BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine
photolyase [Candidatus Liberibacter asiaticus str. psy62]
         (483 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040847|gb|ACT57643.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 483

 Score = 1010 bits (2611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/483 (100%), Positives = 483/483 (100%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF
Sbjct: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD
Sbjct: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP
Sbjct: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ
Sbjct: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS
Sbjct: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF
Sbjct: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP
Sbjct: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ
Sbjct: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480

Query: 481 SLL 483
           SLL
Sbjct: 481 SLL 483


>gi|315122561|ref|YP_004063050.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495963|gb|ADR52562.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 477

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/476 (76%), Positives = 414/476 (86%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSVHLVWLRNDLRITDNKALYAAC N +AKVIAVFIATP+QW QHG+SARQ+ FIYA+LL
Sbjct: 1   MSVHLVWLRNDLRITDNKALYAACKNPNAKVIAVFIATPQQWNQHGMSARQATFIYATLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           QVQ+SLS++GIV QYHQCS+FDD+I+WLD YC +++VT+LFYNRQYEINE RRD+ LE+R
Sbjct: 61  QVQQSLSKRGIVLQYHQCSHFDDAIKWLDVYCQEKKVTELFYNRQYEINEHRRDQELERR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++RVIC+ FDDSVLLPPG I N A +MYK+YTPFRK  IQNL Q+DLRS+P P IR TG
Sbjct: 121 LKNRVICRGFDDSVLLPPGKIFNRACEMYKIYTPFRKEFIQNLTQSDLRSVPAPTIRQTG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           PV  + +P +FDYPFQ +DP+FPIGE NAL ILRKFCKEKV YYVEQRDIPAIQGTS LS
Sbjct: 181 PVILTKVPLYFDYPFQEVDPIFPIGEYNALQILRKFCKEKVQYYVEQRDIPAIQGTSHLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYLSIG LSPRQCWNRL  EF D+LIK  SGAFSWLNELIWREFY HL+ FYPS+C GKP
Sbjct: 241 PYLSIGALSPRQCWNRLNVEFSDVLIKTNSGAFSWLNELIWREFYHHLIVFYPSLCTGKP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+KIEWN D   L+ WKQG TGFP++DAAMRQLNT+GWMHNRLRMITASFLVKDLL
Sbjct: 301 FIQWTDKIEWNNDPRALEVWKQGNTGFPLVDAAMRQLNTMGWMHNRLRMITASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWRIGE+YFMSQLLDG+LASNNGGWQWAASTG+DSVPYFRIFNPT QGKRFDP+G FIR
Sbjct: 361 IDWRIGEKYFMSQLLDGNLASNNGGWQWAASTGHDSVPYFRIFNPTTQGKRFDPKGIFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
            WLPEL NVP QYIH PH+W+D  +    YP PIVDHK+A  HT+++Y  A+KQS+
Sbjct: 421 QWLPELKNVPDQYIHTPHNWIDNKNTIHPYPHPIVDHKQARQHTISKYSIAQKQSI 476


>gi|157369495|ref|YP_001477484.1| deoxyribodipyrimidine photolyase [Serratia proteamaculans 568]
 gi|157321259|gb|ABV40356.1| Deoxyribodipyrimidine photo-lyase [Serratia proteamaculans 568]
          Length = 476

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/473 (64%), Positives = 374/473 (79%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRITDNKAL+AAC + DA+V+AVFIATP+QWRQH ++ RQ  FI+A+LL
Sbjct: 1   MTTHLVWLRNDLRITDNKALHAACSDPDARVLAVFIATPQQWRQHEMAPRQVAFIHANLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           QVQ++L+++GI   YHQC +F  +++WL +YC QQ+V +LFYNRQYEINE +RD+ LE+R
Sbjct: 61  QVQQALAERGIPLGYHQCDDFAAAVDWLTAYCAQQQVDRLFYNRQYEINERQRDQRLEQR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  + IC+SFDDS+LLPPGS+   + +MYK+YTPFRKA IQ L ++D++SLP P  R  G
Sbjct: 121 LSGQAICQSFDDSLLLPPGSVQTGSGEMYKIYTPFRKAFIQRLTESDIQSLPAPKPRAGG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  + IP  FDYP    +  FP GE+ AL  LR FC+E+V  Y+EQRD+PAI GTS LS
Sbjct: 181 ALPVTAIPEAFDYPPAEPNEDFPAGEEAALQRLRSFCREQVQDYLEQRDLPAIAGTSSLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IGVLSPRQC+NRL+ E   LL    SGAF WLNELIWREFYRHLM  YP++C  +P
Sbjct: 241 PYLAIGVLSPRQCFNRLRAECPQLLENHDSGAFGWLNELIWREFYRHLMVAYPALCKHRP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ W  +  LLQAW+QG TG+PI+DAAMRQLNT GWMHNRLRMI+ASFLVKDLL
Sbjct: 301 FIEWTDRVRWQDNQELLQAWQQGVTGYPIVDAAMRQLNTTGWMHNRLRMISASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQGTFIR
Sbjct: 361 IDWRAGESYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGTFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WL EL +VP   IH PH W ++    L+YPLPIVDHK+A   TL  + AAK+
Sbjct: 421 KWLSELADVPDNAIHQPHRWAEQQQRVLDYPLPIVDHKQARLETLAAFEAAKR 473


>gi|270263757|ref|ZP_06192026.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
 gi|270042641|gb|EFA15736.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
          Length = 476

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/473 (63%), Positives = 366/473 (77%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRITDNKAL+AAC +  A+V+AVFIATP QWRQH ++ RQ+ FI+A+LL
Sbjct: 1   MATHLVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQHEMAPRQAAFIHANLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           QVQ++L+ +GI    HQC +F  +++WL +YC Q+RV  LFYNRQYEINE++RD+  ++R
Sbjct: 61  QVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQRR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  +VIC+SFDDS+LLPPGS+     +MYK+YTPFRKA IQ L ++D+RSLP P  R  G
Sbjct: 121 LSGQVICQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAFIQRLTESDVRSLPAPKRREGG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  S  P  FDYP       FP GE  AL  LR FC+E+V  Y++QRD PAI GTS LS
Sbjct: 181 ALPVSVAPAAFDYPQVEAGADFPAGEDAALKRLRAFCREQVQDYLQQRDFPAIAGTSSLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IGVLSPRQC+NRL+ E   +L    SGAF WLNELIWREFYRHLM  YP++C  +P
Sbjct: 241 PYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFYRHLMVAYPALCRHRP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ W  +  LL AW++G TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKDLL
Sbjct: 301 FIEWTDRVRWRNNDALLLAWQKGATGYPIVDAAMRQLNKTGWMHNRLRMISASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQGTFIR
Sbjct: 361 IDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGTFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP   +H PH W +K   +L+YPLPIVDHK+A   TL  + AAK+
Sbjct: 421 KWLPELADVPDNALHQPHLWAEKQQRTLDYPLPIVDHKQARLETLAAFEAAKR 473


>gi|320539319|ref|ZP_08038988.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia
           symbiotica str. Tucson]
 gi|320030444|gb|EFW12454.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia
           symbiotica str. Tucson]
          Length = 475

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/473 (63%), Positives = 365/473 (77%), Gaps = 1/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRITDNKAL+AAC+  DA+V+AVFIATP+QWR+H I+ RQ+  I+ASL 
Sbjct: 1   MTTHLVWLRNDLRITDNKALHAACNEPDARVLAVFIATPQQWRRHDIAPRQAALIHASLK 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q++L QKGI    HQC +F  SI+WL  YC +Q+VT LFYNRQYE+NE RRD+ +E+R
Sbjct: 61  QLQQALEQKGIPLYCHQCDDFAASIDWLTDYCAKQQVTVLFYNRQYELNEWRRDQQVEQR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  RV C+ FDDS+LLPPGS+   + +MYKVYTPFR A I+ L ++D+R LP P  R  G
Sbjct: 121 LAGRVRCQHFDDSLLLPPGSVQTGSGEMYKVYTPFRNAFIRRLTESDVRCLPAPQPR-AG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +   + P  F+Y        FP GEQ AL  LR FC+++V  Y+ QRD+PAI GTS LS
Sbjct: 180 ALPIPDAPPAFEYSHADPGEDFPAGEQAALQRLRAFCRQQVQDYLTQRDLPAIAGTSSLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IG LSPRQC+NRL  E   +L + +SGAF WLNELIWREFYRHLMA YP++C  +P
Sbjct: 240 PYLAIGTLSPRQCFNRLCAEHPSVLEERESGAFGWLNELIWREFYRHLMAAYPALCRHRP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+K+ W  D  LLQAW++G TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKDLL
Sbjct: 300 FIAWTDKVRWRNDESLLQAWQRGKTGYPIVDAAMRQLNNTGWMHNRLRMISASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE YFMSQLLDGDLA+NNGGWQWAASTG D+VPYFRIFNPT Q +RFDPQGTFIR
Sbjct: 360 IDWRVGERYFMSQLLDGDLAANNGGWQWAASTGTDAVPYFRIFNPTSQSERFDPQGTFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP   IH PH W  K  L LNYPLP+VDH++A   TL  + AAK+
Sbjct: 420 KWLPELADVPDNDIHQPHLWAQKQQLVLNYPLPVVDHRQARLETLAAFEAAKQ 472


>gi|293397249|ref|ZP_06641522.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
 gi|291420269|gb|EFE93525.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
          Length = 476

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 287/473 (60%), Positives = 355/473 (75%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLR+TDN+ALYAAC +  A V+AVFIATP+QWRQH ++ARQ+ FI+A+L 
Sbjct: 1   MTTHLVWLRNDLRVTDNQALYAACRDPQATVMAVFIATPQQWRQHHMAARQAAFIHATLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q++L+Q+GI     QC +F  +++WL  +C    V  LFYNRQYE+NE RRD+ LE+R
Sbjct: 61  QLQQALAQRGIPLVTQQCDDFAAAVDWLADFCQASHVDALFYNRQYELNERRRDRQLEQR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V C++FDDS+LLPPGS+L+   +MYK+YTPFR+A +  L ++D+ SLP PA R  G
Sbjct: 121 LNGMVNCQAFDDSLLLPPGSVLSGNGEMYKMYTPFRRAFLARLAESDIASLPAPAQRSCG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                  P  FDYP   +D  FP GE+ AL  LR FC+++V  Y  QRDIPA+ GTS LS
Sbjct: 181 QWQAITPPAPFDYPAAELDDGFPAGEEAALRRLRHFCRQQVQDYHHQRDIPAVDGTSVLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++G LSPRQC NRL+ E  D+L  P  GAF WLNELIWREFYRHL+   P++C  +P
Sbjct: 241 PYLAVGALSPRQCVNRLRAECPDMLANPHGGAFCWLNELIWREFYRHLLVANPALCRHRP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ WN  +    AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 301 FIAWTDRVRWNPAADNFLAWQQGRTGYPIVDAAMRQLNQTGWMHNRLRMIAASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QGKRFDPQG+FIR
Sbjct: 361 IDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGKRFDPQGSFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP   +H PH W +K    L+YPLPIVDH +A   TL  + AAK+
Sbjct: 421 KWLPELADVPDNELHQPHRWAEKQQRVLDYPLPIVDHPQARLATLAAFDAAKR 473


>gi|322833858|ref|YP_004213885.1| Deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602]
 gi|321169059|gb|ADW74758.1| Deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602]
          Length = 476

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 276/475 (58%), Positives = 347/475 (73%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLRITDN+AL+AAC +  A+VIAVF+ATPEQW+QH ++ RQ+ FIY  L 
Sbjct: 1   MTTHLVWFRNDLRITDNRALHAACEDPQARVIAVFVATPEQWKQHEMAPRQAMFIYQHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+++GI   YHQC +F DS+ WL  +C  ++V  LFYN+QYE NE +RD  LE  
Sbjct: 61  ALQHALAERGIGLHYHQCDDFADSVTWLKDFCKTEKVDALFYNKQYEFNERQRDAALENA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   VIC +FDDS+LLPPGS++    +MYKVYTPFR+A +  L ++D RSLP P  R   
Sbjct: 121 VSESVICHAFDDSLLLPPGSVMTGNNEMYKVYTPFRRAFLSRLTESDSRSLPAPQTRGNA 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               ++    FDYP   I   F IGE+ A + LR FC+E+V  Y+EQRD+PA+ GTS LS
Sbjct: 181 EKVVTHRLMPFDYPLADIGDHFAIGEEAARNRLRSFCREQVQDYLEQRDLPAVDGTSSLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IGVLSPRQC NRL+ E  D+L K   GAF WLNEL+WREFYRHL+  +P +C  +P
Sbjct: 241 PYLAIGVLSPRQCLNRLRAECPDVLEKTDGGAFGWLNELVWREFYRHLIVAWPKLCKHQP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F+ WT+ + W      LQAWK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 301 FVAWTDNVRWRHAPDDLQAWKDGKTGYPIVDAAMRQLNATGWMHNRLRMIVASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           ++WR GE YFMSQLLDGDLA+NNGGWQW ASTG D+ PYFRIFNPT QG+RFD  G FI+
Sbjct: 361 INWREGERYFMSQLLDGDLAANNGGWQWGASTGTDAAPYFRIFNPTTQGERFDKTGCFIK 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            W+PEL +VP + IH PH W +K+   L+YPLP++DH +A   TL  + AAK +S
Sbjct: 421 AWVPELADVPERDIHQPHRWAEKHHRVLDYPLPVIDHAQARKDTLAAFEAAKNRS 475


>gi|238797755|ref|ZP_04641249.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
 gi|238718396|gb|EEQ10218.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
          Length = 481

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/475 (59%), Positives = 349/475 (73%), Gaps = 2/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R+DLRITDN AL+AAC +  AKV+AVFIATP+QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRHDLRITDNLALHAACQDEQAKVMAVFIATPKQWAAHDMAPRQAAFLRQNLH 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC++F DSI WL  +C QQ+V  LFYN+QYE+NE+RRD+    +
Sbjct: 61  LLQAALADRGIPLHYHQCADFQDSILWLADFCQQQQVDALFYNQQYELNEMRRDEAFTVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C SF DSVLLPPGS+     +MYK++TPFR+A IQ L+ +D RS+P P  R  
Sbjct: 121 LNRRSIACHSFHDSVLLPPGSVQTGNNEMYKIFTPFRRAFIQRLMMSDCRSVPAPKARQN 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                      FDYP Q++D  +FP GE+ AL  LR FC+E+V  Y++QRD+PA+ GTS 
Sbjct: 181 AGAITLTPLEPFDYPQQSVDSQLFPAGEEAALQRLRSFCREQVQDYLQQRDLPAVAGTSG 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC+NRL+ E  DLL    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCFNRLRAECPDLLESSDSGAFTWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PF+ WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 301 HPFMGWTDAVRWNHSEPQLIAWQQGLTGYPIVDAAMRQLNETGWMHNRLRMITASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +GTF
Sbjct: 361 LLIDWRLGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR WLPEL  VP + IH P  W  +    LNYP P+VDHK A   TL  + AAK+
Sbjct: 421 IRRWLPELAAVPDRDIHQPWRWAQQQQQHLNYPPPLVDHKLARLATLAAFDAAKR 475


>gi|253687618|ref|YP_003016808.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754196|gb|ACT12272.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 497

 Score =  594 bits (1532), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 278/477 (58%), Positives = 353/477 (74%), Gaps = 2/477 (0%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           AT   + HLVWLRNDLRITDN AL AAC + +A V+AVFIATP QW +H ++ RQ+ F+ 
Sbjct: 6   ATHHAATHLVWLRNDLRITDNLALSAACQDPNATVLAVFIATPAQWEKHDMAPRQAAFLL 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  VQ +L++KGI   YH+C++F  S++WL  +C QQ+ T LFYN QYEINE  RDK 
Sbjct: 66  ENLTSVQHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQ 125

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ RL   V+C  + DS+LLPPGS+L    +MYKV+TPFR+A I+ L++A+   +P P  
Sbjct: 126 VKDRLADSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEAETTCVPAPDA 185

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           R   P+        F YP + +D   FP GE+ AL  LR+FC+E+V  Y  QRD+PA+ G
Sbjct: 186 R-GEPIHNMMALAPFSYPQREVDSDDFPCGERAALQQLRRFCREQVQDYDRQRDVPALPG 244

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSPYL++G++SPRQC+NRL+ E  D+L + + GAF+W NEL+WREFYRHL+  +P +
Sbjct: 245 TSKLSPYLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQL 304

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           C  +PF  WT+ ++W + S  L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFL
Sbjct: 305 CKHRPFTAWTQWVKWRESSEDLTAWQQGKTGYPIVDAAMRQLNGTGWMHNRLRMICASFL 364

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+
Sbjct: 365 VKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPE 424

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           G FIRHWLPEL  VP + IH PH W DK+   LNYPLPIVDHK A  +TL  + AAK
Sbjct: 425 GRFIRHWLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQNTLAAFEAAK 481


>gi|238756042|ref|ZP_04617366.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
 gi|238705767|gb|EEP98160.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
          Length = 479

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/474 (59%), Positives = 352/474 (74%), Gaps = 2/474 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL+W R+DLR+TDN AL+AAC +  A+VIAVFIATP+QW  H +S +Q+ FI  +L 
Sbjct: 1   MATHLIWFRHDLRVTDNLALHAACQDPQAQVIAVFIATPQQWAAHNMSPKQATFIQQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+ + I   YHQC +FD S  WL ++  +++V KLFYN QYE+NE RRD  LE  
Sbjct: 61  CLQQALALRSIPLYYHQCHDFDASRRWLAAFSREKQVDKLFYNHQYELNERRRDAELEDS 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+ +V C+ + DS+LL PGS+L     MYK+YTPFR+A IQ L+ +D + +P P  R   
Sbjct: 121 LRGQVACQGYHDSLLLAPGSVLTGNGDMYKIYTPFRRAFIQRLLISDCQCVPAPRAR-GE 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           P+T       FDYP + +D  +FP GE+ AL  LR+FC+E V  Y +QRD+PAI GTSQL
Sbjct: 180 PITTIQPLAPFDYPTENVDSVLFPAGEEAALQRLRQFCREPVRDYHQQRDLPAIAGTSQL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC+NRL+ E  D+L +P SGAFSWLNELIWREFYRHL+  YP +C  +
Sbjct: 240 SPYLAIGQLSPRQCFNRLRVECPDMLEQPDSGAFSWLNELIWREFYRHLLVAYPRLCQHR 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ WN D+  LQAW+QG TG+PI+DAAMRQ+N  GWMHNRLRMITASFLVKDL
Sbjct: 300 PFIGWTDEVRWNTDAERLQAWQQGMTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR GE YFMS+LLDGDLA+NNGGWQWAASTG DS PYFRIFNPT QG+RFD  G FI
Sbjct: 360 LVDWRQGERYFMSKLLDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDKHGVFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           RHWLPEL  VP   IH P  W  +    L+YPLP+VDHK+A   TL  + AA++
Sbjct: 420 RHWLPELAAVPASDIHQPWRWAQRQQQHLDYPLPMVDHKQARLDTLAAFEAARR 473


>gi|238786314|ref|ZP_04630253.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
 gi|238712773|gb|EEQ04846.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
          Length = 481

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 282/475 (59%), Positives = 346/475 (72%), Gaps = 2/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLR+TDN ALYAAC +  A+VIAVFIATP+QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWLRNDLRVTDNLALYAACQDEHARVIAVFIATPKQWAAHDMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F DSI WLD++C QQ+V  LFYN+QYE+NE RRD+    +
Sbjct: 61  LLQGALASRGIPLHYHQCDDFQDSIVWLDNFCQQQQVDALFYNQQYELNERRRDEAFTAQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  + I C SF DSVLLPPGS+     +MYK++TPFR+A IQ L+ +D R +P P  R  
Sbjct: 121 LNRQSIACHSFHDSVLLPPGSVQTGNHEMYKIFTPFRRAFIQRLMMSDCRCVPAPQARQN 180

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 +    FDYP  + D  +FP GE+ AL  LR FC+E+V  Y++QRD PAI GTS 
Sbjct: 181 SGAVELSPLEPFDYPQHSADNSLFPAGEEAALQRLRSFCREQVQDYLQQRDRPAIAGTSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G++SPRQC+NRL+ E  DLL +  SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGIVSPRQCFNRLRAECPDLLERSDSGAFTWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 HPFIGWTDAVRWNHSEQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +GTF
Sbjct: 361 LLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR WLPEL  VP   IH P  W  +    LNYP P+VDHK A   TL  + AAK+
Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAQRQQQHLNYPPPLVDHKLARLATLAAFDAAKR 475


>gi|227114750|ref|ZP_03828406.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 492

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 275/476 (57%), Positives = 352/476 (73%), Gaps = 2/476 (0%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           TT    H+VWLRNDLR+TDN ALYAAC + +A V+AVFIATP QW +H ++ RQ+ F+  
Sbjct: 2   TTHAVTHVVWLRNDLRVTDNLALYAACQDPNATVLAVFIATPVQWEKHDMAPRQAAFLLE 61

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L  VQ++L++KGI   YH+C++F  S++WL  +C QQ+ T LFYN QYEINE  RDK +
Sbjct: 62  NLRLVQQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQV 121

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + RL   V+C  + DS+LLPPGS+L    +MYKV+TPFR+A I+ L+++D   +P P  R
Sbjct: 122 KDRLADSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVPAPDAR 181

Query: 184 LTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              P+        F YP + +D   FP GE+ AL  LR+FC+E+V  Y +QRD PA+ GT
Sbjct: 182 -GEPINNMVELAPFSYPQREVDGDDFPSGERAALQQLRRFCREQVQDYDQQRDFPALPGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL++G++SPRQC+NRL+ E  ++L + + GAF+W NEL+WREFYRHL+  +P +C
Sbjct: 241 SKLSPYLALGIVSPRQCFNRLRAECPEMLERREGGAFTWFNELVWREFYRHLIVSWPQLC 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PF  WT+ ++W +    L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLV
Sbjct: 301 KHRPFTAWTQWVKWRESREDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLV 360

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G
Sbjct: 361 KDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEG 420

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            FIRHWLPEL  VP + IH PH W DK+   LNYPLPIVDHK A   TL  + AAK
Sbjct: 421 RFIRHWLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQDTLAAFEAAK 476


>gi|227327531|ref|ZP_03831555.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 492

 Score =  588 bits (1517), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 275/476 (57%), Positives = 353/476 (74%), Gaps = 2/476 (0%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           TT +  H+VWLRNDLR+TDN ALYAAC + +A V+AVFIATP QW +H ++ RQ+ F+  
Sbjct: 2   TTHVVTHVVWLRNDLRVTDNLALYAACQDPNASVLAVFIATPAQWEKHDMAPRQAAFLLE 61

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L  VQ +L++KGI   YH+C++F  S++WL  +C QQ+ T LFYN QYEINE  RDK +
Sbjct: 62  NLTLVQHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQV 121

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + RL   V+   + DS+LLPPGS+L    +MYKV+TPFR+A I+ L+++D   +P P  R
Sbjct: 122 KDRLADSVVFHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVPAPDAR 181

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              P+  +     F YP + +D   FP GE+ AL  LR+FC+E+V  Y +QRD PA+ GT
Sbjct: 182 -GEPIDNTVELAPFSYPQREVDSEDFPRGERAALQQLRRFCREQVQDYDQQRDFPALPGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL++G++SPRQC+NRL+ E  D+L + + GAF+W NEL+WREFYRHL+  +P +C
Sbjct: 241 SKLSPYLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLC 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PF  WT+ ++W +    L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLV
Sbjct: 301 KHRPFTAWTQWVKWRESPKDLAAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMICASFLV 360

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G
Sbjct: 361 KDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEG 420

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            FIRHWLPEL  VP + IH PH W DK+   LNYPLPIVDHK A  +TL  + AAK
Sbjct: 421 RFIRHWLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQNTLAAFEAAK 476


>gi|238762829|ref|ZP_04623797.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC
           33638]
 gi|238698840|gb|EEP91589.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC
           33638]
          Length = 481

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 283/475 (59%), Positives = 343/475 (72%), Gaps = 2/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLR+TDN AL+AAC +  A V+AVFIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRLTDNLALHAACQDPQAIVMAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+++GI   YHQC +F DSI WL+ +C QQ V  LFYN+QYE+NE  RD+ L  +
Sbjct: 61  LLQSALAERGIPLHYHQCDDFKDSITWLNDFCQQQPVDALFYNQQYELNERVRDEALMAQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C  F DSVLLPPG++L    +MYKV+TPFR+A IQ L+ +D RS+P P  R T
Sbjct: 121 LSQRAIACHGFHDSVLLPPGTVLTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKARTT 180

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             VTPS     FDYP Q +D  +FP GE+ AL  LR+FC+E    Y +QRD PAI GTS 
Sbjct: 181 AAVTPSQPLAPFDYPQQPVDNQLFPAGEEAALQRLRRFCREDAQDYQQQRDFPAIAGTSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC NRL+ E  DLL   + GAF WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPDLLENVEGGAFIWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 HPFISWTDAVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 361 LLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR WLPEL  VP   IH P  W ++    L+YP P+VDHK+A   TL  + AAK+
Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQPLDYPPPLVDHKQARLATLAAFEAAKR 475


>gi|261822355|ref|YP_003260461.1| deoxyribodipyrimidine photolyase [Pectobacterium wasabiae WPP163]
 gi|261606368|gb|ACX88854.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium wasabiae WPP163]
          Length = 492

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 274/476 (57%), Positives = 351/476 (73%), Gaps = 2/476 (0%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           TT +  H+VWLRNDLR+TDN AL+AAC N +A V+AVFIATP QW+QH ++  Q+ F+  
Sbjct: 2   TTPVVTHVVWLRNDLRVTDNLALHAACQNPNATVLAVFIATPAQWKQHDMAPHQATFLLD 61

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L  VQ++L++KGI   YH+C++F  S++WL  +C QQ+ T LFYN QYEINE  RDK +
Sbjct: 62  NLTLVQQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNHQYEINERLRDKQV 121

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + RL   V+C  + DS+LLPPGS+L    +MYKV+TPFR+A I+ L++AD   +P P +R
Sbjct: 122 KDRLTDSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTMCVPAPDVR 181

Query: 184 LTGPVTPSNIPRFFDYP-FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              P+  +     F YP  +  +  FP GE+ AL  LR+FC+E+V  Y +QRD PA  GT
Sbjct: 182 -GEPINNTVAFVPFSYPRVEVNNDDFPCGERAALQQLRRFCREQVQDYDQQRDFPAQPGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL++G++SPRQC+NRL+ E  ++L + + GAF+W NEL+WREFYRHL+  +P +C
Sbjct: 241 SKLSPYLALGIVSPRQCFNRLRTECPEMLERREGGAFTWFNELVWREFYRHLIVSWPLLC 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PF  WT+ ++W +    L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLV
Sbjct: 301 KHRPFTAWTQWVKWRESPEDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLV 360

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G
Sbjct: 361 KDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEG 420

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            FIRHWLPEL  VP + IH PH W DK    LNYP PIVDHK A   TL  + AAK
Sbjct: 421 RFIRHWLPELAIVPDKDIHQPHRWADKQHFKLNYPQPIVDHKTARQDTLAAFEAAK 476


>gi|50120288|ref|YP_049455.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610814|emb|CAG74259.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 497

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 274/471 (58%), Positives = 345/471 (73%), Gaps = 2/471 (0%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            H+VWLRNDLRITDN ALYAAC +  A V+AVFIATP QW +H ++ RQ+ F+  +L  V
Sbjct: 12  THVVWLRNDLRITDNLALYAACQDPSATVLAVFIATPAQWEKHDMAPRQAAFLLENLTLV 71

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L++KGI   YH+C++F  S++WL  +C +Q+ T LFYN QYEINE  RDK ++ RL 
Sbjct: 72  QHVLAEKGIPLHYHECADFAASVDWLMQFCAEQQATDLFYNHQYEINERLRDKQVKDRLA 131

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V+C  + DS+LLPPGS+L    +MYKV+TPFR+A I+ L++AD   +P P  R   P+
Sbjct: 132 DSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTTCVPAPDAR-GEPI 190

Query: 189 TPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             +     F YP   +D   FP GE+ AL  LR+FC+E+V  Y +QRD PA+ GTS+LSP
Sbjct: 191 NNTAELVPFSYPQCEVDSEDFPCGERAALQQLRRFCREQVQDYDQQRDFPALPGTSKLSP 250

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL++G++SPRQC+NRL+ E  D+L + + GAF+W NEL+WREFYRHL+  +P +C  +PF
Sbjct: 251 YLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPF 310

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
             WT+ ++W +    L AW+QG TG+PI+DAAM QLN  GWMHNRLRMI ASFLVKDLL+
Sbjct: 311 TAWTQWVKWRESPEDLTAWQQGKTGYPIVDAAMHQLNETGWMHNRLRMICASFLVKDLLI 370

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIRH
Sbjct: 371 DWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPDGRFIRH 430

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           WLPEL  VP + IH PH W DK  + LNYPLPIVDHK A   TL  + AAK
Sbjct: 431 WLPELAAVPDKDIHQPHRWADKQHVKLNYPLPIVDHKTARLDTLAAFEAAK 481


>gi|307130086|ref|YP_003882102.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Dickeya
           dadantii 3937]
 gi|306527615|gb|ADM97545.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Dickeya
           dadantii 3937]
          Length = 476

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 267/472 (56%), Positives = 346/472 (73%), Gaps = 1/472 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R+DLR+TDN AL+AAC + DA+V AVFIATP+QW  H ++  Q+ F+  +L 
Sbjct: 1   MTTHLVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHAMAPCQAAFLLGNLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ L +K I   Y QC +F   + WL  +C  ++VT+LFYNRQYE NE +RD+ LE+ 
Sbjct: 61  CLQQELREKSIPLHYRQCDDFAAGVRWLADFCRARQVTRLFYNRQYEWNERQRDQQLEQA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L     C+ FDDS+LLPPGS++  +  MYKV+TPFR A ++ L Q D+ S+P PA R  G
Sbjct: 121 LTDVTECRGFDDSLLLPPGSVVTGSGDMYKVFTPFRAAFLKQLQQRDVGSVPAPAARQQG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +TP+++  F DYP   +   FP GE  AL  LR+FC+E+V +Y EQRD+PA+  TS+LS
Sbjct: 181 DITPASLAPF-DYPQTDVHADFPAGEPAALQRLRQFCREQVMFYHEQRDLPALAATSKLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++GVLSPRQC+NRL+ E  D L + +SGAF+W NEL+WREFYRHL+ F P++C  +P
Sbjct: 240 PYLALGVLSPRQCFNRLRMEHPDWLARSESGAFTWFNELVWREFYRHLLVFSPALCKHQP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT ++ W      L AW++G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 300 FISWTRRVAWRNAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW  GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIR
Sbjct: 360 IDWCEGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGEFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            W+PEL  +P + +H PH W  +    ++YPLP+VDHK+A   TL  + AAK
Sbjct: 420 RWVPELAQIPGKAVHQPHEWAIRQQRQIDYPLPMVDHKQARTRTLAAFEAAK 471


>gi|332160904|ref|YP_004297481.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604809|emb|CBY26307.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665134|gb|ADZ41778.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862934|emb|CBX73069.1| deoxyribodipyrimidine photo-lyase [Yersinia enterocolitica W22703]
          Length = 481

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 281/475 (59%), Positives = 341/475 (71%), Gaps = 2/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLR+TDN AL+ AC +  A VIAVFIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRVTDNLALHTACQDPQATVIAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ + I   YHQC +F DSI WLD +C QQ+V  LFYN QYE+NE  RD+ L  +
Sbjct: 61  LLQDALAARAIPLHYHQCDDFKDSITWLDDFCQQQQVDALFYNHQYELNERMRDEALVVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           + HR I C  F D+VLLPPGSIL    +MYKV+TPFR+A IQ L+ +D RS+P P  R T
Sbjct: 121 MGHRAIACHGFHDAVLLPPGSILTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKARTT 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             V PS     FDYP Q +D  +FP GE+ AL  LR+FC+E V  Y +QRD PA+ GTS 
Sbjct: 181 AAVIPSQPLAPFDYPQQPVDSQLFPAGEEAALQRLRRFCREDVQDYQQQRDFPAVAGTSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC NRL+ E  ++L     GAF WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPEVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 HPFIGWTDAVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR WLPEL  VP   IH P  W ++   SL+YP P+V+HK+A   TL  + AAK+
Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQSLDYPPPLVEHKQARLATLAAFEAAKR 475


>gi|123443172|ref|YP_001007146.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090133|emb|CAL12996.1| putative deoxyribodipyrimidine photolyase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 481

 Score =  584 bits (1506), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 281/475 (59%), Positives = 338/475 (71%), Gaps = 2/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLR+TDN AL+ AC +  A VIAVFIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRVTDNLALHTACQDPQATVIAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ + I   YHQC +F DSI WL  +C QQ+V  LFYN QYE+NE  RD+ L  +
Sbjct: 61  LLQDALAARAIPLHYHQCDDFKDSITWLADFCQQQQVDALFYNHQYELNERMRDEALMTK 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L HR I C  F DSVLLPPGS+L    +MYKV+TPFR+A IQ L+ +D RS+P P  R T
Sbjct: 121 LSHRAIACHGFHDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKTRTT 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             V PS     FDYP Q +D  +FP GE+ AL  LR FC+E V  Y +QRD PA+ GTS 
Sbjct: 181 AAVIPSQPLAPFDYPQQPVDSQLFPAGEEAALQRLRSFCREDVQDYQQQRDFPAVAGTSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC NRL+ E   +L     GAF WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPQVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 HPFIGWTDAVLWNHSKQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR WLPEL  VP   IH P  W ++   SL+YP P+V+HK+A   TL  + AAK+
Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQSLDYPPPLVEHKQARLATLAAFEAAKR 475


>gi|251790504|ref|YP_003005225.1| deoxyribodipyrimidine photolyase [Dickeya zeae Ech1591]
 gi|247539125|gb|ACT07746.1| Deoxyribodipyrimidine photo-lyase [Dickeya zeae Ech1591]
          Length = 476

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 270/478 (56%), Positives = 345/478 (72%), Gaps = 11/478 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R+DLR+TDN AL+AAC + +A+V AVFIATP+QW  H ++  Q+ F+  +L 
Sbjct: 1   MTTHLVWFRHDLRLTDNLALHAACQDPEARVEAVFIATPQQWASHDMAPCQAAFLLGNLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L +KGI   YHQC +F  S+ WL ++C + +VT+LFYNRQYE NE RRD+ LE  
Sbjct: 61  CLQQALQEKGIPLHYHQCDDFAASVRWLTAFCREHQVTRLFYNRQYEWNERRRDEQLEPA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L     C  FDDS+LLPPGS++  +  MYKV+TPFR A I+ L Q D+ S+P P  R  G
Sbjct: 121 LAGVTDCYGFDDSLLLPPGSVVTGSGDMYKVFTPFRAAFIKRLQQQDVGSVPAPVSRHQG 180

Query: 187 -----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                P+ P      FDYP   +   FP+GE  AL  LR+FC+E+  +Y E+RD+PA   
Sbjct: 181 EFTLVPLAP------FDYPQTDVHADFPVGESAALQRLRQFCREQAAFYHERRDLPAQAA 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSPYL++G+LSPRQC+NRL+ E  D L +P+SGAF+W NEL+WREFYRHL+ F PS+
Sbjct: 235 TSKLSPYLALGILSPRQCFNRLRMEHPDWLTRPESGAFTWFNELVWREFYRHLLVFSPSL 294

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           C  +PFI WT K+ W      L AW++G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL
Sbjct: 295 CKHQPFIGWTRKVAWRNAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFL 354

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDLL+DW  GE YFMS+LLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+
Sbjct: 355 VKDLLIDWCEGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPE 414

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           G FIR W+PEL  +P + +H PH W  +    ++YP PIVDHK+A   TL  + AAKK
Sbjct: 415 GEFIRRWVPELAQIPGKAVHQPHDWAIRQHRRIDYPAPIVDHKQARTRTLTAFEAAKK 472


>gi|238898396|ref|YP_002924077.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466155|gb|ACQ67929.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 484

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 278/476 (58%), Positives = 344/476 (72%), Gaps = 2/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVWLR+DLR+TDN+AL AAC +S+AKV+AVFIATP QW+ H ++ RQ+ F+ A L 
Sbjct: 1   MPTHLVWLRHDLRVTDNRALNAACQHSEAKVLAVFIATPIQWKTHHMAPRQAAFLLAHLK 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ  L++  I   YH+C +F D+++WL  +C   +V KLFYN QYEINE RRD  LEK+
Sbjct: 61  AVQARLAELNIPLHYHECDDFQDAVKWLIDFCDHHKVDKLFYNHQYEINESRRDHALEKK 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L H+VIC+ F D+VLLPP  +L    QMY+V+TPFR+A ++ L   +L  +PVP  R   
Sbjct: 121 LSHQVICQGFHDAVLLPPEKVLKENGQMYQVFTPFRRAFLKQLFLTNLSCIPVPKKRDGP 180

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            V+ S     FDYP    D  +FPIGE  A   L +FC  KV  Y   RD+ AI+GTS L
Sbjct: 181 QVSISLTELSFDYPLLDFDTELFPIGEAAAQKQLTRFCDAKVSAYSHARDMLAIKGTSGL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++G+LSPRQC   L+E F +  I+   GAF WLNELIWR+FYRHL+  YP +  G 
Sbjct: 241 SPYLTLGILSPRQCLGCLREAFPEG-IEDHKGAFDWLNELIWRDFYRHLLIAYPRLSKGH 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT  ++W+    LL+ W+QG TG+PI+DAAMRQLNT GWMHNRLRMITASFLVKDL
Sbjct: 300 PFIGWTTFVQWHHSDSLLEKWQQGQTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FI
Sbjct: 360 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPKGEFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           RHWLPELN VP   IH P SW +KN   L+YP PIVDH++A   TL+ +  AK  S
Sbjct: 420 RHWLPELNPVPESEIHQPWSWAEKNHKQLDYPTPIVDHQQARQATLSAFATAKNLS 475


>gi|242238580|ref|YP_002986761.1| deoxyribodipyrimidine photolyase [Dickeya dadantii Ech703]
 gi|242130637|gb|ACS84939.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech703]
          Length = 477

 Score =  582 bits (1499), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 271/473 (57%), Positives = 346/473 (73%), Gaps = 1/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLRITDN ALYAAC + +A+V AVFIATP QW++H ++ RQ+  ++  +L
Sbjct: 1   MTTHLVWFRNDLRITDNLALYAACQDPEAQVEAVFIATPGQWKRHEMAPRQAALLFDCVL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q++L +KGI   YHQC +FD ++EWL + C Q++ T LFYNRQYE NE RRD+ L + 
Sbjct: 61  QLQRALYEKGIPLHYHQCEDFDGALEWLAALCRQRQATHLFYNRQYEWNEQRRDQALSRH 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V  ++FDDS+LL PGS++  + +MYKV+TPFR A I  L+Q    S+P P  R   
Sbjct: 121 LENGVRIQAFDDSLLLAPGSVVTGSGEMYKVFTPFRTAFITQLLQTSTDSVPAPTARRQP 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               +     FDYP   +   FP GE  AL  LR+FC+E+V+ Y E RD+P+   TS+LS
Sbjct: 181 LPPLTPP-APFDYPQLDVAGDFPAGEAAALQRLRQFCREQVHVYHELRDVPSRPATSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++GVLSPRQC+NRL+ E  D L + + GAF W NEL+WREFYRHL+ F+P++C  +P
Sbjct: 240 PYLALGVLSPRQCFNRLRAEHPDWLAQREGGAFCWFNELVWREFYRHLLVFHPALCRHRP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ W      L AW++G TG+PI+DA MRQL+  GWMHNRLRMI ASFLVKDLL
Sbjct: 300 FIAWTDRVVWRSAPQELLAWQRGETGYPIVDAGMRQLHQTGWMHNRLRMICASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIR
Sbjct: 360 IDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPNGDFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            W+PEL  VP + IH PH W +K    L+YPLPIVDHK+A   TL  + AAKK
Sbjct: 420 RWVPELAGVPGKDIHQPHRWAEKMRCRLDYPLPIVDHKQARVRTLAAFDAAKK 472


>gi|271499741|ref|YP_003332766.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586]
 gi|270343296|gb|ACZ76061.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586]
          Length = 481

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 266/475 (56%), Positives = 346/475 (72%), Gaps = 1/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R+DLR+TDN AL+AAC + DA+V AVFIATP+QW  H ++  Q+ F+  +L 
Sbjct: 1   MTTHLVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHDMAPCQAAFLLGNLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L +KGI   Y QC +F  S+ WL  +C +++VT+LFYNRQYE NE +RD  L + 
Sbjct: 61  CLQQALQEKGIPLHYQQCDDFAASVRWLADFCRERQVTQLFYNRQYEWNERQRDGQLTQA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    +C+ FDDS+LLPPGS++  + +MYKV+TPFR A I+ L   D+ SLP P  R  G
Sbjct: 121 LAGVTVCREFDDSLLLPPGSVVTGSGEMYKVFTPFRTAFIKRLQLQDVSSLPAPVTRQQG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            VT + +  F DYP   +   FP+GE  A+  LR+FC+E+V +Y   RD+PA   TS+LS
Sbjct: 181 DVTLAPLAPF-DYPQAEVHADFPVGEAAAVQRLRQFCREQVAFYHALRDLPARPATSKLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++G+LSPRQC+NRL+ E  D L +P+ GAF+W NEL+WREFYRHL+ F PS+C  +P
Sbjct: 240 PYLALGILSPRQCFNRLRMEHPDWLSQPEGGAFTWFNELVWREFYRHLLVFSPSLCRHQP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT ++ W      L AW++G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 300 FIGWTRRVAWRHAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMS+LLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIR
Sbjct: 360 IDWREGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPDGEFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           HW+PEL  +P + +H PH W       ++YP PIVDHK+A   TL  + AAK+++
Sbjct: 420 HWIPELAQIPGKAVHQPHDWAACQHRRIDYPAPIVDHKQARTRTLAAFEAAKQEA 474


>gi|292898878|ref|YP_003538247.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946]
 gi|291198726|emb|CBJ45835.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946]
          Length = 482

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/476 (57%), Positives = 349/476 (73%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  A VIA+FIATP+QWR H ++ +Q+ FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPQQWRMHHMAPKQAEFIWQSLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ KGIV    QC +F  S+  L  +C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 61  DVQQSLAAKGIVLHVAQCDDFSASVTLLQDFCREHRVDRLFYNYQYEVNERQRDAAVERA 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L +  V+ + FDDS+LLPPGS+L    +MYKV+TPF KA ++ L Q     LP PA+R +
Sbjct: 121 LFEDDVVSQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRQS 180

Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G + P +   + FDYP + I+  +FP GE+ A+  LR+FC++ V  Y +QRD+PA  GTS
Sbjct: 181 GAIEPEAGSLKPFDYPREDIESSLFPSGEKAAIARLREFCQQAVTDYPKQRDLPARDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L    S  F WLNELIWREFYRHL+  +P++C 
Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPAGL--EDSRVFVWLNELIWREFYRHLLVAFPALCR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF  WT  ++W  D   L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 299 HQPFTRWTNSVKWRDDKQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 359 DLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL  VPT+YIH PH W  KN  +L+YPLP+VDHK+A   TL+ + AA+K
Sbjct: 419 FIRRWLPELRQVPTEYIHQPHQWARKNQRTLDYPLPLVDHKQARQQTLDVFEAARK 474


>gi|22125169|ref|NP_668592.1| deoxyribodipyrimidine photolyase [Yersinia pestis KIM 10]
 gi|45442282|ref|NP_993821.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108811346|ref|YP_647113.1| deoxyribodipyrimidine photolyase [Yersinia pestis Nepal516]
 gi|149365412|ref|ZP_01887447.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
           CA88-4125]
 gi|162421421|ref|YP_001607911.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
 gi|165925225|ref|ZP_02221057.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165937153|ref|ZP_02225718.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008496|ref|ZP_02229394.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212293|ref|ZP_02238328.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167421168|ref|ZP_02312921.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423664|ref|ZP_02315417.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468999|ref|ZP_02333703.1| deoxyribodipyrimidine photolyase [Yersinia pestis FV-1]
 gi|218929768|ref|YP_002347643.1| deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
 gi|229838256|ref|ZP_04458415.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895550|ref|ZP_04510721.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           Pestoides A]
 gi|229898820|ref|ZP_04513965.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901594|ref|ZP_04516716.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           Nepal516]
 gi|270489781|ref|ZP_06206855.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
 gi|294504486|ref|YP_003568548.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
 gi|21958032|gb|AAM84843.1|AE013730_2 deoxyribodipyrimidine photolyase (photoreactivation) [Yersinia
           pestis KIM 10]
 gi|45437146|gb|AAS62698.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774994|gb|ABG17513.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Nepal516]
 gi|115348379|emb|CAL21314.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
 gi|149291825|gb|EDM41899.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
           CA88-4125]
 gi|162354236|gb|ABX88184.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
 gi|165915016|gb|EDR33628.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922832|gb|EDR39983.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992878|gb|EDR45179.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206224|gb|EDR50704.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960657|gb|EDR56678.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167057834|gb|EDR67580.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681523|gb|EEO77617.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           Nepal516]
 gi|229688368|gb|EEO80439.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694622|gb|EEO84669.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701356|gb|EEO89384.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           Pestoides A]
 gi|262362522|gb|ACY59243.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
 gi|262366473|gb|ACY63030.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
 gi|270338285|gb|EFA49062.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
 gi|294354945|gb|ADE65286.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
 gi|320016095|gb|ADV99666.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 487

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 278/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
           PB1/+]
 gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+]
          Length = 487

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 278/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKTRHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLESADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|238752103|ref|ZP_04613586.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380]
 gi|238709680|gb|EEQ01915.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380]
          Length = 480

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/474 (58%), Positives = 344/474 (72%), Gaps = 1/474 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLRITDN AL+AAC +S A VIAVF+ATP QW +  ++ RQ+ F++ +L 
Sbjct: 1   MATHLVWFRNDLRITDNLALHAACKDSQATVIAVFVATPVQWGKQDMAPRQAAFLWQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q++  L+++ I   YHQC  F DSI WLD +C Q ++  LFYN+QYE NE +RD  L  +
Sbjct: 61  QLRAVLAERAIPLHYHQCDEFKDSINWLDDFCQQHQIDALFYNQQYEWNERQRDDALIAK 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  RVIC SF DS+LLPPGS+L    +MY+V+TPFR+A IQ L+ +D RS+P P  R T 
Sbjct: 121 LAGRVICHSFHDSLLLPPGSVLTGNGKMYQVFTPFRRAFIQRLMMSDYRSVPAPKARQTK 180

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                     FDYP Q++D  +FP GE+ AL  LR FC+E+V  Y +QRD+PA+ GTS L
Sbjct: 181 IAIEPASWGPFDYPQQSVDNQLFPAGEEAALLRLRTFCREQVQDYQQQRDLPAVAGTSCL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++G+LSPRQC NRL+ E  ++  K   GAF WLNELIWREFYRHL+  YP +C  +
Sbjct: 241 SPYLALGILSPRQCVNRLRAECPEVFEKADGGAFIWLNELIWREFYRHLLVAYPRLCQHR 300

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKDL
Sbjct: 301 PFIDWTDAVVWNHSEQHLLAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDL 360

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI
Sbjct: 361 LINWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKKGIFI 420

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL+ VP   IH P  W  +    L+YP P+VDHK+A   TL  + AAK+
Sbjct: 421 RRWLPELSAVPDSDIHQPWHWAQQQQHPLDYPPPLVDHKQARLATLAAFDAAKR 474


>gi|170023409|ref|YP_001719914.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
           YPIII]
 gi|169749943|gb|ACA67461.1| Deoxyribodipyrimidine photo-lyase [Yersinia pseudotuberculosis
           YPIII]
          Length = 487

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 278/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWATHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|51597229|ref|YP_071420.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
           32953]
 gi|51590511|emb|CAH22151.1| putative deoxyribodipyrimidine photolyase [Yersinia
           pseudotuberculosis IP 32953]
          Length = 487

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 278/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|145598860|ref|YP_001162936.1| deoxyribodipyrimidine photolyase [Yersinia pestis Pestoides F]
 gi|145210556|gb|ABP39963.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Pestoides
           F]
          Length = 487

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 278/477 (58%), Positives = 344/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPAPLVDHKQARLATLAAFEAAKRDS 475


>gi|238793873|ref|ZP_04637493.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909]
 gi|238726776|gb|EEQ18310.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909]
          Length = 485

 Score =  578 bits (1490), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 285/483 (59%), Positives = 345/483 (71%), Gaps = 10/483 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL+W RNDLRITDN AL+AAC +  A VIA+FIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLIWFRNDLRITDNLALHAACQDPQATVIALFIATPAQWAAHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q +L+ +GI   YHQC +F DSI WLD +C QQ+V  LF+N+QYE+NE  RD  L  R
Sbjct: 61  QLQHALAIRGIPLHYHQCDDFQDSIIWLDDFCQQQQVDALFFNQQYELNEQLRDGALVTR 120

Query: 127 LQHR------VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           L HR      + C  FDDSVLLPPGS+L    +MYKV+TPFR+A IQ L+ ++ R +P P
Sbjct: 121 LNHRQGAGHTITCHRFDDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLMMSECRCVPAP 180

Query: 181 AIRLTGPVTPSNIPRF-FDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            IR +  V P  +P   FDYP Q +D  +FP GE+ AL  LR FC+E+V  Y  QRD+PA
Sbjct: 181 KIRDSVAVMP--LPLLPFDYPQQPVDNQLFPAGEEAALQRLRSFCREQVQDYQLQRDLPA 238

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS LSPYL++GVLSPRQC+NRL  E   LL     GAF+WLNELIWREFYRHL+  Y
Sbjct: 239 VAGTSCLSPYLALGVLSPRQCFNRLLAECPALLENTDGGAFTWLNELIWREFYRHLLVAY 298

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +C  +PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+A
Sbjct: 299 PRLCRHRPFIDWTDGVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISA 358

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RF
Sbjct: 359 SFLVKDLLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 418

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           D  G FIR WLPEL  VP   IH P  W  +    L+YPLP+VDHK A   TL  + AAK
Sbjct: 419 DSNGAFIRRWLPELAGVPDSDIHQPWRWAQRQQQHLDYPLPLVDHKLARLATLAAFEAAK 478

Query: 479 KQS 481
           +  
Sbjct: 479 RDG 481


>gi|283479118|emb|CAY75034.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia
           pyrifoliae DSM 12163]
          Length = 504

 Score =  578 bits (1489), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/477 (57%), Positives = 348/477 (72%), Gaps = 5/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  A VIA+FIATP QWR H ++ +Q+ FI+ SL 
Sbjct: 28  MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 87

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ +GIV    QC +F  S+  L  +C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 88  DVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 147

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQH  V+ + FDDS+LLPPGS+L    +MYKV+TPF KA ++ L Q     LP PA+R  
Sbjct: 148 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 207

Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G V   +     FDYP + ID  +FP GE+ A+  LR+FC++ V  Y ++R++PA  GTS
Sbjct: 208 GAVEARAGSLVAFDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 267

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L    S  F WLNELIWREFYRHL+  +P++C 
Sbjct: 268 RLSVYLATGVLSPRQCLHRLLKQHPGAL--EDSRVFVWLNELIWREFYRHLLVAFPALCR 325

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF+ WT+ ++W  DS  L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 326 HQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 385

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 386 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 445

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FIRHWLPEL +VP +YIH PH W  KN  +L+YP P+VDHK A   TL+ + AAK Q
Sbjct: 446 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAKTQ 502


>gi|188534445|ref|YP_001908242.1| deoxyribodipyrimidine photolyase [Erwinia tasmaniensis Et1/99]
 gi|188029487|emb|CAO97364.1| Deoxyribodipyrimidine photo-lyase [Erwinia tasmaniensis Et1/99]
          Length = 477

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/477 (57%), Positives = 348/477 (72%), Gaps = 5/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  AKVIA+FIATPEQWR H ++ +Q+ FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNHALYAACRSQQAKVIALFIATPEQWRAHHMAPKQAEFIWQSLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ KGI     QC +FD S+  L ++C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 61  DVQQSLAAKGIALHVAQCDDFDASVPLLQAFCREHRVDRLFYNYQYEVNERQRDAAMEQA 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L +  V+ + FDDS+LLPPGS+L    +MYKV+TPF KA ++ L Q     LP P +R  
Sbjct: 121 LFEDDVVAQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPDVRQG 180

Query: 186 GPVTPSNIP-RFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G +     P   F+YP + IDP +FP GE+ A+  LR+FC++ V  Y ++RD+PA  GTS
Sbjct: 181 GAIEAGADPLEPFNYPREDIDPSLFPSGEKAAIARLREFCQQAVTDYPDKRDLPASDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L   +   F WLNELIWREFYRHL+  +P++C 
Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHSGALEDAR--VFVWLNELIWREFYRHLLVAFPALCR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF  WT  ++W +    L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 299 HQPFTRWTRNVKWREAPQHLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLLVDWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 359 DLLVDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FIR WLPEL +VP +YIH PH W  KN  +L+YP P+VDHK+A   TL+ + AA+K+
Sbjct: 419 FIRRWLPELRDVPAEYIHQPHQWARKNQQTLDYPQPLVDHKQARQQTLDAFEAARKK 475


>gi|308186057|ref|YP_003930188.1| Deoxyribodipyrimidine photolyase [Pantoea vagans C9-1]
 gi|308056567|gb|ADO08739.1| Deoxyribodipyrimidine photolyase [Pantoea vagans C9-1]
          Length = 474

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 5/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC +S AKVIA+F+ATPEQW+QH +S RQ+ FI+ASL+
Sbjct: 1   MTTHLVWLRNDLRINDNLALHAACRDSKAKVIALFLATPEQWQQHDMSPRQAAFIHASLV 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +VQ +L+++GI   Y  C+ F DSI+ L  +C + +V +LFYN QYE+NE +RD   EKR
Sbjct: 61  EVQNALAERGIALHYQACNAFSDSIDALAEFCDKHQVDQLFYNYQYEVNERQRDAEAEKR 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    VIC+ FDDS+LLPPGS+ +    MYKV+TPF KA ++ L Q+    +P P  R  
Sbjct: 121 LDDTGVICQGFDDSLLLPPGSVQSGDRSMYKVFTPFSKAFVRRLQQSLPECVPAPKPRDG 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+  + IP F D P +A D  +FP GE  AL  LR F  + +  Y  +RD+PA+  TS+
Sbjct: 181 APLKTTPIPAF-DCPTEAFDEDLFPAGEAAALKRLRHFATQPIIDYPAKRDLPALDATSR 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YLS GVLSPRQC +R+  E  D L    S AF+WLNELIWREFYRHL+  YP++C  
Sbjct: 240 LSVYLSTGVLSPRQCLHRVLHEHPDAL--DNSRAFTWLNELIWREFYRHLLVAYPALCRH 297

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           KPFI WT  +EW ++     AWK G TG+PI+DAAMRQ+  +GWMHNRLRMITASFLVKD
Sbjct: 298 KPFIDWTRNVEWQREDAHFDAWKAGKTGYPIVDAAMRQMKALGWMHNRLRMITASFLVKD 357

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG DS PYFRIFNPT QG+RFD QG F
Sbjct: 358 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDEQGEF 417

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IRH+LPEL +VP  +IH PH W +KN+  L+YP PIVDHK A   TL+ +  AK  +
Sbjct: 418 IRHYLPELADVPDSHIHQPHVWAEKNNRKLDYPAPIVDHKAARKKTLDAFERAKSAA 474


>gi|153947154|ref|YP_001400093.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
           31758]
 gi|152958649|gb|ABS46110.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
           31758]
          Length = 487

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 278/477 (58%), Positives = 344/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHVMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +LS +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALSARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|85058846|ref|YP_454548.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str.
           'morsitans']
 gi|84779366|dbj|BAE74143.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str.
           'morsitans']
          Length = 481

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 265/475 (55%), Positives = 337/475 (70%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++HLVWLRNDLR+ DN AL+AAC ++ A+V+AVFIATP+QWR H +S RQ+ FI  +L 
Sbjct: 1   MTIHLVWLRNDLRLHDNTALHAACQDTQARVLAVFIATPQQWRDHDMSPRQAAFIRQNLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+ +GI   YHQC++F   +EWL ++C ++RV KLFYN QYE+NE  RD+ LE+R
Sbjct: 61  HLAEELAARGIALHYHQCADFAAQVEWLAAFCQRERVDKLFYNYQYELNERERDRRLEQR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +  + +C+ FDDSVLLPPGS+     QMYKVYTPFR A +  L + D   LP P+ R   
Sbjct: 121 IGEKTLCQGFDDSVLLPPGSVHTGNQQMYKVYTPFRNAFLGRLEEQDPACLPAPSPRAGA 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P         FDYP       +P GE  AL  LR FC +++  Y   RDIPA+  TS+LS
Sbjct: 181 PCAKVCEIAPFDYPMTPPGEAYPAGEAAALSRLRTFCHQQLQDYHRGRDIPALDATSRLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L++GVLSPRQC+ RL++ +   L   ++GAF+WLNELIWR+FYRHL+  +P++C  +P
Sbjct: 241 AWLAVGVLSPRQCYQRLRKAYPRALTPGQNGAFTWLNELIWRDFYRHLLVAWPALCRYQP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FIPWT  + W +D  L  AW  G TG+PI+DAAMRQL   GWMHNRLRMI+ASFLVKDLL
Sbjct: 301 FIPWTRHVVWRQDDDLFDAWCAGRTGYPIVDAAMRQLAETGWMHNRLRMISASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FIR
Sbjct: 361 IDWRRGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDGDGAFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLP L +VP  Y+H P+ W D     L+YPLPIVDH KA    L+ Y AAK + 
Sbjct: 421 RWLPALESVPDTYLHQPNRWPDAQRAGLDYPLPIVDHGKARAWALDAYEAAKARG 475


>gi|259909092|ref|YP_002649448.1| deoxyribodipyrimidine photolyase [Erwinia pyrifoliae Ep1/96]
 gi|224964714|emb|CAX56231.1| Deoxyribodipyrimidine photo-lyase [Erwinia pyrifoliae Ep1/96]
          Length = 477

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 276/477 (57%), Positives = 348/477 (72%), Gaps = 5/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  A VIA+FIATP QWR H ++ +Q+ FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ +GIV    QC +F  S+  L  +C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 61  DVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 120

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQH  V+ + FDDS+LLPPGS+L    +MYKV+TPF KA ++ L Q     LP PA+R  
Sbjct: 121 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 180

Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G V   +     FDYP + ID  +FP GE+ A+  LR+FC++ V  Y ++R++PA  GTS
Sbjct: 181 GAVEARAGSLVAFDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L    S  F WLNELIWREFYRHL+  +P++C 
Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPGAL--EDSRVFVWLNELIWREFYRHLLVAFPALCR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF+ WT+ ++W  DS  L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 299 HQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 359 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FIRHWLPEL +VP +YIH PH W  KN  +L+YP P+VDHK A   TL+ + AAK Q
Sbjct: 419 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAKTQ 475


>gi|310767008|gb|ADP11958.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia sp.
           Ejp617]
          Length = 477

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 276/477 (57%), Positives = 348/477 (72%), Gaps = 5/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  A VIA+FIATP QWR H ++ +Q+ FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNHALYAACRSKQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ KGIV    QC +F  S+  L  +C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 61  DVQQSLAAKGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 120

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQH  V+ + FDDS+LLPPGS+L    +MYKV+TPF KA ++ L Q     LP PA+R  
Sbjct: 121 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 180

Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G V   ++     DYP + ID  +FP GE+ A+  LR+FC++ V  Y ++R++PA  GTS
Sbjct: 181 GAVEARADSLVALDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L    S  F WLNELIWREFYRHL+  +P++C 
Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPGAL--EDSRVFVWLNELIWREFYRHLLVAFPALCR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF+ WT+ ++W  DS  L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 299 HQPFMRWTKSVKWRVDSQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 359 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FIRHWLPEL +VP +YIH PH W  KN  +L+YP P+VDHK A   TL+ + AAK Q
Sbjct: 419 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAKTQ 475


>gi|108808420|ref|YP_652336.1| deoxyribodipyrimidine photolyase [Yersinia pestis Antiqua]
 gi|167398528|ref|ZP_02304052.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|108780333|gb|ABG14391.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Antiqua]
 gi|167051032|gb|EDR62440.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
          Length = 485

 Score =  575 bits (1482), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 278/477 (58%), Positives = 345/477 (72%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQ--HLDYPVPLVDHKQARLATLAAFEAAKRDS 473


>gi|317491170|ref|ZP_07949606.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920717|gb|EFV42040.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 476

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 273/475 (57%), Positives = 340/475 (71%), Gaps = 3/475 (0%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + H+VW RNDLRITDN+AL+AAC +  AKVIAV+IATPEQW+QH ++ RQ+ FI+ +L  
Sbjct: 3   ATHVVWFRNDLRITDNRALHAACQDPQAKVIAVYIATPEQWKQHDMAPRQAAFIHQNLQC 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L+ K I   YHQC++F  S +WL  +C +  VT LFYNRQYE+NE RRD  + + L
Sbjct: 63  LVHALAGKNIPLFYHQCTDFTASAKWLVDFCQKNEVTDLFYNRQYELNERRRDDAVTELL 122

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                  SFDD++LLPPGS++  + +MYKV+TPFR A +Q L  +D+RSLP P  R    
Sbjct: 123 AGVCGIHSFDDALLLPPGSVVTGSGEMYKVFTPFRNAFLQRLTHSDVRSLPAPKTREQAC 182

Query: 188 VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 P  FDY  Q +D  +FP GE+ AL  LR FC+E V  Y +QRDIPA+ GTS LS
Sbjct: 183 EMSEIKP--FDYSQQGLDSVLFPAGEEAALQRLRVFCREHVQDYAQQRDIPAVDGTSVLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++GVLSPRQC NRL  E  D L   +SGAF WLNEL+WREFYRHL+  +P +C  KP
Sbjct: 241 PYLAVGVLSPRQCLNRLLAECPDTLEDGESGAFVWLNELVWREFYRHLLVAHPKLCRHKP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+ + W+ D   L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 301 FIAWTDHVHWSGDIEHLTAWQQGETGYPIVDAAMRQLNHTGWMHNRLRMIVASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           ++WR GE YFMSQL+DGDLA+NNGGWQWAAS+G D+ PYFRIFNPT QG+RFD +G FIR
Sbjct: 361 INWRAGERYFMSQLIDGDLAANNGGWQWAASSGTDAAPYFRIFNPTTQGERFDKKGDFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP   IH PH W  K    L+YP P+VDH  A   TL  +  AK+++
Sbjct: 421 RWLPELADVPDSDIHHPHQWAMKQCRVLDYPQPLVDHALARKQTLQAFEDAKRRA 475


>gi|329296060|ref|ZP_08253396.1| deoxyribodipyrimidine photolyase [Plautia stali symbiont]
          Length = 477

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/476 (56%), Positives = 343/476 (72%), Gaps = 6/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVWLRNDLRI DN AL AAC  S A+V+A+FIATP QW+QH ++ +Q+ FI+ +L 
Sbjct: 1   MSTHLVWLRNDLRINDNSALAAACRESQAEVLALFIATPGQWQQHSMAPKQAAFIHQNLC 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+SL+++GI   +HQC +F  S+++L ++C Q +V  LFYN QYEINE +RD  +EK+
Sbjct: 61  LLQQSLAERGIKLHFHQCDDFAASVDYLATFCQQHKVDALFYNYQYEINERQRDAAVEKQ 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L Q  V+C+ FDDS+LLPPGS+   +  M+KV+TPF KA I+ L Q        P  R  
Sbjct: 121 LDQQSVVCQGFDDSLLLPPGSVQTGSNSMFKVFTPFSKAFIRRLQQGLPECHHAPKARAR 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV        FDYP +  D   FP GE+ AL  LR+F +++V  Y +QRDIPAI GTS+
Sbjct: 181 APVAAGKKIAAFDYPLEEFDETWFPAGEEAALKQLRQFVQQRVEKYDQQRDIPAIDGTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLSPRQC +R+ +E    L      A  WLNEL+WREFYRHLM  +P++C  
Sbjct: 241 LSPYLAIGVLSPRQCLHRILKEHPQAL--NNGSALVWLNELVWREFYRHLMVTFPALCKH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF+ WT  + W ++   L AW+QG TG+PI+DAAMRQLNT+GWMHNRLRMITASFLVKD
Sbjct: 299 QPFVDWTRNVSWQQNEQYLTAWQQGKTGYPIVDAAMRQLNTLGWMHNRLRMITASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS--TGNDSVPYFRIFNPTIQGKRFDPQG 422
           LL+DWR GE YFM QL+DGDLA+NNGGWQWAAS  TG D+ PYFRIFNPT QG+RFD QG
Sbjct: 359 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTGTDAAPYFRIFNPTTQGERFDKQG 418

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            FIR WLPEL +VP   IH PH+W +KN+  L+YP PIV+HK A   TL+ +  A+
Sbjct: 419 EFIRRWLPELQDVPDSAIHQPHAWAEKNNKKLDYPAPIVEHKAARKKTLDAFERAR 474


>gi|238790472|ref|ZP_04634241.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC
           33641]
 gi|238721416|gb|EEQ13087.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC
           33641]
          Length = 481

 Score =  571 bits (1472), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 280/481 (58%), Positives = 341/481 (70%), Gaps = 14/481 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLR+TDN AL+AAC +  A VIAVF+ATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRLTDNLALHAACQDPQATVIAVFVATPTQWATHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q +L+ + I   YHQC +F  SI+WLD +C Q +V  LFYN+QYE+NE  RD  L  R
Sbjct: 61  QLQTALAARAIPLHYHQCDDFQGSIDWLDDFCQQHQVNVLFYNQQYELNEQLRDNALVAR 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
           L  R + C SF DSVLLPPGS+L    +MYKV+TPFR+A IQ L+ +D  S+P P  R  
Sbjct: 121 LNGRDIACNSFHDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLIMSDCGSVPAPKARSA 180

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
               +  P+TP      FDYP Q +D  +FP GE+ AL  LR FC+E+V  Y +QRD PA
Sbjct: 181 SMEIVPQPLTP------FDYPQQPLDNVLFPAGEEAALQRLRTFCREQVQDYQQQRDFPA 234

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           I  TS LSPYL++G+LSPRQC NRL+ E  ++L     GAF WLNELIWREFYRHL+  Y
Sbjct: 235 IAATSCLSPYLALGILSPRQCVNRLRAECPEVLENADGGAFIWLNELIWREFYRHLLVAY 294

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +C  +PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+A
Sbjct: 295 PRLCQHRPFIGWTDAVVWNHSQQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISA 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RF
Sbjct: 355 SFLVKDLLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           D  G FIR WLPEL  VP   IH P +W  +    L+YPLP+VDHK A   TL  + AAK
Sbjct: 415 DKDGVFIRRWLPELAMVPDSDIHQPWNWAQRQQQPLDYPLPLVDHKAARLATLAAFDAAK 474

Query: 479 K 479
           +
Sbjct: 475 R 475


>gi|304395693|ref|ZP_07377576.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB]
 gi|304356987|gb|EFM21351.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB]
          Length = 474

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/477 (57%), Positives = 345/477 (72%), Gaps = 5/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC +SDAKVIA++++TPEQW+QH +S +Q+ FI+ASLL
Sbjct: 1   MTTHLVWLRNDLRINDNLALHAACRDSDAKVIALYLSTPEQWQQHDMSPKQAAFIHASLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +VQ +L+++GI   Y  C  F DSI+ L  +C +Q+V +LFYN QYE+NE +RD   EKR
Sbjct: 61  EVQSALAERGIPLHYQACHAFSDSIDALAEFCEKQKVDQLFYNYQYEVNERQRDARAEKR 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    VIC+ FDDS+LLPPGS+ +    MYKV+TPF KA ++ L Q+    +P P  R  
Sbjct: 121 LDDAGVICQGFDDSLLLPPGSVQSGDRSMYKVFTPFSKAFVRRLQQSLPECVPAPKPREG 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+  + IP F DYP +A D  +FP GE  AL  LR F  + V  Y  +RD+PA+  TS+
Sbjct: 181 SPLKVTPIPAF-DYPTKAFDEDLFPAGEAAALKRLRHFATKPVIDYPAKRDLPALDATSR 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GVLSPRQC +R+  E  D L    S AF+WLNELIWREFYRHL+  YP++C  
Sbjct: 240 LSVYLATGVLSPRQCLHRVLHEHPDAL--DNSRAFTWLNELIWREFYRHLLVAYPALCRH 297

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT  +EW ++     AWK G TG+PI+DAAMRQ+  +GWMHNRLRMITASFLVKD
Sbjct: 298 QPFIDWTRNVEWQRNDAHFDAWKAGRTGYPIVDAAMRQMKALGWMHNRLRMITASFLVKD 357

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G F
Sbjct: 358 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDEKGDF 417

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IRH+LPEL +VP   IH PH W +K+   L+YP PIVDHK A   TL+ +  AK  +
Sbjct: 418 IRHYLPELADVPDSDIHQPHVWAEKHHKKLDYPAPIVDHKAARKKTLDAFERAKSAA 474


>gi|261344548|ref|ZP_05972192.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
 gi|282567462|gb|EFB72997.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
          Length = 478

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 268/473 (56%), Positives = 340/473 (71%), Gaps = 2/473 (0%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           HLVW R DLR+TDNKAL +AC +SD++VI VFIATP+QW  HG+S RQ  F++ +L+++Q
Sbjct: 5   HLVWFRGDLRVTDNKALSSACQDSDSQVIGVFIATPDQWASHGVSPRQITFMHQNLIELQ 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L+++GI    H  S F DS +WL  Y  QQ+V  LF+N+QYE+NE +RD+ + +  Q 
Sbjct: 65  RALAERGIPLVCHTVSTFADSAKWLLEYAKQQQVKALFFNQQYELNERQRDQWVTQHAQS 124

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             +  S+DD+VL+ PG +     +MY+VYTPFR+A +  L+  D RSLP P  R + P+ 
Sbjct: 125 LNVF-SYDDAVLISPGVVQTQKGEMYQVYTPFRRAFLSQLMMTDYRSLPAPKPR-SEPII 182

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             N    F +    I P F  GEQ AL  LR FC+E+V  Y   RDIP+I GTSQLSPYL
Sbjct: 183 IDNSQPLFPHTPVEIAPQFIAGEQAALAKLRLFCRERVQDYQRDRDIPSIDGTSQLSPYL 242

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           +IG LSPRQC NRL  E   +   P SG FSWLNEL+WREFY HL+  +P +C  +PFI 
Sbjct: 243 AIGTLSPRQCVNRLLAENPHIFDSPDSGGFSWLNELVWREFYSHLLVAFPRLCRHQPFIE 302

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
           WT+ I+WN D     AWK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL+DW
Sbjct: 303 WTQHIQWNPDEDAFTAWKTGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLLIDW 362

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE YF+SQL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQGTFI  WL
Sbjct: 363 RKGEHYFISQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFIHKWL 422

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           PEL NVP Q+IH PH+W + N ++LNYP PIVDHK+A  +TL  + A K+ S+
Sbjct: 423 PELRNVPEQFIHEPHTWAESNQVTLNYPTPIVDHKQARLNTLEAFEAGKRGSM 475


>gi|300715863|ref|YP_003740666.1| deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661]
 gi|299061699|emb|CAX58815.1| Deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661]
          Length = 475

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/477 (55%), Positives = 345/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL+WLRNDLR+ DN AL+AAC ++DA V+A+FIATP QW+ H ++ +Q+ FIY +LL
Sbjct: 1   MATHLIWLRNDLRVHDNYALHAACRDADATVLALFIATPAQWKSHSMAPKQAAFIYQNLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ SL++KGI     QC +F  S+E L  +C Q  V +LFYN QYE+NE +RD   E+R
Sbjct: 61  DVQHSLAEKGIALHTVQCDDFAASVEALSDFCQQHHVDRLFYNYQYEVNERQRDAAAERR 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    +I + FDDS+LLPPGS+L    +MYKV+TPF +A ++ L +     +P P  R  
Sbjct: 121 LFDLDIISQGFDDSLLLPPGSVLTGNREMYKVFTPFSRAFVKRLHEGLPECVPAPKPRQG 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P++ +   + FDYP +A D  +F  GE+ ALH LR FC++ V  Y + R+IPA+ GTS+
Sbjct: 181 APLSKTPEIKPFDYPTEAFDSELFAAGEKAALHQLRHFCQQPVTEYPDTRNIPAVDGTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GVLSPRQC +RL  E    L    S  F WLNELIWREFYRHL+  +P +C  
Sbjct: 241 LSVYLATGVLSPRQCLHRLLAEHPRGL--DDSNVFVWLNELIWREFYRHLLVAWPKLCRY 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           KPFI WT+ ++W      L+AW+QG TG+PI+DAAMRQ+N +GWMHNRLRMI ASFLVKD
Sbjct: 299 KPFIAWTDNVKWQPADKQLEAWQQGKTGYPIVDAAMRQMNQLGWMHNRLRMIVASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAAS+GND+ PYFRIFNPT QG+RFD +G F
Sbjct: 359 LLIDWREGERYFMSQLIDGDLAANNGGWQWAASSGNDAAPYFRIFNPTTQGERFDKEGEF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL +VP ++IH PH W D   ++L+YP P+VDHK+A   TL  + AA+KQS
Sbjct: 419 IRKWLPELKDVPVKHIHQPHIWADNVGVALDYPQPVVDHKEARKRTLEAFEAARKQS 475


>gi|212711667|ref|ZP_03319795.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
           30120]
 gi|212685769|gb|EEB45297.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
           30120]
          Length = 477

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/477 (56%), Positives = 338/477 (70%), Gaps = 3/477 (0%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MSV HLVW RNDLR+TDNKAL  AC +  A VI V+IATPEQW  H +S RQ  F++ +L
Sbjct: 1   MSVCHLVWFRNDLRVTDNKALTFACEDPTATVIGVYIATPEQWATHNVSPRQIAFLHQNL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +++Q +L+++GI    H  + F DS++WL  +  QQ  T L++N QYE+NE  RD+ L +
Sbjct: 61  VELQHALAKRGIPLICHTAATFADSVKWLLDFAQQQNATGLYFNHQYELNERLRDEQLRQ 120

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           + QH  I  ++DD++LLPPGS+      MY+VYTPFR+A +  L+ +D RS P P  R  
Sbjct: 121 QSQHLNIL-TYDDALLLPPGSVTTQKGDMYQVYTPFRRAFLSQLMMSDFRSFPAPKPRGA 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                +  P F     +   P F  GE  AL  LR+FC E+V  Y   RDIPAI GTSQL
Sbjct: 180 ALAVENTHPLFVHQSVET-SPQFIAGEHAALAKLRQFCSERVQDYQRDRDIPAINGTSQL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++GVLSPRQC NRL  E   +    +SG FSWLNELIWREFY HL+  +P +C  +
Sbjct: 239 SPYLALGVLSPRQCVNRLLAENPQVFDSQESGGFSWLNELIWREFYSHLLVAFPRLCRHQ 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ I+WN D  +  AWK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDL
Sbjct: 299 PFIKWTQHIQWNPDDAIFSAWKSGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDL 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR GE YFMSQL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQGTFI
Sbjct: 359 LVDWRKGEHYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           R WLPEL +VP ++IH PH+W + + +SLNYP PIVDHK+A   TL  + A K++S+
Sbjct: 419 REWLPELRDVPEKFIHEPHTWAESHQVSLNYPTPIVDHKQARLMTLEAFEAGKRKSI 475


>gi|183596981|ref|ZP_02958474.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827]
 gi|188023634|gb|EDU61674.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827]
          Length = 483

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/476 (55%), Positives = 338/476 (71%), Gaps = 2/476 (0%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + HLVW RNDLR+TDNKAL +AC + DAKV+AVF ATPEQWR H +S+RQ  F++ +L+ 
Sbjct: 6   ACHLVWFRNDLRVTDNKALSSACADPDAKVLAVFTATPEQWRAHHLSSRQITFLHQNLIA 65

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ SL++  I        +F  + +W+  +  QQ+V  L++N QYE+NE RRD+ L    
Sbjct: 66  LRDSLAKLSIPLFCQTTPDFLSAAQWVLDFAQQQQVDHLYFNHQYELNEHRRDEWLIHHP 125

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186
           Q      +FDD++LLPP S+ N   +MY+VYTPFR+A I  LV  D RSLP P  R    
Sbjct: 126 QRAFRVHAFDDALLLPPKSVTNQKGEMYQVYTPFRRAFISQLVTTDFRSLPAPQPRGEAL 185

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +   ++P F  +    + P FP GE  A   LR+FC+ KV +Y + RDIP+I+GTS LS
Sbjct: 186 AIDDLSLPLFAHHAVDIV-PHFPAGESAARQQLRQFCRLKVQHYQQHRDIPSIEGTSLLS 244

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IGVLSPRQC NRL  E+  L   P SGAF+WLNELIWREFY HL+  +P +C  +P
Sbjct: 245 PYLAIGVLSPRQCLNRLLAEYPPLFDSPDSGAFTWLNELIWREFYHHLLVAFPRLCRHQP 304

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT  I+WN      +AW+ G TG+PI+DAAMRQLNT GWMHNRLRMITASFLVKDLL
Sbjct: 305 FIEWTNHIQWNSSDADFKAWQLGQTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVKDLL 364

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE+YFM QL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQG FIR
Sbjct: 365 IDWRLGEQYFMQQLIDGTLAANNGGWQWSASTGTDAQPWFRIFNPTTQGKKFDPQGAFIR 424

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
            WLPEL +VP +YIH PH W + N ++L+YP PIVDHK+A   TL  + A K  S+
Sbjct: 425 QWLPELQSVPDKYIHTPHEWAEANHVTLDYPAPIVDHKQARLATLAAFEAGKSDSV 480


>gi|327393138|dbj|BAK10560.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355]
          Length = 475

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/475 (57%), Positives = 338/475 (71%), Gaps = 6/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC   DA+VIA+FIATP QW+QH ++ARQ  FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLD 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q SL+++G    +HQC +F  SI++L  +C +Q+V KLFYN QYE+NE  RD   EKR
Sbjct: 61  MLQSSLAERGFPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKR 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L +  V+C+ FDDS+LLPPGSI     +MYKV+TPF KA ++ L Q     +P P  R  
Sbjct: 121 LHEANVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREG 180

Query: 186 GPV-TPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            P+  P ++P F DYP   ID  +FP GEQ A+  LR+F K+ V  Y +QRD+PA+  TS
Sbjct: 181 APLKEPKSLPPF-DYPKADIDTSLFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDSTS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YLS GVLSPRQC +R+  E    L    S A  W+NELIWREFYRHL+  +P +C 
Sbjct: 240 RLSVYLSTGVLSPRQCLHRILHEQPKAL--ESSPAAVWINELIWREFYRHLIVAHPRLCK 297

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF+ WT  + W ++S    AWK G TG+PI+DAAMRQ+ TIGWMHNRLRMITASFLVK
Sbjct: 298 HQPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLVK 357

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G 
Sbjct: 358 DLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGE 417

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR +LPEL  VP   IH PH W  KN+  L+YP PIV+HK A   TL+ +  AK
Sbjct: 418 FIRRYLPELKEVPDSDIHQPHQWAQKNNKKLDYPAPIVEHKDARKKTLDAFERAK 472


>gi|291616713|ref|YP_003519455.1| PhrB [Pantoea ananatis LMG 20103]
 gi|291151743|gb|ADD76327.1| PhrB [Pantoea ananatis LMG 20103]
          Length = 475

 Score =  555 bits (1429), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 273/476 (57%), Positives = 340/476 (71%), Gaps = 8/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC   DA+VIA+FIATP QW+QH ++ARQ  FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLD 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q SL+++GI   +HQC +F  SI++L  +C +Q+V KLFYN QYE+NE  RD   EKR
Sbjct: 61  MLQSSLAERGIPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKR 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L +  V+C+ FDDS+LLPPGSI     +MYKV+TPF KA ++ L Q     +P P  R  
Sbjct: 121 LHEANVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREG 180

Query: 186 GPVT-PSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            P+  P ++P F DYP   ID  +FP GEQ A+  LR+F K+ V  Y +QRD+PA+  TS
Sbjct: 181 TPLKEPKSLPPF-DYPKADIDTSLFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDSTS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-AFSWLNELIWREFYRHLMAFYPSVC 302
           +LS YLS GVLSPRQC +R+  E    L    SG A  W+NELIWREFYRHL+  +P +C
Sbjct: 240 RLSVYLSTGVLSPRQCLHRILHEQPKAL---DSGPAAVWINELIWREFYRHLIVAHPRLC 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PF+ WT  + W ++S    AWK G TG+PI+DAAMRQ+ TIGWMHNRLRMITASFLV
Sbjct: 297 KHQPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLV 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE YF+ QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G
Sbjct: 357 KDLLIDWREGERYFIQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            FIR +LPEL  VP   IH PH W  KN+  L+YP PIV+HK A   TL+ +  AK
Sbjct: 417 EFIRRYLPELKEVPDSDIHQPHQWAQKNNKKLDYPAPIVEHKDARKKTLDAFERAK 472


>gi|268592334|ref|ZP_06126555.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131]
 gi|291312119|gb|EFE52572.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131]
          Length = 480

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/473 (56%), Positives = 335/473 (70%), Gaps = 2/473 (0%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           HL+W RNDLR+TDNKAL +AC + +AKVIA+F ATP+QW+QH ++ RQ  FI+ +L+++Q
Sbjct: 8   HLIWFRNDLRVTDNKALSSACADPNAKVIALFTATPKQWQQHDMAERQISFIHQNLVELQ 67

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL++ GI       ++F D+ +W+  Y   Q+   LF+NRQYE NE +RD+ L  +  H
Sbjct: 68  NSLAELGIPLVCQTVNHFTDAAQWVLDYAKTQQADALFFNRQYEWNEKQRDEWLINQ-PH 126

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +   +FDD +LLPPGS+     +MY+VYTPFR+A +  L   D RSL  P  R      
Sbjct: 127 GLHIHAFDDYLLLPPGSVTTQKGEMYQVYTPFRRAFLTQLTVTDCRSLRAPEKRAAAINI 186

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
              +P F   P +     FP GE++AL  LR+FC  KV  Y   RDIP+I GTSQLSPYL
Sbjct: 187 DKALPLFPHQPIEDFQ-QFPAGEKSALTRLRQFCSLKVGDYQNDRDIPSIDGTSQLSPYL 245

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           ++GVLSPRQC+NRL+ E   +L  P SGAF+WLNEL+WREFY HL+  +P +C  +PFI 
Sbjct: 246 AVGVLSPRQCFNRLQAENPQVLDHPDSGAFTWLNELVWREFYSHLLVAFPRLCRHQPFIQ 305

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
           WT+ I WN  S    AWK G TG+PI+DAAMRQLNT GWMHNRLRMI ASFLVKDLL+DW
Sbjct: 306 WTQHIHWNDSSTDFAAWKTGQTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLVKDLLIDW 365

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE+YFMSQLLDG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FD QG FIRHWL
Sbjct: 366 RKGEKYFMSQLLDGSLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDAQGAFIRHWL 425

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           PEL  VP +YIH PH W   ++ +LNYP PIVDHK+A   TL  + A K+ SL
Sbjct: 426 PELQQVPDKYIHTPHEWAVISNTALNYPEPIVDHKQARLATLAAFEAGKRNSL 478


>gi|317047331|ref|YP_004114979.1| deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b]
 gi|316948948|gb|ADU68423.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b]
          Length = 475

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/477 (55%), Positives = 333/477 (69%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC +  A+V+A+FIATP QW+QH ++ +Q+ FIY SL 
Sbjct: 1   MTTHLVWLRNDLRINDNSALHAACRDPGARVLALFIATPGQWQQHHMAPKQAAFIYQSLC 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+++GI   Y QC +F  S+E L  +C QQ+V +LFYN QYEINE +RD   EKR
Sbjct: 61  LLQAALAERGIPLHYQQCDDFAASLEVLADFCQQQQVDQLFYNYQYEINERQRDAAAEKR 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  + VIC+ FDDS+LL PGS+      M+KV+TPF KA ++ L Q        P  R  
Sbjct: 121 LDDQGVICQGFDDSLLLAPGSVQTGNHTMFKVFTPFSKAFVRRLHQGLPECHMAPRARQG 180

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+        FDYP +  D  +FP GE+ AL  LR F ++ V  Y  +RD PA+ GTS+
Sbjct: 181 APINVEKKIPPFDYPMEDFDVTLFPAGEEAALQQLRHFAQQSVVDYAAERDKPAVDGTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GVLSPRQC +R+ ++  D L      AF WLNELIWREFYRHLM  +P++C  
Sbjct: 241 LSVYLATGVLSPRQCLHRILKQHPDAL--DGGLAFVWLNELIWREFYRHLMVAFPALCKH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF+ WT  + W K+   L AW+QG TG+PI+DAAMRQLN +GWMHNRLRMI A FLVKD
Sbjct: 299 QPFVGWTRHVRWQKNQRHLTAWQQGKTGYPIVDAAMRQLNALGWMHNRLRMIVACFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DW  GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQG F
Sbjct: 359 LLIDWHDGERYFMQQLMDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGAF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP  +IH PH W  KN+++L YP PIV+HK A   TL+ +  A+  +
Sbjct: 419 IRQWLPELAVVPDAHIHQPHVWAQKNNMTLAYPAPIVEHKDARKKTLDAFERARSAA 475


>gi|261341301|ref|ZP_05969159.1| deoxyribodipyrimidine photolyase [Enterobacter cancerogenus ATCC
           35316]
 gi|288316605|gb|EFC55543.1| deoxyribodipyrimidine photolyase [Enterobacter cancerogenus ATCC
           35316]
          Length = 470

 Score =  548 bits (1413), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 266/474 (56%), Positives = 341/474 (71%), Gaps = 8/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC   DA+V+A+FIATPEQW+QH ++ RQ+ ++ A L 
Sbjct: 1   MPTHLVWFRADLRVHDNIALAAACRAKDARVLALFIATPEQWQQHDMAPRQAAYLCAHLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+SL +KGI   Y + S+F   ++ + + C +  VT LFYN QYE NE +RD+ LE R
Sbjct: 61  ELQRSLGEKGIPLIYKEVSDFSAQLQAVQAICDEHDVTHLFYNYQYEFNEQQRDRQLENR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V+C+ FDDSV+LPPGS++    +MYKV+TPF+ A I+ L +A    +  PA R   
Sbjct: 121 LD-TVVCQGFDDSVMLPPGSVMTGNHEMYKVFTPFKNAFIKRLKEALPECVAAPAAR-GE 178

Query: 187 PVTPSNIPRF-FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           P+T  ++P   FDYP QA D  +FP  E+ A+  LR FCK+    Y  QRD PA++GTS+
Sbjct: 179 PLT--DLPALTFDYPQQAFDETLFPADEKAAITQLRHFCKQGAAEYESQRDFPAVEGTSR 236

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS  L++GVLSPRQC +RL  E    L    +GA  WLNEL WREFYRHLM ++P +C  
Sbjct: 237 LSACLALGVLSPRQCLHRLLAEQPQAL-DGAAGAV-WLNELTWREFYRHLMTYHPDLCKH 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WTE ++W ++   L+AW+ G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 295 RPFIRWTENVKWQQNDDRLRAWQNGTTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 355 LLIDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDADGEF 414

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IRHWLPELN VP + IH P +W DK  ++L+YP P+VDHK+A   TL  Y AA+
Sbjct: 415 IRHWLPELNEVPAKAIHEPWTWADKQGVTLDYPRPLVDHKQARVATLAAYEAAR 468


>gi|161504129|ref|YP_001571241.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865476|gb|ABX22099.1| hypothetical protein SARI_02227 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 473

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/475 (54%), Positives = 338/475 (71%), Gaps = 6/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++IATP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYIATPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F  SIE + + C Q  V+ LFYN +YE+NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYEYEVNERQRDAAVEKA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           LQ  VIC+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +P P IR +G
Sbjct: 121 LQS-VICEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRASG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E  A+  LR+FC +    Y  +RD PA++GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAAIAQLRQFCAQGADGYASRRDFPAVEGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVTWQENPHYFQAWRKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR WLP L ++P + IH P  W +K  + L+YP PIVDHK+A   TL+ Y AA+K
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVDHKQARIATLSAYEAARK 471


>gi|323976322|gb|EGB71412.1| DNA photolyase [Escherichia coli TW10509]
          Length = 472

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/476 (53%), Positives = 341/476 (71%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC  S A+V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGGPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHLM ++PS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYHPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W DK+ ++L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWADKSGVTLDYPQPIVDHKEARVRTLAAYEAARK 470


>gi|156934798|ref|YP_001438714.1| deoxyribodipyrimidine photolyase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533052|gb|ABU77878.1| hypothetical protein ESA_02638 [Cronobacter sakazakii ATCC BAA-894]
          Length = 473

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/477 (54%), Positives = 342/477 (71%), Gaps = 7/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC + DA+VI +FIATP+QWR H ++ RQ+ FI+ +L 
Sbjct: 1   MTTHLVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIHQNLE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+++GI     +  +F  +++ L ++C +Q+V+ LFYN QYE+NE RRD  +E+R
Sbjct: 61  ALQQALAKRGIALFTREVPDFAAAVDALAAFCDEQQVSALFYNYQYELNEARRDAAVERR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+ RV C+ FDDSV+LPPGS++    +MYKV+TP+ +A ++ L +     +  P  R  G
Sbjct: 121 LEGRVACQGFDDSVMLPPGSVVTGNGEMYKVFTPYSRAFLRRLGEGLPACVSAPKPRHGG 180

Query: 187 PVT--PSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            +T  P   P  FDYP +  D + FP GE+ AL  LR+FC+     Y E+RD PAI+GTS
Sbjct: 181 AITDVPGLAP--FDYPCETPDALLFPAGEEAALKRLREFCQTAAGDYPEKRDFPAIRGTS 238

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS YL+IGVLSPRQC +RL  E    L +  SGA  WLNELIWREFYRHL+  +P +C 
Sbjct: 239 LLSAYLAIGVLSPRQCLHRLLTEHPRAL-EGGSGAV-WLNELIWREFYRHLIVAWPHLCR 296

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT ++ W ++    QAW +G TG+PI+DAAMRQ+N  GWMHNRLRMITASFLVK
Sbjct: 297 HQPFIDWTARVAWQQNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVK 356

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLLVDWR GE YFMSQL+DGD A+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G 
Sbjct: 357 DLLVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDAEGE 416

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FIR W+PEL+++P + +H PH W  KN  +L YP PIVDHK+A   TL  Y AA+K+
Sbjct: 417 FIRRWVPELSHIPGKAVHEPHLWAKKNGKALRYPQPIVDHKQARVATLAAYEAARKE 473


>gi|331662061|ref|ZP_08362984.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143]
 gi|331060483|gb|EGI32447.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143]
          Length = 472

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/476 (53%), Positives = 338/476 (71%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT+LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTRLFYNYQYEVNERARDAQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W DK+ ++L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWADKSGVTLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|218688505|ref|YP_002396717.1| deoxyribodipyrimidine photolyase [Escherichia coli ED1a]
 gi|218426069|emb|CAR06886.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           ED1a]
          Length = 472

 Score =  535 bits (1378), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/476 (53%), Positives = 337/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFHEVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E   +L   + G  S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|296103357|ref|YP_003613503.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057816|gb|ADF62554.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 470

 Score =  535 bits (1378), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/476 (55%), Positives = 339/476 (71%), Gaps = 10/476 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC +  A+V+A+FIATP QW+QH ++ RQ+ ++ + L 
Sbjct: 1   MPTHLVWFRADLRLHDNIALAAACRSEHARVLALFIATPGQWQQHDMAPRQAAYLCSHLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+SL++KGI   Y + S+F   +  +   C Q  VT LFYN QYE NE +RD+ LE R
Sbjct: 61  ALQRSLAEKGIPLIYKEVSDFTAQLSAVQEVCQQNDVTHLFYNYQYEFNEQQRDRELE-R 119

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   V C+ FDDSV+L PGS++    +MYKV+TPF+ A I+ L +A    +  P+ R  G
Sbjct: 120 ILGDVECQGFDDSVMLAPGSVMTGNREMYKVFTPFKNAFIKRLKEALPECVAAPSAR--G 177

Query: 187 PVTPSNIPRF-FDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               +++P   FDYP QA D  +FP  E+ A+  LR+FCK     Y  +RD PAI+GTS+
Sbjct: 178 ECV-NDLPELTFDYPQQAYDHSLFPADEKAAIAQLRQFCKTGAAAYEARRDFPAIEGTSR 236

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L++GVLSPRQC +RL  E    L   + GA S WLNELIWREFYRHLM ++P +C 
Sbjct: 237 LSACLALGVLSPRQCLHRLLAEQPQAL---EGGAGSVWLNELIWREFYRHLMTYHPELCK 293

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WTE ++W ++  LLQAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVK
Sbjct: 294 HRPFIRWTENVQWQQNEMLLQAWQKGETGYPIVDAAMRQLNETGWMHNRLRMITASFLVK 353

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  GT
Sbjct: 354 DLLIDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQKFDADGT 413

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIRHWLP L  VP + IH P +W DK  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 414 FIRHWLPALKAVPAKAIHDPWAWADKQGVTLDYPRPIVEHKQARVATLAAYEAARK 469


>gi|291281640|ref|YP_003498458.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
           CB9615]
 gi|209776604|gb|ACI86614.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|290761513|gb|ADD55474.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
           CB9615]
 gi|320654283|gb|EFX22336.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659916|gb|EFX27458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 472

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL NVP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|281177846|dbj|BAI54176.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15]
          Length = 472

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 338/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 AIDPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|323967456|gb|EGB62875.1| DNA photolyase [Escherichia coli M863]
 gi|327254382|gb|EGE66004.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_7v]
          Length = 472

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R + 
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGVPECVAAPKVRSS- 178

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            V     P    +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 179 -VMIEAAPSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQSGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARVRTLAAYEAARK 470


>gi|331645860|ref|ZP_08346963.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           M605]
 gi|330910459|gb|EGH38969.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86]
 gi|331044612|gb|EGI16739.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           M605]
          Length = 472

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 338/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIDPA--PSITLNYPCQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|293409079|ref|ZP_06652655.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469547|gb|EFF12031.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 472

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/478 (53%), Positives = 341/478 (71%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++HLVW R DLR+ DN AL AAC  S A+V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTIHLVWFRQDLRLHDNFALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E ++  C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVEQVCAENRVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGTVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHL+ ++PS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W ++    +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIVWTDRVQWQRNPTHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL NVP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRQWLPELRNVPGKAVHEPWKWAEKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|204929858|ref|ZP_03220879.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320852|gb|EDZ06053.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 473

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/477 (53%), Positives = 337/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  QRD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESQRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|168230599|ref|ZP_02655657.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194472292|ref|ZP_03078276.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194458656|gb|EDX47495.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205334675|gb|EDZ21439.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 473

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/477 (53%), Positives = 337/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  QRD PA++GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYASQRDFPAVEGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVMLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|198244498|ref|YP_002214691.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197939014|gb|ACH76347.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326622447|gb|EGE28792.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 473

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/477 (53%), Positives = 337/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ HG++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHGMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEHPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|306812880|ref|ZP_07447073.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101]
 gi|305853643|gb|EFM54082.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101]
 gi|324006250|gb|EGB75469.1| FAD binding domain of DNA photolyase [Escherichia coli MS 57-2]
          Length = 472

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/476 (52%), Positives = 336/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E   +L   + G  S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|15829987|ref|NP_308760.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           Sakai]
 gi|168750637|ref|ZP_02775659.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757158|ref|ZP_02782165.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763986|ref|ZP_02788993.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767146|ref|ZP_02792153.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777031|ref|ZP_02802038.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779189|ref|ZP_02804196.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786859|ref|ZP_02811866.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC869]
 gi|168801385|ref|ZP_02826392.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC508]
 gi|195939049|ref|ZP_03084431.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809646|ref|ZP_03251983.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815503|ref|ZP_03256682.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822977|ref|ZP_03263295.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397896|ref|YP_002269331.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325709|ref|ZP_03441793.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791854|ref|YP_003076691.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224409|ref|ZP_05938690.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261254600|ref|ZP_05947133.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
           coli O157:H7 str. FRIK966]
 gi|13360191|dbj|BAB34156.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767666|gb|EDU31510.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015195|gb|EDU53317.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003074|gb|EDU72060.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355803|gb|EDU74222.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363333|gb|EDU81752.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365922|gb|EDU84338.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373172|gb|EDU91588.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC869]
 gi|189376468|gb|EDU94884.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC508]
 gi|208729447|gb|EDZ79048.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732151|gb|EDZ80839.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737170|gb|EDZ84854.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159296|gb|ACI36729.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209776598|gb|ACI86611.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|209776600|gb|ACI86612.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|209776602|gb|ACI86613.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|209776606|gb|ACI86615.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|217321930|gb|EEC30354.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591254|gb|ACT70615.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O157:H7 str. TW14359]
 gi|320193102|gb|EFW67742.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637955|gb|EFX07724.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           G5101]
 gi|320643350|gb|EFX12530.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str.
           493-89]
 gi|320648699|gb|EFX17332.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. H
           2687]
 gi|320664741|gb|EFX31879.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326341556|gb|EGD65346.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           1044]
 gi|326345773|gb|EGD69512.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           1125]
          Length = 472

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+++A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL NVP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|15800411|ref|NP_286423.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 EDL933]
 gi|12513619|gb|AAG55031.1|AE005249_2 deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
           coli O157:H7 str. EDL933]
          Length = 472

 Score =  531 bits (1369), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+++A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQXNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL NVP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|222032448|emb|CAP75187.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli LF82]
 gi|312945236|gb|ADR26063.1| deoxyribodipyrimidine photolyase [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 472

 Score =  531 bits (1369), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|170681516|ref|YP_001742812.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5]
 gi|300937834|ref|ZP_07152629.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1]
 gi|170519234|gb|ACB17412.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5]
 gi|300457153|gb|EFK20646.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1]
          Length = 472

 Score =  531 bits (1368), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/478 (53%), Positives = 336/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS  +V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDD V+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHL+ +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSIWLNELIWREFYRHLITYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +S  L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|325498130|gb|EGC95989.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ECD227]
          Length = 472

 Score =  531 bits (1368), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/478 (53%), Positives = 337/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSAHVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDD V+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDCVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SLDPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGASQYDQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHLM ++PS+C 
Sbjct: 238 LSASLATGRLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYHPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  AKK +
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEAKKGA 472


>gi|224582537|ref|YP_002636335.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224467064|gb|ACN44894.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322713765|gb|EFZ05336.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 473

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 338/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + ++C Q  V+ LFYN QY+ NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNFCRQHDVSHLFYNYQYQFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|91209744|ref|YP_539730.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89]
 gi|91071318|gb|ABE06199.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89]
          Length = 472

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQMCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P  R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E   +L   + G  S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|110640918|ref|YP_668646.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
 gi|191174072|ref|ZP_03035588.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
 gi|300996480|ref|ZP_07181454.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
 gi|110342510|gb|ABG68747.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
 gi|190905680|gb|EDV65303.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
 gi|300304534|gb|EFJ59054.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
 gi|324010431|gb|EGB79650.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1]
          Length = 472

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 337/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC      Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCLNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E   +L   + G  S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|170769095|ref|ZP_02903548.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627]
 gi|170122167|gb|EDS91098.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627]
          Length = 472

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/476 (53%), Positives = 339/476 (71%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++HLVW R DLR+ DN AL  AC NS A+V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTIHLVWFRQDLRLHDNLALAVACRNSSARVLALYIATPCQWAAHSMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+  V  Y +QRD PA++GTS+
Sbjct: 180 SIDPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGVGQYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G  SPRQC +RL  E    L   + GA S WLNELIWREFYRHL+ +YP++C 
Sbjct: 238 LSASLATGGGSPRQCLHRLLAEQPQAL---EGGAGSVWLNELIWREFYRHLITYYPTLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAQKAGVRLDYPEPIVDHKEARLRTLAAYEAARK 470


>gi|117622905|ref|YP_851818.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1]
 gi|218557628|ref|YP_002390541.1| deoxyribodipyrimidine photolyase [Escherichia coli S88]
 gi|237707328|ref|ZP_04537809.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA]
 gi|115512029|gb|ABJ00104.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1]
 gi|218364397|emb|CAR02076.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           S88]
 gi|226898538|gb|EEH84797.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA]
 gi|294490015|gb|ADE88771.1| deoxyribodipyrimidine photo-lyase [Escherichia coli IHE3034]
 gi|307627874|gb|ADN72178.1| deoxyribodipyrimidine photolyase [Escherichia coli UM146]
 gi|315287176|gb|EFU46588.1| FAD binding domain of DNA photolyase [Escherichia coli MS 110-3]
 gi|320194132|gb|EFW68764.1| Deoxyribodipyrimidine photolyase [Escherichia coli WV_060327]
 gi|323952730|gb|EGB48598.1| DNA photolyase [Escherichia coli H252]
 gi|323958455|gb|EGB54161.1| DNA photolyase [Escherichia coli H263]
          Length = 472

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P  R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E   +L   + G  S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|168238850|ref|ZP_02663908.1| deoxyribodipyrimidine photo-lyase (DNA photolyase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194736598|ref|YP_002113816.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712100|gb|ACF91321.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288345|gb|EDY27726.1| deoxyribodipyrimidine photo-lyase (DNA photolyase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 473

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  QRD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESQRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|16128683|ref|NP_415236.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107566|ref|AP_001346.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160187|ref|YP_001457505.1| deoxyribodipyrimidine photolyase [Escherichia coli HS]
 gi|170080375|ref|YP_001729695.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188495323|ref|ZP_03002593.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638]
 gi|238899973|ref|YP_002925769.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           BW2952]
 gi|256023690|ref|ZP_05437555.1| deoxyribodipyrimidine photolyase [Escherichia sp. 4_1_40B]
 gi|300947213|ref|ZP_07161423.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1]
 gi|301027120|ref|ZP_07190490.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1]
 gi|307137319|ref|ZP_07496675.1| deoxyribodipyrimidine photolyase [Escherichia coli H736]
 gi|331641209|ref|ZP_08342344.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H736]
 gi|130152|sp|P00914|PHR_ECOLI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|147268|gb|AAA24388.1| deoxyribopyrimidine photolyase [Escherichia coli]
 gi|1651311|dbj|BAA35367.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K12 substr. W3110]
 gi|1786926|gb|AAC73802.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. MG1655]
 gi|6006450|emb|CAB56782.1| DNA photolyase [Escherichia coli str. K-12 substr. W3110]
 gi|157065867|gb|ABV05122.1| deoxyribodipyrimidine photolyase [Escherichia coli HS]
 gi|169888210|gb|ACB01917.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188490522|gb|EDU65625.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638]
 gi|238860746|gb|ACR62744.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           BW2952]
 gi|260450139|gb|ACX40561.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli DH1]
 gi|299879409|gb|EFI87620.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1]
 gi|300453199|gb|EFK16819.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1]
 gi|309700930|emb|CBJ00227.1| deoxyribodipyrimidine photolyase [Escherichia coli ETEC H10407]
 gi|315135364|dbj|BAJ42523.1| deoxyribodipyrimidine photolyase [Escherichia coli DH1]
 gi|315614653|gb|EFU95294.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3431]
 gi|323938286|gb|EGB34543.1| DNA photolyase [Escherichia coli E1520]
 gi|323942969|gb|EGB39132.1| DNA photolyase [Escherichia coli E482]
 gi|331038007|gb|EGI10227.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H736]
 gi|332342043|gb|AEE55377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNK88]
          Length = 472

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/476 (53%), Positives = 337/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + PS  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHL+ ++PS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|168264324|ref|ZP_02686297.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205347157|gb|EDZ33788.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 473

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAELPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|288936505|ref|YP_003440564.1| deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22]
 gi|288891214|gb|ADC59532.1| Deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22]
          Length = 480

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/474 (54%), Positives = 328/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIVSHLH 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHTALAERGIPLWVEEAGDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  VIC+ FDDSVLLPPGS++  + +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LRD-VICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +P   +YP    D + F   E+ AL  LR FC++    Y  QRD PA++GTS+L
Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP L+ GVLSPRQC +RL  E    L    +GA +WLNELIWREFYRHLM +YP +C G+
Sbjct: 239 SPCLATGVLSPRQCLHRLLTEHPAAL-DGGAGA-TWLNELIWREFYRHLMVYYPKLCKGR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+K+ W +D   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 297 PFIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+
Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFM 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL  VP + +H P +W DK  + L+YP PIVDHK+A   TL  + AA+K
Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 470


>gi|206580444|ref|YP_002239663.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae 342]
 gi|206569502|gb|ACI11278.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae 342]
          Length = 480

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/474 (54%), Positives = 328/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLH 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  VIC+ FDDSVLLPPGS++  + +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LRD-VICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +P   +YP    D + F   E+ AL  LR FC++    Y  QRD PA++GTS+L
Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP L+ GVLSPRQC +RL  E    L    +GA +WLNELIWREFYRHLM +YP +C G+
Sbjct: 239 SPCLATGVLSPRQCLHRLLTEHPAAL-DGGAGA-TWLNELIWREFYRHLMVYYPKLCKGR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+K+ W +D   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 297 PFIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+
Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFM 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL  VP + +H P +W DK  + L+YP PIVDHK+A   TL  + AA+K
Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 470


>gi|161615066|ref|YP_001589031.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364430|gb|ABX68198.1| hypothetical protein SPAB_02826 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 500

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/479 (52%), Positives = 337/479 (70%), Gaps = 6/479 (1%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           + M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A 
Sbjct: 26  SCMPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQ 85

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +E
Sbjct: 86  LNALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVE 145

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           K L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR+
Sbjct: 146 KTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRV 204

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +G ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS
Sbjct: 205 SGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTS 264

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVC 302
           +LS  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C
Sbjct: 265 RLSASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALC 321

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLV
Sbjct: 322 KHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLV 381

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G
Sbjct: 382 KDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDG 441

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            FIR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 442 EFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 500


>gi|283834013|ref|ZP_06353754.1| deoxyribodipyrimidine photolyase [Citrobacter youngae ATCC 29220]
 gi|291070150|gb|EFE08259.1| deoxyribodipyrimidine photolyase [Citrobacter youngae ATCC 29220]
          Length = 472

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/476 (53%), Positives = 333/476 (69%), Gaps = 6/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC +  A+V+A++IATP QW+ H ++ RQ+ F+ A L 
Sbjct: 1   MTTHLVWFRRDLRLHDNLALAAACRDRSAQVLALYIATPGQWQAHDMAPRQAAFVSAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F  S++ +   CLQ  V++LFYN QYEINE +RD  +EK 
Sbjct: 61  TLQTALAEKGIPLLFHEVADFAASVDTVKRVCLQHGVSRLFYNYQYEINERQRDANVEKS 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  +V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ +       +  P  R +G
Sbjct: 121 LP-QVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRIKDGIPECVSAPKERASG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +          YP Q  D   FP  E+ A+  LR+FC++    Y ++RD PAI GTS+L
Sbjct: 180 ALDAPLTAITLSYPQQEFDAQWFPADEKLAIAQLRQFCQQAAGEYEQRRDFPAINGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC NRL  E    L   + GA S WLNELIWREFYRHLM ++P++C  
Sbjct: 240 SASLATGGLSPRQCLNRLLAEQPQAL---EGGAGSVWLNELIWREFYRHLMTYHPALCRH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WTE+++W  +   LQAW+ G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKD
Sbjct: 297 QPFIRWTERVQWQNNPAHLQAWQTGKTGYPIVDAAMRQLNATGWMHNRLRMIAASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE+YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  G F
Sbjct: 357 LLIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IR WLPEL NVP + IH P SW +    +LNYP PIVDHK+A   TL  Y AA+K+
Sbjct: 417 IRQWLPELRNVPGKAIHNPWSWAENAQATLNYPRPIVDHKQARLATLAAYEAARKE 472


>gi|218704025|ref|YP_002411544.1| deoxyribodipyrimidine photolyase [Escherichia coli UMN026]
 gi|293403952|ref|ZP_06647946.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412]
 gi|298379728|ref|ZP_06989333.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302]
 gi|300900701|ref|ZP_07118851.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1]
 gi|218431122|emb|CAR11998.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           UMN026]
 gi|291428538|gb|EFF01563.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412]
 gi|298279426|gb|EFI20934.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302]
 gi|300355813|gb|EFJ71683.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1]
          Length = 472

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/478 (53%), Positives = 338/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 MIEPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQSGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L   + GA S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---EGGAGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W ++   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIVWTDRVQWQRNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|238911653|ref|ZP_04655490.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 473

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 337/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SI+ + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIKTVKNICRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  QRD PA++GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESQRDFPAVEGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|322615844|gb|EFY12762.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621240|gb|EFY18097.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623660|gb|EFY20498.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628932|gb|EFY25712.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634912|gb|EFY31642.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636560|gb|EFY33264.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641813|gb|EFY38445.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647801|gb|EFY44281.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651869|gb|EFY48238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652634|gb|EFY48983.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658442|gb|EFY54705.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664955|gb|EFY61146.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668375|gb|EFY64531.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670537|gb|EFY66670.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675277|gb|EFY71353.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679703|gb|EFY75744.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684821|gb|EFY80820.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323200590|gb|EFZ85665.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202262|gb|EFZ87310.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205471|gb|EFZ90437.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213490|gb|EFZ98283.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215324|gb|EGA00069.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220237|gb|EGA04693.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323231025|gb|EGA15141.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234142|gb|EGA18231.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238163|gb|EGA22221.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243598|gb|EGA27616.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247378|gb|EGA31337.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251366|gb|EGA35238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258495|gb|EGA42167.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263118|gb|EGA46658.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264721|gb|EGA48223.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272232|gb|EGA55644.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 473

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F  SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMIWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|315299251|gb|EFU58505.1| FAD binding domain of DNA photolyase [Escherichia coli MS 16-3]
          Length = 472

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 251/476 (52%), Positives = 335/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+T F+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTSFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E   +L   + G  S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|323191055|gb|EFZ76320.1| deoxyribodipyrimidine photo-lyase [Escherichia coli RN587/1]
          Length = 472

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC  S A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGMTLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|331672227|ref|ZP_08373018.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280]
 gi|331070422|gb|EGI41786.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280]
          Length = 472

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC  S A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|311280415|ref|YP_003942646.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1]
 gi|308749610|gb|ADO49362.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1]
          Length = 471

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/475 (53%), Positives = 336/475 (70%), Gaps = 7/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC +S AKV+A+FIATP QWRQH ++ RQ+ +I A L 
Sbjct: 1   MTTHLVWFRADLRLHDNLALAAACRDSYAKVLALFIATPGQWRQHRMAPRQAAYIQAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+ KGI     +  +F  S + +   C + +V+ L+YN QYE+NE RRD  +EK 
Sbjct: 61  DLQRNLADKGIPLLLREAEDFAASAQVIRQVCNEHKVSSLYYNYQYELNERRRDARVEKA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+L PGS++    QMYKV+TPF+ A ++ L +     +  P++R  G
Sbjct: 121 LKD-VLCQGFDDSVMLAPGSVMTGDRQMYKVFTPFKNAYLKRLKEGLPECVRAPSVREEG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +     P   +YP    DP +FP  E++A+  LR+FC+++   Y ++RD PA++GTS+L
Sbjct: 180 AIKVCQ-PLKLNYPQTPFDPDLFPADEKSAIARLRQFCQQQAAEYEQKRDFPAMEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L++GVLSPRQC  RL  E    L   + GA S WLNELIWREFYRHLM F+P +C  
Sbjct: 239 SCCLTVGVLSPRQCLRRLLAECSGAL---EGGAGSVWLNELIWREFYRHLMTFHPELCRF 295

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           KPFI WT+ ++W +D   L AW++G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKD
Sbjct: 296 KPFIKWTDNVKWCEDHTRLNAWQRGQTGYPIVDAAMRQLNDTGWMHNRLRMIVASFLVKD 355

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F
Sbjct: 356 LLIDWREGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGEF 415

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR WLPEL +VP + +H+P  W DK   +++YP PIVDH +A   TL  Y AA+K
Sbjct: 416 IRRWLPELKDVPDKALHSPWQWADKEGGTIDYPRPIVDHPQARLETLAAYEAARK 470


>gi|323170823|gb|EFZ56473.1| deoxyribodipyrimidine photo-lyase [Escherichia coli LT-68]
          Length = 472

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/478 (53%), Positives = 336/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + PS  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K++
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKEA 472


>gi|301647446|ref|ZP_07247253.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1]
 gi|301074420|gb|EFK89226.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1]
          Length = 472

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + PS  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHL+ ++PS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDQGGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|26246677|ref|NP_752717.1| deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
 gi|227884323|ref|ZP_04002128.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
 gi|300989880|ref|ZP_07179009.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
 gi|301046034|ref|ZP_07193214.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
 gi|26107076|gb|AAN79260.1|AE016757_164 Deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
 gi|227838409|gb|EEJ48875.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
 gi|300301951|gb|EFJ58336.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
 gi|300407283|gb|EFJ90821.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
 gi|307552561|gb|ADN45336.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972]
 gi|315292023|gb|EFU51375.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1]
          Length = 472

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 336/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC      Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCLNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E   +L   + G  S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQVL---EGGPGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|197250843|ref|YP_002145681.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214546|gb|ACH51943.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 473

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 337/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SI+ + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIKTVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|205351986|ref|YP_002225787.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271767|emb|CAR36601.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627026|gb|EGE33369.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 473

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGRAIHEPWRWAEKAGVVLDYPRPIVEHKQARISTLSAYEAARKGA 473


>gi|168467738|ref|ZP_02701575.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195629172|gb|EDX48540.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 473

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|16764079|ref|NP_459694.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992982|ref|ZP_02574077.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262487|ref|ZP_03162561.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|207856166|ref|YP_002242817.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|20141633|sp|P25078|PHR_SALTY RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|16419217|gb|AAL19653.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|197240742|gb|EDY23362.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205328867|gb|EDZ15631.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|206707969|emb|CAR32258.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261245973|emb|CBG23775.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992447|gb|ACY87332.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157301|emb|CBW16789.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911734|dbj|BAJ35708.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084977|emb|CBY94766.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321226285|gb|EFX51336.1| Deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129020|gb|ADX16450.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987646|gb|AEF06629.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 473

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|331651706|ref|ZP_08352725.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           M718]
 gi|331049984|gb|EGI22042.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           M718]
          Length = 472

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|194444359|ref|YP_002039947.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403022|gb|ACF63244.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 473

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAELFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|168240558|ref|ZP_02665490.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448497|ref|YP_002044740.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194406801|gb|ACF67020.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339950|gb|EDZ26714.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 473

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|167552876|ref|ZP_02346627.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322586|gb|EDZ10425.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 473

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 336/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|293413984|ref|ZP_06656633.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185]
 gi|291434042|gb|EFF07015.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185]
          Length = 472

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/476 (53%), Positives = 337/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHL+ ++PS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL++WR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLINWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL NVP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|323971992|gb|EGB67212.1| DNA photolyase [Escherichia coli TA007]
          Length = 472

 Score =  528 bits (1360), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 254/476 (53%), Positives = 336/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + PS  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHL+ ++PS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLNDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|320175355|gb|EFW50459.1| Deoxyribodipyrimidine photolyase [Shigella dysenteriae CDC 74-1112]
          Length = 472

 Score =  528 bits (1359), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/478 (53%), Positives = 335/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + PS  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|215485731|ref|YP_002328162.1| deoxyribodipyrimidine photolyase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312965140|ref|ZP_07779377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75]
 gi|215263803|emb|CAS08139.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312290231|gb|EFR18114.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75]
          Length = 472

 Score =  528 bits (1359), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 334/478 (69%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAVHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDD V+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHL+ +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSIWLNELIWREFYRHLITYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +S  L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|301020834|ref|ZP_07184898.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1]
 gi|300398480|gb|EFJ82018.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1]
          Length = 472

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC  S A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  RLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQ W++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQVWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|1827916|pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase
 gi|1827917|pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase
          Length = 471

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/475 (53%), Positives = 336/475 (70%), Gaps = 9/475 (1%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L  
Sbjct: 1   TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNG 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ L
Sbjct: 61  LQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           ++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G 
Sbjct: 121 RN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGS 179

Query: 188 VTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           + PS  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 IEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 237

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHL+ ++PS+C  
Sbjct: 238 SASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCKH 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKD
Sbjct: 295 RPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKD 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G F
Sbjct: 355 LLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEF 414

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 IRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 469


>gi|187734160|ref|YP_001879362.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94]
 gi|187431152|gb|ACD10426.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94]
          Length = 472

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/478 (53%), Positives = 335/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFIASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + PS  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|82543137|ref|YP_407084.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227]
 gi|81244548|gb|ABB65256.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227]
 gi|320183678|gb|EFW58518.1| Deoxyribodipyrimidine photolyase [Shigella flexneri CDC 796-83]
 gi|332097668|gb|EGJ02643.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 3594-74]
          Length = 472

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACSNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + PS  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|200390561|ref|ZP_03217172.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603006|gb|EDZ01552.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 473

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 335/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVRALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|209917958|ref|YP_002292042.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11]
 gi|293432976|ref|ZP_06661404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088]
 gi|300823005|ref|ZP_07103140.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7]
 gi|331667072|ref|ZP_08367937.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           TA271]
 gi|331676388|ref|ZP_08377085.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H591]
 gi|209911217|dbj|BAG76291.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11]
 gi|291323795|gb|EFE63217.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088]
 gi|300524546|gb|EFK45615.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7]
 gi|324020349|gb|EGB89568.1| FAD binding domain of DNA photolyase [Escherichia coli MS 117-3]
 gi|331065428|gb|EGI37321.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           TA271]
 gi|331075881|gb|EGI47178.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H591]
          Length = 472

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/478 (53%), Positives = 335/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + PS  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGDYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|284920486|emb|CBG33548.1| deoxyribodipyrimidine photolyase [Escherichia coli 042]
          Length = 472

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/478 (52%), Positives = 337/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VLCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W ++    +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|218699057|ref|YP_002406686.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI39]
 gi|218369043|emb|CAR16797.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           IAI39]
          Length = 472

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 334/478 (69%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS  +V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDD V+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIDPA--PSITLNYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHLM +YP +C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPLLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W ++    +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|333010183|gb|EGK29618.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-272]
 gi|333021140|gb|EGK40397.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-227]
          Length = 472

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIVWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL NVP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRRWLPELRNVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|168820166|ref|ZP_02832166.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343136|gb|EDZ29900.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 473

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 335/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT ++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTIRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|218549732|ref|YP_002383523.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ATCC
           35469]
 gi|218357273|emb|CAQ89908.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia
           fergusonii ATCC 35469]
          Length = 472

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/478 (53%), Positives = 337/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A+ IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALNIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PV-TPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + T  +I    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIETAPSIT--LNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGRLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  AKK +
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEAKKGA 472


>gi|74311231|ref|YP_309650.1| deoxyribodipyrimidine photolyase [Shigella sonnei Ss046]
 gi|73854708|gb|AAZ87415.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
           sonnei Ss046]
 gi|323163860|gb|EFZ49670.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 53G]
          Length = 472

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + PS  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHL+ ++PS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGVGSVWLNELIWREFYRHLITYHPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +P I WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPIIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDLEGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL NVP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRQWLPELRNVPGKSVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|238893748|ref|YP_002918482.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae NTUH-K2044]
 gi|238546064|dbj|BAH62415.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 480

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/474 (54%), Positives = 325/474 (68%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q + + LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQASHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  VIC+ FDDSVLLPPGS+L    +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +P   +YP    D + F   E+ AL  LR FC++    Y  QRD PA++GTS+L
Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP L+IGVLSPRQC +RL  E    L    +GA +WLNELIWREFYRHLM +YP +C G+
Sbjct: 239 SPCLAIGVLSPRQCLHRLLTEHPAAL-DGGAGA-TWLNELIWREFYRHLMVYYPKLCKGR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF  WT+K+ W  +   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 297 PFTAWTDKVAWRAEEAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI
Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL  VP + +H P +W DK  ++L+Y  PIVDHK+A   TL  + AA+K
Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQETLAAWEAARK 470


>gi|331682139|ref|ZP_08382761.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H299]
 gi|331080563|gb|EGI51739.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H299]
          Length = 472

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/476 (53%), Positives = 333/476 (69%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSASVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTDNHEMYKVFTPFQNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGMTLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|193070647|ref|ZP_03051584.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019]
 gi|260866839|ref|YP_003233241.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O111:H- str. 11128]
 gi|300906963|ref|ZP_07124633.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1]
 gi|301305193|ref|ZP_07211291.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1]
 gi|192956035|gb|EDV86501.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019]
 gi|257763195|dbj|BAI34690.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O111:H- str. 11128]
 gi|300401266|gb|EFJ84804.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1]
 gi|300839505|gb|EFK67265.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1]
 gi|315257624|gb|EFU37592.1| FAD binding domain of DNA photolyase [Escherichia coli MS 85-1]
 gi|323180055|gb|EFZ65611.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1180]
          Length = 472

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + PS  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|110804662|ref|YP_688182.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401]
 gi|110614210|gb|ABF02877.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401]
 gi|332760931|gb|EGJ91219.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 4343-70]
 gi|333008008|gb|EGK27484.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-218]
          Length = 472

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|152969283|ref|YP_001334392.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954132|gb|ABR76162.1| deoxyribodipyrimidine photolyase (photoreactivation) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 480

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 257/474 (54%), Positives = 325/474 (68%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSVLLPPGS+L    +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LCD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +P   +YP    D + F   E+ AL  LR FC++    Y  QRD PA++GTS+L
Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP L+IGVLSPRQC +RL  E    L    +GA +WLNELIWREFYRHLM +YP +C G+
Sbjct: 239 SPCLAIGVLSPRQCLHRLLTEHPAAL-DGGAGA-TWLNELIWREFYRHLMVYYPKLCKGR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF  WT+K+ W  +   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 297 PFTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI
Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL  VP + +H P +W DK  ++L+Y  PIVDHK+A   TL  + AA+K
Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQETLAAWEAARK 470


>gi|324114816|gb|EGC08784.1| DNA photolyase [Escherichia fergusonii B253]
          Length = 472

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 335/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E R
Sbjct: 61  GLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVE-R 119

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 120 ARRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+  +  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SLDPA--PSITLNYPRQSFDTAHFPVEEKAVIAQLRQFCQSGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHLM ++PS+C 
Sbjct: 238 LSASLATGRLSPRQCLHRLLAEQPQAL---DGGAGSVWLNELIWREFYRHLMTYHPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  AKK +
Sbjct: 415 FIRQWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAVYEEAKKGA 472


>gi|260597109|ref|YP_003209680.1| deoxyribodipyrimidine photolyase [Cronobacter turicensis z3032]
 gi|260216286|emb|CBA29241.1| Deoxyribodipyrimidine photo-lyase [Cronobacter turicensis z3032]
          Length = 473

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 261/475 (54%), Positives = 337/475 (70%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC + DA+VI +FIATP+QWR H ++ RQ+ FI+ +L 
Sbjct: 1   MTTHLVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIHQNLE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+ +GI     +  +F  +++ L ++C +Q+V  LFYN QYE+NE RRD  + +R
Sbjct: 61  ALQQALATRGIALFTREAPDFAAAVDALAAFCDEQQVAALFYNYQYELNEARRDAAVARR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+ RV C+ FDDSV+LPPGS +    +MYKV+TP+ +A I+ L +     +  P  R  G
Sbjct: 121 LEGRVACQGFDDSVMLPPGSAVTGNGEMYKVFTPYSRAFIRRLGEGLPPCVSAPKPRAGG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +T +     FDYP +  D M FP GE+ AL  LR FC+     Y E+RD PAI+GTS L
Sbjct: 181 ALTDAPALAPFDYPCETPDGMLFPAGEEAALKRLRDFCRHDAGDYPEKRDFPAIRGTSLL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IGVLSPRQC +RL  E    L +  SGA  WLNELIWREFYRHL+  +P +C  +
Sbjct: 241 SPYLAIGVLSPRQCLHRLLTEHPRAL-EGGSGAV-WLNELIWREFYRHLIVAWPHLCRHQ 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT ++ W ++    QAW +G TG+PI+DAAMRQ+N  GWMHNRLRMITASFLVKDL
Sbjct: 299 PFIDWTARVAWQRNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR GE YFMSQL+DGD A+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI
Sbjct: 359 LVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDAEGEFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R W+PEL+++P + +H PH W  KN  +L YP PIVDHK+A   TL  Y AA+K+
Sbjct: 419 RRWVPELSHIPGKAVHEPHVWAKKNGKALRYPQPIVDHKQARVATLAAYEAARKE 473


>gi|300918366|ref|ZP_07134966.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1]
 gi|300414429|gb|EFJ97739.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1]
          Length = 472

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/476 (53%), Positives = 335/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDHEGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|194433989|ref|ZP_03066260.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012]
 gi|194417754|gb|EDX33852.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012]
 gi|332096470|gb|EGJ01466.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 155-74]
          Length = 472

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSVSLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W+ K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWVQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|191167217|ref|ZP_03029036.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A]
 gi|309797420|ref|ZP_07691812.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7]
 gi|190902765|gb|EDV62495.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A]
 gi|308118944|gb|EFO56206.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7]
          Length = 472

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 335/478 (70%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|323947030|gb|EGB43044.1| DNA photolyase [Escherichia coli H120]
          Length = 472

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/478 (53%), Positives = 334/478 (69%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + PS  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGDYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|16759651|ref|NP_455268.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142576|ref|NP_805918.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163180|ref|ZP_03348890.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213865098|ref|ZP_03387217.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289826651|ref|ZP_06545657.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25291449|pir||AI0587 deoxyribodipyrimidine photolyase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501943|emb|CAD05171.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138207|gb|AAO69778.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 473

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/477 (52%), Positives = 334/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q +RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|194439253|ref|ZP_03071333.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1]
 gi|253774322|ref|YP_003037153.1| deoxyribodipyrimidine photolyase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160778|ref|YP_003043886.1| deoxyribodipyrimidine photolyase [Escherichia coli B str. REL606]
 gi|300929490|ref|ZP_07144958.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1]
 gi|194421838|gb|EDX37845.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1]
 gi|253325366|gb|ACT29968.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972679|gb|ACT38350.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli B
           str. REL606]
 gi|253976873|gb|ACT42543.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           BL21(DE3)]
 gi|300462599|gb|EFK26092.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1]
 gi|313848579|emb|CAQ31174.2| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
           coli BL21(DE3)]
 gi|323963088|gb|EGB58658.1| DNA photolyase [Escherichia coli H489]
          Length = 473

 Score =  525 bits (1353), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/478 (53%), Positives = 334/478 (69%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|320179459|gb|EFW54416.1| Deoxyribodipyrimidine photolyase [Shigella boydii ATCC 9905]
          Length = 472

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +M+KV+TPF+ A ++ L +     + VP +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMHKVFTPFKNAWLKRLREGMPECVAVPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|170020947|ref|YP_001725901.1| deoxyribodipyrimidine photolyase [Escherichia coli ATCC 8739]
 gi|169755875|gb|ACA78574.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 8739]
          Length = 472

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/478 (53%), Positives = 334/478 (69%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|300816355|ref|ZP_07096577.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1]
 gi|300531045|gb|EFK52107.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1]
          Length = 472

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 334/478 (69%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|24112014|ref|NP_706524.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 301]
 gi|30062127|ref|NP_836298.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 2457T]
 gi|24050832|gb|AAN42231.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
           flexneri 2a str. 301]
 gi|30040372|gb|AAP16104.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
           flexneri 2a str. 2457T]
 gi|281599976|gb|ADA72960.1| Deoxyribodipyrimidine photolyase [Shigella flexneri 2002017]
 gi|313649656|gb|EFS14080.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2a str. 2457T]
 gi|332761188|gb|EGJ91474.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2747-71]
 gi|332763978|gb|EGJ94216.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-671]
 gi|332768197|gb|EGJ98382.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2930-71]
 gi|333021492|gb|EGK40742.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-304]
          Length = 472

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/476 (52%), Positives = 334/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP +W  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRKWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|333007384|gb|EGK26864.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri VA-6]
          Length = 472

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/476 (52%), Positives = 333/476 (69%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A   TL  Y  A+K
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYETARK 470


>gi|56414171|ref|YP_151246.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363094|ref|YP_002142731.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128428|gb|AAV77934.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094571|emb|CAR60092.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 473

 Score =  525 bits (1351), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/477 (52%), Positives = 334/477 (70%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DW +GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWWLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 417 IRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|82775975|ref|YP_402322.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197]
 gi|309786366|ref|ZP_07680992.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617]
 gi|81240123|gb|ABB60833.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197]
 gi|308925760|gb|EFP71241.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617]
          Length = 472

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/476 (53%), Positives = 334/476 (70%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFQNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   F + E+ A+  LR+FC+     Y +QRD PA +GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFLVEEKAAIAQLRQFCQNGAGEYEQQRDFPAAEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 415 FIRQWLPELRDVPGKVVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|260853943|ref|YP_003227834.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O26:H11 str. 11368]
 gi|257752592|dbj|BAI24094.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O26:H11 str. 11368]
 gi|323153779|gb|EFZ40026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa14]
          Length = 472

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/476 (53%), Positives = 333/476 (69%), Gaps = 9/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG++     +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVKTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + PS  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPS--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARK 470


>gi|307315377|ref|ZP_07594947.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W]
 gi|306905271|gb|EFN35815.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W]
 gi|315059950|gb|ADT74277.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
           coli W]
 gi|323379489|gb|ADX51757.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli KO11]
          Length = 472

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 334/478 (69%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|157154932|ref|YP_001461868.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A]
 gi|218553235|ref|YP_002386148.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI1]
 gi|218694131|ref|YP_002401798.1| deoxyribodipyrimidine photolyase [Escherichia coli 55989]
 gi|256021218|ref|ZP_05435083.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
 gi|300926110|ref|ZP_07141923.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1]
 gi|301327896|ref|ZP_07221069.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1]
 gi|332282445|ref|ZP_08394858.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
 gi|157076962|gb|ABV16670.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A]
 gi|218350863|emb|CAU96561.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           55989]
 gi|218360003|emb|CAQ97550.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           IAI1]
 gi|300417809|gb|EFK01120.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1]
 gi|300845580|gb|EFK73340.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1]
 gi|323185134|gb|EFZ70500.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1357]
 gi|332104797|gb|EGJ08143.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
          Length = 472

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 333/478 (69%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|312970785|ref|ZP_07784964.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70]
 gi|310336546|gb|EFQ01713.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70]
          Length = 472

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 333/478 (69%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FD SV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|146310870|ref|YP_001175944.1| deoxyribodipyrimidine photolyase [Enterobacter sp. 638]
 gi|145317746|gb|ABP59893.1| deoxyribodipyrimidine photo-lyase type I [Enterobacter sp. 638]
          Length = 470

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/474 (53%), Positives = 325/474 (68%), Gaps = 6/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC +  A+V+AVFIATP+QWRQH ++ RQ+ ++ A L 
Sbjct: 1   MTTHLVWFRADLRLHDNIALAAACRSQHARVLAVFIATPDQWRQHDMAPRQAAYLRAHLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ L+++GI   Y + S+F      +   C Q  VT LFYN QYE NE +RD+ LEK 
Sbjct: 61  GLQQGLAERGIPLIYEEVSDFAAQSAKVQQLCQQHDVTHLFYNYQYEFNEQQRDRQLEKM 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V+C+ FDDSV+LPPGS++    +MYKV+TPF+ A ++ L +     +  PA+R   
Sbjct: 121 LDG-VVCQGFDDSVMLPPGSVMTGNHEMYKVFTPFKNAYVKRLKEGLPECVAAPAVREQK 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              P +    F+YP Q  D  +FP  E+ A+  LR FC+     Y  +RD P+I GTS+L
Sbjct: 180 --LPPSAEIEFNYPQQDFDAELFPASEKAAIAQLRHFCQHGAGEYEARRDFPSIDGTSRL 237

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L++GVLSPRQC +RL  E    L   +     WLNELIWREFYRHLM ++P +C  +
Sbjct: 238 SACLALGVLSPRQCLHRLLAEQPRALDGGEGSV--WLNELIWREFYRHLMTYHPDLCKHR 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ ++W  D  LLQAW+ G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDL
Sbjct: 296 PFIRWTDNVQWQHDDVLLQAWQDGKTGYPIVDAAMRQLNETGWMHNRLRMIVASFLVKDL 355

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFM+QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 356 LIDWRAGERYFMAQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDATGEFI 415

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLP L  VP + +H P  W DK  ++L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 416 RKWLPSLRGVPIKSLHEPWVWADKTGVTLDYPRPIVDHKQARVATLAAYEAARK 469


>gi|237730671|ref|ZP_04561152.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2]
 gi|226906210|gb|EEH92128.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2]
          Length = 472

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/475 (52%), Positives = 332/475 (69%), Gaps = 6/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC +  A V+A++I+TPEQW+ H ++ RQ+  + A L 
Sbjct: 1   MTTHLVWFRRDLRLHDNLALAAACRDRSAHVLALYISTPEQWKAHDMAPRQAALVNAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E + + C+Q  V+++FYN QYEINE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVGDFATSVETVKNVCVQHGVSRMFYNYQYEINERQRDAAVEKS 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  +V+C+ FDDSV+LP G+++    +MYKV+TPF+ A ++ +       +  P +R +G
Sbjct: 121 LP-QVVCEGFDDSVILPAGAVMTGNHEMYKVFTPFKNAWLKRIKDGIPECVSAPKVRESG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +          YP Q  D   FP  E+ A+  LR FC++    Y + RD PAI GTS+L
Sbjct: 180 ALDSPLTSITLSYPQQDFDSQQFPAEEKLAIAQLRHFCQQAAGEYEQLRDFPAIDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC NRL  E    L   + GA S WLNELIWREFYRHLM ++P++C  
Sbjct: 240 SASLATGGLSPRQCLNRLLVEQPQAL---EDGAGSVWLNELIWREFYRHLMTYHPALCRY 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT++++W  +   LQAWK G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTDRVQWQNNPTHLQAWKTGNTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE+YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  G F
Sbjct: 357 LLIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR W+PEL +VP + IH P SW +K  ++L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 417 IRQWVPELRDVPGKAIHEPWSWAEKAQVTLSYPRPIVDHKQARLATLAAYEAARK 471


>gi|193065554|ref|ZP_03046622.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
 gi|194429065|ref|ZP_03061596.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
 gi|260842916|ref|YP_003220694.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O103:H2 str. 12009]
 gi|192926843|gb|EDV81469.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
 gi|194412896|gb|EDX29187.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
 gi|257758063|dbj|BAI29560.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O103:H2 str. 12009]
 gi|320198176|gb|EFW72780.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B]
 gi|323158756|gb|EFZ44769.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010]
          Length = 472

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/478 (52%), Positives = 333/478 (69%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|283784466|ref|YP_003364331.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168]
 gi|282947920|emb|CBG87482.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168]
          Length = 472

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/477 (53%), Positives = 327/477 (68%), Gaps = 7/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW R DLR+ DN AL AAC +S A+V+A++I+TP QW +H +S RQ+ FI A L 
Sbjct: 1   MSTHLVWFRCDLRLHDNLALAAACRSSTARVLALYISTPAQWTKHTMSPRQAAFIAAQLE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+ KGI   + + ++FD S+E + + C    VT LFYN QYE+NE  RD  +EK 
Sbjct: 61  ALQQALADKGIPLLFEETADFDASVETVKAVCESHDVTHLFYNYQYELNERERDAAVEKA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+ +VIC+ FDDSV+LPPGS++    +MYKV+TPF+ A ++ L +        P  R   
Sbjct: 121 LR-KVICEGFDDSVILPPGSVMTGNHEMYKVFTPFKNAWLKRLKEGMPECAAAPKARDRA 179

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            V P       +YP Q  D  +FP+ E+  +  LR+FC++    Y  QRD PA  GTS+L
Sbjct: 180 AVAPQQ-KITLNYPQQQFDRTLFPVDEKAVIAQLRQFCQQGAGEYEHQRDFPATDGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     GA S WLNELIWREFYRHLM   P++C  
Sbjct: 239 SASLATGGLSPRQCLHRLLAEHPQAL---DGGAGSVWLNELIWREFYRHLMTRNPALCKH 295

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W  ++   QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 296 RPFIAWTDRVAWRDNAAHFQAWQEGKTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 355

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  G F
Sbjct: 356 LLIDWRKGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEF 415

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR W+PEL  VP + IH P  W +   ++L+YP P+VDHK+A   TL  Y AA+K +
Sbjct: 416 IRRWIPELREVPGKAIHEPWKWANSVGVTLSYPQPVVDHKQARATTLAAYEAARKGA 472


>gi|329998823|ref|ZP_08303226.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3]
 gi|328538550|gb|EGF64657.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3]
          Length = 461

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 253/465 (54%), Positives = 320/465 (68%), Gaps = 5/465 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  VIC+ FDDSVLLPPGS+L    +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +P   +YP    D + F   E+ AL  LR FC++    Y  QRD PA++GTS+L
Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP L+IGVLSPRQC +RL  E    L    +GA +WLNELIWREFYRHLM +YP +C G+
Sbjct: 239 SPCLAIGVLSPRQCLHRLLTEHPAAL-DGGAGA-TWLNELIWREFYRHLMVYYPKLCKGR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF  WT+K+ W  +   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 297 PFTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI
Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           R WLPEL  VP + +H P +W DK  ++L+Y  PIVDHK+A   T
Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQET 461


>gi|197287042|ref|YP_002152914.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
 gi|194684529|emb|CAR46324.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
          Length = 476

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 253/473 (53%), Positives = 316/473 (66%), Gaps = 3/473 (0%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           VHLVW R+DLR+TDNKAL+ AC N+ A+V A+F  TP QW+ H ++  Q  FI+ +LL +
Sbjct: 6   VHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDALLNL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L++  I         + D+ + +  YC Q +VT LF+N QY +NE  RDK + + L 
Sbjct: 66  SHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVMELLA 125

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-TGP 187
           H      + D+V +PPG+++    +MYKV+TPFR A ++  +  D  SLP P IR     
Sbjct: 126 HNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAHQKA 185

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V+P + P  F  P  +   MFP  EQ AL  L++FC E+V +Y + RDIPAI GTSQLSP
Sbjct: 186 VSPLSAP-LFALPISSTK-MFPASEQAALQRLKQFCYERVIHYAKWRDIPAIDGTSQLSP 243

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+IG++S RQC+NRL +   D L    S  F W NEL+WREFY+HL+   PS+     F
Sbjct: 244 YLAIGLVSVRQCFNRLYQTEPDFLENNHSSTFVWFNELVWREFYQHLIVANPSLSKQIAF 303

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            PWTE I W  D     AW QG TGFPIIDAAMRQLN  GWMHNRLRM+TASFLVKDLL+
Sbjct: 304 QPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVKDLLI 363

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRIFNPT QG++FDP G FIRH
Sbjct: 364 DWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFIRH 423

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           WLPEL +VP +YIH P  W  K    L+YP PIVDH KA    +  Y  AKK+
Sbjct: 424 WLPELADVPDRYIHTPSEWAIKTGHYLDYPQPIVDHAKARVTAIASYEEAKKR 476


>gi|324116248|gb|EGC10169.1| DNA photolyase [Escherichia coli E1167]
          Length = 472

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 252/478 (52%), Positives = 332/478 (69%), Gaps = 9/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIEPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G LSPRQC +RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLSPRQCLHRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G 
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGE 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL +VP + +H P  W  K  + L+YP  IVDHK+A   TL  Y  A+K +
Sbjct: 415 FIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQLIVDHKEARLRTLAAYEEARKGA 472


>gi|227354710|ref|ZP_03839129.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906]
 gi|227165220|gb|EEI50045.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906]
          Length = 476

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/473 (53%), Positives = 316/473 (66%), Gaps = 3/473 (0%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           VHLVW R+DLR+TDNKAL+ AC N+ A+V A+F  TP QW+ H ++  Q  FI+ +LL +
Sbjct: 6   VHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDALLNL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L++  I         + D+ + +  YC Q +VT LF+N QY +NE  RDK + + L 
Sbjct: 66  SHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVMELLA 125

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-TGP 187
           H      + D+V +PPG+++    +MYKV+TPFR A ++  +  D  SLP P IR     
Sbjct: 126 HNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAHQKT 185

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V+P + P  F  P  +   MFP  EQ AL  L++FC E+V +Y + RDIPAI GTSQLSP
Sbjct: 186 VSPLSAP-LFALPISSTK-MFPASEQAALQRLKQFCYERVIHYAKWRDIPAIDGTSQLSP 243

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+IG++S RQC+NRL +   D L    S AF W NEL+WREFY+HL+   PS+     F
Sbjct: 244 YLAIGLVSVRQCFNRLYQTEPDFLENNHSSAFVWFNELVWREFYQHLIVANPSLSKQIAF 303

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            PWTE I W  D     AW QG TGFPIIDAAMRQLN  GWMHNRLRM+TASFLVKDLL+
Sbjct: 304 QPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVKDLLI 363

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRIFNPT QG++FDP G FIRH
Sbjct: 364 DWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFIRH 423

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           WLPEL +VP + IH P  W  K    L+YP PIVDH KA    +  Y  AKK+
Sbjct: 424 WLPELADVPDRDIHTPSEWAIKTGHYLDYPQPIVDHAKARVTAIASYEEAKKR 476


>gi|294637450|ref|ZP_06715740.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685]
 gi|291089391|gb|EFE21952.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685]
          Length = 477

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/473 (51%), Positives = 320/473 (67%), Gaps = 4/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ H+VWLRNDLR+TDN+AL+AAC + DA+V+A+++ATP QW+   ++ RQ+ FI+ +L 
Sbjct: 1   MTTHVVWLRNDLRVTDNRALHAACADPDARVLALYVATPRQWQAQDMAPRQAQFIWQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L+ + I       +++    + +  +C Q + T LF+NRQYE+NE RRD+ L   
Sbjct: 61  CLRLELAARHIALHGLSVADYAAQRQAVAHFCAQHQATALFFNRQYELNERRRDEALCAT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   + C  FDD++LLPPG++L  A QM+KV+TPF+ A +Q L Q D   LP P  R   
Sbjct: 121 LS--IPCHGFDDALLLPPGAVLTAAGQMFKVFTPFKHAFLQALGQQDNAPLPAP-TRRAY 177

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           P  P  +   FDYP   +D  +FP GE  A   L  FC+  +  Y  +RD PA  GTS L
Sbjct: 178 PCAPPPVLPTFDYPAATVDATLFPAGEAAAQARLAHFCRTDLATYAVRRDFPAQAGTSLL 237

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++GV+SPRQC   L+   +D       G  +WLNELIWREFYRHL+  +P +C  +
Sbjct: 238 SPYLTLGVVSPRQCLAVLQSGMLDSPNAASGGGAAWLNELIWREFYRHLLVAWPDLCRHR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF+PWT +I W  D   L+ W+QG TGFP+IDAAMRQLN  GWMHNRLRM+TASFLVKDL
Sbjct: 298 PFLPWTARIRWRDDEQGLRRWQQGMTGFPLIDAAMRQLNHCGWMHNRLRMLTASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+R+D QG FI
Sbjct: 358 LIDWRLGERYFLSQLIDGDLAANNGGWQWAASTGCDAAPYFRIFNPTTQGQRYDAQGQFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R WLP L +VP   IH P  W  +    L+YP P+VDH +A   TL  +  A+
Sbjct: 418 RRWLPALKDVPDSEIHHPQRWALRQRRVLDYPDPMVDHARARQDTLLAFQRAR 470


>gi|238920766|ref|YP_002934281.1| deoxyribodipyrimidine photo-lyase [Edwardsiella ictaluri 93-146]
 gi|238870335|gb|ACR70046.1| deoxyribodipyrimidine photo-lyase [Edwardsiella ictaluri 93-146]
          Length = 471

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/470 (52%), Positives = 321/470 (68%), Gaps = 9/470 (1%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +WLR+DLR+TDN+AL+AAC +  A+V+A+++ATP QW    ++ RQ+ FI+ +LL +Q +
Sbjct: 1   MWLRSDLRMTDNRALHAACADVRARVVALYVATPRQWLAQEMAPRQAQFIWQNLLALQVT 60

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L Q+ I        ++      +   CL++R   LF NRQYE+NE RRD  L   L   +
Sbjct: 61  LGQRQIPLYCLSVDDYAAQARAVREVCLRERADALFVNRQYELNERRRDDALAAALT--I 118

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
            C  FDD++LL PG++L  A QM+KV+TPF++A ++ L+ ADLR LP P+ R  G   P 
Sbjct: 119 PCHFFDDALLLAPGTVLTGAGQMFKVFTPFKRAFLRGLMSADLRVLPAPSPRQPGSAPPV 178

Query: 192 NIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
              RF +YP   +D  +FP GE  A   L +FC   +  Y  +RD PA  GTSQLSPYL+
Sbjct: 179 QAERF-NYPDAEVDSALFPAGEAAAQTRLVQFCHGALAAYAARRDFPAQAGTSQLSPYLT 237

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           +GVLSPRQC   L+ +    L+ P   SGA +WLNELIWREFYRHL+  +P +C  +PFI
Sbjct: 238 LGVLSPRQCLAALQPQ---ALVSPGLSSGAEAWLNELIWREFYRHLLVAWPDLCRHRPFI 294

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           PWT +I W  D   L  W+QG TGFP++DAAMRQLN  GWMHNRLRM+TASFLVKDLL+D
Sbjct: 295 PWTARIRWRDDPAGLLRWQQGMTGFPLVDAAMRQLNRCGWMHNRLRMLTASFLVKDLLID 354

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+GE YF+ QLLDGDLA+NNGGWQWAASTG+D+ PYFRIFNP +QG+R+DPQG FIR W
Sbjct: 355 WRLGERYFLRQLLDGDLAANNGGWQWAASTGSDAAPYFRIFNPRVQGQRYDPQGQFIRRW 414

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           LPEL +VP   IH P  W  +    L+YP P VDH +A   TL  +  A+
Sbjct: 415 LPELRDVPDSDIHHPQRWALRRQRVLDYPDPQVDHARARQDTLLAFARAR 464


>gi|237747870|ref|ZP_04578350.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13]
 gi|229379232|gb|EEO29323.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13]
          Length = 498

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 236/480 (49%), Positives = 321/480 (66%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +A      HLVW R DLR+TDNKAL AAC + DA V A+F A   QW +HG+S RQ  F+
Sbjct: 4   QAGNPSRKHLVWFRQDLRLTDNKALAAACEDKDATVYALFTAPLSQWEEHGVSERQVAFM 63

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           +  L ++ + L + GI    H C NFDD+  ++  +C ++++  +F+N QYE+NE RRD+
Sbjct: 64  HRHLEKLSEGLERIGIPLVCHVCGNFDDAARFVIDFCRREQIDDVFFNNQYELNEQRRDR 123

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            LE  L        +DD +LLPPG+  N   +MY+V+TPF++  ++ L  AD  SLP P 
Sbjct: 124 WLEDNLPQETSLNRYDDCLLLPPGAANNRQGEMYRVFTPFKRTFLEKLGSADTGSLPQPE 183

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            RL       +   FF Y   +    +  GE+ A+ +L  FC+EKV+ Y + RD P + G
Sbjct: 184 RRLHVTRIKGSSSPFFPYEKVSFGAEYTPGEEAAIALLENFCREKVHDYDKTRDRPDLDG 243

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS++S YL+IGVLSPRQC N L  E  D + + K G   WLNEL+WREFY HL+A +P +
Sbjct: 244 TSRVSAYLAIGVLSPRQCLNALLAEVPDAIWQSKGGGAVWLNELVWREFYYHLIAAFPRL 303

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           C  +PF+ WT++I WN +    +AW +G TG+PI+DAAMR+L   GWMHNRLRMI ASFL
Sbjct: 304 CRYEPFLEWTDRIVWNANEADFRAWVEGRTGYPIVDAAMRELKETGWMHNRLRMIVASFL 363

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDLLVDWR GE YFMSQL+DG+L +NNGGWQW+ASTG D++P+FRIFNP  QG++FDP 
Sbjct: 364 VKDLLVDWRKGERYFMSQLIDGNLPANNGGWQWSASTGVDAMPWFRIFNPVTQGQKFDPA 423

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           G ++R WLPEL +VP   IH P  W  KN + L+YP P+VDH++A   TLN + A ++++
Sbjct: 424 GHYVRRWLPELKDVPEGDIHTPQLWAKKNHVVLDYPDPVVDHRQAREKTLNAFNAVRQKA 483


>gi|269139942|ref|YP_003296643.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda EIB202]
 gi|267985603|gb|ACY85432.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda EIB202]
 gi|304559777|gb|ADM42441.1| Deoxyribodipyrimidine photolyase [Edwardsiella tarda FL6-60]
          Length = 471

 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/468 (51%), Positives = 317/468 (67%), Gaps = 5/468 (1%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +WLR+DLR+TDN+AL+AAC ++ A+V+A+++ATP QW    ++ RQ+ FI+ +L  +Q++
Sbjct: 1   MWLRSDLRMTDNRALHAACADARARVVALYVATPRQWLAQEMAPRQAQFIWQNLSALQEA 60

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L Q+ I        ++      +   CL++R   LF NRQYE+NE RRD  L   L    
Sbjct: 61  LGQRQIPLYCLSVDDYAAQARTVREVCLRERADALFANRQYELNERRRDDALAAALP--F 118

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
            C  FDD++LL PG++L  A  M+KV+TPF++A ++ L  ADLR LP P+ R      P+
Sbjct: 119 PCHFFDDALLLAPGAVLTGAGAMFKVFTPFKRAFLRGLASADLRVLPAPSPRQPIAAAPT 178

Query: 192 NIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
            + R  DYP  A+D  +FP GE  A   L +FC   +  Y  +RD PA  GTSQLSPYL+
Sbjct: 179 PVARV-DYPDAAVDSALFPAGETAAQVRLAQFCHGALATYAARRDFPAQAGTSQLSPYLT 237

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           +GVLSPRQC     +        P SGA +WLNELIWREFYRHL+  +P +C  +PFIPW
Sbjct: 238 LGVLSPRQC-LAALQAQALASPSPSSGAEAWLNELIWREFYRHLLVAWPDLCRHRPFIPW 296

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T +I W  D   LQ W+QG TGFP++DAAMRQLN  GWMHNRLRM+TASFLVKDLL+DWR
Sbjct: 297 TARIRWRDDPAGLQRWQQGMTGFPLVDAAMRQLNRCGWMHNRLRMLTASFLVKDLLIDWR 356

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           +GE YF+ QL+DGDLA+NNGGWQWAASTG+D+ PYFRIFNP +QG+R+DPQG FIR WLP
Sbjct: 357 LGERYFLRQLIDGDLAANNGGWQWAASTGSDAAPYFRIFNPRVQGQRYDPQGQFIRRWLP 416

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           EL  VP   IH P  W  +    L+YP P+VDH +A   TL  +  A+
Sbjct: 417 ELREVPDSDIHHPQRWALRQRRVLDYPDPLVDHARARQDTLLAFARAR 464


>gi|297521407|ref|ZP_06939793.1| deoxyribodipyrimidine photolyase [Escherichia coli OP50]
          Length = 452

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/456 (52%), Positives = 319/456 (69%), Gaps = 9/456 (1%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88
           AC NS A+V+A++IATP QW  H +S RQ+  I A L  +Q +L++KGI   + +  +F 
Sbjct: 2   ACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFV 61

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            S+E +   C +  VT LFYN QYE+NE  RD  +E+ L++ V+C+ FDDSV+LPPG+++
Sbjct: 62  ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN-VVCEGFDDSVILPPGAVM 120

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF-FDYPFQAIDPM 207
               +MYKV+TPF+ A ++ L +     +  P +R +G + P+  P    +YP Q+ D  
Sbjct: 121 TGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPA--PSITLNYPRQSFDTA 178

Query: 208 -FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
            FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS  L+ G LSPRQC +RL  E
Sbjct: 179 HFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAE 238

Query: 267 FVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
               L     GA S WL+ELIWREFYRHLM +YPS+C   PFI WT++++W  +   LQA
Sbjct: 239 QPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQA 295

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDL
Sbjct: 296 WQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDL 355

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           A+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P  
Sbjct: 356 AANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWK 415

Query: 446 WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 416 WAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 451


>gi|62179298|ref|YP_215715.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62126931|gb|AAX64634.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 446

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/432 (53%), Positives = 309/432 (71%), Gaps = 6/432 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + ++C Q  V+ LFYN QY+ NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNFCRQHDVSHLFYNYQYQFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEF 416

Query: 425 IRHWLPELNNVP 436
           IR WLP L ++P
Sbjct: 417 IRQWLPALRDMP 428


>gi|323193139|gb|EFZ78358.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
          Length = 427

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/431 (53%), Positives = 302/431 (70%), Gaps = 6/431 (1%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           ++ RQ+ FI A L  +Q +L++KGI   +H+ ++F  SIE + + C Q  V+ LFYN QY
Sbjct: 1   MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQY 60

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
           E NE +RD  +EK L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L + 
Sbjct: 61  EFNERQRDAAVEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 119

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYV 231
               +P P IR++G ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y 
Sbjct: 120 IPPCVPAPKIRVSGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYE 179

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREF 290
            +RD PA+ GTS+LS  L+ G LSPRQC +RL  E    L     G  S WLNELIWREF
Sbjct: 180 SRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREF 236

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           YRHLM +YP++C  +PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMH
Sbjct: 237 YRHLMIWYPALCKHQPFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMH 296

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFN
Sbjct: 297 NRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFN 356

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           PT QG+RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   T
Sbjct: 357 PTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIAT 416

Query: 471 LNQYYAAKKQS 481
           L+ Y AA+K +
Sbjct: 417 LSAYEAARKGA 427


>gi|213428164|ref|ZP_03360914.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 427

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/431 (52%), Positives = 300/431 (69%), Gaps = 6/431 (1%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           ++ RQ+ FI A L  +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QY
Sbjct: 1   MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQY 60

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
           E NE +RD  +EK L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L + 
Sbjct: 61  EFNERQRDAAVEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 119

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYV 231
               +P P IR++G ++    P   +YP QA D  +FP+ E   +  LR FC +    Y 
Sbjct: 120 IPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYA 179

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREF 290
            +RD PA+ GTS+LS  L+ G LSPRQC +RL  E    L     G  S WLNELIWREF
Sbjct: 180 SRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREF 236

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           YRHLM +YP++C  +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMH
Sbjct: 237 YRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMH 296

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFN
Sbjct: 297 NRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFN 356

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           PT Q +RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   T
Sbjct: 357 PTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIAT 416

Query: 471 LNQYYAAKKQS 481
           L+ Y AA+K +
Sbjct: 417 LSAYEAARKGA 427


>gi|213581260|ref|ZP_03363086.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 426

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/428 (53%), Positives = 298/428 (69%), Gaps = 6/428 (1%)

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
           RQ+ FI A L  +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE N
Sbjct: 3   RQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFN 62

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E +RD  +EK L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +    
Sbjct: 63  ERQRDAAVEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPP 121

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQR 234
            +P P IR++G ++    P   +YP QA D  +FP+ E   +  LR FC +    Y  +R
Sbjct: 122 CVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRR 181

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRH 293
           D PA+ GTS+LS  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRH
Sbjct: 182 DFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRH 238

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           LM +YP++C  +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRL
Sbjct: 239 LMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRL 298

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT 
Sbjct: 299 RMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTT 358

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q +RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ 
Sbjct: 359 QRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSA 418

Query: 474 YYAAKKQS 481
           Y AA+K +
Sbjct: 419 YEAARKGA 426


>gi|300957650|ref|ZP_07169842.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1]
 gi|300315627|gb|EFJ65411.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1]
          Length = 395

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/397 (54%), Positives = 284/397 (71%), Gaps = 9/397 (2%)

Query: 86  NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPG 145
           +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ L++ V+C+ FDDSV+LPPG
Sbjct: 3   DFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN-VVCEGFDDSVILPPG 61

Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF-FDYPFQAI 204
           +++    +MYKV+TPF+ A ++ L +     +  P +R +G + PS  P    +YP Q+ 
Sbjct: 62  AVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPS--PSITLNYPRQSF 119

Query: 205 DPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS  L+ G LSPRQC +RL
Sbjct: 120 DTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRL 179

Query: 264 KEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             E    L     GA S WLNELIWREFYRHL+ ++PS+C  +PFI WT++++W  +   
Sbjct: 180 LAEQPQAL---DGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAH 236

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+D
Sbjct: 237 LQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLID 296

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
           GDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H 
Sbjct: 297 GDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHE 356

Query: 443 PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 357 PWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 393


>gi|331656728|ref|ZP_08357690.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           TA206]
 gi|331054976|gb|EGI26985.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           TA206]
          Length = 382

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/387 (54%), Positives = 279/387 (72%), Gaps = 9/387 (2%)

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
           C + R+T LFYN QYE+NE  RD   E+ L++ V+C+ FDDSV+LPPG+++    +MYKV
Sbjct: 2   CAENRITHLFYNYQYEVNERARDVQAERTLRN-VVCEGFDDSVILPPGAVMTGNHEMYKV 60

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF-FDYPFQAIDPM-FPIGEQNA 215
           +TPF+ A ++ L +     +  P +R +G + P+  P    +YP Q+ D   FP+ E+ A
Sbjct: 61  FTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPA--PSITLNYPRQSFDTAHFPVEEKAA 118

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           +  LR+FC+     Y +QRD PA++GTS+LS  L+ G LSPRQC +RL  E   +L   +
Sbjct: 119 IAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQVL---E 175

Query: 276 SGAFS-WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            G  S WLNELIWREFYRHLM +YPS+C  +PFI WT++++W  +   L+AW++G TG+P
Sbjct: 176 GGPGSVWLNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYP 235

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           I+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+NNGGWQW
Sbjct: 236 IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 295

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
           AASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P  W  K  ++L
Sbjct: 296 AASTGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWAQKAGMTL 355

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +YP PIVDHK+A   TL  Y  A+K +
Sbjct: 356 DYPQPIVDHKEARLRTLAAYEEARKGA 382


>gi|89073732|ref|ZP_01160246.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
 gi|89050507|gb|EAR55999.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
          Length = 489

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/476 (46%), Positives = 311/476 (65%), Gaps = 13/476 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R+DLR+ DN AL  A   S   +IA+FIATP QW QH ++A Q  FI+  L  +++
Sbjct: 12  IIWFRSDLRVVDNTALNHAI-ESGLPIIALFIATPMQWHQHNMAAVQVDFIHRRLQVLKQ 70

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+++ I  Q  + ++F +S+  ++  C+      +F N+QY INE +RD  + + L  +
Sbjct: 71  QLAKRNIPLQVIEVNDFSESVYLIEQVCIDYNAVHVFANKQYPINEHKRDNSVGELLAKK 130

Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV- 188
            I  S FDD+ +L P  +L    +++KV+TPFR A I+    +    + + +  +T  V 
Sbjct: 131 SIKFSIFDDNYILQPEMVLTRDGELFKVFTPFRNAWIKRFSSSTCYPVTINSDIVTSGVV 190

Query: 189 ----TPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               + S+  + F+YP   ID  ++P+ E+     L  FC+ K   Y + RD PAI GTS
Sbjct: 191 SKLLSDSSQIKAFNYPI--IDSVLWPVDEETIAQRLETFCETKAETYHQNRDFPAIDGTS 248

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
            LSPYL+IG LS RQC ++L++ F +   I    GAF+WLNE++WREFY HL+  YP + 
Sbjct: 249 CLSPYLAIGALSARQCLHQLQQYFPNAFEINKDDGAFTWLNEIVWREFYGHLLHRYPELS 308

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PF  +T+ ++W  D  LL+AW++G TGFPI+DA MRQL   GWMHNRLRMITASFL 
Sbjct: 309 KHQPFQKFTQFVKWKDDEALLKAWQEGKTGFPIVDAGMRQLRATGWMHNRLRMITASFLT 368

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL DWR+GE++FM  L+DGD +SNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP+G
Sbjct: 369 KDLLCDWRVGEQWFMQHLIDGDFSSNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPKG 428

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            FIR W+ EL +VP +YIH PH W  +   SLNYPLPIVDHK+A    +  +  AK
Sbjct: 429 DFIRTWVKELEHVPDKYIHTPHQWASEE--SLNYPLPIVDHKEARLIAIESFKQAK 482


>gi|90577743|ref|ZP_01233554.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14]
 gi|90440829|gb|EAS66009.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14]
          Length = 489

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/487 (46%), Positives = 311/487 (63%), Gaps = 14/487 (2%)

Query: 1   MKATTAMSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           M   T    H+V W R+DLR+ DN AL  A  +S   +IA+FIATP QW QH ++A Q  
Sbjct: 1   MTNKTVTEQHVVIWFRSDLRVVDNTALNHAI-DSGLPIIALFIATPMQWHQHNMAAVQVD 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI+  L  +++ L+++ I  Q  + ++F +S+  +D  C       +F N+QY INE +R
Sbjct: 60  FIHRRLQVLKQQLAKRNIPLQVIEVNDFAESVHVIDQICFDYNAVHVFANKQYPINEQQR 119

Query: 120 DKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D    + +  + I  S FDD+ +L P ++L    +++KV+TPFR A I+    +    + 
Sbjct: 120 DNSAGELIAKKGIKFSIFDDNYILQPETVLTRDGELFKVFTPFRNAWIKRFTLSPCYPVT 179

Query: 179 VPAIRLTGP-----VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVE 232
                +T       ++ SN  + F+YP   ID  ++P+ E+     L  F + K   Y +
Sbjct: 180 KDGYIVTSDAVIKLLSVSNPIKAFNYPI--IDSVLWPVDEETIAQRLETFFETKAETYHQ 237

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFY 291
            RD PAI GTS LSPYL+IG LS RQC  +L + F + L I    GAF+WLNE++WREFY
Sbjct: 238 NRDFPAIDGTSCLSPYLAIGALSARQCLYQLLQHFPNALEINKDDGAFTWLNEIVWREFY 297

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            HL+  YP +   +PF  +T  ++W  D+ LL+AW++G TGFPI+DAAMRQL + GWMHN
Sbjct: 298 GHLLHRYPELSQYQPFQKFTRFVQWKDDAVLLKAWQEGKTGFPIVDAAMRQLRSTGWMHN 357

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRMITASFL KDLL DWR+GE++FM  L+DGD ASNNGGWQWAASTG D+ PYFR+FNP
Sbjct: 358 RLRMITASFLTKDLLCDWRVGEQWFMQHLIDGDFASNNGGWQWAASTGTDAQPYFRVFNP 417

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
           T+QG+RFDP+G FIR W+ EL +VP +YIH PH W      SLNYPLPIVDHK+A    +
Sbjct: 418 TLQGQRFDPKGDFIRTWVKELEHVPDKYIHTPHQWASAE--SLNYPLPIVDHKEARLIAI 475

Query: 472 NQYYAAK 478
             +  AK
Sbjct: 476 ESFKQAK 482


>gi|330448252|ref|ZP_08311900.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492443|dbj|GAA06397.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 489

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/476 (48%), Positives = 304/476 (63%), Gaps = 13/476 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R+DLR  DN AL  A   +   VIA+F+ATP QW +H ++A Q  FI+  L  +++
Sbjct: 12  IIWFRDDLRTVDNTALNHAI-ETGLPVIALFVATPMQWHEHHVAAIQIDFIHRRLRVLKQ 70

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I  Q  QC++F +S++ +  YC Q RV  +F N+QY +NE  RD+ L   L   
Sbjct: 71  QLAALNIPLQVMQCNDFSESVDAIAEYCHQHRVVHVFANKQYPLNEQLRDEKLGVLLAQS 130

Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRL 184
            I +S FDD+ +L P +ILN   +++KV+TP+R A I+       +S PV      A+  
Sbjct: 131 GIKQSLFDDNYVLEPETILNREGELFKVFTPYRNAWIKRFSAE--QSYPVTTNKEVALSD 188

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           T     ++        +  I+  ++P+ E+  L  L  FC  K   Y +QRD PAI GTS
Sbjct: 189 TTSAMLADSTDIQSLGYPVIESVLWPVDEEAILQRLDTFCVTKAQDYHQQRDFPAIDGTS 248

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
            LSP+L+IG LS RQC  +L + F   L +  + GAF+WLNE+IWREFY HL+  YP + 
Sbjct: 249 CLSPFLAIGALSARQCVYQLLQHFPHALEVNKEDGAFTWLNEIIWREFYGHLLHRYPELS 308

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
              PF  +T+ + W  +  LL+AW+ G TGFPI+DAAMRQL   GWMHNRLRMITASFL 
Sbjct: 309 KNHPFQDYTQYVRWQDNPILLKAWQDGKTGFPIVDAAMRQLRATGWMHNRLRMITASFLT 368

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL DWR GE++FM  L+DGD ASNNGGWQWAASTG DS PYFRIFNPT+QG+RFDP+G
Sbjct: 369 KDLLCDWRAGEQWFMQHLIDGDFASNNGGWQWAASTGTDSQPYFRIFNPTLQGQRFDPKG 428

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            FIR W+ EL  VP +YIH PH W   +  SL+YPLPIVDHK+A    +  +  AK
Sbjct: 429 DFIRTWVKELAKVPDKYIHTPHQW--DSSGSLDYPLPIVDHKEARLLAIEAFKQAK 482


>gi|332093770|gb|EGI98824.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 5216-82]
          Length = 406

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/407 (52%), Positives = 284/407 (69%), Gaps = 9/407 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LRN-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRF-FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P+  P    +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+
Sbjct: 180 SIKPA--PSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCM 303
           LS  L+ G L PRQC  RL  E    L     GA S WL+ELIWREFYRHLM +YPS+C 
Sbjct: 238 LSASLATGGLLPRQCLYRLLAEQPQAL---DGGAGSVWLSELIWREFYRHLMTYYPSLCK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVK
Sbjct: 295 HRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYF+  N
Sbjct: 355 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFQSDN 401


>gi|262274043|ref|ZP_06051855.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886]
 gi|262221853|gb|EEY73166.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886]
          Length = 483

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/477 (46%), Positives = 285/477 (59%), Gaps = 11/477 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR+ DN AL  AC + +  VIA++  TP QW+ H ++  Q+  I   L+ +
Sbjct: 1   MKLVWFRRDLRVKDNVALTEACKSGEP-VIAIYYETPVQWKAHALAPMQADLIQRRLVTL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L    I   +     + D  + L   C Q ++  +F  R YE +EV RD  +   L 
Sbjct: 60  RQELETLNIPLLFRSVDRYKDINQSLAQLCQQYQIADIFCTRDYETDEVDRDNAIAGMLS 119

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                   FD   +  PG + N A   Y+V+TPF+KA I    Q DL  +  P+   T  
Sbjct: 120 LTGTTLHRFDYKCIFAPGMVTNGAGNTYRVFTPFKKAWITQATQLDLSPIGAPSPVKTDA 179

Query: 188 VT------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +T      P  I   F YP Q     +PI +   +  LR FC+ +V +Y   RD PAI G
Sbjct: 180 LTSALLRQPCQIA--FRYP-QCDSVGWPIDDSAIIQRLRDFCRYRVDHYQATRDFPAIPG 236

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSPYL+IG +SPRQC  RL  E  + + K   GA  WL+ELIWREFY+H+ A Y  V
Sbjct: 237 TSQLSPYLAIGAISPRQCLARLLAEVPNCMEKDAGGAHVWLSELIWREFYQHIAAAYIDV 296

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             GK F  WT+ IEWN+D    Q WKQG TGFPI+DAAMRQLN  GWMHNRLRMI ASFL
Sbjct: 297 SKGKAFQDWTDNIEWNRDELQFQRWKQGKTGFPIVDAAMRQLNDTGWMHNRLRMIVASFL 356

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D+ PYFR+FNP  Q K+FDP 
Sbjct: 357 VKDLHIDWRWGERYFMSKLIDGDFAANNGGWQWSASTGTDAQPYFRVFNPASQSKKFDPN 416

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
             FIR WL EL +VP   +H PH W +K  + L+YP PIVDHK A    +  +  AK
Sbjct: 417 VRFIRRWLKELESVPDSALHTPHIWAEKKGIELSYPAPIVDHKTARISAIEMFEMAK 473


>gi|90411278|ref|ZP_01219290.1| Deoxyribodipyrimidine photolyase [Photobacterium profundum 3TCK]
 gi|90327807|gb|EAS44138.1| Deoxyribodipyrimidine photolyase [Photobacterium profundum 3TCK]
          Length = 488

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/477 (48%), Positives = 294/477 (61%), Gaps = 10/477 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + L+W R+DLRITDN AL  ACH S   VIA++IATP+QW +H ++  Q   I   LL 
Sbjct: 5   GLQLIWFRSDLRITDNTALIHACH-SGRPVIALYIATPKQWYEHTVAPIQIDLIQRRLLV 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L    I     +  ++    E + +   Q  ++ +F N+Q E NE +RD  + + L
Sbjct: 64  LQQQLHTLNIPLLICEVDDYTSIPELMKNLVNQHHISHVFCNKQDEWNEKQRDHSVNQAL 123

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + +V    FDDS  + PG +       +KV+TPFR+  +         + P P   +  
Sbjct: 124 VEKQVKVSIFDDSCAIAPGRVKTKQGGTFKVFTPFRREWLNVYHSLLPEAQPAPQAVVLH 183

Query: 187 PVTP-----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           P+T      S     F YP +     +P+ E +    L+ FC EKV+ Y E RDIPAI G
Sbjct: 184 PITSELLAQSATSVSFSYP-EKDSAFWPVEEDDIRRQLQAFCLEKVHLYNEHRDIPAIDG 242

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSPYL+IG LS RQC + L+ EF   L   + GAF WLNELIWREFYRHL   Y  +
Sbjct: 243 TSCLSPYLAIGALSVRQCISILRSEFPHCLESSEQGAFIWLNELIWREFYRHLTESYGKL 302

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +PF  WT KI W      L+ W+QG TGFPI+DAAM+QL   GWMHNRLRMI ASFL
Sbjct: 303 SRNQPFHAWTTKIRWRSADDELKCWQQGETGFPIVDAAMKQLLATGWMHNRLRMIVASFL 362

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDLL+DWR GE++FMSQL+DGD ASNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP 
Sbjct: 363 TKDLLIDWREGEKWFMSQLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPN 422

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           G FIR W+ EL +VP +YIH PH W   N  +LNYP PIVDHK+A    +  +  AK
Sbjct: 423 GDFIRKWIKELKDVPNKYIHTPHLWDGAN--TLNYPKPIVDHKQARLLAIETFKQAK 477


>gi|269104447|ref|ZP_06157143.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161087|gb|EEZ39584.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 494

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/491 (45%), Positives = 301/491 (61%), Gaps = 24/491 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S +L+W R+DLRITDN AL   C N    VIA++IATP QW QH ++  Q   I   L  
Sbjct: 13  SHNLMWFRSDLRITDNTALSEVC-NQSLPVIALYIATPMQWHQHHVAPIQVDLIKRRLAV 71

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L++  I     +  +FD ++E ++  CL   +  +  N QY +NE  RD+ L   L
Sbjct: 72  LTEQLAELSIPLIVLETEDFDSTVEKIEEICLMFNIASVHCNNQYLVNEEHRDQKLAANL 131

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + +++    +DD   L PGS+LN   + +KV+TP+ KA ++   Q  +   P   +  T 
Sbjct: 132 KRYQISLVQYDDDCALAPGSVLNKQGEPFKVFTPYSKAWLKQYKQQTVE--PTAMVGNTH 189

Query: 187 PVTPSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                 I              F YP Q     +P+ ++  L  L  FC +KV  Y +QRD
Sbjct: 190 KELSQEIEELLAVCGTVQHYDFQYP-QVSSLTWPVDDEVILQHLYSFCCDKVGVYHQQRD 248

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD---LLIKPKSGAFSWLNELIWREFYR 292
            P+++GTS LSPYL+IG LS RQC   +++  VD   L I  + G F W+NELIWREFY 
Sbjct: 249 YPSLEGTSTLSPYLAIGALSVRQCLKAVQQ--VDPSCLEINKECGGFVWVNELIWREFYH 306

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HLMA Y  +C G+PF  +T+ + WN+DSH L+AW+QG TGFPI+DAAMRQL   GWMHNR
Sbjct: 307 HLMAEYKHLCKGQPFQAYTQYVTWNEDSHYLKAWQQGKTGFPIVDAAMRQLQQTGWMHNR 366

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMITASFL KDLL+ W  GE +F+  L+DGD ASNNGGWQWAASTG D+ PYFR+FNPT
Sbjct: 367 LRMITASFLTKDLLLHWHHGERWFLQHLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPT 426

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            QG+RFDP+G FIR W+PEL +VP +YIH PH W         YP PI+DHK+A    + 
Sbjct: 427 TQGERFDPEGEFIRKWIPELVDVPNKYIHTPHLWHGDKK---GYPAPIIDHKQARLRAIE 483

Query: 473 QYYAAKKQSLL 483
            +  AK+ + L
Sbjct: 484 VFKNAKEINTL 494


>gi|219682219|ref|YP_002468603.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621952|gb|ACL30108.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086037|gb|ADP66119.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086610|gb|ADP66691.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/486 (43%), Positives = 304/486 (62%), Gaps = 28/486 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
           L Q   + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R  
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                   ++  N+   F+  F      FP+GE+ A++ L+ FC  K   Y  +RD P +
Sbjct: 181 DRDIFLTSISLKNVNLNFNKSF------FPVGEKEAINRLKNFCIYKFNDYFLKRDYPFL 234

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-------AFSWLNELIWREFYR 292
             TS LSPYLS G++S R C        + +L+K K+          SW ++++WREFY 
Sbjct: 235 DATSMLSPYLSAGIISSRYC--------LKVLLKTKNSLPLNVLLTSSWFDQILWREFYY 286

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HL+  +P +   +  + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNR
Sbjct: 287 HLLIGFPKISRSESLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNR 346

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMIT+SFLVK+LL++WR GEEYF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP 
Sbjct: 347 LRMITSSFLVKNLLINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPL 406

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            Q K FD  G FI+ ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+
Sbjct: 407 HQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLS 466

Query: 473 QYYAAK 478
            +  A+
Sbjct: 467 LFKQAR 472


>gi|261251524|ref|ZP_05944098.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891]
 gi|260938397|gb|EEX94385.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891]
          Length = 475

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/480 (46%), Positives = 294/480 (61%), Gaps = 19/480 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VWLR DLR+ DN AL  A   S   V AV+IATP+ W++H ++  Q+  I+  LL +
Sbjct: 1   MKIVWLRRDLRVDDNTALVEAVM-SGGSVAAVYIATPKTWQRHNMAPIQADLIFRRLLVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRL 127
           ++ LS K I   Y +   + D+ + L     Q     +++N QYE++E++RD+ L+ + L
Sbjct: 60  KQELSAKNIPLYYAEVPTYRDAAQLLADVAQQSDAGSVYFNHQYEVDEIQRDRHLVNQLL 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              + C  FDD  +L PGS++N   + YKV+TPF++A  Q L Q  +    V  +     
Sbjct: 120 DTNIECVGFDDKCVLSPGSVVNKQREYYKVFTPFKRAYCQRLYQTPISVKRVIEVGSVAE 179

Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           ++   +  F     F YP    +  F +  +N +  LR F  EKV  Y  QRD P ++GT
Sbjct: 180 LSSEKVTHFHPKVEFSYPRVTSERYF-VDTKNIIQKLRDFESEKVDAYALQRDFPEMEGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP---KSGAFSWLNELIWREFYRHLMAFYP 299
           SQLSPYL+IG LS RQC  RL      L   P     G   WL+EL+WREFY+HL+ F P
Sbjct: 239 SQLSPYLAIGALSVRQCLIRL------LCNNPPPIAGGREVWLSELVWREFYQHLIYFEP 292

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +  G  F  W + + W  +   ++AWK G TG+PI+DAAM QLN  GWMHNRLRMI AS
Sbjct: 293 KLSKGHSFTSWGDNLVWRNNPAEIEAWKLGRTGYPIVDAAMAQLNRTGWMHNRLRMIVAS 352

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVKDL VDWRIGEEYFMS+L+DGD A+NNGGWQW ASTG D  PYFR+FNPT QG++FD
Sbjct: 353 FLVKDLHVDWRIGEEYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRVFNPTTQGEKFD 412

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            + +FIR WLPEL  VP +YIH P  W   N  SL+YP PIVDHK     TL  Y  AK+
Sbjct: 413 SEASFIRSWLPELEEVPDRYIHKPWCW--PNAKSLSYPTPIVDHKAEREITLALYKDAKE 470


>gi|330830812|ref|YP_004393764.1| deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
 gi|328805948|gb|AEB51147.1| Deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
          Length = 473

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/478 (45%), Positives = 298/478 (62%), Gaps = 12/478 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW RNDLR+ DN AL  AC   D  V A+FI +P QWRQH ++  +  F+ A + ++
Sbjct: 1   MKLVWFRNDLRLADNPALRHAC-AGDEPVAALFIISPTQWRQHKMAPIRQRFMLAQVDEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L+  GI     +   F +    L + C +Q VT+L+ N+  EI+E+RRD  +   L 
Sbjct: 60  GRELAALGIQLHLLRVETFAEVPAVLANLCREQGVTQLYANQAIEIDELRRDHAVSAALA 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186
            + + C  F+   +LPPG +L  + +M+KV+TPF +A +++L +        P  R    
Sbjct: 120 EQAVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKSLDEEGFVIHRAPTPRGEPL 179

Query: 187 PVTPSNIPRFFDYPFQ--AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           P  P     + D       +DP +P+GE  AL  L  F ++ V  Y E RD PAI GTS 
Sbjct: 180 PWQPLAERAWVDEALGELTVDPRWPVGEAEALRRLNIFLEQAVLDYGETRDFPAIAGTSV 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV 301
           LSPYL+ G++SPRQC   L++    L  +P+S A   F WLNELIWREFYRHL+   P++
Sbjct: 240 LSPYLAAGIISPRQCVAVLQQR---LGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPAL 296

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            M +PF P T  + W+ D     AW +G TG+PI+DAAMR LNT GWMHNRLRMI ASFL
Sbjct: 297 SMNRPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNTTGWMHNRLRMIVASFL 356

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL + WR+GE+YFMS+L+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQ
Sbjct: 357 TKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQ 416

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           G FIR W+ EL ++P  Y+H PH WL       +YP+P+VDH  A    +  + + +K
Sbjct: 417 GEFIRTWVTELADIPPAYVHQPHDWLRLKGRQ-DYPVPMVDHAVARVRAIEMFRSLEK 473


>gi|254505847|ref|ZP_05117992.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16]
 gi|219551070|gb|EED28050.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16]
          Length = 465

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/466 (46%), Positives = 296/466 (63%), Gaps = 12/466 (2%)

Query: 18  LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77
           +R  DN AL AA  + +  VIA F+ATP+ WR+H ++  Q+  I   L++++  LS+  I
Sbjct: 1   MRTIDNTALNAAIESGEP-VIAAFVATPDSWREHKMAPIQADLIKRRLVELKSELSELNI 59

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSF 136
              Y +  ++  S++ + S+  Q  VT +  N++YE+NEV RD   E +L    V    +
Sbjct: 60  PLIYSEAPDYSSSVDVVLSWVKQYGVTNVHVNKEYELNEVSRDDKAESKLSELGVPLHRY 119

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRLTGPVTPSNIPR 195
           DD     PGS++N     +KV+TP+++A +Q L Q  ++   V  A+ L   + P +I +
Sbjct: 120 DDKCHFAPGSVVNKQGHYFKVFTPYKRAYLQKLEQYPVQVQKVKGAVELGRELRPQDILQ 179

Query: 196 F---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG 252
               F YP +  D ++P+     L +LR F  E+   Y   RD P+I+GTS+LS YL+IG
Sbjct: 180 HDMTFSYPTECSD-VYPVKTTQILELLRAFVNERSDDYQADRDFPSIEGTSRLSLYLAIG 238

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312
            LS RQC  RL     + ++    G  +WL+ELIWREFY+HL+ F P +  G+ F+PW  
Sbjct: 239 ALSVRQCMARL---LYEQILPLSEGRQTWLSELIWREFYQHLIYFEPKLSRGESFLPWGR 295

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            + W  D   +QAWK+G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL+KDL VDWRIG
Sbjct: 296 HLTWQNDEKRIQAWKEGMTGYPIVDAAMRQLNQTGWMHNRLRMIAASFLIKDLQVDWRIG 355

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           E+YFMS+L+DG+ ++NNGGWQW ASTG D  PYFRIFNPT QG+RFDP+G F+RHW+PEL
Sbjct: 356 EDYFMSKLIDGEYSANNGGWQWCASTGCDGQPYFRIFNPTTQGERFDPKGDFVRHWVPEL 415

Query: 433 NNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            NVP +YIH P  W +   +S  YP PIVDHK     TL  Y  AK
Sbjct: 416 KNVPDKYIHQPSKWANAKGVS--YPSPIVDHKAQREITLANYKNAK 459


>gi|311087193|gb|ADP67273.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/486 (43%), Positives = 303/486 (62%), Gaps = 28/486 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
           L Q   + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R  
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                   ++  N+   F+  F      FP+GE+ A++ L+ FC  K   Y  +RD P +
Sbjct: 181 DRDIFLTSISLKNVNLNFNKSF------FPVGEKEAINRLKNFCIYKFNDYFLKRDYPFL 234

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-------AFSWLNELIWREFYR 292
             TS LSPYLS G++S R C        + +L+K K+           W ++++WREFY 
Sbjct: 235 DATSMLSPYLSAGIISSRYC--------LKVLLKTKNSLPLNVLLTSPWFDQILWREFYY 286

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HL+  +P +   +  + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNR
Sbjct: 287 HLLIGFPKISRSESLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNR 346

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMIT+SFLVK+LL++WR GEEYF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP 
Sbjct: 347 LRMITSSFLVKNLLINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPL 406

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            Q K FD  G FI+ ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+
Sbjct: 407 HQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLS 466

Query: 473 QYYAAK 478
            +  A+
Sbjct: 467 LFKQAR 472


>gi|323228026|gb|EGA12170.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
          Length = 387

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/391 (52%), Positives = 275/391 (70%), Gaps = 6/391 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F  SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMIWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 297 QPFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           LL+DWR+GE YFMSQL+DGDLA+NNGGWQWA
Sbjct: 357 LLIDWRLGERYFMSQLIDGDLAANNGGWQWA 387


>gi|311087720|gb|ADP67799.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/486 (43%), Positives = 303/486 (62%), Gaps = 28/486 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
           L Q   + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R  
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                   ++  N+   F+  F      FP+GE+ A++ L+ FC  K   Y  +RD P +
Sbjct: 181 DRDIFLTSISLKNVNLNFNKSF------FPVGEKEAINRLKNFCIYKFNDYFLKRDYPFL 234

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-------AFSWLNELIWREFYR 292
             TS LSPYLS G++S R C        + +L+K K+           W ++++WREFY 
Sbjct: 235 DATSMLSPYLSAGIISSRYC--------LKVLLKTKNSLPLNVLLTSPWFDQILWREFYY 286

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HL+  +P +   +  + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNR
Sbjct: 287 HLLIGFPKISRSESLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNR 346

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMIT+SFLVK+LL++WR GE+YF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP 
Sbjct: 347 LRMITSSFLVKNLLINWREGEKYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPL 406

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            Q K FD  G FI+ ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+
Sbjct: 407 HQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLS 466

Query: 473 QYYAAK 478
            +  A+
Sbjct: 467 LFKQAR 472


>gi|15616910|ref|NP_240123.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11133758|sp|P57386|PHR_BUCAI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|25291445|pir||A84965 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [imported] -
           Buchnera sp. (strain APS)
 gi|10038974|dbj|BAB13009.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/486 (43%), Positives = 303/486 (62%), Gaps = 28/486 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVYDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
           L Q   + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R  
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                   ++  N+   F+  F      FP+GE+ A++ L+ FC  K   Y  +RD P +
Sbjct: 181 DRDIFLTSISLKNVNLNFNKNF------FPVGEKEAINRLKNFCIYKFNDYFLKRDYPFL 234

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-------AFSWLNELIWREFYR 292
             TS LSPYLS G++S R C        + +L+K K+           W ++++WREFY 
Sbjct: 235 DATSMLSPYLSAGIISSRYC--------LKVLLKTKNSLPLNVLLTSPWFDQILWREFYY 286

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HL+  +P +   +  + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNR
Sbjct: 287 HLLIGFPKISRSESLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNR 346

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMIT+SFLVK+LL++WR GEE+F+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP 
Sbjct: 347 LRMITSSFLVKNLLINWREGEEHFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPL 406

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            Q K FD  G FI+ ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+
Sbjct: 407 HQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLS 466

Query: 473 QYYAAK 478
            +  A+
Sbjct: 467 LFKQAR 472


>gi|219681664|ref|YP_002468050.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471353|ref|ZP_05635352.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624507|gb|ACL30662.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/486 (43%), Positives = 302/486 (62%), Gaps = 28/486 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
           L Q   + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R  
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                   ++  N+   F+  F      FP+GE+ A++ L+ FC  K   Y  +RD P +
Sbjct: 181 DRDIFLTSISLKNVNLNFNKNF------FPVGEKEAINRLKNFCIYKFNDYFLKRDYPFL 234

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-------AFSWLNELIWREFYR 292
             TS LSPYLS G++S R C        + +L+K K+           W ++++WREFY 
Sbjct: 235 DATSMLSPYLSAGIISSRYC--------LKVLLKTKNSLPLNVLLTSPWFDQILWREFYY 286

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HL+  +P +   +  + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNR
Sbjct: 287 HLLIGFPKIGRSESLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNR 346

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMIT+SFLVK+LL++WR GEEYF+S L+DGDLA NNGGWQW+AS G DS PY RIFNP 
Sbjct: 347 LRMITSSFLVKNLLINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSAPYIRIFNPL 406

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            Q K FD  G FI+ ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+
Sbjct: 407 HQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLS 466

Query: 473 QYYAAK 478
            +  A+
Sbjct: 467 LFKQAR 472


>gi|323496501|ref|ZP_08101559.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
 gi|323318778|gb|EGA71731.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
          Length = 474

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/475 (46%), Positives = 294/475 (61%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN A  AA  NS+  V+A FIATP+ W QH ++  Q+  I   L ++
Sbjct: 1   MRLVWFRRDLRTIDNTAFIAAI-NSNEPVVAAFIATPDSWSQHHMAPMQADLIKRRLFEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L+  G+   Y + S++  S++ + ++  Q  VT +  N++YEINEVRRD   E+ L 
Sbjct: 60  QNDLASLGVPLIYAETSDYASSVDVVCNWVKQYSVTSVHLNKEYEINEVRRDDKAEQALT 119

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-LTG 186
              V+    DD     PGS++N     +KV+TP+++A +Q L Q  ++   V A+     
Sbjct: 120 RLDVVLHRHDDKCQFIPGSVVNKQGHYFKVFTPYKRAYLQKLEQFPVQVQKVTAVNGQKA 179

Query: 187 PVTPSNI---PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            V   ++      F YP +     + +  +  L  LR F KE    Y ++RD PAI+GTS
Sbjct: 180 KVDECDLFSKDCSFRYPTEE-SQAYQVSTEQILDQLRSFVKEHSDDYQDERDFPAIEGTS 238

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL+IG LS RQC  RL  +    L     G  +WL+ELIWREFY+HL+ F P +  
Sbjct: 239 RLSPYLAIGALSVRQCMARLLYQQTAPL---SEGRQTWLSELIWREFYQHLLYFEPKLSR 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G+ F+PW   + W      ++AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVK
Sbjct: 296 GESFLPWGVHLRWENCPRRIKAWQQGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL VDWR+GE+YFMS+L+DG+ A+NNGGWQW ASTG D  PYFRIFNPT QG+RFDP+G 
Sbjct: 356 DLQVDWRVGEDYFMSKLVDGEYAANNGGWQWCASTGCDGQPYFRIFNPTTQGERFDPKGE 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           F+R W+PEL ++P + IH P  WL     S  YP PIVDHK     TL  Y  AK
Sbjct: 416 FVRRWVPELADLPDKQIHQPSKWLSVKGSS--YPAPIVDHKVQREITLANYKNAK 468


>gi|117618175|ref|YP_855643.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559582|gb|ABK36530.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 473

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/478 (45%), Positives = 292/478 (61%), Gaps = 12/478 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+W RNDLR+ DN AL  AC   D  V A+FI +P QWRQH ++  +  F+ A +  +
Sbjct: 1   MKLIWFRNDLRLADNPALRHAC-AGDEPVAALFILSPSQWRQHKLAPIRQRFLLAQVDVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L+  GI     +   F +    L   C +  VT+L+ N+  EI+E+RRD+ +   L 
Sbjct: 60  GRELAALGIPLHLLRVETFSEVPAALAELCRELGVTQLYANQAIEIDELRRDQAVSAALA 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186
            + + C   +   +LPPG +L  + +M+KV+TPF +A ++ L +        PA R    
Sbjct: 120 EQTVGCHWLNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALDEDGFVIHRPPAPRGEPL 179

Query: 187 PVTPSNIPRFFDYPFQAI--DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           P  P     F D     +  DP +P+GE  A   L  F ++ V  Y E RD PAI GTS 
Sbjct: 180 PWQPLAERHFVDAALGELTADPRWPVGEAEASRRLNDFLEQAVLDYGETRDFPAIAGTSV 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV 301
           LSPYL+ G++SPRQC   L++    L  +P+S A   F WLNELIWREFYRHL+   P++
Sbjct: 240 LSPYLAAGIISPRQCVAALQQR---LGYRPQSKAQPGFVWLNELIWREFYRHLLVQIPTL 296

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            M +PF P T  + W+ D     AW +G TG+PI+DAAMR LN  GWMHNRLRMI ASFL
Sbjct: 297 SMNRPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFL 356

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL + WR+GE+YFMS+L+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQ
Sbjct: 357 TKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQ 416

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           G FIR W+ EL ++P  Y+H PH WL       +YP P+VDH  A    +  + A +K
Sbjct: 417 GEFIRTWVSELADLPAAYLHQPHDWLRLKGRH-DYPAPMVDHAVARVRAIEMFRALEK 473


>gi|237807886|ref|YP_002892326.1| Deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187]
 gi|237500147|gb|ACQ92740.1| Deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187]
          Length = 465

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/457 (46%), Positives = 290/457 (63%), Gaps = 6/457 (1%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R+DLR+ D+ ALYAA  + +  + A++  TPEQW++  ++  ++  I   L Q+ +
Sbjct: 4   LVWFRDDLRVHDHPALYAASLHPE-PLQAIYFVTPEQWKKQDLAPVRADLIARQLNQLGE 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+  GI F     +++      L SYC Q  V++LF NR   I E+ RD  ++++    
Sbjct: 63  ALAALGIPFSVLTVADYQQIPARLASYCQQHEVSQLFVNRDIGIYELARDLSVQQQCDAT 122

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  + FD   +  PGS+L  + +M+KV+TPF KA ++ L     +  P P+ R  G ++
Sbjct: 123 GIRVQWFDARCVFAPGSVLTGSKEMFKVFTPFSKAWLKKLAAEGYQVWPKPSAR-GGILS 181

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
            S++    DYP +     +P+GE   L  L+ FC EK+  Y EQRD PA  GTS++SPYL
Sbjct: 182 WSSVS--IDYP-RVDSSDWPVGEAAVLQQLQDFCAEKLRQYDEQRDFPACPGTSRISPYL 238

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           ++G++S RQC   ++     L  +  +  F WLNELIWREFY+HL+  +P V   K F P
Sbjct: 239 TLGIISVRQCLAAIEAALGQLPFERGAPGFVWLNELIWREFYQHLLVAFPHVSKHKAFKP 298

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
            T+ I W  D     AW +G TG+PI+DAAMR LN  GWMHNRLRMI ASFL KDL +DW
Sbjct: 299 ETDHIRWLWDDARFTAWCEGKTGYPIVDAAMRCLNQTGWMHNRLRMIVASFLTKDLHIDW 358

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R+GE YFM  L+DG+LA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD QG FI+ WL
Sbjct: 359 RLGERYFMQHLIDGELAANNGGWQWAASTGADAAPYFRIFNPTTQGQRFDEQGQFIKQWL 418

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           PEL  VP +YIH PH WL   D   +YP PIVDH ++
Sbjct: 419 PELELVPAKYIHTPHDWLKVFDPQDSYPAPIVDHSES 455


>gi|260769655|ref|ZP_05878588.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
 gi|260614993|gb|EEX40179.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
          Length = 475

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/482 (45%), Positives = 286/482 (59%), Gaps = 26/482 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL  A   SD  V A+F+ATP QW+QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWLRRDLRSVDNTALNEAL-ASDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           Q  L+   +   Y + + F ++++ +          ++  NR YE+NE +RD    +RL 
Sbjct: 60  QTELAALNVPLLYREVATFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLH 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q  +  +SFDD  ++PPGS+ N     +KV+TPF++A         L     P I+ +  
Sbjct: 120 QQGIEWQSFDDKCVMPPGSLRNKQGDYFKVFTPFKRAW--------LTQFSPPRIQASRA 171

Query: 188 VTPSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             P ++P             F +P  + D  +P+        LR FC+E++  Y +QRD 
Sbjct: 172 AKPWSLPEALQSLLWCEAQPFTHPRVSSD-AWPVDFDTIRRRLRAFCQEQLDDYKQQRDF 230

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA  GTS LSPYL+IG LSPRQC  R+  E    +     GA +WL+ELIWREFY+HL+ 
Sbjct: 231 PAQDGTSSLSPYLAIGALSPRQCIARVYAE--SAMGALSDGAQTWLSELIWREFYQHLLT 288

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           F P +   K F+ W  ++ W  D      W +G TG+PI+DAAMRQLN  GWMHNRLRMI
Sbjct: 289 FEPKLSKSKDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMI 348

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL +DWR GE YFM  L+DGD A+NNGGWQW ASTG D  PYFRIFNPT QG+
Sbjct: 349 VASFLTKDLHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGE 408

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FDPQG FIR W+PEL  VP  +IHAP +W   N  SL YP PIVDHK     TL  Y  
Sbjct: 409 KFDPQGRFIRQWVPELATVPEAHIHAPSNWGGVN--SLLYPQPIVDHKAEREVTLRLYKE 466

Query: 477 AK 478
           AK
Sbjct: 467 AK 468


>gi|315182348|gb|ADT89261.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio furnissii NCTC 11218]
          Length = 475

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/482 (45%), Positives = 285/482 (59%), Gaps = 26/482 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL  A   SD  V A+F+ATP QW+QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWLRRDLRSVDNTALNEAL-ASDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           Q  L+   +   Y +   F ++++ +          ++  NR YE+NE +RD    +RL 
Sbjct: 60  QTELAALNVPLLYREVVTFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLH 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q  +  +SFDD  ++PPGS+ N     +KV+TPF++A         L     P I+ +  
Sbjct: 120 QQGIEWQSFDDKCVMPPGSVRNKQGDYFKVFTPFKRAW--------LTQFSPPRIQASRA 171

Query: 188 VTPSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             P ++P             F +P  + D  +P+        LR FC+E++  Y +QRD 
Sbjct: 172 AKPWSLPEALQSLLWCESQPFTHPRVSSD-AWPVDFDTIRGRLRAFCQEQLDDYKQQRDF 230

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA  GTS LSPYL+IG LSPRQC  R+  E    +     GA +WL+ELIWREFY+HL+ 
Sbjct: 231 PAQDGTSSLSPYLAIGALSPRQCIARVYAE--SAMGALSDGAQTWLSELIWREFYQHLLT 288

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           F P +   K F+ W  ++ W  D      W +G TG+PI+DAAMRQLN  GWMHNRLRMI
Sbjct: 289 FEPKLSKSKDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMI 348

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL +DWR GE YFM  L+DGD A+NNGGWQW ASTG D  PYFRIFNPT QG+
Sbjct: 349 VASFLTKDLHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGE 408

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FDPQG FIR W+PEL  VP  +IHAP +W   N  SL YP PIVDHK     TL  Y  
Sbjct: 409 KFDPQGRFIRQWVPELATVPEAHIHAPSNWGGVN--SLLYPQPIVDHKAEREVTLRLYKE 466

Query: 477 AK 478
           AK
Sbjct: 467 AK 468


>gi|312883049|ref|ZP_07742780.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369209|gb|EFP96730.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 476

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/479 (43%), Positives = 286/479 (59%), Gaps = 12/479 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW R DLR+ DN AL  AC + +  V+ V+ ATP+ W +H +SA Q+  IY  L  +
Sbjct: 1   MNVVWFRRDLRVEDNTALIEACQSGEP-VVGVYFATPKTWERHSLSAIQADLIYRRLFAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L +  I   Y +  ++ D +E +         + LF+N+QYE +EV+RD  + + L+
Sbjct: 60  QDDLRKLNIPLYYAEVDSYKDCVELIADVMTSSSASGLFFNKQYEFDEVQRDSAIVQLLK 119

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V C + +D   LPPGS+LN     +KV+TPF++A +Q +    L  +       T P
Sbjct: 120 ESNVDCSAHEDKCFLPPGSVLNKQGGYFKVFTPFKRAYLQQMEVTPLNVIKAKKQSNTLP 179

Query: 188 VTPSNIPRFF--DYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              +   R F  D PF   +     + +     +  LR+F ++KV  Y E RD P++  T
Sbjct: 180 TLDNTRLRLFSQDSPFSYPRVSSNNYKVETTEVIQALREFEEKKVKLYAENRDYPSVDAT 239

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL++G+LS RQC  R+        +    G   W +ELIWREFY+HL  F P + 
Sbjct: 240 SILSPYLAVGILSIRQCMARV---MYQQQLPLSGGREVWQSELIWREFYQHLAYFEPKLS 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G+ F PW E + W      L+AWK G TG+PI+DAAM+QLN  GWMHNRLRMI ASFL+
Sbjct: 297 KGESFNPWGEHLRWENSQVFLEAWKSGKTGYPIVDAAMKQLNETGWMHNRLRMIVASFLI 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL +DWR+GE+YFMS+L+DGD  +NNGGWQW +STG D  PYFRIFNP  QG+RFDP G
Sbjct: 357 KDLHIDWRVGEQYFMSKLVDGDYPANNGGWQWCSSTGCDGQPYFRIFNPITQGERFDPDG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            FI  WLP+L  VP +++H P  W   +   L YP PIVDHK     TL+ Y  AK+ S
Sbjct: 417 RFIIRWLPQLAEVPKKFLHQPWKWSRAS--QLKYPAPIVDHKVQRGITLDLYKQAKEYS 473


>gi|260776993|ref|ZP_05885887.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606659|gb|EEX32933.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 471

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/482 (45%), Positives = 281/482 (58%), Gaps = 25/482 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWLR DLRI DN AL  A    +  V+ ++ ATPE W +HG++  Q+  IY  L  +
Sbjct: 1   MNLVWLRRDLRIEDNSALVNAVETGEP-VVCIYTATPETWHEHGLAPIQADLIYRRLQGL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L    I   Y +   + +S + +          ++  N++YE+NE RRD  LE  L 
Sbjct: 60  KQDLESLRIPLLYEEVDTYTESAKRVAEIATLLSANRVLVNKEYEVNEQRRDATLEMCLN 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I  KS DD  +  PGSI+N     +KV+TPF+KA +  L +   +      +R    
Sbjct: 120 DTAIQVKSSDDKCIFAPGSIVNKQGSYFKVFTPFKKAYLAELGECSFQ------VRKPQV 173

Query: 188 VTPSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              S +P             F YP +  D  F    Q+ +  LR F  + V  Y   RD 
Sbjct: 174 ACSSRLPEHLSSLLFADDVTFSYPREPSD-QFAADTQSIIQTLRDFDSQDVEGYASNRDF 232

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PAI GTSQLSPYL+IG LS RQC  RL       L     G   W +ELIWREFY+HL+ 
Sbjct: 233 PAIAGTSQLSPYLAIGALSVRQCMARLMFGQAPPL---SQGREVWQSELIWREFYQHLIY 289

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           F   +  G+ F+ W +++ W  +   ++AWKQG TGFPI+DAAM+QLN  GWMHNRLRMI
Sbjct: 290 FEAKLSKGRSFVDWGDRLVWKNEPQYIEAWKQGETGFPIVDAAMKQLNQTGWMHNRLRMI 349

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFLVKDL VDWR+GE YF+++L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG+
Sbjct: 350 VASFLVKDLHVDWRVGERYFINKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGE 409

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           RFDPQG F+R WLPEL  VP +Y+H P  W      SL+YP PIVDHK     TL  Y  
Sbjct: 410 RFDPQGEFVRQWLPELAQVPDKYLHQPWKW--SGVRSLSYPPPIVDHKVEREVTLRLYKE 467

Query: 477 AK 478
           AK
Sbjct: 468 AK 469


>gi|261213071|ref|ZP_05927355.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
 gi|260838136|gb|EEX64813.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
          Length = 469

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/479 (46%), Positives = 298/479 (62%), Gaps = 20/479 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA  + +  V+AV+IATP QW+QH ++  Q+ FI+  L ++
Sbjct: 1   MKLVWFRRDLRSFDNTALSAAIASGE-PVVAVYIATPAQWQQHHVAPIQADFIWRRLGEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  + E +     +   T++F NR YE++E +RD+  E  L 
Sbjct: 60  QQELAALNVPLLYQQVADFKAAAEAVSQLASKLNATQVFANRDYELDEQQRDRHTELLLD 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R I   +FDD  LLPPG +     + +KV+TPF++A + +L Q  + +   PA     P
Sbjct: 120 ERGISWATFDDKCLLPPGCVRTKQGEHFKVFTPFKRAWL-SLFQPPIITKNQPA----EP 174

Query: 188 VTPS--------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            T S        N  + FDYP +     +P+  +   + LR FC+++V  Y +QRD PA 
Sbjct: 175 WTLSSEWASWVWNSAQTFDYP-RVDSQSWPVDFETIRNQLRDFCRDQVQNYHQQRDFPAR 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GTS LSPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A  P
Sbjct: 234 EGTSVLSPYLAIGALSARQCVARLYRE--SSMGALSEGAQVWLSELIWREFYQHLVAIEP 291

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           ++   + F  W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI AS
Sbjct: 292 NISKSRDFHEWGSRLEWWDDNEKFQRWCEGTTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FD
Sbjct: 352 FLTKDLHIDWRWGERYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           PQG FIRHW+PEL ++   YIH P ++   N  S+ YP  +VDHK+    TL  Y  AK
Sbjct: 412 PQGEFIRHWVPELRSMSAAYIHQPWTYPAVN--SVPYPARLVDHKQEREVTLRLYKTAK 468


>gi|238757988|ref|ZP_04619169.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236]
 gi|238703742|gb|EEP96278.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236]
          Length = 362

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/361 (55%), Positives = 250/361 (69%), Gaps = 6/361 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLRITDN AL AAC +  A+VIA+FIATP+QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRITDNLALNAACQDPQARVIALFIATPKQWAAHDMAPRQAAFLQQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ K I   YHQC +F D++ WLD++C QQ+V  LFYN+QYE+NE RRD+ L  R
Sbjct: 61  LLQSALAAKSIALHYHQCDDFQDAVIWLDNFCQQQQVDALFYNQQYELNERRRDEALAVR 120

Query: 127 LQ-----HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L        + C  F DS+LLPPGS+L    +MYKV+TPFR+A IQ L+ +D   +P P 
Sbjct: 121 LNSGANGRNITCHRFHDSLLLPPGSVLTGNNEMYKVFTPFRRAFIQRLLMSDNACVPAPI 180

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            R       S  P  FDYP Q +DP +FP GE  AL  LR FC+E+V  Y +QRD PA+ 
Sbjct: 181 ARDNMAAATSFPPLLFDYPQQPVDPILFPAGEDAALQRLRSFCREQVQDYHQQRDFPAVS 240

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LSPYL++GVLSPRQC+NRL+ E    L  P SGAF+WLNELIWREFY HL+  YP 
Sbjct: 241 GTSCLSPYLALGVLSPRQCFNRLRAECPAGLENPDSGAFTWLNELIWREFYCHLLVAYPR 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +C   PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASF
Sbjct: 301 LCQHHPFIGWTDAVIWNHSELQLTAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASF 360

Query: 361 L 361
            
Sbjct: 361 F 361


>gi|260774030|ref|ZP_05882945.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14]
 gi|260610991|gb|EEX36195.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14]
          Length = 475

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/477 (45%), Positives = 291/477 (61%), Gaps = 16/477 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL  A  + ++ V A+F+ATP QW++H ++  Q+ FIY  L  +
Sbjct: 1   MKLVWLRRDLRAIDNTALQQAIASGES-VSALFVATPHQWQRHDLAPIQADFIYRRLFTL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   I   Y Q  ++  + + +  +     V ++  NR YE NE +RD   E+ L 
Sbjct: 60  QQELAALNIPLFYKQVDDYQQASQVVSEFAQSLSVNQVLVNRDYEWNEQQRDSQTEQALS 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   + DD  LL PG +LN   + +KV+TPF++A +       + S P  A+    P
Sbjct: 120 TLGIDWLACDDKCLLTPGQVLNKQGEYFKVFTPFKRAWLSRFTPPVIVSTPTAAV---NP 176

Query: 188 VTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +  S      N  + F YP  + D  +P+  +   H LR+FC++ +  Y +QRD PA +G
Sbjct: 177 LLDSEHNALWNERQDFAYPRVSSD-QWPVDFETVRHQLRQFCQQSIDDYHQQRDFPAQEG 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSPYL+IG+LS RQC  R+  +    L+   SGA  WL+ELIWREFY+HL+ F   +
Sbjct: 236 TSRLSPYLAIGMLSVRQCIARMYAQSQSGLLS--SGAEIWLSELIWREFYQHLLVFESKL 293

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             GK F  W ++++W+ D      W +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL
Sbjct: 294 SKGKAFHSWGDQLQWSDDKQAFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMVVASFL 353

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL +DW  GE YFM QL+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG+RFDP 
Sbjct: 354 TKDLHIDWHWGERYFMQQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGERFDPS 413

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           G FIR W+PEL +VPT YIH P  W      SL YP P+VDHK A   TL  Y  AK
Sbjct: 414 GQFIRQWVPELASVPTAYIHTPWKWPGVK--SLLYPSPMVDHKVAREVTLRLYKEAK 468


>gi|48951|emb|CAA43069.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
          Length = 450

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 244/476 (51%), Positives = 324/476 (68%), Gaps = 27/476 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN    AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDN-LAAAACRDASARVLALYISTP-QWQAHDMAPRQAAFISAQL- 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ + F+ SIE + + C Q  V+  FYN QYE NE +RD+ +EK 
Sbjct: 58  ALQTALAEKGIPLLFHEVA-FNASIETVKNVCRQHDVSH-FYNYQYEFNERQRDRAVEKL 115

Query: 127 LQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
               VIC+ FDDSV+L PG++  NH  +MYKV+TPF+ A ++ L +     +P P IR++
Sbjct: 116 PS--VICEGFDDSVILAPGAMTGNH--EMYKVFTPFKNAWLR-LKEDIPPCVPAPKIRVS 170

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           G  TP   P   +YP Q  D +FP+ E   +  LR+FC +   Y + +RD PA+ GTS+L
Sbjct: 171 GLSTPLT-PVSLNYPQQEFDALFPVEENAVIAQLRQFCAQADEYAL-RRDFPAVDGTSRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           +  L+ G LSPRQC +RL  +   L   P S    WLNELIW EFYRHLM +YP++C  +
Sbjct: 229 AS-LATGGLSPRQCLHRLLAQPQALDGGPGS---VWLNELIW-EFYRHLMTWYPALCKHQ 283

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF  WT+++ W ++ H  QAW QG TG+PI+DAAMRQLN  G MHNRLRMITASFLVKDL
Sbjct: 284 PFR-WTKRVAWQENPHYFQAW-QGETGYPIVDAAMRQLNATG-MHNRLRMITASFLVKDL 340

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ WR+GE YFMSQL+DGDLA+ NGGWQWAASTG D+ PYFR FNPT QG+RFD  G FI
Sbjct: 341 LI-WRLGERYFMSQLIDGDLAA-NGGWQWAASTGTDAAPYFR-FNPTTQGERFDRDGEFI 397

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R  LP L ++P + IH P  W  K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 398 RQ-LPALRDIPGKAIHEPWRWA-KAGVVLDYPRPIVEHKQA-RATLSAYEAARKGA 450


>gi|262403201|ref|ZP_06079761.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
 gi|262350700|gb|EEY99833.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
          Length = 469

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/475 (46%), Positives = 297/475 (62%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL AA  + D  V+AV++ATP+QW+QH ++  Q+ FI+  L  +
Sbjct: 1   MRLVWLRRDLRCVDNSALSAAIASGDP-VVAVYLATPKQWQQHHLAPIQADFIWRRLGAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           Q+ L++  +   Y Q ++F D+ E +       +  ++F NR YE++E +RD   E+RL 
Sbjct: 60  QQELAKLNVPLLYRQVADFHDAAEVICQLAKTLKAKQVFANRDYELDEQQRDLRTEQRLA 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + ++   +FDD  +LPPGS+     + +KV+TPF++A + +L Q        PA++   P
Sbjct: 120 EQQIAWWAFDDKCILPPGSVRTQQGEFFKVFTPFKRAWL-SLFQPPTIVKNSPALKGIIP 178

Query: 188 VTPS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              +    N  + FDY  +     +P+  +   + LR FC+E+V  Y + RD PA  GTS
Sbjct: 179 SELTDWIWNSEQAFDYE-RVDSSQWPVEFETIRNQLRDFCRERVQDYHQWRDFPARTGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IG LS RQC  RL  E    ++    GA  WL+ELIWREFY+HL+A  P++  
Sbjct: 238 SLSPYLAIGALSARQCVARLYRESAMGVLG--EGAQVWLSELIWREFYQHLVAREPNLSK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F  W   +EW  D    Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 SRDFHEWGSHLEWWNDHEKFQRWCEGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMSQL+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHIDWRWGERYFMSQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL  + + YIH P ++   N  S+ YP P+VDHK+    TL  Y  AK
Sbjct: 416 FIRRWVPELRGLSSAYIHQPWTYPAVN--SVLYPAPLVDHKQEREVTLRLYKTAK 468


>gi|323494304|ref|ZP_08099416.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
 gi|323311467|gb|EGA64619.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
          Length = 475

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/476 (44%), Positives = 290/476 (60%), Gaps = 13/476 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLRI DN+AL +A   S+  V+A++IATPE W++HG++  Q+  I   L+ +
Sbjct: 1   MKLVWLRRDLRIEDNRALCSAI-ESEQPVMALYIATPETWQRHGLAPIQADLIKRRLVTL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L+   +   Y Q   +  + + +        +  +++N++YE +E  RD  L++ L 
Sbjct: 60  QTDLATINVPLYYAQVDTYQQAAQLVAEIAKSNSLDGVYFNKEYEFDEQNRDARLQELLV 119

Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           H  I   SFDD   L PGS+LN     +KV+TPF++A +    Q  +  +    I     
Sbjct: 120 HAGIAAHSFDDKCALQPGSVLNKQGHYFKVFTPFKRAYLTRFYQQPISVIRPQPIGEVAQ 179

Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +       F     FDYP ++    +P+   + ++ LR F   +   Y + RDIP+I+GT
Sbjct: 180 LHGEQAQLFSDNSSFDYPTES-SATYPVDTSSIINQLRDFVAHRSERYSDLRDIPSIEGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL+IG LS RQC  RL ++    L     G   W++ELIWREFY+HL+ F   + 
Sbjct: 239 SRLSPYLAIGALSVRQCMARLHDQHPKPL---PPGREMWMSELIWREFYQHLIYFESKLS 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            GK F+ W +++ W   S  + AWK+G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL+
Sbjct: 296 KGKCFLEWGDRLSWRNSSADIDAWKKGQTGYPIVDAAMRQLNHTGWMHNRLRMVVASFLI 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL VDW +GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG+RFDP G
Sbjct: 356 KDLHVDWHVGERYFMSKLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGERFDPDG 415

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            F+  W+PEL  VP ++IH P  W    +LS  YP PIVDHK     TL+ Y  AK
Sbjct: 416 EFVCQWIPELAAVPRKFIHQPWKWCKAKELS--YPPPIVDHKTEREITLSLYKEAK 469


>gi|269962802|ref|ZP_06177143.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832492|gb|EEZ86610.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 471

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/478 (44%), Positives = 294/478 (61%), Gaps = 18/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  +S   V+A F+ATPEQW++H ++  Q+  I   L  +++
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DSGQPVVAGFVATPEQWQEHHMAPMQADLIARRLTHLEE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L++  +   Y +   F D  E +  + L   V  +  N  YE+NE   D+ + + L + 
Sbjct: 62  ELTELNVPLLYKEVPKFSDVTEVIKGWALSLNVESVMANIHYEVNEQALDREVSEVLANS 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V  ++F D  +  P ++LN   + +KV+TPF++A +    Q  + S P P   L+  V 
Sbjct: 122 EVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKF-QMPMVSKPQPQAELSKEVL 180

Query: 190 PS--------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +        ++P  F YP ++ +  +     + +  LR+F +E+   Y  +RD+PA+ G
Sbjct: 181 QAVEADRYHADVP--FSYPRESSE-RWHASTTDIVQQLREFARERSDAYQAERDLPAVDG 237

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSPYL+IG LSPRQC  RL  E  + L     G  +WL+E+IWREFY+HL+ F P +
Sbjct: 238 TSQLSPYLAIGALSPRQCIARLYAE--NPLPDLTEGKATWLSEIIWREFYQHLLVFEPKL 295

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             GK FIPW EKI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL
Sbjct: 296 VRGKGFIPWEEKIQWSYDEQAFERWKTGTTGYPIVDAAMRQLNMTGWMHNRLRMVVASFL 355

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  
Sbjct: 356 TKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSD 415

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           GTF+RHW+PE+  VP ++IH P  W   N   L+Y  P+VDHK     TL  +  AK+
Sbjct: 416 GTFVRHWVPEIKEVPNKFIHNPWLWSGFN--LLDYHKPMVDHKVEREITLRLFKNAKE 471


>gi|145300128|ref|YP_001142969.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852900|gb|ABO91221.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 473

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/479 (44%), Positives = 288/479 (60%), Gaps = 40/479 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW RNDLR+ DN AL  AC  +  +V A+F+ +P QW+QH ++  +  F+ A + ++
Sbjct: 1   MKLVWFRNDLRLADNPALRHACAEA-GEVAALFVISPTQWQQHKMAPIRQQFLLAQVDEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
            K+L+  GI     +   F +    L S   +  V++L+ N+  EI+E RRD  +   L 
Sbjct: 60  GKALAALGIPLHLLRVETFAEMPTALASLSRELGVSQLYANQAIEIDEQRRDLAVSAMLA 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL--------RSLPV 179
           +  V C  F+   +LPPG +L  + +M+KV+TPF +A ++ L +           R+ P+
Sbjct: 120 EQEVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALEEDGFVIHRAPAPRAEPL 179

Query: 180 PAIRLT---------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           P   LT         G VTP              DP +P+GE  A   L  F +  V  Y
Sbjct: 180 PWQPLTEREWSYGALGEVTP--------------DPRWPVGEAEAQRRLHAFLEPAVLDY 225

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIW 287
            E RD PA  GTS LSPYL+ G++SPRQC   L++    L  +P+S A   F WLNEL+W
Sbjct: 226 EETRDFPAQAGTSILSPYLAAGIISPRQCVGVLQQR---LGHRPQSKAQPGFVWLNELVW 282

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REFYRHL+   P++ M  PF P T  + W+ D     AW +G TG+PI+DAAMR L+  G
Sbjct: 283 REFYRHLLVLVPTLSMNLPFKPETATLPWSWDPVAFAAWCEGRTGYPIVDAAMRCLHATG 342

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNRLRMI ASFL KDL + WR+GE+YFMSQL+DGDLA+NNGGWQWAA TG D+ PYFR
Sbjct: 343 WMHNRLRMIVASFLTKDLHIHWRLGEDYFMSQLIDGDLAANNGGWQWAAGTGADAAPYFR 402

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           +FNPT QG+RFDPQG FIR W+ EL ++P  Y+H PH WL        YP P+VDH  A
Sbjct: 403 VFNPTTQGQRFDPQGDFIRTWVTELADIPAAYVHQPHDWLRLKG-GRGYPAPMVDHALA 460


>gi|149187439|ref|ZP_01865737.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
 gi|148838975|gb|EDL55914.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
          Length = 467

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/477 (44%), Positives = 288/477 (60%), Gaps = 16/477 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LV    DLR+TDN AL  A  + +  VIA F+ATPEQW+ H +S  Q+  I+  L  +
Sbjct: 1   MRLVLFNRDLRVTDNTALIEAI-DGETPVIAAFVATPEQWKSHSLSPIQADLIWRRLTVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L Q  +   Y +  ++  +  WL   C Q  V ++F NR YEINE  R + L +   
Sbjct: 60  QSELKQINVPLIYQEAQDYAAANTWLAEICHQFDVQEVFLNRDYEINEANRIQELSEIAG 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++FDD  +L PGS+LN     +KV+TPF+KA ++ + +  +R   V A+      
Sbjct: 120 TEWRVRAFDDKCILKPGSVLNQKGDYFKVFTPFKKAWLKIVGEFIVRKPQVSAL----VT 175

Query: 189 TPSNIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            P+N+   FD       P      + +     +  LR F  +K   Y  +RD PA+  TS
Sbjct: 176 APANL--LFDSSSSFSYPTRDSSGWSVDSHEIIQQLRDFSADKANLYHAERDFPALDSTS 233

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IG +S RQC  RLK +  +  +   +GA +WL+ELIWREFY+HL+ F P +C 
Sbjct: 234 MLSPYLAIGAISARQCVARLKYDAANTSLS--TGAETWLSELIWREFYQHLIYFEPKLCK 291

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              ++ W + ++W       + W +G TG+PI+DAAMRQLNT GWMHNRLRM+ ASFL K
Sbjct: 292 HHGYLSWEKHLKWTGKLDHFKQWCEGKTGYPIVDAAMRQLNTKGWMHNRLRMVVASFLTK 351

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR+GE+YFM+QL+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FD  G 
Sbjct: 352 DLHIDWRLGEQYFMTQLIDGDFAANNGGWQWCASTGCDGQPYFRIFNPISQGEKFDANGE 411

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FIR W+PELN+VP ++IH P  WL     +++YP PIVDHK     TL  Y  AK Q
Sbjct: 412 FIRTWIPELNSVPNKFIHKP--WLWNEFENVDYPQPIVDHKIQRDITLALYKDAKDQ 466


>gi|156976349|ref|YP_001447255.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
 gi|156527943|gb|ABU73028.1| hypothetical protein VIBHAR_05122 [Vibrio harveyi ATCC BAA-1116]
          Length = 471

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/478 (44%), Positives = 292/478 (61%), Gaps = 18/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  ++   V+A F++TPEQW++H ++  Q+  I   L+ + +
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DTGQPVVAAFVSTPEQWQEHNMAPMQADLIARRLVHLDE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L+   I   Y +   F D    +  + L      +  N  YE+NE   D+ +   L + 
Sbjct: 62  ELADLNIPLLYKEVPKFSDVTGVIKGWALSLNAKSVMANIHYEVNEQALDREIADVLAKS 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           +V  ++F D  +  P ++LN   + +KV+TPF++A +    Q  + S P P   +    T
Sbjct: 122 QVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKF-QMPMVSKPQPQAEILQEAT 180

Query: 190 -PSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            P    R+     F YP ++ +  F +   + +H LR+F +E+   Y E+RD+P++ GTS
Sbjct: 181 QPLEADRYHADVPFTYPRESSEQWF-VSTSDIVHHLREFARERSDAYQEKRDLPSVDGTS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEE--FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           QLSPYL+IG LSPRQC  RL  E    DL      G  +WL+E+IWREFY+HL+ F P +
Sbjct: 240 QLSPYLAIGALSPRQCIARLYAENPHTDL----TDGKATWLSEIIWREFYQHLLVFEPKL 295

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             GK FIPW +KIEW+ D    + WK G TG+PI+DAAMRQLNT GWMHNRLRMI ASFL
Sbjct: 296 VKGKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNTTGWMHNRLRMIVASFL 355

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  
Sbjct: 356 TKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSD 415

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           G F+R+W+PE+  VP ++IH P  W   N   L+Y  P+VDHK     TL  +  AK+
Sbjct: 416 GAFVRYWVPEIKQVPNKFIHNPWLWSGFN--LLDYHKPMVDHKVEREITLRLFKNAKE 471


>gi|15600828|ref|NP_232458.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121585968|ref|ZP_01675761.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae 2740-80]
 gi|153820061|ref|ZP_01972728.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae NCTC 8457]
 gi|227811685|ref|YP_002811695.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229506767|ref|ZP_04396276.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
 gi|229510438|ref|ZP_04399918.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
 gi|229517431|ref|ZP_04406876.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
 gi|229605241|ref|YP_002875945.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
 gi|254850324|ref|ZP_05239674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
 gi|255746116|ref|ZP_05420063.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
 gi|262158603|ref|ZP_06029717.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
 gi|298499922|ref|ZP_07009728.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
 gi|81858027|sp|Q9KNA8|PHR_VIBCH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|9657440|gb|AAF95971.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549904|gb|EAX59924.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae 2740-80]
 gi|126509396|gb|EAZ71990.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae NCTC 8457]
 gi|227010827|gb|ACP07038.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229345467|gb|EEO10440.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
 gi|229352883|gb|EEO17823.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
 gi|229357118|gb|EEO22036.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
 gi|229371727|gb|ACQ62149.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
 gi|254846029|gb|EET24443.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
 gi|255735870|gb|EET91268.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
 gi|262029483|gb|EEY48133.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
 gi|297541903|gb|EFH77954.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
          Length = 469

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/482 (45%), Positives = 294/482 (60%), Gaps = 26/482 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+L ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLS 119

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + +I  +FDD  +LPPGS+     + +KV+TPF++A +  L Q        P I    P
Sbjct: 120 EQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQP-------PVIGKNRP 171

Query: 188 VTPSNIP-----------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           V   N+P           + FDYP     P +    +     LR FC+E+V  Y + RD 
Sbjct: 172 VALWNVPSALAELVWHPEQAFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDF 230

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA +GTS LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A
Sbjct: 231 PAREGTSSLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVA 288

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P++   + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI
Sbjct: 289 IEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMI 348

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG+
Sbjct: 349 VASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGE 408

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FDP G FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  
Sbjct: 409 KFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKT 466

Query: 477 AK 478
           AK
Sbjct: 467 AK 468


>gi|254228731|ref|ZP_04922154.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25]
 gi|262396547|ref|YP_003288400.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|151938678|gb|EDN57513.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25]
 gi|262340141|gb|ACY53935.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
          Length = 471

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/476 (44%), Positives = 286/476 (60%), Gaps = 14/476 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  +S   V+A FIATPEQWR+H ++  Q+  I   L  +  
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DSGQPVVACFIATPEQWREHHMAPMQADLIARRLEYLND 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L    + F Y +  +F D  E +  +      T +  N  YE+NE   D  + + L  H
Sbjct: 62  ELESLNVPFLYKEVPSFSDCTEVISEWAKTLEATSVMANIHYEVNERELDAQVSEALASH 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  + F D  + PP ++LN   + +KV+TPF++A +    Q    + P     L+  + 
Sbjct: 122 DIDFELFHDKCVHPPTTVLNKQGEYFKVFTPFKRAWLTQF-QMPAVTKPQEQAPLSSKLL 180

Query: 190 PSNIP-RF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               P RF     F YP ++ +  F     + L  LR+F +E+   Y E+RD PAI GTS
Sbjct: 181 EQLEPIRFSSDFTFSYPRESSEDWF-ASTNDVLKQLREFARERSDAYKEERDFPAIDGTS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+IG LSPRQC  RL  E  +       G  +WL+E+IWREFY+HL+ F P +  
Sbjct: 240 QLSPYLAIGALSPRQCIARLYAE--NQQNDLTEGKATWLSEIIWREFYQHLLVFEPKLVK 297

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           GK FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL K
Sbjct: 298 GKGFIDWEDKIQWSYDEQAFERWKAGATGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTK 357

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G 
Sbjct: 358 DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQ 417

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           F+RHW+PE+ +VP +YIH P +W  +    L Y  P+VDHK     TL  + +AK+
Sbjct: 418 FVRHWVPEIKSVPNKYIHKPWTW--EGFSLLEYHKPMVDHKTEREITLRLFKSAKE 471


>gi|153831640|ref|ZP_01984307.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01]
 gi|148872150|gb|EDL70967.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01]
          Length = 471

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/478 (44%), Positives = 293/478 (61%), Gaps = 18/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  ++   V+A F++TPEQW++H ++  Q+  I   L+ + +
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DTGQPVVAGFVSTPEQWQEHNMAPMQADLIARRLVHLNE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L+   I   Y +   F +  E +  + L      +  N  YE+NE   D+ +   L + 
Sbjct: 62  ELADLNIPLLYKEVPKFSNVTEVIKDWALSLNAKSVMANIHYEVNEQALDREVADVLAKS 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-TGPV 188
           +V  ++F D  +  P ++LN   + +KV+TPF++A +    Q  + S P P   +    +
Sbjct: 122 QVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKF-QMPMVSKPEPQAEIPQEAI 180

Query: 189 TPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            P    R+     F YP ++ D  + +   + +H LR+F +E+   Y E+RD+P++ GTS
Sbjct: 181 QPLEADRYHADVPFTYPRESSDQWY-VSTSDIVHHLREFARERSDAYQEKRDLPSVDGTS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEE--FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           QLSPYL+IG LSPRQC  RL  E    DL      G  +WL+E+IWREFY+HL+ F P +
Sbjct: 240 QLSPYLAIGALSPRQCIARLYAENPHTDL----TDGKATWLSEIIWREFYQHLLVFEPKL 295

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             GK FIPW +KIEW+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL
Sbjct: 296 VKGKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNATGWMHNRLRMIVASFL 355

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  
Sbjct: 356 TKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSD 415

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           GTF+R+W+PE+  VP ++IH P  W   N   L+Y  P+VDHK     TL  +  AK+
Sbjct: 416 GTFVRYWVPEIKQVPNKFIHNPWLWSGFN--LLDYHKPMVDHKVEREITLRLFKNAKE 471


>gi|229514567|ref|ZP_04404028.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
 gi|229348547|gb|EEO13505.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
          Length = 469

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/482 (45%), Positives = 293/482 (60%), Gaps = 26/482 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + +I  +FDD  +LPPGS+     + +KV+TPF++A +  L Q        P I    P
Sbjct: 120 EQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQP-------PVIGKNRP 171

Query: 188 VTPSNIP-----------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           V   N+P           + FDYP     P +    +     LR FC+E+V  Y + RD 
Sbjct: 172 VALWNVPSALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDF 230

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA +GTS LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A
Sbjct: 231 PAQEGTSSLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVA 288

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P++   + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI
Sbjct: 289 IEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMI 348

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG+
Sbjct: 349 VASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGE 408

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FDP G FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  
Sbjct: 409 KFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKT 466

Query: 477 AK 478
           AK
Sbjct: 467 AK 468


>gi|262173169|ref|ZP_06040846.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
 gi|261890527|gb|EEY36514.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
          Length = 469

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/481 (45%), Positives = 290/481 (60%), Gaps = 24/481 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA  + +  V AV++ATP+QW QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVATPQQWLQHHLAPIQADFIWRRLAAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F ++   ++         ++  NR YE++E +RD   E+ L 
Sbjct: 60  QQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A + +L Q        P I     
Sbjct: 120 EQGISWSAFDDKCILPPGSLRTKQGEFFKVFTPFKRAWL-SLFQP-------PVIPRNHS 171

Query: 188 VTPSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             P N+P  F +     D MF          P+  +     LR FC+E+V  Y + RD P
Sbjct: 172 AAPWNVPNEFSHLVWNTDQMFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFP 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A +GTS LSPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A 
Sbjct: 232 AREGTSILSPYLAIGALSARQCVARLYRE--SEMSALSEGAQVWLSELIWREFYQHLVAI 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P++   + F+ W  ++EW  DS   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI 
Sbjct: 290 EPNISKSRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIV 349

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++
Sbjct: 350 ASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEK 409

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP G FIR W+PEL +V + YIH P ++   N  S+ YP P+VDHK+    TL  Y  A
Sbjct: 410 FDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPPPLVDHKQEREVTLRLYKTA 467

Query: 478 K 478
           K
Sbjct: 468 K 468


>gi|28901326|ref|NP_800981.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362883|ref|ZP_05775752.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030]
 gi|260880171|ref|ZP_05892526.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034]
 gi|260895288|ref|ZP_05903784.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus
           Peru-466]
 gi|28809873|dbj|BAC62814.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085662|gb|EFO35357.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus
           Peru-466]
 gi|308091875|gb|EFO41570.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034]
 gi|308112450|gb|EFO49990.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030]
          Length = 471

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/475 (44%), Positives = 290/475 (61%), Gaps = 12/475 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  ++   V+A FIATPEQW++H ++  Q+  I   L  V +
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DTGQPVVACFIATPEQWQEHHMAPMQADLIARRLEHVHQ 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++  I   Y +   FDD  + +  +  +   T    N  YE+NEV  D+ + + L +R
Sbjct: 62  ELTELNIPLLYKEVPRFDDCTQVICDWADKLNATAAMVNINYEVNEVELDRKVSQALDNR 121

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185
            V   +F D  +  P ++LN   + +KV+TPF++A +Q      V    R   +P+ +L 
Sbjct: 122 GVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSAQLA 181

Query: 186 GPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                     F F YP ++ +  + +   + L  LR F +E+   Y  +RD PAI GTSQ
Sbjct: 182 AVKQDGFDADFTFSYPRESSE-AWCVSTNDILKQLRTFARERSDGYQMKRDFPAIDGTSQ 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P +  G
Sbjct: 241 LSPYLAIGALSPRQCIARLYAENPQPDLS--EGKATWLSEIIWREFYQHLLVFEPKLVKG 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 299 RGFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G F
Sbjct: 359 LHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +RHW+PE+ +VP +++H P +W  +    L Y  P+VDHK     TL  + +AK+
Sbjct: 419 VRHWVPEIKSVPNKFVHKPWTW--EGFSLLEYHKPMVDHKVEREITLRLFKSAKE 471


>gi|153827504|ref|ZP_01980171.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae MZO-2]
 gi|149738567|gb|EDM52922.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae MZO-2]
          Length = 469

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/475 (45%), Positives = 292/475 (61%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178

Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            T + +     + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS
Sbjct: 179 STLAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++  
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  AK
Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468


>gi|258624237|ref|ZP_05719186.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio mimicus VM603]
 gi|258583388|gb|EEW08188.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio mimicus VM603]
          Length = 469

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/481 (44%), Positives = 289/481 (60%), Gaps = 24/481 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA  + +  V AV++A P+QW QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVAAPQQWHQHHLAPIQADFIWRRLAAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F ++   ++         ++  NR YE++E +RD   E+ L 
Sbjct: 60  QQELAAINVPLFYQQVADFREAATAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A + +L Q        P I     
Sbjct: 120 EQGISWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWL-SLFQP-------PVIPRNHS 171

Query: 188 VTPSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             P ++P  F +     D MF          P+  +     LR FC+E+V  Y + RD P
Sbjct: 172 AAPWDVPNEFSHLVWHTDQMFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFP 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A +GTS LSPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A 
Sbjct: 232 AREGTSVLSPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAI 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P++   + F+ W  ++EW  DS   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI 
Sbjct: 290 EPNISKSRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIV 349

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++
Sbjct: 350 ASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEK 409

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP G FIR W+PEL +V + YIH P ++   N  S+ YP P+VDHK+    TL  Y  A
Sbjct: 410 FDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPPPLVDHKQEREVTLRLYKTA 467

Query: 478 K 478
           K
Sbjct: 468 K 468


>gi|229522729|ref|ZP_04412145.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
 gi|229340714|gb|EEO05720.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
          Length = 469

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  ++  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLMWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWGVP 178

Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + +     + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS
Sbjct: 179 SALAELVWHPEQAFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IGVLS RQC  RL  E    + +P  GA  WL+ELIWREFY+HL+A  P++  
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGEPSEGAQVWLSELIWREFYQHLVAIEPNLSK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 SLDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  AK
Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468


>gi|262164645|ref|ZP_06032383.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
 gi|262027025|gb|EEY45692.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
          Length = 469

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/481 (44%), Positives = 289/481 (60%), Gaps = 24/481 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA  + +  V AV++ATP+QW QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVATPQQWLQHHLAPIQADFIWRRLSAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   I   Y Q ++F ++   ++         ++  NR YE++E +RD   E+ L 
Sbjct: 60  QQELAAINIPLFYQQVADFREAAHAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+       +KV+TPF++A + +L Q        P I     
Sbjct: 120 EQGISWSAFDDKCILPPGSVRTKQGDFFKVFTPFKRAWL-SLFQP-------PVIPRNHS 171

Query: 188 VTPSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             P ++P  F +     D +F          P+  +     LR FC+E+V  Y + RD P
Sbjct: 172 AAPWDVPNEFSHLVWNTDQVFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFP 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A +GTS LSPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A 
Sbjct: 232 AREGTSVLSPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAI 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P++   + F+ W  ++EW  DS   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI 
Sbjct: 290 EPNISKSRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIV 349

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++
Sbjct: 350 ASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEK 409

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP G FIR W+PEL +V + YIH P ++   N  S+ YP P+VDHK+    TL  Y  A
Sbjct: 410 FDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPAPLVDHKQEREVTLRLYKTA 467

Query: 478 K 478
           K
Sbjct: 468 K 468


>gi|153212812|ref|ZP_01948448.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae 1587]
 gi|124116325|gb|EAY35145.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae 1587]
          Length = 469

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178

Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + +     + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS
Sbjct: 179 SALAELVWHPEQTFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++  
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  AK
Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468


>gi|254284783|ref|ZP_04959750.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae AM-19226]
 gi|150425568|gb|EDN17344.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae AM-19226]
          Length = 469

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178

Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + +     + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS
Sbjct: 179 SALAELVWHPEQTFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++  
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  AK
Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468


>gi|229527954|ref|ZP_04417345.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
 gi|229334316|gb|EEN99801.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
          Length = 469

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178

Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + +     + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS
Sbjct: 179 SAFAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++  
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  AK
Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468


>gi|121730224|ref|ZP_01682610.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae V52]
 gi|147672153|ref|YP_001214921.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae O395]
 gi|262168985|ref|ZP_06036679.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
 gi|121628028|gb|EAX60578.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae V52]
 gi|146314536|gb|ABQ19076.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae O395]
 gi|227014689|gb|ACP10898.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
 gi|262022684|gb|EEY41391.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
          Length = 469

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/475 (45%), Positives = 292/475 (61%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +          ++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAKQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178

Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + +     + FDYP     P +    +     LR+FC+E+V  Y + RD PA +GTS
Sbjct: 179 SALAELVWHPEQAFDYPRIDSTP-WAADFETVRAQLREFCRERVQDYHQARDFPAQEGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IGVLS RQC  RL  E    + +   GA +WL+ELIWREFY+HL+A  P++  
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQAWLSELIWREFYQHLVAIEPNLSK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  AK
Sbjct: 416 FIRRWVPELRSVSSAYIHQPWAYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468


>gi|328469264|gb|EGF40210.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
          Length = 471

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/475 (44%), Positives = 289/475 (60%), Gaps = 12/475 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  ++   V+A F+ATPEQW++H ++  Q+  I   L  V +
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DTGQPVVACFVATPEQWQEHHMAPMQADLIARRLEHVHQ 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++  I   Y +   FDD  + +  +  +   T    N  YE+NEV  D+ + + L +R
Sbjct: 62  ELTELNIPLLYKEVPRFDDCTKVICDWADKLNATAAMVNINYEVNEVELDRKVSQALDNR 121

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185
            V   +F D  +  P ++LN   + +KV+TPF++A +Q      V    R   +P+ +L 
Sbjct: 122 GVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSAQLA 181

Query: 186 GPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    F F YP ++    +     + L  LR F +E+   Y  +RD PAI GTSQ
Sbjct: 182 AVKQDAFDADFTFSYPRES-SKAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGTSQ 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P +  G
Sbjct: 241 LSPYLAIGALSPRQCIARLYAENPQPDLS--EGKATWLSEIIWREFYQHLLVFEPKLVKG 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 299 RGFIDWEDKIQWSYDEQAFECWKTGSTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLAKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G F
Sbjct: 359 LHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +RHW+PE+ +VP +++H P +W  +    L Y  P+VDHK     TL  + +AK+
Sbjct: 419 VRHWVPEIKSVPNKFVHKPWTW--EGFSLLEYHKPMVDHKVEREITLRLFKSAKE 471


>gi|153835921|ref|ZP_01988588.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810]
 gi|149750675|gb|EDM61420.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810]
          Length = 471

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/479 (44%), Positives = 292/479 (60%), Gaps = 20/479 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  ++   V+A F+ATPEQW++H ++  Q+  I   L  V +
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DTGQPVVACFVATPEQWQEHHMAPMQADLIARRLEHVHQ 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++  I   Y +   FDD  + +  +  +   T +  N  YE+NEV  D+ + + L +R
Sbjct: 62  ELTELNIPLLYKEVPRFDDCTKVICDWADKLNATAVMVNINYEVNEVELDRKVSQALDNR 121

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---------QADLRSLPVP 180
            V   +F D  +  P ++LN   + +KV+TPF++A +Q            Q +L S  + 
Sbjct: 122 GVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQKQNELPSEQLA 181

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A++  G     +    F YP ++ +  +     + L  LR F +E+   Y  +RD PAI 
Sbjct: 182 AVKQDG----FDADFTFSYPRESSE-AWCASTNDILKQLRTFARERSDGYQMKRDFPAID 236

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P 
Sbjct: 237 GTSQLSPYLAIGALSPRQCIARLYAENPQPDLS--EGKATWLSEIIWREFYQHLLVFEPK 294

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G+ FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASF
Sbjct: 295 LVKGRGFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASF 354

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD 
Sbjct: 355 LTKDLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDS 414

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            G F+RHW+PE+ +VP ++IH P +W  +    L Y  P+VDHK     TL  + +AK+
Sbjct: 415 DGQFVRHWVPEIKSVPNKFIHKPWTW--EGFSLLEYHKPMVDHKVEREITLRLFKSAKE 471


>gi|27904772|ref|NP_777898.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46396630|sp|Q89AJ9|PHR_BUCBP RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|27904170|gb|AAO27003.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 478

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/480 (43%), Positives = 305/480 (63%), Gaps = 16/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V+L+W RNDLR++DN AL+ +C N+ + V+A+FIATP+QW +H ++ ++   IY +++
Sbjct: 1   MNVNLMWFRNDLRLSDNSALHFSCRNNASTVLALFIATPKQWERHCLAPKKKMLIYKNIV 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++K +++ GI+F Y++ +++ +S  ++  +C   +VT +F+N +YE  E +RDK+++K+
Sbjct: 61  ALKKKITELGIIFYYYESTDYLESTNYIIEFCKIHKVTSIFFNLEYEFYERQRDKIIKKK 120

Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   I    F DSVL+ PGSI N   +MYK ++ F+   I+ L        P P  +  
Sbjct: 121 LKKNNIIINCFHDSVLITPGSIKNSYGKMYKKFSYFKYKCIKQLQLNIPSCFPKPQNKNL 180

Query: 186 GP--VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                    IP F  Y  +    +FPIGE      L+ F K     Y   ++I  +  TS
Sbjct: 181 HDHYSLDFTIPIFHTYLEKFDANIFPIGEDIVYEKLKFFIKYAFNKYNFDQEIFELNSTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS +LSIGV+SPRQC   L +E+ D++ K +     W+NEL+WREFY+HL+ FYP++  
Sbjct: 241 MLSAHLSIGVISPRQCVTLLFKEYPDIIHKLEEC--KWINELLWREFYQHLLYFYPNIGQ 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +    W  +I+W+ + + L  WKQG TG+PIIDA MRQL  +GW+ NRLRMITASFLVK
Sbjct: 299 NQSLYHWENRIKWDNNLYYLNLWKQGNTGYPIIDAGMRQLKQLGWISNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GEEYFMSQL+DGD ASNNG WQW AS G DS+PYFRIFNP +Q K+FD    
Sbjct: 359 NLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASVGTDSMPYFRIFNPMLQSKKFDINAK 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
           FIR ++PEL+NV T  IH P      N +   YP PI++           YY +KK++LL
Sbjct: 419 FIRKYIPELSNVSTYNIHNPCDNNKTNKIHSKYPQPIIN-----------YYHSKKKTLL 467


>gi|258622171|ref|ZP_05717197.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio mimicus VM573]
 gi|258585495|gb|EEW10218.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio mimicus VM573]
          Length = 469

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/479 (44%), Positives = 292/479 (60%), Gaps = 20/479 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL  A  + +  V AV++ATP+QW+QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWFRRDLRSFDNTALTVAIESGET-VAAVYVATPQQWQQHHLAPIQADFIWRRLAAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           Q+ L+   +   Y Q ++F ++   ++         ++  NR YE++E +RD   E+ L 
Sbjct: 60  QQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  ++  +FDD  +LPPGS+     + +KV+TPF++A + +L Q  +    +P      P
Sbjct: 120 EQGILWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWL-SLFQPPV----IPRNHSAAP 174

Query: 188 VTPSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              SN          + FDY  +     +P+  +     LR FC+E+V  Y + RD PA 
Sbjct: 175 WDVSNEFSHLVWHTDQIFDYT-RVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAR 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GTS LSPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A  P
Sbjct: 234 EGTSVLSPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEP 291

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           ++   + F+ W  ++EW  DS   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI AS
Sbjct: 292 NISKSRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FD
Sbjct: 352 FLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P G FIR W+PEL +V + YIH P ++   N  S+ YP P+VDHK+    TL  Y  AK
Sbjct: 412 PNGDFIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPAPLVDHKQEREVTLRLYKTAK 468


>gi|254224596|ref|ZP_04918212.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae V51]
 gi|125622659|gb|EAZ50977.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae V51]
          Length = 469

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/475 (45%), Positives = 290/475 (61%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL  A ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTTALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178

Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + +     + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS
Sbjct: 179 SALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++  
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  AK
Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468


>gi|229526306|ref|ZP_04415710.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
           VL426]
 gi|229336464|gb|EEO01482.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
           VL426]
          Length = 469

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQFLS 119

Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWFAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178

Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + +     + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS
Sbjct: 179 SALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++  
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  AK
Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAIN--SVLYPARLVDHKQEREVTLRLYKTAK 468


>gi|37676017|ref|NP_936413.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016]
 gi|37200557|dbj|BAC96383.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016]
          Length = 471

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/484 (44%), Positives = 286/484 (59%), Gaps = 28/484 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVWLR DLR  DN AL  A   S  +V+A F+ATP QWR H ++  Q+  I   L 
Sbjct: 1   MAMKLVWLRRDLRCVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+   I   Y +  ++  S   + ++  Q  V+++  NR+YE+NE  RD+ L  R
Sbjct: 60  VLAEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVLNREYEVNERVRDEQLVNR 119

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    +     +D  +  PG +LN     +KV+TPF+KA         L+S   P I  T
Sbjct: 120 LASSEMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAW--------LKSFIPPQIIKT 171

Query: 186 GPVTPSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               P  +P             F YP Q+ +  + +  Q     LR+FC E+V  Y EQR
Sbjct: 172 SAAQPVVLPEALQSSLWHEQAPFSYPRQSSE-AWSVDSQQIRETLRRFCHEEVDRYHEQR 230

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D PA  GTS LSPYL+IG +S RQC  RL  +   L     +G   WL+ELIWREFY HL
Sbjct: 231 DFPATAGTSVLSPYLAIGAISVRQCIARLYWQQSYL----SNGREVWLSELIWREFYHHL 286

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           + F P +  G+ F+ W + + W       + W +G TG+PI+DAAMRQLN  GWMHNRLR
Sbjct: 287 IHFEPKLVKGQGFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLR 346

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL KDL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D  PYFRIFNP  Q
Sbjct: 347 MIVASFLTKDLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQ 406

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           G++FDP G F++HWLPEL  VP++++H P  WL    + L+YP P+VDHK+    TL+ Y
Sbjct: 407 GEKFDPNGEFVKHWLPELAEVPSKFVHQPWKWL--GHMRLDYPAPMVDHKQEREITLSLY 464

Query: 475 YAAK 478
             AK
Sbjct: 465 TQAK 468


>gi|183179740|ref|ZP_02957951.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae MZO-3]
 gi|183013151|gb|EDT88451.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae MZO-3]
          Length = 469

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/475 (45%), Positives = 290/475 (61%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWNVP 178

Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + +     + F YP     P +    +     LR FC+E+V  Y + RD PA +GTS
Sbjct: 179 SALAELVWHPEQTFGYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++  
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  AK
Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468


>gi|260901113|ref|ZP_05909508.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037]
 gi|308109383|gb|EFO46923.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037]
          Length = 471

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/479 (43%), Positives = 290/479 (60%), Gaps = 20/479 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  ++   V+A F+ATPEQW++H ++  Q+  I   L  V +
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DTGQPVVACFVATPEQWQEHHMAPMQADLIARRLQHVHQ 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++  I     +   FDD  + +  +  +   T    N  YE+NEV  D+ + + L +R
Sbjct: 62  ELTELNIPLLCKEVPRFDDCTKVICDWADKLNATAAMVNINYEVNEVELDRKVSQALDNR 121

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---------QADLRSLPVP 180
            V   +F D  +L P ++LN   + +KV+TPF++A +Q            Q +L S  + 
Sbjct: 122 GVEFHAFHDKCVLAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSEQLE 181

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A++  G     +    F YP ++ +  +     + L  LR F +E+   Y  +RD PAI 
Sbjct: 182 AVKQDG----FDADYTFSYPRESSE-AWCASTNDILKQLRTFARERSDGYQMKRDFPAID 236

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P 
Sbjct: 237 GTSQLSPYLAIGALSPRQCIARLYAENPQPDLS--EGKATWLSEIIWREFYQHLLVFEPK 294

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G+ FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASF
Sbjct: 295 LVKGRGFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASF 354

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD 
Sbjct: 355 LTKDLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDS 414

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            G F+RHW+PE+  VP +++H P +W  +    L Y  P+VDHK     TL  + +AK+
Sbjct: 415 DGQFVRHWVPEIKRVPNKFVHKPWTW--EGFSLLEYHKPMVDHKVEREITLRLFKSAKE 471


>gi|327485291|gb|AEA79697.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3894-4]
          Length = 469

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/475 (45%), Positives = 290/475 (61%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +          ++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAIQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178

Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + +     + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS
Sbjct: 179 SALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRGFCRERVQDYHQARDFPAREGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++  
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  AK
Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468


>gi|297579803|ref|ZP_06941730.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
 gi|297535449|gb|EFH74283.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
          Length = 469

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQVAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178

Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + +     + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS
Sbjct: 179 SALAELVWHPEQTFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++  
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  AK
Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 468


>gi|254448088|ref|ZP_05061551.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
 gi|198262214|gb|EDY86496.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
          Length = 486

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/480 (42%), Positives = 287/480 (59%), Gaps = 12/480 (2%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           VW R+DLR  DN+AL  A   ++A+   +IA +IATP+QW +H +SA Q  FI   L  +
Sbjct: 9   VWFRSDLRCHDNRALSRAAEQANAQNLPLIAFYIATPKQWLEHDVSALQVDFILRHLPIL 68

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L++  I F+   C +F    E L   C    + +LF NR+Y +NE++RD+ + + L+
Sbjct: 69  QTQLARYQIPFRVWVCDDFSQVPELLLEQCQNWNIQQLFANREYPVNEIQRDQRVARTLE 128

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I    FDD  LL PGS+       YKV+TPF+K   + L +AD+   P   I    P
Sbjct: 129 STSIETHFFDDFTLLAPGSVRTGQGDPYKVFTPFKKQCFKQLQEADIAEAPTARIEAEAP 188

Query: 188 V-----TPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                  P ++  F  +   + ++ ++P GE  AL  L  F + ++++Y ++RD P  +G
Sbjct: 189 SHFAQSPPESLADFAPHLDTKTLEHLWPAGESAALERLETFAEHRLHHYQQRRDYPNAKG 248

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS +S YL+IG LSPR                   GA +W++EL+WR+FY+H++  +P V
Sbjct: 249 TSAISAYLAIGSLSPRAAMRAATRANQGEWTSGSEGAQTWISELLWRDFYQHILTAFPRV 308

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G+ F P TE I W  D    QAW +G TG PI+DAAMRQL   GWMHNRLRM+TA FL
Sbjct: 309 SRGRAFQPHTENIVWRDDPEAFQAWCEGRTGIPIVDAAMRQLLQTGWMHNRLRMVTAMFL 368

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+DWR GE+YF  QL+DG+L +NNGGWQWAASTG D+ PYFRIFNP  QG+RFD  
Sbjct: 369 SKNLLIDWRRGEQYFRRQLIDGELGANNGGWQWAASTGTDAAPYFRIFNPVTQGQRFDKD 428

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           G FIRH++PEL ++P +Y+H P  W   +   L+YP PIVD K +    +  +  A + S
Sbjct: 429 GAFIRHYVPELKDLPNKYLHEP--WTHPDADQLDYPQPIVDLKLSRQRAIEVFRQASEHS 486


>gi|119773948|ref|YP_926688.1| deoxyribodipyrimidine photo-lyase [Shewanella amazonensis SB2B]
 gi|119766448|gb|ABL99018.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella amazonensis
           SB2B]
          Length = 475

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/480 (44%), Positives = 287/480 (59%), Gaps = 20/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           LVW R DLR  DN+AL  AC +++A   KV A+FIA+P QW++H +  RQ  F+ A+L  
Sbjct: 4   LVWFRQDLRTIDNQALTRACEDANARGGKVHALFIASPGQWQRHDMGVRQQRFLLANLNA 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKR 126
           + + L+  GI     +   F  +   L ++C +  ++ +F   Q EI+E RRD+ LL+K 
Sbjct: 64  LGEELASMGIPLSLLKVDFFYQTAAALKAFCKEHGISSIFAGAQIEIDERRRDQALLDKG 123

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQ-----MYKVYTPFRKALIQNLVQADLRSLPVPA 181
              ++     D+  +LPPGS++    +     MY+V+TPF +   +      L  +P PA
Sbjct: 124 FPLQLT----DEHCMLPPGSVVTQGQRDQGGAMYRVFTPFARRWREIAASRSLWPIPAPA 179

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              T PV  +    + D         +P+G+  AL  L +F +  +  Y E RD PAI G
Sbjct: 180 SVAT-PVVFTPFAFWGDINDDPALDKWPVGQDAALEKLSRFRELGMGRYGENRDFPAIDG 238

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSPYL++GV+SPRQC   L E+F D+ +   S A  WLNEL+WREFYRHL+  +P +
Sbjct: 239 TSSLSPYLALGVISPRQCLAALLEDFPDVFVNESSPARPWLNELVWREFYRHLLVAFPGL 298

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            M K F P  + I W  D    +AWK G TG+P++DAAMRQLN  GWMHNRLRM+ ASFL
Sbjct: 299 SMAKNFNPLGDGIRWRNDETEFEAWKHGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFL 358

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+DWR GE YF  QL+DG LA+NNGGWQWAA TG D+ PYFRIFNP  Q ++FDP+
Sbjct: 359 TKHLLIDWRWGERYFREQLIDGCLAANNGGWQWAAGTGCDAQPYFRIFNPMSQSEKFDPE 418

Query: 422 GTFIRHWLPELNNVPTQYIH--APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           G FIR +LPEL   PT+ +H  +     D    S  YP PIV+H +A    L+     KK
Sbjct: 419 GRFIRKYLPELAQWPTRSLHQASGPGLFD----SSGYPSPIVEHTQARVRALDVMAVMKK 474


>gi|269965348|ref|ZP_06179468.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
 gi|269829994|gb|EEZ84223.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
          Length = 471

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/483 (43%), Positives = 282/483 (58%), Gaps = 28/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  +S   V+A FIATPEQWR+H ++  Q+  I   L  + +
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DSGQPVVACFIATPEQWREHHMAPMQADLIARRLACLNE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L    I F Y +  +F D  + +  +      T +  N  YE+NE   D  + + L  H
Sbjct: 62  ELESLNIPFLYKEVPSFSDCTDVISGWAETLEATSVMANIHYEVNERELDTQVSEALASH 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  + F D  +  P ++LN   + +KV+TPF++A         L    +P +       
Sbjct: 122 DIEFELFHDKCVHAPTTVLNKQGEYFKVFTPFKRAW--------LTQFHMPTVVKPHEQA 173

Query: 190 PSN--------IPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           P N          RF     F YP ++ +        + L  LR+F +E+   Y  +RD 
Sbjct: 174 PLNKKVLEQLESARFNSSFTFSYPRESSEDWLA-STNDILKQLREFARERSDAYQSERDF 232

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PAI GTSQLSPYL+IG LSPRQC  RL  E  +       G  +WL+E+IWREFY+HL+ 
Sbjct: 233 PAIDGTSQLSPYLAIGALSPRQCIARLYAE--NQQNDLTEGKATWLSEIIWREFYQHLLV 290

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           F P +  GK FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI
Sbjct: 291 FEPKLVKGKGFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMI 350

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG+
Sbjct: 351 VASFLTKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGE 410

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FD  G F+RHW+PE+ +VP +YIH P +W  +    L Y  P+VDHK     TL  + +
Sbjct: 411 KFDANGEFVRHWVPEIKSVPNKYIHKPWTW--EGFSLLEYHKPMVDHKTEREITLQLFKS 468

Query: 477 AKK 479
           AK+
Sbjct: 469 AKE 471


>gi|91223275|ref|ZP_01258541.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
 gi|91192088|gb|EAS78351.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
          Length = 471

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/483 (43%), Positives = 282/483 (58%), Gaps = 28/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA  +S   V+A FIATPEQWR+H ++  Q+  I   L  + +
Sbjct: 3   LVWFRRDLRTLDHTALKAAL-DSGHPVVACFIATPEQWREHHMAPMQADLIARRLACLNE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L    I F Y +  +F D  + +  +      T +  N  YE+NE   D  + + L  H
Sbjct: 62  ELESLNIPFLYKEVPSFSDCTDVISGWAETLEATSVMANIHYEVNERELDTQVSEALASH 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  + F D  +  P ++LN   + +KV+TPF++A         L    +P +       
Sbjct: 122 DIEFELFHDKCVHAPTTVLNKQGEYFKVFTPFKRAW--------LTQFHMPTVVKPHEQA 173

Query: 190 PSN--------IPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           P N          RF     F YP ++ +        + L  LR+F +E+   Y  +RD 
Sbjct: 174 PLNKKVLEQLESARFNSSFTFSYPRESSEDWLA-STNDILKQLREFARERSDAYQSERDF 232

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PAI GTSQLSPYL+IG LSPRQC  RL  E  +       G  +WL+E+IWREFY+HL+ 
Sbjct: 233 PAIDGTSQLSPYLAIGALSPRQCIARLYAE--NQQNDLTEGKATWLSEIIWREFYQHLLV 290

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           F P +  GK FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI
Sbjct: 291 FEPKLVKGKGFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMI 350

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG+
Sbjct: 351 VASFLTKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGE 410

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FD  G F+RHW+PE+ +VP +YIH P +W  +    L Y  P+VDHK     TL  + +
Sbjct: 411 KFDANGEFVRHWVPEIKSVPNKYIHKPWTW--EGFSLLEYHKPMVDHKTEREITLQLFKS 468

Query: 477 AKK 479
           AK+
Sbjct: 469 AKE 471


>gi|311693606|gb|ADP96479.1| deoxyribodipyrimidine photolyase [marine bacterium HP15]
          Length = 467

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/471 (42%), Positives = 280/471 (59%), Gaps = 7/471 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW RNDLR+ DN AL AAC +S+ +V A FI TP+QW++H  S  +  F+ A    +
Sbjct: 2   TQLVWFRNDLRVADNPALTAACESSE-EVRACFILTPDQWQEHDWSPARVQFVVAHANAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
            + L++ GI   + Q   FDDS+  L+S+C +  VT L +N +Y +NE +RDK L+ R  
Sbjct: 61  AEELAKLGIPLSFIQAKRFDDSLGKLESHCEEHGVTALHFNEEYGVNERKRDKALKHRFD 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q  +  + + D  + P G IL      Y V+TPF +     + +      P P  R    
Sbjct: 121 QLGIAVRKYRDQTVAPVGEILTQQNDPYSVFTPFSRRWRSWIEETHPGLFPTPKARGNA- 179

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V+P  I    +    A +P+   GE  A   L +F +++   Y E+RD PAI GTSQ+SP
Sbjct: 180 VSPEQIDAIPEAFRDAPEPLVATGEDAAHDQLERFLEKRGGAYKEKRDFPAIDGTSQISP 239

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+ GVLS RQC    ++         + G  +W+ E+ WR+FY +++  +P V M + F
Sbjct: 240 YLANGVLSGRQCLIAGRQ--AQGAGGNQEGLGTWITEIAWRDFYINILYHFPRVSMHRAF 297

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P TE +EWN      +AWK G TG PI+DAAMRQLN  GWMHNRLRMITA +L K+L +
Sbjct: 298 KPETETLEWNNPGDRFEAWKTGNTGVPIVDAAMRQLNQTGWMHNRLRMITAMYLTKNLFI 357

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE YFMS+L+DG LASNNGGWQW+ASTG D+ PYFR+FNP  Q +RFDP G FIR 
Sbjct: 358 DWRLGEAYFMSKLIDGFLASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPDGDFIRE 417

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           W+PEL  + ++ IH P +      +   YP  IVD K++    + ++   K
Sbjct: 418 WVPELAKLDSKRIHDPGA--KGGVIPKGYPRQIVDLKESRKEAIAKFQELK 466


>gi|330722082|gb|EGG99998.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC2047]
          Length = 463

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/458 (45%), Positives = 287/458 (62%), Gaps = 6/458 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLRNDLR+ DN ALYAACH + A V AV+IATP+QW QH  SA +  F  A+L  +
Sbjct: 1   MKLVWLRNDLRLDDNPALYAACHGT-APVRAVYIATPKQWLQHDESAAKLGFRSAALTDL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L++ GI F+  Q S F D  + L  YC +  VT L++NR++ ++E  RD  + +RL 
Sbjct: 60  KSKLAELGIGFELLQASYFSDIADLLADYCQRHAVTDLYFNREFPLHEQDRDNQVCQRLT 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              I     ++ LL    I N   Q YKV+TP+ KA ++ L   D   L  P    +   
Sbjct: 120 ALNINCHTSNADLLICAPIQNLQGQPYKVFTPWYKAWLKQLNNQDNTPLTAPKAVGSALN 179

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           +P+N            D ++P  EQ+AL  L +FC+ ++++Y + RD PAI GTS LSPY
Sbjct: 180 SPNNEHVKLPNSGAFRDDLWPASEQDALQHLAQFCQRRLHHYSDTRDFPAINGTSTLSPY 239

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G++SPR+C   +++   +     +  A  WL EL WREFYR+LM  +P +  GKPF 
Sbjct: 240 LASGLVSPRRCLMAIQQTAFEQGWDWRESA--WLRELGWREFYRYLMISFPHISHGKPFK 297

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              ++  W ++  LL AW+ G TGFPIIDAAMRQL +  WMHNRLRM+ ASFL K +L+D
Sbjct: 298 TTPQQWPWRENPALLSAWQTGNTGFPIIDAAMRQLVSTSWMHNRLRMLVASFLCKLMLID 357

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE +FM QL+DGD  SNNGGWQW+ASTG D+ P+FRIFNPT Q ++FD +G FIR +
Sbjct: 358 WREGERFFMQQLIDGDFTSNNGGWQWSASTGCDASPWFRIFNPTTQSQKFDAEGKFIRKF 417

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           LPEL  +  + IH P + L +    L YP PI+D+K A
Sbjct: 418 LPELAELDNKQIHNPSNTLRQ---KLGYPDPIIDYKTA 452


>gi|27367890|ref|NP_763417.1| Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6]
 gi|27359463|gb|AAO08407.1|AE016813_159 Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6]
          Length = 471

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/484 (43%), Positives = 286/484 (59%), Gaps = 28/484 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVWLR DLR  DN AL  A   S  +V+A F+ATP QWR H ++  Q+  I   L 
Sbjct: 1   MAMKLVWLRRDLRSVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEK 125
            + + L+   I   Y +  ++  S   + ++  Q  V+++  NR+YE+NE VR ++L+ +
Sbjct: 60  VLAEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVLNREYEVNERVRDEQLVNQ 119

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                +     +D  +  PG +LN     +KV+TPF+KA +++ V         P I  T
Sbjct: 120 LASSEIGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFVP--------PQIIKT 171

Query: 186 GPVTPSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               P  +P             F YP Q+ +  + +  Q     LR FC E+V  Y EQR
Sbjct: 172 SAAQPVVLPEALQSSLWHEQAPFSYPRQSSEE-WSVDSQQIRETLRHFCHEEVDRYHEQR 230

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D PA  GTS LSPYL+IG +S RQC  RL  +   L     +G   WL+ELIWREFY HL
Sbjct: 231 DFPATAGTSVLSPYLAIGAISVRQCIARLYWQQSYL----SNGREVWLSELIWREFYHHL 286

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           + F P +  G+ F+ W + + W         W +G TG+PI+DAAMRQLN  GWMHNRLR
Sbjct: 287 IHFEPKLVKGQGFVEWEKHLLWPAKPDWFDRWCRGETGYPIVDAAMRQLNQTGWMHNRLR 346

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL KDL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D  PYFRIFNP  Q
Sbjct: 347 MIVASFLTKDLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQ 406

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           G++FDP G F++HWLPEL  VP++++H P +W     + L+YP P+VDHK+    TL+ Y
Sbjct: 407 GEKFDPNGEFVKHWLPELVEVPSKFVHQPWNW--PGHMQLDYPAPMVDHKQEREITLSLY 464

Query: 475 YAAK 478
             AK
Sbjct: 465 TQAK 468


>gi|320158160|ref|YP_004190538.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O]
 gi|319933472|gb|ADV88335.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O]
          Length = 469

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/480 (43%), Positives = 285/480 (59%), Gaps = 28/480 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR  DN AL  A   S  +V+A F+ATP QWR H ++  Q+  I   L  + +
Sbjct: 3   LVWLRRDLRSVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLAVLAE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKRLQH 129
            L+   I   Y +  ++  S   + ++  Q  V+++ +NR+YE+NE VR ++L+ +    
Sbjct: 62  ELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVFNREYEVNERVRDEQLINQLASS 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +     +D  +  PG +LN     +KV+TPF+KA +++ V         P I  T    
Sbjct: 122 EMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFVP--------PQIIKTSAAQ 173

Query: 190 PSNIPRF-----------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P  +P             F YP ++ +  + +  Q     LR FC E+V  Y EQRD PA
Sbjct: 174 PVVLPEALQPSLWHEQAPFSYPRESSE-AWSVDSQQIRETLRHFCHEEVDRYHEQRDFPA 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             GTS LSPYL+IG +S RQC  RL  +   L     +G   WL+ELIWREFY HL+ F 
Sbjct: 233 TAGTSVLSPYLAIGAISVRQCIARLYWQQSYL----SNGREVWLSELIWREFYHHLIHFE 288

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +  G+ F+ W + + W       + W +G TG+PI+DAAMRQLN  GWMHNRLRMI A
Sbjct: 289 PKLVKGQGFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++F
Sbjct: 349 SFLTKDLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G F++HWLPEL  VP++++H P +W     + L+YP P+VDHK+    TL+ Y  AK
Sbjct: 409 DPNGEFVKHWLPELAQVPSKFVHQPWNW--PGHMQLDYPAPMVDHKQEREITLSLYTQAK 466


>gi|94501522|ref|ZP_01308040.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
 gi|94426340|gb|EAT11330.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
          Length = 478

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/466 (45%), Positives = 281/466 (60%), Gaps = 14/466 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S + VW R DLR+ DN AL+ A  N   + IA +    +QW +H +S RQ   I   L  
Sbjct: 3   SFNAVWFRRDLRVHDNPALFHAMKN--GQCIAFYCLAQKQWDEHQVSLRQRSLIRQQLED 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL+  G+       ++F    +   S   Q  V +LF N +YE+NEV   K + + L
Sbjct: 61  LTQSLAALGVPLIVIDTADFKSIPKTFVSVLQQYNVEQLFCNAEYEVNEVALTKNVTEAL 120

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--VQADLRSLPVPAIRL 184
           Q + I C  + D  L+ PG I+N   Q YKV+T F+KA +  L     DL  LP    + 
Sbjct: 121 QQQDIKCHEYHDQCLIQPGVIVNKQDQPYKVFTAFKKAYLAQLDIYMRDLYPLPK---KQ 177

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             P   ++I          IDP +   EQ AL  L +FCK+++  Y   RDIP++ GTS 
Sbjct: 178 QAPKVKTDISALQSIAQVDIDP-WQGSEQVALDALDEFCKDRIKAYKRDRDIPSLDGTST 236

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LS RQCW ++ ++      KP+ G  +W +ELIWR+FYRHL+ F+P VC  
Sbjct: 237 LSPYLAIGSLSVRQCW-QMSQQVSPSGSKPE-GIATWQSELIWRDFYRHLIYFFPHVCQY 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           K F   T+ + W KD  L QAW  G TG+P++DAAMRQLN  GWMHNRLRM+ A FL K 
Sbjct: 295 KAFKQETDHLPWKKDQALFQAWCDGRTGYPLVDAAMRQLNQTGWMHNRLRMVAAMFLSKH 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR+GE YFM QL+DGDLASNNGGWQW+ASTG D+VPYFRIFNP  Q +RFD +GTF
Sbjct: 355 LFIDWRLGEAYFMQQLIDGDLASNNGGWQWSASTGVDAVPYFRIFNPIRQSERFDSKGTF 414

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           +R ++PEL ++  + IH P     K    L YP PIVDHK+A   T
Sbjct: 415 LRQYVPELASLDDKRIHNPDPITVKK---LGYPAPIVDHKQAVVQT 457


>gi|163800188|ref|ZP_02194089.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
 gi|159175631|gb|EDP60425.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
          Length = 471

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/478 (43%), Positives = 282/478 (58%), Gaps = 18/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL AA       V+A F++TPEQWR+H +S  Q+  I   L+ +++
Sbjct: 3   LVWFRRDLRTLDHTALKAALETGQP-VVAGFVSTPEQWREHNMSPMQADLIARRLVLLEE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I   Y +   F D  + +  + +   V  +  N  YE+NE   D+ +   L   
Sbjct: 62  ELTGLNIPLIYKEVPKFADVGKVIHQWAVSLNVKSVMANIHYEVNEQALDREVVNLLNES 121

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I   +F D  +  P ++LN   + +KV+TPF++A +       +   P P   L+  V 
Sbjct: 122 SITFDAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLSQFQMPKVWK-PEPQAALSKEVL 180

Query: 190 PS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            +      ++   F YP ++ +  + +     L  LR F +E+   Y  +RD PA+ GTS
Sbjct: 181 QAVKADRYHVDVSFSYPRESSE-RWHVSTSAILQQLRGFTRERSDAYQAERDFPAVDGTS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEE--FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           QLSPYL+IG LSPRQC  RL  E    DL      G  +WL+E+IWREFY+HL+ F P +
Sbjct: 240 QLSPYLAIGALSPRQCIARLHAENPHTDL----TEGKATWLSEIIWREFYQHLLVFEPKL 295

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G+ FI W +KIEW+ D    + W  G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL
Sbjct: 296 VKGQGFIQWEDKIEWSYDEVAFERWSNGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFL 355

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  
Sbjct: 356 TKDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDHD 415

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           GTF+RHW+PE+  VP ++IH P  W   N   L+Y  P+VDHK     TL  +  AK+
Sbjct: 416 GTFVRHWVPEIKQVPNKFIHNPWLWSGFN--LLDYHKPMVDHKVEREITLRLFKNAKE 471


>gi|153001581|ref|YP_001367262.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185]
 gi|151366199|gb|ABS09199.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185]
          Length = 500

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/481 (42%), Positives = 283/481 (58%), Gaps = 15/481 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIA---VFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W R DLR+ DN+AL AAC  + A  +A   ++IATP QW++H ++  Q  FI   +  
Sbjct: 23  LMWFRQDLRLADNQALTAACDWARANGVALKAIYIATPTQWQRHDVAPIQLDFIERHINL 82

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+  GI F+  Q   F D   ++  YC QQ + ++F   + EINE +RD+     +
Sbjct: 83  LAQGLASLGIAFELIQLDTFADVPAFISDYCHQQGIDRVFAGSEPEINEQQRDQAC---I 139

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q  +     D+  LL PG++LN +  MYKV+TPF +   +   +  +  LPVPA    GP
Sbjct: 140 QAGIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPLPVPAP--LGP 197

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V     P FF++  +    ++  GE  A  IL  F ++KV  Y + RD PAI GTS +SP
Sbjct: 198 VLTEPKPHFFNHVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPAIDGTSSISP 257

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+IGV+SPRQC   L   F ++++   S A +WLNEL WREFYRHL+  +P +     F
Sbjct: 258 YLAIGVISPRQCVAALLHHFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNHNF 317

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL K LL+
Sbjct: 318 NRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLI 377

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FDP G+FIR 
Sbjct: 378 DWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPDGSFIRK 437

Query: 428 WLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +LPEL +   + +H P +    +       +    YP  IV+H  A    L      KK 
Sbjct: 438 YLPELASWGIKQLHQPSTAQTPSLFEQPLFNTKTAYPSAIVEHSAARARALTVLGVLKKA 497

Query: 481 S 481
           +
Sbjct: 498 T 498


>gi|126175256|ref|YP_001051405.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS155]
 gi|125998461|gb|ABN62536.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella baltica OS155]
          Length = 505

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/481 (41%), Positives = 284/481 (59%), Gaps = 15/481 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIA---VFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W R DLR+ DN+AL AAC  + A  +A   ++IATP QW++H ++  Q  FI   +  
Sbjct: 28  LMWFRQDLRLADNQALTAACDWARANGVALKAIYIATPTQWQRHDVAPIQLDFIERHINL 87

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+  GI F+  Q   F D   ++  YC QQ ++++F   + EINE +RD+     +
Sbjct: 88  LAQGLASLGITFELIQLDAFADVPAFIGHYCQQQGISRVFAGSEPEINEQQRDQAC---I 144

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q  +     D+  LL PG++LN +  MYKV+TPF +   +   +  +  LPVPA    GP
Sbjct: 145 QAGIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAIFLLPVPAP--LGP 202

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V     P  F+   +    ++  GE  A  IL  F ++KV  Y + RD PAI GTS +SP
Sbjct: 203 VLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPAIDGTSSISP 262

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+IGV+SPRQC   L  +F ++++   S A +WLNEL WREFYRHL+  +P +     F
Sbjct: 263 YLAIGVISPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNHNF 322

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL K LL+
Sbjct: 323 NRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLI 382

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FDP G+FIR 
Sbjct: 383 DWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIRK 442

Query: 428 WLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +LPEL +   + +H P +    +       ++   YP  IV+H  A    L      KK 
Sbjct: 443 YLPELASWGIKQLHQPSTAQTPSLFEQPLFNIKTAYPSAIVEHSAARARALTVLGVLKKA 502

Query: 481 S 481
           +
Sbjct: 503 A 503


>gi|127512408|ref|YP_001093605.1| deoxyribodipyrimidine photo-lyase [Shewanella loihica PV-4]
 gi|126637703|gb|ABO23346.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella loihica PV-4]
          Length = 478

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/478 (42%), Positives = 281/478 (58%), Gaps = 20/478 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+WLR D R+ DN AL  A      +  A+FIATP QW+QH ++  ++  I   L  +  
Sbjct: 4   LLWLRRDFRLHDNPALSEAVRLRVKQ--ALFIATPAQWQQHDMAPIKADLIRRHLELMAG 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ GI       ++F D +  L  YC    V  L  N + E++E  RDK +   +   
Sbjct: 62  ELAEYGIELVILSATDFSDQVRVLCDYCRDHGVKLLLANSEPELDEQERDKQV---MAAG 118

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----IRLTG 186
           +  + + +  +LPPGS+LN   +M+KV+TPF+KA ++ +    +  +P PA    ++  G
Sbjct: 119 IDLRLWQNDTILPPGSVLNQQGEMFKVFTPFKKAWLKCVAAKGIECVPTPAKSTPVKSIG 178

Query: 187 PV----------TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                       TP +     DYP       +P  EQ    +L  F ++K+  Y E+RD 
Sbjct: 179 DAQAASQLPQQPTPQSSSINLDYPL-VDSGRWPDSEQVMGQLLPHFWQDKLLNYGERRDF 237

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PAI+GTS LSPYL+IG +S R    +L +   +++   + GAF+WLNELIWR+FY+HL+ 
Sbjct: 238 PAIKGTSGLSPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAFTWLNELIWRDFYKHLLF 297

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            YP +  G  F P  E + W  +    QAW +G TG+PI+DAAM+QL   GWMHNRLRMI
Sbjct: 298 HYPELIKGGSFQPKYESLPWPNNEAHFQAWCEGRTGYPIVDAAMKQLRRTGWMHNRLRMI 357

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K LLVDW  GE +FM QL+DGD ++NNGGWQWAASTG D+ PYFRIFNP  Q +
Sbjct: 358 VASFLTKHLLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPITQSQ 417

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +FDP+G FIR +LPEL  VP + IH PH +L     +  YP PIVDHK A    L  Y
Sbjct: 418 KFDPRGEFIRKYLPELREVPDKQIHFPHDYLASQGKAEIYPAPIVDHKAARQRALAFY 475


>gi|330961741|gb|EGH62001.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 481

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/472 (42%), Positives = 278/472 (58%), Gaps = 8/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +L +  +     Q   +D + E L + C Q +V  L+ N +Y INE RRD  ++K L+
Sbjct: 59  EAALGKLNVPLLIRQADTWDKAPEVLSTLCQQFKVEGLYLNEEYGINETRRDLAVQKMLE 118

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S+ D +L  PGSIL      ++V+T F+K     L +A    + +PA +    
Sbjct: 119 EAGVQVNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEA-THPVRMPAAQQALS 177

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +T   +P   + F  P Q +  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 178 ITSDPVPDQVKGFATPSQTLRALWPAGEGEAKRRMDAFADEQISYYKDERDFPAKPGTSQ 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 238 LSAYLAAGVISPRQCLHAALSSNHGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 297

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 298 RAFRPETEALKWRDAPDELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 357

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 358 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 417

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL N+  + IH P S      ++ +YP PIVD  K+    L  + A
Sbjct: 418 IKRWLPELANLNKKQIHDPSSMGGLFGVA-DYPKPIVDLSKSRARALAAFKA 468


>gi|217972489|ref|YP_002357240.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223]
 gi|217497624|gb|ACK45817.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223]
          Length = 499

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/480 (41%), Positives = 284/480 (59%), Gaps = 14/480 (2%)

Query: 11  LVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W R DLR+ DN+AL AAC     +   + A++IATP QW++H ++  Q  FI   +  
Sbjct: 23  LMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQLDFIERHINL 82

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+  GI+F+  Q   F D   ++  YC QQ ++++F   + EINE +RD+     +
Sbjct: 83  LAQGLASLGIIFELIQLDTFADVPAFISDYCQQQGISRVFAGSEPEINEQQRDQAC---I 139

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q  +     ++  LL PG++LN +  MYKV+TPF +   +   +  +  LPVPA    GP
Sbjct: 140 QVGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPLPVPAP--LGP 197

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V     P  F+   +    ++  GE  A  IL  F ++KV  Y + RD P+I GTS +SP
Sbjct: 198 VLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPSIDGTSSISP 257

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+IGV+SPRQC   L  +F ++++   S A +WLNEL WREFYRHL+  +P +     F
Sbjct: 258 YLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNHNF 317

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL K LL+
Sbjct: 318 NRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLI 377

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FDP G+FIR 
Sbjct: 378 DWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIRK 437

Query: 428 WLPELNNVPTQYIHAPH-----SWLDKNDLS-LNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +LPEL +   + +H P      S  D+   +   YP  IV+H  A    L      KK +
Sbjct: 438 YLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARSRALTVLGVLKKAA 497


>gi|117919615|ref|YP_868807.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3]
 gi|117611947|gb|ABK47401.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3]
          Length = 493

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/476 (43%), Positives = 282/476 (59%), Gaps = 21/476 (4%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSH 59
           T A    L+W R DLR+TDN+AL AAC        AK+ A++IATP QW  H ++  Q  
Sbjct: 6   TPAAKHALMWFRQDLRLTDNQALTAACDWVRQAPGAKLRAIYIATPNQWLSHDMAPIQID 65

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI   +  + + L+  GI F+  Q  +F +   +L SYC +  V ++F  R+ EINE +R
Sbjct: 66  FIQRHVNLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINEQKR 125

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D+     L   +     D+  LLPPG++LN +  MYKV+TPF +   +   +  +  L V
Sbjct: 126 DQAC---LDTGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREIAAKRAIFPLAV 182

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQR 234
           PA    GP+ P   P  F   FQ+   +     +  GE  A  IL  F K+KV  Y + R
Sbjct: 183 PAP--LGPMLPEPKPISFKERFQSTSKLTSSEQWAAGEGQAKRILTAFIKQKVQDYKQDR 240

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D PA+ GTS +SPYL++GVLSPRQC   L   F D+++   S   +WLNELIWREFYRHL
Sbjct: 241 DFPALDGTSVISPYLALGVLSPRQCIAALLGRFPDVIVDDTSPGRTWLNELIWREFYRHL 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +  G  F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLR
Sbjct: 301 LVAFPDLSKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLR 360

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL K LL+DWR GE YF   L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q
Sbjct: 361 MVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQ 420

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPH-----SWLDKNDLSLN--YPLPIVDH 463
            ++FDP G+FIR +LPEL +   + +H P+     S  +   L  +  YP  IV+H
Sbjct: 421 SEKFDPDGSFIRKYLPELASWGIKRLHQPNMQKTPSLFEAPMLESDSAYPCAIVEH 476


>gi|330887853|gb|EGH20514.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 482

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/472 (41%), Positives = 278/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S+ D +L  PGSIL  A   ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKAGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S +     + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADLNKKQIHDPAS-IGGLFGAADYPKPIVDLSKSRARALAAFKA 469


>gi|86144852|ref|ZP_01063184.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
 gi|85837751|gb|EAQ55863.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
          Length = 481

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/475 (42%), Positives = 292/475 (61%), Gaps = 25/475 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W+R DLRI DN AL +A  N  +  IAVFI+TP+QW+QH ++  ++ FIY  L Q + 
Sbjct: 4   ILWIRRDLRIHDNPALVSAVENGVS--IAVFISTPQQWQQHHLAPIKADFIYRHLKQFES 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ GI   + + ++F+D    L + C Q   T ++ N + E++E  RDK L   +   
Sbjct: 62  QLAEFGITLLHLKATDFNDQAIQLINLCKQVDATYVYANSEPEVDEQLRDKHL---IASG 118

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV-- 188
           +  K  D   +LP GS+LN   +M+KV+TPF+ A ++ +    +   P P +  TG    
Sbjct: 119 IKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICSPTP-VHSTGSAQA 177

Query: 189 ---------TPSNIPRF-------FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYV 231
                     PS + +        +D+ F   D   +P+ +     ++  F   KV  Y 
Sbjct: 178 GSSETDSLQNPSQLKQSLSGFSGEYDFEFPRTDSERWPLSQDVLESVIPNFLANKVNDYS 237

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
             RDIP+++GTS LSPYL+IG +SPR    +L ++  DLL   +  AFSWLNELIWR+FY
Sbjct: 238 RLRDIPSVKGTSGLSPYLTIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFY 297

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +HLM  +P +  G  F      ++W  D+   +AW +G TG+P++DAAMRQL   GWMHN
Sbjct: 298 KHLMFHHPILVKGANFQQKYNGLDWYHDNPSFKAWCEGRTGYPLVDAAMRQLVETGWMHN 357

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFRIFNP
Sbjct: 358 RLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNP 417

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
             Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN +   Y  PIV+HK+A
Sbjct: 418 ITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNGIDSEYWQPIVEHKEA 472


>gi|329894045|ref|ZP_08270030.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
 gi|328923217|gb|EGG30537.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
          Length = 467

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/468 (41%), Positives = 276/468 (58%), Gaps = 4/468 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL+ AC + +A VIA+F ATP+QWR H ++  +  F++ +L 
Sbjct: 1   MTRHLVWFRQDLRVYDNTALWHACLDPEADVIALFCATPQQWRLHDMAPVRERFLWRNLT 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++ L +  I      C  F+D ++ + + C    VT L+ N +Y +NE +RD+ + + 
Sbjct: 61  ALKERLGELNIPLVVKHCQTFEDCVQDVPTLCEALGVTNLYANCEYPVNEQKRDRAIREA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  +V C    D  + P G +L      Y V++PF++A I+          P P  R   
Sbjct: 121 LADKVSCHWHHDFGIKPLG-LLTKTGNPYTVFSPFKRAWIERWRADPAPIYPAPEPRRCS 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              P +         QA+D  +P GE  A++ L  FC++++ +Y  +RD+PA  GTS+LS
Sbjct: 180 AAVPGS--ELLASDKQAMDQFWPAGEDAAMNRLAHFCEDRIDHYKAKRDLPAEPGTSELS 237

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ GV+SPR C +         + + + G  +W++ELIWR+FY H++  YP V M + 
Sbjct: 238 PYLAAGVISPRVCLDAAIRANRGDIHEGRQGPDTWISELIWRDFYIHILDTYPRVSMNRC 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    EKI W        AW +G TG+PI+DAAMRQL   GWMHNRLRM+ A FL K LL
Sbjct: 298 FRVEGEKIPWRNAPEDFAAWCEGRTGYPIVDAAMRQLVQTGWMHNRLRMLVAMFLTKQLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE +FM  L+DGDL +NNGGWQWAASTG D+ PYFRIFNP  Q ++FD  G FIR
Sbjct: 358 IDWREGERFFMQHLIDGDLGANNGGWQWAASTGTDAAPYFRIFNPITQSQKFDASGAFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            ++PEL  +  + IH P   L +  L+  YP P+V+ K A    L  +
Sbjct: 418 RFVPELRELSDKDIHMPAP-LMRQSLASAYPEPVVELKFARERALAAF 464


>gi|120555269|ref|YP_959620.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8]
 gi|120325118|gb|ABM19433.1| deoxyribodipyrimidine photo-lyase type I [Marinobacter aquaeolei
           VT8]
          Length = 463

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/472 (42%), Positives = 268/472 (56%), Gaps = 13/472 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW RNDLR+ DN AL AAC + +  V A F+ TP+QW +H  SA +  F+      +
Sbjct: 2   TQLVWFRNDLRLADNPALTAACQSGE-PVRACFVVTPQQWLEHDWSAARVRFVLEHANAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
            + L++ G+   +     F D  + L  +C    +  + +N +Y INE RRDK L  RL 
Sbjct: 61  ARELAELGVPLTFLNAERFSDGSDALLQFCKDSDIADVHFNEEYGINERRRDKALRDRLV 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +    + D  + P G IL    + Y V+TPF +     + +      P PA  +   
Sbjct: 121 DFGIRVSKYRDQTVAPVGQILTQQNEPYSVFTPFSRRWRSWIEETRPTLHPRPAA-IGNA 179

Query: 188 VTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           V P         PF+ A +P+ P GE  A   L  F  E+   Y + RD PA+ GTSQLS
Sbjct: 180 VKPEQTDTL-PAPFRDAPEPLVPTGEDAAHEQLEAFLTERAKDYKDNRDFPALDGTSQLS 238

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ GVLS RQC    K+  +        G  +W+NE+ WR+FY H++  YP V MG+ 
Sbjct: 239 PYLANGVLSGRQCLIAAKQSGLS-----GEGVETWINEIAWRDFYIHILYHYPRVSMGRA 293

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F   TE + WN      +AWK+G TG PI+DAAMRQL   GWMHNRLRMITA FL K+L 
Sbjct: 294 FKEETEALAWNTPGEHFEAWKEGRTGIPIVDAAMRQLKATGWMHNRLRMITAMFLTKNLF 353

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE +FM  L+DG LASNNGGWQW+ASTG D+ PYFR+FNP  Q +RFDP+G FIR
Sbjct: 354 IDWRLGEAWFMQNLVDGFLASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPKGEFIR 413

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +W+PEL  +  + IH P        +   YP PIVD K++    + ++ A K
Sbjct: 414 NWVPELAKLDNKRIHDPSR---GGVIPKGYPRPIVDLKESRKEAIARFQALK 462


>gi|304410099|ref|ZP_07391718.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183]
 gi|307302189|ref|ZP_07581947.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175]
 gi|304351508|gb|EFM15907.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183]
 gi|306914227|gb|EFN44648.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175]
          Length = 503

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/480 (41%), Positives = 282/480 (58%), Gaps = 14/480 (2%)

Query: 11  LVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W R DLR+ DN+AL AAC     +   + A++IATP QW++H ++  Q  FI   +  
Sbjct: 28  LMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQLDFIERHINL 87

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+  GI F+  Q   F D   ++  YC QQ ++++F   + EINE +RD+     +
Sbjct: 88  LAQGLASLGITFELIQLDTFADVPAFISDYCQQQGISRVFAGSEPEINEQQRDQAC---I 144

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q  +     ++  LL PG++LN +  MYKV+TPF +   +   +  +  LPVPA    GP
Sbjct: 145 QAGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPLPVPAP--LGP 202

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V     P  F+   +    ++  GE  A  IL  F ++KV  Y + RD PAI GTS +SP
Sbjct: 203 VLTEPKPHLFNNVIKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPAIDGTSSISP 262

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+IGV+SPRQC   L  +F ++++   S A +WLNEL WREFYRHL+  +P +     F
Sbjct: 263 YLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNHNF 322

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL K LL+
Sbjct: 323 NRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLI 382

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FDP G+FIR 
Sbjct: 383 DWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIRK 442

Query: 428 WLPELNNVPTQYIHAPH-----SWLDKNDLS-LNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +LPEL +   + +H        S  D+   +   YP  IV+H  A    L      KK +
Sbjct: 443 YLPELASWGIKQLHQSSTAQTPSLFDQPLFTKTAYPSAIVEHSAARARALTVLGVLKKAA 502


>gi|257482020|ref|ZP_05636061.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330988593|gb|EGH86696.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 482

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S+ D +L  PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S +     + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADLNKKQIHDPAS-IGGLFGAADYPKPIVDLSKSRARALTAFKA 469


>gi|160876317|ref|YP_001555633.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195]
 gi|160861839|gb|ABX50373.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195]
 gi|315268506|gb|ADT95359.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS678]
          Length = 499

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/480 (41%), Positives = 282/480 (58%), Gaps = 14/480 (2%)

Query: 11  LVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W R DLR+ DN+AL AAC     +   + A++IATP QW++H ++  Q  FI   +  
Sbjct: 23  LMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQLDFIERHINL 82

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+  GI F+  Q   F D   ++  YC QQ ++++F   + EINE +RD+     +
Sbjct: 83  LAQGLASLGITFELIQLDTFADVPAFISDYCQQQGISRVFAGSEPEINEQQRDQAC---I 139

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q  +     ++  LL PG++LN +  MYKV+TPF +   +   +  +  LPVPA    GP
Sbjct: 140 QAGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPLPVPAP--LGP 197

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V     P  F+   +    ++  GE  A  IL  F ++KV  Y + RD PAI GTS +SP
Sbjct: 198 VLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFPAIDGTSSISP 257

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+IGV+SPRQC   L  +F ++++   S A +WLNEL WREFYRHL+  +P +     F
Sbjct: 258 YLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVAFPDLSKNYNF 317

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL K LL+
Sbjct: 318 NRQADHVQWRNNQQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKHLLI 377

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE  F  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FDP G+FIR 
Sbjct: 378 DWRWGERNFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFDPDGSFIRK 437

Query: 428 WLPELNNVPTQYIHAPH-----SWLDKNDLS-LNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +LPEL +   + +H P      S  D+   +   YP  IV+H  A    L      KK +
Sbjct: 438 YLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARARALTVLGVLKKAA 497


>gi|289624749|ref|ZP_06457703.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289648378|ref|ZP_06479721.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330868910|gb|EGH03619.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 482

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S+ D +L  PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S +     + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADLNKKQIHDPAS-IGGLFGAADYPKPIVDLSKSRARALAAFKA 469


>gi|213967212|ref|ZP_03395361.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           T1]
 gi|301381052|ref|ZP_07229470.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062191|ref|ZP_07253732.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           K40]
 gi|213928054|gb|EEB61600.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           T1]
          Length = 482

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/472 (41%), Positives = 278/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L + C Q +V  L+ N +Y INE RRD+ +++ +Q
Sbjct: 59  EKALGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQSMQ 118

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S  D +L  PGSIL      ++V+T F+K     L QA  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP   + F  P + +  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S      ++ +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKA 469


>gi|298485692|ref|ZP_07003771.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159718|gb|EFI00760.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 482

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S+ D +L  PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRVATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S     D + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADLNRKQIHDPASIGGLFD-AADYPKPIVDLSKSRARALAAFKA 469


>gi|330969367|gb|EGH69433.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 482

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S+ D +L  PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPQAQAAQS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P   + F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 MKSDAVPEQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S +     + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADMNKKQIHDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469


>gi|66044214|ref|YP_234055.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254921|gb|AAY36017.1| Deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 482

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +K+L +  +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K + 
Sbjct: 59  EKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGINETRRDQAVQKAMG 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  V   S+ D +L  PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPQAQAAQS 178

Query: 188 VTPSNIPR---FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P+    F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDAVPKQVKGFATPSKALRDLWPAGEAEARRRMDAFAAEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S +     + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADMNKKQIHDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469


>gi|302130079|ref|ZP_07256069.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 482

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/472 (41%), Positives = 278/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K++ +  +     +   +D + E L + C Q +V  L+ N +Y INE RRD+ +++ +Q
Sbjct: 59  EKAIGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQSMQ 118

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S  D +L  PGSIL      ++V+T F+K     L QA  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP   + F  P + +  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S      ++ +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKA 469


>gi|148975313|ref|ZP_01812237.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium
           SWAT-3]
 gi|145965237|gb|EDK30487.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium
           SWAT-3]
          Length = 471

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/464 (41%), Positives = 292/464 (62%), Gaps = 13/464 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W+R DLRI DN AL +A  N  +  IAVFI+TP++W QH ++  ++ FI+  L Q++ 
Sbjct: 4   ILWIRRDLRIHDNPALVSAIENGVS--IAVFISTPQKWHQHHLAPIKADFIFRHLKQLEA 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  GI   + + ++FDD  + L     Q     +F N + E++E  RD+ L   +   
Sbjct: 62  ELADLGITLLHLKATDFDDQSKQLTELYQQLGSQAVFANSEPEVDEQARDQQL---ISSG 118

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGPV 188
           +  +  D  V+LP GS+LN   +M+KV+TPF+ A ++ +    ++  P  + +      +
Sbjct: 119 INLQISDCDVMLPLGSVLNQQGEMFKVFTPFKNAWLKEVQAKGIQCSPAVLTSKNNAKAL 178

Query: 189 TPSNIPRF-----FDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            P+N+        +D+ F  +D   +P+ +    +++  F   KV  Y   RDIP+++GT
Sbjct: 179 LPNNLQTLQLASDYDFDFPHVDSSRWPLSQDVLGNVIPNFLANKVNDYAHLRDIPSVKGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL+IG +SPR    +L ++  DLL   +  AFSWLNELIWR+FY+HLM  +P + 
Sbjct: 239 SGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFYKHLMFHHPKLV 298

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G  F      ++W +D    +AW +G TG+P++DAAMRQL   GWMHNRLRM+ ASFL 
Sbjct: 299 KGANFQQKYNGLDWYQDHPNFKAWCEGKTGYPLVDAAMRQLVDTGWMHNRLRMVVASFLT 358

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE +FM  L+DGD ++NNGGWQWA+STG D+ PYFRIFNP  Q ++FDP+G
Sbjct: 359 KHLLIDWRWGERFFMDHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNPITQSEKFDPKG 418

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
            FIR ++PEL N+P +++H PH ++ KN ++  Y  PIV+HK+A
Sbjct: 419 IFIRKYIPELKNIPDKHVHFPHDYIAKNGINSEYWQPIVEHKEA 462


>gi|331008878|gb|EGH88934.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 482

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S+ D +L  PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSPPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S +     + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADLNKKQIHDPAS-IGGLFGAADYPKPIVDLSKSRARALTAFKA 469


>gi|218677191|ref|YP_002396010.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
 gi|218325459|emb|CAV27611.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
          Length = 486

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/479 (41%), Positives = 290/479 (60%), Gaps = 28/479 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W+R DLRI DN AL +A  N  +  IAVFI+TP+QW+QH ++  ++ FIY  L Q + 
Sbjct: 4   ILWIRRDLRIHDNPALVSAVENGAS--IAVFISTPQQWQQHHLAPIKADFIYRHLKQFES 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ GI   + + ++F+D    L + C Q   T ++ N + E++E  RDK L   +   
Sbjct: 62  QLAEFGITLLHLKATDFNDQASQLINLCKQVDATCVYANSEPEVDEQLRDKRL---IATG 118

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL---------------VQADLR 175
           +  K  D   +LP GS+LN   +M+KV+TPF+ A ++ +                 A   
Sbjct: 119 IKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICSHAPVHSTGSAQAG 178

Query: 176 SLPVPAIRLTGPVTP-------SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKV 227
           S    +++   P  P       S     +D+ F   D   +P+ +     ++  F   KV
Sbjct: 179 SSETDSLQNLSPQNPTPLNQSLSGFSGEYDFDFPRTDSERWPLSQDVLESVIPNFLANKV 238

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y   RDIP+I+GTS LSPYL+IG +SPR    +L ++  DLL   +  AFSWLNELIW
Sbjct: 239 NDYSRLRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIW 298

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+FY+HLM  +P +  G  F      ++W  D+   +AW +G TG+P++DAAMRQL   G
Sbjct: 299 RDFYKHLMFHHPILVKGANFQQKYNGLDWYHDNPSFKAWCEGKTGYPLVDAAMRQLVETG 358

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNRLRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFR
Sbjct: 359 WMHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFR 418

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           IFNP  Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN +   Y  PIV+HK+A
Sbjct: 419 IFNPITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNGIDSEYWQPIVEHKEA 477


>gi|71280055|ref|YP_268123.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H]
 gi|71145795|gb|AAZ26268.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H]
          Length = 470

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/464 (43%), Positives = 281/464 (60%), Gaps = 13/464 (2%)

Query: 11  LVWLRNDLRITDNKALY-------AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           L+WLRNDLR  DN AL+        + H+S     A+F    +QW+QH  S  +  FI  
Sbjct: 2   LLWLRNDLRTHDNPALHYFLSRNALSQHDSAVPAKAIFFICEQQWQQHDWSPIKIDFIKR 61

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
               + K L+   I  +  +  NF     +L SYC    +T++  N + E NE +RDK L
Sbjct: 62  HAHALVKELALLNIELELIELDNFTQQKTYLHSYCQLHNITEVVANSEVEFNEQQRDKAL 121

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
              L+   I     +  V++P G +LN +  MYKV+TPF++A +  + Q     L   ++
Sbjct: 122 YLELKASGIPLTLLEADVIVPKGKVLNQSGIMYKVFTPFKRAWLTYIQQGGFEYLGKVSV 181

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           + +      N     +    +I   +P+       IL KF ++K+  Y   RDIP+I+GT
Sbjct: 182 KSSAVNKADNQ----EEDQGSISSTWPLATVFEQQILPKFYQQKISTYKLNRDIPSIKGT 237

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S +SPYL+ GV+SPR     L  +  DLL+   S  FSWLNE+IWREFYRHL+     +C
Sbjct: 238 SGISPYLAAGVISPRFVLRLLLNKHPDLLVASDSEEFSWLNEIIWREFYRHLLFHEQRLC 297

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + +    +++ W+ D+ L  AW QG TG+P++DAAMRQLN  GWMHNRLRM+ ASFL 
Sbjct: 298 KHQCYKENYQEMLWHNDAALFDAWCQGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFLT 357

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR+GE+YFM  L+DGDLASNNGGWQWAASTG D+ PYFRIFNP  Q +RFDP+G
Sbjct: 358 KHLLIDWRLGEKYFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIRQSERFDPKG 417

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
            FIR ++PELNN+  + IH PH ++  N+L++ +P  IV+HK+A
Sbjct: 418 VFIRKYIPELNNISDKAIHFPHQYIKDNELNIYWP-AIVEHKEA 460


>gi|320325702|gb|EFW81763.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327379|gb|EFW83393.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881872|gb|EGH16021.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 482

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q ++  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S+ D +L  PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S +     + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADLNKKQIHDPAS-IGGLFGAADYPKPIVDLSKSRARALAAFKA 469


>gi|146306105|ref|YP_001186570.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
           ymp]
 gi|145574306|gb|ABP83838.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
           ymp]
          Length = 477

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/469 (42%), Positives = 272/469 (57%), Gaps = 7/469 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R+DLRI DN AL  A   S    IA+++ TP QW++H  +  +  F   +L  + 
Sbjct: 3   QLMWFRSDLRIDDNTALSQAM--SRGSTIALYLVTPGQWQRHDDAPCKVDFWLRNLAHLS 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           ++L+   +     QC +++ +   +   C Q  V  +  N +Y INE  RD+ +   L Q
Sbjct: 61  RALAALNVPLLIRQCEDWNQAPAVIAEVCHQHNVCAVHANEEYGINENLRDRCVAAYLAQ 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   S  D +L  PGSIL  +   ++VY+ FRK   ++L  A    +  P  +   P+
Sbjct: 121 QDIAWHSHLDQLLFKPGSILTRSGGYFQVYSQFRKVCYEHLHMALPGLVARPVAQAPTPL 180

Query: 189 TPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               IP   D    P + +  ++P GE+ A   L +F  E++ YY ++RD PA+ GTSQL
Sbjct: 181 ASDAIPHAVDGFAMPSEQLRSLWPAGEEAARQRLERFADEQIGYYKDERDFPALPGTSQL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ GVLSPRQC +              +G  +W+NEL+WREFY+H++  YP V   +
Sbjct: 241 SPYLAAGVLSPRQCLHAALAANRGEFDSGNAGVVTWVNELLWREFYKHILVGYPRVSRHR 300

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P TE + W +    L AW+QG TG PIIDAAMRQL   GWMHNRLRMI A FL K+L
Sbjct: 301 AFRPETEAVAWRRAPEELAAWQQGRTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTKNL 360

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP  Q ++FD +G FI
Sbjct: 361 LIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPISQSQKFDSEGRFI 420

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           RHWLPEL  +  + IH P S L        YP PIVD  ++    L  +
Sbjct: 421 RHWLPELAGLNKRDIHDPAS-LGGLFAPAGYPRPIVDLSRSRERALAAF 468


>gi|330873295|gb|EGH07444.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 482

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/472 (41%), Positives = 278/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAALQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L S C Q +V  L  N +Y INE RRD+ +++ +Q
Sbjct: 59  EKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQAMQ 118

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S  D +L  PGSIL      ++V+T F+K     L +A  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTVHTPEAQQPLS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP   + F  P +++  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADEQISYYKDERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ W+PEL ++  + IH P S      ++ +YP PIVD  K+    L  + A
Sbjct: 419 IKRWMPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKA 469


>gi|330941669|gb|EGH44445.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 482

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/472 (41%), Positives = 276/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +  ++D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S+ D +L  PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P   + F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDAVPDQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S +     + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADMNKKQIHDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469


>gi|28868336|ref|NP_790955.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28851573|gb|AAO54650.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331018110|gb|EGH98166.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 482

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L + C Q +V  L  N +Y INE RRD+ +++ +Q
Sbjct: 59  EKALGKLNVPLLIREADTWDQAPEVLATLCKQFKVEGLHLNEEYGINETRRDQAVQQSMQ 118

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S  D +L  PGSIL      ++V+T F+K     L QA  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP   + F  P + +  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S      ++ +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKA 469


>gi|289678393|ref|ZP_06499283.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
           FF5]
          Length = 482

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/475 (41%), Positives = 278/475 (58%), Gaps = 13/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +  ++D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PA 181
              +   S+ D +L  PGSIL      ++V+T F+K     L +A     PV      PA
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEA--MPYPVRTPKAQPA 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +   V P  + + F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  G
Sbjct: 177 QSIKSDVVPDQV-KGFAMPSKALRDLWPAGEAEARRRMDTFADEQISYYKTERDFPAKPG 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V
Sbjct: 236 TSQLSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRV 295

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL
Sbjct: 296 SRHRAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFL 355

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+
Sbjct: 356 TKNLLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPE 415

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           G FI+ WLPEL ++  + IH P S +     + +YP PIVD  K+    L  + A
Sbjct: 416 GVFIKRWLPELADMNKKQIHDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469


>gi|71733434|ref|YP_273281.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71553987|gb|AAZ33198.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 482

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/472 (41%), Positives = 276/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +   +D + E L + C Q ++  L  N++Y INE RRD+ ++K L+
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGINETRRDQAVQKALE 118

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S+ D +L  PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   +IP     F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DW  GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWHEGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S +     + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADLNKKQIHDPAS-IGGLFGAADYPKPIVDLSKSRARALAAFKA 469


>gi|327480577|gb|AEA83887.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri DSM 4166]
          Length = 476

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/474 (41%), Positives = 282/474 (59%), Gaps = 15/474 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+WLR+DLR +DN AL +A   +    +AV++ TP QW  H  +A +  F   +L+++
Sbjct: 2   TQLIWLRSDLRTSDNTALASAM--AAGPTVAVYLITPGQWLAHDDAACKVDFWLRNLVEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L    +        ++  + + L   C +  V +L YN +Y +NE RRD+ +  RL+
Sbjct: 60  AGRLQALNVPLLIRDAEDWQAAPDALLKLCQELAVQRLHYNDEYGVNEQRRDQAVAARLR 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----IR 183
              I  + + D +L  PGS+L  +   +KV+  FR+A +  L  +    +  PA    + 
Sbjct: 120 AAGIDVRGYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPACVAPPAPQQPMT 179

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +T  V P  + R FD P   +  ++P GE  A H L  F ++ ++ Y ++RD+PA  GTS
Sbjct: 180 VTSDVPPDEV-RGFDRPSDYLRTLWPAGETFAQHRLAAFIEDDLHQYHQRRDLPAEPGTS 238

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS YL+ GV+S RQC +         L    +GA +W+NEL+WREFY+H++  YP V M
Sbjct: 239 QLSAYLAAGVISIRQCLHAAVASNRGELDSGSAGATTWINELLWREFYKHILVGYPRVSM 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F   TE + W + +  LQAW++G TGFPIIDAAMRQL   GWMHNRLRM+TA FL K
Sbjct: 299 HRAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRMVTAMFLSK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DSVPYFR+FNP  Q +RFDP G 
Sbjct: 359 NLLIDWREGERWFMRNLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQRFDPDGQ 418

Query: 424 FIRHWLPELNNVPTQYIHAP---HSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           F+R WLPEL  +  + IH P    S   K D    YP PI+D  ++    L+ +
Sbjct: 419 FLRRWLPELQGLGKREIHNPSAQRSLFGKAD----YPAPIIDLGESRARALDAF 468


>gi|302185909|ref|ZP_07262582.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
           642]
          Length = 482

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/472 (40%), Positives = 276/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++L +  +     +   +D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EQALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S+ D +L  PGSIL      ++V+T F+K     + +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRMHEAMPHPIRTPKAQPAQS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P   + F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDTVPDQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S +     + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADMNKKQIHNP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469


>gi|254786801|ref|YP_003074230.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
 gi|237686103|gb|ACR13367.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
          Length = 465

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/463 (42%), Positives = 273/463 (58%), Gaps = 7/463 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L+W R DLR+ DN AL A+         AV+      W +H +S  +   I   L ++
Sbjct: 1   MNLMWFRADLRVADNPALCASMQA--GPTAAVYTLCEATWSEHRLSPAKISLICRQLEKL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +L+   +      CSNF      L S+  +  ++ +++N ++EINE    K +   LQ
Sbjct: 59  ESALAALHVPLIIIPCSNFKRVPGELKSFAAKHNISAVYFNHEFEINERLLSKRVIAELQ 118

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   SF+D   + PG +   +   YKV+TPF+K  +           P P  +   P+
Sbjct: 119 PHIDTWSFNDQCAIAPGKLKTGSDDWYKVFTPFKKRYLAEFSSMARAVYPTPKAQKKIPI 178

Query: 189 TPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           T S  P      F++    ++P GE  A   L +F K+ +  Y E RD PA+ GTS LSP
Sbjct: 179 TSSIAP-LQQVQFESCWQNLWPAGEDEAHRRLHRFGKDGMSRYHEDRDFPAVDGTSTLSP 237

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL++G +S RQC +   ++      +   GA +WL+EL+WR+FYRHL+  YP +C  K F
Sbjct: 238 YLAVGAISTRQCMDAAIQQGGMENDQSTQGAQTWLSELVWRDFYRHLLYGYPDLCKFKAF 297

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
              TE++ W  DS LL AW++G TGFPI+DAAM+QL   GWMHNRLRMITA FL K L V
Sbjct: 298 QQNTERLPWRHDSRLLTAWQEGRTGFPIVDAAMKQLVQTGWMHNRLRMITAMFLTKHLFV 357

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE++FM  L+DGDLASNNGGWQW+ASTG D+ PYFRIFNPT Q +RFDP G FIRH
Sbjct: 358 DWRLGEDFFMQHLVDGDLASNNGGWQWSASTGVDAAPYFRIFNPTRQSERFDPNGEFIRH 417

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           +LPEL N+  + IH+P S ++    S  YP PIVDH  A   T
Sbjct: 418 YLPELKNLSNKAIHSP-SVIEAE--SCGYPKPIVDHSTAVKQT 457


>gi|84386253|ref|ZP_00989282.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
 gi|84379023|gb|EAP95877.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
          Length = 481

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/474 (41%), Positives = 285/474 (60%), Gaps = 23/474 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W+R DLRI DN AL AA  N      AVFI+TP+QW+QH ++  ++  IY  L Q++ 
Sbjct: 4   ILWIRRDLRIHDNPALVAAVEN--GVTTAVFISTPQQWQQHHLAPIKADLIYRHLQQLES 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ GI   + +  +FDD    L     Q   T ++ N + E++E  RDK L   +   
Sbjct: 62  QLAEFGIDLLHLKARDFDDQAVQLTHLYKQLDATCIYANSEPEVDEQLRDKRL---IASG 118

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-------- 182
           +  K  D   +LP GS+LN   +M+KV+TPF+ A ++ +    +   P P          
Sbjct: 119 IKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQVKGIICSPAPVAPAKLQQTP 178

Query: 183 ---------RLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVE 232
                    +L+       I   +D+ F  +D   +P+ +     ++  F   KV  Y  
Sbjct: 179 LQQTQRPQSQLSDDSKALRISADYDFDFPRVDSSRWPLSQDVLESVIPNFLSNKVNDYSR 238

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RDIP+I+GTS LSPYL+IG +SPR    +L ++  DLL   +  AFSWLNELIWR+FY+
Sbjct: 239 LRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFYK 298

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HLM  +P +  G  F      ++W  D+   +AW +G TG+P++DAAMRQL   GWMHNR
Sbjct: 299 HLMFHHPKLVKGANFQQKYNGLDWYHDNPSFKAWCEGKTGYPLVDAAMRQLVETGWMHNR 358

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFRIFNP 
Sbjct: 359 LRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNPI 418

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
            Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN +   Y  PIV+HK+A
Sbjct: 419 TQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNRIDSEYWQPIVEHKEA 472


>gi|330964968|gb|EGH65228.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 482

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/472 (41%), Positives = 277/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAALQR--GPTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L S C Q +V  L  N +Y INE RRD+ +++ +Q
Sbjct: 59  EKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQAMQ 118

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S  D +L  PGSIL      ++V+T F+K     L +A  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTVHTPEAQQPLS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP   + F  P +++  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADEQISYYKDERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL  GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLVAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ W+PEL ++  + IH P S      ++ +YP PIVD  K+    L  + A
Sbjct: 419 IKRWMPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKA 469


>gi|330975589|gb|EGH75655.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 482

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/472 (41%), Positives = 275/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +  ++D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGALNVPLLIREADSWDQAPEVLAKLCAQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S+ D +L  PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P   + F  P + +  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDAVPDQVKGFATPSKTLRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S +     + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADMNKKQIHDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469


>gi|114046742|ref|YP_737292.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7]
 gi|113888184|gb|ABI42235.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7]
          Length = 493

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/469 (43%), Positives = 280/469 (59%), Gaps = 21/469 (4%)

Query: 11  LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           L+W R DLR+TDN+AL AAC        AK+ A++IATP QW  H ++  Q  FI   + 
Sbjct: 13  LMWFRQDLRLTDNQALTAACDWVRQAPGAKLRAIYIATPSQWLSHDMAPIQIDFIQRHVN 72

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+  GI F+  Q  +F +   +L SYC +  V ++F  R+ EINE +RD+     
Sbjct: 73  LLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINEQKRDQAC--- 129

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   +     D+  LLPPG++LN +  MYKV+TPF +   +   +  +  L VPA    G
Sbjct: 130 LDAGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREVAAKRAILPLAVPAP--LG 187

Query: 187 PVTPSNIPRFFD--YPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           P+ P   P  F   +PF +       +  GE  A  IL  F ++K   Y + RD PA++G
Sbjct: 188 PMLPEPKPISFKERFPFTSKLTSSEQWAAGEGQAKRILTAFIQQKAQDYKQDRDFPALEG 247

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS +SPYL++GVLSPRQC   L   F ++++   S   +WLNELIWREFYRHL+  +P +
Sbjct: 248 TSVISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVAFPDL 307

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G  F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL
Sbjct: 308 SKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVASFL 367

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+DWR GE YF   L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FDP 
Sbjct: 368 TKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPD 427

Query: 422 GTFIRHWLPELNNVPTQYIHAPH-----SWLDKNDLSLN--YPLPIVDH 463
           G+FIR +LPEL +   + +H P+     S  +   L  +  YP  IV+H
Sbjct: 428 GSFIRKYLPELASWGIKRLHQPNMQKTPSLFEVQMLESDSAYPCAIVEH 476


>gi|330900868|gb|EGH32287.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 482

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/472 (41%), Positives = 274/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +  ++D + E L   C Q +V  L  N++Y INE RRD+ + K ++
Sbjct: 59  EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVHKAME 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S+ D +L  PGSIL      ++V+T F+K     L +A   ++  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHTVRTPKAQPAQS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP   + F  P  A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDAIPDQAKGFATPSIALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE + W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALNWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + IH P S +     + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADMNKKQIHDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 469


>gi|119473269|ref|ZP_01614930.1| putative deoxyribodipyrimidine photolyase [Alteromonadales
           bacterium TW-7]
 gi|119444513|gb|EAW25832.1| putative deoxyribodipyrimidine photolyase [Alteromonadales
           bacterium TW-7]
          Length = 464

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/466 (41%), Positives = 272/466 (58%), Gaps = 9/466 (1%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+  N+AL  A +N      A+F    +QW+QH  +  Q   +   +  +Q+
Sbjct: 4   LFWFRRDLRLFSNEALIEALNNGAKH--AIFFVCEKQWQQHQAAPIQIDLLKRRVTYLQE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  GI        +F D    L S+C    +  +  N +YE+NEV RDK +  +   R
Sbjct: 62  QLANFGITLNVINAPSFSDCESELLSFCETHDIQHIIANTEYELNEVNRDKAVLAQCDKR 121

Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  + ++  ++ P GSI N + +MYKV+TPF++A ++            P  +      
Sbjct: 122 SITFTLYEGDLIAPVGSIKNQSNEMYKVFTPFKRAWLKQYQDTHFSLAQWPQEQ-----N 176

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
           P  I +            +P+ ++  L ++  F  +K+  Y +QRDIP+I+GTS LSPYL
Sbjct: 177 PIKIEKSQHLESDGSSDKWPVDDETLLSVVDNFICDKLTSYDDQRDIPSIKGTSGLSPYL 236

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           ++G++SP+Q    +++ + D+L   KS  F+W+NELIWREFYRHL+A YP +  G+ F  
Sbjct: 237 ALGIVSPKQLLINIQQRYPDILTTSKSKTFTWVNELIWREFYRHLIAEYPKLSRGENFNE 296

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
               +EW K      AW +G TG+P++DAAM QL   GWMHNRLRM+ ASFL K LL+DW
Sbjct: 297 KYNPVEWRKSEKEFNAWCEGRTGYPLVDAAMLQLKQTGWMHNRLRMVVASFLTKHLLIDW 356

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE +FM  L+DGDLASNNGGWQWAASTG D+ PYFRIFNP  Q +RFDP G FIR +L
Sbjct: 357 REGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPITQSERFDPTGKFIRKYL 416

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLP-IVDHKKACHHTLNQY 474
           PEL NVP ++IH PH++L           P IVDHK A    L  +
Sbjct: 417 PELENVPDKHIHFPHTYLAATGKGSECYWPAIVDHKAARERALAAF 462


>gi|104780105|ref|YP_606603.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Pseudomonas entomophila L48]
 gi|95109092|emb|CAK13789.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Pseudomonas entomophila L48]
          Length = 484

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/477 (42%), Positives = 280/477 (58%), Gaps = 17/477 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLRI DN AL AAC    A  +A++IA+P QW++H  +A +  F   +L  +
Sbjct: 1   MQLIWLRSDLRIDDNTALSAACQGGPA--VALWIASPGQWQRHDDAACKVDFWLRNLRLL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
            ++L    I         + +  + L   C + ++  + +N +Y +NE  RD      L 
Sbjct: 59  SQALEALNIPLLVRTTDTWREVPQVLLEACREHQIGTVHWNEEYGVNETLRDSAARALLE 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LT 185
           Q  V   +  D +L  PGS+L    Q ++V++ F++  +++L     RSLP  A R    
Sbjct: 119 QSGVATHTHLDQLLFKPGSVLTRGGQYFQVFSQFKRVCLEHL----HRSLPARAQRPKRQ 174

Query: 186 GPVTPSNIP-----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            P+  ++ P       F  P Q++   +P GE+ A   L +F  E V  Y + RD+PA  
Sbjct: 175 APLDIASDPIPEQIDGFAIPPQSLRDHWPAGEEEAQRRLSRFIDETVEDYPQLRDLPAKA 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYL+ GV+SPRQC +              +G  +W+NEL+WREFY+H++  YP 
Sbjct: 235 GTSQLSPYLAAGVISPRQCLHAALASNHGEFDSGNAGVQTWVNELLWREFYKHILVGYPQ 294

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   + F   TE + W      L+AWKQG TGFPIIDAAMRQL   GWMHNRLRMI A F
Sbjct: 295 VSRHRAFRVHTEALPWRNAPDDLEAWKQGRTGFPIIDAAMRQLLETGWMHNRLRMIVAMF 354

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNPT Q +RFDP
Sbjct: 355 LSKNLLIDWREGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPTTQSQRFDP 414

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQY 474
           +GTFIR WLPEL  +  + IH P    D    N+ S NY  PIVD   +    L+ +
Sbjct: 415 KGTFIRQWLPELQAMDEKTIHRPVKSADLFVTNNYSSNYTSPIVDLDSSRQRALDAF 471


>gi|91794189|ref|YP_563840.1| deoxyribodipyrimidine photolyase [Shewanella denitrificans OS217]
 gi|91716191|gb|ABE56117.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella denitrificans
           OS217]
          Length = 497

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/485 (42%), Positives = 278/485 (57%), Gaps = 22/485 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W RNDLR+ DN AL AAC  +     KV AV++ TP+QW+ H ++  Q  FI   L  
Sbjct: 18  LMWFRNDLRLGDNPALNAACEYAGVHGGKVRAVYLVTPKQWQHHHVAPMQIDFIRRHLEL 77

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL   GI         FDD+   L  Y  + ++  +F  ++ EINE RRD  L   +
Sbjct: 78  LARSLGALGIPLDVLYGQVFDDTAALLVDYVNEHQIGAIFAGKEPEINEQRRDNAL---I 134

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +         LL PG++LN +  MYKV+TPF K   Q  + A ++ LPVP     G 
Sbjct: 135 ASGLNLTLLQQDCLLAPGAVLNLSGDMYKVFTPFSKKWKQ--IAASMQILPVPVPAPVGS 192

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                 P  FD P ++ +  +  GE  A  IL +F  + V  Y   RD PA +GTS+LSP
Sbjct: 193 AITQIAPIVFDCPMRSSE-AWQAGEGAAKRILERFLNQNVAEYQVLRDFPAEEGTSRLSP 251

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL++G++SP+QC   + + F + L+   S A +WLNEL+WREFYRHL+  +P + MG  F
Sbjct: 252 YLALGIISPKQCVAAILQRFPEALVDYTSPAKTWLNELMWREFYRHLLVAFPRLSMGHNF 311

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + I+W  D     AW +G TG+P++DAAMRQLN  GWMHNRLRM+ ASFL K LL+
Sbjct: 312 NALGDGIKWRNDKAEFNAWCEGRTGYPLVDAAMRQLNQTGWMHNRLRMLVASFLTKHLLI 371

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF  QL+DGDLA+NNGGWQW+A TG D+ PYFR+F+P  Q  +FD    FI+ 
Sbjct: 372 DWRWGEQYFRQQLIDGDLAANNGGWQWSAGTGCDAQPYFRVFSPLSQSAKFDSDCEFIKR 431

Query: 428 WLPELNNVPTQYIH----APHSWLDKNDL---------SLNYPLPIVDHKKACHHTLNQY 474
           ++PEL+ V  + IH    +      K DL         S  YP PIV+H  A    +   
Sbjct: 432 FVPELSEVSNKAIHEIKCSAAYEAAKVDLFAPPELEGKSATYPAPIVEHSFARKRAIEVL 491

Query: 475 YAAKK 479
            A KK
Sbjct: 492 SALKK 496


>gi|107099673|ref|ZP_01363591.1| hypothetical protein PaerPA_01000691 [Pseudomonas aeruginosa PACS2]
 gi|254244448|ref|ZP_04937770.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192]
 gi|126197826|gb|EAZ61889.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192]
          Length = 481

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/481 (41%), Positives = 281/481 (58%), Gaps = 22/481 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
             + ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +
Sbjct: 2   NGLPMNLIWFRCDLRTTDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRN 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L+   I      C ++  + E +   C +  V  +  N++Y +NE RRD+ + 
Sbjct: 60  LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +RL+ + +   S  D +   PGS+L      ++V++ FRK   + L QA      +P +R
Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVR 173

Query: 184 ----------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                     L     P  +P  F  P  ++  ++P GE+ A   LR F  + +  Y E+
Sbjct: 174 PRPQPQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA+ GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H
Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKH 292

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  YP V   +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRL
Sbjct: 293 ILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRL 352

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+ A FL K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  
Sbjct: 353 RMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLS 412

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q +RFDP+G FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  
Sbjct: 413 QSERFDPRGEFIRHWLPELAGLERKAIHDPSSL--GLFAGVDYPRPMVDLKASRERALAA 470

Query: 474 Y 474
           +
Sbjct: 471 F 471


>gi|113969509|ref|YP_733302.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4]
 gi|113884193|gb|ABI38245.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4]
          Length = 493

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/469 (43%), Positives = 280/469 (59%), Gaps = 21/469 (4%)

Query: 11  LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           L+W R DLR+TDN+AL AAC        AK+ A++IATP QW  H ++  Q  FI   + 
Sbjct: 13  LMWFRQDLRLTDNQALTAACDWVRQVPGAKLRAIYIATPSQWLSHDMAPIQIDFIQRHVN 72

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+  GI F+  Q  +F +   +L SYC +  V ++F  R+ EINE +RD+     
Sbjct: 73  LLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINEQKRDQAC--- 129

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   +     D+  LLPPG++LN +  MYKV+TPF +   +   +  +  L VPA    G
Sbjct: 130 LDVGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREVAAKRAILPLAVPAP--LG 187

Query: 187 PVTPSNIPRFFD--YPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           P+ P   P  F   +PF +       +  GE  A  IL  F ++K   Y + RD PA++G
Sbjct: 188 PMLPEPKPISFKERFPFTSKLTSSEQWAAGEGQAKRILTAFIQQKAQDYKQDRDFPALEG 247

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS +SPYL++GVLSPRQC   L   F ++++   S   +WLNELIWREFYRHL+  +P +
Sbjct: 248 TSVISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVAFPDL 307

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G  F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL
Sbjct: 308 SKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVASFL 367

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+DWR GE YF   L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FDP 
Sbjct: 368 TKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFDPD 427

Query: 422 GTFIRHWLPELNNVPTQYIHAPH-----SWLDKNDLSLN--YPLPIVDH 463
           G+FIR +LPEL +   + +H P+     S  +   L  +  YP  IV+H
Sbjct: 428 GSFIRKYLPELASWGIKRLHQPNMQKTPSLFEVPTLESDSAYPYAIVEH 476


>gi|296391481|ref|ZP_06880956.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAb1]
          Length = 481

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/481 (40%), Positives = 281/481 (58%), Gaps = 22/481 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
             + ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +
Sbjct: 2   NGLPMNLIWFRCDLRTTDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRN 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L+   I      C ++  + E +   C +  +  +  N++Y +NE RRD+ + 
Sbjct: 60  LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVG 119

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +RL+ + +   S  D +   PGS+L      ++V++ FRK   + L QA      +P +R
Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVR 173

Query: 184 ----------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                     L     P  +P  F  P  ++  ++P GE+ A   LR F  + +  Y E+
Sbjct: 174 PRPQPQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA+ GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H
Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKH 292

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  YP V   +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRL
Sbjct: 293 ILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRL 352

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+ A FL K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  
Sbjct: 353 RMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLS 412

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q +RFDP+G FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  
Sbjct: 413 QSERFDPRGEFIRHWLPELAGLERKAIHDPSSL--GLFAGVDYPRPMVDLKASRERALAA 470

Query: 474 Y 474
           +
Sbjct: 471 F 471


>gi|116052805|ref|YP_793122.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588026|gb|ABJ14041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 481

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/481 (40%), Positives = 281/481 (58%), Gaps = 22/481 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
             + ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +
Sbjct: 2   NGLPMNLIWFRCDLRTTDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRN 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L+   I      C ++  + E +   C +  +  +  N++Y +NE RRD+ + 
Sbjct: 60  LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVG 119

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +RL+ + +   S  D +   PGS+L      ++V++ FRK   + L QA      +P +R
Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVR 173

Query: 184 ----------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                     L     P  +P  F  P  ++  ++P GE+ A   LR F  + +  Y E+
Sbjct: 174 PRPQPQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEEVAQERLRGFADQHLADYHER 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA+ GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H
Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKH 292

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  YP V   +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRL
Sbjct: 293 ILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRL 352

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+ A FL K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  
Sbjct: 353 RMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLS 412

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q +RFDP+G FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  
Sbjct: 413 QSERFDPRGEFIRHWLPELAGLERKAIHDPSSL--GLFAGVDYPRPMVDLKASRERALAA 470

Query: 474 Y 474
           +
Sbjct: 471 F 471


>gi|15599855|ref|NP_253349.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1]
 gi|9950915|gb|AAG08047.1|AE004880_3 deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1]
          Length = 481

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/481 (41%), Positives = 281/481 (58%), Gaps = 22/481 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
             + ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +
Sbjct: 2   NGLPMNLIWFRCDLRTTDNSALLAAADGR--PCLALYLLSPAQWREHDDAPCKVDFWLRN 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L+   I      C ++  + E +   C +  V  +  N++Y +NE RRD+ + 
Sbjct: 60  LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +RL+ + +   S  D +   PGS+L      ++V++ FRK   + L QA      +P +R
Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVR 173

Query: 184 ----------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                     L     P  +P  F  P  ++  ++P GE+ A   LR F  + +  Y E+
Sbjct: 174 PRPQPQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA+ GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H
Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKH 292

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  YP V   +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRL
Sbjct: 293 ILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRL 352

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+ A FL K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  
Sbjct: 353 RMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLS 412

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q +RFDP+G FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  
Sbjct: 413 QSERFDPRGEFIRHWLPELAGLERKAIHDPSSL--GLFAGVDYPRPMVDLKASRERALAA 470

Query: 474 Y 474
           +
Sbjct: 471 F 471


>gi|325273235|ref|ZP_08139517.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51]
 gi|324101641|gb|EGB99205.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51]
          Length = 473

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/478 (42%), Positives = 284/478 (59%), Gaps = 23/478 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL AA        +A+++ +P QWR H  +  +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSAATER--GPTVALWLVSPGQWRAHDDADCKVDFWLRNLRDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++L +  I     +   +D + + +   C Q +V  + +N +Y INE RRD    K L+
Sbjct: 59  RQALEKLNIPLLIRKIDTWDQAPQAVLDVCQQHQVQSVHWNEEYGINEQRRDAATRKLLE 118

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--- 184
              V   S+ D +L  PG+IL  +   ++V++ F+K  +++L     RSLP  A R+   
Sbjct: 119 KASVQAHSYLDQLLFRPGTILTRSGDYFQVFSQFKKTCLEHL----HRSLPALARRVKRQ 174

Query: 185 ------TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                 + P+ P +I  F   P +A+   +P GE +A   L +F  E +  Y++ RD+PA
Sbjct: 175 AALKIHSDPI-PQDIDGFEKTP-RALREHWPAGEAHAQQRLSQFLDETIDDYLKTRDLPA 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTSQLSPYL+ GV+SPRQC +              +G  +W+NEL+WREFY+H++  Y
Sbjct: 233 MPGTSQLSPYLAAGVISPRQCLHGALAANKGEFDSGSTGVQTWVNELLWREFYKHILTGY 292

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V   + F   TE + W      L+AW+QG TGFPIIDAAMRQL   GWMHNRLRMI A
Sbjct: 293 PQVSRHRAFRSHTEALPWRDAPGDLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVA 352

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DSVPYFRIFNP  Q +RF
Sbjct: 353 MFLSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRIFNPVSQSQRF 412

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474
           DP+G FIRHWLPEL ++  + IH P   +   DL    +Y  PIVD   +    L  +
Sbjct: 413 DPEGRFIRHWLPELRDIDEKTIHGP---MKSTDLFAGNSYHNPIVDLGSSRQRALEAF 467


>gi|146282327|ref|YP_001172480.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501]
 gi|145570532|gb|ABP79638.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501]
          Length = 476

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/474 (41%), Positives = 279/474 (58%), Gaps = 15/474 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+WLR+DLR +DN AL +A   +    +AV++ TP QW  H  +A +  F   +L+++
Sbjct: 2   TQLIWLRSDLRTSDNTALASAM--AAGPTVAVYLITPGQWLAHDDAACKVDFWLRNLVEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L    +         +  + + L   C +  V +L YN +Y +NE RRD+ +  RL+
Sbjct: 60  AGRLQALNVPLLIRDVEEWQAAPDALLKLCQELAVQRLHYNGEYGVNEQRRDQAVAARLR 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA----IR 183
              I  + + D +L  PGS+L  +   +KV+  FR+A +  L  +    +  PA    + 
Sbjct: 120 AAGIDVRRYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPACVAPPAPQHPMT 179

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +   V P  + R FD P   +  ++P GE  A H L  F  + ++ Y ++RD+PA  GTS
Sbjct: 180 VASDVPPDEV-RGFDRPSDYLRTLWPAGETFAQHRLAAFIGDDLHQYHQRRDLPAEPGTS 238

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS YL+ GV+S RQC +         L    +GA +W+NEL+WREFY+H++  YP V M
Sbjct: 239 QLSAYLAAGVISIRQCLHAAVASNRGELDSGSAGATTWINELLWREFYKHILVGYPRVSM 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F   TE + W + +  LQAW++G TGFPIIDAAMRQL   GWMHNRLRM+TA FL K
Sbjct: 299 HRAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRMVTAMFLSK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DSVPYFR+FNP  Q +RFDP G 
Sbjct: 359 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQRFDPDGQ 418

Query: 424 FIRHWLPELNNVPTQYIHAP---HSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           F+R WLPEL  +  + IH P    S   K D    YP PI+D  ++    L+ +
Sbjct: 419 FLRRWLPELQGLGKREIHNPSTQRSLFGKAD----YPAPIIDLGESRARALDAF 468


>gi|218893757|ref|YP_002442626.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58]
 gi|218773985|emb|CAW29800.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58]
          Length = 481

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/481 (41%), Positives = 281/481 (58%), Gaps = 22/481 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
             + ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +
Sbjct: 2   NGLPMNLIWFRCDLRTTDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRN 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L+   I      C ++  + E +   C +  V  +  N++Y +NE RRD+ + 
Sbjct: 60  LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +RL+ + +   S  D +   PGS+L      ++V++ FRK   + L QA      +P +R
Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVR 173

Query: 184 ----------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                     L     P  +P  F  P  ++  ++P GE+ A   LR F  + +  Y E+
Sbjct: 174 PRPQPQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA+ GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H
Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKH 292

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  YP V   +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRL
Sbjct: 293 ILVGYPRVSRHRPFREETEALCWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRL 352

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+ A FL K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  
Sbjct: 353 RMVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLS 412

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q +RFDP+G FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  
Sbjct: 413 QSERFDPRGEFIRHWLPELAGLERKAIHDPSSL--GLFAGVDYPRPMVDLKASRERALAA 470

Query: 474 Y 474
           +
Sbjct: 471 F 471


>gi|170723611|ref|YP_001751299.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida W619]
 gi|169761614|gb|ACA74930.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas putida W619]
          Length = 480

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/475 (42%), Positives = 282/475 (59%), Gaps = 17/475 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AAC    A  +A+++A+P QW+ H  +A +  F   +L  +
Sbjct: 1   MQLIWLRSDLRVNDNTALSAACERGPA--VALWLASPGQWQAHDDAACKVDFWLRNLRDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL    I     +   +D + + L   C Q ++  + +N +Y INE  RD+     L+
Sbjct: 59  RQSLEGLNIPLLVRRIDTWDQAAQTLLDVCRQHKIEAVHWNDEYGINENSRDQATRALLE 118

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLT 185
              V   ++ D +L  PGS+L  +   ++V++ F+K  +++L     RSLP   P ++  
Sbjct: 119 ASGVQAHNYLDQLLFRPGSVLTRSGDYFQVFSQFKKVCLEHL----HRSLPSQAPRVKRQ 174

Query: 186 GPVTPSNIP-----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            PV  ++ P       FD P +A+   +P GE  A   L +F  E +  Y   RD+PA  
Sbjct: 175 APVGIASDPIPQHIEGFDKPSRALSEHWPAGEDEAQARLSRFVDETIEDYHHLRDLPAKP 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLS YL+ GV+SPRQC +              +G  +W+NEL+WREFY+H++  YP 
Sbjct: 235 GTSQLSAYLAAGVISPRQCLHAALASNRGEFDSGSTGTQTWINELLWREFYKHILTGYPQ 294

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   + F   TE + W      L+AW+QG TGFPIIDAAMRQL   GWMHNRLRMI A F
Sbjct: 295 VSRHRAFRTHTELLPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMF 354

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR+GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDP
Sbjct: 355 LSKNLLIDWRLGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDP 414

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQY 474
           QG FIRHW+PEL  +  + IH P    +K+  + N Y  PIVD   +    L  +
Sbjct: 415 QGHFIRHWVPELRGLDEKSIHQPTQ--NKDLFADNSYHRPIVDLSSSRQRALEAF 467


>gi|92112598|ref|YP_572526.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter
           salexigens DSM 3043]
 gi|91795688|gb|ABE57827.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter
           salexigens DSM 3043]
          Length = 473

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/472 (42%), Positives = 268/472 (56%), Gaps = 13/472 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW R+DLR  DN+AL AA       VIAVF+ +  QW++H   A +  F    +  +
Sbjct: 4   LQMVWFRSDLRTLDNRALSAAAER--GPVIAVFLTSIPQWQRHDHGANKIDFWLRGVAAL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ LS   I     +   +D++ + L     Q   T L +NR+Y +NE RRD  +E+   
Sbjct: 62  REHLSGLNIPLLQRRIETYDEAPDALLKLAHQHGATALHFNREYPLNERRRDAAVERAFH 121

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV--QADLRSLPVPAIRLT 185
              I      D+V   PG +L    + Y V+TPF KA  + L   +  L   P P  RL 
Sbjct: 122 DAGIAVTGHTDAVAYAPGELLTGKGEPYSVFTPFAKAWHRQLEGHRLALTHAPAPQTRLA 181

Query: 186 ---GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               P     +P   D P  A    +P G++ A   L +F + +  +Y  QRD PA+ GT
Sbjct: 182 IEADPAPSRELPDACDTPLDA--SRWPAGQEEAGDRLERFLRFRGRHYRRQRDFPALPGT 239

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL++G+LS RQC   +  +    L    +G  +W NELIWREFY H+ A +P + 
Sbjct: 240 SELSPYLALGMLSHRQCLQAVMSDNDGHLADGDAGLTAWANELIWREFYLHIAASFPDIS 299

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PF P T  + W  D    +AW +G TG+P++DAAMRQL   GWMHNRLRM+TA FL 
Sbjct: 300 RHRPFQPHTRDLAWRDDDAGFRAWCEGRTGYPLVDAAMRQLVQCGWMHNRLRMVTAMFLS 359

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE +FM  L+DGD ASNNGGWQWAASTG D+ PYFRIFNPT Q +RFDP+G
Sbjct: 360 KHLLIDWRRGEAFFMRHLVDGDFASNNGGWQWAASTGTDAAPYFRIFNPTTQAERFDPEG 419

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            FI HWLPEL  +  +    P S   + D    Y LPIVDHK A    L+ +
Sbjct: 420 RFIAHWLPELAPLAVKSRFFP-SEAQRRD--TGYTLPIVDHKAARQRALDAF 468


>gi|319427180|gb|ADV55254.1| Deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens 200]
          Length = 493

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/492 (41%), Positives = 289/492 (58%), Gaps = 18/492 (3%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSH 59
           AT+ +   L+W R DLR+ DN+AL AAC  + A+   + A++IATP QW  H ++  Q  
Sbjct: 9   ATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVAPIQLD 68

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI   +  + K L   GI F+  Q   F D  +++  YC Q  +T++F   + EINE  R
Sbjct: 69  FIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEINERVR 128

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D+     +   V     D+  LL PG++LN + +MY+V+TPF +   +   +  +  L V
Sbjct: 129 DQAC---IDAGVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAILPLGV 185

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           PA    GPV P   P+  +     +    +  GE  A  +L  F ++KV  Y + RD PA
Sbjct: 186 PAP--LGPVLPE--PKALNLAVNKVSSEQWGAGEGQAKRLLCDFVQQKVQDYKQDRDFPA 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS +SPYL+IGVLS RQC   L + F ++++   S   +WLNEL+WREFYRHL+  +
Sbjct: 242 LDGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLLVAF 301

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +     F    ++++W  +    +AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ A
Sbjct: 302 PDLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVA 361

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++F
Sbjct: 362 SFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKF 421

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDL---SLNYPLPIVDHKKACHHTL 471
           DP G+FIR +LPEL +   + +H P++     L K  L      YP  IVDH +A    L
Sbjct: 422 DPDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARVRAL 481

Query: 472 NQYYAAKKQSLL 483
           +     KK S L
Sbjct: 482 SVLGVLKKASAL 493


>gi|237799740|ref|ZP_04588201.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022595|gb|EGI02652.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 482

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/472 (40%), Positives = 275/472 (58%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QW  H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAALQR--GPTLAVYLLSPAQWHSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L + C + +V  +  N++Y +NE RRD+ +++ L+
Sbjct: 59  EKALGKLNVPLLIREADTWDKAPEVLSTLCKELKVEGVHLNQEYGVNETRRDQAVQQTLE 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I    + D +L  PGSIL      ++V+T F+K     L +A  R +  P  +    
Sbjct: 119 KDGIHVTHYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRLVRTPPAQQPLS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           V    IP   + F  P +A+  ++P GE  A   +  F  E++ YY   RD PA  GTSQ
Sbjct: 179 VKSDAIPEQVKGFATPSKALRDLWPAGEAEASRRMAAFADEQISYYKTDRDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  +P V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGFPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPDELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+ WLPEL ++  + +H P S +     + +YP PIVD  K+    L  + A
Sbjct: 419 IKRWLPELADLNKKQLHDPSS-IGGLFGAADYPKPIVDLSKSRARALAAFKA 469


>gi|146293808|ref|YP_001184232.1| deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens CN-32]
 gi|145565498|gb|ABP76433.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella putrefaciens
           CN-32]
          Length = 493

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/492 (41%), Positives = 289/492 (58%), Gaps = 18/492 (3%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSH 59
           AT+ +   L+W R DLR+ DN+AL AAC  + A+   + A++IATP QW  H ++  Q  
Sbjct: 9   ATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWECHDVAPIQLD 68

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI   +  + K L   GI F+  Q   F D  +++  YC Q  +T++F   + EINE  R
Sbjct: 69  FIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEINERVR 128

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D+     +   V     D+  LL PG++LN + +MY+V+TPF +   +   +  +  L V
Sbjct: 129 DQAC---IDAGVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAILPLGV 185

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           PA    GPV P   P+  +     +    +  GE  A  +L  F ++KV  Y + RD PA
Sbjct: 186 PAP--LGPVLPE--PKALNLAVNKVSSEQWGAGEGQAKRLLCDFIQQKVQDYKQDRDFPA 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS +SPYL+IGVLS RQC   L + F ++++   S   +WLNEL+WREFYRHL+  +
Sbjct: 242 LDGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLLVAF 301

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +     F    ++++W  +    +AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ A
Sbjct: 302 PDLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVA 361

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++F
Sbjct: 362 SFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKF 421

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDL---SLNYPLPIVDHKKACHHTL 471
           DP G+FIR +LPEL +   + +H P++     L K  L      YP  IVDH +A    L
Sbjct: 422 DPDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARVRAL 481

Query: 472 NQYYAAKKQSLL 483
           +     KK S L
Sbjct: 482 SVLGVLKKASAL 493


>gi|120598121|ref|YP_962695.1| deoxyribodipyrimidine photo-lyase [Shewanella sp. W3-18-1]
 gi|120558214|gb|ABM24141.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. W3-18-1]
          Length = 493

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/492 (41%), Positives = 289/492 (58%), Gaps = 18/492 (3%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSH 59
           AT+ +   L+W R DLR+ DN+AL AAC  + A+   + A++IATP QW  H ++  Q  
Sbjct: 9   ATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVAPIQLD 68

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI   +  + K L   GI F+  Q   F D  +++  YC Q  +T++F   + EINE  R
Sbjct: 69  FIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEINERVR 128

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D+     +   V     D+  LL PG++LN + +MY+V+TPF +   +   +  +  L V
Sbjct: 129 DQAC---IDAGVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAILPLGV 185

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           PA    GPV P   P+  +     +    +  GE  A  +L  F ++KV  Y + RD PA
Sbjct: 186 PAP--LGPVLPE--PKALNLAVNKVSSEQWGAGEGQAKRLLCDFVQQKVQDYKQDRDFPA 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS +SPYL+IGVLS RQC   L + F ++++   S   +WLNEL+WREFYRHL+  +
Sbjct: 242 LDGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLLVAF 301

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +     F    ++++W  +    +AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ A
Sbjct: 302 PDLSKNYNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVA 361

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++F
Sbjct: 362 SFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKF 421

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDL---SLNYPLPIVDHKKACHHTL 471
           DP G+FIR +LPEL +   + +H P++     L K  L      YP  IVDH +A    L
Sbjct: 422 DPDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARVRAL 481

Query: 472 NQYYAAKKQSLL 483
           +     KK S L
Sbjct: 482 SVLGVLKKASAL 493


>gi|170727122|ref|YP_001761148.1| deoxyribodipyrimidine photo-lyase [Shewanella woodyi ATCC 51908]
 gi|169812469|gb|ACA87053.1| Deoxyribodipyrimidine photo-lyase [Shewanella woodyi ATCC 51908]
          Length = 469

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/463 (41%), Positives = 282/463 (60%), Gaps = 13/463 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W+R DLR  DN AL  A  N      A+FI+TP+QW  H  +  +  FI   LLQ+++
Sbjct: 3   LLWIRRDLRCFDNPALMDAVAN--GCRYALFISTPQQWDLHHEAPIKLDFIRRHLLQLEQ 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L + G+   +   ++F    E L  +C +  + ++  N + E NE +RD+ L   L   
Sbjct: 61  QLFELGVKLVHLTSTDFSAQSELLIRFCREHHIHRVLANSEPEFNEQQRDRSL---LSSG 117

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +  + +D  V+ P G +LN + +M+KV+TPF+KA ++++ +  +  +  P   L+ P++P
Sbjct: 118 LDIEFYDCDVIAPRGRVLNQSGEMFKVFTPFKKAWLKHVREFGVECIGRPQ-GLSKPLSP 176

Query: 191 -------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                              ++   +P+ ++    ++  F   KV  Y E+RD PAI+GTS
Sbjct: 177 PARDLIGELNSSSSLINSSSLSTSWPLADEVMEKVIPHFFSAKVCDYKERRDFPAIKGTS 236

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IG LSPR  + +L   +  L+      AF WLNELIWR+FY+HL+  YP +  
Sbjct: 237 GLSPYLAIGALSPRTLYQQLLARYPQLIEDDNHPAFCWLNELIWRDFYKHLLFHYPRLSK 296

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F+    K +W        AW +G TG+P++DAAMRQL   GWMHNRLRM+ ASFL K
Sbjct: 297 QTSFLEKYAKTQWPGTQAEFDAWSKGETGYPLVDAAMRQLVRTGWMHNRLRMVVASFLTK 356

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LLVDWR GE++FMS L+DGD ++NNGGWQWAASTG D+ PYFR+FNP +Q ++FDP G 
Sbjct: 357 HLLVDWRQGEQFFMSHLIDGDHSANNGGWQWAASTGCDAQPYFRVFNPILQSQKFDPNGD 416

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           FIR +LPELN++PT+YIH PH ++ K+ +S  Y  P+V+HK A
Sbjct: 417 FIRKYLPELNDIPTKYIHFPHDYMAKHGVSDTYWPPVVEHKAA 459


>gi|313107322|ref|ZP_07793517.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016]
 gi|310880019|gb|EFQ38613.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016]
          Length = 476

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/477 (41%), Positives = 279/477 (58%), Gaps = 22/477 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +L ++
Sbjct: 1   MNLIWFRCDLRTTDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRNLGEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   I      C ++  + E +   C +  +  +  N++Y +NE RRD+ + +RL+
Sbjct: 59  QRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRLR 118

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---- 183
            + +   S  D +   PGS+L      ++V++ FRK   + L QA      +P +R    
Sbjct: 119 EQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVRPRPQ 172

Query: 184 ------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                 L     P  +P  F  P  ++  ++P GE+ A   LR F  + +  Y E+RD P
Sbjct: 173 PQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEKVAQERLRDFADQHLADYHERRDFP 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A+ GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  
Sbjct: 232 ALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVG 291

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           YP V   +PF   TE + W +    L+AW+QG TG  IIDAAMRQL   GWMHNRLRM+ 
Sbjct: 292 YPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGITIIDAAMRQLLATGWMHNRLRMVV 351

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           A FL K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +R
Sbjct: 352 AMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSER 411

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           FDP+G FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  +
Sbjct: 412 FDPRGEFIRHWLPELAGLERKAIHDPSSL--GLFAGVDYPRPMVDLKASRERALAAF 466


>gi|149377119|ref|ZP_01894869.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
 gi|149358655|gb|EDM47127.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
          Length = 466

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/473 (40%), Positives = 272/473 (57%), Gaps = 12/473 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW RNDLRI DN AL AAC     +V A FI TP QW++H  S  +  F+      +
Sbjct: 2   TQLVWFRNDLRIADNAALTAACKQQQ-QVQACFIVTPTQWQEHDWSPARVQFVLDHANAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++ GI   +   + F DS+E L+ +C ++ +  + +N +Y +NE RRDK ++  L 
Sbjct: 61  SEELAKLGISLSFITATTFADSVEKLEKFCRRESIRHVHFNEEYGVNERRRDKAVKHALD 120

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIRLT 185
              V    + D  + P G+IL    + Y V+TPF +      +  Q  L  +P P     
Sbjct: 121 EIGVAVNKYRDQTVAPVGNILTQQGEPYSVFTPFSRRWRSWIDEAQPTLFPIPKPVGDTV 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            P     + + FD P      +   GE  A   L +F  +    Y   RD+P++ GTS L
Sbjct: 181 EPPHYEGLSKSFDNPPPR---LVETGEDAAHRQLEQFLDDHAGDYKNLRDLPSVDGTSLL 237

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ GVLS +QC    ++     +   + G  +W NE+ WR+FY +++  YP + M +
Sbjct: 238 SPYLANGVLSGKQCLIAARQN--QGMGGNQEGLVTWTNEIAWRDFYINILYHYPRISMHR 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P TE ++WN      +AWK G TG PI+DAAMRQLN  GWMHNRLRMITA FL K+L
Sbjct: 296 AFKPETEALKWNTPGENFEAWKAGNTGIPIVDAAMRQLNQTGWMHNRLRMITAMFLTKNL 355

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR+GE YFMS+L+DG LASNNGGWQW+ASTG D+ PYFR+FNP  Q +RFDP G FI
Sbjct: 356 FIDWRLGEAYFMSKLVDGFLASNNGGWQWSASTGTDAAPYFRVFNPATQSERFDPDGEFI 415

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++PE+  +  + IH P  W+    +   YP P+VD K++    + ++ A K
Sbjct: 416 RKYVPEIAKLDNKRIHQP--WVG-GVIPGGYPRPVVDLKESRKEAIAKFQALK 465


>gi|330502050|ref|YP_004378919.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
           NK-01]
 gi|328916336|gb|AEB57167.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
           NK-01]
          Length = 478

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/469 (41%), Positives = 270/469 (57%), Gaps = 7/469 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R+DLR+ DN AL  A +      IA+++ TP+QW++H  +  +  F   +L ++ 
Sbjct: 3   QLMWFRSDLRVQDNTALSQAMNR--GATIALYLITPDQWQRHDDAPCKVDFWLRNLRELS 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K+L++  +     QC ++ D    +   C +  +  +  N +Y INE  RD+ +   L  
Sbjct: 61  KALAELNVPLLVRQCHDWGDVPVQVADVCQEHTICAVHVNEEYGINESLRDRRVSAYLSQ 120

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + I   S  D +L  PGS+L  +   ++VY+ FRK   + L  A    +  P  +    V
Sbjct: 121 QAIAWHSHLDQILFKPGSVLTRSGGYFQVYSQFRKVCYERLHSALPALVTQPKAQTPMDV 180

Query: 189 TPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               IP   + F  P +++  ++P GEQ AL  L +F  E+V +Y ++RD PA  GTSQL
Sbjct: 181 KSDIIPDSVKGFATPSESLRLLWPAGEQAALQRLERFADEQVAFYKDERDFPAKPGTSQL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL+ G+LSPRQC +               G  +W+NEL+WREFY+H++  YP V   +
Sbjct: 241 SAYLAAGILSPRQCLHAALSANRGEFDSGNQGVITWINELLWREFYKHILVGYPRVSRHR 300

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P TE + W      L AW++G TG PIIDAAMRQL   GWMHNRLRMI A FL K+L
Sbjct: 301 AFRPETEAVPWRNAPEELAAWQEGRTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTKNL 360

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP  Q ++FDP G FI
Sbjct: 361 LIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPISQSQKFDPDGQFI 420

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           R W+PEL  +  + IH P S L        YP PIVD  ++    L  +
Sbjct: 421 RQWVPELAGLNKRDIHDP-SALGGLFAPSGYPRPIVDLARSRERALAAF 468


>gi|119944756|ref|YP_942436.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
 gi|119863360|gb|ABM02837.1| Deoxyribodipyrimidine photo-lyase type I [Psychromonas ingrahamii
           37]
          Length = 453

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/473 (42%), Positives = 271/473 (57%), Gaps = 23/473 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HLVW RNDLR +DN ALY AC      V  ++  TP QW+ H ++  Q+ FI  +L  +
Sbjct: 1   MHLVWFRNDLRTSDNSALYYACLK--GPVTGIYFVTPGQWKNHQLAPIQADFIEQNLKVL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L+  GI     + ++F      L        +  +  N + EINE  RD+ ++K   
Sbjct: 59  AEELAALGIPLLIEEVADFSHIPARLKQIQKDHHINTIHANDEPEINEKERDQAVKKAGL 118

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V+   +    +L  GS+L     MYKV+T FR A ++ + Q DL  LP PA ++    
Sbjct: 119 PLVL---YQCDCILQAGSVLTKQGGMYKVFTAFRNAWMKEVKQTDLTPLPKPADQMPSLN 175

Query: 189 TP--SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                NI   +D   +     +P GE  AL  LR F  + +  Y   RDIP++ GTS LS
Sbjct: 176 VSWSKNISVNYD---KKSSQAWPAGETAALRRLRHFLLQDIEDYHHNRDIPSLDGTSGLS 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  GV+S ++C   +   F D L    S  FSW+NE++WREFYRHLM F P +C GK 
Sbjct: 233 AYLKFGVISAKRCVYEVLAAFPDALDAQDSSVFSWINEIVWREFYRHLMIFNPQLCKGKN 292

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    + I W+ +    +AW +G TG+ ++DAAMRQLN  GWMHNRLRM+TASFL K LL
Sbjct: 293 FNKLADNITWSNNPDDFKAWCEGRTGYGLVDAAMRQLNQTGWMHNRLRMVTASFLTKHLL 352

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YF   L+DGDLASNNGGWQWAASTG D+ PYFRIFNP IQ ++FDP+G FIR
Sbjct: 353 IDWRWGEAYFREHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIIQSQKFDPKGLFIR 412

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            ++ ELN    + IH P +              IV+HK+A  + L++Y   KK
Sbjct: 413 KYVKELNGFDNKKIHFPVN-------------AIVEHKQARLNALDRYSVLKK 452


>gi|24374895|ref|NP_718938.1| deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1]
 gi|24349596|gb|AAN56382.1|AE015774_17 deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1]
          Length = 512

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/504 (40%), Positives = 284/504 (56%), Gaps = 40/504 (7%)

Query: 11  LVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           L+W R DLR+TDN+A  AAC     +  AK+ A++IATP QW QH I+  Q  FI   + 
Sbjct: 13  LMWFRQDLRLTDNQAFTAACDWVRQHHAAKLKAIYIATPSQWHQHDIAPIQLDFIQRHVN 72

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L   G+ F+  Q  +F D   +L SYC +  + ++F  ++ EINE +RD+     
Sbjct: 73  LLAQGLVSLGVEFELIQLDSFRDIPAFLTSYCEEHSIGRVFAGQEPEINEQKRDQAC--- 129

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           ++  +     D+  LLPPG++LN +  MY+V+TPF +   +   +  +  L VPA    G
Sbjct: 130 VEAGIPLSLSDEHCLLPPGTVLNLSGDMYRVFTPFSRKWREVAAKQAILPLGVPAP--LG 187

Query: 187 PVTPSNIPRFF-------------------DYPFQAIDPM-----FPIGEQNALHILRKF 222
            +     P FF                    +   A +P+     +  GE  A  +L +F
Sbjct: 188 SILSEPKPLFFKNIGSTYLAASKDIASSKKGFNQTAPNPLISSEQWAAGEGQAKRLLNQF 247

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            ++KV  Y + RD PAI GTS +SPYL+IGVLSPRQC   L + F ++++   S   +WL
Sbjct: 248 IQQKVQDYKQDRDFPAIDGTSVISPYLAIGVLSPRQCVAALLQRFPEVIVDDTSPGRTWL 307

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           NELIWREFYRHL+  +P +  G  F    + + W  +     AW +G TG+PI+DAAMRQ
Sbjct: 308 NELIWREFYRHLLVAFPDLSKGNNFNRQADHVLWRNNQSEFLAWCEGKTGYPIVDAAMRQ 367

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           LN  GWMHNRLRM+ ASFL K LL+DWR GE YF   L+DGDLA+NNGGWQW+A  G D+
Sbjct: 368 LNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDA 427

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-----SWLDKNDLS--LN 455
            PYFRIFNP  Q ++FDP G FIR +LPEL +     +H P+     S  +    +   +
Sbjct: 428 QPYFRIFNPMSQSEKFDPDGRFIRKYLPELASWGVTRLHQPNQQKMPSLFEAPLFASQAD 487

Query: 456 YPLPIVDHKKACHHTLNQYYAAKK 479
           YP  IV+H  A    L      KK
Sbjct: 488 YPNAIVEHNAARARALTVLGVLKK 511


>gi|290510440|ref|ZP_06549810.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55]
 gi|289777156|gb|EFD85154.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55]
          Length = 295

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/280 (61%), Positives = 208/280 (74%), Gaps = 4/280 (1%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
           PF  +  +F   E+ AL  LR FC++    Y  QRD PA++GTS+LSP L+ GVLSPRQC
Sbjct: 10  PFDGL--LFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRLSPCLATGVLSPRQC 67

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
            +RL  E    L    +GA +WLNELIWREFYRHLM +YP +C G+PFI WT+K+ W +D
Sbjct: 68  LHRLLTEHPAAL-DGGAGA-TWLNELIWREFYRHLMVYYPKLCKGRPFIAWTDKVAWRED 125

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
              LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL +DWR GE YFMSQ
Sbjct: 126 DAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLRLDWRAGERYFMSQ 185

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           L+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+R WLPEL  VP + 
Sbjct: 186 LIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFMRRWLPELAKVPEKA 245

Query: 440 IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +H P +W DK  + L+YP PIVDHK+A   TL  + AA+K
Sbjct: 246 LHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 285


>gi|59713936|ref|YP_206711.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri
           ES114]
 gi|59482184|gb|AAW87823.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri
           ES114]
          Length = 479

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/483 (43%), Positives = 280/483 (57%), Gaps = 25/483 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++  VW R+DLR  DN AL AA  N      A+FI +  QW++H  +  Q   I   L++
Sbjct: 6   NLQCVWFRHDLRTIDNPALQAAVDNQQP-TFALFIYSESQWKKHNKAPIQIDLIKRRLVE 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L Q  I         F +    + +   +  V  LF N++YE +E  RD  + + L
Sbjct: 65  LKNELEQLNIPLIVISSPLFSEIPAKITALFNELSVNALFANKEYEHDERLRDTQVYESL 124

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            +   C  FD   +LP G+I+N   Q YKV+TPF+KA   +  Q        P I  TG 
Sbjct: 125 LN-TNCYFFDAKCILPVGTIINRTQQPYKVFTPFKKAWKASFYQQQ------PHITKTGK 177

Query: 188 ---VTPSNIPRF-------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                P  I +        F +        +P+  +  + ILR+FC++KV  Y   RD P
Sbjct: 178 SVLCDPKLIKKLSLNNDDSFVFSSSNESGSWPVSTKAIIDILRQFCRQKVSQYHNNRDYP 237

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            IQGTSQLSPYL+IG +S +QC  RL  E    L     G   WL+ELIWREFY HL+ F
Sbjct: 238 EIQGTSQLSPYLAIGAISAKQCALRLHLEANYEL---NQGEDIWLDELIWREFYTHLLHF 294

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           YP++   + F+ + + IEW+ +    + W +G TGFPI+DAAM+QLNT GWMHNRLRMIT
Sbjct: 295 YPNLSKNQAFLSYDKYIEWDNNLDHFERWCKGETGFPIVDAAMKQLNTTGWMHNRLRMIT 354

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVKDL +DWR GE+YFMS+L+DGD ASNNGGWQW AS G DS PYFRIFNP  QGK+
Sbjct: 355 ASFLVKDLHIDWRWGEQYFMSKLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPITQGKK 414

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           FD   TFI+HWLPEL  +  + IH P+ + L K+D   NYP  IVDH +     +  Y  
Sbjct: 415 FDADCTFIKHWLPELKALSNKEIHHPNPAPLLKSD---NYPDQIVDHAQQRIKVIEVYKQ 471

Query: 477 AKK 479
           AK+
Sbjct: 472 AKQ 474


>gi|152989300|ref|YP_001350641.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
 gi|150964458|gb|ABR86483.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
          Length = 477

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/480 (40%), Positives = 277/480 (57%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVW R DLR +DN AL AA        +A+++ +P QWR+H  +  +  F   +L ++
Sbjct: 1   MNLVWFRCDLRTSDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRNLSEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   I      C ++  +   L   C +  +  +  N++Y  NE RRD+ + + L+
Sbjct: 59  QRQLAALNIPLLVRDCEHWRQAPTVLGRLCSELGIGAVHVNQEYGANEQRRDQAVARHLR 118

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---- 183
            + +      D +   PGS+L      ++V++ FR+   + L QA      +PA++    
Sbjct: 119 EQGVAFHEHLDQLFFAPGSVLTRGGGYFQVFSQFRRVCHERLYQA------LPAVQPRPQ 172

Query: 184 -------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                  L G   P  +P  F  P   +  ++P GE  A   LR F ++ +  Y EQRD 
Sbjct: 173 PQPPHRLLPGDPLPDAVP-GFAAPGAGLRALWPAGETAAQQRLRDFAEQHLDDYHEQRDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA+ GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++ 
Sbjct: 232 PALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGRQGAATWINELLWREFYKHILV 291

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            YP V   +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRLRM+
Sbjct: 292 GYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMV 351

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            A FL K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q K
Sbjct: 352 VAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSK 411

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474
           RFDP+G FIRHWLPEL  +  + IH P     +  L   ++YP  +VD K +    L  +
Sbjct: 412 RFDPRGEFIRHWLPELAGLERKAIHDP----SRLGLFAGVDYPQSMVDLKASRERALAAF 467


>gi|226946177|ref|YP_002801250.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ]
 gi|226721104|gb|ACO80275.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ]
          Length = 468

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 194/478 (40%), Positives = 284/478 (59%), Gaps = 18/478 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+WLR+DLR+ DN+AL AA        +A+++ +P QWR H  +  +  F   +L ++ 
Sbjct: 3   QLIWLRSDLRVRDNRALGAAM--GAGPTLALYLLSPAQWRTHDDAPCKVDFRLRNLAELS 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L+  G+     +   +D++   L   C +Q + ++  N +Y ++E RRD  +E+ LQ 
Sbjct: 61  HGLASLGVPLLIRRVDTWDEAPALLTRLCHEQNIVRVHVNDEYGVHESRRDAAVERALQA 120

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPV--PAIRL 184
           + V  +   D +LL P S+   +   ++++  FR+A    L  +   +  LP+  P + +
Sbjct: 121 QGVGLQRHLDQLLLAPDSLRTRSGGSFRLFAQFRRACHWRLAVSLPAVGGLPMAQPPLNV 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            G   P+ +   F  P +++  ++P GE  A   L +F + ++  Y E RD PA  GTS+
Sbjct: 181 VGNAVPAAL-EGFATPPESLRRLWPAGEIAAQRRLHEFVENRLAAYAEARDFPAEPGTSR 239

Query: 245 LSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           LSPYL+ GVLSPRQC +  L+    D   +P++ A  W +EL+WREFY+H++A +P V M
Sbjct: 240 LSPYLAAGVLSPRQCLHAVLRTGGFD---RPEASA--WFDELLWREFYKHILAGHPRVSM 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G+     TE + W      L AW+QG TGFP+IDAAMRQL   GWMHNRLRM+ A FL K
Sbjct: 295 GRALRTETEALPWRDAPQELAAWQQGRTGFPLIDAAMRQLLATGWMHNRLRMVVAMFLSK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE +FM  L+DGDLA+NNGGWQW ASTG D+VPYFR+FNP  Q +RFDP+G 
Sbjct: 355 NLLIDWRHGERWFMHHLIDGDLAANNGGWQWCASTGTDAVPYFRLFNPLAQSRRFDPEGR 414

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL ++  + IHAP   L        YP PIVD   +    L  + A +++ 
Sbjct: 415 FIRQWLPELASLDNRDIHAPAGALRPA----GYPPPIVDLPSSRERALAAFKALRRRG 468


>gi|187478325|ref|YP_786349.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N]
 gi|115422911|emb|CAJ49439.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N]
          Length = 485

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 195/462 (42%), Positives = 271/462 (58%), Gaps = 16/462 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR+DLR+ DN AL AA         A+F A P QW+ HG +A +  F   +L+ + +
Sbjct: 15  LVWLRSDLRLHDNPALAAAAAQGHTH--ALFFAAPGQWQSHGDAAIKIDFWRRNLVALHQ 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L++ G         ++ ++ + L  +C Q R+  +  N ++ INE RRD    +RLQ  
Sbjct: 73  ALAELGFDLSVITLQDWSEAPQALAQFCRQHRIESVHVNAEWGINERRRDGACAQRLQAE 132

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +      LLPPGS+ N     Y+V+TP+ +A  + L     R  P   +R      
Sbjct: 133 GIAFEVHQGGTLLPPGSVRNGKGDPYRVFTPYARACREKL-----RVAPPAPVRAPKAQG 187

Query: 190 PSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           P+  P  FD+P  A  P     ++P GE  A   LR F  + +  Y E+RD+PA+ GTS 
Sbjct: 188 PAFAPAEFDWPPSAEFPAQAATLWPAGETAAHERLRAFLDDGLMRYHERRDLPAVPGTSA 247

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GVLSP QC           +   ++G   W+ E++WREFY+HL+A YP++ M 
Sbjct: 248 LSPYLACGVLSPAQCLRAALRANQGEIDSGQTGPRVWITEILWREFYQHLLAAYPALSMH 307

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +P  P T  + W        AW+ G TG PI+DAA RQL   GWMHNRLRMI+A FL K+
Sbjct: 308 QPMRPETAYLAWRDAPQDAAAWRAGRTGIPIVDAAQRQLLATGWMHNRLRMISAMFLSKN 367

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE +FM+ L+DG+LA+NNGGWQW+ASTG D+VPYFR+FNP  Q ++FDP G F
Sbjct: 368 LLIDWRLGEAWFMAHLIDGELAANNGGWQWSASTGADAVPYFRVFNPITQSQKFDPDGVF 427

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           +R WLPEL N+ ++ IH P    D    +  YP  IVD K +
Sbjct: 428 LRRWLPELANLDSKSIHEPS---DAQRRASAYPKAIVDLKSS 466


>gi|83644572|ref|YP_433007.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
 gi|83632615|gb|ABC28582.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
          Length = 481

 Score =  366 bits (939), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 199/480 (41%), Positives = 275/480 (57%), Gaps = 10/480 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M   L W RNDLR  DN ALYAA   +   ++++IA F+ +PEQWR H ++  +  F+  
Sbjct: 1   MPRTLHWFRNDLRTRDNPALYAAAQRAREQNSELIACFLVSPEQWRSHDMADIKLDFMLR 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L  +Q  L++  I         FD++   L +   Q + + L +N ++ +NE RRDK +
Sbjct: 61  NLKALQAELAKLNIPLFILDAPRFDEAPTKLLTLMQQHQCSALTFNEEFGVNERRRDKAV 120

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L    +    F D  +LP GSI       Y V+TP+++A      +  +   P PA 
Sbjct: 121 KETLNAEGLEALKFRDQSILPAGSIRTGQGTPYAVFTPYKRAWFSQCPE-HIELWPEPAK 179

Query: 183 RLTGPVTP-SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           + +   TP  ++P       +     +  GE  AL  L  F + KV  Y EQRD PAI G
Sbjct: 180 QPSPMQTPEGDVPESVSGFDKVSSQTYAAGEDAALQKLDDFLEHKVDRYHEQRDFPAIDG 239

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            SQLSPYL++GVLS RQC++   +           G  +W+NELIWR+FY H++  +P +
Sbjct: 240 VSQLSPYLALGVLSGRQCFH-AAQRHRHASPNASEGVDTWINELIWRDFYIHILYDFPRI 298

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            M K F   TE ++W        AW +G TG PI+DAAMRQLN  GWMHNRLRMI A FL
Sbjct: 299 SMTKAFKQETENLQWRHSEKDFLAWCEGKTGIPIVDAAMRQLNQTGWMHNRLRMICAMFL 358

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+DWR+GE YFM +L+DG LA+NNGGWQW+ASTG D+ PYFR+FNP  Q +RFDP 
Sbjct: 359 SKNLLLDWRLGERYFMCKLIDGHLAANNGGWQWSASTGVDAAPYFRMFNPVAQSERFDPN 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           G FIRH+ PEL  +  + IH P S +      L YP+PIVD K +    L  +   K  +
Sbjct: 419 GDFIRHYAPELAELSAKLIHQPPSDVRSR---LGYPVPIVDLKASRERALQAFRELKNST 475


>gi|167031795|ref|YP_001667026.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1]
 gi|166858283|gb|ABY96690.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1]
          Length = 475

 Score =  365 bits (937), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 201/463 (43%), Positives = 275/463 (59%), Gaps = 19/463 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL AA        IA+++ +P QW+ H  +A +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSAATER--GPTIALWLVSPGQWQAHDDAACKVDFWLRNLRAL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL    I     +   +D + + +   C Q +V  + +N +Y INE +RD      L+
Sbjct: 59  RQSLEGLNIPLLIRKIDTWDQAPQAVLDVCRQHQVQSVHWNEEYGINEQQRDDATRALLE 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185
              I   S  D +L  PG+IL  +   ++V++ F+K  +++L     RSLP  A R+   
Sbjct: 119 KSSIQACSHLDQLLFRPGTILTRSGDYFQVFSQFKKTCLEHLH----RSLPALARRVERQ 174

Query: 186 GP--VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            P  +    IP+    F+ P +A+   +P GE  A   L +F  E +  Y + RD+PA  
Sbjct: 175 APLQIQSDPIPQHVDGFETPTRALREHWPAGEAEAQARLSRFLDETIDEYQQLRDLPAKH 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLS YL+ GV+SPRQC +              +G  +W+NEL+WREFY+H++  YP 
Sbjct: 235 GTSQLSTYLAAGVISPRQCLHGALASNRGEFDSGSTGVQTWINELLWREFYKHILNGYPQ 294

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   + F   TE + W      L+AWKQG TGFPIIDAAMRQL   GWMHNRLRM+ A F
Sbjct: 295 VSRHRAFRAHTEALPWRDAPADLEAWKQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMF 354

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDP
Sbjct: 355 LSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDP 414

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIV 461
           QG FIRHWLPEL ++  + IH P   +  +DL  N  Y  P+V
Sbjct: 415 QGRFIRHWLPELRDMDEKTIHEP---MKSDDLFANNSYHRPMV 454


>gi|77460957|ref|YP_350464.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
           Pf0-1]
 gi|77384960|gb|ABA76473.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
           Pf0-1]
          Length = 488

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/475 (41%), Positives = 273/475 (57%), Gaps = 9/475 (1%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T   + L+WLR+DLR  DN AL AA     +  +AV++ +P+QW++H  +  +  F   +
Sbjct: 4   TETDMQLIWLRSDLRQHDNTALAAAAERGPS--VAVYLLSPQQWQEHDDAPCKIDFWLRN 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++ KSL    I        ++D +   L   C Q ++  +  N +Y INE RRD  + 
Sbjct: 62  LHKLSKSLGDLNIPLLIRTAPHWDQAPAVLLELCRQLKIEAVHVNEEYGINESRRDAAVA 121

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPV-- 179
           K LQ   I   S+ D +L  PGS+L      ++V++ FRK   ++L ++   L+  P   
Sbjct: 122 KALQAEGITFHSYLDQLLFKPGSVLTRTGTYFQVFSQFRKVCYEHLHRSMPSLKQAPGKQ 181

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            A+ +     P  I   F  P  ++  ++P GE  A   L  F   ++ YY  +RD PA 
Sbjct: 182 SALNIASDPVPEAI-EGFPTPGASLRALWPAGETEARRRLDTFADAQIDYYKSERDFPAK 240

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTSQLS YL+ GV+SPRQC +   +         K GA +W+NEL+WREFY+H++  YP
Sbjct: 241 PGTSQLSAYLAAGVISPRQCLHAALQSNQGEFESGKVGAVTWINELLWREFYKHILVGYP 300

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V   + F P TE + W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A 
Sbjct: 301 RVSRHRAFRPETEDLAWRNAPEDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAM 360

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DS PYFRIFNP  Q ++FD
Sbjct: 361 FLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDSAPYFRIFNPVSQSEKFD 420

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            +G FI+HWLPEL  +  + IH P S      ++ +YP PIV+   +    L  +
Sbjct: 421 SEGLFIKHWLPELAGLNKKEIHNPASVGGLFGVA-DYPAPIVNLSASRERALAAF 474


>gi|317052654|ref|YP_004113770.1| deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
 gi|316947738|gb|ADU67214.1| Deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
          Length = 469

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 199/474 (41%), Positives = 277/474 (58%), Gaps = 20/474 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWLRNDLRI+D +AL AA       V+AVF     QW++H ++A +  F+  +L  +
Sbjct: 1   MNLVWLRNDLRISDQRALGAA-AAEGGSVLAVFCLCQRQWQRHHMAAVRRDFLLRNLECL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L   GI      C +F    E L          +LF+N +Y I+E RRD  +E+  +
Sbjct: 60  RLQLQAVGIPLFVLDCHDFAAVPEALLKLARTTGARRLFFNEEYAIDEWRRDMAVERCFR 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--- 184
              +  +   D V++P G + +   + Y+V+TPF+KA ++ +V+      P P +     
Sbjct: 120 ENGMEVRRCCDHVVVPAGQLRSGRGECYRVFTPFQKAWLKLVVENPALLAPAPIVNTQPH 179

Query: 185 ----TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                G   P++IP         +  ++P GE  A   L+ F    +  Y   RD PAI+
Sbjct: 180 PFPGDGAALPTDIP-------HPLAHLWPAGEAEAQRRLQAFLDGPIRRYHLDRDFPAIE 232

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LSPYL+ GVLS RQC        ++L      GA  WL+ELIWREF++H++  +P 
Sbjct: 233 GTSALSPYLACGVLSIRQC----VSAALELANGGSEGARVWLSELIWREFFQHILRAFPR 288

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   + F   TE + W  D     AW +G TG+PI+DAAM QL++ GWMHNRLRMI A F
Sbjct: 289 VSTNRAFQEHTETVAWRYDEGEFAAWCEGRTGYPIVDAAMAQLHSTGWMHNRLRMICAMF 348

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDLL+DWR GE YFM  L+DGDLA+NNGGWQWAASTG D+VPYFR+F+PT Q KRFDP
Sbjct: 349 LTKDLLIDWRWGERYFMEHLVDGDLAANNGGWQWAASTGTDAVPYFRVFHPTTQSKRFDP 408

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            G FIRH+LP+L  +  +YIH PH        +++YP P+VDHK A    ++ +
Sbjct: 409 HGQFIRHFLPQLAELDEKYIHEPHDSSGLLRPNIDYPRPMVDHKVARQRAIDAF 462


>gi|192360182|ref|YP_001982413.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107]
 gi|190686347|gb|ACE84025.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107]
          Length = 476

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/473 (41%), Positives = 280/473 (59%), Gaps = 22/473 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW RNDLR+ DN ALY A       V+AV++       +  I+  +  FI   LL + +
Sbjct: 4   LVWFRNDLRVRDNPALYKAAEEKQG-VLAVYVHCEAYVGRFPIAPARLDFIRRHLLVLVR 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+Q  I  +    +  +     L +   Q  + K F+N +Y ++E+ RD  + + L+ +
Sbjct: 63  ELAQLNIPLRLIAVNRAEQIAPALAALVTQYNIDKCFFNAEYPLDELARDHQVNQLLRAQ 122

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL----T 185
            V+ K   D V++PPG I     + YKV+T F++  +Q ++   L+ L +P  +      
Sbjct: 123 GVLVKRCHDRVIVPPGMIRTGNGEPYKVFTAFKRKWLQTVMPLHLQPLGLPDKQAQPMPV 182

Query: 186 GPVTPSNIPRFF-DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PVT ++I R F ++  + ++ ++P GE  A   L  F +  + +Y ++RD PA+QGTS 
Sbjct: 183 KPVTQADINRLFGEHSVRDLEHLWPAGEDEACARLDSFIESGLTHYQDKRDFPALQGTST 242

Query: 245 LSPYLSIGVLSPRQ------CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           LSPYL+IG LSPRQ      C+ +   E         +GA  W++ELIWREFY+H++  +
Sbjct: 243 LSPYLAIGSLSPRQAISSVLCYTQGDWE-------SNAGASCWISELIWREFYQHVVVDF 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P VC  +     TE   W KD      W QG TG P++DAAMRQL   GWMHNRLRM+ A
Sbjct: 296 PQVCKHRAMQVHTEAFPWKKDKKQFSRWCQGNTGIPLVDAAMRQLVMTGWMHNRLRMVVA 355

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+L +DWR+GE +FM  L+DGD A+NNGGWQW+ASTG D+ PYFR+FNP  Q +RF
Sbjct: 356 MFLTKNLQIDWRLGERFFMEHLIDGDFAANNGGWQWSASTGTDAAPYFRVFNPISQSERF 415

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
           DPQG FIR W+PEL +VP +YIH P +  DK+  SL YP P+VD  ++   T+
Sbjct: 416 DPQGDFIRSWIPELADVPLKYIHNPSA--DKSFSSLQYPAPMVDLAESRKSTI 466


>gi|56460496|ref|YP_155777.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
 gi|56179506|gb|AAV82228.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
          Length = 468

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 198/469 (42%), Positives = 270/469 (57%), Gaps = 9/469 (1%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R+DLRI DN A+++ACH  D   +A+F    E W+ H  +  +  FI+ +L  +Q+ 
Sbjct: 5   IWFRSDLRILDNPAVFSACHG-DEPPLAIFFVCHETWKSHDWAPIKVDFIWRNLECLQQD 63

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L++KGI  Q      F      L S+C + ++ ++  N +Y ++E RRD      L +  
Sbjct: 64  LAEKGIELQVQLVPKFSQVPGALRSFCRENKIARVHINAEYALDEKRRDAATNAVLSNDD 123

Query: 132 I-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           I   S   ++L+ PG +       YK +TPF +   Q L +    S P+  I+    VT 
Sbjct: 124 IELVSHHGNLLVSPGEVRTQQGDYYKKFTPFNRRWRQVLSEKTY-SEPL-QIKSYSRVTA 181

Query: 191 SNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             +P   + P    D   +  GEQ  L  L +F    V  Y + RD+PA  GTSQLS YL
Sbjct: 182 KGLP---ECPLGRKDSSDWSAGEQQVLGKLGQFVGHSVDDYQQARDLPAENGTSQLSAYL 238

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           + GV+ P+     L +   +      SGA +WL EL WREFY+HLM F P +  G+ F  
Sbjct: 239 AQGVIGPQTAVRALHKFSPEFPFGLASGADTWLTELAWREFYQHLMYFVPRLSKGESFQS 298

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
            T+ I+W +D    Q W  G TG+PI+DA MRQL + GWMHNRLRMITA+FLVKDLLVDW
Sbjct: 299 ETDSIQWLEDDDAFQRWCDGRTGYPIVDAGMRQLTSTGWMHNRLRMITANFLVKDLLVDW 358

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE +FM  L+DG   +NNGGWQW+AS G D+VPYFR+FNP  Q ++FDP G +IR W+
Sbjct: 359 RKGEAFFMQHLIDGSFPANNGGWQWSASVGTDAVPYFRVFNPVKQSEKFDPDGQYIRKWV 418

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            EL  VPT+YIH PHSWL +   S NY  P+V+HK A    L  +   K
Sbjct: 419 EELKEVPTKYIHWPHSWLQQQS-SNNYCDPMVEHKFARERFLTTFKQVK 466


>gi|229588295|ref|YP_002870414.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25]
 gi|229360161|emb|CAY47018.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25]
          Length = 481

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/471 (40%), Positives = 269/471 (57%), Gaps = 9/471 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL+WLR DLR+ DN AL AA       + AV++ TPEQW  H  +  +  F   +L  +
Sbjct: 1   MHLIWLRTDLRLHDNTALAAASQR--GPIAAVYLITPEQWLAHDDAPCKVDFWLRNLHAL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +  I       + +D +   L   C +  V  +  N +Y I+E RRD  + K L+
Sbjct: 59  SATLGELNIPLLIRTAATWDQAPRVLSQLCQELSVESVHVNEEYGIHESRRDAAVSKALE 118

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP----AIR 183
            + +   S+ D +   PGS+L      ++V++ FRK     L  A  R +  P    A+ 
Sbjct: 119 AQGVSFHSYLDQLFFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRIVAAPKAQAALT 178

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           L     P+ +   F+ P QA+  ++P GE  A   L  F  +++ YY ++RD PA  GTS
Sbjct: 179 LKSDPIPTTV-EGFEPPSQALRALWPAGEDEARRRLDAFADQQISYYKDERDFPAKPGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS YL+ GV+SPRQC +   +           GA +W+NEL+WREFY+H++  YP V  
Sbjct: 238 QLSAYLAAGVVSPRQCLHAALQTNGGEFESGDMGAITWINELLWREFYKHILVGYPRVSR 297

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P TE + W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K
Sbjct: 298 HRAFRPETEAVAWRNAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTK 357

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIF+P  Q ++FD  G 
Sbjct: 358 NLLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSEKFDSDGV 417

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           FI+HWLPEL  +  + +H P +      ++ +YP  IVD KK+    L  +
Sbjct: 418 FIKHWLPELAALNKKDVHNPDAAGGLFGVA-DYPRSIVDLKKSRERALAAF 467


>gi|307543860|ref|YP_003896339.1| deoxyribodipyrimidine photolyase [Halomonas elongata DSM 2581]
 gi|307215884|emb|CBV41154.1| deoxyribodipyrimidine photolyase [Halomonas elongata DSM 2581]
          Length = 502

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 188/470 (40%), Positives = 267/470 (56%), Gaps = 7/470 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   L+W R+DLR+ DN AL AA   S+  V+AVF+ +  QW +HG  A +  F +  +L
Sbjct: 1   MPPSLIWFRSDLRVHDNTALAAAA--SEGPVVAVFLRSTAQWLEHGHGANKLDFWHRGVL 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L   GI   +    +F  + + L +   +    +L +N +Y +NE RRD  +   
Sbjct: 59  ALRAALHGLGIPLLHRDIDDFAAAPDALLALARETGARRLHFNHEYPLNERRRDASVVDA 118

Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            +   +      D V   PG +       Y ++TPF KA  + +    L    +PAI+ +
Sbjct: 119 FEAAGLSAVGHHDGVAFAPGELRTGKGDFYGIFTPFAKAWHRQVTPERLALRDLPAIQAS 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV     P           P  +P GE  A   L +F + +  +Y E+RD PA  GTS 
Sbjct: 179 LPVASDPEPELPALDTAPAAPENWPAGENAAADRLERFLRWRARHYAERRDFPAESGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G++S RQC      E    L +  +G  +W+NELIWREFY+H++  +P VC  
Sbjct: 239 LSPYLALGMISHRQCLQAALAENDGGLAEGDAGLTAWVNELIWREFYQHVVVGFPEVCRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W  D+   +AW +G TG+P++DAAMRQL   GWMHNRLRM+TA FL K 
Sbjct: 299 RAFQAHTEALPWRDDTSAWRAWTEGRTGYPLVDAAMRQLRATGWMHNRLRMVTAMFLAKH 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +F+  L+DG+ A+NNGGWQWAASTG D+VPYFRIFNP  Q +RFDP G F
Sbjct: 359 LLIDWRHGERFFLHHLVDGEFAANNGGWQWAASTGTDAVPYFRIFNPITQSRRFDPDGRF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           I  WLPEL ++P +  H P     +   +  YP+PIV+H+ A    L  +
Sbjct: 419 IAEWLPELADLPAKERHDPSP---EQRAARRYPMPIVEHRAARARALEAF 465


>gi|88857379|ref|ZP_01132022.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           tunicata D2]
 gi|88820576|gb|EAR30388.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           tunicata D2]
          Length = 475

 Score =  363 bits (931), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 187/458 (40%), Positives = 275/458 (60%), Gaps = 6/458 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L+WLR DLRI DN AL AA  +   +  A+FIATPEQW+QH ++  Q  FI   L  +
Sbjct: 1   MNLMWLRRDLRIDDNPALIAALQSGPTQ--ALFIATPEQWQQHDMAPIQVDFIERHLNLL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++ GI        N+      L  +C  Q+++++F N++ E+NE  RD+ +   L 
Sbjct: 59  AEQLAKYGIPLTVLTVPNYASCTIALKEFCHTQQISQIFANQEVELNECIRDRQI---LA 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    ++  V++P G++      M+ V+TPFR A ++ L Q  +++   P+  LT   
Sbjct: 116 AGLNLTLYEADVIVPKGTVKTGKGDMFHVFTPFRNAWVKQLQQHSIKTSSHPSEVLTH-Y 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                 +      +     +P+      H++ +F + K   Y + RD PA++GTS +SPY
Sbjct: 175 QSIRAEKIVLEATKKSSEKWPLVSDIKKHVMPEFLQTKHADYKQYRDFPALKGTSGVSPY 234

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+IG LS +   +++ +    +L   K+  F WLNEL WR+FY+HL+  YP++  G  F 
Sbjct: 235 LAIGALSSKMLASQVLQHVPFILDNAKADIFCWLNELAWRDFYKHLLFAYPNLIKGITFS 294

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                + W   +    AW +G TG+P++DAAMRQL   GWMHNRLRM+ ASFL K LLVD
Sbjct: 295 EKYSNLNWPNSNEYFIAWCEGRTGYPLVDAAMRQLRQTGWMHNRLRMVVASFLTKHLLVD 354

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+GE++FM  L+DGD ++NNGGWQWAA TG D+ PYFRIFNP  Q ++FDP G+FIR +
Sbjct: 355 WRLGEQFFMQHLIDGDFSANNGGWQWAAGTGCDAQPYFRIFNPITQSEKFDPDGSFIRKY 414

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           LPEL+NVP +YIH PHS+L     S  Y   IV+H +A
Sbjct: 415 LPELSNVPVKYIHLPHSYLAATGQSECYWPAIVEHSQA 452


>gi|70732464|ref|YP_262226.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Pf-5]
 gi|68346763|gb|AAY94369.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Pf-5]
          Length = 481

 Score =  362 bits (930), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 191/472 (40%), Positives = 273/472 (57%), Gaps = 7/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL  +        +AV++ +PEQW  H  +  +  F   +L  +
Sbjct: 1   MQLIWLRSDLRLHDNTAL--SAAAQRGAAVAVYLLSPEQWLAHDDAPCKIDFWLRNLQSL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +  I       + ++ + + L   C Q +V  L +N++Y I+E RRD  + + LQ
Sbjct: 59  STALGRLNIPLLIRSAATWEQAPQVLLELCRQLQVQMLHFNQEYGIHESRRDAAVTRALQ 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           H  I  +   D +L  PGS+L  +   ++V++ FRK     L  A    +  P  +L   
Sbjct: 119 HAGISVQGHLDQLLFQPGSVLTKSGGYFQVFSQFRKVCYSRLHTALPALVKAPGAQLPLS 178

Query: 188 VTPSNIPR---FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P+    F  P QA+  ++P G+  A   L KF  E+++YY  +RD PA  GTSQ
Sbjct: 179 INADPLPQRVEGFPSPTQALRELWPAGDDEAQRRLEKFSDEQIHYYQSERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GV+SPRQC +               GA +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSPYLAAGVISPRQCLHAALRGNQGEFESGSPGAVTWINELLWREFYKHILVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEAVKWRHAPEELAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q ++FD +G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPISQSQKFDSEGRF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           I+HWLP+L  +  + IH P +      +   YP PIVD  ++    L  + A
Sbjct: 419 IKHWLPQLAGLNKKDIHNPAAMGGLFGVP-GYPAPIVDLSRSRERALAAFKA 469


>gi|148546013|ref|YP_001266115.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida F1]
 gi|148510071|gb|ABQ76931.1| Deoxyribodipyrimidine photo-lyase type I [Pseudomonas putida F1]
          Length = 475

 Score =  362 bits (928), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 199/476 (41%), Positives = 274/476 (57%), Gaps = 19/476 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL A+        IA+++ +P QW+ H  +A +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSASTER--GPTIALWLVSPGQWQAHDDAACKVDFWLRNLHDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL +  I         +D + + +   C Q +V  + +N +Y INE RRD      L+
Sbjct: 59  RQSLEKLNIPLLIRTIDTWDQAPQAVLDVCRQHQVQSVHWNEEYGINEQRRDDATRALLE 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185
              I   S+ D +   PG++L  +   ++V++ F+K  +++L     RSLP  A R+   
Sbjct: 119 KSAIQAHSYLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHL----HRSLPALARRVKRQ 174

Query: 186 GPVTPSNIP-----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            P+   + P       F     A+   +P GE  A   L +F  E +  Y   RD+PA  
Sbjct: 175 APLNIGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYQHLRDLPAKP 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYL+ GV+SPRQC +               G  +W+NEL+WREFY+H+++ YP 
Sbjct: 235 GTSQLSPYLAAGVISPRQCLHGALASNRGEFDSGSMGVQTWINELLWREFYKHILSGYPQ 294

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   + F   TE + W      L+AW+QG TGFPIIDAAMRQL   GWMHNRLRMI A F
Sbjct: 295 VSRHRAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMF 354

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDP
Sbjct: 355 LSKNLLIDWRKGERHFMRNLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDP 414

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474
           QG FIRHW+PEL  +  + IH P   +   DL  + +Y  PIVD   +    L  +
Sbjct: 415 QGHFIRHWVPELQALDEKAIHQP---IKSTDLFGNTSYLSPIVDLSSSRQRALEAF 467


>gi|332535427|ref|ZP_08411214.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035151|gb|EGI71663.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 464

 Score =  362 bits (928), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 191/471 (40%), Positives = 276/471 (58%), Gaps = 19/471 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+  N+AL  A +N      A+F  + +QW+QH  +  Q   +   +  +Q 
Sbjct: 4   LFWFRRDLRLFSNEALIQALNNGAKH--AIFFVSEKQWQQHQAAPIQIDLLKRRVAYLQS 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQH 129
            L+  GI     +  +F D    L ++C    V  +  N +YE+NEV RDK +L +  + 
Sbjct: 62  QLADYGITLHIIEAPSFCDCTRELINFCKANDVKHVIANTEYELNEVNRDKAILHECDEL 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +    ++  ++ P G++ N + +MYKV+TPF++A ++        SLP        P+T
Sbjct: 122 SITFTLYEGDLIAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHF-SLP------QWPLT 174

Query: 190 PSNIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               P  FD             +P+ ++    ++  F  +K+  Y +QRDIP+++GTS L
Sbjct: 175 SD--PIEFDESDLLKSDGCSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIPSVKGTSGL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++G++S +Q    +++ + D+L   KS  F+W+NEL+WREFYRHL+A +P +  G 
Sbjct: 233 SPYLALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELVWREFYRHLIAEFPKLSRGD 292

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F      + W K     +AW +G TG+P++DAAM QL   GWMHNRLRM+ ASFL K L
Sbjct: 293 NFNEKYNAVVWRKSESDFKAWCEGRTGYPLVDAAMLQLKQTGWMHNRLRMVVASFLTKHL 352

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGDLASNNGGWQWAASTG D+ PYFR+FNP  Q +RFDP G FI
Sbjct: 353 LIDWREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPIRQSERFDPTGKFI 412

Query: 426 RHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQY 474
           R +LPEL NVP ++IH PH++L     D    +P  IVDHK A    L  +
Sbjct: 413 RKYLPELENVPDKHIHFPHTYLAATGKDKECYWP-AIVDHKAARERALAAF 462


>gi|313497105|gb|ADR58471.1| PhrB [Pseudomonas putida BIRD-1]
          Length = 480

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 198/484 (40%), Positives = 280/484 (57%), Gaps = 20/484 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL A+      + IA+++ +P QW+ H  +  +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSASTER--GQTIALWLVSPGQWQAHDDADCKVDFWLRNLHDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL +  I         +D + + +   C Q +V  + +N +Y INE RRD      L+
Sbjct: 59  RQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRALLE 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185
              I   S+ D +   PG++L  +   ++V++ F+K  +++L     RSLP  A R+   
Sbjct: 119 KSAIQAHSYLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHL----HRSLPALARRVKRQ 174

Query: 186 GPVTPSNIP-----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            P+   + P       F     A+   +P GE  A   L +F  + +  Y   RD+PA  
Sbjct: 175 APLNIGSDPIPQHVEGFGKTTHALRDHWPAGEAEAQSRLSRFLDDTIDDYHHLRDLPAKP 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYL+ GV+SPRQC +              +G  +W+NEL+WREFY+H+++ YP 
Sbjct: 235 GTSQLSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSGYPQ 294

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   + F   TE + W      L+AW+QG TGFPIIDAAMRQL   GWMHNRLRM+ A F
Sbjct: 295 VSRHRAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMF 354

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDP
Sbjct: 355 LSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDP 414

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYA-A 477
           QG FIRHW+PEL  +  + IH P   +   DL  + +Y  PIVD   +    L  +   A
Sbjct: 415 QGQFIRHWVPELQELDEKAIHQP---IKPTDLFGNTSYLSPIVDLSSSRQRALEAFKGLA 471

Query: 478 KKQS 481
           ++Q+
Sbjct: 472 RRQN 475


>gi|209809629|ref|YP_002265168.1| deoxyribodipyrimidine photo-lyase (photoreactivating enzyme)
           [Aliivibrio salmonicida LFI1238]
 gi|208011192|emb|CAQ81620.1| deoxyribodipyrimidine photo-lyase (photoreactivating enzyme)
           [Aliivibrio salmonicida LFI1238]
          Length = 479

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 209/482 (43%), Positives = 282/482 (58%), Gaps = 17/482 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +   VW R DLRI DN AL AA  N +   IA+++ +  QW++H  S+ Q   I   LL+
Sbjct: 6   TTQCVWFRTDLRIADNPALSAALANQEP-TIALYVVSEAQWKKHHKSSIQIDLIKRRLLE 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K L +  +      C  F ++ E L   C    +T LF N++YE +E+ RD  +  +L
Sbjct: 65  LEKELQEINVPLIIVSCPWFKNTSEQLTMLCNDLNITHLFANKEYEADELARDADVRSQL 124

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQNL--VQADLRSLPVPA 181
            + +    ++    +  G I+N   + YKV+TPF+KA      Q+   ++  + S+P+  
Sbjct: 125 TN-IESHFYNAKCAVTVGKIINKTQKPYKVFTPFKKAWRAYFYQHFPTIEKVIPSVPLSE 183

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +L+     S + R F         ++P+     L  +R FC+EK   Y +QRD PAI G
Sbjct: 184 QQLS--TLTSYLDRKFTSSMNNESKVWPVSNTAILKKMRLFCREKSQDYHDQRDYPAIDG 241

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQ+SPYL+IG LS +QC  RL  E  + L     G   WL+ELIWREFY HL+ F+PS+
Sbjct: 242 TSQISPYLAIGALSAKQCILRLHLEANNQL---SQGQEIWLDELIWREFYTHLLYFFPSL 298

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                F+ + + I+WN      + W  G TG+PI+DAAM+QLNT GWMHNRLRMITASFL
Sbjct: 299 SKNHAFLDFEKHIQWNNKQDQFEQWCNGETGYPIVDAAMKQLNTTGWMHNRLRMITASFL 358

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDL +DWR GE+YFMS L+DGD ASNNGGWQW AS G DS PYFRIFNPT Q +RFD  
Sbjct: 359 VKDLHIDWRWGEQYFMSTLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPTTQSERFDNN 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           G FI++WLP L  +  + +H P    L K D   NY  PIVDH      TL  Y  AK Q
Sbjct: 419 GVFIKYWLPNLAALLGKQLHQPSVKPLLKPD---NYVDPIVDHSVQRLKTLELYKQAKIQ 475

Query: 481 SL 482
            +
Sbjct: 476 DV 477


>gi|77362362|ref|YP_341936.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877273|emb|CAI89490.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 468

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 191/467 (40%), Positives = 273/467 (58%), Gaps = 7/467 (1%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+  N+AL  A +N      A+F    +QW+QH  +  Q   +   +  + +
Sbjct: 4   LFWFRRDLRLFSNEALIQALNNGANH--AIFFICEKQWQQHQAAPIQIDLLKRRITYLHQ 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQH 129
            L+  GI         F D    L  +C    V  +  N +YE+NEV RDK +L K  + 
Sbjct: 62  QLADHGITLHIIDAPYFADCETQLIDFCKANNVKHVIANTEYELNEVNRDKAILAKCDEL 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PAIRLTGPV 188
            +    ++  ++ P GS+ N + +MYKV+TPF++A ++  ++    SLP  P   ++G  
Sbjct: 122 SITFTLYEGDLIAPVGSVKNQSNEMYKVFTPFKRAWLKQYIEVHF-SLPQWPVEHVSGGA 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             S           +    +P+ ++    ++  F  +K+  Y + RDIP+I+GTS LSPY
Sbjct: 181 QLSKNETNL-LKGDSSSEKWPVDDKTLATVVDNFICDKLTSYDDHRDIPSIKGTSGLSPY 239

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L++G++S +Q    +++ + D+L   KS  F+W+NELIWREFYRHL+A +P +  G  F 
Sbjct: 240 LALGIISTKQLLINIQQRYPDILSTSKSKTFTWVNELIWREFYRHLIAQFPKLSRGDNFN 299

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                + W       +AW +G TG+P++DAAMRQL   GWMHNRLRM+ ASFL K LL+D
Sbjct: 300 EKYNAVVWRSSDDDFKAWCEGRTGYPLVDAAMRQLLQTGWMHNRLRMVVASFLTKHLLID 359

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE +FM  L+DGDLASNNGGWQWAASTG D+ PYFR+FNP  Q +RFDP G FIR +
Sbjct: 360 WRKGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPIRQSERFDPNGEFIRKY 419

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLP-IVDHKKACHHTLNQY 474
           +PEL NVP ++IH PHS+L     S +   P IVDHK A    L  +
Sbjct: 420 IPELENVPDKHIHFPHSYLASLGQSDSCYWPAIVDHKAARERALAAF 466


>gi|26987475|ref|NP_742900.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida KT2440]
 gi|24982139|gb|AAN66364.1|AE016264_8 deoxyribodipyrimidine photolyase [Pseudomonas putida KT2440]
          Length = 480

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 197/476 (41%), Positives = 272/476 (57%), Gaps = 19/476 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL A+        IA+++ +P QW+ H  +  +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSASTER--GPTIALWLVSPGQWQAHDDADCKVDFWLRNLHDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL +  I         +D + + +   C Q +V  + +N +Y INE RRD      L+
Sbjct: 59  RQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRAMLE 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185
              I   S  D +   PG++L  +   ++V++ F+K  +++L     RSLP  A R+   
Sbjct: 119 KSAIQAHSHLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHL----HRSLPALARRVKRQ 174

Query: 186 GPVTPSNIP-----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            P+   + P       F     A+   +P GE  A   L +F  E +  Y   RD+PA  
Sbjct: 175 APLNIGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYHHLRDLPAKP 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYL+ GV+SPRQC +              +G  +W+NEL+WREFY+H+++ YP 
Sbjct: 235 GTSQLSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSGYPQ 294

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   + F   TE + W      L AW+QG TGFPIIDAAMRQL   GWMHNRLRM+ A F
Sbjct: 295 VSRHRAFRAQTEALPWRDAPADLAAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMF 354

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDP
Sbjct: 355 LSKNLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDP 414

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474
           QG FIRHW+PEL  +  + IH P   +   DL  + +Y  PIVD   +    L  +
Sbjct: 415 QGRFIRHWVPELQELDEKAIHQP---IKSTDLFGNTSYLSPIVDLSSSRQRALEAF 467


>gi|254489691|ref|ZP_05102887.1| deoxyribodipyrimidine photolyase family [Methylophaga thiooxidans
           DMS010]
 gi|224465100|gb|EEF81353.1| deoxyribodipyrimidine photolyase family [Methylophaga thiooxydans
           DMS010]
          Length = 464

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/472 (41%), Positives = 276/472 (58%), Gaps = 14/472 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVWLRNDLR+ DN A+  A    D  +  VFIATP+QW+QH  SA +     AS+  +
Sbjct: 4   TQLVWLRNDLRLDDNPAISQAQQQGDLHL--VFIATPKQWQQHDESAAKQGLKAASIEDI 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++ G+ F   +   F D  + L ++C Q+ +  +++N++  ++E RRD  +   L+
Sbjct: 62  NQQLAKLGVPFTILETDWFADIPKLLKTFCQQKNIRDIWFNQETPLDERRRDDAVIDVLE 121

Query: 129 H-RVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              V C + D D ++  P  +L    + +KV+TP+ +  +Q L +      PVP  +   
Sbjct: 122 GFGVNCHALDADLIVTVP--VLTQQNEPFKVFTPYYRRWLQILQETQKPPYPVPDKQGEA 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                  P + D      D ++P  E + L  L +FC+ KV  Y + RDIPA  GTS LS
Sbjct: 180 IAVDLLKPGWSD---DYRDDLWPADEASVLKKLSQFCRNKVKAYPKYRDIPAESGTSTLS 236

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYLSIG + PR+    ++    +  +  +     WL EL WR+FYR L+  +P + M KP
Sbjct: 237 PYLSIGRIGPRRLLASIQYHCSEQGLHWQDN--DWLRELAWRDFYRQLLLHFPRLSMEKP 294

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F P T+ + W  D     AW +G TGFPI+DAAMRQL   GWMHNRLRMITASFL K LL
Sbjct: 295 FKPETDNVVWRDDETGFHAWCEGKTGFPIVDAAMRQLQQTGWMHNRLRMITASFLTKLLL 354

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE++FM  LLDG+ A+NNGGWQW+ASTG D+ PYFR+FNPT Q +RFDP G FIR
Sbjct: 355 IDWRRGEQFFMQHLLDGEFAANNGGWQWSASTGVDAAPYFRVFNPTRQSERFDPDGEFIR 414

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            ++PEL  +  + IH P    D+      YP+PI+D+K A    ++ +   K
Sbjct: 415 RFVPELKKLSGKQIHNPS---DQLRTETGYPMPIIDYKPARQTAIDAFADLK 463


>gi|262278230|ref|ZP_06056015.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258581|gb|EEY77314.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           calcoaceticus RUH2202]
          Length = 480

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/468 (41%), Positives = 275/468 (58%), Gaps = 17/468 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ D+ AL+ AC    +  I + I +PEQW+ H  +  + +F    L Q++K
Sbjct: 7   LIWFRQDLRVRDHAALWHACQQGPS--IGLIILSPEQWKIHHDAPIKINFYLRQLQQLKK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L Q  I         + D  +++     Q  +  ++ N +  +NE++RDK++++ L Q 
Sbjct: 65  ELEQLNIPLIIQVIPYWKDIADYISKLAQQLNIENVYSNIEVGVNELKRDKIVQQALNQQ 124

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGPV 188
                 F D  + P  SI N + Q Y+V++ F+KA    L  + L +  P+P  +   P 
Sbjct: 125 SKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYSKLDISGLPQCYPIPEKQNAYPQ 184

Query: 189 TPSNIPR--------FFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           + SNI          FFD   P +  D ++P GE  AL  L  F  + + +Y  +RD P 
Sbjct: 185 SFSNIKSLGLEDIEAFFDSSIPKEQQD-LWPTGEDFALEQLDLFINDHLSHYKLERDFPN 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTSQLSPYL++G+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 VKGTSQLSPYLNLGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+ I+W  +   L AW+ G TG PIIDA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHYPFKKNTQNIKWENNQEHLVAWQNGQTGIPIIDAGMRQLQKTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWR+GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRVGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           DP G +IR W+ EL ++  + IH P+S   K  L LNYP PIVD K+ 
Sbjct: 424 DPNGDYIRQWVNELAHLDNKMIHEPYS--TKTHLQLNYPKPIVDLKET 469


>gi|197336881|ref|YP_002158424.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11]
 gi|197314133|gb|ACH63582.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11]
          Length = 464

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 202/467 (43%), Positives = 269/467 (57%), Gaps = 13/467 (2%)

Query: 18  LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77
           +R  DN AL AA  N      A+F+ +  QW++H  +  Q   I   L++++  L Q  I
Sbjct: 1   MRTIDNPALQAAVENQQP-TFALFVYSESQWKKHNKAPIQIDLIKRRLVELKNELEQLNI 59

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137
                    F +    + +   +  V  LF N++YE +E  RD  + + L +   C  FD
Sbjct: 60  PLIVISSPLFSEIPAKITALFSELSVNALFANKEYEHDERLRDTQVYESLLN-TNCSFFD 118

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197
              +LP G+I+N   Q YKV+TPF+KA   +  Q            L  P     +    
Sbjct: 119 AKCILPVGTIINRTQQPYKVFTPFKKAWKASFYQQQPHITKTERSVLCDPKLIEKLSLNN 178

Query: 198 DYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
           D  F  +       + +  +  + ILR+FC++KV  Y   RD P IQGTSQLSPYL+IG 
Sbjct: 179 DDSFTFLSSNESGSWTVSTKAIIDILRQFCRQKVSQYHNNRDYPEIQGTSQLSPYLAIGA 238

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           +S +QC  RL  E    L     G   WL+ELIWREFY HL+ FYP++   + F+ + + 
Sbjct: 239 ISAKQCALRLHLEANYEL---NQGEDIWLDELIWREFYTHLLHFYPNLSKNQAFLSYDKY 295

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
           IEW+ +    + W +G TGFPI+DAAM+QLNT GWMHNRLRMITASFLVKDL +DWR GE
Sbjct: 296 IEWDNNLDNFERWCKGETGFPIVDAAMKQLNTTGWMHNRLRMITASFLVKDLHIDWRWGE 355

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           +YFMS+L+DGD ASNNGGWQW AS G DS PYFRIFNP  QGK+FD   TFI+HWLPEL 
Sbjct: 356 QYFMSKLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPITQGKKFDADCTFIKHWLPELK 415

Query: 434 NVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            +  + IH P+ + L K+D   NYP  IVDH +     +  Y  AK+
Sbjct: 416 ALSNKEIHHPNPAPLLKSD---NYPDQIVDHAQQRIKVIEVYKQAKQ 459


>gi|315123469|ref|YP_004065475.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp.
           SM9913]
 gi|315017229|gb|ADT70566.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp.
           SM9913]
          Length = 464

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 183/468 (39%), Positives = 273/468 (58%), Gaps = 13/468 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+  N+AL  A +N     I  F    +QW QH  +  Q   +   +  +++
Sbjct: 4   LFWFRRDLRLFSNEALIEALNNGAKHTI--FFVCEKQWAQHNTAPIQIDLLKRRVSYIRE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L++ GI     +   F D    L  +C Q  +  +  N++YE+NE  RDK ++ +  Q 
Sbjct: 62  KLAEYGINLHVIEAPYFTDCQTKLLDFCQQYEIKHIIANKEYELNEFNRDKAIQAQCDQQ 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--VQADLRSLPVPAIRLTGP 187
           ++    ++  ++ P GS+     +MYKV+TPF++A ++        L S P+ +      
Sbjct: 122 QITFTLYEGDIIAPVGSVRTQNNEMYKVFTPFKRAWLKQYQDTHFSLVSWPLSS------ 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             P +I              +P+ +     ++  F  +K+  Y + RDIP+++GTS LSP
Sbjct: 176 -NPIDIESCELLSSDDSSKKWPVDDDTLASVVDNFIHDKLASYDDVRDIPSVKGTSGLSP 234

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL++GV+S +Q    +++++ D+L   KS  F+W+NELIWREFY+HL+A +P +  G  F
Sbjct: 235 YLALGVVSSKQLMVNIQQQYPDILTTSKSKTFTWVNELIWREFYKHLIAEFPKLSRGANF 294

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + + W  +    + W +G TG+P++DAAM+QL   GWMHNRLRM+ ASFL K LL+
Sbjct: 295 NEKYDSVAWRDNEAEFKLWCEGRTGYPLVDAAMQQLLQTGWMHNRLRMVVASFLTKHLLI 354

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE++FM  L+DGDLASNNGGWQWAASTG D+ PYFR+FNP  Q +RFDP G FIR 
Sbjct: 355 DWRKGEQFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPITQSERFDPSGQFIRK 414

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP-IVDHKKACHHTLNQY 474
           +LPEL  VP ++IH PH++L     S +   P IVDHK A    L+ +
Sbjct: 415 YLPELEKVPDKHIHFPHTYLAATGQSEHCYWPAIVDHKAARARALDAF 462


>gi|299769190|ref|YP_003731216.1| deoxyribodipyrimidine photo-lyase [Acinetobacter sp. DR1]
 gi|298699278|gb|ADI89843.1| deoxyribodipyrimidine photo-lyase [Acinetobacter sp. DR1]
          Length = 480

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 198/468 (42%), Positives = 277/468 (59%), Gaps = 17/468 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ D+ AL+ AC    +  I + I +PEQW+ H  +  + +F    L Q++K
Sbjct: 7   LIWFRQDLRVRDHAALWHACQQGPS--IGLVILSPEQWKIHHDAPIKINFYLRQLQQLKK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L +  I         + D  +++     Q  +  ++ N +  +NE++RDK +++ L Q 
Sbjct: 65  ELEKLNIPLIIQVIPYWKDIADYICELTHQLHIENVYSNIEVGVNELKRDKTVQQALNQQ 124

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGPV 188
                 F D  + P  SI N + Q Y+V+  F+KA    L  + L +  P+P  + + P 
Sbjct: 125 GKELFLFHDRTIFPLRSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQKSNPE 184

Query: 189 TPSNIPR--------FFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           + SNI          FFD    +    ++P GE  AL  L  F +  +  Y  +RD P +
Sbjct: 185 SDSNIKSLSLEDIEAFFDSSISKDQQNLWPTGEGFALEQLDVFIENHLSDYKLERDFPNV 244

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +GTSQLSPYL++G+LS RQC   L + E  +  I    G  +WL+EL+WREFY+H++  +
Sbjct: 245 KGTSQLSPYLNLGILSIRQCLQALFRTEHGNFHIA-NEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+WN +   L AW+ G TG PIIDA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIIDAGMRQLQKTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRIGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           DP G +IR W+ EL ++  + IH P+S   K  L LNYP PIVD K+ 
Sbjct: 424 DPNGDYIRQWVDELADLDNKMIHEPYS--SKTPLQLNYPKPIVDLKET 469


>gi|193077986|gb|ABO12900.2| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
           [Acinetobacter baumannii ATCC 17978]
          Length = 480

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 195/470 (41%), Positives = 275/470 (58%), Gaps = 15/470 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  
Sbjct: 4   AYQLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKIGFYLRQLRT 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK L+   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L
Sbjct: 62  LQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYL 121

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLT 185
            +H      F D  + P  SI N + Q Y+V++ F+KA    L  + L +  PVP  +  
Sbjct: 122 NRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNE 181

Query: 186 GP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            P        +    I + F     +    ++P+GEQ AL  L +F +E V +Y  +RD 
Sbjct: 182 VPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKVERDF 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++ 
Sbjct: 242 PNIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILF 301

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V    PF   T+KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMI
Sbjct: 302 DFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDAGMRQLLQTGWMHNRVRMI 361

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K
Sbjct: 362 TAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPITQSK 421

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           +FDP+G +IR W+ EL ++  + IH P+S   K DL LNYP PIVD K+ 
Sbjct: 422 KFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKET 469


>gi|239501100|ref|ZP_04660410.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AB900]
          Length = 480

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 195/470 (41%), Positives = 276/470 (58%), Gaps = 15/470 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  
Sbjct: 4   AYQLIWFRQDLRIHDHAALWHASQQGTS--LGLVILSPEQWKQHADAPIKISFYLRQLRT 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK L+   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L
Sbjct: 62  LQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYL 121

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLT 185
            +H      F D  + P  SI N + Q Y+V++ F+KA    L  + L +  PVP  +  
Sbjct: 122 NRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNE 181

Query: 186 GP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            P        +    I + F     +    ++P+GEQ AL  L +F +E V +Y  +RD 
Sbjct: 182 VPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALDQLDQFIEESVCHYKLERDF 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P IQGTS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++ 
Sbjct: 242 PHIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILF 301

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V    PF   T+KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMI
Sbjct: 302 DFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMI 361

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIF+P  Q K
Sbjct: 362 TAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFHPIAQSK 421

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           +FDP+G +IR W+ EL ++  + IH P+S   K DL LNYP PIVD K+ 
Sbjct: 422 KFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKET 469


>gi|114564201|ref|YP_751715.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB
           400]
 gi|114335494|gb|ABI72876.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina
           NCIMB 400]
          Length = 477

 Score =  356 bits (913), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 197/477 (41%), Positives = 269/477 (56%), Gaps = 15/477 (3%)

Query: 11  LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W R DLR+ DN AL AAC    ++   V AV+  TP QW QH ++  Q  FI   +  
Sbjct: 7   LMWFRQDLRVADNPALVAACEFASSNRGHVRAVYFVTPAQWAQHDVAPIQIDFIQRHVNL 66

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + ++L+  GI        +FD+    L +Y  Q  +  ++   + EINE RRD+ L   +
Sbjct: 67  LAQALAVLGIHLDVLHAQDFDEVQTLLAAYIAQHDIAAVYAANEPEINERRRDRAL---I 123

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V     D   +L  G + N A  MYKV++PF K       Q  +  + VPA      
Sbjct: 124 DSGVPLTLIDQDCVLAAGQVKNLAGDMYKVFSPFAKKWKSIAGQRAIVPVAVPAPIAAVL 183

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            TP+ +   F+  ++     +P GE  A  IL +F   +V  Y  +RD PA++GTS+LSP
Sbjct: 184 ATPNEV--VFNC-YKMSSEQWPAGEGAAKRILDQFLANQVADYQAERDFPALEGTSRLSP 240

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L+IGV+S RQC   +   +   L++    A +WLNELIWREFYRHL+  +P + M   F
Sbjct: 241 FLAIGVISSRQCVAAILARYPQALVEDTCPAKTWLNELIWREFYRHLLVAFPRLSMNHNF 300

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + I W  +     AW  G TG+PIIDAAMRQLN  GWMHNRLRM+ ASFL K LLV
Sbjct: 301 NELGDGIVWRNNLAEFTAWCDGQTGYPIIDAAMRQLNQTGWMHNRLRMVVASFLTKHLLV 360

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YF  +L+DGDLA+NNGGWQW+A TG D+ PYFR+FNP  Q  +FDP  +FI+ 
Sbjct: 361 DWRWGERYFRQKLIDGDLAANNGGWQWSAGTGCDAQPYFRVFNPMTQSSKFDPDASFIKR 420

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDL-----SLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++ EL+      IH P + ++ NDL        YP PIV+HK A    +    A K+
Sbjct: 421 YVSELSAWSLADIHQPKT-INVNDLFAQRQDDRYPQPIVEHKMARLRAIEVLSALKR 476


>gi|260549666|ref|ZP_05823883.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp.
           RUH2624]
 gi|260407183|gb|EEX00659.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp.
           RUH2624]
          Length = 480

 Score =  355 bits (912), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 195/467 (41%), Positives = 279/467 (59%), Gaps = 15/467 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLRI D+ AL+ AC    +  I + I +PEQW+QH  +  +  F    L ++QK
Sbjct: 7   LIWFRQDLRIHDHAALWHACQQGPS--IGLVILSPEQWKQHDDAPIKISFYLRQLKELQK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L+   I         ++D+ +++  +  +  +  ++ N +   NE++RDK ++  L + 
Sbjct: 65  ELASLHIPLVIQVIPYWEDTAKFISDFSKKYNIENVYANIEMGANELKRDKTVQDSLNKE 124

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVP----AIRL 184
                 F D  + P  SI N + Q Y+V++ F+KA    L  + L +  P+P     I L
Sbjct: 125 SKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYAKLNTSGLPQCFPLPHKQNEISL 184

Query: 185 T----GPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  V  + I + F     +    ++P+GE  AL  L +F ++ V +Y  +RD P +
Sbjct: 185 EFLDEKSVDLAEIEKLFCSSISKEQQDLWPVGESYALEQLDQFVEDSVSHYKVERDFPHV 244

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS+LSPYL+IG+LS RQC   L             G  +WL+ELIWREFY+H++  +P
Sbjct: 245 HGTSKLSPYLNIGILSVRQCLQALFRNQHGNFHLDNEGQQTWLDELIWREFYQHILFDFP 304

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V    PF   T+KI+WN +   L+AW+ G TG PI+DA MRQL   GWMHNR+RMITA 
Sbjct: 305 YVSKHLPFKKDTQKIKWNHNPEHLKAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITAM 364

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q ++FD
Sbjct: 365 FLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPISQSQKFD 424

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           P G +IR W+ EL ++  + IH P+S  +K +LSLNYP PIVD K+ 
Sbjct: 425 PNGDYIRKWVKELAHLDNKSIHDPYS--NKINLSLNYPKPIVDLKET 469


>gi|184159014|ref|YP_001847353.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU]
 gi|332874793|ref|ZP_08442663.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059]
 gi|183210608|gb|ACC58006.1| Deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU]
 gi|322508994|gb|ADX04448.1| Deoxyribodipyrimidine photolyase Photoreactivation [Acinetobacter
           baumannii 1656-2]
 gi|323518978|gb|ADX93359.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737054|gb|EGJ68011.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059]
          Length = 480

 Score =  355 bits (912), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 195/470 (41%), Positives = 275/470 (58%), Gaps = 15/470 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  
Sbjct: 4   AYQLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRT 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK L+   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L
Sbjct: 62  LQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDYL 121

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLT 185
            +H      F D  + P  SI N + Q Y+V++ F+KA    L  + L +  PVP  +  
Sbjct: 122 NRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNKQNE 181

Query: 186 GP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            P        +    I + F     +    ++P+GEQ AL  L +F +E V +Y  +RD 
Sbjct: 182 VPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKVERDF 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++ 
Sbjct: 242 PHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILF 301

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V    PF   T+KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMI
Sbjct: 302 DFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMI 361

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K
Sbjct: 362 TAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSK 421

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           +FDP+G +IR W+ EL ++  + IH P+S   K DL LNYP PIVD K+ 
Sbjct: 422 KFDPEGEYIRQWIKELTHLDNKTIHDPYS--SKTDLGLNYPKPIVDLKET 469


>gi|311106052|ref|YP_003978905.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8]
 gi|310760741|gb|ADP16190.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8]
          Length = 472

 Score =  355 bits (912), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 197/468 (42%), Positives = 276/468 (58%), Gaps = 9/468 (1%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+WLR DLR  DN AL AA       V A+F+A P QWR HG +  +  F   +L ++ +
Sbjct: 4   LLWLRTDLRAHDNPALAAAAEAG--TVTALFLAAPGQWRLHGDAPTKVDFWLRNLRELSR 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L + GI  +     ++ ++ + L  +C    + ++  N ++ +NE RRD  +  RLQ  
Sbjct: 62  ELGRLGIPLRLLTVPDWSNAPDALADFCRTHAIGQVHANAEWAVNERRRDAAVAARLQAL 121

Query: 131 VICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +    + LL PG++L    + Y+VYTP+ +A  + L  A LR+LP P  +   P  
Sbjct: 122 GVDWTLHHGASLLRPGTVLTGKGECYRVYTPYARACRERLRTAPLRALPAPRAQTPPPWP 181

Query: 190 PSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              +P     F+ P   +  ++P GE  A   L  F    +  Y EQRD P++  TS LS
Sbjct: 182 ADPLPAAFEGFEAPADPVRALWPAGEDAASERLEAFADGVIDAYQEQRDFPSLPATSCLS 241

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ GVLSP Q            +   K GA +W+NEL+WREFY+HL+A +PS+ M +P
Sbjct: 242 PYLAAGVLSPGQALRAALAANHGEVDGGKRGAATWINELLWREFYQHLLAAHPSLSMHQP 301

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P T  + W      L+AW+QG TG PI+DAAMRQL  +GWMHNRLRM+TA FL K+LL
Sbjct: 302 MKPETAAVPWRDAPDDLRAWQQGQTGIPIVDAAMRQLLALGWMHNRLRMVTAMFLSKNLL 361

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE +FM+QL+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q ++FDP G F+R
Sbjct: 362 IDWRLGEAWFMAQLVDGDLAANNGGWQWSASTGADAVPYFRIFNPLSQSRKFDPDGVFLR 421

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            WLPEL ++ ++ IH P            YPL IVD  ++    L  +
Sbjct: 422 EWLPELAHLDSRAIHDPSP---MERAQAGYPLAIVDLAQSRLRALEAF 466


>gi|260556618|ref|ZP_05828836.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           baumannii ATCC 19606]
 gi|260409877|gb|EEX03177.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           baumannii ATCC 19606]
          Length = 480

 Score =  355 bits (911), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 196/470 (41%), Positives = 275/470 (58%), Gaps = 15/470 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  
Sbjct: 4   AYQLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKIGFYLRQLRT 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK L+   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L
Sbjct: 62  LQKELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYL 121

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLT 185
            +H      F D  + P  SI N + Q Y+V++ F+KA    L  + L +  PVP  +  
Sbjct: 122 NRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNE 181

Query: 186 GP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            P        +    I + F     +    ++P+GEQ AL  L +F +E V +Y  +RD 
Sbjct: 182 VPLDFLQGKNIDLDEIEKLFCPSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKLERDF 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P IQGTS+LSPYL+IG+LS RQC   L             G   WL+EL+WREFY+H++ 
Sbjct: 242 PHIQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQIWLDELLWREFYQHILF 301

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V    PF   T+KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMI
Sbjct: 302 DFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRIRMI 361

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K
Sbjct: 362 TAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSK 421

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           +FDP+G +IR W+ EL ++  + IH P+S   K DL LNYP PIVD K+ 
Sbjct: 422 KFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKET 469


>gi|293609792|ref|ZP_06692094.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
 gi|292828244|gb|EFF86607.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
          Length = 480

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 196/468 (41%), Positives = 274/468 (58%), Gaps = 15/468 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ D+ AL+ A  +     I + I +PEQW+ H  +  + +F    L Q++
Sbjct: 6   QLIWFRQDLRVRDHAALWHA--SQQGPCIGLIILSPEQWKMHHDAPIKINFYLRQLQQLK 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K L Q  I         + D  +++     Q  +  ++ N +  +NE++RDK ++  L Q
Sbjct: 64  KELEQLNIPLIIQVIPYWKDIADYIGELSTQLNIENVYSNIEIGVNELKRDKTVQDFLNQ 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGP 187
                  F D  + P  SI N + Q Y+V+  F+KA    L  + L +  P+P  + + P
Sbjct: 124 QGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQSSYP 183

Query: 188 --------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   +T  +I  FFD    +    ++P GE  AL  L  F K+++  Y  +RD P 
Sbjct: 184 ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDRLSDYKLERDFPN 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTSQLSPYL+IG+LS RQC   L             G  +WL+ELIWREFY+H++  +
Sbjct: 244 VRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELIWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+WN +   L AW+ G TG PIIDA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLIAWQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWR+GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           DP G +IR W+ EL ++  + IH P+S   K ++ LNYP PIVD K+ 
Sbjct: 424 DPNGDYIRQWVEELAHLDNKAIHEPYS--TKTNIQLNYPKPIVDLKET 469


>gi|312958863|ref|ZP_07773382.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6]
 gi|311286633|gb|EFQ65195.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6]
          Length = 480

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 186/470 (39%), Positives = 265/470 (56%), Gaps = 7/470 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL+WLR DLR+ DN AL AA       V AV++ TPEQWR H  +  +  F   +L ++
Sbjct: 1   MHLIWLRTDLRLHDNTALAAASQR--GPVAAVYLITPEQWRAHDDAPCKVDFWLRNLQRL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +  I       + +      +   C +  V  +  N +Y I+E RRD  + ++L+
Sbjct: 59  SLALGELNIPLLIRSAATWQQVPAVVSELCRELSVKSVHVNEEYGIHENRRDAAVAQQLE 118

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V    + D +L  PGS+L      ++V++ FRK     L  A  R +  P  +    
Sbjct: 119 ACGVTFHRYLDQLLFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRIVATPKAQQKLA 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +P+    F+ P   +  ++P GE  A   L  F ++++ YY ++RD PA  GTSQ
Sbjct: 179 FNSDPVPQTVDGFEPPSDCLRALWPAGEDEARRRLDAFAEQQISYYKDERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +   +           G  +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSAYLAAGVVSPRQCLHAALQSNQGEFESGDIGTITWINELLWREFYKHILVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE + W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEAVAWRHAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIF+P  Q ++FD  G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSEKFDSDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           I+HWLPEL  +  + +H P +      ++ +YP  IVD KK+    L  +
Sbjct: 419 IKHWLPELAALNKKDVHNPEAVGGLFGMA-DYPRAIVDLKKSRERALAAF 467


>gi|332529962|ref|ZP_08405912.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
 gi|332040435|gb|EGI76811.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
          Length = 501

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 194/459 (42%), Positives = 265/459 (57%), Gaps = 13/459 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLRNDLR+ DN AL+AA       VIAV++       +  I+  +  F    L  +  
Sbjct: 4   LVWLRNDLRLHDNPALHAAAELRQG-VIAVYVHCDAYVTRFPIAPSRLDFARRHLHLLTT 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++  I  Q  + +   +    L        ++  F+N +Y ++E+ RD+ + + L+ +
Sbjct: 63  ELARHHIALQVLRVAQVSEIAPALARLARDHGISHCFFNAEYPLDELNRDQQVNQLLRAQ 122

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V  K   D V++PPG + N A   YKV+TP+++  +Q      LR +  PA +   P  
Sbjct: 123 GVTVKRCHDRVVIPPGKVRNEAGTPYKVFTPYKRKWLQLASLLPLRPVEAPAHQAALPC- 181

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           PS   +  D+ F+      +   +P GE  A   L++F  + + +Y  QRD+PA+ GTS 
Sbjct: 182 PSASAQDIDHLFEGQELRDLSTPWPAGEAVARARLQRFVAQDLDHYQTQRDLPAVAGTSG 241

Query: 245 LSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           LSPYL+IG LSPRQ     L     D      +G  +W++ELIWREFY+HL+  YP VCM
Sbjct: 242 LSPYLAIGALSPRQALAAVLSRTGGDW--NANAGVSTWISELIWREFYQHLVVDYPQVCM 299

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +     TE   W +       W+QG TG PIIDAAMRQLN  GWMHNRLRM+ A FL K
Sbjct: 300 HRAMQVHTEAFPWRQAPEDFALWRQGRTGIPIIDAAMRQLNATGWMHNRLRMLVAMFLTK 359

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L +DWR GE YFM QL+DGD A+NNGGWQW+ASTG D+ PYFRIFNP  Q +RFDP+G 
Sbjct: 360 NLQIDWRWGERYFMEQLIDGDFAANNGGWQWSASTGTDAAPYFRIFNPITQSQRFDPRGQ 419

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           FIR W+PEL  +  + IHAPH  L  +     YP P+VD
Sbjct: 420 FIRLWVPELAGLSDKAIHAPH--LAPSGPPPGYPAPMVD 456


>gi|93005295|ref|YP_579732.1| deoxyribodipyrimidine photolyase [Psychrobacter cryohalolentis K5]
 gi|92392973|gb|ABE74248.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter
           cryohalolentis K5]
          Length = 541

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 204/507 (40%), Positives = 278/507 (54%), Gaps = 50/507 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           +L+W R DLR+ DN AL A C  ++   A++ AVF  TPEQW+ H +S  Q   I  +L 
Sbjct: 24  YLMWFRRDLRVHDNTALAAICERANEDNAQLSAVFFLTPEQWQAHDMSLTQLDHIARTLP 83

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L Q  I+     C +F D I  L + C    ++ +  N +YE NEV RD+LL K+
Sbjct: 84  ILAEKLHQLNIILTVQVCPSFTDCIVTLSALCESNNISCVMANHEYEGNEVARDELLTKQ 143

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--- 182
           L +  I    + D  +LPP SI  +   MY+V+TPF K     L  +D++     AI   
Sbjct: 144 LANNEIEFIRWHDQCILPPKSITTNDDSMYQVFTPFYKKWRHTLEVSDIQIHTALAIIDN 203

Query: 183 ---RLTGPVTPSNIPR---------FFDY--------PFQAIDP---------MFPIGEQ 213
               LT     +N  +           DY         +Q ID           +P GE 
Sbjct: 204 KQVNLTLSEHSANTTQDIEALCKKTVHDYQEYLQTHESYQNIDTDKQISQARLAYPAGEA 263

Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW-------NRLKEE 266
            A H L  F  + +  Y   RD+P++Q TSQLS YL+IG +SPR C+        +L+  
Sbjct: 264 EACHRLEHFIADDIDNYDVSRDVPSLQATSQLSTYLTIGAISPRLCYLQATQALGKLRRN 323

Query: 267 FVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDSHLLQ 324
             D      +   + W++EL WR+FYRH++ + P +   + +   T+K I W+ D     
Sbjct: 324 DGDNFDSGDNNDINRWISELAWRDFYRHVLDYKPELIRHQAYKYETDKKINWSYDEDAFA 383

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           AW++G TG P++DAAMR LN  G+MHNRLRM+TA FL KDLL+DWR GE YFM QL+DGD
Sbjct: 384 AWREGKTGVPLVDAAMRCLNATGFMHNRLRMVTAMFLTKDLLIDWRWGERYFMQQLIDGD 443

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            ASNNGGWQW+ASTG DS PYFRI NP  Q K  D +G FI+ WLPEL  +PT  +H   
Sbjct: 444 FASNNGGWQWSASTGTDSAPYFRIMNPFSQAKSHDTEGIFIKTWLPELKPIPTSILHRED 503

Query: 445 SW---LDKNDL--SLNYPLPIVDHKKA 466
                L KN     ++YP+PIV+HK A
Sbjct: 504 KMRKALSKNGTFADIDYPVPIVEHKLA 530


>gi|126665160|ref|ZP_01736143.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
 gi|126630530|gb|EBA01145.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
          Length = 488

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 199/488 (40%), Positives = 273/488 (55%), Gaps = 24/488 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAK----VIAVFIATPEQWRQHGISARQSHFIYAS 64
             LVW RNDLR  DN AL AAC ++       V A FI T EQW  H  SA + H +   
Sbjct: 2   TQLVWFRNDLRAADNPALAAACQSAAQSSGEPVEACFIVTTEQWLSHDWSAAKVHLMLDH 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
              + + L++ GI   + + ++F+ S+  L+++C   +++++ +N +Y +NE RRDK L+
Sbjct: 62  ADALAQELAKLGIALSFLRAADFEQSLSTLEAFCRDHKISQVHFNEEYGVNERRRDKALK 121

Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--QNLVQADLRSLPVPA 181
            R     V    + D   +P G +L    + Y V+TPF +     Q   Q  L ++P   
Sbjct: 122 PRFDTLGVKVSKYRDQAAVPVGEVLTQQSEPYSVFTPFSRRWRSWQEEQQPALLAVPKKV 181

Query: 182 IRLTGPVTPSN-----IPRFFDYPFQAIDPMFPIGEQNALH-ILRKFCKEKVYYYVEQRD 235
                     N     + +  D  F    P      +NA H  L+ F +E+   Y   RD
Sbjct: 182 GEALAGADVKNSSSVILKKEVDALFGEAPPALVATGENAAHDALQDFLQERAGDYKNDRD 241

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQC----WNRLKEEFVDLLIKP---KSGAFSWLNELIWR 288
            PAI+GTS+LSPYL+IG LS RQC    W +LK+       K    + G F+W  EL WR
Sbjct: 242 FPAIEGTSKLSPYLAIGALSGRQCVQAAW-QLKQSMGSSFGKAANDEEGFFTWETELAWR 300

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +FY H++   P V M + F P TE ++WN      +AWK G TG P++DAAMRQLN   W
Sbjct: 301 DFYIHILYHCPRVSMHRAFKPETEALQWNTADEHFEAWKNGRTGIPMVDAAMRQLNETSW 360

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM+ A FL K+L +DWR GE YFMS+L DG LASNNGGWQW+ASTG D+ PYFR+
Sbjct: 361 MHNRLRMVAAMFLTKNLFIDWRRGEAYFMSKLADGYLASNNGGWQWSASTGTDASPYFRV 420

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           FNP  QG+RFD  G FIRHW+PEL  + ++ IH P        +   YP PIVD K++  
Sbjct: 421 FNPMTQGERFDADGEFIRHWVPELAKLDSKRIHNPGK---GGVIPGGYPRPIVDLKESRK 477

Query: 469 HTLNQYYA 476
             + ++ A
Sbjct: 478 EAIARFQA 485


>gi|169795130|ref|YP_001712923.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Acinetobacter baumannii AYE]
 gi|169148057|emb|CAM85920.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Acinetobacter baumannii AYE]
          Length = 498

 Score =  352 bits (903), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 196/475 (41%), Positives = 277/475 (58%), Gaps = 17/475 (3%)

Query: 5   TAMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           T MS    L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F  
Sbjct: 17  TCMSNAYQLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYL 74

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L  +QK LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK 
Sbjct: 75  RQLRTLQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKT 134

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVP 180
           ++  L +H      F D  + P  SI N + Q Y+V++ F+KA    L  + L +  PVP
Sbjct: 135 VQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVP 194

Query: 181 AIRLTGP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
             +   P        +    I + F     +    ++P+GEQ AL  L +F ++ V +Y 
Sbjct: 195 NKQNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYK 254

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            +RD P IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY
Sbjct: 255 VERDFPHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFY 314

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P V    PF   ++KI+WN +   L AW+ G TG PI+DA MRQL   GWMHN
Sbjct: 315 QHILFDFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHN 374

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP
Sbjct: 375 RVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNP 434

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
             Q K+FDP+G +IR W+ EL ++  + IH P+S   K+DL LNY  PIVD K+ 
Sbjct: 435 IAQSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKET 487


>gi|301345220|ref|ZP_07225961.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB056]
 gi|301596996|ref|ZP_07242004.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB059]
          Length = 480

 Score =  352 bits (903), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 193/467 (41%), Positives = 274/467 (58%), Gaps = 15/467 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  +QK
Sbjct: 7   LIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L +H
Sbjct: 65  ELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNRH 124

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGP- 187
                 F D  + P  SI N + Q Y+V++ F+KA    L  + L +  PVP  +   P 
Sbjct: 125 GKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNKQNEVPL 184

Query: 188 -------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    I + F     +    ++P+GEQ AL  L +F ++ V +Y  +RD P I
Sbjct: 185 DFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDFPHI 244

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           Q TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++  +P
Sbjct: 245 QATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDFP 304

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V    PF   ++KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMITA 
Sbjct: 305 HVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITAM 364

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+FD
Sbjct: 365 FLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKFD 424

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           P+G +IR W+ EL ++  + IH P+S   K+DL LNY  PIVD K+ 
Sbjct: 425 PEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKET 469


>gi|325123018|gb|ADY82541.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 480

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/468 (41%), Positives = 275/468 (58%), Gaps = 15/468 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ D+ AL+ A  +     I + I +PEQW+ H  +  + +F    L Q++
Sbjct: 6   QLIWFRQDLRVRDHAALWHA--SQQGPCIGLIILSPEQWQTHHDAPIKINFYLRQLQQLK 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K L Q  I         + D  +++    +Q  +  ++ N ++ +NE++RDK ++  L Q
Sbjct: 64  KELEQLNIPLIIQVIPYWKDIADYIGELSIQLNIENVYSNIEFGVNELKRDKTVQDFLNQ 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGP 187
                  F D  + P  SI N + Q Y+V+  F+KA    L  + L +  P+P  + + P
Sbjct: 124 QGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQSSYP 183

Query: 188 --------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   +T  +I  FFD    +    ++P GE  AL  L  F K+ +  Y  +RD P 
Sbjct: 184 ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDHLSDYKLERDFPN 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTSQLSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 VRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+W+ +   L AW+ G TG PIIDA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKNTQKIKWSHNPEHLTAWQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K++L+DWR+GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNMLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           DP G +IR W+ EL ++  + IH P+S   K ++ LNYP PIVD K+ 
Sbjct: 424 DPNGDYIRQWVQELAHLDNKAIHEPYS--TKTNIQLNYPKPIVDLKET 469


>gi|215482677|ref|YP_002324873.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii
           AB307-0294]
 gi|301511002|ref|ZP_07236239.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB058]
 gi|213987651|gb|ACJ57950.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii
           AB307-0294]
          Length = 480

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/470 (41%), Positives = 275/470 (58%), Gaps = 15/470 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  
Sbjct: 4   AYQLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRT 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L
Sbjct: 62  LQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYL 121

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLT 185
            +H      F D  + P  SI N + Q Y+V++ F+KA    L  + L +  PVP  +  
Sbjct: 122 NRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNE 181

Query: 186 GP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            P        +    I + F     +    ++P+GEQ AL  L +F ++ V +Y  +RD 
Sbjct: 182 VPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDF 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++ 
Sbjct: 242 PHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILF 301

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V    PF   ++KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMI
Sbjct: 302 DFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMI 361

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K
Sbjct: 362 TAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSK 421

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           +FDP+G +IR W+ EL ++  + IH P+S   K+DL LNY  PIVD K+ 
Sbjct: 422 KFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKET 469


>gi|226326776|ref|ZP_03802294.1| hypothetical protein PROPEN_00636 [Proteus penneri ATCC 35198]
 gi|225204613|gb|EEG86967.1| hypothetical protein PROPEN_00636 [Proteus penneri ATCC 35198]
          Length = 256

 Score =  350 bits (899), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 164/251 (65%), Positives = 190/251 (75%)

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           +Y + RDIPA+ GTS+LSPYLSIG+LS RQC+NRL +   + L    SGAF W NELIWR
Sbjct: 3   HYAKWRDIPAVDGTSRLSPYLSIGLLSIRQCFNRLYQTEPNFLENNTSGAFVWFNELIWR 62

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EFY+HL+   P++C    F  WTEKI W  +     AW QG TGFPIIDAAMRQLN  GW
Sbjct: 63  EFYQHLIVANPNLCKHIAFQLWTEKINWRNNQDEFNAWTQGSTGFPIIDAAMRQLNQTGW 122

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM+TASFL+KDLL+DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRI
Sbjct: 123 MHNRLRMLTASFLIKDLLIDWRWGERYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRI 182

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           FNPT QG++FDP G FIRHWLPEL +VP++YIH PH W  K +  L+YPLPIVDH KA  
Sbjct: 183 FNPTTQGRKFDPDGEFIRHWLPELASVPSRYIHTPHEWAAKTNNPLDYPLPIVDHAKARI 242

Query: 469 HTLNQYYAAKK 479
             +  Y   KK
Sbjct: 243 RAIESYEKDKK 253


>gi|330811712|ref|YP_004356174.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379820|gb|AEA71170.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 483

 Score =  348 bits (894), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 190/472 (40%), Positives = 275/472 (58%), Gaps = 11/472 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA   +    +AV++ +PEQWR H  +  +  F   +L  +
Sbjct: 1   MQLIWLRSDLRLHDNTALAAA--AAQGPCVAVYLTSPEQWRAHDDAPCKIDFWLRNLGAL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L++  I       +++  + + L   C +  V  +  N +Y +NE RRD  + + L 
Sbjct: 59  SATLAELNIPLLIRAAAHWHQAPQVLLKLCRELNVGAVHVNEEYGLNETRRDAEVARVLN 118

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + V   S  D +L  PGS+L      ++V++ FRK     L  +    +  PA +    
Sbjct: 119 DQGVEFHSHLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHFSLPSLVATPARQALTG 178

Query: 188 VTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P   D    P +A+  ++P GE  A   L  F  + +  Y  +RD PA  GTSQ
Sbjct: 179 IARDPVPTQVDGFAPPSEALRALWPAGETEARRRLDTFVDQHIDDYQGERDYPARPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL  GV+SPRQC +   +          +GA +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSAYLVAGVVSPRQCLHAALQANQGEFESGSAGAVTWINELLWREFYKHILVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE + W K    L+AWKQ  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALAWRKAPAELEAWKQARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DS P+FRIFNP  Q ++FD +G F
Sbjct: 359 LLIDWREGERFFMQHLIDGDLAANNGGWQWSASTGTDSAPWFRIFNPLSQSEKFDREGLF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474
           I+ WLPELN++  Q +H+P++   +  L  +++YP PIVD +++    L  +
Sbjct: 419 IKRWLPELNDLDKQQVHSPNT---QGGLFGAVDYPAPIVDLRQSRARALAAF 467


>gi|332853990|ref|ZP_08435106.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150]
 gi|332869730|ref|ZP_08438918.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113]
 gi|332728272|gb|EGJ59654.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150]
 gi|332732632|gb|EGJ63865.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113]
          Length = 480

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 192/470 (40%), Positives = 274/470 (58%), Gaps = 15/470 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  
Sbjct: 4   AYQLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRT 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L
Sbjct: 62  LQKELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYL 121

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLT 185
            +H      F D  + P  SI N + Q Y+V++ F+KA    L  + L +  PVP  +  
Sbjct: 122 NRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNE 181

Query: 186 GP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            P        +    I + F     +    ++P+GEQ AL  L +F ++ V +Y  +RD 
Sbjct: 182 VPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDF 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++ 
Sbjct: 242 PHIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILF 301

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V    PF   ++KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMI
Sbjct: 302 DFPHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMI 361

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K
Sbjct: 362 TAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSK 421

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           +FD +G +IR W+ EL ++  + IH P+S   K+DL LNY  PIVD K+ 
Sbjct: 422 KFDLEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKET 469


>gi|110833627|ref|YP_692486.1| DNA photolyase [Alcanivorax borkumensis SK2]
 gi|110646738|emb|CAL16214.1| DNA photolyase [Alcanivorax borkumensis SK2]
          Length = 484

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/485 (38%), Positives = 273/485 (56%), Gaps = 19/485 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSD-------AKVIAVFIATPEQWRQHGISARQSHFI 61
           ++LVW RNDLR+  +  L+AA   S         + +AV+     QW +H ++  +  ++
Sbjct: 1   MNLVWYRNDLRVAAHSPLHAALTESSISAGETRPQALAVYCLCQGQWDRHQVAPLRRWYV 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL ++ +SL+ +GI         F+   E L  +   Q VT L+ NR+Y +NE +RD 
Sbjct: 61  LESLRELGESLANRGIDLHVLDVDTFEKVPEALAEFAQSQGVTHLYCNREYPLNEKQRDT 120

Query: 122 LLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           L+ +RL+ + +I + FDD VL+PP ++       Y V+  ++K              PVP
Sbjct: 121 LVAERLREQGIILRGFDDGVLVPPAALRTGKGTPYTVFGAYKKRWDVWTADHHPAMTPVP 180

Query: 181 A-IRLTGPVTPSNIP----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           +  R  G    + +        D P +A+   +  GE+ A   L +F +  +  Y   RD
Sbjct: 181 SQCRAEGTFMGAKVVAKALEMLDVP-EALTQQWAPGEEAAWQQLDQFMERSLADYRRNRD 239

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P + GTS LS  LS G LS   C+    +   D     + GA  W++EL WR+FYR +M
Sbjct: 240 FPDLSGTSGLSVALSAGTLSVASCFRAATQAMAD--AGSRDGAACWIDELAWRDFYRQIM 297

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A +P V  G+ F P T+ +EW  D  L  AW +G TG+P++DAAMRQL   GWMHNRLRM
Sbjct: 298 AQFPRVSRGQGFRPETDLLEWKNDDELFAAWCEGRTGYPLVDAAMRQLVATGWMHNRLRM 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TA FL K L +DWR GE +FM+ L+DGD A+NNGGWQW+AS+G D+VPYFR+FNP  QG
Sbjct: 358 VTAMFLSKHLWLDWRRGEAFFMTHLIDGDFAANNGGWQWSASSGTDAVPYFRVFNPVRQG 417

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +RFD +G FI HW+P+L ++ ++ IH P  W  +  L+ +YP P+V H          + 
Sbjct: 418 QRFDSEGRFIAHWVPQLRDLDSKQIHEP--W-KQPLLARDYPPPVVPHAGVRERVTVAFK 474

Query: 476 AAKKQ 480
           AAK +
Sbjct: 475 AAKSR 479


>gi|332306448|ref|YP_004434299.1| Deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173777|gb|AEE23031.1| Deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 482

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/480 (40%), Positives = 276/480 (57%), Gaps = 25/480 (5%)

Query: 11  LVWLRNDLRITDNKAL-YA-ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           LVWLR DLR + N A+ YA A H S   V AV+  T +QW ++ ++  +   IY  L+ +
Sbjct: 4   LVWLRTDLRSSWNSAIDYAVASHES---VSAVYFVTQKQWSKYNMANSKIALIYQRLVSL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           Q+ L ++ I  Q      ++   E L   C++  VT ++ N +YE +E +RD  ++  L 
Sbjct: 61  QEELKERNINLQVMDGGIYETLPEKLTELCVKNHVTHVYCNAEYEWDERQRDASVKNSLN 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-VP---AIR 183
           +  V   +F D+ L+ P  I+N   + YKV+TP+ K      ++  LR LP VP   +  
Sbjct: 121 KMDVAFATFHDTCLVKPTEIMNLKNEPYKVFTPYFK----RWLEMTLRQLPGVPEKCSAN 176

Query: 184 LTGPVTPSNIPRFFDYPFQAID---------PMFPIGEQNALHILRKFCKEKVYYYVEQR 234
            TG     +  ++ +      +         P +P         +  F  E    Y + R
Sbjct: 177 DTGLKHSEDDNQYIESLISKTNRQGSDGSDAPSWPATASEITKKMNGFIVEFAPDYPKNR 236

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           DIP+I+GTS++SPYLSIG LSPRQC   + +E+ +  + P+ GA++W+ E+ WR+FYR++
Sbjct: 237 DIPSIEGTSKISPYLSIGALSPRQCLFHVLQEYGEDALSPEHGAYTWVKEIAWRDFYRYV 296

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           M  +P V  G PF    +  +W  +     AWK G TG+PI+DAAM  L   GWMHNRLR
Sbjct: 297 MFHFPHVSRGLPFQKHYQYFKWENNQQHFDAWKAGETGYPIVDAAMIALKQTGWMHNRLR 356

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASF  K LL+ W+  E+YFMSQL+DGD ASNNGGWQW+AS G D+ PYFRIFNPT Q
Sbjct: 357 MIVASFYCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTDAAPYFRIFNPTTQ 416

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            +RFDPQG FI+ WLP+L ++  + +H P    D     L Y LPIV+HK +   T  Q+
Sbjct: 417 SERFDPQGEFIKTWLPQLAHLSPKQVHEPSKHCDVQ--RLGYALPIVEHKASVARTKAQF 474


>gi|152995181|ref|YP_001340016.1| deoxyribodipyrimidine photo-lyase [Marinomonas sp. MWYL1]
 gi|150836105|gb|ABR70081.1| Deoxyribodipyrimidine photo-lyase [Marinomonas sp. MWYL1]
          Length = 470

 Score =  346 bits (888), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 189/462 (40%), Positives = 262/462 (56%), Gaps = 13/462 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIA-TPEQWRQHGISARQSHFIYASL 65
            HLVWLRNDLR  DN ALY A    N   + IAV +  TP+QW QH  S  ++      +
Sbjct: 4   THLVWLRNDLRCVDNPALYLASLEANFAREGIAVIVTPTPKQWEQHNESDAKNGLRAGLI 63

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + K+L+  GI     +   FD   + +  +CL   +  L++NR   I+E +RD+ + +
Sbjct: 64  KNLAKTLATLGIPLHTLEADTFDQLPDAITVFCLSNNIKHLWFNRDLPIHEQQRDQAVCE 123

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +LQ   I      + ++    +L+     +KV+TPF    +  L Q D+  LP P  +  
Sbjct: 124 QLQQHQISTHVQATDIIVSQDVLSQQGTPFKVFTPFFNRWVTMLAQQDITPLPTPDPQAE 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               P  +   ++ PF+  D ++P     A   L +FC  K  +Y E RD P    TS L
Sbjct: 184 ALPEPC-LNLTWEKPFR--DDLWPADHDTAKQKLWQFCHHKERHYQEGRDYPIEPATSTL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           SPYL++G L PRQC   L+  F     + +    S WL EL WR+FYR LM+ +P +C  
Sbjct: 241 SPYLALGALGPRQC---LEAIFYTCNQEERRWQDSIWLKELAWRDFYRQLMSHFPFLCKS 297

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF P T  + W ++    QAW +G TGFPI+DAAMRQLN  GWMHNRLRM+ ASF  K 
Sbjct: 298 RPFKPETSALIWRQNEEEFQAWCEGRTGFPIVDAAMRQLNQTGWMHNRLRMVAASFFTKL 357

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           +  DWR GE YFMS+L+DG+ A+NNGGWQW+ASTG D+ PYFR+FNPT Q + +D  G F
Sbjct: 358 MFADWRRGEAYFMSKLIDGEFAANNGGWQWSASTGCDAAPYFRVFNPTRQSQTYDKNGDF 417

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           IR ++PEL  +  + IH P     K     +YP PI+D+K A
Sbjct: 418 IRRFVPELTKLDAKSIHDPKPEQRKQ---CHYPEPIIDYKPA 456


>gi|32490931|ref|NP_871185.1| hypothetical protein WGLp182 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166137|dbj|BAC24328.1| phrB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 475

 Score =  346 bits (888), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 190/473 (40%), Positives = 278/473 (58%), Gaps = 10/473 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W R DLR+ DN ALY AC +       + I   ++W +  +S  +  F+Y ++ 
Sbjct: 1   MIDNLIWFRKDLRLNDNPALYYACVDEYKSASGILILNKKKWNEKIVSKNRIRFMYKNIF 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++++L + GI   ++ C +F +    L ++C   +V +L++N+  E  ++  DK++ K+
Sbjct: 61  SLKRNLKKIGIELIFYTCRDFFEYTCLLYNFCYTNKVKELYFNKGIEKEDLEEDKIIIKK 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+    C  F+ ++L+ P  I N   + YKVY+ F K+ I  +   ++  +P P IR   
Sbjct: 121 LKKITKCICFNGNLLIDPEKIKNKNKKTYKVYSYFLKSCISFISNNNINIIPFPKIR--- 177

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                N+ + ++   +    + P  E++AL+ L  F K K+  Y   RD   I  TS LS
Sbjct: 178 -KNKLNLIKSYNDSIKIKKKLSPCYEEHALNKLNNFIKLKINKYHITRDF-CINSTSFLS 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY++IGVLS R+C N +K    D + K  SG F W +E+IWREF  HL+  Y      K 
Sbjct: 236 PYINIGVLSLRECINNIKNNNFDFIEKKNSGHFKWFSEIIWREFCHHLIIEYSDFFDSKK 295

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
            I WT+ I+W      +QAWK G TGFPIIDAAMRQL   GWMHNRLRMIT+SFLVKDLL
Sbjct: 296 LIKWTKYIKWENKIKKIQAWKNGTTGFPIIDAAMRQLKKTGWMHNRLRMITSSFLVKDLL 355

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDW+IGE+YF   L+DG+ A NN  WQW +S+G  S PYFR+ NP  Q K+F     +I+
Sbjct: 356 VDWKIGEKYFYYHLIDGNSAINNFNWQWISSSGICSSPYFRMINPITQSKKFKSIYKYIK 415

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            W+PEL N+P   IH P++W+ KN   +NYP  I++HK A    +N + A KK
Sbjct: 416 FWIPELKNIPFNEIHEPYNWIIKN--KINYPNQIIEHKTA---KINFFKACKK 463


>gi|71065000|ref|YP_263727.1| deoxyribodipyrimidine photo-lyase type I [Psychrobacter arcticus
           273-4]
 gi|71037985|gb|AAZ18293.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter arcticus
           273-4]
          Length = 541

 Score =  345 bits (886), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 198/507 (39%), Positives = 273/507 (53%), Gaps = 50/507 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACH--NSD-AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           +L+W R DLR+ DN AL A C   N+D AK+ AVF  TPEQW+ H +S  Q   I  +L 
Sbjct: 24  YLMWFRRDLRVHDNTALAAICERANTDNAKLSAVFFLTPEQWQTHDMSLTQLDHIARTLP 83

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L    I      C +F D I  L + C    ++ +  N +YE NE+ RD+ L K+
Sbjct: 84  ILAQKLQALNITLTVQICPSFTDCIAALSALCESNNISCVMANHEYEGNEIARDEQLTKQ 143

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
           L    I    + D  +LPP +I  +   MY+V+TPF K     L   D++    PAI   
Sbjct: 144 LAKTDIEFIRWHDQCILPPQTITTNDNSMYQVFTPFYKKWRHTLEVGDIQIHTAPAITNN 203

Query: 184 -----LTGPVTPSNI--------PRFFDYP--------FQAIDP---------MFPIGEQ 213
                ++   + + I            DY         +Q ID           +P GE 
Sbjct: 204 EQINLISSEFSANTIQAIEALCKETVHDYQQYLQTHECYQYIDTDKQISQARTAYPAGEA 263

Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            A H L +F  + + +Y   RD+P++  TS LS YL+IG LSPR C+ +  +   +L   
Sbjct: 264 EACHRLTQFISDDINHYDVSRDVPSLHATSHLSAYLTIGALSPRLCYLQATKALGELHRN 323

Query: 274 PKSGAFS--------WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDSHLLQ 324
                 S        W++EL WR+FYRH++ + P +   + +   T+K I W+ D     
Sbjct: 324 DGDNFDSGDNNDINRWISELAWRDFYRHVLDYKPELIRHQAYKHETDKKINWSYDEDAFA 383

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           AW++G TG P++DAAMR LN  G+MHNRLRM+TA FL KDLL+DWR GE YFM QL+DGD
Sbjct: 384 AWREGKTGVPLVDAAMRCLNATGFMHNRLRMVTAMFLTKDLLIDWRWGERYFMQQLIDGD 443

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            ASNNGGWQW+ASTG DS PYFRI NP  Q K  D  G F++ WLPEL  +P   +H+  
Sbjct: 444 FASNNGGWQWSASTGTDSAPYFRIMNPFSQAKTHDSDGIFLKTWLPELEPIPASILHSED 503

Query: 445 SW---LDKND--LSLNYPLPIVDHKKA 466
                L KN     ++YP+P+V+HK A
Sbjct: 504 KMRKALSKNGAFADIDYPIPMVEHKLA 530


>gi|308049190|ref|YP_003912756.1| deoxyribodipyrimidine photo-lyase [Ferrimonas balearica DSM 9799]
 gi|307631380|gb|ADN75682.1| Deoxyribodipyrimidine photo-lyase [Ferrimonas balearica DSM 9799]
          Length = 456

 Score =  345 bits (885), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 185/458 (40%), Positives = 272/458 (59%), Gaps = 25/458 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R+DLR+ D+ AL+AA    +  V+A++IA+P+QW+ H    R++ + YA++  +
Sbjct: 1   MQLVWFRDDLRVHDHPALFAAAQRGE-PVVALYIASPQQWQLHDCGPRKAQWHYANVQAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +++L+  GI     +C +FDD    L + C +  +  +  +    +NE    + LE++L 
Sbjct: 60  REALAGLGIPLTVWRCEHFDDIPARLGALCNEAGIGAVHCHHGLGVNE----RALEQKLA 115

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            Q  V    + D+ L+   +I      +Y+V+TPF +   Q +        P    +   
Sbjct: 116 DQLPVPLHRYADANLVDYSAITTGQGGLYQVFTPFARRCRQWMAPPQPLPAPE--PQAAQ 173

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P   ++     D   + +D ++P GEQ A   L +FC++++  Y + RD PA  GTS LS
Sbjct: 174 PPLQAD-----DAWSETVDLLWPAGEQAAARTLARFCQQRLSAYHDDRDWPAKAGTSALS 228

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY + GVLSPRQ  + L ++          GA SWLNEL+WREFYR+L+  +  +     
Sbjct: 229 PYFAAGVLSPRQAAHALSQQ------ADGEGAQSWLNELLWREFYRYLLYHHARLSRHDA 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P  ++  W  +   L+ W+QG TGFP++DA MRQLN  GWMHNR+RM+ ASFLVKDL 
Sbjct: 283 LFP-AKEARWEANDEWLRRWQQGRTGFPLVDAGMRQLNATGWMHNRVRMLCASFLVKDLH 341

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE YFM QL+DGDLASNNGGWQWAA  G D+ PYFR F+P  Q +RFDP G +IR
Sbjct: 342 IDWRLGEAYFMQQLVDGDLASNNGGWQWAAGCGADAAPYFRSFSPYRQSERFDPDGDYIR 401

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
            W+PEL  VP + +H    +L    L+ +YP P+VDHK
Sbjct: 402 QWVPELAEVPARQLHKGGPFL----LAPDYPAPMVDHK 435


>gi|85711625|ref|ZP_01042682.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
 gi|85694485|gb|EAQ32426.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
          Length = 468

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 182/471 (38%), Positives = 268/471 (56%), Gaps = 11/471 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R+DLR  DN AL AAC N    V A+F+     W+ H  +  +    +  L + ++
Sbjct: 4   VVWFRSDLRTVDNPALDAACLNH-KHVYALFLVPQRTWQAHDWAPIKVDLWWRHLAEFKQ 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ KGI F       F  S   +  +C + +V  ++ NR+Y ++E+ RDK      + R
Sbjct: 63  ELADKGIGFSIFTIDRFSQSGATIADFCEKHKVNTVYANREYPLDEIERDKQARACFEQR 122

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  + FD ++L+PP ++       YKV+TPF +A    +  A +      + R+   V 
Sbjct: 123 DIEFQLFDGNLLVPPEAVETKQGGYYKVFTPFNRAWRTEV--AKISDWTPESWRVENTVA 180

Query: 190 PSN-IPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            S  +P+    P +  +   +P+G Q  +  L +F + +V  Y  +RD P++ GTS +S 
Sbjct: 181 SSTELPQC---PLERKNSQTYPVGRQAIMGKLGQFIEHQVDEYKARRDEPSVDGTSMMSA 237

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           Y  +G ++P+     L     +     + GA +WL E+ WREFY+HLM   P +  G+ +
Sbjct: 238 YFEMGAIAPKTVARALSSLSPEFPYGLEPGADTWLTEVAWREFYQHLMFHEPRLSRGENY 297

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
              T+ + W       QAW  G TGFPI+DA MRQLN  GWMHNRLRMI A+FLVKDLL+
Sbjct: 298 QTETQGLPWRDAEEDFQAWCDGRTGFPIVDAGMRQLNETGWMHNRLRMIVANFLVKDLLI 357

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YFM  L+DG   +NNGGWQW+AS G D+VPYFR+FNP  Q ++FDP G +IR 
Sbjct: 358 DWRKGEQYFMRNLVDGSFPANNGGWQWSASVGTDAVPYFRVFNPVRQSEKFDPDGIYIRT 417

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           W+ EL +VP+++IH PHS+L ++     Y  PIVDH +A    L+ +   K
Sbjct: 418 WIKELADVPSKHIHWPHSYLKQH--KTGYVSPIVDHSEARERFLSTFKQVK 466


>gi|262377211|ref|ZP_06070436.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii
           SH145]
 gi|262307949|gb|EEY89087.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii
           SH145]
          Length = 469

 Score =  343 bits (880), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 191/470 (40%), Positives = 281/470 (59%), Gaps = 24/470 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+W R DLRI D+ AL+ A        IAV + +PEQW+ H  +  +  F    L  +
Sbjct: 1   MQLIWFRQDLRIHDHAALWHATQQ--GSCIAVMVLSPEQWKLHQDARIKIDFYLRRLDIL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L+Q  I         + D    + S C + ++  L  N +  +NE++RD  +++ L+
Sbjct: 59  KQQLAQLNIPLIILNVPLWQDLPAEMRSLCQKLQIDTLHANIEVGVNELQRDAQVQQMLE 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLT 185
            + I  + + D  L P  SI N + Q Y++Y+ F+K   + L+Q    ++P   P I+  
Sbjct: 119 QQQIRVELYHDRSLFPLTSIRNQSNQPYQIYSAFKKKCYERLIQ----NIPGCYPDIQAQ 174

Query: 186 GPVT-PSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            PV  P  +  F       +Y       ++P  +  AL +L  F ++K+ +Y  +R++PA
Sbjct: 175 DPVELPDQLTSFDLQKFAANYEVDHAAQLWPAQDHTALELLDDFIEDKIAHYKTERELPA 234

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           + GTS+LSPYL+IG+LS RQC   L K+ +  +      G  +WL+EL+WREFY H +  
Sbjct: 235 VDGTSRLSPYLNIGILSIRQCMQTLFKDSYFQI---DDIGQQTWLDELLWREFYLHTLFD 291

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P V   +PF   T+ I+W      L AW+QG TG PI+DA MRQ+   GWMHNR+RMIT
Sbjct: 292 FPRVSRHRPFKENTDNIQWRNAPDNLAAWQQGQTGIPIVDAGMRQMRATGWMHNRVRMIT 351

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           A FL K+LL+DWR+GE +FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q ++
Sbjct: 352 AMFLCKNLLIDWRLGESWFMQHLIDGDLAANNGGWQWCASTGMDAVPYFRIFNPVSQSQK 411

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-DLSLNYPLPIVDHKKA 466
           FDP G +IR W+PEL ++  + IH P++   KN DL+L+YP PIVD K +
Sbjct: 412 FDPNGDYIRQWVPELTHLNAKSIHEPYA---KNPDLALDYPKPIVDLKAS 458


>gi|50084372|ref|YP_045882.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Acinetobacter sp. ADP1]
 gi|49530348|emb|CAG68060.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Acinetobacter sp. ADP1]
          Length = 477

 Score =  342 bits (877), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 186/464 (40%), Positives = 268/464 (57%), Gaps = 16/464 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W RNDLR+ D+ AL+ A        IA    +P QW+QH  +  +  F    L Q+++
Sbjct: 4   LIWFRNDLRLNDHAALWHATQA--GSTIAFVALSPLQWQQHDDAIIKIDFYMRQLTQLKQ 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I         + D    + S   +  +  ++ N +  INE+ RD  +++ L   
Sbjct: 62  ELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSK- 120

Query: 131 VICKS---FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            I K+   F D  L P GSI N +   Y+V+TPF+K   + L     +  P P  +   P
Sbjct: 121 -IGKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQP 179

Query: 188 VTP---SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 + IP      +  ID      +PIGE  AL++L  F ++K+  Y E RD PA  
Sbjct: 180 EIAKKEAAIPSLKQLGYSQIDQHIQNEWPIGETFALNLLEDFTQDKINRYHESRDYPAQD 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS +S YL+IG+LS RQC   + ++          G   WLNEL+WREFY+ L+  +P 
Sbjct: 240 GTSHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEIWLNELLWREFYQQLLFDFPK 299

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +   +PF   T+ I WN++    +AW QG TG PI+DA MRQL   GWMHNR+RMI A F
Sbjct: 300 LSRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVRMICAMF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR GE++FM  L+DGDLA+N+GGWQW+ASTG D+ PYFRIFNP  Q ++FDP
Sbjct: 360 LSKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQSQKFDP 419

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           +G F++ W+PEL ++ +++IH P+++  K +  LNYP PI+D K
Sbjct: 420 EGVFLKKWIPELKHLDSKHIHDPYAYQHKTE--LNYPKPIIDLK 461


>gi|109898496|ref|YP_661751.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c]
 gi|109700777|gb|ABG40697.1| deoxyribodipyrimidine photo-lyase type I [Pseudoalteromonas
           atlantica T6c]
          Length = 481

 Score =  342 bits (877), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 191/480 (39%), Positives = 269/480 (56%), Gaps = 26/480 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR   N A+  A  N D  V AV+  T EQW  + +S+ +   IY  L+ + K
Sbjct: 4   LVWLRTDLRSKWNSAIDYAVDNHD-NVTAVYFTTKEQWDTYNLSSHKVALIYQRLVNLHK 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+++ I  Q  + S +      L   C +  VT ++ N +YE +E +RD  ++  L+  
Sbjct: 63  ELAERNIELQVIEGSIYQAIPVRLKDICTKIGVTHVYCNAEYEWDERQRDLAVKNILKKI 122

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I    F D+ L+ P  I+N   + YKV+TP+ K  +   +Q       +P +      +
Sbjct: 123 DIPLAMFHDTCLVKPTEIMNLKNEPYKVFTPYFKRWLDTTLQQ------LPGVPDNHKAS 176

Query: 190 PSNIPRFFDYPFQAIDPMFPIGE------------QNALHILRK---FCKEKVYYYVEQR 234
            + + +  +   Q ID +    E              A  I +K   F  E    Y + R
Sbjct: 177 DTGLSQSANDSIQ-IDSLLKTNEIEISKEFSTNWPTTAAKITKKLNAFIIEFSPVYPKNR 235

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           DIP++ GTS++SPYLSIG LSP QC   + +E+ D  +  + GA++W+ E+ WR+FYR++
Sbjct: 236 DIPSVDGTSKVSPYLSIGALSPAQCLFHVLQEYGDDALSLEHGAYTWIKEIAWRDFYRYV 295

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           M  +P V  G PF    +  +W  + H   AWK G TG+PI+DAAM  L   GWMHNRLR
Sbjct: 296 MYHFPHVSRGLPFQKHYQHFKWESNQHHFDAWKAGKTGYPIVDAAMIALRETGWMHNRLR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASF  K LL+ W+  E+YFMSQL+DGD ASNNGGWQW+AS G D+ PYFRIFNPT Q
Sbjct: 356 MIVASFYCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTDAAPYFRIFNPTTQ 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            +RFDP+G FI+ WLPEL ++  + IH P    D     + Y LPIV+HK +   T  Q+
Sbjct: 416 SERFDPKGEFIKTWLPELEHLSPKQIHEPSKHCDVQ--RIGYALPIVEHKASVMRTKEQF 473


>gi|254428910|ref|ZP_05042617.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
 gi|196195079|gb|EDX90038.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
          Length = 501

 Score =  342 bits (877), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 184/490 (37%), Positives = 274/490 (55%), Gaps = 30/490 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVI------AVFIATPEQWRQHGISARQSHFIY 62
           ++LVW RNDLR+  +  L AA   S  + +      AV+     QW +H ++  +  ++ 
Sbjct: 1   MNLVWYRNDLRVAAHSPLQAALSESSGEAVSGPRALAVYCLCQGQWDRHQVAPLRRWYVL 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+ ++ ++L+++GI     +   F    E L  +  +  VT L+ NR+Y +NE +RDK 
Sbjct: 61  ESVRELGEALARRGIDLHVLEADTFAAVPEVLAQFAQEHGVTHLYCNREYPLNEKQRDKA 120

Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-----------ALIQNLV 170
           + +RL+ + V  + FDD VL+PP ++       Y V+  ++K           A+     
Sbjct: 121 VAERLRGQGVSLQGFDDGVLVPPAALRTGKGTPYTVFGAYKKRWDVWMADHHPAVTPAPP 180

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           ++D R   V A  +   +   ++P       +A+   +  GE+ A   L +F ++ +  Y
Sbjct: 181 ESDHRGNFVGAAVVDKALKALSVP-------EALTQQWLPGEEAAWQQLDQFVEQALAGY 233

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             QRD P I GTS LS  LS G LS   C+    +   D     + GA  W+ EL WR+F
Sbjct: 234 RRQRDFPDIAGTSGLSAALSAGALSVASCYRAASQAMAD--AGSRDGATCWIGELAWRDF 291

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           YR +MA +P V  G+ F P T+ ++W++D     AW +G TG+P++DAAMRQL   GWMH
Sbjct: 292 YRQIMAQFPRVSRGQAFRPETDLLQWDQDDERFAAWCEGRTGYPLVDAAMRQLVATGWMH 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NRLRM+TA FL K L +DWR GE +FM+ L+DGD A+NNGGWQW+AS G D+VPYFR+FN
Sbjct: 352 NRLRMVTAMFLSKHLWLDWRRGEAFFMAHLMDGDFAANNGGWQWSASAGTDAVPYFRVFN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  QG+RFD +G FI  W+PEL  + ++ IH P  W  +  L+ +YP PIV H       
Sbjct: 412 PVRQGQRFDSEGRFIARWVPELRGLDSKQIHEP--W-KQPLLAPDYPPPIVPHAGVRERV 468

Query: 471 LNQYYAAKKQ 480
              + AAK Q
Sbjct: 469 TTAFKAAKTQ 478


>gi|294649780|ref|ZP_06727183.1| deoxyribodipyrimidine photo-lyase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824331|gb|EFF83131.1| deoxyribodipyrimidine photo-lyase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 476

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/467 (40%), Positives = 273/467 (58%), Gaps = 18/467 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLRI D+ AL+ A      + +A+ I +PEQW+ H  +  +  F    L Q+Q 
Sbjct: 7   LIWFRQDLRIHDHAALWHATQT--GRTVALVILSPEQWQLHDDAPIKIDFYLRQLQQLQI 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           +L    I         + D  +          + +++ N +  +NE++RD  ++K L Q 
Sbjct: 65  ALQSLNIPLIVQHLPLWKDITQLFADLMQNIPIQQVYANIELGVNELKRDNEVQKLLNQQ 124

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                 F D  L P  SI N + Q Y+V++ F+K   Q L Q+  +  PVP ++   P+ 
Sbjct: 125 NKELVLFHDRTLFPVASIRNQSHQPYQVFSAFKKVCYQRLQQSLPQCYPVPDVQ--QPIN 182

Query: 190 PSNIPRFFDYP---------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               P   D+             +   +P+ E  AL +L +F  +++  Y   RD PA  
Sbjct: 183 IDPYPSLEDFKELQLKYTQQLNHLTQQWPVSESFALTLLDQFIHDRLDDYKNARDFPAQA 242

Query: 241 GTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           GTSQ+S YL+IG+LS RQC   L  ++  D LI+ + G  +WL+EL+WREFY+H++  YP
Sbjct: 243 GTSQVSAYLNIGILSIRQCLQALFHKQHGDFLIESE-GQQTWLDELLWREFYQHILFDYP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V    PF   T+KI W  D   LQ W+QG+TG PI+DA MRQL   GWMHNR+RMI A 
Sbjct: 302 RVSKHLPFQLSTQKIHWRDDPVALQQWQQGHTGIPIVDAGMRQLLATGWMHNRVRMICAM 361

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP  Q ++FD
Sbjct: 362 FLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQKFD 421

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           P G ++R W+PEL ++  + IH P+++  K + SLNYP+PIVD K +
Sbjct: 422 PNGDYLRQWIPELAHLDAKSIHEPYAY--KMNSSLNYPIPIVDLKSS 466


>gi|255318398|ref|ZP_05359631.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens
           SK82]
 gi|262378628|ref|ZP_06071785.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           radioresistens SH164]
 gi|255304390|gb|EET83574.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens
           SK82]
 gi|262299913|gb|EEY87825.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           radioresistens SH164]
          Length = 479

 Score =  339 bits (869), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 195/470 (41%), Positives = 267/470 (56%), Gaps = 17/470 (3%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MSV+ LVW R DLRI D+ AL+ A        IA+   +P QWRQH  +  +       L
Sbjct: 1   MSVYQLVWFRQDLRIVDHSALWHA--RQTGPCIALVTLSPVQWRQHDDAVIKIDLYLRQL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++ L Q  I         + +  E+L   C    V ++  + +  INE +RD+  ++
Sbjct: 59  KVLKEQLKQLNIPIIIQTIPLWKEVPEFLLECCQSLSVQQIHAHIEAGINEQQRDQDCQQ 118

Query: 126 RLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------- 176
            L    I  + + D  L P GSI N   Q Y+V+  F+KA    L  A  +         
Sbjct: 119 LLDTSGIALTLYQDRTLFPFGSITNQNGQPYQVFGAFKKACYSRLEIALPKCYTEITAQN 178

Query: 177 -LPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
            + +PA+       P +I +  D P  ++I  ++P  E +A  +L +F +  + +Y  +R
Sbjct: 179 PITLPALDQFQQTVP-DIRQLCDIPVPESIQQLWPACENHAHTLLEQFLENHIQHYHIER 237

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D PA  GTSQLS YL+IGVLS RQC   L        +  + G   WL+EL+WREFY+H+
Sbjct: 238 DFPAHSGTSQLSAYLNIGVLSIRQCIQALFRHQSGYFVPEQEGQSIWLDELLWREFYQHI 297

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P+V    PF      I W  D   L AW+QG TG PI+DA MRQL   GWMHNR+R
Sbjct: 298 LYLFPNVSKYLPFKANARNIPWQDDKTALTAWQQGQTGIPIVDAGMRQLLVTGWMHNRVR 357

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MITA FL K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG DSVPYFRIFNP  Q
Sbjct: 358 MITAMFLCKNLLIDWRQGEQWFMQHLIDGDLAANNGGWQWCASTGTDSVPYFRIFNPVSQ 417

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
            ++FDP+G +IR W+PEL ++  + IHAP+    K    L+YP PIVD K
Sbjct: 418 SRKFDPEGQYIRTWIPELAHLDAKTIHAPYE--SKTVQQLDYPKPIVDLK 465


>gi|329133694|gb|AEB78728.1| DNA photolyase [Acinetobacter sp. Ver3]
          Length = 470

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 190/475 (40%), Positives = 272/475 (57%), Gaps = 11/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L+    DLR+ DN AL  A  + ++   AV I + EQW+ H  S  +  F    L  V
Sbjct: 1   MNLIGFSQDLRVRDNTALMEATRHGNS--CAVVILSHEQWKLHDDSEIKIDFYLRQLKSV 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L Q  I         ++D    L ++  + +VT +  N +  +NE+ RD  ++  L+
Sbjct: 59  ENELKQFNIPVMVEIVPQWEDVPARLLTFANKYQVTVIHANIEIGVNELHRDAQVQTLLE 118

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---L 184
            H+V  + + D  + P GSI N   Q Y+V   +++A  + L  + L+ L VP ++   L
Sbjct: 119 SHKVTVEYYHDRTIFPLGSIRNKTHQPYQVLGAYKRACYEILNISVLQPLAVPKVQPHEL 178

Query: 185 TGPVTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                   IP   D YP   +   +P+GE  AL +L KF  E +  Y +QRD P I  TS
Sbjct: 179 IQRFHTFKIPSIHDFYPDAQVKYQWPVGESFALQMLEKFVDENLEPYKQQRDFPNIDATS 238

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL++G++S RQC   +             G  +WL+EL+WREFY+H++  +P +  
Sbjct: 239 QLSPYLNLGIVSIRQCLAAIFSRSNGNFHLYSDGQQTWLDELLWREFYQHILFDFPRLSK 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF   T  + W      L AWK G TG PI+DA +RQ+   GWMHNR+RMI A FL K
Sbjct: 299 YQPFNLNTSNVPWRDAPDELNAWKFGQTGIPIVDAGIRQMLETGWMHNRVRMIVAMFLSK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q ++FD QG 
Sbjct: 359 NLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPISQSQKFDSQGN 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN-DLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +IR W+PEL ++  + IH P++   KN +L LNYP PIVD K +    L  + +A
Sbjct: 419 YIRKWVPELAHLDAKIIHEPYA---KNPNLKLNYPKPIVDLKMSRQRALAAFKSA 470


>gi|148652562|ref|YP_001279655.1| deoxyribodipyrimidine photo-lyase [Psychrobacter sp. PRwf-1]
 gi|148571646|gb|ABQ93705.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter sp. PRwf-1]
          Length = 550

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 201/547 (36%), Positives = 284/547 (51%), Gaps = 89/547 (16%)

Query: 11  LVWLRNDLRITDNKAL-------YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           L+W R DLR+ DN AL         A  ++++ + AVF+ TP+QW  H +S  Q   +  
Sbjct: 10  LMWFRRDLRLHDNTALTLLLEQVVQASQHTESCLQAVFVMTPKQWLAHDMSISQVDLMMR 69

Query: 64  SLLQVQKSLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           +L  + + L    GI     Q  ++ DSI+ ++++C+   +T +  N +YE+NE +RD  
Sbjct: 70  TLTHLTRDLHHTLGIKLSVLQAESYSDSIDVIEAFCVDNHITHVGCNYEYEVNEQQRDTA 129

Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRS 176
           L KRL    +    + D  +LPP +I      +YKV+TPF K   Q L     V  D+ S
Sbjct: 130 LAKRLSKLNIKFNQYHDQCILPPNTIKTGDDTLYKVFTPFYKKWQQTLQISPPVLYDINS 189

Query: 177 LPVPAIRLTGPVTPSNI---------------------------------PRFF------ 197
           L    I+    +T  NI                                  RF       
Sbjct: 190 LTEGDIK--QKLTDLNINQASTDTSSTQNTSSTQHTSSTQSIKDSHQSVLQRFTSHYQLS 247

Query: 198 ----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
               D   ++    +P GEQ A+  L  F ++ +  Y   RD PA+ GTSQLS YL++G+
Sbjct: 248 KNNADTILESARADYPAGEQAAIDRLNSFVQQDIEEYGITRDQPALMGTSQLSAYLTLGI 307

Query: 254 LSPRQCW----NRLKEE-FVDLLIK-------PKSGAFSWLNELIWREFYRHLMAFYPSV 301
           +SPR C+     RL+ + F D   K        KS    W++EL WR+FYRH+    P +
Sbjct: 308 ISPRLCYLTANARLESKSFADNESKLEIFENNSKSDVERWISELAWRDFYRHVTVDRPDI 367

Query: 302 CMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             G  +   T+ K+ W+ D+   +AW QG TG P+IDAAMR LN  G+MHNRLRM+TA F
Sbjct: 368 VKGAAYKKDTDNKLNWSYDNDDFEAWCQGMTGVPLIDAAMRCLNQTGFMHNRLRMVTAMF 427

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL +DWR+GE YFM  L+DGD ASNNGGWQW+ASTG D+ PYFRI NP  Q K  D 
Sbjct: 428 LTKDLFIDWRLGERYFMQNLIDGDFASNNGGWQWSASTGTDAAPYFRIMNPFSQAKTHDK 487

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-----------LNYPLPIVDHKKACHH 469
              FI+ WLPEL ++    +H      D+N L            +NYPLP+++HK+A  +
Sbjct: 488 DAIFIKSWLPELTDITANILH------DENKLRKALSKQGAFAHVNYPLPMIEHKQARRY 541

Query: 470 TLNQYYA 476
            + Q+ A
Sbjct: 542 AIEQFKA 548


>gi|226952488|ref|ZP_03822952.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
           [Acinetobacter sp. ATCC 27244]
 gi|226836759|gb|EEH69142.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
           [Acinetobacter sp. ATCC 27244]
          Length = 476

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 191/468 (40%), Positives = 271/468 (57%), Gaps = 18/468 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A        +A+ I +PEQ + H  +  +  F    L Q+Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHATQT--GPTVALVILSPEQCQLHDDAPIKIDFYLRQLQQLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            +L    I         + D  +          + +++ N +  +NE++RD  ++K L Q
Sbjct: 64  IALQSLNIPLIVQHLPLWKDITQLFADLMQNIPIQQVYANIELGVNELKRDNEVQKLLNQ 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                  F D  L P  SI N + Q Y+V++ F+K   Q L Q+  +  PVP ++   P+
Sbjct: 124 QNKELVLFHDRTLFPVASIRNQSHQPYQVFSAFKKVCYQRLQQSLPQCYPVPDVQ--QPI 181

Query: 189 TPSNIPRFFDYP---------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                P   D+             +   +P+GE  AL +L +F  +++  Y   RD PA 
Sbjct: 182 NIDPYPSLEDFKELQLKYTQQINHLTQQWPVGESYALTLLDQFIHDRLDDYKNARDFPAQ 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            GTSQLS YL+IG LS RQC   L +++  D +I+   G  +WL+EL+WREFY+H++  Y
Sbjct: 242 AGTSQLSAYLNIGTLSIRQCLQALFRKQHGDFVIE-SEGQQTWLDELLWREFYQHILFDY 300

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI W  D   LQ W+QG+TG PI+DA MRQL   GWMHNR+RMI A
Sbjct: 301 PRVSKHLPFQLSTKKINWCDDPVALQQWQQGHTGIPIVDAGMRQLLATGWMHNRVRMICA 360

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP  Q ++F
Sbjct: 361 MFLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQKF 420

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           DP G ++R W+PEL ++  + IH P+++  K + SLNYP+PIVD K +
Sbjct: 421 DPNGDYLRQWIPELAHLDAKSIHEPYAY--KMNSSLNYPIPIVDLKSS 466


>gi|256823595|ref|YP_003147558.1| Deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069]
 gi|256797134|gb|ACV27790.1| Deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069]
          Length = 459

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/470 (40%), Positives = 267/470 (56%), Gaps = 24/470 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++LVW RNDLR+ DN AL+ A       VI +++   EQ   H  +  +  FIY S+ +
Sbjct: 4   NINLVWFRNDLRVGDNPALFYAAEQ--GAVIGIYLEPVEQREAHDDAPCKIGFIYDSVNE 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K L++  I     +  ++  S+E +     Q     +++N +Y  NE  RD  LEK L
Sbjct: 62  LRKKLNKLNIPLHSFKVKDYQQSVEKIVQLVEQYNTDGVYFNNEYPFNERNRDDELEKVL 121

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             +    K FD  V++PP S+     + YKV+TP++K+ I+      +  LP+P+ +   
Sbjct: 122 LGKGKEVKRFDGDVIIPPNSVSTGKGEPYKVFTPYKKSWIEFHKTQGISPLPIPSKQ--- 178

Query: 187 PVTPSNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 I +  DY F       ++P GE  A   L++F   K  YY E RDIPA++GTS 
Sbjct: 179 ---DFKIEKQHDYDFGHDYRKDLWPAGELAAQDRLKEFLP-KAGYYKEHRDIPAVKGTSM 234

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSV 301
           LSPYL++G +S +QC   L E +     +    AF   +WL+E+IWREFYR ++   P +
Sbjct: 235 LSPYLTVGAISAKQCIESLLEWY-----EGDQEAFYLDTWLSEIIWREFYRQIIIDNPQI 289

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
               PF    +++ WN    L + W Q  TGFP+IDAAMRQL   GWMHNRLRM  A FL
Sbjct: 290 SYHLPFKKDAKEV-WNGQHELFEKWCQAETGFPLIDAAMRQLIQTGWMHNRLRMNVAMFL 348

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K  L+DWR GE +FM  L+DGD ASNNGGWQW +STG D  PYFRI +P  Q +RFDPQ
Sbjct: 349 NKLCLIDWREGEAFFMRHLIDGDFASNNGGWQWCSSTGADGAPYFRIMSPITQSQRFDPQ 408

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
           G FIR  +PEL ++  + IH P S   K    L YP PI+D+K+A    L
Sbjct: 409 GKFIRKLVPELASLNNKDIHFPTSQQRK---ELGYPEPIIDYKEARKAAL 455


>gi|262372026|ref|ZP_06065305.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii
           SH205]
 gi|262312051|gb|EEY93136.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii
           SH205]
          Length = 480

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 180/480 (37%), Positives = 274/480 (57%), Gaps = 16/480 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L+W R DLR+ D  AL+ A  N     IA+ I +PEQW++H  +  +  F    LL+
Sbjct: 4   TYQLIWFRQDLRVRDQAALWHARQN--GPCIAICILSPEQWQRHDDADIKIDFYLRQLLE 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+  I         +DD  E+      +     ++ N ++  NE++RD  +++ L
Sbjct: 62  LKTELSKLQIPLLIFTVPLWDDIAEFFVDLAEKLPFENVYANIEFGFNELKRDNEVQQSL 121

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT- 185
            + +     F D  L P  SI   +   Y+V+  F+K+  Q L     +  P+P  + T 
Sbjct: 122 NRQKKQLILFQDRTLFPVASIRTQSNLPYQVFGAFKKSCYQRLELGLPQCYPIPETQATL 181

Query: 186 -------GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                        NI   +    +  +   + +GE++A ++L +F ++++  Y   RD P
Sbjct: 182 EFDFCQLHQTDLQNIQNHYADKIKDKNASEWRVGEKHARNLLNQFVEKRIIQYNALRDYP 241

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           +++GTSQLS YL+IG++S RQC     + +  D +I+ + G  +WLNEL+WREFY+H++ 
Sbjct: 242 SVKGTSQLSAYLNIGIISIRQCIQAAFRHQQGDFVIQSE-GQQTWLNELLWREFYQHILF 300

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V    PF   T+ ++W  DS   + WK+G TG PI+DA MRQL + GWMHNR+RMI
Sbjct: 301 DFPQVSKHLPFKAATQNVQWRDDSEGFEKWKRGQTGIPIVDAGMRQLLSTGWMHNRVRMI 360

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            A FL K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP  Q +
Sbjct: 361 CAMFLTKNLLIDWRKGEQWFMQNLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQ 420

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FD  G +IR W+PEL  +  + IH P++      L L+YP PIVD K +    +  + A
Sbjct: 421 KFDENGVYIRRWVPELTQLDAKRIHEPYA--QNTALKLDYPHPIVDLKTSRERAIQAFQA 478


>gi|331005568|ref|ZP_08328940.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
 gi|330420618|gb|EGG94912.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
          Length = 480

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 190/482 (39%), Positives = 269/482 (55%), Gaps = 29/482 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWLRNDLR+ DN ALY A H  D     V+  TPEQWRQH  +  +       L+ V
Sbjct: 1   MNLVWLRNDLRLEDNPALYHATHQGD--TCCVYSITPEQWRQHDDAPAKIALWRERLIAV 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSI------EWLDSYCLQQRVT--KLFYNRQYEINEVRRD 120
           Q  L +  I  +  + +N ++S         LD   L  R+    +++N +Y +NE +RD
Sbjct: 59  QHELREHNIPLKLIRFTNDNESTYSNMPAALLD---LANRIDAHSIYFNNEYPLNEKQRD 115

Query: 121 K-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + + E  +        +D  V++ PG++       YKV+TPF +   +   +  L  +  
Sbjct: 116 RHVSELFIYEGKQINRYDGDVVMRPGTVKTQQDATYKVFTPFSRQWHKLAGENQLVMVGK 175

Query: 180 PAIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           PA +    ++     +      D P++    ++P   +     L +F   +   Y E RD
Sbjct: 176 PATQNASLLSLDEDVKTQWLVEDTPYR--QDLWPAKTEAIHQRLHQFAANRASNYKEMRD 233

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           IP++ GTS LSPYL+ G +S RQC + +++   +        +  W+ ELIWREFYRHL+
Sbjct: 234 IPSVNGTSTLSPYLACGAISVRQCISAIRQNVEEWR------SNQWITELIWREFYRHLI 287

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP +   + FI   + I WN D     AW +G TG+PI+DAAM+QL   GWMHNRLRM
Sbjct: 288 DSYPHLSRSENFISLVKPIPWNNDEENFLAWCEGRTGYPIVDAAMKQLVQTGWMHNRLRM 347

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TA+FL K LLVDWR GE +FM  LLDGD ASNNGGWQWAASTG D+ PYFRIF+P  Q 
Sbjct: 348 VTAAFLTKLLLVDWRKGEAFFMQHLLDGDYASNNGGWQWAASTGADAAPYFRIFSPERQS 407

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +RFD +G FI+  LPEL ++  + IH P+S   K   +  Y  P+VD+K A    L +Y 
Sbjct: 408 ERFDKEGVFIKKLLPELCSLTKKTIHTPNSEQRK---TYGYIEPVVDYKWARQRALEEYA 464

Query: 476 AA 477
            A
Sbjct: 465 TA 466


>gi|262369609|ref|ZP_06062937.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           johnsonii SH046]
 gi|262315677|gb|EEY96716.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           johnsonii SH046]
          Length = 475

 Score =  330 bits (847), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 183/468 (39%), Positives = 267/468 (57%), Gaps = 14/468 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W R DLRI D+ AL+ A  +    ++A+ I +P+QW  H  +A +       L  +
Sbjct: 1   MNIIWFRQDLRIHDHAALWHASQH--GPMLALVILSPQQWLLHHDAAVKIDLYVRQLHDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           ++SL+Q  I         + D    L S C   +V K+F N +  +NE++RD  +++ L 
Sbjct: 59  KQSLAQLNIPLLILNIPLWQDIPPQLSSLCHTLQVQKIFANIEMGVNELKRDAEVQQCLN 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---L 184
           Q  +    F D  L P  SI N + + Y+V+  F+K   + L     +  P+P+ +   L
Sbjct: 119 QQHIEFTLFQDRTLFPLNSIRNQSDKPYQVFGAFKKTCYERLNIGLPQCYPLPSAQQPIL 178

Query: 185 TGPVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                 + IP               I   +P  E  AL +L  F   KV  Y ++RD P 
Sbjct: 179 LPADLNAAIPHIESLIHVNTNELNQIKAYWPETEIYALSVLDDFIDHKVSDYQKERDFPF 238

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  TSQLS YL++G++S RQC N L        +   +G  +WL+EL+WREFY+H++  +
Sbjct: 239 LNSTSQLSAYLNLGIVSIRQCLNALFRAQHGQFMIDNTGQQTWLDELLWREFYQHILFDF 298

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T++I W      L AW+QG TG PI+DA MRQL   GWMHNR+RMI A
Sbjct: 299 PQVSKHLPFKANTQRIVWRDSPEDLNAWQQGRTGIPIVDAGMRQLLATGWMHNRVRMIVA 358

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWR+GE++FM  L DGDLA+NNGGWQW ASTG D+VPYFR+FNP  Q ++F
Sbjct: 359 MFLTKNLLIDWRLGEQWFMQHLADGDLAANNGGWQWCASTGTDAVPYFRVFNPVSQSQKF 418

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           D  G +IR WLPEL ++  + IH P++   + ++ L+YP PIVD K +
Sbjct: 419 DSNGDYIRQWLPELAHLDAKSIHEPYA--KQQNMELDYPQPIVDLKSS 464


>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
 gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
          Length = 479

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 193/495 (38%), Positives = 253/495 (51%), Gaps = 48/495 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M +H  W R DLR+ DN AL AA   S   VI VFI           S  ++ F+  SL 
Sbjct: 1   MLIH--WFRRDLRLRDNTALLAAADASGGAVIPVFIFDDAILGGRFASPARTQFLLDSLT 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L   G+    H      + +  L +   +     + +NR Y    V+RD  +++ 
Sbjct: 59  ALDGELRSLGL----HLVLRRGEPLTTLMALLRESGAHGVTWNRDYTPYAVQRDSTIKRE 114

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---------- 175
           L+      +S+ D+V+     ++  A Q Y VYTP+ K     L    +R          
Sbjct: 115 LRAAGYRAESYKDAVIFEMNEVVTAAGQPYTVYTPYAKRWRARLESEPVRVQGVPELTAI 174

Query: 176 ----SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
               S P+PA+    P  P+++PRF              GE  A   L  F    +  Y 
Sbjct: 175 PLPASDPLPALNDLLPTAPTSVPRF------------ATGETAARAALEHFIHNAIANYA 222

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREF 290
             RD+ AI GTS+LSPYL  GVLSPRQC        V     P   G  SW+ ELIWREF
Sbjct: 223 TARDLVAIAGTSRLSPYLRFGVLSPRQC-------VVAARAAPSGPGPESWIGELIWREF 275

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y  ++  +P    G  F P  ++I W  D  L  AW+QG TG+PI+DAAMRQL   GWMH
Sbjct: 276 YIQVLYHFPHALRGS-FKPVYDRIVWPNDPALFAAWQQGRTGYPIVDAAMRQLQQEGWMH 334

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RMI ASFL KDLL+DWR GE +FM  L+DGD A+NNGGWQWAA TG D+ PYFRIFN
Sbjct: 335 NRARMIVASFLTKDLLIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPYFRIFN 394

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QG++FDP G ++R ++PEL  VPT+YIH PH             +  +Y  P+VDH 
Sbjct: 395 PVSQGQKFDPDGAYVRRYVPELAGVPTRYIHEPHKMPPSEQVRAGVQIGRDYSAPVVDHA 454

Query: 465 KACHHTLNQYYAAKK 479
                 L  Y +A +
Sbjct: 455 TQRLRALELYRSATR 469


>gi|213613247|ref|ZP_03371073.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 339

 Score =  330 bits (845), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 162/343 (47%), Positives = 227/343 (66%), Gaps = 6/343 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LP-SVICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
           S  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHLM +YP++C  
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHLMTWYPALCKH 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  G
Sbjct: 297 QPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATG 339


>gi|89094232|ref|ZP_01167174.1| Deoxyribodipyrimidine photolyase [Oceanospirillum sp. MED92]
 gi|89081487|gb|EAR60717.1| Deoxyribodipyrimidine photolyase [Oceanospirillum sp. MED92]
          Length = 468

 Score =  325 bits (834), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 187/475 (39%), Positives = 267/475 (56%), Gaps = 16/475 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAAC-HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + LVW RNDLR  D+ ALY AC  N+   V+ V I TP QW+    S  +  F  A+L  
Sbjct: 1   MKLVWFRNDLRTGDHHALYQACMDNTGEGVLGVAIITPVQWKIQDESKSRVQFWRANLES 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKR 126
           +   L    I     +  +  +    L     + +V+ +++NR+Y + E +RD  ++   
Sbjct: 61  LSCDLQSLNIPLLILRVPSNREIPALLVELAKRYQVSGVYFNREYPLYEQQRDNAVISAM 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +  V C SFD  V+LP G++LN     +KV+TPF K   Q  + ++ + LPVP ++   
Sbjct: 121 AEISVPCLSFDSDVVLPAGTVLNQQGLPFKVFTPFSKRWRQQYLTSNPQPLPVPPVQAKL 180

Query: 187 PVTPSNIPRFFDYPFQA----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            ++  ++P+   YP           +P G + A  +L+ +  EKV  Y + RD PA  GT
Sbjct: 181 DISTDSVPKEICYPITVGADWSSERWPAGTEAAHKLLQHYVLEKVADYKQSRDFPAEPGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYLS+GVLS RQC   ++  F     +P+     W+ ELIWREFYRHL+  +P + 
Sbjct: 241 SSLSPYLSVGVLSTRQCLAAMQAYF----DQPEWFDSQWVTELIWREFYRHLLVLFPEMN 296

Query: 303 MGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             +PF P  E K+ W  D  L QAW +G TGF I+DA M++L   GWMHNR+RMITASFL
Sbjct: 297 RWEPFKPEVEEKLSWQYDESLFQAWCKGETGFAIVDAGMKELLETGWMHNRVRMITASFL 356

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L  DWR+G  +FM  L+DGD ASN GGWQW+AS G D+ PYFRIFNP  Q +RFD +
Sbjct: 357 TKLLRQDWRLGARFFMQHLIDGDFASNLGGWQWSASVGADAAPYFRIFNPMRQAERFDAK 416

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           G ++  ++P L  + +   H P         S + P PI+D+     ++L+ Y A
Sbjct: 417 GRYVGQYVPSLQGLTSVQQHDPMF-----AASYSRPTPIIDYAYERQYSLDAYKA 466


>gi|326794343|ref|YP_004312163.1| deoxyribodipyrimidine photo-lyase [Marinomonas mediterranea MMB-1]
 gi|326545107|gb|ADZ90327.1| Deoxyribodipyrimidine photo-lyase [Marinomonas mediterranea MMB-1]
          Length = 497

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 186/495 (37%), Positives = 262/495 (52%), Gaps = 31/495 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIA---------------------VFIATP 45
           M+  LVWLRNDLR+TD+ ALY A     A+ I                      V   TP
Sbjct: 1   MATQLVWLRNDLRLTDHPALYGASDMGGAQSITTASEKADSTAASTTTTPDVHIVICMTP 60

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105
           EQW  H  SA +     A +  + K   QKGI+      + F +    L   C   +   
Sbjct: 61  EQWCAHSESAAKQSLRVALIDALGKECEQKGIMLHTLHLNTFSECAPALLDLCQSLKCES 120

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
           +++  +   +E +RD  +E+ L    +        L+    +LN+    +KV+TP+ +  
Sbjct: 121 IWWQSELPFDEQQRDSQVERLLSEHGVTVHHLAPDLIVSQPLLNNQGTPFKVFTPYYRRW 180

Query: 166 IQNLVQADLRSLPVPAIRLTGPV------TPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
           I+ L      S P    +  G        T  NI   +    +  D ++P    +    L
Sbjct: 181 IEILKSNAFYSYPEMPSKAKGTYGDVNHSTAINISNEYFANERYRDDIWPANYAHIKETL 240

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
             FC  K   Y   R+IP+  GTS LSPYL++G + PR+  + LK  +  +  +      
Sbjct: 241 DSFCSLKEADYEAVREIPSTAGTSLLSPYLALGAVGPRELLSALKNGY-QIREEGYWADS 299

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
            WL EL WR+FY+ LM  +P + M + F P TE+I W+K+    QAW  G TGFPI+DAA
Sbjct: 300 IWLKELAWRDFYKQLMWHFPRLSMRQAFKPETEQIIWSKNDTHFQAWCDGQTGFPIVDAA 359

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQLN  GWMHNRLRMITASFL K L +DWR GE+YFMS+L+DG+ A+NNGGWQW+ASTG
Sbjct: 360 MRQLNQTGWMHNRLRMITASFLTKLLFIDWRKGEDYFMSKLIDGEFAANNGGWQWSASTG 419

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
            D+VPYFR+FNPT Q + +D  G FIR ++PEL+ +  + IH+P      +     YP P
Sbjct: 420 CDAVPYFRVFNPTRQSETYDTNGHFIRRFVPELSALSDKEIHSPSV---SHRQQCRYPEP 476

Query: 460 IVDHKKACHHTLNQY 474
           I+D+K A  H ++ +
Sbjct: 477 IIDYKSARKHAIDAF 491


>gi|46107828|ref|XP_380973.1| hypothetical protein FG00797.1 [Gibberella zeae PH-1]
          Length = 635

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 186/488 (38%), Positives = 275/488 (56%), Gaps = 32/488 (6%)

Query: 13  WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLRI+DN+AL  A      +   +IA++I +P+ +  H  +  +  F+  +L  ++
Sbjct: 146 WFKMDLRISDNRALALASDKAKEAGVPLIALYIISPQDYEAHLRAPVRIDFMLRTLSVIK 205

Query: 70  KSLSQKGI---VFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + L++  I   V    +  +  D I E +D +      + L+ N +YE++E+RR+  + K
Sbjct: 206 EDLAKLDIPLYVETVEKRKHLPDRILELMDEWG----ASHLYANMEYEVDELRREAAMIK 261

Query: 126 RLQHRVICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSL---- 177
                   K+F+   D+ ++PPG +   A + Y VYTP+ K  I ++ +  DL  L    
Sbjct: 262 DFAEN--GKAFEVVHDTCIVPPGELHTGAGKQYAVYTPWFKTWIAHIHENLDLLELYEPP 319

Query: 178 ---PVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
              P  A +    +  + IP      R  D   + +  ++P GE  A   L KFC+E++ 
Sbjct: 320 EKNPDSARKKFKKLFNAEIPEAPKSKRLGDEEKERLRSLWPCGEHEAKKRLDKFCEERIG 379

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIW 287
            Y E+R+IPA   TS LS +L+ G +S R C    ++      L     G  +W++E+ W
Sbjct: 380 NYHEKRNIPADAATSSLSVHLASGTISARTCVRTARDRNKTKKLNGGNDGIQTWISEVAW 439

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+FY+H++  +P VCM KPF P    I W+ D+    AW +G TGFPI+DAAMRQ+NTIG
Sbjct: 440 RDFYKHVLVNWPYVCMNKPFKPEYSNISWSYDNDHFAAWCEGRTGFPIVDAAMRQMNTIG 499

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNR RMI ASFL KDLL+DWR GE+YFM  L+DGD ASNNGGW ++AS G D  PYFR
Sbjct: 500 YMHNRCRMIVASFLAKDLLLDWRKGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFR 559

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKA 466
           IFNP +Q ++FDP G +IR W+PEL ++  + IH P++           YP PIV HK  
Sbjct: 560 IFNPLLQSEKFDPDGDYIRKWVPELKDLDNKAIHDPYNRKAGPQAKKKGYPEPIVTHKDC 619

Query: 467 CHHTLNQY 474
               L  Y
Sbjct: 620 RERALAAY 627


>gi|310798711|gb|EFQ33604.1| DNA photolyase [Glomerella graminicola M1.001]
          Length = 591

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/497 (36%), Positives = 267/497 (53%), Gaps = 28/497 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQS 58
           KA       + W + DLR  DN++L  A   +      +IA+FI +P+ +  H  +  + 
Sbjct: 90  KAVKPKDAVVHWFKMDLRTADNRSLSLASEKAKEAGVPLIAMFIVSPQDYEAHLTAPIRV 149

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  +L  ++  L++  I              + +     Q   + LF N +YE++E+R
Sbjct: 150 DFMLRTLHTLRGDLAKLDIPLYVETVEKRKRIPDRIAELMDQWGASHLFANMEYEVDELR 209

Query: 119 RDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRS 176
           R+  + +    R +  +   D+ ++PPG + + + + Y VYTP+ +A ++++    DL  
Sbjct: 210 REAKMVRMFADRGLSYEVLHDTCVVPPGQLTSGSGKQYAVYTPWFRAWVRHVHDNLDLLE 269

Query: 177 LPVPAIRLTGPVTPSNIPRFFDY--PFQAID------------PMFPIGEQNALHILRKF 222
           L  P  +   P T       FD   P +  D             +FP GE  A   L KF
Sbjct: 270 LCHPPAK-NPPSTRDKFNSLFDTDIPSEIADRKLDDEQKKRFRAIFPAGEHEARSRLEKF 328

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC----WNRLKEEFVDLLIKPKSGA 278
           C+EKV  Y  +R+IP   GTS LS +L+ G +S R C     +R K + +D  I+   G 
Sbjct: 329 CEEKVGQYHNKRNIPHDSGTSNLSVHLASGTISSRTCVRYARDRNKTKKLDAGIE---GI 385

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
             W++E+ WR+FY+H++  +P VCM KP+ P    IEW+ D    +AW  G TGFPI+DA
Sbjct: 386 RVWISEVAWRDFYKHVLVHWPYVCMNKPYKPEYANIEWSYDMDNFKAWCAGQTGFPIVDA 445

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           AMRQ++ +GWMHNR RMI A FL KDLL+DWR+GE YFM  L+DGD ASNNGGW ++AS 
Sbjct: 446 AMRQMHAMGWMHNRCRMIVACFLAKDLLIDWRMGERYFMENLIDGDFASNNGGWGFSASV 505

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYP 457
           G D  PYFRIFNP +Q ++FDP G +IR W+PEL  +  + IH P+            YP
Sbjct: 506 GVDPQPYFRIFNPLLQSEKFDPDGEYIRKWVPELKGITGKAIHDPYGRGAGAQAKKTGYP 565

Query: 458 LPIVDHKKACHHTLNQY 474
             IVDHK      L  Y
Sbjct: 566 QQIVDHKGCRERALAAY 582


>gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
 gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
          Length = 459

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 192/477 (40%), Positives = 252/477 (52%), Gaps = 29/477 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M +H  W R DLR++DN AL AA   S   V+ V+I  P        S  +S F+ A L 
Sbjct: 1   MIIH--WFRRDLRLSDNPALSAAALASGGHVLPVYILDPTLLNGLWASPARSAFLIAGLR 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L   G+           + +  L     +   + + +NR Y     RRD+ +E  
Sbjct: 59  ALDAQLQHHGLRL----IVRHGEPVATLLHLVAETGASAVTWNRDYSPYSRRRDQAIEAA 114

Query: 127 LQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L H   C  +   D  + PP  IL      Y VYTP+ +     L  ADLR +  P ++ 
Sbjct: 115 L-HAAGCAVQHTHDVAICPPDQILTKNATPYSVYTPYARQWRTWLAHADLRPVAAPILQP 173

Query: 185 TGPVTPSN-IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              +  S+ IP        A  P+ P GE  A  IL +F +  +  Y  QRD+PA+ GTS
Sbjct: 174 CRDLPVSHAIPDLL-----APHPLPPAGELAAQTILDEFTRTSLRTYATQRDLPAVPGTS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G+++ RQC    +         P  GA +W+ EL WR+FY  ++  +P V  
Sbjct: 229 RLSPYLRFGMIAVRQCLAVAQAH-------PGPGADTWIAELAWRDFYIQVLFHHPHVLR 281

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G  F P  + + W  D  L  AW  G+TG+P++DAAMRQL   GWMHNR RMI ASFL K
Sbjct: 282 GA-FKPQYDDLAWENDPDLFAAWCAGHTGYPMVDAAMRQLQQEGWMHNRARMIVASFLTK 340

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFM  LLDGD A+NNGGWQWAASTG D+ PYFRIFNPT QG++FDP G 
Sbjct: 341 DLLIDWRWGERYFMQMLLDGDPAANNGGWQWAASTGTDAQPYFRIFNPTCQGQKFDPHGD 400

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------NYPLPIVDHKKACHHTLNQY 474
           +IR +LPEL  VP   IH PH       +        +YP P+VDH +     L  Y
Sbjct: 401 YIRRYLPELAGVPNHKIHTPHLLSASEQMRAGVRIGHDYPAPLVDHAQRRERALGIY 457


>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
 gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
          Length = 479

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 191/498 (38%), Positives = 257/498 (51%), Gaps = 50/498 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M +H  W R DLR+ DN AL AA   +   V+ VFI      R    S  ++ F+   L 
Sbjct: 1   MYIH--WFRRDLRLRDNTALMAAATAAGGAVVPVFIFDDAILRGRFASPARTQFLLDCLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L   G+    H      D +  L     +   + + +NR Y    VRRD  +++ 
Sbjct: 59  ALDAELRTFGL----HLVVRRGDPLRTLFDVLRESGASGVTWNRDYTPYAVRRDTAIKQA 114

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+       SF D+V+     +     + Y VYTP+ K     L                
Sbjct: 115 LREAGYEAHSFKDTVIFEMKEVATADGRPYTVYTPYAKRWRSRLAAE------------- 161

Query: 186 GPVTPSNIPRFFDYPFQAIDPM----------------FPIGEQNALHILRKFCKEKVYY 229
            PVT  ++PR    P    +P+                FP GE  AL  L +F +  +  
Sbjct: 162 -PVTVQDMPRLATIPLPVSEPLPHLTDLLPDAPATLPRFPAGEAVALEALERFVRGPLAS 220

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RD+ A+ GTS+LSPYL +GVLSPRQC             +      SW+ ELIWR+
Sbjct: 221 YAQGRDLMAVAGTSRLSPYLRLGVLSPRQCVAAALAAPPGPGPE------SWIGELIWRD 274

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FY  ++  +P    G  F P   +I+W  D  L  AW+QG TG+PI+DAAMRQL   GWM
Sbjct: 275 FYVQVLYHFPHALRGS-FKPAYNRIDWPNDPVLFAAWQQGLTGYPIVDAAMRQLQREGWM 333

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RMI ASFL KDLL+DWR GE +FM  L+DGD A+NNGGWQWAA TG D+ P+FRIF
Sbjct: 334 HNRARMIVASFLTKDLLIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPFFRIF 393

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSL----NYPLPIVDH 463
           NP  QG++FDP+G ++R ++PEL NVPT+YIH PH  S  ++    +    +YP PIVDH
Sbjct: 394 NPVSQGQKFDPEGAYVRRYVPELVNVPTRYIHEPHKMSLAEQRKAGVLIGRDYPAPIVDH 453

Query: 464 KKACHHTLNQYYAAKKQS 481
                  L  Y AA + +
Sbjct: 454 ATQRTKALELYRAATRHN 471


>gi|88800847|ref|ZP_01116402.1| putative deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
 gi|88776420|gb|EAR07640.1| putative deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
          Length = 465

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 180/476 (37%), Positives = 273/476 (57%), Gaps = 27/476 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASL 65
             LVW RNDLR++D++AL+ A + +  +   V A+F  +  QWR HG    +    +++L
Sbjct: 2   TQLVWFRNDLRVSDHEALFQALNRAKQQQTPVRALFFWSDAQWRSHGAGDAKIAATFSAL 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + L++ GI       S + +  E + +YC   ++T + Y+ +   NE+RRD  + +
Sbjct: 62  QALHQKLAKLGIPLDVLSVSWWTECAEQMVNYCQSHQITAIHYHTEPGWNELRRDDRVAQ 121

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPA 181
           +L   V    + D   + P   L    Q+YKV+T ++K+L++      L + P     PA
Sbjct: 122 QLSKSVELHRYHDLYFIDPAHHLTQQGQVYKVFTAYKKSLLRQFSIDHLATFPPRKAGPA 181

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           ++++ P+   ++P + + P Q      P+ E  AL  L  FC+E V  Y ++RD PA  G
Sbjct: 182 LKVS-PLAMKDLPNWQN-PLQ-----LPVTEDQALTRLDAFCEE-VRDYADRRDFPADNG 233

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLS  L++G  S RQ  + L    + L       + ++ +E+IWR+FY++L+   P +
Sbjct: 234 TSQLSAALALGCTSSRQVAHTLHRHHISL------ASDTFFSEIIWRDFYKYLLFHTPRL 287

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           C+G+P+    +   W K+   L+ W++G TG PI+DAAMRQL   GWMHNRLRM+T  +L
Sbjct: 288 CLGEPYNEKWDAFPWQKNETWLERWREGKTGVPIVDAAMRQLRETGWMHNRLRMVTGMYL 347

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK L  DWR GE +F   L D D A+NNGGWQW ASTG D+VPYFRIFNP  Q KRFDP 
Sbjct: 348 VKILQQDWRQGEAWFAEHLADFDFAANNGGWQWVASTGVDAVPYFRIFNPYQQSKRFDPN 407

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTLNQYYA 476
           G FI  ++ ELN+V    +H       K  LS+ +YP P+ D+ KA   TL+++ A
Sbjct: 408 GQFILTFVTELNDVKPALLHD-----HKRALSVSSYPKPLTDYSKARQDTLDKFKA 458


>gi|126642518|ref|YP_001085502.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
           [Acinetobacter baumannii ATCC 17978]
          Length = 381

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 171/372 (45%), Positives = 231/372 (62%), Gaps = 13/372 (3%)

Query: 106 LFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164
           ++ N +  +NE++RDK ++  L +H      F D  + P  SI N + Q Y+V++ F+KA
Sbjct: 1   MYANIEIGVNELKRDKTVQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKA 60

Query: 165 LIQNLVQADL-RSLPVPAIRLTGP--------VTPSNIPRFFDYPF-QAIDPMFPIGEQN 214
               L  + L +  PVP  +   P        +    I + F     +    ++P+GEQ 
Sbjct: 61  CYTKLDTSGLPQCYPVPNKQNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQY 120

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           AL  L +F +E V +Y  +RD P IQ TS+LSPYL+IG+LS RQC   L           
Sbjct: 121 ALEQLDQFIEESVCHYKVERDFPNIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLV 180

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
             G  +WL+EL+WREFY+H++  +P V    PF   T+KI+WN +   L AW+ G TG P
Sbjct: 181 NEGQQTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIP 240

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           I+DA MRQL   GWMHNR+RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW
Sbjct: 241 IVDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQW 300

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
            ASTG D+VPYFRIFNP  Q K+FDP+G +IR W+ EL ++  + IH P+S   K DL L
Sbjct: 301 CASTGTDAVPYFRIFNPITQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGL 358

Query: 455 NYPLPIVDHKKA 466
           NYP PIVD K+ 
Sbjct: 359 NYPKPIVDLKET 370


>gi|115396894|ref|XP_001214086.1| deoxyribodipyrimidine photo-lyase [Aspergillus terreus NIH2624]
 gi|114193655|gb|EAU35355.1| deoxyribodipyrimidine photo-lyase [Aspergillus terreus NIH2624]
          Length = 583

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 181/498 (36%), Positives = 270/498 (54%), Gaps = 25/498 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A  VH  W ++DLR+ DN+AL+ A       +  +I ++I +PE    H  S  +    
Sbjct: 90  NAAVVH--WFKSDLRLHDNRALHKAAQVAREHNLPLIGLYILSPEDLTAHLSSPARVDLT 147

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
             +L Q+Q+ L++  I   Y +      +I   +   C +     LF N +YE++E+RR+
Sbjct: 148 LRTLAQLQRDLNESDIPL-YMETQERRQAIPARIVELCQKWGANHLFANLEYEVDELRRE 206

Query: 121 -KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-------- 171
            +L+    ++ +   +  D+ ++PPGS+ +   + Y VY+P+ +A +  L +        
Sbjct: 207 ARLIRLCAKNGIRFDALHDTCVVPPGSLSSQQGKQYAVYSPWYRAWVAFLKENPDYLEVS 266

Query: 172 -------ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
                   D R           P  P+N  +  D   + +  ++P GE  ALH L  F K
Sbjct: 267 EEPGANSGDARKHFAELFDSEVPQAPAN-KQLSDSQKEHLSALYPAGEHEALHRLETFLK 325

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           EK   Y E R+I A Q TS LSPY + G LS R    + +    +LL + + G  SW++E
Sbjct: 326 EKAVEYDEDRNILAGQHTSVLSPYFASGSLSARTAVVQARRANKNLLDRNEPGYMSWISE 385

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           + WR+FY+H++  +P +CM K F P    +EW  D    QAW +G TG P++DAAMRQLN
Sbjct: 386 VAWRDFYKHVLVQWPFICMNKCFKPEFTDLEWEYDEIKFQAWCEGRTGVPVVDAAMRQLN 445

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
              WMHNR RMI +S+L KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  P
Sbjct: 446 HDAWMHNRARMIVSSYLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQP 505

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDH 463
           YFRIFNP  Q +RFD +G +IRHW+PEL  +    IH P+     +      YP  +VDH
Sbjct: 506 YFRIFNPLRQSERFDAEGEYIRHWVPELQGIEGAAIHDPYGRGAGDQAGRQGYPHALVDH 565

Query: 464 KKACHHTLNQYYAAKKQS 481
            ++ +  L +Y  A ++ 
Sbjct: 566 SQSRNRALERYKRASQKE 583


>gi|119497467|ref|XP_001265492.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya
           fischeri NRRL 181]
 gi|119413654|gb|EAW23595.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya
           fischeri NRRL 181]
          Length = 584

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 182/501 (36%), Positives = 267/501 (53%), Gaps = 23/501 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQS 58
           +A  A +  + W ++DLR+ DN+AL   Y      +  +IA++I +P+    H +S  + 
Sbjct: 85  RAIRANNAVVYWFKSDLRLYDNRALRLAYETAKEHNIPLIALYILSPQDLTAHLLSPARV 144

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEV 117
             I  +L Q+++ LS+  I   Y +      +I + +   C Q     L+ N +YE++E+
Sbjct: 145 DLILRTLHQLKRDLSELDIPL-YLETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDEL 203

Query: 118 RRD-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----- 171
           RR+ KL+    ++ +   +  D+ ++PPG + +   + Y VY+P+ +  +  L +     
Sbjct: 204 RREAKLVRLCAKNGIKFDTAHDACVVPPGQVTSQQGKQYAVYSPWYRTWLAYLNENPDCL 263

Query: 172 ----------ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
                      D R           P  P N  +  +   Q +  ++P GE  AL  L  
Sbjct: 264 ELSEEPGSNPGDARKYFKELFDSEVPAAPEN-KQLSEEEKQHLGQLYPAGEHEALRRLEA 322

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           F +EKV  Y E R++ + Q TS LSPY + G+LS R      +      L     G   W
Sbjct: 323 FLEEKVRDYAEARNMVSGQTTSILSPYFASGLLSARTAIEHARRANKGSLQHGDPGLVHW 382

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + E+ WREFYRH++  +PS+CM K F P    +EW  D      W +G TGFPI+DAAMR
Sbjct: 383 IGEVAWREFYRHVLVHWPSICMNKCFKPEFTNLEWEYDEDRFTTWCEGKTGFPIVDAAMR 442

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           Q+    WMHNR RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D
Sbjct: 443 QVKQDKWMHNRTRMIVASFLSKDLLIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVD 502

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPI 460
             PYFRIFNP  Q +RFDP G +IR W+PEL ++    IH P++     +   N YP P+
Sbjct: 503 PQPYFRIFNPLRQSERFDPDGEYIRKWVPELRDIKEAAIHEPYARGAGANAEKNGYPRPM 562

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
           VDH K+    L++Y  A K  
Sbjct: 563 VDHSKSRDLALHRYKRACKNG 583


>gi|315046714|ref|XP_003172732.1| deoxyribodipyrimidine photo-lyase [Arthroderma gypseum CBS 118893]
 gi|311343118|gb|EFR02321.1| deoxyribodipyrimidine photo-lyase [Arthroderma gypseum CBS 118893]
          Length = 589

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 179/484 (36%), Positives = 262/484 (54%), Gaps = 19/484 (3%)

Query: 13  WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR+ DN++L   Y+   + +  +I ++I +PE    H  S  +   +  +L  ++
Sbjct: 102 WFKQDLRLQDNRSLHRAYSLARSHNIPLICLYIFSPEDLTAHLCSRPRVDLMLRTLATLK 161

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L++K I           +    +   C +     +F N +YE++E+RR+  L +    
Sbjct: 162 SELAKKDIPLYMESQEKRKEIPSRIVELCKKWGAKHIFANLEYEVDELRREARLVRLCAE 221

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVP---- 180
           + I   + DD+ ++ PG++     + Y VYTP+ ++ +  L Q     DL   P      
Sbjct: 222 QAIKFATEDDTCVVDPGALATQQGKQYAVYTPWYRSWVAYLKQHPENLDLVDAPGANAGD 281

Query: 181 AIRLTGPVTPSNIPRFFD------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           A +    +  S++P+  D         Q    M+P GE  A+  LRKF  EK   Y ++R
Sbjct: 282 ARKDFKDLFDSDVPKAPDQMKLSETEQQRFRDMYPEGEHEAMQRLRKFLSEKGRQYHDKR 341

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D  + Q TS LSPY S G LS R      K+   + L    +G  +W++E+ WR+FY+H+
Sbjct: 342 DFMSSQSTSVLSPYFSCGALSARTAVRIAKDTNSNELAGKNAGYTTWISEVAWRDFYKHV 401

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +CM K F P    +EW  D     AW +G TGFPI+DAAMRQL    WMHNR R
Sbjct: 402 LVHWPFICMNKCFKPEFTDLEWEYDLTQFDAWCEGRTGFPIVDAAMRQLKHCAWMHNRTR 461

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI +SFL KDLL+DWR GE++FM  L+DGD ASNNGGW + +STG D  PYFRIFNP  Q
Sbjct: 462 MIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNNGGWGFGSSTGVDPQPYFRIFNPLRQ 521

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQ 473
            +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L +
Sbjct: 522 SERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAQKIAEKNGYPKPIVNHSESRGKALER 581

Query: 474 YYAA 477
           Y  A
Sbjct: 582 YKKA 585


>gi|171694686|ref|XP_001912267.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947585|emb|CAP59746.1| unnamed protein product [Podospora anserina S mat+]
          Length = 734

 Score =  319 bits (817), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 179/495 (36%), Positives = 268/495 (54%), Gaps = 23/495 (4%)

Query: 2   KATTAMSVHLV-WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQ 57
           +A T ++  +V W + DLR TDN AL+ A   + A    +IA++I +P+ +  H  +  +
Sbjct: 233 RANTPVAGAVVHWFKMDLRTTDNTALFCASQKAQAAGVPLIALYILSPQDFEAHLTAPVR 292

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+  +L  ++K L+   I           +    +     +   + LF N +YE++E+
Sbjct: 293 VDFMLRTLEILKKDLAALDIPLWVETVKKRKEIPSRIVELMGEWGASHLFANMEYEVDEL 352

Query: 118 RRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           RRD  + + L  R ++     D+ ++PPG + + +   Y VYTP+ +  +++ V  +L  
Sbjct: 353 RRDARMARLLAKRGLVMDVLHDTCIVPPGRLTSGSGGQYAVYTPWFRTWVRH-VHENLDL 411

Query: 177 LPVPAIRLTGP-VTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRK 221
           L +       P  T   +   F+ P               +    ++P GE  A+  L K
Sbjct: 412 LELVESPTKNPESTRQKLAHLFECPIPSAPENKTLSKEDRERFRALWPAGEHEAMKRLSK 471

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFS 280
           F  + +  Y + R+IP+  GTS LS + + G LS R      +       L     G  +
Sbjct: 472 FADQAIGKYQQNRNIPSNPGTSSLSVHFASGTLSARTAVRTARGRNNTKKLDGGNEGIQT 531

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           W+ E+ WR+FY+H++  +P +CM KPF P    IEW+ +     AWK+G TGFPI+DAAM
Sbjct: 532 WIREVAWRDFYKHVLVQWPYICMNKPFKPEYANIEWSYNMEHFDAWKEGRTGFPIVDAAM 591

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQL ++GW+HNR RMI ASFL KDLL+DWR+GE+YFM  L+DGD ASNNGGW ++AS G 
Sbjct: 592 RQLRSMGWVHNRCRMIVASFLCKDLLLDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGV 651

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPLP 459
           D  PYFRIFNP +Q ++FDP G +IR W+PEL  V  + IH P+        +   YP  
Sbjct: 652 DPQPYFRIFNPLLQSEKFDPDGEYIRKWVPELKEVKGKAIHDPYGRGAAALAIKAGYPKH 711

Query: 460 IVDHKKACHHTLNQY 474
           IVDHK A   TL  Y
Sbjct: 712 IVDHKGARERTLAAY 726


>gi|320585730|gb|EFW98409.1| deoxyribodipyrimidine photo-lyase [Grosmannia clavigera kw1407]
          Length = 584

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/490 (35%), Positives = 264/490 (53%), Gaps = 25/490 (5%)

Query: 13  WLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W ++DLR  DN+AL  A   +      +I +++ +P+ W  H  +  +  F+  +L  +Q
Sbjct: 91  WFKSDLRTLDNRALAMASEKAQMAGVPLIGLYVVSPQDWEAHLTAPVRVDFVLRTLAVLQ 150

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L++ GI                + S   +     LF N +YE++E+RR+  + ++   
Sbjct: 151 RDLAELGIPLWMETVEQRKQIPHRILSLMDKWGANHLFANMEYEVDELRRETAMVRQCAA 210

Query: 130 RVICKSF-DDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPV-------- 179
           +    +   D  ++PPG++ + +  + Y VYTP+ +A  Q++   +    P+        
Sbjct: 211 QGKSMAVVHDICVVPPGNLTSKSSGKAYAVYTPWFRAWKQHVYTNEHILGPIDNPKTQAK 270

Query: 180 -----PAIRLTGPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                PA  +  P+  +   +      +A     ++P GE  A+  L  FC E+V  Y +
Sbjct: 271 TKTRWPAELMDCPIPSAPKGKTLGTKAEAKRFCTLWPAGEHEAMRRLEHFCDERVADYSD 330

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFY 291
           +RD PA++ TS LSPYL+ GVLS R      ++      +   +  F  W++E+ WR+FY
Sbjct: 331 ERDFPAVEATSSLSPYLAAGVLSARTVIRTARDRTGAKTLDDGTEGFRVWISEVSWRDFY 390

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RH++  +P VC  KPF      I W+ +     AW +G TG+PI+DAAMRQLN  GW+HN
Sbjct: 391 RHILVAWPHVCFNKPFKLAYSGIAWSYNHDHFTAWTEGRTGYPIVDAAMRQLNKQGWLHN 450

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL KDLL+DWR+GE YFM  L+DGD ASN+GGW ++AS G D  PYFRIFNP
Sbjct: 451 RCRMIVASFLAKDLLLDWRLGERYFMEHLVDGDFASNSGGWGFSASVGVDPQPYFRIFNP 510

Query: 412 TIQGKRFDPQGTFIRHWLPELNN---VPTQYIHAPHS-WLDKNDLSLNYPLPIVDHKKAC 467
            +Q +RFDP GT+IR W+PEL +      + IH P+         +  YP PIV HK+A 
Sbjct: 511 ILQSERFDPDGTYIRRWVPELQDSGIADNKAIHEPYGRGFGDQARAAGYPEPIVQHKQAR 570

Query: 468 HHTLNQYYAA 477
              L  Y  A
Sbjct: 571 EAALEAYKKA 580


>gi|302404190|ref|XP_002999933.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum
           VaMs.102]
 gi|261361435|gb|EEY23863.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum
           VaMs.102]
          Length = 589

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 177/491 (36%), Positives = 266/491 (54%), Gaps = 26/491 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNS-DAKV--IAVFIATPEQWRQHGISARQSHFIY 62
           A  VH  W + DLR++DN +L  A   + DA V  IA++I +P+ +  H  +  +  F  
Sbjct: 94  AAVVH--WFKMDLRLSDNTSLRLASERAKDAGVPLIAMYIISPQDFEAHLTAPIRVDFTL 151

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  ++  L++  I              + +     +   T LF N +YE++E+RR+  
Sbjct: 152 RTLEILKHDLAKLDIPLHIETVEKRRQISDRIVELMGEWGATHLFANMEYEVDELRREAK 211

Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR------ 175
           L +    + +  ++  D+ ++PPG +     + Y VYTP+ ++ ++++ +   R      
Sbjct: 212 LVRTFADKGMSFEAVHDTCVVPPGQLQTGTGKQYAVYTPWYRSWMRHVHENPDRLELFDH 271

Query: 176 --SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKE 225
               P  A    G +  S IP   + P + +          +FP GE  A   L KFC  
Sbjct: 272 PNKNPSSAKERFGNLFASEIPE--EVPNKTLGAEEKKRFRALFPAGEHAARERLDKFCDG 329

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNE 284
            +  Y ++R+IP   GTS LS +L+ G +S R C    ++      +   +G   +W++E
Sbjct: 330 SISSYADRRNIPGDNGTSSLSMHLASGTISSRTCVRTARDRNKTKKLDGGNGGIQTWISE 389

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           + WR+FY+H++  +P VCM KPF P    IEW+ +    +AW +G TGFPI+DAAMRQ+ 
Sbjct: 390 VAWRDFYKHVLVHWPYVCMNKPFKPEYANIEWSYEKDDFKAWCEGKTGFPIVDAAMRQMI 449

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            +GWMHNR RMI ASFL KDLL+DWR+GE +FM  L+DGD ASNNGGW ++AS G D  P
Sbjct: 450 HVGWMHNRCRMIVASFLCKDLLIDWRMGERFFMEHLVDGDFASNNGGWGFSASVGVDPQP 509

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPLPIVDH 463
           YFRIFNP +Q ++FDP G +IR W+PEL  V  + IH P+            YP PIV H
Sbjct: 510 YFRIFNPLLQSEKFDPDGEYIRKWVPELAGVKGKAIHDPYGRGAGPQAKKKGYPEPIVAH 569

Query: 464 KKACHHTLNQY 474
           K      L +Y
Sbjct: 570 KDVRERALTEY 580


>gi|70990122|ref|XP_749910.1| deoxyribodipyrimidine photo-lyase Phr1 [Aspergillus fumigatus
           Af293]
 gi|66847542|gb|EAL87872.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           fumigatus Af293]
 gi|159130392|gb|EDP55505.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           fumigatus A1163]
          Length = 586

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 177/500 (35%), Positives = 272/500 (54%), Gaps = 21/500 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQS 58
           +A  A S  + W ++DLR+ DN+AL   Y      +  +I ++I +P+    H +S  + 
Sbjct: 87  RAIGANSAVVFWFKSDLRLYDNRALRMAYETAKGCNIPLIGLYILSPQDLTAHLLSPARV 146

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEV 117
             I  +L Q+++ LS+  I   Y +      +I + +   C Q     L+ N +YE++E+
Sbjct: 147 DLILRTLHQLKRDLSELDIPL-YMETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDEL 205

Query: 118 RRD-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------- 169
           RR+ KL+    ++ +  ++  D+ ++PPG + +   + Y VY+P+ +  +  L       
Sbjct: 206 RREAKLVRLCAKNGIKFETAHDACVVPPGQVTSQQGKQYAVYSPWYRTWVAYLNENPGCL 265

Query: 170 -VQADLRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKF 222
            V  +  S P  A +    +  S +P      +  +   Q +  ++P GE  AL  L  F
Sbjct: 266 EVSEEPGSNPGDARKYFKELFESEVPAAPEHKQLSEEEKQHLGHLYPAGEHEALRRLEAF 325

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +EK   Y E+R++ + Q TS LSPY + G+LS R      +      L     G   W+
Sbjct: 326 LEEKGRDYAEERNMVSGQTTSILSPYFASGLLSARTAIEHARRANKGSLQHGDPGLVRWI 385

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            E+ WREFYRH++  +P +CM K F P    +EW  +     AW++G TGFPI+DAAMRQ
Sbjct: 386 GEVAWREFYRHVLVHWPFICMNKCFKPEFTNLEWEYEEDRFTAWREGKTGFPIVDAAMRQ 445

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
                WMHNR RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D 
Sbjct: 446 AKQDKWMHNRTRMIVASFLSKDLLLDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDP 505

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIV 461
            PYFRIFNP +Q +RFDP G +IR W+PEL ++    IH P++       + N YP P++
Sbjct: 506 QPYFRIFNPLLQSERFDPDGEYIRKWVPELRDIQGAAIHEPYARGGGAIAAKNGYPRPML 565

Query: 462 DHKKACHHTLNQYYAAKKQS 481
           +H ++    L++Y  A +  
Sbjct: 566 NHSQSRDLALHRYKRASESG 585


>gi|255950764|ref|XP_002566149.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593166|emb|CAP99543.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 581

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 179/498 (35%), Positives = 266/498 (53%), Gaps = 21/498 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58
           ++    S  + W ++DLR+ D++ALYAA          +I +++ +PE W  H  S  + 
Sbjct: 85  RSINVGSAVVHWFKSDLRLHDSRALYAAYQFAKEHQVPLIGLYVVSPEDWTAHSTSPARV 144

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEV 117
            F   +L ++Q+ L +  I   Y +  +   +I   +   C Q     L+ N +YE++E+
Sbjct: 145 DFTLRTLKRLQQDLGELDIPL-YMETQDKRKTIPNRIVELCQQWGAKSLYANIEYEVDEL 203

Query: 118 RRD-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------- 169
           RR+ KL+     + +      D+ ++ PG++ +   + Y VYTP+ ++ +  L       
Sbjct: 204 RREAKLVRLCADNDINFTPSHDTCVVTPGALASQQGKQYSVYTPWYRSWLAFLKENPDYL 263

Query: 170 -VQADLRSLPVPAIRLTGPVTPSNIPR------FFDYPFQAIDPMFPIGEQNALHILRKF 222
            V  +  S P  A +        N+P         D   +  + ++P GE  AL  L  F
Sbjct: 264 EVSEEPGSNPGNARQQFKDFFDCNVPAAPNTHILLDEEQKRFEGLYPAGEHEALQRLDNF 323

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +EK   Y E R + + + TS LSPY + G LS R      K      + +   G  +W+
Sbjct: 324 LEEKGKEYEETRSMLSGESTSVLSPYFACGALSARTAVATAKRINKGHIDRYNPGYMTWI 383

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           +EL WR+FY+H++  +P +CM K F P    IEW  D    QAW  G TGFPI+DAAMRQ
Sbjct: 384 SELAWRDFYKHVLVNWPFICMNKCFKPEHTNIEWEYDKDQFQAWCDGKTGFPIVDAAMRQ 443

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L    WMHNR RM+ +SF  KDL++DWR GE YFM  L+DGD ASN+GGW + +STG D 
Sbjct: 444 LRHCAWMHNRTRMVVSSFFTKDLMLDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDP 503

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIV 461
            PYFRIFNP  Q +RFDP+G +I+HWLPEL +V  + IH P++         N YP PIV
Sbjct: 504 QPYFRIFNPLRQSERFDPEGEYIQHWLPELRDVSGKAIHEPYARGAAEIAQKNGYPRPIV 563

Query: 462 DHKKACHHTLNQYYAAKK 479
           DH ++    L ++  A K
Sbjct: 564 DHAESRDRALERFKKALK 581


>gi|3947746|emb|CAA08916.1| DNA photolyase [Trichoderma atroviride]
          Length = 629

 Score =  315 bits (808), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 177/483 (36%), Positives = 265/483 (54%), Gaps = 22/483 (4%)

Query: 13  WLRNDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR +DN++L    A    +   +I V+I +P+ +  H  S  +  F+  +L  ++
Sbjct: 140 WFKMDLRHSDNRSLALASAKAKEAGVPLICVYIISPQDFEAHLTSPVRVDFMLRTLSVLK 199

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128
             L+   I           D    +     +     LF N +YE++E+RR+ +++ +  +
Sbjct: 200 DDLAALDIPLHVETVDKRKDIPRRILELMEEWGSNHLFANMEYEVDELRRETRMIRQFAE 259

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQNLVQADLRSLPVP---A 181
           + +  +   D+ ++PPG + +   + Y VYTP+ +A    + +NL   ++   P     A
Sbjct: 260 NNMSFEVVHDTCVVPPGELHSGTGKQYAVYTPWYRAWMAHIHENLDLLEIYDRPEKNPGA 319

Query: 182 IRLTG--------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            R T         P  P N  +  D   +    ++P GE  A+  L KFC E V  Y ++
Sbjct: 320 TRRTFKTLFDCPIPDAPKN-KQLNDEEKKRFHGLWPCGEHEAMSRLEKFCDEAVTSYHDR 378

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYR 292
           R+IP   GTS LS +L+ G +S R C    ++      L     G   W++E+ WR+FY+
Sbjct: 379 RNIPGDNGTSCLSVHLASGTISSRTCVRTARDRNKTKRLDGGHQGIHVWISEVAWRDFYK 438

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P VCM KPF P    IEW+ +    +AW +G TGFPI+DAAMRQLN +G+MHNR
Sbjct: 439 HVLVNWPYVCMNKPFKPEYANIEWSYNMDHFEAWCEGRTGFPIVDAAMRQLNHMGYMHNR 498

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL KDLL+DWR+GE+YFM  L+DGD ASNNGGW ++AS G D  PYFR+FNP 
Sbjct: 499 CRMIVASFLSKDLLIDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRVFNPL 558

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPLPIVDHKKACHHTL 471
           +Q ++FDP G +IR W+PEL  +  + IH P++           YP  IVDHK A    L
Sbjct: 559 LQSEKFDPNGEYIRKWIPELKALSDKEIHDPYNRGAGTKAKKQGYPKQIVDHKGARERAL 618

Query: 472 NQY 474
           + Y
Sbjct: 619 SAY 621


>gi|322696650|gb|EFY88439.1| photolyase [Metarhizium acridum CQMa 102]
          Length = 587

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 183/497 (36%), Positives = 263/497 (52%), Gaps = 28/497 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQS 58
           K   A    + W + DLR  DN+AL  A   +      +I ++I +P+ +  H  S  + 
Sbjct: 87  KKVEAKDSVVHWFKTDLRCNDNRALALASEKAKEAAVPLICMYIVSPQDFEAHLTSPVRV 146

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            FI  +L  ++K L+   I              + +     Q     LF N +YE++E+R
Sbjct: 147 DFILRTLEILKKDLANLDIPLYIETVERRKQIPDKILELMEQWGSRHLFANMEYEVDELR 206

Query: 119 RDKLLEKRLQHRVICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           R+  L   L      KSF+   D+ ++PPG + + +   Y VY+P+ ++ + + + ADL 
Sbjct: 207 REANLVHDLAEN--GKSFEVVHDTCVVPPGQLRSGSGNQYAVYSPWYRSWVAH-IHADLE 263

Query: 176 SLPV--PAIRLTG--------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
            L +  P  +  G              P  PSN  +      +    ++P GE  A   L
Sbjct: 264 LLELFDPPNKNPGTARKQFKDLFECAVPEAPSN-KQLTKEEKRRFHSLWPAGESAAKERL 322

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGA 278
            KFC+EKV  Y   R+IP   GTS LS +L+ G +S R C    ++      L     G 
Sbjct: 323 EKFCEEKVGGYSNNRNIPGEDGTSSLSVHLASGTISSRTCVRTARDRNKTKRLDAGNEGI 382

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
             W++E+ WR+FY+H++  +P VCM KP+ P    I W+ +     AW +G TGFPI+DA
Sbjct: 383 RVWISEVAWRDFYKHVLVHWPYVCMNKPYKPEYSNIAWSYNEEHFNAWCEGRTGFPIVDA 442

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           AMRQLN  G+MHNR RMI ASFL KDLL+DWR GE YFM  L+DGD ASNNGGW ++AS 
Sbjct: 443 AMRQLNHNGYMHNRCRMIVASFLSKDLLIDWRKGERYFMEHLIDGDFASNNGGWGFSASV 502

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYP 457
           G D  PYFRIFNP +Q ++FDP+G +IR W+PEL ++ ++ IH P+            YP
Sbjct: 503 GVDPQPYFRIFNPLLQSEKFDPEGVYIRKWVPELQDLDSKEIHEPYGRGAGGKAKKAGYP 562

Query: 458 LPIVDHKKACHHTLNQY 474
            PIV+HK      L+ Y
Sbjct: 563 KPIVNHKDCRDRALDAY 579


>gi|327305599|ref|XP_003237491.1| deoxyribodipyrimidine photo-lyase [Trichophyton rubrum CBS 118892]
 gi|326460489|gb|EGD85942.1| deoxyribodipyrimidine photo-lyase [Trichophyton rubrum CBS 118892]
          Length = 589

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 176/489 (35%), Positives = 259/489 (52%), Gaps = 21/489 (4%)

Query: 13  WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR+ DN++L   Y+     +  +I ++I +PE    H  S  +   I  +L+ ++
Sbjct: 102 WFKQDLRLQDNRSLHRAYSFARYHNIPLICLYIFSPEDLTAHLCSPPRVDLILRTLVTLK 161

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             LS+K I                +   C       LF N +YE++E+RR+  L +    
Sbjct: 162 SELSRKDIPLYMESIERRKGIPSRIVELCKTWGANHLFANIEYEVDELRREAKLTRLCAT 221

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTG 186
           + I   + DD+ ++ PG +     + Y VY+P+ ++ +  L Q   +L  +  PA+    
Sbjct: 222 QGIRFDTEDDTCVVAPGELTTQQGKQYAVYSPWYRSWVAYLKQHPENLELVDAPAVNAGN 281

Query: 187 -------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                        P+ P+ + +  +   +    M+P GEQ A   LR+F  +K   Y  +
Sbjct: 282 ARKHFKNLFDSAVPIAPNQM-KLSEAEQERFKKMYPEGEQEAARRLREFLSKKGKQYHAK 340

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD  + Q TS LSPY S G LS R      ++   + L     G  +W++E+ WR+FY+H
Sbjct: 341 RDFMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYKH 400

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P +CM K F P    +EW  DS    AW +G TGFPI+DAAMRQL    WMHNR 
Sbjct: 401 VLTHWPYICMNKCFKPEFTDLEWEYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNRT 460

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP  
Sbjct: 461 RMIVSSFLSKDLLIDWRCGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLR 520

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472
           Q +RFDP G +IR+W+PEL +V    IH P+          N YP PIV+H ++    L 
Sbjct: 521 QSERFDPDGDYIRYWVPELRDVEGSAIHDPYGRGAGGIAEKNGYPKPIVNHTESRERALE 580

Query: 473 QYYAAKKQS 481
           +Y  A   S
Sbjct: 581 KYKKAAHGS 589


>gi|326484060|gb|EGE08070.1| deoxyribodipyrimidine photo-lyase [Trichophyton equinum CBS 127.97]
          Length = 589

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 177/489 (36%), Positives = 259/489 (52%), Gaps = 21/489 (4%)

Query: 13  WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR+ DN++L   Y+   + +  +I ++I +PE    H  S  +   I  +L  ++
Sbjct: 102 WFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRALATLK 161

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             LS+  I                +   C      +LF N +YE++E+RR+  L +    
Sbjct: 162 SELSKNDIPLYMESIERRKGVPSRIVELCKTWGANQLFANIEYEVDELRREANLVRLCAK 221

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTG 186
           + I   + DD+ ++ PG +     + Y VYTP+ ++ +  L Q   +L  +  PA+    
Sbjct: 222 QGIRFYTEDDTCVVTPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNAGD 281

Query: 187 -------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                        P  P+ + + F    +    M+P GEQ A   LR+F  +K   Y  +
Sbjct: 282 ARNHFKDLFDSAVPTAPNQM-KLFGAEQERFKKMYPEGEQEATRRLREFLSKKGKQYHAK 340

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD  + Q TS LSPY S G LS R      ++   + L     G  +W++E+ WR+FY+H
Sbjct: 341 RDSMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYKH 400

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P +CM K F P    +EW  D     AW +G TGFPI+DAAMRQL    WMHNR 
Sbjct: 401 VLTNWPYICMNKCFKPEFTDLEWEYDPTKFDAWCEGKTGFPIVDAAMRQLKHCAWMHNRT 460

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP  
Sbjct: 461 RMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLR 520

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472
           Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L 
Sbjct: 521 QSERFDPDGEYIRHWVPELRDVEGSAIHDPYGRGAEKIAEKNGYPRPIVNHTESRERALA 580

Query: 473 QYYAAKKQS 481
           +Y  A + S
Sbjct: 581 KYKKAAQGS 589


>gi|332978155|gb|EGK14890.1| deoxyribodipyrimidine photo-lyase [Psychrobacter sp. 1501(2011)]
          Length = 566

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 195/560 (34%), Positives = 283/560 (50%), Gaps = 98/560 (17%)

Query: 8   SVHLVWLRNDLRITDNKALY-------------------------------AACHNSDAK 36
           + +L+W R DLR+ DN AL                                   +++  K
Sbjct: 10  TSYLMWFRRDLRVEDNTALSQLTDLAKQALTQNDPSQLDVSQSSVSKAAQPTILNSAQPK 69

Query: 37  VIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLD 95
           + A+F+ T EQW +H +S  Q  FI+ +L  +  SL +Q  I     + ++FD  IE + 
Sbjct: 70  IHALFVVTAEQWLEHDMSIVQMDFIFRTLKVLATSLFNQLNIELHVLKTADFDSCIETVA 129

Query: 96  SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQM 154
           ++C Q  +T +  N +YE+NE++RD  +E+RL+ + I  S + D  +LPP ++  +   M
Sbjct: 130 NFCQQHSITHMASNYEYEVNEMQRDAAIEQRLKQQDIEFSRYHDQCILPPKALTTNDETM 189

Query: 155 YKVYTPFRK---------------------------------ALIQNLVQADLRSLPVPA 181
           YKV+TPF K                                 A I +L Q  LR L   A
Sbjct: 190 YKVFTPFYKKWQSILETSPPNLYSTEKVNSDKPTAERLSQILATIDDLHQQTLR-LFSKA 248

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              T  V   +  +      +  +  F  GE  A   L+ F  E V  Y   RD P+++ 
Sbjct: 249 YFETESVNQDHQAQLL----KNAEETFVAGEVAAYQQLQTFLAEDVQRYDIARDQPSLEA 304

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLL------------IKP-----KSGAFS---- 280
           TS+LS YL++G +SPR C+ + K+    +              KP     ++GA      
Sbjct: 305 TSRLSAYLTVGAISPRVCYLKAKQAAEAIYETNALNQSKKRPTKPLENSNEAGAEQDIQR 364

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           W++EL WR+FYRH++A  P +  G  F    + K+ W+ D      W QG TG P+IDAA
Sbjct: 365 WISELAWRDFYRHVIADRPDIVKGTAFNKVADTKVHWSYDEQDFNRWCQGQTGVPLIDAA 424

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR LN  G+MHNRLRM+TA FL KDL +DWR GE YFM +L+DGD ASNNGGWQW+AS G
Sbjct: 425 MRCLNQTGFMHNRLRMVTAMFLTKDLFIDWRWGERYFMQRLIDGDFASNNGGWQWSASVG 484

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLS-L 454
            D+ PYFRI NP  Q K  D +  FI+ WLPEL  V    +H       +   K +L+ +
Sbjct: 485 TDAAPYFRIMNPFSQAKTHDKEAIFIKTWLPELKAVKPSILHDEAKLRQALSAKGELANV 544

Query: 455 NYPLPIVDHKKACHHTLNQY 474
           +YP P+V+HK+A  + + Q+
Sbjct: 545 DYPQPMVEHKQARLYAIGQF 564


>gi|322707580|gb|EFY99158.1| photolyase [Metarhizium anisopliae ARSEF 23]
          Length = 587

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 178/485 (36%), Positives = 260/485 (53%), Gaps = 26/485 (5%)

Query: 13  WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR  DN+AL  A   +      +I ++I +P+ +  H  S  +  FI  +L  ++
Sbjct: 98  WFKTDLRCNDNRALALASEKAKETAVPLICMYIVSPQDFEAHLTSPVRVDFILRTLEILK 157

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L++  I              + +     Q     LF N +YE++E+RR+  +   L  
Sbjct: 158 RDLAKLDIPLYIETVERRKQIPDRVLELMEQWGSRHLFANMEYEVDELRREANMVHDLAE 217

Query: 130 RVICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLT 185
               KSF+   D+ ++PPG + + +   Y VY+P+ ++ + ++    DL  L  P  +  
Sbjct: 218 N--GKSFEVVHDTCVVPPGQLQSGSGNQYAVYSPWYRSWVAHIHADLDLLELFDPPNKNP 275

Query: 186 G--------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
           G              P  PSN         +    ++P GE  A   L KFC+E++  Y 
Sbjct: 276 GTARKRFKDLFDCAVPEAPSN-KELTKEEKRRFHSLWPAGENAAKERLDKFCEERIGGYS 334

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREF 290
           + R+IPA  GTS LS +L+ G +S R C    ++      L     G   W++E+ WR+F
Sbjct: 335 DNRNIPAEDGTSSLSVHLASGSISSRTCVRTARDRNKTKKLDGGNEGIRVWISEVAWRDF 394

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y+H++  +P VCM KP+ P    I W+ +    +AW +G TGFPI+DAAMRQLN  G+MH
Sbjct: 395 YKHVLVHWPYVCMNKPYKPEYSNIAWSYNEEHFKAWCEGRTGFPIVDAAMRQLNHNGYMH 454

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RMI ASFL KDLL+DWR GE YFM  L+DGD ASNNGGW ++AS G D  PYFRIFN
Sbjct: 455 NRCRMIVASFLSKDLLIDWRKGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPYFRIFN 514

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPLPIVDHKKACHH 469
           P +Q ++FDP+G +IR W+PEL ++  + IH P+            YP PIV+HK     
Sbjct: 515 PLLQSEKFDPEGVYIRKWVPELQDLDNKEIHDPYGRGAGAKARKAGYPKPIVNHKDCRDR 574

Query: 470 TLNQY 474
            LN Y
Sbjct: 575 ALNAY 579


>gi|30315019|gb|AAP30741.1|AF500083_1 photolyase [Fusarium oxysporum]
          Length = 630

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 179/488 (36%), Positives = 269/488 (55%), Gaps = 32/488 (6%)

Query: 13  WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR++DN+AL  A      +   +IA++I +P+ +  H  S  +  F+  +L  ++
Sbjct: 141 WFKMDLRLSDNRALALASDKAKEAGVPLIAMYIISPQDYEAHLRSPVRVDFMLRTLEVIK 200

Query: 70  KSLSQKGIVFQYHQCSNF----DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             L++  I              D  +E +D    Q     L+ N +YE++E+RR+  + +
Sbjct: 201 HDLAKLDIPLYVETVEKRKRVPDRILELMD----QWGAGHLYANMEYEVDELRREASMIR 256

Query: 126 RLQHRVICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSL---- 177
                   K+F+   D+ ++PPG +   A + Y VYTP+ ++ + ++ +  DL  L    
Sbjct: 257 DFAEN--GKAFEVVHDTCVVPPGELHTGAGKQYAVYTPWYRSWVAHIHENLDLLELYEPP 314

Query: 178 ---PVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
              P  A ++   +    IP      R      + +  ++P GE  A   L KFC+E + 
Sbjct: 315 EKNPSSARKVFAKLFDVEIPDAPKSKRLDGEEKERLRSLWPCGEHEAKKRLDKFCEEMIG 374

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIW 287
            Y ++R+IPA  GTS +S +L+ G +S R C    ++      L     G  +W++E+ W
Sbjct: 375 NYQKKRNIPAEAGTSSISVHLASGTISARTCVRTARDRNKTKKLNGGNEGIQTWISEVAW 434

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+FY+H++  +P VCM KPF P    I W+ D+    AW +G TGFPI+DAAMRQLN +G
Sbjct: 435 RDFYKHVLVHWPYVCMNKPFKPEYSNISWSYDNEHFAAWCEGRTGFPIVDAAMRQLNHLG 494

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNR RMI A FL KDLL+DWR GE YFM  L+DGD ASNNGGW ++AS G D  PYFR
Sbjct: 495 YMHNRCRMIVACFLAKDLLLDWRKGERYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFR 554

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKA 466
           IFNP +Q ++FDP G +IR W+PEL ++  + IH P++    +    N YP PIV HK  
Sbjct: 555 IFNPLLQSEKFDPDGDYIRKWVPELKDLDRKAIHDPYNRGAGSKAKKNGYPAPIVTHKDC 614

Query: 467 CHHTLNQY 474
               L  Y
Sbjct: 615 RDRALAAY 622


>gi|121703429|ref|XP_001269979.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           clavatus NRRL 1]
 gi|119398122|gb|EAW08553.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           clavatus NRRL 1]
          Length = 586

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 173/488 (35%), Positives = 264/488 (54%), Gaps = 19/488 (3%)

Query: 13  WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W ++DLR+ DN+AL   Y      +  +I ++I +P+    H  S  +      +L Q++
Sbjct: 98  WFKSDLRLHDNRALQMAYQTAKEHNIPLIGLYILSPQDLTAHLSSPARVDLTLRTLDQLK 157

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128
           + L++  I           D  + +   C +  V  +F N +YE++E+RR+ KL+    Q
Sbjct: 158 RDLNELDIPLYMETQETRKDIPQRIIDLCQEWGVNNIFANLEYEVDELRREAKLVRMCAQ 217

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPVP 180
           + +  ++  D+ ++ PG++ +   + Y VY+P+ +A + +L        +  +  S P  
Sbjct: 218 NGIKFETAHDACVVTPGAVASQQGKQYAVYSPWYRAWLVHLRENPDCLELSEEPGSNPGN 277

Query: 181 AIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           A +    +  S +P      R  D   +    ++P GE  AL  L KF +E+V  Y + R
Sbjct: 278 ARKHFAKLFESEVPAAPENKRLSDEQRKYFGQLYPAGEHEALDRLEKFVEERVKDYADAR 337

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           ++   Q TS LSPY + G LS R      ++     L +   G  SW++E+ WR+FY+H+
Sbjct: 338 NMMFGQTTSILSPYFASGSLSARTAVVHARKANKGSLDRGDPGLASWISEVAWRDFYKHV 397

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +CM K F P    +EW  D +   AW +G TGFPI+DAAMRQ+    WMHNR R
Sbjct: 398 LVHWPFICMNKCFKPEFTNLEWEYDENKFAAWCEGKTGFPIVDAAMRQMKHDAWMHNRAR 457

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP  Q
Sbjct: 458 MIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLRQ 517

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQ 473
            +RFDP G +IR WLPEL  +    +H P++         N YP PI++H K+    L +
Sbjct: 518 SERFDPDGEYIRKWLPELRGIKGSAVHEPYARGAGATAEKNGYPRPILEHSKSRAQALER 577

Query: 474 YYAAKKQS 481
           +  A +  
Sbjct: 578 FKRASENG 585


>gi|242208527|ref|XP_002470114.1| hypothetical DNA photolyase [Postia placenta Mad-698-R]
 gi|220730866|gb|EED84717.1| hypothetical DNA photolyase [Postia placenta Mad-698-R]
          Length = 543

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 185/528 (35%), Positives = 272/528 (51%), Gaps = 76/528 (14%)

Query: 13  WLR-NDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           W+R  DLR  DN+AL  A   +      +IA+F+ +P  +  H  SAR+  F   +L  +
Sbjct: 20  WMRIEDLRTRDNRALAQASEQAREDHVPLIALFVLSPHDYIAHDRSARRIDFTLRNLRCI 79

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRL 127
           + SL++  +       +   +   ++ S   +   T+L+ N +YE++E+RRD K+ E   
Sbjct: 80  RSSLAELHVPLYTTTHTPRTNIPSYVLSLLNEWNATRLYANIEYEVDELRRDIKVCELAR 139

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + +V C    D  ++PPG +L    + Y VY+PF +A   +L  +   + P+       P
Sbjct: 140 EKKVACTFVHDKCIIPPGKVLTKGEKGYTVYSPFLRAWTPHLTPSKGEADPL----ACAP 195

Query: 188 VTPSNIPRFFDYPFQA------------------------IDPMFPIGEQNALHILRKFC 223
              +N P   ++P                           I   +P GE  A  IL +F 
Sbjct: 196 SPAANSPSIHNHPVYGKLFDQSVPDEVDGFSLQDTEERDRIRTCWPAGEDAAKEILERFV 255

Query: 224 K----------------------------EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
                                         ++  Y + RD      TS+LSPYL+ GV+S
Sbjct: 256 NTMARSEQMGAVNPLSNGAKVPTKSPTKDSRIGKYKDARDKVDADTTSRLSPYLAAGVIS 315

Query: 256 PRQC------WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
            R+C       +  K   VD  +  ++G+  W+ E+ WR+FY H++A +P V MG+PF  
Sbjct: 316 ARECIRATMQLSASKAPKVD--VSRETGSGRWVQEIAWRDFYTHVVALFPRVSMGRPFQE 373

Query: 310 WTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               I+W  D+    LQAWK G TG PI+DA MRQ   +GWMHNR+RM+ A +LVKDL++
Sbjct: 374 KLSSIKWEADTAGDHLQAWKDGRTGVPIVDAGMRQALAMGWMHNRVRMVAAMYLVKDLMI 433

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE++FM  L+DGDLASNNGGWQW+ASTG D  PYFRIFNP  Q ++ DP G +IR+
Sbjct: 434 DWRLGEKHFMETLIDGDLASNNGGWQWSASTGVDPAPYFRIFNPYTQSQKADPTGDYIRY 493

Query: 428 WLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACHHTLNQY 474
           ++PEL NV    IH P   L DK    L YP P+V H +A    + +Y
Sbjct: 494 FVPELANVRGADIHNPPPALADK----LGYPRPLVKHDEARQRAIRRY 537


>gi|302035591|ref|YP_003795913.1| deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
 gi|300603655|emb|CBK39986.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
          Length = 481

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 172/476 (36%), Positives = 265/476 (55%), Gaps = 20/476 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR++DN AL AAC     +++ +F+      R H   +    F+   L ++++
Sbjct: 4   LVWFRRDLRLSDNPALSAACQECR-EIVPLFVFDEPLLRSHAFGSACVGFMLGCLEELRR 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL+  G+   +      +  ++  D +    +V  +++NR YE   + RD+ +++RL Q 
Sbjct: 63  SLALHGVSLAWRMGDPVESVLQAADDF----KVDAVYWNRDYEPAALERDREVQQRLAQQ 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV- 188
               ++F D V+     +   +   ++ Y+ +R         A    L +P+    G   
Sbjct: 119 GRTVRTFKDHVVFEAEEVRGLSGDPFQRYSAYRDRWWTKWRAAAPPLLGIPSFPPAGKAS 178

Query: 189 TPSNI--PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           TP +   P   D  ++++      GEQ A   L+ F +  V+ YV  R++PAI GTS+LS
Sbjct: 179 TPDSRKWPSVTDLGYESVPMWIEPGEQAAHARLQWFLRGPVHQYVTGRNLPAIDGTSKLS 238

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG-- 304
           P+L  G +S R   +             ++  F+W++EL+WREF++ ++A +P V  G  
Sbjct: 239 PHLRFGTVSARTLVHAALNALAKGGAVSRADVFTWVDELVWREFFQQVLAAFPHVAHGPF 298

Query: 305 --KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             KP +P        +D  L  AW QG TG+PI+DA MRQLN  GWMHNR+RM+ ASFLV
Sbjct: 299 KAKPGLPEPRPAGPERD-RLFAAWSQGLTGYPIVDAGMRQLNQTGWMHNRVRMVVASFLV 357

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL VDW+ GE YFM +L+DGDLA+NNG WQW ASTG D++  +RIFNP IQ ++FD +G
Sbjct: 358 KDLRVDWQSGERYFMERLVDGDLAANNGNWQWCASTGTDAMQGYRIFNPRIQSEKFDAEG 417

Query: 423 TFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            ++R ++PEL +VPT++IH PH             +  +YP PIVDH++A    L+
Sbjct: 418 EYLRRYVPELKHVPTKWIHEPHLMPPLEQVQAGCRIGSDYPEPIVDHRQARQEYLD 473


>gi|67516211|ref|XP_657991.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4]
 gi|40747330|gb|EAA66486.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4]
 gi|259489370|tpe|CBF89585.1| TPA: DNA photolyase (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 567

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 179/500 (35%), Positives = 269/500 (53%), Gaps = 23/500 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           A TA +  + W ++DLR+ DN+AL   Y         +I ++I +PE    H  S  +  
Sbjct: 70  AMTANAAVVHWFKSDLRLHDNRALQMAYRVAREHKIPLIGLYILSPEDLTAHLSSPARVD 129

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
               +L Q+++ L +  +       +   D    + + C +     LF N +YE++E+RR
Sbjct: 130 LTLRTLEQLKRDLGELDVPLYMETQACRKDIPRRIINLCQEWGANHLFANLEYEVDELRR 189

Query: 120 D-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------V 170
           + KL+    ++ +  ++  D  ++PPG + +   + Y VY+P+ ++ +  L        V
Sbjct: 190 EAKLIRLCAENGIRFETAHDMCVVPPGVLSSQQGRQYAVYSPWFRSWLAFLNENPEYLEV 249

Query: 171 QADLRSLPVPAIRLTG-------PVTPSNIPRFFDYP-FQAIDPMFPIGEQNALHILRKF 222
             D  S P  A R          P TP N  RF D      +   FP GE   L  L +F
Sbjct: 250 SEDPTSNPGDARRYFKELFECPVPATPEN-KRFDDVEKADRVRRAFPAGEHEGLRRLEEF 308

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
             EK   Y ++R+  + + TS+LSPY + G LS R    + +E     + + ++G  SW+
Sbjct: 309 L-EKATAYDDERNFLSGETTSKLSPYFASGSLSARTAVAKAREANAGKISRGEAGYISWI 367

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           +E+ WR+FY+H++  +P +CM K F      I+W+ ++   +AW  G TG+P++DAAMRQ
Sbjct: 368 SEVAWRDFYKHVLVHWPFICMNKCFKFEFTNIDWSYNNTHFEAWAAGKTGYPLVDAAMRQ 427

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L+   WMHNR RM+ +SFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D 
Sbjct: 428 LHATAWMHNRCRMVVSSFLCKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDP 487

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIV 461
            PYFRIFNP  Q +RFDP G FIR W+PEL  V    IHAP+     +    N YP PIV
Sbjct: 488 QPYFRIFNPIRQSERFDPDGEFIRRWVPELRGVEGNAIHAPYERGAGDIARANGYPEPIV 547

Query: 462 DHKKACHHTLNQYYAAKKQS 481
           DH +     L +Y  A + +
Sbjct: 548 DHARQRGVALRKYKDAARGA 567


>gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
           35110]
 gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
           35110]
          Length = 477

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 192/489 (39%), Positives = 265/489 (54%), Gaps = 33/489 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-QWRQHGISARQSHFIYASL 65
           M+  +VW R DLRI D+ AL  A   +D ++I +FI   +   R+   S     F+  SL
Sbjct: 1   MNRIIVWHRRDLRIFDHSALAEAAKFAD-EIIPIFILDDDILLRREDFSPACVGFMLESL 59

Query: 66  LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
             +  S +  G  ++ +  Q       +E L S   + R   +++N  YE     RD+ +
Sbjct: 60  EALALSYANIGGKLIVRRGQV------LEVLKSLVGETRAQAIYFNEDYEPFAKMRDQAV 113

Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADLRSLPV 179
           +   +   V  K+F D V   P  +L    Q Y V+TP++K   AL  N+        P 
Sbjct: 114 QSEFEKLGVRVKAFTDQVCFHPQRVLKDNGQPYTVFTPYQKKWLALSGNI------PTPQ 167

Query: 180 PAI-RLTGPVTPS-NIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           PA+ R++ P  PS  +P+  D   + ++ P+   GE   L  LR F  + +Y+Y E RD 
Sbjct: 168 PALTRISTPELPSIPLPKTSDIRKKFSVQPIVQGGEPKGLKRLRAFLSQNIYHYKELRDF 227

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA   TS LS  L  G LS R  ++             + G  ++++ELIWREFY  ++ 
Sbjct: 228 PATNATSLLSADLRFGTLSIRHVFHESMRLVPQASEPAREGIQTFISELIWREFYFQILD 287

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V     F P  E ++W  +    +AWK G TG+PI+DAAMR L   GWMHNRLRMI
Sbjct: 288 HFPHV-EKHSFKPEFENLKWENNEVFFEAWKNGQTGYPIVDAAMRALRQTGWMHNRLRMI 346

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDLL+DWR GE YFM  L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP +Q +
Sbjct: 347 VASFLTKDLLIDWRWGELYFMQHLIDGDLAANNGGWQWSASTGTDAQPYFRIFNPVLQSQ 406

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---------DLSLNYPLPIVDHKKAC 467
           +FDP+G FIR ++PEL  VP +YIH P   L K+          L  +YP PIV+HK   
Sbjct: 407 KFDPKGEFIRKYVPELQAVPVRYIHFPAEILRKSPLLAREIGVALGKDYPHPIVEHKVQR 466

Query: 468 HHTLNQYYA 476
              L  Y A
Sbjct: 467 EKALRLYKA 475


>gi|257454814|ref|ZP_05620065.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60]
 gi|257447747|gb|EEV22739.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60]
          Length = 515

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 175/475 (36%), Positives = 250/475 (52%), Gaps = 42/475 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           ++L+W R DLR  DN A  A C ++    A VIAV   TP+QW+ H  S  Q   I   +
Sbjct: 1   MNLMWFRQDLRTFDNTAFAACCEHAQQNHAGVIAVVYLTPKQWQSHRKSLWQIDLILRQI 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SLSQ  I        +F      +   C Q  ++ LF N +Y +NEV RD+ + +
Sbjct: 61  RALEQSLSQLNIGIIIRVVDDFASQATDVLELCQQLSISHLFANLEYPVNEVARDQYIAQ 120

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           + Q   ++ + FDDS ++ P  I+      YKV+TPF K  +  +    L   P PA  +
Sbjct: 121 QAQSLGIVTQWFDDSQVVAPQRIVTDKGMPYKVFTPFYKRWLAMIETGGLTLSPTPAAMV 180

Query: 185 TGPV---------------------TPSNIPRFFDYPFQAIDP-----------MFPIGE 212
              +                     T     R +  P  A+D            ++P GE
Sbjct: 181 INTIQLAKDSRNTNTNTNTNTNDYITIDAFYRAYLIPTAALDKQLNHVSELAQLLYPAGE 240

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEF- 267
             A   L  F K+ +  Y   RD+PA+      TS+LSPYL+IG+LSPR C+   +++  
Sbjct: 241 AAAQSRLDDFLKKHIADYNTARDVPALNNHLGATSRLSPYLAIGMLSPRLCYLEARQKLN 300

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI-PWTEKIEWNKDSHLLQAW 326
               +  +     W++EL WR+FY  +M   P +  GK F+ P  E + W  D    ++W
Sbjct: 301 SQQGLGSEKDIMRWISELAWRDFYYDVMVNRPDIVKGKAFLTPLDESVAWRYDLADFESW 360

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
            QG TG P++DAAMR LN+ G+MHNRLRM+ A +L K+LL+DWR GE YFM  L+DGD A
Sbjct: 361 YQGKTGVPLVDAAMRCLNSTGFMHNRLRMVVAMYLSKNLLIDWRWGEAYFMQHLVDGDFA 420

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           SNNGGWQW+AS G D+ PYFR+ NP  Q    DP  ++I+HW+PEL  VP   I+
Sbjct: 421 SNNGGWQWSASVGTDAQPYFRVMNPFSQAATHDPDASYIQHWVPELGTVPANIIN 475


>gi|326476092|gb|EGE00102.1| deoxyribodipyrimidine photo-lyase [Trichophyton tonsurans CBS
           112818]
          Length = 589

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 175/489 (35%), Positives = 257/489 (52%), Gaps = 21/489 (4%)

Query: 13  WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR+ DN++L   Y+   + +  +I ++I +PE    H  S  +   I  +L  ++
Sbjct: 102 WFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRALATLK 161

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             LS+  I                +   C      +LF N +YE++E+RR+  L +    
Sbjct: 162 SELSKNDIPLYMESIERRKGVPSRIVELCKTWGANQLFANIEYEVDELRREANLVRLCAK 221

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTG 186
           + I   + DD+ ++ PG +     + Y VYTP+ ++ +  L Q   +L  +  PA+    
Sbjct: 222 QGIRFYTEDDTCVVTPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNAGD 281

Query: 187 -------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                        P  P+ + +      +    M+P GEQ A   LR+F  +    Y  +
Sbjct: 282 ARNHFKDLFDSAVPTAPNQM-KLSGAEQERFKKMYPEGEQEATRRLREFLSKNGKQYHAK 340

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD  + Q TS LSPY S G LS R      ++   + L     G  +W++E+ WR+FY+H
Sbjct: 341 RDSMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYKH 400

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P +CM K F P    +EW  D     AW +G TGFPI+DAAMRQL    WMHNR 
Sbjct: 401 VLTNWPYICMNKCFKPEFTDLEWEYDPTKFDAWCEGKTGFPIVDAAMRQLKHCAWMHNRT 460

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP  
Sbjct: 461 RMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLR 520

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472
           Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L 
Sbjct: 521 QSERFDPDGEYIRHWVPELRDVEGSAIHDPYGRGAEKIAEKNGYPRPIVNHTESRERALA 580

Query: 473 QYYAAKKQS 481
           +Y  A + S
Sbjct: 581 KYKKAAQGS 589


>gi|16799672|ref|NP_469940.1| hypothetical protein lin0597 [Listeria innocua Clip11262]
 gi|16413037|emb|CAC95829.1| lin0597 [Listeria innocua Clip11262]
          Length = 467

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 186/482 (38%), Positives = 258/482 (53%), Gaps = 33/482 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC   D  +I +F   PEQ+    I    SH   +AS+   Q
Sbjct: 4   VMWFRRDLRVNDNKALYHACKEED--LILLFQVNPEQF----IKGSPSHQAFFASVAHFQ 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKLLEKR 126
           + L++       H    F + IE L    L++++    K+F+NR        RD+     
Sbjct: 58  QELNKNT-----HLQIMFGEPIELLKQ--LKEKIPTWDKVFFNRDETGYGASRDEAARAF 110

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
              + I   S+ DS L     +   A + YK++TP+ K   + + +  L+    P     
Sbjct: 111 FADKEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPEKIRK 170

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             + P N    F    Q + P F  GE+ A   L  F KE +  Y + RD+PA+  TS L
Sbjct: 171 ESLFP-NYEEQFRELIQDL-PAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL  G +S R  W  L++E      +   G  ++  EL WR+FY  +   +P     +
Sbjct: 229 SRYLRTGEISIRTVWQALQKE------EATEGRATFEKELCWRDFYNMIYVSFPK-QKNE 281

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P       IEW  +    + W+ G TGFP++DAAMRQL   GWMHNRLRMITASFL KDL
Sbjct: 282 PIQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 341

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFI
Sbjct: 342 LIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFI 401

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R ++ EL ++P ++IH P    +         L  +YPLPI+DHK+     + +Y  +K+
Sbjct: 402 RKYVKELRDLPDKFIHQPEKMSETEQKEHGLILGKDYPLPIIDHKERRKLAIARYEFSKE 461

Query: 480 QS 481
            S
Sbjct: 462 HS 463


>gi|330916654|ref|XP_003297506.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1]
 gi|311329779|gb|EFQ94400.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1]
          Length = 632

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 177/492 (35%), Positives = 265/492 (53%), Gaps = 38/492 (7%)

Query: 13  WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLRI DN  L  A   +  +   +I +++ +P+ W  H +S  +  F   S+  +Q
Sbjct: 140 WFKRDLRIRDNTGLSKAAELAKERGVGLIGIWLMSPQDWEAHLVSPPKCDFELRSVELLQ 199

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128
           K LS+  I           +  + L     +  V  +F N +YE +E+RR+ +L+   L+
Sbjct: 200 KELSELDIPLYIETIPERKNVTKRLVELAQEWNVKNVFCNLEYEPDELRREERLVRMMLE 259

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADL---RSLP------ 178
             +    + D  ++PPGS+   A + Y VY+P+ +A I +L    DL   R +P      
Sbjct: 260 KGIGFDPYHDDCVVPPGSLKTGAGKQYAVYSPWCRAWIAHLHAHPDLLIERPMPGRNPTN 319

Query: 179 ------------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
                       VP++     +TP    RF          ++P GE  A+  L +F  EK
Sbjct: 320 FRDKFSKLFEFSVPSLPECKALTPEEKERF--------SRLWPAGEAAAVDRLERFLVEK 371

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNEL 285
           +  Y + R+ PA+  T ++S + + G L+ R      ++      L   K G  +W+ E+
Sbjct: 372 IVKYKDTRNFPALNSTGRVSVHHAAGTLAARTSIRMARDINSAQKLDGGKDGVKTWIGEV 431

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR+FYRH++  +P VCM KPF      I W  ++    AW +G TG+PI+DAAMR LN 
Sbjct: 432 AWRDFYRHVLVNWPYVCMNKPFKYEYTNIHWEYNTAHFTAWTRGLTGYPIVDAAMRCLNH 491

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+MHNRLRMITASFL K LL+DWR+GE+YF++ L+DGD ASNNGGW ++ASTG D  PY
Sbjct: 492 TGYMHNRLRMITASFLSKHLLLDWRLGEQYFLTHLIDGDFASNNGGWGFSASTGVDPQPY 551

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVD 462
           FRIFNP IQ ++FD  G FIR W+ EL+ V  + +H P++   K       + YP P+V+
Sbjct: 552 FRIFNPWIQSEKFDADGEFIRMWVEELSGVQGKEVHNPYAAGGKAAEVARRMGYPEPVVE 611

Query: 463 HKKACHHTLNQY 474
           H+ A    L +Y
Sbjct: 612 HRVARERCLKRY 623


>gi|145605824|ref|XP_370339.2| hypothetical protein MGG_06836 [Magnaporthe oryzae 70-15]
 gi|145013607|gb|EDJ98248.1| hypothetical protein MGG_06836 [Magnaporthe oryzae 70-15]
          Length = 595

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 170/482 (35%), Positives = 249/482 (51%), Gaps = 20/482 (4%)

Query: 13  WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR+ DN AL  A   + +    +IA++  +P+ W  H  +  +  F   SL  ++
Sbjct: 106 WFKMDLRVADNTALRLASEKAKSAGVPLIALYTVSPKDWEAHLRAPVRVDFTLRSLEVLR 165

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           + L++  I        +     + + S   +   + L+ N +YE++E+RR+  L + L +
Sbjct: 166 QDLAKLDIPLHVETVDDRRAMKQRVLSLMEEWDASHLYANMEYEVDELRREANLVRLLAE 225

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           +    +   D+ ++PPG +     + Y VY+P+ +A +++L        P+         
Sbjct: 226 NGKSMEVVHDTCVVPPGKLQTGTGRQYAVYSPWYRAWLKHLSGDPELLEPMEPPHKNPAS 285

Query: 189 TPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                   FD                 Q +  M+P GE  A   L  F K ++  Y  +R
Sbjct: 286 AREKFSHLFDGKIPAAPKSKQMNEEEQQRLAAMWPAGEHEARKRLDAFIKRRIDGYAAKR 345

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + PA  GTS +S +L+ G LS R   +   K      L     G  +W++E+ WR+FY+H
Sbjct: 346 NFPADDGTSSISVHLAAGTLSARTAVHLAHKASGTRKLDGGSQGIQTWISEVAWRDFYKH 405

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P VCM KPF P    I W+ D     AW +G TGFPI+DAAMRQL   GWMHNR 
Sbjct: 406 VLVNWPYVCMNKPFKPEYSNIAWSYDMEHFAAWCEGRTGFPIVDAAMRQLRGTGWMHNRC 465

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL KD L+DWR+GE YFM  L+DGD ASNNGGW +AAS G D  PYFR+FNP +
Sbjct: 466 RMIVASFLAKDFLIDWRMGERYFMENLVDGDFASNNGGWGFAASVGVDPQPYFRVFNPLL 525

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS-WLDKNDLSLNYPLPIVDHKKACHHTLN 472
           Q ++FDP G +IR W+PEL  +  + IH P+            YP P+VDHK      L 
Sbjct: 526 QSEKFDPNGEYIRKWIPELKGIKGKAIHDPYGRGCGVEAKKKGYPKPLVDHKGCRERALK 585

Query: 473 QY 474
            Y
Sbjct: 586 AY 587


>gi|293605130|ref|ZP_06687522.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
 gi|292816533|gb|EFF75622.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
          Length = 363

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 156/339 (46%), Positives = 213/339 (62%), Gaps = 6/339 (1%)

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
           + LL PG++       Y+VYTP+ +     L  A + ++P P  +     +P  +P  FD
Sbjct: 21  ASLLRPGTVTTGKGDCYRVYTPYARTCRDRLRTAPVVAVPPPRPQTPPDWSPDPLPDTFD 80

Query: 199 ---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
               P +AI  ++P GE  A   L  F +  +  Y ++RD P++ GTS LSPYL+ GVLS
Sbjct: 81  GFARPSEAIRALWPAGEAAAGDRLEAFTEGVIDAYKDERDFPSLPGTSCLSPYLAAGVLS 140

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
           P Q            L   K+GA +W+NEL+WREFY+HL+A YPS+ M +P  P T  + 
Sbjct: 141 PGQALRAALSANHGELDSGKAGAATWINELLWREFYQHLLAAYPSLSMHQPMKPETAAVP 200

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W      L+AW+QG TG PI+DAAMRQL  +GWMHNRLRM+TA FL K+LL+DWR+GE +
Sbjct: 201 WRDAPDDLRAWQQGKTGIPIVDAAMRQLLALGWMHNRLRMVTAMFLSKNLLIDWRLGEAW 260

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           FM+ L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +RFDP+G F+R WLPEL ++
Sbjct: 261 FMAHLVDGDLAANNGGWQWSASTGADAVPYFRVFNPLSQSRRFDPRGVFLREWLPELADL 320

Query: 436 PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
             + IH P         +  YP+PIVD  ++    L  +
Sbjct: 321 DDKAIHDPSP---MERAAAGYPMPIVDLAQSRLRALEAF 356


>gi|302924301|ref|XP_003053859.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734800|gb|EEU48146.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 597

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 176/489 (35%), Positives = 272/489 (55%), Gaps = 34/489 (6%)

Query: 13  WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLRI+DNKAL  A      +   +IA+FI +P+ +  H  +  +  F+  +L  ++
Sbjct: 107 WFKMDLRISDNKALALASDKAKQAGVPLIAMFIVSPQDYEAHLRAPVRVDFMLRTLAVLK 166

Query: 70  KSLSQKGI---VFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLE 124
           + L++  I   V    +  N  D I E +D +      + ++ N +YE++E+RR+  ++ 
Sbjct: 167 EDLAKLDIPLYVETVEKRRNIPDRILELMDEWG----ASHMYANMEYEVDELRREAAMIR 222

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSL------ 177
              ++    ++  D+ ++PPG +   A + Y VYTP+ +A + ++ +  DL  L      
Sbjct: 223 DFAENGKAFEAVHDTCVVPPGKLQTGAGKQYAVYTPWYRAWVAHIHENPDLLELYDPPEK 282

Query: 178 -PVPAIRLTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEKV 227
            P  A +    +   +IP   D P          + +  ++P GE  A   L KFC+E +
Sbjct: 283 NPASARKTFKKLFDIDIP---DAPKNKQLDTEEKKRLRSLWPCGEHEAKKRLDKFCEEMI 339

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELI 286
             Y ++R+IP+  GTS LS +L+ G +S R C    ++      +   S G  +W++E+ 
Sbjct: 340 GNYHKKRNIPSDLGTSCLSVHLASGTISARTCVRTARDRNKTKKLNAGSEGIQTWISEVA 399

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR+FY+H++  +P VCM KPF P    I W+ D     AW +G TGFPI+DAAMRQ+  +
Sbjct: 400 WRDFYKHVLVNWPYVCMNKPFKPEYSNISWSYDEEQFAAWCEGRTGFPIVDAAMRQMKHL 459

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MH+R RMI A FL KDLL+DWR GE +FM  L+DGD ASNNGGW ++AS G D  PYF
Sbjct: 460 GYMHSRCRMIVACFLAKDLLIDWRKGERFFMESLIDGDFASNNGGWGFSASVGVDPQPYF 519

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKK 465
           RIFNP +Q ++FDP G +IR W+PEL +   + +H P++         N YP  IV+HK 
Sbjct: 520 RIFNPLLQSEKFDPDGDYIRKWVPELKDCNKKEVHDPYNRGAGPKAKKNGYPKAIVEHKG 579

Query: 466 ACHHTLNQY 474
                L  Y
Sbjct: 580 CRERALEAY 588


>gi|242786742|ref|XP_002480865.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218721012|gb|EED20431.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 771

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/483 (36%), Positives = 263/483 (54%), Gaps = 21/483 (4%)

Query: 13  WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR+ DN+AL  A      ++  ++ ++I +P+    H  S  +  F   +L  +Q
Sbjct: 280 WFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFTLRNLRVLQ 339

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L    I           +  E +   C Q   + LF N +YE++E+RR+  L + L  
Sbjct: 340 RELGTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRREAKLVRLLAD 399

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVP----- 180
           + I  ++  DS ++ PG++ +   + Y VY+P+ +A +  L Q    +LR L  P     
Sbjct: 400 KGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLRVLEPPGKNHE 459

Query: 181 -AIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            A    G +  S IP      R  D   Q  + M+P GEQ A   L +F   +V  Y ++
Sbjct: 460 SARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARKRLDEFITTRVKEYSKK 519

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           R +   Q T+ LSPYL+ GVLS R   ++ K+     L    +   SW++E+ WR+FY+H
Sbjct: 520 RSMVDGQYTAILSPYLASGVLSARTAVSKAKDANGGYLDGKNASLASWISEVAWRDFYKH 579

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P +CM K F P    + W  D+ L   W +G TG+PI+DAAMRQL    W+HNR 
Sbjct: 580 VLVHWPFICMNKCFKPEFTNVTWEYDTDLFTRWTEGQTGYPIVDAAMRQLRHDAWLHNRN 639

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI +SFL KDL++DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP +
Sbjct: 640 RMIVSSFLSKDLMIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLL 699

Query: 414 QGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHS-WLDKNDLSLNYPLPIVDHKKACHHTL 471
           Q ++FDP G FIR W+PEL+++  ++ IH P+            YP PIV+H  +    L
Sbjct: 700 QSEKFDPNGDFIRKWVPELSDIKDSKAIHDPYGRGAGAIAQKAGYPRPIVEHAASRVRAL 759

Query: 472 NQY 474
            +Y
Sbjct: 760 KRY 762


>gi|242786746|ref|XP_002480866.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218721013|gb|EED20432.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 593

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 176/483 (36%), Positives = 263/483 (54%), Gaps = 21/483 (4%)

Query: 13  WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR+ DN+AL  A      ++  ++ ++I +P+    H  S  +  F   +L  +Q
Sbjct: 102 WFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFTLRNLRVLQ 161

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L    I           +  E +   C Q   + LF N +YE++E+RR+  L + L  
Sbjct: 162 RELGTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRREAKLVRLLAD 221

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVP----- 180
           + I  ++  DS ++ PG++ +   + Y VY+P+ +A +  L Q    +LR L  P     
Sbjct: 222 KGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLRVLEPPGKNHE 281

Query: 181 -AIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            A    G +  S IP      R  D   Q  + M+P GEQ A   L +F   +V  Y ++
Sbjct: 282 SARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARKRLDEFITTRVKEYSKK 341

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           R +   Q T+ LSPYL+ GVLS R   ++ K+     L    +   SW++E+ WR+FY+H
Sbjct: 342 RSMVDGQYTAILSPYLASGVLSARTAVSKAKDANGGYLDGKNASLASWISEVAWRDFYKH 401

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P +CM K F P    + W  D+ L   W +G TG+PI+DAAMRQL    W+HNR 
Sbjct: 402 VLVHWPFICMNKCFKPEFTNVTWEYDTDLFTRWTEGQTGYPIVDAAMRQLRHDAWLHNRN 461

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI +SFL KDL++DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP +
Sbjct: 462 RMIVSSFLSKDLMIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLL 521

Query: 414 QGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHS-WLDKNDLSLNYPLPIVDHKKACHHTL 471
           Q ++FDP G FIR W+PEL+++  ++ IH P+            YP PIV+H  +    L
Sbjct: 522 QSEKFDPNGDFIRKWVPELSDIKDSKAIHDPYGRGAGAIAQKAGYPRPIVEHAASRVRAL 581

Query: 472 NQY 474
            +Y
Sbjct: 582 KRY 584


>gi|313624820|gb|EFR94752.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023]
          Length = 467

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 185/485 (38%), Positives = 263/485 (54%), Gaps = 39/485 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY A    D  +I +F   PEQ+    I    SH   +AS+   Q
Sbjct: 4   VMWFRRDLRVNDNKALYHAXXEED--LILLFQVNPEQF----IKGSPSHQAFFASVAHFQ 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKLLEKR 126
           + L++       H    F + IE L    L++++    K+F+NR        RD+  +  
Sbjct: 58  QELNKNT-----HLQIMFGEPIELLKQ--LKEKIPTWDKVFFNRDETGYGASRDEAAQAF 110

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRL 184
              + +   S+ DS L     +   A + YK++TP+ K   + + +  L+ +L    IR 
Sbjct: 111 FADNEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPENIR- 169

Query: 185 TGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                 S  P++ +   + I   P F  GE+ A   L  F KE +  Y + RD+PA+  T
Sbjct: 170 ----KESLFPKYEEQFRELIQDLPAFDSGEKAANTRLANFVKEDLASYDKARDVPALDKT 225

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS YL  G +S R  W  L++E      +   G  ++  EL WR+FY  +   +P   
Sbjct: 226 SHLSRYLRTGEISIRTVWQALQKE------EATEGRATFEKELCWRDFYNMIYVSFPK-Q 278

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +P       IEW  +    + W++G TGFP++DAAMRQL   GWMHNRLRMITASFL 
Sbjct: 279 KNEPIQENYRFIEWENNREFFKKWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLT 338

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G
Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDG 398

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476
           TFIR ++ EL ++P ++IH P    +         L  +YPLPI+DHK+     + +Y  
Sbjct: 399 TFIRKYVKELRDLPDKFIHQPEKMSETEQQEHGLILGKDYPLPIIDHKERRKLAIARYEF 458

Query: 477 AKKQS 481
           +K+ S
Sbjct: 459 SKEHS 463


>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
           13941]
 gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
           13941]
          Length = 487

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 183/488 (37%), Positives = 250/488 (51%), Gaps = 24/488 (4%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W R DLR+ DN AL+ A   SD +VI +FI            A +  F+ A+L  +  +L
Sbjct: 6   WFRRDLRLHDNPALHTASIRSDGRVIPLFILDDAILHAPRTGAARIAFMIAALRDLDANL 65

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
             +G      +    D     + +   +   T + +NR Y     RRD  +E  L+   +
Sbjct: 66  RARGSRLVIRRGRTLD----VIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALRDLNV 121

Query: 133 CKSF-DDSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADLRSLPVPAIR-LTGP 187
             S  +D+V+  P  +     + Y VYTP+R+   AL +      LR++  P +R     
Sbjct: 122 ETSIAEDAVVFSPDDVRTGDGRPYTVYTPYRRRWRALTEQRRAEVLRAIEPPLLRPAPEA 181

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF----CKEKVYYYVEQRDIPAIQGTS 243
           V    +P   D        + P GE +    L  F        +  Y E RD+ A   TS
Sbjct: 182 VADQTVPDHADLGIVVSQRIPPGGETHGAARLAAFVDLAAAHSIAGYAEGRDLLAEPATS 241

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHLMAFYPS 300
           +LSPYL  G ++PRQ   R     +D++        S   W+ EL WR+FY  ++  YP 
Sbjct: 242 RLSPYLRFGCVAPRQAL-RAALRLLDIVGDDHRTVRSIETWIGELAWRDFYYQILWHYPH 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   + F P  + + W  D  L  AWK+G TG+PIIDAAM QL    WMHNR RMI ASF
Sbjct: 301 VVR-RSFKPQYDALAWENDPALFDAWKEGRTGYPIIDAAMHQLRQEAWMHNRARMIVASF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDLL+DWR GE YFM QL+DGD A+NNGGWQW+A TG D+ PYFRIFNP  QG++FDP
Sbjct: 360 LTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQKFDP 419

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474
           +G ++R +LPEL  VP +YIHAP +            +  +YP PIVDH +     L  Y
Sbjct: 420 KGLYVRRYLPELAQVPDRYIHAPWTMPRAEQQRCGVVIGRDYPAPIVDHAERRMRALALY 479

Query: 475 YAAKKQSL 482
            A    +L
Sbjct: 480 RAVSSVAL 487


>gi|47169691|dbj|BAD18969.1| photolyase [Bipolaris oryzae]
          Length = 634

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 182/495 (36%), Positives = 260/495 (52%), Gaps = 38/495 (7%)

Query: 13  WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR+ DN  L  A   + +K   ++AV+I +P+ W  H +S  +  F   S+  ++
Sbjct: 142 WFKRDLRVRDNTGLSKAAELAKSKGIGLVAVWIMSPQDWEAHLVSPPKCDFELRSVQLLK 201

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128
           + L +  I           +  + L    L+  V  +F N +YE +E+RR+ +L+   L+
Sbjct: 202 QELEELDIPLYIETVHERKNIKKRLVEMALEWNVKSVFCNLEYEPDELRREERLVRMMLE 261

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLP------ 178
             +      D  ++PPGS+     + Y VYTP+ +A I  L       + RS+P      
Sbjct: 262 KGINMDPQHDDCVVPPGSLKTGTGKQYAVYTPWYRAWIAYLHAHPHLLNERSMPEKNPTG 321

Query: 179 ------------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
                       VP +     +T     RF          ++P GE  A+  L +F  EK
Sbjct: 322 FREKFTKLFDSRVPDLPDCKSLTAEEKERFHH--------LWPAGEAAAIDRLERFLTEK 373

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNEL 285
           V  Y + R+ PA+  T ++S + + G L+ R      ++   V  L   K G   W+ E+
Sbjct: 374 VIKYKDTRNFPALNSTGRISAHHAAGTLAARTSVRMARDINSVKKLDGGKEGIKGWIGEV 433

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR+FYRH++  +P VCM KPF      IEW  +    +AW QG TG+PI+DAAMR L  
Sbjct: 434 AWRDFYRHVLVHWPYVCMNKPFKYEYTNIEWEYNDAHFEAWTQGRTGYPIVDAAMRCLKH 493

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+MHNRLRMITASFL K LL+DWR+GE+YF++ L+DGD ASNNGGW ++ASTG D  PY
Sbjct: 494 TGYMHNRLRMITASFLAKHLLLDWRLGEQYFITHLIDGDFASNNGGWGFSASTGVDPQPY 553

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH---SWLDKNDLSLNYPLPIVD 462
           FRIFNP  Q ++FD QG FIR W+ EL +V    IH P+       K      YP PIV+
Sbjct: 554 FRIFNPWTQSEKFDEQGEFIRLWVKELEDVQGAAIHNPYQAKGEAAKIAKKNGYPEPIVE 613

Query: 463 HKKACHHTLNQYYAA 477
           HK A    L +Y A 
Sbjct: 614 HKFARERCLARYKAG 628


>gi|312211251|emb|CBX91336.1| hypothetical protein [Leptosphaeria maculans]
          Length = 811

 Score =  306 bits (783), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 183/506 (36%), Positives = 266/506 (52%), Gaps = 38/506 (7%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQS 58
           +  T+    + W + DLR+ DN  L   Y     ++  VI V+I +P+ W  H +S  + 
Sbjct: 308 EGGTSGDAVIHWFKRDLRLRDNTGLSKAYELAKENNIGVIGVWIMSPQDWEAHLVSPAKC 367

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F   S+  + K L++  I       S   +    +     +  V  ++ N +YE +E+R
Sbjct: 368 DFELRSVEALSKELNELDIPLHIETVSRRKEVAYRMVELAQEWNVKNVYCNLEYEPDELR 427

Query: 119 RDKLLEKRLQHRVICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           R++ L + +  + I  +FD   D  ++PPGS+     + Y VY+P+ ++ +     A L 
Sbjct: 428 REERLVRLMLQKGI--NFDPQHDDCVVPPGSLKTGGGKQYAVYSPWFRSWL-----AHLH 480

Query: 176 SLPVPAIRLTGPV-TPSNIPRFFDYPFQAIDP------------------MFPIGEQNAL 216
           + P      T P   PS     F   F +  P                  ++P GE  A+
Sbjct: 481 AHPHLLNERTMPEKNPSGFRERFAKLFDSTIPELPESKSLTEDQRKQFHHLWPAGEAAAI 540

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF--VDLLIKP 274
             LR+F  EKV  Y + R+ P +  T ++S + + G L+ R    RL  +      L   
Sbjct: 541 ERLRRFLTEKVAKYNDTRNFPNLNSTGRVSAHHAAGTLAARTSV-RLARDMNTSKKLDGG 599

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
           K G   W++E+ WR+FYRH++  +P VCM KPF      IEW  +    ++W QG TG+P
Sbjct: 600 KDGIKVWISEVAWRDFYRHVLVHWPYVCMNKPFKYEYTNIEWEYNDPHFRSWTQGKTGYP 659

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           I+DAAMR LN   +MHNRLRMITASFL K LL+DWR+GE+YF+S L+DGD ASNNGGW +
Sbjct: 660 IVDAAMRSLNQTAYMHNRLRMITASFLAKHLLLDWRLGEQYFISHLIDGDFASNNGGWGF 719

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---D 451
           +ASTG D  PYFRIFNP +Q ++FD +G FIR W+PEL  V    IH P++   K     
Sbjct: 720 SASTGVDPQPYFRIFNPWLQSEKFDAEGDFIRKWVPELQGVEGAAIHNPYAAGGKAAQIA 779

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAA 477
               YP PIV+HK A    L +Y A 
Sbjct: 780 KKNRYPEPIVEHKFARERCLARYKAG 805


>gi|189209473|ref|XP_001941069.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187977162|gb|EDU43788.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 632

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 179/492 (36%), Positives = 265/492 (53%), Gaps = 38/492 (7%)

Query: 13  WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLRI DN  L  A   +  +   VI V++ +P+ W  H +S  +  F   S+  ++
Sbjct: 140 WFKRDLRIRDNTGLSKAAELAKERGIGVIGVWLMSPQDWEAHIVSPPKCDFELRSVELLK 199

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128
           K L +  I           +  + L     +  V  +F N +YE +E+RR+ +L+   L+
Sbjct: 200 KELEELDIPLYIETIPERRNVTKRLVELAQEWNVKNVFCNLEYEPDELRREERLVRMMLE 259

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADL---RSLP------ 178
             +    + D  ++PPGS+ + A + Y VY+P+ +A I +L    DL   R +P      
Sbjct: 260 KGIGFDPYHDDCVVPPGSLKSGAGKQYAVYSPWCRAWIAHLHSHPDLLIERPMPGQNPAN 319

Query: 179 ------------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
                       VP+I  +  +TP    RF          ++P GE  A+  L +F  EK
Sbjct: 320 FRNKFSKLFDASVPSIPESKSLTPEEKERF--------SRLWPAGEAAAIDRLERFLVEK 371

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNEL 285
           +  Y + R+ PA+  T ++S + + G L+ R      ++      L   K G  +W+ E+
Sbjct: 372 IVKYKDTRNFPALNSTGRVSVHHAAGTLAARTSIRMARDINSAQKLDGGKDGVKTWIGEV 431

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR+FYRH++  +P VCM KPF      I+W  ++    AW +G TG+PI+DAAMR LN 
Sbjct: 432 AWRDFYRHVLVHWPYVCMNKPFKYEYTNIDWEYNTAHFTAWTRGQTGYPIVDAAMRCLNH 491

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+MHNRLRMITASFL K LL+DWR+GE+YF+S L+DGD ASNNGGW ++ASTG D  PY
Sbjct: 492 TGYMHNRLRMITASFLAKHLLLDWRLGEQYFLSHLIDGDFASNNGGWGFSASTGVDPQPY 551

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---NDLSLNYPLPIVD 462
           FRIFNP IQ ++FD  G FIR W+ EL +V  + +H P+    +       + YP PIV+
Sbjct: 552 FRIFNPWIQSEKFDADGEFIRTWVEELKDVQGKDVHNPYKAGGRAMETARRMGYPEPIVE 611

Query: 463 HKKACHHTLNQY 474
           H  A    L +Y
Sbjct: 612 HTVARARCLKRY 623


>gi|85115208|ref|XP_964834.1| hypothetical protein NCU08626 [Neurospora crassa OR74A]
 gi|130155|sp|P27526|PHR_NEUCR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|3054|emb|CAA41549.1| deoxyribodipyrimidine photolyase [Neurospora crassa]
 gi|28926629|gb|EAA35598.1| hypothetical protein NCU08626 [Neurospora crassa OR74A]
          Length = 642

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 179/498 (35%), Positives = 261/498 (52%), Gaps = 39/498 (7%)

Query: 13  WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR+ DN++L+ A      +   +I +++ +PE    H  +  +  F+  +L  ++
Sbjct: 140 WFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLEVLK 199

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L   GI           +    +         + LF   +YE++E+RR+  L K L  
Sbjct: 200 TDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYEVDELRREAKLVKLLAE 259

Query: 130 -----RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                ++      D+ ++ PG++ + +   Y VY+P+ +A I++ ++ +   L +     
Sbjct: 260 GEKGEKMAADVVHDTCVVMPGALQSGSGGQYAVYSPWFRAWIKH-IEENPECLEI--YEK 316

Query: 185 TGPVTPS-----------NIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
            GP  P            +IP      R  D        ++P GE  AL  L KFC E +
Sbjct: 317 PGPNPPGTKEKHENLFACSIPEAPEGKRLRDDEKARYHSLWPAGEHEALKRLEKFCDEAI 376

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELI 286
             Y E+R+IPA+QGTS LS + + G LS R      ++      L     G   W++E+ 
Sbjct: 377 GKYAERRNIPAMQGTSNLSVHFASGTLSARTAIRTARDRNNTKKLNGGNEGIQRWISEVA 436

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR+FY+H++  +P VCM KPF P    IEW+ +     AW QG TGFPIIDAAMRQ+ + 
Sbjct: 437 WRDFYKHVLVHWPYVCMNKPFKPTYSNIEWSYNVDHFHAWTQGRTGFPIIDAAMRQVLST 496

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRMI ASFL KDLLVDWR+GE YFM  L+DGD ASNNGGW +AAS G D  PYF
Sbjct: 497 GYMHNRLRMIVASFLAKDLLVDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYF 556

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPT------QYIHAPHS----WLDKNDLSLNY 456
           R+FNP +Q ++FDP G +IR W+ EL ++P         IH P+      + K      Y
Sbjct: 557 RVFNPLLQSEKFDPDGDYIRKWVEELRDLPELKGGKGGEIHDPYGRGSEKVKKKLEEKGY 616

Query: 457 PLPIVDHKKACHHTLNQY 474
           P PIV+H  A    L+ Y
Sbjct: 617 PRPIVEHSGARDRALDAY 634


>gi|323529228|ref|YP_004231380.1| DNA photolyase FAD-binding protein [Burkholderia sp. CCGE1001]
 gi|323386230|gb|ADX58320.1| DNA photolyase FAD-binding protein protein [Burkholderia sp.
           CCGE1001]
          Length = 499

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 192/502 (38%), Positives = 269/502 (53%), Gaps = 47/502 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE---------QWRQHGISA- 55
           + +  LVW R DLR TDN ALY A  + + +V  VF+             Q R  G  A 
Sbjct: 10  SFNTGLVWFRRDLRTTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDRWQTRHPGTQAQ 68

Query: 56  -RQSHFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
            R+  FI  SL ++ ++L  +G  +V  Y       D  + +     Q +V  +F N  Y
Sbjct: 69  DRRVEFILGSLRELDEALRAQGGGLVVLY------GDPADLVPKLADQLQVDAVFINHDY 122

Query: 113 EINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           E   + RD+ + +RL +      +F D V+     +L    + + V+TP++ A ++ L  
Sbjct: 123 EPAAIERDEAVRERLAETGRTFLTFKDQVIFERAELLTGQKKPFTVFTPYKNAWLKQLTS 182

Query: 172 ADLRSLPVP--AIRLTG--PVTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCK 224
            DL+  PV   A RL    P     +P        P    +   P G + A  +L  F  
Sbjct: 183 FDLKPYPVETYATRLASLPPALDRQLPTLEQLGFAPGNLAELDLPTGMRGAQRLLDDFLT 242

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLN 283
            ++  Y E+RD PA++G S LS +L  G +S R    RL  E   + ++P   GA +WL+
Sbjct: 243 -RLDSYAERRDFPAVKGPSYLSVHLRFGTVSIRTL-ARLAHE---MSLQPDGRGAATWLS 297

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAM 340
           ELIWR+FY  ++A +P +  G  F    +++ W +         AW +G TG+P+IDAAM
Sbjct: 298 ELIWRDFYFMILAHHPRLAGGASFKEEYDRLRWEQGPEADAAFAAWCEGRTGYPLIDAAM 357

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
            QLN  G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D A+NNGGWQWAASTG 
Sbjct: 358 LQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAASTGC 417

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------L 452
           D+ PYFRIFNP  Q ++FD  G FI+ +LP+L  +P ++IHAP  WL            L
Sbjct: 418 DAQPYFRIFNPITQSEKFDADGRFIKRYLPQLGKLPAKWIHAP--WLAGAQRLAEFGVAL 475

Query: 453 SLNYPLPIVDHKKACHHTLNQY 474
             NYP PIVDH +A   TL ++
Sbjct: 476 GDNYPAPIVDHAQARARTLARF 497


>gi|83770999|dbj|BAE61131.1| unnamed protein product [Aspergillus oryzae]
          Length = 624

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/493 (36%), Positives = 264/493 (53%), Gaps = 23/493 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A  VH  W ++DLR+ DN+AL   Y         +IA++I +PE    H  S  +    
Sbjct: 129 NAAVVH--WFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLT 186

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120
             +L Q++  L +  I        +  D  + +   C +     LF N +YE++E+RR+ 
Sbjct: 187 LRTLEQLKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREA 246

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQN----LVQA 172
           KL+   +++ +      D+ ++PPG + +   + Y VY+P+ ++    L+ N     V  
Sbjct: 247 KLVRLCVENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSE 306

Query: 173 DLRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
           +  S P  A ++   +  S +P      R  D   +    ++P GE   L  L  F +EK
Sbjct: 307 EPGSNPGNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEK 366

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
              Y + R+  + Q TS LSPY + G LS R    + K+   + L + + G  SW++E+ 
Sbjct: 367 ATAYDDMRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVA 426

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR+FY+H++  +P +CM K F P    +EW  +     AW +G TGFPI+DAAMRQ+ + 
Sbjct: 427 WRDFYKHVLVRWPFICMNKCFKPEFTDLEWEYNMDYFNAWCEGRTGFPIVDAAMRQMKSS 486

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
            WMHNR RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYF
Sbjct: 487 AWMHNRSRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYF 546

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHK 464
           RIF+P  Q +RFDP G +IR W+PEL  +    IH P+      DL+    YP PIVDH 
Sbjct: 547 RIFSPLRQSERFDPDGDYIRRWVPELREIEGSAIHDPYD-RGAGDLAEKNGYPRPIVDHA 605

Query: 465 KACHHTLNQYYAA 477
                 L++Y  A
Sbjct: 606 TRRALALDRYKKA 618


>gi|307726566|ref|YP_003909779.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
 gi|307587091|gb|ADN60488.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
          Length = 499

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 191/506 (37%), Positives = 273/506 (53%), Gaps = 49/506 (9%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQW--RQHGI 53
           +T      LVW R DLR TDN ALY A  + + +V  VF+          ++W  R  G 
Sbjct: 7   STDTFDTGLVWFRRDLRHTDNAALYYALKHCE-RVWCVFVFDTTILQPLIDKWQSRHPGT 65

Query: 54  SA--RQSHFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
            A  R+  FI ASL ++ ++L  +G  +V  Y       D ++ +     +  V  +F N
Sbjct: 66  QAQDRRVEFILASLHELDEALRARGGGLVVLY------GDPVDLVPKLAAELEVDAVFAN 119

Query: 110 RQYEINEVRRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
             YE   + RD+ + +RL       ++F D V+     +L    + + V+TP++ A ++ 
Sbjct: 120 HDYEPAAIERDEAVRERLSDAGRALQTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQ 179

Query: 169 LVQADLRSLPVP--AIRLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILR 220
           L   DL+  PV   A RL  P+ P        + +    P    +   P G   A  +L 
Sbjct: 180 LTSFDLKPFPVETYANRLA-PLPPRLNRQLPTLEQLGFAPGNLGELELPTGMSGAQRLLD 238

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAF 279
            F   ++  Y E+RD PA +G S LS +L  G +S R    RL  E   + ++P   GA 
Sbjct: 239 DFLS-RIDSYAERRDFPAAKGPSYLSVHLRFGTVSIRTL-ARLAHE---MSLQPDGRGAA 293

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPII 336
           +WL+EL+WR+FY  ++A +P +  G  F    +++ W +         AW +G TG+P+I
Sbjct: 294 TWLSELVWRDFYFMILAHHPRLAAGASFRADYDRLRWEQGPEAEAAFAAWCEGRTGYPLI 353

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAM QLN  G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D A+NNGGWQWAA
Sbjct: 354 DAAMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAA 413

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND----- 451
           STG D+ PYFRIFNP  Q ++FD +G FI+ +LP+L  +P ++IHAP  WL         
Sbjct: 414 STGCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPAKWIHAP--WLAGAQRLAEY 471

Query: 452 ---LSLNYPLPIVDHKKACHHTLNQY 474
              L  +YP PIVDH +A   TL ++
Sbjct: 472 GVMLGEDYPAPIVDHAQARARTLARF 497


>gi|119899747|ref|YP_934960.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
 gi|119672160|emb|CAL96074.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
          Length = 503

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 180/496 (36%), Positives = 270/496 (54%), Gaps = 42/496 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASL 65
           M+V LVW R DLR  D+ ALY A    + +V   F+   +        A R+  FI+A++
Sbjct: 24  MTVALVWFRRDLRCVDHAALYHALREHE-RVYCAFVFDTDILDALPTRADRRVEFIHAAV 82

Query: 66  LQVQKSL---------SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +++ ++L         S  G++ ++ +        E + +      V  ++ NR YE   
Sbjct: 83  VELDRALEALSREAGGSGSGLIVRHGRAQ------EAIPALAQALGVDAVYVNRDYEPAA 136

Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           + RD+ + +RL +H    + F D V+     +L  A Q + V+TP++ A ++ L    L+
Sbjct: 137 IARDRAVAERLAEHGRTLRDFKDQVIFDRDEVLTQAGQPFSVFTPYKNAWLRKLDPFYLQ 196

Query: 176 SLPVP--AIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYY 230
           + P+   A RL        +P      F+  D      P G   A  +   FC  ++  Y
Sbjct: 197 AYPIAPRARRLAPKPAGEGVPALGRIGFEPTDLRGLALPTGASGARALFGDFCG-RIEDY 255

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              RD PA++G S LS +L  G +        ++E     + +  +GA +WL+ELIWR+F
Sbjct: 256 RIARDFPAVKGVSYLSTHLRFGTIP-------VRELAAYAVHQGGAGAQTWLSELIWRDF 308

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y+ ++  +P V + + F P  ++I W+    L  AW++G TG+PI+DA MRQL   G+MH
Sbjct: 309 YQMILWHHPRV-VDQAFRPEFDRIRWDDAPALFDAWREGRTGYPIVDAGMRQLLRSGYMH 367

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NRLRMI ASFL KDL VDWR+GE +F + L D DLA+NNGGWQWAASTG D+ PYFRIFN
Sbjct: 368 NRLRMIVASFLTKDLGVDWRLGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPYFRIFN 427

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKN-------DLSLNYPLPIVD 462
           P  Q ++FDP+G FIR ++PEL  VP ++IHAP  W +D          +  +YP P+VD
Sbjct: 428 PVTQSQKFDPEGRFIRRYVPELARVPDRHIHAP--WQMDAATQSRACVQIGRDYPAPVVD 485

Query: 463 HKKACHHTLNQYYAAK 478
           H  A   TL ++   K
Sbjct: 486 HALARERTLARFAVTK 501


>gi|317148478|ref|XP_001822264.2| deoxyribodipyrimidine photo-lyase [Aspergillus oryzae RIB40]
          Length = 588

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 179/493 (36%), Positives = 264/493 (53%), Gaps = 23/493 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A  VH  W ++DLR+ DN+AL   Y         +IA++I +PE    H  S  +    
Sbjct: 93  NAAVVH--WFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLT 150

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120
             +L Q++  L +  I        +  D  + +   C +     LF N +YE++E+RR+ 
Sbjct: 151 LRTLEQLKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREA 210

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQN----LVQA 172
           KL+   +++ +      D+ ++PPG + +   + Y VY+P+ ++    L+ N     V  
Sbjct: 211 KLVRLCVENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSE 270

Query: 173 DLRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
           +  S P  A ++   +  S +P      R  D   +    ++P GE   L  L  F +EK
Sbjct: 271 EPGSNPGNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEK 330

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
              Y + R+  + Q TS LSPY + G LS R    + K+   + L + + G  SW++E+ 
Sbjct: 331 ATAYDDMRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVA 390

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR+FY+H++  +P +CM K F P    +EW  +     AW +G TGFPI+DAAMRQ+ + 
Sbjct: 391 WRDFYKHVLVRWPFICMNKCFKPEFTDLEWEYNMDYFNAWCEGRTGFPIVDAAMRQMKSS 450

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
            WMHNR RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYF
Sbjct: 451 AWMHNRSRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYF 510

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHK 464
           RIF+P  Q +RFDP G +IR W+PEL  +    IH P+      DL+    YP PIVDH 
Sbjct: 511 RIFSPLRQSERFDPDGDYIRRWVPELREIEGSAIHDPYD-RGAGDLAEKNGYPRPIVDHA 569

Query: 465 KACHHTLNQYYAA 477
                 L++Y  A
Sbjct: 570 TRRALALDRYKKA 582


>gi|295700812|ref|YP_003608705.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
 gi|295440025|gb|ADG19194.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
          Length = 499

 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 193/497 (38%), Positives = 261/497 (52%), Gaps = 47/497 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVF---------IATPEQWRQHG--ISARQSH 59
           LVW R DLR TD+ ALY A  + + +V  VF         I    Q R  G  +  R+  
Sbjct: 15  LVWFRRDLRNTDHAALYYALEHCE-RVWCVFVFDTTILQPIVDAWQTRHPGEPVKDRRID 73

Query: 60  FIYASLLQVQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           FI ASL ++  +L  +  G+V  Y       D  E +     + RV  +F N  YE   +
Sbjct: 74  FILASLAELDDALRANGGGLVVLY------GDPAELVPKLAAELRVDAVFANHDYEPVAI 127

Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD  + +RL  +     +F D  +     +LN   + + V+TP++ A ++ L   DL+ 
Sbjct: 128 ERDATVGERLAEKGRQWLTFKDQTIFERDELLNGQDKPFAVFTPYKNAWLKQLSAFDLKP 187

Query: 177 LPVPAIRLTGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            PV          P  + R           P    D   P G   A  +L  F   ++  
Sbjct: 188 YPVETYAKHLAALPPKLDRRLPTLDQLCFAPSNLTDLPLPAGMSGAQQLLDDFLT-RIDS 246

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWR 288
           Y E+RD PA +G S LS +L  G +S R    RL  E   + ++P   GA +WL+ELIWR
Sbjct: 247 YAERRDFPAAKGPSYLSVHLRFGTVSIRTL-ARLAYE---MSLQPDGKGAATWLSELIWR 302

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +FY  ++A +P +  G PF P  E + W K         AW  G TG+P++DAAM QLN 
Sbjct: 303 DFYFMVLAHHPRIAKGAPFKPEYEHLRWEKGPSADAAFAAWCDGRTGYPLVDAAMLQLNH 362

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+MHNRLRM+TASFL KDL VDWR+GE YF   L D D ++NNGGWQWAASTG D+ PY
Sbjct: 363 TGYMHNRLRMVTASFLAKDLGVDWRLGERYFADLLNDFDFSANNGGWQWAASTGCDAQPY 422

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYP 457
           FRIFNP  Q ++FDP G FI+ +LP+L  +P ++IHAP  WL   +        L  NYP
Sbjct: 423 FRIFNPVTQSEKFDPDGRFIKRYLPQLAQLPAKWIHAP--WLAGAERLAEYGVVLGGNYP 480

Query: 458 LPIVDHKKACHHTLNQY 474
            PIVDH +A   TL +Y
Sbjct: 481 EPIVDHAQARERTLIRY 497


>gi|297585056|ref|YP_003700836.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
 gi|297143513|gb|ADI00271.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
          Length = 474

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 179/480 (37%), Positives = 249/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +VW RNDLR+ D+ A+  A     + D K++ VF    + +    +  R  +F + +L  
Sbjct: 7   VVWFRNDLRLNDHPAIDEALTFAEDHDTKILCVFHIHDDLFSH--LHTRHDYF-FQTLRH 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
               L  + I  ++      +     L  Y   Q V   F ++ Y      RD+ +    
Sbjct: 64  FSDDLKSRNIAIRFLYGEVTEAFASLLKEYSGVQAV---FASKDYTSFATERDRTVRTLF 120

Query: 128 QHRVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + R I  +   S  L  P SI+      YKVYTP+ K  ++  V+  L          T 
Sbjct: 121 EERNIRFTLTVSNHLQEPSSIMKDDGTPYKVYTPYSKQWLKKPVRGLLAGHEKKLRERTC 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            V   N  +  D+   +      +GE +A   L +F  +++ +Y E RD PA+ GTS+LS
Sbjct: 181 EVA-MNRGKLDDFLASSDRTWQALGEDHAHERLEQFVTDRLTHYGESRDFPAVAGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  GVLS  Q ++        L  K    A +++ EL WR+FY  ++ ++      + 
Sbjct: 240 PYLKTGVLSVAQVYHAA----YPLFEKGDDAAVTFIKELAWRDFYT-MIHYHFENLRNQE 294

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F      + WN+D  LL+ WKQG TGFP+IDAAMRQLNT GWMHNRLRM TASFL KD  
Sbjct: 295 FQEKYRTLSWNEDDELLEYWKQGQTGFPLIDAAMRQLNTTGWMHNRLRMATASFLTKDYR 354

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YF  +L+D D ASN GGWQWAAS G D+VPYFR+FNP  Q KRFDP+GTFIR
Sbjct: 355 IDWREGERYFAEKLIDYDEASNTGGWQWAASVGTDAVPYFRVFNPVRQSKRFDPEGTFIR 414

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++PEL +VP   IH P    +         +  +YPLP VDH +A    +  +     Q
Sbjct: 415 QYVPELKDVPASSIHEPAKLSEAKQKEYRVRIGTDYPLPTVDHSEARKAAITMFEGGTNQ 474


>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
 gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
          Length = 484

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 180/493 (36%), Positives = 261/493 (52%), Gaps = 40/493 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ D+ AL+AA    D  +I V+I          +  ++ H  ++++  +  
Sbjct: 4   IVWFRRDLRLHDHAALHAAMLTGDP-IIPVYIVEDSLCLSAAVGDKRLHAHFSAIAALDD 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           +L Q G      +     +  + L     +    KLF+NR Y  +  +RD+L+ + L +H
Sbjct: 63  ALVQLGGRLLIRR----GEPQQVLCQLAQETGAEKLFFNRDYTPDARKRDELVSEVLSRH 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----------------AD 173
            V   +  D VL  PG I+      Y V+TP+R+ + Q L +                 +
Sbjct: 119 GVFVHACKDLVLHEPGEIMTKQRTPYAVFTPYRR-VWQTLPKDRPFPQPTEWILFDRLKE 177

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           L S PVP +   G     N P   ++       M   GE+ A   L++F    +Y Y E+
Sbjct: 178 LPSEPVPTVEAFG----RNRPMGTEWE------MEQFGERAARKRLQQFLDRDIYTYKEK 227

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD+P +  TS+LS  L+ G LS R  ++R++E       +  +   ++L ELIWREFY+ 
Sbjct: 228 RDMPGVNATSRLSFALNAGTLSIRTVYHRVQEVLASARGEQVTSIEAFLTELIWREFYQQ 287

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++ F+P       ++P  E++ W     L   W QG TG+PI+DAAM+QLN  GWMHNRL
Sbjct: 288 VLYFHPHTT-NHAYLPQFEEVAWENKKDLFVRWCQGETGYPIVDAAMKQLNETGWMHNRL 346

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFL KDLLVDWR G  YF  QL+D D A+N GGWQW+ASTG D+ PYFRIFNP  
Sbjct: 347 RMITASFLTKDLLVDWRWGMAYFAQQLIDFDEAANIGGWQWSASTGTDAQPYFRIFNPVT 406

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
           QG++FD  G F++ +LP L  VP QYIH P    +         +  +YPLP VDH +  
Sbjct: 407 QGEKFDRDGVFVKKYLPVLREVPLQYIHKPWDMPEHIQEQAGCKIGFDYPLPCVDHAQRR 466

Query: 468 HHTLNQYYAAKKQ 480
              +  +  AK +
Sbjct: 467 KLAMALFQEAKDR 479


>gi|169595566|ref|XP_001791207.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15]
 gi|111070898|gb|EAT92018.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15]
          Length = 632

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 175/492 (35%), Positives = 263/492 (53%), Gaps = 25/492 (5%)

Query: 13  WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLRI DN  L  A   +  K   +I V+I +P+ W  H +S  +  F   S+  ++
Sbjct: 141 WFKRDLRIRDNTGLSEAAALAKEKGIGLIGVWIMSPQDWVAHLVSPPKCDFELRSVELMK 200

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128
           K L +  I           +  + L     +  V  +F N +YE +E+RR+ +L+E  L+
Sbjct: 201 KELDELDIPLHIETVPKRRNVAKRLLELAQEWNVKNIFCNLEYEPDELRREARLVELMLE 260

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRLTG 186
           + +      D  ++PPG++     + Y VY+P+ ++ + +L      L   P+P   L G
Sbjct: 261 NGIGFNPQHDDCVVPPGALKTGGGKQYAVYSPWFRSWVAHLHAHPHLLNERPMPERNLAG 320

Query: 187 ------PVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                  +  + IP         D        ++P GE  A+  L +F  EK+  Y   R
Sbjct: 321 FREKHAGLFDAKIPDLPESKSLTDEEKTRFHALWPAGEAAAIDRLERFASEKIGRYQATR 380

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRH 293
           + PA+  T ++S + + G L+ R      +       +   S G  +W++E+ WR+FYRH
Sbjct: 381 NFPALNSTGRVSAHHAAGTLAARTSVRMARSANTSKKLDGGSDGIKTWISEVAWRDFYRH 440

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P VCM KPF      IEW  +     AWK+G TG+PI+DAAMR L    +MHNR 
Sbjct: 441 VLVHWPYVCMNKPFKFEYTNIEWEYNDAHFTAWKEGRTGYPIVDAAMRCLKHTAYMHNRN 500

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFL K LL+DWR+GE+YFM+ L+DGD ASNNGGW ++ASTG D  PYFRIFNP +
Sbjct: 501 RMITASFLAKHLLLDWRLGEQYFMTHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNPWL 560

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----NYPLPIVDHKKACHH 469
           Q ++FD +G FIR W+ EL+ V  + +H P++  DK    +     YP P+V+HK A   
Sbjct: 561 QSEKFDEEGDFIRLWVEELSGVQGKAVHNPYA--DKKAAEVARKNGYPKPVVEHKFARER 618

Query: 470 TLNQYYAAKKQS 481
            L +Y A   +S
Sbjct: 619 CLARYKAGIGRS 630


>gi|145258924|ref|XP_001402217.1| deoxyribodipyrimidine photo-lyase [Aspergillus niger CBS 513.88]
 gi|134074832|emb|CAK38946.1| unnamed protein product [Aspergillus niger]
          Length = 584

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 174/490 (35%), Positives = 264/490 (53%), Gaps = 23/490 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A  VH  W + DLR+ DN+ L   Y         ++ ++I +PE    H  SA +   +
Sbjct: 91  NAAVVH--WFKTDLRLHDNRGLQMAYQVAREHKLPLVGLYILSPEDLTAHLSSAPRVDLM 148

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120
             +L  +++ LS+  I          +D  + +   C +   T LF N +YE++E+RR+ 
Sbjct: 149 LRTLELLRRDLSELDIPLYMETQEKRNDIPQRIIDLCQEWGATHLFANLEYEVDELRREA 208

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQA 172
           KL+    ++ +  ++  D+ ++ PG +++   + Y VY+P+ +A    L        V  
Sbjct: 209 KLVRLCARNGIRFEAAHDTCVVTPGKLVSQQGKQYAVYSPWFRAWCAFLNENPEYLEVAD 268

Query: 173 DLRSLPVPAIR----LTG---PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
           +  S P  A +    L G   PV P N  R  +        ++P GE  AL  L  F +E
Sbjct: 269 EPGSNPGDARKHFKTLFGCEVPVAPEN-KRLSEEEKTRFRELYPEGEHEALRRLEAFLEE 327

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           K   Y + R+  A + TS LSPY + G LS R    + +++    L + ++G  SW++E+
Sbjct: 328 KANDYDDLRNTLAGRNTSVLSPYFASGSLSARTAVFQARKKNKGHLKRNQTGYTSWISEV 387

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR+FY+H++  +P +CM K F P    + W+ +     AW +G TG+PI+DAAMRQ+  
Sbjct: 388 AWRDFYKHVLVHWPFICMNKCFKPEFTNLAWSYNKDHFNAWCEGKTGYPIVDAAMRQIKH 447

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
             WMHNR RM+ +SFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PY
Sbjct: 448 AAWMHNRTRMVVSSFLSKDLLIDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDPQPY 507

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHK 464
           FRIFNP  Q +RFDP+G +IR W+PEL  +    +H P+     +    N YP PIVDH 
Sbjct: 508 FRIFNPLRQSERFDPEGEYIRLWVPELRAIEGAAVHDPYGRGAGDIAEKNGYPRPIVDHS 567

Query: 465 KACHHTLNQY 474
           ++    L  Y
Sbjct: 568 ESRDRALENY 577


>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
 gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
          Length = 475

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 184/483 (38%), Positives = 258/483 (53%), Gaps = 29/483 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L  A   S   V+ +F   P+   +  ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNIGLSTARQRS-PHVVGIFCLDPDILEKDDVAPARVTYLIGCLQELQQ 64

Query: 71  SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  Q G   ++ +           E L       +   +F+N   E     RD+ +   L
Sbjct: 65  NYQQAGSQLLILKGKPSQAIPILAESL-------KAQAVFWNLDVEPYAQTRDEQVSNAL 117

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQA--DLRSLPVP 180
           Q + I  + F D +L  PG IL  + + YKVYTPF +   Q L    VQA  D++ L   
Sbjct: 118 QEKGIATEKFWDQLLHAPGKILTLSKEPYKVYTPFWRNWSQELKKSPVQALEDVQGLNQQ 177

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            I L       ++P   D  +   +P M   GE  A   L++FCK  +  Y EQRD+PAI
Sbjct: 178 QISLAKEAGIIDLPTAKDLGYLWENPLMLNPGETAAKERLQEFCKTSINNYQEQRDLPAI 237

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFY 298
            GTS+LS  L  G +  R  W    E + +      +    +W  EL WREFY+H M F+
Sbjct: 238 DGTSRLSAALKFGAIGIRTVWQATLELYENSRSDEVRESIQTWQQELAWREFYQHCMYFF 297

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +  G P+     +  W+ D  L QAW +G TG+PI+DAAMRQLN  GWMHNR RMI A
Sbjct: 298 PELADG-PYRKEFREFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVA 356

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D  P  RIFNP  Q +++
Sbjct: 357 SFLTKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQKY 415

Query: 419 DPQGTFIRHWLPELNNVPTQYI---HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           DP G +IR W+PEL ++ T+Y+     P S L +      YP PIVDHKK       +Y 
Sbjct: 416 DPDGEYIRQWIPELKSLDTEYLVTGKIPTSELRQ----CGYPEPIVDHKKRQAEFKQRYK 471

Query: 476 AAK 478
             K
Sbjct: 472 EVK 474


>gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
 gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
 gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
 gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
          Length = 472

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 186/477 (38%), Positives = 272/477 (57%), Gaps = 28/477 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR++DN AL  A  ++D  +I ++I   +Q +  G + R   +++ SL  +Q 
Sbjct: 4   IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILD-DQLKMLGDAQRW--WLHHSLSSLQT 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +LS+KG      +       +E +  Y    +V K+++NR YE      D  LE RL   
Sbjct: 60  ALSKKGTSLILKKGDTKRVLLELIKKY----KVEKIYWNRSYEPPYREIDTYLENRLP-P 114

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRLT 185
           +  + +  ++L  P  I N +   YK++TPF K +  +L      + P       AI+  
Sbjct: 115 LSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRAIKSD 174

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              T + +P+  D+  Q  D   P GE+NA  +L+KF KE +  Y   RD P I  TS L
Sbjct: 175 NLETWNLLPKHPDWS-QGFDQWKP-GEKNAQIVLKKFIKENLKNYPAHRDRPDISSTSHL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           SPYL  G +S RQ W  + +  + D  ++  +  F  L +LIWREF  +L+  +P   MG
Sbjct: 233 SPYLHFGEISIRQVWTAITQATIQDKNLQKAADVF--LRQLIWREFAYYLLWHFPQ--MG 288

Query: 305 KP-FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +  F    +  +W K+ + L+AW++G TG+PI+DA MR+L   G+MHNR+RMI ASFLVK
Sbjct: 289 RSNFRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL++DWR GE++F + LLD DLA+N  GWQW A  G D+ PYFRIFNP +Q K+FDP GT
Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474
           +I+ W+PEL  VP++YIH P    D      K +L ++YP PIV+H KA    L  Y
Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKAY 465


>gi|172058000|ref|YP_001814460.1| deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum
           255-15]
 gi|171990521|gb|ACB61443.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum
           255-15]
          Length = 451

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 184/473 (38%), Positives = 250/473 (52%), Gaps = 35/473 (7%)

Query: 11  LVWLRNDLRITDNKALYAACH----NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + W+R+D R+ DN  L  A      +  A V  VF   P+   ++   ARQ +F + +L 
Sbjct: 4   ICWIRSDFRLEDNHMLARAVEYLEKDEQANVEFVFWVNPDYIGEY--DARQQYF-FQALE 60

Query: 67  QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
              K+       I F   Q  +F ++ E  D         + F +R   I + R DK  E
Sbjct: 61  HFAKNCKTHDMPIRFIEGQEKDFLEATEMADVLLFNAEYVEPFKSRDDGIMKKRGDKKTE 120

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           + L          D  LL P ++  +    YKV+TP++ A ++  V    +  PV    L
Sbjct: 121 RLL----------DRHLLHPHAVKKNDGSYYKVFTPYKNAFLKKDVD---KPYPVKLNLL 167

Query: 185 TGPVTP--SNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                    N     DY    A D  F +GE+ A   LR F K  +  Y EQRD+PA+ G
Sbjct: 168 KERYHKRRQNNAFMLDYFKRAASDTDFAVGEETARKRLRSFLKNNLSAYEEQRDLPAVDG 227

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS +S YL  G +  R  ++ +++E      +   G  ++L ELIWREFY  ++  YP  
Sbjct: 228 TSLMSRYLRTGEIGIRTIFDAVQQE------QDSKGKQTYLTELIWREFYYTILMHYPE- 280

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
               P      KIEW  D    +AW +G TG+PI+DAAMRQLNT GWMHNRLRMI ASFL
Sbjct: 281 SKRLPVNEQYTKIEWETDEKGFKAWAEGKTGYPIVDAAMRQLNTTGWMHNRLRMIVASFL 340

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDLLVDW+ GE YF  +L+D + ASN GGWQWAAS G D+VPYFR+FNPT Q K+FD  
Sbjct: 341 TKDLLVDWQKGERYFQQKLVDYEAASNIGGWQWAASVGTDAVPYFRVFNPTTQSKKFDKD 400

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           GTFIR +LPEL ++P   IH P     K+    +YP+PIV+H  A    + ++
Sbjct: 401 GTFIRTYLPELKDLPKTSIHEPTEQQRKD---YDYPMPIVEHDMARKRAIARF 450


>gi|156039880|ref|XP_001587047.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980]
 gi|154696133|gb|EDN95871.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 595

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 173/476 (36%), Positives = 256/476 (53%), Gaps = 27/476 (5%)

Query: 13  WLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR  DN AL+ A   +  K   ++A++I +P+ +  H  +  +  FI  +L  ++
Sbjct: 114 WFKCDLRTRDNTALWMASEKAKEKGVPLVAMYIISPQDFEAHLTAPVRVDFILRTLEILK 173

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + L++  +   Y +       +E      L +   + L+ N +YE++E+RR+  + +   
Sbjct: 174 RDLAELDVPL-YVETVEKRKGVEGRILELLGEWGASHLYANMEYEVDELRREARMVRDCA 232

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSL-------PV 179
            R I      D+ ++ PG + +   + Y VYTP+ KA I ++ + +DL  L       P 
Sbjct: 233 ERGIAMDVLHDTCVVRPGELRSGQGKQYSVYTPWFKAWIAHVHENSDLLDLFDAPGKNPA 292

Query: 180 PAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            A      +  + IP         D   +    M+P GE  A   L KF  EK+  Y E 
Sbjct: 293 SAREKFAKLFETKIPDAPANKSLTDEEKKRFHSMWPAGEHAAQERLSKFADEKINKYEEH 352

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ P +  TS LS + + G LS R      ++      L     G  +W++E+ WR+FY+
Sbjct: 353 RNFPNLNSTSSLSVHFASGTLSARTAIRTARDHNNTKKLNAGYQGIQTWISEVAWRDFYK 412

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P VCM KPF P    I W  ++   QAW +G TG+PI+DAAMRQL   G+MHNR
Sbjct: 413 HVLVHWPYVCMNKPFKPEYTNITWEYNNTHFQAWTEGKTGYPIVDAAMRQLKHCGYMHNR 472

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI  SFL K LL+DWR+GE +FM  L+DGD ASNNGGW + ASTG D  PYFRIFNP 
Sbjct: 473 CRMIVGSFLAKHLLIDWRMGERFFMEHLIDGDFASNNGGWGFCASTGVDPQPYFRIFNPL 532

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----NYPLPIVDHK 464
           +Q ++FD +G FIR W+PEL +V  ++IH P    DK    +     YP  IV+HK
Sbjct: 533 LQSEKFDAEGEFIRKWVPELKSVKGKFIHEPFG--DKVAAGVARKNGYPERIVEHK 586


>gi|313201853|ref|YP_004040511.1| deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
 gi|312441169|gb|ADQ85275.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
          Length = 481

 Score =  299 bits (765), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 182/499 (36%), Positives = 266/499 (53%), Gaps = 43/499 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGISARQ 57
           T  S  LVW R DLR  D+ ALY A   +   V   F+       A P++      + R+
Sbjct: 2   TTSSYALVWFRRDLRDFDHAALYHAL-KAHTHVYCAFVFDTDILDALPDR------ADRR 54

Query: 58  SHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
             FI+ S+ ++Q++L SQ G +   H C+      E + +  ++ + + ++ NR YE + 
Sbjct: 55  VEFIWESVRELQQALRSQGGDLIMLHACAK-----EGIPALAVKLKASAVYSNRDYEPDA 109

Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           V RD  +  +L  H +    + D V+     +L  A + Y V+TP++ A ++ L    L+
Sbjct: 110 VARDAEVAAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPYGVFTPYKNAHLKKLNDFYLQ 169

Query: 176 SLPVPAIRL-TGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYV 231
           + PV   R        + +P      F      +   P G      +  +F +E++  Y 
Sbjct: 170 AYPVDRYRQHLAAADKTEMPTLESMGFARTNLGEMKLPTGMSGGQQLFAEF-QERMARYK 228

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           + RD PA++G S LS +L  G +S R       ++         +GA +WLNELIWR+FY
Sbjct: 229 DARDFPAVKGPSYLSVHLRFGTVSIRHLARTAWQQH-------NAGAETWLNELIWRDFY 281

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             ++  +P V  G+ F    + I +     L  AW +G TG+P++DAAMRQLN  G+MHN
Sbjct: 282 FQVLHHHPQVAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHN 341

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRM+TASFLVKDLL+DWR GE YF  +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP
Sbjct: 342 RLRMVTASFLVKDLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNP 401

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL----NYPLPIVDH 463
             Q ++FD QG FIR ++PEL     + IHAP  W    L +  L L    +YP P+V+H
Sbjct: 402 VTQSEKFDAQGKFIRKYVPELAACHEKEIHAP--WLMPPLRQQSLGLVIGKDYPAPVVEH 459

Query: 464 KKACHHTLNQYYAAKKQSL 482
                  L  Y  A   +L
Sbjct: 460 SVQREKALALYKNASSTAL 478


>gi|213648432|ref|ZP_03378485.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 202

 Score =  299 bits (765), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 162/201 (80%)

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           WLNELIWREFYRHLM +YP++C  +PFI WT+++ W ++ H  QAW++G TG+PI+DAAM
Sbjct: 2   WLNELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAM 61

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQLN  GWMHNRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG 
Sbjct: 62  RQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT 121

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D+ PYFRIFNPT Q +RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PI
Sbjct: 122 DAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPI 181

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
           V+HK+A   TL+ Y AA+K +
Sbjct: 182 VEHKQARIATLSAYEAARKGA 202


>gi|116871975|ref|YP_848756.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740853|emb|CAK19973.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 470

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 179/485 (36%), Positives = 262/485 (54%), Gaps = 38/485 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLRI DNKALY A   +D  +I +F   PEQ+    IS   SH   ++S+   +
Sbjct: 4   VMWFRRDLRINDNKALYHASKEND--LILLFQVNPEQF----ISGSPSHQAFFSSVANFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKLLEKR 126
           K + +       H    F + IE L    L+  +    K+F+N+       +RDK     
Sbjct: 58  KEIDKNA-----HLQIMFGEPIELLKR--LKDAIPAWDKVFFNQDETGYGAKRDKAARAF 110

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            ++  +   ++ D+ L     +   + + YK++TP+ K   + + +   +S+  P   + 
Sbjct: 111 FEYNNITVHAYHDAYLHSAEEVKKTSTEYYKIFTPYYKKWREEIKETPFKSVLTPENIIK 170

Query: 186 GPVTPSNIPRFF----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             + P +  +F     D P   +D +  +GE+ A   L+ F K  +  Y + RDIP    
Sbjct: 171 KELFPHDEEQFEKLIQDLP--ELD-LKVLGEEAANTRLKNFIKRDLAEYAKARDIPDSDQ 227

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LS YL  G +S R  W  L++       KP  G   +  EL WR+FY  +   +P+ 
Sbjct: 228 TSHLSRYLRTGEISIRTVWQALQQ------TKPTEGRAIFEKELCWRDFYNMIYVSFPN- 280

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +P       IEW  +    + W++G TG+P++DAAMRQL   GWMHNRLRMITASFL
Sbjct: 281 QKNEPIQENYRFIEWENNREFFKQWQEGKTGYPLVDAAMRQLKETGWMHNRLRMITASFL 340

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDLL+DWR GE+YF   L+D D ASN  GWQWAASTG D+VPYFRIFNPT Q ++FDP 
Sbjct: 341 TKDLLIDWRYGEKYFQQMLIDYDPASNISGWQWAASTGTDAVPYFRIFNPTTQSEKFDPS 400

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           G FIR ++ EL+N+P ++IH P    +         L  +YPLPIVDHK+     +++Y 
Sbjct: 401 GKFIRKYVEELSNLPDKFIHQPEKMSESQQKEHNLILGDDYPLPIVDHKERRKLAISRYE 460

Query: 476 AAKKQ 480
            +K+Q
Sbjct: 461 FSKEQ 465


>gi|153209159|ref|ZP_01947255.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218603|ref|YP_002305390.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
 gi|120575482|gb|EAX32106.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012865|gb|ACJ20245.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
          Length = 472

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 185/477 (38%), Positives = 268/477 (56%), Gaps = 28/477 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR++DN AL  A  ++D  +I ++I   +      +   Q  ++Y SL  +Q 
Sbjct: 4   IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLVDAQRWWLYHSLSSLQT 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +LS+KG      +       +E +  Y    +V K+++NR YE      D  LE RL   
Sbjct: 60  ALSKKGTSLILKKGDTKRVLLELIKKY----KVEKIYWNRSYEPPYREIDTYLENRLPP- 114

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRLT 185
           +  + +  ++L  P  I N +   YK++TPF K +  +L      + P       AI+  
Sbjct: 115 LSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRAIKSD 174

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              T + +P+  D+  Q  D   P GE+NA  +L+KF KE +  Y   RD P I  TS L
Sbjct: 175 NLETWNLLPKHPDWS-QGFDQWKP-GEKNAQIVLKKFIKENLKNYPAHRDRPDISSTSHL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           SPYL  G +S RQ W  + +  + D  ++  +  F  L +LIWREF  +L+  +P   MG
Sbjct: 233 SPYLHFGEISIRQVWTAITQATIQDKNLQKAADVF--LRQLIWREFAYYLLWHFPQ--MG 288

Query: 305 KP-FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           K  F    +  +W K+ + L+AW++  TG+PI+DA MR+L   G+MHNR+RMI ASFLVK
Sbjct: 289 KSNFRNQFDNFKWKKNKNWLRAWQKWLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL++DWR GE++F + LLD DLA+N  GWQW A  G D+ PYFRIFNP +Q K+FDP GT
Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474
           +I+ W+PEL  VP++YIH P    D      K +L ++YP PIV+H KA    L  Y
Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKAY 465


>gi|331222855|ref|XP_003324101.1| photolyase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309303091|gb|EFP79682.1| photolyase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 606

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 194/536 (36%), Positives = 280/536 (52%), Gaps = 75/536 (13%)

Query: 6   AMSVHLVWLR-NDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           A  V + W+R  DLR++DN+AL  A     +    ++ + + +P  +R H  S R+  F+
Sbjct: 72  AEGVVVWWMRMRDLRLSDNRALAVASQLAKDQAKHLVVLHVLSPGDYRSHDRSPRRIDFV 131

Query: 62  YASLLQVQKSLSQKGI------VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
             +L  +Q  L +  I      V   HQ    +  I+ + S+      + L  N ++E++
Sbjct: 132 LRNLSDLQARLHKLNIPLWTITVEPRHQIP--EKIIQLVSSWG----ASYLTANIEHEVD 185

Query: 116 EVRRD-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           E+RRD ++L    +  +      D+ L+ PG +L    + Y V+ P+++    NL+ ++L
Sbjct: 186 ELRRDIQVLNLAREKNIGVDFLHDTCLVEPGKVLTKENKPYSVFGPWQRNWA-NLINSNL 244

Query: 175 RSLPVPAIRLTGPVTPSN-----IPRFFDYPFQAIDPMFPI--------------GEQNA 215
               + A     P  PS      + + F+ P  A  P F +              GEQ A
Sbjct: 245 DEY-IAAAEDCHPNDPSIKDVEILNQLFECPVPASLPGFELSAEDSKIMHENWKAGEQAA 303

Query: 216 LHILRKF------------------------CKEKVYYYVEQ----RDIPAIQGTSQLSP 247
             +L +F                           +    VEQ    R+ P + GTS+LS 
Sbjct: 304 EELLNQFLNSPLKSQSTRQTTLTKDGKTSGATTRRAETIVEQYSSLRNRPDLPGTSRLSA 363

Query: 248 YLSIGVLSPRQCWN---RLKEEF---VDLLIKPKS--GAFSWLNELIWREFYRHLMAFYP 299
           YL+ GV+SPR C     R+ E+    VD L   +   G   W +EL WR+FY+H++A +P
Sbjct: 364 YLAAGVISPRACIRASFRISEKGKKPVDGLQVDRRDLGVGVWQSELGWRDFYQHVLAAWP 423

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            VCM KPF    E + W +D  LL+ WKQG TG+P IDA MRQL  IG+MHNR RM  A 
Sbjct: 424 RVCMRKPFNLKYESLVWEEDEGLLEKWKQGLTGYPFIDACMRQLKHIGYMHNRGRMCVAM 483

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDL++DW++GE++FM  L+DGDL SNNGGWQW+ASTG D+ PYFRIF P  Q ++ D
Sbjct: 484 FLTKDLMMDWKLGEKWFMENLVDGDLGSNNGGWQWSASTGTDAQPYFRIFAPLSQSEKSD 543

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQY 474
           P G FIRHW+PEL ++  + IHAP   L  +    LNYP PIVDH  A    L +Y
Sbjct: 544 PNGDFIRHWVPELKSITGKNIHAPFDSLPPDKFKKLNYPKPIVDHSVARKRALARY 599


>gi|237654350|ref|YP_002890664.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
 gi|237625597|gb|ACR02287.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
          Length = 484

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 182/499 (36%), Positives = 260/499 (52%), Gaps = 42/499 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAA------CHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MS  LVW R DLR  D+ AL+ A       H +     A+  A P +      + R+  F
Sbjct: 1   MSSALVWFRRDLRSFDHAALHHALRFAERVHCAFVFDTAILDALPAR------ADRRVEF 54

Query: 61  IYASLLQVQKSLSQKGIVFQYH------QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           I+ASL ++  +L                +    +D I  L     +  V K+F NR YE 
Sbjct: 55  IHASLAELDAALDAMARAAGGTGGGLIVRHGRAEDEIPRL---AAELGVDKVFANRDYEP 111

Query: 115 NEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
           + + RD  + +RL    I  + F D V+     +L    + Y V+TP++ A ++ +  + 
Sbjct: 112 DAILRDSRVAQRLAEDGIGYEDFKDQVVFERDEVLTQTGKPYSVFTPYKNAWLKAVDDSQ 171

Query: 174 LRSLPVP--AIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVY 228
           + S  V   A  L        +P   D  F   +      P+G      +   F   ++ 
Sbjct: 172 VSSHAVEKYAAHLAPKPAGETLPGLADIGFAPTNLAELNMPVGMSGGKRLFDDFAA-RIE 230

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y   RD PA++G S LS +L  G +S RQ     +        +   GA +WL+ELIWR
Sbjct: 231 RYKRARDFPAVKGVSYLSTHLRFGTVSIRQLAAHAR-------ARGGEGAETWLSELIWR 283

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +FY  ++  +P V + + F P  + ++W+    L  AW +  TG+PI+DAAMRQL+  GW
Sbjct: 284 DFYHQILWHHPQV-VDRAFRPEYDAVQWDDAPELFAAWCEARTGYPIVDAAMRQLDQTGW 342

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRMI ASFL KDL VDWR+GE YF  +L D DLA+NNGGWQWAASTG D+ P+FRI
Sbjct: 343 MHNRLRMIVASFLTKDLGVDWRLGERYFAIRLNDYDLAANNGGWQWAASTGCDAQPWFRI 402

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLD----KNDLSLNYPLPIVD 462
           FNP  Q ++FDP+G FIR +LPEL  VP ++IHAP     +D    +  + ++YP PIVD
Sbjct: 403 FNPVTQSEKFDPEGRFIRRYLPELARVPDKFIHAPWTMGGIDQTACRTKIGVDYPGPIVD 462

Query: 463 HKKACHHTLNQYYAAKKQS 481
           H  A   TL ++   K  +
Sbjct: 463 HAAARERTLQRFGVVKNDA 481


>gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
          Length = 482

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 179/491 (36%), Positives = 265/491 (53%), Gaps = 28/491 (5%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    ++W R DLR+ DNKAL AA H S   +I+++I  PE      + A Q+ +++
Sbjct: 2   AKDAAKPVILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQAWWLH 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL ++             +++E L S   Q     +F+NR+Y+   +  D  
Sbjct: 61  HSLEALDGSLRKRRGGLSLASG----EALEVLRSLIKQSDADAVFWNRRYDPPGISIDAR 116

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP- 180
           +E  L+ R I  KSF   +L  P  ++  +   Y+VYTPF +AL ++ ++A+   +P   
Sbjct: 117 IEHELEKRAIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRAL-ESSIEAEPLDIPSKL 175

Query: 181 --AIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             A +L G     +       P  A +   +   GE+ A   LR F ++++  Y E RD 
Sbjct: 176 QLASKLPGSEKLESWKLLSTQPDWASNFADLCTPGEEGAQEKLRTFIEDRLDGYKENRDY 235

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA   TS LSP+L++G +SP + W+  +     +   P +    +  E+ WREF  HL+A
Sbjct: 236 PAKPATSMLSPHLALGEISPARIWDATRGLSKHV---PAADIVHFRKEIAWREFSYHLLA 292

Query: 297 FYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P +        W ++    EW +     +AW +G TG+PI+DA MRQL   GWMHNR+
Sbjct: 293 HFPRLATAN----WDDRFDGFEWRRAEKDFKAWSRGMTGYPIVDAGMRQLWRYGWMHNRV 348

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL+KDL+VDWR GE +F   L+D D A+N   WQW A +G D+ P+FRIFNP +
Sbjct: 349 RMIAASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVL 408

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKAC 467
           QG++FDP G F+R  +PEL  +  +YIH    AP S LD  D+ L   YP P+VDH  A 
Sbjct: 409 QGEKFDPDGDFVRAHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGAR 468

Query: 468 HHTLNQYYAAK 478
              L  Y A +
Sbjct: 469 KRALAAYNAIR 479


>gi|254497872|ref|ZP_05110637.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
 gi|254352870|gb|EET11640.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
          Length = 477

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 177/488 (36%), Positives = 266/488 (54%), Gaps = 35/488 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR  DN+AL  AC N    +I ++I +     Q  + A Q  +++ SLL
Sbjct: 1   MSTAIVWFRQDLRCNDNQALAEAC-NHHQYIIPLYIYS-----QESLGAAQHWWLHHSLL 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L ++G+      C     ++  +       ++  +++NR YE   ++RDK ++  
Sbjct: 55  ALQKELKKQGLDL----CLKQGQALSIIHELIKNHKIEAVYWNRCYEPKSIQRDKQIKDE 110

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ + +   SF+ S+L  P ++ N     +KV+TP+ K  I+   Q+ + S     I   
Sbjct: 111 LRLKGLQVYSFNGSLLNEPWTVKNKNGDYFKVFTPYWKQCIRQTTQSRVSS-----INQR 165

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRDIP 237
            P   S   +  D+      P + I        GE  A++ L  F +  +  Y E R+ P
Sbjct: 166 PPPLTSTSEQLSDWRLLPQKPNWAIEFPNYWEPGEHGAMNKLNFFIEHHLQDYQEARNHP 225

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWREFYRHL 294
           +   TS+L+P+L  G +SP Q WN ++E      ++PK     A  +L EL WREF  +L
Sbjct: 226 SKTATSRLAPHLHFGEISPWQVWNAIEEA----KLQPKCDLRSADHFLAELGWREFSYYL 281

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +   K F    +   W +D   L+ W+ G TGFPI+DA MR+L   G+MHNR+R
Sbjct: 282 LYHFPELP-NKNFRQEFDAFPWQQDETHLKCWQTGMTGFPIVDAGMRELWHTGYMHNRVR 340

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL+KDL++DWR G  +F + LLD DLA+N+  WQW A TG DS PYFRIFNPT+Q
Sbjct: 341 MIVASFLIKDLMIDWRAGAAWFYNTLLDADLANNSASWQWVAGTGADSAPYFRIFNPTLQ 400

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACHHTL 471
            ++FDPQG +I+ W+PEL+ VP Q+IH P     +     L  +YP P+VDH       L
Sbjct: 401 SEKFDPQGEYIKMWIPELSQVPRQWIHKPWEAPPQTLAITLGKDYPYPLVDHALVRKIAL 460

Query: 472 NQYYAAKK 479
             Y + +K
Sbjct: 461 QHYQSLRK 468


>gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9]
 gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9]
          Length = 469

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 182/476 (38%), Positives = 251/476 (52%), Gaps = 29/476 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L WLR DLR+ D+ AL +A   S  +V+ VF+           S R+  FI+ SL ++Q 
Sbjct: 7   LCWLRRDLRLDDHAALSSALQQSR-EVVCVFVFDRAILDSLPASDRRVDFIHRSLCELQA 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L Q G          +  + E L +   +     +F  +  E   V RD  +  +L Q 
Sbjct: 66  RLQQHGSTL----VCRYGWADEALPALAAELGAQVVFAAQDDEPASVTRDARVAGQLEQA 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PAIRLTGPV 188
             I     D  L     +L      + V+TP+ +A +  L  AD+   PV P +    P+
Sbjct: 122 GCILHLVKDHTLRARDELLTRTGTPFTVFTPYARAWLARLAPADMAEWPVAPYLDRLCPL 181

Query: 189 TPSNIPR-----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               +P      F D    A+   +  G   A   L +F   ++  Y E+RD PA+  TS
Sbjct: 182 PAQPLPSLASMGFTDTGLAALG--WQAGSTGAQAALAQFLP-RLPLYHEERDFPALDATS 238

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L  G LS RQ   RL  +          GA +WLNEL+WR+FY  ++   P +  
Sbjct: 239 RLSPHLRFGTLSVRQL-VRLATD------AGHEGAQAWLNELVWRDFYHQVLWHRPQLAQ 291

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G  F P  ++++W  ++    AW +G TG+P++DAAMRQL   GWMHNRLRMI ASFL K
Sbjct: 292 GHAFKPVYDQLDWPGEADHFAAWTEGRTGYPLVDAAMRQLRQTGWMHNRLRMICASFLAK 351

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR+GE +F   LLD D A+NNGGWQWAASTG D+ PYFRIFNP  Q ++FDP G 
Sbjct: 352 DLLLDWRLGEAWFAECLLDFDFAANNGGWQWAASTGCDAQPYFRIFNPVSQSRKFDPDGH 411

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN-----DLSLNYPLPIVDHKKACHHTLNQY 474
           FIRH++PEL  +  + IHAP  WL +          +YPLP+VDH +     L  Y
Sbjct: 412 FIRHFVPELARLDAEAIHAP--WLARRLPPGFSPGHDYPLPLVDHARQRERALALY 465


>gi|313610351|gb|EFR85579.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes FSL
           F2-208]
          Length = 467

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 176/485 (36%), Positives = 250/485 (51%), Gaps = 39/485 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC   D  ++ +F   P Q+    I+   SH   + S+   +
Sbjct: 4   VMWFRRDLRVNDNKALYNACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFTSVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +       H    F + IE     C QQ         K+++NR        RD+  
Sbjct: 58  QEIDKTA-----HLQIMFGEPIE-----CFQQLKDTLPSWDKVYFNRDETGYGAERDEAA 107

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +    + ++  +SF DS L     +     + YK++TP+ K   + + +   +    P  
Sbjct: 108 QAFFDEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPEN 167

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                + P    +F +       P+   GE+ A   L  F K  +  Y + RD P +  T
Sbjct: 168 IRKESLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKT 225

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   +P+  
Sbjct: 226 SHLSRYLRTGEISIRTIWQALQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ- 278

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +P       IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL 
Sbjct: 279 KNEPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFLT 338

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G
Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTG 398

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476
            FIR ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  
Sbjct: 399 EFIRKYVKELANLPDKYIHQPEKMTETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEF 458

Query: 477 AKKQS 481
           +K+ S
Sbjct: 459 SKEHS 463


>gi|253999882|ref|YP_003051945.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. SIP3-4]
 gi|253986561|gb|ACT51418.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. SIP3-4]
          Length = 481

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 181/491 (36%), Positives = 263/491 (53%), Gaps = 43/491 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGISARQ 57
           T  S  LVW R DLR  D+ ALY A   +   V   F+       A P++      + R+
Sbjct: 2   TTSSYALVWFRRDLRDFDHAALYHAL-KAHTHVYCAFVFDTDILDALPDR------ADRR 54

Query: 58  SHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
             FI+ S+ ++Q++L SQ G +   H C+      E + +  ++ +   ++ NR YE + 
Sbjct: 55  VEFIWESVRELQQALRSQGGDLIVLHACAK-----EAIPALAVKLKANAVYSNRDYEPDA 109

Query: 117 VRRD-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           V RD K+  K   H +    + D V+     +L  A + Y V+TP++ A ++ L    L+
Sbjct: 110 VARDAKVAAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPYGVFTPYKNAHLKKLNDFYLQ 169

Query: 176 SLPVPAIRL-TGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYV 231
           + PV   R        + +P      F      +   P G      +  +F +E++  Y 
Sbjct: 170 AYPVDRYRQHLAASDKTEMPTLESMGFARTNLAEMKLPTGMSGGQQLFAEF-QERMARYK 228

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           + RD PA++G S LS +L  G +S R       ++         +GA +WLNELIWR+FY
Sbjct: 229 DARDFPAVKGPSYLSVHLRFGTVSIRHLARTAWQQH-------NAGAETWLNELIWRDFY 281

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             ++  +P V  G+ F    + I +     L  AW +G TG+P++DAAMRQLN  G+MHN
Sbjct: 282 FQVLHHHPQVAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHN 341

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRM+TASFLVKDLL+DWR GE YF  +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP
Sbjct: 342 RLRMVTASFLVKDLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNP 401

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL----NYPLPIVDH 463
             Q ++FD QG FIR ++PEL     + IHAP  W    L +  L L    +YP P+V+H
Sbjct: 402 VTQSEKFDAQGKFIRKYVPELAACHEKEIHAP--WLMPPLRQQSLGLVIGKDYPAPVVEH 459

Query: 464 KKACHHTLNQY 474
                  L+ Y
Sbjct: 460 SVQREKALSLY 470


>gi|315281208|ref|ZP_07869885.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120]
 gi|313615150|gb|EFR88618.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120]
          Length = 467

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 186/491 (37%), Positives = 258/491 (52%), Gaps = 55/491 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR++DNKALY A    D  +I +F   P Q+    I+   SH   +AS+   Q
Sbjct: 4   VMWFRRDLRVSDNKALYHASKEDD--LILLFQVNPAQF----ITGSPSHQAFFASVAHFQ 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV------TKLFYNRQYEINEVRRDKLL 123
           + L++   +        F D +E     CLQQ         K+F+NR        RD   
Sbjct: 58  QELAKTARL-----QIMFGDPME-----CLQQLKEAVPTWNKVFFNRDETGYGASRDAAA 107

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++    R I   +F DS L     +     + YK++TP+ K       + +++ +P    
Sbjct: 108 QQFFDERQIEVHAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEMKEMP---- 158

Query: 183 RLTGPVTPSNIPRFFDYP-----FQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQR 234
            L   + P NI +   +P     F  I    P+   GEQ A   L  F KE +  Y + R
Sbjct: 159 -LKVTLKPENIRKESLFPKYEEQFAEIVHDLPVSDAGEQAANARLASFIKEDLTDYDKAR 217

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P +  TS LS YL  G +S R  W  L++       +   G  ++  EL WR+FY  +
Sbjct: 218 DFPELDKTSHLSRYLRTGEISIRTIWQALQQ------TEATEGRATFEKELCWRDFYNMI 271

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +P       IEW       + W++G TGFP++DAAMRQL   GWMHNRLR
Sbjct: 272 YVSFPD-QKNEPIQENYRYIEWENSRAFFKCWQEGQTGFPLVDAAMRQLKETGWMHNRLR 330

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MITASFL KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q
Sbjct: 331 MITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQ 390

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK--NDLSL----NYPLPIVDHKKACH 468
            ++FDP G FIR ++ EL ++P ++IH P    +K  N+  L    +YPLPIVDHK+   
Sbjct: 391 SEKFDPAGKFIRKYVKELAHIPDKFIHQPEKMSEKEQNEYGLLVGKDYPLPIVDHKERRK 450

Query: 469 HTLNQYYAAKK 479
             + +Y  +K+
Sbjct: 451 LAIARYEFSKE 461


>gi|254991721|ref|ZP_05273911.1| DNA photolyase [Listeria monocytogenes FSL J2-064]
          Length = 467

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 179/490 (36%), Positives = 253/490 (51%), Gaps = 49/490 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC   D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +       H    F + IE     C QQ         K+++NR        RD+  
Sbjct: 58  QEIDKTA-----HLQIMFGEPIE-----CFQQLKDTLPSWDKVYFNRDETGYGAERDEAA 107

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +    + ++  ++F DS L     +     + YK++TP+ K       + +++  P    
Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162

Query: 183 RLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                +   ++  F  Y  Q  +     P+  IGE+ A   L  F K  V  Y + RD P
Sbjct: 163 LKHENIRKESL--FLKYEEQFAEMTSDLPILDIGERAANTRLANFIKHDVADYDKARDFP 220

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  TS LS YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   
Sbjct: 221 ELDKTSHLSRYLRTGEISIRTIWQSLQE------TEATEGRATFEKELCWRDFYNMIYVS 274

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P+    +P       IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMIT
Sbjct: 275 FPN-QKNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMIT 333

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG DSVPYFRIFNPT Q ++
Sbjct: 334 ASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDSVPYFRIFNPTTQSQK 393

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471
           FD  G FIR ++ EL N+P +YIH P    +         L  +YP PIVDHK+     +
Sbjct: 394 FDSTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAI 453

Query: 472 NQYYAAKKQS 481
            +Y  +K+ S
Sbjct: 454 ARYEFSKEHS 463


>gi|217965318|ref|YP_002350996.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
 gi|217334588|gb|ACK40382.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
 gi|307570126|emb|CAR83305.1| phr [Listeria monocytogenes L99]
          Length = 467

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 175/485 (36%), Positives = 251/485 (51%), Gaps = 39/485 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC   D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +       H    F + IE     C QQ         K+++NR       +RD+  
Sbjct: 58  QEIDKTA-----HVQIMFGEPIE-----CFQQLKDTLPSWDKVYFNRDETGYGAKRDEAA 107

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +    + ++  +SF DS L     +     + YK++TP+ K   + + +   +    P  
Sbjct: 108 QAFFDEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPEN 167

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                + P    +F +       P+   GE+ A   L  F K  +  Y + RD P +  T
Sbjct: 168 IRKESLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKT 225

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS YL  G +S R  W  L+E       K   G  ++  EL WR+FY  +   +P+  
Sbjct: 226 SHLSRYLRTGEISIRTVWQALQE------TKATEGRATFEKELCWRDFYNMIYVSFPNQ- 278

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +P       IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL 
Sbjct: 279 KNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLT 338

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP  
Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTA 398

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476
            FIR ++ EL N+P +YIH P    +         L  +YP P++DHK+     + +Y  
Sbjct: 399 KFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLVLGKDYPFPLIDHKERRKLAIARYEF 458

Query: 477 AKKQS 481
           +K+ S
Sbjct: 459 SKEHS 463


>gi|145588429|ref|YP_001155026.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046835|gb|ABP33462.1| deoxyribodipyrimidine photo-lyase type I [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 492

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 187/498 (37%), Positives = 262/498 (52%), Gaps = 35/498 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---------QHGISARQ 57
           M   LVWLR DLR+ DN AL+ A   S  +V   FI   E  +         Q     R+
Sbjct: 1   MQKGLVWLRRDLRLYDNAALHYALKES-KQVWVTFIFDEEILKPLLKGELDAQRLKHDRR 59

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI+  L Q+ + L ++G          F   +E +        V  +F N  YE + +
Sbjct: 60  VDFIWQGLEQIDEELRKQGGGL----IVRFGKPVECIPQIAKDLGVDTVFTNHDYEPSAI 115

Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ ++  L    I  +SF D V+     IL ++  ++ ++TP++   ++ L + DL +
Sbjct: 116 ARDEAVKTLLAKSDIQFESFKDQVIFEKKEILTNSNTVFSIFTPYKNNWLKTLQEKDLVA 175

Query: 177 LPVPAIRLTGPVTPS----NIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYY 230
               A        P      IP      F    I+   P G +     L  F   ++  Y
Sbjct: 176 YECSAKPGQFAAIPKKLAQEIPTLESMGFCKTGIEAYLPPGAEGGQAFLEDFLP-RIDQY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              RD PAI+G S LS +L  G+LS R     L  E    ++    GA  WL+ELIWR+F
Sbjct: 235 QVGRDFPAIKGVSYLSTHLRFGMLSIRG----LVREAHRRMLAGSMGATIWLSELIWRDF 290

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           Y  ++A +P +  G  F P  + I W + S    L  AW +G TG+P++DAAM QLN  G
Sbjct: 291 YFMILANHPRLAKGASFKPDYDNIVWEQGSVAKKLFAAWCEGKTGYPLVDAAMHQLNQSG 350

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+ ASFL KDL VDWR GE YF   L D +L+SNNGGWQWA+S+G D+ PYFR
Sbjct: 351 YMHNRLRMVVASFLTKDLGVDWRWGEAYFAEHLNDFELSSNNGGWQWASSSGCDAQPYFR 410

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSL--NYPLPIV 461
           IFNP  Q ++FDP+G FIR +LP+LN++  + IHAP    H  L+   ++L  +YPLP+V
Sbjct: 411 IFNPITQSEKFDPEGKFIRRYLPQLNHLSKKSIHAPWKAGHIELEAAGITLGRDYPLPVV 470

Query: 462 DHKKACHHTLNQYYAAKK 479
           DH +A   TL +Y   KK
Sbjct: 471 DHDEARKKTLVRYSVVKK 488


>gi|153007684|ref|YP_001368899.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
           49188]
 gi|151559572|gb|ABS13070.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
           49188]
          Length = 484

 Score =  295 bits (756), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 178/467 (38%), Positives = 256/467 (54%), Gaps = 35/467 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQVQ 69
           LVWLRNDLRI DN AL AA   +   + AV++  T  + R  G + R   ++  SL  ++
Sbjct: 22  LVWLRNDLRINDNPALDAAA-ETGGHITAVYVHETVAEIRAPGCAVRW--WLDQSLEAIR 78

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K L+ +GI           D  + L     +  VT+LF+NR+Y   E   D  L+ +L+ 
Sbjct: 79  KQLADRGIELLIETG----DPRDILPQLIAKLAVTELFWNRRYAPAEREFDANLKAQLKE 134

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                 SF  ++LL P  +   +   Y+V+TPF KAL  +        +P P  R    +
Sbjct: 135 SGTGVTSFPGNLLLEPWELKTASDTPYQVFTPFAKALRHH-------HIPRPLSRRQWDI 187

Query: 189 TPS-------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            P+       N+P +     +  D ++ IGE  A   L +F +  +  Y E RD+P I G
Sbjct: 188 KPTQETCYSPNVPAWA----KKFDGLWNIGEDAARDCLTRFLENTLSTYTEDRDVPGIDG 243

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G +S RQ W      F+D     ++G   +L+ELIWR+F  H + ++   
Sbjct: 244 TSRLSPHLRFGEISARQAWY-ATLAFMDEHHSARAGGEKFLSELIWRDFNYHQL-YHRRD 301

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                       I W  D    +AW++G TGFPIIDA MRQL   GWMHNR+RM+ ASFL
Sbjct: 302 ISRHDMRDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRMLVASFL 361

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+DWR GEE+F   L+DGD+ASN G WQW A  G D+ PYFR+FNP +QG++FD +
Sbjct: 362 TKNLLIDWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAPYFRVFNPILQGEKFDAE 421

Query: 422 GTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVD 462
           G ++RHW+PEL+ +  +++H    AP   L    ++L   YP PI+D
Sbjct: 422 GQYVRHWVPELSGLSNKWLHKPFEAPKDVLTSAGIALGSTYPKPIID 468


>gi|46906833|ref|YP_013222.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
           4b str. F2365]
 gi|46880099|gb|AAT03399.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
           4b str. F2365]
          Length = 467

 Score =  295 bits (756), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 178/490 (36%), Positives = 255/490 (52%), Gaps = 49/490 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC  +D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVNDNKALYHACKEND--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +       H    F + IE     C QQ         K+++NR       +RD+  
Sbjct: 58  QEIDKTA-----HLQIMFGEPIE-----CFQQLKDSLPSWDKVYFNRDETGYGAKRDEAA 107

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +    + ++  ++F DS L     +     + YK++TP+ K       + +++  P    
Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162

Query: 183 RLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                +   ++  F  Y  Q  +     P+  IGE+ A   L  F K  V  Y + RD P
Sbjct: 163 LKHENIRKESL--FLKYEEQFAEMTSDLPILDIGERAANTRLANFIKHDVADYDKARDFP 220

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  TS LS YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   
Sbjct: 221 ELDKTSHLSRYLRTGEISIRTIWQSLQE------TEATEGRATFEKELCWRDFYNMIYVS 274

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P+    +P       IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMIT
Sbjct: 275 FPN-QKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMIT 333

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++
Sbjct: 334 ASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQK 393

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471
           FD  G FIR ++ EL N+P +YIH P    +         L  +YP PIVDHK+     +
Sbjct: 394 FDSTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAI 453

Query: 472 NQYYAAKKQS 481
            +Y  +K+ S
Sbjct: 454 ARYEFSKEHS 463


>gi|47093329|ref|ZP_00231098.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b
           H7858]
 gi|226223217|ref|YP_002757324.1| DNA photolyase [Listeria monocytogenes Clip81459]
 gi|47018298|gb|EAL09062.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b
           H7858]
 gi|225875679|emb|CAS04382.1| Putative DNA photolyase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|328467416|gb|EGF38492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 1816]
          Length = 467

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 178/490 (36%), Positives = 254/490 (51%), Gaps = 49/490 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC   D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +       H    F + IE     C QQ         K+++NR       +RD+  
Sbjct: 58  QEIDKTA-----HLQIMFGEPIE-----CFQQLKDSLPSWDKVYFNRDETGYGAKRDEAA 107

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +    + ++  ++F DS L     +     + YK++TP+ K       + +++  P    
Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162

Query: 183 RLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                +   ++  F  Y  Q  +     P+  IGE+ A   L  F K  V  Y + RD P
Sbjct: 163 LKHENIRKESL--FLKYEEQFAEMTSDLPILDIGERAANTRLANFIKHDVADYDKARDFP 220

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  TS LS YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   
Sbjct: 221 ELDKTSHLSRYLRTGEISIRTIWQTLQE------TEATEGRATFEKELCWRDFYNMIYVS 274

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P+    +P       IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMIT
Sbjct: 275 FPN-QKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMIT 333

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++
Sbjct: 334 ASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQK 393

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471
           FD  G FIR ++ EL N+P +YIH P    +         L  +YP PIVDHK+     +
Sbjct: 394 FDSTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAI 453

Query: 472 NQYYAAKKQS 481
            +Y  +K+ S
Sbjct: 454 ARYEFSKEHS 463


>gi|254824139|ref|ZP_05229140.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J1-194]
 gi|254932137|ref|ZP_05265496.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
 gi|255521880|ref|ZP_05389117.1| DNA photolyase [Listeria monocytogenes FSL J1-175]
 gi|293583693|gb|EFF95725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
 gi|293593371|gb|EFG01132.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J1-194]
 gi|328475764|gb|EGF46505.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 220]
 gi|332311009|gb|EGJ24104.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott
           A]
          Length = 467

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 178/490 (36%), Positives = 254/490 (51%), Gaps = 49/490 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC   D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +       H    F + IE     C QQ         K+++NR       +RD+  
Sbjct: 58  QEIDKTA-----HLQIMFGEPIE-----CFQQLKDTLPSWDKVYFNRDETGYGAKRDEAA 107

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +    + ++  ++F DS L     +     + YK++TP+ K       + +++  P    
Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162

Query: 183 RLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                +   ++  F  Y  Q  +     P+  IGE+ A   L  F K  V  Y + RD P
Sbjct: 163 LKHENIRKESL--FLKYEEQFAEMTSDLPILDIGERAANTRLANFIKHDVADYDKARDFP 220

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  TS LS YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   
Sbjct: 221 ELDKTSHLSRYLRTGEISIRTIWQTLQE------TEATEGRATFEKELCWRDFYNMIYVS 274

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P+    +P       IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMIT
Sbjct: 275 FPN-QKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMIT 333

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++
Sbjct: 334 ASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQK 393

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471
           FD  G FIR ++ EL N+P +YIH P    +         L  +YP PIVDHK+     +
Sbjct: 394 FDSTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAI 453

Query: 472 NQYYAAKKQS 481
            +Y  +K+ S
Sbjct: 454 ARYEFSKEHS 463


>gi|254828345|ref|ZP_05233032.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           N3-165]
 gi|258600738|gb|EEW14063.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           N3-165]
          Length = 467

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 176/486 (36%), Positives = 254/486 (52%), Gaps = 45/486 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR++DNKALY AC   D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +  ++        F + +E     CL+Q         K+++NR        RD+  
Sbjct: 58  QEVDKTALL-----QIMFGEPVE-----CLKQLKETLPSWDKVYFNRDETGYGAERDEAA 107

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +     + I  ++F DS L     +     + YK++TP+ K       + +++  P    
Sbjct: 108 KTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +   N+   ++  F  +    PI   GE+ A   L  F K  V  Y + RD P +
Sbjct: 163 LKADNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPEL 222

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS YL  G +S R  W  L+E       +   G   +  EL WR+FY  +   +P
Sbjct: 223 DKTSHLSRYLRTGEISVRTIWQALQEN------EATEGRAIFEKELCWRDFYNMIYVSFP 276

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +    +P       IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRM+TAS
Sbjct: 277 NQ-KNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPTIQ ++FD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTIQSQKFD 395

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473
           P G FIR ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +
Sbjct: 396 PTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPIVDHKERRKLAIAR 455

Query: 474 YYAAKK 479
           Y  +K+
Sbjct: 456 YEFSKE 461


>gi|300765347|ref|ZP_07075330.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           N1-017]
 gi|300513908|gb|EFK40972.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           N1-017]
          Length = 467

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 178/490 (36%), Positives = 254/490 (51%), Gaps = 49/490 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC   D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQGFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +       H    F + IE     C QQ         K+++NR       +RD+  
Sbjct: 58  QEIDKTA-----HLQIMFGEPIE-----CFQQLKDSLPSWDKVYFNRDETGYGAKRDEAA 107

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +    + ++  ++F DS L     +     + YK++TP+ K       + +++  P    
Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162

Query: 183 RLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                +   ++  F  Y  Q  +     P+  IGE+ A   L  F K  V  Y + RD P
Sbjct: 163 LKHENIRKESL--FLKYEEQFAEMTSDLPILDIGERAANTRLANFIKHDVADYDKARDFP 220

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  TS LS YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   
Sbjct: 221 ELDKTSHLSRYLRTGEISIRTIWQTLQE------TEATEGRATFEKELCWRDFYNMIYVS 274

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P+    +P       IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMIT
Sbjct: 275 FPN-QKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMIT 333

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++
Sbjct: 334 ASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQK 393

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471
           FD  G FIR ++ EL N+P +YIH P    +         L  +YP PIVDHK+     +
Sbjct: 394 FDSTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAI 453

Query: 472 NQYYAAKKQS 481
            +Y  +K+ S
Sbjct: 454 ARYEFSKEHS 463


>gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Microcoleus chthonoplastes
           PCC 7420]
 gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Microcoleus chthonoplastes
           PCC 7420]
          Length = 475

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 177/465 (38%), Positives = 248/465 (53%), Gaps = 19/465 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AAC  S  KVI VF   P+   +  I+  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNIGLAAACQKSQ-KVIGVFCLDPDILERDDIAPARVTYMMGCLQELQQ 64

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             ++ G  +   HQ     +  + + +         + +NR  E     RD+ ++  L+ 
Sbjct: 65  RYAEAGSQLLILHQ-----NPSQGIPTLADTLNAKAVVWNRDVEPYARTRDRTVQDALEE 119

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL------PVPAI 182
           + I  +SF D +L  PG I  ++   YKVYTPF K        A   SL           
Sbjct: 120 KGIAVESFWDQLLHAPGEIRTNSGNPYKVYTPFWKNWKDQAKAAPAESLKNGEGLTETEQ 179

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +   V    +P   +  F   +  M   GE+ A   L +FC   +  Y  QR++PAI G
Sbjct: 180 DVVKKVGVMELPTAKELGFTWDNSLMLEPGEKAAKQRLEEFCDRAIDDYQHQRNLPAIDG 239

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           TS+LS  L  G +  R  W   +         + + G  +W  EL WREFY+H + F+P 
Sbjct: 240 TSRLSAALKFGAIGIRTVWQATQTAIERSRSDETRDGIQTWQQELAWREFYQHALYFFPE 299

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G P+    E   W+ +  L QAW +G TG+PI+DAAMRQLN  GWMHNR RMI ASF
Sbjct: 300 LASG-PYRDTFENFPWDNNQTLFQAWCEGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASF 358

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL+++W+ GE YFM +L DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q +++DP
Sbjct: 359 LTKDLIINWQWGETYFMQKLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKYDP 417

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
            G +IR WLPEL+++ T+ +       D+   S  YP PIVDHKK
Sbjct: 418 DGEYIRQWLPELSSLDTKDLVTGKISSDECS-SCGYPEPIVDHKK 461


>gi|302693713|ref|XP_003036535.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8]
 gi|300110232|gb|EFJ01633.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8]
          Length = 587

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 181/516 (35%), Positives = 268/516 (51%), Gaps = 58/516 (11%)

Query: 13  WLR-NDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           W+R  D+RI DN+AL    A    +   ++A+++ +P+ +  H   AR+  F+  +L  +
Sbjct: 74  WMRMQDMRIEDNRALALASAEAQKTKKPLVAIYVISPQDYAAHDRGARRIDFMLRNLRII 133

Query: 69  QKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLE 124
           +  L +  I   V  +   S     I  L S        KL+ N +YE++E+RRD ++ E
Sbjct: 134 KIKLDEMHIPLHVVTHAPRSTLPRRIISLLSLVGAH---KLYANIEYEVDELRRDIQVCE 190

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL---PVPA 181
              +  +      D  ++ PG  +      Y VY+PF++  +  L  +  R L   P PA
Sbjct: 191 IAKKDGMKATFVHDKCIVEPGVAVKKDGSYYAVYSPFQRLWLATLNDSQGRFLDPSPEPA 250

Query: 182 IRLT--------GPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEK- 226
                       G +   N+P   +    A D        +P GE+ AL +L +F   K 
Sbjct: 251 ANSKSVRKHEKLGDLFEGNVPETVEGFELAEDDRKKMAEYWPAGEEAALLVLDRFLSTKS 310

Query: 227 -----------------------VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
                                  ++ Y ++RD      TS++SPYL+ GV+S R+C    
Sbjct: 311 RPEQAGGVNPLSQGAEESDKYSRIHVYGDERDRVNADTTSRISPYLASGVISARRCVRST 370

Query: 264 KEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-NKDS 320
            +      +     +G   W+ EL WR+FY  ++  +P V MG+PFI     I W   D 
Sbjct: 371 MKLTGSSKVDGGRNTGIGRWVQELAWRDFYVSVLVGFPRVSMGRPFIEKYADIVWEGGDI 430

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
             ++AWK+G TG+PI+DA MR +   GW+HNRLRM TA FLVKDL+VDWR+GE Y+M  L
Sbjct: 431 SEVRAWKEGRTGYPIVDAGMRCIKETGWLHNRLRMTTAMFLVKDLMVDWRVGERYYMQNL 490

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           +DGDLASNNGGWQW+ASTG D  PYFRIFNP +Q ++ DP+G FIR +LPEL ++  + I
Sbjct: 491 IDGDLASNNGGWQWSASTGVDPAPYFRIFNPYLQSEKADPEGDFIRMFLPELKSLKGKEI 550

Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           H P + + K    L YPLPIV H +A    + ++ A
Sbjct: 551 HNPPANVAKR---LGYPLPIVKHSEAKDRAIRRFKA 583


>gi|114321405|ref|YP_743088.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227799|gb|ABI57598.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 479

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 181/487 (37%), Positives = 261/487 (53%), Gaps = 33/487 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR+TDN AL  A       VIAV++  PE+  Q+   A    +++ SL  +  
Sbjct: 6   LVWLRRDLRLTDNPALDQAARRG-GPVIAVYLHAPEETPQYPPGAASHWYLHHSLKALGP 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+Q GI     +      ++  L +         +++NR YE + V RD+ +++ L+  
Sbjct: 65  ALAQAGIPLVLRRGP----ALATLRALIRATGAGAVYWNRLYEPDAVARDRTVKQALRTE 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLRSLPVPAIR 183
            + C+SF  ++L  P ++ N A + Y+ +TPF +A  +    A      DLR  PVPA+ 
Sbjct: 121 GLDCRSFPTALLHEPWAVRNQADRPYRAFTPFWRACRRQPPPAAPLPAPDLRDRPVPAVE 180

Query: 184 LTGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                    +PR    P+   +   +  GE  AL  L  F  +++  Y + RD PA  GT
Sbjct: 181 GLDLAALGLLPR---TPWDTGLRNTWQAGESAALARLEAFAADRLARYAQDRDRPAEPGT 237

Query: 243 SQLSPYLSIGVLSPRQCWNRL---KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           S LSP L  G LSPRQ W ++   +E  V     P+    ++L+EL WREF  HL+  +P
Sbjct: 238 SGLSPALHFGELSPRQVWWQVMAAREAGV-----PEDACETFLSELGWREFAHHLLWSHP 292

Query: 300 SVCMGKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            +    P         W  D     L AW+ G TG P++DA M +L   GWMHNR+RM+T
Sbjct: 293 DLG-DAPVDDRFGAFPWRPDPGDGWLHAWQAGRTGIPLVDAGMHELWQTGWMHNRVRMVT 351

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFLVK L + W+ GE +F   L+D D ASN  GWQW A  G D+ PYFRIFNP  QG+R
Sbjct: 352 GSFLVKHLRLPWQRGERWFRDTLVDWDAASNAMGWQWVAGCGADAAPYFRIFNPVRQGER 411

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKACHHTL 471
           FDPQG ++R WLP L N+P +YIH    AP + L +  ++L  +YP P++D +      L
Sbjct: 412 FDPQGRYVRRWLPALANLPDKYIHAPWTAPEAVLRRAGVTLGSDYPCPLIDLRLGREQAL 471

Query: 472 NQYYAAK 478
           + + A K
Sbjct: 472 SAFQAIK 478


>gi|154296018|ref|XP_001548442.1| hypothetical protein BC1G_13162 [Botryotinia fuckeliana B05.10]
 gi|150843814|gb|EDN19007.1| hypothetical protein BC1G_13162 [Botryotinia fuckeliana B05.10]
          Length = 607

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 173/486 (35%), Positives = 257/486 (52%), Gaps = 27/486 (5%)

Query: 13  WLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR  DN AL  A   +      ++ ++I +P+ +  H  +  +  FI  +L  ++
Sbjct: 116 WFKCDLRTKDNTALSMASQKAKELGIPLVTMYIVSPQDFEAHLTAPVRVDFILRTLDILK 175

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY-NRQYEINEVRRDKLLEKRLQ 128
           K L++  I   Y +  +    +E      L +     FY N +YE++E+RR+  + +   
Sbjct: 176 KDLAKLDIPL-YVETIDKRKRVESRILELLGEWGCSHFYANMEYEVDELRREARMVRACV 234

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSL-------PV 179
            + IC     D+ ++ PG + +   + Y VYTP+ K+ +  + + +DL  L       P 
Sbjct: 235 EKGICMDVIHDTCVVRPGELKSGQGKQYAVYTPWFKSWVAYVHENSDLLELFDAPEKNPS 294

Query: 180 PAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            A +    +  + IP             +    M+P GE  A   L KF  EK+  Y + 
Sbjct: 295 SARKTFAKLFETEIPDAPKNKSLTSEEKERFRSMWPAGEHAAHERLSKFADEKINKYQDH 354

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ P++  TS LS + + G LS R      ++      L     G  +W++E+ WR+FY+
Sbjct: 355 RNFPSLNSTSSLSVHFASGTLSSRTAIRTARDHNNTKKLNAGYQGIQTWISEVAWRDFYK 414

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P VCM KPF P    IEW  +    QAW +G TG+PI+DAAMRQLN  G+MHNR
Sbjct: 415 HVLVHWPYVCMNKPFKPEYTNIEWEYNRAHFQAWTEGRTGYPIVDAAMRQLNHCGYMHNR 474

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI  SFL K LL+DWR+GE YFM  L+DGD ASNNGGW + ASTG D  PYFRIFNP 
Sbjct: 475 SRMIVGSFLAKHLLLDWRMGERYFMEHLIDGDFASNNGGWGFCASTGVDPQPYFRIFNPL 534

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----NYPLPIVDHKKACH 468
           +Q ++FD +G +IR W+ EL  V  + IH P+   DK    +     YP  IV+HK +  
Sbjct: 535 LQSEKFDAEGEYIRKWVEELKGVKGKAIHEPYG--DKEAAKIAKKSGYPERIVEHKVSRE 592

Query: 469 HTLNQY 474
             L +Y
Sbjct: 593 RCLKRY 598


>gi|91774946|ref|YP_544702.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
           flagellatus KT]
 gi|91708933|gb|ABE48861.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
           flagellatus KT]
          Length = 481

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 265/493 (53%), Gaps = 40/493 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVW R DLR  D+ ALY A  +S+ +V+  F+   +         R+  FI+ S+ 
Sbjct: 1   MTKSLVWFRRDLRDYDHAALYHALKDSE-QVVCAFVFDTDILDGLPRDDRRVEFIWESVR 59

Query: 67  QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +++ +L ++G  ++ ++ + +      E + +      V  ++ NR YE   V+RD  + 
Sbjct: 60  ELKLALQERGGDLLVRHGKAT------EEIPALASVLGVECVYCNRDYEPAAVKRDDTVS 113

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-I 182
           ++L  + I  KSF D V+     I+  +   + V+TP++ A ++ L    L++ PV   I
Sbjct: 114 QQLGTQGIAFKSFKDQVIFERDEIMTKSGTPFSVFTPYKNACLRKLDDFHLKAYPVDRYI 173

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  P  +P      F   +      P G    + +   F  E++  Y + RD PA+
Sbjct: 174 HHLAQSAPQPMPSLESLAFARSNLKQLRLPTGMSGGMALFEDFS-ERMPRYRDARDFPAL 232

Query: 240 QGTSQLSPYLSIGVLS----PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +G S LS +L  G +S     R  W            +  +GA +WLNEL+WR+FY  ++
Sbjct: 233 KGPSYLSVHLRFGTVSIRHLARTAWQ-----------QGGAGAETWLNELLWRDFYFQVL 281

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P V  G  F P  E I +     L +AW +G TG+P++DAAMRQ+N  G+MHNRLRM
Sbjct: 282 YHHPQVAEGHSFKPEFEHIPFPNGESLFKAWCEGRTGYPLVDAAMRQINQTGYMHNRLRM 341

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + A FLVKDLL+DWR GE YF  +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q 
Sbjct: 342 VAAGFLVKDLLIDWRWGERYFAEKLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQS 401

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL----NYPLPIVDHKKAC 467
           ++FDP+G FIR ++PEL     + IHAP  W    L +  L L    +YP P+VDH    
Sbjct: 402 EKFDPEGKFIRKYVPELQPCDDKEIHAP--WLIPPLRQQALGLVIGKDYPAPVVDHAMRR 459

Query: 468 HHTLNQYYAAKKQ 480
              L+ Y  A  +
Sbjct: 460 EQVLSLYRQASSR 472


>gi|224498666|ref|ZP_03667015.1| hypothetical protein LmonF1_02791 [Listeria monocytogenes Finland
           1988]
          Length = 467

 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 172/486 (35%), Positives = 253/486 (52%), Gaps = 45/486 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR++DNKALY AC   D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +  ++        F + +      CL+Q         K+++NR        RD+  
Sbjct: 58  QEVDKTALL-----QIMFGEPVG-----CLKQLKETLPSWDKVYFNRDETGYGAERDEAA 107

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +     + I  ++F DS L     +     + YK++TP+ K       + +++  P    
Sbjct: 108 KTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +   N+   ++  F  +   FPI   GE+ A   L  F K  +  Y + RD P +
Sbjct: 163 LKADNIRKENLFPKYEEQFAEMTCDFPILDSGEKTANTRLANFIKHDIADYDKARDFPEL 222

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   +P
Sbjct: 223 DKTSHLSRYLRTGEISIRTIWQALQE------TEATEGRATFEKELCWRDFYNMIYVSFP 276

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +    +P       IEW  +    +AW+ G TGFP++DAAMRQL   GWMHNRLRM+TAS
Sbjct: 277 NQ-KNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473
           P G FIR ++ EL N+P +YIH P    +         L  +YP P++DHK+     + +
Sbjct: 396 PTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLIDHKERRKLAIAR 455

Query: 474 YYAAKK 479
           Y  +K+
Sbjct: 456 YEFSKE 461


>gi|290892787|ref|ZP_06555778.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J2-071]
 gi|290557599|gb|EFD91122.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J2-071]
          Length = 467

 Score =  292 bits (748), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 173/485 (35%), Positives = 251/485 (51%), Gaps = 39/485 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC   D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +       H    F + IE     C QQ         K+++N        +RD+  
Sbjct: 58  QEIDKNA-----HVQIMFGEPIE-----CFQQLKDTLPSWDKVYFNLDETGYGAKRDEAA 107

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +    + ++  +SF DS L     +     + YK++TP+ K   + + +   +    P  
Sbjct: 108 QAFFDEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPEN 167

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                + P    +F +       P+   GE+ A   L  F K  +  Y + RD P +  T
Sbjct: 168 IWKESLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKT 225

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   +P+  
Sbjct: 226 SHLSRYLRTGEISIRTIWQELQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ- 278

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +P       IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL 
Sbjct: 279 KNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLT 338

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP  
Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTA 398

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476
            FIR ++ EL N+P +YIH P    +         L  +YP P++DHK+     + +Y  
Sbjct: 399 KFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEF 458

Query: 477 AKKQS 481
           +K++S
Sbjct: 459 SKERS 463


>gi|297539339|ref|YP_003675108.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301]
 gi|297258686|gb|ADI30531.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301]
          Length = 479

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 182/477 (38%), Positives = 261/477 (54%), Gaps = 49/477 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLLQVQ 69
           LVW R DLR  D+ ALY A  +S  KV  VF+       Q    A R+  FI+ S+ +++
Sbjct: 14  LVWFRRDLRDYDHAALYHALKSS-KKVYCVFVFDTAILNQLNDKADRRVEFIWESVRELK 72

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            SL + G   IV       N  D I  L +  L   V  +F N  YE + + RD  + ++
Sbjct: 73  TSLQKHGSDLIVLH----GNAGDEIPKLANTLL---VNAVFTNHDYEPSAITRDAHVAEQ 125

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    I    + D V+     +LN + + Y V+TP++   ++ +     ++ PV      
Sbjct: 126 LNKSSIAFHHYKDHVIFEKDEVLNLSGKPYCVFTPYKNMWLKTVNDFFFKAYPVDN---- 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQR 234
                +N+ +    PF +++ +            P G Q  L +   F  E++  Y + R
Sbjct: 182 ---HLNNLAKTNASPFISLEDLGFKHTNLASMRLPTGMQGGLTLFNDFI-ERMSRYKDAR 237

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D PAI+G S LS +L  G +S R           + +    +GA +WL+ELIWR+FY  +
Sbjct: 238 DFPAIKGVSYLSVHLRFGTISIRHLAR-------EAMQSANTGAQTWLSELIWRDFYVQI 290

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +   PSV  G+ +    E +++  D+ L QAW  G TG+P++DAAMRQLNT G+MHNRLR
Sbjct: 291 LHHNPSVAAGRAYKVEFESLKFPNDTALFQAWCDGKTGYPLVDAAMRQLNTTGFMHNRLR 350

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFLVKDLL+DWR GE YF  +L+D DL++NNGGWQWAASTG D+ P+FRIFNP  Q
Sbjct: 351 MVAASFLVKDLLIDWRWGERYFAEKLIDFDLSANNGGWQWAASTGCDAQPWFRIFNPITQ 410

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLPIVDH 463
            +RFD QG FIR ++PEL     + IHAP  W      L + +LS+  +Y  P+VDH
Sbjct: 411 SERFDAQGKFIRKYVPELTKCNDKEIHAP--WLIPLLRLQELNLSIGKDYAAPVVDH 465


>gi|71909505|ref|YP_287092.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
           RCB]
 gi|71849126|gb|AAZ48622.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
           RCB]
          Length = 470

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 182/488 (37%), Positives = 266/488 (54%), Gaps = 41/488 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD----AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           LVW R DLR  D+ AL AA   +     A V    I  P   R      R+ HFI  SL+
Sbjct: 7   LVWFRRDLRDHDHAALSAALAEAQQVYCAFVFDSEILDPLPTRHD----RRVHFIRESLV 62

Query: 67  QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           ++  +L  +G  ++ ++ Q      +++ + +   +  V+ +F NR YE +  RRD  + 
Sbjct: 63  ELDAALRARGGGLIIRHGQ------AVDEIPALARRLGVSAVFTNRDYEPSAKRRDAQVA 116

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++L++  I      D  +     +L  A + + V+TP++ A ++ L  AD  + P    R
Sbjct: 117 RQLRNDDIAFHGVKDQAIFDGDEVLTQAGKAFSVFTPYKNAWLKRLTTADYAAWPCDG-R 175

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ----NALHILRKFCKEKVYYYVEQRDIPAI 239
           L G    + IP   +  F   D +  +G Q     A  +   F ++++  Y   RD PA+
Sbjct: 176 LAGQEL-AGIPTLEEIGFTPTD-LAELGIQPGMSGAKGLWDDFSRDRIERYGSLRDFPAV 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +G S LS +L  G +S RQ   +      D          +WL+ELIWR+FY  ++  +P
Sbjct: 234 KGVSYLSVHLRFGTISIRQLVRQALAHQAD----------TWLSELIWRDFYFMILDHFP 283

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V  G  F P  + I+W        AW +G TG+P++DAAMRQLN  GWMHNRLRM+ AS
Sbjct: 284 HVA-GHAFKPEYDAIQWASRPEAFAAWCEGCTGYPLVDAAMRQLNFSGWMHNRLRMVVAS 342

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDL +DWR+GE+YF  QL D DL++NNGGWQWA+S+G D+ PYFRIFNP  Q ++FD
Sbjct: 343 FLTKDLGIDWRLGEKYFAEQLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVTQSEKFD 402

Query: 420 PQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSL----NYPLPIVDHKKACHHTLNQ 473
            +G FIR ++PEL  V  +YIHAP     +++  L +    +YP PIVDH  A   TL +
Sbjct: 403 AEGKFIRRYVPELAKVHDKYIHAPWKMGRIEQEALGVVIGRDYPSPIVDHATARDETLAR 462

Query: 474 YYAAKKQS 481
           Y   KKQ+
Sbjct: 463 YAVVKKQA 470


>gi|71023993|ref|XP_762226.1| hypothetical protein UM06079.1 [Ustilago maydis 521]
 gi|46101669|gb|EAK86902.1| hypothetical protein UM06079.1 [Ustilago maydis 521]
          Length = 655

 Score =  292 bits (747), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 186/525 (35%), Positives = 268/525 (51%), Gaps = 61/525 (11%)

Query: 11  LVWLR-NDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           + W+R +DLRI DN+AL  A         +     +IA+F+ TP  +  H   AR+  F+
Sbjct: 125 VYWMRMHDLRIHDNRALAHASSLAAARRKNGKGGHLIALFVITPADYSAHDRGARRIDFV 184

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDS--IEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
             +L  ++    +  I F  +  S  D +   E + S C Q   ++L  N +YE++E+ R
Sbjct: 185 LRTLASLKSQFDKLDIPFVVYTYSGEDRAQVGEKVFSLCEQCDASQLTANIEYEVDELWR 244

Query: 120 D-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQA 172
           D  +LE + +  V      D  ++PPG I  +  + Y V++P+ +   ++      L++A
Sbjct: 245 DLAMLEAKDKKGVSFSLLHDCYVVPPGRIKTNDGRPYSVFSPWNRRWTESISKDMSLIEA 304

Query: 173 D---------LRSLPVPAIRL------TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
                     +RS P            TG   P  +  F     + +  ++P  +Q A  
Sbjct: 305 SEDPEANPKSIRSHPKLGALFELSKLGTGYGIPEELSGFECKDREYMAKLWPATDQAAHQ 364

Query: 218 ILRKFCKEK--------------------------VYYYVEQRDIPAIQGTSQLSPYLSI 251
           +L  F K K                          +  Y E R++ +  GTS++SPYL+ 
Sbjct: 365 VLDNFIKGKGGETALDRAANEPSTAEVGANAKDSRLARYAEGRNLLSENGTSRISPYLAA 424

Query: 252 GVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           GV+S R+C  R K+     L +   SG   W  E+ +R+FY H++A +P VCMG  FI  
Sbjct: 425 GVVSARECLRRTKQLTKGKLHVGRDSGVAMWNTEISFRDFYAHVLAAWPKVCMGHAFITK 484

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            E + W  DS  L AWKQG TG+PI+DAA RQ    G++HNR RMI+A FL K LL DWR
Sbjct: 485 YEDVVWETDSSTLDAWKQGRTGYPIVDAAQRQCIQQGYIHNRGRMISAMFLTKHLLHDWR 544

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE +F    +D D ASNNGGWQW+ASTG D  PYFRIFNP  Q ++ DP G +IRH++P
Sbjct: 545 HGERHFSLNFIDQDFASNNGGWQWSASTGTDPQPYFRIFNPLSQSEKCDPHGDYIRHFVP 604

Query: 431 ELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKACHHTLNQY 474
           EL NV    IH P   L K +   L YP PIV+H +A    L +Y
Sbjct: 605 ELKNVKGNAIHDPFHRLSKAEFEKLGYPKPIVEHAQARQRALKRY 649


>gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652]
 gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652]
          Length = 482

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 178/495 (35%), Positives = 263/495 (53%), Gaps = 30/495 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    ++W R DLR+ DNKAL AA H S   +I+++I  PE      + A QS +++
Sbjct: 2   ANDAAKPLILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQSWWLH 60

Query: 63  ASLLQVQKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
            SL  +  SL ++  G++    +          L S   Q     +F+NR+Y+   +  D
Sbjct: 61  HSLEALDGSLRKRRGGLLLASGEALGV------LRSLIRQSDADAVFWNRRYDPPGISID 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSL 177
             +E  L+ + I  KSF   +L  P  ++  +   Y+VYTPF +AL +++     D+ S 
Sbjct: 115 AHIEHELEKQAIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRALERSIEPEPLDIPSK 174

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
              A +L G     +       P  A +   ++  GE+ A   LR F ++++  Y E RD
Sbjct: 175 LQLASKLPGSEKLESWKLLSTQPDWASNFADLWTPGEEGAQEKLRTFIEDRLDGYKENRD 234

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PA   TS LSP+L++G +SP + W+  +     L   P +    +  E+ WR+F  HL+
Sbjct: 235 YPAKPATSMLSPHLALGEISPARIWDATRGLSKHL---PAADIVHFRKEIAWRDFSYHLL 291

Query: 296 AFYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           A +P +        W ++    EW        AW +G TG+PI+DA MRQL   GWMHNR
Sbjct: 292 AHFPRLATAN----WDDRFDRFEWGSAEEDFNAWSRGMTGYPIVDAGMRQLWRYGWMHNR 347

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI ASFL+KDL+VDWR GE +F   L+D D A+N   WQW A +G D+ P+FR+FNP 
Sbjct: 348 VRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRVFNPV 407

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKA 466
           +QG++FDP G F+R  +PEL  +  +YIH    AP S LD  D+ L   YP P+VDH  A
Sbjct: 408 LQGEKFDPDGDFVRSHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGA 467

Query: 467 CHHTLNQYYAAKKQS 481
               L  Y A +  +
Sbjct: 468 RKRALAAYNAIRGAA 482


>gi|254830427|ref|ZP_05235082.1| hypothetical protein Lmon1_03662 [Listeria monocytogenes 10403S]
          Length = 467

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 175/486 (36%), Positives = 255/486 (52%), Gaps = 45/486 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC   D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +  ++        F + +E     CL+Q         K+++NR        RD+  
Sbjct: 58  QEVDKTALL-----QIMFGEPVE-----CLKQLKETLPSWDKVYFNRDETGYGAERDEAA 107

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +     + I  ++F DS L     +     + YK++TP+ K       + +++  P    
Sbjct: 108 KTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +   N+   ++  F  +    PI   GE+ A   L  F K  V  Y + RD P +
Sbjct: 163 LKADNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPEL 222

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS YL  G +S R  W  L+E       +   G   +  EL WR+FY  +   +P
Sbjct: 223 DKTSHLSRYLRTGEISVRTIWQALQEN------EATEGRAIFEKELCWRDFYNMIYVSFP 276

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +    +P       IEW  +    +AW+ G TGFP++DAAMRQL   GWMHNRLRM+TAS
Sbjct: 277 NQ-KNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH--SWLDKND----LSLNYPLPIVDHKKACHHTLNQ 473
           P G FIR ++ EL N+P ++IH P   S +++ +    L  +YP PIVDHK+     + +
Sbjct: 396 PTGKFIREYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIVDHKERRKLAIAR 455

Query: 474 YYAAKK 479
           Y  +K+
Sbjct: 456 YEFSKE 461


>gi|325568101|ref|ZP_08144542.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
           12755]
 gi|325158302|gb|EGC70453.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
           12755]
          Length = 473

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 173/491 (35%), Positives = 264/491 (53%), Gaps = 46/491 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M++H++W R DLR+ DN AL  A  +  ++ +++ VF    +Q+      A    + +++
Sbjct: 1   MAIHVMWFRKDLRLEDNTALTEALLSLQANDQLLCVFHLNEKQFLP---DAPSHDYFFSA 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +    +++ ++ +           ++ + L  +      ++L++N        +RD  ++
Sbjct: 58  VAHFIEAVKKQNLTIHL-LTGTLTEAFDQL--FACYPEWSQLYFNFDNRGYGRKRDLYIK 114

Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + ++ + V   SF++  L  P  +       YK +TP+ K  IQ         LP P  +
Sbjct: 115 ELVEKKGVTVHSFEEHHLHQPTEVTKEDGTYYKKFTPYYKKWIQ---------LPKPVYQ 165

Query: 184 LTGPVTPSNIPRFFDYP-FQAIDPMFP-------------IGEQNALHILRKFCKEKVYY 229
               +       F D P F+A   +               +GE  A   L+ F ++++  
Sbjct: 166 KQA-LDFEKAAHFNDAPHFKAGTALLAEVLNNRKTDFSTIVGEDYAHKQLQAFVQKRLAA 224

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RD+P+I+GTS+LSP+LS G +S R+ W   +       + P +G  ++L EL WR+
Sbjct: 225 YEKDRDLPSIKGTSRLSPFLSFGQISIRKVWAACQG------MPPSTGKATFLKELAWRD 278

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FY H++ F          I     ++W KD      W+ G TG+PIIDAAMRQLN  GWM
Sbjct: 279 FY-HMIYFTHPEQKNYELIEKYRNMDWQKDEEAFNKWQAGQTGYPIIDAAMRQLNQTGWM 337

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRMI ASFL KDLL+DWR GE YF  QL+D D ASN GGWQWAASTG D+VPYFRIF
Sbjct: 338 HNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIF 397

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463
           NP  QGK+FD +GT+I+ ++PEL  +P ++IH P+   D+        L  +YPLPIVDH
Sbjct: 398 NPITQGKKFDKEGTYIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDH 457

Query: 464 KKACHHTLNQY 474
            +A    L+ Y
Sbjct: 458 NEARKRALDLY 468


>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
 gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
          Length = 466

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 178/492 (36%), Positives = 256/492 (52%), Gaps = 45/492 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L W+R DLR+ D+ AL  A      +VI VFI      ++   ++++  F+++ L 
Sbjct: 1   MTTILWWIRRDLRLHDHPALEYALQK--GRVIPVFILDDRLLQKE--ASKRKQFLFSGLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+ + L ++G      +     +    L     +    ++     Y     RRD  + + 
Sbjct: 57  QLDEDLRKRGSQLIIRRGEPLAE----LTRLIQETGAEEIVALEDYSPYARRRDSHIARE 112

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   +    F    + PP  +L      Y V+TPF +A          ++LP        
Sbjct: 113 LPLHL----FAGETVYPPSLVLKPDGSPYTVFTPFSRAW---------KALP-----FAS 154

Query: 187 PVTPSNIPRFFDYPFQAID-PM--------FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           P   S   RF   P + +  P+        FP GE  AL  L  F       Y + R+  
Sbjct: 155 PSVVSLPERFPAVPDKLVSLPIPEAIFLQDFPPGELEALRRLENFLSGPAREYADGRNRL 214

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLM 295
              GTS LSPY   G+LSPR    ++++  + +   P  K G  +WLNELIWREFY  ++
Sbjct: 215 DQPGTSFLSPYFRFGMLSPRWAVFQVRK-MIQITSSPDEKRGYEAWLNELIWREFYISIL 273

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP V +   F P    IEW      LQAWK+G TG+P++DAAMRQL   GWMHNR RM
Sbjct: 274 YHYPHV-LAMAFNPALRAIEWRDAPSELQAWKEGKTGYPVVDAAMRQLKATGWMHNRARM 332

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL KDLL++W+ GE++FM  L+DGD A+NNGGWQW A  G D+ PYFRIFNP +Q 
Sbjct: 333 IVASFLTKDLLINWQEGEQWFMQNLVDGDPAANNGGWQWTAGVGTDAAPYFRIFNPVLQS 392

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------NYPLPIVDHKKACHH 469
            +FDPQG +I+ W+PEL +VPT++IHAP +      +SL      +YP P+VDH++    
Sbjct: 393 AKFDPQGRYIKTWVPELTSVPTEFIHAPWTMPLSLQISLGVRIGRDYPTPMVDHQEVRGR 452

Query: 470 TLNQYYAAKKQS 481
            L  Y  ++ ++
Sbjct: 453 VLEAYRTSQGKT 464


>gi|289208005|ref|YP_003460071.1| deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix]
 gi|288943636|gb|ADC71335.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix]
          Length = 469

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 177/479 (36%), Positives = 253/479 (52%), Gaps = 25/479 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR+ D  AL+AA     A VI VFI  P++  Q    A  + +++ SL  + +
Sbjct: 6   LVWLRQDLRLADQPALHAAVERGGA-VIPVFIHAPDEDLQWPPGAASNWWLHHSLQSLNE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L++ G         + D     L     +   T +++NR YE   V RD+ ++  L+  
Sbjct: 65  ALNKAGSPLVVRAGPSLDT----LRELVAETGATAVYWNRVYEPARVLRDQGIKAGLRAD 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+ ++L+ P  +       Y+V+TPF +A +Q  ++ +   LP P+ RL  P  
Sbjct: 121 GLDVRSFNAALLIEPWDVETGQGGPYRVFTPFWRACLQRGIEQN--PLPAPS-RLPAPGK 177

Query: 190 PSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           P       D            +   +  GE+ A   L +F ++ +  Y + RD P   GT
Sbjct: 178 PPRSLMLDDLELLPPIDWAGGLRATWTPGERGARDRLERFLEQAIAGYADSRDRPDQDGT 237

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP+L  G +SPRQ    L++  V L  K   G  S++ EL WR+F  H++  +P   
Sbjct: 238 SRLSPHLHFGEVSPRQVLRALRDAGVSLDHK---GPESFVRELGWRDFAHHVLYHFPHTT 294

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +P  P  E   W +    L AW+QG TG PI+DAAMRQL   GWMHNRLRM+  SFL 
Sbjct: 295 E-QPLNPRFEDFPWRESEADLAAWQQGRTGIPIVDAAMRQLWETGWMHNRLRMVVGSFLT 353

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+L + W  G  +F   L+D DLASN  GWQWA   G D+ PYFRIFNP  QG+++DP G
Sbjct: 354 KNLRLHWGHGARWFWDTLVDADLASNTLGWQWAGGCGADAAPYFRIFNPQRQGEQYDPDG 413

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            F+R +LP L    T+YIHAP +       +  YP PIVD K +    L  + A KK S
Sbjct: 414 RFVRSFLPVLKKTETRYIHAPGA-----GGTPGYPDPIVDLKASRQAALEAFEAIKKTS 467


>gi|186473227|ref|YP_001860569.1| deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
 gi|184195559|gb|ACC73523.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
          Length = 504

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 188/504 (37%), Positives = 270/504 (53%), Gaps = 60/504 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---------DAKVIAVFIATPEQWRQHGISARQS--H 59
           LVW R DLR  DN ALY A  +          D  ++   I    +   H    + +   
Sbjct: 15  LVWFRRDLRTGDNAALYYALRHCERVWCAFVFDTTILQPLINWAHRRNAHAGKVQDARIE 74

Query: 60  FIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           FI AS+ ++ +SL + G   IV          D ++ +     Q  V  +F N  YE + 
Sbjct: 75  FILASVEELDRSLEEGGGALIVLH-------GDPVDAIPKLAAQLPVDAVFTNHDYEPSA 127

Query: 117 VRRDKLLEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
           + RD+ +  RL+    R++  +F D V+     +LN   + + V+TP++ A ++ L   D
Sbjct: 128 IERDETVADRLRADGRRLL--TFKDQVIFERDELLNGQRKPFAVFTPYKNAWLKQLTPFD 185

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDY-----------PFQAIDPMFPIGEQNALHILRKF 222
           L+  P P  R +  +  +  PR  D+           P +  +     G   A   L  F
Sbjct: 186 LK--PYPVERYSQSL--ARPPRTLDHAWPTLAKMGFAPGKLAETELQAGMSGAQARLEDF 241

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSW 281
              ++  Y E+RD+PA +GTS LS +L  G +S R    RL  E   + ++P   GA +W
Sbjct: 242 LT-RIDSYAERRDLPAARGTSHLSVHLRFGTVSIRTL-ARLAHE---MSLRPGGQGAATW 296

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW--NKDSH-LLQAWKQGYTGFPIIDA 338
           L+ELIWR+FY  ++A +P +   + F    + + W   KD+  L  AW  G TG+P++DA
Sbjct: 297 LSELIWRDFYFMILAHHPHIAKRESFKREFDALRWETGKDADALFAAWCDGRTGYPLVDA 356

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           AM QLN  G+MHNRLRM+TASFLVKDL +DWR GE YF  +L D D ++NNGGWQWAAST
Sbjct: 357 AMLQLNRTGFMHNRLRMVTASFLVKDLGIDWRRGERYFEEKLNDFDFSANNGGWQWAAST 416

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKND------ 451
           G D+ P+FRIFNP  Q ++FD QG FI+ +LPEL  VP ++IHAP  W  D +D      
Sbjct: 417 GCDAQPWFRIFNPVTQSEKFDSQGLFIKRFLPELGKVPAKWIHAP--WQADPDDLEDWGV 474

Query: 452 -LSLNYPLPIVDHKKACHHTLNQY 474
            L  +YP P+V+H KA   TL +Y
Sbjct: 475 VLGKDYPHPVVEHAKARQQTLARY 498


>gi|328860259|gb|EGG09365.1| hypothetical protein MELLADRAFT_34389 [Melampsora larici-populina
           98AG31]
          Length = 578

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 180/494 (36%), Positives = 265/494 (53%), Gaps = 34/494 (6%)

Query: 13  WLR-NDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           W+R  DLR+ DN+AL AA   +    A +I + I +P  +  H  SAR+  F+  +L+ +
Sbjct: 70  WMRMRDLRLADNRALSAASQVAQTLQAHLIVLHIFSPGDYHAHDRSARRIDFVLRNLIDL 129

Query: 69  QKSLSQKGIVFQYHQCSNFDD----SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  L +  I                 +E L+++     VT++F N ++E++E+RRD  L 
Sbjct: 130 RLRLRELNIPLYTISIEKRKTIPKRVVELLNAW----EVTRIFANIEHEVDELRRDIELI 185

Query: 125 KRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--PVPA 181
                + I      D+ L+ PG +L    + Y V++P++K    N++ +DL +     P 
Sbjct: 186 NLCHPQGIKVDLSHDTCLVEPGKVLTKENKPYSVFSPWQKNW-ANIINSDLSNHLDAAPE 244

Query: 182 IRLTGP--VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR--------KFCKEKVYYYV 231
           I+   P  +    +   F+    +  P F + ++ A  I          K     +  Y 
Sbjct: 245 IKGNDPSAMDDDRLQSLFEVEIPSFIPGFELPDEEAKRIRDYWEADTKPKSTPTILEEYS 304

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-------SGAFSWLNE 284
             R+ P + GTS+LS YL+ G++SPR C     E+        K       +G   W +E
Sbjct: 305 TLRNRPDLPGTSRLSAYLAAGIISPRTCVRITLEKNGKQFKNQKLQVDQRDTGIGMWQSE 364

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WR+FY+H++A +P V MG+ F    + + W KD   L+AWK G TGFP IDA MRQL 
Sbjct: 365 LGWRDFYQHVLAAWPRVSMGQNFNQKFDPMVWEKDESKLEAWKLGKTGFPFIDACMRQLL 424

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            +G+MHNR RM  A FL KDLL+DWRIGE++FM  L+DGDL SNNGGWQW++STG DS P
Sbjct: 425 EMGYMHNRGRMCVAMFLTKDLLIDWRIGEKWFMQHLVDGDLGSNNGGWQWSSSTGCDSQP 484

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDH 463
           YFRIF P  Q ++ DP G FIR ++PELN++  + IH P+  L  +    L YP PIVDH
Sbjct: 485 YFRIFAPLSQSEKSDPNGDFIRKYVPELNSLSGKAIHDPYKALSPDKFKKLGYPKPIVDH 544

Query: 464 KKACHHTLNQYYAA 477
                  L +Y  +
Sbjct: 545 SVVRKRALVRYKVS 558


>gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
 gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
          Length = 484

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 173/487 (35%), Positives = 252/487 (51%), Gaps = 30/487 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A +  S  L+W R DLR+ DN AL AA       V+AV+I   E             +++
Sbjct: 7   AMSNASPTLLWFRRDLRLADNPALTAAVRRGR-PVVAVYILDDEDAGDWASGGASRWWLH 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL ++ +SL  +G      + +    +   LD    +     +++NR YE     RD+ 
Sbjct: 66  HSLERLAESLRGRGSRLILRRGA----AAAVLDRLISETGAEAVYWNRCYEPWATARDQA 121

Query: 123 LEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           ++  L+ R    +SF+ S+L  P  I +     Y+V+TPF KAL       DL  LP P 
Sbjct: 122 IKASLRLRGHEVRSFNASLLREPWEIASKVGGPYRVFTPFWKALRAMGDPGDL--LPTPD 179

Query: 182 IRLTGPVTPSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
              T  V P++         P   D+ F  +   +  GE  A   L  F       Y ++
Sbjct: 180 RIPTLEVAPASDDIDAWALTPSKPDWAF-GLRAAWKPGEAAARQRLEAFLDGAAPEYAKR 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           R+ P   GTS+LSP+L  G + PRQ W+        +          +L+E+ WREF  H
Sbjct: 239 RNFPGTNGTSRLSPHLHFGEIGPRQIWHAASFHHTGMATD------QFLSEIAWREFSHH 292

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L+  +P +    P  P     +W+ D   L AW+ G TG+PI+DA MR+L   GWMHNR+
Sbjct: 293 LLFHFPMLPT-TPLRPEFADFQWSDDPGALAAWRHGMTGYPIVDAGMRELWATGWMHNRV 351

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFLVKDLL+ W++G  +F   L+D DLASN+  WQW A  G+D+ P+FR+FNP++
Sbjct: 352 RMIVASFLVKDLLLPWQVGARWFWDTLVDADLASNSASWQWVAGCGSDAAPFFRVFNPSL 411

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS--WLDKND----LSLNYPLPIVDHKKAC 467
           QG +FDPQGT++R W+PE+  +P   IH P     +D +D    L  +YPLPI+DH+ A 
Sbjct: 412 QGAKFDPQGTYVRRWVPEIAGLPDSIIHKPSDARLIDLSDAGIRLGHDYPLPIIDHRAAR 471

Query: 468 HHTLNQY 474
              L  +
Sbjct: 472 DRALTAF 478


>gi|47096881|ref|ZP_00234460.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254900179|ref|ZP_05260103.1| hypothetical protein LmonJ_10210 [Listeria monocytogenes J0161]
 gi|254911267|ref|ZP_05261279.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
 gi|254935594|ref|ZP_05267291.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
 gi|47014746|gb|EAL05700.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608175|gb|EEW20783.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
 gi|293589198|gb|EFF97532.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
          Length = 467

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 174/486 (35%), Positives = 256/486 (52%), Gaps = 45/486 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR++DNKALY AC   D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +  ++        F + +E     CL+Q         K+++NR        RD+  
Sbjct: 58  QEVDKTALL-----QIMFGEPVE-----CLKQLKETLPSWDKVYFNRDETGYGAERDEAA 107

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +     + I  ++F DS L     +     + YK++TP+ K       + +++  P    
Sbjct: 108 KTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +   N+   ++  F  +    PI   GE+ A   L  F K  V  Y + RD P +
Sbjct: 163 LKADNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPEL 222

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS YL  G +S R  W  L+E       +   G   +  EL WR+FY  +   +P
Sbjct: 223 DKTSHLSRYLRTGEISVRTIWQALQEN------EATEGRAIFEKELCWRDFYNMIYVSFP 276

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +    +P       IEW  +    +AW+ G TGFP++DAAMRQL   GWMHNRLRM+TAS
Sbjct: 277 NQ-KNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSL----NYPLPIVDHKKACHHTLNQ 473
           P G FIR ++ EL N+P +YIH P   S +++ +  L    +YP P++DHK+     + +
Sbjct: 396 PTGKFIRKYVKELANLPDKYIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIAR 455

Query: 474 YYAAKK 479
           Y  +K+
Sbjct: 456 YEFSKE 461


>gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 483

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 173/499 (34%), Positives = 268/499 (53%), Gaps = 37/499 (7%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    ++W R DLR+ DN+AL AA H S   +I ++I  P       + A Q+ +++
Sbjct: 2   AKDAAKPVILWFRKDLRLDDNQALTAA-HRSGRPIIPLYIGEPAAAGTGPLGAAQAWWLH 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + +SL ++             +++E L ++  +     +F+NR+Y+   +  D  
Sbjct: 61  HSLEALNRSLQKR----HGRLVLASGEALEVLRAFIKESGAEAVFWNRRYDPAGISIDAR 116

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           ++  L+ + I  +SF   +L  P  ++      Y+VYTPF +AL       D    P+ A
Sbjct: 117 IKHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRAL----EGGDEPEPPLEA 172

Query: 182 ---IRLTGPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
              +RLT  +  S        +P   D+    +D   P GE+ A   L  F ++ +  Y 
Sbjct: 173 PAELRLTSQLPTSETLESWKLLPTKPDWAGDFVDLWTP-GEEGAQQRLHAFVEDALEGYK 231

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E RD PA   TS LSP+L++G +SP + W+  +     +   P +    +  E+ WREF 
Sbjct: 232 ENRDYPARPATSMLSPHLALGEISPARIWDATRGLSQRV---PAADIVHFRKEIAWREFS 288

Query: 292 RHLMAFYPSVCMGKPFIPWTEK---IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
            HL+  +P +        W ++   +EW  DS   +AW++G TG+PI+DA MRQL   GW
Sbjct: 289 YHLLFHFPRLASAN----WNDRFDGLEWCNDSDDFEAWRRGMTGYPIVDAGMRQLWRHGW 344

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RMI ASFL+KDL++DWR GE +F   L+D D A+N   WQW A +G D+ P+FRI
Sbjct: 345 MHNRVRMIVASFLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRI 404

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVD 462
           FNP +QG++FDP G +++ ++PEL  +  +YIH    AP S LD+  ++L   YP PIVD
Sbjct: 405 FNPVLQGEKFDPNGDYVKTYVPELRELGAKYIHRPFEAPKSMLDEAGITLGQTYPRPIVD 464

Query: 463 HKKACHHTLNQYYAAKKQS 481
           H  A +  L  Y A +  +
Sbjct: 465 HASARNRALAAYSATRDAA 483


>gi|329904543|ref|ZP_08273850.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547937|gb|EGF32686.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 504

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 259/493 (52%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ D  AL+ A   S   V  VFI   +  +      R+  F++ASL ++ +
Sbjct: 15  LIWFRRDLRVFDQAALHHALRQSRT-VFCVFIFDSDILQHLPEQDRRIEFLHASLTELHE 73

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129
            L + G             ++E + +   +  V  +F N  YE   + RD  +   LQ H
Sbjct: 74  ELVKLGGALIVRHAR----AVEAIPALARELDVEAVFINHDYEPQAIARDAAIATALQQH 129

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLT 185
            +   S  D V+     +L+ A + + V+TP++ A ++ L        +R+ PV  +   
Sbjct: 130 DIALHSSKDQVVFENDEVLSLAGKPFSVFTPYKNAWLKQLQFNSSDVHVRAYPVEPLADR 189

Query: 186 GPVTPSN--IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             V+P    +P   +  F   +      P G      ++  F  E++  Y + RD PAI+
Sbjct: 190 FAVSPVAHVMPTLAELGFAPTNFAQLKIPTGMSGGQQLVDNFM-ERIDKYKQTRDFPAIK 248

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S LS +L  G +S R    R  E     +    SGA +WL EL+WR+FY  ++  +P 
Sbjct: 249 GPSYLSVHLRFGTVSIRHLARRACE--AARIAADASGANTWLAELVWRDFYFMILQHHPR 306

Query: 301 VCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           V  G  F P  + I+W        L QAW  G TG+P++DAAM Q+N  G+MHNRLRM+T
Sbjct: 307 VVHGA-FKPDYDAIQWETGPAADALFQAWCDGRTGYPLVDAAMAQINQTGYMHNRLRMVT 365

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           A FL+KDL +DWR GE YF  +L+D DL++NNGGWQWA+S+G D+ PYFRIFNP  Q ++
Sbjct: 366 ACFLIKDLGIDWRRGEAYFAEKLIDFDLSANNGGWQWASSSGCDAQPYFRIFNPITQSEK 425

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHKKACHH 469
           FD  G FIR +LP+L  +  + IHAP  WL           +L +NYPLP+V H  A   
Sbjct: 426 FDTDGRFIRRYLPQLAQLGNKQIHAP--WLLTKMELDHAGVELGVNYPLPVVQHDVARKQ 483

Query: 470 TLNQYYAAKKQSL 482
           TL +Y   KK ++
Sbjct: 484 TLARYAVVKKVAV 496


>gi|170691102|ref|ZP_02882268.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
 gi|170144351|gb|EDT12513.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
          Length = 493

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 189/498 (37%), Positives = 264/498 (53%), Gaps = 49/498 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE---------QWRQHGISA--RQSH 59
           LVW R DLR TD+ ALY A  + + +V  VF+             Q R  G  A  R+  
Sbjct: 9   LVWFRRDLRTTDHAALYHALKHCE-RVWCVFVFDTTILQPLIDTWQARHPGAPAQDRRVE 67

Query: 60  FIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           FI ASL ++  +L  +G   IV        + D  + +     + RV  +F N  YE   
Sbjct: 68  FILASLRELDDALRAQGGGLIVL-------YGDPADLVPKLADELRVDAVFANHDYEPAA 120

Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           + RD+ + +RL +    C +F D V+     +L    + + V+TP++ A ++ L    L+
Sbjct: 121 IERDETVRERLAEAGRACLTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQLTSFYLK 180

Query: 176 SLPVP--AIRLTG--PVTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEKVY 228
             PV   A RL    P     +P        P    +   P G   A  +L  F   ++ 
Sbjct: 181 PYPVETYANRLAALPPGLNRQLPTLEQLGFAPGNLAELDLPTGMSGAQRLLDDFVT-RIA 239

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIW 287
            Y E+RD PA +G S LS +L  G +S R    RL  E   + ++P   GA +WL+ELIW
Sbjct: 240 SYAERRDFPAARGPSYLSVHLRFGTVSIRTL-ARLAHE---ISLQPDGRGAATWLSELIW 295

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLN 344
           R+FY  +++ +P +  G  F    + + W +         AW +G TG+P+IDAAM QLN
Sbjct: 296 RDFYFMILSHHPRLASGASFKQEYDALRWEQGPAADAAFAAWCEGRTGYPLIDAAMLQLN 355

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+MHNRLRM+TASFLVKDL +DWR GE YF  QL D DLA+NNGGWQWAASTG D+ P
Sbjct: 356 RTGYMHNRLRMVTASFLVKDLGIDWRRGERYFADQLNDYDLAANNGGWQWAASTGCDAQP 415

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNY 456
           YFRIFNP  Q ++FD  G FI+ +LP+L  +P +++HAP  WL            L  +Y
Sbjct: 416 YFRIFNPITQSEKFDADGRFIKRYLPQLAKLPAKWVHAP--WLAGAQKLAAFGVVLGEDY 473

Query: 457 PLPIVDHKKACHHTLNQY 474
           P PIVDH +A   TL ++
Sbjct: 474 PQPIVDHAQARARTLARF 491


>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
 gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
          Length = 472

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 171/487 (35%), Positives = 265/487 (54%), Gaps = 40/487 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW RNDLR+ DN AL AA   S A +IA+++   E   +  + +    +++ SL  +  
Sbjct: 6   VVWFRNDLRLADNPALTAAAR-SGAPIIALYVLDDESAGEWRMGSASRWWLHHSLTALAH 64

Query: 71  SLSQKGIVFQYHQC-SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            L++ G+     +  + F      L++         +++NR YE   +RRD  ++ +L+ 
Sbjct: 65  DLARLGVTLTLRRGRAEFV-----LENIVADAGAGAVYWNRLYEPWAMRRDSEIKSQLRA 119

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R V+ +SF+ S+L  PG + N   + ++V+TPF +A +     A+    P+PA +     
Sbjct: 120 RGVMVESFNGSLLFEPGGLRNKQGEPFRVFTPFWRACLA----AEAPDAPLPAPKKLTAA 175

Query: 189 TPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            P       D+      P         +  GE  AL  L +F K++V  Y   RD  A +
Sbjct: 176 PPPASDALADWRLLPTKPDWAGGLRETWRAGEHAALERLAEFAKKRVRDYKIDRDFMARE 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S++SP+L  G +SPR+ W  + E   D      +GA ++L E+ WREF  HL+   P 
Sbjct: 236 GVSRMSPHLHFGEVSPRRIWAEITEAAGD------AGA-AYLREIGWREFCHHLLVANPQ 288

Query: 301 V---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +    + + F        W +D+  L+AW++G TG+P++DAAMR+L   G MHNR RM+ 
Sbjct: 289 MPERALDERF----RDFPWREDAAALEAWRRGQTGYPLVDAAMRELWITGNMHNRARMVA 344

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVK LL+ W+ GE +F   L+D DLA+N+GGWQW A  G D+ PYFR+FNP +QG++
Sbjct: 345 ASFLVKHLLIPWQEGERWFWDTLVDADLANNSGGWQWVAGCGADAAPYFRVFNPVLQGEK 404

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTL 471
           FDP+G ++R ++PEL  +  ++IH    AP   L    + L   YP PIVDH KA    L
Sbjct: 405 FDPEGDYLRRYVPELARLDARHIHCPWEAPEEVLRAAGVRLGETYPRPIVDHAKARDRAL 464

Query: 472 NQYYAAK 478
             + A +
Sbjct: 465 KAFEATR 471


>gi|16802631|ref|NP_464116.1| hypothetical protein lmo0588 [Listeria monocytogenes EGD-e]
 gi|224502111|ref|ZP_03670418.1| hypothetical protein LmonFR_06272 [Listeria monocytogenes FSL
           R2-561]
 gi|16409964|emb|CAC98667.1| lmo0588 [Listeria monocytogenes EGD-e]
          Length = 467

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 173/486 (35%), Positives = 256/486 (52%), Gaps = 45/486 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC   D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +  ++        F + +E     CL+Q         K+++NR        RD+  
Sbjct: 58  QEVDKTALL-----QIMFGEPVE-----CLKQLKETLPSWDKVYFNRDETGYGAERDEAA 107

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +     + I  ++F DS L     +     + YK++TP+ K       + +++  P    
Sbjct: 108 KTFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVT 162

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +   N+   ++  F  +    PI   GE+ A   L  F K  V  Y + RD P +
Sbjct: 163 LKADNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPEL 222

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS YL  G +S R  W  L+E       +   G   +  EL WR+FY  +   +P
Sbjct: 223 DKTSHLSRYLRTGEISVRTIWQALQEN------EATEGRAIFEKELCWRDFYNMIYVSFP 276

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +    +P       IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRM+TAS
Sbjct: 277 NQ-KNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTAS 335

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSL----NYPLPIVDHKKACHHTLNQ 473
           P G FIR ++ EL N+P ++IH P   S +++ +  L    +YP P++DHK+     + +
Sbjct: 396 PTGKFIRKYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIAR 455

Query: 474 YYAAKK 479
           Y  +K+
Sbjct: 456 YEFSKE 461


>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
 gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
          Length = 476

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 169/471 (35%), Positives = 263/471 (55%), Gaps = 26/471 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ + W R DLR++DN  L  A   S +K++ +F   P   ++  I+  + +++   L  
Sbjct: 3   NIIIFWHRRDLRLSDNIGLSKAYQKS-SKLVGLFCLDPNILQRDDIAPARVNYMLGCLRN 61

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +Q+S  + G   ++FQ        +  + L   C+        +N   E     RDK ++
Sbjct: 62  LQESYQKLGGQLLIFQGQPTKIIPEVAKSLKVNCV-------IWNNDVEPYSKERDKQVK 114

Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQM-YKVYTPFRKALIQ----NLVQA--DLRS 176
           + LQ + +  +++ D +L  PG IL  +    YKVYTPF ++ ++    N+ ++   L S
Sbjct: 115 EALQEKGITSETYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEDKANIAESIEKLDS 174

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235
           L    I     +   ++P   D  +    P+   +GE  A   L  FC   +Y Y EQR+
Sbjct: 175 LSDEEINTVKNIGLIDLPTAKDLGYGWDIPLLLELGETAAKEQLHYFCNSTIYSYQEQRN 234

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHL 294
            PAI GTS+LSP    GV+  R+ W    E + +    + +    +W  E+ WREFY+H 
Sbjct: 235 FPAIDGTSKLSPAFKFGVIGIREVWQTTIEAYENTRSDEARENIQTWQQEIAWREFYQHC 294

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           + F+P +  G P+    +   W+ +    QAW +G TG+PI+DAAMRQLN  GWMHNR R
Sbjct: 295 LYFFPELAEG-PYREEFQDFPWDNNEDHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCR 353

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q
Sbjct: 354 MIVASFLTKDLMINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQ 412

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHK 464
            +++DP G +IR W+PE++++ T+Y +      L+ +  S  YP PIVDHK
Sbjct: 413 AQKYDPDGEYIRLWVPEISSLDTEYLVTGKIPPLEAH--SCGYPQPIVDHK 461


>gi|326315673|ref|YP_004233345.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323372509|gb|ADX44778.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 495

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 185/508 (36%), Positives = 269/508 (52%), Gaps = 43/508 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M      S  LVW R DLR  D+ ALY A      +V  VF+   +       + R+  F
Sbjct: 1   MIMVPTFSKGLVWFRRDLRSDDHAALYHALRQC-GQVHCVFVFDTDILDPLPRADRRVEF 59

Query: 61  IYASLLQVQKSLS------QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           I  SL+Q+  SL         G++ ++   +      E + +  ++  V  LF N   E 
Sbjct: 60  IRESLVQLDASLRDLSGHRHGGLIVRHGVAA------EEVPALAVRLGVQALFANHDDEP 113

Query: 115 NEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
             + RD  +  RL    V   ++ D  +     +L      Y V+TP++ A ++ +    
Sbjct: 114 AALERDDRVRHRLGAGGVQMLTYKDHTVFERAEVLTQGGTPYTVFTPYKNAWLRKVDAFY 173

Query: 174 LRSLPVPAIRLTGPVTP------SNIPRFFDYPFQ--AIDPM-FPIGEQNALHILRKFCK 224
           L + PV   R  G + P       ++P   D  F+   +D +  P G + A  +L  F  
Sbjct: 174 LSAYPVE--RHAGRLAPRPEGARGSVPALADIGFEPAGLDRLPLPPGMEGARTLLDDFL- 230

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           +++  Y E RD PA++G S LS +L  G LSPR+      E     + +  +GA +WL+E
Sbjct: 231 QRIDQYGEARDFPAVKGPSYLSVHLRFGTLSPRRAARAAHER----MRQGSTGAATWLSE 286

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMR 341
           LIWR+FY  ++A +P V  G  F P  + I W       +   AW +G TG+P++DAAM 
Sbjct: 287 LIWRDFYFQVLAHHPQVAGGASFKPAYDAIPWEDGPQAQERFAAWCEGRTGYPLVDAAMA 346

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           Q+N  G+MHNRLRM+ ASFLVKDL VDWR GE YF  +L D DL++NNGGWQWA+S+G D
Sbjct: 347 QINQTGYMHNRLRMVVASFLVKDLGVDWRRGERYFAEKLNDFDLSANNGGWQWASSSGCD 406

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL- 454
           + PYFRIFNP  Q ++FDP+G FIR +LP+L  +P +++HAP  W      L+   + L 
Sbjct: 407 AQPYFRIFNPVSQSRKFDPKGRFIRLYLPQLAALPDRWLHAP--WEAGPLELEAAGVRLG 464

Query: 455 -NYPLPIVDHKKACHHTLNQYYAAKKQS 481
            NYP PIVDH +A   TL +Y   K ++
Sbjct: 465 DNYPHPIVDHDEARQKTLARYAVVKSEA 492


>gi|257095136|ref|YP_003168777.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047660|gb|ACV36848.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 482

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 182/494 (36%), Positives = 254/494 (51%), Gaps = 31/494 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASL 65
           M   LVW R DLR +D+ AL  A      +V   F+   E        A R+  FI  SL
Sbjct: 1   MDSILVWFRRDLRDSDHAALCEALRRG-RRVFCAFVFDREILDALDHEADRRVEFIRESL 59

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           +++  +L  +G   +V          D    L        V  +F NR YE    +RD  
Sbjct: 60  VELDAALRTRGGALLVRHGWATREIPDLARGLG-------VAAVFVNRDYEPGAKQRDAA 112

Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +   L+   I  +SF D  +L    +L+ A + Y V+TP+R A ++ L   D       +
Sbjct: 113 VSAALKADGIAFESFKDQAILDGDEVLSQAGRPYTVFTPYRNAWLKRLTDDDWYPHQAGS 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             L        +P      F   D     + P G +    +L  F   ++  Y +QRD P
Sbjct: 173 GVLAATPAADGVPPLAKIGFSGTDLRRLGIVP-GMRGGRQLLADFLG-RIGRYRQQRDFP 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S R      K        +   GA +WL+EL+WR+FY  ++  
Sbjct: 231 AVKGVSYLSVHLRFGTVSVRDLVA--KAIAAGAFREGGEGAATWLSELVWRDFYFMILDR 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +P V   + F P  + I W   +       AW  G TG+P++DAAMRQLN+ G+MHNRLR
Sbjct: 289 FPHVVE-RAFKPAYDLINWQAGAQAEDAFSAWCAGRTGYPLVDAAMRQLNSSGYMHNRLR 347

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL KDL +DWR+GE YF  QL D DL++NNGGWQWAASTG D+ PYFRIFNP  Q
Sbjct: 348 MLVASFLTKDLGIDWRLGERYFARQLNDYDLSANNGGWQWAASTGCDAQPYFRIFNPVTQ 407

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSL----NYPLPIVDHKKACH 468
            +RFDP G FIR +LPEL NVP ++IHAP   S ++++   +      P P+VDH +A  
Sbjct: 408 SERFDPAGKFIRRYLPELANVPDRFIHAPWRMSSVEQSACGVLIGRTTPAPLVDHDQARQ 467

Query: 469 HTLNQYYAAKKQSL 482
            TL +Y   K  ++
Sbjct: 468 RTLERYAIVKSPAV 481


>gi|315301776|ref|ZP_07872823.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596]
 gi|313629850|gb|EFR97936.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596]
          Length = 471

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 178/481 (37%), Positives = 260/481 (54%), Gaps = 33/481 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR++DN ALY AC ++D ++I +F   PEQ+    I+   SH  + S +   K
Sbjct: 4   VMWFRRDLRLSDNTALYQACKDND-ELILLFQVNPEQF----ITKSPSHQAFFSSVAYFK 58

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKL-LEKR 126
               K    Q      F + I  L+   L+++V    K+++NR       +RD+  L   
Sbjct: 59  QQVDKIAHLQIM----FGEPINLLEK--LKEKVPSWDKVYFNRDETGYGAKRDETALRFF 112

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            Q  +   +FDD+ L    ++     + YK++TP+ K   + + +  ++    PA     
Sbjct: 113 AQAGMTVFAFDDAYLHHADAVKKSTSEFYKIFTPYYKKWREEIKEFPIQVTVNPAKIQKA 172

Query: 187 PVTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            + P +  +F     QA+ PM     +GE  A + L  F KE +  Y E RD P +  TS
Sbjct: 173 ILFPEDEEQFVQMA-QAL-PMLAENMLGETVANNQLNHFVKENLAQYKEVRDFPDLDKTS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS +L  G LS R  W  +++       +P  G  ++  EL WR+FY  +   +P+   
Sbjct: 231 HLSRFLRTGELSIRTVWQAVQK------AEPTDGRTTFEKELCWRDFYNMIYVSFPN-QK 283

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +        IEW  + +  Q W+QG TG+P++DAAMRQL   GWMHNRLRMITASFL K
Sbjct: 284 NEAIQTNYRFIEWENNRNYFQKWQQGATGYPLVDAAMRQLKETGWMHNRLRMITASFLTK 343

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD  G 
Sbjct: 344 DLLIDWRWGEKYFQQMLVDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDSLGN 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477
           FIR ++ EL N+P ++IH P     K        L  +YP PI++H++     + +Y  +
Sbjct: 404 FIRKYVQELANLPDKFIHQPEKMTAKEQTEFKVILGEDYPFPIINHQERRKEAIARYEFS 463

Query: 478 K 478
           K
Sbjct: 464 K 464


>gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
           12472]
 gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
           12472]
          Length = 471

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 179/471 (38%), Positives = 251/471 (53%), Gaps = 39/471 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR+ D+ A Y A  +S+A V+ VF+             R+  FI+ S   ++ 
Sbjct: 9   LVWLRRDLRLDDHAAFYHALKHSEA-VLPVFVFDASILAALPRDDRRVDFIWQSAAALKA 67

Query: 71  SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            L+Q  G +   H     +     +     +     +F NR YE     RD  + +RL +
Sbjct: 68  ELNQLGGDLLIRHGLPQHE-----IPRLAAELGAEAVFCNRDYEPAARARDAEVAQRLAE 122

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTGP 187
             V  +   D V+     +L  A + + V+TP++ A ++ L    L++ PV   +    P
Sbjct: 123 QGVAFRDSKDQVIFETDEVLTGAGKPFSVFTPYKNAWLKKLTPFHLQAYPVRRYLDALMP 182

Query: 188 VTPSNIPRFFDYPFQAID-PMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             P ++P   D  F   D    P+  G   A  +   F   ++  Y  QRD P ++G S 
Sbjct: 183 REPQSMPSLADIGFLPSDLASLPVKAGAAGAEALFADFAG-RIERYKAQRDFPGVKGVSY 241

Query: 245 LSPYLSIGVLSPRQ----CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LS +L  G LS R+     W+   E           GA +WL+ELIWR+FY+ ++   P 
Sbjct: 242 LSVHLRFGTLSIRRLAAYAWHDGGE-----------GAMTWLSELIWRDFYQQVLWHRPD 290

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 F P  + + +  D     AW++G TG+P++DAAMRQLN  G+MHNRLRM+ ASF
Sbjct: 291 AAK-HAFKPEYDALPFPNDPEWFDAWREGRTGYPLVDAAMRQLNRSGYMHNRLRMVAASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDLL+DWR GE+YF  +LLD DLA+NNGGWQWAASTG D+ PYFRIFNP  Q ++FDP
Sbjct: 350 LVKDLLIDWRWGEQYFAEKLLDFDLAANNGGWQWAASTGCDAQPYFRIFNPVSQSEKFDP 409

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDH 463
            G FIR ++PEL  +P + IHAP  W  K +        L  +YP PIVDH
Sbjct: 410 DGRFIRRYVPELAALPDKLIHAP--WQAKPEQLMSAGVRLGRDYPHPIVDH 458


>gi|116617921|ref|YP_818292.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096768|gb|ABJ61919.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 470

 Score =  289 bits (739), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 184/490 (37%), Positives = 258/490 (52%), Gaps = 44/490 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLR+ DN AL+ A  +S+ +++ VF   PEQ  +   +  QS F +AS+L  
Sbjct: 2   VSVMWFRRDLRLEDNIALFNALRHSN-EILCVFHINPEQVTEKS-TVNQSAF-FASVLYF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK---LFYNRQYEINEVRRDK---- 121
           +  L ++GI        + +D         L+Q++     +F+N         RD+    
Sbjct: 59  KNKLKKQGINLNI-MYGDINDCFA-----SLKQKLPDWHDIFFNFDERGFGRNRDQKSVA 112

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL---P 178
             E +L  +V    + D  L     +   +   YKV+TP+ K  I+    A +  +    
Sbjct: 113 FFEDKL--KVKAHPYIDYNLHGATEVKKDSGAGYKVFTPYFKRWIRQEKPAPVSYVIDKR 170

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           + + RL  P     +  F D  F  I     +G + A  +L +F  E +  Y E+RD PA
Sbjct: 171 IKSARLLFPENEQLLETFIDDRFSFIKK--DLGSETAKKVLNRFINESLDQYDEERDFPA 228

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAF 297
              TS LS YL  G +S R  W  + +        P S G  +++ EL WR+FY  +   
Sbjct: 229 NDSTSHLSRYLRTGEISIRTVWRAIDQS-------PDSDGKSTFMKELCWRDFYNMIYVM 281

Query: 298 YPS---VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           YP+     + K F      ++W  +    +AW+ G TGFPI+DAAMRQLN  GWMHNRLR
Sbjct: 282 YPNQNVESVNKDF----RHVDWINNEQQFEAWRTGQTGFPIVDAAMRQLNATGWMHNRLR 337

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL KDLL+DWR GE YF ++LLD D ASN GGWQWAASTG DSVPYFRIFNPT+Q
Sbjct: 338 MIVASFLTKDLLIDWRWGEAYFHNKLLDYDAASNIGGWQWAASTGTDSVPYFRIFNPTLQ 397

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACH 468
            K+FD  G FI+ ++PEL NV  + IH P    +         +  NYP PIVDH  A  
Sbjct: 398 SKKFDSNGLFIKKYVPELKNVDNKMIHEPGKLSESEQTRFNVRIGQNYPFPIVDHSYARK 457

Query: 469 HTLNQYYAAK 478
             ++ Y ++K
Sbjct: 458 RAISIYESSK 467


>gi|120609600|ref|YP_969278.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli
           AAC00-1]
 gi|120588064|gb|ABM31504.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli
           AAC00-1]
          Length = 493

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 183/502 (36%), Positives = 265/502 (52%), Gaps = 43/502 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            S  LVW R DLR  D+ ALY A      +V  VF+           + R+  FI  SL+
Sbjct: 5   FSKGLVWFRRDLRSDDHAALYHALRQC-GQVHCVFVFDTAILDPLPRADRRVEFIRESLV 63

Query: 67  QVQKSLS------QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           Q+  SL         G++ ++   +      E + +   +  V  +F N   E   + RD
Sbjct: 64  QLDASLRALSGHRHGGLIVRHGVAA------EEVPALAARLGVQAVFANHDDEPVALERD 117

Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             + +RL    V   ++ D  +     +L      Y V+TP++ A ++ +    L + PV
Sbjct: 118 DRVRRRLGTGGVQMLTYKDHAIFERAEVLTQGGTPYTVFTPYKNAWLRKVDAFYLSAYPV 177

Query: 180 PAIRLTGPVTP------SNIPRFFDYPFQ--AIDPM-FPIGEQNALHILRKFCKEKVYYY 230
              R  G + P        +P   D  F+   +D +  P G   A  +L  F  +++  Y
Sbjct: 178 E--RHAGRLAPRPEGERGGVPALADIGFEPAGLDRLPLPPGMDGARALLDDFL-QRIDQY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            E RD PA++G S LS +L  G LSPR+      E     + +  +GA +WLNELIWR+F
Sbjct: 235 GEARDFPAVKGPSYLSVHLRFGTLSPRRAARAAHER----MRQGSTGAATWLNELIWRDF 290

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIG 347
           Y  ++A +P V  G  F P  + I W       +   AW +G TG+P++DAAM Q+N  G
Sbjct: 291 YFQVLAHHPQVAGGASFKPAYDAIAWEDGPQARERFAAWCEGRTGYPLVDAAMAQINRTG 350

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+ ASFLVKDL VDWR GE YF  +L D DL++NNGGWQWA+S+G D+ PYFR
Sbjct: 351 YMHNRLRMVVASFLVKDLGVDWRWGERYFAEKLNDFDLSANNGGWQWASSSGCDAQPYFR 410

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLP 459
           IFNP  Q ++FDP+G FIR +LP+L  +P +++HAP  W      L+   + L  NYP P
Sbjct: 411 IFNPVSQSRKFDPKGRFIRLYLPQLAALPDRWLHAP--WEAGPLELEAAGVRLGDNYPHP 468

Query: 460 IVDHKKACHHTLNQYYAAKKQS 481
           +VDH +A   TL +Y   K ++
Sbjct: 469 VVDHDEARQRTLARYAVVKSEA 490


>gi|221065219|ref|ZP_03541324.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
 gi|220710242|gb|EED65610.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
          Length = 496

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 190/502 (37%), Positives = 266/502 (52%), Gaps = 31/502 (6%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           T +  V L+WLR DLR+ DN ALY A    + K+  VF+           + R+  FI  
Sbjct: 2   TPSYPVGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILAALPRADRRVEFICQ 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL ++  +L +     Q    +      + + +   Q     +F N   E   + RD  +
Sbjct: 61  SLAELDAALRETTGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAALARDAQV 120

Query: 124 EKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-- 180
            + L+ +  +   F D  +     +L  +L  + V+TP++ A ++ +    L + P    
Sbjct: 121 ARSLKSQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERD 180

Query: 181 -AIRLTG-PVTPS-NIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQ 233
            A +L   P T    IP   D  F A D +     P G   A  +L  F   ++  Y   
Sbjct: 181 LASKLADLPDTERRTIPSAADLGF-APDTLAGLRLPTGVSGARRLLADFLP-RLPQYKAA 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV---DLLIKPKSGAFSWLNELIWREF 290
           RD PA++G S LS +L  G +S R+   RL  E     D     + GA +WL+ELIWR+F
Sbjct: 239 RDFPALKGPSYLSVHLRFGTVSIREL-ARLAHEAAHHEDWSAAAREGAATWLSELIWRDF 297

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIG 347
           Y  ++A  P V + + F P  + IEW   +    L  AW +G TG+P++DAAMRQLNT G
Sbjct: 298 YFQILAHQPYV-VERSFKPAYDAIEWETGAEADALFAAWCEGRTGYPLVDAAMRQLNTSG 356

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+TASFLVKDL +DWR GE YF  +L D DLA+NNGGWQWAASTG D+ P+FR
Sbjct: 357 YMHNRLRMVTASFLVKDLGLDWRRGEAYFGEKLNDFDLAANNGGWQWAASTGCDAQPWFR 416

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLP 459
           IFNP  Q ++FDP+G FI  ++PEL  +P +  HAP  WL K          L  +YPLP
Sbjct: 417 IFNPVTQSEKFDPEGKFIVRYVPELTPLPAKLRHAP--WLAKPLELAEAGIALGRDYPLP 474

Query: 460 IVDHKKACHHTLNQYYAAKKQS 481
           +VDH  A   TL +Y   KK+S
Sbjct: 475 VVDHAAAREKTLARYGILKKES 496


>gi|257877829|ref|ZP_05657482.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC20]
 gi|257811995|gb|EEV40815.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC20]
          Length = 473

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 175/491 (35%), Positives = 261/491 (53%), Gaps = 46/491 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M++H++W R DLR+ DN AL  A  +   +  ++ VF    +Q+     S     + +++
Sbjct: 1   MAIHVMWFRKDLRLEDNTALTEALVSLQENDHLLCVFHLNDKQFLPEAPS---HDYFFSA 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +    K+  ++ +           ++ + L  +      ++L++N        +RD  ++
Sbjct: 58  VAHFIKAAKKQNLTIHL-LTGTLTEAFDQL--FACYPEWSQLYFNFDNRGFGRKRDLYIK 114

Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + ++ + +   SF+D  L  P  +       YK +TP+ K  IQ         LP P  +
Sbjct: 115 ELVEKKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQ---------LPKPVYQ 165

Query: 184 LTGPVTPSNIPRFFDYP-FQAIDPMFP-------------IGEQNALHILRKFCKEKVYY 229
                   ++  F D P F+A   +               +GE  A   L+ F ++++  
Sbjct: 166 KQALDFEKSV-HFDDAPHFKAGTALLAKLLENRKTDFSTIVGEDYAHKQLQAFVQKRLAA 224

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RDIP+I+GTS+LSP+LS G +S R+ W   +       +   +G  ++L EL WR+
Sbjct: 225 YEKDRDIPSIKGTSRLSPFLSFGQISIRKVWAACQG------MPSSTGKATFLKELAWRD 278

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FY H++ F          I     ++W K+   L  W+ G TG+PIIDAAMRQLN  GWM
Sbjct: 279 FY-HMIYFSHPEQKNYELIEKYRNMDWRKNEEELTKWQAGQTGYPIIDAAMRQLNQTGWM 337

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRMI ASFL KDLL+DWR GE YF  QL+D D ASN GGWQWAASTG D+VPYFRIF
Sbjct: 338 HNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIF 397

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463
           NP  QGK+FD  GTFI+ ++PEL  +P ++IH P+   D+        L  +YPLPIVDH
Sbjct: 398 NPITQGKKFDKDGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDH 457

Query: 464 KKACHHTLNQY 474
            +A    L+ Y
Sbjct: 458 NEARKRALDLY 468


>gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
 gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
          Length = 477

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 173/469 (36%), Positives = 245/469 (52%), Gaps = 29/469 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN AL  A   S AKV+ +F   P    +  ++  +  ++ A L ++ +
Sbjct: 6   LHWHRRDLRLQDNVALAEARQQS-AKVVGIFCLDPAILEKEDVAPARVKYLLACLAELAE 64

Query: 71  SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  + G   ++FQ        + +E L       +V  +++N   E    +RD  +   L
Sbjct: 65  NYQKAGSQLLIFQ-------GNPLEVLPKVAESLKVHTVYWNLDVEPYAQQRDHQMAIAL 117

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLRSLPVP 180
            Q     ++F D +L  PG +   + + Y VY+PF K   Q    A      D + L   
Sbjct: 118 RQVGAKIETFWDQLLHAPGKVFTQSKKPYSVYSPFWKNWSQKSKAAPVTALRDCQGLSDA 177

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             +L   +    +P   D  F    P   P+GE  +L  L +F +  +  Y   R+ PA 
Sbjct: 178 EQKLAKDLGAIALPTLADLGFSWDKPFTVPVGETASLGQLDRFTENFIEKYDGDRNFPAT 237

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFY 298
            GTS+LS  L  G +  R  W   +        K  ++G  +W  EL WREFY+H + F+
Sbjct: 238 DGTSRLSAALKFGAIGIRTVWQATETALNHCRSKEAEAGVITWQQELAWREFYQHCLFFF 297

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +  G P+    +   W  D    QAW  G TG+PIIDAAMRQLN  GWMHNR RMI A
Sbjct: 298 PELAQG-PYREEFKDFPWENDEEKFQAWCAGQTGYPIIDAAMRQLNETGWMHNRCRMIVA 356

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDL++DWR GE+YFM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++F
Sbjct: 357 SFLTKDLIIDWRWGEKYFMQTLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQAQKF 415

Query: 419 DPQGTFIRHWLPELNNVPTQYI---HAPHSWLDKNDLSLNYPLPIVDHK 464
           DP+  +IRHWLPEL+ + TQ +     P     ++D    YP PIV+H+
Sbjct: 416 DPEADYIRHWLPELSGLDTQVLLTGQIPRLLCQQHD----YPEPIVEHR 460


>gi|319795849|ref|YP_004157489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS]
 gi|315598312|gb|ADU39378.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS]
          Length = 499

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 179/494 (36%), Positives = 266/494 (53%), Gaps = 34/494 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ DN ALY A      +V+ VF+           + R+  FI  SLL++Q 
Sbjct: 16  LMWFRRDLRVDDNAALYRALRAC-RQVVCVFVFDKAILDPLPSADRRVEFIRESLLELQA 74

Query: 71  SLS--QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRL 127
            L     G++ ++        +++ + +      V  +F NR  E + + RD K+L    
Sbjct: 75  ELGALSGGLIVRHSH------AVQEIPALASDLGVQAVFANRDDEPDALERDAKVLGALA 128

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AIRLT 185
              +   ++ DS +     +L    Q Y V+TP+++A +  +    L+  PV   A  L 
Sbjct: 129 NAGIAFHTYKDSTVFDRDEVLTKTGQPYTVFTPYKRAWLAKVDSFFLKPYPVRGHADALV 188

Query: 186 GP--VTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            P       +P   +  F+  +      P G   A  +   F  E++  Y E R+ PA++
Sbjct: 189 PPPQAYREPMPSLGELGFEKTNLSALEIPTGSLGAGVLFEDFF-ERIDRYDEARNFPAVR 247

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S +  +L  G +S RQ  +   +    L ++  +GA +WL+ELIWR+FY  ++  +P 
Sbjct: 248 GPSYMGVHLRFGTVSIRQVASVAHQ----LSLQGNAGAATWLSELIWRDFYFQILTHFPH 303

Query: 301 V---CMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           V      K F P  +KI+W+   H   LL AW +G TG+P++DAAM Q+N  G+MHNRLR
Sbjct: 304 VHKDGESKSFRPEYDKIQWHHGKHADQLLDAWCEGRTGYPLVDAAMLQINQSGYMHNRLR 363

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL KDL +DWR GE YF   L D +LASNNGGWQWA+S+G D+ PYFRIFNP  Q
Sbjct: 364 MVVASFLCKDLGLDWRRGERYFALHLNDFELASNNGGWQWASSSGCDAQPYFRIFNPVTQ 423

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKACH 468
            +RFDP+G FIR +LP+L  +    IHAP +     L+   + L   YPLP+VDH +A  
Sbjct: 424 SERFDPEGKFIRRYLPQLARLSNAAIHAPWTASPVELEAAGIKLGETYPLPVVDHAEARE 483

Query: 469 HTLNQYYAAKKQSL 482
            TL +Y  A+ ++L
Sbjct: 484 KTLQRYGVARAKAL 497


>gi|91777293|ref|YP_552501.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
           LB400]
 gi|91689953|gb|ABE33151.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
           LB400]
          Length = 499

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 185/504 (36%), Positives = 266/504 (52%), Gaps = 61/504 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISA----RQSH 59
           LVWLR DLR TDN ALY A  + + +V  VF+          + W           R+  
Sbjct: 15  LVWLRRDLRNTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDAWHARHPDTQPQDRRIE 73

Query: 60  FIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           FI A+L ++ ++L   G   IV        + +  E +     +  V  +F N  YE   
Sbjct: 74  FILAALGELDEALRADGGGLIVL-------YGNPAELVPKLADELGVDAVFANHDYEPVA 126

Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           + RD  + +RL +      +F D V+     +L    + + V+TP+R A ++ L   DL+
Sbjct: 127 IERDGTVRERLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSAFDLK 186

Query: 176 SLPVP--AIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKF 222
             PV   A RL        +P  FD     ++ +            P G   A  +L  F
Sbjct: 187 PYPVETYAKRLAA------LPSKFDRQLPTLEQLGFAPSNLGELNLPAGMSGAQRLLDDF 240

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSW 281
              ++  Y ++RD PA +G S LS +L  G +S R    RL  E   + ++P   G+ +W
Sbjct: 241 MT-RIDSYADRRDFPAAKGPSYLSIHLRFGTVSIRTL-ARLAHE---MSLQPDGQGSATW 295

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDA 338
           L+ELIWR+FY  ++A +P +  G  F    +++ W +         AW  G TG+P++DA
Sbjct: 296 LSELIWRDFYFMILAHHPRLARGASFREEYDRLRWEQGLQADEAFAAWCNGRTGYPLVDA 355

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           AM QLN  G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D ++NNGGWQWAAST
Sbjct: 356 AMLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAAST 415

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------- 451
           G D+ PYFRIFNP  Q ++FD +G FI+ +LP+L  +P+++IHAP  WL   +       
Sbjct: 416 GCDAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAP--WLAGAERLADCGV 473

Query: 452 -LSLNYPLPIVDHKKACHHTLNQY 474
            L  +YP PIVDH +A   TL ++
Sbjct: 474 VLGKDYPAPIVDHAEARARTLARF 497


>gi|330825562|ref|YP_004388865.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
           K601]
 gi|329310934|gb|AEB85349.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
           K601]
          Length = 487

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 182/489 (37%), Positives = 258/489 (52%), Gaps = 35/489 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  LVWLR DLR  D+ ALY A         A    T           R+  FI+ASLL+
Sbjct: 3   STALVWLRRDLRCDDHAALYHALRRYPRVYCAFVFDTGILDELPSRQDRRVEFIHASLLE 62

Query: 68  VQKSLSQ---------KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           + + L Q          G++ ++        ++E +     +  V ++  NR YE   + 
Sbjct: 63  LHQGLQQLAARSGAPGGGLIVRH------GPALECIVQLAQELGVQEVLANRDYEPQAIA 116

Query: 119 RDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD+ + + L    I  S + D VLL    +L    + Y V+TP+++A +Q L    L+  
Sbjct: 117 RDQSVAQALHALGIAFSDYKDQVLLDRDEVLTQQGRPYSVFTPYKRAWLQRLDDFQLKPY 176

Query: 178 PVP--AIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYV 231
           PV   A  L  P     +P   D  F   +    P+ P G   A  +L+ F   ++  Y 
Sbjct: 177 PVDRYAHHLAPPPADERLPTLSDLSFGPTNLRELPL-PSGMSGAQRLLQDFVP-RMAAYQ 234

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E RD P  +G S LS +L  G +S RQ      ++  +       GA +WL+EL WR+FY
Sbjct: 235 EARDYPGRKGVSYLSVHLRFGTVSIRQLAALAAKQAAEGC----GGAQTWLSELAWRDFY 290

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             ++  +P V   + F P  ++++W++   L QAW +  TG+P++DAAM QL   G+MHN
Sbjct: 291 FMILWHHPQVVT-QSFKPEYDRVQWDEAPELWQAWCEARTGYPLVDAAMHQLLQTGYMHN 349

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRM+ ASFL KDL +DWR GE +F   L D DLA+NNGGWQWAASTG D+ PYFRIFNP
Sbjct: 350 RLRMVVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPYFRIFNP 409

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKK 465
             Q +RFDP GTFIR +LPEL  VP  +IH P +            L ++YP+P+VDH +
Sbjct: 410 ITQSQRFDPDGTFIRRYLPELVGVPDAHIHFPAAMKPAALAACGLRLGVDYPVPVVDHAR 469

Query: 466 ACHHTLNQY 474
           A   TL ++
Sbjct: 470 ARQRTLMRF 478


>gi|171463059|ref|YP_001797172.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192597|gb|ACB43558.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 490

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 180/498 (36%), Positives = 260/498 (52%), Gaps = 35/498 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--------QWRQHGIS-ARQ 57
           M   LVWLR DLR+ DN AL+ A   S  +V   FI   E        +   +G+   R+
Sbjct: 1   MQKALVWLRRDLRLYDNSALHHALKES-RQVWLAFIFDTEILKPLLRGKLDANGLKHDRR 59

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI+  + Q+   L  +G          F +  E +     +  V  +F N  YE + +
Sbjct: 60  VDFIWQGIKQIDDQLRAQGGGL----IVRFSNPTECIPQLASELGVNAVFANHDYEPSAI 115

Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+++  +L+   I   +F D V+     IL ++  ++ ++TP++    + L + DL +
Sbjct: 116 ERDEVVTAKLEKEGIEFLTFKDQVIFEKKEILTNSNTVFSIFTPYKNNWFKTLQEKDLAA 175

Query: 177 L---PVPAIRLTGPVTPSN-IPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYY 230
               P P      P   S  +P      F    I+   P G +     L  F   ++  Y
Sbjct: 176 YECNPKPGQLAAIPKKISKPLPSLESMGFCPTGIESYLPPGSEGGQAFLEDFLT-RIDQY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              RD PAI+G S LS +L  G+LS R     L  E    ++    GA  WL+ELIWR+F
Sbjct: 235 QISRDFPAIKGVSYLSTHLRFGMLSIRG----LVREAHRRMLAGSMGATIWLSELIWRDF 290

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           Y  ++A +P +  G  F P  + I W   +    L  AW +G TG+P++DAAM QLN  G
Sbjct: 291 YFMILANHPRLAKGASFKPDYDNIVWESGATAKKLFTAWCEGKTGYPLVDAAMHQLNQSG 350

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+ ASFL KDL +DWR GE YF   L D +L+SNNGGWQW +S+G D+ PYFR
Sbjct: 351 YMHNRLRMVVASFLTKDLGIDWRWGEAYFAEHLNDFELSSNNGGWQWVSSSGCDAQPYFR 410

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSL--NYPLPIV 461
           IFNP  Q ++FDP+G FI+ +LP+L  +  + +H P    H  L+   +SL  +YPLP+V
Sbjct: 411 IFNPITQSEKFDPEGKFIKRYLPQLEKLSKKSVHTPWKAGHIELEAAGISLDKDYPLPVV 470

Query: 462 DHKKACHHTLNQYYAAKK 479
           DH +A   TL +Y   KK
Sbjct: 471 DHDEARKKTLVRYSVVKK 488


>gi|264680117|ref|YP_003280026.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
 gi|262210632|gb|ACY34730.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
          Length = 512

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 188/502 (37%), Positives = 265/502 (52%), Gaps = 31/502 (6%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           T +  V L+WLR DLR+ DN ALY A    + K+  VF+           + R+  FI  
Sbjct: 18  TPSYPVGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILAALPRADRRVEFICQ 76

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL ++  +L +     Q    +      + + +   Q     +F N   E   + RD  +
Sbjct: 77  SLTELAAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDAQV 136

Query: 124 EKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-- 180
            + L+ +  +   F D  +     +L  +L  + V+TP++ A ++ +    L + P    
Sbjct: 137 ARSLKSQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERD 196

Query: 181 -AIRLTG-PVTPSN-IPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQ 233
            A +L   P T    IP   D  F A D +     P G   A  +L  F   ++  Y   
Sbjct: 197 LASKLADLPDTERRPIPSAADLGF-APDTLAGLRLPTGVSGARQLLADFLP-RLPQYKTA 254

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV---DLLIKPKSGAFSWLNELIWREF 290
           RD PA++G S LS +L  G +S R+   RL  E     D     + GA +WL+ELIWR+F
Sbjct: 255 RDFPALKGPSYLSVHLRFGTVSIREL-ARLAHEAAHNEDWSAAAREGAATWLSELIWRDF 313

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIG 347
           Y  ++A  P V + + F P  + IEW   +    L  AW +G TG+P++DAAMRQLN+ G
Sbjct: 314 YFQILAHQPYV-VERSFKPAYDAIEWETGAEADTLFAAWCEGRTGYPLVDAAMRQLNSSG 372

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+TASFLVKDL +DWR GE YF  +L D DLA+NNGGWQWAASTG D+ P+FR
Sbjct: 373 YMHNRLRMVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFR 432

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLP 459
           IFNP  Q ++FDP G FI  ++PEL  +P +  HAP  WL K          L  +YPLP
Sbjct: 433 IFNPVTQSEKFDPDGKFIVRYVPELTPLPAKLRHAP--WLAKPLELAEAGITLGRDYPLP 490

Query: 460 IVDHKKACHHTLNQYYAAKKQS 481
           +VDH  A   TL +Y   KK++
Sbjct: 491 VVDHAAAREKTLARYGILKKEA 512


>gi|332711249|ref|ZP_08431182.1| deoxyribodipyrimidine photo-lyase type I [Lyngbya majuscula 3L]
 gi|332350063|gb|EGJ29670.1| deoxyribodipyrimidine photo-lyase type I [Lyngbya majuscula 3L]
          Length = 474

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 249/470 (52%), Gaps = 29/470 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S  K++ VF   P    +  I+  +  ++   L Q+Q+
Sbjct: 6   LFWHRRDLRISDNVGLAAAFELS-PKLVGVFCLDPTILERDDIAPARVTYMIGCLEQLQQ 64

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
              Q G  +   HQ     D  + + +         + +N   E     RD+ +   L+ 
Sbjct: 65  GYRQAGSQLLILHQ-----DPRQGIPNLAAALEAKAVCWNWDVEPYSKERDQDVAAGLKE 119

Query: 130 RVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + I   ++ D +L  PG I   +   Y VYTPF K       Q   ++ PV  +     +
Sbjct: 120 KGIAVYNYWDQLLHAPGEIFTKSGNPYSVYTPFWKNW-----QGQSKAEPVATLTRVESL 174

Query: 189 TP-----------SNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDI 236
           T            +++P   D  +   + +  P GE+ A  IL +FC   +  Y EQR+ 
Sbjct: 175 TEIEQDNALAAGVTDLPSAIDLGYVWENELLVPPGEKVAQEILEEFCDRTIGDYHEQRNF 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLM 295
           P + GTS+LS  L  GV+  R+ W   +  + +    + +    +W  EL WREFY+H M
Sbjct: 235 PGVDGTSKLSAALKFGVIGIRRVWQAAQNAYNLSRSDEARQSIQTWQQELAWREFYQHAM 294

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F+P +  G P+    +   W+ +    QAW +G TG+PI+DAAMRQLN  GWMHNR RM
Sbjct: 295 YFFPELAQG-PYRQKFQDFPWDNNPEFFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCRM 353

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D  P  RIFNP  Q 
Sbjct: 354 IVASFLTKDLIINWQWGEKYFMQRLSDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQA 412

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           K+FDP G +IR WLPEL++V T+Y+ +        ++   YP PIVDH +
Sbjct: 413 KKFDPDGEYIREWLPELSSVDTEYVVSGKIPESGREM-CGYPAPIVDHNQ 461


>gi|253997258|ref|YP_003049322.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8]
 gi|253983937|gb|ACT48795.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8]
          Length = 473

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 178/487 (36%), Positives = 254/487 (52%), Gaps = 41/487 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLL 66
           S  LVW R DLR  D+ ALY A   S  +V  VF+   +   Q    A R+  FI+ S+ 
Sbjct: 4   STSLVWFRRDLRDYDHAALYYALKASQ-QVYCVFVFDTDILNQLSDKADRRVEFIWESVQ 62

Query: 67  QVQKSLSQKG---IVFQ---YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +++ +L Q+G   IV      H+      +++             +F N  YE + + RD
Sbjct: 63  ELKTALQQRGSDLIVLHGSAQHEVPQLAQTLQ----------AQAVFANHDYEPSAIARD 112

Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             + ++LQ H +    + D  +     +L  A + Y V+TP++ A ++ +    L++ PV
Sbjct: 113 AQVAQQLQAHDIDFHHYKDQAIFEKDEVLTMAHKPYSVFTPYKNAWLKTVNDFYLKAYPV 172

Query: 180 PA-IRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRD 235
              +     + P  +     + FQ  +      P G   +  +   F  E++ +Y E RD
Sbjct: 173 EHYLNKLAKIQPQPLASLESFGFQRTNLSSLRLPTGMSGSATLFDDFI-ERIKHYKEARD 231

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PA++G S LS +L  G +S RQ   R   +          GA +WL+ELIWR+FY  ++
Sbjct: 232 FPAVKGVSYLSVHLRFGTISIRQL-ARTAMQIGGF------GAETWLSELIWRDFYFQIL 284

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P +  GK F    E I +   + L  AW +G TG+P++DAAMRQLNT G+MHNRLRM
Sbjct: 285 HHNPQLEAGKAFKTEFEAIAFPNSATLFTAWCEGKTGYPLVDAAMRQLNTTGFMHNRLRM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFLVKDLL+DWR GE YF   L+D D ++NNGGWQWAASTG D+ P+FRIFNP  Q 
Sbjct: 345 VAASFLVKDLLIDWRWGERYFAENLIDFDFSANNGGWQWAASTGCDAQPWFRIFNPITQS 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKAC 467
           +RFD  G FIR ++ EL     + IHAP  WL            +  NYP PIVDH    
Sbjct: 405 ERFDGHGKFIRKYVAELAQCNDKEIHAP--WLMSAQRQSSINTVIGQNYPKPIVDHATQR 462

Query: 468 HHTLNQY 474
              L+ Y
Sbjct: 463 ERVLSLY 469


>gi|171060633|ref|YP_001792982.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
 gi|170778078|gb|ACB36217.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
          Length = 511

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 189/497 (38%), Positives = 253/497 (50%), Gaps = 35/497 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T +   LVWLR DLR+ D+ AL+ A   S  KV   FI           + R+  FI+  
Sbjct: 28  TPVDAALVWLRRDLRLDDHAALHHAL-RSAKKVWCAFIFDTTILDALPRADRRVEFIHHG 86

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           ++++   L   G            D ++ + +      V  +  NR YE   V RD  + 
Sbjct: 87  IVELDGLLRAHGSGL----IVRHGDPLQEIPAIAGALGVQAVHINRDYEPAAVARDAQVR 142

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             L H  I   S  D V+     IL  A   + V+TP++ A ++ L    LR+ PV   R
Sbjct: 143 GALAHAGIALHSHKDQVIFETDEILTMAGSPFSVFTPYKNAWLKKLDGYYLRAYPVQ--R 200

Query: 184 LTGPVTP------SNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRD 235
             G + P        +P   D  F   D    +  G      +L  F  E++  Y + RD
Sbjct: 201 HIGALAPVPAALDRGVPTLNDLDFLPTDMAARLHPGASGGATLLLDFL-ERIDRYADTRD 259

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PAI+G S LS +L  G +S RQ   RL  E    ++    GA  WL+ELIWR+FY  ++
Sbjct: 260 FPAIKGPSYLSVHLRFGTVSIRQL-ARLAHE---RMVGGSRGAEVWLSELIWRDFYHQIL 315

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             +P V     + P  E + W    H   L  AW +G TG+PIIDAAM QLN  G+MHNR
Sbjct: 316 HHHPRVVT-HCYKPEYEALRWEHGKHAEQLFAAWCEGRTGYPIIDAAMLQLNRTGYMHNR 374

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+ ASFL KDL +DWR GE YF  QL D DLA+NNGGWQWAASTG D+ PYFRIFNP 
Sbjct: 375 LRMVVASFLTKDLGIDWRRGEAYFALQLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPI 434

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHK 464
            Q  RFD +G FIR +LP+L ++    IHAP  W  K          L  +YP+P+V+H 
Sbjct: 435 SQSLRFDAEGRFIRRYLPQLADLSRAAIHAP--WQAKPLELQAAGVKLGRDYPMPVVEHA 492

Query: 465 KACHHTLNQYYAAKKQS 481
           +A   TL ++ A K  +
Sbjct: 493 EARELTLARFAAVKGAA 509


>gi|46446306|ref|YP_007671.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399947|emb|CAF23396.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25]
          Length = 471

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 173/480 (36%), Positives = 261/480 (54%), Gaps = 33/480 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVF--IATPE-QWRQHGISARQSHFIYASLLQ 67
           +VW R D R+ DN AL AA       VI VF  +  PE +W+  G S     ++Y SL+ 
Sbjct: 6   IVWFRQDFRLEDNPALNAATQKG-GPVIPVFNWVFNPEKEWQLGGAS---QWWLYYSLIS 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+ G+     +    +D ++ L     +     +++NR+YE   ++ D  ++  L
Sbjct: 62  LKNDLSELGLSLIIRK----EDPLKSLLEIAHETGADTVYWNRRYEPMLIQDDAKIKTEL 117

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AIRL 184
           Q + I   SF+ ++L  P +I N   + ++V+TPF    ++  +      LPVP    + 
Sbjct: 118 QKQGIKAHSFNGNLLFEPWTIANKQGKPFQVFTPFWNQCLK--LNDPEVPLPVPHSLKKF 175

Query: 185 TGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            G +   +I      P     + +  ++  G ++A  +L+K     +  Y++ RD+P   
Sbjct: 176 VGQLQTESIDSLNLLPKIKWDKGLKEVWSPGAKSAKALLKKGLTGVIDQYLDIRDLPDHD 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LSPYL  G +SPR  W  +KE           GA  +L ++ WREF  HL+  +P 
Sbjct: 236 GTSLLSPYLHFGEISPRMIWQAVKENSTS------KGAEGYLRQIGWREFAHHLLYHFPE 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               KP         W  D   L+AW++G TG+PIIDA MRQL  IGWMHNR+R+I  SF
Sbjct: 290 TPQ-KPLRSQFNSFSWKNDKQNLKAWQKGQTGYPIIDAGMRQLWKIGWMHNRVRLIVGSF 348

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDL++ W  G ++F   L+D DLA+N  GWQW A  G D+ PYFRIFNP  QG++FDP
Sbjct: 349 LVKDLMIHWIEGAKWFWDTLVDADLANNTMGWQWIAGCGADAAPYFRIFNPITQGEKFDP 408

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVDHKKACHHTLNQY 474
           +G +++ W+PEL N+P +++H    AP   L ++  +L +NYP PIV+H KA    L  Y
Sbjct: 409 EGNYVKKWVPELINLPKEWLHQPWEAPEEILRQSGIELGINYPKPIVNHAKAREEALQAY 468


>gi|86607703|ref|YP_476465.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556245|gb|ABD01202.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 487

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 177/477 (37%), Positives = 258/477 (54%), Gaps = 17/477 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ DN AL+ A   S ++V+ VFI  P+  R+  ++  +  F+  +L ++Q+
Sbjct: 6   LLWHRRDLRLGDNTALHEAAQRS-SQVVPVFIFDPQMLRRSDMAPARVAFLLQALQELQE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             +Q GI   +      D S+E L    +      +F+N   E   ++++  ++  L   
Sbjct: 65  RYAQMGIPLIWRLG---DPSVE-LRCLAIDLGARAVFWNADGEPFALQQESRVQASLAAA 120

Query: 131 VICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I   S+ D +L  PG +L  A + Y V+TPF +    +L + D   +P     ++G + 
Sbjct: 121 GIQSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRWA-SLPKPDPYPIPKGLQPVSG-LK 178

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQLSPY 248
              +P   D  F     +   GE  A  +L  FC+  ++  Y   R+ PA  GTS LSP+
Sbjct: 179 AQPLPTLADLGFVCDQRIPAAGEAAAQALLEDFCQGLRILDYERARNFPAEPGTSLLSPH 238

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAFYPSVCMGKPF 307
           L  G +  RQ W   +E   ++  +    +  +W  EL WREFY+H++A +P V  G  +
Sbjct: 239 LCWGTIGIRQVWQATREVEAEVRSQEAESSLQTWRQELCWREFYKHVLAHWPHVETGA-Y 297

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + +EW+      QAW  G TG+PI+DAAMRQLN  GWMHNR RMI ASFL KDLL+
Sbjct: 298 RRAFDALEWDNRQDWFQAWCTGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLLI 357

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YFM +L+DGDLA+NNGGWQW+AS G D  P  RIFNP  Q  R+DP+G +IR 
Sbjct: 358 DWRWGERYFMQKLVDGDLAANNGGWQWSASVGTDPKP-LRIFNPATQAARYDPEGEYIRR 416

Query: 428 WLPELNNVPTQYI-----HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +LPEL  + T  +         +W  +   S  YP PIVDHK        +Y A ++
Sbjct: 417 YLPELARLDTPALLWVGDDPKGAWALRERRSCGYPDPIVDHKVQQQAFKRRYQAVQQ 473


>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
          Length = 475

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 256/462 (55%), Gaps = 17/462 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA     +K++ +F   P     + ++  +  ++   L ++++
Sbjct: 6   LFWHRRDLRISDNMGL-AAARKQSSKIVGLFCLDPNILNSNEVAPARVTYMLGCLQELKE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           S S+ G      +     + IE +    +  +VT +F+++  E     RD  +E+ L + 
Sbjct: 65  SYSKIGSQLLIVR----GEPIEAIPQLAVALQVTGVFWHKDGEPYARERDGKVEQELLKQ 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--LVQAD----LRSLPVPAIR 183
            +   ++ D +L PP  IL  + + Y VYTPF K   Q   L  A+    ++ L    I+
Sbjct: 121 GIAVTNYWDQLLHPPEDILTQSGKPYTVYTPFWKNWSQKPKLEVAEKLDRIQGLTAEEIK 180

Query: 184 LTGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +       ++P   D  +    + +   GE  A   L +F +  +  Y EQR+ PA++GT
Sbjct: 181 IAQETGVVSLPTGKDLGYYWDGELILTPGETAAREQLEEFSERAIAQYQEQRNFPAVEGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301
           S LSP L  GV+  R  W    E   +   +  ++   +W  EL WREFY+H +  +P +
Sbjct: 241 SLLSPALRFGVIGIRTVWQATLEATKNSYSEEVRANIETWQKELAWREFYQHALYHFPQL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            + +P+    +   W+ +    QAW +G TG+P++DAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 TV-EPYRQQFKDFPWDNNPEHFQAWCEGKTGYPMVDAAMRQLNETGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE+YFM +L DGDLASNNGGWQW+AS G D  P  RIFNP  Q K+FDP+
Sbjct: 360 TKDLIINWQWGEQYFMQKLCDGDLASNNGGWQWSASCGMDPKP-LRIFNPASQAKKFDPE 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           G +IR WLPEL+++ T+Y+       D+ +   +YP PIVDH
Sbjct: 419 GEYIRQWLPELSSIDTEYLVRGKIPDDERE-RCDYPQPIVDH 459


>gi|220905687|ref|YP_002480998.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
 gi|219862298|gb|ACL42637.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
          Length = 475

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 180/477 (37%), Positives = 253/477 (53%), Gaps = 39/477 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN  L AA     AKV+ VF   P    +  ++  +  ++  SL  +Q+
Sbjct: 6   LFWHRRDLRIADNVGL-AAARQRTAKVVGVFCLDPNLLERDDVAPARVAYMIGSLQHLQQ 64

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
              Q G  +   HQ      +I  L +  LQ +   +F+N   E     RD+ ++  L+ 
Sbjct: 65  QYVQSGSQLLILHQQPTI--AIPQL-ATALQAKA--VFWNWDVEPYSQERDRTVQTALET 119

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  ++F D +L PP +I   + + Y V++PF +   +       +  PVP++     +
Sbjct: 120 VGIEVQNFWDQLLHPPAAIKTGSGEAYTVFSPFWRNWSRQP-----KEPPVPSLATATGL 174

Query: 189 TPSN-----------IPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           TP+            +P   D  F    P+    GE  A   L +FC+  +Y Y ++R+ 
Sbjct: 175 TPTEQQAADQVGAIALPTAKDLGFIWDTPLPLEPGETAAQERLEQFCQRAIYAYQQERNF 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLM 295
           PA  GTSQLS  L  GVL  R  W   +        +    +  +W  EL WREFY+H +
Sbjct: 235 PATTGTSQLSAALKFGVLGIRTVWATTQSALESSRSQEAEDSIQTWQQELAWREFYQHAL 294

Query: 296 AFYPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            ++P++  G   +PF    +   W       QAW +G TG+PI+DAAMRQ+NTIGWMHNR
Sbjct: 295 YWFPALAEGAYRQPF----KTFPWQNRPDYFQAWCEGRTGYPIVDAAMRQMNTIGWMHNR 350

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL KDLL+D R GE+YFM +L+DGDLA+NNGGWQW+AS+G D  P  RIFNP 
Sbjct: 351 CRMIVASFLTKDLLIDPRWGEKYFMQKLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPA 409

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
            Q ++FDP+  +IR WLPEL +V T  +      L++ D    YPL IVDH    HH
Sbjct: 410 SQSQKFDPEADYIREWLPELRSVETADLVTGKISLEERD-RCGYPLAIVDH----HH 461


>gi|73540409|ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
           JMP134]
 gi|72117822|gb|AAZ60085.1| Deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
           JMP134]
          Length = 525

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 185/497 (37%), Positives = 259/497 (52%), Gaps = 42/497 (8%)

Query: 11  LVWLRNDLRITDNKAL-YAACHNSDAKVIAVF---IATPEQWRQHGISA-RQSHFIYASL 65
           LVW R DLR TD+ AL YA  H  +   + VF   I  P   R  G+   R+  FI ASL
Sbjct: 37  LVWFRRDLRSTDHAALHYALKHCREVWCVFVFDRDILDPLLAR--GLKGDRRVDFIRASL 94

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           +++  +L   G   IV         D +   + +   +  V  +F N  YE + V RD  
Sbjct: 95  IELDATLRAAGGGLIVMN-------DSAASAIPALARELGVQAVFANHDYEPDAVARDAA 147

Query: 123 LEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-P 180
           +   L     +  +F D V+     IL    + + V+TP++ A ++ +   DLR  P+ P
Sbjct: 148 VRDSLAGDARVLFTFKDQVIFERDEILTSQGKPFAVFTPYKNAWLKTIQPFDLRPYPIEP 207

Query: 181 AIRLTGPVTPSN----IPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +    P+ PS     +P   D    P    +   P G      +  +F   ++  Y  +
Sbjct: 208 YLHALAPL-PSKRLVPLPSLEDLGFAPSNLAEVAMPTGSSGGQALFEEFTS-RMGDYGRR 265

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA++G S LS +L  G +S R    R     V       +GA +WL+EL+WR+FY  
Sbjct: 266 RDYPALRGPSYLSVHLRFGTVSIRTL-ARAAHGAVLRGGADSAGAATWLSELVWRDFYFM 324

Query: 294 LMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           ++  +P V  G+ F P  + I W          ++W+   TG+P++DAAM Q+   G+MH
Sbjct: 325 ILHHHPRVAAGEAFHPAYDIIRWRDGETGDRYFESWRDAATGYPLVDAAMLQIRQSGYMH 384

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NRLRM+TASFLVKDL VDWR GE YF  QL D D A+NNGGWQWAASTG D+ P+FRIFN
Sbjct: 385 NRLRMVTASFLVKDLGVDWRRGEHYFADQLNDFDFAANNGGWQWAASTGCDAQPWFRIFN 444

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NYPLPIVD 462
           P  Q ++FDPQG FIR +LP+L  +P +Y+HAP  W    D+ L        NYP P+V 
Sbjct: 445 PVTQSEKFDPQGRFIRKYLPQLAALPDKYVHAP--WTAPQDVLLAAGVRLGENYPRPLVQ 502

Query: 463 HKKACHHTLNQYYAAKK 479
           H  A   TL +Y   K+
Sbjct: 503 HDVARKETLERYAVVKE 519


>gi|284800868|ref|YP_003412733.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578]
 gi|284994054|ref|YP_003415822.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923]
 gi|284056430|gb|ADB67371.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578]
 gi|284059521|gb|ADB70460.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923]
          Length = 467

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 252/483 (52%), Gaps = 39/483 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC   D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQAFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLL 123
           + + +       H    F + IE     C QQ         K+++N        +RD+  
Sbjct: 58  QEVDKTA-----HLQIMFGEPIE-----CFQQLKDTLPSWDKVYFNLDETGYGAKRDEAA 107

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +    + ++  ++F DS L     +     + YK++TP+ K   + + +   +    P  
Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKMTLKPEN 167

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                + P    +F +       P+   GE+ A   L  F K  +  Y + RD P +  T
Sbjct: 168 IWKESLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKT 225

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS YL  G +S R  W  L+E       +   G   +  EL WR+FY  +   +P+  
Sbjct: 226 SHLSRYLRTGEISVRTIWQALQEN------EATEGRAIFEKELCWRDFYNMIYVSFPNQ- 278

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +P       IEW  +    +AW+ G TGFP++DAAMRQL   GWMHNRLRM+TASFL 
Sbjct: 279 KNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLT 338

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G
Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTG 398

Query: 423 TFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSL----NYPLPIVDHKKACHHTLNQYYA 476
            FIR ++ EL N+P ++IH P   S +++ +  L    +YP P++DHK+     + +Y  
Sbjct: 399 KFIRKYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEF 458

Query: 477 AKK 479
           +K+
Sbjct: 459 SKE 461


>gi|330824678|ref|YP_004387981.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
           K601]
 gi|329310050|gb|AEB84465.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
           K601]
          Length = 491

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 185/499 (37%), Positives = 264/499 (52%), Gaps = 49/499 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGISARQS 58
           A +  LVWLR DLR  D+ ALY A      +V   F+       A P +      S R+ 
Sbjct: 5   ATASALVWLRRDLRCDDHAALYHALRRF-GRVYCAFVFDTDILDALPTR------SDRRV 57

Query: 59  HFIYASLLQVQKSLSQ---------KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
            FI+AS+L++ + L++          G++ ++        + E +        V ++  N
Sbjct: 58  EFIHASVLELHQGLAELAARSGAPGGGLIVRH------GPAPECIVRLARSLGVQEVLAN 111

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           R YE   + RD+ + + LQ   I  S + D  LL    +L    + Y V+TP+R+A +Q 
Sbjct: 112 RDYEPQAIERDRRVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGVFTPYRRAWLQR 171

Query: 169 LVQADLRSLPVP--AIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKF 222
           L    L   PV   A  L  P     +P   +  F   +    P+ P G + A  +L+ F
Sbjct: 172 LDAFQLTPYPVASHARHLAAPPAGECLPTLQELGFARTNLHELPL-PTGMRGAQLLLQDF 230

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
                 Y+ E RD P  +G S LS +L  G +S RQ    L         +   GA +WL
Sbjct: 231 MPRMAAYH-EARDYPGRKGVSYLSVHLRFGTVSIRQ----LAALAAAQAAQGCEGAQAWL 285

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           +EL WR+FY  ++  +P V   + F P  ++++W+    L QAW    TG+P++DAAMRQ
Sbjct: 286 SELAWRDFYFMILWHHPQVAT-QSFKPVYDRVQWDDAPELWQAWCGARTGYPLVDAAMRQ 344

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L+  G+MHNRLRM+ ASFL KDL +DWR GE +F + L D DLA+NNGGWQWAASTG D+
Sbjct: 345 LHQTGYMHNRLRMVVASFLTKDLGLDWRRGERHFAAHLNDYDLAANNGGWQWAASTGCDA 404

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456
            P+FRIFNP  Q +RFDPQG FIR +LPEL  VP  +IH P +            L ++Y
Sbjct: 405 QPWFRIFNPVTQSQRFDPQGRFIRCYLPELARVPDAHIHFPAAMGPLELAACGLRLGVDY 464

Query: 457 PLPIVDHKKACHHTLNQYY 475
           PLP+VDH +A   TL +++
Sbjct: 465 PLPVVDHARARERTLMRFH 483


>gi|319762589|ref|YP_004126526.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC]
 gi|317117150|gb|ADU99638.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC]
          Length = 491

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 184/499 (36%), Positives = 264/499 (52%), Gaps = 49/499 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGISARQS 58
           A +  LVWLR DLR  D+ ALY A      +V   F+       A P +      S R+ 
Sbjct: 5   ATASALVWLRRDLRCDDHAALYHALRRF-GRVYCAFVFDTDILDALPTR------SDRRV 57

Query: 59  HFIYASLLQVQKSLSQ---------KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
            FI+AS+L++ + L++          G++ ++        + E +        V ++  N
Sbjct: 58  EFIHASVLELHQGLAELAARSGAPGGGLIVRH------GPAPECIVRLARSLGVQEVLAN 111

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           R YE   + RD+ + + LQ   I  S + D  LL    +L    + Y V+TP+R+A +Q 
Sbjct: 112 RDYEPQAIERDRRVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGVFTPYRRAWLQR 171

Query: 169 LVQADLRSLPVP--AIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKF 222
           L    L   PV   A  L  P     +P   +  F   +    P+ P G + A  +L+ F
Sbjct: 172 LDAFQLTPYPVASHARHLAAPPAGECLPTLQELGFARTNLHELPL-PTGMRGAQQLLQDF 230

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
                 Y+ E RD P  +G S LS +L  G +S RQ    L         +   GA +WL
Sbjct: 231 MPRMAAYH-EARDYPGRKGVSYLSVHLRFGTVSIRQ----LAALAAAQAAQGCEGAQAWL 285

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           +EL WR+FY  ++  +P V   + F P  ++++W+    L QAW    TG+P++DAAMRQ
Sbjct: 286 SELAWRDFYFMILWHHPQVAT-QSFKPVYDRVQWDDAPELWQAWCGARTGYPLVDAAMRQ 344

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L+  G+MHNRLRM+ ASFL KDL +DWR GE +F + L D DLA+NNGGWQWAASTG D+
Sbjct: 345 LHQTGYMHNRLRMVVASFLTKDLGLDWRRGERHFAAHLNDYDLAANNGGWQWAASTGCDA 404

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456
            P+FRIFNP  Q ++FDPQG FIR +LPEL  VP  +IH P +            L ++Y
Sbjct: 405 QPWFRIFNPVTQSQKFDPQGRFIRCYLPELARVPDAHIHFPAAMGPLELAACGLRLGVDY 464

Query: 457 PLPIVDHKKACHHTLNQYY 475
           PLP+VDH +A   TL +++
Sbjct: 465 PLPVVDHARARERTLMRFH 483


>gi|296159661|ref|ZP_06842484.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. Ch1-1]
 gi|295890105|gb|EFG69900.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. Ch1-1]
          Length = 499

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 180/497 (36%), Positives = 263/497 (52%), Gaps = 47/497 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISA----RQSH 59
           LVWLR DLR TDN ALY A  + + +V  VF+          + W           R+  
Sbjct: 15  LVWLRRDLRNTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDAWHARHPDTQPQDRRIE 73

Query: 60  FIYASLLQVQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           FI A+L ++ ++L     G++  Y   ++       + +   +     +F N  YE   +
Sbjct: 74  FILAALGELDEALRTDGGGLIVLYGNPADL------VPTLADELGADAVFANHDYEPVAI 127

Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ + ++L +      +F D V+     +L    + + V+TP+R A ++ L   DL+ 
Sbjct: 128 ERDETVREQLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSTFDLKP 187

Query: 177 LPVPAIRLTGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            PV          PS + R           P    +   P G   A  +L  F   ++  
Sbjct: 188 YPVETYAKHLAALPSRLDRQLPTLEQLGFAPSNLGELSLPTGMSGAQRLLDDFMT-RIDS 246

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWR 288
           Y ++RD PA +G S LS +L  G +S R    RL  E   L ++P   G+ +WL+ELIWR
Sbjct: 247 YADRRDFPAAKGPSYLSIHLRFGTVSIRTL-ARLAHE---LSLQPDGQGSATWLSELIWR 302

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +FY  ++A +P +  G  F    +++ W +         AW  G TG+P++DAAM QLN 
Sbjct: 303 DFYFMILAHHPRLARGASFKEEYDRLRWEQGPEADEAFAAWCDGRTGYPLVDAAMLQLNR 362

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D ++NNGGWQWAASTG D+ PY
Sbjct: 363 TGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAASTGCDAQPY 422

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYP 457
           FRIFNP  Q ++FD +G FI+ +LP+L  +P+++IHAP  WL   +        L  +YP
Sbjct: 423 FRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAP--WLAGAERLAECGVVLGKDYP 480

Query: 458 LPIVDHKKACHHTLNQY 474
            PIVDH +A   TL ++
Sbjct: 481 APIVDHAEARARTLARF 497


>gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC30]
 gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC10]
 gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC30]
 gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC10]
          Length = 469

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 182/493 (36%), Positives = 259/493 (52%), Gaps = 58/493 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYA 63
           ++W R DLR+ DN AL  A  +  ++ +++ VF    +Q+     S     +  +HFI A
Sbjct: 1   MMWFRKDLRLEDNTALTEALASLQANDQLLCVFHLNDKQFLPDAPSHDYFFSAVAHFIEA 60

Query: 64  SLLQ-VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           +  Q +   L    +   + Q   F    EW          ++L++N        +RD  
Sbjct: 61  AKKQNLTIHLLTGTLTEAFDQL--FACYPEW----------SQLYFNFDNRGYGRKRDLY 108

Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           + + ++ + +   SF+D  L  P  +       YK +TP+ K  IQ         LP P 
Sbjct: 109 ITELVEQKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQ---------LPKPV 159

Query: 182 IRLTGPVTPSNIPRFFDYP-FQA-------------IDPMFPIGEQNALHILRKFCKEKV 227
            +    +       F D P F+A              D    +GE  A   L+ F ++++
Sbjct: 160 YQ-KHALDFEKAAHFNDAPHFKAGTMLLAELIKNRKTDFSTIVGEDYAHKQLQAFVQKRL 218

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y + RDIP+I+GTS+LSP+LS G +S R+ W   +E      +   +G  ++L EL W
Sbjct: 219 AAYEKDRDIPSIKGTSRLSPFLSFGQISIRKVWAACQE------MPSSTGKATFLKELAW 272

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+FY H++ F          I     ++W KD   L  W+ G TG+PIIDAAMRQLN  G
Sbjct: 273 RDFY-HMIYFTHPEQKNYELIEKYRNMDWQKDEEALNKWQAGQTGYPIIDAAMRQLNQTG 331

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNRLRMI ASFL KDLL+DWR GE YF  QL+D D ASN GGWQWAASTG D+VPYFR
Sbjct: 332 WMHNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFR 391

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461
           IFNP  QGK+FD  GTFI+ ++PEL  +P +++H P+   ++        L  +YPLPIV
Sbjct: 392 IFNPITQGKKFDKDGTFIKQFVPELAQLPLKFVHEPYLMTNQEQADLQIVLGTDYPLPIV 451

Query: 462 DHKKACHHTLNQY 474
           DH +A    L+ Y
Sbjct: 452 DHNEARKRALDLY 464


>gi|218246283|ref|YP_002371654.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
 gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
          Length = 481

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 181/491 (36%), Positives = 258/491 (52%), Gaps = 43/491 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L  A   S +KV+ +F        Q+ I+  +  ++   L ++Q+
Sbjct: 6   LFWHRKDLRISDNIGLAKARQKS-SKVVGIFCFDSNILEQNDIAPVRIAYLIGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-----FYNRQYEINEVRRDKLLEK 125
           +  + G    + Q            S+ + Q    L     F+N   E    RRD+ + +
Sbjct: 65  TYQKLGSNLLFIQGE---------PSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQ 115

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF--------RKALIQNLVQADLRS 176
            L+ + I  +++ D +L  PG I+  + + YKVYTPF        + ++  NL    L  
Sbjct: 116 ALKEQGIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNL--ESLEG 173

Query: 177 LPVPAIRLTGPVTPSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           L    ++    V   ++P        +DYP      +   GE  A   L  FC   +  Y
Sbjct: 174 LTQTELQQAKNVNIIDLPTVQELGYRWDYPL-----ILSPGETAAAERLDYFCDAAINEY 228

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            EQR+ PAI+GTSQLSP L  GV+  R  W   LK        + +    +W  EL WRE
Sbjct: 229 QEQRNFPAIEGTSQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWRE 288

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FY+H + F+P +  G P+    +   W+ +  L QAW +G TG+PI+DAAMRQLN  GWM
Sbjct: 289 FYQHCLYFFPELAEG-PYREDFQDFPWDNNEVLFQAWCEGKTGYPIVDAAMRQLNETGWM 347

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RMI ASFL KDL+++W+ GE+YFM  L+DGDLA+NNGGWQW+AS+G D  P  RIF
Sbjct: 348 HNRCRMIVASFLTKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIF 406

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           NP  Q ++FDP   +IR WLPEL ++ T+  +    S LD   LS  YP PIV+H +   
Sbjct: 407 NPASQAQKFDPDADYIRQWLPELRSLDTEVLVTGKISPLDC--LSCGYPQPIVNHNQQQR 464

Query: 469 HTLNQYYAAKK 479
               +Y   K+
Sbjct: 465 EFKRRYSQVKQ 475


>gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 483

 Score =  285 bits (730), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 177/497 (35%), Positives = 266/497 (53%), Gaps = 33/497 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A+   ++W R DLR+ DN+AL AA H S   +I V+I  P       + A Q+ +++
Sbjct: 2   AKDAVKPVILWFRRDLRLDDNQALNAA-HLSGRPIIPVYINEPAAAGTGPLGAAQAWWLH 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + +SL ++    Q        D++E L +   +     +F+NR+Y+ + +  D  
Sbjct: 61  HSLEALDRSLHER----QGELVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTH 116

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +++ L+ + I  +SF   +L  P  ++      Y+VYTPF +AL +   +A+   L  PA
Sbjct: 117 IKQELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRAL-EGAGEAEP-PLEAPA 174

Query: 182 -IRLTGPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +RL      S        +P   D+     D   P GEQ A   L  F ++++  Y E 
Sbjct: 175 KLRLASQRPASETLKSWKLLPTKPDWAKGFADLWTP-GEQGARERLSAFVEDELKGYKEN 233

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA   TS LSP+L++G +SP + W+  +     +   P +    +  E+ WREF  H
Sbjct: 234 RDYPAKPATSMLSPHLALGEISPARIWDATRGLSNRV---PAADIVHFRKEIAWREFSYH 290

Query: 294 LMAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           L+  +P +        W ++ +   W  D    +AW++G TG+PI+DA MRQL   GWMH
Sbjct: 291 LLFHFPRLASEN----WNDRFDGFKWRNDDGDFEAWRRGMTGYPIVDAGMRQLWRHGWMH 346

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RMI ASFL+KDL++DWR GE +F   L+D D A+N   WQW A +G D+ P+FRIFN
Sbjct: 347 NRVRMIVASFLIKDLMIDWRDGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFN 406

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHK 464
           P +QG+ FDP G ++R  +PEL  +  +YIH    AP S LD+  + L   YP PIVDH 
Sbjct: 407 PMLQGETFDPDGDYVRAHVPELQRLGAKYIHRPFEAPKSALDEAGIILGQTYPKPIVDHA 466

Query: 465 KACHHTLNQYYAAKKQS 481
            A    L  Y A K  +
Sbjct: 467 SARDRALAAYKATKDAA 483


>gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
           7335]
 gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
           7335]
          Length = 480

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 181/488 (37%), Positives = 250/488 (51%), Gaps = 31/488 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN  L AA      KV+ VF   P       I+  +  ++  SL ++Q+
Sbjct: 7   LFWHRRDLRIRDNLGL-AAARKRTPKVVGVFCLDPGILNGDDIAPARVSYMIGSLAELQE 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +    G      +    +++I  L S         +++NR  E     RD  +   L+ R
Sbjct: 66  NYQSAGSELLILK-GKPEEAIPNLASAL---GAAAVYWNRDVEPYARERDPNVASALKDR 121

Query: 131 VICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            I  S    D +LLPP ++   A + YKVYTPF +  I+   Q    +            
Sbjct: 122 DIESSTQYWDQLLLPPDALKTGAGEPYKVYTPFWRKWIRQEKQPPASTFAAATGLSPHEK 181

Query: 189 TPSNIPRFFDYPFQAI-------DPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAI 239
           + +N     D P           + +   GE  AL  L KFC ++  +  Y +QRD P+I
Sbjct: 182 SLANKAGNIDLPTAKALGYEWENELLLQPGEAAALAQLEKFCDDRRVIAEYDQQRDYPSI 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----SWLNELIWREFYRHL 294
            GTS LS  L  G L  R  W    E   D   + +S        +W  EL WREFY+ +
Sbjct: 242 AGTSTLSAALKFGTLGIRTVW----EAASDAYSRARSEETHRNIRTWQQELAWREFYQSV 297

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           M  +P++  G P+    +   W+ D  L QAW +G TG+PI+DAAMRQLN  GWMHNR R
Sbjct: 298 MYTFPNLAEG-PYREPLKDFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCR 356

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL KDL++DWR GE+YFM  L DGDL++NNGGWQW+AS+G D  P  RIFNP  Q
Sbjct: 357 MIVASFLTKDLIIDWRWGEKYFMQHLFDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQ 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQ 473
            K++DP+  +IR WLPE+ ++ T  + +    +D NDL    YP  +VDHK+       +
Sbjct: 416 AKKYDPEAEYIREWLPEIRHLDTGALVSGK--IDSNDLEGTGYPCKVVDHKEQ-QAIFKE 472

Query: 474 YYAAKKQS 481
            Y A+K S
Sbjct: 473 RYKAQKAS 480


>gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis alexandrii HTCC2633]
 gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis alexandrii HTCC2633]
          Length = 480

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 179/483 (37%), Positives = 263/483 (54%), Gaps = 29/483 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67
           +VW R DLR+ DN AL AA     A VI V+I     P  WR  G S     +++ SL  
Sbjct: 9   IVWFRQDLRLADNPALQAAAATG-APVIPVYILDDDAPGDWRPGGAS---RWWLHHSLAS 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L Q G      +     ++ E LD+   Q     +F+NR YE    +RD+ ++  L
Sbjct: 65  LASDLQQLGGELALMKG----EAQEQLDALIEQTGADTVFWNRLYEPWARKRDEAIKSSL 120

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + R V  +SF+ S+++ P  I       YKV+TPF K+L  +   A+    P  A++L  
Sbjct: 121 KDRGVRARSFNGSLIVEPWDIATKTGNPYKVFTPFWKSLKADHTPAEPTGRP-DALQLHA 179

Query: 187 PVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                ++      P +      +   +  GE  A   L +F K  V  Y ++RD+P   G
Sbjct: 180 HEGGLSLDDLDLLPTKPDWSGGLQENWTPGEAAAHGRLGQFLKAAVSDYSDRRDLPGQSG 239

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G +SPRQ W+ +K+           GA ++L+E+ WREF  +L+  +P +
Sbjct: 240 TSRLSPHLHFGEISPRQVWHAVKQSD----HARTGGADTYLSEIAWREFSYNLLYHFPDL 295

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                F    +  EW++    L+AW++G TG+PI+DA MR+L   GWMHNR+RMI ASFL
Sbjct: 296 PEAN-FQSKFDAFEWDECEDKLKAWQKGQTGYPIVDAGMRELWATGWMHNRVRMIVASFL 354

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +KDL + WR GE++F   L+D DLASN   WQW A +G D+ PYFR+FNP  Q ++FDP+
Sbjct: 355 IKDLFIHWRRGEDWFWDTLVDADLASNAASWQWTAGSGADAAPYFRVFNPVGQSEKFDPK 414

Query: 422 GTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475
           G ++R W+PEL ++P + IHAP     S L +  ++L   YP PIVDH +A    L  + 
Sbjct: 415 GDYLRKWIPELADLPDKVIHAPWTAEKSVLSRAGVTLGETYPEPIVDHGEARKRALAAFE 474

Query: 476 AAK 478
             K
Sbjct: 475 KIK 477


>gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 482

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 171/501 (34%), Positives = 261/501 (52%), Gaps = 42/501 (8%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    ++W R DLR+ DN+AL AA H S   +I ++I  P       + A Q+ +++
Sbjct: 2   AKDAAKPVILWFRKDLRLDDNQALTAA-HRSGRPIIPLYIREPAAAGTGPLGAAQAWWLH 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + +SL +              +++E L ++  +     +F+NR+Y+   +  D  
Sbjct: 61  HSLEALNRSLQK----LNGRLVLASGEALEVLCAFIKESAAEAVFWNRRYDPAGISIDAR 116

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-------VQADL 174
           ++  L+ + I  +SF   +L  P  ++      Y+VYTPF +AL             A L
Sbjct: 117 IKHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGGEPEPPLDAPAKL 176

Query: 175 RSLPVPAIRLTG-----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
           R    P   + G     P  P     F D        ++  GE+ A   L  F ++ +  
Sbjct: 177 RLASQPKSEVLGSWKLLPTKPDWAGDFVD--------LWTPGEEGAQQRLHVFVEDALEG 228

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y E RD PA   TS LSP+L++G +SP + W+  +     +   P +    +  E+ WRE
Sbjct: 229 YKENRDYPARPATSMLSPHLALGEISPARIWDATRGLSQRV---PAADIVHFREEIAWRE 285

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           F  HL+  +P +        W ++    EW  +S   +AW++G TG+PI+DA MRQL   
Sbjct: 286 FSYHLLFHFPRLASAN----WNDRFDGFEWRNNSGDFEAWRRGMTGYPIVDAGMRQLWRH 341

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+RMI ASFL+KDL++DWR GE +F   L+D D A+N   WQW A +G D+ P+F
Sbjct: 342 GWMHNRVRMIVASFLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFF 401

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPI 460
           RIFNP +QG++FDP G ++R ++PEL  +  +YIH    AP S LD+  ++L   YP PI
Sbjct: 402 RIFNPVLQGEKFDPDGDYVRTYVPELRELGPKYIHRPFEAPKSMLDEAGITLGQTYPKPI 461

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
           VDH  A +  L  Y A +  +
Sbjct: 462 VDHASARNRALAAYKAIRDAA 482


>gi|288553212|ref|YP_003425147.1| deoxyribodipyrimidine photolyase PhrB [Bacillus pseudofirmus OF4]
 gi|298286845|sp|Q04449|PHR_BACPE RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|288544372|gb|ADC48255.1| Deoxyribodipyrimidine photolyase, FAD-binding PhrB [Bacillus
           pseudofirmus OF4]
          Length = 479

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 179/488 (36%), Positives = 254/488 (52%), Gaps = 45/488 (9%)

Query: 8   SVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           S+  VW R D R+ D+ AL     A      K +A F   P   +   +      + + +
Sbjct: 6   SLKAVWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP---KTASVEPVHHDYFFQT 62

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ--RVTKLFYNRQYEINEVRRDKL 122
           ++Q ++ L   G             +IE   S  LQ    +  ++ N     +   RD+ 
Sbjct: 63  VMQFKQMLKTNG-----GDLYIITGTIEGALSKLLQAFPEIDAVYANDDRVGDGRLRDEA 117

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQADLR 175
            E  L  + I   +F+D+ L  P  +L      YKV+TP+ KA  +       +++ D+ 
Sbjct: 118 AEHFLAKQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDV- 176

Query: 176 SLPVPAIRLTGPVTPS-----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
            L     + T P   +     N+ +   Y + A      IGE++A+  L+ F K+++  Y
Sbjct: 177 -LLGSVHKGTAPDREAETLFNNLIKKCSYDWSA------IGEEHAIKRLQMFTKKRLSGY 229

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              RD P+I GTS+LSPY+  G +S R  +  +     D        A ++L EL WR+F
Sbjct: 230 KANRDFPSITGTSRLSPYIKTGAVSSRSIYYHILNAEAD-----SYSAETFLKELAWRDF 284

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           YR ++ FY   C  +  +    ++ W+ D   L +WK+G TGFPI+DA MRQL   GWMH
Sbjct: 285 YR-MVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMH 343

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NRLRMITASFL KDLL+DWR+GE YF   L+D D +SN GGWQWAAS G D+VPYFRIFN
Sbjct: 344 NRLRMITASFLTKDLLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFN 403

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
           P  Q KRFD  GT+IR ++PELN+VP  YIH P    ++        L  +YPLPIVDH 
Sbjct: 404 PVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIVDHS 463

Query: 465 KACHHTLN 472
           K     L+
Sbjct: 464 KQRKKALS 471


>gi|86605487|ref|YP_474250.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
 gi|86554029|gb|ABC98987.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
          Length = 479

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 173/481 (35%), Positives = 256/481 (53%), Gaps = 19/481 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+ L+W R DLR+ DN AL+ A   S  +V+ VF+  P+  ++  ++  +  F+  +L +
Sbjct: 3   SLVLLWHRRDLRLGDNTALHGAAQRS-PQVVPVFVFDPQLLQRADMAPARVAFLLQALQE 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+  +Q GI   + +    D ++E L     +     +F+N   +    +++  +   L
Sbjct: 62  LQERYAQMGIPLLWRRG---DPAVE-LRQLAAELGAQAVFWNEDLDPWARQQESRVRASL 117

Query: 128 QHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRLT 185
               I   S+ D +L  PG +L  A + Y V+TPF +    +L + D    P+P +++  
Sbjct: 118 AEAGIPSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRW-SSLPKPD--PFPIPKSLQAV 174

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQ 244
             +    +P   D  F     +   GE  A  +L  FC+  +++ Y   RD PA QGTS 
Sbjct: 175 SSLKAQPLPSLADLGFVCNQRIPAAGESVAQGLLEDFCQGLRIFEYGRARDFPAEQGTSL 234

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAFYPSVCM 303
           LSP+L  G +  R+ W    E   +   +    +  +W  EL WREFY+H++  +P V  
Sbjct: 235 LSPHLCWGTIGIRRVWQATCEVEAEARSEEAESSLKTWRQELCWREFYKHVLVHWPHVES 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G  +    + +EW+      QAW  G TG+PI+DAAMRQLN  GWMHNR RMI ASFL K
Sbjct: 295 GA-YRRAFDALEWDNRQDWFQAWCAGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK 353

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFM +L+DGDLA+NNGGWQW+A  G D  P  RIFNP  Q  R+DP+G 
Sbjct: 354 DLLIDWRWGERYFMQKLVDGDLAANNGGWQWSAGVGTDPRP-LRIFNPATQAARYDPEGE 412

Query: 424 FIRHWLPELNNVPTQYI-----HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +IR +LPEL  + T  +         SW  +      YP PIVDHK        +Y A +
Sbjct: 413 YIRRYLPELAGLDTPALLWVGDDPKGSWALQERRRCGYPDPIVDHKVQQQEFKRRYQAVQ 472

Query: 479 K 479
           +
Sbjct: 473 Q 473


>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
 gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
          Length = 481

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 179/491 (36%), Positives = 255/491 (51%), Gaps = 43/491 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L  A   S +KV+ +F        +  I+  +  ++   L ++Q+
Sbjct: 6   LFWHRKDLRISDNVGLAKARQES-SKVVGIFCFDSNILERDDIAPARIAYLLGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-----FYNRQYEINEVRRDKLLEK 125
           +  + G    + Q            S+ + Q    L     F+N   E    RRD+ + +
Sbjct: 65  TYQKLGSNLLFIQGE---------PSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQ 115

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------------IQNLV 170
            L+ + I  +++ D +L  PG I+  + + YKVYTPF K                ++ L 
Sbjct: 116 ALKEQGIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLENLEGLT 175

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           Q +L       +++    T   +   +DYP      +   GE  A   L  FC   +  Y
Sbjct: 176 QTELEQ--AKTVKIIDLPTVKELGYRWDYPL-----ILSPGETAAAERLDYFCDAAINEY 228

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            EQR+ PAI+GTSQLSP L  GV+  R  W   LK        + +    +W  EL WRE
Sbjct: 229 QEQRNFPAIEGTSQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWRE 288

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FY+H + F+P +  G P+    +   W+ +  L QAW  G TG+PI+DAAMRQLN  GWM
Sbjct: 289 FYQHCLYFFPELAEG-PYREDFQDFPWDNNEVLFQAWCDGKTGYPIVDAAMRQLNETGWM 347

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RMI ASFL KDL+++W+ GE+YFM  L+DGDLA+NNGGWQW+AS+G D  P  RIF
Sbjct: 348 HNRCRMIVASFLTKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIF 406

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           NP  Q ++FDP   +IR WLPEL ++ T+  +    S LD   LS  YP PIV+H +   
Sbjct: 407 NPASQAQKFDPDADYIRQWLPELRSLDTEVLVTGKISPLDC--LSCGYPQPIVNHNQQQR 464

Query: 469 HTLNQYYAAKK 479
               +Y   K+
Sbjct: 465 EFKRRYSQVKQ 475


>gi|71903837|ref|YP_280640.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
 gi|71802932|gb|AAX72285.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
          Length = 477

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 185/495 (37%), Positives = 266/495 (53%), Gaps = 46/495 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           ++ V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+
Sbjct: 7   SVMVSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSV 63

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEV 117
           L  +K L          +C + D  + + D   C +Q +T+L       F   +     +
Sbjct: 64  LAFRKLL----------KCESIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRL 113

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           R  K  +   ++ +   ++ D  L     I+N + Q YKV+TP+ + + QN  +     +
Sbjct: 114 RDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKV 172

Query: 178 PVPAIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +   R     TP ++ R    F D  +Q +       +Q     L +F ++++  Y   
Sbjct: 173 ELSQGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHAN 227

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292
           RD PA  GTS+LSP+L IG +  R  ++ +++        P S G  ++L EL WR+FY 
Sbjct: 228 RDFPAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYN 280

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +   YP     +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNR
Sbjct: 281 MVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 339

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMI ASFL KDLL DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP 
Sbjct: 340 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 399

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAP---HSWLDKND---LSLNYPLPIVDHKKA 466
            QGKRFDP+G FI+ +LP+L +VP +Y+H P     +L ++    +  +YP PIVDH K 
Sbjct: 400 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQ 459

Query: 467 CHHTLNQYYAAKKQS 481
               + +Y  AK+++
Sbjct: 460 REQAIAKYEWAKEKA 474


>gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
           DG1235]
 gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
           DG1235]
          Length = 472

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 175/481 (36%), Positives = 251/481 (52%), Gaps = 40/481 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL  A  + +  V+ V++   E        A    +++ SL  + +
Sbjct: 8   IVWFRRDLRLADNPALSEALASGE-PVLPVYVFDEEGEGDSPDGAASKWWLHHSLASLDE 66

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL   G      + S+    +E     C +     +F+NR+YE   V RD  ++K L   
Sbjct: 67  SLKGLGSRLVLLRGSSKSALVE----LCREMGARAVFWNRRYEPAVVERDTEIKKSLVDC 122

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V  +SF+ S++  P S+ N +   +KV+TPF K  IQNL      S   P  +     T
Sbjct: 123 GVQARSFNGSLMQSPLSVANKSGTPFKVFTPFWKH-IQNL------STRTPLAKPDALTT 175

Query: 190 PSNIPR------FFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           P ++P+      F   P        +  +  GE+ A   L  F K     Y + RD P++
Sbjct: 176 PKSLPKGESLESFELLPRLSWADGFNEEWIPGEKGAEKALSLFAKGGAAKYAKDRDTPSV 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +G S+LSP+L  G +SP Q W+ L  +  +           +L ++ WREF  HL+ F+ 
Sbjct: 236 RGVSRLSPHLHFGEISPNQIWHALDRKKHE----------PYLRQIAWREFAHHLL-FHF 284

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P  P      W ++   L+AW+ G TG+PI+DA MR+L   GWMHNR+RMI +S
Sbjct: 285 KDTPSEPLRPEFAAFPWTRNPGWLKAWQTGQTGYPIVDAGMRELWQTGWMHNRVRMIASS 344

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK LL  W+ G  +F   L+D DLA+N  GWQW A  G D+ PYFRIFNP  QG+RFD
Sbjct: 345 FLVKHLLQPWQDGAAWFWDTLVDADLANNTMGWQWVAGCGADAAPYFRIFNPITQGERFD 404

Query: 420 PQGTFIRHWLPELNNVPTQYI----HAPHSWLDKN--DLSLNYPLPIVDHKKACHHTLNQ 473
             GT+ R W+PEL  +P +Y+     AP + L+K   DL  NYP+PIVDH KA    L+ 
Sbjct: 405 GDGTYTRRWMPELARLPNKYLFKPWEAPAALLEKAGVDLGGNYPMPIVDHGKARKAALDA 464

Query: 474 Y 474
           Y
Sbjct: 465 Y 465


>gi|94990761|ref|YP_598861.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270]
 gi|94544269|gb|ABF34317.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270]
          Length = 477

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 186/496 (37%), Positives = 264/496 (53%), Gaps = 48/496 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           ++ V ++W R DLRI D KAL A    S +  + VF    EQ      S  QS FI  S+
Sbjct: 7   SVMVSVMWFRRDLRIDDQKAL-AHVIASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSV 63

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEV 117
           L  +K L          +C   D  + + D   C +Q +T+L       F   +     +
Sbjct: 64  LAFRKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRL 113

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           R  K  +   ++ +   ++ D  L     I+N + Q YKV+TP+ + + QN  +     +
Sbjct: 114 RDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKV 172

Query: 178 PVPAIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +   R     TP ++ R    F D  +Q +       +Q     L +F ++++  Y   
Sbjct: 173 ELSQDRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHAN 227

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292
           RD PA  GTS+LSP+L IG +  R  ++ +++        P S G  ++L EL WR+FY 
Sbjct: 228 RDFPAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYN 280

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +   YP     +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNR
Sbjct: 281 MVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 339

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMI ASFL KDLL DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP 
Sbjct: 340 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 399

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKK 465
            QGKRFDP+G FI+ +LP+L +VP +Y+H P   + KN        +  +YP PIVDH K
Sbjct: 400 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWK-MPKNLQESVSCIIGTDYPQPIVDHAK 458

Query: 466 ACHHTLNQYYAAKKQS 481
                + +Y  AK+++
Sbjct: 459 QREQAIAKYEWAKEKA 474


>gi|94994739|ref|YP_602837.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
 gi|94548247|gb|ABF38293.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
          Length = 477

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 186/496 (37%), Positives = 264/496 (53%), Gaps = 48/496 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           ++ V ++W R DLRI D KAL A    S +  + VF    EQ      S  QS FI  S+
Sbjct: 7   SVMVSVMWFRRDLRIDDQKAL-AHVIASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSV 63

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEV 117
           L  +K L          +C   D  + + D   C +Q +T+L       F   +     +
Sbjct: 64  LAFRKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRL 113

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           R  K  +   ++ +   ++ D  L     I+N + Q YKV+TP+ + + QN  +     +
Sbjct: 114 RDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKV 172

Query: 178 PVPAIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +   R     TP ++ R    F D  +Q +       +Q     L +F ++++  Y   
Sbjct: 173 ELSQGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHAN 227

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292
           RD PA  GTS+LSP+L IG +  R  ++ +++        P S G  ++L EL WR+FY 
Sbjct: 228 RDFPAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYN 280

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +   YP     +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNR
Sbjct: 281 MVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 339

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMI ASFL KDLL DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP 
Sbjct: 340 LRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPV 399

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKK 465
            QGKRFDP+G FI+ +LP+L +VP +Y+H P   + KN        +  +YP PIVDH K
Sbjct: 400 TQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWK-MPKNLQESVSCIIGTDYPQPIVDHAK 458

Query: 466 ACHHTLNQYYAAKKQS 481
                + +Y  AK+++
Sbjct: 459 QREQAIAKYEWAKEKA 474


>gi|15675407|ref|NP_269581.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           M1 GAS]
 gi|71911049|ref|YP_282599.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
 gi|13622594|gb|AAK34302.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           M1 GAS]
 gi|71853831|gb|AAZ51854.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
          Length = 469

 Score =  284 bits (726), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 186/493 (37%), Positives = 262/493 (53%), Gaps = 48/493 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEVRRD 120
           +K L          +C   D  + + D   C +Q +T+L       F   +     +R  
Sbjct: 59  RKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQ 108

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           K  +   ++ +   ++ D  L     I+N + Q YKV+TP+ + + QN  +     + + 
Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKVELS 167

Query: 181 AIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             R     TP ++ R    F D  +Q +       +Q     L +F ++++  Y   RD 
Sbjct: 168 QGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHANRDF 222

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295
           PA  GTS+LSP+L IG +  R  ++ +++        P S G  ++L EL WR+FY  + 
Sbjct: 223 PAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYNMVY 275

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP     +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRM
Sbjct: 276 VAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRM 334

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL KDLL DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QG
Sbjct: 335 IVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQG 394

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACH 468
           KRFDP+G FI+ +LP+L +VP +Y+H P   + KN        +  +YP PIVDH K   
Sbjct: 395 KRFDPKGEFIKAYLPQLEHVPEKYLHEPWK-MPKNLQESVSCIIGTDYPQPIVDHAKQRE 453

Query: 469 HTLNQYYAAKKQS 481
             + +Y  AK+++
Sbjct: 454 QAIAKYEWAKEKA 466


>gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
           5J108-111]
 gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
           5J108-111]
          Length = 452

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 174/440 (39%), Positives = 254/440 (57%), Gaps = 22/440 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR++DN AL  A  ++D  +I ++I   +Q +  G + R   +++ SL  +Q 
Sbjct: 4   IFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILD-DQLKMLGDAQRW--WLHHSLSSLQT 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +LS+KG      +       +E +  Y    +V K+++NR YE      D  LE RL   
Sbjct: 60  ALSKKGTSLILKKGDTKRVLLELIKKY----KVEKIYWNRSYEPPYREIDTYLENRLPP- 114

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRLT 185
           +  + +  ++L  P  I N +   YK++TPF K +  +L      + P       AI+  
Sbjct: 115 LSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRAIKSD 174

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              T + +P+  D+  Q  D   P GE+NA  +L+KF KE +  Y   RD P I  TS L
Sbjct: 175 NLETWNLLPKHPDWS-QGFDQWKP-GEKNAQIVLKKFIKENLKNYPAHRDRPDISSTSHL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           SPYL  G +S RQ W  + +  + D  ++  +  F  L +LIWREF  +L+  +P   MG
Sbjct: 233 SPYLHFGEISIRQVWTAITQATIQDKNLQKAADVF--LRQLIWREFAYYLLWHFPQ--MG 288

Query: 305 KP-FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           K  F    +  +W K+ + L+AW++G TG+PI+DA MR+L   G+MHNR RMI ASFLVK
Sbjct: 289 KSNFRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRARMIVASFLVK 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL++DWR GE++F + LLD DLA+N  GWQW A  G D+ PYFRIFNP +Q K+FDP GT
Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGLDAAPYFRIFNPILQSKKFDPDGT 408

Query: 424 FIRHWLPELNNVPTQYIHAP 443
           +I+ W+PEL  VP++YIH P
Sbjct: 409 YIKRWIPELAKVPSKYIHYP 428


>gi|332524149|ref|ZP_08400379.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
 gi|332107488|gb|EGJ08712.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
          Length = 505

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 180/492 (36%), Positives = 250/492 (50%), Gaps = 45/492 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR  DN ALY A   +  +V  VF+  PE       + R+  FI  S++ V  
Sbjct: 9   LVWLRRDLRTEDNAALYHALRAA-RRVWCVFVFDPEILEPLPRADRRVEFIRDSVVGVDA 67

Query: 71  SL---------SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            L            G++ ++ +       ++ +           ++ +   E   + RD 
Sbjct: 68  ELRALAASHGIDGAGLIVRHGR------PLQEIPRLAAALGAQAVYASHDDEPEALARDA 121

Query: 122 LLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +   L    I      D V+     +L      + V+TP+R A ++ L    L S PV 
Sbjct: 122 RVRGALADAGIAFHGSKDHVIFERDEVLTQGGGPFSVFTPYRNAWLKKLDDFYLSSYPVE 181

Query: 181 AIRLTGPVTP----SNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQ 233
             R  G + P      +P   D  F++ +      P G      +L  F  E+V +Y + 
Sbjct: 182 --RHAGALAPKPAGETLPTLADIGFESTNLHALKLPSGPAGGRELLADFL-ERVDHYADW 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA++G S L P+L  G +S R    RL  E    L     GA  WL+EL+WR+FY  
Sbjct: 239 RDFPAVKGPSYLGPHLRFGTVSIR----RLAREAHQRLTAGSRGAEVWLSELVWRDFYHQ 294

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           L+  +P V +G  F P  +++ W    H   L  AW +G TG+PI+DAAM QL   G+MH
Sbjct: 295 LLHHHPRV-VGGCFKPEYDRLHWEHGKHADELFAAWCEGRTGYPIVDAAMHQLTRTGYMH 353

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NRLRMI+ASFL KDL +DWR GE +F   L D DLASNNGGWQWAASTG D+ PYFRIFN
Sbjct: 354 NRLRMISASFLTKDLGIDWRRGEAWFARHLNDFDLASNNGGWQWAASTGCDAQPYFRIFN 413

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVD 462
           P  Q +RFDP+G FIR +LP+L  +P   +HAP  W  +          L  +YP P+V 
Sbjct: 414 PVSQSERFDPEGRFIRRYLPQLAKLPDTLLHAP--WRARPADLAAAGVVLGRDYPAPVVA 471

Query: 463 HKKACHHTLNQY 474
           H++A   TL ++
Sbjct: 472 HEEARERTLARF 483


>gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
 gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
          Length = 481

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 181/489 (37%), Positives = 260/489 (53%), Gaps = 47/489 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL  A  +S   V+ ++I   E      + A    ++  SL  + +
Sbjct: 16  IVWFRKDLRIADNPALRHAA-DSGRPVVCLYILD-ETPGVRPMGAASLWWLDKSLKSLAQ 73

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            L + G  +V +    ++       LD+   +   T + +NR Y+   V RD  ++ RL+
Sbjct: 74  ELEKLGNRLVLRKGVAADV------LDALIAETGATGVVWNRLYDKASVDRDATIKARLK 127

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------------VQAD 173
              V C+SF+  +L  P ++ N + Q YKV+TP+ +A  Q+L              +   
Sbjct: 128 EAGVDCQSFNAGLLNEPWTVQNGSGQPYKVFTPYWRAARQHLDDVTVEPAPKVLRCLDKA 187

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           +RS P+ A  L  P  P +  + FD        ++  GE  A   L  F    +  Y E+
Sbjct: 188 VRSEPLAAWDLH-PTRP-DWSKGFD--------LWTPGEAGARARLDAFLSGPITGYGEK 237

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCW--NRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           RDIP+   TS+LSP+L  G + PRQ W   R   E  D+   P + A  +L+EL WREF 
Sbjct: 238 RDIPSAPATSRLSPHLHFGEIGPRQVWLAARNAAEAGDI---PTAEADKFLSELGWREFN 294

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             ++  +P +   + F P  +   W KD    +AW +G TG+PI+DA MR+L T G+MHN
Sbjct: 295 HSILFHWPQLP-ARNFKPEFDGFPWAKDHAAFEAWTRGETGYPIVDAGMRELWTTGFMHN 353

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMI ASFL+K L++DWR GE +F   L+D DLA+N G WQW A +G D+ PYFRIFNP
Sbjct: 354 RVRMIVASFLIKHLMIDWREGEAWFWDTLVDADLANNVGNWQWTAGSGADAAPYFRIFNP 413

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN----YPLPIVDHKKAC 467
             QG++FDP+G ++R W+PEL  VP   IH P  W     LS      Y  PIVDH KA 
Sbjct: 414 ISQGEKFDPRGDYVRRWVPELKTVPDDVIHKP--WERPLHLSPAARRIYAKPIVDHAKAR 471

Query: 468 HHTLNQYYA 476
              L  Y++
Sbjct: 472 ERALEAYHS 480


>gi|94311677|ref|YP_584887.1| deoxyribodipyrimidine photo-lyase type I [Cupriavidus metallidurans
           CH34]
 gi|93355529|gb|ABF09618.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
           metallidurans CH34]
          Length = 513

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 191/499 (38%), Positives = 257/499 (51%), Gaps = 48/499 (9%)

Query: 11  LVWLRNDLRITDNKAL-YAACHNSDAKVIAVF---IATPEQWRQHGISA-RQSHFIYASL 65
           LVWLR DLR  DN AL YA  H      + VF   I  P   R  G+ A R+  FI  SL
Sbjct: 28  LVWLRRDLRTDDNAALHYALKHCRQVWCVFVFDREILAPLLAR--GLHADRRVEFILRSL 85

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             ++++L   G   IV           + + +     +  V  +F N  YE     RD+ 
Sbjct: 86  EPLRRALEDSGGGLIVLD-------GTARQAIPRLAAELEVEAVFANHDYEPAANDRDEA 138

Query: 123 LEKRL--QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           + + L    RV+  +F D V+     IL    + + V+TP++ A ++ +   DLR  P+ 
Sbjct: 139 VRRTLAADSRVLL-TFKDQVIFERDEILTGQGRPFSVFTPYKNAWLRTVRPFDLRPYPIE 197

Query: 181 AIRLTGPVTP----SNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQ 233
             + T    P      +P   D  F A +      P G   A  +  +F   ++  Y  +
Sbjct: 198 KHQETLAPVPQRYRGQLPTLADLGFTATNLAGIAMPTGSDGAHALFDEFLS-RIGDYGRR 256

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWREF 290
           RD PA++G S LS +L  G +S R     L     D +++  +   GA  WL+ELIWR+F
Sbjct: 257 RDFPAVRGPSYLSVHLRFGTISIRT----LARAAHDTMLRGGAASEGATVWLSELIWRDF 312

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           Y  ++  +P V  GK F    + + W           AW    TG+P+IDAAM Q+   G
Sbjct: 313 YFMILHHHPRVAEGKSFHAEYDGLRWIAPATGDRYFAAWCDARTGYPLIDAAMLQIRQSG 372

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+TASFLVKDL VDWR GE+YF  QL D DLA+NNGGWQWAASTG D+ PYFR
Sbjct: 373 YMHNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPYFR 432

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLP 459
           IFNP  Q ++FDPQG FIR +LP L  +P +YIHAP  W   N+        L  +YP P
Sbjct: 433 IFNPVTQSEKFDPQGQFIRRYLPMLAALPDRYIHAP--WTAPNEVLRAAGVTLGKDYPRP 490

Query: 460 IVDHKKACHHTLNQYYAAK 478
           IV H  A   TL +Y   K
Sbjct: 491 IVQHDVARKETLERYGVVK 509


>gi|19746457|ref|NP_607593.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232]
 gi|306827047|ref|ZP_07460345.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
           10782]
 gi|19748660|gb|AAL98092.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           MGAS8232]
 gi|304430793|gb|EFM33804.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
           10782]
          Length = 469

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 186/493 (37%), Positives = 262/493 (53%), Gaps = 48/493 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL A    S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKAL-AHVIASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEVRRD 120
           +K L          +C   D  + + D   C +Q +T+L       F   +     +R  
Sbjct: 59  RKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQ 108

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           K  +   ++ +   ++ D  L     I+N + Q YKV+TP+ + + QN  +     + + 
Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKVELS 167

Query: 181 AIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             R     TP ++ R    F D  +Q +       +Q     L +F ++++  Y   RD 
Sbjct: 168 QGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHANRDF 222

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295
           PA  GTS+LSP+L IG +  R  ++ +++        P S G  ++L EL WR+FY  + 
Sbjct: 223 PAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYNMVY 275

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP     +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRM
Sbjct: 276 VAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRM 334

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL KDLL DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QG
Sbjct: 335 IVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQG 394

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACH 468
           KRFDP+G FI+ +LP+L +VP +Y+H P   + KN        +  +YP PIVDH K   
Sbjct: 395 KRFDPKGEFIKAYLPQLEHVPEKYLHEPWK-MPKNLQESVSCIIGTDYPQPIVDHAKQRE 453

Query: 469 HTLNQYYAAKKQS 481
             + +Y  AK+++
Sbjct: 454 QAIAKYEWAKEKA 466


>gi|313634631|gb|EFS01103.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL N1-067]
          Length = 471

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 175/486 (36%), Positives = 261/486 (53%), Gaps = 43/486 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC + D  +I +F   PEQ+    I+   SH   ++S+   +
Sbjct: 4   VMWFRRDLRLNDNKALYQACRDKD-DLILLFQVNPEQF----INGSPSHQAFFSSVAYFK 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKL-LEK 125
           + L +       H    F + +  L+   L++++    K+++NR       +RD+  L+ 
Sbjct: 59  QKLDKTA-----HLQIMFGEPMGLLEK--LKEKIPAWDKVYFNRDETGYGAKRDEAALQF 111

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +  +   ++ D+ L     +   A   YKV+TP+ K       + +++  P+P    +
Sbjct: 112 FAKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYYKKW-----REEIKERPLPISLNS 166

Query: 186 GPVT-----PSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             V      P +  +F +   + + P+    +GEQ A + L  F KE +  Y E RD P 
Sbjct: 167 EKVNKTILFPEDEKQFVEMT-RELPPLDATKLGEQAAQNHLNYFVKENMADYNEARDFPD 225

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  TS LS +L  G +S R  W  ++E       +  +G  ++  EL WR+FY  +   +
Sbjct: 226 LDKTSHLSRFLRTGEVSIRTVWQAVQE------AEHTNGRATFEKELCWRDFYNMIYVSF 279

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P+    +        IEW  +    Q W+QG TGFP++DAAMRQL   GWMHNRLRMITA
Sbjct: 280 PN-QKNEAIQANYRFIEWENNRTNFQKWQQGVTGFPLVDAAMRQLKETGWMHNRLRMITA 338

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++F
Sbjct: 339 SFLTKDLLIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKF 398

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           DP G FIR ++ EL  +P ++IH P     +        +  +YP PIVDHK+     + 
Sbjct: 399 DPSGNFIRKYVQELAGLPDKFIHQPEKMTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIA 458

Query: 473 QYYAAK 478
           +Y  +K
Sbjct: 459 RYEFSK 464


>gi|296110301|ref|YP_003620682.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154]
 gi|295831832|gb|ADG39713.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154]
          Length = 478

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 185/491 (37%), Positives = 268/491 (54%), Gaps = 48/491 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR++DN AL  A  NSD K++ VF    +Q  +   +  QS F +AS+ Q++K
Sbjct: 6   VMWFRRDLRVSDNIALAHAVENSD-KILFVFHIDTQQLEKQP-TVNQSSF-FASVQQLKK 62

Query: 71  SLSQKGI---VFQYHQCSNFDDSIE-----WLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           SL ++ I   VF Y +  +  + I+     W D          L++NR        RD++
Sbjct: 63  SLKKQNINLYVF-YGELKDMFNHIKKQLPHWRD----------LYFNRDEHGYGGERDQV 111

Query: 123 LEKRLQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRK---ALIQ-NLVQADLRS 176
           + K  Q +  +   +  D  L     I       Y+V+TP+ K    L++ N +  DL +
Sbjct: 112 ITKYCQEKLNISVHATMDYNLHAAHDIKKADGHYYQVFTPYFKRWMTLVKSNPITIDLTN 171

Query: 177 LPVPAIRLTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           +    + ++     S +    D  + +  +D    IGE  A  IL  F + K+  Y + R
Sbjct: 172 ISQEHLTVSTLEQDSMLDALIDEKHSYAYVDQ---IGEDKARKILSDFIENKLTQYDQNR 228

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRH 293
           D+P++  TS LS YL  G +S R  +  +K+        P S G  +++ EL WR++Y  
Sbjct: 229 DVPSLDATSHLSRYLRTGEISIRVVYEGIKQA-------PDSDGRSTFIKELCWRDYYNM 281

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           + A +P         P   +I W  D      W+ G+TGFPI+DAAMRQLN  GWMHNRL
Sbjct: 282 IYATHPQQNES-AIRPEFRQIRWRDDKIGFDDWQTGHTGFPIVDAAMRQLNETGWMHNRL 340

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL KDLL++W+ GE YF  +L+D D ASN GGWQWAASTG DSVPYFRIFNPT+
Sbjct: 341 RMIVASFLTKDLLINWQWGENYFKQKLVDYDPASNIGGWQWAASTGTDSVPYFRIFNPTL 400

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKN----DLSLNYPLPIVDHKKAC 467
           Q K+FDPQG FI+ ++PEL  +P   IH P+  S +D+      +  +YP PIV+HK A 
Sbjct: 401 QSKKFDPQGLFIKKYIPELKRIPGAKIHEPNKLSSIDQKRYHISIGHDYPKPIVNHKTAR 460

Query: 468 HHTLNQYYAAK 478
            + +  Y  +K
Sbjct: 461 INAIAAYEKSK 471


>gi|16125677|ref|NP_420241.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus CB15]
 gi|221234432|ref|YP_002516868.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
 gi|13422791|gb|AAK23409.1| deoxyribodipyrimidine photolyase - classI [Caulobacter crescentus
           CB15]
 gi|220963604|gb|ACL94960.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
          Length = 483

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 179/483 (37%), Positives = 246/483 (50%), Gaps = 35/483 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQV 68
           +VW R DLRI DN AL  A   S   VI ++I   TP      G S     ++  SL  +
Sbjct: 18  IVWFRKDLRIADNPALRHAAQ-SGRPVIPLYILDETPGIRPMGGASL---WWLDKSLKSL 73

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL   G      +      + E LD    Q     + +NR Y+     RD  ++  L+
Sbjct: 74  AASLETLGTKLVLRKGV----AAEVLDQLIAQSGARSVVWNRLYDKPSTDRDAAIKAALR 129

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R V C+SF+  +L  P ++ N + Q YKV+TP+ +A  ++L    + + P         
Sbjct: 130 DRGVDCQSFNAGLLNEPWTVKNGSDQPYKVFTPYWRAAREHLTDVAVTAAPGHL------ 183

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI----------GEQNALHILRKFCKEKVYYYVEQRDIP 237
           V P+  P         + P  P           GE  A   L  F K  +  Y +QRDIP
Sbjct: 184 VAPARFPASESLASWNLHPTKPDWSKGFDLWTPGEAGAHARLDAFLKGPIKGYGDQRDIP 243

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            ++ TS+LSP+L  G + PRQ W   +    D    P + A  +L+E+ WREF   ++  
Sbjct: 244 GVEATSKLSPHLHFGEIGPRQVWLATRSA-ADQGDIPLAEADKFLSEIGWREFNHSILYN 302

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +     F P  +   W KD   L+AWK+G TG+PI+DA MR+L T G+MHNR+RMI 
Sbjct: 303 WPHMPSAN-FKPEFDGFPWVKDEGALEAWKRGQTGYPIVDAGMRELWTTGFMHNRVRMIV 361

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL+K L++DWR GE +F   LLD DLA+N G WQW A +G D+ PYFRIFNP  QG++
Sbjct: 362 ASFLIKHLMIDWREGEAWFWDTLLDADLANNVGNWQWTAGSGADAAPYFRIFNPIAQGEK 421

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN----YPLPIVDHKKACHHTLNQ 473
           FDP+G ++R W+PEL NV    IH P  W     L       Y  PIVDH  A    L  
Sbjct: 422 FDPKGDYVRRWVPELRNVSDDVIHKP--WTKPLHLPAGAKRLYSRPIVDHAMARARALEA 479

Query: 474 YYA 476
           Y+ 
Sbjct: 480 YHG 482


>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
 gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
          Length = 518

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 170/469 (36%), Positives = 256/469 (54%), Gaps = 26/469 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR++DN  L  A  +S +K++ +F    +   Q  ++  +  ++   L  +++
Sbjct: 48  IFWHRRDLRVSDNIGLSKAYQHS-SKLVGLFCLDTDILNQDNVAPARITYMLGCLQDLRE 106

Query: 71  SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           S  Q G   ++FQ +         + L   C+       F+N   E    +RD  + + L
Sbjct: 107 SYQQLGGQLLIFQGNPTQIIPQVADALKVDCV-------FWNNDVEPYSKKRDNQVIEAL 159

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQM-YKVYTPFRKALIQ----NLVQA--DLRSLPV 179
           Q R I  +++ D +L  PG IL  +    YKVYTPF ++ ++    N+ QA   L SL  
Sbjct: 160 QERGIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIAQALGKLESLSE 219

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             I     +   ++P   D  +    P+    GE  A   L  FC   +Y Y EQR+ P 
Sbjct: 220 EEINTVKNLGIIDLPTAKDLGYSWDAPLILEPGETAAKEQLNYFCDSLIYNYQEQRNYPG 279

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAF 297
           I GTS LSP    GV+  R+ W      + +    + +    +W  E+ WREFY+H M F
Sbjct: 280 INGTSTLSPAFKFGVIGIREVWQATLSAYENTYSDEARENIQTWQQEIAWREFYQHCMYF 339

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +  G P+    +   W+ +    QAW +G TG+PI+DAAMRQLN  GWMHNR RMI 
Sbjct: 340 FPELATG-PYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIV 398

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q ++
Sbjct: 399 ASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQK 457

Query: 418 FDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465
           +DP G +IR W+PE++++ T+Y +      L+ +  S  Y  PIVDHK+
Sbjct: 458 YDPDGEYIRLWVPEISSLDTEYLVTGKIPPLEAH--SCGYLQPIVDHKQ 504


>gi|224823842|ref|ZP_03696951.1| Deoxyribodipyrimidine photo-lyase [Lutiella nitroferrum 2002]
 gi|224604297|gb|EEG10471.1| Deoxyribodipyrimidine photo-lyase [Lutiella nitroferrum 2002]
          Length = 469

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 174/475 (36%), Positives = 258/475 (54%), Gaps = 40/475 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L W R DLR+ D+ ALYAA  +S+ +V+ VF+   +  +      R+  FI+ SL++
Sbjct: 3   TTALCWFRRDLRLDDHAALYAALRHSE-RVVCVFVFDRDILKHLPAQDRRVDFIWHSLVE 61

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +++ L   G   +V            ++ + +   +   + ++ +R YE     RD  + 
Sbjct: 62  LKEQLCALGSDLVVVS-------GRPVDCIPALAQEHGASTVWASRDYEPAACLRDAAVA 114

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-I 182
           +RL +H    ++  D V+     +L    + Y V+TP+R A ++ L    L++ P    +
Sbjct: 115 ERLSRHGTRLETVKDQVIFEQDEVLTVNSKPYTVFTPYRNAWLKKLTPFFLQAYPSTRYL 174

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  + +P   D  F            G   A  +   F  +++ +Y + RD PA 
Sbjct: 175 NRLARLAETPLPSLADLGFTDTGLGRLGIRAGMAGAAAVFTDF-GQRIEHYQQWRDFPAA 233

Query: 240 QGTSQLSPYLSIGVLSPRQ----CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +G S LS +L  G +S RQ     W            +  +GA +WL+ELIWREFY+ L+
Sbjct: 234 KGVSYLSVHLRFGTISIRQLAQFAWQ-----------QGSAGATTWLSELIWREFYQQLL 282

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP V + + F P   ++ +  D  L  AW  G TG+P++DAAMRQL   G+MHNRLRM
Sbjct: 283 WHYPHV-VEESFKPEYRQLGFPNDETLFAAWCAGRTGYPLVDAAMRQLAYSGYMHNRLRM 341

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TASFLVKDLLVDWR GE YF  +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q 
Sbjct: 342 VTASFLVKDLLVDWRWGERYFAEKLIDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQS 401

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-----DLSLNYPLPIVDHKK 465
           ++FDP+G FIR ++PEL  +  + IHAP  W  K       L  +YP PIVDH +
Sbjct: 402 QKFDPEGKFIRRYVPELAALDNKAIHAP--WQAKVLPGGFLLGRDYPRPIVDHAE 454


>gi|222111113|ref|YP_002553377.1| deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY]
 gi|221730557|gb|ACM33377.1| Deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY]
          Length = 488

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 176/481 (36%), Positives = 253/481 (52%), Gaps = 23/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLLQVQ 69
           LVWLR DLR  D+ ALY A    + +V  VF+   +          R+  FI+AS+  + 
Sbjct: 6   LVWLRRDLRCHDHAALYHALRRFE-RVYCVFVFDTDILDALLTRCDRRVEFIHASVCALD 64

Query: 70  ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
              ++L+ +              +++ +        V ++  NR YE   + RD+ +   
Sbjct: 65  EDLRALAARSGAPGGGLIVRHGTAVQCIVQLARSLGVREVLANRDYEPAALARDRRVADG 124

Query: 127 LQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AIR 183
           L    I  S + D VLL  G +LN   Q Y V+TP+++  +Q L     +  PV   A  
Sbjct: 125 LAACGIAFSDYKDQVLLEQGEVLNQLGQPYSVFTPYKRTWLQKLDAFQTKPYPVERHAHH 184

Query: 184 LTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           L  P     +P   D  F A    D   P+G + A  +L+ F      Y +  RD P  +
Sbjct: 185 LAVPPAGERLPTLADLGFVATNLADLQLPVGSRGAQQLLQDFLPHMAAYKLA-RDFPGRK 243

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S LS +L  G +S RQ  +    +      +   GA +WL+EL WR+FY  ++  +P 
Sbjct: 244 GVSYLSVHLRFGTVSIRQLASLAARQAA----QGCEGAQTWLSELAWRDFYFMILWHHPH 299

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V + + F P  ++++W+      QAW    TG+P++DAAMRQL   G+MHNRLRM+ ASF
Sbjct: 300 V-VTQAFRPEYDRVQWDDAPEYWQAWCAARTGYPLVDAAMRQLLQTGYMHNRLRMVVASF 358

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL +DWR GE +F   L D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q ++FDP
Sbjct: 359 LTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVAQSQKFDP 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQY 474
            G FIR +LPEL  VP +++H P S            L ++YPLP+VDH  A   TL ++
Sbjct: 419 DGRFIRRYLPELACVPDKHLHFPASMKPLELQACGLRLGIDYPLPVVDHASARERTLMRF 478

Query: 475 Y 475
           +
Sbjct: 479 H 479


>gi|299534052|ref|ZP_07047404.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
 gi|298717961|gb|EFI58966.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
          Length = 490

 Score =  283 bits (724), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 184/497 (37%), Positives = 264/497 (53%), Gaps = 31/497 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR DLR+ DN ALY A    + K+  VF+           + R+  FI  SL ++
Sbjct: 1   MGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILATLPHADRRVEFICQSLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +     Q    +      + + +   Q     +F N   E   + RD  + + L+
Sbjct: 60  DAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDAQVARSLK 119

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRL 184
            +  +   F D  +     +L  +L  + V+TP++ A ++ +    L + P     A +L
Sbjct: 120 SQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERDLASKL 179

Query: 185 TG-PVTPSN-IPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              P +    IP   D  F A D +     P G   A  +L  F   ++  Y   RD PA
Sbjct: 180 ADLPDSERRPIPTAADLGF-APDTLAGLRLPTGVSGARQLLADFLP-RLPQYKTARDFPA 237

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV---DLLIKPKSGAFSWLNELIWREFYRHLM 295
           ++G S LS +L  G +S R+   RL  E     D     + GA +WL+ELIWR+FY  ++
Sbjct: 238 LKGPSYLSVHLRFGTVSIREL-ARLAHEAAHNEDWSAAAREGAATWLSELIWRDFYFQIL 296

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           A  P V + + F P  + IEW   +    L  AW +G TG+P++DAAMRQLN+ G+MHNR
Sbjct: 297 AHQPYV-VERSFKPAYDAIEWETGAEADPLFAAWCEGRTGYPLVDAAMRQLNSSGYMHNR 355

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+TASFLVKDL +DWR GE YF  +L D DLA+NNGGWQWAASTG D+ P+FRIFNP 
Sbjct: 356 LRMVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPV 415

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHK 464
            Q ++FDP G FI  ++PE+  +P++  HAP  WL K          L  +YPLP+VDH 
Sbjct: 416 TQSEKFDPDGKFIARYVPEVAQLPSKLRHAP--WLAKPLELAEAGIALGRDYPLPVVDHA 473

Query: 465 KACHHTLNQYYAAKKQS 481
            A   TL +Y   KK++
Sbjct: 474 AAREKTLARYGILKKEA 490


>gi|21910695|ref|NP_664963.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           MGAS315]
 gi|28895615|ref|NP_801965.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1]
 gi|21904898|gb|AAM79766.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           MGAS315]
 gi|28810864|dbj|BAC63798.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           SSI-1]
          Length = 469

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 185/492 (37%), Positives = 263/492 (53%), Gaps = 46/492 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNNEQLNLLH-SRNQSSFI-TSVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEVRRD 120
           +K L          +C   D  + + D   C +Q +T+L       F   +     +R  
Sbjct: 59  RKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQ 108

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           K  +   ++ +   ++ D  L     I+N + Q YKV+TP+ + + QN  +     + + 
Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKVELS 167

Query: 181 AIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             R     TP ++ R    F D  +Q +       +Q     L +F ++++  Y   RD 
Sbjct: 168 QGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHANRDF 222

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295
           PA  GTS+LSP+L IG +  R  ++ +++        P S G  ++L EL WR+FY  + 
Sbjct: 223 PAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYNMVY 275

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP     +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRM
Sbjct: 276 VAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRM 334

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL KDLL DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QG
Sbjct: 335 IVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQG 394

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP---HSWLDKND---LSLNYPLPIVDHKKACHH 469
           KRFDP+G FI+ +LP+L +VP +Y+H P     +L ++    +  +YP PIVDH K    
Sbjct: 395 KRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQ 454

Query: 470 TLNQYYAAKKQS 481
            + +Y  AK+++
Sbjct: 455 AIAKYEWAKEKA 466


>gi|313639222|gb|EFS04159.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL S4-171]
          Length = 471

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 174/483 (36%), Positives = 260/483 (53%), Gaps = 37/483 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC + D  +I +F   PEQ+    I+   SH   ++S+   +
Sbjct: 4   VMWFRRDLRLNDNKALYQACRDKD-DLILLFQVNPEQF----INGSPSHQAFFSSVAYFK 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKL-LEK 125
           + L +       H    F + +  L+   L++++    K+++NR       +RD+  L+ 
Sbjct: 59  QKLDKIA-----HLQIMFGEPMGLLEK--LKEKIPAWDKVYFNRDETGYGAKRDEAALQF 111

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AIR 183
             +  +   ++ D+ L     +   A   YKV+TP+ K   + + +   R LP+   + +
Sbjct: 112 FAKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYYKKWREEIKE---RPLPISLNSEK 168

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +   +      + F    + + P+    +GEQ A + L  F KE +  Y E RD P +  
Sbjct: 169 VNKTILFPEEEKQFAEMTRELPPLDATKLGEQAAQNHLNHFVKENLADYNEARDFPDLDK 228

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LS +L  G +S R  W  ++E       +  +G  ++  EL WR+FY  +   +P+ 
Sbjct: 229 TSHLSRFLRTGEVSIRTVWQAVQE------AEHTNGRATFEKELCWRDFYNMIYVSFPN- 281

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +        IEW  +    Q W+QG TGFP++DAAMRQL   GWMHNRLRMITASFL
Sbjct: 282 QKNEAIQANYRFIEWENNRTNFQKWQQGITGFPLVDAAMRQLKETGWMHNRLRMITASFL 341

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP 
Sbjct: 342 TKDLLIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPS 401

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           G FIR ++ EL  +P ++IH P     +        +  +YP PIVDHK+     + +Y 
Sbjct: 402 GNFIRKYVQELAGLPDKFIHQPEKMTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYE 461

Query: 476 AAK 478
            +K
Sbjct: 462 FSK 464


>gi|296805628|ref|XP_002843638.1| deoxyribodipyrimidine photo-lyase [Arthroderma otae CBS 113480]
 gi|238844940|gb|EEQ34602.1| deoxyribodipyrimidine photo-lyase [Arthroderma otae CBS 113480]
          Length = 591

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 169/486 (34%), Positives = 246/486 (50%), Gaps = 51/486 (10%)

Query: 13  WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W ++DLR+ DN++L   Y+   N D  +I ++I +PE    H  S  +   I  +L  ++
Sbjct: 102 WFKSDLRLQDNRSLHKAYSLARNYDIPLICIYIFSPEDLTAHLCSRPRVDLILRTLAILK 161

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128
             L ++ I           D  + +   C Q    ++F N +YE++E+RR+ K++    +
Sbjct: 162 SDLEKQDIPLYMETQEKRKDIPKRIVELCKQWGANQIFTNLEYEVDELRREAKIVRLCAR 221

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTG 186
             +I  + DD+ ++ PG +     + Y VYTP+ ++ +  L++   +L  +  P  R  G
Sbjct: 222 QGIIFDTEDDTCVVAPGDLSTQQGKQYAVYTPWYRSWVAFLMEHPENLELVDAPT-RNAG 280

Query: 187 --------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                         P  P+ + +  D   Q    M+P GE  A   L++F  ++   Y E
Sbjct: 281 DARKHFEELFHSQVPEAPTYM-QLSDSESQRFREMYPAGEHEADRRLKEFLAKRGNQYHE 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD  + Q TS LSPY S G LS R      +E  V                        
Sbjct: 340 NRDFMSSQTTSVLSPYFSCGSLSARAAICMAQEANV------------------------ 375

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                +P +CM K   P    +EW  D     AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 376 ----HWPYICMNKCLNPEFTNLEWEYDLAQFNAWCEGKTGFPIVDAAMRQLKHSAWMHNR 431

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR+GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 432 TRMIVSSFLSKDLLIDWRLGEQFFMKHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 491

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IRHW+PEL N+    IH P+    +     N YP PIV+H ++    L
Sbjct: 492 RQSERFDPNGDYIRHWVPELRNIEGSAIHDPYGRGARETAEKNGYPRPIVNHSESRSKAL 551

Query: 472 NQYYAA 477
            +Y  A
Sbjct: 552 ERYKKA 557


>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
 gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
          Length = 476

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 167/472 (35%), Positives = 262/472 (55%), Gaps = 26/472 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ + W R DLR++DN  L  A   S +K++ +F        +  I+  + +++   L  
Sbjct: 3   NIIIFWHRRDLRVSDNIGLSQAYQKS-SKLVGLFCLDSNLLNRDDIAPARVNYMLGCLQH 61

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +QKS  + G   ++FQ           + L+  C+       F+N   E     RDK ++
Sbjct: 62  LQKSYQKLGSQLLIFQGEPTKIIPKVADALNVDCV-------FWNNDVEPYSKERDKQVK 114

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQM-YKVYTPFRKALIQ----NLVQA--DLRS 176
           + L+ + I  K++ D +L  PG IL  +    YKVYTPF ++ ++    ++V++   L S
Sbjct: 115 EALEEKSIQSKTYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEEKADIVESIEKLES 174

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235
           L    I     +   ++P   D  +    P+    GE  A   L  F    +Y Y EQR+
Sbjct: 175 LSDEEINTVKDLGLIDLPTAKDLGYSWDAPLLLEPGETAAKEQLNYFSDNAIYSYQEQRN 234

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHL 294
           +PAI  TS+LSP    G++  R+ W    E + +    + +    +W  E+ WREFY+H 
Sbjct: 235 LPAIDATSKLSPAFKFGIIGIREVWQATVEAYENTRSDEARENIQTWQQEIAWREFYQHC 294

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           + F+P +  G P+    ++  W+ +    QAW +G TG+PI+DAAMRQLN  GWMHNR R
Sbjct: 295 LYFFPELAEG-PYRDEFKEFPWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCR 353

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q
Sbjct: 354 MIVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQ 412

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKK 465
            +++DP G +IR W+PE++++ T+  +      L+ +  S  YP PIVDHK+
Sbjct: 413 AQKYDPDGEYIRLWVPEISSLDTECLVTGKIPPLEAH--SCGYPQPIVDHKQ 462


>gi|317406109|gb|EFV86370.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans C54]
          Length = 277

 Score =  282 bits (722), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 135/272 (49%), Positives = 177/272 (65%), Gaps = 3/272 (1%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
           AI  ++P GE  A   L  F    +  Y ++RD P++  TS LSPYL+ GVLSP Q    
Sbjct: 3   AIRALWPAGESAAGARLDAFADGVIDAYRDERDFPSLPATSCLSPYLAAGVLSPGQALRA 62

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
                   L   K+GA +W+NEL+WREFY+HL+A  P++ M +P  P T  + W      
Sbjct: 63  ALAANQGELESGKAGAATWINELLWREFYQHLLAACPALSMHQPMKPETAAVPWRDAPDD 122

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L+AW+QG TG PI+DAAMRQL  +GWMHNRLRM+TA FL K+LL+DWR+GE +FM+ L+D
Sbjct: 123 LRAWQQGRTGLPIVDAAMRQLLALGWMHNRLRMVTAMFLTKNLLIDWRLGEAWFMAHLVD 182

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
           GDLA+NNGGWQW+ASTG DSVPYFR+FNP  Q ++FDP+G F+R WLPEL ++    IH 
Sbjct: 183 GDLAANNGGWQWSASTGADSVPYFRVFNPLSQSRKFDPRGVFLREWLPELAHLDDNAIHD 242

Query: 443 PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           P         +  YP PIVD  ++    L  +
Sbjct: 243 PSP---MERAAAGYPAPIVDLPQSRLRALEAF 271


>gi|113867687|ref|YP_726176.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
 gi|113526463|emb|CAJ92808.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
          Length = 513

 Score =  282 bits (722), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 189/501 (37%), Positives = 260/501 (51%), Gaps = 50/501 (9%)

Query: 11  LVWLRNDLRITDNKAL-YAACHNSDAKVIAVF---IATPEQWRQHGISARQSHFIYASLL 66
           LVW R DLR  D+ AL YA  H      + VF   I  P   R   +  R+  FI  SL 
Sbjct: 29  LVWFRRDLRADDHAALHYALKHCRQVWCVFVFDREILDPLIARGRKVD-RRVEFILRSLE 87

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            ++++L+  G   IV         D + + +     +     +F N  YE    RRD  +
Sbjct: 88  PLRRTLTDAGGGLIVLD-------DIARDAIPRLAAELDADAVFTNHDYEPAAKRRDTAV 140

Query: 124 EKRL--QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            + L    RV+  +F D V+     +L    Q + V+ P++ A ++ +   DLR  P P 
Sbjct: 141 RQALASDSRVLF-TFKDQVIFEADELLTGQGQPFSVFAPYKNAWLRAVQPFDLR--PYPV 197

Query: 182 IRLTGPVTP------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVE 232
            +  G + P         P   D  F A    +   P G   A  +  +F  +++  Y  
Sbjct: 198 DQYLGALAPVPRQYQKASPMLHDLGFAASNLAEIAMPTGSDGARALFDEFI-DRIGDYGY 256

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWRE 289
           +RD P+++G S LS +L  G +S R     L    +D +++  S   GA  WL+ELIWR+
Sbjct: 257 RRDFPSLRGPSYLSVHLRFGTISIRT----LARAALDAVLRGGSESAGAAVWLSELIWRD 312

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           FY  ++  +P V  GK F P  + ++W          QAW    TG+P++DAAM Q+   
Sbjct: 313 FYFMILHHHPRVADGKSFRPEYDALQWVDSVTGDKYFQAWCDAQTGYPLVDAAMLQIRQS 372

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+TASFLVKDL VDWR GE+YF  QL D D ++NNGGWQWAASTG D+ PYF
Sbjct: 373 GYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDFSANNGGWQWAASTGCDAQPYF 432

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPL 458
           RIFNP  Q ++FDPQG FIR +LP L  +P QYIHAP  W    +        L  NYP 
Sbjct: 433 RIFNPVKQSEKFDPQGRFIRKYLPVLAQMPDQYIHAP--WTAPVNVLATAGVKLGENYPP 490

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
           PIV H+ A   TL +Y A +K
Sbjct: 491 PIVQHEVARKQTLERYAAIRK 511


>gi|302498692|ref|XP_003011343.1| hypothetical protein ARB_02402 [Arthroderma benhamiae CBS 112371]
 gi|291174893|gb|EFE30703.1| hypothetical protein ARB_02402 [Arthroderma benhamiae CBS 112371]
          Length = 565

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 173/489 (35%), Positives = 243/489 (49%), Gaps = 45/489 (9%)

Query: 13  WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR+ DN++L+ A     + +  +I ++I +PE    H  S  +   I  +L  ++
Sbjct: 102 WFKQDLRLQDNRSLHRAYNFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRTLATLK 161

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128
             LS+K I                +   C     + LF N +YE++E+RR+ KL      
Sbjct: 162 SGLSKKDIPLYMESIKRRKRIPSRIVELCKTWGASHLFANIEYEVDELRREAKLTRLCAT 221

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTG 186
             +I  S DD+ ++ PG +     + Y VYTP+ ++ +  L Q   +L  +  PA+    
Sbjct: 222 QGIIFDSEDDACVVAPGELSTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNAGD 281

Query: 187 -------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                        P+ P+ + +  +   +    M+P GEQ A   LR+F  EK   Y  +
Sbjct: 282 ARKHFKDLFDSAVPIAPNQM-KLSEAEQERFKKMYPEGEQEATRRLREFLSEKGKQYHSK 340

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD  + Q TS LSPY S G LS R        +   L+I   S +               
Sbjct: 341 RDFMSSQFTSVLSPYFSCGALSARTAPFIEAMKLCGLVITDDSSS--------------- 385

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                    M K F P    +EW  DS    AW +G TGFPI+DAAMRQL    WMHNR 
Sbjct: 386 ---------MNKCFKPEFTDLEWEYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNRT 436

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP  
Sbjct: 437 RMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLR 496

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472
           Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L 
Sbjct: 497 QSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAEEIAEKNGYPRPIVNHTESRERALE 556

Query: 473 QYYAAKKQS 481
           +Y  A   S
Sbjct: 557 KYKKAAHGS 565


>gi|187921432|ref|YP_001890464.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
 gi|187719870|gb|ACD21093.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
          Length = 499

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 179/503 (35%), Positives = 262/503 (52%), Gaps = 49/503 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISA--- 55
           +    LVW R DLR TDN ALY A  + + +V  VF+          E W+         
Sbjct: 10  SFDTGLVWFRRDLRSTDNAALYYALKHCE-RVWCVFVFDTTILQPLVEAWQARHPDTQPQ 68

Query: 56  -RQSHFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
            R+   I  +L ++ ++L   G   IV        + D  + +     +  V  +F N  
Sbjct: 69  DRRIELILGALGELDEALRANGGGLIVL-------YGDPADLVPKLADELGVDAVFANHD 121

Query: 112 YEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
           YE   + RD+ + + L +      +F D V+     +L    + + V+TP++ A ++ L 
Sbjct: 122 YEPVAIARDETVRETLAEAGRQWLTFKDQVIFERDEVLTGQNKPFTVFTPYKNAWLKQLT 181

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNALHILRKFC 223
             DL+  PV +        PS + R           P    +   P G   A  +L  F 
Sbjct: 182 AFDLKPYPVESYTKHLAAPPSKLDRRLPTLDQLGFAPSNLAELDLPAGMSGAQRLLDDFA 241

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWL 282
             ++  Y ++RD PA +G S LS +L  G +S R    RL  E   + ++P   G+ +WL
Sbjct: 242 T-RIDSYKDRRDFPAAKGPSYLSIHLRFGTVSIRTL-ARLAHE---MSLQPDGEGSTTWL 296

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAA 339
           +ELIWR+FY  ++A +P +  G  F    +++ W +         AW  G TG+P++DAA
Sbjct: 297 SELIWRDFYFMILAHHPRLANGASFKEEYDQLRWEQGPEADEAFAAWCDGRTGYPLVDAA 356

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           M QLN  G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D ++NNGGWQWAASTG
Sbjct: 357 MLQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAQQLNDFDFSANNGGWQWAASTG 416

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-------- 451
            D+ PYFRIFNP  Q ++FD +G FI+ +LP+L  +P+++IHAP  WL   +        
Sbjct: 417 CDAQPYFRIFNPITQSEKFDAEGRFIKRYLPQLARLPSKWIHAP--WLAGTERLAEFGVV 474

Query: 452 LSLNYPLPIVDHKKACHHTLNQY 474
           L  +YP PIVDH +A   TL ++
Sbjct: 475 LGKDYPAPIVDHAEARARTLARF 497


>gi|746118|prf||2017201A DNA photolyase
          Length = 486

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 178/487 (36%), Positives = 252/487 (51%), Gaps = 56/487 (11%)

Query: 8   SVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           S+  VW R D R+ D+ AL     A      K +A F   P   +   +      + + +
Sbjct: 12  SLKAVWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP---KTASVEPVHHDYFFQT 68

Query: 65  LLQVQKSLSQKGI-------VFQYHQCSNFDDSIEWLDS-YCLQQRVTKLFYNRQYEINE 116
           ++Q ++ L   G          +  Q S    +   +D+ Y    RV           + 
Sbjct: 69  VMQFKQMLKTNGGDLYIITGTIEGGQLSKLLQAFPEIDAVYANDDRVG----------DG 118

Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------L 169
             RD+  E  L  + I   +F+D+ L  P  +L      YKV+TP+ KA  +       +
Sbjct: 119 RLRDEAAEHFLAKQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAV 178

Query: 170 VQADLRSLPVPAIRLTGPVTPS-----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
           ++ D+  L     + T P   +     N+ +   Y + A      IGE++A+  L+ F K
Sbjct: 179 IKRDV--LLGSVHKGTAPDREAETLFNNLIKKCSYDWSA------IGEEHAIKRLQMFTK 230

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           +++  Y   RD P+I GTS+LSPY+  G +S R  +  +     D        A ++L E
Sbjct: 231 KRLSGYKANRDFPSITGTSRLSPYIKTGAVSSRSIYYHILNAEAD-----SYSAETFLKE 285

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WR+FYR ++ FY   C  +  +    ++ W+ D   L +WK+G TGFPI+DA MRQL 
Sbjct: 286 LAWRDFYR-MVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLL 344

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             GWMHNRLRMITASFL KDLL+DWR+GE YF   L+D D +SN GGWQWAAS G D+VP
Sbjct: 345 NEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVP 404

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458
           YFRIFNP  Q KRFD  GT+IR ++PELN+VP  YIH P    ++        L  +YPL
Sbjct: 405 YFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPL 464

Query: 459 PIVDHKK 465
           PIVDH K
Sbjct: 465 PIVDHSK 471


>gi|121594169|ref|YP_986065.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42]
 gi|120606249|gb|ABM41989.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42]
          Length = 488

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 177/487 (36%), Positives = 252/487 (51%), Gaps = 35/487 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGISARQSHFIYA 63
           LVWLR DLR  D+ ALY A    + +V  VF+       A P +        R+  FI+A
Sbjct: 6   LVWLRRDLRCHDHAALYHALRRFE-RVYCVFVFDTDILDALPTR------CDRRVEFIHA 58

Query: 64  SLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           S+  +    ++L+ +              +++ +        V ++  NR YE   + RD
Sbjct: 59  SVCALDEDLRALAARSGAPGGGLIVRHGTAVQCIVQLARSLGVREVLANRDYEPAALARD 118

Query: 121 KLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + +   L    I  S + D VLL  G +LN   Q Y V+TP+++  +Q L     +  PV
Sbjct: 119 RRVADGLAACGIAFSDYKDQVLLEQGEVLNQQGQPYSVFTPYKRTWLQKLDAFQTKPYPV 178

Query: 180 P--AIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
              A  L  P     +P   D    P    D   P+G + A  +L+ F      Y +  R
Sbjct: 179 ERHAQHLAVPPAGERLPTLADLGFVPTNLADLQLPVGSRGAQQLLQDFLPRMAAYKLA-R 237

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P  +G S LS +L  G +S RQ    L         +   GA +WL+EL WR+FY  +
Sbjct: 238 DFPGRKGVSYLSVHLRFGTVSIRQ----LASLAARQAAQGCQGAQTWLSELAWRDFYFMI 293

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P V + + F P  ++++W+      QAW    TG+P++DAAMRQL   G+MHNRLR
Sbjct: 294 LWHHPHV-VTQAFRPEYDRVQWDDAPEYWQAWCAARTGYPLVDAAMRQLLQTGYMHNRLR 352

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL KDL +DWR GE +F   L D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q
Sbjct: 353 MVVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVAQ 412

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACH 468
            ++FDP G FIR +LPEL  VP +++H P              L ++YPLP+VDH  A  
Sbjct: 413 SQKFDPDGRFIRRYLPELACVPDKHLHFPAGMKPLELQACGLRLGIDYPLPVVDHASARE 472

Query: 469 HTLNQYY 475
            TL +++
Sbjct: 473 RTLMRFH 479


>gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
           Alcoy]
 gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 471

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 176/491 (35%), Positives = 267/491 (54%), Gaps = 41/491 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  +I ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHET-IIPLYIYDD---KCSVLGQAQAWWLHHSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     + S  +  +E +  Y L+     +++NR YE   + RDK ++  
Sbjct: 57  ALGKSLNQQGLSLVLRKGSPLEIILELVTQYGLE----SVYWNRCYEPQVIARDKKIKLA 112

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  + I   SF+ ++L  P +I N     +KV+TP+ K   Q L      ++P P +   
Sbjct: 113 LGEKGIKVHSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL------NIPSPFMLTK 166

Query: 186 GP----VTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            P    +T  ++ ++   P           +  GE+ A   L +F    +  Y  +RD P
Sbjct: 167 RPRGIEITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLNEFVVHHLSGYKRERDFP 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           A   TS+LSP+L  G +SP      L+    E+  DL     +    +L+EL WREF  +
Sbjct: 227 AKNATSRLSPHLHFGEISPWVILRALELAKLEQTCDL-----ASLEHFLSELGWREFSVY 281

Query: 294 LMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           L+  +P + C  + F    +   W  D  LL  W++G TG+PIIDA MR+L   G+MHNR
Sbjct: 282 LLYHFPKLDC--ENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNR 339

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI ASFL KDLL+DWR G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP 
Sbjct: 340 VRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPV 399

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----NYPLPIVDHKKACH 468
           +Q ++FDP G +IR W+PEL  + +Q IH P  W D N  S+     YP PI+DH++A  
Sbjct: 400 LQSQKFDPDGVYIRQWIPELAQLNSQSIHQP--WTDANASSIFLGKKYPKPIIDHQEART 457

Query: 469 HTLNQYYAAKK 479
             L+ Y   KK
Sbjct: 458 KALSYYQQIKK 468


>gi|289433865|ref|YP_003463737.1| hypothetical protein lse_0498 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170109|emb|CBH26649.1| phrB [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 471

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 174/484 (35%), Positives = 260/484 (53%), Gaps = 39/484 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC + D  +I +F   PEQ+    I+   SH   ++S+   +
Sbjct: 4   VMWFRRDLRLNDNKALYQACRDKD-DLILLFQVNPEQF----INGSPSHQAFFSSVAYFK 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKL-LEK 125
           + + +       H    F + +  L+   L++++    K+++NR       +RD+  L+ 
Sbjct: 59  QKVDETA-----HLQIMFGEPMGLLEK--LKEKIPAWDKVYFNRDETGYGAKRDEAALQF 111

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV---PAI 182
             +  +   ++ D+ L     +   A   YKV+TP+ K   + + +   R LP+   P  
Sbjct: 112 FAKEEIEVFAYHDAYLHHADDVKKSATDFYKVFTPYYKKWREEIKE---RPLPISINPEK 168

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                + P +  +F +   + + P+    +GE  A   L  F KE +  Y E RD P + 
Sbjct: 169 VNNTILFPEDEKQFVEMT-RELPPLDATKLGELAAQSHLNHFVKENLADYNEARDFPDLD 227

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS LS +L  G +S R  W  ++E       +  +G  ++  EL WR+FY  +   +P+
Sbjct: 228 KTSHLSRFLRTGEVSIRTVWQAVQE------AEHTNGRATFEKELCWRDFYNMIYVSFPN 281

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +        IEW  +    Q W+QG TGFP++DAAMRQL   GWMHNRLRMITASF
Sbjct: 282 -QKNEAIQANYRFIEWENNRTNFQKWQQGATGFPLVDAAMRQLKETGWMHNRLRMITASF 340

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP
Sbjct: 341 LTKDLLIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDP 400

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474
            G FIR ++ EL  +P ++IH P    ++        +  +YP PIVDHK+     + +Y
Sbjct: 401 SGNFIRKYVQELAGLPDKFIHQPEKMTNQEQEKFHLIIGEDYPFPIVDHKERRKLAIARY 460

Query: 475 YAAK 478
             +K
Sbjct: 461 EFSK 464


>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
 gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
          Length = 491

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 252/493 (51%), Gaps = 32/493 (6%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W R DLR+ DN AL  A   S  +VI +FI              +  F+ A+L  +  SL
Sbjct: 6   WFRRDLRLRDNPALSGAAARSGGRVIPLFILDDAILHAPRTGMARVAFMIAALRDLDASL 65

Query: 73  SQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
             +G  +V +  + S+       L           + +NR Y     +RD+ +E  L+  
Sbjct: 66  RARGSRLVVRRGRPSDV------LRDLVGATGAVGVSWNRDYTPFARQRDQHIEAMLRDL 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADLRSLPVPAIR-LT 185
            V      D+V++ P  +     + Y VYTP+R+   AL++      LR+   P ++ + 
Sbjct: 120 NVATFIAADAVIMEPDDVRTDDGRPYTVYTPYRRRWRALVEQRRDDVLRAYEPPVLQPVP 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY----YVEQRDIPAIQG 241
             V    IP   D     I  +   GE      L  F   +  +    Y + R++ A   
Sbjct: 180 DGVADLPIPDNPDLDVSVIQRIPAGGETTGAARLAAFLDPRATHGIAGYADGRNLLAEPA 239

Query: 242 TSQLSPYLSIGVLSPRQCW-------NRLKEE-FVDLLIKPKSGAFSWLNELIWREFYRH 293
           TS+LSPYL  G ++PR          +R  EE   +          +W+ EL WR+FY  
Sbjct: 240 TSRLSPYLRFGCVAPRAALRAALNLLDRAGEEQDAECAATLTRSIETWIGELAWRDFYYQ 299

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P V +   F P  + +EW  D  L  AWK+G TG+P++DAAMRQLN   WMHNR 
Sbjct: 300 ILWHHPHV-LRSAFKPQYDALEWENDPALFDAWKEGRTGYPVVDAAMRQLNREAWMHNRA 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL KDLL+DWR GE YFM QL+DGD A+NNGGWQW+A TG D+ PYFRIFNP  
Sbjct: 359 RMIVASFLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVS 418

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS--WLDKNDLSL----NYPLPIVDHKKAC 467
           QG+ FDP+G ++R +LPEL  VP +YIHAP +  + ++    +    +YP P+VDH +  
Sbjct: 419 QGQTFDPKGAYVRRYLPELEAVPDRYIHAPWTMPYAEQQRCGVIIGRDYPAPVVDHAERR 478

Query: 468 HHTLNQYYAAKKQ 480
              L  Y A   +
Sbjct: 479 ARALALYRAVSSR 491


>gi|118594490|ref|ZP_01551837.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
           HTCC2181]
 gi|118440268|gb|EAV46895.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
           HTCC2181]
          Length = 465

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 175/489 (35%), Positives = 253/489 (51%), Gaps = 47/489 (9%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASLLQVQK 70
           +W R DLR+ DN AL+ A   SD  V  VFI              Q   FI+ +L +++ 
Sbjct: 1   MWFRRDLRLHDNHALHHALSQSD-NVYCVFIFDKNILNDLKSKEDQRIEFIWEALSEMKA 59

Query: 71  SL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128
           SL S    +   H      D I  +     +     LF+N+ YE    +RD +++E   Q
Sbjct: 60  SLNSLSSDITVIH-----GDPIHAIPLLLKKYDCEALFFNKDYESYANKRDMRIMEHIQQ 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFR---------KALIQNLVQADLRSLPV 179
                  F D+VL     IL+ A + Y V++P++         K + Q   + + RS   
Sbjct: 115 SSADAYQFKDTVLFEEKEILSQADKPYTVFSPYKNNHLAKLYQKGITQYDCENNKRSFAK 174

Query: 180 PAIRL-----TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
             I       +   T +N+ +             P G      +L  F K ++  Y  +R
Sbjct: 175 IKIEKLLSLDSLGFTKTNLSKL----------AIPTGSSGGRSLLLDFEK-RIDQYKLKR 223

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P  +G S LS +   G +S       ++E+ +  + K   G+  WLNELIWR+FY  +
Sbjct: 224 DYPGKKGVSYLSVHNRFGTIS-------IREQALIAINKQSEGSLVWLNELIWRDFYFQI 276

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           ++ +P +  GK F P   ++ +  +    +AWK G TGFPIIDAAM QLN  G+MHNRLR
Sbjct: 277 LSNFPHINDGKSFKPQFNQLRFENNVTFFEAWKNGRTGFPIIDAAMHQLNKTGFMHNRLR 336

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFLVKDLL+DWR GE YF  +L+D D ++NNGGWQWAASTG D+ P+FRIFNP +Q
Sbjct: 337 MIVASFLVKDLLIDWRWGESYFAEKLIDFDFSANNGGWQWAASTGCDAQPWFRIFNPLLQ 396

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACH 468
            ++FDP+G FI+ +LP+L  +  + IH PH + +K+       L  +YP PI+DH     
Sbjct: 397 SEKFDPEGLFIKKYLPQLTPLSAKEIHRPHFFYEKDPDTFKVKLGEDYPFPIIDHAIQRQ 456

Query: 469 HTLNQYYAA 477
             L+ Y A 
Sbjct: 457 KALSMYQAT 465


>gi|241662182|ref|YP_002980542.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
 gi|240864209|gb|ACS61870.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
          Length = 518

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 183/496 (36%), Positives = 254/496 (51%), Gaps = 45/496 (9%)

Query: 11  LVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATP-EQWRQHGISA-RQSHFIYASLLQ 67
           LVW R DLR  D+ AL YA  H  +   + VF     +     G+ A R+  FI AS+ +
Sbjct: 21  LVWFRRDLRHVDHAALHYALRHCREVYCVFVFDRDILDALLARGLKADRRVEFIRASIEE 80

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           ++ +L + G   IV   H           +     Q  V  +F N   E +   RD+ + 
Sbjct: 81  LRGALREAGGDLIVVHDHPRHA-------IPEIARQLNVEAVFANHDEEPSAQARDEAVR 133

Query: 125 KRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--- 179
           K L  +  C  FD  D V+     ILN   + Y V+TP++ A +  L   DLR+ P    
Sbjct: 134 KALAQQP-CAWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPLDLRAYPTEPY 192

Query: 180 ------PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                 P   L  P        F       I    P G      +L +F +E++  Y  +
Sbjct: 193 FGALARPPEALAQPTPALEAMGFARTNLSEI--ALPSGMSGGQTLLDEF-EERMDDYHAR 249

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA++G S LS +L  G +S R    R        +++   GA +WL+EL+WR+FY  
Sbjct: 250 RDFPAVRGPSYLSTHLRFGTVSIRTLAARAHAA----MLRGSRGAATWLSELVWRDFYFM 305

Query: 294 LMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           ++   P +  G  F P  ++I W   +      +AWK   TG+P++DAAM Q+   G+MH
Sbjct: 306 ILHHRPDLADGAAFHPEFDRIRWVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQSGYMH 365

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NRLRM+ ASFL+KDL +DWR GE+YF   L D D A+NNGGWQWAAS+G D+ P+FRIFN
Sbjct: 366 NRLRMVAASFLIKDLGIDWRRGEQYFADVLNDFDFAANNGGWQWAASSGCDAQPWFRIFN 425

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVD 462
           P  Q ++FDPQG FIR +LP+L  +P +YIHAP  W    +        L   YPLPIVD
Sbjct: 426 PVTQSEKFDPQGRFIRKYLPQLAKLPDKYIHAP--WTAPANVLKEASVVLGETYPLPIVD 483

Query: 463 HKKACHHTLNQYYAAK 478
           H  A   TL++Y   K
Sbjct: 484 HAAARAATLDRYAVTK 499


>gi|229918519|ref|YP_002887165.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b]
 gi|229469948|gb|ACQ71720.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b]
          Length = 450

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 177/474 (37%), Positives = 252/474 (53%), Gaps = 36/474 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + W R+D R+TDN  L+    + +    +  VF   P+    H    R  +F ++++   
Sbjct: 4   ICWFRSDFRLTDNHMLHRVLKDMEEGDDLDFVFWLNPKYC--HPFEVRHDYF-FSTMRTF 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRL 127
              L  KG+  +       D  ++ L    +      L++N +Y E  + R D+++E  L
Sbjct: 61  MDDLEAKGLGLRVLVAETEDAFVKQLGEMDV------LYFNAEYVEPFKQRDDRVIEA-L 113

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V      D  L  P +    +   YKV+TPF+KA       A      V   RL+  
Sbjct: 114 SEDVKVVRLLDRHLFHPDAFRTKSGDPYKVFTPFKKAAYAEQPPA---PYEVDVNRLSQY 170

Query: 188 V-----TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +      PS +   F    +       +GE  A   L +F  +++  Y E+RDIP+I GT
Sbjct: 171 IRSKNEQPSELKELFK---RCKREWKGLGETEAKKRLTRFVNDRMVDYDEKRDIPSIAGT 227

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL  GVLS R    ++      L  +   G  ++ +EL+WREFY  +MA +  + 
Sbjct: 228 SRLSPYLRTGVLSIRTITEQV------LSARQSKGRDTYYDELLWREFYYMVMAKFHGL- 280

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PF    + IEW  +    + W  G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL 
Sbjct: 281 KDQPFNDKYKSIEWEDNEEQFEKWCNGETGYPIVDAAMRQLNETGWMHNRLRMIVASFLS 340

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE YF  +L+D + ASN GGWQWAAS G D+VPYFRIFNPT Q +RFDP G
Sbjct: 341 KHLLLDWRKGERYFEQKLIDYEAASNIGGWQWAASVGTDAVPYFRIFNPTTQSERFDPDG 400

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           TFIR ++PEL +V  + IH P    +++D    Y +P+VDHK+A    L ++ A
Sbjct: 401 TFIRKYVPELKHVSDKSIHFPDP-SERDD----YAMPLVDHKEARERALERFKA 449


>gi|284054552|ref|ZP_06384762.1| Deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
           Paraca]
          Length = 474

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 175/472 (37%), Positives = 247/472 (52%), Gaps = 34/472 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA     ++V+ VF   PE      I+  +  ++   L  +Q+
Sbjct: 6   LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      Q    D+  + L    +      +++NR  E    +RD+ +E+ L   
Sbjct: 65  DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAIYWNRDVEPLPRQRDRSVEESLTEV 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------LVQADLRSLPVPA 181
            I  ++F D VL  P +I   + + YKVYTP+ +  IQ         L    L      A
Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKA 180

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               G +    +P   D  F   +P +   GE  A   L  FC   +Y Y E R+ PAI 
Sbjct: 181 ALEAGAIA---LPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAID 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRHLMAF 297
           GTS LSP L  G +  R  W + +E  +  L +         +W  EL WREFY+  +  
Sbjct: 238 GTSVLSPALRFGAIGIRTLWQKTQE--IMALTRSDEARHHIQTWQQELAWREFYQQALYH 295

Query: 298 YPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +P++  G   +PF    ++  W+ +    QAW QG TG+PI+DAAMRQLN  GWMHNR R
Sbjct: 296 FPALATGAFRQPF----DRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCR 351

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL KDL+++W+ GE+YFM  L+DGDLASNNGGWQW++S+G D  P  RIFNP  Q
Sbjct: 352 MIVASFLTKDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQ 410

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465
            +++DP+  +IR WLPEL N+ T + +    S  D+   +  YP PIVDH +
Sbjct: 411 TQKYDPEAEYIRQWLPELRNLDTAHLVTGKISSGDRQ--ACGYPQPIVDHNR 460


>gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 474

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 175/472 (37%), Positives = 247/472 (52%), Gaps = 36/472 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L  A   S  K+I VF   P       I+  +  ++   L +++K
Sbjct: 6   LFWHRRDLRLSDNIGLSKARERS-PKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  QKG      +        + L +         +F+N   E    +RD+ +   LQ +
Sbjct: 65  NYRQKGSQLLIIR----GKPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPF----------RKALIQNLVQADLRSLPV 179
            I  ++F D +L  PG +L  +   Y VYTPF          R   ++NL   D      
Sbjct: 121 GIEVETFWDQLLQAPGQVLTLSKSPYTVYTPFWKNWSQLAKARPTTLENLQGLDKNE--- 177

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              +LT  +   N+P   +  F   +P+    GE+ A   L +FC+  +  Y E R+ PA
Sbjct: 178 -GEKLTETI---NLPTLENLGFTWQNPLPLTPGEKAANSTLEEFCQGVINNYQEDRNFPA 233

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAF 297
           + GTS+LS  L  G +  R  W    E   +   +  K    +W  EL WREFY+H + F
Sbjct: 234 VDGTSRLSAALKFGTIGIRTIWTATLELLENCRAQEAKDSIITWQQELAWREFYQHCLYF 293

Query: 298 YPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +P + +G   K F        W  +    QAW QG TG+PI+DAAMRQLN  GWMHNR R
Sbjct: 294 FPELAVGAYRKEF----RHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCR 349

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL KDL+++W+ GE+YFM +L DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q
Sbjct: 350 MIVASFLTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQ 408

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465
            ++FDP+G +IR WLPEL +V T+Y +      L+++     YP PIVDH +
Sbjct: 409 TQKFDPEGEYIRQWLPELASVDTEYLVTGKIPRLERH--RCGYPEPIVDHNQ 458


>gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
           centenum SW]
 gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
           centenum SW]
          Length = 489

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 180/489 (36%), Positives = 251/489 (51%), Gaps = 43/489 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67
           LVW R DLR+ DN AL  A   S   V+ VF+    TP  WR  G S     +++ SL  
Sbjct: 7   LVWFRQDLRLADNPALSDAAR-SGRPVVPVFVLDDDTPGGWRPGGAS---RWWLHHSLAS 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL+  G      +    D +I        +     + +NR YE     RD  L+  L
Sbjct: 63  LSRSLATAGSPLVLRR-GRADVAI---GELVRETGAGTVLWNRCYEPWATERDSRLKADL 118

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   V  KSF+ S+L  P ++   A + Y+V+TPF +A+  +    +  + P    RL  
Sbjct: 119 RAAGVEVKSFNGSLLREPMTVRTAAGEPYRVFTPFWRAVSSSPDWPEPLAAP---DRLEA 175

Query: 187 PVT-PSN--------IPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           P T P++        +P   D+     QA  P    GE      LR F +     Y E R
Sbjct: 176 PPTAPASDPLESWGLLPTTPDWAGGLRQAWQP----GEAAVAARLRAFLEGAAADYAEGR 231

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP---KSGAFSWLNELIWREFY 291
           D P   GTS+LSPYL  G +SPRQ W   ++    L   P   +  A S+L EL WREF 
Sbjct: 232 DRPGSDGTSRLSPYLHFGEISPRQVWAATRDAM--LSGNPPEHRRHAESFLRELGWREFC 289

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            +L+  +P +   +P  P  E   W  DS  L +W++G TG+PI+DA MRQL T GWMHN
Sbjct: 290 YNLLYHFPKLPE-RPLNPRFEDFPWQPDSAALDSWQRGRTGYPIVDAGMRQLWTTGWMHN 348

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMI  SFLVK LL+ W+ G+ +F   L+D DLA+N  GWQW A  G D+ PYFR+FNP
Sbjct: 349 RVRMIVGSFLVKHLLLPWQEGQRWFWDTLVDADLANNAAGWQWIAGCGADAAPYFRVFNP 408

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465
            +QG +FDP G ++R W+PEL  +P   IH P +   +        L  +YP P ++HK+
Sbjct: 409 VLQGGKFDPDGRYVRRWVPELAALPDTLIHQPWTATAETLRRAGIRLGTDYPAPCIEHKR 468

Query: 466 ACHHTLNQY 474
                L  +
Sbjct: 469 GRDRALAAF 477


>gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
 gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
          Length = 471

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 177/489 (36%), Positives = 265/489 (54%), Gaps = 37/489 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  VI ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     +     D  E +     Q  V  +++NR YE   + RDK ++  
Sbjct: 57  ALGKSLNQQGLSLVLRK----GDPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLA 112

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I  +SF+ ++L  P +I N     +KV+TP+ K   Q L      ++P P +   
Sbjct: 113 LGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL------NIPSPFMLTK 166

Query: 186 GP----VTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            P    +T  ++ ++   P           +  GE+ A   L +F    +  Y  +RD P
Sbjct: 167 RPRGIEITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFP 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           A   TS+LSP+L  G +SP      L+    E+  DL     +    +L+EL WREF  +
Sbjct: 227 AKNATSRLSPHLHFGEISPWVILRALELAKLEQTCDL-----ASVEHFLSELGWREFSVY 281

Query: 294 LMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           L+  +P + C  + F    +   W  D  LL  W++G TG+PIIDA MR+L   G+MHNR
Sbjct: 282 LLYHFPKLDC--ENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNR 339

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI ASFL KDLL+DWR G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP 
Sbjct: 340 VRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPV 399

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHT 470
           +Q ++FDP G +IR W+PEL  + +Q IH P +  D N + L   YP PI+DH++A    
Sbjct: 400 LQSQKFDPDGIYIRQWIPELAQLNSQSIHQPWTDADANSIFLGKKYPKPIIDHQEARTKA 459

Query: 471 LNQYYAAKK 479
           L+ Y   KK
Sbjct: 460 LSYYQQIKK 468


>gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
 gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
          Length = 479

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 172/485 (35%), Positives = 262/485 (54%), Gaps = 25/485 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+D+K L AA   S ++V+ VF   P    Q  ++  +  ++   L ++QK
Sbjct: 6   LFWHRRDLRISDHKGLAAAREKS-SQVVGVFCLDPNILDQDDVAPARVTYMIGCLQELQK 64

Query: 71  SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
              + G   ++ Q    S      + L++  +       ++N   E     RD+ + + L
Sbjct: 65  QYEKVGSQLLILQGQPSSAIPKLAKALEAKAV-------YWNLDVEPYAKDRDQQVSEAL 117

Query: 128 QH-RVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +   +  ++  D +L  P  I    A + YKVYTP+     +   Q  + +       LT
Sbjct: 118 KEVNIGVETVWDQLLHTPDEIRTKSANEPYKVYTPYWNNWSKRKKQKPIHTFSENPTGLT 177

Query: 186 GP---VTPSN----IPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                +   N    +P   D  F   + +    GE+ A + L +FC   ++ Y EQR+ P
Sbjct: 178 EKQLKIAKENGIIDLPLAEDLGFVWENELILEPGEEAAQNRLEEFCDRALFEYDEQRNFP 237

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMA 296
           A  GTSQLS  L  GV+S R  W +  E   +    + ++   +W  EL WREFY+  M 
Sbjct: 238 ANDGTSQLSAALKFGVISIRTVWAKTVEAMENTRSDEARNNIKAWQQELAWREFYQQAMY 297

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P +  G P+    +   W+++    QAW +G TG+PI+DAAMRQLN IGWMHNR RMI
Sbjct: 298 HFPELANG-PYRDHFKDFPWSENQEHFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMI 356

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            A+FL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNPT Q +
Sbjct: 357 VANFLTKDLMINWQWGEKYFMQKLMDGDLSANNGGWQWSASSGMDPKP-LRIFNPTTQAQ 415

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           ++DP+G +IR WLPEL+++ T+Y+        K+  + +YP PIVDHK+      + Y  
Sbjct: 416 KYDPEGEYIRQWLPELSSLDTEYL-VTGKISSKDREACDYPEPIVDHKQQQQQFKSLYKE 474

Query: 477 AKKQS 481
            K+ S
Sbjct: 475 QKEAS 479


>gi|220934567|ref|YP_002513466.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995877|gb|ACL72479.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 483

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 175/490 (35%), Positives = 254/490 (51%), Gaps = 38/490 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+TDN AL  A    D +VI V+I  PE+            +++ SL  + +
Sbjct: 4   LLWFRRDLRLTDNPALARALE--DGEVIPVYIHAPEEEGDWAPGGASLWWLHHSLAALGE 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  +G+     Q +    S+E L +   +    ++ +NR YE   + RD  ++++L+ +
Sbjct: 62  DLRARGVDLVIRQGA----SLETLQALIRETGAQQVLWNRLYEPALIARDTGIKQQLRDQ 117

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV- 188
            I  +SF+ ++L  P ++       YKV+TPF KA +   V  D+   P    R+ GP  
Sbjct: 118 GIRTQSFNAALLFEPWTVAKQDGTPYKVFTPFWKACLGLGVPVDVTPAPE---RIQGPAQ 174

Query: 189 -----TPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                T  ++    D  + A    ++  GE  AL  L +F  E V  Y E R+ P   G+
Sbjct: 175 LPPGETLKSLGLLPDIDWAAGFTELWQPGEAGALARLAEFMDEAVADYDEMRNRPDRDGS 234

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-------SWLNELIWREFYRHLM 295
           S+LSPYL  G + PRQ     +      + K + G         S+L E+ WREF  HL+
Sbjct: 235 SRLSPYLHFGEIGPRQAAAACQ------VAKDRHGGKAAHQGIDSFLREIGWREFAHHLL 288

Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             +P     +P  P   K+ W + D   L+AW++G TG P++DAAMR L   GWMHNR+R
Sbjct: 289 YHFPRTS-DEPLDPRFRKLPWRELDEETLRAWQRGRTGIPLVDAAMRALWATGWMHNRVR 347

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI AS L K+L   W  G  +F   L+D DLA N  GWQW A  G D+ PYFR+FNP +Q
Sbjct: 348 MIVASLLTKNLGAHWLTGARWFWDTLVDADLAGNTLGWQWTAGCGADAAPYFRVFNPVLQ 407

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKACH 468
           G+RFDP G ++R W+PEL  +P +YIH    AP + L    + L  NYP PIVD  ++  
Sbjct: 408 GERFDPNGDYLRQWVPELAKLPAKYIHRPWEAPEAILKAAGVRLGGNYPRPIVDLAESRR 467

Query: 469 HTLNQYYAAK 478
             L  +   K
Sbjct: 468 QALEMWEVIK 477


>gi|212639063|ref|YP_002315583.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1]
 gi|212560543|gb|ACJ33598.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1]
          Length = 468

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 169/468 (36%), Positives = 253/468 (54%), Gaps = 27/468 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSH--FI 61
           M   +VW R D R+ D+ AL  A         K++  F   P     +    R  H  + 
Sbjct: 4   MHTAVVWFRRDFRLHDHTALVHALRWAKERQGKLLFFFHFDP-----YFAKERTYHHEYF 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + ++ Q ++ L     +  +    + DD    L S   +  +  +F+N+        RD+
Sbjct: 59  FQTVEQFRQMLRHLYGIHVHILHGDIDDVFVRLIS---RTHMNAIFFNKDEVGRGKERDE 115

Query: 122 LLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRS 176
            +   LQ + +   ++DD+ L     +L      YKVYTP+    RK   +  +  D+  
Sbjct: 116 YVRTLLQKYGIDVYTYDDAHLHGAFEVLKADGTPYKVYTPYYRAWRKRPKRFPLSIDIDL 175

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           L    +++T P++  +      +  Q         EQ+ALH+L++F    + YY  QRDI
Sbjct: 176 LRAHMLQIT-PLSEYDEHMLKMWLSQCTKRWERTSEQDALHVLQQFIDTSLPYYHRQRDI 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA+ GTS+LSP+L  G LS R  ++ + ++F +          +++ EL WR+FY  + A
Sbjct: 235 PAVSGTSRLSPHLKTGTLSIRTVFHAVAQQFGNGY---DEAVETYIKELAWRDFYHMIYA 291

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     + FI     + W++D    +AWK+G TGFP++DA MRQL   GWMHNRLRMI
Sbjct: 292 HFP-FTKTEAFIEKYRHLPWSRDDERFEAWKEGKTGFPLVDAGMRQLKEEGWMHNRLRMI 350

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KD L+DWR+GE+YF   L+D D ASN GGWQWAAS G D+VPYFR+FNP  Q K
Sbjct: 351 AASFLTKDYLIDWRMGEQYFQHMLIDYDEASNIGGWQWAASVGTDAVPYFRVFNPIEQSK 410

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           +FDP GT+IR ++ EL + P+ YIH P  W  K+++  +YP P VDH+
Sbjct: 411 KFDPDGTYIRTYVQELASFPSLYIHEP--W--KSNIQTDYPAPTVDHQ 454


>gi|309780777|ref|ZP_07675518.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Ralstonia sp.
           5_7_47FAA]
 gi|308920459|gb|EFP66115.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Ralstonia sp.
           5_7_47FAA]
          Length = 518

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 183/500 (36%), Positives = 258/500 (51%), Gaps = 53/500 (10%)

Query: 11  LVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATP-EQWRQHGI-SARQSHFIYASLLQ 67
           LVW R DLR  D+ AL YA  H  +   + VF     +     G+ S R+  FI AS+ +
Sbjct: 21  LVWFRRDLRHVDHAALHYALRHCREVYCVFVFDRDILDALLARGLKSDRRVEFIRASIEE 80

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           ++ +L + G   IV   H           +     Q  V  +F N   E +   RD+ + 
Sbjct: 81  LRGALRETGGDLIVVHDHPRHA-------IPEIARQLNVEAVFANHDEEPSAQARDEAVR 133

Query: 125 KRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           K L  +  C  FD  D V+     ILN   + Y V+TP++ A +  L   DLR+ P    
Sbjct: 134 KALAQQP-CAWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPFDLRAYPTEPY 192

Query: 183 --RLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYY 229
              L  P      P    +P  A++ M            P G      +L +F +E++  
Sbjct: 193 FGALAKP------PEALAHPTPALEAMGFARTNLSEIALPSGMSGGQTLLDEF-EERMDD 245

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y  +RD PA++G S LS +L  G +S R    R        +++   GA +WL+EL+WR+
Sbjct: 246 YHARRDFPAVRGPSYLSTHLRFGTVSIRTLAARAHAS----MLRGSRGAATWLSELVWRD 301

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           FY  ++   P +  G  F P  ++I W   +      +AWK   TG+P++DAAM Q+   
Sbjct: 302 FYFMILHHRPDLADGAAFHPEFDRIRWVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQS 361

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+ ASFL+KDL +DWR GE+YF   L D D ++NNGGWQWAAS+G D+ P+F
Sbjct: 362 GYMHNRLRMVAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWF 421

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPL 458
           RIFNP  Q ++FDPQG FIR +LP+L  +P +YIHAP  W    +        L   YPL
Sbjct: 422 RIFNPVTQSEKFDPQGRFIRKYLPQLAKLPDKYIHAP--WTAPANVLKEASVVLGETYPL 479

Query: 459 PIVDHKKACHHTLNQYYAAK 478
           PIVDH  A   TL++Y   K
Sbjct: 480 PIVDHAAARAATLDRYAVTK 499


>gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
 gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
          Length = 471

 Score =  280 bits (715), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 175/489 (35%), Positives = 267/489 (54%), Gaps = 37/489 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  VI ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     + +  +  +E +  Y     V  +++NR YE   + RDK ++  
Sbjct: 57  ALGKSLNQQGLCLVLRKGAPQEIILELVAQYG----VESVYWNRCYEPQAIARDKKIKLA 112

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I  +SF+ ++L  P +I N     +KV+TP+ K   Q L      ++P P +   
Sbjct: 113 LGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL------NIPSPFMLTK 166

Query: 186 GP----VTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            P    +T  ++ ++   P           +  GE+ A   L +F    +  Y  +RD P
Sbjct: 167 RPRGIKITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFP 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           A   TS+LSP+L  G +SP      L+    E+  DL     +    +L+EL WREF  +
Sbjct: 227 AKNATSRLSPHLHFGEISPWVILRALELAKLEQTCDL-----ASVEHFLSELGWREFSVY 281

Query: 294 LMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           L+  +P + C  + F    +   W  D  LL  W++G TG+PIIDA MR+L   G+MHNR
Sbjct: 282 LLYHFPKLDC--ENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNR 339

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI ASFL KDLL+DWR G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP 
Sbjct: 340 VRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPV 399

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHT 470
           +Q ++FDP G +IR W+PEL  + +Q IH P +  D + + L   YP PI+DH++A    
Sbjct: 400 LQSQKFDPDGVYIRQWIPELAQLNSQSIHQPWTDADASSIFLGKKYPKPIIDHQEARTKA 459

Query: 471 LNQYYAAKK 479
           L+ Y   KK
Sbjct: 460 LSYYQQIKK 468


>gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843]
 gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843]
          Length = 474

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 174/466 (37%), Positives = 248/466 (53%), Gaps = 24/466 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L  A   S  K+I VF   P       I+  +  ++   L +++K
Sbjct: 6   LFWHRRDLRLSDNIGLSKARERS-PKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  QKG      +     +  + L +         +F+N   E    +RD+ +   LQ +
Sbjct: 65  NYHQKGSQLLIIR----GNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-------PAI 182
            I  ++F D +L  PG +L  +   Y VYTPF K   Q L +A  ++L            
Sbjct: 121 GIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQ-LAKASPKTLENLQGLDENEGE 179

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +LT  +   N+P   +  F   +P+    GE+ A   L +FC+  +  Y E R+ PA  G
Sbjct: 180 KLTETI---NLPTLENLGFTWQNPLPLTPGEKAAHSRLEEFCQGVINNYQEDRNFPAFDG 236

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPS 300
           TS+LS  L  G +  R  W    E   +   +  K    +W  EL WREFY+H + F+P 
Sbjct: 237 TSRLSAALKFGAIGIRTIWTATLELLENCCAQEAKDSIITWQQELAWREFYQHCLYFFPE 296

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           + +G  +        W  +    QAW QG TG+PI+DAAMRQLN  GWMHNR RMI ASF
Sbjct: 297 LAVGA-YRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASF 355

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL+++W+ GE+YFM +L DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++FDP
Sbjct: 356 LTKDLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDP 414

Query: 421 QGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465
           +G +IR WLPEL +V T+Y +      L+++     YP PIVDH +
Sbjct: 415 EGEYIRQWLPELASVDTEYLVTGKIPRLERH--RCGYPEPIVDHNQ 458


>gi|302664116|ref|XP_003023694.1| hypothetical protein TRV_02203 [Trichophyton verrucosum HKI 0517]
 gi|291187700|gb|EFE43076.1| hypothetical protein TRV_02203 [Trichophyton verrucosum HKI 0517]
          Length = 565

 Score =  279 bits (714), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 172/489 (35%), Positives = 243/489 (49%), Gaps = 45/489 (9%)

Query: 13  WLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR+ DN++L   Y+   + +  +I ++I +PE    H  S  +  FI  +L  ++
Sbjct: 102 WFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDFILRTLATLK 161

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             LS+K I                +   C       LF N +YE++E+RR+  L +    
Sbjct: 162 SELSKKDIPLYMESMERRKRIPIRIVELCKTWGANHLFANIEYEVDELRREAKLTRLCTT 221

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTG 186
           + I   + DD+ ++ PG +     + Y VYTP+ ++ +  L Q   +L  +  PA+    
Sbjct: 222 QGIRFDTEDDTCVVAPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNAGD 281

Query: 187 -------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                        P+ P+ + +  +   +    M+P GEQ A   LR+F  EK   Y  +
Sbjct: 282 ARKHFEDLFDSAVPIAPNQM-KLSEAEQERFKKMYPEGEQEATRRLREFLSEKGKQYRSK 340

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD  + Q TS LSPY S G LS R        +   L+I   S +               
Sbjct: 341 RDFMSSQITSVLSPYFSCGALSARTAPFIEAMKLCGLVITDVSSS--------------- 385

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                    M K F P    +EW  DS    AW +G TGFPI+DAAMRQL    WMHNR 
Sbjct: 386 ---------MNKCFKPEFTDLEWGYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNRT 436

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP  
Sbjct: 437 RMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLR 496

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472
           Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L 
Sbjct: 497 QSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAEEIAEKNGYPRPIVNHTESRERALE 556

Query: 473 QYYAAKKQS 481
           +Y  A   S
Sbjct: 557 KYKKAAHGS 565


>gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43]
 gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43]
          Length = 484

 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 167/488 (34%), Positives = 250/488 (51%), Gaps = 33/488 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW RNDLR+ DN AL AA   S  +V+ V+I  P       I   +  +++ SL ++ +
Sbjct: 13  IVWFRNDLRVNDNAALLAAS--SHKQVVPVYILEPAA-NTRAIGGARKWWLHHSLAKLGE 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G      +     D    +     +     +++NR+Y+   +  D  L+  L+ +
Sbjct: 70  KLADLGAPLMLMRG----DPALLIAGLVEKTDAAAVYWNRRYDPAFLSSDASLKDALRAQ 125

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            ++ +SF   +L  P  +       YKVY+PF +A+   +   D    P P  RLT    
Sbjct: 126 DIVVESFAGQLLHEPTRVRTGNDTFYKVYSPFWRAIEGGI--EDREPAPAPD-RLTALAN 182

Query: 190 PSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                   D+      P         +  GE  A   L +F  E+V  Y   RD+P ++ 
Sbjct: 183 APQSETLSDWGLLPTKPDWARGLRETWKPGEDGAHERLDEFVSERVCGYASLRDVPGVES 242

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L+ G ++P Q    LK    D   K ++    +  E+ WREF  HL+   P +
Sbjct: 243 TSRLSPHLANGEITPAQIIQALKASDADASPKDRT---VFRKEVGWREFSYHLLVNEPDL 299

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +      +   W  D   L AW++G TG+PI+DA MR+L   GWMHNR+RM+TASFL
Sbjct: 300 PQ-QNHNSRFDGFPWKDDETALLAWQKGVTGYPIVDAGMRELWRTGWMHNRVRMVTASFL 358

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L+VDWR GE +F   L+D D ASN   WQW A +G D+ PYFR+FNP IQG++FDP 
Sbjct: 359 TKHLMVDWREGERWFWDTLVDADPASNAASWQWVAGSGADAAPYFRVFNPIIQGEKFDPD 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTLNQ 473
           G ++R ++PEL N+P+++IH P  W   +D        L   YP+PIVDH++A +  L  
Sbjct: 419 GDYVRRYVPELANLPSKFIHKP--WTAPDDALAKAGVHLGETYPMPIVDHQQARNRALAA 476

Query: 474 YYAAKKQS 481
           Y   K  +
Sbjct: 477 YEKIKDAA 484


>gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
 gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
          Length = 468

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 176/487 (36%), Positives = 243/487 (49%), Gaps = 37/487 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSVH+ W R DLR TDN +L AA       VI  FI  P        S  +  F+  SL 
Sbjct: 1   MSVHVHWHRRDLRATDNHSLSAAAET--GSVIPAFIFDPAVL--EFASPPRVAFMLESLS 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +++    ++G            D  E L     +    ++ +NR Y     +RD+ + + 
Sbjct: 57  ELRAWYRERGGDL----VVATGDPREELPRIAREHGAERVSWNRDYSGLASKRDEEVREA 112

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA---- 181
           L    I   S DD++L  PGSI     + Y VY+ F K       ++     PV A    
Sbjct: 113 LTDAGIEATSVDDALLFEPGSITTQQGETYAVYSYFWKKWRDREKES-----PVSAPDGE 167

Query: 182 --IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               ++G   PS     FD P   I      G + A   L  FC + +Y Y +QRD PA 
Sbjct: 168 QLASVSGDSLPSQEALGFDDPEATIPDA---GMEAARRRLETFCADPIYRYADQRDDPAA 224

Query: 240 QGTSQLSPYL---SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
             TS LSP+L   +IG+ +  +  +R K E  D         F   ++L WR FY H++ 
Sbjct: 225 DATSGLSPHLKWGTIGIRTVYEALDRAKSEAPDEAAADSCEEFE--SQLAWRAFYAHVLD 282

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P       +  +   I+W  D+  LQAWK G TG+PI+DA MRQL    +MHNRLRMI
Sbjct: 283 TNPHTVTAN-YRSYENPIQWQTDAAALQAWKDGKTGYPIVDAGMRQLRAEAFMHNRLRMI 341

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL++DWR G  +F  +L D D AS+ GGWQWA+ TG D+ PYFRIFNP  QG+
Sbjct: 342 VASFLTKDLMLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGE 401

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL-----DKNDLSLNYPLPIVDHKKACHHTL 471
           R DP   +IR ++PEL +VP + I   H W+     ++  ++  YP PIVDH       L
Sbjct: 402 RHDPDAEYIRTYVPELADVPAETI---HEWVALEPDERASVAPEYPDPIVDHAARREAAL 458

Query: 472 NQYYAAK 478
           + + AA+
Sbjct: 459 DMFEAAR 465


>gi|94988861|ref|YP_596962.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
 gi|94992751|ref|YP_600850.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
 gi|94542369|gb|ABF32418.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
 gi|94546259|gb|ABF36306.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
          Length = 480

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 182/495 (36%), Positives = 264/495 (53%), Gaps = 46/495 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           ++ V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+
Sbjct: 10  SVMVSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSV 66

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEV 117
           L  +K L          +C   D  + + D   C +Q +T+L       F   +     +
Sbjct: 67  LAFRKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRL 116

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           R  K  +   ++ +   ++ D  L     I+N + Q YKV+TP+ + + QN  +     +
Sbjct: 117 RDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKV 175

Query: 178 PVPAIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +   R     TP ++ R    F D  +Q +       +Q     L +F ++++  Y   
Sbjct: 176 ELSQGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHAN 230

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292
           RD PA  GTS+LSP+L IG +  R  ++ +++        P S G  ++L EL WR+FY 
Sbjct: 231 RDFPAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYN 283

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +   YP     +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNR
Sbjct: 284 MVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 342

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMI ASFL KDLL DWR+GE++F  QL+D D ASN GGWQWAASTG D+VPYFR+FNP 
Sbjct: 343 LRMIVASFLTKDLLCDWRLGEQHFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRVFNPV 402

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAP---HSWLDKND---LSLNYPLPIVDHKKA 466
            Q KRFDP+G FI+ +LP+L +VP +Y+H P     +L ++    +  +YP PIVDH K 
Sbjct: 403 TQSKRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQ 462

Query: 467 CHHTLNQYYAAKKQS 481
               + +Y  AK+++
Sbjct: 463 REQAIAKYEWAKEKA 477


>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
          Length = 474

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 174/472 (36%), Positives = 248/472 (52%), Gaps = 34/472 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA     ++V+ VF   PE      I+  +  ++   L  +Q+
Sbjct: 6   LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      Q    D+  + L    +      +++N+  E    +RD+ +E+ L   
Sbjct: 65  DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------LVQADLRSLPVPA 181
            I  ++F D VL  P +I   + + YKVYTP+ +  IQ         L    L      A
Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKA 180

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               G +    +P   D  F   +P +   GE  A   L  FC   +Y Y E R+ PAI 
Sbjct: 181 ALEAGAIA---LPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAID 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRHLMAF 297
           GTS LSP L  G +  R  W + +E  +  L +         +W  EL WREFY+  +  
Sbjct: 238 GTSVLSPALRFGAIGIRTLWQKTQE--IIALTRSDEARHHIQTWQQELAWREFYQQALYH 295

Query: 298 YPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +P++ +G   +PF    ++  W+ +    QAW QG TG+PI+DAAMRQLN  GWMHNR R
Sbjct: 296 FPALAIGAFRQPF----DRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNQTGWMHNRCR 351

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL KDL+++W+ GE+YFM  L+DGDLASNNGGWQW++S+G D  P  RIFNP  Q
Sbjct: 352 MIVASFLTKDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQ 410

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465
            +++DP+  +IR WLPEL N+ T + +    S  D+   +  YP PIVDH +
Sbjct: 411 TQKYDPEAEYIRQWLPELRNLDTAHLVTGKISSGDRQ--ACGYPQPIVDHNR 460


>gi|139473471|ref|YP_001128187.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes str.
           Manfredo]
 gi|134271718|emb|CAM29951.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           str. Manfredo]
          Length = 469

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 183/492 (37%), Positives = 261/492 (53%), Gaps = 46/492 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEVRRD 120
           +K L          +C   D  + + D   C +Q +T+L       F   +     +R  
Sbjct: 59  RKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQ 108

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           K  +   ++ +   ++ D  L     I+N + Q YKV+TP+ + + QN  +     + + 
Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKVELS 167

Query: 181 AIRLTGPVTPSNIPRFF----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             R     TP ++ R      D  +Q +       +Q     L +F ++++  Y   RD 
Sbjct: 168 QGRWLNLETPDDVLRTVESIKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHANRDF 222

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295
           PA  GTS+LSP+L IG +  R  ++ +++        P S G  ++L EL WR+FY  + 
Sbjct: 223 PAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYNMVY 275

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP     +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRM
Sbjct: 276 VAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRM 334

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL KDLL DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  Q 
Sbjct: 335 IVASFLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQS 394

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP---HSWLDKND---LSLNYPLPIVDHKKACHH 469
           KRFDP+G FI+ +LP+L +VP +Y+H P     +L ++    +  +YP PIVDH K    
Sbjct: 395 KRFDPKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQ 454

Query: 470 TLNQYYAAKKQS 481
            + +Y  AK+++
Sbjct: 455 AIAKYEWAKEKA 466


>gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
 gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
          Length = 474

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 171/470 (36%), Positives = 249/470 (52%), Gaps = 30/470 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA     ++V+ VF   P       I+  +  ++   L  +Q+
Sbjct: 6   LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPAILSGDDIAPVRVAYMIGCLQCLQR 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      Q    D+  + L    +      +++N+  E    +RD+ +E+ L   
Sbjct: 65  DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--------NLVQADLRSLPVPA 181
            I  ++F D VL  P +I   + + YKVYTP+ +  IQ         L    L      A
Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCDTLKSRGLTEAQEKA 180

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            R  G +    +P   D  F   +P +   GE  A   L+ FC   +Y Y + R+ PAI 
Sbjct: 181 AREAGAIA---LPTAKDLGFIWSEPFILEPGETAASDRLQLFCDRAIYEYDQGRNFPAID 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           GTS LSP L  G +  R  W + +E   +    + +    +W  E+ WREFY+  +  +P
Sbjct: 238 GTSLLSPALRFGAIGIRTLWQKTQEIMALTRSDEARDHIQTWQQEIAWREFYQQALYHFP 297

Query: 300 SVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           ++  G   +PF    ++  W+ +    QAW QG TG+PI+DAAMRQLN  GWMHNR RMI
Sbjct: 298 ALATGAFRQPF----DRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMI 353

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL+++W+ GE+YFM +L+DGDLASNNGGWQW++S+G D  P  RIFNP  Q +
Sbjct: 354 VASFLTKDLIINWQWGEKYFMQRLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQAQ 412

Query: 417 RFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465
           ++DP+  +IR WLPEL N+ T + +    S  D+   +  YP PIVDH +
Sbjct: 413 KYDPEAEYIRQWLPELRNLETAHLVTGKISSSDRQ--ACGYPQPIVDHNQ 460


>gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 482

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 171/484 (35%), Positives = 255/484 (52%), Gaps = 35/484 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67
           ++W RNDLR+ D+ AL AA H + A ++ ++I   A+P+QW+  G S     ++  SL  
Sbjct: 7   VLWFRNDLRLGDHAALVAAVH-TGAPILPLYILDDASPKQWKMGGAS---HWWLDKSLAA 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L+ +G      +     DS   L     +     +++ R YE   V  ++ L+ +L
Sbjct: 63  LAGDLASRGGPLVLRRG----DSETELLRMIEETGAAAVYFTRSYEPWAVALEQRLKTKL 118

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               V C+ F   +L  P  +       YKVYTPF +A++++LV A  +S+  P    T 
Sbjct: 119 DDANVACRRFGGRLLREPEDMRTSNGGFYKVYTPFSRAIMKDLVPA--KSVRAPERIATL 176

Query: 187 PVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              P +  R  D+      P         +  GE  A   L  F +  +  Y   R+ PA
Sbjct: 177 EKQPKS-ERLRDWALHPQKPDWSKGFAAAWQPGEAGARKRLSDFVRTALKSYARDRNCPA 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             GTS+LSP+L+ G +SP  C                + A ++L EL+WREF   L+  +
Sbjct: 236 TPGTSRLSPHLAFGEISPAAC-WHAAAHAGGKTNGSDNAAETFLKELLWREFSAGLLFHF 294

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +   +PF P      W+ ++  L+AW+ G TG+PI+DA MR+L   G+MHNR+RMITA
Sbjct: 295 PELPE-EPFRPEFSAFPWHGNAKHLKAWQTGQTGYPIVDAGMRELWATGYMHNRVRMITA 353

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL+K LL+ W+ GE +F   L+D DLA+N+  WQW A +G D+ PYFRIFNP +QG++F
Sbjct: 354 SFLIKHLLIPWQTGEAWFWDTLVDADLANNSANWQWVAGSGADAAPYFRIFNPVLQGEKF 413

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHT 470
           DP G ++R W+PEL  +P Q IHAP  W   +         L  +YP PIV+H +A    
Sbjct: 414 DPDGDYVRRWVPELAKLPRQIIHAP--WKADSGTLMEAGVKLGKSYPNPIVEHGEARARA 471

Query: 471 LNQY 474
           L  Y
Sbjct: 472 LAGY 475


>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
           4136]
          Length = 475

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 175/492 (35%), Positives = 261/492 (53%), Gaps = 35/492 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T   V L W R DLR+TDN AL+AA   +  +VI  ++ +  +         + HF+  +
Sbjct: 3   TKTPVSLHWFRRDLRLTDNTALHAA-QTASTQVIPFYVLSSWKKAHAWTGPNRQHFLCGN 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ----YEINEVRRD 120
           L  + K+L   G            +++  ++    +   T L+ NR      +  E    
Sbjct: 62  LESLAKNLEAIGSRLIIRS----GETVSEIERLIRETGATALYTNRDPDPYGQTIETHVI 117

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L  K       CK   D+VL  P  +L      Y+V+TP+ K  + +L +A     P+ 
Sbjct: 118 ALCNKLGVAFHTCK---DAVLHQPQEVLTGNGGPYRVFTPYSKNWL-SLPKAQ----PLS 169

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAI------DPMFPI---GEQNALHILRKFCKE-KVYYY 230
            +R  G   PS  P+    P   +      +P   +   GE+ A   ++ F    ++  Y
Sbjct: 170 KVRTLGDA-PS--PKIKSLPLPTVVHWHLPEPTATLPTPGEKAARDRMKTFVDSVRLPRY 226

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWR 288
            E R+ P++ GTSQLSP L  G++S R+ ++R ++       +P  +SG  +++ EL WR
Sbjct: 227 EETRNFPSVPGTSQLSPDLRYGLISIRELYHRCQQALAQAGGQPAAQSGINTYIKELAWR 286

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EFY  ++ FYP V +   F P    + W++D   L AWK+G TGFP++DA MRQL   GW
Sbjct: 287 EFYMAVLHFYPEV-LETDFNPDLRGVSWHQDPAGLAAWKEGRTGFPLVDAGMRQLLATGW 345

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RMI + FL KDL V W  GE +FM  L+DG++ASNNGGWQW+A TG D+ P+FRI
Sbjct: 346 MHNRVRMIVSMFLTKDLHVHWMEGESHFMQLLVDGEIASNNGGWQWSAGTGADAAPWFRI 405

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
            NP  Q KR+DP+G +I+ W+PEL +VP +   AP +  +   L+  YPLPIVDH     
Sbjct: 406 QNPWTQTKRYDPEGKYIKTWVPELKDVPAEMFFAPPT--NGLPLAKGYPLPIVDHATERD 463

Query: 469 HTLNQYYAAKKQ 480
            TL ++  A K+
Sbjct: 464 RTLQRFKVATKR 475


>gi|121606238|ref|YP_983567.1| deoxyribodipyrimidine photo-lyase [Polaromonas naphthalenivorans
           CJ2]
 gi|120595207|gb|ABM38646.1| deoxyribodipyrimidine photo-lyase type I [Polaromonas
           naphthalenivorans CJ2]
          Length = 477

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 176/492 (35%), Positives = 258/492 (52%), Gaps = 40/492 (8%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ DN AL+ A  + + +V   F+           + R+  FI  SL+ + + 
Sbjct: 1   MWFRRDLRLQDNAALHHALKSCE-QVFCAFVFDRAILDSLPKADRRVEFIRESLVDLNRQ 59

Query: 72  LSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           L++     G++ ++        +++ L +   +  V  +F N   E   + RD  ++  L
Sbjct: 60  LAKLALPAGLLIRHGT------ALDALPALASRLSVDAVFANHDDEPCSLARDAEVQGLL 113

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   V   +F D V+     +L  A Q Y V+TP++KA ++ +    L+  PV       
Sbjct: 114 ECAGVAFHTFKDHVIFERQEVLTLAGQPYTVFTPYKKAWLKKVDAFYLQPYPVEKYASAL 173

Query: 187 PVTPSN----IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              P++    +P   +  F+  +      P G Q A  +   F  +++ +Y + RD PA+
Sbjct: 174 AARPADERQDVPALAELGFEKTNLSALRLPTGSQGAEALFDDFL-DRMPHYADTRDFPAV 232

Query: 240 QGTSQLSPYLSIGVLSPRQ-CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +G S L  +L  G +S R+   N L ++          GA +WL+ELIWR+FY  ++A +
Sbjct: 233 KGPSYLGVHLRFGTISIRKITLNALAQQQTG-----SEGAATWLSELIWRDFYAQILANF 287

Query: 299 PSVCMGKPFIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P       F P  + I W    K   L QAW +G TG+P++DAAM QLN  G+MHNRLRM
Sbjct: 288 PHAA-SSAFKPGYDAIAWEQGEKAELLFQAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRM 346

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TASFLVKDL +DWR GE YF  +L D DLASNNGGWQWAASTG D+ PYFRIFNP  Q 
Sbjct: 347 VTASFLVKDLGIDWRWGERYFAEKLNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVSQS 406

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHKKAC 467
           ++FD  G FIR +LP L  +P   +H+P  WL            L  NY  P+V H +A 
Sbjct: 407 EKFDADGKFIRKYLPVLAKLPKAALHSP--WLASPMERAAASVALGSNYARPVVAHAEAR 464

Query: 468 HHTLNQYYAAKK 479
             TL +Y   KK
Sbjct: 465 ALTLQRYALVKK 476


>gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 471

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 178/489 (36%), Positives = 264/489 (53%), Gaps = 37/489 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  VI ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHYSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     + S  +  +E +  Y     V  +++NR YE   + RDK ++  
Sbjct: 57  ALGKSLNQQGLSLVLRKGSPQEIILELVAQYG----VESVYWNRCYEPQVIARDKKIKLA 112

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I  +SF+ ++L  P +I N     +KV+TP+ K   Q L      ++P P I   
Sbjct: 113 LVEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL------NIPSPFILTK 166

Query: 186 GP----VTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIP 237
            P    +   +I ++   P       F      GE+ A   L +F    +  Y   RD P
Sbjct: 167 RPRGIEIASDDIGKWKLLPAINWAARFSEYWIPGEEGAQKKLDEFIVHHLSGYKRDRDFP 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           A   TS+LSP+L  G +SP      L+    E   DL     +    +L+EL WREF  +
Sbjct: 227 AKNATSRLSPHLHFGEISPWVILRALELAKLEHTCDL-----ASVEHFLSELGWREFSVY 281

Query: 294 LMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           L+  +P + C  + F    +   W  D  LL  W++G TG+PIIDA MR+L   G+MHNR
Sbjct: 282 LLYHFPKLDC--ENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNR 339

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI ASFL KDLL+DWR G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP 
Sbjct: 340 VRMIVASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPI 399

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHT 470
           +Q ++FDP G +IR W+PEL  + +Q IH P +  D + + L   YP PI+DH++A    
Sbjct: 400 LQSQKFDPDGVYIRQWIPELAQLNSQSIHQPWTDADASSIFLGKKYPKPIIDHQEARTKA 459

Query: 471 LNQYYAAKK 479
           L+ Y   KK
Sbjct: 460 LSYYQQIKK 468


>gi|194290487|ref|YP_002006394.1| deoxyribodipyrimidine photolyase (photoreactivation), fad-binding
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224322|emb|CAQ70333.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Cupriavidus taiwanensis LMG 19424]
          Length = 519

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 187/493 (37%), Positives = 262/493 (53%), Gaps = 34/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP---EQWRQHGISA-RQSHFIYASLL 66
           LVW R DLR TD+ AL+ A  +  A+V  VF+      E     G+ A R+  FI  SL+
Sbjct: 24  LVWFRRDLRATDHAALHYALRHC-AQVWCVFVFDRDILEPLLARGLQADRRIEFIRQSLV 82

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           ++  +L+  G   IV      +        LD+         +F N  YE     RD+ +
Sbjct: 83  ELAGTLAAAGGGLIVLHDRAQTAIPALARALDA-------EAVFANHDYEPAANARDEAV 135

Query: 124 EKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PA 181
            + L  +     +F D  +     ILN   + + V+TP++ A ++     DLR  PV P 
Sbjct: 136 RQALAAQACALFTFKDQAIFERDEILNGQGKPFSVFTPYKNAWLRAAEPFDLRPYPVEPY 195

Query: 182 IRLTGPVTPS---NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           +    PV  +    +P      F+A    +   P G   A  +  +F   ++  Y  +RD
Sbjct: 196 LPALAPVPAAYRLPVPTIAQLGFRASNLAEIAMPTGASGAQALFEEFTG-RMGDYGRRRD 254

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PA++G S LS +L  G +S R    R+  E +       +GA  WL+ELIWR+FY  ++
Sbjct: 255 YPALRGPSYLSVHLRFGTISIRTL-ARVAHEAMLRGGADSAGAAVWLSELIWRDFYFMIL 313

Query: 296 AFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             +P V  G  F P  + I W   +       AW+   TG+P+IDAAM Q+   G+MHNR
Sbjct: 314 HHHPRVAAGAAFHPAYDAIRWQDGDTGERYFHAWRDAATGYPLIDAAMLQIRQSGYMHNR 373

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+TASFLVKDL VDWR GE+YF  QL D DLA+NNGGWQWAASTG D+ P+FRIFNP 
Sbjct: 374 LRMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPV 433

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
            Q ++FDPQG FIR +LP+L  +P +Y+H    AP + L +  + L  NYP P+V H  A
Sbjct: 434 TQSQKFDPQGRFIRKYLPQLAALPDKYLHAPWTAPEAVLAEAGVRLGDNYPRPLVQHDVA 493

Query: 467 CHHTLNQYYAAKK 479
              TL +Y A K+
Sbjct: 494 RQQTLRRYEAVKQ 506


>gi|149926765|ref|ZP_01915025.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
 gi|149824694|gb|EDM83910.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
          Length = 500

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 180/493 (36%), Positives = 250/493 (50%), Gaps = 38/493 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGISARQSHF 60
           S  L+W R DLR  DN AL+ A  + + +V  VF+       A P +      + R+  F
Sbjct: 21  SKGLMWFRRDLRTHDNAALFYALKHCE-QVHCVFVYDKTILDALPNK------ADRRVEF 73

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           I+ S + ++  L  +G     H    +D +   +     +  V  +F N+ YE   + RD
Sbjct: 74  IWESCMALKTKL--QGFGGDLHLM--YDHAETAIPDLATKLGVQAVFTNKDYEPAAIHRD 129

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             + K LQ + I    F D  +     +L  A + + V+TPF+ A ++ L    L   P 
Sbjct: 130 ITVGKTLQGKGIELFRFKDQAIFEEDEVLTQAGKFFSVFTPFKNACLKKLDAFHLTPYPS 189

Query: 180 PAIRLTGPVTPSNI--PRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            A R+      SN+  P      F+  +   M   GE+ AL     F      Y V  RD
Sbjct: 190 EA-RVGSLAKDSNLTAPSLDHMGFKRTNLLDMIKPGEEGALDAFEDFLNRMDKYKV-ARD 247

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PAI+G S LS +   G +S R+      + F         GA  WLNELIWR+FY  ++
Sbjct: 248 FPAIKGVSYLSVHNRFGTISIRRLAKAAYDRFK---FDGSEGAMGWLNELIWRDFYFQII 304

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
              P     K F P  ++I+W+ D     L +AW +G TG+P++DAA RQLN  G+ HNR
Sbjct: 305 YHRPDAAE-KAFKPEYDQIQWDADEKAQRLFKAWCEGKTGYPLVDAAQRQLNQTGFQHNR 363

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+TASFL KDL +DWR GE+YF   L D DL++NNGGWQWAAS+G D+ PYFRIFNP 
Sbjct: 364 LRMVTASFLTKDLGLDWRWGEKYFAEHLNDFDLSANNGGWQWAASSGCDAQPYFRIFNPY 423

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466
            Q ++FD  G FIR + PEL  +  +YIH P         +    L   YP P+V+H  A
Sbjct: 424 SQSEKFDADGKFIRKYCPELAKLSNKYIHNPAECPPFELQMAGVVLGETYPRPVVEHDVA 483

Query: 467 CHHTLNQYYAAKK 479
              TL +Y   KK
Sbjct: 484 RKKTLERYSVVKK 496


>gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
           51756]
 gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
           51756]
          Length = 476

 Score =  276 bits (707), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 175/499 (35%), Positives = 263/499 (52%), Gaps = 57/499 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  RNDLR+ D+ AL+ A       V+ V++        +G + R  H    SLL++Q 
Sbjct: 7   IVLFRNDLRLADHPALWYAAQRG--PVLPVYLRHAAD--SYGSAWRWWHG--ESLLKLQA 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
           +L+Q+G+       S    ++  L           +++NR+Y+ + +  D+ L+   +  
Sbjct: 61  ALAQRGLPLLLR--SGTAKAV--LPEIVRASGADAVYWNRRYDRDGIAEDQELKSLFKEL 116

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V  +SF  ++L+ P   L    Q Y+V+TPF KA++           P P         
Sbjct: 117 GVEARSFPGNLLVEPWEHLREG-QPYRVFTPFWKAMLAR------HRFPQPLAEPESYRA 169

Query: 190 PSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P+ IP   D       P  P           +GE+ A   LR F  E + +Y E R++P 
Sbjct: 170 PTAIPASEDLARWGWHPHHPDWSIGLARHWEVGEEAAWRRLRDFVDEGLAHYAEGRNLPG 229

Query: 239 IQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAF-----SWLNELIWREF 290
               S+LSPYL+ G +SPRQ W   +RL EE          GA+     ++L EL WREF
Sbjct: 230 KPFVSRLSPYLAHGEISPRQIWWHLSRLAEE---------QGAWRRNVDAFLRELGWREF 280

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             HL+  +P +   +P  P  ++  W +D   L+AW +  TG+PIIDA MR+L   GWMH
Sbjct: 281 SWHLLYHFPDLPR-EPLRPEFQRFPWRQDPAALRAWTRARTGYPIIDAGMRELWESGWMH 339

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RMI ASFLVKDL + W+ GE +F   L+D DLA+N+  WQW A  G D+ PYFR+FN
Sbjct: 340 NRVRMIVASFLVKDLRIPWQEGEAWFWDTLVDADLANNSASWQWVAGCGADAAPYFRVFN 399

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLN--YPLPIVD 462
           P +Q ++FDPQG ++R WLP+L  +P  +IHAP  W      L++  ++L   YP P+VD
Sbjct: 400 PVLQAQKFDPQGDYVRRWLPQLQRLPADHIHAP--WQAPAVVLEQAGIALGKEYPRPLVD 457

Query: 463 HKKACHHTLNQYYAAKKQS 481
           H +A    L  + A ++++
Sbjct: 458 HHEAREAALAAWEAIRREN 476


>gi|90020376|ref|YP_526203.1| deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
           2-40]
 gi|89949976|gb|ABD79991.1| Deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
           2-40]
          Length = 483

 Score =  276 bits (707), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 173/493 (35%), Positives = 256/493 (51%), Gaps = 48/493 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA--KVIAVFIA-TPEQWRQHGISARQSHFIYASLLQ 67
           L+WL N+LR++DN AL+AA  ++DA  +V+  +I  T   W   G +A    +++ SL  
Sbjct: 4   LLWLSNNLRLSDNPALHAAVDSADANGEVLPAYIKDTANPWPIQGAAAW---WLHHSLAA 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
              S+  KG V    +     D    +     Q ++  ++ ++ +E  EV+    + K  
Sbjct: 61  FTNSIKNKGGVLSLFE----GDPATLVPELISQNKIDAVYLSQGFEPYEVQLQANIHKWC 116

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            QH + CK F   +LL P + LN   + ++V+TP+ KA +        R+ P+P+  L  
Sbjct: 117 KQHNIECKRFAGHLLLNPDTHLNKQGKPFQVFTPYYKAAL--ATHTIPRAKPIPS-NLAK 173

Query: 187 PVTPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                 +P+                   +  +  GE+ A   LR+  ++K+  Y   RD 
Sbjct: 174 VWAAKKLPKSVALNKLKLLPNLNWADQFNSQWQPGEEGAHKNLREAIEDKIASYTRDRDF 233

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA+ GTS LS +L  G +SPRQ W ++  +       P      +L +L+WR+F   L+ 
Sbjct: 234 PAVDGTSLLSAHLRFGEISPRQIWQQVATQMDGEQCAP------FLRQLMWRDFSYALLH 287

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSH-----LLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            +P +   + F    EK  W K S+      L AW+ G TG+PI+DA MRQL   GWMHN
Sbjct: 288 HWPHIPQ-QAFKQQFEKFPWQKASNKNVAKQLHAWQTGTTGYPIVDAGMRQLWQTGWMHN 346

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMI ASFL K L + W  G ++F   L+D DLA+N  GWQW A  G D+ PYFRIFNP
Sbjct: 347 RVRMIVASFLTKHLRIHWHEGAKWFWDTLVDADLANNTAGWQWVAGCGADAAPYFRIFNP 406

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL----------SLNYPLPIV 461
            +QG++FD QG +I+ W+PEL  +P ++IHAP  WL   D+          +  YPLPIV
Sbjct: 407 VLQGEKFDKQGEYIKTWVPELAALPAKFIHAP--WLAPQDILQTAGISLGNNSTYPLPIV 464

Query: 462 DHKKACHHTLNQY 474
           DHK A    L  Y
Sbjct: 465 DHKYAREAALAAY 477


>gi|289617143|emb|CBI56211.1| unnamed protein product [Sordaria macrospora]
          Length = 554

 Score =  276 bits (706), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 160/460 (34%), Positives = 247/460 (53%), Gaps = 54/460 (11%)

Query: 13  WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W + DLR+ DN++L+ A      +   +I +++ +PE    H  +  +  F+  +L  ++
Sbjct: 114 WFKMDLRLHDNRSLWLASQKAQEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLEILK 173

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK---R 126
           + L   GI               W+++Y               E++E+RR+  L K    
Sbjct: 174 RDLEALGIPL-------------WIETY---------------EVDELRREARLVKIFAE 205

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVP-- 180
              +++ +   D+ ++ PG++ + +   Y VY+P+ +A I+++ +     ++   P+P  
Sbjct: 206 GDEKMVAEVVHDTCVVMPGALKSGSGGQYAVYSPWYRAWIKHVEENPDCLEIYEKPLPNP 265

Query: 181 -------AIRLTGPVTPS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
                  A   T P+ P+    N+P   D        ++P GE  AL  L KFC E +  
Sbjct: 266 PSTKSKYAHLFTCPIPPAPENKNLPDN-DETKARYRALWPAGEHEALKRLHKFCDENIGK 324

Query: 230 YVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIW 287
           Y E+RDIP+++G TS+LS + + G LS R      ++      L     G   W++E+ W
Sbjct: 325 YAERRDIPSVEGGTSKLSVHFASGTLSARTAIRAARDRNNTKRLNGGNEGIQRWISEVAW 384

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REFYRH++  +P VCM KPF P    I W+ +     AW  G TG+PIIDAAMRQ+ + G
Sbjct: 385 REFYRHVLVGWPYVCMNKPFKPLYSNITWSYNPTHFHAWTSGQTGYPIIDAAMRQVLSTG 444

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NRLRMI ASFL KDLL+DWR+GE YFM  L+DGD ASNNGGW +AAS G D  PYFR
Sbjct: 445 FMPNRLRMIVASFLAKDLLIDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFR 504

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           +FNP +Q ++FD  G +IR W+ EL ++    +     W+
Sbjct: 505 VFNPLLQSEKFDEGGEYIRRWVEELRDLEGGKLGGKGGWI 544


>gi|83746230|ref|ZP_00943284.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
 gi|83727196|gb|EAP74320.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
          Length = 560

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 182/499 (36%), Positives = 252/499 (50%), Gaps = 47/499 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISA-RQSHFIYASLL 66
           LVW R DLR  D+ AL+ A  +   +V   F+      +    HG+ A R+  FI A++ 
Sbjct: 66  LVWFRRDLRHIDHAALHYALRHCR-EVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAVE 124

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            ++ +L + G   IV         D +   + S   Q  V  +F N   E   + RD  +
Sbjct: 125 ALRGALREAGGELIVLH-------DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAV 177

Query: 124 EKRLQHRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-P 180
              L  R  C    F D V+     +LN   + Y V+TP++ A +  +   DLR+ P+ P
Sbjct: 178 RDALA-RQPCAWLDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEP 236

Query: 181 AIRLTG-------PVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
            +           P TPS     F      AI    P G   A  +L  F      Y+  
Sbjct: 237 HLHALARPPQGLAPATPSLEAMGFARSNLSAI--ALPTGMSGAEALLDDFATRMDDYHA- 293

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD PA++G S LS +L  G +S R     L       ++    GA +WL+ELIWR+FY 
Sbjct: 294 RRDYPAVRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYF 349

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            ++   P +  G  F P  ++I W   +       AW+   TG+P++DAAM Q+   G+M
Sbjct: 350 MILHHRPDLAGGASFRPEFDRIRWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYM 409

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRM+ ASFL+KDL VDWR GE YF   L D D A+NNGGWQWAAS+G D+ P+FRIF
Sbjct: 410 HNRLRMVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIF 469

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIV 461
           NP  Q ++FDPQG FIR +LP+L  +P +Y+HAP  W    D        L   YP PIV
Sbjct: 470 NPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAP--WTAPADVLKTAGVALGETYPRPIV 527

Query: 462 DHKKACHHTLNQYYAAKKQ 480
           +H  A   TL +Y  AK +
Sbjct: 528 EHAAARAATLERYAPAKVE 546


>gi|159898493|ref|YP_001544740.1| deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891532|gb|ABX04612.1| Deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 486

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 183/489 (37%), Positives = 258/489 (52%), Gaps = 33/489 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+TD++ALYAA   S   VI VFI          + A       A L  +  
Sbjct: 4   ICWFRRDLRLTDHRALYAAAEASAGAVIPVFILDDTILHDGYVGAALIAVTLAMLEALDH 63

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            L Q+G  ++ ++ Q       +  L     + + + +++NR Y    ++RD  ++  L+
Sbjct: 64  DLQQRGSRLIVRHGQ------PLAELQRLVSETQASGVYWNRDYLPYAIKRDSAVKHWLR 117

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQM-YKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + +   SF DSVL+ P  +     Q  Y VY  + K   +       + +P P+  +  
Sbjct: 118 EQGLQAHSFHDSVLVEPEGLKTKTEQKPYVVYGSYVKRWSELAYHQAEQLVPAPSKFVAP 177

Query: 187 PVTPSN--IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK----VYYYVEQRDIPAIQ 240
           P   ++  IP   D  F+    +  +GE  A   L +F   +    V  Y + R++PA  
Sbjct: 178 PSDLASLPIPSLADLGFELQQTIPQVGETIAQQRLAQFFDRRQKLSVLKYTKAREVPAEA 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-----KSGAFSWLNELIWREFYRHLM 295
           GTSQLS  L +G +S RQC   LK+  VDLL +P     + G  +WL EL WR++Y  L+
Sbjct: 238 GTSQLSVDLRMGTISIRQC---LKQA-VDLLTEPLNAEQRQGVDTWLKELAWRDYYTQLI 293

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P +  G    P  ++I W  D     AW+QG TG+PI+DA  RQLN + WMHNR+RM
Sbjct: 294 YHNPYMLNGS-LDPRYDQIIWRNDPSEFLAWQQGQTGYPIVDAGQRQLNQMAWMHNRVRM 352

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA-STGNDSVPYFRIFNPTIQ 414
           I+ASFL+KDLL+DWR GE YFM QL DGD  +NNGGWQWAA S+G  + PYFRIFNP  Q
Sbjct: 353 ISASFLIKDLLIDWRWGERYFMQQLCDGDPTANNGGWQWAAGSSGPSAQPYFRIFNPIAQ 412

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACH 468
            K+ DP G +IR ++PEL NVP  YIH P +            +  +YP P+V+H  A  
Sbjct: 413 SKKHDPDGQYIRRFVPELANVPDHYIHEPWTMPPAVQAHVGCVIGRDYPAPLVEHSFARE 472

Query: 469 HTLNQYYAA 477
             L  Y  A
Sbjct: 473 RALAAYRTA 481


>gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
 gi|133739808|emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
          Length = 493

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 180/493 (36%), Positives = 259/493 (52%), Gaps = 37/493 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL+ A   S  +V  VFI           + R+  FI+ASLL++ +
Sbjct: 8   LVWFRRDLRSVDHAALHHALAQS-RQVYCVFIFDRAILDALPRADRRVEFIHASLLELAQ 66

Query: 71  SLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +L     G++ Q+            +    ++  V  +F N  YE   + RD  +   LQ
Sbjct: 67  ALRALGGGLIVQHAWAETA------IPELAIELGVDAVFANHDYEPQAITRDAHVAAALQ 120

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIR 183
                  +F D V+     +L  A + + V+TP++ A ++ L     +A LR   + A  
Sbjct: 121 AAGRSLHTFKDQVVFEKNEVLTQAEKPFSVFTPYKNAWLKKLYAESNEATLRPYEIDAYA 180

Query: 184 ---LTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
              +  P +   IP   D  F+     D   P G Q A  +L  F  +++  Y + RD P
Sbjct: 181 DRFVNLPESKFPIPSLTDLGFEKTNLPDLNIPTGMQGAQDLLDAFA-DRMQRYDQTRDFP 239

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS ++  G +S R    R  +          +GA  WL+EL+WR+FY  ++  
Sbjct: 240 ALKGPSYLSVHVRFGTVSIRALARRALDAM--RTGTGGNGAAVWLSELVWRDFYFMILFQ 297

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +P V +   F    + I W    H   L QAW  G TG+P++DAAM QLN  G+MHNRLR
Sbjct: 298 HPHV-VDHAFKADYDAITWESGDHARRLFQAWCDGQTGYPLVDAAMAQLNQTGYMHNRLR 356

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+TASFL+KDL +DWR GE YF  +L D DLA+NNGGWQWA+S+G D+ PYFRIFNP  Q
Sbjct: 357 MVTASFLIKDLGIDWRWGEHYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPITQ 416

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--------LDKNDLSLNYPLPIVDHKKA 466
            ++FD QG FIR +LP+L  +  ++IHAP  W        +   ++  NYP P+V H +A
Sbjct: 417 SEKFDQQGKFIRRYLPQLAKLSDRHIHAP--WCAPALELRMAGVEIGNNYPGPLVQHDEA 474

Query: 467 CHHTLNQYYAAKK 479
              TL +Y   KK
Sbjct: 475 RARTLQRYAVVKK 487


>gi|207744141|ref|YP_002260533.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
           solanacearum IPO1609]
 gi|206595545|emb|CAQ62472.1| putative deoxyribodipyrimidine photolyase, class 1 protein
           [Ralstonia solanacearum IPO1609]
          Length = 522

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 182/499 (36%), Positives = 252/499 (50%), Gaps = 47/499 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISA-RQSHFIYASLL 66
           LVW R DLR  D+ AL+ A  +   +V   F+      +    HG+ A R+  FI A++ 
Sbjct: 28  LVWFRRDLRHIDHAALHYALRHCR-EVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAVE 86

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            ++ +L + G   IV         D +   + S   Q  V  +F N   E   + RD  +
Sbjct: 87  ALRGALREAGGELIVLH-------DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAV 139

Query: 124 EKRLQHRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-P 180
              L  R  C    F D V+     +LN   + Y V+TP++ A +  +   DLR+ P+ P
Sbjct: 140 RDALA-RQPCAWLDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEP 198

Query: 181 AIRLTG-------PVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
            +           P TPS     F      AI    P G   A  +L  F      Y+  
Sbjct: 199 HLHALARPPQGLAPATPSLEAMGFARSNLSAI--ALPTGMSGAEALLDDFATRMDDYHA- 255

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD PA++G S LS +L  G +S R     L       ++    GA +WL+ELIWR+FY 
Sbjct: 256 RRDYPAVRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYF 311

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            ++   P +  G  F P  ++I W   +       AW+   TG+P++DAAM Q+   G+M
Sbjct: 312 MILHHRPDLAGGASFRPEFDRIRWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYM 371

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRM+ ASFL+KDL VDWR GE YF   L D D A+NNGGWQWAAS+G D+ P+FRIF
Sbjct: 372 HNRLRMVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIF 431

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIV 461
           NP  Q ++FDPQG FIR +LP+L  +P +Y+HAP  W    D        L   YP PIV
Sbjct: 432 NPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAP--WTAPADVLKTAGVALGETYPRPIV 489

Query: 462 DHKKACHHTLNQYYAAKKQ 480
           +H  A   TL +Y  AK +
Sbjct: 490 EHAAARAATLERYAPAKVE 508


>gi|148358421|ref|YP_001249628.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
           Corby]
 gi|148280194|gb|ABQ54282.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
           Corby]
          Length = 471

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 176/491 (35%), Positives = 266/491 (54%), Gaps = 41/491 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  VI ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     + S  +  +E +  Y     V  +++NR YE     RDK ++  
Sbjct: 57  ALGKSLNQQGLSLVLRKGSPQEIILELVSQYG----VESVYWNRCYEPPVFARDKKIKLA 112

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I  +SF+ ++L  P +I N     +KV+TP+ K   Q L      ++P P +   
Sbjct: 113 LGEREIKAQSFNGNLLHEPWAIKNKNGDFFKVFTPYWKQCRQIL------NIPSPLMLTK 166

Query: 186 GP----VTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            P    +T  +I ++   P           +  GE+ A   L +F    +  Y   RD P
Sbjct: 167 RPRGIEITSDDIDKWKLLPAINWAARFSEYWTPGEKGAQKKLDEFIIHHLSGYKRDRDFP 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           A   TS+LSP+L  G +SP      L+    E+  DL     +    +L+EL WREF  +
Sbjct: 227 AKNATSRLSPHLHFGEISPWVILRALELTKLEQTCDL-----ASVEHFLSELGWREFSVY 281

Query: 294 LMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           L+  +P + C  + F    +   W  D  LL  W++G TG+P+IDA MR+L   G+MHNR
Sbjct: 282 LLYHFPKLDC--ENFRNEFDAFPWQNDEQLLTRWQKGMTGYPLIDAGMRELWATGYMHNR 339

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI ASFL KDLL+DWR+G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP 
Sbjct: 340 VRMIVASFLTKDLLIDWRLGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPV 399

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----NYPLPIVDHKKACH 468
           +Q ++FDP G +IR W+PEL  + +Q IH P  W D +  S+     YP PI++H++A  
Sbjct: 400 LQSQKFDPDGVYIRQWIPELAQLNSQSIHQP--WTDASASSIFLGNKYPKPIINHQEART 457

Query: 469 HTLNQYYAAKK 479
             L+ Y   KK
Sbjct: 458 KALSYYQQIKK 468


>gi|294341149|emb|CAZ89550.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As]
          Length = 497

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 178/512 (34%), Positives = 258/512 (50%), Gaps = 59/512 (11%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISA-RQ 57
            A   + + LVWLR DLR+ DN AL+AA    D KV   F+      +   Q G+ A R+
Sbjct: 12  SAVEKLPLGLVWLRRDLRLHDNAALHAALRACD-KVALAFVFDRDILDPLLQRGLQADRR 70

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI A++ ++  +L + G        S    + E + +   +     +F  R  E   +
Sbjct: 71  VEFILAAVAEIDAALREHGAALIVRHAS----AREAIPALAAELGAQTVFCGRDDEPEAL 126

Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-------QNL 169
            RD  +E+ L Q     ++  + ++     +L    + Y V+TP+R A +       Q  
Sbjct: 127 ARDAAVERALRQDGRALRTVKEHMIFERDEVLTAQGKPYSVFTPYRTAWLARYAAQPQQP 186

Query: 170 VQADLRSL-----------PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI 218
           V + + S            P+P +   G   PSN+               P+G   A  +
Sbjct: 187 VDSAVTSARLAALPAALRQPLPTLSELG-FAPSNLHAL----------KLPLGASGAAAL 235

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ----CWNRLKEEFVDLLIKP 274
           +  F + ++  Y + RD PA +G S LS +L  G +S R+     W R +          
Sbjct: 236 VDDFSR-RIDDYDQARDYPARKGPSYLSVHLRFGTVSVRELVAMAWARQQ--------AG 286

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
             GA  WL+EL+WR+FY  ++  +P V +   F P  ++I+W  D     AW +G TG+P
Sbjct: 287 SEGARVWLSELVWRDFYFQILFHHPHV-VNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYP 345

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           ++DAAMRQ+N  G+MHNRLRM+ ASFL KDL +DWR GE YF   L D DLA+NNGGWQW
Sbjct: 346 LVDAAMRQINQTGYMHNRLRMVVASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQW 405

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN 450
           AAS+G D+ PYFRIFNP  Q ++FD  G FIR ++PEL    ++ IH    AP + L   
Sbjct: 406 AASSGCDAQPYFRIFNPVAQSEKFDAGGDFIRRYVPELAQFASKDIHAPWKAPAALLQAA 465

Query: 451 DLSLN--YPLPIVDHKKACHHTLNQYYAAKKQ 480
            + L   YP+PIV H  A   TL +Y   K Q
Sbjct: 466 GVRLGSTYPVPIVRHDLARAETLERYAVVKAQ 497


>gi|170017540|ref|YP_001728459.1| deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20]
 gi|169804397|gb|ACA83015.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20]
          Length = 478

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 184/488 (37%), Positives = 251/488 (51%), Gaps = 35/488 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V +VW+R D RI DN AL AA  NSD+ V+ VFI  PEQ      S  QS F +AS    
Sbjct: 4   VSIVWIRRDFRIQDNLALAAATENSDS-VLLVFIVDPEQIETTA-SLNQSAF-FASAKAF 60

Query: 69  QKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           Q +L+ + I   V +    S F+     L        ++ L++N        +RD+ +  
Sbjct: 61  QANLANENIHLLVLKGTPESQFEKLTAALP------EISDLYFNFDERGYGRQRDQQVAH 114

Query: 126 RLQHRVICKS--FDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPV 179
             Q  +  K+  + D  L     I       Y+++TP+ K  I       V+A + SL  
Sbjct: 115 HCQTTLGLKTHAYIDYNLHSANEIKKADGAGYQIFTPYFKRWITLPKPTPVKASVTSLQG 174

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             +    P+             +  D      +GE  AL  L+ F +  +  Y  QRD+P
Sbjct: 175 KQMANIEPLHLHQEGLLTSLINEKHDKQLVGQVGEAKALQTLKDFIQSHLSEYDTQRDLP 234

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMA 296
            +  TS LS YL  G ++ R  +  +  E       P+S G  +++ EL WR++Y  + A
Sbjct: 235 FLDATSHLSRYLRTGEIAIRTIYQAVINE-------PESEGQQTFIKELAWRDYYNMIYA 287

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P     +   P  +KI W  + +    W+ G TGFPI+DAAMRQLN  GWMHNRLRMI
Sbjct: 288 MNPQQNT-QSLRPEFQKIAWRNNHNDFLLWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMI 346

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDLL+DWR GE+YF  QLLD D ASN GGWQWAASTG DSVPYFRIFNPT Q +
Sbjct: 347 VASFLTKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQWAASTGTDSVPYFRIFNPTRQSQ 406

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470
           +FDP G FI+ ++PEL+ +    IH P    D      +  L  +YP P+V HK+A    
Sbjct: 407 KFDPDGKFIKQFVPELSQITNDKIHEPQLLTDLEQKEFQVTLDKDYPKPMVTHKQARLRA 466

Query: 471 LNQYYAAK 478
           +  Y  +K
Sbjct: 467 IEVYEQSK 474


>gi|254418176|ref|ZP_05031900.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
 gi|196184353|gb|EDX79329.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
          Length = 488

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 176/490 (35%), Positives = 250/490 (51%), Gaps = 40/490 (8%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    ++W R DLR+ DN ALY A       ++ VFI   +  R  G  A    ++ 
Sbjct: 4   ACVATKPVVLWFRRDLRLNDNPALYHAVATG-RPILPVFILDRDPDRPAG--AASLWWLD 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL ++G      +     DS+  L S         LF NR +E     RD  
Sbjct: 61  KSLRALDDSLRERGSRLILRRG----DSLTQLQSLIEDTGADALFMNRLFEPAAFARDAE 116

Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSL 177
           +   L+   V C+ F+ S+L  PG++LN +   YKV+TPF KAL+            R +
Sbjct: 117 IAHELKSAGVDCRGFNGSLLARPGAVLNGSDAPYKVFTPFMKALLATAEPPPPTTAPRRI 176

Query: 178 PVPAIRLTGPV-------TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
             P    T  +       T S+  + FD+           GE  A   L  F    +  Y
Sbjct: 177 ATPDAVQTESIDDWRLHPTRSDWSKGFDWT---------PGEAGADAALSDFLARGLKTY 227

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD PA+  TS+LSP+L  G +SP +   R +       + P   A  ++ EL WR+F
Sbjct: 228 AKGRDHPALPTTSRLSPHLHWGEISPWRAAQRARGAADAGAV-PAGEADKFVAELGWRDF 286

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             HL+  +P++   + F P  E + W  D   L+AWK+G TG+P++DA MRQL T GWMH
Sbjct: 287 SAHLLHHFPTIT-DRAFRPEYESMPWRGDPEGLEAWKRGRTGYPLVDAGMRQLWTTGWMH 345

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D DLASN   WQW A +G D+ PYFRIFN
Sbjct: 346 NRVRMVVASFLVKHLLIDWREGEAWFWDTLVDADLASNVQNWQWVAGSGADAAPYFRIFN 405

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVD 462
           P  QG++FD  G ++R W+PEL  +P +++ +P  W    +        L  +YP PI+D
Sbjct: 406 PITQGEKFDATGGYVRRWVPELRRLPDRWLPSP--WTAPPEVLRDAGVRLGKDYPHPILD 463

Query: 463 HKKACHHTLN 472
           H +A    L+
Sbjct: 464 HAQARARALD 473


>gi|194014306|ref|ZP_03052923.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061]
 gi|194013332|gb|EDW22897.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061]
          Length = 477

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 168/488 (34%), Positives = 255/488 (52%), Gaps = 25/488 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M + ++W R D+R+ D+ AL  A       + K++A++   P  + +  +     HF   
Sbjct: 1   MEIVVIWFRRDMRLDDHIALSKAITYAKKHEYKLLALYHLDP-FFTEMEMDINNEHFFQN 59

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
               V+++   +  V   H     DD +           +  +F+N        RRDK +
Sbjct: 60  LAHFVKEARESQVYVHLLH-----DDVLRAFQQVMEVYDIKAVFFNEDEVGIGQRRDKQV 114

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRSLP 178
              L+ + I   ++ D+ L     IL      Y+V+TP+    RK   Q +++ D     
Sbjct: 115 TDFLEKKGIHVSTWQDTHLHGARDILKADGSHYQVFTPYYQSWRKQEKQPVIKVDKSFFS 174

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   P++     +  +           IG   A++ L +F ++++  Y E+RDIP+
Sbjct: 175 SEHTICDEPLSQKGNDKLRELIKGCSRKFDQIGSDKAMNTLHQFIQKRLTRYHEKRDIPS 234

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS+LS +L  G +S R  ++ + EE     +    G  +++ EL WR+FY  + A Y
Sbjct: 235 VFGTSKLSRFLKTGTISIRTIFHAIYEE----ALYEDEGRETFIKELAWRDFYHMIYAHY 290

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +   K      + ++WN+D  L +AW +G TGFP++DA MRQLN  GWMHNRLRM+TA
Sbjct: 291 PEM-KEKEINSAFQGMKWNEDETLFEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTA 349

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KD L+DWR GE YF  +L+D D ASN GG+QWAAS G D+VPYFRIFNPT Q KRF
Sbjct: 350 SFLTKDYLIDWRKGESYFAKKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPTTQSKRF 409

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKN-----DLSLNYPLPIVDHKKACHHTLN 472
           DP G  IR ++PEL  V  ++IH P    +D+       L   YPLP VDH++     ++
Sbjct: 410 DPSGELIRKYVPELERVDEKWIHEPSKMPIDEQLKSGCVLGDTYPLPAVDHQERRKKAIS 469

Query: 473 QYYAAKKQ 480
            +  AK+Q
Sbjct: 470 LFEEAKQQ 477


>gi|37520353|ref|NP_923730.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
 gi|35211346|dbj|BAC88725.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
          Length = 479

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 172/479 (35%), Positives = 245/479 (51%), Gaps = 18/479 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+ +VW R DLR+ DN AL+ A      +V+AVFI  P    +   +  + +F+  S+L+
Sbjct: 3   SIAIVWHRRDLRVHDNPALWQASRTG-GQVLAVFIVDPTIVERDDTAPARIYFLRESVLE 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK+    G            + ++ L +         +++N   E     RD    + L
Sbjct: 62  LQKAYRTIGGRL----AVRVGEPVQQLVALAQAVGAGAVYFNDDIEPYARERDARAAEAL 117

Query: 128 QHRVICKSFDDSVLL-PPGSILNHAL-QMYKVYTPFRK---ALIQNLVQADLRSLPVPAI 182
           +   I       +LL P G +L  A  + Y VYTPF +   A  +         L  P +
Sbjct: 118 RAAGITVHACAEILLHPAGEVLTAAGGKPYTVYTPFWRQWSAKPKPKPFPTPERLEAPTV 177

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                   + + R F     A + +   GEQ+ L  L  F +E +Y Y E+RD+P   GT
Sbjct: 178 EEQSFPELAQLGRPF-----AGELLVSPGEQSGLEQLEAFAREGLYRYGERRDLPGCDGT 232

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           S+LS +L  G +  R  W R  + +      + ++G   W  EL WREFY++ +   P +
Sbjct: 233 SRLSAHLKFGTVGIRAVWARTMDAWKQAEHDRDRAGLAVWQQELGWREFYKYELFHLPQL 292

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G+PF    E  +W++D    + W QG TG+PI+DAAMRQLNT+ WMHNRLRMI ASFL
Sbjct: 293 A-GRPFRREFENFQWDEDQERFERWCQGETGYPIVDAAMRQLNTVSWMHNRLRMIVASFL 351

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDLL+ +  GE YFM +L+DGDL++NNGGWQWAAS G D  P  RIFNP+ Q  R+DP+
Sbjct: 352 TKDLLLPYGWGERYFMQKLVDGDLSANNGGWQWAASVGTDPKP-LRIFNPSTQAGRYDPK 410

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             FIR WLPEL  V T  +               Y  PIV+HK+       +Y A + Q
Sbjct: 411 AVFIRRWLPELEGVDTALLVTSERLPPLMRAQHRYAQPIVEHKRQQQVFKERYRAVRAQ 469


>gi|288958781|ref|YP_003449122.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
 gi|288911089|dbj|BAI72578.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
          Length = 504

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 167/490 (34%), Positives = 251/490 (51%), Gaps = 29/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +VW RNDLR+ DN AL AA   +  +   VI ++I   E      +   Q  +++ SL +
Sbjct: 21  IVWFRNDLRLADNPALTAAAQMAGERGGAVIPLYILEEETGDPWTLGGAQRWWLHGSLER 80

Query: 68  VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +    ++ G  +V +  + +        LD+   +     + +NR+Y   +  RD  +++
Sbjct: 81  LATCCARHGSPLVLRRGEPAAV------LDALIAETGAGCVLWNRRYAPAQTARDAAIKQ 134

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVP 180
            L+ R I  +SF+  +L  P ++ N +   +KV+TPF + L              +L  P
Sbjct: 135 GLKARGIDARSFNAGLLAEPWTVRNKSGGSFKVFTPFWRHLSATLTPPPPTRAPAALKAP 194

Query: 181 AIRLTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           A    G       +P         +   +  GE  AL  L  F    V  Y  +RD P  
Sbjct: 195 ATAPAGDALEGWGLPPTAPDWAAGLRKRWVPGETAALSHLADFLDGPVGVYATERDRPDR 254

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS LSP+L+ G + PRQ W+  +        +  +G   +L E+ WREF  HL+   P
Sbjct: 255 HGTSTLSPHLAFGEIGPRQVWHAARHAAE-ARPELAAGIDFFLREVGWREFQYHLLHHAP 313

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   +P  P      W +D+  LQAW++G TG+PI+DA MRQL   GWMHNR+RMI AS
Sbjct: 314 ELPE-RPLDPRFADFPWREDAAGLQAWRRGRTGYPIVDAGMRQLWETGWMHNRVRMIVAS 372

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVKDLL+ W+ GE +F   L+D DLA N G WQW A  G D+ P+FR+FNP +QG++FD
Sbjct: 373 FLVKDLLLPWQEGERWFWDTLVDADLAQNAGNWQWVAGCGADAAPFFRVFNPVLQGEKFD 432

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTL 471
           P G ++R ++PEL+ +P ++IH P  W    +        L  +YP PI+DH  A    L
Sbjct: 433 PDGDYVRRYVPELDRLPPRWIHQP--WTAPTEILRQAGIRLGADYPRPILDHGAARDRAL 490

Query: 472 NQYYAAKKQS 481
             Y   K ++
Sbjct: 491 ALYNERKAKA 500


>gi|187927713|ref|YP_001898200.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
 gi|187724603|gb|ACD25768.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
          Length = 518

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 178/498 (35%), Positives = 258/498 (51%), Gaps = 49/498 (9%)

Query: 11  LVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATP-EQWRQHGISA-RQSHFIYASLLQ 67
           LVW R DLR  D+ AL YA  H  +   + VF     +     G+ A R+  FI AS+ +
Sbjct: 21  LVWFRRDLRHFDHAALHYALRHCREVYCVFVFDRDILDALLARGLQADRRIEFIRASIEE 80

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           ++ +L + G   +V   H      +    L+       +  +F N   E +   RD+ + 
Sbjct: 81  LRSALREAGGDLMVVHDHPRHAIPEIARKLN-------IEAVFANHDEEPSAQARDEAVR 133

Query: 125 KRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           K L  +  C  FD  D V+     ILN   + Y V+TP++ A +  L   DLR+ P    
Sbjct: 134 KVLAQQP-CAWFDFKDQVIFERDEILNGQGRPYGVFTPYKNAWLAALTPFDLRAYPTEPY 192

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYV 231
            L     P   P    +P  A++ M            P G      +L +F ++++  Y 
Sbjct: 193 -LGALARP---PEALAHPTPALEAMGFAHTNLSEIALPTGMSGGQALLDEF-EDRMDDYH 247

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            +RD PA++G S LS +L  G +S R    R        +++   GA +WL+EL+WR+FY
Sbjct: 248 ARRDFPAVRGPSYLSTHLRFGTVSIRTLAARAHAA----MLRGSRGAATWLSELVWRDFY 303

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
             ++   P +  G  F P  ++I W   +      +AWK   TG+P++DAAM Q+   G+
Sbjct: 304 FMILHHRPDLADGAAFHPEFDRIRWVDGDTGDARFEAWKGAQTGYPLVDAAMLQIFQSGY 363

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM+ ASFL+KDL +DWR GE+YF   L D D ++NNGGWQWAAS+G D+ P+FRI
Sbjct: 364 MHNRLRMVAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWFRI 423

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPI 460
           FNP  Q ++FDPQG FIR +LP+L  +P +YIHAP  W    +        L   YP PI
Sbjct: 424 FNPVTQSEKFDPQGRFIRKYLPQLAKLPDKYIHAP--WTAPANVLKEAGVVLGETYPRPI 481

Query: 461 VDHKKACHHTLNQYYAAK 478
           +DH  A   TL++Y   K
Sbjct: 482 IDHAGARAATLDRYAVTK 499


>gi|294055436|ref|YP_003549094.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
           45221]
 gi|293614769|gb|ADE54924.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
           45221]
          Length = 476

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 168/475 (35%), Positives = 255/475 (53%), Gaps = 21/475 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW RNDLR +DN AL AA    +A ++ VFI       +  + A    +++ SL +  +
Sbjct: 7   IVWFRNDLRFSDNAALAAAIAEGNA-ILPVFIRDQVSEGRWPMGAASKWWLHESLKRFAQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           S +  G    +       DS+  L +   +   T +++NR+YE +   +D  +++ L + 
Sbjct: 66  SWNSCGGDLIFRNG----DSLAELRAIAAESGATSIYWNRRYEGHLREQDAQIKRELFED 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVPAIRLT 185
            +  KS++ S+L  P +I N   + YKVYTP+ KA+    +   V  DL ++  P     
Sbjct: 122 GLEVKSYNSSLLNEPHTIGNKEGRPYKVYTPYFKAVKDRPVARPVVPDLTAMAFPDELPQ 181

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                +      +  ++  +  +   E+ A   + +F   +V  Y   RD P + GTS L
Sbjct: 182 SLALDALDLLPSNQWYRKFESKWEPSEEGAKQQVDEFLSLRVERYDTDRDRPDLDGTSAL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G + PRQ  + L E   DL    + G F +L E+ WREF  +++  +P      
Sbjct: 242 SPYLHFGQIGPRQLVHEL-ELRADL---EEQGPFIFLKEIYWREFAYNVLYHFPRTAE-S 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P  P  E   W +++ LL  WK+G TG+PI+DA MRQL   GWMHNR+RMI +S LVK L
Sbjct: 297 PLQPQYESFPWEQNADLLSLWKRGKTGYPIVDAGMRQLWQTGWMHNRVRMIVSSLLVKHL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DW+ G  +F   L+D DLASN  GWQW+   G D+ PYFRIFNP IQGK+FDP+  ++
Sbjct: 357 LQDWKEGARWFWDTLVDADLASNTLGWQWSGGCGADAAPYFRIFNPMIQGKKFDPEALYV 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQY 474
           R ++PEL+ +P +YIH P    D+       +L ++YP P+V+H       L+ Y
Sbjct: 417 RRFVPELSRLPNKYIHEPWEAPDEVLAEAGIELGVDYPYPVVEHAVGRQRALSAY 471


>gi|312114970|ref|YP_004012566.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220099|gb|ADP71467.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 484

 Score =  273 bits (698), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 177/503 (35%), Positives = 260/503 (51%), Gaps = 42/503 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQ 57
           M  ++  +  LV  R DLR+ D+ AL AA   + A V+ V+I    TP +WR  G S   
Sbjct: 1   MPLSSRAAPALVLFRRDLRLADHPALSAAA-ETGAPVLPVYILDDETPGRWRMGGAS--- 56

Query: 58  SHFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
             ++Y SL  +   L  +G  +V ++ +          L     +     + + R YE  
Sbjct: 57  RWWLYQSLRSLGADLEARGSRLVLRHGETKRV------LGELIEETGARSVLFTRGYEPY 110

Query: 116 EVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +   +  L+  L+ R V  + F   +L+ P SI N A + ++V+TPF +AL Q    A  
Sbjct: 111 QRALEGRLKPSLEARGVSLRRFGGQILVEPESIANLAGEPFRVFTPFFRALSQRGAPAT- 169

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223
              P+PA +      P + PR       A++P  P            GE  A   L  F 
Sbjct: 170 ---PLPAPQKL--AAPDSWPRSDALASLALEPTRPDWAGGIRAAWRPGETAARERLTAFI 224

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           +  +  Y  +RD P I GTS+LSP+L+ G + PRQ W+ ++           + A+  L 
Sbjct: 225 EAALPSYRTRRDEPGIDGTSRLSPHLAFGEIGPRQIWHAVQAAAEAAGDHAAADAY--LR 282

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           E+ WREF  HL+  +P +    PF P      W  D+  L+AW++G TG+PI+DA MRQL
Sbjct: 283 EVGWREFSYHLLFHFPHLPEA-PFRPEFTAFPWRDDADALEAWQRGRTGYPIVDAGMRQL 341

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNR+RMI ASFL+K LL  W+ G ++F   L+D DLA+N   WQW A +G D+ 
Sbjct: 342 WQTGWMHNRVRMIVASFLIKHLLSPWQTGADWFWDTLVDADLANNAASWQWVAGSGADAA 401

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--YP 457
           PYFRIFNP +QG++FDP+G ++R ++PEL  +P   IH P     + L    ++L   +P
Sbjct: 402 PYFRIFNPVLQGEKFDPRGDYVRAFVPELAKLPASLIHKPWTASAAALRDAGVTLGETWP 461

Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480
            PIVDH  A    L  + A KK+
Sbjct: 462 HPIVDHAAARARALTAFAAVKKK 484


>gi|209559671|ref|YP_002286143.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           NZ131]
 gi|209540872|gb|ACI61448.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           NZ131]
          Length = 469

 Score =  273 bits (697), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 183/492 (37%), Positives = 257/492 (52%), Gaps = 48/492 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEVRRD 120
           +K L          +C   D  + + D   C +Q +T+L       F   +     +R  
Sbjct: 59  RKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQ 108

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           K  +   ++ +   ++ D  L     I+N + Q YKV+TP+ + + QN  +     + + 
Sbjct: 109 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKVELS 167

Query: 181 AIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             R     TP ++ R    F D  +Q +       +Q     L +F ++++  Y   RD 
Sbjct: 168 QGRWLNLETPDDVLRTVESFKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHANRDF 222

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295
           PA  GTS+LSP+L IG +  R  ++ +++        P S G  ++L EL WR+FY  + 
Sbjct: 223 PAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYNMVY 275

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP     +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRM
Sbjct: 276 VAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRM 334

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL KDLL D R+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QG
Sbjct: 335 IVASFLTKDLLCDGRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQG 394

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACH 468
           KRFDP+G FI+ +LP+L +VP  Y+  P   + KN        +  +Y  PIVDH K   
Sbjct: 395 KRFDPKGEFIKAYLPQLEHVPENYLLEPGK-MPKNLQESVSCIIGTDYAQPIVDHAKQRE 453

Query: 469 HTLNQYYAAKKQ 480
             + +Y  AK++
Sbjct: 454 QAIAKYEWAKEK 465


>gi|207728124|ref|YP_002256518.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
           solanacearum MolK2]
 gi|206591369|emb|CAQ56981.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
           solanacearum MolK2]
          Length = 522

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 186/500 (37%), Positives = 253/500 (50%), Gaps = 49/500 (9%)

Query: 11  LVWLRNDLRITDNKAL-YAACHNSDAKVIAVF---IATPEQWRQHGISA-RQSHFIYASL 65
           LVW R DLR  D+ AL YA  H  +     VF   I  P   R  G+ A R+  FI A++
Sbjct: 28  LVWFRRDLRHIDHAALHYALRHCREVFCAFVFDRGILDPLLAR--GLRADRRVEFIRAAV 85

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             ++ +L + G   IV         D +   + S   Q  V  +F N   E   + RD  
Sbjct: 86  EALRGALREAGGELIVLH-------DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAA 138

Query: 123 LEKRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV- 179
           +   L  R  C  FD  D V+     +LN   + Y V+TP++ A +  +   DLR+ P+ 
Sbjct: 139 VRDALA-RQPCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIE 197

Query: 180 PAIRLTG-------PVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
           P +           P TPS     F      AI    P G   A  +L  F      Y+ 
Sbjct: 198 PHLHALARPPQGLAPATPSLEAMGFARSNLSAI--ALPTGMSGAKALLDDFATRMDDYHA 255

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            +RD PA++G S LS +L  G +S R     L       ++    GA +WL+ELIWR+FY
Sbjct: 256 -RRDYPAVRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFY 310

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
             ++   P +  G  F P  ++I W   +       AW+   TG+P++DAAM Q+   G+
Sbjct: 311 FMILHHRPDLADGASFRPEFDRIRWVEGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGY 370

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM+ ASFL+KDL VDWR GE YF   L D D A+NNGGWQWAAS+G D+ P+FRI
Sbjct: 371 MHNRLRMVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRI 430

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPI 460
           FNP  Q ++FDPQG FIR +LP+L  +P +Y+HAP  W    D        L   YP PI
Sbjct: 431 FNPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAP--WTAPADVLKTAGVALGETYPQPI 488

Query: 461 VDHKKACHHTLNQYYAAKKQ 480
           V+H  A   TL +Y  A+ +
Sbjct: 489 VEHAAARAATLERYAPAQVE 508


>gi|160897024|ref|YP_001562606.1| deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
 gi|160362608|gb|ABX34221.1| Deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
          Length = 493

 Score =  272 bits (696), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 183/495 (36%), Positives = 250/495 (50%), Gaps = 30/495 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V LVWLR DLR+ D+ ALY A      +V  VFI   +       + R+  FI  SL  +
Sbjct: 7   VGLVWLRRDLRLADHAALYHALRQCR-QVHCVFIFDDDILAPLPCADRRVEFICQSLSGL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L Q                 E +     Q     +F N   E + + RD  + + L 
Sbjct: 66  DDALRQASGRADTGLIVRRGQPAEQIPDLARQLGAQAVFCNWDDEPDALARDTRVRQALA 125

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------- 180
              V   SF D ++     +L  A   + V+TP++ A ++ +    L + P         
Sbjct: 126 AEGVALHSFKDHMVFARDEVLTQAGAPFSVFTPYKNAWLRQITPFFLSAYPSERDLPERL 185

Query: 181 AIRLTGPVTPSNIPRFFDYPFQA--IDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           A R  G   P  +P   D  F+A  +D +  P G   A  +L  F   ++  Y + RD P
Sbjct: 186 APRPEGERRP--VPTAADLGFEAGTLDGLRLPTGCAGAEELLADFLP-RLPRYKQARDFP 242

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S R+   RL  E          GA +WL+ELIWR+FY  ++A 
Sbjct: 243 AVKGPSYLSVHLRFGTVSIRRL-ARLAWEQTQSQPHDAEGAATWLSELIWRDFYFQILAH 301

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +P V     F P  + I W+       L  AW +G TG+P++DAAMRQLNT G+MHNRLR
Sbjct: 302 HPHVVHAS-FKPAYDAIVWDTGPEADALYAAWCEGRTGYPLVDAAMRQLNTTGYMHNRLR 360

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFLVKDL +DWR GE +F  QL D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q
Sbjct: 361 MVAASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQ 420

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHKKA 466
            ++FD    FI  ++PEL  +P    HAP  W  +          L  +YP P+VDH  A
Sbjct: 421 SQKFDADARFIERYVPELARLPAALRHAP--WQARPLELAEAGVVLGTDYPHPVVDHAAA 478

Query: 467 CHHTLNQYYAAKKQS 481
              TL +Y   K+ S
Sbjct: 479 RERTLARYGVVKQAS 493


>gi|89900170|ref|YP_522641.1| deoxyribodipyrimidine photolyase [Rhodoferax ferrireducens T118]
 gi|89344907|gb|ABD69110.1| Deoxyribodipyrimidine photo-lyase type I [Rhodoferax ferrireducens
           T118]
          Length = 492

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 175/492 (35%), Positives = 251/492 (51%), Gaps = 36/492 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ DN AL  A      ++  VF+   +       + R+  FI ASL ++  
Sbjct: 9   LMWFRRDLRVIDNAALCLALAACR-QLHCVFVFDRDILDTLPRADRRVEFIRASLCELDV 67

Query: 71  SLSQ------KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +L Q       G++ ++   S      E + +     +V  +F    YE   + RD  + 
Sbjct: 68  ALGQLSGKAGVGLIVRHAVAS------EEIVTLAKTLQVQAVFAAHDYEPQALARDARVR 121

Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVP 180
             L H  ++  +  D V+     IL+     Y V+TP++   +  +    LR   + PV 
Sbjct: 122 GALAHVGIVLHTCKDHVIFENREILSKTGTPYGVFTPYKNTWLATVTPQHLRHHDATPVA 181

Query: 181 AIRLTGPVTPSN-IPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              +  P      +P      F+  +      P G      +   F  E++  Y E RD+
Sbjct: 182 QALVPRPEGLQQPVPTLAAIGFEKTNLSQLKIPTGASGGARLFEDFF-ERMDSYHETRDL 240

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA++G S L  +L  G +S RQ    L    +   I+   GA  WL ELIWR+FY  ++A
Sbjct: 241 PAVKGPSYLGVHLRFGTVSVRQ----LAATALQRQIQGSRGAAVWLGELIWRDFYFSILA 296

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P V  G  F P  + I+W    H   L QAW +G TG+P++DAAM Q+N  G+MHNRL
Sbjct: 297 NFPHVAQGA-FKPEYDAIKWEHGKHADSLFQAWCEGRTGYPLVDAAMAQINQTGYMHNRL 355

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+  SFLVKDL +DWR GE+YF   L D DLA+NNGGWQW +S+G D+ PYFRIFNP  
Sbjct: 356 RMVAGSFLVKDLGIDWRWGEKYFARHLNDFDLAANNGGWQWVSSSGCDAQPYFRIFNPVT 415

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKAC 467
           Q ++FD  G FIR +LP+L  +P++ IHAP +       ++   L  NYP PIV H  A 
Sbjct: 416 QSEKFDADGKFIRRYLPQLARLPSKVIHAPWTAQALELQMEGVTLGQNYPAPIVAHAAAR 475

Query: 468 HHTLNQYYAAKK 479
             TL +Y   KK
Sbjct: 476 ALTLQRYAVVKK 487


>gi|307151428|ref|YP_003886812.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
 gi|306981656|gb|ADN13537.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
          Length = 476

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 169/470 (35%), Positives = 248/470 (52%), Gaps = 29/470 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S  K++ +F   P    +  ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNIGLSAARQKS-PKIVGIFCLDPNILNKDDVAPARVTYLIGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      +     +  + +       + + +F+N   E     RD+ +   LQ +
Sbjct: 65  QYQQAGSQLLILR----GEPSQAIPRLAATLKASAVFWNLDVEPYAKNRDEQVINVLQEK 120

Query: 131 VICK-SFDDSVLLPPGSILNHALQMYKVYTPF--------RKALIQNLVQADLRSLPVPA 181
            I + +F D +L  PG ++  +   YKV+TPF        +++ +Q L    L+ L    
Sbjct: 121 GIARENFWDQLLHAPGQLVTQSKDYYKVFTPFWRNWSKLKKQSPLQKL--EGLKGLTEEE 178

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           + LT      ++P      +   +P+    GE  A   L +FC   +  Y EQR+ PA+ 
Sbjct: 179 LTLTINAGVIDLPTAKKLGYAWENPLLLDPGETAAKKRLEEFCSSAINEYQEQRNFPAVD 238

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAFYP 299
           GTS+LS  L  G +  R  W    E + +    + +    +W  EL WREFY+H M F+P
Sbjct: 239 GTSRLSAALKFGAIGIRTVWKATLEVYENSRSDEARKSIETWQQELAWREFYQHCMYFFP 298

Query: 300 SVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +  G   K F        W  +    QAW +G TG+PI+DAAMRQLN   WMHNR RMI
Sbjct: 299 ELAEGSYRKDF----RSFPWQNNEDYFQAWCEGKTGYPIVDAAMRQLNETAWMHNRCRMI 354

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D  P  RIFNP  Q +
Sbjct: 355 VASFLTKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQ 413

Query: 417 RFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465
           +FDP+G +IR WLPEL +V T++ I      L++      YP PIVDHKK
Sbjct: 414 KFDPEGEYIRQWLPELRSVDTEFLISGKIPSLER--YQCGYPEPIVDHKK 461


>gi|296136973|ref|YP_003644215.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
 gi|295797095|gb|ADG31885.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
          Length = 497

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 175/500 (35%), Positives = 253/500 (50%), Gaps = 37/500 (7%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISA-RQS 58
           A   + + LVWLR DLR+ DN AL+AA    D KV   F+      +   Q G+ A R+ 
Sbjct: 13  AVEKLPLGLVWLRRDLRLHDNAALHAALRACD-KVALAFVFDRDILDPLLQRGLQADRRV 71

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            FI A++ ++  +L ++G        S    + E +     +     +F  R  E   + 
Sbjct: 72  EFILAAVAEIDAALRERGAALIVRHAS----AREAIPVLAAELGAQAVFCGRDDEPAALA 127

Query: 119 RDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-------QNLV 170
           RD  +E+ L Q      S  + ++     +L    + Y V+TP+R A +       Q  V
Sbjct: 128 RDAAVERALRQDGRALHSVKEHMIFERDEVLTAQDKPYSVFTPYRTAWLARYAAQPQQPV 187

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
            + + S  + A+          +      P        P+G   A  ++  F + ++  Y
Sbjct: 188 DSAVTSARLAALPAALQQPLPTLSELGFAPSNLHALKLPLGASGASALVDDFSR-RIDDY 246

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQ----CWNRLKEEFVDLLIKPKSGAFSWLNELI 286
            + RD PA +G S LS +L  G +S R+     W R +            GA  WL+EL+
Sbjct: 247 DQARDYPARKGPSYLSVHLRFGTVSVRELVAMAWARQQ--------AGSEGARVWLSELV 298

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR+FY  ++  +P V +   F P  ++I+W  D     AW +G TG+P++DAAMRQ+N  
Sbjct: 299 WRDFYFQILFHHPHV-VNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQT 357

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+ ASFL KDL +DWR GE YF   L D DLA+NNGGWQWAAS+G D+ PYF
Sbjct: 358 GYMHNRLRMVVASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYF 417

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPI 460
           RIFNP  Q ++FD  G FIR ++PEL  + ++ IH    AP + L    + L   YP PI
Sbjct: 418 RIFNPVAQSEKFDAGGDFIRRYVPELAQLASKDIHAPWKAPAALLQAAGVRLGSTYPAPI 477

Query: 461 VDHKKACHHTLNQYYAAKKQ 480
           V H  A   TL +Y   K Q
Sbjct: 478 VRHDLARAETLERYAVVKAQ 497


>gi|154250969|ref|YP_001411793.1| deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
           DS-1]
 gi|154154919|gb|ABS62136.1| Deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
           DS-1]
          Length = 475

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 170/494 (34%), Positives = 259/494 (52%), Gaps = 38/494 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + S  ++W R DLR+  +     A   +   VI +FI  P    + G ++R   +++ SL
Sbjct: 2   SASPAILWFRRDLRL--DANPALAAAMARGPVIPLFILDPAD--RPGAASRW--WLHGSL 55

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + +SL++ G      + S      E L +   +     +F+NR YE + + RDK L+ 
Sbjct: 56  EALGESLARLGAPLILRRGS----PSEILPALTAETDARAIFWNRLYEPHLIGRDKALKS 111

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L  + I  +SF+ S+L  P  +   +   YKV+TPF ++L Q    A     P PA + 
Sbjct: 112 ALTAQGIEVESFNGSLLAEPWQVRTQSGDPYKVFTPFWRSLAQMPFPA-----PHPAPKK 166

Query: 185 TGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              ++P        +  +   P         +  GE+ A   L  F  + +  Y E RDI
Sbjct: 167 CAGLSPLPSDDLASWSLRPSKPDWAGGLRATWQPGERAAQSRLAAFIDDAMVGYREARDI 226

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA +GTS+LSP+L  G +SP + W+ ++          ++G  ++L EL WR+F  HL+ 
Sbjct: 227 PAAEGTSRLSPHLHWGEVSPHRIWSAVEAATAAHPSGAEAGR-AFLRELAWRDFAHHLLF 285

Query: 297 FYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P +        W  + +   W +D+    AW +G TG+PI+DA MRQL   GWMHNR+
Sbjct: 286 HWPDIAREN----WKSQFDAFPWKEDTAAFTAWTKGETGYPIVDAGMRQLWQTGWMHNRV 341

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFLVK L+VDWR G E+F + L+D DLA N   WQW A +G D+ PYFRIFNP +
Sbjct: 342 RMIAASFLVKHLMVDWRRGAEWFENTLVDADLAVNRASWQWVAGSGADAAPYFRIFNPVL 401

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKAC 467
           QG++FD  G ++R ++PEL  +  ++IH    AP + L K  ++L   YP P+VDH  A 
Sbjct: 402 QGEKFDGDGAYVRAFVPELAKLDARFIHKPWAAPDAELSKAGIALGRTYPKPLVDHGHAR 461

Query: 468 HHTLNQYYAAKKQS 481
              L  Y   + +S
Sbjct: 462 ARALAAYEQIRNES 475


>gi|88705106|ref|ZP_01102818.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
 gi|88700801|gb|EAQ97908.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
          Length = 482

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 166/482 (34%), Positives = 258/482 (53%), Gaps = 34/482 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67
           ++W R DLR+ D  AL AA  +   +V+ ++I    +P  W   G S     +++ SL  
Sbjct: 6   ILWFRQDLRLNDLPALQAASRDG-RRVLPLYIFDEDSPGDWVMGGAS---RWWLHHSLSA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + +  +G    + +      S E L   C     T ++ +R+YE      +K+L + L
Sbjct: 62  LARDIEDQGGKLIFRRGK----SREVLGDICKSTDATAVYCSRRYEPWASEEEKMLHEDL 117

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +  I  K +  ++L  PG+++  +   YKV+TPF +A ++ L +A+   +PVP +  + 
Sbjct: 118 GNSDIDFKRYGGTLLHEPGNVMTQSGGPYKVFTPFWRACLE-LDRAE--PVPVPDVTWS- 173

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRDIPA 238
             T +      D+  +   P +          GE  A   L  F +E V  Y ++RD PA
Sbjct: 174 --TFTKSDALDDWQLRPTSPNWAASWEEYWTPGEDGAQQRLHDFLEESVSRYADERDFPA 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            + +S+LSP+L  G LSPRQ W   +++ ++     K+    +  E+ WREF  HL+ F+
Sbjct: 232 EEVSSRLSPHLHHGELSPRQVWAMCEQKKLETPASEKA-IKKFQAEIGWREFSYHLLHFF 290

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +   K F        W  D   L+ W+QG TG+PI+DA MR+L   G MHNR+RM+ A
Sbjct: 291 PEIPE-KAFKENFADFPWQPDKTRLERWQQGQTGYPIVDAGMRELWATGTMHNRIRMVVA 349

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL  WR GE++F   L+D D+ASN   WQW A +G D+ PYFRIFNP  QG++F
Sbjct: 350 SFLCKHLLQHWRSGEDWFWDTLVDADMASNGCSWQWVAGSGADAAPYFRIFNPITQGEKF 409

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSL--NYPLPIVDHKKACHHTLN 472
           D  G ++R W+PE+  +P +Y+H P       L++  + L  +YP PIVDHK+A    L+
Sbjct: 410 DKHGDYVRQWVPEIARLPNKYLHKPWEASKEALEEAGIKLGSDYPEPIVDHKEARQAALD 469

Query: 473 QY 474
            Y
Sbjct: 470 AY 471


>gi|311748125|ref|ZP_07721910.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
 gi|126576610|gb|EAZ80858.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
          Length = 432

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 163/472 (34%), Positives = 241/472 (51%), Gaps = 47/472 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACH-NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            + + W R DLR+ DN  LY A    +D   + +F  T     +    AR S FI+  + 
Sbjct: 3   KLSVFWFRRDLRLEDNTGLYYALQQETDVLPLFIFDRTILDDLEDKTDARVS-FIHDQIQ 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++ L +KG        +  +   E +  + +Q     ++ NR YE    +RD+ +EK 
Sbjct: 62  NLKEELEKKGSTLLVKYGTPEEVYQELIKKFEIQA----IYTNRDYEPYAKKRDRAIEKL 117

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            + + I   +F D V+  PG ILN + + YKV+TPF +  +    + ++ +L     +  
Sbjct: 118 AEEKGISFLTFKDQVIFEPGEILNGSGEFYKVFTPFSRVWLSKFEETNIEALSYFHWKNL 177

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               P  +    +  F+           +         +E + YY + R+ PA  GTS+L
Sbjct: 178 YQTKPEPLISLKEMGFE---------RSSISIPSSNPNEEIIKYYDKTRNFPAENGTSRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
             +L  G +S RQ           L +K  S   ++LNELIWREFY  ++ + P V + K
Sbjct: 229 GIHLRFGTISIRQ-----------LALKAASLNETYLNELIWREFYMMILDYNPQV-VDK 276

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P  ++I W  +    +AW +G TG+PI+DA MR+LN  G+MHNR+RMI ASFL K L
Sbjct: 277 AFKPAYDQIPWRNNEEEFKAWCEGKTGYPIVDAGMRELNQTGYMHNRVRMIVASFLTKHL 336

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +LLD DLA+NNGGWQWAA TG D+ PYFR+FNP+ Q ++FD    +I
Sbjct: 337 LIDWRWGEAYFAKKLLDFDLAANNGGWQWAAGTGTDAQPYFRVFNPSSQTEKFDKDLKYI 396

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + W+PE                     +  YP PIVDHK A    L+ Y  A
Sbjct: 397 KKWIPEFG-------------------TEKYPKPIVDHKFARQRALDTYKKA 429


>gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
           IMS101]
 gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
           IMS101]
          Length = 474

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 166/466 (35%), Positives = 241/466 (51%), Gaps = 22/466 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L  A       V+ +F       ++  I++ +  ++   L  +QK
Sbjct: 6   LFWHRRDLRISDNVGLTQASQEGQT-VVGIFCLDENILKRDDIASARVTYMIGCLQHLQK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G              IE +           +++N   E    +RD+ +++ L+  
Sbjct: 65  RYKQIGSQLLIMS----GKPIEAIPKLATFLEAKAVYWNLDVEPYSRKRDRQVKENLEAA 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-----RKALIQNLVQADLRSLPVPAIRL 184
            I  K+F + +L  P  I     + Y VYTPF      K     L    L+ L    ++ 
Sbjct: 121 NIQVKTFWEQLLHSPEEIFTSTKKPYSVYTPFWKNWQGKKKSNPLNTPVLKGLTEDQLQY 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           T  +   ++P      F   + +    GE  AL  L KF    +  Y EQR+ P++ GTS
Sbjct: 181 TKKIGVIDLPTAKQLGFNWDNKLILEPGETAALEKLEKFSNGAISSYQEQRNFPSLDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF----SWLNELIWREFYRHLMAFYP 299
           QLS  L  G +  R  W + +E   +      S  F    +W  E+ WREFY+++M  YP
Sbjct: 241 QLSVALKFGTIGIRTVWAKTQELIENCY---SSEVFENIETWQKEIAWREFYQYVMYHYP 297

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +  G P+    +   W  +    QAW +G TG+PI+DAAMRQLN  GWMHNR RMI AS
Sbjct: 298 ELETG-PYREHWKNFPWKNNKAHFQAWCEGNTGYPIVDAAMRQLNETGWMHNRCRMIVAS 356

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDL+++W+ GE+YFM  L+DGDL +NNGGWQW+AS+G D  P  RIFNP  Q +++D
Sbjct: 357 FLTKDLIINWQWGEKYFMQNLIDGDLCANNGGWQWSASSGMDPKP-LRIFNPVSQTQKYD 415

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           P+G +IR W+ EL +V TQY+       ++ + ++ YPLPIVDHKK
Sbjct: 416 PEGEYIRQWVCELRSVDTQYLVTGKIPAEERE-AIGYPLPIVDHKK 460


>gi|302383034|ref|YP_003818857.1| deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193662|gb|ADL01234.1| Deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
           15264]
          Length = 490

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 175/487 (35%), Positives = 242/487 (49%), Gaps = 49/487 (10%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-- 59
           KA    +  ++W R DLR+ DN AL  A H +   V+ V+I         G + R +   
Sbjct: 4   KAQDGPAPVILWFRRDLRLADNPALNKA-HATGRPVVPVYI------HDEGTAVRPAGAA 56

Query: 60  ---FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
              ++  SL  +  SL+++G      +     DS   L     Q     +F NR +E   
Sbjct: 57  SLWWLDKSLRALAGSLAERGATLILRRG----DSETELRRLIDQTGADTVFLNRLFEPEA 112

Query: 117 VRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
             RD  +   L+   V C+  + S+L  PGS+LN +   YKV+TPF KAL         R
Sbjct: 113 WTRDADIAHGLKTDGVECRGSNGSLLALPGSLLNGSGGPYKVFTPFMKAL---------R 163

Query: 176 SLPVPAIRLTGPVTPSNIPRFF--DYPFQAIDPMFP---------IGEQNALHILRKFCK 224
           +   P    TGP      P     D     + P  P          GE  A   L +F  
Sbjct: 164 AQAEPPAHTTGPRQLGAAPGLESDDLDAWGLHPTRPDWSKGFDWTPGEDGATAALHRFVS 223

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
             +  Y   RD PA   TS+LSP+L  G +SP + W   ++   D        A  ++ E
Sbjct: 224 GGLADYSNGRDRPAEPATSRLSPHLHFGEISPWRAWIAARDA-ADGGKVTSGEADKFIAE 282

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           LIWR+F  HL+  +P++   K F P  + + W  D     AW +G TG+PI+DA MR+L 
Sbjct: 283 LIWRDFSAHLLHHFPTLP-DKAFRPEYDAMPWRDDEPGFLAWTRGMTGYPIVDAGMRELW 341

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G MHNR+RMI ASFL+KDLL+DWR GE +F   L+D DLASN+  WQW A +G D+ P
Sbjct: 342 ATGVMHNRVRMIVASFLIKDLLIDWRRGEAWFWDTLVDADLASNSQNWQWVAGSGADASP 401

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNY 456
           YFRIFNP  QG++FD +  +++ W+PEL  VP ++IHAP  W    +        L   Y
Sbjct: 402 YFRIFNPVTQGQKFDAEARYVKRWIPELAPVPARWIHAP--WNAPPEILRDCGIRLGTTY 459

Query: 457 PLPIVDH 463
           P PIVDH
Sbjct: 460 PRPIVDH 466


>gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
 gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae
           NSW150]
 gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
 gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella
           longbeachae NSW150]
          Length = 472

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 172/486 (35%), Positives = 261/486 (53%), Gaps = 25/486 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVW R DLR+ DN A   AC +    VI ++I      +   +   Q+ ++Y SL 
Sbjct: 1   MTTALVWFRFDLRLNDNPAFIEACSHHQF-VIPLYIYDE---KNSVLGGAQAWWLYHSLT 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL+Q+G+     +     D +E +        ++ +++NR YE   + RDK ++  
Sbjct: 57  SLSNSLAQRGLNLILRK----GDPLEIILDLAKTVSISSVYWNRCYEPVAISRDKGIKAT 112

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADLRSLPVPAI 182
           L  R I   S + S+L  P +I N +   +KV+TP+ K    LI      +L   PV   
Sbjct: 113 LLERGIDVHSSNGSLLHEPWTIRNKSGDYFKVFTPYWKHCKQLINIQRPMNLEHRPVGVE 172

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             +  +    +    ++  +  +   P GE  A   L++F +  +  Y   RD P    T
Sbjct: 173 VQSELLNDWKLLPTINWAARFSEYWIP-GEGGAQQKLKEFIEHHLNGYKNNRDFPIKNAT 231

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPK---SGAFSWLNELIWREFYRHLMAFY 298
           S+LSP+L  G +SP   W  L+   ++L  + P    + A  +L+EL WREF  +L+  +
Sbjct: 232 SRLSPHLHFGEISP---WTILRA--IELAKLNPNCDLASAEHFLSELGWREFSVYLLYHF 286

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +   + F    +   W+ D  LL  W++G TG+PIIDA MR+L   G+MHNR+RMI A
Sbjct: 287 PKLP-SENFRNEFDAFPWHNDEKLLSYWRRGLTGYPIIDAGMRELWATGYMHNRVRMIAA 345

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR+G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP +Q ++F
Sbjct: 346 SFLTKGLLIDWRLGADWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKF 405

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476
           D  G++IRHW+PEL+ + +Q IHAP   +      LN  YP PI+DH +A    LN Y  
Sbjct: 406 DADGSYIRHWVPELSQLDSQSIHAPWESVGSERFYLNTKYPKPIIDHHEARTRALNYYNQ 465

Query: 477 AKKQSL 482
            K+  L
Sbjct: 466 LKRNDL 471


>gi|75763261|ref|ZP_00743014.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489251|gb|EAO52714.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 478

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 262/485 (54%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I    Q     I +    +++ +++ VQK
Sbjct: 8   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QDETFSIGSAAKWWLHHAIIDVQK 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G  F        ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 62  QLKALGSTFIIRNGKTQEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 117

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 118 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISK--VQSIKWGSSLP 175

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + I+ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 176 ASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSM 235

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP 
Sbjct: 236 LAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 291

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 292 FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASF 351

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 352 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 411

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 412 NGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIELGNTYPLPVVDHKAARERALCAY 471

Query: 475 YAAKK 479
            + K+
Sbjct: 472 KSMKE 476


>gi|299747808|ref|XP_002911220.1| photolyase [Coprinopsis cinerea okayama7#130]
 gi|298407687|gb|EFI27726.1| photolyase [Coprinopsis cinerea okayama7#130]
          Length = 633

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 174/495 (35%), Positives = 258/495 (52%), Gaps = 77/495 (15%)

Query: 11  LVWLR-NDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + W+R  DLR+ DN+AL  A   + +    ++A+F+ +P+ +  H  S+R+  F   +L+
Sbjct: 71  VFWMRMTDLRVKDNRALARASQQAASDGVPLVALFVVSPQDFVAHDRSSRKIDFTLRNLV 130

Query: 67  QVQKSLSQKGIVFQY----HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            ++  L++  I         + +   + I +LDS         +F N +YE++E+RRD  
Sbjct: 131 SIKCRLAELHIPLHVATLPRRKTVVSEVIIFLDSIGCNH----VFANIEYEVDELRRD-- 184

Query: 123 LEKRLQHRVICKS---FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-- 177
           +E   + R I K    + +  ++ PG I +   + Y VY+P+ +  + ++V + L     
Sbjct: 185 IELCSKAREISKQVSLYHNKSVVEPGIIQSKGGKGYAVYSPYARQWV-SIVNSHLSDYLE 243

Query: 178 ----PVP---AIRLT---GPVTPSNIPRFFD-YPFQAIDPMF-----PIGEQNALHILRK 221
               P P   A+R     GP+  S IP + + +     D M      P GE  A  IL++
Sbjct: 244 EAQDPAPNGAAVRSCPKIGPLFLSEIPSYVEGFVLDPEDSMIMRELWPEGEDAASQILQR 303

Query: 222 FCKEK------------------------VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
           F + K                        +  Y   RD      TS+LSPYLS GV+S R
Sbjct: 304 FLQTKARASQLEARGPLNEGVTYDVKHNRISKYHTDRDRADKDTTSRLSPYLSSGVISIR 363

Query: 258 QCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
           +    + +      L    K+GA  +++EL WR+FY  ++A YP + MG+PF+     I 
Sbjct: 364 EVLRAILKVTGAQQLNTDSKTGAGRFISELAWRDFYTDVLASYPRISMGRPFLEKYSGII 423

Query: 316 WNK---------------DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           W                 D+  L  WK+G TG PI+DAAMR LN +GW+HNR+RMI A +
Sbjct: 424 WENHQAPANSKDPAGTEMDAEALFRWKRGTTGVPIVDAAMRCLNKMGWVHNRMRMIVAMY 483

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L++DWR+GE YFM  L+DGDLASNNGGWQW+ASTG D  PYFRIFNP  Q  + DP
Sbjct: 484 LTKHLMIDWRVGERYFMQTLVDGDLASNNGGWQWSASTGVDPCPYFRIFNPHTQSLKADP 543

Query: 421 QGTFIRHWLPELNNV 435
            G FIRHW+PEL N+
Sbjct: 544 TGDFIRHWVPELRNL 558


>gi|323127700|gb|ADX24997.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 474

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 175/497 (35%), Positives = 257/497 (51%), Gaps = 52/497 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLR+ D KAL  A   S +  + VF    EQ  Q    +R    + AS+L  
Sbjct: 2   VSVMWFRRDLRVEDQKALARAI-ASQSPTLCVFQFNQEQLSQP--PSRNQSAVVASVLAF 58

Query: 69  QKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           ++ L +KGI   V      + F+   + LD +      T +++N        RRD+   +
Sbjct: 59  KEELKEKGIDLYVMHGDLITCFEQLAQQLDQW------TDVYFNYDESGFGRRRDQQAAQ 112

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKA---------LIQNLVQADLR 175
             + + I   ++ D  L     I N + Q YK++TP+ +          ++ +L + +  
Sbjct: 113 WFRAKKINIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLPKETPVVVDLSRGNWL 172

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           SL +P   L        I    D  F  +     +  + A   L  F   ++  Y   RD
Sbjct: 173 SLKIPQATL------ELIETLKDTTFNDV-----MTVKEAKERLNHFVDNQLADYDTTRD 221

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P+  GTS LSPYL +G++S R  +  + +          SG   +L EL WR+FY  + 
Sbjct: 222 FPSRCGTSFLSPYLRLGMVSIRTVYQAVSQ------APASSGQAVFLKELAWRDFYHMVY 275

Query: 296 AFYPS---VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
              P+   + + + F      +EW+++    +AWK+G TG+PIIDAAM+QL   GWMHNR
Sbjct: 276 VANPNQKKLAIQEAF----RHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNR 331

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+ ASFL KDL +DWR+GE YF  QL+D D ASN GGWQWAAS G D+VPYFRIFNP 
Sbjct: 332 LRMVVASFLTKDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPV 391

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------NYPLPIVDHKKA 466
            QGKRFDP G FIR +LP L +VP  Y++ P    +    S+      +YP P+VDH + 
Sbjct: 392 TQGKRFDPDGEFIRSYLPSLVSVPQTYLYEPWKMPEALQESIACIIGEDYPHPLVDHAEQ 451

Query: 467 CHHTLNQYYAAKKQSLL 483
               + +Y  AK+++ +
Sbjct: 452 RKRAIARYEWAKEKAQM 468


>gi|255037995|ref|YP_003088616.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
           18053]
 gi|254950751|gb|ACT95451.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
           18053]
          Length = 442

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 167/483 (34%), Positives = 255/483 (52%), Gaps = 53/483 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--QHGISARQS 58
           M   T   + + W R DLR+ DN  LY A   S   V+ +FI         +    AR +
Sbjct: 1   MGLKTKDKIAIFWFRRDLRLHDNAGLYYALR-SGYPVVPLFIFDRNILDDLEEKTDARLT 59

Query: 59  HFIYASLLQVQKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
            FI+ ++ +++++L QK   I+ +Y     F + I W ++      + +++ N  YE   
Sbjct: 60  -FIHKAVSEIRQALRQKEADIMVEY----GFPEKI-W-ENLVAGHDIAEVYTNTDYEPYA 112

Query: 117 VRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
             RDK + + L+ + ++ K+  D V+     IL+     Y V+TP+ +A  Q L    L+
Sbjct: 113 TDRDKAIYRILKQKDIVFKTCKDQVIFEKQEILSGQGSPYTVFTPYSRAWKQKLNDFYLK 172

Query: 176 SLPVPA-IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           S P     R       S +P   +  F+  D  FP  + +   +L+ + KE        R
Sbjct: 173 SYPTKKYFRHFHQWHGSALPSLREMGFEKTDYDFPPADVDDT-LLKNYAKE--------R 223

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D PA++ TS++  +L  G +S R           DL  + ++ + ++LNELIWR+FY+ +
Sbjct: 224 DFPAMEATSRIGVHLRFGTVSIR-----------DLARQARAHSDTFLNELIWRDFYQQI 272

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           ++ +P V  G  F    + I+W  D    + W +G TG+P++DA MRQLN IG+MHNR+R
Sbjct: 273 LSNFPHVGKGDAFRKAYDLIKWRYDKADFKKWCEGKTGYPLVDAGMRQLNAIGFMHNRVR 332

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+TASFL K LL+DWR+GE YF  +LLD DLA+NNGGWQWAA +G D+ PYFRIFNP  Q
Sbjct: 333 MVTASFLSKHLLIDWRLGEAYFAQKLLDYDLAANNGGWQWAAGSGTDAAPYFRIFNPASQ 392

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            ++FDP+  +I+ W+PE                     +  YP P+VDHK+A    L  Y
Sbjct: 393 AEKFDPKMEYIKKWVPEFG-------------------TDEYPEPMVDHKEARERCLQAY 433

Query: 475 YAA 477
             A
Sbjct: 434 KTA 436


>gi|251782896|ref|YP_002997199.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391526|dbj|BAH81985.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 474

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 175/497 (35%), Positives = 257/497 (51%), Gaps = 52/497 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLR+ D KAL  A   S +  + VF    EQ  Q    +R    + AS+L  
Sbjct: 2   VSVMWFRRDLRVEDQKALARAI-ASQSPTLCVFQFNQEQLSQP--PSRNQSAVVASVLAF 58

Query: 69  QKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           ++ L +KGI   V      + F+   + LD +      T +++N        RRD+   +
Sbjct: 59  KEELKEKGIDLYVMHGDLITCFEQLAQQLDQW------TDVYFNYDESGFGRRRDQQAAQ 112

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKA---------LIQNLVQADLR 175
             + + I   ++ D  L     I N + Q YK++TP+ +          ++ +L + +  
Sbjct: 113 WFRAKKINIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLPKETPVVVDLSRGNWL 172

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           SL +P   L        I    D  F  +     +  + A   L  F   ++  Y   RD
Sbjct: 173 SLKIPQATL------ELIETLKDTTFNDV-----MTVKEAKERLNHFVDNQLADYDTTRD 221

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P+  GTS LSPYL +G++S R  +  + +          SG   +L EL WR+FY  + 
Sbjct: 222 FPSRCGTSFLSPYLRLGMVSIRTVYQAVSQ------APASSGQAVFLKELAWRDFYHMVY 275

Query: 296 AFYPS---VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
              P+   + + + F      +EW+++    +AWK+G TG+PIIDAAM+QL   GWMHNR
Sbjct: 276 VANPNQKKLAIQEAF----RHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNR 331

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+ ASFL KDL +DWR+GE YF  QL+D D ASN GGWQWAAS G D+VPYFRIFNP 
Sbjct: 332 LRMVVASFLTKDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPV 391

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------NYPLPIVDHKKA 466
            QGKRFDP G FIR +LP L +VP  Y++ P    +    S+      +YP P+VDH + 
Sbjct: 392 TQGKRFDPDGEFIRSYLPSLVSVPQTYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQ 451

Query: 467 CHHTLNQYYAAKKQSLL 483
               + +Y  AK+++ +
Sbjct: 452 RKRAIARYEWAKEKAQM 468


>gi|171779964|ref|ZP_02920868.1| hypothetical protein STRINF_01751 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281312|gb|EDT46747.1| hypothetical protein STRINF_01751 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 471

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 177/486 (36%), Positives = 248/486 (51%), Gaps = 35/486 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M   ++W+RND R  DN AL  A ++   +  +I ++   PE  +   I      + ++S
Sbjct: 1   MGNSVLWIRNDFRFHDNTALINAINDIKDNENLIFIYHLDPEIIK---IETTSYAYFFSS 57

Query: 65  LLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRRDK 121
           L    +S  +KG  I F Y +     D++  L+ +     + K++YN  +    + +  K
Sbjct: 58  LNSYYESCLKKGLDIYFLYGEILTCFDTL--LNEFS---NIDKIYYNTIECGYGKSQEQK 112

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-------RKALIQNLVQADL 174
           L     +  V   SF D  L     +L      YKV+T +       +K   QN+  A L
Sbjct: 113 LNRFLKRKNVEVFSFYDHHLHSANKVLKEDNSHYKVFTHYYNKWMSSKKPEEQNIDYAKL 172

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
             + +       P+         +        MF  GE+ A   L  F   K+  Y E R
Sbjct: 173 SEIILSDFSKKDPIGKEKFIELRNLLNNDF-SMFT-GEEKARECLADFMNAKLCSYNENR 230

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           + P + GTS LS YL+ G LS R+ +N         ++    G   ++ EL WR+FY  +
Sbjct: 231 EYPFLDGTSHLSHYLTTGQLSVREVFN------AATMMPFSLGQEIFIKELAWRDFYNMI 284

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             F+P+    +  I     I W  D      WK G TGFPIIDAAMRQL   GWMHNRLR
Sbjct: 285 YYFHPNQ-HNEEIIEKYRYINWEYDEENFIKWKSGLTGFPIIDAAMRQLREEGWMHNRLR 343

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MITASFL+KDLL+DWR+GE+YF   L+D D ASN GGWQWAAS G D+VPYFRIFNP  Q
Sbjct: 344 MITASFLIKDLLIDWRLGEKYFSEMLIDYDTASNIGGWQWAASVGTDAVPYFRIFNPITQ 403

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW---LDKN---DLSLNYPLPIVDHKKACH 468
            K++DP+G FI+ ++ EL ++PTQYIH P  +   L++N   D+   Y  PIVDHK    
Sbjct: 404 SKKYDPEGKFIKRYVKELEDIPTQYIHEPFKFKKQLEENYGIDIKKLYVSPIVDHKTQRQ 463

Query: 469 HTLNQY 474
             L  +
Sbjct: 464 KALEMF 469


>gi|262277239|ref|ZP_06055032.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
 gi|262224342|gb|EEY74801.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
          Length = 470

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 171/498 (34%), Positives = 264/498 (53%), Gaps = 53/498 (10%)

Query: 7   MSVHLV-WLRNDLRITDNKAL--YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M + L+ WLRND R+ DN+AL    +  N+D     VF +  ++  ++   + Q  ++Y 
Sbjct: 1   MKIMLIYWLRNDFRLNDNEALSYLLSSENNDF----VFFSYDKE--KYKFRSAQKWWLYK 54

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD--- 120
           +L    K LS+ G+ F        D    +L+     +++T++ +N+ +   E+  +   
Sbjct: 55  TLKIFDKKLSEIGVKFIVEN----DLEYSFLEKIIKNKKITEVCWNKIFSPEEIAIENNI 110

Query: 121 -KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK----------ALIQNL 169
            KLLEK   + +  K F  ++L  P          ++V+TPF K             +NL
Sbjct: 111 IKLLEK---NNIKYKIFSSNLLQNPDQCRKKDNTPFQVFTPFWKNAEMIYLKNYKYKKNL 167

Query: 170 VQADLRSLPVPAIRLTGPVTPSN--IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
           +++  +SL          + P      +F  Y        FP GE  AL  ++ F  EK+
Sbjct: 168 IKSK-KSLKNNNQSKIETILPKKKWYEKFEKY-------WFP-GEDIALKKIKSFNSEKI 218

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            +Y + RD P+I+GTS+LSP+L+ G +SP++ ++   +     +   K G   +LNE+ W
Sbjct: 219 NFYDKNRDFPSIEGTSKLSPHLAFGEISPKKIYDECTK-----IKNKKIGVTKFLNEIGW 273

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF  HL+  +P + + K      +K  W+++   L  WK+G TG+PI+DAAM+QL   G
Sbjct: 274 REFAYHLINHFP-IMLKKNLRKNFDKFPWSENKKFLDKWKKGNTGYPIVDAAMKQLYETG 332

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNRLRM+  SFLVK L ++W  GE+YF   LLD D A+N  GWQW A  G D+ PYFR
Sbjct: 333 WMHNRLRMVVGSFLVKHLRINWTEGEKYFKDTLLDYDTANNVSGWQWIAGCGADAAPYFR 392

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL------PIV 461
           IFNP  QG++FDP G F+++W+P L  VP ++IH P    ++    +N+ L      PIV
Sbjct: 393 IFNPITQGEKFDPNGEFVKYWIPNLKKVPKKFIHKPWELPEEQAKLINFNLIKDYFEPIV 452

Query: 462 DHKKACHHTLNQYYAAKK 479
           DHK A    L  +   KK
Sbjct: 453 DHKIAREAALKAFEFTKK 470


>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
 gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
          Length = 477

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 251/483 (51%), Gaps = 28/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+TD   L AA       V+ VFI  P    +  +      +++ SL  +Q 
Sbjct: 6   IFWFRQDLRLTDLPGLCAAAER--GAVLPVFIHDPSLGNEWSLGGASQWWLHYSLKSLQA 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S+  +G      + +  D     L +   +   + ++ +RQY+      +  L + L   
Sbjct: 64  SIEARGGELILRRGAPEDV----LTALIEESGASAVYSSRQYQPWATSLETTLHETLTDE 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP----AIRLT 185
            I  K +  ++L  PGS+L      YKV+TPF +A +Q+    + RS+P       +R  
Sbjct: 120 GIDYKRYAGTLLFEPGSVLTGGGTPYKVFTPFWRACLQSEAPREPRSIPDVEWHVGVRSE 179

Query: 186 G----PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                 + PSN P + D      + ++  GE+ A   L  F    V +Y + RDIPA   
Sbjct: 180 SVEDWNLRPSN-PNWAD----GWESLWSPGEEGATRRLDDFLAGTVKHYGDGRDIPAEAY 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G +SPRQ W+   +     L +       +L+E+ WREF   L+  +P +
Sbjct: 235 TSRLSPHLKFGEISPRQIWH-AAQYAKQRLPEAAESIDKFLSEIGWREFCYTLLDQFPEM 293

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              KPF    +   W      L+AW++G TG+PI+DA MR+L   G+MHNR+RMIT SFL
Sbjct: 294 P-NKPFKAQFDHFPWAGTQKALKAWQKGLTGYPIVDAGMRELWQTGFMHNRVRMITGSFL 352

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL  WR GE +F   L+D D+ASN   WQW A +G D+ PYFRIFNP  QG++FD  
Sbjct: 353 TKHLLTHWRAGELWFWDCLVDADIASNACSWQWVAGSGADASPYFRIFNPIAQGEKFDKA 412

Query: 422 GTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475
           G ++R ++PE+ N+P +YIH    AP S L+++ + L   YP PIVDHK A    L  Y 
Sbjct: 413 GEYVRRYVPEIANLPDKYIHKPWEAPASILEQSGIVLGDTYPEPIVDHKSARQSALAAYE 472

Query: 476 AAK 478
             K
Sbjct: 473 EVK 475


>gi|322369279|ref|ZP_08043844.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
           DX253]
 gi|320551011|gb|EFW92660.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
           DX253]
          Length = 464

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 170/485 (35%), Positives = 255/485 (52%), Gaps = 37/485 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +H+ W R DLR+ DN+AL     +  + V+ VF+        H    R S F+ ++L  +
Sbjct: 1   MHVHWHRRDLRVADNRAL-----SRGSPVLPVFVFDGAVL-SHAAPPRVS-FMLSALESL 53

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++S  ++G      +     D  E +          ++ +NR Y      RD  +   L 
Sbjct: 54  RESYRERGGDLLVLRG----DPREEIPRIAAAADADRVVWNRDYSGLAKERDADVRDALS 109

Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIRL 184
              I + +F D++L  PGSI  +    Y VYT F K        A   +   + VP   +
Sbjct: 110 DAGIERRAFHDALLHTPGSITTNQGDYYSVYTYFWKKWRDGAKDAPFDAPDEIVVPDEVV 169

Query: 185 TGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              +    IP   D  F+  DP   + P G + A  +L  FC++ VY Y + RD PA + 
Sbjct: 170 EEGI---EIPTLADLGFE--DPEAEIPPAGTEAARDLLSAFCEDDVYRYDKARDYPARES 224

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHLMAFY 298
           TS+LSP+L  G +  R+ W     E      + +  A S   +  +L WREFY H++   
Sbjct: 225 TSRLSPHLKFGTVGIREVWE--ATERAKDAAESEDAAESVEEFQGQLAWREFYAHVLDDT 282

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PSV + + +  +   I W  D   ++AWK G TG+PI+DA MRQL    W+HNR+RMI A
Sbjct: 283 PSVVV-ENYKDYQYDIAWRDDPDGVRAWKDGETGYPIVDAGMRQLREEAWVHNRVRMIIA 341

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDLLVDWR G +++  +L+D D A++NGGWQWAASTG D+ PYFR+FNPT QG+RF
Sbjct: 342 SFLTKDLLVDWREGYDWYRRKLVDHDTANDNGGWQWAASTGTDAQPYFRVFNPTTQGERF 401

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL-----DKNDLSLNYPLPIVDHKKACHHTLNQ 473
           DP   +I+ ++PEL +VP + +   H W      ++ +L+ +YP PIVDH +     +  
Sbjct: 402 DPDAEYIKRFVPELADVPPKTV---HEWTELDPDERRELAPDYPDPIVDHSERREMAITM 458

Query: 474 YYAAK 478
           +  A+
Sbjct: 459 FENAR 463


>gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1]
 gi|300073971|gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 175/498 (35%), Positives = 253/498 (50%), Gaps = 42/498 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE---QWRQHGISA-RQSHFIYASLL 66
           LVW R DLR+TD+ ALY A   S  +V  VF+   +     +  G++  R+  F+ AS+ 
Sbjct: 8   LVWFRRDLRMTDHAALYYALSQSR-QVWCVFVFDTDILAALKAEGVTQDRRIDFLLASVA 66

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++ ++L   G        S    ++  + +   +  V  ++ N  YE   V RD  + + 
Sbjct: 67  ELDEALRHAGGGLIVLHGS----AVTQIPALAAELDVQAVYANTDYEPAAVERDAAVAQT 122

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------------ 173
           L +      S+ D V+     +L  + + + V+TP++ A +  L  AD            
Sbjct: 123 LAKSGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMSKLAAADGDFFLKPYPVEK 182

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
            L +L  P  +  G   PS+    F  P    +   P G   A  +L +F  +++  Y  
Sbjct: 183 YLTALASPPGK-AGHALPSHRQLGF-APSNLQELKIPTGMSGAQSLLDEFL-DRIGSYGA 239

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD PA++G S LS +L  G +S R       +          +    WL+EL WR+FY 
Sbjct: 240 ARDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQGAAGAAV--WLSELTWRDFYF 297

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            ++  +P V     F P  + I+W +      L  AW +G TG+P++DAAM Q+N  G+M
Sbjct: 298 MILHHHPRVTR-HAFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYM 356

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRM+ ASFL KDL +DWR GE YF   L D DLA+NNGGWQWA+S+G D+ PYFRIF
Sbjct: 357 HNRLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIF 416

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIV 461
           NP  Q ++FDP G FIR +LP+L  +  + IHAP  W    D        L  NYP PIV
Sbjct: 417 NPVTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAP--WTATPDERMDAGVVLGQNYPRPIV 474

Query: 462 DHKKACHHTLNQYYAAKK 479
           DH +A   TL +Y   KK
Sbjct: 475 DHAQARERTLARYAVVKK 492


>gi|47564301|ref|ZP_00235346.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
 gi|47558453|gb|EAL16776.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
          Length = 476

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 261/491 (53%), Gaps = 44/491 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++  + D R+ DN AL+ A  + +  V+ V++    Q     I +    +++ +++ VQK
Sbjct: 6   IMMFQKDFRLYDNPALFEAAQSGE--VVPVYV----QDETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G  F   +    ++ +  ++    Q  +T +++N  YE + ++ ++ ++  L+ +
Sbjct: 60  QLKALGATFIIRKGKTQEEILSLIE----QLDITAVYWNICYEPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  +       +++P P  ++     
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQK-------QAIPKPTSKVQSIKW 168

Query: 190 PSNIPRFFDYPFQAIDPMFP----------IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            S++P         + P  P            E+ A    +KF   K+ +Y E RD P  
Sbjct: 169 GSSLPASLSVSELHLLPTIPWTSHMESIWNPTEEGAYKTFKKFFSSKLTFYSEGRDFPNQ 228

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----SWLNELIWREFYRHL 294
              S L+PYLS G +S +  ++ L    ++   + +S  F     S++ +LIWREF  +L
Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYL----INKSTERQSSLFEKQVNSFIRQLIWREFSYYL 284

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  YP   + KP     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR R
Sbjct: 285 LYHYP-FTVYKPLNKNFEHFPWDKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRAR 343

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M  ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  Q
Sbjct: 344 MAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQ 403

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACH 468
           G++FD  G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A  
Sbjct: 404 GEKFDKDGEYIRKWVPELRDIPNKYIHKPWEAPEPILQKANIQLGDTYPLPVVDHKAARE 463

Query: 469 HTLNQYYAAKK 479
             L  Y + K+
Sbjct: 464 RALCAYKSMKE 474


>gi|114570041|ref|YP_756721.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
 gi|114340503|gb|ABI65783.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
          Length = 499

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 171/490 (34%), Positives = 245/490 (50%), Gaps = 35/490 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR+ DN AL+AA   S   ++  FI  P+   Q         +++ SL  + +
Sbjct: 11  LVWFRRDLRLHDNPALWAAVR-SGRPLVCAFIDDPDAVAQLAPGRASRWWLHHSLAALSR 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S+ Q+G      +     D+   L   C +   +++F+NR         D  L  RL  R
Sbjct: 70  SIRQRGGQLVLRRG----DTTSELVRLCGETGSSEVFWNRGDNPTRDSGDTALAARLADR 125

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V  + F    L  P + LN + + Y+V+TPF KA ++        +LP P       VT
Sbjct: 126 GVKARGFASGTLFNPATHLNGSGKPYRVFTPFWKACLR--APEPSAALPAPDRLPGAAVT 183

Query: 190 PSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            S+    +    QA D        +  GE  AL+ L  F   ++  Y + RD P   GTS
Sbjct: 184 ASDNLEDWSLRPQAPDWASGFSQDWEPGEDGALNRLEAFLANELADYPQSRDRPDEDGTS 243

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF----SWLNELIWREFYRHLMAFYP 299
           +LSP+L+ G +SPR  W+ +++         + G+F     +L+EL WR+F  +L   + 
Sbjct: 244 RLSPHLAWGEISPRTIWHTVRDH------AERGGSFQGGEKFLSELGWRDFAIYLAHHFG 297

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+   + F    +   W  +   L AWK+G TG PI+DA MRQL T GWMHNR+RMITAS
Sbjct: 298 SL-RDENFNRQFDHFPWRSNPAGLDAWKRGQTGIPIVDAGMRQLWTTGWMHNRVRMITAS 356

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL+K L V WR G  +F   L+D DL  N   WQW A +G D+ PYFRIFNP  QG+RFD
Sbjct: 357 FLIKHLGVHWRDGMAWFEDTLVDADLNVNAASWQWVAGSGADAAPYFRIFNPVTQGERFD 416

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTL 471
           PQG ++  W+PEL  +  + +HAP  W    +        L   YP P+ D K      L
Sbjct: 417 PQGLYVHRWVPELTGLSGKAVHAP--WTRPANELIAAGISLGQTYPAPVTDLKTGREQAL 474

Query: 472 NQYYAAKKQS 481
           + Y   K ++
Sbjct: 475 DAYQTMKARA 484


>gi|328725336|ref|XP_003248433.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon
           pisum]
          Length = 187

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 118/184 (64%), Positives = 143/184 (77%)

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           M  +P++C  +PF+ WT  ++W ++   L+AW+QG TG+PI+DAAMRQLNT+GWMHNRLR
Sbjct: 1   MVAFPALCKHQPFVDWTRNVDWQQNEAHLKAWQQGKTGYPIVDAAMRQLNTLGWMHNRLR 60

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MITASFLVKDLL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q
Sbjct: 61  MITASFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 120

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           G+RFD QG FIR WLPEL  VP   IH P  W  KN+  L+YP PIV+HK A   TL+ +
Sbjct: 121 GERFDKQGAFIREWLPELKEVPDSDIHQPQVWAQKNNKKLDYPAPIVEHKDARKKTLDAF 180

Query: 475 YAAK 478
             A+
Sbjct: 181 ERAR 184


>gi|124265897|ref|YP_001019901.1| deoxyribodipyrimidine photo-lyase type I [Methylibium
           petroleiphilum PM1]
 gi|124258672|gb|ABM93666.1| Deoxyribodipyrimidine photo-lyase type I [Methylibium
           petroleiphilum PM1]
          Length = 497

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 180/507 (35%), Positives = 253/507 (49%), Gaps = 56/507 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           +   LVW R DLR  D+ ALY A   +  +V   F+   E       + R+  FI  SL+
Sbjct: 9   LDAALVWCRRDLRAHDHAALYHALRAAR-RVWVAFVFDTEILDPLPRTDRRVEFIRDSLV 67

Query: 67  QVQKSL---------SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            +   L            G++ ++ +     D I  L +      V  ++ N  YE   V
Sbjct: 68  DLDAQLHTLGRSHGTEGVGLIVRHGRAR---DEIPRLAAAL---HVQAVYANTDYEPAAV 121

Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD  +   L Q  +      D V+     +L  A   Y V+TP++ A ++ L    L++
Sbjct: 122 ARDAQVRGALAQTGIAFHPAKDQVVFDTDEVLTGAGTPYGVFTPYKNAWLKKLEPFYLQA 181

Query: 177 LPVPAIRLTGPVTP------SNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKV 227
            PV   R  G + P      + +P      F+  +        G      +L  F  E++
Sbjct: 182 YPVG--RHAGALAPRPAGEAAGVPTLAAIGFEPTNLAALKLAPGTAGGRALLEDFGDERI 239

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ----CWNRLKEEFVDLLIKPKSGAFSWLN 283
             Y + RD PA++G S LS +L  G LS R+     W+R +            GA  WL+
Sbjct: 240 DRYDQTRDFPAVKGPSYLSVHLRFGTLSIRELARLAWDRARAG--------SRGAEVWLS 291

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAM 340
           ELIWR+FY  ++  +P V   + F P  +KI+W    H   L  AW +G TG+P++DAAM
Sbjct: 292 ELIWRDFYHQVLHHHPQVVE-RSFKPEYDKIKWEHGKHADALFAAWCEGRTGYPLVDAAM 350

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
            Q+N  G+MHNRLRM+ ASFL KDL +DWR GE YF  +L D DLA+NNGGWQWA+S+G 
Sbjct: 351 LQINQTGYMHNRLRMVVASFLCKDLGLDWRRGERYFAEKLNDYDLAANNGGWQWASSSGC 410

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------ 454
           D+ PYFRIFNP  Q ++FD QG FIR +LP+L  +P   +HAP  W D   L L      
Sbjct: 411 DAQPYFRIFNPVSQSQKFDAQGKFIRRYLPQLAALPDAALHAP--W-DAKPLDLVAAGLV 467

Query: 455 ---NYPLPIVDHKKACHHTLNQYYAAK 478
              +YP PIV H+ A   TL +Y   K
Sbjct: 468 LGRDYPEPIVRHELARERTLARYAVVK 494


>gi|296116904|ref|ZP_06835507.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976544|gb|EFG83319.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 513

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 165/471 (35%), Positives = 236/471 (50%), Gaps = 32/471 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW RNDLR++DN AL  A   S   V+ +F+  P+  R+H + A    ++   L  +  
Sbjct: 33  IVWFRNDLRLSDNPALSHAV-ASGRPVLCLFVHDPQHAREHALGAAAQWWLDGGLRALHA 91

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ G V     C    D++  +     Q    ++ +NR+Y+      D  ++  L+H 
Sbjct: 92  DLARMGAVLHV-ACG---DALALVPRMAAQAGAAEVVWNRRYDPLGRETDTAIKATLKHA 147

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            VI  SF   VL  P ++   A   ++V+T + +A       A     P+P +   G V 
Sbjct: 148 GVIAHSFAAGVLYEPWTVRTRAGDAFRVFTAWWRA-------ARASGEPLPPLPAPGHVH 200

Query: 190 PSNIPRFFDYPFQAID-----PMFP-----------IGEQNALHILRKFCKEKVYYYVEQ 233
            +  P  ++     ID     P+ P            GE  A   L  F    +  Y + 
Sbjct: 201 AAVSPGAWEGCCVGIDALRLVPVSPDWAGGLREAWQPGEAQARDRLHHFVDGGLGGYADA 260

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFY 291
           RD P +  TS+LSP L  G +SPRQ W+               +     +L+EL WR+F 
Sbjct: 261 RDRPDLPATSRLSPDLRFGHISPRQAWHAAVAAVRGGAAGGMGEQDLEKFLSELGWRDFA 320

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             L+   P +     F    + + W  D+  L AW+QG TG+PI+DA MRQL   GWMHN
Sbjct: 321 VSLLYAQPELVSCN-FRTEFDAMPWRNDARDLCAWQQGRTGYPIVDAGMRQLWRTGWMHN 379

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMI ASFL K LL DWR+GE +F   L+D D+ASN   WQW A  G D+ PYFR+FNP
Sbjct: 380 RVRMIVASFLTKHLLCDWRMGEAWFRDTLVDADIASNVINWQWVAGCGVDAAPYFRVFNP 439

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
            +Q +RFDP GT++R W+PEL  VPT  +HAP +        + YP PIVD
Sbjct: 440 VLQARRFDPDGTYVRRWVPELAGVPTSCVHAPWTCDPAIRARVAYPSPIVD 490


>gi|300710895|ref|YP_003736709.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3]
 gi|299124578|gb|ADJ14917.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3]
          Length = 459

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 162/461 (35%), Positives = 238/461 (51%), Gaps = 26/461 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R DLR+TDN+ L  A  N+    + VF+   E   +H    R + F+  +L  +
Sbjct: 1   MDLCWHRRDLRVTDNRML--AGRNA----LPVFVLD-EAVLEHAAPPRVA-FMLDALESL 52

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++  ++G      +     D    + +   +  V  + +N  Y      RD+ +   L 
Sbjct: 53  REAYRERGGNLLIERG----DPSAVVPTLAAEFGVDTVVWNHDYSGLARERDEAVRAALD 108

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RL 184
            R I  + + D+V+  PGSI       Y V+T F K  +        R  P P      +
Sbjct: 109 ERGINHEQYHDAVIHEPGSITTTDGDPYSVFTYFGKKWLD-------RDKPDPVSAPESV 161

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           + P  P  IP   D  F+A +   P  G   A + L  FC   +  Y E RD P+  GTS
Sbjct: 162 SDPDDPGGIPALSDLGFEAPEGSVPDAGPDAAENRLETFCDGPIRRYEEDRDYPSRGGTS 221

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVC 302
           +LS  L  G +  R+ +   +    +   K + G+   + ++L WREFY  ++ ++P+V 
Sbjct: 222 RLSVDLKFGTVGIRRVYAATENAKAEAGSKEERGSVEEFQSQLAWREFYTQVLYYHPNVV 281

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             K +  +  +IEW  D     AW +G TG+PI+DA MRQL    WMHNR+RM+ A+FL 
Sbjct: 282 T-KNYKTYDGEIEWRTDEEGFDAWTEGKTGYPIVDAGMRQLREESWMHNRVRMLVAAFLT 340

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLLVDWR G ++F   L+D D  ++ GGWQWAASTG D+ PYFRIFNP  QG+R+DP  
Sbjct: 341 KDLLVDWREGYDWFRKHLVDHDTGNDTGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDA 400

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
            +IR ++PEL  V  + IHA H   D+    + YP PIVDH
Sbjct: 401 EYIREYVPELREVDPKTIHAWHDLDDEARPDVGYPAPIVDH 441


>gi|228921829|ref|ZP_04085144.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837834|gb|EEM83160.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 476

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 164/490 (33%), Positives = 256/490 (52%), Gaps = 42/490 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ ++I    Q     I +    +++ +++ ++K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPIYI----QDETFSIGSAAKWWLHHAIIDIKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++       P P  ++     
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPTSKVQSIKW 168

Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239
            S++P         + P  P            E+ A  + +KF   K+ +Y E RD P  
Sbjct: 169 GSSLPASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKKFFSSKLAFYSEGRDFPNQ 228

Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              S L+PYLS G +  +  +    N+  E    L  K      S++ +LIWREF  +L+
Sbjct: 229 NAHSMLAPYLSFGQIPVKLMYHYLINKSTERQCSLFEK---QVISFIRQLIWREFSYYLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP   + KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM
Sbjct: 286 YHYP-FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG
Sbjct: 345 AVASFLVKHLLISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FD  G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A   
Sbjct: 405 EKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARER 464

Query: 470 TLNQYYAAKK 479
            L  Y + K+
Sbjct: 465 ALCAYKSMKE 474


>gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
 gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
          Length = 471

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 262/493 (53%), Gaps = 43/493 (8%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + S+ + W R DLR++DN AL AAC     +VI ++I   +++          +++Y SL
Sbjct: 2   SASIVIHWFRQDLRLSDNPALSAACEA--GEVIPLYILNDKEYGAREFGGATKNWLYYSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + +SL  + ++ +        D    ++S   +     +F+NR YE   V  D  L+ 
Sbjct: 60  KALNESLKGQLLIRR-------GDPAVIINSLIQETGAAGVFWNRCYEPWRVEHDAQLKT 112

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVP--- 180
            L+   +  KSF+ S+L  P  +       YKV+TPF RK  +Q   +   + LPVP   
Sbjct: 113 DLEENGITAKSFNGSLLWEPWQVGKPDGSPYKVFTPFYRKGCLQ--AEEPRKPLPVPDQL 170

Query: 181 ---AIRLTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
               +   G ++   +    D P+ A +   +  GE+ A + L  F ++ +  Y + R+ 
Sbjct: 171 RIHPLNTEGALSIDELNLLEDRPWSAQVSSHWEHGEKAAQNRLYAFFEDGLSDYKDGRNF 230

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           PA+  TS+LSP+L  G +SP Q W  L   EE  D+          + +EL WREF   L
Sbjct: 231 PALTHTSRLSPHLHFGEISPNQIWWVLGSHEETRDI--------DHFRSELGWREFSYSL 282

Query: 295 MAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +   PS+    P     EK +   W  D   L AW++G TG PI+DA MR+L   G+MHN
Sbjct: 283 LFNNPSL----PKSNLNEKFDNFPWLSDDQRLLAWQKGQTGVPIVDAGMRELWQTGYMHN 338

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRMI  SFLVK+LL+DWR+GEE+F   L+D DLA+N+  WQW A  G D+ PYFRIFNP
Sbjct: 339 RLRMIVGSFLVKNLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAPYFRIFNP 398

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSL--NYPLPIVDHKK 465
            +QG++FD  G + R +LPEL ++P +Y+     AP   L    ++L  NYPLPIVD KK
Sbjct: 399 ILQGEKFDAHGDYTRRFLPELKDLPDKYLFKPWEAPKDVLKGAGVTLGENYPLPIVDLKK 458

Query: 466 ACHHTLNQYYAAK 478
           +    L  +   K
Sbjct: 459 SRDEALRAFEEIK 471


>gi|304321394|ref|YP_003855037.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
           HTCC2503]
 gi|303300296|gb|ADM09895.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
           HTCC2503]
          Length = 478

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 252/483 (52%), Gaps = 25/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++WLR DLR  DN A+  A   S A V+ +++          + A Q  +++ SL   ++
Sbjct: 6   ILWLREDLRFDDNPAMREAAA-SGAPVLCLYVLDDATAGDFAMGAAQRWWLHHSLCAFKE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  +G      +        E + +   + + + +F+NR+Y   +   D  ++  LQ  
Sbjct: 65  DLETRGGALILRRGKE----TEIVPALAKEIKASHVFWNRRYMKWQTDPDTEIKSALQDM 120

Query: 131 VICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I   S +  +L  P  I   +   YKVYTP+ K+L Q   +    +LP    +L  P +
Sbjct: 121 GIKGISCNGRLLYEPWEIETKSGDPYKVYTPYWKSLQQK--EGPRAALPR-TDKLNAPPS 177

Query: 190 PSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +  R  D+          +  +P++  GE+ A   LR +       Y + R+ P    
Sbjct: 178 LPSTDRLDDWNLLPRSPNWAEGFEPVWTPGEKGARARLRAWLDTDAASYDDCRNRPDQDR 237

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G +SP   W+ + +      I PK    S+L+E+ WREF   L+ ++P++
Sbjct: 238 TSRLSPHLHFGEISPVVLWHSVSDAMEAGDI-PKDQGTSFLSEIAWREFSYQLLYYHPTM 296

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +P +      EW+ D   L AW++G TG+PI+DA MRQL T GWMHNR+RMI  SFL
Sbjct: 297 -RDQPLMEKFTDFEWDTDKKALNAWQRGRTGYPIVDAGMRQLWTEGWMHNRVRMIVGSFL 355

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDLL+DWR G  +F   L+D D A+N   WQW A  G D+ P+FRIFNPT Q ++FDP 
Sbjct: 356 VKDLLLDWRDGMRWFWDCLVDADPANNTASWQWIAGCGADAAPFFRIFNPTTQSEKFDPD 415

Query: 422 GTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475
           G +IR ++PEL ++PT++IH P     + L    + L   YP PIVDH       L++Y 
Sbjct: 416 GAYIRRYVPELRDLPTRFIHEPRKASTAILKDAGIVLGETYPDPIVDHSDRRKQALSRYE 475

Query: 476 AAK 478
           A K
Sbjct: 476 AIK 478


>gi|322412229|gb|EFY03137.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 474

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 174/497 (35%), Positives = 257/497 (51%), Gaps = 52/497 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    +Q  Q    +R    + AS+L  
Sbjct: 2   VSVMWFRRDLRIEDQKALARAI-ASQSPTLCVFQFNQKQLSQP--PSRNQSAVVASVLAF 58

Query: 69  QKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           ++ L ++GI   V      + F+   + LD +      T +++N        RRD+   +
Sbjct: 59  KEELKERGIDLYVMHGDLITCFEQLAQQLDQW------TDVYFNYDESGFGRRRDQQAAQ 112

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKA---------LIQNLVQADLR 175
             + + I   ++ D  L     I N + + YKV+TP+ +          ++ +L + +  
Sbjct: 113 WFRAKKINIHAYQDHYLHGSQEIKNQSGEYYKVFTPYYRVWQCLPKETPVVVDLSRGNWL 172

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           SL  P   L        I    D  F  +     +  + A   L  F   ++  Y   RD
Sbjct: 173 SLKTPQATL------ELIETLKDTTFNDV-----MTVKEAKERLNHFVDNQLADYDTTRD 221

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P+  GTS LSPYL +G++S R  +  + +          SG   +L EL WR+FY  + 
Sbjct: 222 FPSRCGTSFLSPYLRLGMVSIRTVYQAVSQ------APASSGQAVFLKELAWRDFYHMVY 275

Query: 296 AFYPS---VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
              P+   + + + F      +EW+++    +AWK+G TG+PIIDAAM+QL   GWMHNR
Sbjct: 276 VANPNQKKLAIQEAF----RHLEWDENPATFKAWKEGQTGYPIIDAAMKQLRATGWMHNR 331

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+ ASFL KDL +DWR+GE YF  QL+D D ASN GGWQWAAS G D+VPYFRIFNP 
Sbjct: 332 LRMVVASFLTKDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPV 391

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL------NYPLPIVDHKKA 466
            QGKRFDP G FIR +LP L +VP +Y++ P    +    S+      +YP P+VDH + 
Sbjct: 392 TQGKRFDPDGDFIRSYLPSLVSVPQKYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQ 451

Query: 467 CHHTLNQYYAAKKQSLL 483
               + +Y  AK+++ +
Sbjct: 452 RKRAIARYEWAKEKAQM 468


>gi|260940315|ref|XP_002614457.1| hypothetical protein CLUG_05235 [Clavispora lusitaniae ATCC 42720]
 gi|238851643|gb|EEQ41107.1| hypothetical protein CLUG_05235 [Clavispora lusitaniae ATCC 42720]
          Length = 548

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 162/491 (32%), Positives = 256/491 (52%), Gaps = 33/491 (6%)

Query: 13  WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W   DLR+ DN  L  A      +   ++  ++  PE    H +   Q ++ + SL Q+Q
Sbjct: 64  WFMRDLRVRDNNGLSHANKLALKNGIPMLCFWVHCPEMELAHNVGDFQKYYRFLSLHQLQ 123

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRLQ 128
           + L++  I     +     D I  +     +  V+ LF N +YE++E+R     + K L+
Sbjct: 124 EKLAKLNINLIIVKAERRADIIPQVLQLLQKYGVSHLFSNLEYEVDELRLATTAMTKFLE 183

Query: 129 HRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADL------------- 174
            ++      +S ++ PG++   +    Y V++P+ +A +  + Q                
Sbjct: 184 EKISFTPCHNSCVVLPGALKTKSKGTQYAVFSPWFRAWMAYVDQELFSKEHFEYDSPIKL 243

Query: 175 -RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK-EKVYYYVE 232
            + L V    L  P    +  RF  Y          IGE  AL  L ++ + +++  Y +
Sbjct: 244 EKQLSVSQQDLEIPDVDVDKERFHKY-------WKMIGEDGALEQLAEYIESDEINKYKD 296

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREF 290
           +RD   ++  S +S ++S G +S R     L++  +  +L     SG F W+ ++ WR+F
Sbjct: 297 ERDFLDLESVSNMSVHISSGTISTRTILQELRQNKKMKNLHTLKTSGVFEWIRQISWRDF 356

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y+H++ ++P VCM KPF    + + W  D    + W  G TGFPI+DA MR LN  G+++
Sbjct: 357 YKHIICYWPYVCMFKPFHLEYDDLSWEYDEDHFERWCSGNTGFPIVDACMRCLNETGYLN 416

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R+I ASFL K+LL+DWR GE+YF+S+L+D D  SNNGGW +A+STG D  PYFRIFN
Sbjct: 417 NRGRLIVASFLSKNLLIDWRNGEQYFLSKLIDSDFCSNNGGWGFASSTGVDPQPYFRIFN 476

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  Q +RFDP G FI+ W+PEL +V  + +H   S    + L  NY  PIV HK+     
Sbjct: 477 PWTQSERFDPDGEFIKKWVPELVDVSPKMLHKETS----DPLCANYTAPIVSHKETRSRA 532

Query: 471 LNQYYAAKKQS 481
           L +Y AA ++ 
Sbjct: 533 LEKYKAAMEEG 543


>gi|76802655|ref|YP_330750.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
 gi|76558520|emb|CAI50112.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
          Length = 462

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 167/477 (35%), Positives = 243/477 (50%), Gaps = 23/477 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M +H  W R DLR+ DN+ L  A      + + +F+   E    H    R + F+  +L 
Sbjct: 1   MRIH--WHRRDLRVADNRGLADAP----GRPVGLFVFD-EAVLDHAAPPRVA-FLLDALS 52

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +   +G      +     D    L +      V  + +NR Y      RD  +   
Sbjct: 53  SLRAAYRDRGSELFIRRG----DPANVLSALADDLGVDVVSWNRDYSGLAADRDDRVADV 108

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    V  + F D++  PPG+I  +A   Y VY+ F K   ++  + D    PVPA  L 
Sbjct: 109 LDEVGVTPQRFHDAICHPPGTITTNAGDPYSVYSYFWKKW-RDREKDD--PYPVPA--LA 163

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                + +P   D  F       P  G   A   L  F ++ +Y Y E RD PA + TS+
Sbjct: 164 DATDETTLPTLADLGFDEPTAELPKAGTAPARGRLAAFLEDDIYRYEEARDYPATECTSR 223

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           LS  L  G +  R    +++E          +  A  + ++L WREFY H++AF P V  
Sbjct: 224 LSADLKFGTIGIRAVDKQVREAIAAAETDSERESAAEFRSQLAWREFYTHVLAFNPEVVT 283

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + +  +   I+W  D  LL AWK+G TG+PI+DA MRQL    +MHNR+RMI ASFL K
Sbjct: 284 -ENYKRYEHDIDWEDDPELLAAWKRGETGYPIVDAGMRQLQAEAYMHNRVRMIVASFLTK 342

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR G  +F  +L+D D A++NGGWQWAASTG D+ PYFRIFNP  QG+R+DP   
Sbjct: 343 DLLIDWRHGYAHFRDRLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAE 402

Query: 424 FIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +IR ++PEL+ V    IH+ H  S   + + +  YP P+VDH +     L+ +  A+
Sbjct: 403 YIREYVPELSGVEADVIHSWHELSPTQRANAAPEYPQPVVDHSQRREQALDMFEQAR 459


>gi|332993097|gb|AEF03152.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2]
          Length = 474

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 169/489 (34%), Positives = 250/489 (51%), Gaps = 36/489 (7%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ DN AL AAC   + K+I ++I          +    + +++ SL  +   
Sbjct: 1   MWFRQDLRVKDNPALNAAC--DEGKIIPIYIYDDNATDGRALGGASNWWLHHSLNSLNDR 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHR 130
           L+    VF+        D    + +         +++NR YE  ++ RDK ++K+L  + 
Sbjct: 59  LNGHLKVFK-------GDPKALIPALMEAYEAKGIYWNRCYEPWQINRDKAIKKQLLDND 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-------- 182
               S + S+L  P  +L      Y+V+TP+ +    N+        P   I        
Sbjct: 112 YEAHSSNGSLLWEPMKVLKKDGTPYRVFTPYYRKGCLNVEPPRYPQAPPARITYADVDDS 171

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           ++T      NI      P    D  F      GE  A   L+ F +     Y + RDIP+
Sbjct: 172 KITKANHSCNIDDLNLLPSLGWDSDFKNHWKPGEDGAADNLQYFIQHAARKYKDARDIPS 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS LSP+L  G +SP Q W  +K+ F            ++L+EL WREF  +L+  +
Sbjct: 232 MNGTSHLSPHLHFGEVSPNQVWYAIKDRFE---TSEDKSIDTYLSELGWREFSYYLLYHF 288

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P++   K F    +K  W  D+  L+AW+ G TG PI+DA MR+L   G+MHNR+RMI  
Sbjct: 289 PTIPT-KNFNDKFDKFNWRSDAKSLKAWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVG 347

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK+LL+ W+ GE +F   L+D DLASN  GWQW A TG D+ PYFRIFNP +QG++F
Sbjct: 348 SFLVKNLLISWQEGERWFWDCLVDADLASNTAGWQWVAGTGADAAPYFRIFNPLLQGEKF 407

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW-----LDKN---DLSLNYPLPIVDHKKACHHT 470
           D QG ++R + PEL ++P +YIH P  W     + K+    L   YP PIVD K +    
Sbjct: 408 DKQGKYVRKYCPELADLPDKYIHKP--WDAPPVIAKDAGVHLGDTYPKPIVDLKASRQRA 465

Query: 471 LNQYYAAKK 479
           L+ + A K+
Sbjct: 466 LDAFQALKE 474


>gi|300864867|ref|ZP_07109715.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
 gi|300337160|emb|CBN54865.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
          Length = 482

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 168/474 (35%), Positives = 247/474 (52%), Gaps = 32/474 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA H S  KV+ +F       ++  ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNIGLAAARHLSQ-KVVGIFCLDFNILQRDDVAPARVAYMIGCLQELQR 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
              + G      Q     +  + +    +  +   +F+N   E     RD  +   L Q 
Sbjct: 65  RYLEAGSQLLILQA----EPTQGIPKLAIALQAKAVFWNLDVEPYSRERDDAVSNALKQA 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-RLTGPV 188
            +  ++F D +L  P  I       Y VYTPF K  +       + +LP+ ++ +LTG  
Sbjct: 121 GIKVENFWDQLLHAPDEIRTGMGTKYTVYTPFWKNWVSKPKAEPVDTLPIMSLEQLTGLT 180

Query: 189 TPSN----------IPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                         +P   +  F    P+    GE  A   L  FC   +Y Y +QR+ P
Sbjct: 181 AKEQEIAKLSGTIRLPSAKELGFVWNAPLIIEPGEDGAQEKLDDFCDRAIYDYDKQRNFP 240

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----SWLNELIWREFYR 292
           A+ GTSQLS  L  G +  R  W    +  V ++ K  + A      +W  EL WREFY+
Sbjct: 241 ALDGTSQLSAALKFGAIGIRTVW----QATVTVMEKCHTEAARINIQTWQQELAWREFYQ 296

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H M  +P +  G  +    +   W+ +  L QAW +G TG+PIIDAAMRQ+N  GWMHNR
Sbjct: 297 HAMYNFPELANGA-YREAFKDFPWDNNQELFQAWCEGKTGYPIIDAAMRQMNQTGWMHNR 355

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL KDL+++W+ GE+YFM  L+DGDL++NNGGWQW+AS+G D  P  RIFNP 
Sbjct: 356 CRMIVASFLTKDLIINWQWGEKYFMQNLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPF 414

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKK 465
            QG++FDP+  +IR W+PEL  + T  + A   + +++   S+ YP PIVDH +
Sbjct: 415 TQGQKFDPKSEYIRKWVPELRWIDTASLLAGKITPIERR--SIGYPEPIVDHNQ 466


>gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
 gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
          Length = 475

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 165/485 (34%), Positives = 266/485 (54%), Gaps = 40/485 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW+R D R+ DN AL+ A    +  V+ V+I   + + +  + +    +++ +L   + 
Sbjct: 6   IVWIRKDFRLVDNPALFHAA--KEGMVVPVYIH--DDYEESSMGSASKWWLHHALNDFKN 61

Query: 71  SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           S+ + +G +    Q  N  D ++ L     Q     +++NR+YE + ++RDK L+    +
Sbjct: 62  SIEKIQGTLIV--QKGNPKDVLQKL---LHQTNAQDIYWNRRYEPHVLKRDKELQAFFSE 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--------SLPVP 180
            ++  ++F+  +L  P  I       YKV+T + KA  ++ V + ++        S PV 
Sbjct: 117 QQINIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKPVE 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           ++ ++      +IP  +D   + I   +   E+ A+ + + F K K+ +Y + RD PA  
Sbjct: 177 SLSVSDLDLLPSIP--WD---ETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEA 231

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-----WLNELIWREFYRHLM 295
             S LSPY + G LS R  ++ L+ +      K  S AF      ++ +LIWR+F   L+
Sbjct: 232 LNSFLSPYFATGQLSARVLYHYLRTK----AEKVSSDAFEQQAEMFIRQLIWRDFAYQLL 287

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +P     ++ +W   +  LQAWK G TG+P++DA MR+L   G+MHNR+RM
Sbjct: 288 YHFPHTTT-EPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRM 346

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFLVK LL+ W+ G  +F   L+D DLA+N  GWQW A +G D+ PYFRIFNP  Q 
Sbjct: 347 IAASFLVKHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQS 406

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FD +G +I+ WLPEL ++P+ YIH    AP   L+K +++LN  YP PIVDHK A   
Sbjct: 407 EKFDKEGEYIKKWLPELKHIPSSYIHKPWEAPADVLEKANVTLNKTYPTPIVDHKAARER 466

Query: 470 TLNQY 474
            L  Y
Sbjct: 467 ALEHY 471


>gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
 gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
          Length = 476

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 167/490 (34%), Positives = 254/490 (51%), Gaps = 42/490 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++    Q     I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLKALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++       P P  R+     
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPISRVQSIKW 168

Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239
            S++P         + P  P            E+ A    +KF   K+  Y E RD P  
Sbjct: 169 GSSLPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 228

Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              S L+PYLS G +S +  +    N+  E       K      S++ +LIWREF  +L+
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEK---QVISFIRQLIWREFSYYLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP   + KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM
Sbjct: 286 YHYP-FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG
Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FD  G +IR W+PEL ++P +YIH    AP   L K+++ L   YP PIVDHK A   
Sbjct: 405 EKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARER 464

Query: 470 TLNQYYAAKK 479
            L  Y + K+
Sbjct: 465 ALCAYKSMKE 474


>gi|311743511|ref|ZP_07717317.1| deoxyribodipyrimidine photo-lyase [Aeromicrobium marinum DSM 15272]
 gi|311312641|gb|EFQ82552.1| deoxyribodipyrimidine photo-lyase [Aeromicrobium marinum DSM 15272]
          Length = 463

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 165/476 (34%), Positives = 234/476 (49%), Gaps = 33/476 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   ++W R DLR+ DN AL AA       V+ + +     W   G  A      +A LL
Sbjct: 17  MGTSVMWFRADLRLHDNPALRAAVEAGPDGVVPLVVLDDHLW---GPGAGVRTACFARLL 73

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
                      V      +        +D+  +        Y         RRD  +E+ 
Sbjct: 74  AEFDERIGGLHVVHGDPVAEVVRVARAVDAGTVHVAAAHTPYG-------ARRDAAVERA 126

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  H V       +  + PG +       Y+VYTPF +A   +  +A     P PA+R  
Sbjct: 127 LADHDVALVRTGSAYAVSPGRVTKPDGTPYRVYTPFHRAWSAHGWRA-----PAPAVRSV 181

Query: 186 GPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             + P    R    P  A+     + P+GE+ A    R + KE+V  Y + RD+P +  T
Sbjct: 182 PWLRPGG--RTHRIPEVAVPEGVTLPPLGEEAARRRWRDW-KEQVTQYDDVRDLPGVDRT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S++S +L  G + PR           DL      G  S++ E+ +REFY  ++   P   
Sbjct: 239 SRMSVHLKWGTIHPRTL-------LADLDGHDSDGVRSYVREIAFREFYADVLHHRPDSA 291

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G  + P   ++E+++    L AW+ G TG+PI+DA MRQL   GWMHNR+RMI ASFLV
Sbjct: 292 HGY-YNPALARMEYDRPGESLDAWRTGTTGYPIVDAGMRQLAAEGWMHNRVRMIVASFLV 350

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL V+W  G  +FM +L DGDLASN  GWQW A  G D+ PY+R+FNPT QGK+FDP G
Sbjct: 351 KDLHVEWTHGAAHFMDRLADGDLASNQHGWQWVAGCGTDASPYYRVFNPTTQGKKFDPDG 410

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           T++R W+PEL +VP +++H P +     D    YP PIVDH +     L +Y A +
Sbjct: 411 TYVRRWVPELRDVPDRFVHEPWTAPTPPD---GYPAPIVDHAEERREALRRYEAVR 463


>gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 474

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 168/488 (34%), Positives = 252/488 (51%), Gaps = 29/488 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            + V ++W R DLR+ DN AL AAC       I +F  +    R  G +++   +++ SL
Sbjct: 2   TIPVSIMWFRQDLRVKDNPALNAACDMGKIVPIYIFDESAPDGRMPGGASKW--WLHHSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + K L+    +F+    +     +E  ++       + +F+NR YE  ++ RDK ++K
Sbjct: 60  KSLNKRLNGHLQIFKGDPQTLIPKLMESFNA-------SSIFWNRCYEPWQINRDKAIKK 112

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L        SF+ S L  P  +L      Y+V+TP+ K     + +   R    P  R+
Sbjct: 113 SLLGSDYEAHSFNGSSLWEPMKVLKKDGTPYRVFTPYYKNGCLQIEEP--RYPKAPPARI 170

Query: 185 TGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           T      N                  I   +  GE  A   L  F +     Y + RDIP
Sbjct: 171 TYADVDDNSDGLAALALLPTIKWDDTIAKEWTPGEDGAADNLSDFIENSARRYKDGRDIP 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           + +GTS+LSP+L  G +SP Q W  +K+ F            ++L+EL WREF  +L+  
Sbjct: 231 SAKGTSRLSPHLHFGEVSPNQVWYAIKDRFG---TSEDKSIETYLSELGWREFSYYLLFH 287

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P++   K F    +K  W  D+  L+AW+ G TG PI+DA MR+L   G+MHNR+RMI 
Sbjct: 288 FPTLP-NKNFNDKFDKFPWRTDAKALKAWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIV 346

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFLVK+LL+ W  GE +F   LLD DLASN+  WQW A +G D+ PYFRIFNP +QG++
Sbjct: 347 GSFLVKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEK 406

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKACHHTL 471
           FD +G ++R + PELN +  +YIH    AP + L +  + L  +YP PIVD K +    L
Sbjct: 407 FDKKGGYVRQYCPELNGLSDKYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRAL 466

Query: 472 NQYYAAKK 479
           + +   K+
Sbjct: 467 DAFQTLKE 474


>gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
 gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
          Length = 476

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 166/490 (33%), Positives = 254/490 (51%), Gaps = 42/490 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++    Q     I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++       P P  R+     
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPISRVQSIKW 168

Query: 190 PSNIPRFFDYPFQAIDPMFP----------IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            S++P         + P  P            E+ A    +KF   K+  Y E RD P  
Sbjct: 169 GSSLPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 228

Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              S L+PYLS G +S +  +    N+  E       K      S++ +LIWREF  +L+
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEK---QVISFIRQLIWREFSYYLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP   + KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM
Sbjct: 286 YHYP-FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG
Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FD  G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+V+HK A   
Sbjct: 405 EKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVEHKAARER 464

Query: 470 TLNQYYAAKK 479
            L  Y + K+
Sbjct: 465 ALCAYKSMKE 474


>gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
 gi|2499552|sp|Q55081|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
 gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803]
          Length = 488

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 171/480 (35%), Positives = 243/480 (50%), Gaps = 23/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ- 69
           L+W R DLR+ D+ AL A      AK++ VF    +  +   ++  +  ++   L  +Q 
Sbjct: 20  LLWHRRDLRLNDHLAL-AKARQKTAKIVGVFCLDNKILQAEDMAPARVAYLLGCLQSLQD 78

Query: 70  --KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             + L  + +VFQ        D ++ L           + +    E    +RD  + + L
Sbjct: 79  HYQRLGSELLVFQA-------DPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQAL 131

Query: 128 QHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVP 180
           + R +  + + D ++  PG +L  A   Y VYTPF K   Q           DL+ L   
Sbjct: 132 RERGLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKDLQGLTPA 191

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                 P+ P  IP+  D  F    P+    GE+ A   L  F    +  Y + R+ PA+
Sbjct: 192 EKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPAL 251

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAFY 298
            GTSQLS  L  GV+SPR  W    E +     +    +  +W  EL WREFY+H +  +
Sbjct: 252 DGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFYQHCLYSF 311

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P++  G    P+ E   W ++    QAW +G TG+PIIDAAM QLN  GWMHNR RMI A
Sbjct: 312 PALAQGPYRSPFQE-FPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRMIVA 370

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL+KDL+++W+ GE YFM  L DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++F
Sbjct: 371 SFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPHTQAQKF 429

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP+G +IR WLP+L    T  +         +  S+NYP PIVDH +       +Y   K
Sbjct: 430 DPEGEYIRTWLPQLARFDTGDLLT-GKLTPGSRRSVNYPEPIVDHNQQQREFKRRYQLVK 488


>gi|157827751|ref|YP_001496815.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389]
 gi|157803055|gb|ABV79778.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389]
          Length = 475

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 165/470 (35%), Positives = 243/470 (51%), Gaps = 32/470 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQVQ 69
           +VWLR +LR+ DNK+  AA  NSD K++ +FI  T    R      R+  F+  +L  + 
Sbjct: 6   IVWLRRNLRLHDNKSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLCLIN 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L +            +   ++ +       ++  ++ +  YE N + RDK +++ L  
Sbjct: 65  DELKKLKGKLLVF----YGKPLDIIPKLAATLKIKNIYADEDYEPNNIERDKKVQELLGS 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTP----FRKALIQNLVQADLRSLPVPAIRLT 185
                 + D +L+ P  +L    + YKVYTP    FRK +  N   +  + L   +  L 
Sbjct: 121 NCTLNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFRKFIADNGSISHNKLLTNYSYNLD 180

Query: 186 GPV-TPSNIP-RFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQ 233
           G + TP +I  +  D      + +  IG           +NA ++L KF   ++  Y   
Sbjct: 181 GKLYTPQDIELKTIDLNIGKSEALKQIGYVYKEDELWQPKNAQNVLDKFITRRINRYKID 240

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD   + GTS +SPYL  G++S R+C+ +              G+ +W+NELIWREFY  
Sbjct: 241 RDFLYLDGTSTISPYLRFGLVSIRECYRKA------FNAASNPGSITWINELIWREFYAT 294

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P+    +    +  KI WN        +    TG+PIIDAA++QL   GWMHNR 
Sbjct: 295 ILYHFPNTVNEEFLEKYKNKIPWNNKKEYFDKFINAETGYPIIDAAVKQLVGDGWMHNRA 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASF  K+LL+DWR GEE+F   L+D +LASN GGWQWA+S G D+ PYFRIFNP  
Sbjct: 355 RMIVASFFSKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFNPYT 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           QGK FDP   +I+ +LP L NV    IH  +S    + +  NYP PIVD+
Sbjct: 415 QGKNFDPDAEYIKKYLPILKNVQPHIIHNINS----HKMYDNYPKPIVDY 460


>gi|239835007|ref|ZP_04683335.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
           3301]
 gi|239823070|gb|EEQ94639.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
           3301]
          Length = 461

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 168/475 (35%), Positives = 260/475 (54%), Gaps = 37/475 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQVQ 69
           LVWLRNDLR+ DN AL+AA     A + A+F+  +  Q R  G + R   ++  SL  + 
Sbjct: 6   LVWLRNDLRLADNPALHAAFKLGGA-ITALFVHESNPQLRDPGAAVRW--WLEQSLDLLA 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL+++ I           +++  ++    +     +F+NR+Y   E   D +++  L+ 
Sbjct: 63  RSLNERNIELIVADG----EALNTIEQLIEENNFDTVFWNRRYAPQEREVDAVIKSGLKD 118

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + +  +SF  ++L+ P  I +     Y+V+TP+ K+L Q+ V    R LP+P  R     
Sbjct: 119 KGLRVESFAGNLLVEPWEIKSGNGGSYQVFTPYAKSLRQHGVS---RPLPLPD-RSVETT 174

Query: 189 TPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           T  + P+  +Y      + +  ++ IGE  A+  L  F    +  Y   RD P + GTS+
Sbjct: 175 TVKHTPKQKNYKEAVWSRKMSGLWMIGEAAAIDQLYHFFDTTIRDYAGDRDRPDLDGTSK 234

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWREFYRHLMAFYPSV 301
           LS +L  G +SPRQ W+      V L+ +  S   G   +L+ELIWR+F+ H + + P +
Sbjct: 235 LSAHLRFGEISPRQVWHAT----VSLMDQDHSTVPGGQKFLSELIWRDFHYHQLYYRPDI 290

Query: 302 C---MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
               M            W  +S  + +W++G TG PIIDA MRQL   GWMHNR+RM+ A
Sbjct: 291 AEIDMRDTL----ANTRWQSNSVGINSWRRGKTGIPIIDAGMRQLWATGWMHNRVRMLVA 346

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S L K++ +DWR GE++F   L+D D+ASN G WQW A  G D+ PYFR+FNP +QG++F
Sbjct: 347 SALCKNMQIDWREGEKWFWDTLVDADVASNPGNWQWVAGCGMDAAPYFRVFNPVLQGEKF 406

Query: 419 DPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKAC 467
           D +G ++R W+PE+  +P  +IH    AP + L +  + L   YPLPI    KAC
Sbjct: 407 DTKGVYVRKWVPEIAALPDCWIHKPFAAPPAVLREAGVVLGQTYPLPIFTPSKAC 461


>gi|325103845|ref|YP_004273499.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
 gi|324972693|gb|ADY51677.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
          Length = 448

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 171/491 (34%), Positives = 250/491 (50%), Gaps = 70/491 (14%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-------ATPEQWRQHGI 53
           +   T   + LVWLR DLR+ D  ALY A  N +  V+ +FI         P ++     
Sbjct: 11  LNTITMKQISLVWLRRDLRLDDQAALYHALKN-ETNVLPLFIFDTTILNLLPNKF----- 64

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
             R+  FI+  L  ++K L               D   E +D + ++     ++ NR YE
Sbjct: 65  -DRRVDFIHQVLSDMKKELDAINSSLLVEYGDPIDVFSELIDRFTIKA----IYTNRDYE 119

Query: 114 INEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              + RD+ ++K ++ + I  K+F D  +     I+      Y ++TP+ +     L   
Sbjct: 120 PTAIARDESVKKLVESKGIAFKTFKDQCIFEQSEIVKDDGSPYSIFTPYSRKWKSKLNDF 179

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFC--KEK 226
            L+S P                +++ + +Q  D  FP    +G      +  KF   +E 
Sbjct: 180 YLKSYPCK--------------KYYHHFYQGDDFKFPDLESLGFSKTDIVYNKFVLSREI 225

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           V +Y + RD PA++GTS+ S +L  G +S R+   R   ++ +          ++LNELI
Sbjct: 226 VRHYDKTRDFPALKGTSRASMHLRFGTISIRKL-ARYALDYNE----------TYLNELI 274

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR+FY  ++  YP +     F    +KI W  +    +AW +G TG+PI+DA MR+LNT 
Sbjct: 275 WRDFYMMILYHYPKIVR-HSFKADYDKIPWLNNEKDFKAWCEGKTGYPIVDAGMRELNTT 333

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNR+RMI ASFL K LL+DWR GE YF  +L D DL++NNGGWQWAAS+G D+VPYF
Sbjct: 334 GFMHNRVRMIVASFLTKHLLIDWRWGEAYFAEKLDDYDLSANNGGWQWAASSGCDAVPYF 393

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           RIFNP  Q K+FDP   +IR W+PEL+                   SL+YP PIV+HK A
Sbjct: 394 RIFNPEEQTKKFDPNRAYIRKWIPELD-------------------SLDYPKPIVEHKFA 434

Query: 467 CHHTLNQYYAA 477
               LN Y  A
Sbjct: 435 RERALNVYKKA 445


>gi|294654321|ref|XP_456362.2| DEHA2A00594p [Debaryomyces hansenii CBS767]
 gi|199428788|emb|CAG84307.2| DEHA2A00594p [Debaryomyces hansenii]
          Length = 555

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 173/498 (34%), Positives = 254/498 (51%), Gaps = 35/498 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           S+  ++LR D R  DNK L  A      +   +I   I   E++  H +S  +  ++  S
Sbjct: 65  SIAHLFLR-DFRTIDNKGLSIASELATTTKTPLITFHIFCLEEFDAHSVSPFKLEYMLGS 123

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLL 123
           L  ++K L +  I     Q     D    +  +  Q   + +F N +YE++E+R   KL+
Sbjct: 124 LDVLKKDLREMNIPLVSLQVEKRKDVPTKIAEFLEQNNTSHVFCNMEYEVDELRLLSKLV 183

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
              L   +      DS ++ PG +   +    Y V+TP+ KA    L   D   +  P  
Sbjct: 184 CFLLDKHISFNPVHDSCIVKPGELKTKSKGTQYAVFTPWYKAWCNYLKIEDAPFMEYPRP 243

Query: 183 RLTGPVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCK-EKV 227
                 +  N  + FD                 +  D  +  GE  A   L  F + +K 
Sbjct: 244 HANESFSDPN--KLFDSEIPQVPESKRLTHDQQKEFDTCWKCGEHEAWSALSVFLESDKF 301

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELI 286
             Y E R+  + +  S++S  +S G++S R      L+ +FV  +   + G   W+ ++ 
Sbjct: 302 KKYDESRNEISEESVSRMSCPISSGIISTRSIIRYILENKFVKKIDSGEQGT-GWIRQIA 360

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR+FYRH++  +P VCM KPF+   + + W  +S     W QG TGFPI+DAAMRQLN  
Sbjct: 361 WRDFYRHILCNWPYVCMFKPFLLEYDDLNWEYNSDHFYKWCQGKTGFPIVDAAMRQLNQT 420

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G++HNR RMI ASFL K LL+DW+ GE YFM  L+DGD ASNNGGW +++STG D  PYF
Sbjct: 421 GYLHNRCRMIVASFLSKHLLIDWKYGEYYFMEHLIDGDFASNNGGWGFSSSTGVDPQPYF 480

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY-IHAPHS-----WLDKNDLSLNYPLPI 460
           RIFNP +Q +RFD +GT+IR W+PEL ++  +  IH P+        +KN     YP PI
Sbjct: 481 RIFNPWLQSERFDKKGTYIRTWVPELKDIQDEKGIHNPYEKGYGHIAEKN----GYPKPI 536

Query: 461 VDHKKACHHTLNQYYAAK 478
           VDHK      LN++  AK
Sbjct: 537 VDHKYCRERALNRFKDAK 554


>gi|229097643|ref|ZP_04228601.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
 gi|229116646|ref|ZP_04246032.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
 gi|228666818|gb|EEL22274.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
 gi|228685782|gb|EEL39702.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
          Length = 476

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 164/485 (33%), Positives = 260/485 (53%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +    ++    + S   Q R+T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGRTEEE----IRSLIEQLRITAVYWNICYDPDRLQSNQKMKMMLEGK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQIIPKPISK--VQSIKWGNSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + ++ ++   E+ A    +KF   K+ +Y E RD P     S 
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQNVHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S R  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP 
Sbjct: 234 LAPYLSFGQISVRLMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   WN +  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 290 FTVYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 410 NGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|84495534|ref|ZP_00994653.1| Phr [Janibacter sp. HTCC2649]
 gi|84385027|gb|EAQ00907.1| Phr [Janibacter sp. HTCC2649]
          Length = 455

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 166/477 (34%), Positives = 240/477 (50%), Gaps = 46/477 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++WLR DLR  D+ AL AA   +  +++  ++  P  W   G   R      A+ L+  +
Sbjct: 4   VLWLRRDLRRADHPALLAARDAAGGELVVAYVIDPALWAGAGAVRRA---WLAAALEATR 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
                G+   +       D  E + +   +   T +   R+      RRD+ +   L  +
Sbjct: 61  EEFDDGLTLLW------GDPREVVPALAKRVGATSVHVTRETTPFGRRRDETVASSLAAQ 114

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I          + PG + N +   YKV+TPF KA   +         P PA R      
Sbjct: 115 GIEWVETGTPYAVGPGLVQNLSGAPYKVFTPFAKAWRGH-------GWPDPAPR------ 161

Query: 190 PSNIP----RFFDYPFQAID--------PMFPI-GEQNALHILRKFCKEKVYYYVEQRDI 236
           PS +P    R      QAI+        P  P  GE+ A+   R+FC+  +  Y   RD+
Sbjct: 162 PSELPLRHVRNDAKATQAIEEALAAPDLPDLPAAGERAAMARWREFCETGLTAYATDRDL 221

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA  GTS+LSPYL +GV+ PR           DL  +   GA +++NEL WREFY  ++ 
Sbjct: 222 PATDGTSRLSPYLKLGVVHPRTL-------LADLAGRRGEGAQTYINELGWREFYADVLW 274

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             PS        P    + +++ +  ++AW+ G TG+PI+DA MRQL   GWMHNR+RMI
Sbjct: 275 HNPSSAWKDLRDP-LAGMAYDEPADAIEAWQTGTTGYPIVDAGMRQLLAQGWMHNRVRMI 333

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFL KDL V W +G  +F+  L+DGD+ASNN GWQW A TG D+ PYFR+FNP  QG+
Sbjct: 334 TASFLTKDLHVWWPVGARHFLELLIDGDIASNNHGWQWVAGTGTDASPYFRVFNPVTQGE 393

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           +FD  G ++R W+PEL ++  +  H P  W   +  +  YP  IVDH +     L +
Sbjct: 394 KFDVDGDYVREWVPELAHLAGKAAHQP--WEHPDGYAHGYPQRIVDHAEERREALRR 448


>gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           B4264]
 gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264]
          Length = 476

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 167/490 (34%), Positives = 252/490 (51%), Gaps = 42/490 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++    Q     I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLKALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++       P P  R+     
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPISRVQSIKW 168

Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239
            S++P         + P  P            E+ A    +KF   K+  Y E RD P  
Sbjct: 169 GSSLPASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 228

Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              S L+PYLS G +S +  +    N+  E       K      S++ +LIWREF  +L+
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSFFEK---QVISFIRQLIWREFSYYLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP     KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM
Sbjct: 286 YHYPFTAY-KPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG
Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FD  G +IR W+PEL ++P +YIH    AP   L K+++ L   YP PIVDHK A   
Sbjct: 405 EKFDKNGEYIRRWIPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARER 464

Query: 470 TLNQYYAAKK 479
            L  Y   K+
Sbjct: 465 ALCAYKNMKE 474


>gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           G9842]
 gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           G9842]
          Length = 476

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 165/485 (34%), Positives = 262/485 (54%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++    Q     I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +    ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISK--VQSIKWGSSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + I+ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 ASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP 
Sbjct: 234 LAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 290 FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 410 NGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|190349137|gb|EDK41731.2| hypothetical protein PGUG_05829 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 607

 Score =  267 bits (682), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 158/485 (32%), Positives = 257/485 (52%), Gaps = 23/485 (4%)

Query: 17  DLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
           D R +DN  L AA       +  ++ +++   +    HG+S  Q  +   SL  +++ L+
Sbjct: 122 DFRQSDNTGLNAASRMAAKENLPLVCLYVLCRDDLFAHGVSGFQLEYRLRSLELLREELA 181

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRLQHRVI 132
           QK I   +       + +  +     Q +++ LF N +YE++E+RR   L ++ L+  + 
Sbjct: 182 QKNIPLVFLNVDERKEVVPIVKEKAQQLKISHLFANIEYEVDELRRYTNLCKELLKADIS 241

Query: 133 CKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNL--------VQADLRSLPVPAIR 183
            +  +D+ L  PG+I+  +    + V+TP+ +A   +L        V+A   +      +
Sbjct: 242 FQPHNDTTLAVPGTIVTKSKGTQFSVFTPWYRAWCAHLNKMKDPFQVRAKPEANSDEFRQ 301

Query: 184 LTGPVTPSNIPR------FFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDI 236
               +  S IP+        +   +A +     GE  A   L+ F    ++  Y   R+ 
Sbjct: 302 RNSHLFDSKIPQAPPGKQLTEKQKEAFEKYHKPGENAAWDDLQDFITSGRIKRYNVDRND 361

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           P++ G S++S + + G ++ R     L   + +  +     GA  W  ++ WR+FYRH++
Sbjct: 362 PSVNGVSRMSVHFASGTINARTVIRSLLDHKLLRTIDSGNDGAREWARQVAWRDFYRHVL 421

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +CM KPFI   ++++W  +S   + W QG TG+PI+DAAMRQL+ +G++HNR+RM
Sbjct: 422 CNWPHICMFKPFISNMDEVKWEYNSDHFERWCQGKTGYPIVDAAMRQLSEMGYLHNRVRM 481

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL K L++DWR GE YF+  L DGD  SNNGGW +++S G D  PYFRIFNP  Q 
Sbjct: 482 VVASFLSKHLMIDWREGERYFLENLADGDFPSNNGGWGFSSSVGVDPQPYFRIFNPWTQA 541

Query: 416 KRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQ 473
           ++FD +G +IR WLPEL  +   + IH P+    +     N YP PIVDHK A    L +
Sbjct: 542 EKFDKKGDYIRKWLPELREIQDVKGIHNPYENGYRQIAEKNGYPPPIVDHKTARERALER 601

Query: 474 YYAAK 478
           Y  AK
Sbjct: 602 YKEAK 606


>gi|239817579|ref|YP_002946489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110]
 gi|239804156|gb|ACS21223.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110]
          Length = 515

 Score =  267 bits (682), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 177/492 (35%), Positives = 260/492 (52%), Gaps = 38/492 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ DN ALY A      +V+ VF+             R+  FI  SL+++++
Sbjct: 16  LMWFRRDLRVDDNAALYHALRACR-QVVCVFVFDRAILDPLPRIDRRVEFIRESLVELEE 74

Query: 71  SLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRL 127
            L     G++ ++        +IE + +      V  +F NR  E + + RD ++L    
Sbjct: 75  ELRALSGGLIVRHAH------AIEEIPALAHSLDVQAVFANRDDEPDALARDAQVLGALA 128

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   ++ DS +     +LN   Q Y V+TP+++A +  +    L+  PV +      
Sbjct: 129 NAGVSFYTYKDSTVFERDELLNKTGQPYTVFTPYKRAWLAKVDAFFLKPYPVRSHADALA 188

Query: 188 V------TPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                  TP+  P   D  F      +   P G Q A  +   F  +++  Y   R+ PA
Sbjct: 189 PPPAAHRTPA--PSLEDLGFGRSNLSELGIPTGSQGAAALFEDFF-QRIDRYDAARNFPA 245

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S L  +L  G +S RQ      +    L ++  +GA +WL ELIWREFY  ++  +
Sbjct: 246 VRGPSYLGVHLRFGTVSIRQLAGVAHQ----LFLQGDAGAAAWLGELIWREFYFQILVHF 301

Query: 299 PSVCMG---KPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           P V  G   K F P  +KI+W+   H   L +AW QG TG+P++DAAM Q+N  G+MHNR
Sbjct: 302 PHVHSGGESKSFRPEYDKIQWHHGKHADQLFEAWCQGRTGYPLVDAAMLQINQSGYMHNR 361

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+ ASFL KDL +DWR GE YF   L D +LASNNG WQWA+S+G D+ P+FRIFNP 
Sbjct: 362 LRMVVASFLCKDLGLDWRRGERYFALHLNDFELASNNGNWQWASSSGCDAQPWFRIFNPV 421

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKA 466
            Q +RFDP+G FIR +LP+L  +    IHAP +     L+   + L   YP P+VDH +A
Sbjct: 422 TQSERFDPEGKFIRRYLPQLAGLSNAAIHAPWTASPVELEAAGIKLGETYPRPVVDHAEA 481

Query: 467 CHHTLNQYYAAK 478
              T+ +Y A +
Sbjct: 482 REQTMRRYAAVR 493


>gi|326332769|ref|ZP_08199030.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium
           Broad-1]
 gi|325949468|gb|EGD41547.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium
           Broad-1]
          Length = 446

 Score =  267 bits (682), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 163/480 (33%), Positives = 239/480 (49%), Gaps = 40/480 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+W R DLR+ D+ AL AA   ++ +V+ +F+  P   R  G S R+   + ASL 
Sbjct: 1   MTTSLMWFRRDLRLGDHPALQAAA--AEGQVVPLFVLDP---RLAG-SGRRWERLLASLA 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++      ++ Q        D  E +     +   +++  + +      RRD  +E+R
Sbjct: 55  ALREETDGALVIRQ-------GDPAEVVADVAAEAGASQVHVSTETTPYGRRRDAAVEQR 107

Query: 127 LQHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    I      S   + PG + N +   Y+V+TPF +A  ++  +A       P +   
Sbjct: 108 LAAAGIGLVGTGSPYAVTPGRVRNASGAPYRVFTPFLRAWREHGWRAPAGD---PEVEWM 164

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +P   D            GE+ ALH    FC E +  Y E RD P +  TS+L
Sbjct: 165 TKLESDPLPSHSDQE---------AGERAALHRWEDFCAEDLAGYAESRDRPDLDRTSRL 215

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPSV 301
           S  L  G + PR           DL       +      ++ EL WREFY  ++   P  
Sbjct: 216 SVALKYGEIHPRTL-------LADLGTHGTGASGEDVERFVAELAWREFYADVLWHDPGS 268

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +      + + +  D  LL+AWK G TG+P +DA MRQL   GWMHNR+RM+ ASFL
Sbjct: 269 AW-RDLKDGLDGMRYEDDPELLEAWKSGTTGYPFVDAGMRQLLAEGWMHNRVRMVVASFL 327

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDL + W +G  +FM  LLDGD+ASN+ GWQWAA TG D+ PYFR+FNP  QG RFDPQ
Sbjct: 328 VKDLHMWWPVGARHFMDHLLDGDMASNSHGWQWAAGTGTDAAPYFRVFNPVTQGIRFDPQ 387

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           G ++R W+PEL ++P    H P  W     L+  YP P+VDH +     L++    K+ +
Sbjct: 388 GDYVRRWVPELRHLPGAAAHEP--WRHSEGLAHGYPEPVVDHAEERREALDRLAELKEST 445


>gi|300704913|ref|YP_003746516.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum CFBP2957]
 gi|299072577|emb|CBJ43927.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Ralstonia solanacearum CFBP2957]
          Length = 522

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 179/482 (37%), Positives = 246/482 (51%), Gaps = 47/482 (9%)

Query: 11  LVWLRNDLRITDNKAL-YAACHNSDAKVIAVF---IATPEQWRQHGISA-RQSHFIYASL 65
           LVW R DLR  D+ AL YA  H  +     VF   I  P   R  G+ A R+  FI A++
Sbjct: 28  LVWFRRDLRHIDHAALHYALRHCREVFCAFVFDRGILDPLLAR--GLRADRRVEFIRAAV 85

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             ++ +L + G   IV         D +   + S   Q  V  +F N   E   + RD  
Sbjct: 86  EALRSALREAGGELIVLH-------DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAA 138

Query: 123 LEKRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV- 179
           +   L  R  C  FD  D V+     +LN   + Y V+TP++ A +  +   DLR+ P+ 
Sbjct: 139 VRDALA-RQPCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIE 197

Query: 180 PAIRLTG-------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
           P +           P TPS     F     ++  + P G   A  +L  F      Y+  
Sbjct: 198 PHLHALARPPQGLAPATPSLEAMGFARSNLSVIAL-PTGMSGAEALLDDFATRMDDYHA- 255

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD PA++G S LS +L  G +S R    R        ++    GA +WL+ELIWR+FY 
Sbjct: 256 RRDYPAVRGPSYLSTHLRFGTVSIRTLAARAHSA----MLHGSRGAATWLSELIWRDFYF 311

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            ++   P +  G  F P  ++I W           AW+   TG+P++DAAM Q+   G+M
Sbjct: 312 MILHHRPDLAEGTSFRPEFDRIRWVGGETGDVRFAAWRDARTGYPLVDAAMLQIRQSGYM 371

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRM+TASFL+KDL VDWR GE +F   L D D A+NNGGWQWAAS+G D+ P+FRIF
Sbjct: 372 HNRLRMVTASFLIKDLGVDWRRGEHHFADALNDFDFAANNGGWQWAASSGCDAQPWFRIF 431

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIV 461
           NP  Q ++FDPQG FIR +LP+L  +P +Y+HAP  W    D        L   YP PIV
Sbjct: 432 NPVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAP--WTAPADVLKAAGVALGATYPRPIV 489

Query: 462 DH 463
           +H
Sbjct: 490 EH 491


>gi|330951089|gb|EGH51349.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae Cit 7]
          Length = 367

 Score =  266 bits (681), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 206/369 (55%), Gaps = 6/369 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMER--GPTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S+ D +L  PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP   + F  P +A+  ++P GE  A   +  F  E++ YY ++RD P   GTSQ
Sbjct: 179 IKSDPIPDQVKGFATPAKALRELWPAGEAEARRRMDAFADEQISYYKDERDFPTKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGNVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGE 373
           LL+DWR GE
Sbjct: 359 LLIDWREGE 367


>gi|229145749|ref|ZP_04274130.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
 gi|296503680|ref|YP_003665380.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
 gi|228637730|gb|EEK94179.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
 gi|296324732|gb|ADH07660.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
          Length = 476

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 166/490 (33%), Positives = 257/490 (52%), Gaps = 42/490 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I    Q     I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QDETFSIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +    ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++       P P  R+     
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPFSRVQSIKW 168

Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +++P         + P+ P            E+ A    +KF   K+  Y E RD P  
Sbjct: 169 GNSLPASLSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ 228

Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              S L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+
Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP   + KP     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM
Sbjct: 286 YHYP-FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG
Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FD  G +IR W+PEL ++P +YIH    AP   L K+++ L   YP PIVDHK A   
Sbjct: 405 EKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARER 464

Query: 470 TLNQYYAAKK 479
            L  Y + KK
Sbjct: 465 ALCAYKSMKK 474


>gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
 gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
          Length = 495

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 169/494 (34%), Positives = 257/494 (52%), Gaps = 33/494 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR  D+ AL+ A      +V   FI       +   + R+  FI+ASL ++  
Sbjct: 8   LVWFRRDLRSFDHAALHHALRQG-RQVYCAFIFDRAILDELPSTDRRVEFIHASLQELDT 66

Query: 71  SLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +L     G++ ++ +        + +     +  V  +F N  YE   + RD  +   L 
Sbjct: 67  ALRALGGGLIVRHARAE------QAIPQLAAELGVDAVFCNHDYEPQAIARDGAVAAALA 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIR 183
                 +++ D V+     +L+ + + + V+TP++ A ++     L  AD+ +  +  +R
Sbjct: 121 TDGRKLQTYKDHVIFEKDEVLSQSGKPFSVFTPYKNAWLKKLHTELAPADMPAYEIDTLR 180

Query: 184 LTGPVTPSN---IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                 P+N   IP   +  F+  +      P G Q    +   F  +++  Y   RD P
Sbjct: 181 AHFAPLPANLSGIPALSELGFEKTNLTELNIPTGMQGGQALFDDFI-DRMPDYDSTRDFP 239

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S R    R  +     +    +GA  WL+EL+WR+FY  ++  
Sbjct: 240 AVKGPSYLSVHLRFGTVSIRALVRRALDAM--RIGAGGTGAAVWLSELVWRDFYFMILYQ 297

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +P V   + F P  + I W    H   L QAW  G TG+P++DAAM QLN  G+MHNRLR
Sbjct: 298 HPHV-RERAFKPDYDAIIWENGPHAEELFQAWCDGRTGYPLVDAAMAQLNQTGYMHNRLR 356

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+TASFL+KDL +DWR GE YF  +L D DLA+NNGGWQWA+S+G D+ PYFRIFNP  Q
Sbjct: 357 MVTASFLIKDLGIDWRWGERYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPLTQ 416

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVDHKKACH 468
            ++FDP G FIR +LP+L  +  + IHAP         +    L  +YP P++ H +A  
Sbjct: 417 SEKFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGITLGRDYPHPLLQHDEARA 476

Query: 469 HTLNQYYAAKKQSL 482
            TL +Y   KK ++
Sbjct: 477 RTLLRYAVVKKVTV 490


>gi|254238599|ref|ZP_04931922.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719]
 gi|126170530|gb|EAZ56041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719]
          Length = 394

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 215/387 (55%), Gaps = 20/387 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
             + ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +
Sbjct: 2   NGLPMNLIWFRCDLRTTDNSALLAAADGR--PCVALYLLSPAQWREHDDAPCKVDFWLRN 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L+   I      C ++  + E +   C +  V  +  N++Y +NE RRD+ + 
Sbjct: 60  LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +RL+ + +   S  D +   PGS+L      ++V++ FRK   + L QA      +P +R
Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQA------LPGVR 173

Query: 184 ----------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                     L     P  +P  F  P  ++  ++P GE+ A   LR F  + +  Y E+
Sbjct: 174 PRPQPQPPHALASDPLPDAVP-AFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHER 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA+ GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H
Sbjct: 233 RDFPALPGTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKH 292

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  YP V   +PF   TE + W +    L+AW+QG TG PIIDAAM QL   GWMHNRL
Sbjct: 293 ILVGYPRVSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMSQLLATGWMHNRL 352

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQL 380
           RM+ A FL K+LL+DWR GE +FM  L
Sbjct: 353 RMVVAMFLSKNLLIDWREGERWFMRHL 379


>gi|228953466|ref|ZP_04115511.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806205|gb|EEM52779.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 476

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 165/486 (33%), Positives = 264/486 (54%), Gaps = 34/486 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++    Q     I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLKALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPINR--VQSIKWGNSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNVHSM 233

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----SWLNELIWREFYRHLMAFYP 299
           L+PYLS G +S +  ++ L    ++   + +S  F     S++ +LIWREF  +L+  YP
Sbjct: 234 LAPYLSFGQISVKLMFHYL----INKSTERQSSLFEKQVNSFIRQLIWREFSYYLLYHYP 289

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              + KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  AS
Sbjct: 290 -FTVYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVAS 348

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD
Sbjct: 349 FLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFD 408

Query: 420 PQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQ 473
             G +IR W+PEL ++P +YIH    AP   L K+++ L   YP PIVDHK A    L  
Sbjct: 409 KNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCA 468

Query: 474 YYAAKK 479
           Y + K+
Sbjct: 469 YKSMKE 474


>gi|229156755|ref|ZP_04284842.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
 gi|228626675|gb|EEK83415.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
          Length = 476

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 164/483 (33%), Positives = 259/483 (53%), Gaps = 28/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++  + D R+ DN AL+ A  + +  V+ V++    Q     I +    +++ +++ VQK
Sbjct: 6   IMMFQKDFRLYDNPALFEAAQSGE--VVPVYV----QDETFSIGSASKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNTQEEILSLIE----QLNITAVYWNSCYDPDRLKSNQKMKIVLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + I+ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHIESIWNPTEEGAYKTCKKFFFSKLASYSEGRDFPNENAHSMLA 235

Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           PYLS G +S R  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP   
Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP-FT 291

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           + KP     E   WNK+  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLV
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411

Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476
            +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y +
Sbjct: 412 EYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKS 471

Query: 477 AKK 479
            K+
Sbjct: 472 MKE 474


>gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
 gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
          Length = 487

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 170/504 (33%), Positives = 252/504 (50%), Gaps = 42/504 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A ++    +VW R+DLR+TDN AL  A   S    + V++   E  R  G +AR   +
Sbjct: 1   MPAESSAQAAIVWFRDDLRLTDNPALARAAE-SGRPFVCVYVLEREGTRPLGGAAR--WW 57

Query: 61  IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           +  +L  +  SL+  G   +V +  +        E LD+  +       ++NR+Y+    
Sbjct: 58  LDGALRSLDASLAGHGGRLLVLEGDERETIAALAEELDAGAV-------YWNRRYDGIAR 110

Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL- 174
             D  L++ L+   I  +SF+ ++L  P  +   +   ++V+T + R AL    V A L 
Sbjct: 111 ETDGALKRSLKEAGIEAESFNGALLREPWELQTGSGGAFQVFTAYWRAALKSGDVSAPLA 170

Query: 175 -------RSLPVPAIRLTGPVTPSNI-PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
                   +LP    R    +    + P   D+     +   P  E+ AL +L +F  +K
Sbjct: 171 EPSTWRFHTLPASLARRALKIDALGLLPTRPDWAGGLREAWVPT-EEAALELLERFLDKK 229

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           +  Y E RD P    TS+LSPYL  G LS RQ W+       +      +    +++EL 
Sbjct: 230 IRGYGEARDRPDRPATSRLSPYLRFGQLSARQVWHAAMAAAREGGAAVAADIEKFVSELG 289

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           WREF   L+  +P +    P   + E+ +   W  D     AW +G TG+P++DA MR+L
Sbjct: 290 WREFDTSLLYHFPEL----PTRNYRERFDAMPWRDDEAGFTAWCRGRTGYPLVDAGMREL 345

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
            T GWMHNR+RM+ ASFL+K LL+DWR GE +F   L+D D+A+N+  WQW A  G D+ 
Sbjct: 346 WTTGWMHNRVRMVVASFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGCGADAA 405

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLN 455
           PYFRIFNP  QG++FDP+G ++R W+PEL  +P   IH P  W  K          L   
Sbjct: 406 PYFRIFNPVTQGRKFDPEGDYVRRWVPELARLPADAIHEP--WRAKPIVLEAAGVVLGQT 463

Query: 456 YPLPIVDHKKACHHTLNQYYAAKK 479
           YP PIVDH  A    L      K+
Sbjct: 464 YPEPIVDHDAARQRALGALELTKR 487


>gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614]
 gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614]
          Length = 478

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 252/487 (51%), Gaps = 36/487 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP--EQWRQHGISARQSHFIYASLLQV 68
           LVW R DLRI DN AL+ A  +   +V+ VFI  P  +    H +      +++ SL  +
Sbjct: 4   LVWFRQDLRIKDNPALFEAAKS--GRVLPVFILEPADKTGETHPLGGASRWWLHHSLKAL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L   G+V       +       +     +  V  +F+NR YE   + RD  L+  L+
Sbjct: 62  QQDLP--GLVLLKGDARHL------IPEVAKRAGVEAVFWNRCYEPYAIERDTDLKSSLK 113

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTG 186
                 KSF  S+L  P  I   +   YKVY+PF KA  Q  ++ D  +LP P  + +  
Sbjct: 114 DDGYEVKSFKASLLYEPWEIETQSGGPYKVYSPFWKAARQ--IEID-DALPAPEKLDIAD 170

Query: 187 PVTPSNIPRFFDYP-----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                 +  F   P      +  + ++  GE  A   L  F +E +  Y + R+ P +  
Sbjct: 171 YDGGEELESFDLLPKKPNWAKGWEDLWTPGEAGASERLGSFLEEGLKGYGKLRNRPDLPN 230

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S+LSP+L  G +SPRQ W+   ++ +D           +L+E+ WREF  +L+  +P +
Sbjct: 231 VSRLSPHLHFGEISPRQIWH-ATQDVMDRRSSLGDDGMKFLSEIAWREFSHNLLYHFPKL 289

Query: 302 CMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
               P   W    +   W +    L+ W++G TG+PI+DA MR+L   G+MHNR+RMI A
Sbjct: 290 ----PSENWRSTFDEYPWKEPDGELEKWQKGQTGYPIVDAGMRELWQTGYMHNRVRMIAA 345

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL+K L + WR GE +F   L+D DLA+N+ GWQW A +G D+ PYFR+FNP  QG++F
Sbjct: 346 SFLIKHLRLHWRHGEAWFRDTLVDADLANNSAGWQWVAGSGADAAPYFRVFNPITQGEKF 405

Query: 419 DPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLN 472
           DP G +IR W+PEL  + T+Y+     AP   L K  ++L   YP P+VDH  A    L 
Sbjct: 406 DPDGNYIRQWVPELRELDTRYLFAPFDAPAEALKKARITLGDTYPKPLVDHASAREAALE 465

Query: 473 QYYAAKK 479
            Y A K+
Sbjct: 466 GYEAVKQ 472


>gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
 gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
          Length = 475

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 164/485 (33%), Positives = 265/485 (54%), Gaps = 40/485 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW+R D R+ DN AL+ A    +  V+ V+I   + + +  + +    +++ +L   + 
Sbjct: 6   IVWIRKDFRLVDNPALFHAA--KEGMVVPVYIH--DDYEESSMGSASKWWLHHALNDFKT 61

Query: 71  SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           S+ + +G +    Q  N  D ++ L     +     +++N +YE + ++RDK L+     
Sbjct: 62  SIKKIEGTLIV--QKGNPKDVLQKL---LHETNAQDIYWNSRYEPHALKRDKELQAFFSE 116

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--------SLPVP 180
           + I  ++F+  +L  P  I       YKV+T + KA  ++ V + ++        S PV 
Sbjct: 117 QQINIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKPVE 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           ++ ++      +IP  +D   + I   +   E+ A+ + + F K K+ +Y + RD PA  
Sbjct: 177 SLSVSDLDLLPSIP--WD---ETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEA 231

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-----WLNELIWREFYRHLM 295
             S LSPYL+ G LS R  ++ L+ +      K  S AF      ++ +LIWR+F   L+
Sbjct: 232 LNSFLSPYLATGQLSARVLYHYLRTK----AEKVGSDAFEQQAEMFIRQLIWRDFAYQLL 287

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +P     ++ +W   +  LQAWK G TG+P++DA MR+L   G+MHNR+RM
Sbjct: 288 YHFPHTTT-EPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRM 346

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFLVK LL+ W+ G  +F   L+D DLA+N  GWQW A +G D+ PYFRIFNP  Q 
Sbjct: 347 VAASFLVKHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQS 406

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FD +G +I+ WLPEL ++P+ YIH    AP   L+K +++LN  YP PIVDHK A   
Sbjct: 407 EKFDKEGEYIKKWLPELKDIPSSYIHKPWEAPADVLEKANVTLNKTYPAPIVDHKAARER 466

Query: 470 TLNQY 474
            L  Y
Sbjct: 467 ALEHY 471


>gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
           neptunium ATCC 15444]
          Length = 485

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 169/500 (33%), Positives = 256/500 (51%), Gaps = 44/500 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++ S  ++W R DLR+TDN AL AA  NS   +I V++      R+ G  A +     AS
Sbjct: 2   SSASPAILWFREDLRLTDNPALNAAV-NSGRPLICVYL------RETGAGAPR-EMGGAS 53

Query: 65  LLQVQKSLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              + KSL+  G   +            + + + +   +     +F+NR+Y + E   D 
Sbjct: 54  RWWLNKSLASLGASLEAIGGKLTLRTGPAEKIIPALVEETGAAAVFWNRRYGLPERETDA 113

Query: 122 LLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---L 177
            ++K L+ + V C+SF+  +L+ P  +   +   YKV+TPF +AL     QA  +    +
Sbjct: 114 AIKKTLKDNGVECQSFNGRLLMEPWDLKTGSGGWYKVFTPFWRAL-----QAQYKPPAFI 168

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
           P P           N+  +  +P +      I   +  GE  A   L  F    V  YV 
Sbjct: 169 PSPKKIAGASAETENLKDWGLHPEKPDWSGGIAAAWEPGEVGAQKRLDAFLDGPVSDYVG 228

Query: 233 QRDIPAIQ-GTSQLSPYLSIGVLSPRQCWN----RLKEEFVDLLIKPKSGAFSWLNELIW 287
            R++P +  GTS+LSP+L  G + P Q W     RL+ +  D     +  A  +L+E+ W
Sbjct: 229 TRNLPGVSTGTSRLSPHLRFGEIGPAQIWRAVRARLEAQQAD-----EDSARVFLSEIAW 283

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF   L+ + P++   + +     ++ W KD     AW +G TG+PI+DA MR+L   G
Sbjct: 284 REFSYTLLYYNPALAT-ENYNSNFNQMAWRKDDSGFAAWSRGQTGYPIVDAGMRELWHTG 342

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNR+RMI ASFL K LL+ W+ GE++F   L+D D A+N   WQW A +G D+ PYFR
Sbjct: 343 WMHNRVRMIVASFLTKHLLLPWQQGEQWFWDTLVDADPAANPASWQWTAGSGADAAPYFR 402

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-------LSLNYPLPI 460
           +FNP  QG++FD  G ++RHW PEL  +P +Y+HAP    D          L  +YP PI
Sbjct: 403 VFNPISQGQKFDEDGAYVRHWCPELAGLPDKYLHAPFE-ADAQTLKRARVMLGTDYPEPI 461

Query: 461 VDHKKACHHTLNQYYAAKKQ 480
           +DH       L+ Y A K++
Sbjct: 462 IDHPVGRQRALDAYKAMKEE 481


>gi|239994036|ref|ZP_04714560.1| DNA photolyase [Alteromonas macleodii ATCC 27126]
          Length = 467

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 170/486 (34%), Positives = 256/486 (52%), Gaps = 37/486 (7%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ DN AL AAC       I ++  T    R+ G +++   +++ SL  + K 
Sbjct: 1   MWFRQDLRVKDNPALNAACDMGKIVPIYIYDDTAPNGREPGGASKW--WLHHSLSSLNKR 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHR 130
           L+    +F+        D    +           +F+NR YE  ++ RDK ++K L +H 
Sbjct: 59  LNGHLQIFK-------GDPQTLIPKLMKSFNAKGIFWNRCYEPWQINRDKTIKKTLIEHE 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-VPAIRLT---- 185
               S + S+L  P  +L      Y+V+TP+ K   +  +Q +    P  P  R+T    
Sbjct: 112 YEAHSCNGSLLWEPMKVLKKDGTPYRVFTPYYK---KGCLQVEEPRYPKAPPARITYADV 168

Query: 186 -----GPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                G  +   +P   +D     I+  +  GE  A   L  F +     Y + RDIP+ 
Sbjct: 169 DNDSDGLTSLDLLPSINWD---ATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSA 225

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS+LSP+L  G +SP Q W  +K++F +   K      ++L+EL WREF  +L+  +P
Sbjct: 226 NGTSRLSPHLHFGEVSPNQVWYAIKDKFGNSEDK---SIETYLSELGWREFSYYLLFHFP 282

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           ++   K F    +K  W  D+  L+AW++G TG PI+DA MR+L   G+MHNR+RMI  S
Sbjct: 283 TLP-NKNFNEKFDKFPWRTDAKALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGS 341

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK+LL+ W  GE +F   LLD DLASN+  WQW A +G D+ PYFRIFNP +QG++FD
Sbjct: 342 FLVKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFD 401

Query: 420 PQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQ 473
            +G ++R + PEL  +  +YIH    AP + L    + L   YP PIVD K +    L+ 
Sbjct: 402 KKGNYVRKYCPELKKLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDA 461

Query: 474 YYAAKK 479
           +   K+
Sbjct: 462 FQTLKE 467


>gi|291277653|ref|YP_003495244.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia
           amblyommii]
 gi|289657737|gb|ADD14598.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia amblyommii
           AaR/Sc]
          Length = 478

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 245/470 (52%), Gaps = 32/470 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++WLR +LR+ DN++  AA  NSD K++ +FI  T    R      R+  F+  +L  + 
Sbjct: 6   IIWLRRNLRLHDNRSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLCLIN 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L +              + IE +       ++  ++ +  YE + + RDK +++ L  
Sbjct: 65  DELKKLKGKLLVFH----GNPIEIISKLTAILKIENIYADEDYEPSNIARDKTVQELLGS 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTP----FRKALIQNLVQADLRSLPVPAIRLT 185
                 + D +L+ P  +L    + YKVYTP    FRK +  N V A  + L   +  L 
Sbjct: 121 NCTLNLYCDHLLIKPARVLTKDNKPYKVYTPYMQAFRKFIANNGVIAHNKLLMNYSYNLE 180

Query: 186 GPV-TPSNIP-RFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQ 233
           G +  P +I  +  D    A + +  IG           +NA +IL KF   ++ +Y   
Sbjct: 181 GKLYIPQDIDLKTIDLNVGASEALKQIGYVYKEDELWQPRNAQNILNKFIANRINFYKTD 240

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD     GTS +SPYL  G++S R+C+ +      +  + P  G  +W+NELIWREFY  
Sbjct: 241 RDFLYRNGTSTISPYLRFGLISIRECYRKA----FNASLNP--GTVTWINELIWREFYAT 294

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P+    +    +  KI WN        +    TG+PIIDAA++QL + GWMHNR 
Sbjct: 295 ILYHFPNTVNEEFLEKYRNKIPWNNKKEYFNKFINAETGYPIIDAAVKQLISDGWMHNRS 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASF  K+LL+DWR GEE+F   L+D +LASN GGWQWA+S G D+ PYFRIFNP  
Sbjct: 355 RMIVASFFTKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFNPYT 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           QG+ FDP   +I+ +LP L    T  IH  + +     +  NYP P+VD+
Sbjct: 415 QGQHFDPDAEYIKKYLPTLKKAQTHIIHNINFY----KMYDNYPKPMVDY 460


>gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 474

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 162/484 (33%), Positives = 253/484 (52%), Gaps = 30/484 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V +VW+R DLRI D+ AL AA       VI ++I +P++     +      +++ SL  +
Sbjct: 4   VTIVWMRQDLRIEDHPALDAAAQR--GSVIPLYIWSPQEEGHWPLGGASKWWLHHSLKSL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +  L   G+     +  + D     L     +     +F++R+YE   ++RD  ++ +L 
Sbjct: 62  ENDLRSLGLPLIIRKGKSLDC----LRDVIKETNADAVFWSRRYEPYAIKRDIQVKSKLS 117

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  ++ KSF  +VL  P SI N   + ++V+T F K  +    +  L  L  P I + G 
Sbjct: 118 EEGLLAKSFPGNVLYEPWSIQNKQGKPFQVFTFFWKNCLAK--EQPLAPLSAP-IGVKGK 174

Query: 188 VTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           +   +     D          + I   +  G   A   L  F +   + Y E+RD P + 
Sbjct: 175 IVEVDSLHIEDLKLLPTTSWDEGIAHTWKPGSVYAKEFLSYFLEGGAHDYNERRDRPDLP 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S+LSPYL  G +S R  W+ + ++      +P      +L +L WR+F  HL+  +P 
Sbjct: 235 GVSRLSPYLHFGEISVRMVWDEIVKKLGFQEAEP------YLRQLGWRDFAYHLLYHFPK 288

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P         W ++  LL+ W++G TG+P +DA MRQL   GWMHNR RM+  SF
Sbjct: 289 TPE-EPLRQEFAYFPWKENKKLLKVWQKGMTGYPFVDAGMRQLWMTGWMHNRARMVVGSF 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDLL+ W+ G ++F   L+D DLA+N  GWQW A +G D+ PYFRIFNP  QG++FDP
Sbjct: 348 LVKDLLLPWQTGAQWFWDTLVDADLANNTLGWQWVAGSGADAAPYFRIFNPITQGEKFDP 407

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
           +G+++R W+PE+ N+P ++IH    AP   L+K  + L   YP PIV+H +A    L  +
Sbjct: 408 EGSYVRKWVPEIANLPDKWIHKPWEAPLDVLEKAGVKLGQTYPYPIVNHDEARLAALEAF 467

Query: 475 YAAK 478
              K
Sbjct: 468 EEIK 471


>gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
 gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
          Length = 479

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 171/486 (35%), Positives = 248/486 (51%), Gaps = 26/486 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN  L AA   S +KV+ VF   P    +  ++  +  ++  SL ++Q+
Sbjct: 6   LFWHRRDLRIADNIGLAAARQQS-SKVVGVFCLDPNILERDDVAPARVTYMIGSLQELQQ 64

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
              Q G  +   H      D ++ +           +F+N   E     RD+ +   L+ 
Sbjct: 65  RYVQAGSQLLILH-----GDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAILDILKD 119

Query: 130 RVI--CKSFDDSVLLPPGSILNHALQMYKVYTPF--------RKALIQNLVQADLRSLPV 179
           + I       D +L  P  I + +   Y VYTPF        +   ++ L  A+   L  
Sbjct: 120 KGIQFLTHKWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLQNAE--GLTE 177

Query: 180 PAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
               L        +P   D  F    D +   GE  A   L +F  + +  Y EQR+ PA
Sbjct: 178 SEQELAQKAGVKTLPTAKDLGFFWDADLIIAPGEAAAQAKLEEFTAKAITEYQEQRNFPA 237

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAF 297
           + GTSQLS  L  GV+  R  W    E   +   +  S A  +W  EL WREFY+H M  
Sbjct: 238 VDGTSQLSAALKFGVIGIRTVWQATLEALENSRSEEASAAIRTWQQELAWREFYQHAMYN 297

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +  G  +    +   W  +    QAW++G TG+PI+DAAMRQ+N  GWMHNR RMI 
Sbjct: 298 FPELADGA-YRETFKNFPWETNEEHFQAWREGKTGYPIVDAAMRQMNESGWMHNRCRMIV 356

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDLL++ ++GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q ++
Sbjct: 357 ASFLTKDLLINPQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQK 415

Query: 418 FDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           FDP   +IR W+PEL ++ T+Y +    + L+++  ++ Y  PIVDH+K       +Y  
Sbjct: 416 FDPDAEYIRRWVPELRSMDTEYLVTGKITPLERH--AVGYVKPIVDHQKQQQLFKQRYQQ 473

Query: 477 AKKQSL 482
            K  SL
Sbjct: 474 QKATSL 479


>gi|257053940|ref|YP_003131773.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940]
 gi|256692703|gb|ACV13040.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940]
          Length = 470

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 243/479 (50%), Gaps = 19/479 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYA-ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M +H  W R DLR+ DN+AL       +D +V+ VF+  P    +H   AR    + A +
Sbjct: 1   MRIH--WHRRDLRLADNRALAGDGIETNDEQVLGVFVFDPAVL-EHAGPARVVALLDA-V 56

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++++  ++G            D +  L +         + +NR+Y      RD  +  
Sbjct: 57  AALREAYRERGSDLVLASG----DPVAELPTLATTYGAELVTWNREYSPLARDRDAAVRA 112

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    I + +  D+VL  PG+I  +    Y+V+T F +        A +   P  A  L
Sbjct: 113 SLDDAGIGRDAVHDAVLHEPGTIRTNDGDPYQVFTYFWRKWRDRRKSAPI--APPDADSL 170

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                 + +P + D   +      P +    A   L  FC   +Y Y ++RD PA   TS
Sbjct: 171 GDVTDDTPVPTWADLDVEEPTASIPGVTPAAARERLDSFCAGDIYRYEDRRDYPAEDCTS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           +LS +L  G +  R  +   +           ++    + ++L WREFY  ++ F PSV 
Sbjct: 231 RLSHHLKYGTIGIRAVYAATERACERGETADDRASVREFQSQLAWREFYTQVLWFNPSVV 290

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + F  +   IEW  D   LQAWK G TG+PI+DA MRQL T  +MHNR+RMI ASFL 
Sbjct: 291 T-ENFKSYENPIEWRTDPEGLQAWKDGETGYPIVDAGMRQLETAAYMHNRVRMIVASFLT 349

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR G ++F ++L+D D A++NGGWQWAASTG D+ PYFRIFNP  QG+R+DP  
Sbjct: 350 KDLLIDWREGYDWFRAKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDA 409

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYPLPIVDHKKACHHTLNQYYAAK 478
            +IR ++PEL+ VP   IH+ H  LD     +   +YP PIVDH       L  +  A+
Sbjct: 410 AYIREYVPELDGVPADVIHSWHE-LDPGAREMHAPDYPAPIVDHADRREQALAMFERAR 467


>gi|91204921|ref|YP_537276.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C]
 gi|91068465|gb|ABE04187.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C]
          Length = 475

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 243/470 (51%), Gaps = 32/470 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQVQ 69
           +VWLR +LR+ DNK+  AA  NSD K++ +FI  T    R      R+  F+  +L  + 
Sbjct: 6   IVWLRRNLRLHDNKSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLCLIN 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L +            +   ++ +       ++  ++ +  YE N + RDK +++ L  
Sbjct: 65  DELKKLKGKLLVF----YGKPLDIIPKLAATLKIENIYADEDYEPNNIERDKKVQELLGS 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTP----FRKALIQNLVQADLRSLPVPAIRLT 185
                 + D +L+ P  +L    + YKVYTP    FRK +  N   +  + L   +  L 
Sbjct: 121 NCTLNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFRKFIADNGSISHNKLLTNYSYNLD 180

Query: 186 GPV-TPSNIP-RFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQ 233
           G + TP +I  +  D      + +  IG           +NA ++L KF   ++  Y   
Sbjct: 181 GKLYTPQDIELKTIDLNIGKSEALKQIGYVYKEDELWQPKNAQNVLDKFITRRINRYKID 240

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +D   + GTS +SPYL  G++S R+C+ +              G+ +W+NELIWREFY  
Sbjct: 241 QDFLYLDGTSTISPYLRFGLVSIRECYRKA------FNAASNPGSITWINELIWREFYAT 294

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P+    +    +  KI WN        +    TG+PIIDAA++QL   GWMHNR 
Sbjct: 295 ILYHFPNTVNEEFLEKYKNKIPWNNKKEYFDKFINAETGYPIIDAAVKQLVGDGWMHNRA 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASF  K+LL+DWR GEE+F   L+D +LASN GGWQWA+S G D+ PYFRIFNP  
Sbjct: 355 RMIVASFFSKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFNPYT 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           QGK FDP   +I+ +LP L NV    IH  +S    + +  NYP PIVD+
Sbjct: 415 QGKNFDPDAEYIKKYLPILKNVQPHIIHNINS----HKMYDNYPKPIVDY 460


>gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           H3081.97]
 gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           H3081.97]
          Length = 476

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 160/485 (32%), Positives = 261/485 (53%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +   + V+  T        I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGEVLPLYVYDET------FSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNTMEEILSLIE----QLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            + CK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E+   L  K  +   S++ +LIWREF  +L+  YP 
Sbjct: 234 LAPYLSFGQISVKLMYHYLINKSNEKQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 290 FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 410 NGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|229030832|ref|ZP_04186854.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
 gi|228730481|gb|EEL81439.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
          Length = 476

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 165/483 (34%), Positives = 256/483 (53%), Gaps = 28/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++    Q     I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +  ++    Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNTQEEILSLIE----QLGITAVYWNICYDPERLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + I+ M+   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSKLHLLPTIPWTSHIESMWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSMLA 235

Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           PYLS G +S R  +    N+  E    L  K  +   S++ + IWREF  +L+  YP   
Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVN---SFIRQFIWREFSYYLLYHYP-FT 291

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           + KP     E   WN +  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLV
Sbjct: 292 VYKPLNKSFEHFPWNNEEELLTVWQKGDTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDG 411

Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476
            +IR W+PEL ++P +YIH    AP   L + ++ L   YPLPIVDHK A    L  Y +
Sbjct: 412 EYIRKWVPELRDMPNKYIHKPWEAPEHILQEANIQLGHTYPLPIVDHKAARERALCAYKS 471

Query: 477 AKK 479
            KK
Sbjct: 472 MKK 474


>gi|146412189|ref|XP_001482066.1| hypothetical protein PGUG_05829 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 607

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 159/486 (32%), Positives = 255/486 (52%), Gaps = 25/486 (5%)

Query: 17  DLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
           D R +DN  L AA       +  ++ +++   +    HG+S  Q  +   SL  +++ L+
Sbjct: 122 DFRQSDNTGLNAASRMAAKENLPLVCLYVLCRDDLFAHGVSGFQLEYRLRSLELLREELA 181

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRLQHRVI 132
           QK I   +       + +  +     Q +++ LF N +YE++E+RR   L ++ L+  + 
Sbjct: 182 QKNIPLVFLNVDERKEVVPIVKEKAQQLKISHLFANIEYEVDELRRYTNLCKELLKADIS 241

Query: 133 CKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNL--------VQA-------DLRS 176
            +  +D+ L  PG+I+  +    + V+TP+ +A   +L        V+A       + R 
Sbjct: 242 FQPHNDTTLAVPGTIVTKSKGTQFSVFTPWYRAWCAHLNKMKDPFQVRAKPEANSDEFRQ 301

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRD 235
                  L  P  P    +  +   +A +     GE  A   L+ F    ++  Y   R+
Sbjct: 302 RNSHLFDLKIPQAPPG-KQLTEKQKEAFEKYHKPGENAAWDDLQDFITSGRIKRYNVDRN 360

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            P++ G S++S + + G ++ R     L   + +  +     GA  W  ++ WR+FYRH+
Sbjct: 361 DPSVNGVSRMSVHFASGTINARTVIRSLLDHKLLRTIDSGNDGAREWARQVAWRDFYRHV 420

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +CM KPFI   ++++W  +S   + W QG TG+PI+DAAMRQL  +G++HNR+R
Sbjct: 421 LCNWPHICMFKPFISNMDEVKWEYNSDHFERWCQGKTGYPIVDAAMRQLLEMGYLHNRVR 480

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL K L++DWR GE YF+  L DGD  SNNGGW +++S G D  PYFRIFNP  Q
Sbjct: 481 MVVASFLSKHLMIDWREGERYFLENLADGDFPSNNGGWGFSSSVGVDPQPYFRIFNPWTQ 540

Query: 415 GKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLN 472
            ++FD +G +IR WLPEL  +   + IH P+    +     N YP PIVDHK A    L 
Sbjct: 541 AEKFDKKGDYIRKWLPELREIQDVKGIHNPYENGYRQIAEKNGYPPPIVDHKTARERALE 600

Query: 473 QYYAAK 478
           +Y  AK
Sbjct: 601 RYKEAK 606


>gi|302877366|ref|YP_003845930.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
           ES-2]
 gi|302580155|gb|ADL54166.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
           ES-2]
          Length = 473

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 174/479 (36%), Positives = 238/479 (49%), Gaps = 27/479 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ ALY A  NS A        T           R+  FI+ SL ++  
Sbjct: 8   ICWFRRDLRLDDHAALYHALKNSRAVHCVFVFDTVILDALSDKHDRRVEFIWHSLYELNA 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L Q G   Q        + +E +     +  V  +F NR YE   VRRD  +   L   
Sbjct: 68  LLQQHGSTLQILH----GNPVELIPHLARELEVQAVFCNRDYEPLAVRRDAAVAASLSD- 122

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV----PAIRLTG 186
           +    + D V+     IL      Y V+TP++ A ++ L    LR+ PV     ++  + 
Sbjct: 123 IDFHQYKDQVIFEQSEILTGGGTPYSVFTPYKNAWLKKLDDFYLRAYPVERYFSSLAKSA 182

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P     +      P +      P G   A  +   F   ++  Y E R+ PA++G S LS
Sbjct: 183 PQAFPALALLGFLPGKLNVQALPTGASGAATLFENFVS-RIDAYGEARNFPAVKGVSYLS 241

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G +S R+        F        +G   WL+ELIWR+FY+  +  +P +  G  
Sbjct: 242 VHLRFGTISIRRV-----ASFA--YYSGGAGGQVWLSELIWRDFYQMQLHHHPQLGQGAA 294

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F      I +  +     AW +  TG+P+IDAAMRQLN  G+MHNRLRM+ ASFLVKDL 
Sbjct: 295 FKAQFNDIRFPNEEGKFAAWCEARTGYPLIDAAMRQLNGSGYMHNRLRMVVASFLVKDLH 354

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YF   L+D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q ++FD  G FIR
Sbjct: 355 IDWRWGERYFAQHLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDGAGRFIR 414

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTLNQYYAA 477
            ++PEL   P ++IHAP  WL            +   YPLP+VDH  A   TL  + AA
Sbjct: 415 RYVPELAGCPDKWIHAP--WLMPAAEQQRCGVLVGKTYPLPVVDHAVARITTLALFKAA 471


>gi|298490155|ref|YP_003720332.1| deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
 gi|298232073|gb|ADI63209.1| Deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
          Length = 479

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 178/497 (35%), Positives = 260/497 (52%), Gaps = 49/497 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S +K++ VF   P       ++  +  ++   L  ++K
Sbjct: 6   LFWHRRDLRISDNTGLIAAREQS-SKIVGVFCLDPCILNSDDVAPARIKYMMGCLQSLEK 64

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-----LL 123
             +Q G  +V  Y      D+ I  + +     +V  +F+N   E     RD      L 
Sbjct: 65  QYTQAGSQLVILY------DNPIAVIPALAEALKVKAVFWNWDVEPYAQIRDNDVICVLR 118

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           EK +Q   + +++D  +L  P  IL+ +   Y VYTPF K        +  ++ PV  ++
Sbjct: 119 EKGIQ--TLNQNWD-QLLHSPDEILSGSKTPYTVYTPFWKNW-----SSKPKANPVATLK 170

Query: 184 LTGPVTPS-----------NIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKV 227
            +  +T +           N+P   D  F       I+P    GE  A   L  F    +
Sbjct: 171 NSEGLTAAEQEIAKQSGAINLPSAQDLGFIWDGELIIEP----GEAVAKARLETFTTSAI 226

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELI 286
             Y EQR+ P + GTSQLS  L  GV+  R  W   KE       +  + +  +W  E  
Sbjct: 227 NEYQEQRNFPTVHGTSQLSAALKFGVIGIRTIWQATKELLETSNSEEVTASIRTWQQEFA 286

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREFY+H M  +P++  G  +    +K  W  +    QAW +G TG+PI+DAAMRQLN I
Sbjct: 287 WREFYQHAMYHFPALANG-AYRDIFKKFPWQNNQAHFQAWCEGKTGYPIVDAAMRQLNEI 345

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR RMI ASFL KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G DS P  
Sbjct: 346 GWMHNRCRMIVASFLTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDSKP-L 404

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKK 465
           RIFNP  Q ++FD  G +IR W+ EL +V T+Y+ + + + L++   ++ YP PIVDHKK
Sbjct: 405 RIFNPASQAQKFDIDGEYIRQWVRELKSVDTEYLVSGNITPLERR--AVGYPTPIVDHKK 462

Query: 466 ACHHTLNQYYAAKKQSL 482
                  Q Y  +K  +
Sbjct: 463 Q-QGLFKQLYQEQKTGM 478


>gi|110668379|ref|YP_658190.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
 gi|109626126|emb|CAJ52578.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
          Length = 478

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 169/490 (34%), Positives = 244/490 (49%), Gaps = 29/490 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACH--------NSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + L W R+DLR  DN+ L  A          ++D  +I VFI         G +  Q  +
Sbjct: 1   MQLYWHRSDLRGVDNRGLAEAASAVSPDLLPDADG-IIPVFIFDDNALEHDGNARVQ--Y 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  S+ +++     +       +     D +  L        V ++ +NR+Y      RD
Sbjct: 58  MLESIAELRSWYRDRDSDLLIARG----DPVSILPELASTHDVDRVVWNREYSGFAQSRD 113

Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLR 175
           + +   L +H +   S  DS+   PGSI  +  + Y VYT F    R       + A   
Sbjct: 114 QQVADALTEHDIAHCSVRDSIFFEPGSITTNKGEPYSVYTYFWKKWRDREKNAPIDAPDA 173

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            + VP   + G   P+     F+ P   I P    G   A + L  FC + +Y Y + RD
Sbjct: 174 DMFVPDEGI-GDSLPTIDSLGFEEPTADIQPA---GTNAARNRLSDFCADGIYRYDDDRD 229

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQC-WNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRH 293
            P+    S+LS  LS G +  R      +    VD +   ++ +   + ++L WREFY H
Sbjct: 230 YPSRDAVSRLSADLSFGTIGVRDVHAATVAAAEVDGITDAEAESVEEFQSQLAWREFYTH 289

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++ F P V   + +  +   I+W  D   LQAWK G TG+PI+DA MRQL +  +MHNRL
Sbjct: 290 VLYFNPEVVT-ENYKSYENGIQWRDDPAALQAWKDGETGYPIVDAGMRQLKSEAYMHNRL 348

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL KDLL+DWR G  +F   L D ++A+NNGGWQWAASTG D+ PYFRIFNP  
Sbjct: 349 RMIVASFLTKDLLIDWREGYGHFRQYLADHNIANNNGGWQWAASTGTDAQPYFRIFNPMT 408

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTL 471
           QG+R+DP   +I+ ++PEL  VP   IH  H  S  ++  L  +YP PIVDH K     L
Sbjct: 409 QGERYDPDAEYIKQYVPELREVPADTIHEWHELSPTERARLDTDYPAPIVDHSKQREKAL 468

Query: 472 NQYYAAKKQS 481
             +  A+  +
Sbjct: 469 EMFETARGDA 478


>gi|229151347|ref|ZP_04279551.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
 gi|228632137|gb|EEK88762.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
          Length = 476

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 168/490 (34%), Positives = 254/490 (51%), Gaps = 42/490 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I    Q     I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QDETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++       P P  R+     
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPISRVQSIKW 168

Query: 190 PSNIPRFFDYPFQAIDPMFP----------IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            S++P         + P  P            E+ A    +KF   K+  Y E RD P  
Sbjct: 169 GSSLPTSLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQ 228

Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              S L+PYLS   +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+
Sbjct: 229 NVHSMLAPYLSFSQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP   + KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM
Sbjct: 286 YHYP-FTVYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG
Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FD  G +IR W+PEL ++P +YIH    AP   L K ++ L   YP PIVDHK A   
Sbjct: 405 EKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPYPIVDHKAARER 464

Query: 470 TLNQYYAAKK 479
            L  Y + K+
Sbjct: 465 ALCAYKSMKE 474


>gi|30021247|ref|NP_832878.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
 gi|229130975|ref|ZP_04259903.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
 gi|29896801|gb|AAP10079.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
 gi|228652473|gb|EEL08383.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
          Length = 476

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 165/490 (33%), Positives = 257/490 (52%), Gaps = 42/490 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I    Q     I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QDETFSIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +    ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++       P P  R+     
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPFSRVQSIKW 168

Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +++P         + P+ P            E+ A    +KF   K+  Y E RD P  
Sbjct: 169 GNSLPASLSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ 228

Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              S L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+
Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP   + KP     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM
Sbjct: 286 YHYP-FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG
Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FD  G +IR W+PEL ++P +YIH    AP   L K+++ L   YP PIVDHK A   
Sbjct: 405 EKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARER 464

Query: 470 TLNQYYAAKK 479
            L  Y + K+
Sbjct: 465 ALCAYKSMKE 474


>gi|325110039|ref|YP_004271107.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
           DSM 5305]
 gi|324970307|gb|ADY61085.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
           DSM 5305]
          Length = 502

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 180/498 (36%), Positives = 261/498 (52%), Gaps = 53/498 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQV 68
           LVWLR DLR+ DN ALYAA  N+   VI V++     + W   G +   S +++ SL  +
Sbjct: 28  LVWLRQDLRLRDNPALYAAA-NTGRSVIVVYLLPNRNDDWFPGGAA---SWWLHHSLDAL 83

Query: 69  QKSLSQKGIVFQYHQ----CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLL 123
             +L ++     +HQ      +    +  L   C   +   +F+NR YE  +  RD K  
Sbjct: 84  TTNLHKR-----HHQLILRSGSAATEMTRLAEDC---KAAAVFWNRCYEPADRERDEKTA 135

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +K  Q     +SF  S+L+ P ++       Y+V+TPF KA    +  A    LP P   
Sbjct: 136 DKLAQAGYQVRSFPGSLLIEPWTLSTKQGDPYQVFTPFWKAARSRVEFAS--PLPAPE-S 192

Query: 184 LTGPVTPSNIPRFFDY---PFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDI 236
           L  P    +     D+   P       FP     GE  A    +KF  + +  Y  +RD+
Sbjct: 193 LKTPDQWPDSEELADWKLLPTLDWADEFPERWKPGEDAAHAAWQKFLDDNIAEYGTERDV 252

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWRE 289
           P+  GTS+LSP+L  G +SPRQ    +  E V+ + + ++   S       +L+E+ WRE
Sbjct: 253 PSHHGTSRLSPHLHYGEISPRQ----IYAEAVEKMNRKQTATESFEKNVNVYLSEIGWRE 308

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           F  H++  +P      P  P  EK     W      L+AW+QG TG+PI+DA MR+L   
Sbjct: 309 FGYHVLYHFPHT----PENPLREKFADFNWETKKSWLKAWQQGQTGYPIVDAGMRELWRT 364

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+RMI ASFL KDL + W  G ++F   L+D DLA+N  GWQWA+  G D+ PYF
Sbjct: 365 GWMHNRVRMIVASFLTKDLRIHWLEGSKWFWDTLVDADLANNTLGWQWASGCGADAAPYF 424

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI 460
           R+FNPT Q ++FDP+G ++R W PEL ++P +Y+H    AP S L+K  + L  +YP PI
Sbjct: 425 RVFNPTRQSEKFDPKGNYLRRWCPELADLPDKYLHCPADAPESVLNKAGVRLGKDYPEPI 484

Query: 461 VDHKKACHHTLNQYYAAK 478
           VDH +     L ++   K
Sbjct: 485 VDHAEQRDAALAEWEKVK 502


>gi|83594235|ref|YP_427987.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
           ATCC 11170]
 gi|83577149|gb|ABC23700.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
           ATCC 11170]
          Length = 478

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 171/480 (35%), Positives = 244/480 (50%), Gaps = 44/480 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67
           LVW R+DLR+ DN AL AA  +S A VI  ++   +T +  R  G + R   ++  SL  
Sbjct: 6   LVWFRDDLRLADNPALCAAL-DSGAPVIPFYLLDDSTSDGHRPLGGATRW--WLGRSLTS 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +S++Q+G      +     +++  +     +     LF NR Y ++ +R D L     
Sbjct: 63  LAESIAQRGGRLVLRRG----EALSAVPELAAETDAAALFANRLYGMDSLRDDDLFMVLR 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  + FD  +L  P ++     + ++V+TPF K L   L       LP+ A     P
Sbjct: 119 VAGLTVRLFDSGLLHRPEAVTTKTGRPFRVFTPFWKTLSATLDPG----LPLAAPDSFPP 174

Query: 188 V--TPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           V   P       D+  +   P         +  GE  A   L  F    V  Y   RD P
Sbjct: 175 VDDPPPASDSLADWSLEPTTPDWAGGLRDTWQPGEAGAQARLEAFFNGPVADYASGRDRP 234

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
               TS+LSP+L  G +SPRQ W   +         P  G  ++L EL WREF  HL+  
Sbjct: 235 DKPLTSKLSPHLRFGEISPRQVWTAARHH------PPGGGMDAFLRELGWREFCHHLLFQ 288

Query: 298 YPSVC---MGKPFI--PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            P++    +   F+  PWTE  E       L AW+ G TG+PI+DA MR+L   GWMHNR
Sbjct: 289 APTMAEEPLKAEFLAFPWTEAKEIGP---ALAAWQSGETGYPIVDAGMRELWHTGWMHNR 345

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI ASFL+KDLL+ W+ GE +F   L+D   A+N  GWQW A  G D+ P+FRIFNP 
Sbjct: 346 VRMIAASFLIKDLLIPWQHGERWFWDTLVDACPANNAAGWQWVAGCGADAAPFFRIFNPV 405

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKA 466
            QG+RFDP+G ++R WLPEL ++P+  IH    AP   L +  ++L   YP P++DH  A
Sbjct: 406 TQGERFDPEGAYVRRWLPELADLPSSLIHRPWEAPPLILRQAGVTLGKTYPPPLIDHAHA 465


>gi|157692159|ref|YP_001486621.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032]
 gi|157680917|gb|ABV62061.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032]
          Length = 466

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/389 (38%), Positives = 218/389 (56%), Gaps = 16/389 (4%)

Query: 103 VTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF 161
           +  +F+N        RRDK +   L+ + I   ++ D+ L     IL      Y+V+TP+
Sbjct: 83  INAVFFNEDEVGIGQRRDKQVTDFLEKKGIHVSTWQDTHLHGAQDILKADGSHYQVFTPY 142

Query: 162 ----RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
               RK   Q +++ D        +     ++     +  D           IG + A++
Sbjct: 143 YQSWRKQEKQPVIKVDKSFFSSGHMICDESLSQKGNEKLRDLIKGCSRKFDQIGTEKAMN 202

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
            L++F ++++  Y E+RDIP++ GTS+LS +L  G +S R  ++ + EE     +    G
Sbjct: 203 TLQQFIQKRLTRYQEKRDIPSVFGTSKLSRFLKTGTISIRTIFHAIYEE----ALYEDEG 258

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
             +++ EL WR+FY  + A YP +   K      + + WN D  L +AW +G TGFP++D
Sbjct: 259 RETFIKELAWRDFYHMIYAHYPEM-KEKEINSAFQGMRWNDDETLFEAWCKGETGFPLVD 317

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           A MRQLN  GWMHNRLRM+TASFL KD L+DWR GE YF  +L+D D ASN GG+QWAAS
Sbjct: 318 AGMRQLNEEGWMHNRLRMVTASFLTKDYLIDWRKGEAYFAKKLVDYDEASNIGGFQWAAS 377

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKN-----D 451
            G D+VPYFRIFNP  Q KRFDP G FIR ++PEL ++  ++IH P    +D+       
Sbjct: 378 VGTDAVPYFRIFNPITQSKRFDPSGEFIRKYVPELEHIDEKWIHEPSKMPIDEQLKSGCV 437

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           L   YPLP VDH++     ++ +  AK+Q
Sbjct: 438 LGDTYPLPTVDHQERRKKAISLFEEAKQQ 466


>gi|254468959|ref|ZP_05082365.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
 gi|207087769|gb|EDZ65052.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
          Length = 429

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 157/418 (37%), Positives = 229/418 (54%), Gaps = 38/418 (9%)

Query: 60  FIYASLLQVQKSLSQKG----IVFQ--YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           FIY  L  ++++L + G    I+F    H+     +SI              +F NR YE
Sbjct: 14  FIYQVLQDIKQTLKKYGSDIWILFGDPVHEIPKLAESI----------NANAIFVNRDYE 63

Query: 114 INEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              V RD  ++K+L       +SF D VL     I+      Y V++P+R   ++ L+  
Sbjct: 64  KYGVNRDNDVQKKLSELNKTFQSFKDQVLFEADEIVTKNNTHYSVFSPYRNNHLEKLL-- 121

Query: 173 DLRSLPVPAIRLTG-PVTPSNIPRFF---DYPFQAID-PMFPIG--EQNALHILRKFCKE 225
            +    V + +L        NI +     D  F + +   F I    Q+    + +F K+
Sbjct: 122 -ISGSGVSSYKLDDITFEKFNIDKMLTLDDIGFNSSNISSFQIATTHQDIQKQINEF-KD 179

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           ++ +Y + R+ PAI+G S LS +   G +S R+  N   + +        SG+ SWLNEL
Sbjct: 180 RLEHYDQTRNFPAIKGVSYLSVHNRFGTISIREMANICLQNYA------TSGSKSWLNEL 233

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           IWR+FY  ++  +  V  G  F    + +++  +    ++WKQG TGFPI+DAAMRQLNT
Sbjct: 234 IWRDFYFQIIVNFSHVQDGHSFKLQYDNLQYENNESFFESWKQGMTGFPIVDAAMRQLNT 293

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+MHNRLRMI ASFL KDLL+DWR GEEYF  +L+D D ++NNGGWQWAAS G D+ P+
Sbjct: 294 TGYMHNRLRMIVASFLTKDLLIDWRWGEEYFKEKLIDYDFSANNGGWQWAASVGCDAQPW 353

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           FRIFNP +Q ++FD  G FI+ ++PEL+    + IH PH+     D    YP PI+DH
Sbjct: 354 FRIFNPLLQSQKFDSDGKFIKKYVPELSEFDKKNIHEPHAKFTPKD----YPKPIIDH 407


>gi|218904303|ref|YP_002452137.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH820]
 gi|218535120|gb|ACK87518.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH820]
          Length = 476

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 162/483 (33%), Positives = 258/483 (53%), Gaps = 28/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEATQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+H+
Sbjct: 60  QLEALGSTLIIRKGSTQEEIL----SLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 --PSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              S +      P+ + ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP   
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTA 292

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLV
Sbjct: 293 Y-KPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411

Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476
            +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y +
Sbjct: 412 EYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471

Query: 477 AKK 479
            K+
Sbjct: 472 MKE 474


>gi|229046850|ref|ZP_04192484.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
 gi|229110596|ref|ZP_04240162.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
 gi|228672847|gb|EEL28125.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
 gi|228724483|gb|EEL75806.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
          Length = 476

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 165/490 (33%), Positives = 256/490 (52%), Gaps = 42/490 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I    Q     I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QEETFSIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +    ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++       P P  R+     
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPFSRVQSIKW 168

Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +++P         + P  P            E+ A    +KF   K+  Y E RD P  
Sbjct: 169 GNSLPASLSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ 228

Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              S L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+
Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP   + KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM
Sbjct: 286 YHYP-FTVYKPLNKSFEHFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG
Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FD  G +IR W+PEL ++P +YI+    AP   L K+++ L   YP PIVDHK A   
Sbjct: 405 EKFDKNGEYIRRWVPELKDIPNKYIYKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARER 464

Query: 470 TLNQYYAAKK 479
            L  Y + K+
Sbjct: 465 ALCAYKSMKE 474


>gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 476

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 164/485 (33%), Positives = 261/485 (53%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++    Q     +      +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDEDFLMGEASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +    ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISK--VQSIKWGSSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + I+ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 ASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP 
Sbjct: 234 LAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 290 FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 410 NGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|49478047|ref|YP_037258.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49329603|gb|AAT60249.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 476

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 162/483 (33%), Positives = 258/483 (53%), Gaps = 28/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+H+
Sbjct: 60  QLEALGSTLIIRKGSTQEEIL----SLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEHK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 --PSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              S +      P+ + ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP   
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTA 292

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLV
Sbjct: 293 Y-KPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411

Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476
            +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y +
Sbjct: 412 EYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471

Query: 477 AKK 479
            K+
Sbjct: 472 MKE 474


>gi|229070649|ref|ZP_04203886.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
 gi|229080332|ref|ZP_04212857.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
 gi|228703001|gb|EEL55462.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
 gi|228712471|gb|EEL64409.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
          Length = 476

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 166/485 (34%), Positives = 260/485 (53%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++    Q     I +    ++  +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLRHAIMDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLKALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISR--VQSIKWGNSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP 
Sbjct: 234 LAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 290 FTVYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K+++ L   YP PIVDHK A    L  Y
Sbjct: 410 NGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAY 469

Query: 475 YAAKK 479
              K+
Sbjct: 470 KNMKE 474


>gi|49185961|ref|YP_029213.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Sterne]
 gi|65320437|ref|ZP_00393396.1| COG0415: Deoxyribodipyrimidine photolyase [Bacillus anthracis str.
           A2012]
 gi|165868433|ref|ZP_02213093.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0488]
 gi|167631730|ref|ZP_02390057.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0442]
 gi|167637299|ref|ZP_02395579.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0193]
 gi|170684891|ref|ZP_02876116.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0465]
 gi|177649852|ref|ZP_02932853.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0174]
 gi|190564773|ref|ZP_03017694.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227814024|ref|YP_002814033.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. CDC 684]
 gi|229603798|ref|YP_002867382.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0248]
 gi|254685712|ref|ZP_05149571.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254723122|ref|ZP_05184910.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A1055]
 gi|254738183|ref|ZP_05195886.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Western North America USA6153]
 gi|254742647|ref|ZP_05200332.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Kruger B]
 gi|254752497|ref|ZP_05204533.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Vollum]
 gi|254761013|ref|ZP_05213037.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Australia 94]
 gi|270000553|ref|NP_845490.2| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Ames]
 gi|49179888|gb|AAT55264.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Sterne]
 gi|164715159|gb|EDR20676.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0488]
 gi|167514806|gb|EDR90172.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0193]
 gi|167532028|gb|EDR94664.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0442]
 gi|170671151|gb|EDT21889.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0465]
 gi|172083804|gb|EDT68863.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0174]
 gi|190564090|gb|EDV18054.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005678|gb|ACP15421.1| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. CDC 684]
 gi|229268206|gb|ACQ49843.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0248]
 gi|269850227|gb|AAP26976.2| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. Ames]
          Length = 476

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 162/483 (33%), Positives = 258/483 (53%), Gaps = 28/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+H+
Sbjct: 60  QLEALGSTLIIRKGSTQEEIL----SLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 --PSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              S +      P+ + ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP   
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTA 292

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLV
Sbjct: 293 Y-KPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411

Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476
            +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y +
Sbjct: 412 EYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471

Query: 477 AKK 479
            K+
Sbjct: 472 MKE 474


>gi|229185362|ref|ZP_04312545.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
 gi|228598095|gb|EEK55732.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
          Length = 476

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 161/485 (33%), Positives = 260/485 (53%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S  ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGSTEEEILSLIE----QLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISK--VQSIKGGNSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 SSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +++  YP 
Sbjct: 234 LAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYMLYHYPF 290

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 291 TAY-KPLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L+K LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LIKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 410 NGEYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|124007987|ref|ZP_01692687.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134]
 gi|123986571|gb|EAY26370.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134]
          Length = 447

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 172/494 (34%), Positives = 258/494 (52%), Gaps = 80/494 (16%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH------FI 61
           S+ + W R DLR+ DN  LY A  N +  V+ +FI     + +H +   +        +I
Sbjct: 3   SITVFWFRRDLRLHDNTGLYEALKN-EQNVLPIFI-----FDRHILDDLEDKKDLRVAYI 56

Query: 62  YASLLQVQKSLS---QKGIVFQYHQCSNFDDSIEW----LDSYCLQQRVTKLFYNRQYEI 114
           YA+L Q+Q+SL+   Q  +   Y       + +      L+    Q  V  ++ N  YE 
Sbjct: 57  YAALQQIQQSLADDLQSSLKVYYDYPEQVFEQLTQAGITLNGETYQ--VKSVYTNHDYEP 114

Query: 115 NEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
              +RD+ +++ L +  +   SF D V+     +L +A + Y V+TP+ K    +L  A 
Sbjct: 115 YARQRDEKVQQILSNSGVAWHSFKDQVIFEKQEVLTNADKPYTVFTPYSKKWKHHLTDAH 174

Query: 174 LRSLPVPA-----IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC----- 223
           L+   V +     ++L+  +                 P+ P+ +   + I + F      
Sbjct: 175 LQERLVASHAQNLLKLSPQL-----------------PLMPLEKTGFVDINKSFSSKTIK 217

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           K+ V  Y + RD PA+QGTS+LS +L  G +S R+   +  +++ D          +WLN
Sbjct: 218 KQLVIDYQQNRDFPAVQGTSRLSVHLRFGTVSIRKI-VKAAQKYSD----------TWLN 266

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           ELIWREFY  ++  +P V + K F P  + I+W  +    + W +G TG+PI+DA MR+L
Sbjct: 267 ELIWREFYMMILYSFPHV-VDKSFKPAYDCIQWRNNPDEFKRWCEGTTGYPIVDAGMREL 325

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           NT G+MHNR+RMITASFL K LL+DWR GE YF  +LLD DL++NNGGWQWAA +G D+ 
Sbjct: 326 NTTGFMHNRVRMITASFLTKHLLIDWRWGEAYFAKKLLDYDLSANNGGWQWAAGSGCDAA 385

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           PYFR+FNP  Q ++FD Q  +IR W+PE                   +LS  YP PIV+H
Sbjct: 386 PYFRVFNPYAQTEKFDKQRQYIRQWVPEF------------------ELS-RYPAPIVEH 426

Query: 464 KKACHHTLNQYYAA 477
           K A    L+ Y A 
Sbjct: 427 KFARQRALDTYKAG 440


>gi|304391382|ref|ZP_07373324.1| cryptochrome-2 [Ahrensia sp. R2A130]
 gi|303295611|gb|EFL89969.1| cryptochrome-2 [Ahrensia sp. R2A130]
          Length = 480

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 165/478 (34%), Positives = 240/478 (50%), Gaps = 34/478 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQV 68
           ++W R DLR+ DN AL AA   S   V+AVF+     E  R+ G + R   +++ SL  +
Sbjct: 8   IMWFRQDLRLDDNPALIAAAE-SGKPVVAVFVFDEASEGIRKLGGAMR--WWLHHSLKSL 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            K L   G+     +        E +     +     + +NR+Y   E   D  ++   +
Sbjct: 65  TKDLGALGVDLILRRGPG----AEVIFDLAKEVGAENVVWNRRYGDAEQTVDATIKGDFE 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                KS+   ++  P ++       YKVYTPF K   +  +  D    P       G V
Sbjct: 121 GE--AKSYGGIIMHEPINVRTGTGNPYKVYTPFWKKFCEMGLPRDAHPAPQEIAGFGGDV 178

Query: 189 TPSNI---------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              N+         P + D   +   P    GE  A    R F  + +  Y   RD+P  
Sbjct: 179 ASDNLDEWDLLPTKPDWSDGWLKVWTP----GESAAQTRARAFMSDDLDVYDSARDLPGD 234

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LSP+L  G +SP + W   ++  +    K +    +W+ EL+WREF  HL+  +P
Sbjct: 235 DRTSRLSPHLRWGEISPYRLWQMAQDGRLSAGSKARE---TWVKELVWREFSYHLLQEWP 291

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   + F    +   W  D   L+AW++G TG+PI+DA MRQL   GWMHNR+RMI  S
Sbjct: 292 DLA-NENFNTKYDSFPWRSDDEQLRAWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMIVGS 350

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK LL+DWR GE++F   L+DGD ASN+  WQW A TG D+ P+FRIFNP +Q ++FD
Sbjct: 351 FLVKHLLLDWRHGEDWFWDTLVDGDPASNSAQWQWVAGTGADAAPFFRIFNPIMQAEKFD 410

Query: 420 PQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHHTL 471
             G +I+ W+PEL  +P +Y+     AP + L    + L   YP PIVDHK+A    L
Sbjct: 411 KDGVYIKKWVPELAKLPAKYLPSPWEAPLTVLRDAGVKLGDTYPRPIVDHKEARERAL 468


>gi|2126786|pir||I39818 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) - Bacillus firmus
           (fragment)
 gi|142783|gb|AAA22361.1| DNA photolyase [Bacillus firmus]
          Length = 339

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/335 (43%), Positives = 197/335 (58%), Gaps = 31/335 (9%)

Query: 155 YKVYTPFRKALIQN------LVQADLRSLPVPAIRLTGPVTPS-----NIPRFFDYPFQA 203
           YKV+TP+ KA  +       +++ D+  L     + T P   +     N+ +   Y + A
Sbjct: 11  YKVFTPYYKAWAKERKRTPAVIKRDV--LLGSVHKGTAPDREAETLFNNLIKKCSYDWSA 68

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           I      GE++A+  L+ F K+++  Y   RD P+I GTS+LSPY+  G +S R  +  +
Sbjct: 69  I------GEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSRLSPYIKTGAVSSRSIYYHI 122

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
                D        A ++L EL WR+FYR ++ FY   C  +  +    ++ W+ D   L
Sbjct: 123 LNAEAD-----SYSAETFLKELAWRDFYR-MVHFYEPDCKDREIMEGYRELNWSHDQDDL 176

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            +WK+G TGFPI+DA MRQL   GWMHNRLRMITASFL KDLL+DWR+GE YF   L+D 
Sbjct: 177 TSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLIDY 236

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           D +SN GGWQWAAS G D+VPYFRIFNP  Q KRFD  GT+IR ++PELN+VP  YIH P
Sbjct: 237 DPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIHEP 296

Query: 444 HSWLD------KNDLSLNYPLPIVDHKKACHHTLN 472
               +      K  L  +YPLPIVDH K     L+
Sbjct: 297 WKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALS 331


>gi|254514439|ref|ZP_05126500.1| DNA photolyase [gamma proteobacterium NOR5-3]
 gi|219676682|gb|EED33047.1| DNA photolyase [gamma proteobacterium NOR5-3]
          Length = 482

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 169/488 (34%), Positives = 251/488 (51%), Gaps = 46/488 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67
           ++W R DLRI D  AL AA  +   KV+ ++I     P  W   G S     +++ SL  
Sbjct: 6   VLWFRQDLRINDLPALQAATRDGQ-KVLPIYILDEDAPGDWSPGGAS---RWWLHHSLTA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + +   G    + +      SI  L   C       ++ +R+YE    + ++ L K L
Sbjct: 62  LAQDIDHLGGTLIFRKGKTL--SI--LRDVCEASGARAIYCSRRYEPWAGQEEQTLYKAL 117

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I  K F  S+L  PGS+L      +KV+TPF +A  +N V         P++    
Sbjct: 118 DSDNISFKRFPGSLLHEPGSVLTQGGGPFKVFTPFWRACRRNEVPQPAEK---PSVAWAE 174

Query: 187 PVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            +    +      PR  D+   + +  +  GE  A   L  F  + V  Y ++RD+P++ 
Sbjct: 175 GIQSDTLDAWKLLPRDPDWA-ASWNEFWQPGENGAQARLHAFLDDTVSRYADERDLPSVD 233

Query: 241 GTSQLSPYLSIGVLSPRQCW-----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            TS++S +L  G +SPRQ W      +L++   D  I        +  EL WREF  HL+
Sbjct: 234 ATSRMSAHLHHGEISPRQIWAMCEQKKLEQPHSDTAIN------KFQAELGWREFSYHLL 287

Query: 296 AFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            F+P +    P  P+ E      W  +   LQAW++G TG+PI+DA MR+L   G MHNR
Sbjct: 288 HFFPHL----PETPFKENFSGFPWQANETYLQAWQRGQTGYPIVDAGMRELWATGIMHNR 343

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RM+ ASFL K LL  WR GE++F   L+D DLASN   WQW A +G D+ PYFRIFNP 
Sbjct: 344 VRMVVASFLCKHLLQHWRCGEDWFWDTLVDADLASNGCSWQWVAGSGADAAPYFRIFNPV 403

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
            QG++FD QG ++R W+PE+  +  +Y+H    AP   L +  ++L  +YP PIVDH++A
Sbjct: 404 TQGEKFDKQGDYVRRWVPEIAALSNKYLHKPWEAPAEVLSQAGVTLGADYPEPIVDHREA 463

Query: 467 CHHTLNQY 474
               L+ Y
Sbjct: 464 RQAALDAY 471


>gi|6324962|ref|NP_015031.1| Phr1p [Saccharomyces cerevisiae S288c]
 gi|130158|sp|P05066|PHR_YEAST RecName: Full=Deoxyribodipyrimidine photo-lyase, mitochondrial;
           AltName: Full=DNA photolyase; AltName:
           Full=Photoreactivating enzyme; Flags: Precursor
 gi|4176|emb|CAA26944.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|1420831|emb|CAA99718.1| PHR1 [Saccharomyces cerevisiae]
 gi|151945461|gb|EDN63704.1| photolyase [Saccharomyces cerevisiae YJM789]
 gi|207340799|gb|EDZ69038.1| YOR386Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269949|gb|EEU05204.1| Phr1p [Saccharomyces cerevisiae JAY291]
 gi|259149859|emb|CAY86663.1| Phr1p [Saccharomyces cerevisiae EC1118]
 gi|285815252|tpg|DAA11145.1| TPA: Phr1p [Saccharomyces cerevisiae S288c]
 gi|323346400|gb|EGA80689.1| Phr1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 565

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 166/506 (32%), Positives = 257/506 (50%), Gaps = 50/506 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQS 58
           +S  + W RNDLR+ DN  LY +          N+ AK+ AV++   + WR H  S  + 
Sbjct: 74  VSTVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKL 133

Query: 59  HFIYASLLQVQKSLSQKGI---VFQYHQ----CSNFDDSIEWLDSYCLQQRV---TKLFY 108
            FI  +L  +Q+SL++  I   ++++H      SN  + +E+    C+       T +  
Sbjct: 134 MFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITA 193

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           N +Y+ +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K  +  
Sbjct: 194 NIEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLY 253

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-------------MFPIGEQNA 215
           +      +  +  + +  P+  +    F   PFQ   P             +  + E+ A
Sbjct: 254 VNNYKKSTSEICHLHIIEPLKYNET--FELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAA 311

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLL 271
           L  L+ F   K   Y  ++D+  + GTS LS Y++ G +S R    Q +     + +   
Sbjct: 312 LSRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKA 371

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
           +K  S   +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  G T
Sbjct: 372 LKDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNT 431

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G PI+DA MR+L   G+++NR RMITASFL K+LL+DWR GE +FM  L+DGD +SN GG
Sbjct: 432 GIPIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGG 491

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           W + +STG D+ PYFR+FN  IQ K++DPQ  F++ W+PEL +              +N 
Sbjct: 492 WGFCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPELIS-------------SENK 538

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAA 477
              NYP P+VD K +    L  Y  A
Sbjct: 539 RPENYPKPLVDLKHSRERALKVYKDA 564


>gi|206969086|ref|ZP_03230041.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH1134]
 gi|206736127|gb|EDZ53285.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH1134]
          Length = 476

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 165/485 (34%), Positives = 260/485 (53%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++    Q     I +    ++  +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDETFSIGSAAKWWLRHAIMDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLKALGSTLIIRKGNTQEEIL----SLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISR--VQSIKWGNSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQNVHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP 
Sbjct: 234 LAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   W+K+  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 290 FTVSKPLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL+++P +YIH    AP   L K ++ L   YP PIVDHK A    L  Y
Sbjct: 410 NGEYIRRWVPELSDIPNKYIHKPWEAPAHILQKANIKLGDTYPYPIVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
 gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
          Length = 467

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 169/469 (36%), Positives = 244/469 (52%), Gaps = 26/469 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   L W R DLR+ DN  L AA      +V+ VF+  P +     ++  +  F+  SL 
Sbjct: 1   MGPWLFWHRRDLRLADNLGL-AAVSAITPEVMGVFVLDPAELEHPTMAPARRWFLLESLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+   Q G      +     + +E L     Q     + +NR  E    +RD+ L   
Sbjct: 60  ELQQRWRQAGSQLLLLE----GNPVELLPRLAQQLGAAGVAWNRDVEPLVRQRDRELAAA 115

Query: 127 LQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   +  + D D +L+PP  +       Y+VY P+ ++  +   Q   + +P P+  L 
Sbjct: 116 LKAIGVRVAADWDQLLVPPEQLKTGGGDPYRVYGPYWRSWEK---QPKAKPVPAPS-ELK 171

Query: 186 GPVTP--SNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             + P  S +P   + P +  +     P  P GE  AL  L  F    + +Y E R++P 
Sbjct: 172 ALLKPDLSGLPVLNEVPVEPWEGADLCPCRP-GETAALEQLEHFAARAMEHYCEGRNLPG 230

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAF 297
            +GTS LS  L  G LSPR  W    + +       +  + + W  EL WREFY+  +  
Sbjct: 231 DEGTSTLSAALRAGSLSPRTAWAASLDVWSHCRSDEQRQSVTVWQQELAWREFYQQALFH 290

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +  G P+ P   +  W  D   L+AW+ G TG PI+DAAMRQL   G+MHNR RMI 
Sbjct: 291 FPELADG-PYRPQWRQFPWEDDPVRLKAWQDGLTGVPIVDAAMRQLVQTGFMHNRCRMIV 349

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVKDL+ DWR GE +FM+  +DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q  +
Sbjct: 350 ASFLVKDLICDWRHGEAFFMAHEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPFTQASK 408

Query: 418 FDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           FDP+ T+IR WLPEL ++ T+  I      L++      YP PIV+HK+
Sbjct: 409 FDPEATYIRRWLPELAHINTKDLISGDIGALERR----GYPEPIVNHKQ 453


>gi|190407676|gb|EDV10943.1| photolyase [Saccharomyces cerevisiae RM11-1a]
          Length = 565

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 166/506 (32%), Positives = 257/506 (50%), Gaps = 50/506 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQS 58
           +S  + W RNDLR+ DN  LY +          N+ AK+ AV++   + WR H  S  + 
Sbjct: 74  VSTVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKL 133

Query: 59  HFIYASLLQVQKSLSQKGI---VFQYHQ----CSNFDDSIEWLDSYCLQQRV---TKLFY 108
            FI  +L  +Q+SL++  I   ++++H      SN  + +E+    C+       T +  
Sbjct: 134 MFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITA 193

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           N +Y+ +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K  +  
Sbjct: 194 NIEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVTPGLITTDRGTNYSVFTPWYKKWVLY 253

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-------------MFPIGEQNA 215
           +      +  +  + +  P+  +    F   PFQ   P             +  + E+ A
Sbjct: 254 VNNYKKSTSEICHLHIIEPLKYNET--FELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAA 311

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLL 271
           L  L+ F   K   Y  ++D+  + GTS LS Y++ G +S R    Q +     + +   
Sbjct: 312 LSRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKA 371

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
           +K  S   +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  G T
Sbjct: 372 LKDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNT 431

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G PI+DA MR+L   G+++NR RMITASFL K+LL+DWR GE +FM  L+DGD +SN GG
Sbjct: 432 GIPIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGG 491

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           W + +STG D+ PYFR+FN  IQ K++DPQ  F++ W+PEL +              +N 
Sbjct: 492 WGFCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPELIS-------------SENK 538

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAA 477
              NYP P+VD K +    L  Y  A
Sbjct: 539 RPENYPKPLVDLKHSRERALKVYKDA 564


>gi|221633352|ref|YP_002522577.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
 gi|221156145|gb|ACM05272.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
          Length = 467

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 167/498 (33%), Positives = 262/498 (52%), Gaps = 59/498 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  + W+R DLR+ DN+AL AA   +  +++ +F+  P        S R++ F++A+L 
Sbjct: 1   MTTVVWWVRRDLRLHDNQALAAALTRA-RELVPLFVLDPALLAGPTSSQRRNAFLFAALR 59

Query: 67  QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
            +  +L ++G  ++ +  +          L +   +   T +           RRD+ + 
Sbjct: 60  SLDAALRRRGSRLIVRAGRPEQV------LPTVVRESGATLVMAEADGSPYARRRDEAVA 113

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183
           + +  +++    + S L P GSI     + Y+VY+ FR+A  +         LP+P+ + 
Sbjct: 114 RSVPLQLV----EGSTLRPLGSIRAPTGEPYRVYSQFRRAWFR---------LPIPSPQD 160

Query: 184 --------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
                          + P+  S +         A+   F   E  A   L+ F  + +  
Sbjct: 161 ILPAPPRLPPVPRLASEPIPESPL---------AVPERFAPSEDAARQRLQHFLAQGLAS 211

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y  +R+     G+SQLSPY   G+LS R+ W      ++D      +GA +WL+EL+WRE
Sbjct: 212 YHLRRNALDGSGSSQLSPYFRFGLLSVREAWC-AAARYLDE-PDAAAGARAWLDELLWRE 269

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FY+HL+A +P         P    + W   +  L  W++G TGFP++DAAMRQL + GWM
Sbjct: 270 FYQHLLAAWPESARMS-MQPEFRDVAWPGSNDALARWQEGRTGFPVVDAAMRQLVSEGWM 328

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            NR RMI ASFL K LLVDWR GE +F  +L+DGDLA+N GGWQW+A TG D+ PYFRIF
Sbjct: 329 SNRARMIVASFLSKLLLVDWREGERFFRRELVDGDLAANVGGWQWSAGTGTDAAPYFRIF 388

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NYPLPIV 461
           NP +QG++ DP G+++R WLPEL NVP +Y+ AP  W    ++ L        +YP PIV
Sbjct: 389 NPVLQGEQHDPNGSWVRTWLPELANVPREYLFAP--WRMPIEVQLRAGCRIGHDYPAPIV 446

Query: 462 DHKKACHHTLNQYYAAKK 479
           +++ A    L  + + ++
Sbjct: 447 EYESARARALEWFRSVRQ 464


>gi|118478461|ref|YP_895612.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
           str. Al Hakam]
 gi|196042568|ref|ZP_03109807.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           03BB108]
 gi|118417686|gb|ABK86105.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
           str. Al Hakam]
 gi|196026052|gb|EDX64720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           03BB108]
          Length = 476

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 161/485 (33%), Positives = 260/485 (53%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S  ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGSTEEEILSLIE----QLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISK--VQSIKGGNSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 SSLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +++  YP 
Sbjct: 234 LAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYMLYHYPF 290

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 291 TAY-KPLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L+K LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LIKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 410 NGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|186682403|ref|YP_001865599.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
 gi|186464855|gb|ACC80656.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
          Length = 481

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 171/468 (36%), Positives = 241/468 (51%), Gaps = 26/468 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S  KV+ VF   P    +  ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNTGLAAAKRRS-PKVVGVFCLDPHILERDDVAPVRVTYMIGCLQKLQE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             +Q G            D ++ + +         +F+N   E     RD+ +   L+ +
Sbjct: 65  RYAQVGSQLLILHA----DPVQAIPALAEAINAKAVFWNWDVEPYSQERDRTIINALKEK 120

Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQA-----DLRSLPV 179
            I       D +L  P  I       Y VYTPF K  I     N V+       L     
Sbjct: 121 GIEFLNQNWDQILNSPDEIRTGGNSPYTVYTPFWKNWITKPKANPVETLQNVEGLTEAEQ 180

Query: 180 PAIRLTGPVT-PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              +L+G +T PS     F +  Q I      GE  A   L +F  + +  Y EQR+ PA
Sbjct: 181 EIAKLSGSLTLPSAKDLGFIWDEQLI---ISPGEAAAQERLEEFTNKAITEYQEQRNFPA 237

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAF 297
           + GTSQLS  L  GV+  R  W    E   +   +  +    +W  EL WREFY+H M  
Sbjct: 238 VDGTSQLSAALKFGVIGIRTVWQATIEALENSRSEETAVNIRTWQQELAWREFYQHAMYN 297

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +  G  F    +   W  +    QAW +G TG+PI+DAAMRQ+N  GWMHNR RMI 
Sbjct: 298 FPELADGA-FRDTFKNFPWETNEEHFQAWCEGRTGYPIVDAAMRQMNESGWMHNRCRMIV 356

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDLL++ ++GE+YFM  L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q ++
Sbjct: 357 ASFLTKDLLINPQLGEKYFMKHLIDGDLSANNGGWQWSASSGMDPKP-VRIFNPASQTQK 415

Query: 418 FDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHK 464
           FDP+G +IR W+ EL +V T+Y +      L+++  ++ YP PIVDHK
Sbjct: 416 FDPEGEYIRQWVSELRSVDTEYLVTGKIPPLERH--AVGYPDPIVDHK 461


>gi|228959394|ref|ZP_04121085.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800294|gb|EEM47220.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 476

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 165/490 (33%), Positives = 256/490 (52%), Gaps = 42/490 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I    Q     I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNLALFEAVQSGE--VLPVYI----QDETFSIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +    ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++       P P  R+     
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPFSRVQSIKW 168

Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +++P         + P  P            E+ A    +KF   K+  Y E RD P  
Sbjct: 169 GNSLPASLSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ 228

Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              S L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+
Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP   + KP     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM
Sbjct: 286 YHYP-FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG
Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FD  G +IR W+PEL ++P +YIH    AP   L K+++ L   YP PIVDHK A   
Sbjct: 405 EKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARER 464

Query: 470 TLNQYYAAKK 479
            L  Y + K+
Sbjct: 465 ALCAYKSMKE 474


>gi|172170|gb|AAA34875.1| photolyase (EC 4.1.99.3) [Saccharomyces cerevisiae]
          Length = 565

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 165/506 (32%), Positives = 257/506 (50%), Gaps = 50/506 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQS 58
           +S  + W RNDLR+ DN  LY +          N+ AK+ AV++   + WR H  S  + 
Sbjct: 74  VSTAMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKL 133

Query: 59  HFIYASLLQVQKSLSQKGI---VFQYH----QCSNFDDSIEWLDSYCLQQRV---TKLFY 108
            FI  +L  +Q+SL++  I   ++++H      SN  + +E+    C+       T +  
Sbjct: 134 MFIMGALKNLQQSLAELHIPLLLWEFHTPKSSLSNTKEFVEFFKEKCMNVSSGTGTIITA 193

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           N +Y+ +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K  +  
Sbjct: 194 NIEYQTSELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLY 253

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-------------MFPIGEQNA 215
           +      +  +  + +  P+  +    F   PFQ   P             +  + E+ A
Sbjct: 254 VNNYKKSTSEICHLHIIEPLKYNET--FELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAA 311

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLL 271
           L  L+ F   K   Y  ++D+  + GTS LS Y++ G +  R    Q +    E+ +   
Sbjct: 312 LSRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRIRTRLIVNQAFQSCNEQIMSKA 371

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
           +K  S   +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  G T
Sbjct: 372 LKDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNT 431

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G PI+DA MR+L   G+++NR RMITASFL K+LL+DWR G+ +FM  L+DGD +SN GG
Sbjct: 432 GIPIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGKRWFMKHLIDGDSSSNVGG 491

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           W + +STG D+ PYFR+FN  IQ K++DPQ  F++ W+PEL +              +N 
Sbjct: 492 WGFCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPELIS-------------SENK 538

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAA 477
              NYP P+VD K +    L  Y  A
Sbjct: 539 RPENYPKPLVDLKHSRERALKVYKDA 564


>gi|221134512|ref|ZP_03560817.1| DNA photolyase [Glaciecola sp. HTCC2999]
          Length = 487

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 168/488 (34%), Positives = 251/488 (51%), Gaps = 30/488 (6%)

Query: 11  LVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++W R+DLR+ DN ALY A         V+ +FI          +      +++ SL  +
Sbjct: 7   IMWFRHDLRLNDNPALYRAIELAGEHGTVLPIFIHDTSAPDLAKLGEASQWWLHQSLASL 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             S  Q   +FQ        D +  ++S   Q   T + +NR YE  ++ RD  ++  L+
Sbjct: 67  SASTGQHLQLFQ-------GDPLAIIESLINQYDATHVIWNRGYEPWQITRDSHIKATLK 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLP-----VPAI 182
             V   S +  +L  P  +L      YKV+TP+ RK  +         S+P        I
Sbjct: 120 DCVEVLSCNGHLLWEPMQVLKKDNTPYKVFTPYYRKGCLTRSAPRYPESIPEHLPWATRI 179

Query: 183 RLTGPVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             T    P  +      P    +  I   +  GEQ A   L  + +E    Y E R++PA
Sbjct: 180 NSTNIFEPLTLDELKLMPSIQWYDTIAAQWQPGEQGAKDRLATYIEEAAGRYREDRNLPA 239

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-AFSWLNELIWREFYRHLMAF 297
           ++GTS LSP+L  G +S    W  +K+ F D    P++  A ++L+EL WREF  +L+  
Sbjct: 240 VKGTSLLSPHLHFGEISVNTVWYAIKDAFKD---DPENEHADTYLSELGWREFSHYLLFH 296

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +   + F        W      L+AW+ G TG PI+DA MR+L   G+MHNR+RMI 
Sbjct: 297 FPHI-QTENFSSKFNVFPWRSSPEELKAWQFGNTGIPIVDAGMRELYQTGYMHNRVRMIV 355

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFLVK+LL+DWR GE +F   LLD D+A+N+  WQW A +G D+ PYFRIFNP +QG++
Sbjct: 356 GSFLVKNLLIDWREGERWFWDCLLDADMAANSASWQWVAGSGADASPYFRIFNPILQGEK 415

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKACHHTL 471
           FD QG +++H+ PEL  +P ++IH    AP + L   ++ L  NYP PIVD K +    L
Sbjct: 416 FDKQGDYVKHYCPELRLLPPKFIHKPWEAPSNILQACNIVLGHNYPKPIVDLKVSRQRAL 475

Query: 472 NQYYAAKK 479
           + +   K+
Sbjct: 476 DAFAVTKE 483


>gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium tumefaciens str. C58]
 gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium tumefaciens str. C58]
          Length = 479

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 170/490 (34%), Positives = 244/490 (49%), Gaps = 38/490 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR++DN AL AA  +    VI V+I    +     +   Q  +++ SL  +  
Sbjct: 9   IVWFRKDLRLSDNLALLAAVEHG-GPVIPVYI---REKSAGPLGGAQEWWLHHSLAALSS 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL + G            D+   L     +     + +NR+Y+   +  DK L+++L+  
Sbjct: 65  SLEKAGGRLVLASG----DAERILRDLISETGADTVVWNRRYDPTGMATDKALKQKLRDD 120

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PAIRLTGPV 188
            +  +SF   +L  P  +   +   Y+VYTPF +AL      +D    P  P   LT P 
Sbjct: 121 GLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRAL----EGSDEPHAPADPPKSLTAPK 176

Query: 189 TPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 +  ++      P        ++  GE  AL  L  F    +  Y E RD PA  
Sbjct: 177 VWPKSEKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFIDGALKGYEEGRDFPAKP 236

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS LSP+L+ G +SP   W+  K     +     S    +  E++WREF  HL+  +P 
Sbjct: 237 ATSLLSPHLAAGEISPAAVWHATKGLSRHIASNDIS---RFRKEIVWREFCYHLLFHFPE 293

Query: 301 VCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +        W +  +   W  D    +AW +G TG+PI+DA MRQL   G MHNR+RMI 
Sbjct: 294 LGEKN----WNDSFDAFSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQHGTMHNRVRMIV 349

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL+K LL+DWR GE++F   L+D D ASN   WQW A +G D+ P+FRIFNP +QG++
Sbjct: 350 ASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEK 409

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTL 471
           FD  G ++R ++PEL  +  +YIH    AP   L K  + L   YPLPIVDH KA    L
Sbjct: 410 FDGDGDYVRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIVDHGKARERAL 469

Query: 472 NQYYAAKKQS 481
             Y A KK +
Sbjct: 470 AAYAAVKKTT 479


>gi|315169765|gb|EFU13782.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1342]
          Length = 477

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 254/493 (51%), Gaps = 54/493 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122
           + + Q+    I+             E LD +   +R       +++N        +RD+ 
Sbjct: 61  ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109

Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             +  +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P 
Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164

Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                   +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD 
Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDF 224

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295
           P    TS LS +L  G LS R  W        +L   P S    ++  EL WR+FY  + 
Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASAPSSLSKETFKKELAWRDFYNMIY 277

Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           + +P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNR
Sbjct: 278 STFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNR 333

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMITASFLVK+L +DWR GE+YF   L+D D+A+N GGWQWAASTG D+VPYFRIFNP 
Sbjct: 334 LRMITASFLVKNLHIDWRWGEKYFQKMLIDYDVANNIGGWQWAASTGTDAVPYFRIFNPI 393

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
           IQ K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +
Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNETLQTQYHVHLGENYPKPIVDYASS 453

Query: 467 CHHTLNQYYAAKK 479
              TL  Y A+K+
Sbjct: 454 KKQTLFLYEASKE 466


>gi|47528471|ref|YP_019820.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|47503619|gb|AAT32295.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. 'Ames Ancestor']
          Length = 469

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 161/480 (33%), Positives = 256/480 (53%), Gaps = 28/480 (5%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
            + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K L 
Sbjct: 2   FQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKKQLE 55

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-VI 132
             G      + S  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+H+ +I
Sbjct: 56  ALGSTLIIRKGSTQEEIL----SLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHKGMI 111

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT--P 190
           CK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+   
Sbjct: 112 CKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVSLSV 171

Query: 191 SNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
           S +      P+ + ++ ++   E+ A    ++F   K+  Y E RD P     S L+PYL
Sbjct: 172 SELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLAPYL 231

Query: 250 SIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP     K
Sbjct: 232 SFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTAY-K 287

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 288 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 347

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 348 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 407

Query: 426 RHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 408 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 467


>gi|228986230|ref|ZP_04146370.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773492|gb|EEM21918.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 476

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 159/485 (32%), Positives = 259/485 (53%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +   + V+  T        I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGEVLPLYVYDET------FSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNTMEEILSLIE----QLGMTAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYHAFQKQVISKPISK--VQSIKWGSSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E+   L    +    S++ + IWREF  +L+  YP 
Sbjct: 234 LAPYLSFGQISVKLIYHYLINKSNEKQCSLF---EQQVNSFIRQFIWREFSYYLLYHYP- 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 290 FTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 410 DGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|228940236|ref|ZP_04102807.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973152|ref|ZP_04133742.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979734|ref|ZP_04140058.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
 gi|228780047|gb|EEM28290.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
 gi|228786555|gb|EEM34544.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819362|gb|EEM65416.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326940880|gb|AEA16776.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 476

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 165/490 (33%), Positives = 255/490 (52%), Gaps = 42/490 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I    Q     I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QEETFSIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +    ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGRTEEEILSLIE----QLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++       P P  R+     
Sbjct: 116 GIICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVI-------PKPISRVQSIKW 168

Query: 190 PSNIPRFFDYPFQAIDPMFPIG----------EQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +++P         + P  P            E+ A    +KF   K+  Y E RD P  
Sbjct: 169 GNSLPASLSVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQ 228

Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              S L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+
Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP   + +P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM
Sbjct: 286 YHYP-FTVYRPLNKSFENFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG
Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FD  G +IR W+PEL  +P +YIH    AP   L K+++ L   YP PIVDHK A   
Sbjct: 405 EKFDKNGEYIRRWVPELRYIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARER 464

Query: 470 TLNQYYAAKK 479
            L  Y + K+
Sbjct: 465 ALCAYKSMKE 474


>gi|195941048|ref|ZP_03086430.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4024]
          Length = 172

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 117/170 (68%), Positives = 137/170 (80%)

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
           WTE+++W  +  LL+AW+ G TGFPI+DAAMRQLN  GWMHNRLRMITASFLVKDLL+DW
Sbjct: 2   WTEEVQWQSNETLLKAWQHGLTGFPIVDAAMRQLNETGWMHNRLRMITASFLVKDLLIDW 61

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FIR W+
Sbjct: 62  RTGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDADGEFIRRWV 121

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           PEL +VP + IH P  W DK  ++LNYP PIVDHK+A   TL  Y AA+K
Sbjct: 122 PELKDVPAKAIHEPWVWADKQRVTLNYPRPIVDHKQARVATLAAYEAARK 171


>gi|241764783|ref|ZP_04762791.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN]
 gi|241365713|gb|EER60409.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN]
          Length = 488

 Score =  263 bits (671), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 184/503 (36%), Positives = 263/503 (52%), Gaps = 42/503 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M++T A    LVW R DLR  D+ ALY A      KV  VF+           + R+  F
Sbjct: 1   MESTYATG--LVWFRRDLRACDHAALYHALTQCR-KVHCVFVFDRAILDALPRADRRVAF 57

Query: 61  IYASLLQVQKSLSQ------KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           I  +L+++  +L         G++ ++   +   D++  L      Q V   + N   E 
Sbjct: 58  IREALVELDAALRTLASHPAGGLIVRHALAT---DAVPELAQALQAQAV---YANHDDEP 111

Query: 115 NEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
             + RD L+  RL Q  +   +F D  LL    +L  A   Y V+TP++ A ++ +    
Sbjct: 112 QALSRDSLVRTRLAQTGIAFHTFKDHTLLERDEVLTQAGTPYSVFTPYKNAWLRTIDAFQ 171

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYP------FQAID--PM-FPIGEQNALHILRKFCK 224
           L+S  V  +R    + P   P     P      F+A    P+  P G   A+ +   F  
Sbjct: 172 LQSYAV--VRHAHRLAPRPAPECLPVPALGALGFEAAQNTPLGLPTGSSGAMRLFEDFL- 228

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           ++++ Y + RD PAI+G S LS +L  G +SPR     L      L      GA +WLNE
Sbjct: 229 QRIHRYADTRDYPAIKGPSYLSVHLRFGTISPRL----LARSAHALAQGGNPGATTWLNE 284

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMR 341
           LIWR+FY  ++A +P V + + F P  + I+W   ++   L  AW +G TG+P++DAAM 
Sbjct: 285 LIWRDFYCQILAHHPHV-VERSFKPAYDAIQWETGDEAQALFSAWCEGRTGYPLVDAAMA 343

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           QLN  G+MHNRLRM+ ASFLVK L +DWR GE YF + L D DLA+NNGGWQWA+S+G D
Sbjct: 344 QLNQTGYMHNRLRMVAASFLVKHLGIDWRWGEHYFATHLNDFDLAANNGGWQWASSSGCD 403

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSL--N 455
           + PYFRIFNP  Q ++FD +G FIR +LP+L  +P   +     A    L +  + L  +
Sbjct: 404 AQPYFRIFNPVSQSEKFDAEGRFIRRYLPQLAALPLAALHAPWRARPLELQEAGVVLGHH 463

Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478
           YP PIVDH  A   TL +Y   K
Sbjct: 464 YPQPIVDHDSARQRTLQRYAVVK 486


>gi|313126193|ref|YP_004036463.1| deoxyribodipyrimidine photo-lyase type i [Halogeometricum
           borinquense DSM 11551]
 gi|312292558|gb|ADQ67018.1| deoxyribodipyrimidine photo-lyase type I [Halogeometricum
           borinquense DSM 11551]
          Length = 469

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 160/475 (33%), Positives = 246/475 (51%), Gaps = 17/475 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL W R DLR++DN  L  A    D  V+ VF+   +     G  A +  F+  +L ++
Sbjct: 1   MHLHWHRRDLRVSDNHGLVTAADAGD--VVPVFVFDDDVLAHAG--AARVRFMLDALARL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++  ++       +     D  E L     +     + +N+ Y      RD+ + + L 
Sbjct: 57  RETYRERDSDLVVVRG----DPTEELPRLAAEYDADGVVWNKDYSRLARTRDEAVRRALD 112

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   +  D++   PGSI  +A   Y VYT F K   +N  +AD      P       
Sbjct: 113 EAGVAHDAVHDAIHHEPGSITTNAGDPYSVYTYFWKKW-RNRNKAD--PFSPPEADSLAD 169

Query: 188 VTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           V+ +++P   +  F   D      G + A   L  FC++ +Y Y   RD P    TS+LS
Sbjct: 170 VSGADLPTIEELGFSDPDATIQEAGTEAARERLAAFCEDAIYRYATDRDYPERNATSRLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGK 305
             L  G +  R+ +   +E   +     ++ +   + ++L WREFY H++ F P V   +
Sbjct: 230 ADLKWGTIGIREVYAATEEAAENADSDDEAKSVEEFQSQLAWREFYTHVLYFNPDVVT-Q 288

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +  +   I W +D   L AWK+G TG+PI+DA MRQL    +MHNR+RMI ASFL KDL
Sbjct: 289 NYKEYENDIAWREDEEALTAWKEGRTGYPIVDAGMRQLREEAYMHNRMRMIVASFLTKDL 348

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR G  +F + L D D A++NGGWQWAASTG D+ PYFRIFNP  QG+R+DP  T+I
Sbjct: 349 LIDWREGYAHFRAYLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDATYI 408

Query: 426 RHWLPELNNVPTQYIHA-PH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL +     IH  P+ S  ++  ++  YP PIV+H K     ++ + AA+
Sbjct: 409 QQYVPELRDATADEIHDWPNLSPTERETVAPEYPDPIVEHSKRRDQAISMFEAAR 463


>gi|256965091|ref|ZP_05569262.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704]
 gi|307273190|ref|ZP_07554436.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855]
 gi|256955587|gb|EEU72219.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704]
 gi|306510175|gb|EFM79199.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855]
          Length = 477

 Score =  262 bits (670), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 175/492 (35%), Positives = 251/492 (51%), Gaps = 52/492 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122
           + + Q+    I+             E LD +   +R       +++N        +RD+ 
Sbjct: 61  ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109

Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             +  +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P 
Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164

Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                   +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD 
Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDF 224

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P    TS LS +L  G LS R  W  L        +       ++  EL WR+FY  + +
Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYS 278

Query: 297 FYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRL
Sbjct: 279 AFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRL 334

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP I
Sbjct: 335 RMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPII 394

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467
           Q K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  + 
Sbjct: 395 QSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSK 454

Query: 468 HHTLNQYYAAKK 479
             TL  Y A+K+
Sbjct: 455 KQTLFLYEASKE 466


>gi|228934418|ref|ZP_04097254.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825271|gb|EEM71067.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 476

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 161/483 (33%), Positives = 257/483 (53%), Gaps = 28/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGSTEEEIL----SLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 --PSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP   
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTA 292

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFL+
Sbjct: 293 Y-KPLNKSFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLI 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411

Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476
            +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y +
Sbjct: 412 EYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471

Query: 477 AKK 479
            K+
Sbjct: 472 MKE 474


>gi|257086709|ref|ZP_05581070.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6]
 gi|256994739|gb|EEU82041.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6]
 gi|315027232|gb|EFT39164.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2137]
          Length = 477

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 177/490 (36%), Positives = 252/490 (51%), Gaps = 48/490 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125
           + + Q+  +    Q        E LD +   +R       +++N        +RD+   +
Sbjct: 61  ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183
             +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P    
Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P  
Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFINQKLRSYENKRDFPYQ 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFY 298
             TS LS +L  G LS R  W        +L   P S    ++  EL WR+FY  + + +
Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQ-------ELASAPSSLSKETFKKELAWRDFYNMIYSTF 280

Query: 299 P---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRM
Sbjct: 281 PQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRM 336

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           ITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ 
Sbjct: 337 ITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQS 396

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   
Sbjct: 397 KKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQ 456

Query: 470 TLNQYYAAKK 479
           TL  Y A+K+
Sbjct: 457 TLFLYEASKE 466


>gi|315147299|gb|EFT91315.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4244]
          Length = 477

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 252/493 (51%), Gaps = 54/493 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122
           + + Q+    I+             E LD +   +R       +++N        +RD+ 
Sbjct: 61  ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109

Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             +  +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P 
Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164

Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                   +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD 
Sbjct: 165 SYTAEKIFSACLFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDF 224

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295
           P    TS LS +L  G LS R  W        +L   P S    ++  EL WR+FY  + 
Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASAPSSLSKETFKKELAWRDFYNMIY 277

Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           + +P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNR
Sbjct: 278 STFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNR 333

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP 
Sbjct: 334 LRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPI 393

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
           IQ K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +
Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASS 453

Query: 467 CHHTLNQYYAAKK 479
              TL  Y A+K+
Sbjct: 454 KKQTLFLYEASKE 466


>gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 476

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 160/485 (32%), Positives = 257/485 (52%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +   + V+  T        I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGEVLPLYVYDET------FSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     +++E + S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLETLGSTLIIRK----GNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            + CK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E+   L    +    S++ + IWREF  +L+  YP 
Sbjct: 234 LAPYLSFGQISVKLIYHYLINKSNEKQCSLF---EQQVNSFIRQFIWREFSYYLLYHYP- 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 290 FTVNKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 410 DGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|257085148|ref|ZP_05579509.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1]
 gi|256993178|gb|EEU80480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1]
          Length = 477

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 177/490 (36%), Positives = 252/490 (51%), Gaps = 48/490 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125
           + + Q+  +    Q        E LD +   +R       +++N        +RD+   +
Sbjct: 61  ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183
             +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P    
Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P  
Sbjct: 168 AEKIFSACLFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFY 298
             TS LS +L  G LS R  W        +L   P S    ++  EL WR+FY  + + +
Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQ-------ELASAPSSLSKETFKKELAWRDFYNMIYSAF 280

Query: 299 P---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRM
Sbjct: 281 PQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRM 336

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           ITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ 
Sbjct: 337 ITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQS 396

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   
Sbjct: 397 KKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQ 456

Query: 470 TLNQYYAAKK 479
           TL  Y A+K+
Sbjct: 457 TLFLYEASKE 466


>gi|118363134|ref|XP_001014668.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
           thermophila]
 gi|89296559|gb|EAR94547.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
           thermophila SB210]
          Length = 486

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 164/487 (33%), Positives = 249/487 (51%), Gaps = 66/487 (13%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFI 61
           A     V + W R DLR+ DN ALY A   S  +V+ +FI   E   +       +  FI
Sbjct: 51  AKQKRKVSIFWFRRDLRLNDNTALYNALK-SQNEVVPLFIFDTEILDKLEDKKDARVEFI 109

Query: 62  YASLLQVQKSLSQKG--IVFQYHQCSN-FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           +  ++++Q+ L Q G  ++ ++    N F + +   D       +  ++ NR YE +  +
Sbjct: 110 HLYIMKIQEQLKQVGSTLIVKHGTVDNAFKELVSEFD-------IQSVYVNRDYESSAKQ 162

Query: 119 RDKLLEKRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           RD+ ++K ++     + +D  D V+    S  N     YKV+TP+ K  +  L   D   
Sbjct: 163 RDERIKKYVKQSANAEFYDFKDQVIFEASST-NKDGSPYKVFTPYSKKWLSILTSEDYSC 221

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA------LHILRKFCKEKVYYY 230
            P  ++          + +F+  P + +  +  IG + A      + +  K  K     Y
Sbjct: 222 RPSESL----------MEKFWKSPERKVMSLEEIGFEKAGIPFPSVELNEKIVKN----Y 267

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD P+I+GT+++S +L  G +S R           DL+ + K    ++LNELIWR+F
Sbjct: 268 DKTRDTPSIEGTTRMSVHLRFGTVSIR-----------DLVRRSKGLNATYLNELIWRDF 316

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y  ++  +P V     F P  +K+ W  +     AW +G TG+ ++DA MRQLN  G+MH
Sbjct: 317 YMMILDQFPHV-ENNNFKPAYDKLVWRNNVDEFMAWCEGKTGYHLVDAGMRQLNQTGYMH 375

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL K LL+DW+ GE YF S+LLD DL++NNGGWQWAA TG D+ PYFRIFN
Sbjct: 376 NRVRMVVASFLTKHLLIDWKWGERYFASKLLDYDLSANNGGWQWAAGTGTDAQPYFRIFN 435

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  Q K+FDP  T+I+ W+ +LN                   +  YP PIVDHK A    
Sbjct: 436 PDSQQKKFDPNYTYIKTWIKDLN-------------------TKTYPKPIVDHKLARERC 476

Query: 471 LNQYYAA 477
           L  +  A
Sbjct: 477 LQAFKKA 483


>gi|257089919|ref|ZP_05584280.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188]
 gi|256998731|gb|EEU85251.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188]
          Length = 477

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 251/493 (50%), Gaps = 54/493 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122
           + + Q+    I+             E LD +   +R       +++N        +RD+ 
Sbjct: 61  ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109

Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             +  +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P 
Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164

Query: 182 IRLTGPVT-----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                 +      P     + +   +     + +GE+ A   L  F  +K+  Y  +RD 
Sbjct: 165 SYTAEKIFSTCLFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDF 224

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295
           P    TS LS +L  G LS R  W        +L   P S    ++  EL WR+FY  + 
Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASMPSSLSKETFKKELAWRDFYNMIY 277

Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           + +P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNR
Sbjct: 278 STFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNR 333

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP 
Sbjct: 334 LRMITASFLVKNLHIDWRGGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPI 393

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
           IQ K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +
Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASS 453

Query: 467 CHHTLNQYYAAKK 479
              TL  Y A+K+
Sbjct: 454 KKQTLFLYEASKE 466


>gi|29376159|ref|NP_815313.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583]
 gi|227518787|ref|ZP_03948836.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104]
 gi|29343622|gb|AAO81383.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583]
 gi|227073782|gb|EEI11745.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104]
 gi|315575832|gb|EFU88023.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
           TX0309B]
 gi|315580484|gb|EFU92675.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
           TX0309A]
          Length = 477

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 175/489 (35%), Positives = 250/489 (51%), Gaps = 46/489 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VIWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125
           + + Q+  +    Q        E LD +   +R       +++N        +RD+   +
Sbjct: 61  ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183
             +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P    
Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P  
Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS +L  G LS R  W  L        +       ++  EL WR+FY  + + +P
Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFP 281

Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                 + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMI
Sbjct: 282 QQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K
Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
           +FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   T
Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQT 457

Query: 471 LNQYYAAKK 479
           L  Y A+K+
Sbjct: 458 LFLYEASKE 466


>gi|256959014|ref|ZP_05563185.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5]
 gi|257079045|ref|ZP_05573406.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1]
 gi|294781685|ref|ZP_06747020.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1]
 gi|307270984|ref|ZP_07552267.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248]
 gi|307289140|ref|ZP_07569096.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109]
 gi|256949510|gb|EEU66142.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5]
 gi|256987075|gb|EEU74377.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1]
 gi|294451237|gb|EFG19704.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1]
 gi|306499849|gb|EFM69210.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109]
 gi|306512482|gb|EFM81131.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248]
 gi|315037012|gb|EFT48944.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0027]
 gi|315164049|gb|EFU08066.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1302]
 gi|329571665|gb|EGG53346.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
           TX1467]
          Length = 477

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 175/492 (35%), Positives = 251/492 (51%), Gaps = 52/492 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122
           + + Q+    I+             E LD +   +R       +++N        +RD+ 
Sbjct: 61  ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109

Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             +  +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P 
Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164

Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                   +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD 
Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDF 224

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P    TS LS +L  G LS R  W  L        +       ++  EL WR+FY  + +
Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYS 278

Query: 297 FYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRL
Sbjct: 279 AFPQQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRL 334

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP I
Sbjct: 335 RMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPII 394

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467
           Q K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  + 
Sbjct: 395 QSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSK 454

Query: 468 HHTLNQYYAAKK 479
             TL  Y A+K+
Sbjct: 455 KQTLFLYEASKE 466


>gi|229549977|ref|ZP_04438702.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200]
 gi|312951532|ref|ZP_07770428.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102]
 gi|229304890|gb|EEN70886.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200]
 gi|310630498|gb|EFQ13781.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102]
 gi|315152445|gb|EFT96461.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0031]
 gi|315158111|gb|EFU02128.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0312]
 gi|327535168|gb|AEA94002.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1RF]
          Length = 477

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 177/490 (36%), Positives = 252/490 (51%), Gaps = 48/490 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125
           + + Q+  +    Q        E LD +   +R       +++N        +RD+   +
Sbjct: 61  ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183
             +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P    
Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P  
Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFY 298
             TS LS +L  G LS R  W        +L   P S    ++  EL WR+FY  + + +
Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQ-------ELASMPSSLSKETFKKELAWRDFYNMIYSTF 280

Query: 299 P---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRM
Sbjct: 281 PQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRM 336

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           ITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ 
Sbjct: 337 ITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQS 396

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   
Sbjct: 397 KKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQ 456

Query: 470 TLNQYYAAKK 479
           TL  Y A+K+
Sbjct: 457 TLFLYEASKE 466


>gi|312903342|ref|ZP_07762522.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635]
 gi|310633218|gb|EFQ16501.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635]
 gi|315577672|gb|EFU89863.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0630]
          Length = 477

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 252/493 (51%), Gaps = 54/493 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122
           + + Q+    I+             E LD +   +R       +++N        +RD+ 
Sbjct: 61  ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109

Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             +  +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P 
Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164

Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                   +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD 
Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDF 224

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295
           P    TS LS +L  G LS R  W        +L   P S    ++  EL WR+FY  + 
Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASMPSSLSKETFKKELAWRDFYNMIY 277

Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           + +P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNR
Sbjct: 278 STFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNR 333

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP 
Sbjct: 334 LRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPI 393

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
           IQ K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +
Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASS 453

Query: 467 CHHTLNQYYAAKK 479
              TL  Y A+K+
Sbjct: 454 KKQTLFLYEASKE 466


>gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           ATCC 10987]
 gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           ATCC 10987]
          Length = 476

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 162/485 (33%), Positives = 259/485 (53%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFKATQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S  ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGSTEEEILSLIE----QLGITAVYWNICYDPDRLQFNQNMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            + CK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GITCKEFNSHLLLEPWMIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ + +      P+ + I+ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 ESLSVTELHLLPTIPWTSHIESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S R  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP 
Sbjct: 234 LAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYHYP- 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   WN +  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 290 FTVYKPLNKNFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 410 DGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|256961892|ref|ZP_05566063.1| phrB [Enterococcus faecalis Merz96]
 gi|293382960|ref|ZP_06628878.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712]
 gi|293389551|ref|ZP_06634008.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613]
 gi|312907569|ref|ZP_07766560.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
           512]
 gi|312910187|ref|ZP_07769034.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
           516]
 gi|256952388|gb|EEU69020.1| phrB [Enterococcus faecalis Merz96]
 gi|291079625|gb|EFE16989.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712]
 gi|291081168|gb|EFE18131.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613]
 gi|310626597|gb|EFQ09880.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
           512]
 gi|311289460|gb|EFQ68016.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
           516]
          Length = 477

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 175/489 (35%), Positives = 251/489 (51%), Gaps = 46/489 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125
           + + Q+  +    Q        E LD +   +R       +++N        +RD+   +
Sbjct: 61  ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183
             +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P    
Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P  
Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS +L  G LS R  W  L        +       ++  EL WR+FY  + + +P
Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFP 281

Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                 + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMI
Sbjct: 282 QQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K
Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
           +FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   T
Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQT 457

Query: 471 LNQYYAAKK 479
           L  Y A+K+
Sbjct: 458 LFLYEASKE 466


>gi|307278038|ref|ZP_07559122.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860]
 gi|306505435|gb|EFM74621.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860]
          Length = 477

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 252/493 (51%), Gaps = 54/493 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122
           + + Q+    I+             E LD +   +R       +++N        +RD+ 
Sbjct: 61  ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109

Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             +  +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P 
Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164

Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                   +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD 
Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDF 224

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295
           P    TS LS +L  G LS R  W        +L   P S    ++  EL WR+FY  + 
Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASMPSSLSKETFKKELAWRDFYNMIY 277

Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           + +P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNR
Sbjct: 278 STFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNR 333

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP 
Sbjct: 334 LRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPI 393

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
           IQ K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +
Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASS 453

Query: 467 CHHTLNQYYAAKK 479
              TL  Y A+K+
Sbjct: 454 KKQTLFLYEASKE 466


>gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
 gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
          Length = 476

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 168/488 (34%), Positives = 260/488 (53%), Gaps = 38/488 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++    Q     +      +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYV----QDEAFSMGEASKWWLHHAVIDVKK 59

Query: 71  SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            L   G   I+ +          IE LD       +T +++N  Y+ + ++ ++ ++  L
Sbjct: 60  QLEALGSTLIIRKGRTEEAILSLIEKLD-------ITAVYWNICYDPDRLKSNQKMKMML 112

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--- 183
           + + +ICK F+  +LL    I       YKV+TPF  A  + ++   +    V +I+   
Sbjct: 113 EDKGIICKEFNSHLLLESWIIKKKDNTEYKVFTPFYNAFQKQVIPKPVSK--VQSIKWGS 170

Query: 184 -LTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            L   ++ S +      P+ + I+ M+   E+ A    +KF   K+  Y E RD P    
Sbjct: 171 SLPASLSVSELHLLPTIPWTSHIESMWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNA 230

Query: 242 TSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            S L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+  
Sbjct: 231 HSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLLYH 287

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           YP   + KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  
Sbjct: 288 YP-FAVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAV 346

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++
Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNIMGWQWVAGSGADASPYFRIFNPITQGEK 406

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTL 471
           FD  G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L
Sbjct: 407 FDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNAYPLPVVDHKAARERAL 466

Query: 472 NQYYAAKK 479
             Y + K+
Sbjct: 467 CAYKSMKE 474


>gi|257416128|ref|ZP_05593122.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis AR01/DG]
 gi|257157956|gb|EEU87916.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ARO1/DG]
          Length = 477

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 252/493 (51%), Gaps = 54/493 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122
           + + Q+    I+             E LD +   +R       +++N        +RD+ 
Sbjct: 61  ERIDQEAHLQIMVG-----------EPLDLFLRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109

Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             +  +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P 
Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGNKYQVFTPYY-----NKWKEAPKETPIPV 164

Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                   +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD 
Sbjct: 165 SYTAEKIFSACLFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLRSYENKRDF 224

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295
           P    TS LS +L  G LS R  W        +L   P S    ++  EL WR+FY  + 
Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASAPSSLSKETFKKELAWRDFYNMIY 277

Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           + +P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNR
Sbjct: 278 STFPQQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNR 333

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP 
Sbjct: 334 LRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPI 393

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
           IQ K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +
Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASS 453

Query: 467 CHHTLNQYYAAKK 479
              TL  Y A+K+
Sbjct: 454 KKQTLFLYEASKE 466


>gi|313674183|ref|YP_004052179.1| deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
 gi|312940881|gb|ADR20071.1| Deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
          Length = 433

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 161/473 (34%), Positives = 232/473 (49%), Gaps = 51/473 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67
           + + W R DLR+ DN ALY A    +  V+ +FI   E        S  + +FI+  L +
Sbjct: 4   ISIFWFRRDLRLYDNTALYYAIQ-ENIPVLPLFIFDSEILDDLKDKSDARVNFIHDQLTE 62

Query: 68  VQKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +   L +   G++ ++ +        E   S   +  +  +F NR YE   + RD+ ++ 
Sbjct: 63  INDQLKKIGSGVLIKHGKPE------EVYKSLIKEYNIQAVFTNRDYEPYALERDQKIDN 116

Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            LQ + I    F D V+     IL    + YKV+TPF+   ++ L    +    +     
Sbjct: 117 ILQQKGIGFYDFKDHVIFEKDEILTGGNEPYKVFTPFKNKWLEKLESGHIHPYEIHLTAE 176

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                   IP   +  F+  D   P  E         + +  +  Y ++RD PA  GTS+
Sbjct: 177 NFFQFEPEIPTLDEIGFRESDVPIPKKE---------YEESTIQKYDQERDFPAKNGTSR 227

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           L  +L  G +S R+            +   +    +WLNELIWR+FY  ++A +P V   
Sbjct: 228 LGIHLRFGTISIREA-----------VAHAQKLNDTWLNELIWRDFYSMILANFPHVVKN 276

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F    + I W       Q W  G TG+PI+DA MR+LN  G+MHNR+RMI ASFL K 
Sbjct: 277 -AFKAKYDAIPWRNSKEDFQKWCAGKTGYPIVDAGMRELNETGYMHNRVRMIVASFLTKH 335

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +LLD +LASNNGGWQWAA TG D+ PYFRIFNP  Q  +FD    +
Sbjct: 336 LLIDWRWGEAYFAEKLLDYELASNNGGWQWAAGTGTDAQPYFRIFNPYSQTDKFDKNKAY 395

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ W+PE+N                   + +YP P+VDHKKA    L+ Y +A
Sbjct: 396 IKKWIPEIN-------------------TSDYPEPMVDHKKARQRALDTYKSA 429


>gi|229545787|ref|ZP_04434512.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322]
 gi|256619098|ref|ZP_05475944.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200]
 gi|256853160|ref|ZP_05558530.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8]
 gi|307274924|ref|ZP_07556087.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134]
 gi|307291962|ref|ZP_07571831.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411]
 gi|229309099|gb|EEN75086.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322]
 gi|256598625|gb|EEU17801.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200]
 gi|256711619|gb|EEU26657.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8]
 gi|306496960|gb|EFM66508.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411]
 gi|306508372|gb|EFM77479.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134]
 gi|315029350|gb|EFT41282.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4000]
 gi|315034003|gb|EFT45935.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0017]
          Length = 477

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 177/493 (35%), Positives = 252/493 (51%), Gaps = 54/493 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122
           + + Q+    I+             E LD +   +R       +++N        +RD+ 
Sbjct: 61  ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109

Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             +  +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P 
Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164

Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                   +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD 
Sbjct: 165 SYTAEKIFSACLFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDF 224

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLM 295
           P    TS LS +L  G LS R  W        +L   P S    ++  EL WR+FY  + 
Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQ-------ELASAPSSLSKETFKKELAWRDFYNMIY 277

Query: 296 AFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           + +P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNR
Sbjct: 278 STFPQQKEEVIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNR 333

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP 
Sbjct: 334 LRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPI 393

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
           IQ K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +
Sbjct: 394 IQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASS 453

Query: 467 CHHTLNQYYAAKK 479
              TL  Y A+K+
Sbjct: 454 KKQTLFLYEASKE 466


>gi|257082516|ref|ZP_05576877.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol]
 gi|256990546|gb|EEU77848.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol]
          Length = 477

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 175/492 (35%), Positives = 250/492 (50%), Gaps = 52/492 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122
           + + Q+    I+             E LD +   +R       +++N        +RD+ 
Sbjct: 61  ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109

Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             +  +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P 
Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164

Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                   +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD 
Sbjct: 165 SYTAEKIFSACLFPEEEAAYGEQIARIPLKHYSVGEKTARRCLNTFINQKLRSYENKRDF 224

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P    TS LS +L  G LS R  W  L        +       ++  EL WR+FY  + +
Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYS 278

Query: 297 FYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRL
Sbjct: 279 AFPQQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRL 334

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP I
Sbjct: 335 RMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPII 394

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467
           Q K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  + 
Sbjct: 395 QSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSK 454

Query: 468 HHTLNQYYAAKK 479
             TL  Y A+K+
Sbjct: 455 KQTLFLYEASKE 466


>gi|257422581|ref|ZP_05599571.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98]
 gi|257164405|gb|EEU94365.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98]
 gi|315155723|gb|EFT99739.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0043]
          Length = 477

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 175/489 (35%), Positives = 250/489 (51%), Gaps = 46/489 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125
           + + Q+  +    Q        E LD +   +R       +++N        +RD+   +
Sbjct: 61  ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183
             +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P    
Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P  
Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS +L  G LS R  W  L        +       ++  EL WR+FY  + + +P
Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFP 281

Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                 + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMI
Sbjct: 282 QQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K
Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
           +FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   T
Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQT 457

Query: 471 LNQYYAAKK 479
           L  Y A+K+
Sbjct: 458 LFLYEASKE 466


>gi|55377670|ref|YP_135520.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
           43049]
 gi|55230395|gb|AAV45814.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
           43049]
          Length = 465

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 163/480 (33%), Positives = 233/480 (48%), Gaps = 28/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R DLR TDN  L AA  +    V+ VFI         G    +  F+  +L  +
Sbjct: 1   MRLHWHRRDLRATDNAGLAAATPSD--PVVPVFIFDTAVLDHAGPP--RVAFMLDALDSL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++    KG      +     D    L     Q    K+ + + Y      RD  + + L 
Sbjct: 57  REWYRDKGSDLVVAEG----DPTSVLPELAAQHGAEKVTWGKDYSGLARERDAAVRQALD 112

Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              + + +  ++VL  PG I  +    Y V+T F +        A       P+      
Sbjct: 113 DADVAREAVQNAVLHEPGEITTNDGDPYSVFTYFGRKWHDREKAA---PYDPPSADTLAD 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           V    +P   D  F+  +   P  G + A  +L  F  E VY Y E+RD PA + TS+LS
Sbjct: 170 VDGDALPTLADLGFEEPEADVPAAGTEEARALLDDFLDENVYEYEERRDFPADECTSRLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G +  R+ ++R +          +     + ++L WREFY  ++  +P V     
Sbjct: 230 AHLKFGTIGIREVYDRTQAAKEGTGGDRRDSVREFQSQLAWREFYTQVLFAHPHVVSSN- 288

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           +  +   IEW  D  LLQAWK G TG+PI+DA MRQL    +MHNR+RMI ASFL KDLL
Sbjct: 289 YKSYENPIEWENDEELLQAWKDGDTGYPIVDAGMRQLRDEAYMHNRVRMIVASFLTKDLL 348

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR G E+F  +L+D D A++NGGWQWAASTG D+ PYFRIFNP  QG+ +DP   +I+
Sbjct: 349 IDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPNAEYIK 408

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSL--------NYPLPIVDHKKACHHTLNQYYAAK 478
            ++PEL +   + IH      D ND SL         YP P+VDH +     L  +  A+
Sbjct: 409 EYVPELRDAAPEIIH------DWNDCSLTQRRSAAPEYPDPVVDHSERREEALAMFERAR 462


>gi|255975817|ref|ZP_05426403.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2]
 gi|255968689|gb|EET99311.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2]
          Length = 473

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 177/492 (35%), Positives = 251/492 (51%), Gaps = 54/492 (10%)

Query: 12  VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   ++
Sbjct: 1   MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57

Query: 71  SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLL 123
            + Q+    I+             E LD +   +R       +++N        +RD+  
Sbjct: 58  RIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQA 106

Query: 124 EKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            +  +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P  
Sbjct: 107 MRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVS 161

Query: 183 R-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                  +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P
Sbjct: 162 YTAEKIFSACLFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFP 221

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMA 296
               TS LS +L  G LS R  W        +L   P S    ++  EL WR+FY  + +
Sbjct: 222 YQDQTSHLSTFLRTGELSIRTIWQ-------ELASMPSSLSKETFKKELAWRDFYNMIYS 274

Query: 297 FYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRL
Sbjct: 275 TFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRL 330

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP I
Sbjct: 331 RMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPII 390

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467
           Q K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  + 
Sbjct: 391 QSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSK 450

Query: 468 HHTLNQYYAAKK 479
             TL  Y A+K+
Sbjct: 451 KQTLFLYEASKE 462


>gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH187]
 gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
 gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH187]
 gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
          Length = 476

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 158/485 (32%), Positives = 258/485 (53%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +   + V+  T        I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGEVLPLYVYDET------FSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +  ++    Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNTMEEILSLIE----QLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            + CK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E+   L    +    S++ + IWREF  +L+  YP 
Sbjct: 234 LAPYLSFGQISVKLMYHYLINKSNEKQCSLF---EQQVNSFIRQFIWREFSYYLLYHYP- 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 290 FTVYKPLNKSFEYFPWNNEKKLLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 410 DGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|307945306|ref|ZP_07660642.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
 gi|307771179|gb|EFO30404.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
          Length = 486

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 174/506 (34%), Positives = 258/506 (50%), Gaps = 50/506 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQ 57
           M    A    +VW R DLR+ DN ALY A    +  VI VFI   A P       I A  
Sbjct: 1   MSNRVAFMTSIVWFRQDLRVADNAALYHAAQ--EGPVIPVFIWDDAAPLT-NSQAIGAAG 57

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             +++ SL  +++ L    ++          D    L    L+ +   + +NR Y+   +
Sbjct: 58  KWWLHHSLTALREQLGDLVVLR--------GDPATVLQELALETKAEAVRWNRAYDEYGI 109

Query: 118 RRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RDK ++  L+   ++ KSF  +VL  P  I   +   YKVY+ + +A+    V A    
Sbjct: 110 ERDKKIKTELRESGLMVKSFKGNVLHEPWDIKTGSGSSYKVYSHYWRAVKARGVAA---P 166

Query: 177 LPVP-AIRLT------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
           LPVP  I L       G      +PR  ++  +  + ++  GEQ A   L  F  + +  
Sbjct: 167 LPVPDKIELAVGWVSLGIEALDLLPRDPNWA-EGWENVWTPGEQGARERLCVFLDQGLNG 225

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y E R+ P +   S+LSP+L  G +SP Q W    +   D+  +  + A  +L+E++WRE
Sbjct: 226 YGELRNRPDLPNVSRLSPHLRFGEISPTQIWA-TTQMHADVHPEHATDADKFLSEIVWRE 284

Query: 290 FYRHLMAFYPSVC-----MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           F  HL+  +P +      +G    PW E  E       L+AW++G TG+PI+DA MR+L 
Sbjct: 285 FSYHLLFHFPDLPEKNWKVGFDAYPWRENAE------DLRAWQRGQTGYPIVDAGMRELW 338

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+MHNR+RMI ASFLVK L + W+ GE +F   LLD D+A+N+  WQW + TG D+ P
Sbjct: 339 QTGYMHNRVRMIVASFLVKHLRISWQHGENWFRDTLLDADVANNSASWQWVSGTGADAAP 398

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---------N 455
           YFRIFNP  Q ++FDP G +IR W+PEL ++    + AP    D + + L          
Sbjct: 399 YFRIFNPYTQAQKFDPDGAYIRKWVPELKDLRAPQLFAPQ---DASPMDLRAAGVRLGET 455

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQS 481
           YPLP+VDH+ A    L+ Y A K ++
Sbjct: 456 YPLPMVDHQTARKKALDGYEAVKAEN 481


>gi|255972759|ref|ZP_05423345.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1]
 gi|255963777|gb|EET96253.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1]
          Length = 473

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 177/489 (36%), Positives = 251/489 (51%), Gaps = 48/489 (9%)

Query: 12  VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   ++
Sbjct: 1   MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEKR 126
            + Q+  +    Q        E LD +   +R       +++N        +RD+   + 
Sbjct: 58  RIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRF 109

Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
            +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P     
Sbjct: 110 FEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYTA 164

Query: 184 ---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P   
Sbjct: 165 EKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQD 224

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYP 299
            TS LS +L  G LS R  W        +L   P S    ++  EL WR+FY  + + +P
Sbjct: 225 QTSHLSTFLRTGELSIRTIWQ-------ELASMPSSLSKETFKKELAWRDFYNMIYSTFP 277

Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                 + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMI
Sbjct: 278 QQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 333

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K
Sbjct: 334 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 393

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
           +FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   T
Sbjct: 394 KFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQT 453

Query: 471 LNQYYAAKK 479
           L  Y A+K+
Sbjct: 454 LFLYEASKE 462


>gi|284989430|ref|YP_003407984.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM
           43160]
 gi|284062675|gb|ADB73613.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM
           43160]
          Length = 454

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 163/481 (33%), Positives = 233/481 (48%), Gaps = 46/481 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAA--CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M   L+W R DLR+ D+ AL  A      D  V+ VF+  P  W   G+  RQ  F+   
Sbjct: 1   MPTALLWFRRDLRLADHPALLDAREAAGPDGAVVPVFVFDPRLWGPSGLPRRQ--FLLDC 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +   +    ++          D +  + +  +        Y R+       RD  +E
Sbjct: 59  LADLGAQVDGALVMRSGDPARVLPDLVREVGAGSVHVSADTGPYGRE-------RDAAVE 111

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           + L    + ++     + P G +       ++V++PF +A  ++  +        PA R 
Sbjct: 112 RALGDVPLVRTGSPYAVTP-GRVTKSDGTPFRVFSPFARAWREHGWRD-------PAPR- 162

Query: 185 TGPVTPSNIP-----RFFDYP-FQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                P  +P     R  D P    +D   + P GE  A    R+F  E++  Y   R+ 
Sbjct: 163 -----PDAVPWSTGVRSEDPPEVPGLDGVRLPPAGEAAASDAWRRFRAERLEGYKSTRNT 217

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P   GTS+LS YL  G + PR           DL       A S+ NEL WR+FY  ++ 
Sbjct: 218 PGSDGTSRLSAYLKYGCVHPRTL-------LADLEDLDSDSADSFRNELAWRDFYADVLW 270

Query: 297 FYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
             P     +P       + ++          AW +G TG+PI+DA MRQL    ++HNR+
Sbjct: 271 HRPESAR-EPLDERMHAMAYDTGPDADERFAAWARGRTGYPIVDAGMRQLLGEAYVHNRV 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFLVKDL VDWR G  YFM  L+DGDLASNN GWQW A TG D+ PY+R+FNPT 
Sbjct: 330 RMIIASFLVKDLHVDWRRGARYFMQHLVDGDLASNNHGWQWVAGTGTDASPYYRVFNPTR 389

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           QG+ FDP G ++R W+PEL +VP +++H P  WL  + +   YPLPIVDH +     L +
Sbjct: 390 QGREFDPDGDYVRRWVPELRDVPARHVHEP--WLAPDGVPDGYPLPIVDHAEERRVALER 447

Query: 474 Y 474
           Y
Sbjct: 448 Y 448


>gi|257419331|ref|ZP_05596325.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11]
 gi|257161159|gb|EEU91119.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11]
          Length = 477

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 175/489 (35%), Positives = 250/489 (51%), Gaps = 46/489 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125
           + + Q+  +    Q        E LD +   +R       +++N        +RD+   +
Sbjct: 61  ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183
             +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P    
Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSRYQVFTPYY-----NKWKEAPKETPIPVSYT 167

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P  
Sbjct: 168 AEKIFSACLFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS +L  G LS R  W  L        +       ++  EL WR+FY  + + +P
Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFP 281

Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                 + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMI
Sbjct: 282 QQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K
Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
           +FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   T
Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQT 457

Query: 471 LNQYYAAKK 479
           L  Y A+K+
Sbjct: 458 LFLYEASKE 466


>gi|196037804|ref|ZP_03105114.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
 gi|196031074|gb|EDX69671.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
          Length = 476

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 161/483 (33%), Positives = 257/483 (53%), Gaps = 28/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S  ++ +    S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGSTQEEIL----SLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 --PSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              S +      P+ + ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP   
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTA 292

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLV
Sbjct: 293 Y-KPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411

Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476
            +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y +
Sbjct: 412 EYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471

Query: 477 AKK 479
            K+
Sbjct: 472 MKE 474


>gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 476

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 163/488 (33%), Positives = 253/488 (51%), Gaps = 38/488 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQ+
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHAIIDVQR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +    S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEAVGSTLIIRKGNILEEIL----SLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-------PVPAI 182
            + CK F+  +LL P  I       YKV+TPF  A  + +V   +  +        +PA 
Sbjct: 116 GITCKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQIVPKPISKVQRIKGGNSLPAS 175

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                +      R+  +     DP     E+ A    +KF   K+  Y E RD P     
Sbjct: 176 LSVSELHLLPTIRWTTHMESIWDPT----EEGAYKTCKKFFSSKLASYSEGRDFPNENAH 231

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----SWLNELIWREFYRHLMAF 297
           S L+PYLS G +S +  ++ L    +D   + +   F     S++ +LIWREF  +L+  
Sbjct: 232 SMLAPYLSFGQISVKWMYHYL----IDKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYH 287

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           YP   + KP     E   WNK+  LL  W++G TG+P IDA MR+L   G+MHNR RM  
Sbjct: 288 YP-FTVYKPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAV 346

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++
Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTL 471
           FD  G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L
Sbjct: 407 FDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERAL 466

Query: 472 NQYYAAKK 479
             Y + K+
Sbjct: 467 CAYKSMKE 474


>gi|315172271|gb|EFU16288.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1346]
          Length = 477

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 174/492 (35%), Positives = 249/492 (50%), Gaps = 52/492 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKA   A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKAFAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122
           + + Q+    I+             E LD +   +R       +++N        +RD+ 
Sbjct: 61  ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109

Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             +  +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P 
Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPV 164

Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                   +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD 
Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLQSYENKRDF 224

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P    TS LS +L  G LS R  W  L        +       ++  EL WR+FY  + +
Sbjct: 225 PYQDQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYS 278

Query: 297 FYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRL
Sbjct: 279 TFPQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRL 334

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP I
Sbjct: 335 RMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPII 394

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467
           Q K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  + 
Sbjct: 395 QSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSK 454

Query: 468 HHTLNQYYAAKK 479
             TL  Y A+K+
Sbjct: 455 KQTLFLYEASKE 466


>gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
 gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
          Length = 476

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 160/485 (32%), Positives = 258/485 (53%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     +++E + S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRK----GNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            + CK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E+   L    +    S++ + IWREF  +L+  YP 
Sbjct: 234 LAPYLSFGQISVKLMYHYLINKSNEKQCSLF---EQQVNSFIRQFIWREFSYYLLYHYP- 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 290 FTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 410 DGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|313620250|gb|EFR91701.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378]
          Length = 302

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 131/282 (46%), Positives = 171/282 (60%), Gaps = 13/282 (4%)

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           P F  GE+ A   L  F KE +  Y + RD+PA+  TS LS YL  G +S R  W  L++
Sbjct: 24  PAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHLSRYLRTGEISIRTVWQALQK 83

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
           E      +   G  ++  EL WR+FY  +   +P     +P       IEW  +    + 
Sbjct: 84  E------EATEGRATFEKELCWRDFYNMIYVSFPK-QKNEPIQENYRFIEWENNREFFKK 136

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W+ G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL+DWR GE+YF   L+D D 
Sbjct: 137 WQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDP 196

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFIR ++ EL ++P ++IH P  
Sbjct: 197 ASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIRKYVKELRDLPDKFIHQPEK 256

Query: 446 WLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
             +         L  +YPLPI+DHK+     + +Y  +K+ S
Sbjct: 257 MSETEQKEHGLILGKDYPLPIIDHKERRKLAIARYEFSKEHS 298


>gi|256762534|ref|ZP_05503114.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3]
 gi|256683785|gb|EEU23480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3]
          Length = 473

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 175/488 (35%), Positives = 249/488 (51%), Gaps = 46/488 (9%)

Query: 12  VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   ++
Sbjct: 1   MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEKR 126
            + Q+  +    Q        E LD +   +R       +++N        +RD+   + 
Sbjct: 58  RIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRF 109

Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
            +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P     
Sbjct: 110 FEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYTA 164

Query: 184 ---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P   
Sbjct: 165 EKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQD 224

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP- 299
            TS LS +L  G LS R  W  L        +       ++  EL WR+FY  + + +P 
Sbjct: 225 QTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFPQ 278

Query: 300 --SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMIT
Sbjct: 279 QKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMIT 334

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+
Sbjct: 335 ASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKK 394

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471
           FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL
Sbjct: 395 FDNDGQFIKKYVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTL 454

Query: 472 NQYYAAKK 479
             Y A+K+
Sbjct: 455 FLYEASKE 462


>gi|254504495|ref|ZP_05116646.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
           DFL-11]
 gi|222440566|gb|EEE47245.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
           DFL-11]
          Length = 478

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 251/483 (51%), Gaps = 30/483 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQ-WRQHGISARQSHFIYASLLQV 68
           +VW R DLR++DN AL+ A       V+ V+I  TP+Q   +H +      +++ SL  +
Sbjct: 4   IVWFRQDLRVSDNPALHEATRR--GPVLPVYILETPDQSGDEHPLGGASRWWLHHSLAAL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L   G+VF      +       +     +     +++NR YE + + RD  L++ L+
Sbjct: 62  KEDLP--GLVFLRGSARHL------IPELVQETGADAVYWNRCYEPHAIERDSALKESLK 113

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTG 186
             +I  KSF  S+L  P  +       YKVY+PF KA  Q +   D   LP PA I  T 
Sbjct: 114 TDLIDAKSFKASLLFEPWDVETKTGGPYKVYSPFWKA-AQKISVPD--PLPAPAEINFTA 170

Query: 187 PVTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                N+      P      +  + ++  G   A   L +F    +  Y ++R+ P +  
Sbjct: 171 YDRGDNLSDLELLPTKPNWAEGWEDIWQPGAAGAKDRLIEFLDHGLSGYGDKRNRPDLPN 230

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S+LSP+L  G +SP+Q W+  +            G   +L+E+ WREF  HL+  YP +
Sbjct: 231 VSRLSPHLHFGDISPKQVWSATQHATARKSSLSSDG-HKFLSEIAWREFSYHLLYHYPQL 289

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K + P  +   W +    L+ W+ G TG+P++DA MR+L   G+MHNR+RM+  SFL
Sbjct: 290 PE-KNWRPAFDAYPWRESEEDLKKWQTGLTGYPMVDAGMRELWHTGYMHNRVRMLAGSFL 348

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK L + W+ GE +F   L+D DLA+N+  WQW A +G D+ PYFRIFNP  QG +FDP 
Sbjct: 349 VKHLRLHWKHGEAWFRDTLVDADLANNSASWQWVAGSGADAAPYFRIFNPISQGPKFDPD 408

Query: 422 GTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475
           G ++R W+PEL  +PT+++     AP S L +  + L   YP PIVDH KA    L+ Y 
Sbjct: 409 GKYVRRWVPELAKLPTKHLFSPFEAPASVLSEAGVRLGETYPYPIVDHGKARQAALDGYE 468

Query: 476 AAK 478
             K
Sbjct: 469 DVK 471


>gi|196032015|ref|ZP_03099429.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
 gi|228928215|ref|ZP_04091256.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228946776|ref|ZP_04109081.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122697|ref|ZP_04251907.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
 gi|195994766|gb|EDX58720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
 gi|228660748|gb|EEL16378.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
 gi|228812900|gb|EEM59216.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228831262|gb|EEM76858.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 476

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 162/483 (33%), Positives = 257/483 (53%), Gaps = 28/483 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S    + E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGS----TQEKILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 --PSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              S +      P+ + ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+  YP   
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVN---SFIRQLIWREFSYYLLYHYPFTA 292

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLV
Sbjct: 293 Y-KPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411

Query: 423 TFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476
            +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y +
Sbjct: 412 EYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471

Query: 477 AKK 479
            K+
Sbjct: 472 MKE 474


>gi|300860779|ref|ZP_07106866.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
           TUSoD Ef11]
 gi|300849818|gb|EFK77568.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
           TUSoD Ef11]
 gi|315145075|gb|EFT89091.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2141]
 gi|315160408|gb|EFU04425.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0645]
          Length = 477

 Score =  260 bits (664), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 175/489 (35%), Positives = 251/489 (51%), Gaps = 46/489 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125
           + + Q+  +    Q        E LD +   +R       +++N        +RD+   +
Sbjct: 61  ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183
             +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P    
Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P  
Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS +L  G LS R  W  L        +       ++  EL WR+FY  + + +P
Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFP 281

Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                 + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMI
Sbjct: 282 QQKEEAIQEKF----RYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K
Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
           +FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   T
Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQT 457

Query: 471 LNQYYAAKK 479
           L  Y A+K+
Sbjct: 458 LFLYEASKE 466


>gi|119509710|ref|ZP_01628855.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
 gi|119465576|gb|EAW46468.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
          Length = 482

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 240/469 (51%), Gaps = 28/469 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S AKV+ VF   P+   +  ++  +  ++   L  +Q+
Sbjct: 6   LFWHRRDLRISDNTGLVAARERS-AKVVGVFCLDPQILSRDDVAPARVTYMMGCLQALQQ 64

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             +Q G  +   H      + +E + +         +F+N   E     RD+ +   L+ 
Sbjct: 65  RYAQVGSQLLILH-----GNPVEVIPALAKALNAKAVFWNWDVEPYSQTRDRTIIDILKS 119

Query: 130 RVICKSFD--DSVLLPPGSILNHALQMYKVYTPF--------RKALIQNLVQADLRSLPV 179
             I    +  D +L  P  I       Y VY+PF        +   ++ L  A   +   
Sbjct: 120 NSIEFLHENWDQILHAPDEIRTGTKSPYTVYSPFWKNWSSKPKAKSVETLQNAAGLTEAE 179

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             I     V P    R   + +     + P GE  A   L++F    +  Y EQR++P +
Sbjct: 180 QEIAKQAGVIPLPTARDLGFIWDGELSISP-GEAAAQERLQEFTDSAITEYQEQRNLPGV 238

Query: 240 QGTSQLSPYLSIGVLSPRQCWN-RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            GTS+LS  L  GV+  RQ W   L+ +      +  +   +W  EL WREFY+H M  +
Sbjct: 239 DGTSRLSAALKFGVIGIRQVWEATLEAQEFSRSEETAASIRTWQQELAWREFYQHAMYNF 298

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +  G  +    +   W  +    QAW +G TG+PI+DAAMRQLN +GWMHNR RMI A
Sbjct: 299 PELAEGA-YRDTFKNFPWQNNDEYFQAWCEGRTGYPIVDAAMRQLNEMGWMHNRCRMIVA 357

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDL+++ ++GE+YFM +L+DGDL++NNGGWQW+ S+G D  P  RIFNP  Q ++F
Sbjct: 358 SFLTKDLMINPQLGEKYFMQKLIDGDLSANNGGWQWSTSSGMDPKP-LRIFNPASQAQKF 416

Query: 419 DPQGTFIRHWLPELNNVPTQYI---HAPHSWLDKNDLSLNYPLPIVDHK 464
           D +G +IR W+ EL +V T+Y+     P   L     S+ YP PIVDHK
Sbjct: 417 DGEGEYIRQWVSELRSVDTEYLVTGKIPPLELQ----SIGYPAPIVDHK 461


>gi|301054669|ref|YP_003792880.1| deoxyribodipyrimidine photolyase [Bacillus anthracis CI]
 gi|300376838|gb|ADK05742.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
           str. CI]
          Length = 476

 Score =  259 bits (663), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 158/485 (32%), Positives = 258/485 (53%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VLPVYVHD----ETFSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +  ++    Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNTMEEILSLIE----QLGITAVYWNICYDPERLQFNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            + CK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E+   L    +    S++ + IWREF  +L+  YP 
Sbjct: 234 LAPYLSFGQISVKLIYHYLINKSNEKQCSLF---EQQVNSFIRQFIWREFSYYLLYHYP- 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 290 FTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 410 DGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|119477185|ref|ZP_01617421.1| putative photolyase [marine gamma proteobacterium HTCC2143]
 gi|119449548|gb|EAW30786.1| putative photolyase [marine gamma proteobacterium HTCC2143]
          Length = 477

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 168/491 (34%), Positives = 243/491 (49%), Gaps = 43/491 (8%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE---QWRQHGISARQSHFIYASLLQV 68
           +W R DLR+ DN AL AAC   +  +I V+I   +   QW+  G S    HF  A L   
Sbjct: 1   MWFRQDLRLADNPALCAACERGE--IIPVYILDDQGAGQWKMGGASRWWLHFALADL--- 55

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL Q   ++Q        D++  L     Q     + +NR YE   + RD  ++  L+
Sbjct: 56  NASLKQCLQIYQ-------GDALTILGDLADQTGAATVVWNRCYEPWRIGRDATIKTSLK 108

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLTG 186
              +  +SF+ S+L  P  +L      YKV+TP+ R+  +  +        P        
Sbjct: 109 ESGLDVQSFNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLSTVAPRRPMDPPKTLKVFVD 168

Query: 187 PVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                 +      P  A D      + I E  A   L +F   ++  Y E R+ PA Q  
Sbjct: 169 SGDSLELDNLNLLPKIAWDESMKACWDISEAAAHARLDEFVMNELQDYREGRNFPAKQNV 228

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL  G +SP   W R  E      I  +    ++++EL WREF  +L+  +P + 
Sbjct: 229 SRLSPYLHFGQISPNSAWYRAAE--AGAFINNEQSLDTFMSELGWREFSYYLLYHWPKLP 286

Query: 303 MGK-----PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                      PW      N     L AW+QG TG+P++DA MR+L + G+MHNR+RM+ 
Sbjct: 287 TENLQTRFDLFPWA-----NNTDEDLSAWQQGKTGYPLVDAGMRELYSTGYMHNRVRMVV 341

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFLVK+LL+ W  GEE+F   L+D DLASN+  WQW A  G D+ P+FRIFNP  Q ++
Sbjct: 342 GSFLVKNLLIHWHRGEEWFWDCLVDADLASNSASWQWIAGCGADAAPFFRIFNPITQSEK 401

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHH 469
           FD QG++IR ++PEL ++P +YIHAP  WL   +        + +NYP P+VD K +   
Sbjct: 402 FDKQGSYIRRYVPELKDMPEKYIHAP--WLAPAEVLAVAGVNIGINYPEPVVDIKVSRAR 459

Query: 470 TLNQYYAAKKQ 480
            L  +   K Q
Sbjct: 460 ALEAFAVTKIQ 470


>gi|148271713|ref|YP_001221274.1| deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829643|emb|CAN00559.1| Deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 508

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 172/509 (33%), Positives = 261/509 (51%), Gaps = 48/509 (9%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIA-VFIATPEQWRQHGISARQSHFI 61
           A  A    +VWLR+DLR+ DN AL+AA    +  V+  V     +  R  G +AR   ++
Sbjct: 17  AEEAHGPSIVWLRDDLRVADNPALHAAVERGEPIVVLYVLDEESDGIRPLGGAARW--WL 74

Query: 62  YASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           + SL ++ +SL + G  +V +  + ++       +D    +     + +NR+Y   E+  
Sbjct: 75  HMSLSRLAESLRELGSDLVLRRGKAADV------VDDLVREIGAGAVLWNRRYGGAEIAV 128

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  ++K L  R +  +SF  S+L+ P ++ N   + ++VYTPF KA  +   +   + LP
Sbjct: 129 DTAIKKDLGDRGLDVRSFQGSLLVEPWTVTNKQGEPFRVYTPFWKAAQER--EEPRKPLP 186

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI-----------GEQNALHILRKFCKEKV 227
            P   L     P   PR  D     + P  P            GE   L  L  F   ++
Sbjct: 187 APK-ELD---APREAPRSDDLDGWGLLPTKPDWAAGLRESCDPGEAAGLQRLEDFVHHEL 242

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y  QRD PA   TS+LS YL  G +SP Q W+R++      +   +  A  +L+EL W
Sbjct: 243 EDYAAQRDEPAAMTTSRLSAYLRWGEVSPFQVWHRIQRTRGKKVGGDEVNATKFLSELGW 302

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTI 346
           REF  HL+   P +   + F+P  +   W++ +   L AW++G TG P++DA MR L   
Sbjct: 303 REFSYHLLYHQPDLAT-RNFVPRFDAFPWDEPTDETLGAWQRGETGVPLVDAGMRALWKD 361

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G +HNR+RM+ ASFL+K+LL+DWR GE++F   L+D D A+N   WQW A +G D+ PYF
Sbjct: 362 GHLHNRVRMVVASFLIKNLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYF 421

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN----------- 455
           R+FNP +QG++FDP G +IR ++PEL + P   +H P  W    DL  +           
Sbjct: 422 RVFNPVLQGQKFDPSGEYIRSYVPELAHAPRDVVHEP--WKAMGDLVASAEDGADDSDDG 479

Query: 456 ----YPLPIVDHKKACHHTLNQYYAAKKQ 480
               YP PIVD K++    L  Y   K +
Sbjct: 480 GLAAYPAPIVDLKESRQRALAAYDEIKDR 508


>gi|296775719|gb|ADH42995.1| Deoxyribodipyrimidine photolyase [uncultured SAR11 cluster alpha
           proteobacterium H17925_38M03]
          Length = 466

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 157/476 (32%), Positives = 251/476 (52%), Gaps = 25/476 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + L WLR+D R   N  L  A    + +V+  ++     +        Q  ++  SL  
Sbjct: 4   KIGLFWLRDDFRFVKNHGLIEATTKHN-QVVVFYLYKKNIYNDQ---EAQKWWLSKSLSN 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKR 126
            +K L++  IV +  + ++F    + L    ++++   +++N+ YE + ++ D+ LL   
Sbjct: 60  FKKKLNELNIVLEIVETNSFKIFFDAL----IKKKDFXIYWNKVYEPDYLKFDEYLLNIF 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQAD--LRSLPVP 180
             + +  K F  + L     I       +KV+TPF     K   + +   +  ++     
Sbjct: 116 KNNNIYXKRFKGNALNEINEIKKGDGTPFKVFTPFWRTAEKFFSEKIPSKERVIKKCKNK 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                  ++   I    D+ F+  + ++   EQ+A   L+KF KE++  Y E R+ P+I+
Sbjct: 176 TNFFKNSISVEKILPEKDW-FKNFEKIWLPDEQHAFKELQKFIKERIVNYSEGRNFPSIK 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYP 299
           GTS+LSP++  G L     WN        +  KPK  G   +L E+ WREF   L+  +P
Sbjct: 235 GTSKLSPFIKFGQLHVETIWNEC------IKKKPKKIGTSKFLTEIGWREFNHSLINHFP 288

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            + +   +    +K  W K+S  L  WK+G TG+PI+DA MR+L + GWMHNR+RMI  S
Sbjct: 289 HM-LKSNYSKKFDKFPWEKNSKFLDKWKKGMTGYPIVDAGMRELYSTGWMHNRVRMIVGS 347

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK LL+DW+ GE+YF + LLD   ASN  GWQW A  G D+ PYFRIFNP +QG++FD
Sbjct: 348 FLVKHLLIDWKYGEKYFKNCLLDYSPASNVSGWQWVAGCGADAAPYFRIFNPILQGEKFD 407

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474
             G +++ W+PEL N+  ++IH P  +  +K  L  +YP PIV H++A    LN +
Sbjct: 408 KDGEYVKKWVPELKNLSKKFIHKPWEFNNEKFKLGRDYPYPIVKHEEAREKALNAF 463


>gi|315169001|gb|EFU13018.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1341]
          Length = 477

 Score =  259 bits (662), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 176/489 (35%), Positives = 249/489 (50%), Gaps = 46/489 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125
           + + Q+  +    Q        E LD +   +R       +++N        +RD+   +
Sbjct: 61  ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDICGFGAKRDQQAMR 112

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183
             +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P    
Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P  
Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS +L  G LS R  W    +E            F    EL WR+FY  + + +P
Sbjct: 228 DQTSHLSTFLRTGELSIRTIW----QELASASSSLSKETFK--KELAWRDFYNMIYSTFP 281

Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                 + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMI
Sbjct: 282 QQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K
Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
           +FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   T
Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQT 457

Query: 471 LNQYYAAKK 479
           L  Y A+K+
Sbjct: 458 LFLYEASKE 466


>gi|171319558|ref|ZP_02908656.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
 gi|171095203|gb|EDT40197.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
          Length = 500

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 161/500 (32%), Positives = 248/500 (49%), Gaps = 27/500 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A ++++  +VW R+DLR+TD  AL  A   S   ++ V++    +     +      +
Sbjct: 1   MSAKSSVAPAVVWFRDDLRVTDQPALMRAV-ASGRPLVCVYVDDTGEGAGRALGGAARWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D
Sbjct: 60  LHGSLATLDAALARHGGRLLLLRG----DARREIERVVHDTGAAAVYWNRRYAQPQRDAD 115

Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L+  L+ H +  +S + S+L  P  ++  A   ++V+T + +A+ ++   A    LP 
Sbjct: 116 AALKASLKAHGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRTVA--APLPA 173

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHI-LRKFCKEKV 227
           P      P       R       A+ P            +P  ++   H  L  F    +
Sbjct: 174 PERIAFHPWPAGVRERALALDTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHASL 233

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y + RD P    TS+LSP+L  G +SPRQ W+ ++           +GA  +L+EL W
Sbjct: 234 AGYADTRDRPGEPATSRLSPFLRFGNVSPRQVWHAVQGVAQAGGAACAAGAEKFLSELGW 293

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF   L+  +P++     F    + I W  D   L+AW++G TG+P++DA MR+L T G
Sbjct: 294 REFSHVLLYHFPALATDN-FRAQFDAIPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTG 352

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFR
Sbjct: 353 WMHNRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFR 412

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461
           IFNP  QG++FDPQG ++R W+PEL  +    IHAP              L L+YP PIV
Sbjct: 413 IFNPVAQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIV 472

Query: 462 DHKKACHHTLNQYYAAKKQS 481
           DH  A    L+      K S
Sbjct: 473 DHDGARRRALDALATLPKPS 492


>gi|13476703|ref|NP_108272.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
           MAFF303099]
 gi|14027464|dbj|BAB53733.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
           MAFF303099]
          Length = 477

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 170/488 (34%), Positives = 252/488 (51%), Gaps = 31/488 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYA 63
           A +  +V  R DLR+ DN AL AA       V+A++I   T +  R  G ++R   +++ 
Sbjct: 5   AQAPTIVLFRRDLRMGDNAALAAAAERG-VPVVALYILDETTKGLRAMGAASRW--WLHH 61

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +   L + G           D   + +D+         +F+NR+Y+ +EV  D  L
Sbjct: 62  SLAALGDLLRKAGANLFLAHGRTEDAVAKAIDASG----ANCVFWNRRYDPSEVAVDARL 117

Query: 124 EKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +  L+ + +   SFD ++L  P  +   +   YKV+TPF KA+   +   D    P    
Sbjct: 118 KAALREKGLTALSFDGALLHEPSLLKTGSGGFYKVFTPFWKAMADKVDVRDPIDTPGQID 177

Query: 183 RLTGPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              G +    +      P   D+ +   +   P GE+ A   L +F +  +  Y  QRD 
Sbjct: 178 GWRGELGGLRLDELDLLPSKPDWAYGLRETWTP-GEKGAQARLGQFIEHGLANYERQRDY 236

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P    TS+LSP+L+ G ++P Q        F  L     SG   +  E+ WREF  HL+ 
Sbjct: 237 PGQPSTSRLSPHLTFGEITPFQI-------FAALRRSKSSGTSKFRAEIGWREFSYHLLF 289

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P +  G+ F P  + + W  D   L+ W++G TG+PI+DA MR+L   GWMHNR+RMI
Sbjct: 290 HNPDLS-GRNFRPEFDAMSWRDDIRALRTWQRGLTGYPIVDAGMRELWRTGWMHNRVRMI 348

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+KDL++DWR GE++F   L+D D A+N   WQW A +G D  PYFRIFNP +QG+
Sbjct: 349 VASFLIKDLMIDWRHGEKWFWDTLVDADAANNPASWQWVAGSGADPAPYFRIFNPVLQGE 408

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHT 470
           +FDP G ++R  +PE++ +P +YIH    AP + L    + L   YP PIVDH  A    
Sbjct: 409 KFDPHGDYVRQHVPEISALPDRYIHRPWEAPAAVLKDKGIVLGKTYPNPIVDHGAARERA 468

Query: 471 LNQYYAAK 478
           L  Y + K
Sbjct: 469 LIVYQSLK 476


>gi|282899861|ref|ZP_06307822.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
 gi|281195131|gb|EFA70067.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
          Length = 484

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 177/481 (36%), Positives = 248/481 (51%), Gaps = 30/481 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   T   + L W R DLR +DN  L  A   +  KV+ VF   P    Q  I+  +  +
Sbjct: 1   MGYLTMSDLILFWHRRDLRTSDNTGLGVAREKT-KKVVGVFCLDPNILGQDDIAPARITY 59

Query: 61  IYASLLQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           +   L  ++   SQ G  +   H     D+ +  + +         +F+N   E     R
Sbjct: 60  MIGCLKSLESLYSQAGSQLLILH-----DNPVRAIPNLAEALEAKAVFWNWDVEPYAQIR 114

Query: 120 DKLLEKRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQ----- 171
           D+ +   L+ R I   +   D +L  P +IL+ A   Y VYTPF +K   Q  V+     
Sbjct: 115 DRDVTLALKTRGIETLEKNWDQLLHSPDTILSGAGTPYTVYTPFWKKWHSQPKVEPIEIL 174

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           A+  +L      +        +P   D  F  + + +   GE  A   L  F    +  Y
Sbjct: 175 ANCENLTAREEEIAEKSGVIKLPTARDLGFIWSGELILEPGEVAAWERLTDFLDCAIDEY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-----WLNEL 285
            E+R+ PAI GTS LSP L  GV+  R  W + +E    LL    S  FS     W  EL
Sbjct: 235 EEKRNYPAIDGTSLLSPALKFGVIGIRTIWQKTQE----LLAISNSQEFSNGIITWQKEL 290

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WREFY+H M  +P +  G  +    +   W+ +    QAW +G TG+PI+DAAMRQLN 
Sbjct: 291 AWREFYQHAMYHFPELAEGA-YRDVFKNFPWSDNQEHFQAWCEGKTGYPIVDAAMRQLNE 349

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GWMHNR RMI ASFL KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D  P 
Sbjct: 350 TGWMHNRCRMIVASFLTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP- 408

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHK 464
            RIFNP+ Q ++FD  G +IRHW+ EL +V T+Y I    + L++   S+ YP  IVDHK
Sbjct: 409 LRIFNPSSQAQKFDSDGEYIRHWVGELASVETEYLIGGNITPLERQ--SVGYPTSIVDHK 466

Query: 465 K 465
           K
Sbjct: 467 K 467


>gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
           29413]
 gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
           29413]
          Length = 479

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 163/473 (34%), Positives = 246/473 (52%), Gaps = 34/473 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRITDN  L  A  +S +KV+ VF   P    +  ++  +  ++  SL ++Q+
Sbjct: 6   LFWHRRDLRITDNIGLATARQHS-SKVVGVFCLDPNILERDDVAPVRVTYMIGSLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      +     D ++ +           +F+N   E     RD+ +   L+ +
Sbjct: 65  RYVQAGSQLLILRG----DPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIATLKDK 120

Query: 131 VI-CKSFD-DSVLLPPGSILNHALQMYKVYTPFRKAL--------------IQNLVQADL 174
            I C + + D +L  P  I + +   Y VYTPF K                ++ L +A+ 
Sbjct: 121 GIQCLTHNWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLHNVEGLTEAEQ 180

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                  ++     T  ++  F+D      D +   GE  A   L +F  + +  Y EQR
Sbjct: 181 ELAQKAGVKAL--PTAKDLGFFWD-----ADLIIAPGEAAAQAKLAEFTAKAITEYQEQR 233

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRH 293
           + P + GTSQLS  L  GV+  R  W    E   +   +  + +  +W  EL WREFY+H
Sbjct: 234 NFPGVNGTSQLSAALKFGVIGIRTVWQTTLEALENSRSEETTTSIRTWQQELAWREFYQH 293

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            M  +P +  G  +    +   W  +    QAW +G TG+PI+DAAMRQ+N  GWMHNR 
Sbjct: 294 AMYNFPELADGA-YRATFKNFPWETNEEHFQAWCEGKTGYPIVDAAMRQMNESGWMHNRC 352

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL KDLL++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  
Sbjct: 353 RMIVASFLTKDLLINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPAS 411

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465
           Q ++FDP   +IR W+PEL ++ T+Y +    + L+++  ++ Y  PIVDH+K
Sbjct: 412 QSQKFDPDAEYIRQWVPELRSMDTEYLVTGKITPLERH--AVGYVKPIVDHQK 462


>gi|148256271|ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
 gi|146408444|gb|ABQ36950.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
          Length = 481

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 162/486 (33%), Positives = 245/486 (50%), Gaps = 40/486 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R  LR++D+ AL+AA   S A VI  ++   E      +      ++  SL  +Q 
Sbjct: 7   VVWFRESLRLSDHPALHAAA-TSGAPVICCYVYDTESAALRPLGGASRWWLAQSLRALQD 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G+     +      S + +     +   + +++N   +         +E  L   
Sbjct: 66  ELDALGVKLVIRRGP----SAKAISELAREASTSAVYWNDVAQTGPRAVAAEVEAALDAI 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V  + F D +L+ P  +     +  +V+TPF K ++   +    + LPVP +RL+ P  
Sbjct: 122 GVKSRVFADDLLIDPAELRGKDGRGPRVFTPFWKRVLA--LGDPPKPLPVP-VRLSSPSG 178

Query: 190 PSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            +++         A++P  P            GE+ A   L KF +  V  Y   RD P 
Sbjct: 179 VASL----TVDKLALEPTSPDWAGGLRTTWRAGERAAQARLAKFLETTVRGYAADRDRPD 234

Query: 239 IQGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           I+ TS+LSP+L  G +SPRQ W+  R   E      +   G   +L+EL WREF RHL+ 
Sbjct: 235 IEATSRLSPHLRFGEISPRQIWHAARFAAEQQPAFAR---GIDKFLSELGWREFSRHLLF 291

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P +   +   P  +   W++D+  L+AW++G TG+PI+DA MR+L   G MHNR+RM+
Sbjct: 292 NNPDLAT-RNLQPSFDAFPWSQDAAALRAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMV 350

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS LVK LL+DWR+GE++F   L+D D  SN   WQW A +G D+ PYFR+FNP +QG+
Sbjct: 351 AASLLVKHLLIDWRLGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGE 410

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHKKACH 468
           +FD  GT++R W+PEL  +P   IH P  W  K          L  +YP P+VDH+    
Sbjct: 411 KFDSSGTYVRRWVPELARLPAALIHQP--WAAKPLELAEAGVVLGRSYPAPVVDHRHGRE 468

Query: 469 HTLNQY 474
             L  Y
Sbjct: 469 RALAAY 474


>gi|292657024|ref|YP_003536921.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
 gi|291372710|gb|ADE04937.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
          Length = 484

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 158/492 (32%), Positives = 237/492 (48%), Gaps = 33/492 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R DLR+ DN+ L  A       V  +F+   +     G  A +  ++  +L ++
Sbjct: 1   MQLHWHRRDLRVADNRGLATAAEAG--PVAPLFVFDRDVLDHAG--APRVRYLLDALAEL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +  ++G      +     D    + +        +  +   Y      RD  +   L 
Sbjct: 57  RGAYQERGSDLLVARG----DPRTVVPAVAAAFDAERAVWGIDYSGLARERDADVRLALD 112

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYT-------------PFRKALIQNLVQADL 174
              + +    D++  PPGSI  +A   Y VYT             P+ +    +LV  D 
Sbjct: 113 DAGVAREPVHDAIFHPPGSITTNAGDTYSVYTYFWKKWRDRDKPDPYPEPDADDLV--DA 170

Query: 175 RSLPVPAIRLTG-----PVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVY 228
            +L   A  LT       +    +P   D  F+       P G + A   L  FC + +Y
Sbjct: 171 ATLESAAEDLTNGDAEFDIAVGGLPTISDLGFEEPSASVQPAGTEAARERLSAFCADAIY 230

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y + RD P    TS+LS  L  G +  R+ +         +  +       + ++L WR
Sbjct: 231 RYADDRDYPTRDATSRLSTDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWR 290

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EFY H++  +P+V   + +  + E I W  D   L AWK G TG+PI+DA MRQL    +
Sbjct: 291 EFYAHVLRGHPNVVT-ENYKEYEEDIAWRDDDEELAAWKAGETGYPIVDAGMRQLREEAY 349

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RMI ASFL KDLL DWR G  +F   L D D A++NGGWQWAASTG D+ PYFRI
Sbjct: 350 MHNRVRMIVASFLTKDLLCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRI 409

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKA 466
           FNP  QG+R+DP G +I+ ++PEL++V    IH  H    L++  L+ +YP PIVDH + 
Sbjct: 410 FNPMTQGERYDPDGEYIKRYVPELSDVTANTIHEWHELTDLERERLAPDYPEPIVDHAER 469

Query: 467 CHHTLNQYYAAK 478
               ++ + AA+
Sbjct: 470 RERAISMFEAAR 481


>gi|297180123|gb|ADI16346.1| deoxyribodipyrimidine photolyase [uncultured bacterium HF130_01F24]
          Length = 478

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 164/494 (33%), Positives = 252/494 (51%), Gaps = 46/494 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL  A   S  +V+ ++I   +      +      ++  SL  + +
Sbjct: 8   IVWFRQDLRLQDNPALEFAA--SVGEVLPIYIVDEKNAADWRLGRASQWWLNESLRSLNE 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
           S++    +++        D +  ++    +  ++ +F+NR YE  +V RDK ++  ++  
Sbjct: 66  SMNGALCLYR-------GDPLGIIEKLITEHSISNIFWNRCYEPWQVLRDKTIKSEVRKF 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-------VPAI 182
               +SF+  +L  P  I       YKV+TPF K       Q+ L+  P       V  I
Sbjct: 119 GAKARSFNGFLLNEPWEIAKSDGTPYKVFTPFYK-------QSRLKGTPREASIDYVSKI 171

Query: 183 RLTG------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           R          +   N+    D+  +      P GE+    +L+ F +  +  Y   RD 
Sbjct: 172 RFVSNSKKNREIDSLNLLNENDWSTEMASRWTP-GERGGEQVLKLFLERGLCNYKIGRDF 230

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P  +  S+LSPYL  G LSP   W+++    V   I+ ++  F    EL+WREF   L+ 
Sbjct: 231 PDKEAVSRLSPYLHFGELSPNYVWHKVNNFAVLENIETQAEHFH--RELVWREFSYSLIH 288

Query: 297 FYPSVC---MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++P +    + + F    +   W K+   ++ W+ G TG+P+IDA MR+L + G+MHNR+
Sbjct: 289 YFPDLTYRNLNRRF----DDFPWKKNDQFMKKWRTGMTGYPLIDAGMRELASTGYMHNRV 344

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFLVK+LL+DWR G E+F   L+D DLA+N+  WQW A +G D+ PYFRIFNP  
Sbjct: 345 RMITASFLVKNLLIDWRNGAEWFWDSLIDADLANNSCSWQWVAGSGADAAPYFRIFNPVT 404

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKAC 467
           Q K+FDP   +IR W+ EL   P +YIH    AP S L    + L+  YP  IVD K + 
Sbjct: 405 QSKKFDPDAKYIRRWITELEKCPNKYIHDPSSAPESELQHFGIKLDQTYPSAIVDLKTSR 464

Query: 468 HHTLNQYYAAKKQS 481
              L  Y + K +S
Sbjct: 465 EAALRAYQSLKGRS 478


>gi|220913214|ref|YP_002488523.1| deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus
           A6]
 gi|219860092|gb|ACL40434.1| Deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus
           A6]
          Length = 475

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 172/483 (35%), Positives = 245/483 (50%), Gaps = 37/483 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVWLR+DLR+ DN AL  A H   A +  V++   E      +      +++ SL  +
Sbjct: 7   TSLVWLRDDLRLDDNPALSEAAHLG-APMTVVYVLDEESPGVRPLGGASRWWLHHSLAAL 65

Query: 69  QKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEK 125
              L  KG  +V +  + ++       + S   Q     LF+NR+Y   E   D  L E 
Sbjct: 66  AAVLEAKGSRLVLRRGKAADV------ISSLAAQTHAGHLFWNRRYGGPERDIDAGLKEW 119

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------LP 178
              + +   SF  ++L  P +I   A   YKVY+PF +A    L   D+R        LP
Sbjct: 120 AAGNGIEASSFQANLLFEPWTIKTGAGGPYKVYSPFWRAC---LAAGDIRDPLDIPKDLP 176

Query: 179 VPAIRLTG-PVTPSN-----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
            PA    G P + S      +P   D+     +   P GE+ A+  L  F    +  Y  
Sbjct: 177 EPAASGRGLPASDSLGSWKLLPTSPDWSGGLAETWVP-GEKGAVDRLTDFLDGPIEDYGT 235

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+IP  +GTS+LSPYL  G +SP + W  ++       +    G F   +EL WREF  
Sbjct: 236 GRNIPGTEGTSRLSPYLRFGEVSPFRVWREIRRRHP-RQVPADVGIFR--SELGWREFNW 292

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           HL+   P +   + F P  EK EW   S   L AW+QG TG+P++DA MRQL   GWMHN
Sbjct: 293 HLLYHNPELAT-RSFRPDFEKFEWASLSRKELAAWQQGRTGYPLVDAGMRQLWQTGWMHN 351

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM  ASFLVK+LL DWR+GE++F   L+D D A+N   WQW A +G D+ PY+RIFNP
Sbjct: 352 RVRMAAASFLVKNLLTDWRVGEQWFWDTLVDADAANNPANWQWVAGSGADASPYYRIFNP 411

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
             Q K+FD  G ++R ++PE+  +  + IH P  W  + D    YP P+V+  ++    L
Sbjct: 412 VTQSKKFDAGGDYLRRFIPEIAGLEGKAIHEP--WTAEPD---GYPQPLVELPESRERAL 466

Query: 472 NQY 474
           + Y
Sbjct: 467 DAY 469


>gi|161522875|ref|YP_001585804.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
           17616]
 gi|189348291|ref|YP_001941487.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
           17616]
 gi|160346428|gb|ABX19512.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
           17616]
 gi|189338429|dbj|BAG47497.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
           17616]
          Length = 505

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 164/492 (33%), Positives = 246/492 (50%), Gaps = 53/492 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +VW R+D R+ DN AL   CH   S   V+ V++  P    +  +   Q  +++ SL ++
Sbjct: 14  VVWFRDDQRLGDNPAL---CHAVASGHPVVCVYVHDPAPSIRRPMGGAQRWWLHESLGKL 70

Query: 69  QKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +LS  G   IV +        D  E +  + +     K+ +NR+Y       D  +++
Sbjct: 71  DDALSALGGSLIVLR-------GDEHEAIRDFAVGIGAAKVVWNRRYSKAHTGTDASIKQ 123

Query: 126 RLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L  R I  S F+  +L  P ++L      Y+V++ + +A  ++ +           I  
Sbjct: 124 DLVGRGIAVSTFNGHLLHEPWTVLTREGLPYQVFSAYWRAACRDDLSPPPPLPAPSRIAF 183

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKVYYYVEQ 233
             PV  +  P         + P  P            GE+ A   L  F +  +  Y + 
Sbjct: 184 F-PVPHNVTPHVCTLRALGLQPTAPDWASGLRLTWRCGEEAARQRLDAFLEHSLRDYADM 242

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL-------LIKPKSGAFS-WLNEL 285
           RD+PA   TS+LSPYL  G +S RQ W         +       L  P+SG  + +L+E+
Sbjct: 243 RDLPAAHATSRLSPYLRFGNISVRQVWYAASSAASAMQRTRKADLGDPQSGPLNKFLSEI 302

Query: 286 IWREFYRHLMAFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            WREF  HL+  +P    V   + F    + + W  D + L+ W+ G+TG+P++DA MR+
Sbjct: 303 GWREFSYHLLYHFPPLHQVNFRRQF----DSMPWRDDPNALRKWQTGHTGYPLVDAGMRE 358

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GWMHNR+RM+ ASFL K LL+DWR GE +F   L+D D ASN   WQW + +G D+
Sbjct: 359 LWHTGWMHNRVRMVVASFLSKHLLIDWREGEAWFWDTLVDADEASNPASWQWVSGSGADA 418

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSL 454
            PYFRIFNP +QG++FDPQG + RHW+PEL+ +  + IHAP  W    +        L  
Sbjct: 419 APYFRIFNPVLQGQKFDPQGEYTRHWVPELSKMSAEKIHAP--WTASAEQLHDACVSLGR 476

Query: 455 NYPLPIVDHKKA 466
            YP PIVDH+ A
Sbjct: 477 TYPFPIVDHQAA 488


>gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
 gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
          Length = 476

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 159/485 (32%), Positives = 256/485 (52%), Gaps = 32/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +   + V+  T        I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGEVLPLYVYDET------FSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +    S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNILEEIL----SLIKQLGITAVYWNICYDPERLQFNQKVKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----LT 185
            + CK F+  +LL P  I       YKV+TPF  A  + ++   +    V +I+    L 
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISK--VQSIKWGSSLP 173

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S 
Sbjct: 174 ASLSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSM 233

Query: 245 LSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           L+PYLS G +S +  +    N+  E+   L    +    S++ + IWREF  +L+  YP 
Sbjct: 234 LAPYLSFGQISVKVMYHYLINKSNEKQCSLF---EQQVNSFIRQFIWREFSYYLLYHYP- 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASF
Sbjct: 290 FTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD 
Sbjct: 350 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL ++P +YIH    AP   L K ++ L   YPLP+VDHK A    L  Y
Sbjct: 410 DGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 469

Query: 475 YAAKK 479
            + K+
Sbjct: 470 KSMKE 474


>gi|56807956|ref|ZP_00365772.1| COG0415: Deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           M49 591]
          Length = 381

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 153/387 (39%), Positives = 214/387 (55%), Gaps = 34/387 (8%)

Query: 98  CLQQRVTKL-------FYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150
           C +Q +T+L       F   +     +R  K  +   ++ +   ++ D  L     I+N 
Sbjct: 8   CFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQ 67

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR----FFDYPFQAIDP 206
           + Q YKV+TP+ +   QN  +     + +   R     TP ++ R    F D  +Q +  
Sbjct: 68  SGQPYKVFTPYYRXW-QNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKYQDVAT 126

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
                +Q     L +F ++++  Y   RD PA  GTS+LSP+L IG +  R  ++ +++ 
Sbjct: 127 FDEASKQ-----LNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVRQ- 180

Query: 267 FVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
                  P S G  ++L EL WR+FY  +   YP     +P      +IEW  +    Q 
Sbjct: 181 ------APNSLGQATFLKELAWRDFYNMVYVAYPDQKT-QPIQKAFSQIEWVNNPDWFQL 233

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           WK+G TG+PI+DAAM QL   GWMHNRLRMI ASFL KDLL DWR+GE+YF  QL+D D 
Sbjct: 234 WKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLIDYDA 293

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP+G FI+ +LP+L +VP +Y+H P  
Sbjct: 294 ASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPWK 353

Query: 446 WLDKN-------DLSLNYPLPIVDHKK 465
            + KN        +  +Y  PIVDH K
Sbjct: 354 -MPKNLQESVSCIIGTDYAQPIVDHAK 379


>gi|323480758|gb|ADX80197.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62]
          Length = 477

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 174/489 (35%), Positives = 251/489 (51%), Gaps = 46/489 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125
           + + Q+  +    Q        E LD +   +R       +++N        +RD+   +
Sbjct: 61  ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183
             +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P    
Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P  
Sbjct: 168 AEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQ 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS +L  G LS R  W  L        +       ++  EL WR+FY  + + +P
Sbjct: 228 DQTSHLSTFLRTGELSIRTIWQELAS------VPSSLSKETFKKELAWRDFYNMIYSAFP 281

Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                 + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMI
Sbjct: 282 QQKEEAIQEKF----RYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMI 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K
Sbjct: 338 TASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSK 397

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
           +FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIV++  +   T
Sbjct: 398 KFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVNYASSKKQT 457

Query: 471 LNQYYAAKK 479
           L  Y A+K+
Sbjct: 458 LFLYEASKE 466


>gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
 gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
          Length = 476

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 163/490 (33%), Positives = 254/490 (51%), Gaps = 42/490 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFPMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     ++ E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLETLGSTLIIRK----GNTQEEIFSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            ++CK F+  +LL P  I       YKV+TPF  A  + ++       P P  R+     
Sbjct: 116 GIVCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVI-------PKPISRVQSIKW 168

Query: 190 PSNIPRFFDYPFQAIDPMFP----------IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +++P         + P  P            E+ A    +KF   K+  Y E RD P  
Sbjct: 169 GNSLPASLFVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQ 228

Query: 240 QGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              S L+PYLS G +S +  +    N+  E    L  K  +   S++ +LIWREF  +L+
Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVN---SFIRQLIWREFSYYLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP   + KP     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM
Sbjct: 286 YHYP-FTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARM 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG
Sbjct: 345 AVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQG 404

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FD  G +IR W+PEL ++P +YIH    AP   L K ++ L   YP PIVDHK A   
Sbjct: 405 EKFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPFPIVDHKAARER 464

Query: 470 TLNQYYAAKK 479
            L  Y + K+
Sbjct: 465 ALCAYKSMKE 474


>gi|114707205|ref|ZP_01440103.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
 gi|114537401|gb|EAU40527.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
          Length = 492

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 236/484 (48%), Gaps = 28/484 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VWLR+DLR+ DN AL  A   ++  ++ + +   E      +      +++ SL     
Sbjct: 20  VVWLRDDLRLDDNPALALAAE-TNRPIVPLVVLDEESDGVRALGGAHKWWLHHSLESFAS 78

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL  KG      +    D  ++ ++    +   + LF+NR+Y+      D  + + L  +
Sbjct: 79  SLRGKGSRLTLRRGKAKDQVLDVIE----KTGASALFFNRRYDQASRAVDDAIGEALGDQ 134

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V  + F  ++L  P ++   +   YKV+TPF     + + ++  R    P   L  P T 
Sbjct: 135 VSVERFTANLLHDPENVETTSGGYYKVFTPF----WRKVSESGPRDPIDPPDGLKQPDTF 190

Query: 191 SNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                  D+      P         +  GE+ A      FC + +  Y + R+ P    T
Sbjct: 191 PQSDDLEDWELLPTKPDWSGGIADFWTPGEKAAHDRFETFCDDLLSDYHKGRERPYADDT 250

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S++SPYL  G +SP + W+  +         P     ++L EL+WR+F  HL+ F+    
Sbjct: 251 SRMSPYLRWGEISPYRLWHTAQAYANRRKTVPDEAIRTFLQELVWRDFNYHLL-FHFGPL 309

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             K F    +   W      L+AW+ G TG+PI+DA MRQL   GWMHNR+RMI  SFL 
Sbjct: 310 ADKNFNDRFDNFSWRSSKKDLKAWQNGLTGYPIVDAGMRQLWKTGWMHNRVRMIVGSFLT 369

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE +F   L+DGD+ASN   WQW    G D+ P+FRIFNP  Q +RFD  G
Sbjct: 370 KDLLIDWRDGERWFWDTLVDGDIASNTAQWQWIGGAGADAQPFFRIFNPITQSERFDKNG 429

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTLNQY 474
            +IR ++PEL  +P ++IHAP  W    D        L   YP P+VDH +A    L+ Y
Sbjct: 430 AYIRQFVPELKEMPDKHIHAP--WKADKDVLEKAGVKLGETYPEPLVDHSEARDRALSAY 487

Query: 475 YAAK 478
              K
Sbjct: 488 DEVK 491


>gi|238502227|ref|XP_002382347.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           flavus NRRL3357]
 gi|220691157|gb|EED47505.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           flavus NRRL3357]
          Length = 572

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/422 (35%), Positives = 229/422 (54%), Gaps = 20/422 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  VH  W ++DLR+ DN+AL   Y         +IA++I +PE    H  S  +     
Sbjct: 130 AAVVH--WFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTL 187

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-K 121
            +L Q++  L +  I        +  D  + +   C +     LF N +YE++E+RR+ K
Sbjct: 188 RTLEQLKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAK 247

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQN----LVQAD 173
           L+   +++ +      D+ ++PPG + +   + Y VY+P+ ++    L+ N     V  +
Sbjct: 248 LVRLCVENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEE 307

Query: 174 LRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
             S P  A ++   +  S +P      R  D   +    ++P GE   L  L  F +EK 
Sbjct: 308 PGSNPGNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKA 367

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y + R+  + Q TS LSPY + G LS R    + K+   + L + + G  SW++E+ W
Sbjct: 368 TAYDDMRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAW 427

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+FY+H++  +P +CM K F P    +EW  ++   +AW +G TGFPI+DAAMRQ+ +  
Sbjct: 428 RDFYKHVLVRWPFICMNKCFKPEFTDLEWEYNTDYFKAWCEGRTGFPIVDAAMRQMKSSA 487

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNR RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFR
Sbjct: 488 WMHNRSRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFR 547

Query: 408 IF 409
           IF
Sbjct: 548 IF 549


>gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
 gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           8102]
          Length = 477

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 170/468 (36%), Positives = 239/468 (51%), Gaps = 26/468 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQSH--FIYASLL 66
           L W R DLR+TDN  L AA   S A V  V++  P+     +H +    +   F+  SL+
Sbjct: 7   LFWHRRDLRLTDNLGLAAAAAISPA-VTGVYVLDPQVISPSEHLLPMAPARLWFLIESLI 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+     G      +     D ++ L     +     + +NR  E     RD+ + +R
Sbjct: 66  ELQQRWRDAGSRLLVVE----GDPVQLLPQLAERIAAEAVVWNRDVEPYARERDRQVAQR 121

Query: 127 LQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IR 183
           LQ        D D +L+ P  +       Y+VY PF +     +      ++P PA  + 
Sbjct: 122 LQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVQAKQPVTVPAPAGLVD 181

Query: 184 LTGPVTPSNIP---RFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           L     PS  P   R   + F+  +  P  P GE  A+  L  FC   ++ Y   R+ P 
Sbjct: 182 LDPAAVPSGEPLMARRDSHGFKGTELCPCRP-GEAAAMQQLTSFCDGALFGYEPDRNFPG 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAF 297
           + GTS LS  LS+G LSPRQ W+  +E       + +  A + W  EL WREFY+  +  
Sbjct: 241 VVGTSYLSAALSVGTLSPRQAWSAAQEAREQARSEEQLHAIAVWEQELCWREFYQQALFH 300

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +  G P+     +  W  +      W++G TG PIIDAAMRQLN  GWMHNR RMI 
Sbjct: 301 FPELSDG-PYREQWRRFPWENNEDWFDFWREGQTGMPIIDAAMRQLNQTGWMHNRCRMIV 359

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q  +
Sbjct: 360 ASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQASK 418

Query: 418 FDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHK 464
           FD  G +IR W+PEL +V T+  +      L++ D    YP P+V+HK
Sbjct: 419 FDAAGDYIRQWVPELRHVNTKDLLSGEIGALERRD----YPEPLVNHK 462


>gi|238028072|ref|YP_002912303.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
 gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
          Length = 489

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/501 (32%), Positives = 248/501 (49%), Gaps = 36/501 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A +     LVW R+DLR+TDN AL  A   S   ++ V++   +  R  G + R   +
Sbjct: 3   LSADSQAQPALVWFRDDLRVTDNPALARAAE-SGRPLVCVYVFERDGTRPLGGAVR--WW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L  +   L+ +G      +     D  E + +   +     +++NR+Y+      D
Sbjct: 60  LDGALRSLDAKLAAQGGGLVVLEG----DERETIAALAGELGAGAVYWNRRYDGLARETD 115

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRS-- 176
             L++ L+   I  +SF+ ++L  P  I   +   ++V+T + R A     + A L    
Sbjct: 116 AALKRSLKEAGIEVESFNGALLHEPWEIRTGSGGAFQVFTAYWRAARAAGELPAPLAEPA 175

Query: 177 ------LPVPAIRLTGPVTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
                 LP    R    +    +    P +     +A +P     E+  L  L  F  ++
Sbjct: 176 KWRFHRLPEALARRATRIDALGLLPVRPDWAGGLREAWEPS----EEGGLARLEAFLDKQ 231

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           +  Y + RD P    TS+LSPYL  G LS RQ W+  +    +      +    +L+EL 
Sbjct: 232 IRGYGDARDRPDRPATSRLSPYLRFGQLSARQVWHAAQAAGREGGAAVAADIEKFLSELG 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF   L+  +P + M + +    + + W  D     AW +G TG+P++DA MR+L   
Sbjct: 292 WREFNTSLLYHFPELPM-RNYRDRFDAMPWRSDEAAFAAWCRGRTGYPLVDAGMRELWAT 350

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+RM+TASFL+K LL+DWR GE +F   L+D D+A+N+  WQW A +G D+ PYF
Sbjct: 351 GWMHNRVRMVTASFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGSGADAAPYF 410

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPL 458
           RIFNP +QG++FDP G ++R W+PEL  +P   IH P  W  K          L   YP 
Sbjct: 411 RIFNPVMQGRKFDPDGAYVRRWVPELAGLPADAIHEP--WRAKPVVLEAAGVVLGRTYPA 468

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
           PIVDH  A    L    A K+
Sbjct: 469 PIVDHDAARKRALGALEATKR 489


>gi|119715025|ref|YP_921990.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614]
 gi|119535686|gb|ABL80303.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614]
          Length = 453

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 157/471 (33%), Positives = 231/471 (49%), Gaps = 36/471 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN AL  A   +D  V+ +F+  P  W   G + R   ++ ASL  +  
Sbjct: 8   VLWFRRDLRLADNPALVEAA--ADGPVLPLFVLDPVLWGPAGAARRA--YLGASLRALDA 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL ++G      +     D    +          ++     +     RRD  +E+ L   
Sbjct: 64  SLRERGTRLSVVRG----DPARLVPRAARAVGAARVHVAADFGPYGSRRDGAVEQALTGA 119

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                       + PG + N A   Y+V+TPF +A  ++  +      PV     TG + 
Sbjct: 120 GAELVRTGSPYAVAPGRVTNTAGAPYRVFTPFHRAWAEHGWRG-----PVGVPEGTGWL- 173

Query: 190 PSNIPRFFDYPFQAIDPMFPIG------EQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                R  +   +  DP  P G       + A         ++V  Y E RD PA+ GTS
Sbjct: 174 -----RLAEGTAEIPDPALPDGLTLPAAGEAAARRRWAEFLDRVDEYAEDRDRPAVDGTS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           Q+S +L  G + PR           DL  +  +GA ++  EL WREFY  ++   P    
Sbjct: 229 QMSAHLKWGEIHPRTM-------LADLARRRGAGAATYRKELAWREFYADVLHARPETAR 281

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +   P   ++ +++    L AW+ G TGF ++DA MRQL   GWMHNR+RMITASFLVK
Sbjct: 282 -QYLRPEFARMRYDEPGEHLDAWRHGRTGFSVVDAGMRQLRATGWMHNRVRMITASFLVK 340

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL ++W++G  +F+  L+DGDLASN  GWQW A  G D+ PYFR+FNPT QG+RFDP+G 
Sbjct: 341 DLHLEWQLGARHFLRWLVDGDLASNQHGWQWTAGCGTDAAPYFRVFNPTAQGRRFDPRGE 400

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           ++R W+PEL +     +  PH        ++ YP PIVDH       L ++
Sbjct: 401 YVRRWVPELAD--PDVVADPHDPSPSERQAVGYPEPIVDHAAERREALGRW 449


>gi|301167819|emb|CBW27403.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus
           SJ]
          Length = 434

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 167/473 (35%), Positives = 229/473 (48%), Gaps = 48/473 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V + W R DLR+ DN  LY A  NS   V+ +FI       +      +  FI+  L  +
Sbjct: 8   VSIFWFRRDLRVEDNIGLYHAL-NSSFPVLPIFIFDKNILNKLERDDSRVSFIHECLQNL 66

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            +   +  G +  ++     +   E  +S+ +Q+    ++ N  YE   + RDK +E  L
Sbjct: 67  SEKFRKYDGDLLTFYNSPK-NAWKEIFESFDVQE----VYTNEDYEPYALSRDKSIEDYL 121

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I  +S+ D  +     IL      Y VYTP++   ++ L  +DL S+         
Sbjct: 122 TRKGIKFQSYKDQCIFSKFDILKKDGTPYTVYTPYKNKWLETLQPSDLASIKSEKNLSKI 181

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               S I       F      FP        I           Y E RD+P+I GTS L 
Sbjct: 182 YKFKSEIHSLMSLGFTKSHISFPKRIIKKKIITN---------YHETRDLPSINGTSLLG 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR+           L         +WLNELIWREF+  ++  +P V +  P
Sbjct: 233 VHLRFGTIGPRK-----------LASIAYHTNKTWLNELIWREFFSQILFHFPHV-VNAP 280

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    E IEW  +    + W +G TGFP++DA MR+LN  G MHNR+RM+ ASFLVKDLL
Sbjct: 281 FREKYESIEWRNNKEEFKLWCEGRTGFPLVDAGMRELNQTGHMHNRVRMLVASFLVKDLL 340

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF  +LLD DLASNNG WQWAA TG D+ PYFRIFNPT Q K+FDP   +++
Sbjct: 341 IDWRWGEKYFAKKLLDFDLASNNGNWQWAAGTGCDAAPYFRIFNPTTQIKKFDPDLIYVK 400

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            W+PE                     S NY   IVDHK+A H  +  Y  A K
Sbjct: 401 KWVPEYG-------------------SDNYTEEIVDHKEAYHRAIFTYNKALK 434


>gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454]
 gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 522

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 166/492 (33%), Positives = 250/492 (50%), Gaps = 40/492 (8%)

Query: 11  LVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           +VW R+D R+ DN AL YA         + V    P   R  G + R   +++ SL  + 
Sbjct: 24  VVWFRDDQRLADNPALEYATATGHPVVCVYVHDPAPRNTRPPGAAGRW--WLHESLRALN 81

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L   G        S      + ++++ +     K+ +NR+Y   +   D  ++  L+ 
Sbjct: 82  AALVALGGELTVLHGSE----SQAIEAFAVAIGAIKVCWNRRYSAPQRETDTAIKTALKE 137

Query: 130 RVICK-SFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQAD------LRSLPVP- 180
           R I   +F+  +L  P ++     + ++V++ + R A  Q   +A       +   PVP 
Sbjct: 138 RGIAVFTFNGHLLREPWAVATRDGRPFQVFSAYWRAARHQYSPEAPQPAPQRINFFPVPD 197

Query: 181 ----AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
               A R+      +  PR  D+    +   +  GEQ     L  F    +  Y   RD+
Sbjct: 198 NIGVAARVENLSALALQPRTPDWA-SGLRETWQCGEQAGQTQLDAFLANALTRYASGRDV 256

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWN------RLKEEFVDL--LIKPKSGAFSWLNELIWR 288
           PA+Q TS+LSPYL  G LS RQ W+      R+     D        SG   +L+EL WR
Sbjct: 257 PAMQATSRLSPYLRFGNLSARQVWHAALSAARVGRHCGDARRTCTASSGVDKFLDELGWR 316

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF  +L+ ++ +      F    + + W  D+  L+AW+ G TG+P++DA MR+L   GW
Sbjct: 317 EFSYYLL-YHCAPLHQVNFKRQFDTMPWRADTADLRAWQHGRTGYPLVDAGMRELWHTGW 375

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RM+TASFLVK LL++WR GE +F   L+D D ASN   WQW A +G D+ PYFRI
Sbjct: 376 MHNRVRMVTASFLVKHLLINWREGEAWFWDTLVDADEASNPANWQWVAGSGADAAPYFRI 435

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPI 460
           FNP +QG++FDPQG ++R W+PEL  VP+  +HAP  WL +          L  +YPLP+
Sbjct: 436 FNPVLQGQKFDPQGAYVRRWVPELARVPSGCVHAP--WLAQPAQLASASVRLGQDYPLPV 493

Query: 461 VDHKKACHHTLN 472
           V H++A    L 
Sbjct: 494 VPHQQARERALK 505


>gi|225865104|ref|YP_002750482.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           03BB102]
 gi|225786063|gb|ACO26280.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus 03BB102]
          Length = 476

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 162/499 (32%), Positives = 257/499 (51%), Gaps = 60/499 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ VQK
Sbjct: 6   IVIFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +  ++ +  ++    Q  +T +++N  Y+ ++++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNTQEEILSLIE----QLDITAVYWNICYDPDKLQSNQKMKIVLEGK 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---------RSLP-- 178
            ++CK F+  +LL P  I       YKV+TPF  A  + ++   +          SLP  
Sbjct: 116 GIVCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGNSLPAS 175

Query: 179 --------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                   +P IR T                  I+ ++   E+ A    +KF   K+ +Y
Sbjct: 176 LSVSELHLLPTIRWTS----------------HIELIWEPTEEGAYKTCKKFFSSKLAFY 219

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELI 286
            E RD P     S L+PYLS G +S +  +    N+  E    L  K  +   S++ + I
Sbjct: 220 CEGRDFPNENAHSMLAPYLSFGQISVKWMYHYLINKSTERQCSLFEKQVN---SFIRQFI 276

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF  +L+  YP   + KP     E   WNK+  LL  W++G TG+P IDA MR+L   
Sbjct: 277 WREFSYYLLYHYP-FTVYKPLNKSFEHFPWNKEDELLTVWQKGETGYPFIDAGMRELWQT 335

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNR RM  ASFLVK LL+ W+ G ++FM  LL  D+A+N  GWQW A +G D+ PYF
Sbjct: 336 GFMHNRARMAVASFLVKHLLIPWQEGAKWFMDTLLAADIANNTMGWQWVAGSGADASPYF 395

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPI 460
           RIFNP  QG++FD  G +IR W+PEL ++P +YIH    AP   L K ++ +   YPLP+
Sbjct: 396 RIFNPITQGEKFDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIQIGHTYPLPV 455

Query: 461 VDHKKACHHTLNQYYAAKK 479
           VDHK A    L  Y + K+
Sbjct: 456 VDHKAARERALCAYKSMKE 474


>gi|90419365|ref|ZP_01227275.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336302|gb|EAS50043.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 483

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 161/494 (32%), Positives = 236/494 (47%), Gaps = 28/494 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  T+     +VWLR+DLR+ DN AL  A  +S   V+ + +   E      +      +
Sbjct: 1   MTQTSQSEPIVVWLRDDLRLDDNPALAEAA-DSGRPVVPLVVLDEESDGVRSLGGTHKWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    K L+ KG      +    +  ++ ++S       T L  NR+Y+      D
Sbjct: 60  LHHSLQCFGKDLADKGAPLILRRGKASEHVVDIVESTG----ATTLLMNRRYDQASRAVD 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             +E  L   V  + F  ++L  P  +       YKVYTPF K    NL + + R    P
Sbjct: 116 DAVEAALGSDVEVQRFTANILHDPDKVRTKTGGWYKVYTPFWK----NLAEDEPRDPIDP 171

Query: 181 AIRLTGPVTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             +L          R  ++            I   + +GE  A     +F  E +  Y +
Sbjct: 172 PDKLASLDDQPRSDRLEEWDLLPTRPDWSGGIAAFWKVGEAAAHERFEEFSDEWLNDYPD 231

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD P    TS++SP+L  G +SP + W+  +         P     ++  EL+WR+F  
Sbjct: 232 GRDRPGDDATSRMSPHLRWGEISPYRLWHMAEACANRRKTIPGDALKTFKKELVWRDFNY 291

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HL+  +  +   + +    +   W      L+AW++G TG+PI+DA MRQL   GWMHNR
Sbjct: 292 HLLHNFGPLAT-QNYNDRFDAFPWRSAKSELRAWQKGLTGYPIVDAGMRQLWECGWMHNR 350

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI  SFL KDLL+DWR GE +F   L+DGD+ASN   WQW   +G D+ PYFR+FNP 
Sbjct: 351 VRMIVGSFLTKDLLIDWREGERWFWDTLVDGDIASNTAQWQWIGGSGADAQPYFRVFNPV 410

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHK 464
            Q +RFD  G +IR ++PEL ++P + +HAP  W    D        L   YP PIVDH 
Sbjct: 411 TQSQRFDGDGDYIRRFVPELADLPDKVLHAP--WEADADTLAEAGVELGKTYPKPIVDHG 468

Query: 465 KACHHTLNQYYAAK 478
            A    L+ Y   K
Sbjct: 469 TARKRALDAYGEVK 482


>gi|78211765|ref|YP_380544.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605]
 gi|78196224|gb|ABB33989.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605]
          Length = 477

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 172/470 (36%), Positives = 232/470 (49%), Gaps = 30/470 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH----FIYASLL 66
           L W R DLR+ DN  L  A   S A V  V++  P            +     F+  SL+
Sbjct: 7   LFWHRRDLRLADNLGLVVAAQISPA-VTGVYVLDPAVINPPPELPPMAPARLWFLIESLV 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+   + G      +     D +  L     Q     + +NR  E    +RD+ + K 
Sbjct: 66  ELQQRWREAGSRLLVVE----GDPVAVLPQVAQQISAEAVVWNRDVEPYARKRDRQVAKT 121

Query: 127 LQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLR-SLPVPA 181
           LQ    RV+     D +L+ P  +   A   Y+VY PF R    Q L Q     + P   
Sbjct: 122 LQADGRRVVADW--DQLLIAPELLKTGAGDPYRVYGPFLRNWRGQVLAQKPATVAAPTGL 179

Query: 182 IRLTGPVTPSNIP-----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           + L   + P+  P         +    I P  P GE  AL  L  FC   +  Y   R+ 
Sbjct: 180 VDLPPELMPAGDPLPALRESHGFQGSEICPCRP-GEAAALEQLTTFCNGPLLGYEPDRNF 238

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLM 295
           P   GTS LS  LS+G LSPRQ W   ++       + +  A + W  EL WREFY+  +
Sbjct: 239 PGTAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEQLQAIAVWEQELGWREFYQQAL 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            ++P +  G P+     +  W  +      WK+G TG PIIDAAMRQLN  GWMHNR RM
Sbjct: 299 FYFPELADG-PYREQWRRFPWENNEDWFDFWKEGQTGMPIIDAAMRQLNQTGWMHNRCRM 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D+ P  RIFNP  Q 
Sbjct: 358 IVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDTKP-LRIFNPATQA 416

Query: 416 KRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHK 464
            +FD  G +IR W+PEL +V T+  +      L++ D    YP P+VDHK
Sbjct: 417 SKFDSAGDYIRRWVPELRHVNTKDLLSGEIGALERRD----YPEPLVDHK 462


>gi|315150502|gb|EFT94518.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0012]
          Length = 477

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 177/490 (36%), Positives = 253/490 (51%), Gaps = 48/490 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKLLEK 125
           + + Q+  +    Q        E LD +   +R       +++N        +RD+   +
Sbjct: 61  ERIDQEAHL----QIM----VGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMR 112

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183
             +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P    
Sbjct: 113 FFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYY-----NKWKEAPKETPIPVSYT 167

Query: 184 ----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  + P     + +   +     + +GE+ A   L  F  +K+  Y   RD P  
Sbjct: 168 AEKIFSACLFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENNRDFPYQ 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFY 298
             TS LS +L  G LS R     +++E   L   P S    ++  EL WR+FY  + + +
Sbjct: 228 DQTSHLSTFLRTGELSIR----TIRQE---LASAPSSLSKETFKKELAWRDFYNMIYSAF 280

Query: 299 P---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRM
Sbjct: 281 PQQKEEAIQEKF----RYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRM 336

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           ITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ 
Sbjct: 337 ITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQS 396

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   
Sbjct: 397 KKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQ 456

Query: 470 TLNQYYAAKK 479
           TL  Y A+K+
Sbjct: 457 TLFLYEASKE 466


>gi|167646881|ref|YP_001684544.1| deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31]
 gi|167349311|gb|ABZ72046.1| Deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31]
          Length = 478

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 176/484 (36%), Positives = 237/484 (48%), Gaps = 33/484 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQV 68
           +VWLRNDLR+ DN AL AA   +   VI ++I   TP      G+         ASL  +
Sbjct: 10  IVWLRNDLRLADNPALIAAA-ATGRPVIPLYILDETP------GVRPMGD----ASLWWL 58

Query: 69  QKSLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            KSL+      +            +   L+          + +NR Y+   + RD  L+ 
Sbjct: 59  DKSLAALDAALRATGSRLILRRGPARAVLEEVVADAEAAAVVWNRLYDAASIERDSALKA 118

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVP 180
            L+   V C+SF+  +L  P ++ N + Q YKV+TP+ +A    L    V+   ++L  P
Sbjct: 119 WLKDEGVACESFNAGLLNEPWTVKNGSGQPYKVFTPYWRAARDQLHDVHVEPAPKTLAAP 178

Query: 181 AIRLTGPVTPSNI--PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           A    G         P   D+     D   P GE  AL  L  F    V  Y  +RD P 
Sbjct: 179 AHWPHGDALEDWTLHPALLDW-STGFDLWTP-GEAGALARLDDFLSGPVQDYGHKRDFPG 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++ TS+LSP+L  G + PRQ W   +         P      +L+E+ WREF  H + F+
Sbjct: 237 VEATSRLSPHLHFGEIGPRQVWAAARHAAE-AGDAPAGQVEKFLSEIGWREF-NHSILFH 294

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                   F P  +   W K+    +AW +G TG+PI+DA MR+L   G+MHNR+RMI A
Sbjct: 295 NPDLPHTSFRPEFDGFPWVKNPAAFEAWSRGQTGYPIVDAGMRELWATGFMHNRVRMIVA 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK LL+DWR GE +F   L+D DLASN G WQW A  G D+ PYFRIFNP  QG++F
Sbjct: 355 SFLVKHLLIDWREGEAWFWDTLVDADLASNVGNWQWVAGGGADAAPYFRIFNPIAQGQKF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN----YPLPIVDHKKACHHTLNQY 474
           DP G ++R W+PEL  +P   IH P  W    D        YP PIV H  A    L  Y
Sbjct: 415 DPAGAYVRRWVPELAKLPDALIHEP--WKASPDPGAAAARIYPEPIVGHPAARERALEAY 472

Query: 475 YAAK 478
              K
Sbjct: 473 RGLK 476


>gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
 gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
 gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
 gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
          Length = 474

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 171/481 (35%), Positives = 239/481 (49%), Gaps = 26/481 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L AA   S A++I +F   P+  +   ++  +  ++   L ++Q+
Sbjct: 5   LFWHRRDLRLSDNIGLAAARAQS-AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      Q     D    +     Q +   +++N+  E     RD  +   L+  
Sbjct: 64  RYQQAGSRLLLLQ----GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQADLRSLPVPAIR 183
            I      D +L  P  IL+ +   Y VY PF K               +L  L    + 
Sbjct: 120 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 179

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              P+  S +P      F   D  FP+  GE  A+  L++FC   +  Y  QR+ PA  G
Sbjct: 180 AIAPLLLSELPTLKQLGFD-WDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAG 238

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           TS LSP L  G +  RQ W        +    + ++    W  EL WREFY+H +  +PS
Sbjct: 239 TSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPS 298

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G P+    ++  W     L  AW Q  TG+PI+DAAMRQL   GWMHNR RMI ASF
Sbjct: 299 LADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASF 357

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL++DWR GE++FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q K+FD 
Sbjct: 358 LTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDA 416

Query: 421 QGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDH---KKACHHTLNQYYA 476
             T+I+ WLPEL +V P   I    + +++      YP PIV+H   +K      NQ  A
Sbjct: 417 TATYIKRWLPELRHVHPKDLISGEITPIERR----GYPAPIVNHNLRQKQFKALYNQLKA 472

Query: 477 A 477
           A
Sbjct: 473 A 473


>gi|111219604|ref|YP_710398.1| deoxyribodipyrimidine photo-lyase [Frankia alni ACN14a]
 gi|111147136|emb|CAJ58783.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (Photoreactivating enzyme) [Frankia alni ACN14a]
          Length = 451

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 234/477 (49%), Gaps = 28/477 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V + WLR DLR++D+ AL AA   +D  V+ +F+      R  G    +  F+Y  L 
Sbjct: 1   MTVSVCWLRRDLRLSDSPALCAAVDGAD-DVLVLFVLDDALRRPAGPV--RLAFLYRCLR 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           ++   L  +        C    D ++ +          ++  +  Y     RRD  +E+ 
Sbjct: 58  ELDDRLGGR-------LCVRRGDPVDVVPEVARAVDARRVHISADYGPYGRRRDGEVEQA 110

Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            R   R + ++      + PG +       ++V+TPF +A  ++  +   R +  P    
Sbjct: 111 LRAGGRELVRT-GSPYAVAPGRLATAGGTPFRVFTPFYRAWKEHGWR---RPVAEPVGAR 166

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              +    IP   D     +      GE+ A   L +F    +  Y E+RD+P    TS+
Sbjct: 167 WALLASDGIPADPDLGGTRLPAA---GERAARERLAEFLAGSLTGYAERRDVPGQDTTSR 223

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G + PR     L     D    P+  A  + +EL WREFY  ++A  P+    
Sbjct: 224 LSPYLKYGCIHPRTVLAEL-----DRATSPRD-AEKFRSELAWREFYAEVLAANPASARA 277

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                    + ++      +AWK G TGFPI+DA MRQL   GW+ NR+RMI ASF+ KD
Sbjct: 278 D-LTGALADMAYDPPEGGFEAWKWGRTGFPIVDAGMRQLLAEGWVPNRVRMIEASFVCKD 336

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L V W  G  +F+  L+DGDLASN+ GWQW A TG D+ PYFR+FNP  QG R+DP GT+
Sbjct: 337 LHVHWTHGARWFLDHLVDGDLASNHHGWQWTAGTGTDAAPYFRVFNPVSQGHRYDPDGTY 396

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +R W+P+L +VP   +H P  W         YP P+VDH      +L +Y AA+++ 
Sbjct: 397 VRRWIPQLRDVPAAKVHEP--WTLPGGPPAGYPAPVVDHATERRESLARYEAARRRG 451


>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
           PCC 7942]
 gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
           Synechococcus sp. (Anacystis nidulans)
 gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
 gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase  RECEIVED X-Rays Dose 1.2 Exp15
           PhotonsMM2
 gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase  RECEIVED X-Rays Dose 4.8 Exp15
           PhotonsMM2
 gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase  RECEIVED X-Rays Dose
           1.2 Exp15 PhotonsMM2
 gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase  RECEIVED X-Rays Dose 4.8
           Exp15 PhotonsMM2
 gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
 gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
 gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
           PCC 7942]
          Length = 484

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 173/486 (35%), Positives = 241/486 (49%), Gaps = 36/486 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L AA   S A++I +F   P+  +   ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRLSDNIGLAAARAQS-AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      Q     D    +     Q +   +++N+  E     RD  +   L+  
Sbjct: 65  RYQQAGSRLLLLQ----GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-------- 181
            I      D +L  P  IL+ +   Y VY PF K       QA  +  PV          
Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNW-----QAQPKPTPVATPTELVDLS 175

Query: 182 ---IRLTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDI 236
              +    P+  S +P      F   D  FP+  GE  A+  L++FC   +  Y  QR+ 
Sbjct: 176 PEQLTAIAPLLLSELPTLKQLGFD-WDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNF 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLM 295
           PA  GTS LSP L  G +  RQ W        +    + ++    W  EL WREFY+H +
Sbjct: 235 PAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHAL 294

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +PS+  G P+    ++  W     L  AW Q  TG+PI+DAAMRQL   GWMHNR RM
Sbjct: 295 YHFPSLADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRM 353

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL KDL++DWR GE++FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q 
Sbjct: 354 IVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQA 412

Query: 416 KRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDH---KKACHHTL 471
           K+FD   T+I+ WLPEL +V P   I    + +++      YP PIV+H   +K      
Sbjct: 413 KKFDATATYIKRWLPELRHVHPKDLISGEITPIERR----GYPAPIVNHNLRQKQFKALY 468

Query: 472 NQYYAA 477
           NQ  AA
Sbjct: 469 NQLKAA 474


>gi|144897443|emb|CAM74307.1| Deoxyribodipyrimidine photo-lyase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 457

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 160/465 (34%), Positives = 239/465 (51%), Gaps = 50/465 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR+TD+ AL  A       V+  F    +  R  G ++R   +++ SL  +  
Sbjct: 7   LVWLRRDLRLTDHPALTHAAQQG--PVVLAFCHDDQDGRALGGASRW--WLHHSLAALGD 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +     +     +C   +  I  L   C  + V   ++N   +      +  + + L  +
Sbjct: 63  T-----VTLARGRC---EAEIPRLAEACGARAV---YWNASADPALSATEARVRQAL--K 109

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------------VQADLRSLP 178
           +  ++F    L   G++  +A   ++V+TPF +  +               V A    LP
Sbjct: 110 IPTETFAGDELFSIGAVRTNAGTPFQVFTPFWRTALALPPPPQPLPRPAPLVLAPCPGLP 169

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           + A+ L        +P+  D+ ++ +  ++  GE  A   L  F    V  Y   RD+PA
Sbjct: 170 LAALEL--------MPKL-DW-WRGMAELWQPGEAGAAARLADFLDGPVETYQRDRDLPA 219

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             GTS LSP+L+ G +SPRQ W+  +       + P  G  ++L EL WREF RHL+A  
Sbjct: 220 KPGTSLLSPHLAFGEISPRQIWHAARA------LPPGDGIHTFLKELGWREFSRHLLARQ 273

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +    P  P      W  D   L+ W+ G TG+PIIDA +RQL   GWMHNR+RMI A
Sbjct: 274 PDLAT-IPLRPEFRAFPWRDDPEALRKWQMGRTGYPIIDAGLRQLWQTGWMHNRVRMIVA 332

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL+KDLL+ W+ GE +F   L+D D A+N   WQW A +G D+ P+FRIFNP  QG++F
Sbjct: 333 SFLIKDLLIPWQAGEAWFWDTLVDADSANNAASWQWVAGSGADAAPFFRIFNPVTQGEKF 392

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           DP GT++R W+PEL ++P  ++H P  W  K   +  YP P+VDH
Sbjct: 393 DPDGTYVRTWVPELAHLPKAFVHQP--W--KMGRAPGYPPPMVDH 433


>gi|123967845|ref|YP_001008703.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601]
 gi|123197955|gb|ABM69596.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601]
          Length = 477

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 173/474 (36%), Positives = 245/474 (51%), Gaps = 36/474 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN+AL  A   S+A + + +I           S+R + F+  SL ++  
Sbjct: 7   LFWHRKDLRIFDNQALIKAFSLSNA-ITSTYIFDKNYSHDFNASSR-AWFLGNSLQELGN 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G      +     D +  +     +     +F+NR  E  E+ RD  ++K L+ +
Sbjct: 65  NWKKMGSRLVMEE----GDPVLIIPKLAKKINAKFVFWNRSIEPYEINRDLQIKKNLKEQ 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----------QNLVQADLRSLPV 179
            I      D +L+ P  I +     Y VY PF K L           Q+ V    + +  
Sbjct: 121 NIQVIETWDHLLVEPLKIFSGNNNPYSVYGPFYKNLKSKMNLLGLYEQDKVGFQFKDIDN 180

Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQRD 235
                T   + S + +F     +P   I P  P GE  A  +L  F  EK +Y Y   RD
Sbjct: 181 KLKDKTINSSDSVLEKFIKNIKFPGSNICPCKP-GENAAETLLENFINEKKIYSYNSARD 239

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF----SWLNELIWREFY 291
            P+  GTS LS  L  G +S R+ WN       DL      G +    +W  EL+WREFY
Sbjct: 240 FPSHNGTSFLSASLRFGTISIRKVWNATLNLNSDL---ENQGNYLSIETWQKELVWREFY 296

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H +  +P +  G P+    +   W  ++   Q W  G TG PI+DAAMRQLN+ GWMHN
Sbjct: 297 QHCLFHFPELEKG-PYRKKWDHFRWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHN 355

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFLVKDL+ +W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP
Sbjct: 356 RCRMIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNP 414

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
             Q K+FDP   +I++W+PEL+ V  ++ ++   S L+KND    Y  PIV+HK
Sbjct: 415 YTQAKKFDPICEYIKYWIPELSKVSNSELLNGDISNLEKND----YSSPIVNHK 464


>gi|326799093|ref|YP_004316912.1| deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
 gi|326549857|gb|ADZ78242.1| Deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
          Length = 437

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 169/478 (35%), Positives = 238/478 (49%), Gaps = 59/478 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQVQ 69
           + W R DLR+ DN ALY A   S  KV  VFI  T    +       +  FI+  L  + 
Sbjct: 9   IFWFRRDLRLQDNHALYEAL-RSGYKVQPVFIFDTAILSKLEDRDDARVSFIHRELRAIN 67

Query: 70  KSLSQK--GIVFQYHQCSN--FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           K L Q+  GI F YH   N  +++ ++  D   +       ++N  YE    +RDK +  
Sbjct: 68  KQLEQQSSGIAF-YHDEPNKAWEEIVKEFDPIAV-------YFNHDYEPYARKRDKEISD 119

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L Q+ +   +F D V+     +L    + Y V+TP+R   +  L ++ L++ P      
Sbjct: 120 FLRQYHIAVYTFKDQVIFEKEEVLKSNGEPYTVFTPYRNCWLAQLGESHLKNYPSERHLA 179

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTS 243
                   IP   +  F A    FP     A+          +  Y + RDIPA + GTS
Sbjct: 180 ALRSHWQTIPTLKELGFVATKQTFPSKSYKAV----------IGDYHQTRDIPADEKGTS 229

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYPSV 301
            LS +L  G +S R             LIK   ++   +WLNELIWREFY  ++  +P  
Sbjct: 230 HLSVHLRFGTVSIRS------------LIKDARQASEKTWLNELIWREFYMMILWHFPET 277

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            + K F    ++I W  +     AW QG TG+P++DA MRQLN  G+MHNR+RM+ ASFL
Sbjct: 278 -VNKAFKSAYDRIHWRNNESEFDAWCQGKTGYPLVDAGMRQLNETGFMHNRVRMVVASFL 336

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+DWR GE YF  +L D + +SN G WQWAA +GND+ PYFR+FNP IQ K+FDP+
Sbjct: 337 CKHLLIDWRWGEAYFARKLQDYEQSSNVGNWQWAAGSGNDAAPYFRVFNPEIQLKKFDPK 396

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
             + + W+PEL++                     YP PI++HKKA    L  Y  A K
Sbjct: 397 LVYAKRWIPELDD------------------PFRYPSPIIEHKKARERALEVYKNALK 436


>gi|327402941|ref|YP_004343779.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823]
 gi|327318449|gb|AEA42941.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823]
          Length = 434

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 166/471 (35%), Positives = 235/471 (49%), Gaps = 56/471 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  LY A   S  KV A+FI   +       + ++  FI+ ++  +Q+
Sbjct: 6   LFWHRRDLRISDNAGLYKAL-KSGLKVQAIFIFDSQILAHLSKNDQRVLFIHQTIQNLQQ 64

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +  + G  ++ +H      +  E +     +  +  +F NR YE N ++RDK +   L  
Sbjct: 65  AYQKLGASLWIFH-----GNPTEIIPQLVQKHEIKHVFCNRDYEPNALKRDKSVYDALT- 118

Query: 130 RVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           ++ C+     D V+     I+      Y V+TP+ K   + L   D    P P  +    
Sbjct: 119 KIGCQFSGSKDHVIFEKEEIVKSDGNPYHVFTPYMKRWKEQL--NDFYLQPYPVEKYIHN 176

Query: 188 VTPSN---IPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           + P+N   +P   +  F  I    FP  E           +  +  Y   RD PAI GT+
Sbjct: 177 LNPNNHVELPTLSELGFSEIQTQHFPSAE---------IPQTIIQSYENTRDFPAINGTT 227

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS +L  G +S R        E     +K     F   NELIWR+FY+ ++ FYP   +
Sbjct: 228 RLSIHLRFGTISIR--------ELAKQALKTNEKYF---NELIWRDFYQMILFFYPRT-I 275

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F     +IEW  D  L QAW  G TG+P++DA MR+LN  G MHNR+RM+ ASF  K
Sbjct: 276 EETFRKEYGRIEWEFDEKLFQAWCDGKTGYPLVDAGMRELNETGHMHNRVRMVVASFFCK 335

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L  DW++GE YF  +LLD +LASN GGWQWAA  G D+ PYFRIFNPT Q +RFDPQ  
Sbjct: 336 HLFHDWKLGERYFAEKLLDFELASNVGGWQWAAGCGVDAAPYFRIFNPTTQQERFDPQFE 395

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +I+ W+PE                     + +YP PIV+HK A   TL  Y
Sbjct: 396 YIKKWVPEFG-------------------TSDYPQPIVEHKWARERTLENY 427


>gi|124025078|ref|YP_001014194.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A]
 gi|123960146|gb|ABM74929.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A]
          Length = 504

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 168/490 (34%), Positives = 248/490 (50%), Gaps = 53/490 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQVQ 69
           + W R DLR  DN  L+ A  NS + +I V++  P         S  ++ F+  SLL++Q
Sbjct: 18  IFWHRRDLRFGDNIGLFEASKNSKS-LIGVYVLDPNLLDLNRTTSEAKNWFLGESLLELQ 76

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQ 128
           K+   +G +          D IE +           +++N   E  E+ RDK + EK  +
Sbjct: 77  KNWEIRGSLLLILN----GDPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEKLSK 132

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----------QNLVQADLRSLP 178
            +    +F D +++ P  I  +  + YKVY PF +  I           NL+Q    +  
Sbjct: 133 EKRKVYTFLDQLIVNPSDIKTNNDEPYKVYGPFYRKWIDIINRTKSSDNNLIQTSETAKK 192

Query: 179 VPAI--RLTGPVTPSNIPRFFDYPFQAIDPMFPI-------------GEQNALHILRKFC 223
           +  +  R    +  S++        ++I  +                GE  ++  L  F 
Sbjct: 193 LTGLNERELSSIKNSDLNYCITKKSKSIYELLSSNRFSNTSLCPCKPGESESIKQLNSFI 252

Query: 224 KEKVY-YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SW 281
              V   Y + RDIP+++ TS LS  LS+G +S R  WN  +        + K  +  +W
Sbjct: 253 HSGVINSYNQARDIPSLENTSNLSAALSLGTISCRAVWNGAQVSKSSTHDEYKINSIDTW 312

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPF------IPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           + EL WREFY++ +  +P +  G P+       PW  + +W       +AW  G TG PI
Sbjct: 313 IKELAWREFYQNALINFPELEKG-PYREKWLNFPWQNRPDW------FEAWGDGLTGIPI 365

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           IDAAMRQL   GWMHNR RMI ASFLVKDLL+DWR+GE +FM  L+DGDLA+NNGGWQW+
Sbjct: 366 IDAAMRQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMKSLVDGDLAANNGGWQWS 425

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSL 454
           AS+G D  P  RIFNP  Q  +FD  G +IR W+PEL+++ T   +    S  ++N    
Sbjct: 426 ASSGMDPKP-MRIFNPFRQASKFDEDGEYIRKWIPELSHISTPNLLSGEISSAERN---- 480

Query: 455 NYPLPIVDHK 464
           +YP PI++HK
Sbjct: 481 SYPNPIINHK 490


>gi|298291394|ref|YP_003693333.1| deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
 gi|296927905|gb|ADH88714.1| Deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
          Length = 479

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 165/485 (34%), Positives = 249/485 (51%), Gaps = 33/485 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLL 66
           S  LVW R+DLR+ DN AL+AA  +    V+   +    E  R  G +AR   ++  +L 
Sbjct: 4   SPALVWFRDDLRLADNPALHAAQRSGRPLVLLYLLDEESEGIRPLGGAARW--WLGRALA 61

Query: 67  QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
            V +++  KG  ++ +  +        E + +   + +   +++NR+Y   E+  D  L+
Sbjct: 62  SVTEAIEAKGGQLILRRGKAG------EVVPAVAAEAKAGAIYWNRRYGAAEIAVDAALK 115

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             L Q  ++ +SF+ S+L  P ++   +   +KV+ PF     +N  Q D+R        
Sbjct: 116 TELAQKGLMVESFNGSLLHEPWTVKTQSGGPFKVFGPF----YRNAAQHDIRRPARVGSH 171

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRD 235
                TP+      D+  +   P +  G        E      L  F    +  Y   RD
Sbjct: 172 WHFAETPAG-DELRDWKLEPTTPDWAGGLRESWIPGEDGGRAALAAFVDGGLRSYAAGRD 230

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P ++ TS+LSPYL  G LSP+Q    ++    D      +    +++EL WREF  HL+
Sbjct: 231 RPDMEHTSRLSPYLRFGHLSPQQVLAAVRHA-ADAGEVRGTDVEKFVSELYWREFSYHLL 289

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +     F    +  EWN+D+ + +AW++G TG+P+IDA MRQL   GWMHNR+RM
Sbjct: 290 FHFPDLAQVN-FNRRFDGFEWNQDAKIERAWQRGLTGYPLIDAGMRQLWQTGWMHNRVRM 348

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL+K  LVDWR GE +F   L+D D A+N   WQW A +G D+ PYFRIFNP  QG
Sbjct: 349 VAASFLIKHALVDWRRGEVWFWDTLVDADPANNAASWQWVAGSGADAAPYFRIFNPVTQG 408

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           ++FDP G ++R ++PEL  +P   IH    AP   L +  + L   YP PIVDH  A   
Sbjct: 409 EKFDPDGAYVRRFVPELAGLPDTSIHKPWQAPPQVLAQAGVRLGETYPHPIVDHAAARRR 468

Query: 470 TLNQY 474
            L +Y
Sbjct: 469 ALERY 473


>gi|72383487|ref|YP_292842.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
           str. NATL2A]
 gi|72003337|gb|AAZ59139.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
           str. NATL2A]
          Length = 493

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 168/491 (34%), Positives = 252/491 (51%), Gaps = 55/491 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQVQ 69
           + W R DLR  DN  L+ A  NS + +I V++  P+        S  ++ F+  SL+++Q
Sbjct: 7   IFWHRRDLRFGDNIGLFEASKNSKS-LIGVYVLDPKLLDLNRTTSEAKNWFLGESLIELQ 65

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K+   +G            D IE +           +++N   E  E+ RDK + ++L +
Sbjct: 66  KNWEIRGSRLLILN----GDPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEKLSK 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----------QNLVQADLRSLP 178
            +    +F D +++ P +I  +  + YKVY PF +  I           NL+Q    +  
Sbjct: 122 EKRKVYTFLDQLIVNPSNIKTNNDEPYKVYGPFYRKWIDLINITKSSENNLIQTSETAKQ 181

Query: 179 VPAI--RLTGPVTPSNIPRFFDYPFQAIDPMFPI-------------GEQNALHILRKFC 223
           +  +  R    +  S++        ++I  +  +             GE  ++  L  F 
Sbjct: 182 LTGLNERELSSIKNSDLNYCITNKSKSIYELLSLNRFNKTNLCPCKPGESESIKQLNSFI 241

Query: 224 KEKVY-YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFS 280
              V   Y + RDIP+++ TS LS  LS+G +S R  WN  ++ +   D   K  S   +
Sbjct: 242 HSGVINSYNKARDIPSLENTSHLSAALSLGTISCRVVWNGAQVSKNATDDEYKINS-IDT 300

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPF------IPWTEKIEWNKDSHLLQAWKQGYTGFP 334
           W+ EL WREFY++ +  +P +  G P+       PW  + +W       +AW  G TG P
Sbjct: 301 WIKELAWREFYQNALINFPELEKG-PYREKWLDFPWQNRPDW------FEAWGDGLTGIP 353

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IIDAAMRQL   GWMHNR RMI ASFLVKDLL+DWR+GE +FM  L+DGDLA+NNGGWQW
Sbjct: 354 IIDAAMRQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMKSLVDGDLAANNGGWQW 413

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLS 453
           +AS+G D  P  RIFNP  Q  +FD  G +IR W+PEL+++ T   +    S  ++N   
Sbjct: 414 SASSGMDPKP-MRIFNPFRQASKFDEDGEYIRKWIPELSHISTPNLLSGEISSAERN--- 469

Query: 454 LNYPLPIVDHK 464
            +YP PI+ HK
Sbjct: 470 -SYPKPIISHK 479


>gi|254292413|ref|YP_003058436.1| deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
 gi|254040944|gb|ACT57739.1| Deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
          Length = 475

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 165/490 (33%), Positives = 254/490 (51%), Gaps = 44/490 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L W R DLR++DN AL +A   SD   IA+FI   E   Q  + +    +++ SL+++
Sbjct: 1   MNLCWFRQDLRLSDNPALRSAL--SDNSAIALFILE-ETDTQRPMGSACKAWLHESLIRL 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L   G+     +     D+ + +       ++  +++NR+Y+  +V  D+ L + L+
Sbjct: 58  QSDLEAIGVPLVLRRG----DARDIIPKLTSDLKIDNVYWNRRYDPKDVAIDRALMEHLK 113

Query: 129 HR-VICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              V  +SF  +VL  P  I +  A   YKV++PF KA ++           VPA  L  
Sbjct: 114 EEGVNVESFKANVLFEPWEIKSAGAGTPYKVFSPFWKAALKE---------GVPAQSLAV 164

Query: 187 PVTPSNIPRFFDYPFQAID-----PMFP-----------IGEQNALHILRKFCKEKVYYY 230
           P    + P+    PF  ++     P  P            GE  A    ++F +  +  Y
Sbjct: 165 PTKIQSKPQLDQLPFDNLEDWDLMPASPNWTNGFWDVWVPGEAGAFERFKEFLEINLKGY 224

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD+P+   TS LSP+L  G +SP Q W+ +       + K     + +L E+ WREF
Sbjct: 225 SQNRDVPSKNHTSCLSPHLRFGEISPLQIWHGVHAHSGGEVDK---DGYKFLAEVGWREF 281

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             H + FY        +    +   W +D + L AW+ G TG+P++DA MR+L   G++H
Sbjct: 282 -SHSILFYADNLSQTNWKSDFDGFAWVQDENGLTAWQSGQTGYPLVDAGMRELWQTGYIH 340

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL+K L +DWR GE +F   L+D   A+N   WQW A +G D+ P+FRIFN
Sbjct: 341 NRVRMVVASFLIKHLRIDWREGEAWFWDTLVDACPANNPASWQWVAGSGADASPFFRIFN 400

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHK 464
           P +Q ++FDP+G++IR W+PEL N+  + IH    AP   L +  + L  NYP PIVDHK
Sbjct: 401 PIMQSEKFDPKGSYIRKWVPELANLDNKSIHTPWEAPKLVLQEVGVRLGENYPKPIVDHK 460

Query: 465 KACHHTLNQY 474
            A    L  Y
Sbjct: 461 TARDKALAAY 470


>gi|255720052|ref|XP_002556306.1| KLTH0H09922p [Lachancea thermotolerans]
 gi|238942272|emb|CAR30444.1| KLTH0H09922p [Lachancea thermotolerans]
          Length = 574

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 165/512 (32%), Positives = 250/512 (48%), Gaps = 42/512 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGI 53
           KA  +  VH  W R DLR+ DN AL  A            DA++IA++      WR H  
Sbjct: 68  KADISAVVH--WFRTDLRVRDNAALSNAIKLLREIRGQKKDAQLIALYTINEHDWRAHLD 125

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYC--LQQRVT 104
           S  +  F   +L  +++ L Q  +     +        S   + ++W+   C  L Q   
Sbjct: 126 SGWKLTFALNALESLREMLKQMNVALVVRKFESKKPLLSRSSEFVDWVKEQCVSLAQGNV 185

Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164
            +  N QYE +E+ RD  L  +   +   + + D  ++ PGS+       Y V+TP+ K 
Sbjct: 186 LVTANAQYETDELYRDLKLFDKQDEQFRFQVYHDQCIVQPGSLTTGKGSQYTVFTPWYKR 245

Query: 165 LIQNLV--QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-----------PIG 211
            ++ L   +    ++ + A+     V  S + +F    ++  D              P  
Sbjct: 246 WVEYLKSHKQGKEAIKIHAVDQESKVNES-LAKFESEAYELSDEFLAYLPCDKLEVPPAT 304

Query: 212 EQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           E +A  +L++F      + Y E++D  ++  TS LS Y++ G++S R+  NR   E  D 
Sbjct: 305 EADAHELLQEFISSGNAHKYNEKKDTLSLDSTSHLSCYITSGLISTREVVNRAFHENGDS 364

Query: 271 L----IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
           L    IK  +   +++ E+ WR+FY+H+M  +P + M       T  I+W  D      W
Sbjct: 365 LMRRDIKQNNSVENFIKEVAWRDFYKHVMCNWPYMSMEIAIKFETMDIKWENDEEKFSKW 424

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
             G TG P++DA MR+L   G++ NR RMI ASFL K+LLVDWR GE +F   LLD DLA
Sbjct: 425 CLGETGLPVVDAIMRKLLYTGYISNRCRMIVASFLSKNLLVDWRWGERWFRKHLLDADLA 484

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHS 445
           SN GGW + +STG D+ PYFRIFN  +Q +R+DP G F++ W+PEL +    + I    S
Sbjct: 485 SNAGGWGFCSSTGIDAQPYFRIFNMKLQCERYDPDGKFVKMWVPELKDADNVRIIREGRS 544

Query: 446 WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             D  D    YP PIVD K +    L  +  A
Sbjct: 545 EKDAVD---GYPSPIVDLKDSRERALEAFREA 573


>gi|182414480|ref|YP_001819546.1| deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
 gi|177841694|gb|ACB75946.1| Deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
          Length = 501

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 169/497 (34%), Positives = 249/497 (50%), Gaps = 60/497 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATP--------EQWR-QHG 52
           M+  L+W R DLR+ DN AL+AA       VI V++      +P        + W  Q G
Sbjct: 1   MTPTLLWFRQDLRLQDNPALHAALARG-GPVIPVYVWEESCESPAAEGARANDGWAAQPG 59

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
            ++R   +++ SL  +  ++ ++G      +     D +  L           +++NR+Y
Sbjct: 60  AASRW--WLHHSLEALDAAVRERGGRLILRR----GDPLAELQEIVRATGAKGVYWNRRY 113

Query: 113 EINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           E     RD  ++  L    +  K+F+ ++L  P +ILN     ++V++ + +  +  L  
Sbjct: 114 EPAARARDARVQTELAAAGLDVKTFNSALLNEPETILNKQGGPFQVFSAYWRHCL-TLPV 172

Query: 172 ADLRSLPVPAIRLTGPV-TPSNIPRFFDYPFQAIDP----------MFPIGEQNALHILR 220
           A  R LP       GP+  P   PR  D     + P           +  GE +A   + 
Sbjct: 173 AAPRKLPA------GPIPAPERWPRSLDVAALELRPRVAWDRGLAQAWTPGEASAAKRMT 226

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKS 276
           +F    +  Y E+RD P   GTS LS  L  G +SPRQ W     R +E  V     P +
Sbjct: 227 RFVAGAIDRYDEERDFPGCDGTSMLSAALHWGEISPRQLWAAVRGRSRESGV---FPPSN 283

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFP 334
           GA  +L EL WREF  HL+  +P   + +P      +  W +D     L+AW++G TG+P
Sbjct: 284 GARIFLAELGWREFAYHLLWHFPHT-IEQPLRRAFARFSWAEDPEGRRLRAWQRGQTGYP 342

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           I+DA MRQL   GWMHNR+RMI ASFLVK L + W  G  +F   L+D DLA+N  GWQW
Sbjct: 343 IVDAGMRQLWQTGWMHNRVRMIVASFLVKHLRLSWPHGATWFWDTLVDADLANNTLGWQW 402

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--- 451
           +A  G D+ PYFRIF P +QG++FD  G ++R W+PEL  +P +++HAP  W        
Sbjct: 403 SAGCGADAAPYFRIFAPVLQGRKFDSDGVYVRRWVPELARLPDRFLHAP--WTATAQTLA 460

Query: 452 -----LSLNYPLPIVDH 463
                L  NYP P+VDH
Sbjct: 461 AAGVRLGENYPRPVVDH 477


>gi|170780895|ref|YP_001709227.1| putative deoxyribodipyrimidine photolyase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155463|emb|CAQ00571.1| putative deoxyribodipyrimidine photolyase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 508

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 163/508 (32%), Positives = 255/508 (50%), Gaps = 46/508 (9%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    +VWLR+DLR+ DN A++AA    +  ++ +++   E      +      +++
Sbjct: 17  ADQAHGPTIVWLRDDLRVADNPAMHAAVERGE-PIVVLYVLDEESAGIRPLGGAARWWLH 75

Query: 63  ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
            SL ++ +SL   G  +V +  + ++       +D    +     + +NR+Y   E+  D
Sbjct: 76  MSLSRLGESLRGLGSPLVLRRGKAADV------VDDLVREVGAGAVLWNRRYGGAEIAVD 129

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++K L  R +  +SF  S+L+ P +++N   + ++VYTPF K       +   +  P 
Sbjct: 130 TAIKKDLGDRGLDVRSFQGSLLVEPWTVVNKQGEPFRVYTPFWKTAQDR--EEPRKPFPA 187

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI-----------GEQNALHILRKFCKEKVY 228
           P         P   PR  D     + P  P            GE   L  L  F   ++ 
Sbjct: 188 P----DALEAPRKAPRSDDLDDWGLLPTKPDWAAGLREACDPGEAAGLQRLEDFVHHELE 243

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y  QRD PA   TS+LS YL  G +SP Q W+R++      +   +  A  +L+EL WR
Sbjct: 244 DYAAQRDEPAAMTTSRLSAYLRWGEVSPFQVWHRVQRTRGKKVGGDEVNATKFLSELGWR 303

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           EF  HL+   P +   + F+P  +   W++     L AW++G TG P++DA MR L   G
Sbjct: 304 EFSYHLLYHQPDLAT-RNFVPRFDAFPWDEPRDDTLGAWQRGETGVPLVDAGMRALWKDG 362

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
            +HNR+RM+ ASFL+K+LL+DWR GE++F   L+D D A+N   WQW A +G D+ PYFR
Sbjct: 363 HLHNRVRMVVASFLIKNLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFR 422

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------------ 455
           +FNP +QG++FDP G +IR ++PEL + P   +H P  W  + DL  +            
Sbjct: 423 VFNPVLQGQKFDPSGEYIRSYVPELAHAPRDVVHEP--WKAQGDLVASAEDDADASADGG 480

Query: 456 ---YPLPIVDHKKACHHTLNQYYAAKKQ 480
              YP PIVD K++    L  Y   K +
Sbjct: 481 LAAYPSPIVDLKESRQRALAAYDEIKDR 508


>gi|317968588|ref|ZP_07969978.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
          Length = 479

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 172/478 (35%), Positives = 239/478 (50%), Gaps = 35/478 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN  L AA   +   V  VF+  P       ++  +  F+  SL ++Q 
Sbjct: 7   LFWHRRDLRLVDNLGLAAAAAAT-LAVTGVFVLDPAILSAADMAPARVWFLLESLKELQA 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S  + G      Q     D  E L           + +NR  E     RD+ +   LQ +
Sbjct: 66  SWRKAGSQLLLLQ----GDPAEVLPQLAKAIGAGVVAWNRDVEPYGRERDRRVAAALQAQ 121

Query: 131 VICKSFD-DSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADL---RSLPVPAIR 183
                 D D +L+ P ++       Y+VY PF++     ++   +A     RS P   + 
Sbjct: 122 GQKVLVDWDQLLVAPEALKTGGGDPYRVYGPFKRNWFGQVERRAEAGELAPRSAPQGLLA 181

Query: 184 LTGPVTPSNIPRFFDYP-FQAIDPMF------PI--GEQNALHILRKFCKEK-VYYYVEQ 233
             G      +P   + P  +++   F      P   GE  A   L  FC    +  Y   
Sbjct: 182 YDG-----ELPVLAELPSLESLGKTFLGAELCPCRPGEAAAKQQLEAFCDGGPLLSYEPG 236

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYR 292
           R++P   GTS LS  L  G LSPRQ W+  ++ + +    + +     W  EL WREFY+
Sbjct: 237 RNMPGEAGTSGLSAALKFGTLSPRQAWDAAQQAKALARSDEQRESIQVWEQELAWREFYQ 296

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             +  +P +  G P+ P  +   W  D    QAW  G TG PIIDAAMRQLN  GWMHNR
Sbjct: 297 QALFHFPELADG-PYRPQWKLFPWENDPDRYQAWCDGLTGMPIIDAAMRQLNESGWMHNR 355

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI AS+LVKDL+ DWR+GE  FM++L+DGDLA+NNGGWQW+AS+G D  P  RIFNP 
Sbjct: 356 CRMIVASYLVKDLICDWRLGETAFMARLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPA 414

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
            Q  +FDP+G +IR WLPEL++V T+  +    + +++      YP PIV HKK   H
Sbjct: 415 TQASKFDPEGDYIRRWLPELSHVNTKDLLSGEITPMERR----GYPAPIVSHKKQQAH 468


>gi|116671293|ref|YP_832226.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24]
 gi|116611402|gb|ABK04126.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24]
          Length = 474

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 163/483 (33%), Positives = 241/483 (49%), Gaps = 30/483 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +VWLR+DLR+ DN AL  A        + V+I   E      +      +++ SL+
Sbjct: 1   MPSTIVWLRDDLRLDDNPALADAAAMGHPLTV-VYILDEESPGVRPLGGAAKWWLHHSLV 59

Query: 67  QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
            +   L   G  +V +    +        +     +   T L +NR+Y   E   D  ++
Sbjct: 60  SLAGGLEAAGSRLVLRRGSAAGI------IQELAAETGATHLRWNRRYGGPERSIDAGVK 113

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPV 179
                + +   SF  S++  P ++   A   YKV+TPF +A +++    +      +LP 
Sbjct: 114 AWAGEQGLDAASFQASLMFEPWTVRTGAGGPYKVFTPFWRACLESGEPRIPSDGPGTLPH 173

Query: 180 PAIRLTGPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
           PA    G    S+       +PR  D+     +   P GE  A   L+ F    V  Y  
Sbjct: 174 PAGHGDGGPPQSDDLDSWALLPRTPDWSAGLAEQWTP-GEAGAHSRLKDFLDGPVEEYGT 232

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD P ++GTS+LSP+L  G +SP + W+ L+E F         G F   +EL WREF  
Sbjct: 233 GRDRPGVEGTSRLSPHLRFGEISPFRIWHALRERFP-RQAPADVGIFR--SELGWREFCW 289

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            L+   P +   + + P  ++ EW   S   L+AW+QG TG+P++DA MRQL   GWMHN
Sbjct: 290 QLLYENPELAS-RNYRPDFDRFEWQTPSDAELEAWQQGRTGYPLVDAGMRQLWQTGWMHN 348

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM  ASFLVK+LL DWR+GE +F   L+D D ASN   WQW A +G D+ PYFRIFNP
Sbjct: 349 RVRMAAASFLVKNLLADWRLGEAWFWDTLVDADSASNPANWQWVAGSGADASPYFRIFNP 408

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
             Q K+FD  G ++R ++PE+ N+  + IH P       +L+  YP P+V   ++    L
Sbjct: 409 VTQSKKFDAAGRYLREFIPEIANLSEKEIHEP---WKAPELAAGYPEPLVGLPESRERAL 465

Query: 472 NQY 474
             Y
Sbjct: 466 ETY 468


>gi|115525443|ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
           BisA53]
 gi|115519390|gb|ABJ07374.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
           palustris BisA53]
          Length = 483

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 156/485 (32%), Positives = 234/485 (48%), Gaps = 28/485 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R+DLR++D+ AL AA  +S   V+ +++   +      +      ++  SL  +Q+
Sbjct: 10  LVWFRDDLRLSDHPALNAAA-SSGRPVLCLYVLDEQSPGGRPLGGAARWWLAQSLRSLQQ 68

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DKLLEKRLQ 128
            LS++G      + +    + + +     +     ++YN    +   R    +L      
Sbjct: 69  ILSERGATLMLRRGA----AAQVVAGLARETNAEVVYYN-DIAMAPARTVAAELAATLAD 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           H +        +L  P +I     +  +V+TPF K ++     A     P+PA    GP 
Sbjct: 124 HGIAVHQHPGDLLAAPETIRTKEGRGLRVFTPFWKRVLSLGDPAK----PLPAPTALGPP 179

Query: 189 TPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             +   R  D+  +   P         +  GE  A   L  F    +  Y   RD P   
Sbjct: 180 PAAASDRLDDWALEPTAPDWAGGLRAAWQPGEAAAQRALTDFLTTGIAGYAGDRDRPDRP 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LSP+L  G + PRQ W+  +                +L+EL WREF RHL+ F  S
Sbjct: 240 GTSLLSPHLRFGEIGPRQIWHAARFAAAARPAI-AGDVDKFLSELGWREFCRHLL-FDHS 297

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +   P  +   W +D   L+AW++G TG+PI+DA MRQL   G MHNR+RM+ ASF
Sbjct: 298 DLATRNLQPAFDAFPWVEDPAGLRAWQRGLTGYPIVDAGMRQLWQTGVMHNRVRMVVASF 357

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+DWR GE++F   L+D D  SN G WQW A  G D+ PYFR+FNP +QG++FDP
Sbjct: 358 LVKHLLIDWRCGEQWFWDTLVDADAGSNPGNWQWVAGCGADAAPYFRVFNPILQGEKFDP 417

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQY 474
            G ++R ++PEL  +P   IH P +            L  NYP PI++H++     L  Y
Sbjct: 418 DGAYVRRFVPELARLPAALIHQPWTATPLELASAGVQLGHNYPEPIIEHRRGRERALAAY 477

Query: 475 YAAKK 479
              +K
Sbjct: 478 ATVRK 482


>gi|195995781|ref|XP_002107759.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
 gi|190588535|gb|EDV28557.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
          Length = 503

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 175/508 (34%), Positives = 254/508 (50%), Gaps = 51/508 (10%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           +++ +   LVWLR DLR+ DN AL+ A        + +F       R+ G +     ++Y
Sbjct: 2   SSSKIPCTLVWLRQDLRLIDNPALFHAAKRGQLITVYIFDEDCSGKRRTGQACL--WWLY 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSN-FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            SL  ++  LSQ  I        + F    E LDSY        +++NR YE  E  RD 
Sbjct: 60  HSLKSLRNQLSQWNIPLIVKSGKDAFTILKELLDSY----NADAIYWNRCYEPFEYNRDC 115

Query: 122 LLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +E++L+   V  +++ D VL  P +I        ++Y  F    +         SLP P
Sbjct: 116 SIEEKLKMENVTVETYQDRVLFEPWTIKTAKGGPVQIYVHFWNQCL---------SLPQP 166

Query: 181 AI--------RLTGPVTPSNIPRFF--------DYPFQAIDPMFPIGEQNALHILRKFCK 224
                       TG  +  + P  +        D P +  D   P GE+ A+  L+ F K
Sbjct: 167 RKPYDKPKFKNQTGCQSKCDEPAVWQRLAKLSQDMPMKLQDFWHP-GEEQAISKLKSFIK 225

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSW 281
             +  Y E+     +  TS LSPYL  G +SP   W+ ++          +K +S    +
Sbjct: 226 NSLNAYAEKSQCLRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVKSESLK-QY 284

Query: 282 LNELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
           L  L WRE+  HL+  YP +   C    F    E+++   D   LQ+W+QG TG+P++DA
Sbjct: 285 LRSLGWREYTCHLLFHYPDLPQKCFRSSF----EQLKLQVDPVKLQSWQQGNTGYPVVDA 340

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            MRQL+  G M NRLRMI ASFL+K LLV W+ GEE+F S+L+D DLA N   WQWAA +
Sbjct: 341 GMRQLSVAGIMPNRLRMIVASFLIKHLLVPWQKGEEWFWSKLIDADLAQNAFNWQWAAGS 400

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL 454
           G ++ PYFR+FNP  QG++FD  G ++R W+PEL  +P  YIH    AP + L K ++ L
Sbjct: 401 GPNACPYFRVFNPITQGEKFDADGYYVRKWIPELAALPNAYIHKPWEAPSTVLKKANIVL 460

Query: 455 N--YPLPIVDHKKACHHTLNQYYAAKKQ 480
              YP PIV HK A    L  +   K++
Sbjct: 461 GKTYPRPIVQHKAARELALATFGQTKRK 488


>gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
 gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
          Length = 477

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 172/473 (36%), Positives = 233/473 (49%), Gaps = 34/473 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQH--GISARQSHFIYASLL 66
           L W R DLR+ DN  L AA   S A V  V++  P+     +H   ++  +  F+  SL+
Sbjct: 7   LFWHRRDLRLADNLGLVAATDISPA-VTGVYVLDPQLINPTEHLPPMAPARLWFLIESLV 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+   + G      +     D +  L     Q     + ++R  E     RD+ + K+
Sbjct: 66  ELQQRWREAGSRLLVVK----GDPVAVLPQLAQQIGAEAVVWSRDVEPYARERDRQVAKK 121

Query: 127 LQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ        D D +L+ P  +       Y+VY PF    ++N     L   P      T
Sbjct: 122 LQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPF----LRNWRGQVLAKQPSTVAAPT 177

Query: 186 GPVT--PSNIPRF---------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           G V   P+ +P             +    I P  P GE  AL  L  FC   +  Y   R
Sbjct: 178 GLVDLDPAQLPALESLEALRESHGFKGAEICPCRP-GEAAALAQLNSFCDGPLLAYEPDR 236

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRH 293
           + P   GTS LS  LS+G LSPRQ W   ++       +    A + W  EL WREFY+ 
Sbjct: 237 NFPGTAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEHLQAIAVWEQELGWREFYQQ 296

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +  +P +  G P+     +  W  +      WK+G TG PIIDAAMRQLN  GWMHNR 
Sbjct: 297 ALFHFPELADG-PYREKWHRFPWENNEDWFDFWKEGQTGMPIIDAAMRQLNQTGWMHNRC 355

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  P  RIFNP  
Sbjct: 356 RMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPAT 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           Q  +FD  G +IR W+PEL +V T+  +      L++ D    YP P+VDHKK
Sbjct: 415 QASKFDSAGDYIRQWVPELRHVNTKDLLSGEIGALERRD----YPEPLVDHKK 463


>gi|33860843|ref|NP_892404.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33633785|emb|CAE18744.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 478

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 176/478 (36%), Positives = 247/478 (51%), Gaps = 45/478 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN+AL  A   SDA + + +I           S+R + F+  SL ++  
Sbjct: 7   LFWHRKDLRIFDNQALIKAFSLSDA-ITSTYIFDKNYSHDFNASSR-AWFLGNSLQELGN 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G      +     D +  +     +     +F+NR  E  E+ RD  ++  L+ +
Sbjct: 65  NWKKMGSRLVLEE----GDPVLIIPQLAKKIDAKFVFWNRSIEPYEINRDLEIKNNLKEQ 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQA-------------DL 174
            I      D +L+ P  I +     Y VY PF K L    NL+ +             D 
Sbjct: 121 NIQVIETWDHLLIEPLKIFSGNNNPYSVYGPFYKNLKSKINLLGSFEQDKVVFQFKDIDN 180

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQ 233
           +     AI  +  V    I +   +P   I P  P GE  A  +L  F  EK +Y Y   
Sbjct: 181 KFKENKAINSSDSVLEKFI-KNIKFPGSNICPCRP-GENAAQTLLENFINEKKIYSYNSA 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVD----LLIKPKSGAFSWLNELI 286
           RD P+  GTS LS  L  G +S R+ WN    L  +F +    L I+      +W  EL+
Sbjct: 239 RDFPSHNGTSFLSASLRFGTISIRKVWNATLNLNSDFANQENYLSIE------TWQKELV 292

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREFY+H +  +P +  G P+    +   W  ++ L Q W  G TG PI+DAAMRQLN+ 
Sbjct: 293 WREFYQHCLFHFPELEKG-PYRKKWDHFPWQNNNELFQHWSNGETGVPIVDAAMRQLNST 351

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR RMI ASFLVKDL+  W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  
Sbjct: 352 GWMHNRCRMIVASFLVKDLICSWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-L 410

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           RIFNP  Q K+FDP   +I++W+PEL+ V  ++ ++   S L+KN    NY  PIV+H
Sbjct: 411 RIFNPYTQAKKFDPICEYIKYWIPELSRVSNSELLNGEISNLEKN----NYSSPIVNH 464


>gi|282897058|ref|ZP_06305060.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9]
 gi|281197710|gb|EFA72604.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9]
          Length = 479

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 172/471 (36%), Positives = 240/471 (50%), Gaps = 30/471 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR +DN  L  A   +  KV+ VF   P    Q  I+  +  ++   L  ++ 
Sbjct: 6   LFWHRRDLRTSDNTGLGVAREKT-KKVVGVFCLDPNILGQDDIAPARITYMIGCLKSLES 64

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
              Q G  +   H     D+ +  + +         +F+N   E     RD+ +   L+ 
Sbjct: 65  LYLQAGSQLLILH-----DNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRDRDVTLALKT 119

Query: 130 RVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKA------LIQNLVQADLRSLPVPA 181
           R I   +   D +L  P +IL+     Y VYTPF K       L    + A+  +L    
Sbjct: 120 RGIETLEKNWDQLLHSPETILSGTRTPYTVYTPFWKKWHSQPKLEPIEILANCENLTARE 179

Query: 182 IRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             +        +P   D  F    + +   GE  A   L  F    +  Y E+R+ PAI 
Sbjct: 180 EEIAEKSGVIKLPTARDLGFIWDGELILEPGEVAAWERLTDFLDCAIDEYEEKRNYPAID 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-----WLNELIWREFYRHLM 295
           GTS LSP L  GV+  R  W + +E    LL    S  FS     W  EL WREFY+H M
Sbjct: 240 GTSLLSPALKFGVIGIRTIWQKTQE----LLAISNSQEFSNGIITWQKELAWREFYQHAM 295

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +  G  +    +   W+ +    Q+W +G TG+PI+DAAMRQLN  GWMHNR RM
Sbjct: 296 YHFPELAEGA-YRDVFKNFPWSDNQDHFQSWCEGKTGYPIVDAAMRQLNETGWMHNRCRM 354

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP+ Q 
Sbjct: 355 IVASFLTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPSSQA 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKK 465
           ++FD  G +IRHW+ EL +V T+Y I    + L++    L YP PIVDHKK
Sbjct: 414 QKFDGDGEYIRHWVGELASVDTEYLIGGNITPLERQ--GLGYPPPIVDHKK 462


>gi|221215267|ref|ZP_03588233.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD1]
 gi|221164951|gb|EED97431.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD1]
          Length = 554

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 162/471 (34%), Positives = 232/471 (49%), Gaps = 32/471 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V  R DLR++D+ AL AAC   DA V+ V++  P++       A    +++ SL 
Sbjct: 79  MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHAPDEDTAWAPGAASRWWLHHSLT 137

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L Q+G   Q H     D +I  +           +++ R+YE   +  D  L+  
Sbjct: 138 SLDRALRQQGA--QLHVMEG-DPTIA-VPMLARAVGAQAVYWTRRYEPTAIACDTALKTT 193

Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   I   S   ++   P ++   A Q Y+V+TPF + L  +L        P+PA R  
Sbjct: 194 LRAEGIAAHSHPGALWQEPWTLTTEAGQPYRVFTPFWRKLRTSLSDCH----PLPAARPR 249

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI------------GEQNALHILRKFCKEKVYYYVEQ 233
             +T          P  AI  + PI            GE  A   L +F  E +  Y + 
Sbjct: 250 RWLTADG-----SIPIDAIGLLPPIRWDAGLAEAWRPGEAGAWERLEQFVDEALAEYGDA 304

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA  GTS+LS +L  G ++P Q    L+E         +     +L EL WREF  H
Sbjct: 305 RDAPARMGTSRLSAHLHFGEITPTQMLRTLQERVARTSDSDRPDLEPFLRELGWREFAHH 364

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           L+  +P       F    +   W   D   L  W+QG TG P++DA MRQL   GWMHNR
Sbjct: 365 LLYHFPHTTDAN-FDARFDTFAWAPDDDDQLARWQQGRTGIPLVDAGMRQLWQTGWMHNR 423

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RM  ASFL K+L   WR G  +F   L+D DLA+N  GWQW A  G D+ PYFR+FNP 
Sbjct: 424 VRMAVASFLTKNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPY 483

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVD 462
           +Q  RFDP   +++ WLPEL+ +P   +H P  W     L++  YP P++D
Sbjct: 484 LQAARFDPDAAYLKRWLPELSGLPADVLHRP--WKHPAALAVCGYPAPMID 532


>gi|170703393|ref|ZP_02894172.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10]
 gi|170131701|gb|EDT00250.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10]
          Length = 505

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 158/493 (32%), Positives = 249/493 (50%), Gaps = 31/493 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A ++++  +VW R+DLR+TD  AL  A   S   ++ V++    +     +      +
Sbjct: 1   MSAKSSVAPAVVWFRDDLRVTDQPALTRAV-ASGRPLVCVYLDDTGEGAGRALGGAARWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D
Sbjct: 60  LHGSLAALDAALARHGGRLLLLRG----DAQREIERVVHDTGAAAVYWNRRYAQPQRDAD 115

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L+  L+ R +  +S + S+L  P  ++  A   ++++T + +A+ ++   A    LP 
Sbjct: 116 AALKATLKARGLEVESSNGSLLNEPWEVMTGAGTPFQIFTAYWRAVRRDRTVA--APLPE 173

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGEQNALHI-LRKFCKEKV 227
           P      P       R       A+ P            +P  ++   H  L  F    +
Sbjct: 174 PERIAFHPWPAGMRERALALDTLALRPHAPDWAGGLRDAWPTPDEAGAHAGLDAFVHASL 233

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y + RD P    TS+LSP+L  G +SPRQ W+ ++           +GA  +L+EL W
Sbjct: 234 AGYADSRDRPGQPATSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEKFLSELGW 293

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF   L+  +P++     F    + + W  D   L+AW++G TG+P++DA MR+L T G
Sbjct: 294 REFSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTG 352

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNR+RM+ ASFLVK LL+DWR+GE +F   L+D D A+N   WQW A  G D+ PYFR
Sbjct: 353 WMHNRVRMVVASFLVKHLLIDWRVGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFR 412

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLP 459
           IFNP  QG++FDPQG ++R W+PEL  +    IHAP  W             L+L+YP P
Sbjct: 413 IFNPVTQGRKFDPQGAYVRRWVPELAGLDAAAIHAP--WEASTAQLAAAGVRLALDYPAP 470

Query: 460 IVDHKKACHHTLN 472
           IVDH  A    L+
Sbjct: 471 IVDHDGARRRALD 483


>gi|161521234|ref|YP_001584661.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
           17616]
 gi|189352592|ref|YP_001948219.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
           17616]
 gi|160345284|gb|ABX18369.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
           17616]
 gi|189336614|dbj|BAG45683.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
           17616]
          Length = 476

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 161/468 (34%), Positives = 237/468 (50%), Gaps = 26/468 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V  R DLR++D+ AL AAC   DA V+ V++ TP++       A    +++ SL 
Sbjct: 1   MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHTPDEDAIWSPGAASRWWLHHSLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L ++G      Q    D +I  + +         +++ R+YE   + RD  L+  
Sbjct: 60  SLDRALREQGGRLLAMQS---DPTIA-VPALARAVDAQGVYWTRRYEPAAIARDAALKST 115

Query: 127 LQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ + I   S+  ++   P ++   A Q Y+V+TPF + L  +L        P+PA R  
Sbjct: 116 LRAQGIAAHSYPGALWQEPWTLATDAGQPYRVFTPFWRKLRTSLSDCH----PLPAARPR 171

Query: 186 GPVTPSN---------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             +T  +         +PR   +     D   P GE  A   L +F  E +  Y + RD 
Sbjct: 172 RWMTTDDSTAVEALGLLPRI-RWDAGLADAWRP-GEGGAWERLEQFVDEALAEYGDARDA 229

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA  GTS+LS +L  G ++P Q    L+E         +     +L EL WREF  HL+ 
Sbjct: 230 PARLGTSRLSAHLHYGEITPTQILRTLQERVARTSGSVRPDLEPFLRELGWREFAHHLLY 289

Query: 297 FYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            +P       F    +   W   D   L  W+QG TG P++DA MRQL   GWMHNR+RM
Sbjct: 290 HFPHTTDAN-FDARFDAFAWAPDDGEQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRM 348

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL K+L   WR G  +F   L+D DLA+N  GWQW A  G D+ PYFR+FNP +Q 
Sbjct: 349 VVASFLTKNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQA 408

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVD 462
            +FDP   +++ WLPEL+ +P   +H P  W     L +  YP P+VD
Sbjct: 409 AKFDPDAAYLKRWLPELSRLPADVLHRP--WKHSAALAACGYPTPMVD 454


>gi|163756034|ref|ZP_02163150.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
 gi|161323908|gb|EDP95241.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
          Length = 433

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 161/472 (34%), Positives = 231/472 (48%), Gaps = 53/472 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN  LY A  NS  KVI +FI   +   +      +  FIY  L ++  
Sbjct: 7   LFWHRRDLRIEDNIGLYHAL-NSGKKVIPLFIFDSDILEKLPKDDARVTFIYEELEKINT 65

Query: 71  SLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +L       Q H  S        +E L+    +  ++ ++ N  YE   + RDK + + L
Sbjct: 66  TL-------QSHDASILVKHGKPLEVLEEIIGKHEISAVYTNHDYEPYAIARDKEVGELL 118

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I  K++ D V+     ++      Y +YTP+ K  +  L + D  S+   +     
Sbjct: 119 ASKNIEFKTYKDQVIFERNEVVKADGDPYIIYTPYSKKWLDKLTKNDYTSVDCASYYKNY 178

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL-RKFCKEKVYYYVEQRDIPAIQGTSQL 245
                N P   D  F A          +++ +L     +  +  Y + R+ PAI+GTS+L
Sbjct: 179 AKKSFNFPSLKDIGFTA----------SSIKVLPYTMAENMIDNYEDTRNFPAIEGTSRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G +S R+C        V   ++ ++  F  L EL+WREF+  ++  +P      
Sbjct: 229 SPHLRFGTISVRKC--------VQNGLQSENNVF--LKELVWREFFMQILWHFPKSVTNN 278

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    + I+W  D    +AW +G TG+P++DA MR+LN  G+MHNR+RMITASFL K L
Sbjct: 279 -FKSKYDGIKWRNDEDEYKAWCEGKTGYPLVDAGMRELNESGYMHNRVRMITASFLCKHL 337

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DW+ GE YF  +LLD DLA N G WQW A TG DS PYFRIFNPT Q K+FD   T+I
Sbjct: 338 LIDWKWGEAYFAKKLLDFDLAQNVGNWQWVAGTGCDSSPYFRIFNPTSQIKKFDKDHTYI 397

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             W  +                      L YP PIV+HK A    L+ Y + 
Sbjct: 398 NKWASDYQ-------------------ELTYPSPIVEHKFARERCLSTYKSG 430


>gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301]
 gi|118595452|sp|P05327|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301]
          Length = 484

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 170/481 (35%), Positives = 237/481 (49%), Gaps = 26/481 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L AA   S A++I +F   P+  +   ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRLSDNIGLAAARAQS-AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      Q     D    +     Q +   +++N+  E     RD  +   L+  
Sbjct: 65  RYQQAGSRLLLLQ----GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------LVQADLRSLPVPAIR 183
            I      D +L  P  IL+ +   Y VY PF K               +L  L    + 
Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              P+  S +P      F   D  FP+  GE  A+  L++FC   +  Y  QR+ PA  G
Sbjct: 181 AIAPLLLSELPTLKQLGFD-WDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAG 239

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           TS LSP L  G +  RQ W        +    + ++    W  EL WREFY+H +  +PS
Sbjct: 240 TSGLSPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPS 299

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G P+    ++  W     L  AW Q  TG+PI+DAAMRQL   GWMHNR  MI ASF
Sbjct: 300 LADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASF 358

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL++DWR GE++FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q K+FD 
Sbjct: 359 LTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDA 417

Query: 421 QGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDH---KKACHHTLNQYYA 476
             T+I+ WLPEL +V P   I    + + +      YP PIV+H   +K      NQ  A
Sbjct: 418 TATYIKRWLPELRHVHPKDLISGEITPIGRR----GYPAPIVNHNLRQKQFKALYNQLKA 473

Query: 477 A 477
           A
Sbjct: 474 A 474


>gi|86749484|ref|YP_485980.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris HaA2]
 gi|86572512|gb|ABD07069.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
           palustris HaA2]
          Length = 487

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 165/485 (34%), Positives = 245/485 (50%), Gaps = 34/485 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-------PEQWRQHGISARQSHFIYA 63
           +VW R+DLR++D+ AL+AA   S + +I +++         P Q R  G +AR   ++  
Sbjct: 10  IVWFRDDLRLSDHPALHAAA-ASGSPLICIYVHDEQSPQLRPPQARPIGGAARW--WLAQ 66

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DK 121
           SL  +   L Q+G      +      +   +     Q     + +N + EI   R   D 
Sbjct: 67  SLRALAAELEQRGARLILRRGP----AAAIVGELARQVDAAAVHWN-EIEIAPHRAIADD 121

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L E      +        +L+ P  I     +  +V+TPF + ++   +    + LP PA
Sbjct: 122 LAETLSMSGIDHHRHPGDLLVAPSEIRTKDGRGLRVFTPFWRRVLG--LGDPPKPLPAPA 179

Query: 182 IRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           +   GP   S+ P  +     A D        +  GE+ A  +L  F  +++  Y   RD
Sbjct: 180 MLRAGPDIASDDPATWQLEPTAPDWAGGLRASWTPGERAAHDLLTAFL-DRLPGYAADRD 238

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P    TS LSP+L  G +SPRQ W   +           +    +L+EL WREF RHL+
Sbjct: 239 RPDRDATSLLSPHLRFGEISPRQLWYAARFAAAKRPAI-AADIDKFLSELGWREFCRHLL 297

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +   +      +   W +D   L AW++G TG+PI+DA MRQL   G MHNR+RM
Sbjct: 298 HDHPDLAE-RNLQSAFDAFPWTRDDAALAAWQRGRTGYPIVDAGMRQLWHTGVMHNRIRM 356

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFLVK LL+DWR+GEE+F   L+D D  SN G WQW A +G D+ PYFR+FNP +QG
Sbjct: 357 VVASFLVKHLLIDWRLGEEWFWDTLVDADPGSNPGNWQWVAGSGADAAPYFRVFNPILQG 416

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKN----DLSLNYPLPIVDHKKACHH 469
           ++FDP G ++R W+PE+  +P ++IH P   + L++      L  NYP PIVDHK     
Sbjct: 417 EKFDPAGDYVRRWVPEIAALPNKFIHQPWTATLLERAAAGVALGGNYPAPIVDHKVGRAR 476

Query: 470 TLNQY 474
            L  Y
Sbjct: 477 ALAAY 481


>gi|91762930|ref|ZP_01264895.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (Photoreactivating enzyme) [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718732|gb|EAS85382.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (Photoreactivating enzyme) [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 473

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 161/492 (32%), Positives = 252/492 (51%), Gaps = 48/492 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW+R D RI  N+AL  A  N +  V A++I  P+ + +      Q  ++  SL  +  
Sbjct: 6   IVWIREDFRIEYNEALATATQNHEY-VSAIYIYNPKNFDKK--REAQKWWLSKSLENLSI 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQH 129
            L +  I  +        D +E L     +  VT +++++ YE + + + K +    +++
Sbjct: 63  DLKKLNITLEVQ----LGDELEVLSILKKKDDVT-VYWSKVYEPDVINKGKKIRDLFIKN 117

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  K F  ++L+    +       YKV+TPF K   Q+ +       P   IR+   + 
Sbjct: 118 EIQYKYFKGNILIEFQEMTKDDGTPYKVFTPFWKKTEQHYIS----KAPSKLIRVKSKIK 173

Query: 190 PSNI------------PRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             NI             + +   F+   DP     E+ A   L++    K+  Y + RDI
Sbjct: 174 KINIFKNSISIKEILPKKNWHKKFEKYWDP----SEKEAKKYLQELINNKIEDYGDARDI 229

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P + GTS+LSP+L  G +     W + +    D+ +K K G   ++NEL WREF   L+ 
Sbjct: 230 PGVNGTSKLSPFLKFGQIHVETIWKKCQ----DIKVK-KIGYRKYINELGWREFSHSLIN 284

Query: 297 FYPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++P +  G   K F    +   W K+   L+AWK G TG+PI+DA MR+L   GWMHNR+
Sbjct: 285 YFPQMLKGNLRKDF----DNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRV 340

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFLVK L + W  GE++F + L+D + ASN   WQW A  G D+ PYFRIFNP +
Sbjct: 341 RMIVASFLVKHLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPIL 400

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467
           QG++FD  G + + W+PEL N+P ++++ P     K        + +NYP PIVDH +A 
Sbjct: 401 QGEKFDKAGIYTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIVDHVEAR 460

Query: 468 HHTLNQYYAAKK 479
           +  L+ +   KK
Sbjct: 461 NAALDAFKTIKK 472


>gi|91217400|ref|ZP_01254360.1| deoxyribodipyrimidine photolyase-class I [Psychroflexus torquis
           ATCC 700755]
 gi|91184508|gb|EAS70891.1| deoxyribodipyrimidine photolyase-class I [Psychroflexus torquis
           ATCC 700755]
          Length = 457

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 158/474 (33%), Positives = 227/474 (47%), Gaps = 47/474 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V + W R D+R+ DN  LY A     + V+ +FI       +      +  FI+  L ++
Sbjct: 27  VRVFWFRRDMRLEDNVGLYHALSGVFS-VVPLFIFDKNILNELQEDDARISFIFEQLQKM 85

Query: 69  QKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  L       +  YH         E          V  ++ NR YE    +RD  +   
Sbjct: 86  RSHLQDHYGSSIATYHSTPE-----EAFHELLKDFEVEAVYTNRDYEPYAHQRDSKINTL 140

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L ++ I    F D V+     +  +   MY V+TP+ +   +     DL++ P     L 
Sbjct: 141 LANQGIEFHDFKDQVIFEKTEVEKNDGGMYLVFTPYMRQWKKEFENIDLKTFPSED-HLD 199

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                S +P         +     + + N         K+ + +Y + R+IP+I+GTS+L
Sbjct: 200 NTYKNSMLPDVSLSDMGFVKSSIQVPDYN-------ITKDLLEHYEDTRNIPSIEGTSRL 252

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G++  R+         +   +  K+  F  LNELIWREFY+ ++  +P      
Sbjct: 253 SPYLRFGLIGYRKL--------IQAALSVKNETF--LNELIWREFYKAILYNHPK-TQNS 301

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P  ++IEW  D +  + WK+G TG+PI+DA MRQLN  GWMHNRLRM+  SFL K L
Sbjct: 302 AFKPKYDRIEWRNDENEFEKWKKGKTGYPIVDAGMRQLNETGWMHNRLRMVVGSFLCKHL 361

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +LLD +++SN GGWQW A +G D+ PYFRIFNP  Q  RFD    +I
Sbjct: 362 LIDWRWGEAYFAEKLLDYEMSSNVGGWQWVAGSGVDAAPYFRIFNPYSQTDRFDKDKKYI 421

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
             W+PELN                   +  YP P+VDHK A    L  Y  A K
Sbjct: 422 MKWIPELN-------------------TDRYPKPMVDHKIARERCLETYKEAVK 456


>gi|254373077|ref|ZP_04988566.1| hypothetical protein FTCG_00652 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570804|gb|EDN36458.1| hypothetical protein FTCG_00652 [Francisella novicida GA99-3549]
          Length = 464

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 165/490 (33%), Positives = 254/490 (51%), Gaps = 56/490 (11%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           +  +++H  W R DLR+ DN ALY A    +   I +FI    Q    GI      +++ 
Sbjct: 2   SKKIAIH--WFRQDLRLADNPALYQASQADE--TITIFILDKNQ----GIGGASKLWLHY 53

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL  K   +         + +E +     +  +T  ++NR Y+   + RD  +
Sbjct: 54  SLNSLNSSLDNKLNFYS-------GNPLEIIRKIIKENNITDFYWNRCYDKYSIDRDTQI 106

Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQAD--- 173
           ++ LQ H++   SF+ S+L+ P          YKVYTPF K LI+      N+ + +   
Sbjct: 107 KQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSY 166

Query: 174 LRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
           LR L     + +++L  P           + +Q I   + IGE  +  IL +F   KV  
Sbjct: 167 LRKLNNSENLDSLKLLQP----------KHSWQNIIKQWQIGESASHQILEEFLDNKVKE 216

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   RD  +   TS+LSPYL  G +SP Q +N ++   +D +    +    ++ EL+WR+
Sbjct: 217 YKTARDFMSTDSTSKLSPYLHFGEISPNQIFNAVQS--LDYI---GNNEEHFIKELVWRD 271

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F  + + +YP +   K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+M
Sbjct: 272 FSYYQIYYYPEL-HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYM 330

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RMI ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIF
Sbjct: 331 HNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIF 390

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLPIV 461
           NP +Q ++F+    +IR ++PEL  +P + I  P  W      L +  ++L  NYP PIV
Sbjct: 391 NPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKP--WEASELVLQEAGITLGQNYPKPIV 447

Query: 462 DHKKACHHTL 471
           D KK+    L
Sbjct: 448 DLKKSRDRAL 457


>gi|71084006|ref|YP_266726.1| deoxyribodipyrimidine photo-lyase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71063119|gb|AAZ22122.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (Photoreactivating enzyme) [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 473

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 160/492 (32%), Positives = 252/492 (51%), Gaps = 48/492 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW+R D RI  N+AL  A  N +  V A++I  P+ + +      Q  ++  SL  +  
Sbjct: 6   IVWIREDFRIEYNEALATATQNHEY-VSAIYIYNPKNFDKK--REAQKWWLSKSLENLSI 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQH 129
            L +  I  +        D +E L     +  VT +++++ YE + + + K +    +++
Sbjct: 63  DLKKLNITLEVQ----LGDELEVLSILKKKDDVT-VYWSKVYEPDVINKGKKIRDLFIKN 117

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  K F  ++L+    +       YKV+TPF K   Q+ +       P   IR+   + 
Sbjct: 118 EIQYKYFKGNILVEFQEMTKDDGTPYKVFTPFWKKTEQHYIS----KAPSKLIRVKSKIK 173

Query: 190 PSNI------------PRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             NI             + +   F+   DP     E+ A   L++    K+  Y + RDI
Sbjct: 174 KINIFKNSISIKEILPKKNWHKKFEKYWDP----SEKEAKKYLQELINNKIEDYGDARDI 229

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P + GTS+LSP+L  G +     W + +    D+ +K K G   ++NEL WREF   L+ 
Sbjct: 230 PGVNGTSKLSPFLKFGQIHVETIWKKCQ----DIKVK-KIGYRKYINELGWREFSHSLIN 284

Query: 297 FYPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++P +  G   K F    +   W K+   L+AWK G TG+PI+DA MR+L   GWMHNR+
Sbjct: 285 YFPQMLKGNLRKDF----DNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRV 340

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFLVK L + W  GE++F + L+D + ASN   WQW A  G D+ PYFRIFNP +
Sbjct: 341 RMIVASFLVKHLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPIL 400

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467
           QG++FD  G + + W+PEL N+P ++++ P     K        + +NYP PI+DH +A 
Sbjct: 401 QGEKFDKDGIYTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIIDHVEAR 460

Query: 468 HHTLNQYYAAKK 479
           +  L+ +   KK
Sbjct: 461 NAALDAFKTIKK 472


>gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
 gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
          Length = 480

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 168/475 (35%), Positives = 244/475 (51%), Gaps = 31/475 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS+ L W R DLR+ DN  L AA +    KV+ +F   P       I+A +  ++   L 
Sbjct: 1   MSLRLFWHRRDLRLNDNLGL-AAAYTRTPKVVGLFCFDPAILSASDIAAVRVAYLVGCLQ 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++  + G  F   +     D  + L           + ++   E     RD+ +   
Sbjct: 60  ALQEAYRRLGGSFLIFR----GDPRQILPQVAKGLGAVAVHWHEDVEPYGRERDRAVAAA 115

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ + I  ++  D +L PP +I     Q Y VY+PF +    +L + +  S P     LT
Sbjct: 116 LKEKGIAVETAWDQLLHPPEAIQTKQGQPYTVYSPFWRNW-SSLAKPEPVSAPRHLEPLT 174

Query: 186 -------GPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                  G +    +P   D  F  + D +   GE  A   L  F  + +  Y EQR+ P
Sbjct: 175 EIEQATAGTLGAICLPTAKDLGFHWSGDLILAPGEAAAQAQLETFIDQHIQDYGEQRNYP 234

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMA 296
           A  GTS LSP L  GV+  R+ W   +        +    +  +W  EL WREFY+H + 
Sbjct: 235 AQPGTSLLSPALKFGVIGIRRVWTATQAAMAAARSEEAQRSIRTWQQELAWREFYQHALY 294

Query: 297 FYPSVCM-----GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           ++P +       G    PW      N ++H   AW +G TG+PI+DAAMRQLN  GWMHN
Sbjct: 295 WFPHLAERPHREGFATFPWL-----NNEAHFA-AWCEGRTGYPIVDAAMRQLNETGWMHN 348

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL KDL+++ + GE YFM +L+DGDLA+NNGGWQW+AS+G D  P  RIFNP
Sbjct: 349 RCRMIVASFLTKDLIINPQWGERYFMQKLIDGDLAANNGGWQWSASSGMDPKP-LRIFNP 407

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
             Q ++FDP+  +IR WLPE+ ++ T   +    S L+++     YPLPIVDH++
Sbjct: 408 ASQAQKFDPEAEYIRRWLPEVRSLDTIDLVTGNISPLERH--RCGYPLPIVDHRQ 460


>gi|172061140|ref|YP_001808792.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6]
 gi|171993657|gb|ACB64576.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6]
          Length = 500

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 162/489 (33%), Positives = 247/489 (50%), Gaps = 23/489 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A ++++  +VW R+DLR+TD  AL  A   S   ++ V++          +      +
Sbjct: 1   MSAKSSVAPAIVWFRDDLRVTDQPALTRAV-ASGRPLVCVYVDDTGDGAGRALGGAARWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ +L  +  +L++ G      +     D+   ++          +++NR+Y   +   D
Sbjct: 60  LHGALAALDAALARHGGRLLLLRG----DAQREIERVVHDTGAAAVYWNRRYAQPQRDAD 115

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSL- 177
             L+  L+ R +  +S + S+L  P  ++  A   ++V+T + +A+ ++ LV A L    
Sbjct: 116 AALKASLKARGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRLVAAPLPEPE 175

Query: 178 -----PVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
                P PA    R     T +  P   D+     D      E  A   L  F  E +  
Sbjct: 176 RIAFHPWPAAVRERALALNTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHESLAG 235

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RD P    TS+LSP+L  G +SPRQ W+ ++           +GA  +L+EL WRE
Sbjct: 236 YADTRDRPGESATSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEKFLSELGWRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F   L+  +P++     F    + + W  D   L+AW++G TG+P++DA MR+L T GWM
Sbjct: 296 FSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RM+ ASFLVK LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIF
Sbjct: 355 HNRARMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIF 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463
           NP  QG++FDPQG ++R W+PEL  +    IHAP              L L+YP PIVDH
Sbjct: 415 NPVTQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWDASAAQLAAAGVRLGLDYPAPIVDH 474

Query: 464 KKACHHTLN 472
             A    L+
Sbjct: 475 DGARRRALD 483


>gi|160902458|ref|YP_001568039.1| deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
 gi|160360102|gb|ABX31716.1| Deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
          Length = 462

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 239/465 (51%), Gaps = 30/465 (6%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASLLQVQKSL 72
            R DLR+ DN +L  A  + + +VI  FI    Q + +   +  +  F+ A L ++   L
Sbjct: 22  FRRDLRLEDNTSLIEALQSCE-RVIPAFIFDDRQIKDNDYKSDNAVQFMIACLKELNDQL 80

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRV 131
            Q      + +      + + ++S      +  +F N+ Y     +RD  ++   +  RV
Sbjct: 81  HQLNARLYFFEGL----TAKVVESLIKTLGIEAVFVNKDYTPFSKKRDNEIKAICERERV 136

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LTGPVT 189
             K   D +L  P  +L      Y  +T F    ++   + D+R       +   T  ++
Sbjct: 137 DFKEHFDVLLHEPTEVLKDNGMPYIKFTDF----LKKSKKIDVREPQKNKFKNYFTEEIS 192

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
            S   +   +P Q  + +   G +  L  + +  K K   Y E R+ P+I GT++LSP+L
Sbjct: 193 SSIALQVDKFP-QNENLILKGGRKEGLSYIERIVKLK--NYSETRNTPSIDGTTKLSPHL 249

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G +S R+ + ++ E F              + +L WR+F+ H++  +P V +G  F  
Sbjct: 250 KFGTVSVREVYGKVNENF--------GNEHEIITQLHWRDFFTHILYHFPHV-LGNSFKE 300

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
              +I+W  D    +AW  G TG+PI+DA MRQLN  GWMHNR+RMIT SFLVKDL +DW
Sbjct: 301 KYNQIQWENDVDKFKAWCTGRTGYPIVDAGMRQLNLTGWMHNRVRMITGSFLVKDLHIDW 360

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE+YF  +L+D D A NNG WQW ASTG D+ P+FRIFNP +Q ++FDP+  +I+ WL
Sbjct: 361 RWGEKYFAQRLVDYDPAINNGNWQWVASTGCDAQPFFRIFNPILQQQKFDPECNYIKTWL 420

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           PEL N+  + IH  +   D     ++YP PIVDHK A       Y
Sbjct: 421 PELTNLNLEQIHTLNIPKD-----IDYPTPIVDHKVASEKAKKLY 460


>gi|116071567|ref|ZP_01468835.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
 gi|116065190|gb|EAU70948.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
          Length = 477

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 168/473 (35%), Positives = 233/473 (49%), Gaps = 26/473 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG----ISARQSHFI 61
           A S  L W R DLR+ DN  + AA   S A V  V++  P           ++  +  F+
Sbjct: 2   AASRVLFWHRRDLRLADNLGIQAAVEISPA-VTGVYVLDPALIHPPQALPPMAPARLWFL 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL+++Q+     G      +     D ++ L     +     + +NR  E     RD+
Sbjct: 61  LESLIELQQRWRAAGSRLLILE----GDPVQMLPPLAERLSAEAVVWNRDVEPYSRERDR 116

Query: 122 LLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            + KRLQ        D D +L+ P  +   A   Y+VY PF +     +      ++  P
Sbjct: 117 QVAKRLQADGRQVVVDWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPTTIEAP 176

Query: 181 A--IRLTGPVTPSNIPRF---FDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           +  + L   + P   P      D+ FQ  +  P  P GE  AL  L  F    +  Y   
Sbjct: 177 SGLVDLDSSLVPEGDPLAALRHDHGFQGTEICPCRP-GESAALEQLTCFADGALSAYEPD 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYR 292
           R+ P + GTS LS  LS+G LSPRQ W   ++         +  A + W  EL WREFY+
Sbjct: 236 RNFPNVVGTSYLSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAVWEQELGWREFYQ 295

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             +  +P +  G P+     +  W  +     +W+ G TG PIIDAAMRQLN  GWMHNR
Sbjct: 296 QALFHFPELADG-PYREQWRRFPWENNEAWFSSWRDGMTGMPIIDAAMRQLNESGWMHNR 354

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  P  RIFNP 
Sbjct: 355 CRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPA 413

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHK 464
            Q  +FD  G +IR WLPEL +V T+  +      L++      YP P+++HK
Sbjct: 414 TQATKFDADGDYIRRWLPELRHVNTKDLLTGEIGGLERR----GYPEPLINHK 462


>gi|256425909|ref|YP_003126562.1| deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
 gi|256040817|gb|ACU64361.1| Deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
          Length = 434

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 167/473 (35%), Positives = 234/473 (49%), Gaps = 48/473 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
           +V+L WLR DLR+ D+ ALY A  + +  V+ VF+              R+  FI+  L 
Sbjct: 4   TVNLCWLRRDLRLLDHAALYHALKSGNP-VVPVFVFDTNILNDLDDKHDRRVTFIHDILE 62

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ LS+ G          +    +  + Y  +  V ++F N  YE   V+RD  + K 
Sbjct: 63  DLQEKLSKLGSTLDVF----YGTPQQAFEHYTREYDVQEVFTNIDYEPYAVKRDSDIAKI 118

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRL 184
           L+ + I    + D V+     +L    Q Y V+TP+ K     L    L+  PV    R 
Sbjct: 119 LKAKNIHFHLYKDHVIFDHSEVLKDNGQPYTVFTPYSKKWKSLLTDFYLKPYPVEKYFRN 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                   IP      FQA    FP      +++     K     Y + RDIP I+GTS 
Sbjct: 179 FYKQKAKKIPSLRALGFQAGFRGFP-----PVNVKDNILKN----YDKTRDIPGIEGTSH 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           L  +L  G +S R           DL  +  +   ++L ELIWR+F++ ++  +P V   
Sbjct: 230 LGVHLRFGTISIR-----------DLAERANTLNETFLGELIWRDFFQMILWHFPHVVT- 277

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F    + I+W  +    Q W  G TG+PI+DA MR+LNT G+MHNR+RMITASFL K 
Sbjct: 278 QSFRREYDNIQWRNNEKEFQRWCDGETGYPIVDAGMRELNTTGFMHNRVRMITASFLTKH 337

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +LLD DLA+NNG WQWAA  G D+ PYFR+FNPT+Q +RFDP   +
Sbjct: 338 LLIDWRWGEAYFAKKLLDYDLAANNGNWQWAAGCGCDAAPYFRVFNPTLQTQRFDPDFEY 397

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR W+PE                      L Y  P+V H++A    L  Y AA
Sbjct: 398 IRKWVPEFE-------------------ELTYVKPMVVHEQARKRVLEVYKAA 431


>gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 477

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 164/487 (33%), Positives = 249/487 (51%), Gaps = 24/487 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A S+ + W R DLR+ DN +L AA    D  V+ +FI   +    H   A    +++ +L
Sbjct: 2   ASSIIIHWFRQDLRLADNPSLVAAAQAGD--VLPLFILDDDNAGDHKTGAAGRSWLHHAL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL  K        C    D ++ +     +   + +F+NR YE   + RDK+L+ 
Sbjct: 60  NALNMSLDGK-------LCVMRGDPVDIIPKLVAKVGASGVFWNRCYEPWRIARDKMLKT 112

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L +  I  +SF+ S+L  P ++L      Y+V+TPF +    N     L      A++L
Sbjct: 113 NLTNNNIQVESFNGSLLWEPWTVLKGDGTPYRVFTPFYRRGCLNAAPPRLPLARPDAMQL 172

Query: 185 TG-PVTPSNIPRFF---DYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              P +  +I       D+ + A +   + IGE  A+  L  F +  +  Y + R+ PA 
Sbjct: 173 VADPESSMSIDALNLLPDHDWGAKMASHWQIGEAAAMTRLHDFVEGGLNGYKDGRNFPAR 232

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LS +L  G +SP   W    E+            F  L+EL WREF   L+  +P
Sbjct: 233 PHTSRLSAHLHWGEISPNMAWYAAIEKRDQAGFDNDIDVF--LSELGWREFSHSLLYHFP 290

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   +   P  +   W  D + L+AW+QG TG+PIIDA MR+L   G+MHNR+RMI  S
Sbjct: 291 HLPR-QNLQPKFDSFPWQSDDNALRAWQQGKTGYPIIDAGMRELWETGYMHNRVRMIVGS 349

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK+LL+ W  GE +F   L+D DLA+N+ GWQW A  G D+ PYFR+FNP  QG +FD
Sbjct: 350 FLVKNLLLHWHHGEAWFWDCLVDADLANNSAGWQWIAGCGADAAPYFRVFNPITQGTKFD 409

Query: 420 PQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSL--NYPLPIVDHKKACHHTLNQ 473
             G++ R ++PEL  +P +Y+     AP   L    ++L  +YP PIVD K++    L  
Sbjct: 410 ADGSYTRRFVPELATLPNKYLFSPWEAPALELQAAGITLGKDYPNPIVDVKRSREAALAA 469

Query: 474 YYAAKKQ 480
           +   + +
Sbjct: 470 FATTRVE 476


>gi|251772673|gb|EES53237.1| Deoxyribodipyrimidine photo-lyase [Leptospirillum
           ferrodiazotrophum]
          Length = 468

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 164/493 (33%), Positives = 242/493 (49%), Gaps = 65/493 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP----------EQWRQHGISARQSHF 60
           +VW R++LR++DN+ L  A    +  V+ V++  P          ++WR+          
Sbjct: 4   IVWFRHNLRLSDNRPLSLAA--KEGAVLPVYVHDPTLSLFPDRVRQRWRKR--------- 52

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              SL ++ +SL + G        S    S E L     + R  +++  R         D
Sbjct: 53  ---SLWELDRSLRKLGNRLHVFSGS----SCEILLKVATRVRAERVYAFRGL----TGED 101

Query: 121 KLLEKRLQHRVI-------CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
           + LE+RL++ +           FD   L PP          +K++TP+ +   Q+ +   
Sbjct: 102 RALEERLENELRKAGVSLHLTGFD--TLYPPDLAAEGRSSPWKIFTPYHRFCRQSFLPE- 158

Query: 174 LRSLPVPAIRLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
              LP P+   + P   S               F   +P    GE  A+H LR+F +  +
Sbjct: 159 -HPLPAPSRVDSLPSLASLGGEEEVGGAGEVVSFVGFEP----GEAGAMHCLREFLENSL 213

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y  +RD PA +GTS+LSP+L+ G +S R+   RL+E        P      +L EL W
Sbjct: 214 AGYASRRDYPAEEGTSRLSPHLASGEISVREIVQRLQESDA-----PGKDREKFLEELGW 268

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM-RQLNTI 346
           REF  HL+ F+P + +      W   +EW  D     AWK+G TGFP++DA M R+L   
Sbjct: 269 REFSAHLLFFHPEMLVDPLKKEWA-TMEWTSDEAGFLAWKEGRTGFPLVDAGMMRELAET 327

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+RM+ ASFLVK+L V W+ G  +F  +LLD D A+N   WQW A  G D+ PYF
Sbjct: 328 GWMHNRVRMVAASFLVKNLGVSWQSGSRWFAERLLDYDPANNAASWQWVAGCGIDAAPYF 387

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-----LSLNYPLPIV 461
           RIFNP +QG+R+DP G ++R +LPEL+ +P + IH P       D      S  YP PIV
Sbjct: 388 RIFNPVLQGQRYDPHGKYVRRFLPELSALPDEKIHLPRKQSSSADWERPASSQGYPEPIV 447

Query: 462 DHKKACHHTLNQY 474
           D  ++    L +Y
Sbjct: 448 DLSESREAALRRY 460


>gi|296448539|ref|ZP_06890415.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b]
 gi|296253957|gb|EFH01108.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b]
          Length = 477

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 174/468 (37%), Positives = 246/468 (52%), Gaps = 35/468 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+TDN AL AA     A ++A+FI   +     G +AR   +++ SL+ +  
Sbjct: 6   ILWFRRDLRLTDNLALAAAATTG-APLVALFILDEDDDPPLGGAARW--WLHHSLVSLTH 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L ++G+     +      S   L     +     +F++R YE   +RRD  +E  L+  
Sbjct: 63  DLRERGLSLTLRRGP----SAASLTRLVPETGARAVFWSRVYEPAALRRDGEIETMLRAS 118

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTGPV 188
            V  +SF  ++L  PG I +   + ++V+ PF +A  Q +V       P PA  RL    
Sbjct: 119 GVEAQSFSGALLFEPGEIRSAQGRAFRVFAPFWRA-AQAIVAP---GAPKPAPTRLRAAP 174

Query: 189 TPSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            P +         PR  D+     D   P GE  A   L  F ++ V  Y   RD PA  
Sbjct: 175 APRSERLEDWGLTPREPDWAGGLRDAWRP-GESGARARLDAFVEDGVRDYAAARDFPAKD 233

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LSP+L  G + PRQ W  +  E  D    P++   ++L EL WREF  H++  +PS
Sbjct: 234 NVSRLSPHLHWGEIGPRQVWRAI--EGAD---APRADIAAFLRELGWREFCHHILLDHPS 288

Query: 301 VCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +    P  P   +  W +D   L +AW +G TG+P +DA MRQL   GWMHNRLRMI AS
Sbjct: 289 LPEA-PLDPDFARFPWAQDDGTLFRAWARGATGYPFVDAGMRQLWLTGWMHNRLRMIVAS 347

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK LL+DWR GE +F   L+D DL+SN   WQWAA  G D+ PYFRIFNP +QG+++D
Sbjct: 348 FLVKHLLLDWREGERWFFDTLVDADLSSNAFNWQWAAGCGADAAPYFRIFNPVLQGEKYD 407

Query: 420 PQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIV 461
             G F+R ++PEL  +   YIH    AP   L +  + L   YPL I+
Sbjct: 408 ADGAFVRRFVPELARLDAHYIHRPWTAPEQKLREAGVRLGETYPLAII 455


>gi|6118527|gb|AAF04135.1|AF191033_3 DNA photolyase [Mycobacterium smegmatis]
          Length = 431

 Score =  249 bits (635), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 162/469 (34%), Positives = 228/469 (48%), Gaps = 50/469 (10%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +WLR DLR+ D  AL AA    D+ V+  F+  P   R  G   R+  F++ SL ++   
Sbjct: 1   MWLRRDLRLGDLPALQAARGTDDSSVLLCFVVDPRLARSSG--ERRLAFLFDSLRELDDK 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L  + +V +             +D+  +        + R       RRD+ + + L   V
Sbjct: 59  LDGRLLVVRGRPDEEIPRLARAVDAEAVHISADFTPFGR-------RRDEAVAEALGE-V 110

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
             ++     L+ PG I     + YKV+TPF +    +  +    S  VP+  +  P   +
Sbjct: 111 PLEATGSPYLVSPGRITKDDGEPYKVFTPFFRRWRDHGWRRPAES-SVPSSAVVDPADIA 169

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
           N  R    P   +   FP GE  A     +F    +  Y E RD PA   TS++S YL  
Sbjct: 170 NSGRIA-VPTAPVKLSFPAGEDAARQRWAEFVDADLADYDEIRDDPAADATSRMSAYLKY 228

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G + PR          VDL      GA ++L EL +R+FY  ++  +P          W 
Sbjct: 229 GNIHPRTL-------AVDL--GKGKGAQAYLRELAFRDFYADVLWHWPHSLWHN----WN 275

Query: 312 EK---IEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +   IE + D       + WK G TGFP++DA MRQLN  GWMHNR+RMITASFLVKDL
Sbjct: 276 RRFDAIELDTDDAAYERFEVWKAGRTGFPLVDAGMRQLNETGWMHNRVRMITASFLVKDL 335

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W  G EYF+ QL+DGD+ASNN GWQWAA TG D+ PYFR+FNP  Q K+FDP+G ++
Sbjct: 336 HLPWWWGAEYFLEQLVDGDMASNNHGWQWAAGTGTDAAPYFRVFNPQTQAKKFDPKGEYV 395

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           R W+ ++                    + +YP PIVDH       L +Y
Sbjct: 396 RRWVGDVE-------------------ADDYPGPIVDHSAERAEALRRY 425


>gi|196231423|ref|ZP_03130282.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428]
 gi|196224759|gb|EDY19270.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428]
          Length = 468

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 164/473 (34%), Positives = 238/473 (50%), Gaps = 29/473 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  + W R DLRITDN AL AA    D +V+ V+I +  +       A +  F+   L 
Sbjct: 1   MSTAIHWFRRDLRITDNTALAAAAAAHD-QVVPVYIVSEWKAEHRWCGAPRQAFLCGCLD 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125
            + ++L  KG      Q     D++  L     Q     +++NR  +       ++L + 
Sbjct: 60  SLARNLEAKGGRLIIRQGRA--DAV--LKKLVQQTEAEAIYFNRDPDPFGRAMEERLTKI 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                +    + D  L     +L      +KV+TP+ KA ++          P P   ++
Sbjct: 116 ARDLGIRLHPYKDIALHERNEVLTGGGSPFKVFTPYAKAWLK-------LDKPEPTRAIS 168

Query: 186 GPVTPSNI-----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
              TP +I     P    +       +   GE  A   L  F    +++Y  +RD+PA +
Sbjct: 169 KLSTPPHIASDPLPTLHTWKLVGEAAILEPGEAAARKRLGCFLDGPIFHYQTRRDLPAEE 228

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS+LS  L  G LS R+ + +            +     ++NELIWREFY  ++  +P 
Sbjct: 229 GTSRLSQDLRHGTLSIREVYAKCARAAEKAPAAHQRNIGIFINELIWREFYLQVLWHWPQ 288

Query: 301 VCMGKPFIPWTEKIEW-------NKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           V +   F     +++W        KD     Q W +G TGFPI+DA MRQL   G+MHNR
Sbjct: 289 V-LDHEFQEDCRRLKWRDYWRPEKKDGGQDYQRWCRGETGFPIVDAGMRQLAATGFMHNR 347

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI A FL KDL V W  GE +FM  L+DG++ASNNGGWQW+ASTG D+ PYFRI NP 
Sbjct: 348 VRMIVAMFLTKDLHVWWMHGESWFMRHLVDGEIASNNGGWQWSASTGTDAAPYFRIQNPW 407

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
            Q KRFDP+G +I+ W+PEL +VP   + AP    +   L+ +YPLP+VDH +
Sbjct: 408 SQSKRFDPEGAYIKRWVPELRDVPAGQLCAPPK--EGEALARDYPLPMVDHAR 458


>gi|254374529|ref|ZP_04990010.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
 gi|151572248|gb|EDN37902.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
 gi|332678425|gb|AEE87554.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1]
          Length = 464

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 164/490 (33%), Positives = 254/490 (51%), Gaps = 56/490 (11%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           +  +++H  W R DLR+ DN ALY A    +   I +FI    Q     I +    +++ 
Sbjct: 2   SKKIAIH--WFRQDLRLADNPALYQASQADE--TITIFILDKNQ----DIGSASKLWLHH 53

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL  K   +         + +E +     +  +T  ++NR Y+   + RD  +
Sbjct: 54  SLNSLNSSLDNKLNFYS-------GNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQI 106

Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQAD--- 173
           ++ LQ H++   SF+ S+L+ P          YKVYTPF K LI+      N+ + +   
Sbjct: 107 KQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSY 166

Query: 174 LRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
           LR L     + +++L  P           + +Q I   + IGE  +  IL +F   KV  
Sbjct: 167 LRKLNNSENLDSLKLLQP----------KHSWQNIIKQWQIGESASHQILEEFLDNKVKE 216

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   RD  +   TS+LSPYL  G +SP Q +N ++   +D +    +    ++ EL+WR+
Sbjct: 217 YKTARDFMSTDSTSKLSPYLHFGEISPNQIFNAVQS--LDYI---GNNEEHFIKELVWRD 271

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F  + + +YP +   K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+M
Sbjct: 272 FSYYQIYYYPEL-HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYM 330

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RMI ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIF
Sbjct: 331 HNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIF 390

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLPIV 461
           NP +Q ++F+    +IR ++PEL  +P + I  P  W      L +  ++L  NYP PIV
Sbjct: 391 NPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKP--WEASELVLKEAGITLGQNYPKPIV 447

Query: 462 DHKKACHHTL 471
           D KK+    L
Sbjct: 448 DLKKSRDRAL 457


>gi|118497711|ref|YP_898761.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           novicida U112]
 gi|194323683|ref|ZP_03057459.1| deoxyribodipyrimidine photolyase family protein [Francisella
           tularensis subsp. novicida FTE]
 gi|208779776|ref|ZP_03247120.1| deoxyribodipyrimidine photolyase family protein [Francisella
           novicida FTG]
 gi|118423617|gb|ABK90007.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
 gi|194322047|gb|EDX19529.1| deoxyribodipyrimidine photolyase family protein [Francisella
           tularensis subsp. novicida FTE]
 gi|208744231|gb|EDZ90531.1| deoxyribodipyrimidine photolyase family protein [Francisella
           novicida FTG]
          Length = 464

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 164/490 (33%), Positives = 254/490 (51%), Gaps = 56/490 (11%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           +  +++H  W R DLR+ DN ALY A    +   I +FI    Q     I +    +++ 
Sbjct: 2   SKKIAIH--WFRQDLRLADNPALYQASQADE--TITIFILDKNQ----DIGSASKLWLHH 53

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL  K   +         + +E +     +  +T  ++NR Y+   + RD  +
Sbjct: 54  SLNSLNSSLDNKLNFYS-------GNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQI 106

Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQAD--- 173
           ++ LQ H++   SF+ S+L+ P          YKVYTPF K LI+      N+ + +   
Sbjct: 107 KQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSY 166

Query: 174 LRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
           LR L     + +++L  P           + +Q I   + IGE  +  IL +F   KV  
Sbjct: 167 LRKLNNSENLDSLKLLEP----------KHSWQNIIKQWQIGESASHQILEEFLNNKVKE 216

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   RD  +   TS+LSPYL  G +SP Q +N ++   +D +    +    ++ EL+WR+
Sbjct: 217 YKTARDFMSTDSTSKLSPYLHFGEISPSQIFNAVQS--LDYI---GNNEEHFIKELVWRD 271

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F  + + +YP +   K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+M
Sbjct: 272 FSYYQIYYYPEL-HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYM 330

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RMI ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIF
Sbjct: 331 HNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIF 390

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLPIV 461
           NP +Q ++F+    +IR ++PEL  +P + I  P  W      L +  ++L  NYP PIV
Sbjct: 391 NPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKP--WEASELVLQEAGITLGQNYPKPIV 447

Query: 462 DHKKACHHTL 471
           D KK+    L
Sbjct: 448 DLKKSRDRAL 457


>gi|91774219|ref|YP_566911.1| deoxyribodipyrimidine photo-lyase type I [Methanococcoides burtonii
           DSM 6242]
 gi|91713234|gb|ABE53161.1| Deoxyribodipyrimidine photolyase [Methanococcoides burtonii DSM
           6242]
          Length = 467

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 168/495 (33%), Positives = 242/495 (48%), Gaps = 52/495 (10%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFI 61
           T+ ++  L   R D+R+ DN AL AA   SD  VI  FI  P      G   ++    F+
Sbjct: 2   TSRLNRSLFVFRRDMRVDDNSALLAALDMSDV-VIPCFILDPRLCDPKGKAFNSNALQFL 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  ++  L +  +  + +  S   + +  +        +  +F N  Y    ++RD 
Sbjct: 61  LESLYDLKGQLEK--VNGRLYLFSGLPEGV--IGQLLENLEIDAVFVNHDYTPFSIKRD- 115

Query: 122 LLEKRLQHRVICKS-------FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
                +Q   IC         F D +L  PGSI       YKV+T F +       +A  
Sbjct: 116 -----MQIASICTDKGVDMLQFHDCLLHEPGSIRTKKGTPYKVFTQFFR-------EASK 163

Query: 175 RSLPVPAIRLTGP-------VTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKE 225
           R + VP++   G        V   +   F        +    +  G  N L +L+     
Sbjct: 164 RDVAVPSMFSGGSFFTGDCGVDEVDEGSFLKRSLPERNEQIFVHGGRANGLSVLQSL--S 221

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           +   Y  +RD+P+++GT+ LS +  +G +S R        EF   +I       + +NEL
Sbjct: 222 QFVNYDTERDLPSVKGTTGLSAHNKLGTISIR--------EFYYSVIDELGRGHTLINEL 273

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR+F+  +   +P V     F    + + W+ D     AW  G TGFPI+DA MR+LNT
Sbjct: 274 YWRDFFTQISFEFPDV-FKHAFKKKFDHLSWDNDRIFFDAWCLGKTGFPIVDAGMRELNT 332

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+MHNR+RMI ASFLVKDL +DW+ GE YF S+L+D D   NNG WQWAASTG DS PY
Sbjct: 333 TGYMHNRVRMIVASFLVKDLHIDWKRGERYFASKLVDYDPCVNNGNWQWAASTGADSQPY 392

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHK 464
           FRIFNP +Q K+FD    +I+ W+PEL ++  Q IH     L+K D+ +  YP PIVDH 
Sbjct: 393 FRIFNPWLQQKKFDKDCKYIKKWIPELEDIEPQRIHK----LEKGDMDIPGYPAPIVDHS 448

Query: 465 KACHHTLNQYYAAKK 479
           K     L  + AA +
Sbjct: 449 KEREVALFMFKAASQ 463


>gi|260753965|ref|YP_003226858.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258553328|gb|ACV76274.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 469

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 164/485 (33%), Positives = 253/485 (52%), Gaps = 50/485 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH----FIYASLL 66
           L+W R+D R+ DN A+ AA  + +  VI  +I       Q    A+  +    ++  SLL
Sbjct: 8   LIWFRHDFRLRDNAAITAAIQSRNP-VICFYI-------QESADAKTENAADWWVAESLL 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEK 125
            + + L +KG      Q   F+   E +    +QQ    KLF+NR+Y+      D++L+K
Sbjct: 60  ALNRQLKEKG-----GQLHLFEGDAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKK 114

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIR 183
            ++   +  +SF +++L  P ++ N   Q +++++ + +A+ +++ +QA    LP P   
Sbjct: 115 SIRAMGLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRHMNIQA---VLPCPENW 171

Query: 184 LTGPVTPSNIPRFFDYPFQAI------DPMFPI--------GEQNALHILRKFCKEKVYY 229
           +    +   I     Y   AI      D  + I        GE  A   L+ F +  + +
Sbjct: 172 V---FSTREIRHCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHERLKSFIENDLAH 228

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y ++RD PA  GTS LS +L  G +S +Q W+ + +           G   +L EL WRE
Sbjct: 229 YAKERDFPAKDGTSLLSAFLRSGQISSKQIWHEVTKN------GSGEGTSKFLAELGWRE 282

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F   ++  +P +   +   P  +K+ W K S  LQ WK+G TG+P IDA MR L   G+M
Sbjct: 283 FAWSVLWEHPDLNQ-RNLRPEFDKMPWEKASDNLQRWKEGQTGYPFIDAGMRALWQTGFM 341

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            NRLRM+TASFLVK LL+DWR GE++F   L+D D A N   WQW A +G +S PYFRI 
Sbjct: 342 PNRLRMVTASFLVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIM 401

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
           NP +Q ++FDP G +IR W+ EL +V T +IH P      +    NYPLPI+ H++    
Sbjct: 402 NPILQSQKFDPDGQYIREWVKELADVSTAFIHTP---WKADKQPANYPLPIIAHEEGRDR 458

Query: 470 TLNQY 474
            L  +
Sbjct: 459 ALRAW 463


>gi|284034972|ref|YP_003384902.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
 gi|283814265|gb|ADB36103.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
          Length = 438

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 167/478 (34%), Positives = 233/478 (48%), Gaps = 58/478 (12%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA------RQSHFIY 62
           + LVWLR DLR+ DN ALY A   S   VI VFI     + +  + A      R+  F+ 
Sbjct: 5   LSLVWLRRDLRLHDNAALYYAL-KSGRPVIPVFI-----FDRVILDALDDRLDRRVEFLV 58

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             + ++   L++ G           D   E +++Y     +  +F N  YE     RDK 
Sbjct: 59  QEVNRLHDELAKLGSTIIVRYGKPVDVWKELIETYT----IGDVFTNHDYEGYAKERDKA 114

Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           + + L  R I   +  D  +     +L+     Y V+TP+ +     L    L+S P   
Sbjct: 115 IGELLAERGIGFHTSKDQAIFERDEVLSGKKTPYTVFTPYSRKWKDTLTDFYLKSYPTEN 174

Query: 182 IRL-TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI- 239
                    P       D  FQ +   FP  E  +  +L          Y E RD PA+ 
Sbjct: 175 YSSHYWQTKPEPAITLADMGFQPVGEPFP-AETVSDKLLDT--------YNETRDFPALP 225

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TSQLS +L  G +S R+   + K           +   ++LNEL WR+FY  ++  +P
Sbjct: 226 HSTSQLSIHLRFGTISIRELARQAK----------AADDQTFLNELCWRDFYFQVLDHFP 275

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V     F    ++IEW  +      W +G TG+PI+DA MRQLNTIGWMHNR+RMITAS
Sbjct: 276 HVEQ-YSFRREYDQIEWRNNEDEFDKWCRGETGYPIVDAGMRQLNTIGWMHNRVRMITAS 334

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DWR GE YF  +L D DL++NNGGWQWAA +G D+ PYFR+FNPT Q +RFD
Sbjct: 335 FLCKHLLIDWRWGEAYFGKKLRDYDLSANNGGWQWAAGSGTDAAPYFRVFNPTAQAQRFD 394

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           P+  +IR W+PE++                     +YP P+VDH  A    ++ Y  A
Sbjct: 395 PKSVYIRQWVPEVDKP-------------------SYPKPMVDHAMARQRAIDTYRKA 433


>gi|255531982|ref|YP_003092354.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366]
 gi|255344966|gb|ACU04292.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366]
          Length = 434

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 163/478 (34%), Positives = 237/478 (49%), Gaps = 54/478 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLLQ 67
           V + W R DLR+ DN  LY A  +S   V+ +FI       + G    R+  +I  +LL+
Sbjct: 5   VSIFWFRRDLRLEDNVGLYHAL-SSGFPVLPIFIFDENILGKLGDKKDRRVDYIDQALLK 63

Query: 68  VQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEK 125
           +   L   K  +  +H      + IE  +    Q  V  +F NR YE   ++RD ++ E 
Sbjct: 64  INTQLKLSKTRLNTFH-----GNPIEIFNMLSEQYAVQAVFCNRDYEPLTIQRDVEIYEF 118

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             ++++  K+F D V+     +L +    Y VYTP+ K   + L +   RS         
Sbjct: 119 FKRNQIPFKAFKDQVIFDKSDVLKNDGTPYTVYTPYSKKWKELLKEEHYRSYH------- 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR--KFCKEKVYYYVEQRDIPAIQGTS 243
                 +   FF   F  I  +  IG +         K     +  Y + RD PA+Q T+
Sbjct: 172 -----PDYNNFFRQEFTGIHSLNDIGFEKTDIAFETPKLTTTIIDEYDKYRDYPAMQRTT 226

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QL   L  G +S R+C        V   +K      +WLNELIWREF+  ++  +P V +
Sbjct: 227 QLGIALRFGTISIRKC--------VAFGLKHNQ---TWLNELIWREFFMQILYHFPKV-V 274

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F    + I+W  + H    W +G TG+PI+DA MRQLN  G+MHNR+RMI ASFL K
Sbjct: 275 DQSFKSKYDNIKWRNNEHEFDRWCEGKTGYPIVDAGMRQLNQTGFMHNRVRMIAASFLCK 334

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF  +L D DL++NNG WQWA+ +G DS PYFR+FNPT+Q ++FD    
Sbjct: 335 HLLIDWRWGEAYFAQKLNDYDLSANNGNWQWASGSGCDSAPYFRVFNPTLQTEKFDKNFA 394

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +++ W+PE                     + NYP PIV+H  A    L  Y  A K++
Sbjct: 395 YLKKWIPEFE-------------------TENYPEPIVEHSFARERALKTYGNAIKEN 433


>gi|292490401|ref|YP_003525840.1| deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4]
 gi|291578996|gb|ADE13453.1| Deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4]
          Length = 477

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 162/457 (35%), Positives = 238/457 (52%), Gaps = 39/457 (8%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIY 62
           A    LVW R DLR+ DN AL AAC     +VI V+I  PE+   W     S    H   
Sbjct: 2   AQPTALVWFRRDLRLGDNPALAAAC-ALGGQVIPVYIDAPEEEGAWPPGAASRWWQHHSL 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           A+L    K  + + IV Q         S + L     +   T +F+NR+YE   ++RD+ 
Sbjct: 61  AALDSGLKKRNSRLIVRQ-------GPSHKALGQLAEETSATHIFWNRRYEPAVIKRDQA 113

Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------------- 168
           ++++L+   +  KS +  +L  P  I  +    Y+++TPF K  ++              
Sbjct: 114 IKQQLRAAGLTVKSTNALLLFEPWEIAKNDGMPYRIFTPFWKTCLEKGIGRSPFPPPQHL 173

Query: 169 -LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
             V   L+S P+  + L  P  P +         Q     +  GE  A      F +E +
Sbjct: 174 PPVNRQLQSEPLSTLGLL-PKIPWD---------QEFYTHWTPGEAGAWRQWECFLEEAL 223

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y ++RD P + GTS+LSP+L  G +SPRQ   +++ + +D   +  +G  ++L +L W
Sbjct: 224 GKYHQERDRPDLPGTSRLSPHLHFGEISPRQIAFQIQIQ-MDRRAELTAGGQAYLRQLGW 282

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           REF  HL+  +P     KP         W +D    L AW+QG TG P++DA MR+L   
Sbjct: 283 REFAYHLLYHFPETPE-KPLNEGFTHFPWAEDYGEALTAWQQGRTGIPLVDAGMRELWRT 341

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+RMI AS L K+L + W+ GE +F   L+D DLASN  GWQW A  G D+ PYF
Sbjct: 342 GWMHNRVRMIAASLLTKNLRIPWQEGERWFWETLVDADLASNTLGWQWVAGCGADAAPYF 401

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           R+FNP +QGK+FDP+G +++ W+PEL  +  Q+IH P
Sbjct: 402 RVFNPVLQGKKFDPEGKYVQQWIPELRKISKQHIHEP 438


>gi|256372081|ref|YP_003109905.1| Deoxyribodipyrimidine photo-lyase [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008665|gb|ACU54232.1| Deoxyribodipyrimidine photo-lyase [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 456

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 159/486 (32%), Positives = 237/486 (48%), Gaps = 53/486 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + ++WLR DLR  D+ A ++     DA   AVF+  P   R H    R++ ++  +L ++
Sbjct: 1   MRVLWLRGDLRSYDH-AGWSELGIGDA---AVFVLDPGLAR-HASPIRRA-WLAGALGEI 54

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
                 +  +               L +       T++  ++       RR     + L+
Sbjct: 55  DDWTDHRLSLLHARHGDE-------LAAIFAAWGATEVLTHQGVAPGIRRRIDATRRSLE 107

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R I  +  D +  + PGS+       ++V+  F +                PA+   GP
Sbjct: 108 ARGIALRVVDSAYAVAPGSLTRPEGGAWRVFGAFWRQW-------------RPAVHGLGP 154

Query: 188 VTPSNIP------RFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              +  P      R F+ P     P  P+   ++ AL  L +F   ++ +Y   RD PA+
Sbjct: 155 FEATAPPSLAVTERHFE-PADLRPPDQPLLTPQRTALERLERFVDSRLAHYAADRDRPAV 213

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             TS+LSP L IG + PR     L + +  D  ++          EL WREFY H +  +
Sbjct: 214 AATSELSPALHIGAIHPRTILAALGDLDRADRFVR----------ELAWREFYAHALWHH 263

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P + +     P   +I W++        +AW  G TGFPI+DA MR+L   GW+HNR+RM
Sbjct: 264 PDL-VDLELDPTLRQIAWDEGDEADARFRAWCDGRTGFPIVDAGMRELAATGWLHNRVRM 322

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I AS LVKDL +DWR G  +F + L D D+ASN G WQW A TG D+ PYFR+FNPT+QG
Sbjct: 323 IVASLLVKDLHLDWRRGAAWFEATLADADIASNRGNWQWVAGTGLDAAPYFRVFNPTLQG 382

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           K+FDP G ++R W+PEL   PT  IH P  W+ + +    YPLPIVDH +     L +Y 
Sbjct: 383 KKFDPDGHYVRRWVPELRACPTSLIHEPWRWVGREN--AGYPLPIVDHDRERREALARYD 440

Query: 476 AAKKQS 481
           AA+  +
Sbjct: 441 AARASA 446


>gi|87300679|ref|ZP_01083521.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
 gi|87284550|gb|EAQ76502.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
          Length = 499

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 181/490 (36%), Positives = 234/490 (47%), Gaps = 57/490 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN  L AA   + A V  VF+  P       +S  +  F+  SL ++Q 
Sbjct: 7   LFWHRRDLRLADNLGLAAAARAT-AAVTGVFVFDPALLDAPDLSPARLWFLSESLRELQG 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      +     D  E L           + +NR  E +   RD+ + + L+  
Sbjct: 66  RWREAGSRLLLLR----GDPAEVLPQLAQAAGAQVVAWNRDVEPDGRARDRRVAEALRAG 121

Query: 131 VICKSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-----PVPAIR 183
             CK   D   +L+PP ++   A   Y+VY PF ++  + + QA   +      P   I 
Sbjct: 122 G-CKLLADWDQLLVPPDALATGAGDPYRVYGPFFRSWRRRIEQAGAEACAPVAAPASLID 180

Query: 184 LTGPVTPSNIPRFFD-----------------YPFQAID--PMFPIGEQNALHILRKFCK 224
           L     P+   R +D                  PF   D  P  P GE  A   L  F  
Sbjct: 181 LDPAALPAERRRLWDQLNWLETVPTPGDGLPGAPFAGADLCPCRP-GEAAAAAQLAAFAD 239

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR---------QCWNRLKEEFVDLLIKPK 275
             +  Y   R++PA  GTS LS  L  G LSPR         +   R +EE   + +   
Sbjct: 240 GPLLGYEPGRNLPAEPGTSGLSAALRFGTLSPRQAWAAAQQQRPRARSEEELQSITV--- 296

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
                W  EL WREFY+  +  +P +  G P+ P      W  D     AW  G TG PI
Sbjct: 297 -----WEQELAWREFYQQALFHFPELAEG-PYRPQWRHFPWENDEGRFAAWCDGLTGVPI 350

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DAAMRQLN  GWMHNR RMI ASFLVKDL+VDWR GE  FM  L+DGDLA+NNGGWQW+
Sbjct: 351 VDAAMRQLNDSGWMHNRCRMIVASFLVKDLIVDWRWGERQFMRLLVDGDLAANNGGWQWS 410

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSL 454
           AS+G D  P  RIFNP  Q  RFDP+ T+IR WLPEL+ V T   I    + L++     
Sbjct: 411 ASSGMDPKP-LRIFNPYTQAARFDPEATYIRRWLPELSRVATADLIRGEIAPLERR---- 465

Query: 455 NYPLPIVDHK 464
            YP PIVDHK
Sbjct: 466 GYPGPIVDHK 475


>gi|126728554|ref|ZP_01744369.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
 gi|126710484|gb|EBA09535.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
          Length = 472

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 173/485 (35%), Positives = 234/485 (48%), Gaps = 46/485 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--------ATPEQWRQHGISARQSHFIY 62
           LVW R DLR++D+ AL  A   S   VI VFI         T  QWR           + 
Sbjct: 8   LVWFRRDLRLSDHAALTEAA--SGGPVIPVFIRDALVDGLGTAPQWR-----------LG 54

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L    ++L  KG             ++E L     +     ++++R Y+ + V RD  
Sbjct: 55  LGLKSFAEALEAKGSRLILRSGP----AVEVLSELVNETGAKAVYWSRAYDPDSVDRDTR 110

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LP 178
           +++ L+   I  +SF   +L  P ++       YKVYTPF KA+    V A L S   L 
Sbjct: 111 VKETLKGDGIDAQSFTGHLLFEPWTVETGQGGFYKVYTPFWKAVRGCDVPAALSSPSDLQ 170

Query: 179 VPAIRLTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            PA    G       + +        + P   +GEQ A   L  F ++KV  Y   RD  
Sbjct: 171 APATWPDGETLADWELGKGMRRGADVVRPYVQLGEQAAQTRLGVFMRDKVADYATTRDEV 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           +  GTS LS  LS+G +SP QCW+       D     K GA ++L EL+WREF  HLM  
Sbjct: 231 SKDGTSCLSENLSLGEISPAQCWHAGCRAIED----GKPGAETFLKELVWREFAYHLMWH 286

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            P +  G     W +   W  D  L  ++AWKQG TG P +DAAMR+L   G MHNR RM
Sbjct: 287 TPRLLDGNWRQEW-DGFPWKTDERLREVKAWKQGRTGIPFVDAAMRELYVTGRMHNRARM 345

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I AS+L K L+  W+IG  +F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q 
Sbjct: 346 IVASYLTKHLMCHWKIGMAWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPVTQR 405

Query: 416 KRFDPQGTFIRHWLPELNNVPT----QYIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHH 469
           ++FDP   ++  W+ E    P+     Y  A P SW +   D    YP PIVD K+    
Sbjct: 406 EKFDPDCAYVTRWIAEGRKSPSDTALSYFDAIPESWPMAPGDA---YPDPIVDPKEGREA 462

Query: 470 TLNQY 474
            L+ Y
Sbjct: 463 ALDAY 467


>gi|189202516|ref|XP_001937594.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984693|gb|EDU50181.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 534

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 153/488 (31%), Positives = 243/488 (49%), Gaps = 48/488 (9%)

Query: 17  DLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
           DLRI DN AL+ A     ++   ++ +++  P     HG SA +  F+   L  +QK L 
Sbjct: 56  DLRIQDNTALHHASELAQSAKKPLVCIYVDCPADESWHGTSAARVDFMCEGLKIMQKELK 115

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133
              I   + QC +    +E    +  +Q+V+ +F N +YEI+E+RRD  L K +  ++  
Sbjct: 116 DLNIPLVFLQCEDRKKIVETAVEWVKKQQVSHVFGNYEYEIDEMRRDLKLVKTVGDKIQV 175

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-VPAIRLTGPVTPSN 192
             + D  ++ PG++L       K++TP+ KA +     A LRS P +    L     PS+
Sbjct: 176 SLYHDQTVVEPGTMLTGTGTPMKIFTPYHKAWL-----AKLRSEPELLDNNLPPAANPSS 230

Query: 193 IPR----FFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           + +     FD P                + I  ++P G   A   +  F K+ + +Y   
Sbjct: 231 MKKDLKDLFDTPAPKPASDKQFASDEEKKRIRKLWPAGHSAASARMDSFLKQ-ISHYAAT 289

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQC------WNRLKEEFVDLLIKPKSGAFSWLNELIW 287
           R  PA   TS++S Y S G++S R        +NR   +F +   K  +G + W+ E+++
Sbjct: 290 RSNPAANSTSRMSAYFSAGMISMRSTLQKVVDYNRGSTDFTE--AKASTGVYGWVREIVF 347

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE YR      P   M  P     + ++W  D    + W +G TG P IDA MRQLN   
Sbjct: 348 RELYRQTTMTTPHTSMNLPQNLKFDAVQWEDDEEGWEKWYKGQTGEPFIDAGMRQLNAEA 407

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM  +S+L  +LL+D+R GE YF   L+D DL++N  GW+          P + 
Sbjct: 408 YMHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYT 457

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKA 466
           +FNP  Q ++ DP G +IR W+PEL +V  + + AP++ L K +   L YP P VD K+ 
Sbjct: 458 VFNPVSQAEKNDPDGEYIRKWVPELKHVKGKAVFAPYARLSKEEFEKLGYPKPHVDWKET 517

Query: 467 CHHTLNQY 474
               ++++
Sbjct: 518 KARAIDRF 525


>gi|328544427|ref|YP_004304536.1| Deoxyribodipyrimidine photolyase family [polymorphum gilvum
           SL003B-26A1]
 gi|326414169|gb|ADZ71232.1| Deoxyribodipyrimidine photolyase family [Polymorphum gilvum
           SL003B-26A1]
          Length = 480

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 162/489 (33%), Positives = 233/489 (47%), Gaps = 37/489 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLRI DN AL+ A        + V    P     H + A    +++ SL  + +
Sbjct: 4   LVWFRQDLRIADNPALFEAAARGSVLPVFVLDEGPGD-NTHPLGAASRWWLHHSLEALAR 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L +  +V  +       D    +        V  + +NR YE + VRRD  L+  L   
Sbjct: 63  DLGR--LVLLH------GDPQRLIPELARAAGVGAVHWNRCYEPHAVRRDTALKAALIAA 114

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V  +SF+ ++L  P  +       +KV++P+ +A +   V   L   P   I       
Sbjct: 115 GVEVRSFNAALLNEPWELETKTGGPFKVFSPYWRAALARPVATPLPRPPRLEI-----AA 169

Query: 190 PSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                R  D+  +   P        ++  GE  A   L  F +  +  Y   RD P +  
Sbjct: 170 GQAGDRLDDWRLRPTAPDWAAGWRDLWHPGEAGAAERLEHFLEAGLDGYATLRDRPDLSH 229

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S+LSP+L  G +SPRQ   R +          +  A  +L E+ WREF  HL+  +P +
Sbjct: 230 VSRLSPHLHFGEVSPRQVVARTRFA-AGRTPGLERDADKFLAEIGWREFSHHLLYHFPRL 288

Query: 302 CMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
               P   W    +   W   S  L  W++G TG+P++DA MR+L   G+MHNR+RM+ A
Sbjct: 289 ----PERNWKSTFDAYPWRDSSGDLAVWQRGQTGYPMVDAGMRELWATGYMHNRVRMLAA 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK L +DWR+GE +F   L+D DLA+N  GWQW A +G D+ PYFRIF+P  QG+RF
Sbjct: 345 SFLVKHLRLDWRLGEAWFRDTLVDADLANNAAGWQWVAGSGADAAPYFRIFSPVGQGRRF 404

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLN 472
           DP G ++R W PEL  +P  ++HAP             +L   YP PIVDH  A    L 
Sbjct: 405 DPGGAYVRRWCPELARLPDDHVHAPFDAPAVVLKAAGVELGRTYPHPIVDHAAARAEALA 464

Query: 473 QYYAAKKQS 481
            Y A ++  
Sbjct: 465 GYEAVRRAG 473


>gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
 gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
          Length = 477

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 234/468 (50%), Gaps = 26/468 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQH--GISARQSHFIYASLL 66
           L W R DLR+ DN  + AA   S A V  V++  P   Q  Q    ++  +  F+  SL+
Sbjct: 7   LFWHRRDLRLADNLGIQAAVEISPA-VTGVYVLDPALIQPPQSLPPMAPARLWFLLESLI 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+     G      +     D ++ L     +     + +NR  E     RD+ + KR
Sbjct: 66  ELQQRWRAAGSRLLILE----GDPVQVLPPLAERLGAEAVVWNRDVEPYSRERDRQVAKR 121

Query: 127 LQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IR 183
           LQ        D D +L+PP  +   A   Y+VY PF +     +      ++  P+  + 
Sbjct: 122 LQADGRKVVVDWDQLLIPPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPITIEAPSGLVD 181

Query: 184 LTGPVTPSNIPR---FFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           L   + P   P       + FQ  +  P  P GE  AL  L  F    +  Y   R+ P+
Sbjct: 182 LHSDLVPDRDPLAALLHRHGFQGTEICPCRP-GESAALEQLTLFADGPLSGYEPDRNFPS 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAF 297
           + GTS LS  LS+G LSPRQ W   ++         +  A + W  EL WREFY+  +  
Sbjct: 241 VVGTSYLSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAVWEQELGWREFYQQALFH 300

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +  G P+     +  W  +     +W++G TG PIIDAAMRQLN  GWMHNR RMI 
Sbjct: 301 FPELADG-PYREQWRRFPWENNEAWFSSWREGMTGMPIIDAAMRQLNESGWMHNRCRMIV 359

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q  +
Sbjct: 360 ASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQATK 418

Query: 418 FDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHK 464
           FD  G +IR W+PEL +V T+  +      L++      YP P++ HK
Sbjct: 419 FDADGEYIRRWVPELRHVNTKDLLTGEIGGLERR----GYPEPLITHK 462


>gi|254430204|ref|ZP_05043907.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
 gi|197624657|gb|EDY37216.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
          Length = 504

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 182/502 (36%), Positives = 240/502 (47%), Gaps = 51/502 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A T     L W R DLR+ DN  L AA   + A V  VF+  P       ++  +  F
Sbjct: 1   MAAETGAERWLFWHRRDLRLADNLGLAAAAAATPA-VTGVFVLDPGILEAADLAPARLWF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL ++ +     G      +     D    L       R   L +NR  E     RD
Sbjct: 60  LAESLRELAERWRAAGSRLLVLR----GDPAVVLPQLAAALRAPVLAWNRDVEPYGRERD 115

Query: 121 KLLEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRS 176
           + +   LQ    RV+     D +L+ P ++       Y+VY PF R    Q   +ADL S
Sbjct: 116 RRVAAALQAEGRRVLVDW--DQLLIAPEALRTGQGDPYRVYGPFWRNWRGQVAARADLGS 173

Query: 177 L------PVPA---IRLTGPVTPSNIPRFFDYPFQAIDP----------MFP-------- 209
                  PV A   +R  G      + R    P   ++P           FP        
Sbjct: 174 AAAGGLEPVAAPTGLRDLGEPELQALHRSTASPLPLVEPDAATGLHLPHSFPGADLCPCR 233

Query: 210 IGEQNALHILRKFCKEK-----VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
            GE  A   L+ FC        +  Y + R++P   GTS LS  L  G LSPRQ W   +
Sbjct: 234 PGEAAAQEQLQAFCDGGCDGGPLLAYEQGRNLPGEAGTSGLSAALKFGTLSPRQAWAAAQ 293

Query: 265 EEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
           +            + + W  EL WREFY+  +  +P +  G P+ P  ++  W  D    
Sbjct: 294 QARALARSTEAEQSITVWEQELAWREFYQQALFHFPELAEG-PYRPQWKRFPWENDEGRF 352

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +AW+QG TG PI+DAAMRQLN  GWMHNR RMI ASFLVKDL+ DWR GE  FM+QL+DG
Sbjct: 353 EAWRQGLTGMPIVDAAMRQLNESGWMHNRCRMIVASFLVKDLICDWRWGERAFMAQLVDG 412

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHA 442
           DLA+NNGGWQW+AS+G D  P  RIFNP  Q  +FDP+ ++IR WLPEL +V T   I  
Sbjct: 413 DLAANNGGWQWSASSGMDPKP-LRIFNPATQATKFDPEASYIRTWLPELRHVATADLISG 471

Query: 443 PHSWLDKNDLSLNYPLPIVDHK 464
               L++      YP PIV+HK
Sbjct: 472 AIPPLERR----GYPEPIVEHK 489


>gi|15790367|ref|NP_280191.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
 gi|10580849|gb|AAG19671.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
          Length = 489

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 164/494 (33%), Positives = 235/494 (47%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAAC-------HNSDAKVIAVFIATPEQWRQHGI 53
           M A     + L W R DLR TDN+ L AA           D   +A      ++   H  
Sbjct: 1   MPAAQPPGMQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLAHAA 60

Query: 54  SARQSHFI--YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
             R +  +   A+L +  + L    IV          D    L +       T++ +N  
Sbjct: 61  PPRVAFMLDALAALRERYRDLGSDLIV-------RHGDPAAVLPAVANDLDATRVVWNHD 113

Query: 112 YEINEVRRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNL 169
           Y      RD  +   L    +  + F D+V   PG I  +A   Y VYT F RK   +  
Sbjct: 114 YSGLATDRDAGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREK 173

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKE-KV 227
                   P      T     S +P   +  F   +   P  G   A  +L  F +   +
Sbjct: 174 NPPAPEPEPADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDI 233

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELI 286
           Y Y ++RD P  + TS+LSP+L  G +  R  +   +    D      +    +++ +L 
Sbjct: 234 YRYEDRRDYPHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLA 293

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREFY  ++ F  +V + + F  +   IEW  D   LQAWK G TG+PI+DA MRQL   
Sbjct: 294 WREFYAQVLYFNQNV-VSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAE 352

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
            +MHNR+RMI A+FL KDLLVDWR G ++F  +L D D A++NGGWQWAASTG D+ PYF
Sbjct: 353 AYMHNRVRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYF 412

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHK 464
           R+FNP  QG+R+DP   +I  ++PEL +VP   IH+ H  S  ++   +  YP PIVDH 
Sbjct: 413 RVFNPMTQGERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHS 472

Query: 465 KACHHTLNQYYAAK 478
           +     +  +  A+
Sbjct: 473 QRREDAIAMFERAR 486


>gi|189346874|ref|YP_001943403.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
 gi|189341021|gb|ACD90424.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
          Length = 473

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 166/498 (33%), Positives = 248/498 (49%), Gaps = 52/498 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           +++H  W R DLR+ DN +LY A       V+ V+I          +      +++ SL 
Sbjct: 5   LTIH--WFRQDLRLEDNPSLYYAALK--GSVLPVYILDDRNAGDFRMGGANRWWLHHSLE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + +SL  +  +          D +E L +       TK+++NR YE   + RD  L+ +
Sbjct: 61  SLNRSLQGRLTLL-------MGDPLEILPALAASTGATKVYWNRCYEPWRISRDTRLKHK 113

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRL 184
           L+ + +  +S++ S+L  P  +       YKV+TPF +   +  + A    +P+P  ++L
Sbjct: 114 LREQGITAESYNGSMLWEPWEVHKSDGTPYKVFTPFYR---KGCLSAASPRMPLPLPVKL 170

Query: 185 TGPVTPSN---------IPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
             P  P           +PR  +D   + ++P + IGE  AL  L  F K  +  Y E R
Sbjct: 171 DCPSPPEESLPLEALGLLPRIRWD---RQLEPHWTIGENGALERLAIFLKHGLPGYREGR 227

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYR 292
           D PA    S+LSP L  G +SP Q W+          I   SG     + +EL WREF  
Sbjct: 228 DFPARPNVSRLSPSLHFGEISPNQAWHGA--------IAAGSGIDLDHFQSELAWREFSY 279

Query: 293 HLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            L+   P +    + K F    ++  W ++   L  W+QG TG+PI+DA MR+L   G+M
Sbjct: 280 SLLYHNPGLPEKNLQKSF----DRFPWEENPAALMRWQQGLTGYPIVDAGMRELWQTGYM 335

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM+  SFLVK+LL+ W  GE +F   L D DLA N+  WQW A  G D+ PYFRIF
Sbjct: 336 HNRIRMVAGSFLVKNLLLHWHEGESWFRDCLADADLAINSASWQWIAGCGADAAPYFRIF 395

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDH 463
           NP  QG++FD  G++ R +LPEL  +P +Y+     AP S L    ++    YP PIVD 
Sbjct: 396 NPVTQGQKFDADGSYTRRYLPELARLPDRYLFSPWEAPVSVLADAGIATGKTYPEPIVDL 455

Query: 464 KKACHHTLNQYYAAKKQS 481
           K +    L  Y   +  S
Sbjct: 456 KSSRRQALEAYALTRNHS 473


>gi|325003004|ref|ZP_08124116.1| deoxyribodipyrimidine photo-lyase [Pseudonocardia sp. P1]
          Length = 464

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 161/482 (33%), Positives = 232/482 (48%), Gaps = 33/482 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A S  +VW R DLR+ D +  + A  ++  + +A+F+  P      G + R  +F+Y  L
Sbjct: 2   ASSTAVVWFRRDLRVAD-QPTFLAAADAADRALALFVLDPALLDPSGAARR--NFLYGCL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++  +L  + +V +             + +  +        Y R+       RD+ +EK
Sbjct: 59  RELDSALGGRLLVVKGDPADVVPRVATAVGADTVHVAADYGPYGRE-------RDEQVEK 111

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L               + PG +       +KV+TPF +A  ++  +A   +       +
Sbjct: 112 ALTDAGAELVRTGSPYAVAPGRVTKGDGDPFKVFTPFSRAWAEHGWRAPAETSASTCTWM 171

Query: 185 TGPVTPSNIPRFFDYPF-QAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             P      PR    P  +  D   P  GE  A      F  E V  Y  QRD+PA +GT
Sbjct: 172 D-PSGKGGGPRAVQVPADEPCDSALPDAGETAAAARWADFLDEGVAEYESQRDMPAKKGT 230

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S +SPYL  G + PR           DL  +      ++  E+ WREFY  ++   P   
Sbjct: 231 SGMSPYLKYGCVHPRTL-------LADLGSRRGDSVKAYRTEIAWREFYADVLYRRPDSA 283

Query: 303 -----MGKPFIPW-TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                 G   +P  T++  ++     L+ WK G TGFPI+DA MRQL    WMHNR+RM+
Sbjct: 284 RRNYDTGFDHLPLRTDEAAYDD----LERWKDGRTGFPIVDAGMRQLRAEAWMHNRVRMV 339

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFLVKDL + W  G  +FM  L+DGDLASN  GWQW A +G D+ PYFRIFNP  QG+
Sbjct: 340 VASFLVKDLHLPWWWGARHFMQLLVDGDLASNQHGWQWTAGSGTDAAPYFRIFNPITQGE 399

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           RFDP G ++R W+PEL +VP + +H P  W  K+ L   YP  +V+HK      L +Y A
Sbjct: 400 RFDPDGDYVRRWVPELADVPGKAVHQP--WKLKDGLPDGYPERMVEHKAEREEALARYEA 457

Query: 477 AK 478
            K
Sbjct: 458 VK 459


>gi|307825778|ref|ZP_07655994.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
           SV96]
 gi|307733086|gb|EFO03947.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
           SV96]
          Length = 453

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 166/467 (35%), Positives = 227/467 (48%), Gaps = 42/467 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASLL 66
           S  L   R DLR+ DN AL  A   S  +VI  FI  P Q   H   ++    F+  S+ 
Sbjct: 5   STSLFIFRRDLRLQDNTALLEALRLS-GQVIPCFIFDPRQIEPHPYQSKPGLQFMLQSIQ 63

Query: 67  QVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +Q+ L S  G +  YH         + +     QQ++  +F NR Y     RRD  L  
Sbjct: 64  DLQQQLQSAGGKLALYHALPE-----QVVRQLVEQQQIQAVFINRDYTPFSRRRDDELA- 117

Query: 126 RLQHRVICKSFDDSVLLPPGSILN---HALQM----YKVYTPFRKALIQNLVQADLRSLP 178
                 +CK    ++   P S+LN    A++M    YKV+T F     Q  V     +LP
Sbjct: 118 -----AVCKQLGIALHTLPDSLLNEPEQAVKMDKTPYKVFTAFYNNAKQFPV-----ALP 167

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              ++       S             +P    G + AL IL +        Y+  RD PA
Sbjct: 168 EVLVKSNFLAAASEF-TIDQLDLSVTEPAIKGGRKQALAILDRLGD--YVDYLNTRDFPA 224

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  TS+LS +L  G  S R+ +  + E+               + +L WR+F+ H+   +
Sbjct: 225 LDATSKLSAHLKFGTCSVREVFYAITEQL--------GSEHPLIRQLYWRDFFTHIAYHF 276

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V  G+ F+     + W+ +    QAW  G TGFPI+DA MR+LN  G+MHNR+RMITA
Sbjct: 277 PQV-FGRAFLEKFADLTWDNNPDYFQAWCDGKTGFPIVDAGMRELNATGYMHNRVRMITA 335

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDL +DWR GE YF   L+D D   NNG WQW ASTG D+ PYFRI NP +Q  +F
Sbjct: 336 SFLVKDLHIDWRWGERYFARHLVDYDPCVNNGNWQWTASTGCDAQPYFRILNPWLQQLKF 395

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           D    +I  WLPEL   P + I   H W DK   + +YP PI+DH +
Sbjct: 396 DQDCRYIYRWLPELQAFPPKTI---HQW-DKKHSACSYPAPIIDHAR 438


>gi|56552346|ref|YP_163185.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543920|gb|AAV90074.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 469

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 161/481 (33%), Positives = 251/481 (52%), Gaps = 42/481 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R+D R+ DN A+ AA  + +  VI  +I      +    +     ++  SLL + +
Sbjct: 8   LIWFRHDFRLRDNAAITAAIQSRNP-VICFYIQESADAKTESAA---DWWVAESLLALNR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            L +KG      Q   F+   E +    +QQ    KLF+NR+Y+      D++L+K ++ 
Sbjct: 64  QLKEKG-----GQLHLFEGDAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRA 118

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187
             +  +SF +++L  P ++ N   Q +++++ + +A+ +++ +QA    LP P   +   
Sbjct: 119 MGLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRHMNIQA---VLPCPENWV--- 172

Query: 188 VTPSNIPRFFDYPFQAI------DPMFPI--------GEQNALHILRKFCKEKVYYYVEQ 233
            +   I     Y   AI      D  + I        GE  A   L+ F +  + +Y ++
Sbjct: 173 FSTREIRHCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKE 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA  GTS LS +L  G +S +Q W+ + +           G   +L EL WREF   
Sbjct: 233 RDFPAKDGTSLLSAFLRSGQISSKQIWHEVTKN------GSGEGTSKFLEELGWREFAWS 286

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P +       P  +K+ W K S  LQ WK+G TG+P IDA MR L   G+M NRL
Sbjct: 287 VLWEHPDLNQHN-LRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRL 345

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+TASFLVK LL+DWR G+++F   L+D D A N   WQW A +G +S PYFRI NP +
Sbjct: 346 RMVTASFLVKHLLIDWREGKKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPIL 405

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q ++FDP G +IR W+ EL +V T +IH P      +    NYPLPI+ H++  +  L  
Sbjct: 406 QSQKFDPDGQYIREWVKELADVSTAFIHTP---WKADKQPANYPLPIIAHEEGRNRALRA 462

Query: 474 Y 474
           +
Sbjct: 463 W 463


>gi|134302129|ref|YP_001122098.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049906|gb|ABO46977.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 464

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 163/490 (33%), Positives = 253/490 (51%), Gaps = 56/490 (11%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           +  +++H  W R DLR+ DN ALY      +   I +FI    Q     I +    +++ 
Sbjct: 2   SKKIAIH--WFRQDLRLADNPALYQVSQADE--TITIFILDKNQ----DIGSASKLWLHH 53

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  SL  K   +         + +E +     +  +T  ++NR Y+   + RD  +
Sbjct: 54  SLNSLNSSLDNKLNFYS-------GNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQI 106

Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQAD--- 173
           ++ LQ H++   SF+ S+L+ P          YKVYTPF K LI+      N+ + +   
Sbjct: 107 KQFLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSY 166

Query: 174 LRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
           LR L     + +++L  P           + +Q I   + IGE  +  IL +F   KV  
Sbjct: 167 LRKLNNSENLDSLKLIEP----------KHSWQNIIKQWQIGESASHQILEEFLDNKVKE 216

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   RD  +   TS+LSPYL  G +SP Q +N ++   +D +    +    ++ EL+WR+
Sbjct: 217 YKTARDFMSTDSTSKLSPYLHFGEISPNQIFNAVQS--LDYI---GNNEEHFIKELVWRD 271

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F  + + +YP +   K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+M
Sbjct: 272 FSYYQIYYYPEL-HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYM 330

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RMI ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIF
Sbjct: 331 HNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIF 390

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLPIV 461
           NP +Q ++F+    +IR ++PEL  +P + I  P  W      L +  ++L  NYP PIV
Sbjct: 391 NPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKP--WEASELVLQEAGITLGQNYPKPIV 447

Query: 462 DHKKACHHTL 471
           D KK+    L
Sbjct: 448 DLKKSRDRAL 457


>gi|254481485|ref|ZP_05094729.1| deoxyribodipyrimidine photolyase family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214038113|gb|EEB78776.1| deoxyribodipyrimidine photolyase family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 483

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 162/494 (32%), Positives = 246/494 (49%), Gaps = 42/494 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+TD   L+AA   S   VI  FI   E   +  +      +++ SL  + K
Sbjct: 8   IYWFRRDLRLTDLPGLHAAL-ASGKPVIPCFILDDESTEEWAMGGASRWWLHHSLQALTK 66

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           S++++G      +     D+   L++   +     ++ +  YE +    +K L + L + 
Sbjct: 67  SVAEQGGNLLVRR----GDTQAQLNALVNETGAAAVYCSELYEPDARELEKTLGEELAKS 122

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI------- 182
                    ++   P  + N +   +KV+TPF +  +Q L      S+P+P         
Sbjct: 123 GAALHCLPGTLFFRPHEVRNGSGLPFKVFTPFWRHCMQRLP-----SMPLPQKTTFTTNS 177

Query: 183 ----RLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                LTG ++        D P  A D    +  GE  A   L++F    +  Y + RD 
Sbjct: 178 FLQHSLTG-LSCEQWQLLPDSPNWAADWHSYWTPGEAGATETLKQFVTNTLADYAQGRDF 236

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRH 293
           PA   +S+LS +   G +SPRQ W  + +        P S       +L+EL WR+F  H
Sbjct: 237 PARDASSRLSAHFHWGEISPRQAWAAVNK-------APGSNEKDQHKFLSELGWRDFNHH 289

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L+  +P +   +PF P   ++ W       +AW +G TG+PI+DA MR+L   G+MHNR+
Sbjct: 290 LLFHFPHIA-DRPFKPSFSQMPWQGSDETFKAWCEGRTGYPIVDAGMRELWQTGFMHNRV 348

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL K LL+ W+ G  +F   L+D DLA+N+GGWQW A  G D+ P+FRIFNP +
Sbjct: 349 RMICASFLTKHLLLPWQWGARWFWDTLVDADLANNSGGWQWVAGCGADASPWFRIFNPML 408

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKAC 467
           QGK+FD  G ++R WLPEL  +  + +     AP   L    ++L  +YP PIVDHK+A 
Sbjct: 409 QGKKFDGDGEYVRRWLPELAGLSDRDLQIPWEAPPLVLADAGVTLGSDYPFPIVDHKEAR 468

Query: 468 HHTLNQYYAAKKQS 481
              L+ Y A  K S
Sbjct: 469 VAALDAYDAVSKAS 482


>gi|296283766|ref|ZP_06861764.1| deoxyribodipyrimidine photolyase [Citromicrobium bathyomarinum
           JL354]
          Length = 467

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 169/492 (34%), Positives = 252/492 (51%), Gaps = 50/492 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--RQHGISARQSHFIYASL 65
           S  +VWLR DLR+ DN ALYAA       +I VF+   E+   R++G ++R   +++ SL
Sbjct: 3   SPQIVWLRRDLRLADNPALYAAAQA--GPIIPVFVLDDERTGDRKYGDASRW--WLHHSL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + +S  +        +     DS+  L     +   + +  NR YE    +    L+K
Sbjct: 59  ESLARSFGRHNASLILRRG----DSVNILADLAAKTGASAIHANRHYEPWWRKAQGDLKK 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRL 184
            L      +  D + L+P G+    +   YK+YTPF + +   +   D   LP P  I  
Sbjct: 115 ALPEGCDLELHDGNYLMPLGTATTGSGDPYKIYTPFSRTMRDLMPPRD--DLPAPETISQ 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            G + PS+     D+     +P         + IGE +A H    +  + V  Y E R++
Sbjct: 173 PGDLPPSD--DLADWSLLPTNPDWSTEMAKFWSIGE-DAAHERLDWWADHVGEYDEGRNL 229

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P++  TSQ+SP+L  G +SP Q W+R+K++  D       G  ++ +ELIWR++ ++++ 
Sbjct: 230 PSVDQTSQMSPHLHWGEISPVQIWHRMKDKRSD-------GWRTYESELIWRDYAQNVLC 282

Query: 297 FYPSVCMGKPFIPWTEKIEWNK------DSHLLQ----AWKQGYTGFPIIDAAMRQLNTI 346
            +P      P   + + I+  K        H++Q    AW+ G TG+PI+DA MRQL  I
Sbjct: 283 QFPRY----PEESYRDAIDDAKLWRNPNRGHVIQEELEAWQYGRTGYPIVDAGMRQLWAI 338

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+RMI ASFL+K LL+DWR GE +F   L+D D ASN   WQW A TG DS  + 
Sbjct: 339 GWMHNRVRMIAASFLIKHLLIDWRHGERWFWDTLVDADYASNGTNWQWVAGTGVDSNMFP 398

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           RI  P  Q ++FD   ++IR W+PEL ++P   IH P      ND    YP  I+ HK+A
Sbjct: 399 RIMAPLSQSEKFD-AASYIREWVPELADLPDSEIHDPSDKCRPND----YPAKIIGHKEA 453

Query: 467 CHHTLNQYYAAK 478
               L  Y A K
Sbjct: 454 RERALEAYRAMK 465


>gi|84684767|ref|ZP_01012667.1| deoxyribodipyrimidine photolyase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667102|gb|EAQ13572.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2654]
          Length = 475

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 160/493 (32%), Positives = 244/493 (49%), Gaps = 38/493 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + S  ++W R DLR++D+ AL+AA +     VI +FI         G+ A     +   L
Sbjct: 2   SASTVILWFRRDLRLSDHPALWAAANA--GLVIPLFIRDQSV---DGLGAAAKWRLGEGL 56

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
               ++L  +G+     + +  D     L     +   T++ ++R Y+   + RD  ++ 
Sbjct: 57  RVFGEALEDRGLKLILRRGNARDV----LREVIEETGATEVHWSRLYDPEAIERDTDVKS 112

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   ++ +S    ++  P ++       YKVY+PF +A+    V       P+P   L
Sbjct: 113 ALKEAGIVAESHPGHLIFEPWTVETQTGGPYKVYSPFWRAVKDRDVDE-----PLPTPDL 167

Query: 185 TGPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           TGP +  +     D+   A        +      GE+ A   L  F  +K+  Y   RD+
Sbjct: 168 TGPESWPDSDDLADWALGADMNRGAGVLAKYCNPGERAATSRLGSFVAQKIDAYKADRDL 227

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA   TS++S YL+ G +SPRQ W          +   K+GA  +L E++WREF  HL+ 
Sbjct: 228 PAEDATSRMSEYLTYGEISPRQLWA----AGARAMDAGKAGAEHYLKEVVWREFAYHLLY 283

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            +P +        W +   W +D  L  ++AWKQG TG P +DAA+R++   G+MHNR R
Sbjct: 284 HFPQMLTENWREGW-DDFPWREDERLAEVKAWKQGRTGVPFVDAALREMYVTGYMHNRAR 342

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI AS+L K  ++ WR+G+ +F   L D D ASN  GWQW A  G D+ PYFR+FNP  Q
Sbjct: 343 MIVASYLTKHCMIHWRVGQAWFDDCLTDWDPASNAMGWQWVAGCGPDAAPYFRVFNPETQ 402

Query: 415 GKRFDPQGTFIRHWLPELNNVP----TQYIHA-PHSWLDKNDLSLNYPL-PIVDHKKACH 468
           G++FDP+GT+ + W+ E    P    T Y  A P SW  K +   NYP  P+V  K+   
Sbjct: 403 GEKFDPKGTYQKRWIAEGQTSPPETATDYFEAIPRSW--KMEPGGNYPREPVVGLKEGRE 460

Query: 469 HTLNQYYAAKKQS 481
             L  Y A  K S
Sbjct: 461 AALAAYEARPKAS 473


>gi|299135199|ref|ZP_07028390.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
 gi|298590176|gb|EFI50380.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
          Length = 485

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 170/503 (33%), Positives = 244/503 (48%), Gaps = 42/503 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQ 57
           M A  A ++  VW R+DLR++D+ AL AA  ++ A +I +++    +  +HG   + A  
Sbjct: 1   MNAPAATAI--VWFRDDLRLSDHAALIAA-RDAGATLICLYVLDDTETGKHGPRSLGAAA 57

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             ++  SL  +   L + G     H      D+ E L     +     +F+       E 
Sbjct: 58  QWWLANSLRALDTDLKKLG----QHLVLRRGDAHEVLPKLAREANAKAVFWIDSEVSAEA 113

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            R + + + L+   +      S LL  P SI N      +V+TPF K +     Q +   
Sbjct: 114 ARARDVAEALKEIGVEVHVSASDLLASPQSIRNKEGHGLRVFTPFWKRV---RAQGEP-P 169

Query: 177 LPVPAIR-LTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKV 227
            P+ A+R L  PV         D+  +   P         +  GE  A   L  F    +
Sbjct: 170 RPLAAVRKLPPPVVSLKSENLEDWQLEPTRPDWAGGFRETWTPGEAGAHRRLHDFLDGAI 229

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNEL 285
             Y E RD P     S LSP+L  G +SPRQ ++  R   E    L +       +L+EL
Sbjct: 230 KGYAEGRDFPGKDHASHLSPHLRFGEISPRQVFHAARFAAERHPALSRDIE---KFLSEL 286

Query: 286 IWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            WREF RHL+  +P +    +   F    +   W +D+  L+AW+QG TG+PI+DA MR+
Sbjct: 287 GWREFCRHLLFDHPDLHRHNLQSSF----DDFPWRRDAKALRAWQQGRTGYPIVDAGMRE 342

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G M NR+RM+TASFLVK LL+DWR GE++F   L+D D  SN G WQW A  G D+
Sbjct: 343 LWHTGAMQNRIRMVTASFLVKHLLLDWRDGEQWFWDTLVDADPGSNPGNWQWVAGCGADA 402

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456
            PYFRIFNP +QG++FDP G ++  W+PEL+ +P   IH P              L   Y
Sbjct: 403 APYFRIFNPILQGEKFDPDGAYVARWVPELSKLPPALIHKPWEATPMELAAAGVTLGKTY 462

Query: 457 PLPIVDHKKACHHTLNQYYAAKK 479
           P PIVDHK A    L  Y   ++
Sbjct: 463 PEPIVDHKDARERALAAYRRTRR 485


>gi|312214969|emb|CBX94922.1| hypothetical protein [Leptosphaeria maculans]
          Length = 633

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 159/488 (32%), Positives = 239/488 (48%), Gaps = 48/488 (9%)

Query: 17  DLRITDNKALYAA---CHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQVQKS 71
           DLRI DN AL+ A      +   ++ V++  A  E W  HG SA +  F+Y  L  +QK 
Sbjct: 155 DLRIQDNTALHHASQLAQKNKQHLVCVYVNCAADESW--HGTSAARVDFMYEGLKLIQKE 212

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L    I   + +C N  D +  + S+  +Q V+ +F N +YEI+E+RRD  L K +   +
Sbjct: 213 LKDLNIPLVFLECENRKDIVSTVISWFKEQGVSHVFGNIEYEIDEIRRDIKLVKTIGDDI 272

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLPVPAIRLTGPV 188
                 D  ++ PG++L  + +  K++TP+ KA + ++V+     L + P PA+      
Sbjct: 273 QVSLHHDQTVVEPGTMLTGSGKPMKIFTPYFKAWL-DIVKDQPSLLDTNPPPAVNPAS-- 329

Query: 189 TPSNIPRFFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
              ++   FD P                + I   +P G   A   + KF K  +  Y   
Sbjct: 330 AKQDLESLFDTPAPRPAKDKQFENDEDKKRIRKFWPPGYTAASTRMDKFLKH-IPNYAAT 388

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQC------WNRLKEEFVDLLIKPKSGAFSWLNELIW 287
           R  P+   TS+LSPY S G+ S R        +NR   +F +      +G ++W+ E+++
Sbjct: 389 RSDPSKDSTSRLSPYFSAGMYSVRSALRKVTDYNRGSTDFRESAAS--AGVYAWVREIVF 446

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE YR      P   M  P       + W  +    QAW  G TG P +DA MRQL    
Sbjct: 447 RELYRQTTLCTPHTSMNLPQNLKFNSVRWEDNEDHWQAWINGQTGVPFVDAGMRQLAHEA 506

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNRLRM  +S+L  +LL+D+R GE YF   L+D DL +N  GW+          P + 
Sbjct: 507 WMHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLGNNTQGWE----------PSYT 556

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKA 466
           +FNPT Q ++ DP G FIR W+PEL NV  + + APH  L   +   L YP P VD ++ 
Sbjct: 557 VFNPTSQAEKNDPDGAFIRKWVPELRNVQGKAVFAPHERLSGTEFEQLGYPRPCVDWRQT 616

Query: 467 CHHTLNQY 474
               L+++
Sbjct: 617 KERCLSRF 624


>gi|194334030|ref|YP_002015890.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
           271]
 gi|194311848|gb|ACF46243.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
           271]
          Length = 477

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 166/491 (33%), Positives = 253/491 (51%), Gaps = 42/491 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67
           + W R DLR+ DN AL+ A    +  V+ V+I   ++P  W Q G + R   +++ SL+ 
Sbjct: 7   ICWFRQDLRLEDNPALFVAAE--EGYVLPVYILDDSSPGTW-QMGSATR--CWLHHSLVS 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +S   K  +F+        + +E L +   Q +  K+ +NR YE   ++RD+ ++  L
Sbjct: 62  LNRSFDGKLGIFR-------GEPLEILKTLARQHKAEKIVWNRCYEPWRMKRDQGIKATL 114

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNL-----VQADLRSLPVP 180
           Q   I   SF+ S+L  P  +L      Y+V+TPF R+  +  L     + A  R L   
Sbjct: 115 QAEGIEVSSFNGSLLWEPHEVLKQNNTPYRVFTPFFRRGCLNALPPRTPLPAPQRMLMAD 174

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            I  +  V   N+     +  Q I   + +GE +A   L +F  + +  Y E RD P   
Sbjct: 175 TIDNSISVQDLNLLPSIPWDSQLIS-HWSVGENSARQSLLRFLDQGLNGYKEGRDFPGQN 233

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF--- 297
             S+LSP L  G LSP   W   K                +L+EL WREF   L+     
Sbjct: 234 HVSRLSPALHFGELSPNTVWYEAKR------CGSGQDLDHFLSELGWREFAYTLLYHNHD 287

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P   +   F    +   W  +   L  W+QG TG+P++DA MR+L   G+MHNR+RMIT
Sbjct: 288 MPEKNLQSAF----DAFPWVHNDETLIRWQQGMTGYPLVDAGMRELWQTGYMHNRVRMIT 343

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFLVK+LL+ W  G+++F   LLD DLA+N+ GWQW A  G D+ PYFR+FNP  QG++
Sbjct: 344 GSFLVKNLLLHWHYGQQWFHDCLLDADLANNSAGWQWIAGCGVDAAPYFRVFNPVRQGEK 403

Query: 418 FDPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHHTL 471
           FDP GT+   ++PEL  +P +Y+     AP + L +  ++L   YP PIVD   + +  L
Sbjct: 404 FDPDGTYTLRFVPELAKLPKKYLFNPWEAPKNILQEAGITLGKTYPEPIVDLAISRNRAL 463

Query: 472 NQYYAAKKQSL 482
           + Y + +K+ +
Sbjct: 464 SAYASIRKKKI 474


>gi|325963959|ref|YP_004241865.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470046|gb|ADX73731.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 478

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 166/485 (34%), Positives = 237/485 (48%), Gaps = 38/485 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACH-NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
             +VWLR+DLR+ DN AL AA        V+ +     E  R  G ++R   +++ SL  
Sbjct: 7   TSIVWLRDDLRLDDNPALAAAVDLGLPLTVVYILDEDSEGVRPLGSASRW--WLHHSLAS 64

Query: 68  VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +  SL   G  ++ Q             L           LF+NR+Y + E   D  ++ 
Sbjct: 65  LASSLEASGSRLLLQRGPAEPI------LKDLAAATNAGHLFWNRRYGLPERTVDAAVKA 118

Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              ++ +   S+  ++L  P +I   A   YKV+TPF +A    L   D+R       +L
Sbjct: 119 WAGENGIEALSYQANLLFEPWTIRTGAGGPYKVFTPFWRAC---LASGDVRDPLSAPPQL 175

Query: 185 ---------TGPV-----TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                    +GP      T    P   D+    +   +  GE+ A   L  F +     Y
Sbjct: 176 PPPPAGKTGSGPAGDALETWRLFPSSPDWS-GGLAKTWEPGEEGARQRLEDFLEGSAQDY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              R+IP ++GTS+LSP+L  G +SP + W  ++  F    +    G F   +EL WREF
Sbjct: 235 GTGRNIPGVEGTSRLSPHLRFGEVSPFRVWREIRGRFP-REVPADVGIFR--SELGWREF 291

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
             HL+   P +   + F P  ++ EW K     L AW+QG TG+P +DA MRQL   GWM
Sbjct: 292 CWHLLYTNPDLAT-RNFRPEFDRFEWEKPGKDELAAWQQGRTGYPFVDAGMRQLWQTGWM 350

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM  ASFLVK+LL DWR GE +F   L+D D ASN   WQW A +G D+ PY+RIF
Sbjct: 351 HNRVRMAAASFLVKNLLADWRTGEAWFWDTLVDADAASNPANWQWVAGSGADASPYYRIF 410

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
           NP  Q K+FD  G ++R ++PEL  +  + IH P  W   + L   YP P+VD   +   
Sbjct: 411 NPVTQSKKFDAAGNYLRQYIPELAGLEAKAIHEP--WKAADGLH-GYPRPLVDLPGSRER 467

Query: 470 TLNQY 474
            L  Y
Sbjct: 468 ALAAY 472


>gi|78778672|ref|YP_396784.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712171|gb|ABB49348.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
           str. MIT 9312]
          Length = 478

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 170/473 (35%), Positives = 242/473 (51%), Gaps = 35/473 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69
           L W R DLRI DN+AL  A   S+A + + +I   ++   H  SA  ++ F+  SL ++ 
Sbjct: 7   LFWHRKDLRIFDNQALIKAFSLSNA-ITSTYIL--DRNYTHDFSANSRAWFLGDSLQELG 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +  + G      +     D +  +           + +N+  E  E+ RD  ++K L+ 
Sbjct: 64  NNWEKMGSRLVIEE----GDPVLIIPQLAKTIDAKFVIWNKTIEPYEINRDLQIKKNLKE 119

Query: 130 RVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------------- 174
           + I   +S+D  +L+ P  I +   + Y VY PF K L   +    L             
Sbjct: 120 KNIQVIESWD-HLLVEPLKIFSGNNKPYSVYGPFYKNLKSKMNLLGLYDQDKVIFQFKDI 178

Query: 175 -RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVE 232
              L    +  +   T     +   +    I P  P GE  A  +L KF  EK +Y Y  
Sbjct: 179 DNKLKENKLINSSDSTLKKFLKNIKFSGSNICPCRP-GENGAEILLEKFINEKNIYSYNS 237

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFY 291
            RD+P+  GTS LS  L  G +S R+ WN   +   D      S +  +W  EL+WREFY
Sbjct: 238 ARDLPSHNGTSFLSASLRFGTISIRKVWNATLDLNSDFESHENSLSIETWQKELVWREFY 297

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H +  +P +  G     W +   W  ++   Q W  G TG PI+DAAMRQLN+ GWMHN
Sbjct: 298 QHCLFHFPELEKGPYRKKWGQ-FPWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHN 356

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFLVKDL+  W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP
Sbjct: 357 RCRMIVASFLVKDLICSWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNP 415

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKNDLSLNYPLPIVDH 463
             Q K+FDP   +I+ W+PEL+ V  +  ++   S L+KN    NY  PIVDH
Sbjct: 416 YTQAKKFDPICEYIKSWIPELSKVSNSDLLNGEISNLEKN----NYSTPIVDH 464


>gi|115352268|ref|YP_774107.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria AMMD]
 gi|115282256|gb|ABI87773.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia ambifaria
           AMMD]
          Length = 525

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 157/492 (31%), Positives = 247/492 (50%), Gaps = 29/492 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A ++++  +VW R+DLR+TD  AL  A   S   ++ V++          +      +
Sbjct: 26  VSAKSSVAPAVVWFRDDLRVTDQPALTRAV-ASGRPLVCVYVDDTGDGAGRALGGAARWW 84

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ +L  +  +L++ G     H      D+   ++          +++NR+Y   +   D
Sbjct: 85  LHGALAALDAALARHG----GHLLLLRGDAQREIERIVHDTGAAAVYWNRRYAQPQRDAD 140

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L+  L+ R +  +S + S+L  P  ++  A   ++V+T + +A+ ++  +  +  LP 
Sbjct: 141 AALKASLKARGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRD--RTVMAPLPE 198

Query: 180 PAIRLTGPVTPSNI-------------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
           P  R+     P+ +             P   D+     D      E  A   L  F    
Sbjct: 199 PE-RIAFHPWPAAVRERALALDALALRPHAPDWAGGLRDEWPAPDEAGAHARLDAFVHAS 257

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           +  Y + RD P    TS+LSP+L  G +SPRQ W+ ++           +GA  +L+EL 
Sbjct: 258 LAGYADTRDRPGEPATSRLSPFLRFGNVSPRQVWHAVQGATQAGGAACAAGAEKFLSELG 317

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF   L+  +P++     F    + + W  D   L+AW++G TG+P++DA MR+L T 
Sbjct: 318 WREFSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTT 376

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYF
Sbjct: 377 GWMHNRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYF 436

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460
           RIFNP  QG++FDPQG ++R W+PEL  +    IHAP              L L+YP PI
Sbjct: 437 RIFNPVTQGRKFDPQGEYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPI 496

Query: 461 VDHKKACHHTLN 472
           VDH  A    L+
Sbjct: 497 VDHDGARRRALD 508


>gi|328675930|gb|AEB28605.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
          Length = 464

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 163/486 (33%), Positives = 249/486 (51%), Gaps = 50/486 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  V + W R DLR+ DN ALY A    +   I +FI    Q     I      +++ SL
Sbjct: 2   SKKVAIHWFRQDLRLADNPALYHASQADE--TITIFILDENQ----DIGGASKLWLHHSL 55

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + +SL+ K   +         + +E +     + +VT  ++NR Y+   + RD  +++
Sbjct: 56  NNLNRSLNDKLNFYN-------GNPLEIIKKLIKENKVTDFYWNRCYDKYSINRDTQIKQ 108

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLP 178
            LQ + I   SF+ S+L+ P          YKVYTPF K LI+      N+ +A    L 
Sbjct: 109 FLQEQSINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYQPNIKKAVFSRL- 167

Query: 179 VPAIRLTGPVTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
              I+L    T  ++    P+     +Q I   + +GE+ A  +L +F   K+  Y   R
Sbjct: 168 ---IKLASSDTLDSLKLLEPKL---TWQNIIKQWQVGEKAAAQLLEQFLTTKIKDYKIAR 221

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D  +   TS LSPYL  G +SP Q +N ++      L    +    ++ EL+WR+F  + 
Sbjct: 222 DYMSTDATSTLSPYLHFGEISPNQIFNAVQS-----LDSIGNNEEHFIKELVWRDFSYYQ 276

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           + +YP +   K      +   W+ ++ LL+ W++G TG PI+DA MRQL   G+MHNR+R
Sbjct: 277 IYYYPEL-HNKNINQKFDNFAWDNNATLLKKWQKGQTGIPIVDAGMRQLWQTGYMHNRVR 335

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q
Sbjct: 336 MIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQ 395

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---------NYPLPIVDHKK 465
            ++F+    +IR ++PEL  +P + I  P  W + ++L L         NYP PIVD K 
Sbjct: 396 AEKFEAY-EYIRKYVPELKLLPNKLIAKP--W-EASELVLQEAGIILGQNYPRPIVDLKN 451

Query: 466 ACHHTL 471
           +    L
Sbjct: 452 SRDKAL 457


>gi|241761599|ref|ZP_04759686.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373907|gb|EER63440.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 467

 Score =  246 bits (627), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 162/481 (33%), Positives = 249/481 (51%), Gaps = 42/481 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R+D R+ DN A+ AA  + +  VI  +I      +    +     ++  SLL + +
Sbjct: 8   LIWFRHDFRLRDNAAVTAAIQSRNP-VICFYIQESADAKTESAA---DWWVAESLLALNR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            L +KG      Q   F+   E +    +QQ    KLF+NR+Y+      D++L+K ++ 
Sbjct: 64  QLKEKG-----GQLHLFEGDAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRA 118

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187
             +  +SF +++L  P ++ N   Q +++++ + +A+ + + +QA    LP P   +   
Sbjct: 119 MGLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRYMNIQA---VLPCPENWV--- 172

Query: 188 VTPSNIPRFFDYPFQAI------DPMFPI--------GEQNALHILRKFCKEKVYYYVEQ 233
            +   I     Y   AI      D  + I        GE  A   L+ F +  + +Y ++
Sbjct: 173 FSTREIRHCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKE 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA  GTS LS +L  G +S +Q W+ + +           G   +L EL WREF   
Sbjct: 233 RDFPAKDGTSLLSAFLRSGQISSKQIWHEVTKN------GSGEGTSKFLAELGWREFAWS 286

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P +       P  +K+ W K S  LQ WK+G TG+P IDA MR L   G+M NRL
Sbjct: 287 VLWEHPDLNQHN-LRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRL 345

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+TASFLVK LL+DWR GE++F   L+D D A N   WQW A +G +S PYFRI NP +
Sbjct: 346 RMVTASFLVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPIL 405

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q ++FDP G +IR W+ EL +V T +IH P      +    NYPLPI+ H++     L  
Sbjct: 406 QSQKFDPDGQYIREWVKELADVSTAFIHTP---WKADKQPANYPLPIIAHEEGRDRALRA 462

Query: 474 Y 474
           +
Sbjct: 463 W 463


>gi|170733532|ref|YP_001765479.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
 gi|169816774|gb|ACA91357.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
          Length = 519

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 155/485 (31%), Positives = 243/485 (50%), Gaps = 33/485 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A  +++  +VW R+DLR+TD  AL  A   S   ++ VF+          +      +
Sbjct: 28  VSAKPSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGAGAGPALGGAARWW 86

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D
Sbjct: 87  LHGSLAGLDAALARHGGRLLLLRG----DAQREIERVVGDTGAAAVYWNRRYAQQQRDAD 142

Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L+  L+ R V  +S + S+L  P  +L  +   Y+V+T + +A  ++   A    LP 
Sbjct: 143 AALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVA--APLPA 200

Query: 180 PAIRLTGPVTPSNI-------------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
           P  R+     P  +             P   D+     D      E  AL  L +F    
Sbjct: 201 PE-RIAFHPWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDRFLTTS 259

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           +  Y + RD P    TS+LSP+L  G +SPRQ W+ ++           + A  +L+EL 
Sbjct: 260 LAGYADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAAYAAHADKFLSELG 319

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF   L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T 
Sbjct: 320 WREFSYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTT 378

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYF
Sbjct: 379 GWMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYF 438

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND--LSLNYPL 458
           RIFNP  QG++FDP G ++R W+PEL  +    IHAP  W      L+     L ++YP 
Sbjct: 439 RIFNPVAQGQKFDPGGAYVRRWVPELAGLDDASIHAP--WEASPLALEAAGVRLGVDYPA 496

Query: 459 PIVDH 463
           P+V+H
Sbjct: 497 PLVEH 501


>gi|316933592|ref|YP_004108574.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
           DX-1]
 gi|315601306|gb|ADU43841.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
           DX-1]
          Length = 483

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 166/493 (33%), Positives = 236/493 (47%), Gaps = 35/493 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQS 58
           M  T      +VW R+DLR+ D+ AL+AA   S A V+ V++     ++ R  G +AR  
Sbjct: 1   MLTTAGSRPVIVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDEVRALGGAARW- 58

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            ++  SL  ++  L   G +    +      +   L     Q     + +N + EI   R
Sbjct: 59  -WLAQSLRSLEAELRAAGALLILRRGP----AAAVLAELAQQSDAAAVHWN-EIEIAPHR 112

Query: 119 RDKLLEKR--LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
                         +         L+ P +I +   +  +V+TPF + ++   +    + 
Sbjct: 113 AVADALADALTMAGIAYHRHSGDTLVAPSAIRSKDGRGMRVFTPFWRRVLS--LGDPPQP 170

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVY 228
           LP PA     P  P    +  D+  +   P         +  GE  A   L  F   ++ 
Sbjct: 171 LPRPAALRPAPALPGA--QLSDWQLEPTAPDWAGGLRATWRPGEAAAKTRLADFLA-RLP 227

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIW 287
            Y E RD P    TS LSPYL  G +SPRQ W   +    +   I P    F  L+EL W
Sbjct: 228 GYAEGRDYPDRHVTSGLSPYLRFGEISPRQVWYAARFAAAERPAIAPDIDKF--LSELGW 285

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF RHL+A +P +   +   P  +   W  D   L AW++G TG+PI+DA M +L   G
Sbjct: 286 REFCRHLLADHPDLA-ARNLQPAFDAFPWQSDDGALTAWQRGRTGYPIVDAGMHELWHSG 344

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
            MHNR+RM+  SFLVK LL+DWR+GE++F   L+D D  SN G WQW A  G D+ PYFR
Sbjct: 345 VMHNRVRMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFR 404

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461
           +FNP +Q ++FD  G +IR WLPEL  +P   IH P +           +L  NYP PIV
Sbjct: 405 VFNPVLQSEKFDADGAYIRRWLPELAGLPNNLIHQPWTATPLELAAAGVELGGNYPRPIV 464

Query: 462 DHKKACHHTLNQY 474
           DHK A    L+ Y
Sbjct: 465 DHKAARQRALSAY 477


>gi|126439700|ref|YP_001059701.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668]
 gi|126219193|gb|ABN82699.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668]
          Length = 486

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 164/504 (32%), Positives = 253/504 (50%), Gaps = 44/504 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSH 59
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       R  G +AR   
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFDERAGGRPLGGAARW-- 57

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           +++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     
Sbjct: 58  WLHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAV 113

Query: 120 DKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++       R +P
Sbjct: 114 DNAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVP 166

Query: 179 VPAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKF 222
            P +    RL G   P+ + R         ++P  P            GE  A   LR F
Sbjct: 167 APPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAF 226

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
              ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L
Sbjct: 227 VDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFL 285

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           +EL WREF   L+  +P +   +      + + W  D   L AW++G TG+P +DA MR+
Sbjct: 286 SELGWREFGWTLLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRE 344

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+
Sbjct: 345 LWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADA 404

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSL 454
            PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W             L  
Sbjct: 405 APYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGE 462

Query: 455 NYPLPIVDHKKACHHTLNQYYAAK 478
            YPLPIV H  A    L+ + A +
Sbjct: 463 TYPLPIVAHDAARRRALDAFGAIR 486


>gi|312889452|ref|ZP_07749004.1| Deoxyribodipyrimidine photo-lyase [Mucilaginibacter paludis DSM
           18603]
 gi|311298004|gb|EFQ75121.1| Deoxyribodipyrimidine photo-lyase [Mucilaginibacter paludis DSM
           18603]
          Length = 437

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 240/484 (49%), Gaps = 60/484 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH---FIYAS 64
           +V + W R DLR+ DN  LY A       V+ +FI   E   Q  +  R+     FIY +
Sbjct: 4   TVSIFWFRRDLRLDDNAGLYYALKGGHP-VLPLFIFDTEILNQ--LEDREDARVTFIYQT 60

Query: 65  LLQVQKSLSQK---GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120
           +  +   L ++    I+ +Y+      + +        +  +  ++ N  YE     RD 
Sbjct: 61  IEALNNELREQQSSSILIKYNSTGQAWNEV------LAEYDIAAVYTNHDYEPYARHRDA 114

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           +L E   Q  +   ++ D V+   G ++    + Y V+TP+++     L    L+  P P
Sbjct: 115 ELKELFTQKNIEFYTYKDQVIFEKGEVVKDDQKPYTVFTPYKRKWYDKLKPFYLK--PYP 172

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAI 239
             +    ++ ++       PFQ +  +  +G  ++  H   K  K  +  Y EQRD PAI
Sbjct: 173 TRKYLDNISKTS-------PFQ-LPTLKSMGFAESKTHFPDKQYKTIIAGYHEQRDFPAI 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLMAF 297
           +GTS +  +L  G +S RQ            L     GA   +WLNELIWREFY  ++  
Sbjct: 225 KGTSHIGLHLRFGTVSIRQ------------LATDAYGAEEKTWLNELIWREFYMMILYH 272

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P       F P  ++I W  +    +AW +G TG+P++DA MR+LN  G+MHNR+RM+ 
Sbjct: 273 FPQTA-DHAFKPEYDRIRWRNNETEFKAWCEGKTGYPLVDAGMRELNATGYMHNRVRMVV 331

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DWR GE YF  +LLD ++ASN GGWQWAA +G D+ PYFR+FNP +Q K+
Sbjct: 332 ASFLSKHLLIDWRWGERYFARKLLDYEMASNVGGWQWAAGSGTDAAPYFRVFNPELQLKK 391

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP+  +++ W+PE  +                     YP PIVDH  A    L  +  A
Sbjct: 392 FDPKLQYVKKWVPEYADFS------------------KYPEPIVDHAFARERCLKVFKEA 433

Query: 478 KKQS 481
             +S
Sbjct: 434 LSKS 437


>gi|157412647|ref|YP_001483513.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
 gi|157387222|gb|ABV49927.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
          Length = 478

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 170/478 (35%), Positives = 248/478 (51%), Gaps = 45/478 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN+AL  A   S+A + + +I   E +     +  ++ F+  SL ++  
Sbjct: 7   LFWYRKDLRIFDNQALNKAISLSNA-ITSTYIFD-ENYSHDFNANSRAWFLANSLQELGN 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL------FYNRQYEINEVRRDKLLE 124
           + ++ G              IE  D   +  ++ KL      F+N+  E  E+ RD  ++
Sbjct: 65  NWNKMGSRL----------VIEKGDPILIIPQLAKLIDAKFVFWNKSIEPYEINRDLKIK 114

Query: 125 KRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------------- 169
           K L+ + I   +S+D  +L+ P  I +   + Y VY PF K L   +             
Sbjct: 115 KNLKEKNIQFIESWD-HLLVEPSKIFSGNNKPYSVYGPFYKNLKSKMKFLGSYNQYKVIF 173

Query: 170 -VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-V 227
             +     L    I  +     +   +   +P   I P  P GE  A  +L+ F  EK +
Sbjct: 174 QFKDIDNKLKENKIINSSDSVLNKFLKNIKFPGSNICPCRP-GEVAAESLLKNFINEKKI 232

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELI 286
           Y Y   RD+P+  GTS LS  L  G +S R+ WN       D      S +  +W  EL+
Sbjct: 233 YSYNSVRDLPSHIGTSFLSASLRFGTISIRKVWNATLNLNSDFESHENSLSIETWQKELV 292

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREFY+H +  +P +  G P+    ++  W  ++   Q W +G TG PI+DAAMRQLN+ 
Sbjct: 293 WREFYQHCLFHFPELEKG-PYRKKWDQFPWLNNNEWFQHWSKGETGVPIVDAAMRQLNST 351

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR RMI ASFLVKDL+ +W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  
Sbjct: 352 GWMHNRCRMIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-L 410

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           RIFNP  Q K+FDP   +I+ W+PEL+ V  +  ++   S L+ N    NY  PIV+H
Sbjct: 411 RIFNPYTQAKKFDPICEYIKSWIPELSKVSNSDILNGEISNLENN----NYSKPIVNH 464


>gi|296536181|ref|ZP_06898305.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
           49957]
 gi|296263491|gb|EFH09992.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
           49957]
          Length = 477

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 162/476 (34%), Positives = 232/476 (48%), Gaps = 42/476 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+WLR DLR  D+ AL+A        V+ VF+         G +AR   +++ SL    K
Sbjct: 9   LLWLRQDLRTADHPALHAVAGQP---VLPVFVLDESDPWAPGGAARW--WLHHSL----K 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL--Q 128
           +L +K              + + +          ++  +R YE    +RD  + K L  Q
Sbjct: 60  ALGEKLAALGAPLLLLRGKAADLIPELADALGAAEVHASRLYEPWARQRDAGIAKALEGQ 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            R +C     + LL P  +     + Y VYTPF +A+   L   D         RL    
Sbjct: 120 GRRLCL-HSGATLLEPHRLRTGQGKPYSVYTPFARAV---LALGDPPPPIPAPDRLRAAP 175

Query: 189 TPSN---------IPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            P           +PR  +  + A  P +   GE  A   LR F  +    Y   RD+P 
Sbjct: 176 PPREGLALDALDLLPRPPEPDWAAAFPEYWTPGEDGAAARLRDFAAQAAQGYDRGRDLPG 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              T++LSP+L  G +SPRQ W  + E           G  +WL E++WREF  H +   
Sbjct: 236 EDRTARLSPHLHWGEVSPRQAWQAVAEGGK------SGGHITWLKEILWREFAYHTLWHR 289

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +    P  P   +  W  D  LLQAW++G TG+PI+DA +RQL   GWMHNR+RM+  
Sbjct: 290 PELP-DTPLRPEFAEFPWQPDDTLLQAWQRGRTGYPIVDAGLRQLWRHGWMHNRVRMVVG 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LVK LL  W+ G  +F   L+D DLA+N+  WQW A +G D+ PYFRIFNP +QG++F
Sbjct: 349 SLLVKHLLQPWQQGSLWFWDTLVDADLAANSMNWQWVAGSGIDASPYFRIFNPILQGEKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKA 466
           DP+G ++RH++PEL  +P  ++H P  W    +        L  +YP PIVDH+  
Sbjct: 409 DPEGRYVRHFVPELARLPDAWLHKP--WQASPEMLRAAGLRLGHDYPAPIVDHEGG 462


>gi|296271918|ref|YP_003654549.1| deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM
           7299]
 gi|296096093|gb|ADG92043.1| Deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM
           7299]
          Length = 443

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 170/487 (34%), Positives = 244/487 (50%), Gaps = 68/487 (13%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R DLRI DNK L  A +    +V+ +FI       +     ++  FIY ++L ++
Sbjct: 3   QILWFRRDLRIIDNKILEKASN----EVLPIFIFDKNILEKLDFDDKRVTFIYDAVLALK 58

Query: 70  KSLSQKGI-----------VFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINE 116
           KSL + G+           VF   +   FD+ +     DSY ++         R  +INE
Sbjct: 59  KSLQELGLDLYIFFDTPKNVFTKLKNEGFDEVLCSCDFDSYSIK---------RDKQINE 109

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-- 174
           +             +  K + DS L+ P   L      YKV+TPF K+L   L  +D   
Sbjct: 110 I-------------LPLKRYLDSFLINPNKNLKKDGTPYKVFTPFYKSLSW-LTSSDKIG 155

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID-PMF-PIGEQNALHILRKFCKEKVYYYVE 232
            ++  P ++L+     +  P   +  F+ +  P F     QN L       KEKV  Y +
Sbjct: 156 EAMINPNLKLSK--YENKTPTLDELGFERVTLPEFLKKSPQNRLDDF----KEKVKEYEK 209

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RDI    GTS L   L  G LSPR  +N +K+         K  + +++ +L WREFY 
Sbjct: 210 NRDIFYKDGTSNLGVDLRFGTLSPRMIFNEIKKS-------DKENSEAFIRQLFWREFYN 262

Query: 293 HLMAFYPSVCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +++  +P+         W   +I W++D    Q W +G TG PIIDAAMR  N  G MHN
Sbjct: 263 YILFHFPNSENEN----WNGIEISWSEDEEDFQKWCEGKTGVPIIDAAMRHFNKTGMMHN 318

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRMI +SFL K+LL+DW+ GE+YF  +LLD + +SN G WQWAASTG DSVPYFRIFNP
Sbjct: 319 RLRMIVSSFLCKNLLIDWKKGEQYFAKKLLDYEASSNIGSWQWAASTGADSVPYFRIFNP 378

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
            +Q  +FD +  FI+  +PEL +V  + IH   +  DK      Y   IVD K +    +
Sbjct: 379 YLQSAKFDKEAIFIKSVMPELKDVDAKLIHIEGALKDK------YVNSIVDIKYSRDRAM 432

Query: 472 NQYYAAK 478
             +  AK
Sbjct: 433 RIFKEAK 439


>gi|217421243|ref|ZP_03452748.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576]
 gi|217396655|gb|EEC36672.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576]
          Length = 486

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 161/503 (32%), Positives = 250/503 (49%), Gaps = 42/503 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     D
Sbjct: 59  LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  R I  ++F+ S+L  PG ++N   + Y+V++ + +A ++       R +P 
Sbjct: 115 NAVQTALDARGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 167

Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223
           P +    RL G   P+ + R         ++P  P            GE  A   LR F 
Sbjct: 168 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 227

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+
Sbjct: 228 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 286

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL WREF    +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L
Sbjct: 287 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 345

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ 
Sbjct: 346 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 405

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455
           PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W             L   
Sbjct: 406 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 463

Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478
           YPLPIV H  A    L+ + A +
Sbjct: 464 YPLPIVAHDAARRRALDAFGAIR 486


>gi|319949517|ref|ZP_08023567.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4]
 gi|319436807|gb|EFV91877.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4]
          Length = 466

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 169/512 (33%), Positives = 241/512 (47%), Gaps = 84/512 (16%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M + ++W R DLR++D+ AL AA    D +V+ VF+  P    + G  A +   + AS+ 
Sbjct: 1   MGISILWFRRDLRLSDHPALLAAVEAGD-EVLPVFVRDPALLSRAGARADR---MAASIA 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   +    +V          D    +          ++  +R+      RRD  +   
Sbjct: 57  ALSGDIGGALVV-------RTGDPARVIPGLAALTGAREVHVSRESTPYGRRRDGRVRAA 109

Query: 127 LQ--HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+   R + ++      + PG +LN + + Y+V+TPF +A                  R 
Sbjct: 110 LEADGRRLVET-GSPYAVGPGRVLNGSGRPYQVFTPFSRAW-----------------RE 151

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGE---------------------------QNALH 217
            G   P   PR  D P+ A+    P GE                             AL 
Sbjct: 152 HGWPEPGRRPR--DDPWAAM----PAGELPGDDGDGWGRDTAGGAVRGAAGDAGEAAALA 205

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS- 276
             R F ++ + +Y +QRD P +  TS+LS  L  G + PR           DL   P + 
Sbjct: 206 RWRAFLEDDLEHYGQQRDRPDLDTTSRLSAPLKYGEIHPRTI-------LADLAAHPAAD 258

Query: 277 --GAFSWLNELIWREFYRHLMAFYPSVCM-----GKPFIPWTEKIEWNKDSHLLQAWKQG 329
             GA  ++ EL WREFY  ++   P             +P+    E N    L++AW++G
Sbjct: 259 GEGARRFVTELAWREFYADVLWHQPRSAWRDLRDALSGMPYDRGPEVND---LVEAWRRG 315

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TGFP +DA MRQL   GWMHNR+RM+TASFLVKDL V W +G  +F+  LLDGDLASNN
Sbjct: 316 RTGFPFVDAGMRQLVAQGWMHNRVRMVTASFLVKDLHVWWPVGARHFLDHLLDGDLASNN 375

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
            GWQW A TG D+ P+FR+FNP  QG+RFDP G +IR W+PEL ++P    H P  W D 
Sbjct: 376 HGWQWVAGTGTDASPFFRVFNPVTQGQRFDPDGDYIRRWVPELRHLPGAAAHEPWLWPDG 435

Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +D    YP  IVDH +     L +Y   +  S
Sbjct: 436 HD--HGYPERIVDHAEERLEALRRYDVVRNGS 465


>gi|78066957|ref|YP_369726.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383]
 gi|77967702|gb|ABB09082.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383]
          Length = 518

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 156/485 (32%), Positives = 243/485 (50%), Gaps = 33/485 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A ++++  +VW R+DLR+TD  AL  A   S   ++ VF+          +      +
Sbjct: 27  VPAKSSVAPAIVWFRDDLRVTDQPALTRAV-ESGRPLVCVFVDDTGDGAGRALGGAARWW 85

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D
Sbjct: 86  LHGSLAGLDAALARHGGRLLLLRG----DAQREIERVVHDTGAEAVYWNRRYAQPQRDAD 141

Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L+  L+ R V  +S + S+L  P  +L  +   Y+V+T + +A  ++   A    LP 
Sbjct: 142 AALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVA--VPLPE 199

Query: 180 PAIRLTGPVTPSNI-------------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
           P  R+     P  +             P   D+     D      E  A   L  F    
Sbjct: 200 PE-RIAFHPWPKAVRDCALALDVLALRPPVPDWAGGLRDAWPAPDEAGAHARLDAFLTAS 258

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           +  Y + RD+P    TS+LSP+L  G LSPRQ W+ ++           + A  +L+EL 
Sbjct: 259 LAGYADARDLPDRPATSRLSPFLRFGNLSPRQVWHAVQGAANAGGAAVAADADKFLSELG 318

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF   L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T 
Sbjct: 319 WREFSYTLLYHFPALASDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTT 377

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYF
Sbjct: 378 GWMHNRVRMVVASFLIKHLLIDWRAGEAWFWDTLVDADPANNAASWQWVAGCGADAAPYF 437

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND--LSLNYPL 458
           RIFNP  QG++FDP G ++R W+PEL  +    IHAP  W      LD     L ++YP 
Sbjct: 438 RIFNPVAQGQKFDPDGAYVRRWVPELAGLDNASIHAP--WEASPLELDAAGVRLGVDYPA 495

Query: 459 PIVDH 463
           P+V+H
Sbjct: 496 PLVEH 500


>gi|330927872|ref|XP_003302036.1| hypothetical protein PTT_13712 [Pyrenophora teres f. teres 0-1]
 gi|311322808|gb|EFQ89849.1| hypothetical protein PTT_13712 [Pyrenophora teres f. teres 0-1]
          Length = 534

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 153/490 (31%), Positives = 241/490 (49%), Gaps = 52/490 (10%)

Query: 17  DLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
           DLRI DN AL+ A     ++   ++ +++  P     HG S  +  F+   L  +QK L 
Sbjct: 56  DLRIQDNTALHHASELAQSARKPLVCIYVDCPADESWHGTSPARVDFMCEGLKIMQKELK 115

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133
              I   + QC N    +E    +  +Q+V+ +F N +YEI+E+RRD  L K +  ++  
Sbjct: 116 DLNIPLVFLQCENRKKIVETAVEWLKKQQVSHVFGNYEYEIDEMRRDFKLVKTVGDKIQV 175

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP---VTP 190
             + D  ++ PG++L       KV+TP+ KA +     A LRS   P +  T P     P
Sbjct: 176 SLYHDQTVVEPGTMLTGTGTPMKVFTPYHKAWL-----AKLRS--EPELLDTNPPPAANP 228

Query: 191 SNIPRFFDYPFQAIDP-------------------MFPIGEQNALHILRKFCKEKVYYYV 231
           S++ +     F  + P                   ++P G   A   +  F K+ + +Y 
Sbjct: 229 SSMKKDLKDLFDTLAPKPASDKQFTSEEEKKRIRKLWPAGHSAASARMDTFLKQ-ISHYA 287

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQC------WNRLKEEFVDLLIKPKSGAFSWLNEL 285
             R  PA   TS++S Y S G++S R        +NR   +F +   K  +G + W+ E+
Sbjct: 288 ATRSNPAANSTSRMSAYFSAGMISMRSTLQKVVDYNRGSTDFTE--AKASTGVYGWVREI 345

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           ++RE YR      P   M  P     + ++W  D    + W +G TG P IDA MRQLN 
Sbjct: 346 VFRELYRQTTMTTPHTSMNLPQNLKFDAVQWEDDEEGWEKWYKGQTGEPFIDAGMRQLNA 405

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
             +MHNRLRM  +S+L  +LL+D+R GE YF   L+D DL++N  GW+          P 
Sbjct: 406 EAYMHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PS 455

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHK 464
           + +FNP  Q ++ DP G +IR W+PEL +V  + + AP++ L K +   L YP P VD K
Sbjct: 456 YTVFNPVSQAEKNDPDGEYIRKWVPELRHVEGKAVFAPYARLSKKEFEKLGYPKPHVDWK 515

Query: 465 KACHHTLNQY 474
           +     ++++
Sbjct: 516 ETKARAIDRF 525


>gi|257388583|ref|YP_003178356.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
           12286]
 gi|257170890|gb|ACV48649.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
           12286]
          Length = 466

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 164/494 (33%), Positives = 248/494 (50%), Gaps = 47/494 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M +H  W R DLR TDN  L AA   +D+ V+ VF+   +    H    R + F+  +L 
Sbjct: 1   MRIH--WHRRDLRTTDNAGLAAAT--ADSPVVPVFVFD-DAVLDHAAPPRVA-FMLDALD 54

Query: 67  QVQKSLSQKG--IVFQYHQCSN---------FDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++     +G  +V  +   +            D + W ++Y      + L   R   + 
Sbjct: 55  SLRAQYRDRGSDLVIAHGDPTAEIPRLAEAFGADGVTWGEAY------SGLGIERDIAVR 108

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           +   D  +E+        ++  DSV   PG I  +    Y V+T F +    +  + D  
Sbjct: 109 QALDDVGVER--------EAVTDSVHHRPGEITTNDGDPYSVFTYFGRKW-HDREKEDPY 159

Query: 176 SLPVPA--IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
             P P     ++G   PS     F+ P QA  P  P G + A  +L  FC++ +Y Y ++
Sbjct: 160 DAPGPDELADVSGDPLPSVGDLGFEEP-QAEIP--PAGTEPARELLDAFCEDDIYRYEDR 216

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYR 292
           RD PA   TS+LS +L  G +  R+ + R          + +  + + + ++L WREFY 
Sbjct: 217 RDYPADDCTSRLSAHLKFGTIGIREVYERTASAAAAADDEERRESVAEFQSQLAWREFYT 276

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            ++    SV     +  +   ++W  D   LQAWK G TG+PI+DA MRQL    ++HNR
Sbjct: 277 QVLFANRSVVTDN-YKTYERPLQWRDDPEALQAWKDGETGYPIVDAGMRQLRQEAFVHNR 335

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI ASFL KDLL+DWR G E+F  +L+D D A++NGGWQWAASTG D+ PYFRIFNP 
Sbjct: 336 VRMIVASFLTKDLLIDWRAGYEWFKERLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPM 395

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-----KNDLSLNYPLPIVDHKKAC 467
            QG+R+DP   +I+ ++PEL +     I   H W D     + + +  YP PIVDH +  
Sbjct: 396 TQGERYDPDAEYIKTYVPELRDAEPSVI---HEWPDLSLTQRRNAAPEYPDPIVDHSERR 452

Query: 468 HHTLNQYYAAKKQS 481
              L  +  A+ +S
Sbjct: 453 DQALEMFETARGES 466


>gi|221197023|ref|ZP_03570070.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD2M]
 gi|221203696|ref|ZP_03576714.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD2]
 gi|221175862|gb|EEE08291.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD2]
 gi|221183577|gb|EEE15977.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD2M]
          Length = 476

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 159/472 (33%), Positives = 238/472 (50%), Gaps = 34/472 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V  R DLR++D+ AL AAC   DA V+ V++ TP++       A    +++ SL 
Sbjct: 1   MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHTPDEDAIWSPGAASRWWLHHSLT 59

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            + ++L Q+G   +V Q             + + C+       ++ R+YE   +  D  L
Sbjct: 60  SLDRALRQQGGRLLVMQNDPTIAVPALARAVGAQCV-------YWTRRYEPAAIACDAAL 112

Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +  L+ + V  +S+  ++   P  +   + Q Y+V+TPF + L  +L        P+PA 
Sbjct: 113 KSALRAQGVAAQSYPGTLWQEPWKVATDSGQPYRVFTPFWRKLRTSLSDCH----PLPAA 168

Query: 183 RLTGPVTPSN---------IPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
           R    +T  +         +PR  +D     +   +  GE  A   L +F  E +  Y +
Sbjct: 169 RPRRWMTTDDSTAVEAIGLLPRVRWD---AGLAEAWRPGEAGAWERLAEFVDEALAEYGD 225

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD PA  GTS+LS +L  G ++P Q    L+E       + +     +L EL WREF  
Sbjct: 226 ARDAPARMGTSRLSAHLHYGEITPTQILRTLQERASRTTDRDRPDLEPFLRELGWREFAH 285

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           HL+  +P       F    +   W  D +  L  W+QG TG P++DA MRQL   GWMHN
Sbjct: 286 HLLYHFPHTTDAN-FDARFDTFAWAPDDNDDLARWQQGRTGIPLVDAGMRQLWQTGWMHN 344

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM+ ASFL K+L   WR G  +F   L+D DLA+N  GWQW A  G D+ PYFR+FNP
Sbjct: 345 RVRMVVASFLTKNLRRHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNP 404

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVD 462
            +Q  +FDP   +++ WLPEL+ +P   +H P  W     LS   YP  +VD
Sbjct: 405 YLQAAKFDPDAAYLKRWLPELSALPANVLHQP--WKHPAALSACGYPASMVD 454


>gi|169236101|ref|YP_001689301.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
 gi|47117035|sp|Q9HQ46|PHR_HALSA RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|148793|gb|AAA72749.1| photolyase (EC 4.1.99.3) [Halobacterium salinarum]
 gi|167727167|emb|CAP13953.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
          Length = 481

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 162/486 (33%), Positives = 233/486 (47%), Gaps = 24/486 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAAC-------HNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           + L W R DLR TDN+ L AA           D   +A      ++   H    R +  +
Sbjct: 1   MQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLAHAAPPRVAFML 60

Query: 62  --YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
              A+L +  + L    IV          D    L +       T++ +N  Y      R
Sbjct: 61  DALAALRERYRDLGSDLIV-------RHGDPAAVLPAVANDLDATRVVWNHDYSGLATDR 113

Query: 120 DKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSL 177
           D  +   L    +  + F D+V   PG I  +A   Y VYT F RK   +          
Sbjct: 114 DAGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKNPPAPEPE 173

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKE-KVYYYVEQRD 235
           P      T     S +P   +  F   +   P  G   A  +L  F +   +Y Y ++RD
Sbjct: 174 PADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDIYRYEDRRD 233

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHL 294
            P  + TS+LSP+L  G +  R  +   +    D      +    +++ +L WREFY  +
Sbjct: 234 YPHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAWREFYAQV 293

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           + F  +V + + F  +   IEW  D   LQAWK G TG+PI+DA MRQL    +MHNR+R
Sbjct: 294 LYFNQNV-VSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVR 352

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI A+FL KDLLVDWR G ++F  +L D D A++NGGWQWAASTG D+ PYFR+FNP  Q
Sbjct: 353 MIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQ 412

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           G+R+DP   +I  ++PEL +VP   IH+ H  S  ++   +  YP PIVDH +     + 
Sbjct: 413 GERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHSQRREDAIA 472

Query: 473 QYYAAK 478
            +  A+
Sbjct: 473 MFERAR 478


>gi|21230891|ref|NP_636808.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769110|ref|YP_243872.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21112501|gb|AAM40732.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574442|gb|AAY49852.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 484

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 163/489 (33%), Positives = 238/489 (48%), Gaps = 25/489 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +    MS  +VW R DLR+ DN AL AA  ++    I ++I  P +  Q    A    + 
Sbjct: 8   RCRVCMSYAIVWFRRDLRLEDNPALRAAL-DAGHDPIPLYIDAPHEEGQWAPGAASRAWR 66

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  SL  +G      Q     DS + LD+   Q     +++NR+YE     RD 
Sbjct: 67  HRSLAALDASLRARGSALLIRQ----GDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDA 122

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +++ L+ R +  +S + ++L  P ++     + YKV+TPF +  +  L   D    P  
Sbjct: 123 QIKRSLRERGLEVQSCNAALLFEPWTLATQQGRPYKVFTPFWRNALTQLRLPDAMPAPRS 182

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDI 236
              L   +   ++      P  A D  F      GE  A  +L  F    +  Y E RD 
Sbjct: 183 LPPLPASLDGVHVDALNLLPTPAWDQGFWEHWQPGEAGAHEMLEIFVDGALSGYRENRDR 242

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHL 294
           P   GTSQLSP+L  G ++P +  + L+ +        ++GA    ++ +L WR+F  HL
Sbjct: 243 PDRVGTSQLSPHLHFGEIAPWRIASTLEAQR-----SARNGADIDGYIRQLGWRDFAYHL 297

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +  +P     +   P     +W   D   L AW++G TG PI+DA +RQL   GWMHNR+
Sbjct: 298 LHHFPDTTT-QNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRV 356

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI AS L K L V W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  
Sbjct: 357 RMIVASLLCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVT 416

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---NDLSLNYP-LPIVDHKKACHH 469
           Q ++FDPQ T+I  W+PEL  +P +   AP  WL       L+  YP  PI+   +    
Sbjct: 417 QAEKFDPQATYITRWIPELAALPVKERFAP--WLHPLSLARLAPTYPRAPIIGLAEGRDA 474

Query: 470 TLNQYYAAK 478
            L  Y   +
Sbjct: 475 ALAAYAGTR 483


>gi|258654813|ref|YP_003203969.1| deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM
           44233]
 gi|258558038|gb|ACV80980.1| Deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM
           44233]
          Length = 459

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 159/476 (33%), Positives = 228/476 (47%), Gaps = 32/476 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAAC-HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           S  L+W R DLR+ D+ AL AA  HN   +V+ VF+A        G   R    +  +L 
Sbjct: 3   STSLLWFRRDLRLGDHPALAAAADHNH--RVLGVFVADDVPLDASGSPRRA--VLARTLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + +++  + ++      S        +D+  +        Y R       RRD+ +++ 
Sbjct: 59  ALAQAMDGRLLIAHGRPRSVLPRLARAVDADVVHVSADYGPYGR-------RRDEQVQRA 111

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ   V   +      + PG +     + Y V+TPF +    +  +   RS     +   
Sbjct: 112 LQDAGVEWVATGSPYAVAPGRVRKSNGERYAVFTPFYRGWTDHGWRKPARS--GSGVDWV 169

Query: 186 GPVTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            P     I    P+ +     A   +  +GEQ AL   R F  E +  Y   RD P   G
Sbjct: 170 DPGEVDGITAHDPQEYARTVPAGMSLPEVGEQAALDGWRTFRDEALDDYDGDRDRPDRPG 229

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS +S YL  G + PR           DL  +  +GA S+  EL WREFY   +   P  
Sbjct: 230 TSHMSVYLKWGSIHPRTL-------LADLAGRRSTGAASYRRELAWREFYADSVFHLPES 282

Query: 302 CMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                  P  +++ W+         +AW+ G TG+P IDA MRQL   GWMHNRLRM TA
Sbjct: 283 VW-TSVDPVIDRMAWDSGQPAEERFEAWRAGRTGYPFIDAGMRQLLAEGWMHNRLRMATA 341

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL+KDL + W+ G E+F+  L+DGD ASNN GWQW A +G  + P+FRIFNP  QG++F
Sbjct: 342 SFLIKDLHLPWQRGAEHFLEHLVDGDYASNNHGWQWVAGSGAQAAPFFRIFNPLTQGEKF 401

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           DP G F+R ++PEL +VP + +H P  W     +   YP PIVDH       L ++
Sbjct: 402 DPSGDFVRRYIPELRDVPGRKVHRP--WELDGGVPAGYPEPIVDHADERAEALRRW 455


>gi|126695647|ref|YP_001090533.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301]
 gi|126542690|gb|ABO16932.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301]
          Length = 478

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 167/472 (35%), Positives = 241/472 (51%), Gaps = 33/472 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN++L  A   S+A + + +I           ++R + F+  SL ++  
Sbjct: 7   LFWHRKDLRIFDNQSLIKAFSLSNA-ITSTYIFDKNYPHDFNANSR-AWFLGNSLQELGN 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G      +     D +  +     +     +F+N+  E  E+ RD  ++K L+ +
Sbjct: 65  NWKKMGSRLIMEE----GDPVLIIPQLAKKIDAKFVFWNKSIEPYEINRDLKIKKNLEEQ 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---------------IQNLVQADL 174
            I      D +L+ P  I +   + Y VY PF K L               +      D 
Sbjct: 121 NIQVIETWDHLLIEPLKIFSGNNKPYSVYGPFYKNLKSKMNLLGPYDQDKVVFQFKDIDN 180

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQ 233
           +      I  +  V    I +   +P   I P  P GE  A  IL  F  EK +Y Y   
Sbjct: 181 KLKENKTINSSDSVLEKFI-KNIKFPGSNICPCKP-GENAAETILENFINEKKIYSYDSA 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYR 292
           RD P+  GTS LS  L  G +S R+ WN       D   +    +  +W  EL+WREFY+
Sbjct: 239 RDFPSHNGTSFLSASLRFGTISIRKIWNATLNLNSDCANRVNYLSIETWQKELVWREFYQ 298

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H +  +P +  G P+    +   W  ++   Q W  G TG PI+DAAMRQLN+ GWMHNR
Sbjct: 299 HCLFHFPELEKG-PYRKKWDHFPWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNR 357

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFLVKDL+ +W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP 
Sbjct: 358 CRMIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPY 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKNDLSLNYPLPIVDH 463
            Q K+FDP   +I++W+PEL+ V  ++ ++   S L+KN    NY  PIV+H
Sbjct: 417 TQAKKFDPICEYIKYWIPELSKVSNSELLNGEISNLEKN----NYSSPIVNH 464


>gi|188992258|ref|YP_001904268.1| Putative photolyase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734018|emb|CAP52224.1| Putative photolyase [Xanthomonas campestris pv. campestris]
          Length = 520

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 163/489 (33%), Positives = 237/489 (48%), Gaps = 25/489 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +    MS  +VW R DLR+ DN AL AA  ++    I ++I  P +  Q    A    + 
Sbjct: 44  RCRVCMSYAIVWFRRDLRLEDNPALRAAL-DAGHDPIPLYIDAPHEEGQWAPGAASRAWR 102

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  SL  +G      Q     DS + LD+   Q     +++NR+YE     RD 
Sbjct: 103 HRSLAALDASLRARGSALLIRQ----GDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDA 158

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +++ L+ R +  +S + ++L  P ++       YKV+TPF +  +  L   D    P  
Sbjct: 159 QIKRSLRERGLEVQSCNAALLFEPWTLATQQGGPYKVFTPFWRNALTQLRLPDAMPAPRS 218

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDI 236
              L   +   ++      P  A D  F      GE  A  +L  F    +  Y E RD 
Sbjct: 219 LPPLPASLDGVHVDALNLLPTPAWDQGFWEHWQPGEAGAHEMLEIFVDGALSGYRENRDR 278

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHL 294
           P   GTSQLSP+L  G ++P +  + L+ +        ++GA    ++ +L WR+F  HL
Sbjct: 279 PDRVGTSQLSPHLHFGEIAPWRIASTLEAQR-----SARNGADIDGYIRQLGWRDFAYHL 333

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +  +P     +   P     +W   D   L AW++G TG PI+DA +RQL   GWMHNR+
Sbjct: 334 LHHFPDTTT-QNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRV 392

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI AS L K L V W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  
Sbjct: 393 RMIVASLLCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVT 452

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---NDLSLNYP-LPIVDHKKACHH 469
           Q ++FDPQ T+I  W+PEL  +P +   AP  WL       L+  YP  PI+   +    
Sbjct: 453 QAEKFDPQATYITRWIPELAALPVKERFAP--WLHPLSLARLAPTYPRAPIIGLAEGRDA 510

Query: 470 TLNQYYAAK 478
            L  Y   +
Sbjct: 511 ALAAYAGTR 519


>gi|145224666|ref|YP_001135344.1| deoxyribodipyrimidine photo-lyase [Mycobacterium gilvum PYR-GCK]
 gi|145217152|gb|ABP46556.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium gilvum
           PYR-GCK]
          Length = 449

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 153/471 (32%), Positives = 237/471 (50%), Gaps = 37/471 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ D  AL AA    D  V+A ++  P      G  +R+  ++Y +L  +++
Sbjct: 4   VLWFRRDLRLADLPALVAAAE-VDGDVLACYVLDPRLKATGG--SRRLQYLYDALRDLRE 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL  + ++ +        D +  +         + +  +  +    +RRD+ +   L   
Sbjct: 61  SLDGRLLITR-------GDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALGD- 112

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V   +     L+ PG +       YKV+TPF  A  Q+  +    S P P+     P   
Sbjct: 113 VELVATGSPYLVSPGRVTKGDGSPYKVFTPFFDAWRQHGWRPPAESGP-PSAHWLDPADV 171

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +  P   D P   ++   P GE  A    ++F  + +  Y E R+ P +  TS++S +L 
Sbjct: 172 AGKPGITDIPDAGVELDLPAGETAARRQWKQFVDDGLAGYAEDRNRPDLAATSRMSAHLK 231

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G + PR     L             GA ++L EL +R+FY  ++A +P       +  W
Sbjct: 232 FGTIHPRTLAADLGR---------GKGAQAYLRELAFRDFYAAVVAEWPRST----WWNW 278

Query: 311 TE-----KIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  +++   D+    +AWK G TGFPI+DA MRQL   G++HNR+RMI ASFLVKD
Sbjct: 279 NSTFDAIEVDDGPDAQRAFEAWKAGRTGFPIVDAGMRQLAETGFVHNRVRMIVASFLVKD 338

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G  +F+ QL DGD+A+N  GWQWAA  G D+ PYFR+FNPT QGK+FDP G +
Sbjct: 339 LHLPWQWGARWFLDQLTDGDMANNQHGWQWAAGCGTDAAPYFRVFNPTTQGKKFDPAGVY 398

Query: 425 IRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           ++ W+ EL +V +   +H     LD+ D   +YP PIVDH +     L +Y
Sbjct: 399 VKRWVEELRDVASSVDVHN----LDR-DRPADYPEPIVDHAQERAEALRRY 444


>gi|166712667|ref|ZP_02243874.1| photolyase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 484

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 170/494 (34%), Positives = 248/494 (50%), Gaps = 33/494 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQ 57
           ++    MS  +VW R DLR+ DN AL AA  ++    I ++I  P +   W   G S   
Sbjct: 7   VRCRVRMSYAIVWFRRDLRLQDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGGASRTW 65

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            H   A+L    ++L   G+V +        DS + LD    Q     +++NR+YE    
Sbjct: 66  RHRSLAALEDALRALG-SGLVIRA------GDSAQVLDDVIAQTGAVAVYWNRKYEPATQ 118

Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLR 175
            RD  +++ L+ R I  +S + ++L  P  +       YKV+TPF R AL Q  + A   
Sbjct: 119 PRDAQIKRALRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAP 178

Query: 176 SL----PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
           +     P+PA+  T  +    +    ++  Q     +  GE  A  +L  F    +  Y 
Sbjct: 179 APGSLPPLPAMLKTDALDTLQLVPSLNWD-QGFWEHWHAGEAGAHEMLEIFIDGGLSGYR 237

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWRE 289
           E RD P   GTSQLSP+L  G ++P +  + L+ +        ++GA    ++ +L WR+
Sbjct: 238 ENRDRPDRVGTSQLSPHLHFGEIAPWRIASALEAQRT-----ARNGAEIDGYIRQLGWRD 292

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           F  HL+  +P     +   P  E  +W K D   LQAW++G TG PI+DA MRQL   GW
Sbjct: 293 FAYHLLHHFPDTT-NQNLNPRFEGFDWAKVDPVALQAWQRGRTGVPIVDAGMRQLWHTGW 351

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RMI ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+
Sbjct: 352 MHNRVRMIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRV 411

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYP-LPIVDHK 464
           FNP  Q ++FDP  T+I  W+PEL  +P +   AP  WL    L+     YP  PI+   
Sbjct: 412 FNPVTQAEKFDPHATYITRWVPELGKLPVKERFAP--WLHPLSLARFAPEYPRTPIIGLA 469

Query: 465 KACHHTLNQYYAAK 478
           +     L  Y  ++
Sbjct: 470 EGRDAALAAYSKSR 483


>gi|217976568|ref|YP_002360715.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
 gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
          Length = 486

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 165/501 (32%), Positives = 257/501 (51%), Gaps = 39/501 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQS 58
           M A    +  +VW R+DLR+ DN+AL AA  ++   ++ V+I       +R  G +AR  
Sbjct: 1   MAAPKTQNTAIVWFRDDLRLADNEALAAAL-STGGPLLCVYILEDGTAGFRPLGGAARW- 58

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            +++ SL  + + ++ KG       C    ++   L +         + + R+Y   E+ 
Sbjct: 59  -WLHHSLQALGQDIAAKGGRLDLF-CG---EARRILPALAEAAGARIICWTRRYGGPEMA 113

Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA------LIQNLVQ 171
            D  L+ + +   V  KSF+  +L  P  I       + VYTP+ +A      + + L  
Sbjct: 114 VDAALKAQFKTSGVEAKSFNGHLLHEPWDITRGDGHGFAVYTPYWRAASAAAQVGEPLPA 173

Query: 172 AD-LRSLPVP--AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
            D L + P+P  A+R T     + +P   D+    +   +  GE  A   L+ F + ++ 
Sbjct: 174 PDRLPAAPIPRGALRTTSIEALALLPEKPDWA-GGLRAAWRPGENGAQERLKAFLEGEIA 232

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y  +R+ P+    S+LSP+L  G + PRQ +  ++  + +   K   G   +L EL WR
Sbjct: 233 SYSLERNRPSADAVSRLSPHLRFGEIGPRQIFAAVRTAWDNAAQK---GGVKFLAELGWR 289

Query: 289 EFYRHLMAFYPSVC---MGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EF  HL  ++P      + + F  +PW E          L AW++G TG+P+IDA MR+L
Sbjct: 290 EFNYHLSFYHPDAARQNIQRRFDKMPWREPA-----PRELSAWQRGETGYPLIDAGMREL 344

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              G+MHNR+RM+ ASFL+K LL+DWRIGE +F   L D D A+N   WQW A +G D+ 
Sbjct: 345 WATGYMHNRVRMVVASFLIKHLLIDWRIGENWFWDTLCDADPANNPMNWQWVAGSGADAA 404

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457
           PYFRIFNP +QG++FD  G ++R W+PEL  +P ++IH    AP + L    + L  NYP
Sbjct: 405 PYFRIFNPVLQGEKFDAAGDYVRRWIPELAKLPNKWIHKPFAAPPALLRGAGVELGKNYP 464

Query: 458 LPIVDHKKACHHTLNQYYAAK 478
            PIVD  +     L  +   K
Sbjct: 465 RPIVDLAEGRARALAAFEKVK 485


>gi|300790232|ref|YP_003770523.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32]
 gi|299799746|gb|ADJ50121.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32]
          Length = 448

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 237/469 (50%), Gaps = 38/469 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ D+ AL  A  +S   V+A+++   E   + G + R++ F+Y  L ++ +
Sbjct: 8   VLWFRRDLRLGDHAALLEASRHS-KHVLALYVLD-EALLKPGGAPREA-FLYGCLEKLNE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L  + ++ +    +    + + + +  +        Y R       RRD  + K L +H
Sbjct: 65  QLGGRLMLVRGEPAAEVVKAAKKIGAAAVHVSADTGPYGR-------RRDASVAKALAEH 117

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187
            +       S  + PG +       Y+V+TPF +A          R    PA   TGP  
Sbjct: 118 NIEWVETGSSYAVTPGRVTKPDGSPYRVFTPFFRAWTA-------RGWHSPAD--TGPSL 168

Query: 188 VTPSNIPRFFDYP-FQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           V     PR    P   A+    P  GEQ AL +  +F  + +  Y E RD P  +GT++L
Sbjct: 169 VDWVEPPRSLKIPKAPAVSATLPEPGEQAALDVWHEFLDDGIETYDEDRDRPDREGTTRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G + PR           DL    + GA S  +E+ WREF+  ++   P     +
Sbjct: 229 SPYLRWGCIHPRTI-------LADLAGDDRVGAKSLRSEICWREFHADVLWHRPETAR-E 280

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +    + ++++ D    + W  G TG+PI+DA MRQL   GWMHNR+RM+ ASFLVKDL
Sbjct: 281 NYDHRFDGMKYDDDREAFERWCAGRTGYPIVDAGMRQLLAEGWMHNRVRMVVASFLVKDL 340

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W +G  +FM  L+DGDLASN   WQW A  G D+ PYFRIFNPT QG++FDP G ++
Sbjct: 341 HLPWWLGARHFMKHLVDGDLASNQLNWQWVAGCGTDAAPYFRIFNPTTQGEKFDPAGDYV 400

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           R ++PEL +VP + +H         D    YP P+VDH      +L +Y
Sbjct: 401 RKYVPELRSVPGKAVH------QLKDRPEGYPEPMVDHAHERQVSLERY 443


>gi|162146574|ref|YP_001601033.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785149|emb|CAP54694.1| putative deoxyribodipyrimidine photo-lyase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 463

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 232/466 (49%), Gaps = 39/466 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R D RI DN AL  A       +  V +        H   A    +++ ++  + +
Sbjct: 10  IVWFREDFRIADNMALLEAEKRGQPTLCIVILDD-----AHLPGAAARWWLHGAIRSLDE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L  +G+    H       ++  L     +     +F+NR+Y+      D  ++  L+ R
Sbjct: 65  TL--RGMGGALHVFRGAARAV--LAEIVRKTGAGAVFWNRRYDPAGREADTAIKADLRAR 120

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI------------QNLVQADLRSL 177
            +  +SF  ++L  P S+   ++  YK++T F +A              + LV A     
Sbjct: 121 GLTVRSFPGALLHEPWSVCTRSVAPYKIFTAFWRAACALPAPFPPHPAPERLVFAP--PP 178

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           P+P   +T       +PR  D+     D M+  GE+ A   L  F +     Y   RD P
Sbjct: 179 PMPDSLITRHEQDGLLPRHPDWAGGLRD-MWSPGEEEAGDQLSDFLRHDGAGYATARDFP 237

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
             + TS+LSP+L  G +SP Q W+             K+    +L EL WR+F   L+ F
Sbjct: 238 GDEATSRLSPFLRFGHVSPAQVWHAATR---------KACPDKFLMELGWRDFAWSLLFF 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +   +   P  + + W  D   L AW++G TG+P++DA MR+L   GWMHNR+RM+ 
Sbjct: 289 NPDLAT-RNLRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVRMVA 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVK LL+DWR GE +F   L+D D ASN   WQW A TG D+ PYFR+ NP +Q ++
Sbjct: 348 ASFLVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQSRK 407

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           FDP G +IR W+PEL ++    IHAP  W  ++  +  YP PIVDH
Sbjct: 408 FDPHGVYIRRWVPELAHLSDDAIHAP--W--ESGATHPYPAPIVDH 449


>gi|307354928|ref|YP_003895979.1| deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM
           11571]
 gi|307158161|gb|ADN37541.1| Deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM
           11571]
          Length = 475

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 163/474 (34%), Positives = 239/474 (50%), Gaps = 40/474 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHF 60
           + T ++S H+     DLRI DN  L +A  +S++ VI  F A      ++  +   +  F
Sbjct: 3   EKTFSLSAHI--FTRDLRIDDNPPLLSALASSES-VITFFAAEKNLATENPALCENRLAF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  ++++KG   ++     +D+    L     +  V  ++  R Y    ++R+
Sbjct: 60  LSESLSDLSGAIAEKGGEIRF-----YDEGALKLAEKLCRTGVEAVYMTRDYTPYAIKRE 114

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQM-------YKVYTPF-RKALIQNLVQA 172
             L+K       C     S    PG++LN    +       YKV+TPF R A +  + + 
Sbjct: 115 NSLKK------TCNDAGCSFFPVPGALLNEPEDVRKSDGEPYKVFTPFYRNASLIPVHEP 168

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
           +  +    +          +IP       +A +  F  G    L +L +  + K   Y +
Sbjct: 169 ETCTFQNFSREELFDGASHDIPFGKSGTEEAKNRAFSGGRSEGLRLLGETGRLK--NYED 226

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD PA   TS LS +L  G +S R+   R+ +      + P  G    + +L WR+F+ 
Sbjct: 227 ERDFPAKACTSMLSAHLRFGTVSVREICRRISD-----TLGPGHG---LIRQLYWRDFFT 278

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H+   YP V  G PF    E + W     L   W +G TGFPIIDA MR+LN  G+MHNR
Sbjct: 279 HIAYHYPHVFKG-PFQKRFESLHWTDSKELFDKWCKGMTGFPIIDAGMRELNDTGYMHNR 337

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R+  ASFLVKDL +DWR GE YF S+L D D + NNG WQW+ASTG D+ PYFRIFNP 
Sbjct: 338 ERLAAASFLVKDLHIDWRSGERYFASKLTDYDPSVNNGNWQWSASTGCDAQPYFRIFNPW 397

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHK 464
           +Q K+FDP   +IR W+PEL+++  + IH     LDK        YP PIVDHK
Sbjct: 398 LQQKKFDPDCIYIRRWVPELSDLEPKEIHN----LDKTGSVPPAGYPNPIVDHK 447


>gi|53719958|ref|YP_108944.1| putative DNA photolyase [Burkholderia pseudomallei K96243]
 gi|126453768|ref|YP_001066985.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a]
 gi|134277838|ref|ZP_01764553.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305]
 gi|226200012|ref|ZP_03795562.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
           Pakistan 9]
 gi|242315962|ref|ZP_04814978.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b]
 gi|254195952|ref|ZP_04902378.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13]
 gi|254296960|ref|ZP_04964413.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e]
 gi|52210372|emb|CAH36352.1| putative DNA photolyase [Burkholderia pseudomallei K96243]
 gi|126227410|gb|ABN90950.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a]
 gi|134251488|gb|EBA51567.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305]
 gi|157807746|gb|EDO84916.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e]
 gi|169652697|gb|EDS85390.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13]
 gi|225928068|gb|EEH24105.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
           Pakistan 9]
 gi|242139201|gb|EES25603.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b]
          Length = 486

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 160/503 (31%), Positives = 250/503 (49%), Gaps = 42/503 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     D
Sbjct: 59  LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++       R +P 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 167

Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223
           P +    RL G   P+ + R         ++P  P            GE  A   LR F 
Sbjct: 168 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 227

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+
Sbjct: 228 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 286

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL WREF    +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L
Sbjct: 287 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 345

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ 
Sbjct: 346 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 405

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455
           PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W             L   
Sbjct: 406 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 463

Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478
           YPLPIV H  A    L+ + A +
Sbjct: 464 YPLPIVAHDAARRRALDAFGAIR 486


>gi|222148397|ref|YP_002549354.1| DNA photolyase [Agrobacterium vitis S4]
 gi|221735385|gb|ACM36348.1| DNA photolyase [Agrobacterium vitis S4]
          Length = 483

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 166/490 (33%), Positives = 249/490 (50%), Gaps = 43/490 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  ++W R DLR+ DN+AL AA   +   VI ++I  PE+     +   Q+ +++ SL+ 
Sbjct: 7   SPTILWFRKDLRLDDNRALLAALQAA-GPVIPLYIREPEEMGTGPLGPAQAWWLHHSLVS 65

Query: 68  VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +SL   G  +V +             L     +     + +NR+Y+ + +  D  L+ 
Sbjct: 66  LDQSLQSYGSRLVLRRGPPGQV------LRHLIEETGSKAVHWNRRYDPSGMAIDAELKA 119

Query: 126 RLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   +  +     LL  P  +   +   ++VYTPF +AL +   Q D    P P  R 
Sbjct: 120 ALRSDGLEATSHAGFLLHEPSKVKTGSGGPFRVYTPFWRALEK---QGDP---PPPVERP 173

Query: 185 TGPVTPSNIP---RFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
                P++ P   R  D+      P        ++  GE  A   L +F    +  Y  Q
Sbjct: 174 KTLHNPAHWPDSDRLEDWQLLPTKPDWAKEFSEIWTPGEPGAQDKLSQFIDHGLKGYRTQ 233

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA+  TS LSP+L++G +SP + W+       D+          +  EL+WREF  H
Sbjct: 234 RDFPALPHTSGLSPHLALGEISPARIWHATIGLGDDVST---DDYVHFRKELVWREFSYH 290

Query: 294 LMAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           L+  +  +        W ++     W K++  L AW++G TG+PI+DA MRQL   G MH
Sbjct: 291 LLFHFADLASQN----WNDRFNDFPWKKNAEFLSAWQRGQTGYPIVDAGMRQLWRHGVMH 346

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RMI ASFL+KDL++DWR GE +F   L+D D ASN   WQW A +G D+ P+FRIFN
Sbjct: 347 NRVRMIVASFLIKDLMIDWREGEAWFRYTLVDADPASNAASWQWVAGSGADASPFFRIFN 406

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHK 464
           P  Q ++FDP G +IR ++PEL  +P   IH    AP   L+K  ++L   YP P+VDHK
Sbjct: 407 PITQSEKFDPDGDYIRQFVPELAKLPNNLIHRPFEAPAPLLEKAGITLGKTYPAPLVDHK 466

Query: 465 KACHHTLNQY 474
           +A    L  Y
Sbjct: 467 RARAVALEAY 476


>gi|110679555|ref|YP_682562.1| deoxyribodipyrimidine photolyase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455671|gb|ABG31876.1| deoxyribodipyrimidine photolyase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 472

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 169/481 (35%), Positives = 241/481 (50%), Gaps = 37/481 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69
           LVW R DLR++D+ AL AA  + +  VI VFI   +Q    G + R +       L +  
Sbjct: 7   LVWFRRDLRLSDHPALDAAVKSGN-PVIPVFIHD-DQVETLGAAPRWRLGLGIGHLSETL 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           + L+ + I+ +         ++E L +  L+     +F++R Y+   V RD  ++  L Q
Sbjct: 65  EGLNSRLILRR-------GPALETLRTLILETGAGAVFWSRLYDPAAVERDTEVKAALKQ 117

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIRLT 185
             +  +SF   ++  P ++       YKVYTPF   +    V A L +   +  PA    
Sbjct: 118 DGIDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVDAPLSAPSRIDAPAA-WP 176

Query: 186 GPVTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G  T S  N+    D     + P   +GE  A   L  F  + V  Y   RD PAI GTS
Sbjct: 177 GSDTLSDWNMGAAMDRGAAVVAPYVRLGEAAAQTRLNTFIDKIVAGYDTTRDQPAIDGTS 236

Query: 244 QLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            LS  L++G +SP QCW    R +EE        K GA ++L EL+WREF  HLM   P 
Sbjct: 237 GLSENLALGEISPHQCWYAGLRAREE-------EKPGAETFLKELVWREFAYHLMHHTPR 289

Query: 301 VCMGKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +  G     W +   WN+D  +  ++ W+QG TG   +DAAMR++   G MHNR RMI A
Sbjct: 290 ILTGNWKEDW-DSFPWNRDETTQAVRRWQQGRTGIQFVDAAMREMYVTGRMHNRGRMIVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S+L K LL DW+IG ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q  +F
Sbjct: 349 SYLTKHLLSDWKIGLKWFEDCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           D    +++ W+ E    PTQ    Y  A P +W    D   +YP P+V   +     L  
Sbjct: 409 DKNRQYVKRWVAEERRAPTQTALSYFDAIPRAWGLSAD--QDYPAPVVAADEGRKRALEA 466

Query: 474 Y 474
           Y
Sbjct: 467 Y 467


>gi|237813094|ref|YP_002897545.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
           MSHR346]
 gi|237504878|gb|ACQ97196.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
           MSHR346]
          Length = 486

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 163/504 (32%), Positives = 252/504 (50%), Gaps = 44/504 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-QWRQHGISARQSH 59
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       R  G +AR   
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFDERVGGRPLGGAARW-- 57

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           +++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     
Sbjct: 58  WLHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAV 113

Query: 120 DKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++       R +P
Sbjct: 114 DNAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVP 166

Query: 179 VPAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKF 222
            P +    RL G   P+ + R         ++P  P            GE  A   LR F
Sbjct: 167 APPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAF 226

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
              ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L
Sbjct: 227 VDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFL 285

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           +EL WREF    +  +P +   +      + + W  D   L AW++G TG+P +DA MR+
Sbjct: 286 SELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRE 344

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+
Sbjct: 345 LWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADA 404

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSL 454
            PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W             L  
Sbjct: 405 APYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGE 462

Query: 455 NYPLPIVDHKKACHHTLNQYYAAK 478
            YPLPIV H  A    L+ + A +
Sbjct: 463 TYPLPIVAHDAARRRALDAFGAIR 486


>gi|76808656|ref|YP_334184.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b]
 gi|254258748|ref|ZP_04949802.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a]
 gi|76578109|gb|ABA47584.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b]
 gi|254217437|gb|EET06821.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a]
          Length = 486

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 160/503 (31%), Positives = 250/503 (49%), Gaps = 42/503 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     D
Sbjct: 59  LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAPRAVD 114

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++       R +P 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 167

Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223
           P +    RL G   P+ + R         ++P  P            GE  A   LR F 
Sbjct: 168 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 227

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+
Sbjct: 228 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 286

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL WREF    +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L
Sbjct: 287 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 345

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ 
Sbjct: 346 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 405

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455
           PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W             L   
Sbjct: 406 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 463

Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478
           YPLPIV H  A    L+ + A +
Sbjct: 464 YPLPIVAHDAARRRALDAFGAIR 486


>gi|85374236|ref|YP_458298.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594]
 gi|84787319|gb|ABC63501.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594]
          Length = 463

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 242/477 (50%), Gaps = 37/477 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VWLR DLR+ DN ALY A       V+AV++   E+ + H +      +++ SL  + K
Sbjct: 6   IVWLRRDLRMADNPALYHAAKA--GPVVAVYVLDDERPKDHKLGGAARWWLHHSLESLGK 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S   +       +     D++E L +         +  NR YE       +  +  L   
Sbjct: 64  SFGARNSRIVLRRG----DAVEELKTVANAVGAETVHANRHYEPWW----RKAQGELAEE 115

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +  K +D + L PPG +   +   YK+YTPF KA++Q +   D   +P P   L+ P   
Sbjct: 116 LELKLYDGNYLFPPGHVTTGSGDPYKIYTPFSKAMLQEMPPRD--EVPEPET-LSSPGEW 172

Query: 191 SNIPRFFDYPFQAIDPMFPIG-------EQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                  D+      P +  G        ++A H    +  ++V  Y + R++P++  TS
Sbjct: 173 PASDDLGDWNLLPTKPDWAGGLRDFWTVGEDAAHERLDWWSDEVDKYDDGRNMPSVDETS 232

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           Q+SP+L  G +SP Q W+R K++  D       G  ++  ELIWR++ ++++  +P+   
Sbjct: 233 QMSPHLHHGEISPVQIWHRFKDKRSD-------GWKTYEKELIWRDYAQNVICQFPAYPK 285

Query: 304 GKPFIPWTEKIEWNKDS--HLLQA----WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                 W   + W   +  H++Q     W++G TG+PI+DA MRQL   GWMHNR+RMI 
Sbjct: 286 ESYRDGWDADMAWRNPNRGHIIQEELKRWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMIA 345

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL+K LL+DWR GE++F   L+D D ASN   WQW + TG DS  + RI  P  Q ++
Sbjct: 346 ASFLIKHLLIDWRHGEKWFWDTLVDADYASNGTNWQWVSGTGVDSNMFSRIMAPLTQSEK 405

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           FD  G +IR ++PEL ++P + IH P     K D   +YP  I+ HK+     L  Y
Sbjct: 406 FDAAG-YIREYVPELADLPDETIHDPEEHGCKPD---DYPSKIIAHKEGRERALEAY 458


>gi|118472574|ref|YP_886913.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
           155]
 gi|118173861|gb|ABK74757.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
           155]
          Length = 452

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 229/468 (48%), Gaps = 27/468 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLLQVQ 69
           L+W R DLR  D+ A+  A    DA V+A ++  P   R  G S  R+  ++Y +L  ++
Sbjct: 4   LLWFRRDLRCADHPAVLDAAQG-DADVLACYVLDP---RLTGSSGDRRLAYLYGALRDLR 59

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L  K +V +        +    + +  +   V+  F       +E  R  L +  L  
Sbjct: 60  EQLGGKLLVTRGRPEQRIPELAAAIGAASVH--VSGDFSPFGLRRDEAVRAALAD--LPG 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V   +     L+ PG I       Y+V+TPF +A   +  +A   S P  A      + 
Sbjct: 116 DVGLYATGSPYLVTPGRITKDDGNPYRVFTPFFRAWRDHGWRAPADSGPGSARW----ID 171

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
           PS +P   + P    D   P GE  A    R F +E +  Y   R+ P +  TS++S +L
Sbjct: 172 PSEVPGGAEIPEPPTDLELPAGETAARAQWRAFVRESLRDYSSNRNRPDLDATSRMSAHL 231

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM---GKP 306
             G + PR     L+ +          GA ++L EL +R+FY  ++  +P        + 
Sbjct: 232 KFGTIHPRTMAADLERDGA------GDGAAAYLRELAFRDFYAAVLHHWPDSAWWNWNRT 285

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    E  E      L  AWK G TGFPI+DA MRQL   G++HNR+RMI ASFLVKDL 
Sbjct: 286 FDA-IETDEGPDAQRLFDAWKAGMTGFPIVDAGMRQLAATGFVHNRVRMIVASFLVKDLH 344

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + W+ G  +F+ QL+DGD+A+N  GWQW A  G D+ PYFR+FNPT QG++FDP G +IR
Sbjct: 345 LPWQWGARWFLDQLVDGDIANNQHGWQWTAGCGTDAAPYFRVFNPTKQGEKFDPDGVYIR 404

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            W+PEL +  T     P           +YP PIVDH +     L +Y
Sbjct: 405 RWVPELADPAT----VPDVHRIDGSRPADYPEPIVDHAQERAEALRRY 448


>gi|195995779|ref|XP_002107758.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens]
 gi|190588534|gb|EDV28556.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens]
          Length = 513

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 162/506 (32%), Positives = 247/506 (48%), Gaps = 43/506 (8%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           +++ +   LVWLR DLR+ DN AL+ A        + +F       R+ G +     ++Y
Sbjct: 2   SSSKIPCTLVWLRRDLRLIDNPALFHAAKRGQLITVYIFDEDCSGKRRTGQACLW--WLY 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  ++  LSQ  I        +  D+   L     +     +++NR YE  E  RD  
Sbjct: 60  HSLKSLRNQLSQWNIPLI---VKSGKDAFTILKKLLDRYNADAIYWNRCYEPFEYNRDYS 116

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +EKR   R I  +++ D VL  P  + N   Q ++++  +    +         SLP P 
Sbjct: 117 IEKRFVARKIKVETYQDRVLYEPWKVKNGKGQPFQLFPCYWNQCL---------SLPQPR 167

Query: 182 IRLTGPVTPSNIPRFFDYPFQ------------------AIDPMFPIGEQNALHILRKFC 223
                P    +     +Y +                    +   +  GE+ A+  L++F 
Sbjct: 168 KPYDKPKFTVHNQGCVEYKYDDAGVWQLLASIADNDTSTRLQDFWHPGEEGAIQKLKRFM 227

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR---LKEEFVDLLIKPKSGAFS 280
           K  +  Y E+RD   +  TS LSPYL  G +SP   W+    ++      +  P      
Sbjct: 228 KNSLKVYSEKRDCIWLDATSNLSPYLHFGEISPFTIWHTACFMRHSTTRSISVPLHCTKR 287

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           +L EL WREF  HL+  YP +   K F     +++   D   L AW+ G TG+PI+DA M
Sbjct: 288 YLTELGWREFTCHLLFHYPDL-PEKSFKSNFHQLKLEIDEEKLHAWQNGSTGYPIVDAGM 346

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQL+  G+M NR+RMI ASFL+  LL+ W+ GEE+F ++L+D DLA +   WQW A  G 
Sbjct: 347 RQLSQAGFMPNRVRMIVASFLIMHLLIPWQKGEEWFWNRLVDADLAQSVCNWQWIAGCGP 406

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN- 455
           D  PYFR+FNP IQG++FD +G ++R W+PE+  +P  Y+     AP + L   +++L  
Sbjct: 407 DVAPYFRMFNPVIQGEKFDAEGYYVRKWIPEIAKLPNSYVQKPWEAPPTMLKIANITLGK 466

Query: 456 -YPLPIVDHKKACHHTLNQYYAAKKQ 480
            YP PIV+HK A    L  Y   K++
Sbjct: 467 TYPRPIVEHKVARELALATYSQLKRK 492


>gi|254247729|ref|ZP_04941050.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
 gi|124872505|gb|EAY64221.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
          Length = 531

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 155/485 (31%), Positives = 241/485 (49%), Gaps = 33/485 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A  + +  +VW R+DLR+TD  AL  A   S   ++ VFI          +      +
Sbjct: 40  VSAKPSAAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFIDDTGAGAGPALGGAARWW 98

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL ++  +L++ G      +     D+   ++          +++NR+Y   +   D
Sbjct: 99  LHGSLARLDTALARHGGRLLLLRG----DAQREIERVVGDTGAAAVYWNRRYAQPQRDAD 154

Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L+  L+ R V  +S + S+L  P  +L  +   Y+V+T + +A  ++   A    LP 
Sbjct: 155 AALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVA--APLPA 212

Query: 180 PAIRLTGPVTPSNI-------------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
           P  R+     P  +             P   D+     D      E  AL  L  F    
Sbjct: 213 PE-RIAFHPWPQAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTTS 271

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           +  Y + RD P    TS+LSP+L  G +SPRQ W+ ++           + A  +L+EL 
Sbjct: 272 LAGYADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAVYAAHADKFLSELG 331

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF   L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T 
Sbjct: 332 WREFSYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTT 390

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYF
Sbjct: 391 GWMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYF 450

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND--LSLNYPL 458
           RIFNP  QG++ DP G ++R W+PEL  +    IHAP  W      L+     L ++YP 
Sbjct: 451 RIFNPVAQGQKCDPDGAYVRRWVPELAGLDDASIHAP--WEASPLALEAAGVRLGIDYPA 508

Query: 459 PIVDH 463
           P+V+H
Sbjct: 509 PLVEH 513


>gi|188575662|ref|YP_001912591.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520114|gb|ACD58059.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 472

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 171/488 (35%), Positives = 248/488 (50%), Gaps = 33/488 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63
           MS  +VW R DLR+ DN AL AA  ++    I ++I  P +   W     S    H   A
Sbjct: 1   MSYAIVWFRRDLRLQDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLA 59

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L    ++L   G+V +        DS + LD+   Q     +++NR+YE     RD  +
Sbjct: 60  ALEDALRALG-SGLVIRA------GDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDAQI 112

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---RSLP 178
           ++ L+ R I  +S + ++L  P  +       YKV+TPF R AL Q  + A     RSLP
Sbjct: 113 KRALRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRSLP 172

Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            +PA+  T  +    +    ++  Q     +  GE  A  +L  F    +  Y + RD P
Sbjct: 173 PLPAMLKTDALDTLQLVPSLNWD-QGFWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDRP 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295
              GTSQLSP+L  G ++P +  + L+ +        ++GA    ++ +L WR+F  HL+
Sbjct: 232 DRVGTSQLSPHLHFGEIAPWRIASALEAQRT-----ARNGAEIDGYIRQLGWRDFAYHLL 286

Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             +P     +   P  E  +W K D   LQAW++G TG PI+DA MRQL   GWMHNR+R
Sbjct: 287 HHFPDTT-NQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 345

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q
Sbjct: 346 MIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQ 405

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYP-LPIVDHKKACHHT 470
            ++FDP  T+I  W+PEL  +P +   AP  WL    L+     YP  PI+   +     
Sbjct: 406 AEKFDPHATYITRWVPELGKLPVKERFAP--WLHPLSLARFAPEYPRTPIIGLAEGRDAA 463

Query: 471 LNQYYAAK 478
           L  Y  ++
Sbjct: 464 LAAYSKSR 471


>gi|58581149|ref|YP_200165.1| photolyase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623072|ref|YP_450444.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58425743|gb|AAW74780.1| photolyase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367012|dbj|BAE68170.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 484

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 171/494 (34%), Positives = 250/494 (50%), Gaps = 33/494 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQ 57
           ++    MS  +VW R DLR+ DN AL AA  ++    I ++I  P +   W     S   
Sbjct: 7   VRCRVRMSYAIVWFRRDLRLQDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTW 65

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            H   A+L    ++L   G+V +        DS + LD+   Q     +++NR+YE    
Sbjct: 66  RHRSLAALEDALRALG-SGLVIRA------GDSAQVLDAVIAQTGAVAVYWNRKYEPATQ 118

Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL- 174
            RD  +++ L+ R I  +S + ++L  P  +       YKV+TPF R AL Q  + A   
Sbjct: 119 PRDAQIKRALRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAP 178

Query: 175 --RSLP-VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
             RSLP +PA+  T  +    +    ++  Q     +  GE  A  +L  F    +  Y 
Sbjct: 179 APRSLPPLPAMLKTDALDTLQLVPSLNWD-QGFWEHWHAGEAGAHEMLEFFIDGGLSGYR 237

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWRE 289
           + RD P   GTSQLSP+L  G ++P +  + L+ +        ++GA    ++ +L WR+
Sbjct: 238 KNRDRPDRVGTSQLSPHLHFGEIAPWRIASALEAQRT-----ARNGAEIDGYIRQLGWRD 292

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           F  HL+  +P     +   P  E  +W K D   LQAW++G TG PI+DA MRQL   GW
Sbjct: 293 FAYHLLHHFPDTT-NQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGW 351

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RMI ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+
Sbjct: 352 MHNRVRMIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRV 411

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYP-LPIVDHK 464
           FNP  Q ++FDP  T+I  W+PEL  +P +   AP  WL    L+     YP  PI+   
Sbjct: 412 FNPVTQAEKFDPHATYITRWVPELGKLPVKERFAP--WLHPLSLARFAPEYPRTPIIGLA 469

Query: 465 KACHHTLNQYYAAK 478
           +     L  Y  ++
Sbjct: 470 EGRDAALAAYSKSR 483


>gi|315444996|ref|YP_004077875.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. Spyr1]
 gi|315263299|gb|ADU00041.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. Spyr1]
          Length = 446

 Score =  242 bits (618), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 154/471 (32%), Positives = 237/471 (50%), Gaps = 37/471 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ D  AL AA    D  V+A ++  P      G  +R+  ++Y +L  +++
Sbjct: 1   MLWFRRDLRLADLPALVAAAE-VDGDVLACYVLDPRLKATGG--SRRLQYLYDALRDLRE 57

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL  + ++ +        D +  +         + +  +  +    +RRD+ +   L   
Sbjct: 58  SLDGRLLITR-------GDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALGD- 109

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V   +     L+ PG +       YKV+TPF  A  Q+  +    S P  A  L  P   
Sbjct: 110 VELVATGSPYLVSPGRVTKGDGSPYKVFTPFFDAWRQHGWRPPAESGPRSAHWLD-PADV 168

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +  P   D P   ++   P GE  A    ++F  + +  Y E R+ P +  TS++S +L 
Sbjct: 169 AGKPGITDIPDAGVELDLPAGETAARRQWKQFVDDGLAGYAEDRNRPDLAATSRMSAHLK 228

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G + PR     L             GA ++L EL +R+FY  ++A +P       +  W
Sbjct: 229 FGTIHPRTLAADLGR---------GKGAQAYLRELAFRDFYAAVVAEWPRST----WWNW 275

Query: 311 TE-----KIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  +++   D+    +AWK G TGFPI+DA MRQL   G++HNR+RMI ASFLVKD
Sbjct: 276 NSTFDAIEVDDGPDAQRAFEAWKAGRTGFPIVDAGMRQLAETGFVHNRVRMIVASFLVKD 335

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G  +F+ QL DGD+A+N  GWQWAA  G D+ PYFR+FNPT QGK+FDP G +
Sbjct: 336 LHLPWQWGARWFLDQLTDGDMANNQHGWQWAAGCGTDAAPYFRVFNPTTQGKKFDPAGVY 395

Query: 425 IRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           ++ W+ EL +V +   +H     LD+ D   +YP PIVDH +     L +Y
Sbjct: 396 VKRWVEELRDVASSVDVHN----LDR-DRPADYPEPIVDHAQERAEALRRY 441


>gi|254184299|ref|ZP_04890889.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655]
 gi|184214830|gb|EDU11873.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655]
          Length = 534

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 159/503 (31%), Positives = 250/503 (49%), Gaps = 42/503 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 49  LSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 106

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     D
Sbjct: 107 LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 162

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++       R +P 
Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 215

Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223
           P +    RL G   P+ + R         ++P  P            GE  A   LR F 
Sbjct: 216 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 275

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+
Sbjct: 276 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 334

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL WREF    +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L
Sbjct: 335 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 393

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ 
Sbjct: 394 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 453

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455
           PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W             L   
Sbjct: 454 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 511

Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478
           YPLPIV H  A    L+ + A +
Sbjct: 512 YPLPIVAHDAARRRALDAFGAIR 534


>gi|209543430|ref|YP_002275659.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531107|gb|ACI51044.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 463

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 231/466 (49%), Gaps = 39/466 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R D RI DN AL  A       +  V +        H   A    +++ ++  + +
Sbjct: 10  IVWFREDFRIADNMALLEAEKRGQPTLCIVILDD-----AHLPGAAARWWLHGAIRSLDE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L  +G+    H       ++  L     +     +F+NR+Y+      D  ++  L+ R
Sbjct: 65  TL--RGMGGALHVFRGAARAV--LAEIVRKTGAGAVFWNRRYDPAGREADTAIKADLRAR 120

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI------------QNLVQADLRSL 177
            +  +SF  ++L  P S+   +   YK++T F +A              + LV A     
Sbjct: 121 GLTVRSFPGALLHEPWSVCTRSGAPYKIFTAFWRAACALPAPFPPHPAPERLVFAP--PP 178

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           P+P   +T       +PR  D+     D M+  GE+ A   L  F +     Y   RD P
Sbjct: 179 PMPDSLITRHEQDGLLPRHPDWAGGLRD-MWSPGEEEAGDQLSDFLRHDGAGYATARDFP 237

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
             + TS+LSP+L  G +SP Q W+             K+    +L EL WR+F   L+ F
Sbjct: 238 GDEATSRLSPFLRFGHVSPAQVWHAATR---------KACPDKFLMELGWRDFAWSLLFF 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +   +   P  + + W  D   L AW++G TG+P++DA MR+L   GWMHNR+RM+ 
Sbjct: 289 NPDLAT-RNLRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVRMVA 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVK LL+DWR GE +F   L+D D ASN   WQW A TG D+ PYFR+ NP +Q ++
Sbjct: 348 ASFLVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQSRK 407

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           FDP G +IR W+PEL ++    IHAP  W  ++  +  YP PIVDH
Sbjct: 408 FDPHGVYIRRWVPELAHLSDDAIHAP--W--ESGATHPYPAPIVDH 449


>gi|126735833|ref|ZP_01751578.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
 gi|126715020|gb|EBA11886.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
          Length = 472

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 167/484 (34%), Positives = 234/484 (48%), Gaps = 43/484 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ D++AL AAC ++D  VI VFI          + A     +  S+  +  
Sbjct: 7   LMWFRRDLRLGDHEALTAAC-DADRPVIPVFIYDE---LTESMGAAPKMRLGLSVADLAA 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL++KG      +    D     L           ++++R Y+ +   RD  ++  L+  
Sbjct: 63  SLNEKGSKLILRRGKALDV----LRELIKDTGADTVYWSRLYDPDGKTRDTDVKAALKDD 118

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF   VL  P ++       YKVYTP  K++  N V A   +LP P    T PV 
Sbjct: 119 GITAESFKGHVLFEPWTVETKIGGFYKVYTPMWKSVRGNDVPA---ALPTPG---TIPV- 171

Query: 190 PSNIPRFFDYPFQAIDPMF-----------PIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P + P+  D     +D               +GE  A H L  F    V  YV+ RD+PA
Sbjct: 172 PDSWPKSDDIADWQMDAAMHRGADTLKSHCTVGEAAASHRLGAFIANHVANYVKNRDLPA 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS LS  L+ G +SPR+CW+   +   D     K  A ++L EL+WREF  HL    
Sbjct: 232 VDGTSGLSENLTYGEISPRKCWHSGWQALND----GKGDAETFLKELVWREFAYHLAYHT 287

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           P +        W +   WN D  L  ++AWKQG TG   +DAAMR++   G MHNR RMI
Sbjct: 288 PRITTDNWKEDW-DAFPWNTDERLAEVKAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMI 346

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS+L K LL  W+IG  +F   L+D D  SN  GWQW+A +G D+ PYFR+FNP  Q  
Sbjct: 347 VASYLTKHLLCHWKIGMNWFADCLIDWDPCSNAMGWQWSAGSGPDATPYFRVFNPVTQLD 406

Query: 417 RFDPQGTFIRHWLPELNNVPTQ-----YIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHT 470
           +FD    +I+ W+ E    P+      Y   P SW +   D   +YP PIV         
Sbjct: 407 KFDKDRAYIKKWIAEGTKRPSATALSYYDMIPESWGMTAQD---SYPDPIVPADVGRSRA 463

Query: 471 LNQY 474
           L+ Y
Sbjct: 464 LDAY 467


>gi|84517100|ref|ZP_01004456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
 gi|84508995|gb|EAQ05456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
          Length = 471

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 159/479 (33%), Positives = 238/479 (49%), Gaps = 34/479 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW+R DLR+ D+ AL AAC  S   VIAV+I   +      +   Q   +  +L Q  K
Sbjct: 7   IVWVRRDLRLADHPALTAACE-SGQPVIAVYIHDDQV---ASLGGAQKLRLDLALAQFGK 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129
           +L+ +G      +      ++  L     +     ++++R Y      RD  ++  L+  
Sbjct: 63  TLADRGSRLILRKGP----ALGVLRDLIRETGAGAVYWSRLYHATANDRDAAVKSALKAD 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-V 188
            ++ +SF   +L  P ++       YKVYTP   A+  N V      LP PA ++T P V
Sbjct: 119 GIVARSFTGHLLFEPWTVATKTGGFYKVYTPMWNAVRGNEVA---EPLPCPA-KITAPAV 174

Query: 189 TPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            P++       + R        +     +GE  A   L  F  ++V  YV+ RD+PAI+G
Sbjct: 175 WPASDALADWQLRRAMQRGGDILARHCTVGEDAARDRLGAFIADRVANYVKGRDLPAIKG 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LS  L+ G +SPR CW+  +    D     K+ A  +L EL+WREF  HL    P +
Sbjct: 235 TSNLSENLTFGEISPRMCWHAGQRALRD----GKADAEVFLKELVWREFAYHLAHHTPRI 290

Query: 302 CMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                   W +   WN   +  + AW+QG TG P +DAAMR++   G MHNR RMI AS+
Sbjct: 291 LTDNWKEDW-DAFPWNTQITPEVAAWQQGRTGIPFVDAAMREMYVTGTMHNRGRMIVASY 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LL  W++G ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q  +FD 
Sbjct: 350 LTKHLLTHWKVGLDWFADHLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFDK 409

Query: 421 QGTFIRHWLPELNNVP-----TQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
              +++ W+ E    P     T +   P SW  + D +  YP P+V  ++     L+ Y
Sbjct: 410 DRAYVKRWIAERYRSPQDSALTYFEMIPQSWQMRPDAA--YPDPVVTPEQGRTRALDAY 466


>gi|27380421|ref|NP_771950.1| DNA photolyase [Bradyrhizobium japonicum USDA 110]
 gi|27353585|dbj|BAC50575.1| DNA photolyase [Bradyrhizobium japonicum USDA 110]
          Length = 442

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 143/386 (37%), Positives = 200/386 (51%), Gaps = 41/386 (10%)

Query: 121 KLLEKRLQHR-----VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           + +E+RL+       V  +SF   +L+PP +I N   +  +V+TPF + ++   +    +
Sbjct: 70  QAIERRLEAALAKLGVDSQSFPGDLLVPPSAIRNKEGRGLRVFTPFWRRVLS--LGDPPK 127

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKV 227
            LP P     GP   S+  R   +      P         +  GE +A   LR F K   
Sbjct: 128 PLPAPKQLRPGPKIVSD--RLESWQLAPTKPDWAGGLRERWTPGEASARARLRDFLKTIA 185

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELI 286
             Y   RD P   GTS LSP+L  G LSPRQ W+  +    +   + P  G   +L+EL 
Sbjct: 186 RGYAGDRDRPDRVGTSGLSPHLRFGELSPRQVWHAARFAAAEDAALGP--GIEKFLSELG 243

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIE-------WNKDSHLLQAWKQGYTGFPIIDAA 339
           WREF RHL+  +P +         TE ++       W  D  +L AW++G TG+PI+DA 
Sbjct: 244 WREFCRHLLHDHPDLA--------TENLQTNFDGFPWQSDGKVLAAWQRGRTGYPIVDAG 295

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           +R+L   G MHNR+RM+ ASFLVK LL+DWR GE +F   L+D D  SN   WQW A  G
Sbjct: 296 LRELWHTGVMHNRVRMVVASFLVKHLLIDWRDGEAWFWDTLVDADAGSNPANWQWVAGCG 355

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLS 453
            D+ PYFR+FNP +QG++FDP GT++R W+PEL  +P + IH P              L 
Sbjct: 356 ADAAPYFRVFNPQLQGEKFDPDGTYVRRWVPELQGLPAKLIHQPWQATPNELASAGVTLG 415

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKK 479
             YP PIVDH +     L+ Y   +K
Sbjct: 416 KTYPQPIVDHARGRERALSAYAKIRK 441


>gi|254191331|ref|ZP_04897835.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur
           52237]
 gi|157939003|gb|EDO94673.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur
           52237]
          Length = 534

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 159/503 (31%), Positives = 250/503 (49%), Gaps = 42/503 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 49  LSSSISIAPAVVWFRDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 106

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     D
Sbjct: 107 LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 162

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++       R +P 
Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 215

Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223
           P +    RL G   P+ + R         ++P  P            GE  A   LR F 
Sbjct: 216 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 275

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+
Sbjct: 276 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 334

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL WREF    +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L
Sbjct: 335 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 393

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ 
Sbjct: 394 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 453

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455
           PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W             L   
Sbjct: 454 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 511

Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478
           YPLPIV H  A    L+ + A +
Sbjct: 512 YPLPIVAHDAARRRALDAFGAIR 534


>gi|331694491|ref|YP_004330730.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949180|gb|AEA22877.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 462

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 157/478 (32%), Positives = 232/478 (48%), Gaps = 35/478 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ D + ++ A  +S    +A+F+  P      G + R   F+Y  L  +  
Sbjct: 6   VVWFRRDLRVRD-QPIFLAAADSGPAALALFVLDPALLDPSGPARRT--FLYGCLRALDD 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL--Q 128
           +L  + +V +        D  + +           +     +     RRD+ +E+ L   
Sbjct: 63  ALGGRLLVVR-------GDPADVVPRVAAAVGAGTVHVAADFGPYGTRRDQAVEEALAVD 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            R + ++      + PG +       ++V+TPFR+   +   +    +     +R   P 
Sbjct: 116 GRELVRT-GSPYAVAPGRVTKDDGDPFRVFTPFRRTWSRQRRRGPADTSAA-TVRWIDPS 173

Query: 189 TPSNIPRFFDYPF-QAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              + PR    P  + +D   P  GE  A    + F  + V  Y E R+ P ++GTS++S
Sbjct: 174 DEGSGPRAVRIPDDEPLDAALPDPGEDAAHRQWKAFLSDAVDRYGEDRNRPDVEGTSRMS 233

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-AFSWLNELIWREFYRHLMAFYPSVCM-- 303
            YL  G + PR   + L           +SG A ++  EL WREFY  ++   P      
Sbjct: 234 VYLKWGCIHPRTMLHDLSRH--------RSGSAETYRTELAWREFYADVLFRRPDSARHN 285

Query: 304 -GKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + F  +P        +   L  AW++G TGFPI+DA MRQL    WMHNRLRMI ASF
Sbjct: 286 YDRAFDALP---SASGKRADELFAAWREGRTGFPIVDAGMRQLRAQAWMHNRLRMIVASF 342

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDL + W  G  +FM  L+DGDLASN  GWQW A +G D  PYFRIFNP  QG+RFDP
Sbjct: 343 LVKDLHLPWWWGARHFMQLLVDGDLASNQHGWQWTAGSGTDPAPYFRIFNPVTQGERFDP 402

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            G ++R ++PEL +VP + +H P  W   + +   YP PIVDH+      L +Y   K
Sbjct: 403 DGDYVRRFVPELADVPGRAVHQP--WKLPDGVPDGYPQPIVDHRAERDEALARYERVK 458


>gi|87120903|ref|ZP_01076795.1| putative photolyase [Marinomonas sp. MED121]
 gi|86163741|gb|EAQ65014.1| putative photolyase [Marinomonas sp. MED121]
          Length = 475

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 164/489 (33%), Positives = 259/489 (52%), Gaps = 45/489 (9%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W R DLR++DN AL AA    D  V+ ++I   +   +  +      +++ SL  +  SL
Sbjct: 9   WFRQDLRLSDNPALSAAVSQGD--VLPIYILDDKNANEFAMGGASRWWLHHSLTALDASL 66

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
           +    +++        + IE LD       VT + +NR YE   ++RD+ +++ L+   I
Sbjct: 67  TACLNLYKGEPLEVLLELIERLD-------VTHVVWNRCYEPWRMQRDEKIKQTLKEIGI 119

Query: 133 -CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRLTG 186
             +S++ S+L  P  I       YKV+TPF +   +  ++A++   P+P     A+ L  
Sbjct: 120 QVQSYNASLLWEPWQIKKPDGTAYKVFTPFYR---KGCLKAEMPRQPLPRPDNQAVYLKD 176

Query: 187 PVTPSN-----IPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               +      +P   +D PF+    ++ IGE  A     KF +E +  Y E R+IP+  
Sbjct: 177 DKGQALDGLNLLPTIAWDEPFKD---LWQIGEDKAQSQFFKFLEEGLASYKEGRNIPSKP 233

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             ++LSP++  G +SP Q W  ++       +        + +EL WREF    +   PS
Sbjct: 234 FVTRLSPHIHFGEISPNQLWYGVQS------VADNEHVDHFCSELGWREFSYSQLFVNPS 287

Query: 301 V---CMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +    +   F   PW E+   +KDS LL+AW+QG TG P++DA MR+L   G+MHNR+RM
Sbjct: 288 LPTHNLQSKFDAFPWREEDTSSKDS-LLRAWQQGKTGIPMVDAGMRELWQTGYMHNRVRM 346

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFLVK+L + W  GE +F   LLD DLA+N+  WQW A  G D+ PYFRIFNP +QG
Sbjct: 347 IVASFLVKNLRIHWHQGERWFWDTLLDADLANNSASWQWVAGCGADAAPYFRIFNPVVQG 406

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHH 469
           +RFD +G +I+ ++PE++ +P +Y+     AP   L +  + L   YP PI+D K +   
Sbjct: 407 QRFDAEGDYIKKFVPEISLLPKKYLFSPWEAPELVLQEAGVKLGETYPQPIIDLKASREA 466

Query: 470 TLNQYYAAK 478
            L  + + K
Sbjct: 467 ALEAFKSLK 475


>gi|159044861|ref|YP_001533655.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
 gi|157912621|gb|ABV94054.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
          Length = 476

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 164/499 (32%), Positives = 241/499 (48%), Gaps = 41/499 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M + T  +  + W+R DLR++DN+AL AA     A VI VF+  P       + A     
Sbjct: 1   MSSQTDRAPVIWWVRRDLRLSDNRALVAAVETG-APVIPVFLCDPIL---DSLGAAPKWR 56

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
                  +  +L  +G    Y +     D++E L +   +     ++++R Y+ ++V RD
Sbjct: 57  FGLGAAALDAALRDRGSRLIYRKG----DALETLRALVSETGAETVYWSRAYDPDQVARD 112

Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           K ++  LQ   V  +SF   +L+ P ++   +   YKVYTPF KA+         R++P 
Sbjct: 113 KAVKSGLQDDGVDARSFTGHLLIEPWTVETGSGGFYKVYTPFWKAVRD-------RAMPE 165

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA-----------IDPMFPIGEQNALHILRKFCKEKVY 228
           P         P N P      + A           + P   IGE  A   L  F   +V 
Sbjct: 166 PQPAPDRIPAPDNWPESDRLDYWALGAAMNRGAAIVAPHLAIGEDAARGRLGAFIAHRVG 225

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y   RDIP I+GTS+LS  L+ G + P  CW   +      L + K+GA ++L EL+WR
Sbjct: 226 DYDRARDIPGIEGTSRLSENLTYGEIGPATCWQAGQR----ALAEGKAGAETFLKELVWR 281

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF  HL+   P +        W +   W  D+   + W++G TG   +DAAMR++   G 
Sbjct: 282 EFAYHLVWHTPHLIEKNWRAEW-DHFPWRDDNADAETWRRGRTGIRFVDAAMREMYVTGT 340

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR RMI AS+L K L+  WR+G+ +F   L+D D ASN  GWQWAA +G D+ PYFR+
Sbjct: 341 MHNRGRMIVASYLTKHLMTHWRVGQAWFDDCLVDWDPASNAMGWQWAAGSGPDAAPYFRV 400

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSW-LDKNDLSLNYPLPIVD 462
           FNP  Q  +FD   ++ R ++ E    P +   A     P SW L  +D    YP PIV 
Sbjct: 401 FNPDTQLDKFDRDQSYQRRFIAEGQGTPPEDARAYFDAIPRSWGLSPDDA---YPDPIVP 457

Query: 463 HKKACHHTLNQYYAAKKQS 481
             +     L+ Y A K  +
Sbjct: 458 LDEGRKRALDAYQARKDAA 476


>gi|134291309|ref|YP_001115078.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
           vietnamiensis G4]
 gi|134134498|gb|ABO58823.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
           vietnamiensis G4]
          Length = 505

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 162/500 (32%), Positives = 249/500 (49%), Gaps = 69/500 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQV 68
           +VW R+D R+ DN AL  A  ++   V+ V++  A P+  R  G + R   +++ SL ++
Sbjct: 14  VVWFRDDQRLADNPALTHAL-DTGHPVVCVYVHDAAPKHGRAMGGAQRW--WLHESLSKL 70

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L+  G      + +      E +  +        + +NR+Y   +   D  +++ L 
Sbjct: 71  DDALAAHGGSLILLRGNEH----EAITGFAAAIGAAMVVWNRRYAKAQTGTDASIKRDLI 126

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R I  S F+  +L  P ++       ++V++ + +A  ++        +P+PA      
Sbjct: 127 DRGIAVSTFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDF---FPPVPLPA------ 177

Query: 188 VTPSNIPRFFDYPFQA-----------IDPMFP-----------IGEQNALHILRKFCKE 225
             PS+I RFF  P  A           + P  P            GEQ A   L  F + 
Sbjct: 178 --PSHI-RFFPVPAHATPHVCTLRELELQPSAPDWAGGLRETWQCGEQAASDQLEAFLEN 234

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGA 278
            +  Y   RD PA + TS+LSPYL  G +S RQ W       + ++   +   +  K G 
Sbjct: 235 SLSDYPTLRDFPAARATSRLSPYLRFGNISVRQVWYATLSAADAMRSARIVRGVDSKDGP 294

Query: 279 FS-WLNELIWREFYRHLM-AFYP--SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            S +L+E+ WREF  HL+  F P   V   + F    + + W  D+  L+ W+ G TG+P
Sbjct: 295 LSKFLSEIGWREFSYHLLYHFAPLHQVNFRRQF----DSMPWRDDAKSLRKWQTGRTGYP 350

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           ++DA MR+L   GWMHNR+RM+ ASFL K LL+DWR GE +F   L+D D ASN   WQW
Sbjct: 351 LVDAGMRELWHTGWMHNRVRMVAASFLSKHLLIDWRQGEAWFWDTLVDADEASNPASWQW 410

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--- 451
            + +G D+ PYFRIFNP +Q ++FDP G + R W+PEL  +    +HAP  W    +   
Sbjct: 411 VSGSGADAAPYFRIFNPVLQAQKFDPHGDYTRRWVPELAQLSADTVHAP--WAASREQLQ 468

Query: 452 -----LSLNYPLPIVDHKKA 466
                L  +YP+PIVDH+ A
Sbjct: 469 RASVTLGRSYPMPIVDHQCA 488


>gi|325914014|ref|ZP_08176370.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539783|gb|EGD11423.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 472

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 174/484 (35%), Positives = 245/484 (50%), Gaps = 33/484 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63
           MS  +VW R DLR+ DN AL AA  ++    I ++I  P +   W     S    H   A
Sbjct: 1   MSYAIVWFRRDLRLQDNPALRAAL-DAGHDPIPLYIDAPHEEGEWAPGAASRSWRHRSLA 59

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L    ++L   G+V +        DS + LD    Q     +++NR+YE     RD  +
Sbjct: 60  ALDDTLRALG-SGLVIRA------GDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 112

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---RSLP 178
           ++ L+ R I  +S + ++L  P  +       YKV+TPF R AL Q  + A +   RSLP
Sbjct: 113 KRNLRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPRSLP 172

Query: 179 -VPAIRLTGPVTP-SNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            +PA   T  +   + +PR  +D+ F      +  GE  A  +L  F    +  Y E RD
Sbjct: 173 PLPATLETVALESLALLPRLDWDHGFWE---HWQPGEAGAHEMLEIFIDGALDGYRENRD 229

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P   GTSQLSP+L  G ++P +  + L+ +          G   ++ +L WR+F  HL+
Sbjct: 230 RPDRVGTSQLSPHLHFGEIAPWRIASTLEAQRNARNAAEIDG---YIRQLGWRDFSYHLL 286

Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             +P     +   P  E  +W K D   LQAW++G TG PI+DA MRQL   GWMHNR+R
Sbjct: 287 HHFPDTT-NQNLNPRFEGFDWAKADPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 345

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI AS L K L V W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q
Sbjct: 346 MIVASLLCKHLRVHWLDGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQ 405

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---NDLSLNYPL-PIVDHKKACHHT 470
            ++FDPQ T+I  W+PEL  +  +   AP  WL       L+  YP  PI+   +     
Sbjct: 406 AEKFDPQATYITRWVPELGKLAVKERFAP--WLHPLSLARLAPEYPRSPIIGLAEGRDAA 463

Query: 471 LNQY 474
           L  Y
Sbjct: 464 LAAY 467


>gi|332662341|ref|YP_004445129.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331155|gb|AEE48256.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 449

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 161/489 (32%), Positives = 240/489 (49%), Gaps = 61/489 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
           ++ L W R DLR+ DN  LY A   S+  V+ +FI   E   +       +  F++  + 
Sbjct: 3   AITLFWFRRDLRLQDNAGLYHAL-KSNFPVLPLFIFDTEILDELDDPEDARVAFLHQRIT 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q  L   G           +   E L  Y     V +++ N  YE   ++RD+ ++  
Sbjct: 62  ELQAELEHLGSSMLVRYGKPAEVWPEILQDYL----VAEVYTNHDYEPRAIQRDEAVQNL 117

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-- 183
           L Q  +   SF D V+     +     + Y V+TP+ + + +N + + + ++    I   
Sbjct: 118 LAQQNIPYFSFKDQVIFEKLEVTKLDGKPYTVFTPYSR-MWKNCLASQMETIQENGIEQV 176

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNA------LHILRKFCKEKVYYYVEQ 233
           ++  + P    +++   +Q   P  P    +G Q +        + R   K+    Y + 
Sbjct: 177 ISFFLKPYPTEKYYPNFWQTAPPPLPALSAMGFQPSSIAIPPTTVSRGLIKQ----YDKT 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNR---LKEEFVDLLIKPKSGAFSWLNELIWREF 290
           RD P + GTS+L  +   G +S R+   R   L E F              LNELIWR+F
Sbjct: 233 RDFPYLNGTSRLGIHFRFGTISIREKARRALELNETF--------------LNELIWRDF 278

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y  ++  +P V   + F P  ++IEW  D    + W  G TG+PI+DA +R+LN  G+MH
Sbjct: 279 YAQILFNFPHVAQ-RSFRPEYDQIEWRNDEDEFEKWCAGKTGYPIVDAGLRELNATGYMH 337

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RMITASFL K LL+DWR GE YF  +LLD DLASNNGGWQWAA  G D+ PYFR+F+
Sbjct: 338 NRVRMITASFLTKHLLIDWRWGEAYFAKKLLDYDLASNNGGWQWAAGCGTDAAPYFRVFS 397

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  Q ++FDP+  ++R W+PE                     +  YP PIVDHK A    
Sbjct: 398 PAAQQEKFDPEYKYVRKWVPEYG-------------------TDAYPKPIVDHKFARERC 438

Query: 471 LNQYYAAKK 479
           L  Y AA K
Sbjct: 439 LEVYKAALK 447


>gi|259416145|ref|ZP_05740065.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
           TrichCH4B]
 gi|259347584|gb|EEW59361.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
           TrichCH4B]
          Length = 474

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 158/482 (32%), Positives = 240/482 (49%), Gaps = 30/482 (6%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W+R DLR+ DN AL AA       +I ++I  P+      + A     +   L +  K+L
Sbjct: 10  WIRRDLRLRDNPALTAALETG-GPIIPLYIHDPQD---EALGAAPKFRLGLGLERFAKTL 65

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-V 131
              G      +     D++E L     +     + ++R Y+   ++RD  ++++L+   +
Sbjct: 66  EGHGSRLTLRKG----DALEVLREVIKESGAGHVVWSRLYDPEAIKRDTEIKEQLKAADI 121

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVP-AIRLTG 186
             KS    ++  P ++      MYKVYTPF KA+    ++ L+ A   +LP P A   T 
Sbjct: 122 TVKSTGGRLMFEPWTVETKDGGMYKVYTPFWKAVRDREVEGLIDAPA-NLPKPDAWPATD 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +   NI        + +     +G+  AL  L +F +E+V  Y   RD P+   TS+LS
Sbjct: 181 ELADYNISAAMRRGAEIVAGYCRVGDDAALEQLDRFLEERVQTYKADRDFPSRAATSELS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G +SP + W+   +   D     K GA  +L E++WREF  HLM   P +     
Sbjct: 241 ENLAWGEISPHRMWHLGAQAMRD----GKQGAEHFLKEVVWREFAYHLMYHSPHILTRNW 296

Query: 307 FIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              W +   W  D    L  W+QG TG+  +DAAMR+L   G MHNR RMI ASFL K L
Sbjct: 297 REEW-DGFPWQDDPGEALLRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASFLTKHL 355

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           ++ W+ G ++F   L+D D ASN  GWQW A +G D+ P+FRIFNP  Q ++FDP+G ++
Sbjct: 356 MIHWKFGMQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDPKGRYV 415

Query: 426 RHWLPELNNVPTQ-----YIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R+WL E  + P Q     +   P SW L   D       PI+D K+     L  Y+ ++ 
Sbjct: 416 RNWLAEGQSDPPQTATDFFAATPLSWELSAKDTRAR---PIIDLKRGRERALEAYHDSRD 472

Query: 480 QS 481
           +S
Sbjct: 473 KS 474


>gi|260220093|emb|CBA27286.1| Deoxyribodipyrimidine photo-lyase [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 534

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 164/469 (34%), Positives = 234/469 (49%), Gaps = 52/469 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  LVW R DLR  DN AL  A    D  V  VF+       +     R+  FI  S+  
Sbjct: 6   STGLVWFRRDLRTEDNAALSRALACCDT-VYCVFVYDTAILDKLPRQDRRVEFIQESVTA 64

Query: 68  VQKSLSQKGIVFQYHQCSNF----DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           ++ SL       + H         D +   +     Q +   +F  R YE   V RD  +
Sbjct: 65  LESSLQ----ALRGHASRTLITLHDVAHSAIPELAKQLQANAVFVARDYEPAAVTRDTAV 120

Query: 124 EKRL----QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           +++L    +  V+ K   D V+     +L    + Y V+TP+ +A +     A + S  V
Sbjct: 121 QQQLLAEGKQLVLVK---DQVIFEDREVLTQTGKPYGVFTPYHRAWL-----ARIGSELV 172

Query: 180 P--------AIRLTGP-VTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKV 227
           P        A+    P      +P   D  F+A +        G      +L+ F   ++
Sbjct: 173 PGHDVCRGHAVLAAAPDALAKPLPSLADLGFEATNLRALGMHGGSAAGEAMLQDFLG-RM 231

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK----PKSGAFSWLN 283
             Y E R+ P+++G S L  +L  G +S R+         V+L +K       GA  WL 
Sbjct: 232 DRYSEARNFPSVKGPSYLGVHLRFGTVSIRK--------LVNLALKRVRTGSEGASVWLA 283

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAM 340
           EL WR+FY  ++A +P V   + F P  + I W +      L +AW +G TG+PI+DAAM
Sbjct: 284 ELAWRDFYFQILANFPHVAT-QAFKPEYDAIAWEQGEEAEALFEAWCEGKTGYPIVDAAM 342

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
            QLN  G+MHNRLRM+  SFLVK L +DWR GE+YF  +L D DL++NNGGWQW AS+G 
Sbjct: 343 AQLNQTGYMHNRLRMVAGSFLVKHLGLDWRWGEKYFALKLNDFDLSANNGGWQWVASSGC 402

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
           D+ PYFRIFNP  Q ++FD QG FI+ +LP+L ++  + IHAP  WL K
Sbjct: 403 DAQPYFRIFNPVTQSEKFDGQGKFIKRYLPQLADLSDKAIHAP--WLAK 449


>gi|146297827|ref|YP_001192418.1| deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
 gi|146152245|gb|ABQ03099.1| Deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
          Length = 431

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 236/479 (49%), Gaps = 58/479 (12%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T   V   W R DLR+ DN  L+ A   SD  VI +FI   +       +  +  FIY S
Sbjct: 2   TKQKVSFFWFRRDLRLEDNTGLFHALQ-SDLPVIPLFIFDEDILDNLPKNDARVSFIYDS 60

Query: 65  LLQVQKSLS--QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           L ++   L+  +  I+ +  + +    S+  L  + +Q     +F+N+ YE   ++RD  
Sbjct: 61  LQKINNELNTFESSILIKKGKTTAVWKSL--LSEFDIQN----VFFNKDYEPFAIKRDTA 114

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +   L ++ V C SF D V+     I       Y VYTP++   ++      L ++P   
Sbjct: 115 ICSLLKENNVECFSFKDHVIFEEKEITKADGSPYTVYTPYKNKWLEKY--HFLGTVP--- 169

Query: 182 IRLTGPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                    SN  +  F +P      +  IG + +   +      ++  Y E RD PA+ 
Sbjct: 170 -ECDSSSMHSNFAKTKFSFP-----DLTEIGFKRSTIKVLPHNLTQIANYKETRDFPALD 223

Query: 241 GTSQLSPYLSIGVLSPRQC--WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            TS LSP+L  G +S R+   W   K +             ++L+ELIWREF+  ++  +
Sbjct: 224 STSYLSPHLRFGTVSIRKLVNWANRKNQ-------------TFLSELIWREFFIQILFSF 270

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P+ C+   F    + I+W  +    + W  G TG+P++DA MRQLN  G+MHNR+RM+ A
Sbjct: 271 PN-CVNHNFKSAYDGIQWRNNEEDFKRWCSGNTGYPMVDAGMRQLNETGYMHNRVRMVVA 329

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL++W+ GE YF  +LLD +LASN G WQWAA TG D+ PYFR+FNP IQ K+F
Sbjct: 330 SFLCKHLLINWQWGEAYFAEKLLDFELASNVGNWQWAAGTGCDAAPYFRVFNPEIQQKKF 389

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           D +G +IR W+PE +                      Y  P+VDH  A   T+  Y A 
Sbjct: 390 DEKGEYIRKWIPEFD--------------------FGYAEPMVDHAFARDRTIATYKAG 428


>gi|83953690|ref|ZP_00962411.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
 gi|83841635|gb|EAP80804.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
          Length = 473

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 168/486 (34%), Positives = 238/486 (48%), Gaps = 47/486 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--------ATPEQWRQH-GISARQSHFI 61
           L+W R DLR++D+ AL AA  N+   VI VFI            +WR   GI A      
Sbjct: 8   LLWYRRDLRLSDHPALSAAA-NAGRPVIPVFIKDKSVDALGAAPKWRLGLGIGA------ 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120
              L    + +S + I+ +        D++E L +   +     ++++R Y+ + V+RD 
Sbjct: 61  ---LADSLEGVSSRLILRE-------GDALEVLQALIKETGAGTVYWSRLYDPDSVKRDS 110

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---L 177
           K+ E      +  KSF   V+  P ++   A   YKVYTPF   +    V+  L +   L
Sbjct: 111 KIKETLCNDGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDL 170

Query: 178 PVP-AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           P P +   +  +   ++    D     + P   +GE+ A   L  F    V  Y + RDI
Sbjct: 171 PAPESWPDSDALDGWDLGAAMDRGADVVRPFVCLGEKAAQSRLGAFMAHGVADYKQTRDI 230

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P   GTS LS  LS+G +SP QCW+  +    D     K GA ++L EL+WREF  HLM 
Sbjct: 231 PGTDGTSNLSENLSLGEISPHQCWHAAQRALHD----GKQGAETFLKELVWREFAYHLMH 286

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             P +        W +   WN+D     ++AWKQG TG P +DAAMR+L   G MHNR R
Sbjct: 287 HTPRMLTDNWREEW-DAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRGR 345

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI AS+L K L+  WRIG+++F   L+D D ASN  GWQWAA +G D+ PYFR+FNP  Q
Sbjct: 346 MIVASYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPETQ 405

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSW-LDKNDLSLNYPLPIVDHKKACH 468
             +FD    +   W+ E    P +   A     P SW L  +D   +YP  I+   +   
Sbjct: 406 LDKFDKNRDYASRWIAEGRANPHKDALAFFDAIPRSWPLSADD---DYPEKIIALDEGRE 462

Query: 469 HTLNQY 474
             L  Y
Sbjct: 463 RALETY 468


>gi|117924446|ref|YP_865063.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus sp. MC-1]
 gi|117608202|gb|ABK43657.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus sp. MC-1]
          Length = 476

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 162/476 (34%), Positives = 239/476 (50%), Gaps = 49/476 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR++DN AL AA   +  +V+ V+I    Q    G + R           +Q+
Sbjct: 9   IVWFRRDLRLSDNPALLAA--TAMGQVLPVYIHENNQQEGGGGAWRWG---------LQQ 57

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+      Q   C    D    L         T +++NR Y    ++RD+ +++ L  R
Sbjct: 58  ALAALNADLQGKLCCYVGDPARLLPEVAHAVGATGVYWNRLYTPQAIKRDRAIKQSLIER 117

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPF--RKALIQNLVQADLRSLPVPAIRLTGP 187
            +  +SF+ S+L  P  +L      YKV+TP+  R  L+Q++ +  + + P         
Sbjct: 118 GLQVRSFNGSLLWEPWQVLKADKTPYKVFTPYYRRGCLVQDVPRQPMDAPPT-------- 169

Query: 188 VTPSNIPRFFDY-PFQAIDPM--------------FPIGEQNALHILRKFCKEKVYYYVE 232
           VT + +P        QA+D +              + +GE+ A      F    +  Y +
Sbjct: 170 VTWATLPAAAPAPSMQALDALLLGDVSWHKKWHGIWSMGEEAAQTRFEHFLSHGLACYDQ 229

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD P    TS+LS  L  G+LSP Q W  L+    D     +     + +EL WREF  
Sbjct: 230 GRDFPGRDCTSRLSTALQYGLLSPNQVWYGLEHAKAD-----EHSVDKFRSELAWREFAY 284

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           + +  +PS+   K F P  +   W +D   L  W+ G TG PI+DA MR+L   G MHNR
Sbjct: 285 YQLFHFPSLPH-KNFQPKFDHFPWLEDEVALGRWQTGQTGIPIVDAGMRELWQTGVMHNR 343

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RM+  SFLVK+LL+DWR G  +F   L+D DLA N+  WQW A  G D+ PYFRIFNP 
Sbjct: 344 VRMLVGSFLVKNLLLDWRAGAAWFKDCLVDYDLAINSASWQWVAGCGADAAPYFRIFNPV 403

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462
            QG++FD  GT+ R ++PEL N+P QY+     AP S L +  + L  +YP P+VD
Sbjct: 404 TQGEKFDRNGTYTRRFVPELANLPDQYLFKPWMAPASILRQAGVRLGQDYPEPLVD 459


>gi|300778354|ref|ZP_07088212.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
           ATCC 35910]
 gi|300503864|gb|EFK35004.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
           ATCC 35910]
          Length = 431

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 162/475 (34%), Positives = 231/475 (48%), Gaps = 56/475 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASLLQ 67
           + L WLR DLR+ DN  L+ A   SDA V+ VFI  T    +      R+  +I+ +L  
Sbjct: 5   ITLFWLRRDLRLEDNIGLHHALQ-SDAPVMPVFIFDTDILGKLEDKEDRRVDYIHQALTD 63

Query: 68  VQKSLSQKGIVFQYHQCSN--FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +  SL +      YH   N  +   IE       +  +  +F NR YE   + RDK +  
Sbjct: 64  INISLKK------YHSKLNTYYGKPIEIFRKLSEEYDIESVFCNRDYEPQAIERDKEIYY 117

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
               + I  K+  D V+     I+      Y VYTP+ K   + L     +++ +     
Sbjct: 118 FFTEKKIPFKACKDQVIFDKDQIVKKDGTPYTVYTPYAKKWRELLTPEHYQAVEL----- 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGT 242
                  N    F   +  I     IG +       K   +   +  Y + RD PA+Q T
Sbjct: 173 -------NFKNLFSQEYSDILTSKEIGFKKTDFKFSKPVLDASIIDDYDQYRDYPALQHT 225

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           +QL   L  G +S R+C        V   +K  +    WL+ELIWREF+  ++  +P V 
Sbjct: 226 TQLGIALRFGTISIRKC--------VAFALKHNA---VWLSELIWREFFMQILYHFPRV- 273

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           + + F    + I+W  +    + W +G TG+PI+DA MR+LN  G+MHNR+RMI ASFL 
Sbjct: 274 VHQSFKERYDDIQWRNNEKEFRHWCEGTTGYPIVDAGMRELNQTGYMHNRVRMIVASFLC 333

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE YF S+L D DLA+NNG WQWAA +G D+ PYFR+FNPT Q ++FD   
Sbjct: 334 KHLLIDWRWGEAYFASKLNDYDLAANNGNWQWAAGSGCDAAPYFRVFNPTTQTEKFDKDL 393

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +I+ WLPE N                   +  YP PIV+H  A    L++Y  A
Sbjct: 394 QYIKKWLPEWN-------------------TPEYPSPIVEHTFARERALSEYKKA 429


>gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
 gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
          Length = 481

 Score =  239 bits (610), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 164/491 (33%), Positives = 231/491 (47%), Gaps = 37/491 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYAS 64
           +  L W R+DLR+ D   L AA       VI VF+   A    W   G S    H    S
Sbjct: 3   NASLYWFRHDLRLADLPGLIAAAKA--GTVIPVFVWDEALGGDWSLGGASQWWLHHSLQS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L      L  + I+ +          +E       +     +F +RQY+      +  ++
Sbjct: 61  LAADLNGLGSRLILRRGETSKVIAKLLE-------ETGAQNVFASRQYQPWAADTENAVK 113

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----LRSLP 178
              +      K +  ++L  P +I       +KV+TPF +A ++           L + P
Sbjct: 114 AVTESAGGDFKRYPGTLLFEPENIRTGGGTPFKVFTPFWRAALKQPAPPQPQPVPLLTSP 173

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
               +     T    P+  ++     + ++  GE  A   LR F    V  Y   RD PA
Sbjct: 174 DEWPQSDALNTWQLCPKTPNWA-TGWEELWSPGEAGASGALRTFLDSHVDSYGNGRDFPA 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLMA 296
              TS+LSPYL  G +SPRQ W   +         P  G+    +L+E+ WREF  HL+A
Sbjct: 233 QPNTSRLSPYLKFGEISPRQIWWTAQNTKQS---NPDEGSSIDKFLSEIGWREFCNHLVA 289

Query: 297 FYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P++    P   W  K E   W      L AW+QG TG+PIIDA MR+L   G+MHNR+
Sbjct: 290 QFPAM----PDKAWNPKFEYFPWQSHQRNLSAWQQGNTGYPIIDAGMRELWQTGFMHNRV 345

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+ ASFL K LL+ WR+GE++F   LLD DLASN   WQW   +G D+ PYFRIFNP  
Sbjct: 346 RMVVASFLTKHLLMHWRVGEQWFWDCLLDADLASNACSWQWVGGSGADASPYFRIFNPIA 405

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
           QG++FD  G + R W+PEL  +P +Y++ P    +        +L   YP PIVDH+ A 
Sbjct: 406 QGEKFDKAGMYTRRWVPELAELPDKYLYKPWEAPELTLKAAGVELGTTYPNPIVDHRTAR 465

Query: 468 HHTLNQYYAAK 478
              L  Y   K
Sbjct: 466 ESALEAYATLK 476


>gi|149202510|ref|ZP_01879482.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
 gi|149143792|gb|EDM31826.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
          Length = 473

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 163/487 (33%), Positives = 235/487 (48%), Gaps = 33/487 (6%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T ++  +VWLR DLR+ D+ AL AA     A VI VFI          + A     +  S
Sbjct: 2   TDIAPSIVWLRRDLRLADHPALCAALAGGGA-VIPVFIHDESV---EALGAAPKWRLGLS 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + + L+  G      + +  D     L +   +     + ++R Y+   + RDK ++
Sbjct: 58  LASLARDLAACGSRLILRRGAALDV----LRALVAETGAGAVHWSRLYDPQSIARDKAVK 113

Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVP 180
             L+   V  +S    V+  P ++       Y+VY+P  +A+    V   L +   +P P
Sbjct: 114 SALREAGVDAQSHPGHVMFEPWTVETKTGGFYRVYSPMWRAVKDRDVAVPLTAPGQIPAP 173

Query: 181 AIRLTGPVTPS-NIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDI 236
            +    P + S +  +     ++  D   P   +GE  A+  L  F    +  Y + R+ 
Sbjct: 174 KVW---PASDSLDDWQMGAAMYRGADVCLPYQRVGEAAAMERLHAFADGAIAEYQDARNF 230

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA+  TS LS  L+ G +SPRQCW+  +      L     GA +WL EL+WREF  HLM 
Sbjct: 231 PAVDATSALSENLTYGEISPRQCWHAGQRA----LHGGAKGAETWLKELVWREFAYHLMY 286

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             P +  G     W +   W+ D+   +  AWKQG TG P +DAAMR++   G MHNR R
Sbjct: 287 HTPHILSGNWRTDW-DAFPWSTDADHPEVIAWKQGRTGEPFVDAAMREMYVTGKMHNRAR 345

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI AS+L K L+  W+IG ++F   L D D ASN  GWQWAA  G D+ PYFR+FNP  Q
Sbjct: 346 MIVASYLTKHLMTHWKIGLDWFAECLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQ 405

Query: 415 GKRFDPQGTFIRHWLPELNNVPT----QYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHH 469
             +FD  G + R W+ E    P      Y  A P +W  + D S+ YP  IVD  +    
Sbjct: 406 LDKFDRGGAYTRRWIAEGQRTPPATALDYFKAVPRAW--QLDPSMLYPGRIVDLSQGRQR 463

Query: 470 TLNQYYA 476
            LN Y A
Sbjct: 464 ALNAYEA 470


>gi|289670152|ref|ZP_06491227.1| photolyase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 484

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 167/491 (34%), Positives = 244/491 (49%), Gaps = 27/491 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           ++    MS  +VW R DLR+ DN AL AA  ++    I ++I  P +  +         +
Sbjct: 7   VRCRVRMSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGVASRTW 65

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
            + SL  +  +L  +G            DS + LD    Q     +++NR+YE     RD
Sbjct: 66  RHRSLAALDDALRARGSGL----VIRAGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRD 121

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---R 175
             +++ L+ R I  +S + ++L  P  +       YK++TPF R AL Q  + A +   R
Sbjct: 122 AQIKRALRERGIEAQSCNSALLFEPWQLSTQQGGPYKMFTPFWRNALTQLHLPAAVPAPR 181

Query: 176 SLP-VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           SLP +PA   T  +    +    ++  Q        GE  A  +L  F    +  Y E R
Sbjct: 182 SLPPLPAALKTDALDTLQLVPSLNWD-QGFWEHGQPGEAGAHEMLEIFIDGALSGYRENR 240

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYR 292
           D P   GTSQLSP+L  G ++P +  + L+          ++GA    ++ +L WR+F  
Sbjct: 241 DRPDRVGTSQLSPHLHFGEIAPWRIASTLEARRT-----ARNGAEIDGYIRQLGWRDFAY 295

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           HL+  +P     +   P  E  +W K D   LQAW++G TG PI+DA MRQL   GWMHN
Sbjct: 296 HLLHHFPDTT-NQNLNPRFEGFDWTKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHN 354

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMI ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP
Sbjct: 355 RVRMIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNP 414

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYP-LPIVDHKKAC 467
             Q ++FDPQ T+I  W+PEL  +  +   AP  WL    L+     YP  PI+   +  
Sbjct: 415 VTQAEKFDPQATYITRWVPELGKLAVKERFAP--WLHPLSLARFASEYPRAPIIGLAEGR 472

Query: 468 HHTLNQYYAAK 478
              L  Y  ++
Sbjct: 473 DAALAAYAKSR 483


>gi|325285379|ref|YP_004261169.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489]
 gi|324320833|gb|ADY28298.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489]
          Length = 429

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 154/470 (32%), Positives = 232/470 (49%), Gaps = 55/470 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + + W R DLRI DN AL  A  + +  V+ VFI       +      +  FI+ ++  +
Sbjct: 5   ISVFWFRRDLRIEDNTALCNALKSGNP-VLPVFIFDENILNELDADDARVTFIHKTISAI 63

Query: 69  QKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
             +L +   G++     C +    + W         V ++F+N+ YE     RD+ +   
Sbjct: 64  NLTLKEYNSGVL-----CLHTTPELAW-KKIVSTYNVERVFFNKDYEPYARERDQKITSF 117

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  + I  KS  DSV+     +L +    Y VYTP++   +      DL  +        
Sbjct: 118 LNDKSIKVKSNKDSVIFEENDVLKNDGDPYTVYTPYKNKWLSKFT-PDL--IEDKKCDFK 174

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           G +   N+    D+P      +  +G   +   +  +  E +  Y E+RD P+   T+ L
Sbjct: 175 GKLLEFNV----DFP-----SLENLGFSASNITVEPYNLEHLDIYAEKRDFPSDDITTYL 225

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMG 304
            P+L  G +S R+            LI+   G  S +L+EL+WREF+  ++  +P V + 
Sbjct: 226 GPHLRFGTVSVRK------------LIRGLDGLESVFLSELVWREFFTQILFHFPKV-VT 272

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F    + I+W  +    + W  G TG+P++DA MRQLN  G+MHNR+RMITA FL K 
Sbjct: 273 QNFRSKYDGIKWRNNKEDFEKWCTGNTGYPMVDAGMRQLNKTGYMHNRVRMITAGFLCKH 332

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DW+ GE YF  +LLD +LASNNG WQWAA TG D+ PYFRIFNP  Q K+FD    +
Sbjct: 333 LLIDWQWGEAYFAKKLLDYELASNNGNWQWAAGTGCDAAPYFRIFNPITQLKKFDKDFKY 392

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           ++HW+PEL+                     NYP P+V+HK A    L  Y
Sbjct: 393 VKHWIPELD-------------------GFNYPQPMVEHKAARERALKVY 423


>gi|107028642|ref|YP_625737.1| deoxyribodipyrimidine photolyase [Burkholderia cenocepacia AU 1054]
 gi|116690199|ref|YP_835822.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia HI2424]
 gi|105897806|gb|ABF80764.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
           AU 1054]
 gi|116648288|gb|ABK08929.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
           HI2424]
          Length = 519

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 154/486 (31%), Positives = 241/486 (49%), Gaps = 35/486 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A  +++  +VW R+DLR+TD  AL  A   S   ++ VF+          +      +
Sbjct: 28  VSAKPSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGAGAGPALGGAARWW 86

Query: 61  IYASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           ++ SL  +  +L++  G +          D+   ++          +++NR+Y   +   
Sbjct: 87  LHGSLAGLDAALARHDGRLLLLRG-----DAQREIERVVGDTGAAAVYWNRRYAQPQRDA 141

Query: 120 DKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  L+  L+ R V  +S + S+L  P  +L  +   Y+V+T + +A  ++   A    LP
Sbjct: 142 DAALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVA--APLP 199

Query: 179 VPAIRLTGPVTPSNI-------------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
            P  R+     P  +             P   D+     D      E  AL  L  F   
Sbjct: 200 APE-RIAFHPWPQAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTT 258

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
            +  Y + RD P    TS+LSP+L  G +SPRQ W+ ++           + A  +L+EL
Sbjct: 259 SLAGYADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAVYAAHADKFLSEL 318

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WREF   L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T
Sbjct: 319 GWREFSYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWT 377

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GWMHNR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PY
Sbjct: 378 TGWMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPY 437

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND--LSLNYP 457
           FRIFNP  QG++ DP G ++R W+PEL  +    IHAP  W      L+     L ++YP
Sbjct: 438 FRIFNPVAQGQKCDPDGAYVRRWVPELAGLDDASIHAP--WEASPLALEAAGVRLGIDYP 495

Query: 458 LPIVDH 463
            P+V+H
Sbjct: 496 APLVEH 501


>gi|126663929|ref|ZP_01734924.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
           BAL38]
 gi|126624193|gb|EAZ94886.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
           BAL38]
          Length = 428

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 161/472 (34%), Positives = 227/472 (48%), Gaps = 49/472 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++ W R DLR+ DN  L+ A  NS   V+ +FI   E   Q      +  FI+  L ++
Sbjct: 1   MNIFWFRRDLRLEDNVGLFHAL-NSTEDVLPIFIFDSEILSQLPKDDARVSFIHEQLEKI 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L++ G              IE       +  +T ++ N  YE    +RDK + +   
Sbjct: 60  QSELNKIGKSLAVFHGK----PIEIFTQLISENTITSVYTNHDYEPYARKRDKEMNQLFT 115

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   +  D V+     ++      Y VYTPF K   +N  +  L       +  T  
Sbjct: 116 TNGISFLTSKDQVIFEKSEVVKDDGSPYVVYTPFSKKWKENFKKIKL-------VHYTSE 168

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF--CKEKVYYYVEQRDIPAIQGTSQL 245
                + +   YPF ++     IG + +   +  F   +  +  Y   R+ PA+  TS L
Sbjct: 169 DKLDKVAKH-SYPFLSLTD---IGFEKSNIKVSAFDVSENLIQNYEATRNFPALNKTSYL 224

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
             YL  G +S R+         +   I  K+  F W NELIWREF+  ++  +P      
Sbjct: 225 GIYLRFGAVSIRKM--------IAKAIAEKNDTF-W-NELIWREFFMQILWHFPH-TYNS 273

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P  + I WN +  L Q W +G TG+P +DA MR+LN+ G MHNR+RMI ASFL K L
Sbjct: 274 SFRPKYDGIVWNNNEELFQKWCEGKTGYPFVDAGMRELNSTGHMHNRVRMIVASFLCKHL 333

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +LLD ++ASN G WQWAA +G D+ PYFRIFNPT Q K+FD    +I
Sbjct: 334 LIDWRWGETYFAQKLLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLKYI 393

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + W+PEL    T+Y                YP PIVDHK+A    L  Y  A
Sbjct: 394 KKWIPELE---TEY----------------YPKPIVDHKEARERCLKVYKEA 426


>gi|85708828|ref|ZP_01039894.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
 gi|85690362|gb|EAQ30365.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
          Length = 463

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 157/478 (32%), Positives = 242/478 (50%), Gaps = 40/478 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++WLR DLR+ DN ALY A       V+ V++   E    H +      +++ SL  + K
Sbjct: 6   ILWLRRDLRMADNPALYHAAKA--GPVVCVYVLDDEAPEHHRMGGASRWWLHHSLESLSK 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL  +       +     D++E L +         +  N  YE    +     +K+L+  
Sbjct: 64  SLGTRNAKLILRRG----DAVEELTTVANAVGADTIHANTHYEPWWRK----AQKKLKDE 115

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +  + +D   L P G +   +   YK+YTPF KAL Q L   D+  LP P   L+ P   
Sbjct: 116 IDLQLYDGVYLFPAGHVTTGSGDPYKIYTPFYKALRQELPPRDV--LPEPET-LSSPDDW 172

Query: 191 SNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                  D+      P         + +GE  A   L ++ ++ V  Y ++R+ P++  T
Sbjct: 173 PASDELADWNLLPTKPDWSGGIADFWEVGEDAAHERLSEW-EDHVADYEDKRNFPSVDKT 231

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP+L  G +SP Q W+ LK +  D       G  S+ +ELIWR++  +++  YP+  
Sbjct: 232 SRLSPHLHFGEISPVQVWHALKHKRSD-------GWNSFESELIWRDYAANVICEYPAYA 284

Query: 303 MGKPFIPWTEKIEW------NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             + +    +K+EW       K +  L+ W++G TG+PI+DA MRQL   GWMHNR+RMI
Sbjct: 285 -SENYREDYDKLEWRDPDSDEKAAKDLKKWQEGKTGYPIVDAGMRQLWQTGWMHNRVRMI 343

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFL+K LL+DWR GE++F   L+D D +SN   WQW A TG DS  + RI  P  Q +
Sbjct: 344 TASFLIKHLLIDWRKGEQWFWDCLVDADYSSNAVNWQWNAGTGVDSNMFSRIMAPLTQSE 403

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +FD    +IR ++PEL ++   YIH P    +   L   YP  ++ HK+     ++ Y
Sbjct: 404 KFD-AAAYIREYVPELADLDEPYIHDPE---EHGRLPKAYPAKMIAHKEGRERAMSAY 457


>gi|325528961|gb|EGD05987.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. TJI49]
          Length = 452

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 150/460 (32%), Positives = 231/460 (50%), Gaps = 38/460 (8%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +   Q  +++ SL ++  SLS  G      + +      E + S  ++ R   +F+NR+Y
Sbjct: 1   MGGAQKWWLHESLKKLDDSLSALGGSLLVLRGNEH----EAIRSLAVETRAAMVFWNRRY 56

Query: 113 EINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLV 170
              +   D  ++K L  R I   +F+  +L  P ++       ++V++ + R A   N  
Sbjct: 57  SKAQTEMDASIKKDLIGRGIDVSTFNGHLLREPWTVATREGLPFQVFSAYWRAARRDNFF 116

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALHIL 219
                 LP PA     PV+ +           A+ P  P            GE+ A H L
Sbjct: 117 PPC--PLPAPARITFFPVSRNVSAHVSTLSELALQPSTPDWAEGLRATWRCGEEAAGHQL 174

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLI 272
             F +     Y   RD PA + TS+LSPYL  G +S RQ W       + ++   V  + 
Sbjct: 175 EAFIENSFSDYAGARDFPATRATSRLSPYLRFGNISARQVWYATLSAVDAMRSRRVVRID 234

Query: 273 KPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
             K+ + + + +EL WREF  +L+ ++        F    + + W  D+  L+AW++G T
Sbjct: 235 DAKNESLNKFFSELGWREFSYYLL-YHCEPLHQFNFRRQFDAMPWRTDAKALRAWQRGKT 293

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G+P++DA MR+L   GWMHNR+RM+TASFL K LL+DWR GE +F   L+D D ASN  G
Sbjct: 294 GYPLVDAGMRELWHTGWMHNRVRMVTASFLTKHLLIDWREGEAWFWDTLVDADEASNPAG 353

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           WQW + +G D+ PYFRIFNP +QG++FD  G + R W+PEL+ +P + +H+P  W    +
Sbjct: 354 WQWVSGSGADAAPYFRIFNPVLQGEKFDSSGEYTRRWVPELSALPAETLHSP--WTASAE 411

Query: 452 --------LSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
                   L  +YP PIVDH+ A    L+       QS +
Sbjct: 412 ALREASIALGASYPFPIVDHQVARARALSSVEILNTQSQM 451


>gi|229488858|ref|ZP_04382724.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121]
 gi|229324362|gb|EEN90117.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121]
          Length = 448

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 149/475 (31%), Positives = 235/475 (49%), Gaps = 31/475 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  ++W R DLR+ D   L AA  ++  + + +F+   +     G S RQ+  ++A+L 
Sbjct: 1   MSNSVIWFRRDLRVGDLPTLTAAA-DAGGQTLGLFVLDEKLLGPAG-SPRQNQ-LFANLS 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  + +V +        D  + +          ++  +  Y     RRD  + ++
Sbjct: 58  ALDNQLDGRLMVVR-------GDPADVVPRVAESVGAEEVHISADYGPYGRRRDAAVAEK 110

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           ++       +     + PG +       YKV+TP+ +  +++  +    S  V  +R   
Sbjct: 111 VELIATGSPY----AVAPGRVTKADGDPYKVFTPYFRQWMEHGWRGPA-STDVGTVRWFD 165

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P      PR    P  +      +GE  AL   +++C+  +  Y ++R+ P +  TS++S
Sbjct: 166 PSEKDGGPRRVSIPAPSGTVSDVVGEAGALEQWKEYCENDLDRYDDERNRPDLDTTSRMS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L  G + PR           DL  +   GA ++  +L WR+FY  ++   P     K 
Sbjct: 226 IPLKYGTIHPRTM-------LADLSKRLGDGAQAYRRQLAWRDFYADILFQRPDSAR-KN 277

Query: 307 FIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +    +++  +          AW +G TGFPI+DA MRQL    WMHNR+RMI ASFLVK
Sbjct: 278 YDDKFDRLRHDGGVDADAAFTAWCEGKTGFPIVDAGMRQLAAENWMHNRVRMIVASFLVK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G  YFMSQL+DGDLASN  GWQW A +G D+ P+FR+FNP  QG++FDP GT
Sbjct: 338 DLHIPWWRGARYFMSQLVDGDLASNQHGWQWTAGSGTDASPFFRVFNPITQGEKFDPDGT 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++R W+PEL +VP + +H+      K    ++YP PIVDH       L +Y   K
Sbjct: 398 YVRRWVPELRDVPGKAVHSL-----KAMRPVDYPDPIVDHAHEREEALRRYGEIK 447


>gi|146340206|ref|YP_001205254.1| deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS278]
 gi|146193012|emb|CAL77021.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
           (Photoreactivating enzyme) [Bradyrhizobium sp. ORS278]
          Length = 415

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/396 (34%), Positives = 206/396 (52%), Gaps = 21/396 (5%)

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHAL 152
           L     +   + +++N   +    R    +E  L H  V  + F D +L+ P ++     
Sbjct: 19  LGQLARETNASAVYWNDVAQAGPRRVAASVEADLDHIGVASRVFPDDLLVDPATMSGKDG 78

Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTGPVTPSNIPRFFDYPFQ-----AIDP 206
           +  +V+TPF K ++   +    + LP PA + +   VT   +      P +      +  
Sbjct: 79  RGPRVFTPFWKRVLA--LGDPPKPLPTPARLPMVPDVTGLTVDDLRLEPTKPDWAGGLRA 136

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
            +  GE+ A   LR F +  V  Y   RD P I  TS+LSP+L  G ++PRQ W+  +  
Sbjct: 137 TWQAGERAAQQRLRSFLESTVSGYAADRDRPDIDATSRLSPHLRFGEITPRQIWHAARFA 196

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
             +   + K G   +L+E+ WREF RHL+   P +   +   P  +   W +D   L AW
Sbjct: 197 AEERPAQAK-GIDKFLSEIGWREFSRHLLYNNPDLA-SRNLQPSFDPFPWVQDDAALAAW 254

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           ++G TG+PI+DA +R+L   G MHNR+RM+ AS LVK LL+DWR GE++F   L+D D  
Sbjct: 255 QRGRTGYPIVDAGLRELWHTGSMHNRVRMVAASLLVKHLLIDWRQGEQWFWDTLVDADPG 314

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SN   WQW A +G D+ PYFR+FNP +QG++FD  G+++R W+PEL  +P   IH P  W
Sbjct: 315 SNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGSYVRRWVPELARLPAGVIHQP--W 372

Query: 447 LDKN--------DLSLNYPLPIVDHKKACHHTLNQY 474
             K          L  +YP PI+DHK+     L  Y
Sbjct: 373 AAKPLELAEAGVTLGRSYPTPIIDHKQGRERALAAY 408


>gi|325292582|ref|YP_004278446.1| DNA photolyase [Agrobacterium sp. H13-3]
 gi|325060435|gb|ADY64126.1| DNA photolyase [Agrobacterium sp. H13-3]
          Length = 479

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 168/496 (33%), Positives = 247/496 (49%), Gaps = 38/496 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T  S  +VW R DLR+ DN AL AA  +    VI ++I    +     +   Q  +++ S
Sbjct: 3   TKSSPVIVWFRKDLRLADNLALLAAVEHG-GPVIPIYI---RETSSGPLGGAQEWWLHHS 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  +L + G      +  N ++++  L     +     + +NR+YE   +  DK ++
Sbjct: 59  LASLSAALEKCGSRLLL-RSGNAEETLRRL---IAETGADAVLWNRRYEPTGMATDKAIK 114

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    +  +SF   +L  P  +   +   Y+VYTPF +AL      ++    P  A +
Sbjct: 115 EALGDDGLTVRSFAGHLLHEPSRVQTKSGGPYRVYTPFWRAL----EGSEEPHTPADAPQ 170

Query: 184 -LTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQR 234
            L  P T S   +  D+    + P        ++  GE  A   L  F    +  Y E R
Sbjct: 171 SLKAPETWSKSEKLDDWKLLPVKPDWAKDFSEIWTPGENAAREKLDDFIDGALKGYEEGR 230

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D PA   TS L+P+L++G +SP   W+  K     +     S    +  EL+WREF  HL
Sbjct: 231 DFPAKDATSLLAPHLALGEISPAAVWHATKGLSRHIASNDIS---RFRKELVWREFCYHL 287

Query: 295 MAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +  +P +        W +      W  D     AW +G TG+PI+DA MRQL   G MHN
Sbjct: 288 LFHFPELDEKN----WNDSFGAFGWRDDDTSFNAWTRGMTGYPIVDAGMRQLWKHGTMHN 343

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMI ASFL+K LL+DWR GE++F   L+D D ASN   WQW A +G D+ P+FRIFNP
Sbjct: 344 RVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNP 403

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKK 465
            +QG++FD +G ++R ++PEL  +  +YIH    AP   L K  + L   YPLPIVDH K
Sbjct: 404 ILQGEKFDAEGDYVRRFVPELERLERKYIHKPFEAPKEVLKKAGIELGKTYPLPIVDHGK 463

Query: 466 ACHHTLNQYYAAKKQS 481
           A    L  Y   K  +
Sbjct: 464 ARERALAAYAEVKNNA 479


>gi|299821147|ref|ZP_07053035.1| deoxyribodipyrimidine photo-lyase [Listeria grayi DSM 20601]
 gi|299816812|gb|EFI84048.1| deoxyribodipyrimidine photo-lyase [Listeria grayi DSM 20601]
          Length = 457

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 243/477 (50%), Gaps = 50/477 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L  L N +  T +  L++    + +K+ A +   P +    G S R+  F + ++ Q 
Sbjct: 1   MQLGVLLNRVFRTKHNPLFSYVEQNRSKIDACYFIIPLE-DLKGASERKKAFYFGTVNQF 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVRRD 120
              L++       ++   F  + E L  +C +Q++  +        ++  +Y+I   +R+
Sbjct: 60  LTELAK-------YEIRPFLVTYEKLPEFCQKQKIDTILMAGDIMSYHQEEYDIRH-QRE 111

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA-----LIQNLVQADLR 175
           KL    L+     K+        P +   +  + YKV+TPF KA      IQ      L+
Sbjct: 112 KLTAAGLE----IKTIRVQHYFHPRATFKNGDEPYKVFTPFYKANRPHVTIQKPAAYSLK 167

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            L    +  TG +  S       YP   +       E+ A+   + F  E +  Y   R+
Sbjct: 168 QLSEITVTGTGHLDHS-------YPDDGL------SEEQAVANWQTFLNESIEAYETNRE 214

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           + A   TS LS YL+ G++  +Q +N+L    +D     +    +++ EL++REFY  LM
Sbjct: 215 VLAEIKTSWLSVYLAYGLIDIQQIFNQL----LDQREANEKNYEAFIRELLFREFYYVLM 270

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP +   + F P   +IEW+ +    + WK G TG+PI+DAAM++LN  G+MHNR+RM
Sbjct: 271 VTYPEMAT-QSFKPNYRQIEWSLNKANFERWKNGETGYPIVDAAMQELNQTGYMHNRMRM 329

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + + FL KDL +DWR GE+YF SQL+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q 
Sbjct: 330 VVSQFLTKDLFIDWRWGEDYFRSQLIDYDNASNVNGWQWSASTGTDAVPYFRMFNPIRQS 389

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
           +RFD  G +I+ +LP    VP  Y+H       K       +L   YP PIVDHK++
Sbjct: 390 ERFDQDGAYIKQYLPIFKAVPAAYLHDTEKNKAKLAAECDIELGKTYPAPIVDHKQS 446


>gi|157737085|ref|YP_001489768.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018]
 gi|157698939|gb|ABV67099.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018]
          Length = 450

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 156/460 (33%), Positives = 244/460 (53%), Gaps = 41/460 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R DLRI DN+ L     N+  +V+ +FI      +      ++  FIY S+ +++
Sbjct: 3   QILWFRRDLRIIDNEIL----ANAKGEVLPIFIFDKNILQNLPKDDKRVTFIYKSVYKLK 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L   G+       + F D+ + + +   ++   ++  +  ++    +RD+ +EK +  
Sbjct: 59  EDLKSIGL-----DLAIFFDTPKNVFTKLKKENFDEILVSVDFDNYAKKRDEEVEKIIPL 113

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           R     F DS L+ P  IL    + YKV+TPF   L + L Q++          +    T
Sbjct: 114 R----RFLDSYLIDPKIILKSDQKPYKVFTPFYNYL-EPLHQSN---------HIEEFKT 159

Query: 190 PSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKE-------KVYYYVEQRDIPAIQG 241
            +NI +  FDY F          EQ     L K   E       K+  Y + RD   +  
Sbjct: 160 ATNIKKINFDYDFFPTLQDLGFIEQKLPDFLYKSADELITIFSKKINNYQKNRDFFHLDA 219

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS +L  G++S +  +N++K+     L  PK     ++ ELIWREFY +++  +P  
Sbjct: 220 GSNLSVHLRFGLISAKMVFNKIKK-----LQAPKKEIDFFIRELIWREFYNYILFHFPKS 274

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +   E + WN++    + W +G TG PIIDA+M+ LN  G MHNRLRMI AS+L
Sbjct: 275 QFEN--LNGIE-VNWNENEEDFKKWCEGNTGVPIIDASMKHLNNTGLMHNRLRMIVASYL 331

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK+LL+DW+ GEEYF  +LLD + +SN G WQWAASTG D+VPYFR+FNP +Q K+FD +
Sbjct: 332 VKNLLIDWKKGEEYFALKLLDYEASSNIGSWQWAASTGVDAVPYFRVFNPYLQSKKFDSE 391

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
             FI+  L +L ++PT+ IH  +    + ++ L+YP  IV
Sbjct: 392 AIFIKSVLKDLKDIPTKQIHTENGI--QENIFLDYPKQIV 429


>gi|111021970|ref|YP_704942.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1]
 gi|110821500|gb|ABG96784.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1]
          Length = 446

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 150/477 (31%), Positives = 230/477 (48%), Gaps = 46/477 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R DLR+ D   L+     S A+ + +F+         G + R   F++ SL 
Sbjct: 1   MDTALVWFRRDLRLGDLPTLHTVS-ESGARALGLFVLDDRLLTTSGGARRD--FLFRSLA 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  + +V +        D ++ +     +    ++  +  Y      RD  + + 
Sbjct: 58  ALDDQLDGRLLVVK-------GDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDAAVAEH 110

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +        +     + PG +     + Y+V+TP+ +  +++  +A +          TG
Sbjct: 111 VDLVATGSPY----AVAPGRVTKTDGEPYRVFTPYFRQWLEHGWRAPID---------TG 157

Query: 187 PVT-----PSNI-PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             T     P+++  R    P    D   P GE  AL    +FC + +  Y + RD P + 
Sbjct: 158 SATVEWLDPNDVKARRVAIPEPESDGC-PAGEAAALQRWAEFCDDDLAGYEDARDRPGLD 216

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS++S YL  G + PR           DL  +  + A  +  +L WR+FY  ++   P 
Sbjct: 217 ATSRMSVYLKYGNIHPRTM-------LRDLARRRSTSAEQYRRQLAWRDFYADILFQRPD 269

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
              G  +    + I ++  S   +A   W +G TGFPI+DA MRQL    WMHNR+RMI 
Sbjct: 270 SARGN-YDRRFDHIRYDSGSDAEEAYTAWCEGRTGFPIVDAGMRQLKAEAWMHNRVRMIV 328

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASF VKDL + W  G  YFM+QL+DGDLA+N  GWQW A +G D+ PYFR+FNPT QG++
Sbjct: 329 ASFFVKDLHLPWWRGARYFMNQLVDGDLANNQHGWQWTAGSGTDASPYFRVFNPTTQGEK 388

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           FDP G ++R W+PEL  +P + +HA      K+    +YP PIVDH       L +Y
Sbjct: 389 FDPDGEYVRRWVPELRGIPGKAVHAL-----KDGRPEDYPPPIVDHAHERQEALARY 440


>gi|121997706|ref|YP_001002493.1| deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
 gi|121589111|gb|ABM61691.1| Deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
          Length = 477

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 157/492 (31%), Positives = 237/492 (48%), Gaps = 39/492 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVWLR DLR+ D  AL  A   ++ ++  V+I  P + R   + A    +++ SL 
Sbjct: 1   MTNALVWLRRDLRLADQPALARAAQTAE-RLAPVYIHAPAETRPT-VGAASCWWLHHSLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWL---DSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            +   L+  G         + +    W    D+  +        + RQ E         +
Sbjct: 59  ALDAELASAGSRLCLDTGPSAERLCHWAQVSDAAVVYCTAIAEPWARQQEAAVAEALAAI 118

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             RL+         D +L  P ++ N +   Y+ +TPF +++   L        P     
Sbjct: 119 GVRLE------VLADGLLTDPSAVRNRSGTPYRAFTPFWRSVRAQLDPPRPAPPPALPGL 172

Query: 184 LTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                 P  +      P     + + P +  G   A   L +F       Y E+RD PA 
Sbjct: 173 PEAIPEPQPLETLGLLPRIRWDEKLAPCWQPGAAGAQQRLERFLDGAGPAYGERRDFPAQ 232

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLMAF 297
            GTS+LSP+L  G +S R  W+ +++      ++P +     ++L EL WREF  HL+  
Sbjct: 233 PGTSRLSPHLHFGEISIRAVWHAVRDA---QQMQPAAADALDTFLAELGWREFAYHLLWQ 289

Query: 298 YPSV---CMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            P +    + + F   PW E    + D  LL AW++G TG P++DA MR+L   GWMHNR
Sbjct: 290 QPELHRTPIDERFSRFPWRE----DPDGALLDAWRRGATGIPLVDAGMRELWATGWMHNR 345

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RM+  SFLVK+L + W+ GE +F   L+D DLASN+ GWQW +  G D+ PYFRIFNP 
Sbjct: 346 VRMVVGSFLVKNLRLPWQHGEAHFRDTLVDWDLASNSMGWQWVSGCGADAAPYFRIFNPV 405

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHK 464
            QG+RFDP G ++RHW+PE+  +P  +IH P  W    D        L  +YP P+VD  
Sbjct: 406 RQGERFDPDGDYVRHWVPEVAGLPKSHIHQP--WAAPADARARCGLHLGRDYPEPLVDLA 463

Query: 465 KACHHTLNQYYA 476
            +    L  ++A
Sbjct: 464 TSRKEALAAFHA 475


>gi|222479858|ref|YP_002566095.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
 gi|222452760|gb|ACM57025.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
          Length = 514

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 165/521 (31%), Positives = 234/521 (44%), Gaps = 58/521 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFI--YA 63
           + L W R DLR+ DN  L AA    D        VF+  P+    H    R    +   A
Sbjct: 1   MELFWHRRDLRVADNVGLAAATGTRDDGRGPAAPVFVFDPDVL-DHASDVRVRRLLDGLA 59

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L    +      +V +    +   +    LD+        ++ +NR Y      RD  +
Sbjct: 60  ALRDDYRDRGSDLLVARGAPETVLPELAAALDA-------ERVVWNRDYSGLARERDAGV 112

Query: 124 EKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----DLRSL 177
              L    I +    D+VL  P SI  +A   Y VY+ + K     +        D   L
Sbjct: 113 RTALNDAGIDREVLHDAVLHTPESIRTNAGDPYSVYSYYWKKWTDRVADPPAPTPDAGDL 172

Query: 178 PVPAIRLTGPVTP-----------------SNIPRFFDYPFQAIDP-MFPIGEQNALHIL 219
            V A  LT  V                    ++P   D  F   +  + P G + A   L
Sbjct: 173 -VDAGDLTAAVGTDGGAETDGGAAIDRVAVGDLPAPADLGFAEPEADVGPAGTEAARDRL 231

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------ 273
             F  E V+ Y  +RD PA + TS++S +L  G +  R+ +   K+       K      
Sbjct: 232 DDFLSEAVFSYDAERDYPAREATSRMSAFLKYGEIGVREAYEATKDAMAMAEEKTGERDE 291

Query: 274 -----------PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
                      P +    +  +L WREFY  ++   P V   + +  + E I W  D   
Sbjct: 292 GGDHEDGDDEGPVAAVEEYQKQLAWREFYTQVLYHNPEVVT-ENYKEYEEGIAWRDDPDE 350

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           + AWK+G TG+PI+DA MRQL    +MHNR+RMI ASFL KDLL DWR G +YF   L D
Sbjct: 351 IAAWKRGETGYPIVDAGMRQLREEAFMHNRVRMIVASFLTKDLLADWRHGYDYFRETLAD 410

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D A+++GGWQWAASTG D+ PYFRIFNP  QG+R+DP   +I+ ++PEL  +    IH 
Sbjct: 411 HDTANDSGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIKRYVPELRGLDADLIHE 470

Query: 443 PH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            H  S   + + + NYP PIVDH +     L  Y  A+ + 
Sbjct: 471 WHELSPTQRANAAPNYPAPIVDHSERREEALAMYKRARGED 511


>gi|254462705|ref|ZP_05076121.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2083]
 gi|206679294|gb|EDZ43781.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 473

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 164/481 (34%), Positives = 242/481 (50%), Gaps = 37/481 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR++D+ AL AAC ++   VIAVFI         G+ A     +  +L    +
Sbjct: 8   IVWFRRDLRVSDHPALSAAC-SARVPVIAVFIKDD---IVDGLGAAPKWRLGKALEVFTQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L++  I     +    D     LD+   +     ++++R Y+   V RD +++  L  +
Sbjct: 64  TLARLNIPLILREGPAGDV----LDALITETDAQGVYWSRLYDPACVTRDTVIKADLLSK 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF   ++  P ++      MYKVYTPF +++    V   L ++P       G + 
Sbjct: 120 GLEARSFGGHLMFEPWTVETKTGGMYKVYTPFWRSVKDRDVDVPL-AVPTSVQPYEGHLE 178

Query: 190 PSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            ++     D+   A        +     +GE  A   L  F +  V  YVE+RDIP+ +G
Sbjct: 179 SADQS---DWALGAAMRRGGVIVARHAQVGEAAAQARLADFIENDVSDYVERRDIPSTRG 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LS  L++G +SP QCW+      +  L + K  +  +L EL+WREF  HL    P +
Sbjct: 236 TSGLSENLALGEISPHQCWH----AGMRALHEGKDDSEVFLKELVWREFAYHLTHHTPHI 291

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                   W +K  WN+D+   +  AWKQG TG   +DAAMR++   G MHNR RMI AS
Sbjct: 292 LDSNWKSDW-DKFAWNEDADHPEVIAWKQGRTGIEFVDAAMREMYVTGKMHNRGRMIVAS 350

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           +L K LL  W++G+ +F   L D D ASN  GWQWAA +G D+ PYFR+FNP  Q  +FD
Sbjct: 351 YLTKHLLTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDASPYFRVFNPVTQLDKFD 410

Query: 420 PQGTFIRHWLPELNNVP----TQYIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQ 473
            +  + R W+ E    P    T Y  A P SW L   D+   YP PIV+  K     L+ 
Sbjct: 411 RERGYARAWIAEGQGNPPDTATSYFEAIPKSWGLRSTDI---YPKPIVEAAKGRQRALDA 467

Query: 474 Y 474
           Y
Sbjct: 468 Y 468


>gi|120436173|ref|YP_861859.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803]
 gi|117578323|emb|CAL66792.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803]
          Length = 435

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 150/478 (31%), Positives = 228/478 (47%), Gaps = 53/478 (11%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  V++ W R DLR+ DN  L AA    D  V+ +FI   E   +      +  FI+  L
Sbjct: 2   SKKVNIFWFRRDLRLDDNAGLKAALQ-GDLPVLPIFIFDHEILEKLPEDDARVTFIFEEL 60

Query: 66  LQVQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +++ +L +     I   Y              +      + K+F NR YE     RD+ 
Sbjct: 61  QEMRSTLQEDHGSSIAIFYRTPEKV------FKNLISDYEIEKVFTNRDYEPYAKERDQK 114

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           + K L    I  + F D V+     ++      Y VYTP++    +   + DL       
Sbjct: 115 IAKILSGNDIEFEDFKDQVIFEKDEVVKKDGDPYVVYTPYKNLWREKFSKIDL-DFHYTT 173

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILR-KFCKEKVYYYVEQRDIPAI 239
             +      S +P            +  IG ++++L +   K     +  Y ++RD PA+
Sbjct: 174 RYMDNFYQNSRLPNL---------SLADIGFKKSSLKVPDYKVTPGLIKDYKDKRDYPAV 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GTS+L P+L  G +S RQ      EE             ++L+EL+WREF+  ++  +P
Sbjct: 225 EGTSRLGPHLRFGTVSVRQMIRDADEE----------SNKTFLDELVWREFFMQILFHFP 274

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                + F    ++IEW  +    + WKQG TG+P++DA MRQLN  G+MHNR+RM+  S
Sbjct: 275 DTVT-EAFKKKYDRIEWRNNKDEFELWKQGKTGYPLVDAGMRQLNESGFMHNRIRMLVGS 333

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DWR GE YF  +LLD +++SN G WQW A +G D+ PYFRIFNPT Q ++FD
Sbjct: 334 FLCKHLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIEKFD 393

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
               +I+ W+PE                     + +YP  +VDHK+A    L  Y  A
Sbjct: 394 KDKEYIKEWVPEFG-------------------TDDYPEKMVDHKEARERALKTYKEA 432


>gi|154248595|ref|YP_001419553.1| deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2]
 gi|154162680|gb|ABS69896.1| Deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2]
          Length = 500

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 156/492 (31%), Positives = 236/492 (47%), Gaps = 35/492 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  L+W R+DLR++DN AL AA   +   + A+++   +      +      ++  SL  
Sbjct: 24  SPSLLWFRDDLRLSDNPAL-AALAEARTPLAALYVLDEDSPGVRPLGGAARWWLAQSLRA 82

Query: 68  VQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +   L  +G+  + +    +     +  L           + +N +    E R D  +  
Sbjct: 83  LAADLKDRGVPLILRRGPANRVVPEVAALLG------AATVAFNDRAGAAETRVDHAVAA 136

Query: 126 RL---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           RL     RV+  SF   +L PPGS+   +  M + ++ F +A ++    A     P+PA 
Sbjct: 137 RLLSEDRRVL--SFCAHLLHPPGSVEGASGGMPRTFSSFHRAALK----ARRLDTPLPAP 190

Query: 183 R-LTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
           + L G   P        +  +   P         +  GE  A   L  F    +  Y E 
Sbjct: 191 KHLDGVAHPPEGETLESFDLEPTHPDWAGGLRSAWTAGEAAAQARLAAFMDAGLAGYAEG 250

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P +   S+LSP+L  G +SPRQ  + ++    +    P   A  +  EL WREF  H
Sbjct: 251 RDRPDLNHVSRLSPHLRFGEISPRQILSAVRHA-AEAGAVPLVDADKFEAELYWREFSYH 309

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L+A  P +          +   W +    L+AW +G TG+P++DA +RQL   GWMHNR+
Sbjct: 310 LLAEMPDLARSN-IQHGFDAFPWRECPGELKAWHKGLTGYPLVDAGLRQLWQTGWMHNRV 368

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+ ASFL K LL+DWR GE++F   L+D D A+N   WQW A +G D+ PYFRIFNP  
Sbjct: 369 RMVVASFLTKHLLIDWRSGEDWFWDTLVDADGANNAASWQWVAGSGLDAAPYFRIFNPVT 428

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAP-----HSWLDKN-DLSLNYPLPIVDHKKAC 467
           QG++FDP GT++R ++PEL  +P   IH P     H+       L   YP P+VDH  A 
Sbjct: 429 QGEKFDPDGTYVRTFVPELGKLPAPLIHKPWTADAHTLAHAGIRLGHTYPRPLVDHGAAR 488

Query: 468 HHTLNQYYAAKK 479
              L  + + +K
Sbjct: 489 ERALRAFESTRK 500


>gi|254476074|ref|ZP_05089460.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
 gi|214030317|gb|EEB71152.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
          Length = 478

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 161/492 (32%), Positives = 242/492 (49%), Gaps = 53/492 (10%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W+R DLR++DN AL AA  +S A V+ VFI   +      + A     +   L  + + L
Sbjct: 14  WIRRDLRLSDNAALTAAV-DSGAPVLPVFIFDSQD---EDLGAAPRFRLGLGLEHLAQRL 69

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-V 131
            + G      + S    +++ L     +     + + R Y+     RD L+++ L+ + V
Sbjct: 70  ERLGSRLILRRGS----ALQVLQDLLKETGAQAVHWTRAYDPASRARDTLIKETLKSQGV 125

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
              S+  ++L  P ++      MY+VYTPF +A+         R   VP +     V P 
Sbjct: 126 AAHSYSGNLLFEPWTVETKTGGMYRVYTPFWRAV---------RGRDVPGLL----VAPG 172

Query: 192 NIPRFFDYP-------------FQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQR 234
            IP    +P              +   P+      +GE+ A   L +F +  +  Y + R
Sbjct: 173 TIPAPEQWPNSDQLDTWKLAAAMRRGAPVLAAHCRVGEEAAQDRLDEFIETGIARYQDLR 232

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D+PA+ GTS LS  L+ G +SP++ W+R  E     + +  +GA ++L E++WREF  HL
Sbjct: 233 DLPAVDGTSGLSENLAWGEISPQRMWHRGAEA----MAQGAAGAETFLKEVVWREFAYHL 288

Query: 295 MAFYPSVCMGKPFIPWTEKIEW--NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           M   P +        W +   W  N+D+  + AWKQG TG+  +DAAMR+L   G MHNR
Sbjct: 289 MFHTPHILTKSWREEW-QSFAWSENEDTPEVLAWKQGRTGYRFVDAAMRELYVTGKMHNR 347

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL K +L  WRIG+++F   L+D D ASN  GWQW A +G D+ P+FR+FNP 
Sbjct: 348 ARMIVASFLTKHMLTHWRIGQKWFEHCLVDWDPASNAMGWQWVAGSGPDAAPFFRVFNPD 407

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKAC 467
            Q  +FDP+G +   W+ E N  P     A     P SW    D++   P PI+D K   
Sbjct: 408 GQLDKFDPKGRYQAQWIAEGNPKPPDTARAFFTACPKSWQLSADMA--RPRPILDLKAGR 465

Query: 468 HHTLNQYYAAKK 479
              L  Y+   K
Sbjct: 466 ERALEAYHNRDK 477


>gi|121601607|ref|YP_993682.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1]
 gi|126448880|ref|YP_001081232.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247]
 gi|238562973|ref|ZP_00439583.2| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4]
 gi|254178225|ref|ZP_04884880.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399]
 gi|254199318|ref|ZP_04905684.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH]
 gi|254205631|ref|ZP_04911983.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU]
 gi|121230417|gb|ABM52935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1]
 gi|126241750|gb|ABO04843.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247]
 gi|147748914|gb|EDK55988.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH]
 gi|147753074|gb|EDK60139.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU]
 gi|160699264|gb|EDP89234.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399]
 gi|238521576|gb|EEP85026.1| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4]
          Length = 486

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 158/503 (31%), Positives = 249/503 (49%), Gaps = 42/503 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW  +DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSSISIAPAVVWFCDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     D
Sbjct: 59  LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++       R +P 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 167

Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223
           P +    RL G   P+ + R         ++P  P            GE  A   LR F 
Sbjct: 168 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 227

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+
Sbjct: 228 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 286

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL WREF    +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L
Sbjct: 287 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 345

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ 
Sbjct: 346 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 405

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455
           PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W             L   
Sbjct: 406 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 463

Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478
           YPLPIV +  A    L+ + A +
Sbjct: 464 YPLPIVAYDAARRRALDAFGAIR 486


>gi|167570597|ref|ZP_02363471.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis C6786]
          Length = 486

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 159/499 (31%), Positives = 242/499 (48%), Gaps = 34/499 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  +++  +VW R+DLR++D+ AL  A  +    + A         R  G +AR   +
Sbjct: 1   MSAVFSIAPAVVWFRDDLRVSDHPALVRAAESGRPVIGAYVFDECAGGRPLGGAARW--W 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G            D  + + S+        +++NR+Y + +   D
Sbjct: 59  LHGSLRALDAALAALGSRLVLLS----GDEADTITSFAAALGAGAVYWNRRYALAQRAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L+ R I  ++F+ S+L  PG ++  + + Y+V+T + +A ++  V A   + P 
Sbjct: 115 NTVQTALEARGIDVETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHAAPLAAPR 174

Query: 180 PAIRLTGPVTPSNIP-RFFDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKV 227
              RL G   P  +  R  +     + P  P            GE  A   LR F   ++
Sbjct: 175 ---RLKGCELPPRLAQRQVELDALGLAPARPDWAGGLRETWTCGEDAAHRRLRAFVDSRL 231

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y   RD P    TS+LSP++  G LS RQ W+   +         ++   ++  EL W
Sbjct: 232 GGYATGRDRPGAASTSRLSPFVRFGNLSVRQVWHAAVDAHAHGAAT-QADLDTFCRELGW 290

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF    +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   G
Sbjct: 291 REFCYGQLYRFPDLAR-RNLRHNLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATG 349

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNR RM+ ASFLVK LL+DWR G+ +F   L+D D ASN   WQW A  G D+ PYFR
Sbjct: 350 WMHNRARMVCASFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFR 409

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLP 459
           IFNP  QGK+FDP G ++R W+PEL  +P   IH P  W             L   YPLP
Sbjct: 410 IFNPIAQGKKFDPDGAYVRRWVPELAGLPANAIHEP--WAAPAARLAAAGVRLGDTYPLP 467

Query: 460 IVDHKKACHHTLNQYYAAK 478
           IV H  A    L+ +   +
Sbjct: 468 IVAHDAARKRALDAWVTVR 486


>gi|296392873|ref|YP_003657757.1| deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985]
 gi|296180020|gb|ADG96926.1| Deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985]
          Length = 444

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 152/475 (32%), Positives = 229/475 (48%), Gaps = 41/475 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ D   L         + + +F+  P   R  G +  +  +++++L  + +
Sbjct: 6   LCWFRRDLRLADQPMLLEVAK----EAVGLFVLDPRLTRGSGQA--RLDYLFSALAALDE 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L  + +V +        D    L+   +  R T+ F       +      L  +  + R
Sbjct: 60  TLGGRLVVAEGDPARVVPDVARELNVGAV--RCTEDFAPYGRARDAAVAAALKAQGRELR 117

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                +     + PG + N +   Y+V+TPFR+A   +         P PA   TG  + 
Sbjct: 118 PAGSPY----AISPGRVRNGSGNPYRVFTPFRRAWSAH-------GWPRPA--QTGADST 164

Query: 191 SNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             +        +   P      GEQ A      F +  +  Y + RD PA+ GTS+LS +
Sbjct: 165 RWLAAEVSCQTELPSPRLVREAGEQAAAARWTAFLEGALAGYAQNRDFPAVDGTSRLSAH 224

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC---MGK 305
           L  G L PR     L++             F  + EL WR+FY  +++ +P      + +
Sbjct: 225 LKFGALHPRTL---LRDIAAADADDTDKDVF--VTELAWRDFYADVLSHHPRTAWHNVDR 279

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    ++  W+       AW++G TG+PI+DA MRQL   GWMHNR+RMITASFL KDL
Sbjct: 280 RF----DRFAWSDSQEHFAAWQRGETGYPIVDAGMRQLAAEGWMHNRVRMITASFLTKDL 335

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W+ G  +F+  L+DGDLASN+ GWQW A TG D+ PYFR+FNPT QGK+FDP G +I
Sbjct: 336 HLPWQWGARHFIRLLVDGDLASNSHGWQWTAGTGTDAAPYFRVFNPTAQGKKFDPGGEYI 395

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           + W+P+L ++P    H P      N     YP PIVDH +     L +Y A K +
Sbjct: 396 QRWVPQLRDMPGPKAHEP------NPRPAGYPPPIVDHAQERAEALLRYEAVKGR 444


>gi|254586765|ref|XP_002498950.1| ZYRO0G22418p [Zygosaccharomyces rouxii]
 gi|238941844|emb|CAR30017.1| ZYRO0G22418p [Zygosaccharomyces rouxii]
          Length = 557

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 156/485 (32%), Positives = 243/485 (50%), Gaps = 32/485 (6%)

Query: 13  WLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W RNDLRI DN   Y A   S    A+++ +F      W  H  S  +   +Y SL  + 
Sbjct: 76  WFRNDLRIHDNTGFYTAVEESQRLGARILTIFTINQNDWIAHLDSNPKLTLMYQSLKSLH 135

Query: 70  KSLSQKGI-----VFQYHQ--CSNFDDSIEWLDSYCLQ--QRVTKLFYNRQYEINEVRRD 120
             LS+ GI     VF   +   SN    + WL   CL+       L  N +Y  +E+ RD
Sbjct: 136 GKLSELGIPLYTLVFDSGEPKLSNSMQFVIWLRDQCLKISNGAIYLTANAEYLADELYRD 195

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             +      +     F D+ ++ PG +  +    Y V++P+ K     ++     +  + 
Sbjct: 196 IRVFAVSDEKFQFNVFHDTCIVEPGVLKTNQDSPYTVFSPWYKKWCLRVMDGKSSTNLIE 255

Query: 181 AIRLTGPVTPSN---IPRFFDY----PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            + L   +   +   + + F Y     F +   +    E  A   L  F ++ V  Y++ 
Sbjct: 256 PLVLEKRIYNDDEEFVHKEFSYYLPSQFLSSTTIPDASEDAAWSRLTTFLQKNVGNYLD- 314

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNR----LKEEFVDLLIKPKSGAFSWLNELIWRE 289
           +D    + +S LSPYL++G+LS R   N     +    V    K  +    ++ E+ WR+
Sbjct: 315 KDTLLTEASSHLSPYLALGILSARCVVNEAFRLVGSRLVGKSPKDMTPVEQFIREVAWRD 374

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FY+ ++ F+P + M  PF   + +I+W+ +    Q W  G TGFPI+DA MR+L+  G++
Sbjct: 375 FYKDVICFWPYLSMDIPFNLSSLEIKWDNNFSNFQKWCLGKTGFPIVDAIMRKLSQDGYI 434

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +NR RMITASFL K+LL+DWR GE++F   L+D DLASN GGW + +STG D+ PYFR+F
Sbjct: 435 NNRARMITASFLSKNLLIDWRWGEKWFRKHLIDCDLASNVGGWGFVSSTGADAQPYFRVF 494

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
           N   Q + FDP G FI+ W+PEL N  ++ +H+    ++      +YP PI D K +   
Sbjct: 495 NMERQSRAFDPNGEFIKKWVPELKN--SKNVHSSIQEVE------SYPNPITDSKSSRQR 546

Query: 470 TLNQY 474
            L  Y
Sbjct: 547 ALEIY 551


>gi|108799005|ref|YP_639202.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS]
 gi|119868120|ref|YP_938072.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS]
 gi|126434608|ref|YP_001070299.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS]
 gi|108769424|gb|ABG08146.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS]
 gi|119694209|gb|ABL91282.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS]
 gi|126234408|gb|ABN97808.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS]
          Length = 445

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 152/470 (32%), Positives = 231/470 (49%), Gaps = 38/470 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ D  AL  A    D +V+A ++  P   R  G   R+  +++ +L  ++ 
Sbjct: 4   LLWFRRDLRLHDLPALVDAAQG-DGQVLACYVLDPRLHRSAG--PRRLQYLHDALRDLRD 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  + +V +           + +D+       + ++ +  +     RRD  + K L   
Sbjct: 61  QLDGRLLVTRGRPEQRIPALAKSIDA-------SAVYVSGDFTPFGRRRDDAVRKALGE- 112

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V  +      L+ PG +       YKV++PF  A  ++  +A  +S P  A  +  P   
Sbjct: 113 VPLQPSGSPYLVSPGRVTKGDGTPYKVFSPFFDAWRRHGWRAPAQSGPDSATWID-PADL 171

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +      + P        P GE+ A    R F  +++  Y + R+ P +  TS++S +L 
Sbjct: 172 TGRDLRTEIPDDGATLDIPAGERAAAQHWRAFVADELDGYADNRNRPDLDVTSRMSAHLK 231

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G + PR          VD L + K GA ++L EL +R+FY  ++  +P       +  W
Sbjct: 232 FGTIHPRT--------MVDDLGRGK-GAQAYLRELAFRDFYAAVLHEWPRSV----WWNW 278

Query: 311 TEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                     E         AWK+G TGFPI+DA MRQL  IGWMHNR+RMI ASFLVKD
Sbjct: 279 NTGFDGIRVDEGAVAEQRFDAWKRGRTGFPIVDAGMRQLAGIGWMHNRVRMIVASFLVKD 338

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G  +F+ QL+DGD+A+N  GWQW A  G D+ P+FR+FNP+ QG +FDP GT+
Sbjct: 339 LHLPWQWGARWFLEQLVDGDMANNQHGWQWTAGCGTDAAPFFRVFNPSTQGAKFDPDGTY 398

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +R W+PEL  V   +          +D   +YP PIVDH       L +Y
Sbjct: 399 VRRWVPELKGVADVHKMG-------DDRPADYPAPIVDHAAERAEALRRY 441


>gi|315636258|ref|ZP_07891510.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22]
 gi|315479467|gb|EFU70148.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22]
          Length = 450

 Score =  236 bits (602), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 242/459 (52%), Gaps = 39/459 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R DLRI DN+ L     N+  +V+ +FI      +      ++  FIY S+ +++
Sbjct: 3   QILWFRRDLRIIDNEIL----ANAKGEVLPIFIFDKNILQNLPKDDKRVTFIYKSVYKLK 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L   G+       + F D+ + + +   ++   ++  +  ++    +RD+ +EK +  
Sbjct: 59  EDLKSIGL-----DLAIFFDTPKNVFTKLKKENFDEILVSVDFDNYAKKRDEEVEKIIPL 113

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           R     F DS L+ P  IL    + YKV+TPF      N ++   +S  +   +++  + 
Sbjct: 114 R----RFLDSYLIDPKIILKSDQKPYKVFTPF-----YNCLEPLHQSNHIEEFKISTNIK 164

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-------KVYYYVEQRDIPAIQGT 242
             N    +DY F          EQ     L K   E       K+  Y + RD   +   
Sbjct: 165 KIN----YDYDFFPTLQDLGFIEQKLPDFLYKSADELITIFSKKIDNYQKNRDFFHLDAG 220

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS +L  G++S +  +N++K+     L  PK     ++ ELIWREFY +++  +P   
Sbjct: 221 SNLSVHLRFGLISAKIVFNKIKK-----LQAPKKEIDFFIRELIWREFYNYILFHFPKSQ 275

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                     K+ WN++    + W +G TG PIIDA+M+ LN  G MHNRLRMI AS+LV
Sbjct: 276 FENL---NGIKVNWNENEEDFKKWCEGNTGVPIIDASMKHLNNTGLMHNRLRMIVASYLV 332

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+LL+DW+ GEEYF  +LLD + +SN G WQWAASTG D+VPYFR+FNP +Q K+FD + 
Sbjct: 333 KNLLIDWKKGEEYFALKLLDYEASSNIGSWQWAASTGVDAVPYFRVFNPYLQSKKFDSEA 392

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
            FI+  L +L ++PT+ IH  +    + ++ L+YP  IV
Sbjct: 393 IFIKSVLKDLKDIPTKQIHTENGV--QENIFLDYPKQIV 429


>gi|326384210|ref|ZP_08205892.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197075|gb|EGD54267.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 480

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 162/502 (32%), Positives = 237/502 (47%), Gaps = 62/502 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR++D  +L AA   +++  +AVF+      R  G  A ++ F+   L  
Sbjct: 3   SPAIVWFRRDLRLSDLPSLSAAADRAES-ALAVFVLDDALVRPSG--APRTTFLAGCLEA 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L  + +V          D ++ +        V  +  +  +      RD+ +E  L
Sbjct: 60  LDADLGGRLLVVS-------GDPVQVIPELVDVLSVDSVHVSEDFGPYGRARDEAVEAAL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V          + PG +   A   Y+V+TPF++A + +   +       PA  LTGP
Sbjct: 113 PASVPLIRTGSPYAVSPGRVRTKAGGPYRVFTPFKRAWLDHGWHS-------PA--LTGP 163

Query: 188 VT-----PSNI---PRFFDYPFQAIDPMF----------PI-GEQNALHILRKF---CKE 225
            T     P +I    R       A+  +           P+ GE+ AL   R F      
Sbjct: 164 DTVDWLDPDSILPRGRIERVGRAAVAELLTEEASDAAALPVAGEKAALERWRAFRDGGTS 223

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           ++  Y + R+ P +  TS+LSPYL  G L PR   +       DL  +   GA +  +EL
Sbjct: 224 ELDRYADDRNRPDLDATSRLSPYLKFGCLHPRTILH-------DLRARTDDGATTLRSEL 276

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQ 342
            WR+FY  ++   P          + +++E++          AW +G TG+PI+DA MRQ
Sbjct: 277 AWRDFYADVLFHRPETARTGVDAKF-DQMEYDSGPDADAAFDAWCRGRTGYPIVDAGMRQ 335

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GWMHNR+RMI ASFL KDL + W  G  YFM+ L+DGDLASN  GWQW A  G D+
Sbjct: 336 LLAEGWMHNRVRMIVASFLTKDLHLPWWRGARYFMTHLVDGDLASNQHGWQWTAGCGTDA 395

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----------HSWLDKNDL 452
            PYFR+FNP  QG+RFDP G ++R W+PEL  +  + +H P           +  D  D 
Sbjct: 396 APYFRVFNPVSQGERFDPSGDYVRRWVPELRGIAGKAVHRPWKHAGGRTAEPALFDGTDG 455

Query: 453 SLNYPLPIVDHKKACHHTLNQY 474
              YP PIVDH +     L +Y
Sbjct: 456 DRGYPPPIVDHAEERVVALARY 477


>gi|329115122|ref|ZP_08243877.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
 gi|326695565|gb|EGE47251.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
          Length = 522

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 165/475 (34%), Positives = 235/475 (49%), Gaps = 48/475 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LV LR+D R+ DN AL+AAC      V+  ++   +   Q   + R + +  A+  Q+  
Sbjct: 60  LVLLRDDYRVADNPALHAACATGQ-PVLCAYVQ--DAALQDAPTTRIAGWAQAACAQLAT 116

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV--TKLFYNRQYEINEVRRDKLLEKRLQ 128
           SL ++G      Q          L    L Q +  T +F+NR+Y+   +  D  +   L+
Sbjct: 117 SLHKQG------QTLLMLSGPTRLSVPALAQAINATDVFWNRRYDAPGIAADTDVHASLK 170

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------------IQNLVQAD 173
            + V   S    +L  P +I   A Q Y+V+T + +A               +       
Sbjct: 171 KQGVTVHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRAARDLPEPPPPLPAPDMHGKSYVP 230

Query: 174 LRSLPVP-AIRLT--GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
            R+L +P  +RL   G   P  +P +              GEQ A   L +F +  +  Y
Sbjct: 231 ARALNLPEGVRLARVGTQMPPALPGWTS------------GEQCAHTNLHRFIENALEDY 278

Query: 231 VEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
             QRD   A  GTS LSPY+ +G +S RQ W+ ++     L  +  + A  +L EL WR+
Sbjct: 279 ETQRDRTDATHGTSLLSPYIRVGQISVRQIWHAIRHA-AHLHPQLATDAEKFLAELGWRD 337

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F    M   P +   +        + W  D+  L AW+QG TGFP++DA MRQL   GWM
Sbjct: 338 FAWMQMFTTPDLAT-RNLRAEFNHMPWRTDATDLAAWQQGQTGFPLVDAGMRQLARTGWM 396

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM+ ASFL K LL DW+ GE +F + LLD D A N   WQW A TG D+ P+FRIF
Sbjct: 397 HNRVRMVVASFLTKHLLTDWQKGERWFYAHLLDADAAVNAMNWQWGAGTGIDAAPWFRIF 456

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           NP  Q +++DP G +IR W+PEL  +  + IH P  W  K+   LNYP PIVD K
Sbjct: 457 NPVGQSEKYDPLGQYIRTWVPELAALDNKTIHTP--W--KSAQRLNYPPPIVDLK 507


>gi|226364473|ref|YP_002782255.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4]
 gi|226242962|dbj|BAH53310.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4]
          Length = 446

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 149/477 (31%), Positives = 229/477 (48%), Gaps = 46/477 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R DLR+ D   L+     S A+ + +F+      +  G + R   F++ SL 
Sbjct: 1   MDTALVWFRRDLRLGDLPTLHTVA-ESGARALGLFVLDDRLLKTSGGARRD--FLFRSLA 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL  + +V +        D ++ +     +    ++  +  Y      RD  + + 
Sbjct: 58  ALDDSLDGRLLVVK-------GDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDAAVAEH 110

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +        +     + PG +     + Y+V+TP+ +  +++  +A +          TG
Sbjct: 111 VDLVATGSPY----AVAPGRVTKTDGEPYRVFTPYFRQWLEHGWRAPID---------TG 157

Query: 187 PVT-----PSNI-PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           P T     P ++  R    P    D  +  GE  AL    +FC++ +  Y + RD P + 
Sbjct: 158 PDTVEWMDPDDVKTRRVTIPEPESD-GYAAGEAAALERWAEFCEDDLAGYEDARDRPGLD 216

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS++S YL  G + PR           DL  +    A  +  +L WR+FY  ++   P 
Sbjct: 217 ATSRMSVYLKYGNIHPRTM-------LRDLARRRSKSAEQYRRQLAWRDFYADILFQRPD 269

Query: 301 VCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
              G  +    + I ++          AW +G TGFPI+DA MRQL    WMHNR+RMI 
Sbjct: 270 SARGN-YDRRFDHIRYDSGPDAEDAYTAWCEGRTGFPIVDAGMRQLKAENWMHNRVRMIV 328

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASF VKDL + W  G  YFM+QL+DGDLA+N  GWQW A +G D+ PYFR+FNPT QG++
Sbjct: 329 ASFFVKDLHLPWWRGARYFMNQLVDGDLANNQHGWQWTAGSGTDASPYFRVFNPTTQGEK 388

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           FDP G ++R W+PEL  +  + +HA      K+    +YP PIVDH       L +Y
Sbjct: 389 FDPDGEYVRRWVPELRGISGKAVHAL-----KDGRPEDYPPPIVDHAHERQEALARY 440


>gi|120403248|ref|YP_953077.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vanbaalenii PYR-1]
 gi|119956066|gb|ABM13071.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium vanbaalenii
           PYR-1]
          Length = 442

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 162/472 (34%), Positives = 234/472 (49%), Gaps = 38/472 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ D  AL AA    D +V+A ++  P      G   R+  ++Y +L  ++ 
Sbjct: 1   MLWFRRDLRLADLPALLAASEG-DGEVLACYVLDPRLKSSSG--PRRLQYLYDALRDLRD 57

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L  + +V   H        ++ +         T +  +  +     RRD  +   L   
Sbjct: 58  NLDGRLLVTHGH-------PVQRIPLLAKAVGATSVHVSEDFTPFGRRRDDQVRDALGG- 109

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V   +     L+ PG +       YKV+TPF  A   +  +    S P  A R   P   
Sbjct: 110 VELVATGSPYLVSPGRVTKADGTPYKVFTPFFAAWRTHGWRPPAGSGPASA-RWIDPDDV 168

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           +  P   D P   +    P GE  AL    +F ++ +  Y E R+ P +  TS++S +L 
Sbjct: 169 TGGPAAADIPDTGLQLELPAGETAALRAWTRFTRDGLADYDEDRNRPDLAATSRMSAHLK 228

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G + PR     L             GA ++L EL +R+FY  ++A +P       +  W
Sbjct: 229 FGAIHPRTMAADLGR---------GEGAQAYLRELAFRDFYASVLAEWPDSA----WWNW 275

Query: 311 T---EKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               + IE + D        AWKQG TGFPI+DA MRQL   G+MHNR+RMITASFLVKD
Sbjct: 276 NTAFDAIEVDDDGDAQKSFAAWKQGRTGFPIVDAGMRQLAETGFMHNRVRMITASFLVKD 335

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G  +F+ QL+DGD+A+N  GWQWAA  G D+ PYFR+FNP+ QGK+FDP G +
Sbjct: 336 LHLPWQWGARWFLEQLVDGDIANNQHGWQWAAGCGTDAAPYFRVFNPSTQGKKFDPSGDY 395

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +R W+PEL +V    +H     LD  D    YP PIVDH +     L +Y A
Sbjct: 396 VRRWVPELADV--DDVHK----LD-GDRPDGYPEPIVDHGQERAEALRRYRA 440


>gi|56696791|ref|YP_167152.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
 gi|56678528|gb|AAV95194.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
          Length = 481

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 167/489 (34%), Positives = 233/489 (47%), Gaps = 39/489 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + WLR DLR+ D+  L AA   S   V+ VFI          + A  +  +   L +   
Sbjct: 8   IYWLRRDLRLADHPGL-AAAAASGRPVVPVFI---HDESVAALGAAPAFRLGLGLERFGA 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      + S    +   L +   +     +++ R+Y    + RD  L+  LQ  
Sbjct: 64  TLGDMGSRLILRRGS----APAVLQALIAETGAGAVWWTREYTPQAITRDSALKTALQQA 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF  ++L  P ++   A   YKVYTPF +A+ Q  V A     P PA R+  P  
Sbjct: 120 GIEARSFGGALLFEPWTVETGAGGFYKVYTPFWRAVSQREVSA---PDPAPA-RVRPPEA 175

Query: 190 PSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                   D+   A  PM             GE  AL  L +F    +  Y   RD+PA 
Sbjct: 176 WPGSEALSDWGLGA--PMRRGAAVVATHQAPGEAAALERLDRFIATGIGQYDACRDLPAG 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS LS  LS+G + PR  W+R  E       K   GA ++L +L+WR+F  HLM   P
Sbjct: 234 DGTSTLSDALSLGEIGPRTLWHRAGEA----AHKGAQGAETFLKQLVWRDFAYHLMYHTP 289

Query: 300 SVCMGKPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            + + + + P  E   W  D       AW +G TG P++DAAMR++   G MHNR RMI 
Sbjct: 290 HL-LSENWRPGWEVFPWATDPADPGFVAWTRGRTGVPLVDAAMREMYVTGRMHNRARMIA 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+L K L+V W++G ++F   L D D A+N  GWQW A  G D+ PYFRIFNP  Q K+
Sbjct: 349 ASYLTKHLMVHWKLGMDWFADCLTDWDPAANAMGWQWVAGCGPDAAPYFRIFNPETQAKK 408

Query: 418 FDPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           FDP+G +  HW+ E    P +    Y  A P SW  + D S  YP PI+   +     L+
Sbjct: 409 FDPKGRYRNHWIAEGQAEPPRAALSYFDAVPRSWNLRPDAS--YPPPIMALDQGRRRALS 466

Query: 473 QYYAAKKQS 481
            Y +A  Q 
Sbjct: 467 AYASAFSQG 475


>gi|254525755|ref|ZP_05137807.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9202]
 gi|221537179|gb|EEE39632.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9202]
          Length = 478

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 171/478 (35%), Positives = 249/478 (52%), Gaps = 45/478 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN+AL  A   S+A + + +I   E +     +  ++ F+  SL ++  
Sbjct: 7   LFWHRKDLRIFDNQALNKAISLSNA-ITSTYIFD-ENYSHDFNANSRAWFLGNSLQELGN 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL------FYNRQYEINEVRRDKLLE 124
           +  + G              IE  D   +  ++ K+      F+N+  E  E+ RD  ++
Sbjct: 65  NWHRMGSRL----------VIEKGDPILIIPKLAKIIDAKFVFWNKSIEPYEINRDSKIK 114

Query: 125 KRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----------QNLVQA 172
           K+L+ + I   +S+D  +L+ P  I +   + Y VY PF K L           Q+ V  
Sbjct: 115 KKLKEKNIQFIESWD-HLLVEPSKIFSGNNKPYSVYGPFYKNLKSKMKFLGSYNQDKVIC 173

Query: 173 DLRS----LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-V 227
             +     L    I  +     +   +   +    I P  P GE  A  +L+ F  EK +
Sbjct: 174 QFKDIDNKLKENKIINSSDSVLNKFLKNIKFSGSNICPCRP-GEVAAETLLKNFINEKKI 232

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELI 286
           Y Y   RD+P+  GTS LS  L  G +S R+ WN       D      S +  +W  EL+
Sbjct: 233 YSYNSVRDLPSHIGTSFLSASLRFGTISIRKVWNATLNLNSDFESHENSLSIETWQKELV 292

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREFY+H +  +P +  G PF    ++  W  ++   Q W +G TG PI+DAAMRQLN+ 
Sbjct: 293 WREFYQHCLFHFPELEQG-PFRKKWDQFPWINNNEWFQHWSKGETGVPIVDAAMRQLNST 351

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR RMI ASFLVKDL+ +W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  
Sbjct: 352 GWMHNRCRMIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-L 410

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           RIFNP  Q K+FDP   +I+ W+PEL+ V  +  ++   S L+ N    NY  PIV+H
Sbjct: 411 RIFNPYTQAKKFDPICEYIKSWIPELSKVSNSDILNGEISNLENN----NYSKPIVNH 464


>gi|124383478|ref|YP_001028857.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229]
 gi|254357787|ref|ZP_04974060.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280]
 gi|124291498|gb|ABN00767.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229]
 gi|148026914|gb|EDK84935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280]
          Length = 534

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 157/503 (31%), Positives = 249/503 (49%), Gaps = 42/503 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW  +DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 49  LSSSISIAPAVVWFCDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 106

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     D
Sbjct: 107 LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 162

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++       R +P 
Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 215

Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223
           P +    RL G   P+ + R         ++P  P            GE  A   LR F 
Sbjct: 216 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 275

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+
Sbjct: 276 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 334

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL WREF    +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L
Sbjct: 335 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 393

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ 
Sbjct: 394 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 453

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455
           PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W             L   
Sbjct: 454 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 511

Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478
           YPLPIV +  A    L+ + A +
Sbjct: 512 YPLPIVAYDAARRRALDAFGAIR 534


>gi|53725670|ref|YP_102418.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344]
 gi|52429093|gb|AAU49686.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344]
          Length = 497

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 157/503 (31%), Positives = 249/503 (49%), Gaps = 42/503 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW  +DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 12  LSSSISIAPAVVWFCDDLRVSDHPALMRAA-ESGRPVIGVYVFD-ERAGGRPLGGAARWW 69

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     D
Sbjct: 70  LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 125

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++       R +P 
Sbjct: 126 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMR-------RGVPA 178

Query: 180 PAI----RLTGPVTPSNIPR-FFDYPFQAIDPMFP-----------IGEQNALHILRKFC 223
           P +    RL G   P+ + R         ++P  P            GE  A   LR F 
Sbjct: 179 PPLGAPRRLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFV 238

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+
Sbjct: 239 DSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLS 297

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL WREF    +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L
Sbjct: 298 ELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMREL 356

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ 
Sbjct: 357 WATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAA 416

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLN 455
           PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W             L   
Sbjct: 417 PYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPGAQLAAAGVRLGET 474

Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478
           YPLPIV +  A    L+ + A +
Sbjct: 475 YPLPIVAYDAARRRALDAFGAIR 497


>gi|149196503|ref|ZP_01873557.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa
           HTCC2155]
 gi|149140183|gb|EDM28582.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa
           HTCC2155]
          Length = 429

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 243/478 (50%), Gaps = 57/478 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67
           ++  W R DLR+ DN  LYAA    + KV  +FI   +  ++    +  +  FI+  + +
Sbjct: 2   INYFWFRRDLRLEDNCGLYAALEAGE-KVRPIFIFDTKILKKLTSKNDPRVSFIHQKIKE 60

Query: 68  VQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +   +  KG   ++ Y+     D    W +   LQ +   ++ NR YE   + RD  +E+
Sbjct: 61  LDHQIKAKGGSGIWVYYG----DVKETWKE--ILQSQTGDVYCNRDYEPAAIDRDHEVEQ 114

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+ H     SF D V+     +L      Y VYTP+RKA        +L+  P     +
Sbjct: 115 ILRSHGQNLHSFKDQVIFEEDEVLKKDGTPYTVYTPYRKAW-------ELKFSP----EM 163

Query: 185 TGPVTPSNIPRFFDY-PFQAIDPMFPIG--EQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             P  PS++   +D  P +AI  +  +G  E+ A    +    + +  Y   RD PA+  
Sbjct: 164 LKPF-PSDLKNNYDTSPSKAIPSLEEMGFEEKKAHEGNKNLNTQLLLNYSVDRDFPALNA 222

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LS  L  G +S R     L ++ ++L         ++L+ELIWREF+  ++  +P  
Sbjct: 223 TSLLSVQLRFGAISIRH----LAKQALNL-------DSTYLHELIWREFFMMILYHFPHS 271

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              + F     ++ W  D    + W  G TG+P++DA MR+LN  G+MHNR+RM+TASFL
Sbjct: 272 A-KQEFKEQYSRVPWRYDHEDFKRWCFGKTGYPLVDAGMRELNETGYMHNRVRMVTASFL 330

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK LL+DWR GEEYF  +L+D D+++N G WQWAA  G D+ PYFR+FNPT Q +RFD Q
Sbjct: 331 VKHLLIDWRWGEEYFARKLMDYDMSANVGNWQWAAGCGCDAAPYFRVFNPTAQKERFDKQ 390

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
             +I+ W+PE N                   ++ YP P++DHK A    +  Y  A K
Sbjct: 391 EEYIKKWIPEYN-------------------TMLYPEPMIDHKFARERAIETYKKALK 429


>gi|163746389|ref|ZP_02153747.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161380274|gb|EDQ04685.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 473

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 162/489 (33%), Positives = 232/489 (47%), Gaps = 53/489 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR++D+ AL AAC      VI +FI   +      + A     +  +L  +  
Sbjct: 8   IVWFRRDLRLSDHPALAAACKTG-RPVIPLFIHDNQS---DALGAAPKFRLGLALACLGD 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +KG      +     D+++ L     Q     ++++R Y+   + RD  ++  L+  
Sbjct: 64  TLKEKGSRLILRRG----DALDVLRDVIEQTGAGAVYWSRLYDPAAIDRDTKVKDALKED 119

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V   SF   ++  P ++       YKV+TP+ K++    V   L              T
Sbjct: 120 GVEACSFAGHLMFEPWTVETKTGGFYKVFTPYWKSVRGRDVAEPL-------------AT 166

Query: 190 PSNIPRFFDYP-----------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
           PS I    D+P                    + P   +GE  A   L  F  + V  Y E
Sbjct: 167 PSEIRAPEDWPDSDVLDDWQMDAEMQRGRDVVRPYVRLGEAAAQARLGSFIADIVDGYDE 226

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD+P   GTS LS  LS+G +SP  CW+  +      + + K GA ++L EL WREF  
Sbjct: 227 SRDMPGEDGTSGLSENLSLGEISPAHCWHAGQR----AMQEGKRGAETFLKELAWREFAY 282

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMH 350
           HLM   P +        W +   WN+D    +  AWKQG TG P +DAAMR+L   G MH
Sbjct: 283 HLMYHTPRILDQNWREEW-QAFPWNEDERCAEVLAWKQGRTGMPFVDAAMRELQVTGRMH 341

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RMI AS+L K L+  WRIG+++F   L+D D A+N  GWQWAA +G D+ P+FRIFN
Sbjct: 342 NRGRMIVASYLTKHLMCHWRIGQKWFEEHLIDWDPANNAMGWQWAAGSGPDATPFFRIFN 401

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPT----QYIHA-PHSWLDKNDLSLNYPLPIVDHKK 465
           P  Q  RFD    + R W+ E    P+    +Y  A P  W  + D   +YP PIVD  +
Sbjct: 402 PETQLDRFDKGRNYTRRWIAEGREKPSEDALEYFDAIPRRWGRRPD--DDYPDPIVDLSE 459

Query: 466 ACHHTLNQY 474
                L+ Y
Sbjct: 460 GRARALDAY 468


>gi|305666673|ref|YP_003862960.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
 gi|88707478|gb|EAQ99722.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
          Length = 436

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 153/475 (32%), Positives = 234/475 (49%), Gaps = 51/475 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + + W R DLR+ DN  L  A       V+ +FI   E   Q   +  + +FIY ++  +
Sbjct: 5   ISVFWFRRDLRLEDNTGLLKALQ-GPTPVLPIFIFDTEILCQVPKNDARVNFIYNTIETL 63

Query: 69  QKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
             ++ +K    +  +H        IE  ++   +  +  +F N  YE + ++RD  +++ 
Sbjct: 64  NTNIKKKHKSSIAIFH-----GKPIEIFNTLIKKHTIDAVFANHDYEPHALKRDTAIKEL 118

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L +  I   ++ D V+     I+      Y VYTP++    +N             +   
Sbjct: 119 LANNSISFHTYKDQVIFEKNEIIKSDKSPYVVYTPYKNKWKENFDPKIHLKNSSNCLESN 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIP-AIQGT 242
             V  +N+P FF+        +  IG +++   + +F     +   Y   R+ P A  GT
Sbjct: 179 NFVNNTNLP-FFE--------LRDIGFESSSITVPEFIITITFIEGYETTRNYPGATNGT 229

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S++ P+L  G +S R+         V   I   +  F W NELIWREF+  ++  +P+  
Sbjct: 230 SKIGPHLRFGTVSIRKI--------VKHAINSDNKVF-W-NELIWREFFMQILWHFPN-T 278

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           +   F P  ++IEW  +    + WK G TG+P++DA MR+LN  G+MHNR+RM+TASFL 
Sbjct: 279 VNNAFRPKYDRIEWRNNEAEFEKWKTGQTGYPLVDAGMRELNATGFMHNRVRMLTASFLC 338

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE YF  +LLD DL++N G WQWAA +G D+ PYFRIFNP+ Q  +FD Q 
Sbjct: 339 KHLLIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPSTQIDKFDKQK 398

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           T++  W+PEL                      NYP  IVDHK A    L  Y  A
Sbjct: 399 TYVNQWVPELQ-------------------EFNYPTQIVDHKFARERCLKVYKEA 434


>gi|295134157|ref|YP_003584833.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
 gi|294982172|gb|ADF52637.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
          Length = 437

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 154/474 (32%), Positives = 232/474 (48%), Gaps = 51/474 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++ W R DLR+ DN    A+    +  V+ +FI  PE          +  FI+ +L  +
Sbjct: 6   INIFWFRRDLRLDDNVGFLASL-KEEHPVMPIFIFDPEILDNLPEDDARVTFIFETLQDM 64

Query: 69  QKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  L +     +  YH     +   E L +Y L     K+F NR YE     RD+ ++K 
Sbjct: 65  RNELQENHHSSIGMYHGKPE-EVFKELLKNYSL----GKVFTNRDYEPYAKDRDEKIQKL 119

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L ++ V  ++F D V+     ++      Y VYTP+ K  +++   +DL+ +   +  L 
Sbjct: 120 LDENNVKFETFKDQVIFEKDEVVKGDGDPYVVYTPYMKTWMEHFKNSDLK-IHYTSQFLD 178

Query: 186 GPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             V  + +P     D  F+      P  +     I R         Y + R+IP+ +GTS
Sbjct: 179 NLVQNTRLPNLSLSDIGFKKSSLKVPDFDTTPSLIQR---------YEDTRNIPSKEGTS 229

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +L P+L  G +S R+   +   E        K+  F  L EL+WREF+  ++   PS   
Sbjct: 230 RLGPHLRFGTVSVRKMVKKANNE--------KNKTF--LQELVWREFFMQVLYHNPSTVT 279

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    + I+W  +    + WK G TGFP++DA MRQLN  G+MHNR+RM+  SFL K
Sbjct: 280 D-AFKKKYDNIQWRNNKEEFEKWKNGKTGFPLVDAGMRQLNKSGFMHNRVRMLVGSFLCK 338

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF  +LLD +++SN G WQW A +G D+VPYFRIFNPT Q  +FD    
Sbjct: 339 HLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAVPYFRIFNPTTQIDKFDKDKK 398

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ W+ E                     S +YP  +VDHK+A    L+ Y  A
Sbjct: 399 YIKEWVEEFG-------------------SDDYPDKMVDHKEARERALSTYKEA 433


>gi|167628126|ref|YP_001678626.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167598127|gb|ABZ88125.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 464

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 163/487 (33%), Positives = 248/487 (50%), Gaps = 56/487 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           +++H  W R DLR+ DN AL+ A    +   I +FI    Q     I      +++ SL 
Sbjct: 5   IAIH--WFRQDLRLADNPALHQASQADE--TITIFILDENQ----EIGGASKLWLHHSLS 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+ K   F         + +E +     +  +T  ++NR Y+   + RD  +++ 
Sbjct: 57  SLSKSLNNKLNFFS-------GNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQF 109

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSL-- 177
           LQ + I   SF+ S+L+ P          YKVYTPF K LI+      N+V+    SL  
Sbjct: 110 LQEQDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLKK 169

Query: 178 -----PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                 + +++L  P             +Q I   + IGE  +  IL +F   KV  Y  
Sbjct: 170 LETADELDSLKLLEP----------KLSWQNIIDQWQIGEDASHQILEEFLDGKVKEYKI 219

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD  +   TS+LSPYL  G +SP Q +N ++   +D +    +    ++ EL+WR+F  
Sbjct: 220 ARDFMSTDSTSKLSPYLHFGEISPNQIFNAVQS--LDYI---GNNEEHFIKELVWRDFSY 274

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           + + +YP +   K      +  EW+ D+ LL+ W+ G TG PI+DA MR+L   G+MHNR
Sbjct: 275 YQIYYYPEL-HNKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNR 333

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP 
Sbjct: 334 VRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPV 393

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDHK 464
           +Q ++F+    +IR ++PEL  +P + +  P  W   N         L  NYP P++D K
Sbjct: 394 LQAEKFEAY-EYIRKYVPELKLLPNKLLAKP--WEASNLVLQESGVKLGDNYPTPLIDLK 450

Query: 465 KACHHTL 471
           K+    L
Sbjct: 451 KSRDKAL 457


>gi|241668656|ref|ZP_04756234.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877189|ref|ZP_05249899.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843210|gb|EET21624.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 464

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 164/488 (33%), Positives = 251/488 (51%), Gaps = 58/488 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           +++H  W R DLR+ DN AL+ A    +   I +FI    Q     I      +++ SL 
Sbjct: 5   IAIH--WFRQDLRLADNPALHQASQADE--TITIFILDENQ----EIGGASKLWLHHSLS 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+ K   F         + +E +     +  +T  ++NR Y+   + RD  +++ 
Sbjct: 57  SLSKSLNNKLNFFS-------GNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQF 109

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSL-- 177
           LQ + I   SF+ S+L+ P          YKVYTPF K LI+      N+V+    SL  
Sbjct: 110 LQEQDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLKK 169

Query: 178 -----PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                 + +++L  P             +Q I   + IGE  +  IL +F   KV  Y  
Sbjct: 170 LETADELDSLKLLEP----------KLSWQNIIDQWQIGEDASHQILEEFLDGKVKEYKI 219

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD  +   TS+LSPYL  G +SP Q +N ++   +D +    +    ++ EL+WR+F  
Sbjct: 220 ARDFMSTDSTSKLSPYLHFGEISPNQIFNAVQS--LDYI---GNNEEHFIKELVWRDFSY 274

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           + + +YP +   K      +  EW+ D+ LL+ W+ G TG PI+DA MR+L   G+MHNR
Sbjct: 275 YQIYYYPEL-HNKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNR 333

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP 
Sbjct: 334 VRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPV 393

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---------NYPLPIVDH 463
           +Q ++F+    +IR ++PEL  +P + I  P  W + ++L L         NYP P++D 
Sbjct: 394 LQAEKFEAY-EYIRKYVPELKFLPNKLIAKP--W-EASELVLQEAGVKLGDNYPTPVIDL 449

Query: 464 KKACHHTL 471
           KK+    L
Sbjct: 450 KKSRDKAL 457


>gi|206560613|ref|YP_002231378.1| putative DNA photolyase [Burkholderia cenocepacia J2315]
 gi|198036655|emb|CAR52553.1| putative DNA photolyase [Burkholderia cenocepacia J2315]
          Length = 494

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 152/484 (31%), Positives = 236/484 (48%), Gaps = 31/484 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A ++++  +VW R+DLR+TD  AL  A   S   ++ VF+          +      +
Sbjct: 3   VPAQSSVAPAIVWFRDDLRVTDQPALTLAVE-SGRPLVCVFVDDTGAGAGPALGGAARWW 61

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D
Sbjct: 62  LHGSLAGLDAALARHGGRLLLLRG----DAQREIERLVRDTGAAAVYWNRRYAQPQRDAD 117

Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L+  L+ R V  +S + S+L  P  +L  +   Y+V+T           +A    LP 
Sbjct: 118 AALKTSLKARGVAVESSNGSLLNEPWEVLTGSGGPYQVFT--AYWRAARRDRAVAAPLPA 175

Query: 180 PA------------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
           P              R       +  P   D+     D      E  A   L  F    +
Sbjct: 176 PGQIVFHSWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSL 235

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y + RD P    TS+LSP+L  G +SPRQ W+ ++           + A  +L+EL W
Sbjct: 236 AGYADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADADKFLSELGW 295

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF   L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T G
Sbjct: 296 REFSYTLLYHFPTLATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTG 354

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFR
Sbjct: 355 WMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFR 414

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND--LSLNYPLP 459
           IFNP  QG++FDP G ++R W+PEL  +    IHAP  W      L+     L ++YP P
Sbjct: 415 IFNPVAQGQKFDPDGAYVRRWVPELAGLDDASIHAP--WEASPLALEAAGIRLGIDYPAP 472

Query: 460 IVDH 463
           +V+H
Sbjct: 473 LVEH 476


>gi|254577919|ref|XP_002494946.1| ZYRO0A13530p [Zygosaccharomyces rouxii]
 gi|238937835|emb|CAR26013.1| ZYRO0A13530p [Zygosaccharomyces rouxii]
          Length = 582

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 159/496 (32%), Positives = 245/496 (49%), Gaps = 32/496 (6%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQS 58
           KA       + W R DLRI+DN AL  A        +++++VF      W  H  S  + 
Sbjct: 88  KADVEAKTVIHWFREDLRISDNTALCKAIEKQQTDKSQLVSVFTINKHDWIAHLDSNFRL 147

Query: 59  HFIYASLLQVQKSLSQKGI---VFQYH----QCSNFDDSIEWLDSYCLQQRVTK---LFY 108
            F+Y +L  + K+L +  I   V +++      SN      W    CL+    K   L  
Sbjct: 148 TFLYNALKSLHKALLELSIPLYVIEFNPEEPTLSNSTTFAHWFKDQCLRLSKGKPLFLTA 207

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           N +Y  +E+ RD  +      R     F D+ ++ P          Y V++P+ K    +
Sbjct: 208 NAEYPTDELYRDIKIFGTTDERFQFNVFHDTCIVEPCIFKTQQNIQYSVFSPWYKKWCAH 267

Query: 169 LVQAD-----LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
           L+        + +  V  I+        ++       F A   +    E+ A+  LRK+ 
Sbjct: 268 LMDKKPNDSLVATSQVKKIQYNEKAFLPDLDFQLPAEFTAQGNVAEASEEAAISRLRKYL 327

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL-----KEEFVDLLIKPKSGA 278
           ++ +  Y E +DI   + +S +S YLS+GV+S R   N        ++ V    K     
Sbjct: 328 EDGIDKYPE-KDILIHESSSHMSAYLSVGVISARTVVNEAFHLVPGDKLVGKSPKDMIPM 386

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
             ++ E+ WR+FY+H M+F+P + M  PF   +E ++W  +    + W  G TG P+IDA
Sbjct: 387 EEFIREVAWRDFYKHTMSFWPYLSMDLPFNLASENMKWINEEPNFEKWCYGKTGVPVIDA 446

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            MR+L   G+++NR RMITASFL K+LL+DWR GE +F ++L+D DLASN GGW + +ST
Sbjct: 447 IMRKLLLEGYINNRARMITASFLSKNLLIDWRWGERWFRNRLIDCDLASNVGGWGFLSST 506

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           G D+ PYFR+FN   Q + FDP G FI+ W+PEL +      H  HS + K   + +YP 
Sbjct: 507 GVDAQPYFRVFNMERQSQAFDPDGEFIKRWVPELKDA-----HNVHSLVQK---AKSYPE 558

Query: 459 PIVDHKKACHHTLNQY 474
            IVD K +    L+ Y
Sbjct: 559 AIVDLKGSRQRALDTY 574


>gi|146303224|ref|YP_001190540.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
           5348]
 gi|145701474|gb|ABP94616.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
           5348]
          Length = 435

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 157/466 (33%), Positives = 236/466 (50%), Gaps = 55/466 (11%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQVQKSL 72
            R DLR+ DN  L  A    D +V+ VF+  P Q   +   SA    F+  SLL +   L
Sbjct: 7   FRRDLRLDDNTCLLRALQECD-EVVPVFVLDPRQLGDNPYKSAFALGFMVDSLLDLDMQL 65

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
                    H+ S       + +    + +V  +++N  Y    + RD  + + ++ RV 
Sbjct: 66  K--------HRSSRLHILQGYPEKVLPELKVEAIYFNEDYTPFSLNRDNAIRETMRGRV- 116

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRSLPVPAIRLTGPV 188
            KS +D +LL P        + Y V+T F    RK  ++  ++ D+R+       LT  +
Sbjct: 117 -KSCED-LLLTPKDFFVRKGKPYTVFTHFYNDARKLEVRKPMKNDMRNY------LTLDL 168

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             + + +        ++   P G Q  L  L +     + Y    R+ P ++GT++LSPY
Sbjct: 169 PGTEVLKL------EVERGIPGGRQEGLKRLER--ARNLNY--SMRNFPGVEGTTKLSPY 218

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           +  GV+SPR+ +  + EE                 +L WR+FY  L+A+Y     G  + 
Sbjct: 219 IKFGVVSPREVYWAVNEEI--------------RRQLYWRDFY-TLLAYYNPHVFGHSYK 263

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              + I W  +   L+AWKQG TG+PI+DA MR+LN  G+MHNR RMITASFLVK L VD
Sbjct: 264 REYDCIPWKWNEAHLEAWKQGKTGYPIVDAGMRELNETGFMHNRTRMITASFLVKVLHVD 323

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WRIGE YF ++L+D D + NNG WQW ASTG D +  FR+FNP +Q ++FDP   +I+ W
Sbjct: 324 WRIGERYFATKLVDYDPSVNNGNWQWVASTGADYM--FRVFNPWLQQRKFDPDAVYIKTW 381

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +PEL ++P + IH  + +         YP PIVD+ +        Y
Sbjct: 382 VPELKDLPAEKIHEIYRF-----KVSGYPSPIVDYSEEVKKARKMY 422


>gi|218516572|ref|ZP_03513412.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3]
          Length = 277

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/280 (42%), Positives = 164/280 (58%), Gaps = 16/280 (5%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           GE+ A   LR F ++++  Y E RD PA   TS LSP+L++G +SP + W+  +     L
Sbjct: 5   GEEGAQEKLRTFIEDRLDGYKENRDYPAKPATSMLSPHLALGEISPARIWDATRGLSKHL 64

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWK 327
              P +    +  E+ WR+F  HL+A +P +        W ++    EW        AW 
Sbjct: 65  ---PAADIVHFRKEIAWRDFSYHLLAHFPRLATAN----WEDRFDRFEWGSAEEDFNAWS 117

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           +G TG+PI+DA MRQL   GWMHNR+RMI ASFL+KDL+VDWR GE +F   L+D D A+
Sbjct: 118 RGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPAN 177

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----AP 443
           N   WQW A +G D+ P+FR+FNP +QG++FDP G F+R  +PEL  +  +YIH    AP
Sbjct: 178 NAASWQWVAGSGADASPFFRVFNPVLQGEKFDPDGDFVRSHVPELRKLDAKYIHRPFEAP 237

Query: 444 HSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKKQS 481
            S LD  D+ L   YP P+VDH  A    L  Y A +  +
Sbjct: 238 KSVLDAADVILGETYPEPVVDHAGARKRALAAYNAIRGAA 277


>gi|94498268|ref|ZP_01304828.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
 gi|94422270|gb|EAT07311.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
          Length = 458

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 163/481 (33%), Positives = 241/481 (50%), Gaps = 50/481 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67
           L+W R DLR++D  AL AA   S+  V+ V++    TP QW   G S     +++ SL  
Sbjct: 6   LLWFRQDLRLSDQAALIAAA--SEGPVVPVYVLDDDTPRQWVMGGAS---RWWLHHSLAS 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + ++L +KG      +  + D  ++ L   C   RV  L +   +  N    +K + K L
Sbjct: 61  LDRALREKGSRLTLRRGKSAD-VLQALAKECGAGRVHALHHYEPWWRNA---EKAVAKAL 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +C   D  +LLPPG++   +  +YK+YTPF +A+++ +  A     P     +  P
Sbjct: 117 D---LCL-HDGILLLPPGAVRTGSGGIYKIYTPFARAVMEQMPPAAPNRTPA---TIDAP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +     R  D+      P +  G        E  A   +  F  E V  Y   R++P++
Sbjct: 170 ESWPETDRLSDWGLLPTKPDWAGGFKKDWTPGEDGARANVAAFIDE-VGDYPTGRNLPSV 228

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL----M 295
           +GTS+LSP+L  G +SP   W+R+     D  I        +L ELIWR+ Y H     M
Sbjct: 229 EGTSRLSPHLHYGEVSPAYVWHRVTASNADAEI--------FLKELIWRD-YTHTQICEM 279

Query: 296 AFYPSVCMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
             Y S      F  + W +  E   D     AWK+G TG+PI+DA MRQL T GWMHNR+
Sbjct: 280 PAYGSKNARDDFDRMDWRDLREARGD---FVAWKKGRTGYPIVDAGMRQLWTTGWMHNRV 336

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL+K LL+DWR G ++F   L+D D A+N+  WQW A +G D+  + RI  P  
Sbjct: 337 RMIAASFLIKHLLIDWRHGAKWFWDTLVDADYANNSVNWQWVAGSGIDANMFSRIMAPLT 396

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q ++FD  G +IR W+PEL  +  + IH P +   + D   +YP  I+ H+      L  
Sbjct: 397 QSEKFD-AGDYIRQWVPELAALSNEVIHDPDAHDARPD---DYPAKIIGHRAGRERALAA 452

Query: 474 Y 474
           Y
Sbjct: 453 Y 453


>gi|169595114|ref|XP_001790981.1| hypothetical protein SNOG_00291 [Phaeosphaeria nodorum SN15]
 gi|160701021|gb|EAT91786.2| hypothetical protein SNOG_00291 [Phaeosphaeria nodorum SN15]
          Length = 534

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 159/495 (32%), Positives = 240/495 (48%), Gaps = 62/495 (12%)

Query: 17  DLRITDNKALYAACHNSDAK---VIAVFI--ATPEQWRQHGISARQSHFIYASLLQVQKS 71
           DLRI DN AL+ A   + +K   ++ V++  A  E W  HG S  +  F+   L  +QK 
Sbjct: 56  DLRIQDNTALHHASELAQSKKKPLVGVYVNCAADESW--HGTSPARVDFMCEGLKIMQKE 113

Query: 72  LSQKGIVFQYHQCSN----FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           L    I   + +C +        IEWL      Q+V+ +F N +YEI+E+RRD  L K++
Sbjct: 114 LKDLNIPLVFLECEDRKKIVPTVIEWLKG----QKVSHVFGNYEYEIDELRRDIKLVKQV 169

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRLT 185
              +      D  ++ PG++L  A +  KV+TP+ K  +  L +    L + P PA    
Sbjct: 170 GGGIQVSLHHDQTVIEPGTMLTGAGKPMKVFTPYHKQWLAILKEQPELLDTSPAPA---- 225

Query: 186 GPVTPSNIPR----FFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEK 226
               PS++ +     FD P                + I  ++P G   A   +  F K  
Sbjct: 226 --ANPSSMKKELKDLFDTPAPKPAADKQFSSDEEKKRIRKLWPAGHAAASKRMDAFLK-T 282

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC------WNRLKEEFVDLLIKPKSGAFS 280
           +  Y   R  PA   TS+LS Y S G+ S R        +N    +F +   +P  G + 
Sbjct: 283 IDSYAATRSNPAKDSTSRLSAYFSAGMFSVRSALQKVADYNHGSTDFTESSARP--GVYG 340

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           W+ E+++RE YR      P   M  P     + ++W  D    + W +G TG P IDA M
Sbjct: 341 WVREIVFRELYRQTTLTTPHTSMNMPQNLKFDFVQWEDDEEGWEKWYKGETGEPFIDAGM 400

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQLN   +MHNRLRM  +S+L  +LL+D+R GE YF   L+D DL++N  GW+       
Sbjct: 401 RQLNHEAYMHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE------- 453

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLP 459
              P + +FNP  Q +R DP G +IR W+PEL +V  + + AP++ L K +   L YP P
Sbjct: 454 ---PSYTVFNPVSQAERNDPDGDYIRKWVPELKDVQGKAVFAPYARLSKAEFEKLGYPKP 510

Query: 460 IVDHKKACHHTLNQY 474
            VD K+     + ++
Sbjct: 511 HVDWKQTKQRCMERF 525


>gi|289662993|ref|ZP_06484574.1| photolyase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 484

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 164/489 (33%), Positives = 241/489 (49%), Gaps = 23/489 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           ++    MS  +VW R DLR+ DN AL AA  ++    I ++I    +  +    A    +
Sbjct: 7   VRCRVCMSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDALHEEGEWTPGAASRTW 65

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
            + SL  +  +L  +G            DS + LD    Q     +++NR+YE     RD
Sbjct: 66  RHRSLAALDDALRARGSGL----VIRAGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRD 121

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---R 175
             +++ L+ R I  +S + ++L  P  +       YKV+TPF R AL Q  + A +   R
Sbjct: 122 AQIKRALRERGIEAQSCNSALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPR 181

Query: 176 SLP-VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           SLP +PA   T  +    +    ++  Q     +  GE  A  +L  F    +  Y E R
Sbjct: 182 SLPPLPAALKTDALDTLQLVSSLNWD-QGFWEHWQPGEAGAHEMLEIFIDGALSGYRENR 240

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P   GTSQLSP+L  G ++P +  + L+            G   ++ +L WR+F  +L
Sbjct: 241 DRPDRVGTSQLSPHLHFGEIAPWRIASTLEAHRTARNCAEIDG---YIRQLGWRDFAYYL 297

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +  +P     +   P  E  +W K D   L AW++G TG PI+DA MRQL   GWMHNR+
Sbjct: 298 LHHFPDTT-NQNLNPRFEGFDWAKVDPVALHAWQRGRTGIPIVDAGMRQLWHTGWMHNRV 356

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  
Sbjct: 357 RMIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVT 416

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYP-LPIVDHKKACHH 469
           Q ++FDPQ T+I  W+PEL  +  +   AP  WL    L+     YP  P++   +    
Sbjct: 417 QAEKFDPQATYITRWVPELGKLAVKERFAP--WLHPLSLARFAPEYPRTPVIGLAEGRDA 474

Query: 470 TLNQYYAAK 478
            L  Y  ++
Sbjct: 475 ALAAYAKSR 483


>gi|42523667|ref|NP_969047.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
           bacteriovorus HD100]
 gi|39575874|emb|CAE80040.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
           bacteriovorus HD100]
          Length = 435

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 157/473 (33%), Positives = 229/473 (48%), Gaps = 54/473 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLLQ 67
           V L W R DLR+ DN  LY A     A V+ +FI   E        A  +  FIY  +  
Sbjct: 4   VTLFWFRRDLRLDDNAGLYHALKERSA-VLPLFIFDSEILENLDDPADARVTFIYEQIQD 62

Query: 68  VQKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLE 124
           +++ L+ K   ++ ++ +       +E L +   +  V  ++ N  YE    +RD K+  
Sbjct: 63  MKQQLNAKKSDLIVRHGK------PLEVLKTLSDEMAVEAIYANHDYEPAARKRDEKVAA 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              +  +   +F D  L     IL  A + Y VYTP+R  ++ NL +  L+S P      
Sbjct: 117 WAAKAGIEFLTFKDQCLFEKDEILTDARKPYTVYTPYRNKVLANLSEFYLKSYPNDLYES 176

Query: 185 TGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-G 241
           +        P        F+  +  FP      + +  K  K     Y   RD PA + G
Sbjct: 177 SYAKVKKAEPLLTLKSLGFERSNIEFP-----PMDLSTKMLKT----YHATRDFPADEKG 227

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS L  +L  G LS R+           L  + K  +  WL+ELIWR+F+  ++  +P V
Sbjct: 228 TSHLGLHLRFGTLSVRE-----------LAREAKKYSPVWLSELIWRDFFMQILWHFPQV 276

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              + F P  +KI W K     Q W +G TG+P++DA MR+LN  G+MHNR+RM+ ASFL
Sbjct: 277 -ENQSFRPEYDKIAWRKSKADFQKWCEGRTGYPLVDAGMRELNATGYMHNRVRMVVASFL 335

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+ W  GE YF  +LLD DL++NNG WQWAA +G D+ PYFRIFNP  Q ++FDP 
Sbjct: 336 CKHLLIHWYEGERYFAKKLLDYDLSANNGNWQWAAGSGCDAAPYFRIFNPQTQFEKFDPD 395

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           G +++ W+PE                     +  YP P+VDH +A    L  +
Sbjct: 396 GKYVQKWVPEYG-------------------TDEYPQPMVDHNEARGRCLQAF 429


>gi|325923198|ref|ZP_08184882.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC
           19865]
 gi|325546322|gb|EGD17492.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC
           19865]
          Length = 472

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 165/481 (34%), Positives = 239/481 (49%), Gaps = 27/481 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ--HGISARQSHFIYAS 64
           MS  +VW R DLR+ DN AL AA     A  I ++I  P +  +   G ++R       +
Sbjct: 1   MSYAIVWFRRDLRLQDNPALRAALDAGHAP-IPLYIDAPHEEGEWAPGAASRSWRHRSLA 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
            L         G+V +        DS + LD    Q     +++NR+YE     RD  ++
Sbjct: 60  ALDAALRALGSGLVIRA------GDSAQVLDEMIEQTGAVAVYWNRKYEPATQPRDAQIK 113

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---RSLP- 178
           + L+ R I  +S + ++L+ P  +       YKV+TP+ R AL Q  + A +   RSLP 
Sbjct: 114 RSLRERGIEVQSCNAALLMEPWQLSTQQGGPYKVFTPYWRNALTQLQLPAAVAAPRSLPA 173

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           +PA   +  +    +    D+  Q     +  GE  A  +L  F    +  Y E RD P 
Sbjct: 174 LPATLKSAALETLGLVPKLDWD-QGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPD 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             GTSQLSP+L  G ++P +  + L+    +   +  +    ++ +L WR+F  HL+  +
Sbjct: 233 RVGTSQLSPHLHFGEIAPWRIASTLE---ANRNARNSAEIDGYIRQLGWRDFAYHLLHHF 289

Query: 299 PSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           P     +   P  E  +W K D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI 
Sbjct: 290 PDTT-NQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS L K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++
Sbjct: 349 ASLLCKHLRIHWIEGARWFWETLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEK 408

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYP-LPIVDHKKACHHTLNQ 473
           FDPQ  +I  W+PEL  +  +   AP  WL    L+     YP  PI+   +     L  
Sbjct: 409 FDPQAAYITRWVPELGKLAVKERFAP--WLSPLSLARFAPKYPRTPIIGLAEGRDAALAA 466

Query: 474 Y 474
           Y
Sbjct: 467 Y 467


>gi|284033744|ref|YP_003383675.1| deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836]
 gi|283813037|gb|ADB34876.1| Deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836]
          Length = 437

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 151/471 (32%), Positives = 226/471 (47%), Gaps = 44/471 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN AL  A    D +V  VF+  P  W   G   R       SL  +  
Sbjct: 4   VMWFRRDLRLADNPALLDAVAAGDGRVAGVFVLDPALWDAAGDPRRAQLLS--SLRSLSA 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           ++  K +V +        D    +     +     +     Y    VRRD+ +E  L   
Sbjct: 62  AMDGKLVVRR-------GDPATVIPELAAELGAASVHVTTDYGPYGVRRDQAVENALSCP 114

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           ++      +V   PG ILN   + Y+V+TP+ +A +++                 G   P
Sbjct: 115 LVATGSPYAVA--PGRILNGQGRSYQVFTPYFRAWLEH-----------------GWRQP 155

Query: 191 SNIPRFFDYPFQAIDPMFPIG--EQNALHILRKFCKE---KVYYYVEQRDIPAIQGTSQL 245
           +  P   ++     D +   G  E       R+   +    V  Y ++R+ P +  TS++
Sbjct: 156 AEAPATIEWIAARGDALPAAGTIEGAGEVAAREHWTQWLASVGQYDDERNRPDLDSTSRM 215

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L  G + PR           DL   P +GA ++  EL WR+F   L+A YP     K
Sbjct: 216 SVPLKYGEIHPRTM-------LTDLARHPGAGADAYRRELAWRDFCADLLARYPQAAW-K 267

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P  P  E++ +++      AW +G TG+PI+DA MRQL   G++HNR+RM+ ASFLVKDL
Sbjct: 268 PLRPEFERMVYDEPGDAFTAWCEGRTGYPIVDAGMRQLAASGFVHNRIRMVVASFLVKDL 327

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            V W+ G  +FM++L DGDLASN+  WQW A  G D  PY+R+FNP  QG +FDP G+++
Sbjct: 328 HVHWKYGARWFMARLRDGDLASNSLNWQWVAGCGADPSPYYRVFNPITQGLKFDPDGSYV 387

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           R W+PEL ++P + +H P                IVDH +A   +L +Y A
Sbjct: 388 RRWVPELADLPGKSVHEPWKLAAPPAGYPAP---IVDHAEARLESLRRYDA 435


>gi|21242230|ref|NP_641812.1| photolyase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107653|gb|AAM36348.1| photolyase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 484

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 169/484 (34%), Positives = 241/484 (49%), Gaps = 33/484 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63
           MS  +VW R DLR+ DN AL AA  ++    I ++I  P +   W     S    H   A
Sbjct: 13  MSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLA 71

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L    ++L   G+V +        +S + LD    Q     +++NR+YE     RD  +
Sbjct: 72  ALDGALRALG-SGLVIR------VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 124

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---RSLP 178
           ++ L+ R I  +S + ++L  P  +       YKV+TPF R AL Q  + A +   RSLP
Sbjct: 125 KRDLRERGIEVQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAIGAPRSLP 184

Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            +PA   T  +    +     +  Q     +  GE  A  +L  F    +  Y E RD P
Sbjct: 185 PLPASLKTDALDTLQLVPGLQWD-QGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRP 243

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295
              GTSQLSP+L  G ++P +  N L+          ++GA   +++ +L WR+F  HL+
Sbjct: 244 DRVGTSQLSPHLHFGEIAPWRIANTLETHRT-----ARNGAEIDAYIRQLGWRDFAYHLL 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             +P     +   P     +W   D   LQAW++G TG PI+DA MRQL   GWMHNR+R
Sbjct: 299 HHFPDTT-NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 357

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q
Sbjct: 358 MIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQ 417

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---NDLSLNYP-LPIVDHKKACHHT 470
            ++FDPQ  +I  W+PEL  +  +   AP  WL       L+  YP  PI+   +     
Sbjct: 418 AEKFDPQAAYITRWVPELGKLAVKERFAP--WLHPLSLARLAPEYPRTPIIGLAEGRDAA 475

Query: 471 LNQY 474
           L  Y
Sbjct: 476 LAAY 479


>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
 gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
          Length = 476

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 166/499 (33%), Positives = 233/499 (46%), Gaps = 51/499 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ D+  L  A   + A+V+ VF+  P   R    S  ++ F+   L +
Sbjct: 4   STAIVWFRRDLRLHDHPPLVRAL-AAHARVVPVFVLDPAIVRGRFASGARTAFMLDCLRE 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L ++G      +    +  +  L        V        Y I   RR +      
Sbjct: 63  LDADLRERGSGLVVRE-GRPERELPALAREIGAAAVHWASDATPYAIARDRRVRSALAAA 121

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA---LIQNLVQ----------ADL 174
           Q  V       + +   G     A   Y V+TPF +A   L +  V           A L
Sbjct: 122 QPAVAAVPGPGNFVADVGRPRTRAGGPYTVFTPFHRAWQQLERRTVHRTPAVLPPLPAGL 181

Query: 175 RSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
           R   +P   A+ LT  ++P+          +A++P    GE+ A     ++    +  Y 
Sbjct: 182 RRGALPSLAALGLTDELSPTA---------RAVEP----GERAARRAAERWLDGHLGDYA 228

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
              D  A  GTS LSPYL  G LS R+C  R        + +   GA +++ +L WR+FY
Sbjct: 229 RDHDRLA-GGTSALSPYLHHGCLSARECEQRA-------VRRGGEGAEAFVRQLAWRDFY 280

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            H++  +P     +        + W +D  LL AW+ G TGFP++DA MRQL   GWMHN
Sbjct: 281 AHVLLHHPEDVR-REHQERMRALRWERDDELLAAWQDGRTGFPLVDAGMRQLRASGWMHN 339

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFN 410
           R R++T SFL KDL +DWR GE +FM  LLDGD+ASNNG WQW AS G D  P F RI N
Sbjct: 340 RARLVTGSFLTKDLQLDWRAGEAWFMRWLLDGDVASNNGNWQWIASVGVDPAPAFRRILN 399

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVD 462
           P +Q +R DP G ++R W+PEL  VP   +  P  WL            +  +YP PIVD
Sbjct: 400 PALQQRRHDPDGAYVRRWVPELARVPDALLTEP--WLMSEQQQRAAGCRIGADYPAPIVD 457

Query: 463 HKKACHHTLNQYYAAKKQS 481
           H       L +Y AA  +S
Sbjct: 458 HAHERRRALERYRAAGSES 476


>gi|88855888|ref|ZP_01130550.1| DNA photolyase [marine actinobacterium PHSC20C1]
 gi|88814755|gb|EAR24615.1| DNA photolyase [marine actinobacterium PHSC20C1]
          Length = 476

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 154/481 (32%), Positives = 240/481 (49%), Gaps = 47/481 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLLQV 68
           +VWLRNDLR++DN AL AA  + D  ++ V+I   T +  R  G +++   +++ SL  +
Sbjct: 10  IVWLRNDLRLSDNPALTAAT-SEDRPLVVVYIHDETGDGIRPLGSASKW--WLHHSLTAL 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L + G             + + L +   +   T + +NR+Y         L     +
Sbjct: 67  DAALQKLGGQLTLSHGP----ATQVLPALVDELGATSVHWNRRYTAARDIDAGLKASLRE 122

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-LTGP 187
             +  +S   ++L  P  I N   + YKV+TP+ +A  +  V+  LR+     +R L G 
Sbjct: 123 QGLTVESHQGNLLNEPWHIRNGQGEPYKVFTPYWRAAQERPVRDALRAPTTTTLRWLAGS 182

Query: 188 VTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               +I  +   P      + +   +  GEQ A + L  F  E++  Y  +RD PA+  T
Sbjct: 183 PASDDIAEWNLLPTRPDWAEGLRETWTPGEQGARNRLESFVTERLADY-HRRDEPAVDAT 241

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301
           S LSP+L  G +SP Q W RL+      +  P ++    +L+E+ WREF   L+   P +
Sbjct: 242 SGLSPHLRFGEISPTQIWQRLRGTGSTDVPNPARNNVAKFLSEIGWREFSTALLFDNPRL 301

Query: 302 CMG--KPF---IPWT------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
                +P     PW         ++       ++AW++G TG P++DA MR+L   G MH
Sbjct: 302 ATDSYRPAYNAFPWGYTVDQIGGVDEPAGVSEVEAWRRGRTGIPLVDAGMRELWHTGTMH 361

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL+K+LL+DWR GE++F   L+D D ASN   WQW A +G D+ PYFR+FN
Sbjct: 362 NRVRMVVASFLIKNLLIDWRAGEQWFWDTLVDADEASNPANWQWVAGSGADAAPYFRVFN 421

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P +Q K+FDP G ++  W+PEL                    + NYP PIVD  +     
Sbjct: 422 PILQQKKFDPAGEYVARWIPELG-------------------TKNYPEPIVDLAETRREA 462

Query: 471 L 471
           L
Sbjct: 463 L 463


>gi|50954649|ref|YP_061937.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951131|gb|AAT88832.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 466

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 160/491 (32%), Positives = 242/491 (49%), Gaps = 68/491 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ--WRQHGISARQSHFIYASLLQV 68
           +VW R+DLR+ DN AL+AA   S   VI +++   +    R  G +AR   +++ SL  +
Sbjct: 12  VVWFRDDLRLADNPALHAAAE-SGRPVICLYVWDEDSPGLRSPGEAARW--WLHHSLTSL 68

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++S+ + G             +   L     +     +F+NR+Y   E R D+ ++   +
Sbjct: 69  EESIGRAGSALAIRTGP----AERVLAEVLAEVDAGAVFWNRRYGEGERRVDERVKSAAR 124

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--T 185
              ++  SF  ++L  P ++   +   + VYTPF +A    L + + R  P+PA+R    
Sbjct: 125 DTGLVANSFGANLLFEPWTVRTGSGTAFSVYTPFWRAC---LARPEPRR-PLPALRRLRP 180

Query: 186 GPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           GP  PS        +P   D+    +   +  GE+ A   L  F  E +  Y  +RD+P 
Sbjct: 181 GPSLPSLELDELKLLPVHPDW-ADGLRETWKPGERAAHRELSAFLGEGLARYRAERDVPG 239

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWREFYRHLM 295
           I  TS+LSP L  G LSP Q W+           + +S   GA ++L+EL WREF  H  
Sbjct: 240 IAATSRLSPRLRWGELSPFQVWH------ATAAARDRSTAEGAATFLSELGWREFAYHTY 293

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDS--------HLLQAWKQGYTGFPIIDAAMRQLNTIG 347
              P++         T  I    DS          L+AW+QG TG P++DA MR+L   G
Sbjct: 294 FERPALA--------TVNIHREYDSFPWPRLHPSALRAWQQGRTGVPLVDAGMRELWRTG 345

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
            MHNR+RM+ ASFL K+LL+DWR GE++F   L+D D ASN   WQW A +G D+ PYFR
Sbjct: 346 VMHNRVRMVAASFLTKNLLIDWRRGEQWFWDTLVDADPASNPFNWQWVAGSGADTAPYFR 405

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467
           +FNP +Q ++FDP G ++R W+PE +                     +YP P+VD  +  
Sbjct: 406 VFNPEVQREKFDPHGDYVRRWVPEWDTA-------------------DYPEPLVDLAETR 446

Query: 468 HHTLNQYYAAK 478
              L  +   K
Sbjct: 447 RAALAAWETVK 457


>gi|163735096|ref|ZP_02142532.1| deoxyribodipyrimidine photolyase, putative [Roseobacter litoralis
           Och 149]
 gi|161391554|gb|EDQ15887.1| deoxyribodipyrimidine photolyase, putative [Roseobacter litoralis
           Och 149]
          Length = 466

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 159/480 (33%), Positives = 237/480 (49%), Gaps = 35/480 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69
           +VW R DLR++D+ AL AA  + +  VI VFI   +Q    G + + +       L +  
Sbjct: 1   MVWFRRDLRLSDHPALNAAVKSGN-PVIPVFIHD-DQVETLGAAPKWRLGLGIDHLSETL 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           + L+ + I+ +         ++E L +   +     +F+ R Y+   V RD  L+  L Q
Sbjct: 59  EGLNSRLILRR-------GPALETLRTLVQETGAGAVFWTRLYDPAAVDRDTELKAALKQ 111

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVP-AIRL 184
             +  +SF   ++  P ++       YKVYTPF   +    V A L +   +P P A   
Sbjct: 112 DGIDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVDAPLSAPAKIPAPDAWPS 171

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  ++  N+    D     + P   +GE  A   L  F  + V  Y   RD PA+ GTS 
Sbjct: 172 SEALSDWNMGAAMDRGAAVVAPYVRLGEAAAQTRLSTFIDKIVARYDTTRDQPAVDGTSG 231

Query: 245 LSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           LS  L++G +SP QCW+   R ++E        K GA ++L EL+WREF  HLM   P +
Sbjct: 232 LSENLALGEISPHQCWHAGLRARQE-------GKPGAETFLKELVWREFAYHLMHHTPRI 284

Query: 302 CMGKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                   W +   WN+D  +  +  W+QG TG   +DAAMR+L   G MHNR RMI AS
Sbjct: 285 LTDNWKEGW-DSFPWNRDETTEAVMRWQQGRTGIQFVDAAMRELYVTGRMHNRGRMIVAS 343

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           +L K LL DW+IG ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q  +FD
Sbjct: 344 YLTKHLLSDWKIGLKWFEGCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFD 403

Query: 420 PQGTFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
               +++ W+ +    P++     Y   P +W    D    YP P+V   +     L  Y
Sbjct: 404 KDRQYVKRWIAQGRRAPSETALSFYDAIPRAWGLSGD--QEYPAPVVAADEGRKRALEAY 461


>gi|83942471|ref|ZP_00954932.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
 gi|83846564|gb|EAP84440.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
          Length = 473

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 162/477 (33%), Positives = 231/477 (48%), Gaps = 29/477 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR++D+ AL AA  N+   VI VFI              +      +L    +
Sbjct: 8   LLWYRRDLRLSDHPALSAAA-NAGRPVIPVFIKDKSVNALGAAPKWRLGLGVGALADSLE 66

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQH 129
            +S + I+ +        D++E L +   +     ++++R Y+ + V+RD K+ E     
Sbjct: 67  GVSSRLILRE-------GDALEALQALIKETGAGTVYWSRLYDPDSVQRDSKIKETLCND 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVP-AIRLT 185
            +  KSF   V+  P ++   A   YKVYTPF   +    V+  L +   LP P +   +
Sbjct: 120 GIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDLPAPESWPDS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +    D     +     +GE+ A   L  F    V  Y   RDIP   GTS L
Sbjct: 180 DALDGWGLGAAMDRGADVVRRFVCLGEKAAQSRLGAFMAHGVADYKLTRDIPGTDGTSNL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  LS+G +SP QCW+  +    D     K GA ++L EL+WREF  HLM   P +    
Sbjct: 240 SENLSLGEISPHQCWHAAQRALHD----GKQGAETFLKELVWREFAYHLMHHTPRMLTDN 295

Query: 306 PFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               W +   WN+D     ++AWKQG TG P +DAAMR+L   G MHNR RMI AS+L K
Sbjct: 296 WREEW-DAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRGRMIVASYLTK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L+  WRIG+++F   L+D D ASN  GWQWAA +G D+ PYFR+FNP  Q  +FD    
Sbjct: 355 HLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPETQLDKFDKNRD 414

Query: 424 FIRHWLPELNNVPTQYIHA-----PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +   W+ E    P +   A     P SW L  +D   +YP  I+   +     L  Y
Sbjct: 415 YASRWIAEGRANPHKDALAFFDAIPRSWPLSADD---DYPEKIIALDEGRERALETY 468


>gi|123965553|ref|YP_001010634.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515]
 gi|123199919|gb|ABM71527.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515]
          Length = 478

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 171/479 (35%), Positives = 248/479 (51%), Gaps = 47/479 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN AL  A   S+A + + +I   + + Q   +  ++ F+  SL ++ +
Sbjct: 7   LFWHRKDLRIYDNNALSKAFSLSNA-ITSTYIFD-QNYSQDFNANSRAWFLGNSLQELSR 64

Query: 71  ---SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
              +L  + I+ + +  +      + +D+  +        +N+  E  E+ RD  ++  L
Sbjct: 65  NWETLGSRMIIDEGNPLTLIPKLAQLIDAKFVA-------WNKAIEPYEINRDLEIKNTL 117

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPF------------RKALIQNLVQADL 174
           +  ++      D +LL P  I   + + Y VY PF             K  + N+    L
Sbjct: 118 KKFKIEIIELWDHLLLEPSQIHTGSNKPYTVYGPFYKKLKSKLQLLTSKKNLNNI--GKL 175

Query: 175 RSLPVPAIRLTGPVTPSNI--PRFFD-YPFQAID--PMFPIGEQNALHILRKFC-KEKVY 228
           + L +  I+ +  +  S +   +F     F  I+  P  P GE  A  +L +F  ++K+ 
Sbjct: 176 KDLEI-GIKESQKIDSSRLILEKFIKKVNFDGINLCPCKP-GEIAAEKLLDQFINQDKIG 233

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNEL 285
            Y   RD P   GTS LS  L  G +S R+ WN     F DL  K      S   W  EL
Sbjct: 234 SYASSRDFPDQNGTSFLSASLRFGTISIRKVWNSTL--FTDLKNKNNHNKISIETWQKEL 291

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREFY+H +  +P +  G P+    +   W  +      W  G TG PIIDAAMRQLN+
Sbjct: 292 VWREFYQHCLFHFPELEKG-PYRKKWDHFPWQNNHEWFDRWSNGETGVPIIDAAMRQLNS 350

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GWMHNR RMI ASFLVKDL+ +W++GEE FM  L+DGDLA+NNGGWQW+AS+G D  P 
Sbjct: 351 TGWMHNRCRMIVASFLVKDLICNWQMGEEKFMKVLVDGDLAANNGGWQWSASSGMDPKP- 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSWLDKNDLSLNYPLPIVDH 463
            RIFNP  Q K+FDP   +I+ W+PEL+ VP + I +   S L+KN    NY   IV+H
Sbjct: 410 LRIFNPYTQTKKFDPICKYIKFWIPELSKVPNKDILNGEISDLEKN----NYYGAIVNH 464


>gi|298208823|ref|YP_003717002.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
           HTCC2559]
 gi|83848750|gb|EAP86619.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
           HTCC2559]
          Length = 434

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 150/476 (31%), Positives = 229/476 (48%), Gaps = 49/476 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  V + W R DLR+ DN     A    D  V+ +FI   +   +   +  +  FI+ +L
Sbjct: 2   SKKVSIFWFRRDLRLDDNVGFLEALK-GDYPVLPLFIFDKDILDKLPENDARVTFIFETL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWL-DSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
            +++K L            + F D+ E +  S     ++ ++F NR YE     RD  ++
Sbjct: 61  QEMRKELQDD----YDSSLAMFHDTPEKVFKSLVKDYQIQEVFTNRDYEPYAKERDTSIK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L ++ +   ++ D V+     ++      Y VYTP++    +N     L+ +   +  
Sbjct: 117 ELLSKNNISFNTYKDQVIFEKDEVVKKDGDPYLVYTPYKNTWKENFKDHTLK-IHYTSQH 175

Query: 184 LTGPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           L   V  + +P     +  F+     FP  + +   I           Y + R+ PA  G
Sbjct: 176 LDNTVKNTRLPNVSLSEMGFKKSSISFPEYDTSPTLIEN---------YNDTRNFPAKDG 226

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSP+L  G +  R+ + +         I  K   F W NELIWREF+  ++  +P  
Sbjct: 227 TSNLSPHLRFGTVGIRKIYKKA--------IDAKDETF-W-NELIWREFFMQILYHFPE- 275

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            +   F    ++IEW  +    + WK G TG+P++DA MRQLN  G MHNR+RM+  SFL
Sbjct: 276 TVNNAFKKKYDRIEWRNNEDEFEKWKTGTTGYPLVDAGMRQLNETGLMHNRVRMVVGSFL 335

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+DWR GE YF  +LLD +++SN G WQW A +G D+ PYFRIFNPT Q  +FD  
Sbjct: 336 CKHLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIDKFDKN 395

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            T+I HW+ E N                   +  YP  +VDHK+A    LN Y +A
Sbjct: 396 KTYINHWVKEYN-------------------TNKYPEKMVDHKEARERCLNAYKSA 432


>gi|78047092|ref|YP_363267.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78035522|emb|CAJ23168.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 500

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 158/449 (35%), Positives = 225/449 (50%), Gaps = 27/449 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63
           MS  +VW R DLR+ DN AL AA  ++    I ++I  P +   W     S    H   A
Sbjct: 29  MSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLA 87

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L    ++L   G+V +        DS + LD    Q     +++NR+YE     RD  +
Sbjct: 88  ALDGALRALG-SGLVIRS------GDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 140

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQ----NLVQADLRSL 177
           ++ L+ R I  +S + ++L  P  +       YKV+TPF R AL Q      + A  R  
Sbjct: 141 KRDLRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLP 200

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           P+PA   T  +    +     +  Q     +  GE  A  +L  F    +  Y E RD P
Sbjct: 201 PLPASLKTDALDTLQLVPGLQWD-QGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRP 259

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295
              GTSQLSP+L  G ++P +  + L+          ++GA    ++ +L WR+F  HL+
Sbjct: 260 DRVGTSQLSPHLHFGEIAPWRIASTLEAHRT-----ARNGAEIDGYIRQLGWRDFAYHLL 314

Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             +P     +   P     +W   D   LQAW++G TG PI+DA MRQL   GWMHNR+R
Sbjct: 315 HHFPDTT-NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 373

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q
Sbjct: 374 MIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQ 433

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
            ++FDP  T+I  W+PEL  +  +   AP
Sbjct: 434 AEKFDPHATYITRWVPELGKLAVKERFAP 462


>gi|192291959|ref|YP_001992564.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
           TIE-1]
 gi|192285708|gb|ACF02089.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
           TIE-1]
          Length = 483

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 156/488 (31%), Positives = 232/488 (47%), Gaps = 33/488 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R+DLR+ D+ AL+AA   S A V+ V++          +      ++  SL  ++ 
Sbjct: 11  IVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDDVRALGGAVRWWLAQSLRALES 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +      +   L     Q     + +N + EI    R           
Sbjct: 70  DLRALGGALILRRGP----AAAVLAELAQQHDAAAVHWN-EIEI-AAHRAVADALADALT 123

Query: 131 VICKSFD---DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           V   ++       L+ P +I +   +  +V+TPF + ++   +    + LP P      P
Sbjct: 124 VAGIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLS--LGDPPQPLPRPTTLRPAP 181

Query: 188 VTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             PS+  +  D+  +   P         +  GE  A   L  F    +  Y + RD P  
Sbjct: 182 APPSD--QLGDWQLEPTAPDWAGGLRQTWTPGEAAAQARLSDFLA-GLPGYADGRDYPDR 238

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFY 298
             TS LSP+L  G +SPRQ W   +    +   I P    F  L+EL WREF RHL+  +
Sbjct: 239 HITSGLSPHLRFGEISPRQVWYAARFAAAERPAIAPDIDKF--LSELGWREFCRHLLFDH 296

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +   +   P  +   W  D  +L AW++G TG+PI+DA MR+L   G MHNR+RM+  
Sbjct: 297 PDLAT-RNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVG 355

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK LL+DWR+GE++F   L+D D  SN G WQW A  G D+ PYFR+FNP +Q ++F
Sbjct: 356 SFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKF 415

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLN 472
           D  G +I+ W+PEL  +P   IH P +           +L  NYP PIVDHK      L+
Sbjct: 416 DAGGAYIQRWVPELAGLPNDLIHQPWTATPLELAAAGIELGGNYPGPIVDHKTGRQRALS 475

Query: 473 QYYAAKKQ 480
            Y   +++
Sbjct: 476 AYAELRQR 483


>gi|296140720|ref|YP_003647963.1| deoxyribodipyrimidine photo-lyase [Tsukamurella paurometabola DSM
           20162]
 gi|296028854|gb|ADG79624.1| Deoxyribodipyrimidine photo-lyase [Tsukamurella paurometabola DSM
           20162]
          Length = 451

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 149/470 (31%), Positives = 226/470 (48%), Gaps = 26/470 (5%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W R DLR+ DN AL   C  + A  +   +         G   R++ +  A++L +   L
Sbjct: 6   WARRDLRLGDNPAL---CAAAAAGPVLPLVVLDPALLHDGARPREAWYA-ANVLALDDQL 61

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRV 131
             +        C      +E + +  L+   T +  +R+      RRD  +  RL +H +
Sbjct: 62  GGE-------LCLRSGSPVEEVLAVALETGATAVHVSRETTPFGSRRDASIRDRLAEHGI 114

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
                     + PG I+      Y+V+  F++A  ++   A  + LP        P   +
Sbjct: 115 DWVETGSPYAVTPGRIVKSDGTPYRVFGAFQRAWREHRWPAPAQ-LPDRVHWARPPAGGA 173

Query: 192 NIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
              R      +A   P+ P GE  AL    +F  +++  Y + RD P    +S+LSPYL 
Sbjct: 174 AERRSLAAMVEASPVPLPPAGESAALDRWHRFRTDELARYAQDRDRPDHDASSRLSPYLK 233

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           +G + PR     L             GA  + +EL WR+FY  ++  +P   +       
Sbjct: 234 VGAVHPRTLLTGLGS---------SDGAAKYASELCWRDFYADVLYHHPD-SLRTDLTKA 283

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
              +E+        AW++G TG+P++DA MRQL T GWMHNR+RM+ ASFL KDL V W 
Sbjct: 284 LAGLEYTPPGADFTAWQRGATGYPLVDAGMRQLRTEGWMHNRVRMVVASFLSKDLHVWWP 343

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G  +F+  LLDGD ASN  GWQW A TG D+ PYFR+FNPT Q ++FDP+G ++R ++P
Sbjct: 344 HGAAHFLDLLLDGDPASNAHGWQWVAGTGTDAAPYFRVFNPTTQAEKFDPRGDYVRRYVP 403

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           EL ++      AP  W   +  +  YP PIVDH +    TL +Y   + +
Sbjct: 404 ELRHLDGAAALAP--WKHTDGYAHGYPAPIVDHAEERAVTLARYGTVRGK 451


>gi|297195865|ref|ZP_06913263.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197720806|gb|EDY64714.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 457

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 235/465 (50%), Gaps = 32/465 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L AA   +D +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MTVAVVLFTSDLRLHDHPPLRAALRAAD-EVVPLFVLDPGIGAAGFEAPNRCAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++G      +       +  + + C    V       +Y     RR++LL   
Sbjct: 60  DLDASLRERGGRLVV-RSGPVAQQVGAIAAECGAGEVHMAAGVTRYA---RRREELLRTV 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPA 181
           L+ R       D+V+  + PG++       Y V+TP+ +   Q  ++   R   ++PVP 
Sbjct: 116 LRERGATLRTHDAVITVVAPGAVTPAGSDHYSVFTPYFRRWSQQRLRDPCRAPRTVPVP- 174

Query: 182 IRLTGPVTPSN--IPRFFDYPFQAIDPMFPIGEQNALHI-LRKFCKEKVYYYVEQRDIPA 238
           + + G   PS   +PR        I P  P G ++A       +    +  Y  Q D  A
Sbjct: 175 VTMHGEPLPSRDAVPR--------ISPGLPAGGESAGRKRFHDWEASGLDAYDVQHDSLA 226

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TS+LSPYL  G LSP        E   +      +GA +++ +L WR+F+  +MA  
Sbjct: 227 GDMTSRLSPYLHFGALSP-------LELVREASAHGGTGAEAFVRQLCWRDFHHQVMAAR 279

Query: 299 PSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           P+  + + + P  ++     D+   + AWK+G TGFP++DAAMRQL   GWMHNR R++ 
Sbjct: 280 PASSV-EDYRPRHDRWRTQDDAAEDITAWKEGATGFPVVDAAMRQLRHEGWMHNRARLLV 338

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K L VDWRIG  YF+ +L+DGD+ +N   WQW A TG D+ P+ R+ NP +QGKR
Sbjct: 339 ASFLTKTLYVDWRIGARYFLDRLVDGDIVNNQLNWQWVAGTGTDTRPH-RVLNPVVQGKR 397

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           FDP+G ++R W+PEL  +P   +H P          L+YP P++D
Sbjct: 398 FDPRGEYVRRWVPELREIPDGAVHEPWRLPADRRARLDYPDPLID 442


>gi|325928738|ref|ZP_08189908.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
           91-118]
 gi|325540906|gb|EGD12478.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
           91-118]
          Length = 472

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 166/488 (34%), Positives = 240/488 (49%), Gaps = 33/488 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63
           MS  +VW R DLR+ DN AL AA  ++    I ++I  P +   W     S    H   A
Sbjct: 1   MSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLA 59

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L    ++L   G+V +        +S + LD    Q     +++NR+YE     RD  +
Sbjct: 60  ALDGALRALG-SGLVIRS------GNSAQVLDEVIAQTGAAAVYWNRKYEPATQPRDAQI 112

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQ----NLVQADLRSL 177
           ++ L+ R I  +S + ++L  P  +       YKV+TPF R AL Q      + A  R  
Sbjct: 113 KRDLRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLP 172

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           P+PA   T  +    +     +  Q     +  GE  A  +L  F    +  Y E RD P
Sbjct: 173 PLPASLKTDALDTLQLVPGLQWD-QGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRP 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295
              GTSQLSP+L  G ++P +  + L+          ++GA   +++ +L WR+F  HL+
Sbjct: 232 DRVGTSQLSPHLHFGEIAPWRIASTLETHRT-----ARNGAEIDAYIRQLGWRDFAYHLL 286

Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             +P     +   P     +W   D   LQAW++G TG PI+DA MRQL   GWMHNR+R
Sbjct: 287 HHFPDTT-NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 345

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q
Sbjct: 346 MIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQ 405

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYPL-PIVDHKKACHHT 470
            ++FDPQ  +I  W+PEL  +  +   AP  WL    L+     YP  PI+   +     
Sbjct: 406 AEKFDPQAAYITRWVPELGKLAVKERFAP--WLHPLSLARFAPEYPRNPIIGLAEGRDAA 463

Query: 471 LNQYYAAK 478
           L  Y  ++
Sbjct: 464 LAAYAKSR 471


>gi|89054480|ref|YP_509931.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
 gi|88864029|gb|ABD54906.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
          Length = 468

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 153/478 (32%), Positives = 231/478 (48%), Gaps = 32/478 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69
           + W+R D R++DN AL AAC      V+ +FI   E    HG + + +      +  +  
Sbjct: 4   IYWVRRDFRLSDNPALVAACERG--AVVPLFICD-EVIEGHGAAPKWRLGLGVEAFAEAL 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            ++  K I+ +        D++  L +         + +NR Y+ +  +RD+ ++  L+ 
Sbjct: 61  HAVGSKLILRR-------GDALPTLRAVIADVSANAVHWNRLYDPDSRKRDEAVKAALKE 113

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   S    VL  P ++       YKVYTPF K +        L +  +PA   T P 
Sbjct: 114 DGVEAISHKGHVLFEPWTVETKTGGYYKVYTPFWKMVRDRSPGEALAAPKIPAPD-TWPA 172

Query: 189 TPS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      ++ +  +   + + P   +GEQ A   L  F    +  Y + RD  A  GTS 
Sbjct: 173 SDDLSDWHLGKAMNRGAEVVAPHLNVGEQAAQGRLGAFIGNGIDDYADARDNLAKNGTSL 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS  L+ G +S RQCW+  +    D     K GA ++L E++WR+F  HL+   P +   
Sbjct: 233 LSENLAYGEISARQCWHAGQRAMAD----GKPGAETFLKEVVWRDFAYHLVHHTPRITTA 288

Query: 305 KPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                W E   WN D     + AWKQG TG  ++DAAMR++   G MHNR RM+ AS+L 
Sbjct: 289 NWREEW-EAFPWNTDPDTPEVTAWKQGRTGMAVVDAAMREMYVTGRMHNRARMLVASYLT 347

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L+ DW+IG ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q ++FD  G
Sbjct: 348 KHLMTDWKIGMDWFEECLVDWDPASNAMGWQWSAGSGPDATPYFRVFNPETQAEKFDKAG 407

Query: 423 TFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQY 474
            +   WL E+   P     A     P +W    D ++ YP  PIV   +     L+ Y
Sbjct: 408 RYRMRWLAEITGKPQDTASAYFDAVPRAW--GLDPTMGYPSAPIVTASEGRKRALDAY 463


>gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
 gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
          Length = 479

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/485 (31%), Positives = 236/485 (48%), Gaps = 39/485 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R+DLR+ D+ AL+ A   S   +I ++I        H + A    ++  +L  +++
Sbjct: 10  IVWFRDDLRMADHPALHEAA-ASGWPLICLYILDDVTPALHPLGAAARWWLRGALADLRR 68

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L ++G        S    + + L     Q     + ++ +    E  +D  + + L+ +
Sbjct: 69  NLEKQGGTLLTLSGS----AEKLLPQLAKQTDAASVHWHHRLHERERAQDNRIRRTLEEQ 124

Query: 131 VICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             C+      +VL+ P ++       YKV   F KAL  + V   L +      RL+   
Sbjct: 125 E-CEVHAQWGTVLVDPDTVQTKQGGFYKVCGSFWKALQTHAVPEPLEA----PSRLSFHA 179

Query: 189 TPSNIPRFFDYPFQAIDPMFPI-----------GEQNALHILRKFCKEKVYYYVEQRDIP 237
            P+++         ++ P  P            GE      L  F K  V  Y   RD  
Sbjct: 180 IPASVLSDARLNEDSLCPQAPDWAAGFRKTWEPGEAEGQEHLEDFLKNSVAGYPRGRDRV 239

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A +GTS+LSPYL+ G +SPRQ W  L++           G   +L+EL WREF R+ +  
Sbjct: 240 AEEGTSRLSPYLASGAVSPRQVWAALQKHGAH-----TDGPRIFLSELGWREFARYTLYH 294

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +   +   P    + W + +  L+AW++G TG PI+DA MRQL   GWMHNR RMI 
Sbjct: 295 LPKLPF-ENLSPKFSGMHWRRSAADLKAWQRGQTGVPIVDAGMRQLWQTGWMHNRARMIV 353

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFL K LL+DW+ G+ +F   L+D D A+N   WQW A TG ++ P+FRIFNPT Q ++
Sbjct: 354 GSFLTKHLLIDWKEGDAWFRDTLVDADFANNAMNWQWVAGTGIEATPFFRIFNPTRQAEK 413

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHH 469
           FDP G +IR W+PEL  +  + +  P  W  K++        L  +YP PIVD K+    
Sbjct: 414 FDPNGDYIRQWVPELRRLSGKALFEP--WAAKDEELEKAGVRLGKSYPRPIVDLKEGRDR 471

Query: 470 TLNQY 474
            L  +
Sbjct: 472 ALQAF 476


>gi|295096577|emb|CBK85667.1| Deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 278

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/262 (45%), Positives = 166/262 (63%), Gaps = 6/262 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLRI DN AL AAC   DA V+A+FIATPEQWRQH ++ RQ+  + A L 
Sbjct: 1   MPTHLVWFRADLRIHDNFALAAACRAKDANVLALFIATPEQWRQHDMAPRQAALLSAYLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q SL++KGI   Y +  +F    + + + C Q  VT L+YN QYE NE +RD+ LEK 
Sbjct: 61  DLQHSLAEKGIPLIYKEAHDFAAQRQTVQAICQQHAVTHLYYNYQYEFNEQQRDRQLEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V+C+ FDDSV+L PGS++  + +MYKV+TPF+ A I+ L +     +  P +R   
Sbjct: 121 LAG-VVCEGFDDSVMLAPGSVMTGSHEMYKVFTPFKNAFIKRLKEGLPECVTAPTVRGE- 178

Query: 187 PVTPSNIPRF-FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             T +++P    +YP Q+ D  +FP  E+ A+  LR+FC +    Y  +RD PA +GTS+
Sbjct: 179 --TITDMPAIRLNYPQQSFDETVFPASEKAAIDRLRQFCTQGAAEYEARRDFPATEGTSR 236

Query: 245 LSPYLSIGVLSPRQCWNRLKEE 266
           LS  L++G LSPRQC +RL  E
Sbjct: 237 LSACLALGALSPRQCLHRLLAE 258


>gi|39936242|ref|NP_948518.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
           CGA009]
 gi|39650097|emb|CAE28620.1| Deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
           CGA009]
          Length = 483

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/487 (31%), Positives = 228/487 (46%), Gaps = 31/487 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R+DLR+ D+ AL+AA   S A V+ V++          +      ++  SL  ++ 
Sbjct: 11  IVWFRDDLRLADHPALHAAA-QSGAPVLCVYVLDEVSDDVRALGGAVRWWLAQSLRALES 69

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-- 128
            L   G      +      +   L     Q     + +N + EI   R            
Sbjct: 70  ELRALGGALILRRGP----TAAVLAELAQQHDAAAVHWN-EIEIAAHRAVADALADALTV 124

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +         L+ P +I +   +  +V+TPF + ++   +    + LP P      P 
Sbjct: 125 AGIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLS--LGDPPQPLPRPTTLRPAPA 182

Query: 189 TPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            P+   +  D+  +   P         +  GE  A   L  F   +  Y  E RD P   
Sbjct: 183 VPTE--QLSDWQLEPTAPDWAGGLRQTWTPGEAAAQTRLAAFLAMQPGY-AEGRDYPDRH 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            TS LSP+L  G +SPRQ W   +    +   I P    F  L+E+ WREF RHL+  +P
Sbjct: 240 ITSGLSPHLRFGEISPRQVWYAARFAAAERPAIAPDIDKF--LSEVGWREFCRHLLFDHP 297

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   +   P  +   W  D  +L AW++G TG+PI+DA MR+L   G MHNR+RM+  S
Sbjct: 298 DLA-SRNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVGS 356

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK LL+DWR+GE++F   L+D D  SN G WQW A  G D+ PYFR+FNP +Q ++FD
Sbjct: 357 FLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFD 416

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473
             G +IR W+PEL  +P   IH P +            L  NYP PIVDHK      L+ 
Sbjct: 417 AGGAYIRRWVPELARLPNDLIHQPWTATPLELAAAGIKLGGNYPGPIVDHKTGRQRALSA 476

Query: 474 YYAAKKQ 480
           Y   +++
Sbjct: 477 YAELRQR 483


>gi|149914833|ref|ZP_01903363.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149811626|gb|EDM71461.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 473

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 146/412 (35%), Positives = 210/412 (50%), Gaps = 47/412 (11%)

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSI 147
           D+ + L +   +     ++++R Y+   V RDK ++  L Q  +  +S++  ++  P ++
Sbjct: 78  DATQTLRALATETGAGAVYWSRAYDPESVARDKAVKAALKQDGLDARSYEGHLMFEPWTV 137

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ----- 202
              A   Y+VYTPF + + +       R +P P         PS+IP   D+P       
Sbjct: 138 ETGAGGFYRVYTPFWRTVKE-------RDVPEPE------PAPSHIPAPKDWPLSDALED 184

Query: 203 -----AID-------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                A+D       P   +GE+ A   L  F    +  Y   RD+PA  GTS LS  L+
Sbjct: 185 WRLAAAMDRGAAICRPYQRVGEEAAQGRLGWFTGHAIGAYDTARDLPAEDGTSGLSENLA 244

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           +G +SPR+CW+      +  + + K GA +WL EL+WREF  HL    P +        W
Sbjct: 245 LGEISPRRCWH----AGMRAMHEGKPGAETWLKELVWREFAYHLAWHTPRIVNRNWREDW 300

Query: 311 TEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
            +   WN+D    Q  AWKQG TG P +DAAMR++   G MHNR RMI AS+L K LL  
Sbjct: 301 -DAFPWNEDEDHPQVIAWKQGRTGIPFVDAAMREMYVTGRMHNRARMIVASYLTKHLLSH 359

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WRIG+++F + L D D ASN  GWQW+A +G D+ PYFR+FNP  Q ++FDP+  ++  W
Sbjct: 360 WRIGQKWFEACLTDWDPASNAMGWQWSAGSGPDATPYFRVFNPETQVQKFDPKSRYLDRW 419

Query: 429 LPELNNVPT----QYIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           + E    PT     Y  A P  W L  +D+   YP PIV  K      L  Y
Sbjct: 420 IAEGRRNPTDTALSYFEAIPRKWGLSADDI---YPEPIVSVKDGRAKALAAY 468


>gi|255022957|ref|ZP_05294943.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J1-208]
          Length = 246

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 116/244 (47%), Positives = 150/244 (61%), Gaps = 13/244 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LS YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   +P+ 
Sbjct: 4   TSHLSRYLRTGEISIRTIWQALQE------TEATEGRATFEKELCWRDFYNMIYVSFPN- 56

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +P       IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL
Sbjct: 57  QKNEPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFL 116

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDLL+DWR GE+YF   L+D D ASN GGWQWAAST  D+VPYFRIFNPT Q ++FDP 
Sbjct: 117 TKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTATDAVPYFRIFNPTTQAQKFDPT 176

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           G FIR ++ EL N+P +YIH P    +         L  +YP P+VDHK+     + +Y 
Sbjct: 177 GKFIRKYVKELANLPDKYIHQPEKMSETVQKEHGLILGKDYPFPLVDHKERRKLAIARYE 236

Query: 476 AAKK 479
            +K+
Sbjct: 237 FSKE 240


>gi|99081282|ref|YP_613436.1| deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
 gi|99037562|gb|ABF64174.1| Deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
          Length = 474

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 161/484 (33%), Positives = 234/484 (48%), Gaps = 34/484 (7%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W+R DLR+ DN AL AA   +   +I ++I   ++     + A     +   L +  K+L
Sbjct: 10  WIRRDLRLRDNPALRAA-QEAGGPIIPLYIHDAQE---EALGAAPKFRLGLGLERFAKTL 65

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
            +KG      +     D++E L     +     + ++R Y+    +RD  +++ L+   I
Sbjct: 66  EEKGSRLIVRRG----DALEVLREVIAESGAGHVIWSRLYDPAATKRDAKIKEALKASDI 121

Query: 133 -CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
             KS    +L  P ++      MY+VYTPF KA+    V A+L + P    RL  P +  
Sbjct: 122 KAKSTGGRLLFEPWTVDTKDGGMYRVYTPFWKAVRTRDV-AELTAAPS---RLAAPESWP 177

Query: 192 NIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +     D    A        +     +GE  AL  L  F  E+V  Y   RD PA   TS
Sbjct: 178 SGEALADLGMDAAMRRGGAIVAQHCRVGEDAALAQLDDFLTERVSNYKAHRDFPARAATS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS  L+ G +SP + W+   +   D     + GA  +L E++WREF  HLM   P +  
Sbjct: 238 ELSENLAWGEISPHRMWHLGAQAMQD----GQPGAEHFLKEVVWREFAYHLMHRSPRILT 293

Query: 304 GKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                 W +   W  D    LQ W+QG TG+  +DAAMR+L   G MHNR RMI ASFL 
Sbjct: 294 RNWREEW-DGFPWQDDPGDALQRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASFLT 352

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L++ W+ G ++F   L+D D ASN  GWQW A +G D+ P+FRIFNP  Q ++FDP+G
Sbjct: 353 KHLMIHWKYGLQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDPKG 412

Query: 423 TFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            + R WLPE    P +   A     P  W    D S     PI+  K+     L+ Y  +
Sbjct: 413 DYARRWLPEGQANPPETAMAYFEAIPRRWSLHPDQSRVS--PIIGLKEGRERALSAYKES 470

Query: 478 KKQS 481
           + QS
Sbjct: 471 RNQS 474


>gi|288919996|ref|ZP_06414317.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
 gi|288348649|gb|EFC82905.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
          Length = 472

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 228/484 (47%), Gaps = 39/484 (8%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           WLR DLR+ DN AL AA       V+A+F+      R  G    +  F+Y  L  + + L
Sbjct: 3   WLRRDLRLDDNPALIAAA--GQGPVLALFVLDEALCRPAGPV--RLAFLYRCLRDLDRRL 58

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL--QHR 130
           + +        C    D  + + +   +     +     +     RRD+ + + L    R
Sbjct: 59  AGR-------LCVRAGDPEQVVPAVAGEIGADVVHIAADHGPYGRRRDERVARALLAGGR 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            + ++   +  + PG ++      Y+V+TPF +A   +         P P      P  P
Sbjct: 112 ELRRT-GSAYAVEPGRLVKPDGSPYRVFTPFYRAWKAH-------GWPEPVA--PAPTEP 161

Query: 191 SNI-PRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             + P       + I P        + P GEQ A   L  F +  +  Y   RD PA   
Sbjct: 162 DWLDPASLSGGSEEIPPDPVLDGVTLPPPGEQAAHDRLHAFLRGPLGDYARHRDEPAADV 221

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAF 297
           TS+LSPYL  G + PR   + ++            GA      + +E+ WREFY  ++A 
Sbjct: 222 TSRLSPYLKWGCIHPRTVLDGVRTATAPSTDGATDGATEAAEKFRSEIAWREFYADVLAA 281

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            PS            ++ +       +AWK G TG+PI+DA MRQL   GW+HNR+RMI 
Sbjct: 282 NPSSARSD-LSETLARMSYEPPGESFEAWKWGRTGYPIVDAGMRQLLAEGWVHNRVRMIE 340

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASF+ KDL V W  G  +++ +L+DGDLASNN GWQW A TG D+ PYFR+FNP  QG+R
Sbjct: 341 ASFVCKDLHVHWAHGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFRVFNPVSQGRR 400

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP G +IR W+PEL  +P + +H P  W         YP PIVDH       L ++  A
Sbjct: 401 FDPDGEYIRRWVPELRGLPAELVHEP--WKCPGGPPNGYPGPIVDHAVERRDALARHAQA 458

Query: 478 KKQS 481
           +  S
Sbjct: 459 RNAS 462


>gi|260427905|ref|ZP_05781884.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
 gi|260422397|gb|EEX15648.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
          Length = 475

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 162/483 (33%), Positives = 229/483 (47%), Gaps = 41/483 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI---SARQSHFIYASLLQ 67
           +VW+R DLR+TD+ AL+ A   S   VI VFI      R HG+    A     +   L  
Sbjct: 10  IVWIRRDLRLTDHAALHEAG-RSGRPVIPVFI------RDHGVDSLGAAPKWRLGQGLGH 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             K L  KG             + E L++   +     +++ R Y+   + RD  ++  L
Sbjct: 63  FAKLLGDKGSRLVLRAGP----AREVLEALIDETAAGAVWWQRAYDPAAIERDTAVKAAL 118

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + R    +SF   +L  P ++       YKVY+PF +A+ +  V      L  P+ +LT 
Sbjct: 119 KDRGTDVRSFAGHLLFEPWTVETKQGGYYKVYSPFWRAVCERDVP---EPLAAPS-KLTP 174

Query: 187 PVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P +        D+   A        ++    +GE+ A   L  F    V  Y + R++ A
Sbjct: 175 PESWPEGEALDDWQLGAAMRRGGPVVEAHVRLGEETAQARLGAFMANGVDGYKDGRNLVA 234

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             G S LS  LS+G +SP QCW+      +      K+GA +W  EL+WREF  HLM   
Sbjct: 235 EDGCSGLSENLSLGEISPAQCWHAA----MRARDAGKAGAETWAKELVWREFAYHLMWHT 290

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           P +        W +   WNKD    +  AWK+  TG P +DAA+R++   G MHNR RMI
Sbjct: 291 PHLLEDNWREEW-KAFPWNKDERRREVIAWKRARTGIPFVDAALREMYVTGRMHNRARMI 349

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS+L K L+  W+IG ++F   L D D ASN  GWQW A +G D+ PYFR+FNP  Q +
Sbjct: 350 VASYLTKHLMCHWKIGLDWFEDCLTDWDPASNALGWQWTAGSGPDAAPYFRVFNPITQRE 409

Query: 417 RFDPQGTFIRHWLPELNNVPT----QYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
           +FDP   +IR W+ E    PT     Y  A P SW    D    YP P+V  +      L
Sbjct: 410 KFDPDRAYIRRWIAEGEGTPTDTALSYFDAIPESWAMSPDDP--YPEPVVSAEDGRKAAL 467

Query: 472 NQY 474
             Y
Sbjct: 468 AAY 470


>gi|317123324|ref|YP_004097436.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
           DSM 43043]
 gi|315587412|gb|ADU46709.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
           DSM 43043]
          Length = 455

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 156/493 (31%), Positives = 228/493 (46%), Gaps = 58/493 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V ++W R DLR++D+ AL AA  +S   V+ VF+  P   R       +S  +  SL 
Sbjct: 1   MTVSVLWFRRDLRVSDHPALLAAL-DSGTSVLPVFVLDP---RLLETGQPRSRRLITSLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL         H      + ++ +     +     +   R+       RD  +E  
Sbjct: 57  ALADSLDG-------HLVVRTGNPVDVIPQVAREVGAESVHVTRETTPFGRTRDAAVEVA 109

Query: 127 LQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           LQ    R++           PG ++  +   Y+V+TPF +A   +         P PA  
Sbjct: 110 LQSEGRRLVATGT--PYAAGPGLVVTQSGAPYRVFTPFARAWRAH-------GSPPPA-- 158

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI------------LRKFCKEKVYYYV 231
                 P  IP +FD     +    P                     L    + ++  Y 
Sbjct: 159 ----APPLRIP-WFDGDVGGL--ALPAVAAAGGPGGIAGEAAARTRWLDFLAEGRLGRYA 211

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWR 288
           E RD P +  TS++S  L  G + PR           D+   P     GA +++ EL WR
Sbjct: 212 EDRDRPDLDATSRMSVPLKYGEIHPRTL-------LADIASHPDGRTGGAATFVTELAWR 264

Query: 289 EFYRHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           EFY  ++   P       +P +      +  +   L+ AW++G TG+PI+DA MRQL   
Sbjct: 265 EFYADVLWHRPESAWEDLRPDLGRMSYDDGPETDRLVAAWREGRTGYPIVDAGMRQLLGE 324

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNRLRMITASFL KDL V W +G  YF+ QLLDGD+ASN+ GWQW A TG D+ PYF
Sbjct: 325 GWMHNRLRMITASFLTKDLHVWWPVGARYFLDQLLDGDIASNSHGWQWVAGTGTDAAPYF 384

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           R+ NP  Q  RFDP+G ++R W+PEL ++    +H P  W   N  +  YP  +VDH   
Sbjct: 385 RVLNPLRQAHRFDPEGDYVRRWVPELGHLAGPAVHEP--WDHPNGYAHGYPGRVVDHDAE 442

Query: 467 CHHTLNQYYAAKK 479
               L +Y  +++
Sbjct: 443 RREALARYELSRR 455


>gi|294626579|ref|ZP_06705177.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599146|gb|EFF43285.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 484

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 167/488 (34%), Positives = 241/488 (49%), Gaps = 33/488 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63
           MS  +VW R DLR+ DN AL AA  ++    I ++I  P +   W     S    H   A
Sbjct: 13  MSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLA 71

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L    ++L   G+V +        +S + LD    Q     +++NR+YE     RD  +
Sbjct: 72  ALDGALRALG-SGLVIR------VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 124

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---RSLP 178
           ++ L+ R I  +S + ++L  P  +       YKV+TPF R AL Q  + A +   RSLP
Sbjct: 125 KRDLRERGIEVQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMGAPRSLP 184

Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            +PA   T  +    +     +  Q     +  GE  A  +L  F    +  Y E RD P
Sbjct: 185 PLPASLKTDALDMLQLVPGVQWD-QGFWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRP 243

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295
              GTSQLSP+L  G ++P +  + L+          ++GA    ++ +L WR+F  HL+
Sbjct: 244 DRVGTSQLSPHLHFGEIAPWRIASTLETHRT-----ARNGAEIDGYIRQLGWRDFAYHLL 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             +P     +   P     +W   D   LQAW++G TG PI+DA MRQL   GWMHNR+R
Sbjct: 299 HHFPDTT-NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 357

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q
Sbjct: 358 MIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQ 417

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP----LPIVDHKKACHHT 470
            ++FDPQ  +I  W+PEL  +  +   AP  WL    L+   P     PI+   +     
Sbjct: 418 AEKFDPQAAYITRWVPELGKLAVKERFAP--WLHPLSLARVAPQYPRAPIIGLAEGRDAA 475

Query: 471 LNQYYAAK 478
           L  Y  ++
Sbjct: 476 LAAYTKSR 483


>gi|83718773|ref|YP_442347.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
 gi|257138547|ref|ZP_05586809.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
 gi|83652598|gb|ABC36661.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
          Length = 486

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 157/496 (31%), Positives = 239/496 (48%), Gaps = 30/496 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +  + +  +VW R+DLR++D+ AL A    S   VI V++   E+     +      +
Sbjct: 1   MSSFDSTAPAVVWFRDDLRVSDHPAL-ARAAESGRPVIGVYV-FDERAGGRALGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        +++NR+Y   +   D
Sbjct: 59  LHGSLRALDAALAGLGGRLVLLRGDEADTFV----SFVAALGAGAVYWNRRYAFAQRALD 114

Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L   RV  ++F+ S+L  P  I+N   + Y+V+  + +A ++   +        
Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALR---RGAPPPPLA 171

Query: 180 PAIRLTGPVTPSNIPRF-FDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKV 227
              RL G   P  + R   +     ++P  P            GE  A  +LR F   ++
Sbjct: 172 APRRLNGGALPEALARRRVELDALGLEPTRPDWAGGLRDAWRFGEDAAHSLLRAFVDSRL 231

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y  +RD P I  TS+LSPY+  G LS RQ W    +         ++    +L+EL W
Sbjct: 232 GGYATERDRPGIASTSRLSPYVRFGNLSVRQIWQAAVDAHAHRAAT-QADLDKFLSELGW 290

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF    +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   G
Sbjct: 291 REFCWAQLYRFPDLPR-RNLRHTLDGMPWRDDPAGLAAWRRGATGYPFVDAGMRELWATG 349

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNR RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFR
Sbjct: 350 WMHNRARMVCASFLVKHLLIDWREGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFR 409

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461
           IFNP  QGK+FDP G ++R W+PEL  +P   IH P +            L   YP+P+V
Sbjct: 410 IFNPVAQGKKFDPDGAYVRRWVPELAGLPPAAIHEPWAAPPAQLAAAGVRLGDTYPVPVV 469

Query: 462 DHKKACHHTLNQYYAA 477
            H  A    L+ +  A
Sbjct: 470 AHDAARRRALDAFATA 485


>gi|190573805|ref|YP_001971650.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a]
 gi|190011727|emb|CAQ45346.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a]
          Length = 473

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 227/466 (48%), Gaps = 23/466 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           +SV LVW R DLR+ DN AL AA  ++   V+ V+I  P +  +    A    + + SL 
Sbjct: 3   VSVALVWFRRDLRLQDNPALQAAL-DAGHDVVPVYIHAPHEEGEWAPGAASDAWRHRSLA 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G            DS+  L     Q     +++NR+YE     RD  +++ 
Sbjct: 62  ALDADLRTRGSSLVLRSG----DSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKRM 117

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP---VPAI 182
           L+ + I  +S + S+L  P  I     Q YKV+TP+ + ++ +     L++ P    P  
Sbjct: 118 LREQGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPEALAPHA 177

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             +  +    +    D+     +   P GE  AL  L  F    +  Y EQRD+P   GT
Sbjct: 178 VDSLALDDLQLAPTLDWDTGFWEHWQP-GEAGALEALSVFEDGALRGYREQRDLPDRVGT 236

Query: 243 SQLSPYLSIGVLSP---RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           S+LSP+L  G ++P         L+    D  I        +L +L WR+F  HL+  +P
Sbjct: 237 SRLSPHLHFGEIAPWRIAHALEGLRSAGTDADID------GYLRQLGWRDFAYHLLHHFP 290

Query: 300 SVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                    P  ++  W   S   L AW++G TG PI+DA +R+L   G+MHNR+RMI A
Sbjct: 291 KTPTDN-LNPRFDRFPWATPSEAQLHAWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVA 349

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S+L K L   W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++F
Sbjct: 350 SYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKF 409

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSLNYPLPIVD 462
           DPQ  +I  W+PEL  +P +   AP  H  L         P P+VD
Sbjct: 410 DPQARYISRWVPELAALPVKARFAPWQHPLLLATHAPGYPPTPLVD 455


>gi|148260613|ref|YP_001234740.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5]
 gi|146402294|gb|ABQ30821.1| deoxyribodipyrimidine photo-lyase type I [Acidiphilium cryptum
           JF-5]
          Length = 471

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 160/492 (32%), Positives = 234/492 (47%), Gaps = 39/492 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+WLRNDLR+ DN AL AA    +  V+ VF+  P    + G ++R   +++ SL 
Sbjct: 1   MATTLLWLRNDLRLADNPALAAAIEEGN--VLPVFVLDPAA--ETGGASRW--WLHHSLA 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++   + +G      +     D+   + +   +     +   R +E      D+ +   
Sbjct: 55  ALEADFTARGGRLVLRR----GDAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAA 110

Query: 127 LQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ   I      S L+  P  I      +Y VYTPF +A                  RL 
Sbjct: 111 LQEAGIGFHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIPA---PARLA 167

Query: 186 GPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
               P    R  D+    + P         +  GE  A   L  F  +    Y  QRD+P
Sbjct: 168 AAGDPGG-DRLGDWGLLPVKPDWAGGLRASWTPGEAGARARLDAFLADGFGEYDRQRDLP 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295
            I GTS LSP+L  G ++    W          +  P   A   ++L ELIWREF  +L+
Sbjct: 227 GIAGTSGLSPHLHWGEIAIDAVWR-------AAVAAPGRDAARQTFLKELIWREFAAYLL 279

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P +   +P       + W + +  L AW++G TG PI+DA MRQL   GWMHNR+RM
Sbjct: 280 WHTPDLAT-RPMKAQFAAMPWRESAADLAAWQRGRTGVPIVDAGMRQLWQTGWMHNRVRM 338

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFLVK LL+ W+ GE +F   L+D D ASN   WQW A +G D+ PYFRIFNP +QG
Sbjct: 339 IVASFLVKHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQG 398

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHH 469
           ++FDP G ++R ++PE+ N+P +Y+HAP    +         L  +YP P+VD  +    
Sbjct: 399 RKFDPDGAYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPVVDLAEGRER 458

Query: 470 TLNQYYAAKKQS 481
            L  + A   ++
Sbjct: 459 ALAAFAAISGKA 470


>gi|330991596|ref|ZP_08315547.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
 gi|329761615|gb|EGG78108.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
          Length = 465

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 152/466 (32%), Positives = 239/466 (51%), Gaps = 37/466 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R+DLR+ DN AL  A   +   VI +++  P      G +AR   +++ +L  ++ 
Sbjct: 8   IMWFRDDLRLADNPALSDAA--ASGPVICLYVHDPAL--APGSAARW--WLHGALTALED 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L  +G       C     + + +     Q     + +NR+Y     + D  ++  L+  
Sbjct: 62  DLRARGGRL----CIMAGPAWQCVLRLARQAGAGAVVWNRRYGGAARQVDARIKLALKDM 117

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---------IQNLVQADLRSLPVP 180
            V  +S   ++L  P  +       ++VYTP+ +A+         +         +LP P
Sbjct: 118 GVQARSHRGNMLHEPWQVRTRQGAPFRVYTPWWRAVRAMGAPLPPLPVPAALGFAALP-P 176

Query: 181 AIRLTGPVTPSNI---PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           A+   G V+ S +   P   D+  Q +   +  GEQ A   L  F   ++  Y   RD+P
Sbjct: 177 AVE-DGLVSLSALGLQPTRPDW-AQGLRDTWQPGEQAAHARLATFMATRLPGYARLRDLP 234

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           A   TS LSP L  G +SPRQ W+ ++ +  VD      +    +L+E+ WR+F    + 
Sbjct: 235 ARPATSGLSPCLRFGHISPRQIWHAVEAQGDVD------ADGMCFLSEVGWRDFAHATLF 288

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P +   +   P  +++ W  D   L+AW+QG TG+PI+DA MR+L   GWMHNR+RMI
Sbjct: 289 DCPDMAT-RSLRPEYDRMPWRTDPAGLRAWQQGRTGYPIVDAGMRELWHTGWMHNRVRMI 347

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFNP +QG+
Sbjct: 348 VASFLTKHLLLDWRAGERWFADTLVDADGASNPFNWQWVAGCGLDAAPYFRIFNPVLQGE 407

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           +FDP+G ++R W+PE+ ++  + +H P  +     +   YP P+VD
Sbjct: 408 KFDPEGDYVRRWVPEIAHLAGRAVHTPWKF---PHVHRGYPAPVVD 450


>gi|84502965|ref|ZP_01001067.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
 gi|84388710|gb|EAQ01581.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
          Length = 472

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 158/480 (32%), Positives = 236/480 (49%), Gaps = 38/480 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR++D+ AL  A   +   VI VFI         G+ A     +   L   + 
Sbjct: 9   LLWFRRDLRLSDHPALTQAA--ARGPVIPVFIHDDSV---AGLGAAPKWRLGEGLAVFRD 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+++G      +      + E L+    +   T +++ R Y+ + + RD  ++  L  R
Sbjct: 64  ALAERGARLILRRGP----AREVLERLIDETGATAVYWTRAYDPDAIERDSRVKAALADR 119

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                SF   ++  P  +     +MY+VY+P+ +A+    V   LR     A  L+ P  
Sbjct: 120 GTEACSFPGHLIFEPWEVETQQGKMYQVYSPYWRAVKDREVDRPLR-----APDLSAPSK 174

Query: 190 PSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +     D+   A        +      GE  A   L  F  +++  Y E+RD+PA   
Sbjct: 175 WPDSEALEDWHLGAGMNRGAAIVARHCTPGEGAAQSRLGAFSAQRLEDYKERRDMPAEDA 234

Query: 242 TSQLSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           TS +S YL++G +SPRQ W+  L+ E      + KSGA  +  E++WREF  HLM   P 
Sbjct: 235 TSDMSQYLTLGEISPRQLWHAALRGE-----AEGKSGAEHFRKEVVWREFAYHLMYHTPR 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +        W       +DS  ++ WKQG TG   +DAAMR++   G MHNR RM+ AS+
Sbjct: 290 LLDENWREGWEAFCWSEEDSEAVRRWKQGRTGVRFVDAAMREMYVTGRMHNRSRMVVASY 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K +LV WRIG+++F   L+D D ASN+ GWQW A  G D+ PYFR+FNP  Q ++FD 
Sbjct: 350 LTKHMLVHWRIGQKWFQDCLIDWDPASNSMGWQWVAGCGPDASPYFRVFNPDTQLEKFDR 409

Query: 421 QGTFIRHWLPELNNVPTQ----YIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            G ++  WL E +  P+     Y  A P SW L   D   +YP P+VD K+     L  Y
Sbjct: 410 DGRYVARWLAECSRSPSDTALSYFDAIPESWGLSPED---DYPEPVVDLKEGRRRALAAY 466


>gi|260062651|ref|YP_003195731.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
           HTCC2501]
 gi|88784218|gb|EAR15388.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
           HTCC2501]
          Length = 434

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 154/477 (32%), Positives = 229/477 (48%), Gaps = 51/477 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             SV++ W R DLR+ DN+ L  A   +   V+ +FI   E          +  F++  L
Sbjct: 2   GKSVNIFWFRRDLRLEDNRGLCEAL-GAGRPVLPIFIFDSEILDGLPADDPRVTFLHDRL 60

Query: 66  LQVQKSL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            +++  +  +Q   +  YH        +E          V ++F NR YE     RD+ +
Sbjct: 61  QELRSRMQENQGSSLAIYHG-----KPLEIFKELASDWDVGQVFTNRDYEPYARDRDEQV 115

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            + L  + I   +F D V+     ++      Y VYTP+ K   Q      L +    A 
Sbjct: 116 GQWLSEQGIEFHTFKDQVIFEKDEVVKDDGDPYVVYTPYMKKWKQVFRDTPLATFD-SAG 174

Query: 183 RLTGPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           +L   +  S +P     D+ F+      P+ + +    L       +  Y + R+ PA +
Sbjct: 175 QLGNLIAHSRLPNPDLADFGFER--SAIPVPDYDMGGKL-------IDAYEDNRNYPARE 225

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS+L P+L  G +S RQ   +  E          S   ++ NELIWREF+  ++  +P 
Sbjct: 226 GTSRLGPHLRFGTISIRQALGKALE----------SSNETFWNELIWREFFMQILWHFPR 275

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               + F    ++I W  D    + W++G TGF ++DA MRQLN  G+MHNR+RM+TASF
Sbjct: 276 TVH-EAFRKEYDRIAWRNDESEFEKWREGRTGFALVDAGMRQLNASGYMHNRVRMLTASF 334

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LL+DWR GE YF  +LLD ++ASN G WQWAA +G D+ PYFRIFNP  Q  +FD 
Sbjct: 335 LCKHLLIDWRWGEAYFAEKLLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDK 394

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             ++IR W+PE                     + +YP  +VDHK A    L  Y AA
Sbjct: 395 DKSYIREWIPEYG-------------------TEDYPEKMVDHKAARERCLKTYKAA 432


>gi|87123064|ref|ZP_01078915.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
 gi|86168784|gb|EAQ70040.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
          Length = 493

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 161/487 (33%), Positives = 228/487 (46%), Gaps = 47/487 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH----FIYASLL 66
           L W R DLR+ DN  L AA     A V  V +  P            +     F+  SL+
Sbjct: 7   LFWHRRDLRLADNTGLQAAVGLGPA-VTGVVVLDPAILSPPPHLPPMAPARLWFLVESLI 65

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           ++Q+   + G   +V      +        LD+         + ++R  E     RD+ +
Sbjct: 66  ELQQRWREAGSRLLVVAGDPATVLPRLASLLDA-------PAVVWSRDVEPYARERDRAV 118

Query: 124 EKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA- 181
            + LQ        D D +L+ P  +       Y+VY PF +     + +++  ++  P+ 
Sbjct: 119 ARALQADGRKVLVDWDQLLVNPELLKTGGGDPYRVYGPFLRNWRGQVERSEPSTVASPSG 178

Query: 182 ---------------------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
                                + L G     ++     +    + P  P GE  A   L 
Sbjct: 179 LIDLEPETLALISSGEGELGRLCLEGQRQLEHLRAAHGFAGIELCPCRP-GEAAAAEQLA 237

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            F    +  Y   R++P++ GTS LS  LS+G LSPRQ W   +E    +    +  A +
Sbjct: 238 TFVAGPLMAYEPDRNVPSVVGTSSLSAALSVGTLSPRQAWCAAQEVKQCVRSDEQLQAIT 297

Query: 281 -WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
            W  EL WREFY+  +  +P +  G P+ P   +  W  +      WK G TG PIIDAA
Sbjct: 298 VWEQELGWREFYQQALFHFPELADG-PYRPQWRRFPWENNDDWFDFWKDGQTGMPIIDAA 356

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQLN  GWMHNR RMI AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G
Sbjct: 357 MRQLNQTGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSG 416

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPL 458
            D  P  RIFNP  Q  +FD +G +IR WLPEL +V T   +      L++      YP 
Sbjct: 417 MDPKP-LRIFNPATQASKFDAEGEYIRRWLPELRHVNTNDLLSGEIPALERR----GYPE 471

Query: 459 PIVDHKK 465
           P+V+HK 
Sbjct: 472 PLVNHKS 478


>gi|226308066|ref|YP_002768026.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis PR4]
 gi|226187183|dbj|BAH35287.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis PR4]
          Length = 444

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 146/471 (30%), Positives = 229/471 (48%), Gaps = 31/471 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ D   L AA  ++  + + +F+         G S RQ   ++A+L  +  
Sbjct: 1   MVWFRRDLRVGDLPILSAAS-DAGGRTLGLFVLDENLLGPAG-SPRQDQ-LFANLTALDH 57

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  K +V +        D  + +          ++  +  Y     RRD  + ++++  
Sbjct: 58  QLDGKLMVVR-------GDPADVVPRVAESVGAEEVHISADYGPYGRRRDAAVAEQVELI 110

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                +     + PG +       YKV+TP+ +  +++  +    S     +R   P   
Sbjct: 111 ATGSPY----AVAPGRVTKADGDPYKVFTPYFRQWMEHGWRGPA-STDAQTVRWFDPSDK 165

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
              PR    P  +      +GE  AL   +++C+  +  Y ++R+ P +  TS++S  L 
Sbjct: 166 EGGPRRVSIPAPSASVSDFVGEVGALEQWKEYCENDLDRYDDERNRPDLDTTSRMSIPLK 225

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G + PR           DL  +   GA ++  +L WR+FY  ++   P     K +   
Sbjct: 226 YGTIHPRTM-------LADLSKRLGDGAQAYRRQLAWRDFYADILFQRPDSAR-KNYDDK 277

Query: 311 TEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            +++  +          AW +G TGFPI+DA MRQL    WMHNR+RMI ASFLVKDL +
Sbjct: 278 FDRLRHDGGVDADAAFTAWCEGKTGFPIVDAGMRQLAAENWMHNRVRMIVASFLVKDLHI 337

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W  G  +FMS L+DGDLASN  GWQW A +G D+ P+FR+FNP  QG++FDP GT++R 
Sbjct: 338 PWWRGARFFMSHLVDGDLASNQHGWQWTAGSGTDASPFFRVFNPITQGEKFDPDGTYVRR 397

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           W+PEL +VP + +H+      K    ++YP PIVDH       L +Y   K
Sbjct: 398 WVPELRDVPGKAVHSL-----KAMRPVDYPDPIVDHAHEREEALRRYGEIK 443


>gi|149279055|ref|ZP_01885189.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
 gi|149230334|gb|EDM35719.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
          Length = 433

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 149/472 (31%), Positives = 225/472 (47%), Gaps = 47/472 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + + WLR DLR+ D+ ALY A       V+ +FI       +  +   +  FIY ++ +
Sbjct: 4   EISICWLRRDLRLEDHTALYHALKGPHP-VLLLFIFDTNILSKLPVKDARVTFIYNTIKE 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L+Q          S      E ++ Y    +V  +F N  YE     RD  L + L
Sbjct: 63  LNEQLAQHDSSIVVKHGSPEKAWTELMEEY----QVKSVFTNHDYEPYAAERDDSLAEFL 118

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLT 185
           +   I   ++ D V+     I+    + Y V+TP+ K  ++ L    ++  P+   ++  
Sbjct: 119 RSEHISFHTYKDQVIFEKDEIVKADGKPYTVFTPYYKQWLRKLDDFYIKPYPIKKYLKHL 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   +IP   D  F+A    FP  +             K+  Y + RD P    T+ +
Sbjct: 179 LKIKRQHIPSLSDMGFEASAQKFPSED----------FSRKLDAYEKLRDFPGADATTHI 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
             +L  G +S R    + K +  +           WL+EL WR+FY  ++  +P   +  
Sbjct: 229 GMHLRFGTVSIRHAAAQAKTQQAE----------KWLSELAWRDFYMMILWHFPHT-VNS 277

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P    I+W  +    +AW QG TG+P++DA MRQLN  G+MHNR+RM+ ASFL K L
Sbjct: 278 AFKPAYNNIKWRNNEDEFEAWCQGNTGYPLVDAGMRQLNATGYMHNRVRMVVASFLSKHL 337

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DW+ GE YF  +LLD ++ASN GGWQWA   GND+ PYFR+FNP +Q K+FDP   +I
Sbjct: 338 LIDWKWGETYFAEKLLDYEMASNVGGWQWACGCGNDAAPYFRVFNPELQMKKFDPDFKYI 397

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             WLPE      +  H P               PIV+H  A    L  + AA
Sbjct: 398 DKWLPEYK----KQKHVP---------------PIVEHAFARERILKVFKAA 430


>gi|326403807|ref|YP_004283889.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
 gi|325050669|dbj|BAJ81007.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
          Length = 471

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 160/492 (32%), Positives = 233/492 (47%), Gaps = 39/492 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+WLRNDLR+ DN AL AA    +  V+ VF+  P    + G ++R   +++ SL 
Sbjct: 1   MATTLLWLRNDLRLADNPALAAAIEEGN--VLPVFVLDPAA--ETGGASRW--WLHHSLA 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++   + +G      +     D+   + +   +     +   R +E      D+ +   
Sbjct: 55  ALEADFAARGGRLVLRR----GDAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAA 110

Query: 127 LQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ   I      S L+  P  I      +Y VYTPF +A                  RL 
Sbjct: 111 LQEAGIGFHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIPA---PARLA 167

Query: 186 GPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
               P    R  D+    + P         +  GE  A   L  F  +    Y  QRD+P
Sbjct: 168 AAGDPGG-DRLGDWGLLPVKPDWAGGLRASWTPGEAGARARLDAFLADGFGEYDRQRDLP 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295
            + GTS LSP+L  G ++    W          +  P   A   ++L ELIWREF  +L+
Sbjct: 227 GVAGTSGLSPHLHWGEIAIDAVWR-------AAVAAPGRDAARQTFLKELIWREFAAYLL 279

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P +   +P       + W + +  L AW+ G TG PI+DA MRQL   GWMHNR+RM
Sbjct: 280 WHTPDLAT-RPMKAQFAAMPWRESAADLAAWQHGRTGVPIVDAGMRQLWQTGWMHNRVRM 338

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFLVK LL+ W+ GE +F   L+D D ASN   WQW A +G D+ PYFRIFNP +QG
Sbjct: 339 IVASFLVKHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQG 398

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHH 469
           ++FDP G ++R ++PE+ N+P +Y+HAP    +         L  +YP PIVD  +    
Sbjct: 399 RKFDPDGAYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPIVDLAEGRER 458

Query: 470 TLNQYYAAKKQS 481
            L  + A   ++
Sbjct: 459 ALAAFAAISGKA 470


>gi|114764326|ref|ZP_01443554.1| deoxyribodipyrimidine photolyase [Pelagibaca bermudensis HTCC2601]
 gi|114543274|gb|EAU46291.1| deoxyribodipyrimidine photolyase [Roseovarius sp. HTCC2601]
          Length = 473

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 159/486 (32%), Positives = 235/486 (48%), Gaps = 47/486 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI---SARQSHFIYASLLQ 67
           +VW+R DLR++D+  L+ A   S   VI VFI      R H +    A     +   L  
Sbjct: 8   IVWIRRDLRLSDHATLHEA-GKSGRPVIPVFI------RDHTVDQLGAAPKWRLGLGLGC 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             ++L++KG             + E LD+   +     +++ R Y+   V RD  ++  L
Sbjct: 61  FGEALAEKGSRLILRAGP----AREVLDALIDETGAGAVWWQRAYDPASVERDTAVKSAL 116

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + R I  +SF   +L  P ++       YKVYTPF +A+    V      LP P+ +L  
Sbjct: 117 KDREIDARSFAGHLLFEPWTVETKQGGFYKVYTPFWRAVCDRDVP---EPLPAPS-KLAA 172

Query: 187 PVTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P +        D+            ++P   +GE+ A   L  F   K+  Y + R++ A
Sbjct: 173 PESWPESDALDDWGLGDAMRRGAAVVEPYVQLGERAAQARLGAFTSGKIADYDKGRNLVA 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
             G S LS  L++G +SP QCW+   R K+         K GA +W  EL+WREF  HL+
Sbjct: 233 EDGCSTLSENLALGEISPAQCWHAAMRAKD-------AGKEGAETWAKELVWREFAYHLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
              P +        W     WN+D    +  AWK+  TG P +DAA+R++   G MHNR 
Sbjct: 286 WHTPHLAESNWREEWA-AFPWNEDERRKEVIAWKRARTGIPFVDAALREMYVTGRMHNRA 344

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI AS+L K L+  W+IG ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  
Sbjct: 345 RMIVASYLTKHLMCHWKIGMDWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPIT 404

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACH 468
           Q ++FDP   ++  W+ E  + P +    Y  A P SW    D +  YP PIV  +    
Sbjct: 405 QREKFDPDKVYVDRWIAEGQSNPPKTALSYFDAIPESWAMTPDDA--YPEPIVSAEDGRK 462

Query: 469 HTLNQY 474
             L+ Y
Sbjct: 463 AALDAY 468


>gi|194365340|ref|YP_002027950.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia
           R551-3]
 gi|194348144|gb|ACF51267.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia
           R551-3]
          Length = 471

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 150/446 (33%), Positives = 224/446 (50%), Gaps = 23/446 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV LVW R DLR+ DN AL AA  ++   V+ V+I  P +  +    A    + + SL 
Sbjct: 1   MSVALVWFRRDLRLQDNPALQAAL-DAGHDVVPVYIHAPHEEGEWVPGAASDAWRHRSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G            DS+  L +   Q     +F+NR+YE     RD  +++ 
Sbjct: 60  ALDAYLRSRGSSLVLRSG----DSLATLQALIKQTGAEAVFWNRKYEPATQPRDATIKRT 115

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPA 181
           L+ + I  +S + S+L  P  I     Q YKV+TP+ + ++ +     +QA  ++L   +
Sbjct: 116 LREQGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPKALTAHS 175

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +   G +    +    D+     +   P GE  AL  L  F    +  Y EQRD+P   G
Sbjct: 176 VDSLG-LEELRLAPTLDWDIGFWEHWQP-GEAGALEALSVFEDGALRGYREQRDLPDRVG 233

Query: 242 TSQLSPYLSIGVLSP---RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           TS++SP+L  G ++P         L+    D  I        +L +L WR+F  HL+  +
Sbjct: 234 TSRMSPHLHFGEIAPWRIAHALEGLRSAGTDADID------GYLRQLGWRDFAYHLLHHF 287

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           P     +   P  ++  W   S   L  W++G TG PI+DA +R+L   G+MHNR+RMI 
Sbjct: 288 PKTPT-ENLNPRFDRFPWATPSAAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIV 346

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+L K L   W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++
Sbjct: 347 ASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEK 406

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAP 443
           FDPQ  +I  W+PEL  +P +   AP
Sbjct: 407 FDPQARYISRWVPELAALPVKARFAP 432


>gi|88808070|ref|ZP_01123581.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
 gi|88788109|gb|EAR19265.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
          Length = 492

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 171/496 (34%), Positives = 236/496 (47%), Gaps = 57/496 (11%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE----QWRQHGISARQSHFI 61
           A +  L W R DLR+ DN  L AA     A V  V++  P       +   ++  +  F+
Sbjct: 2   ASARTLFWHRRDLRLADNTGLQAAVALGPA-VTGVYVLDPSIITPPPQLPPMAPARLWFL 60

Query: 62  YASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
             SL+++Q+   + G   +V Q    +        LDS       + + ++R  E     
Sbjct: 61  VESLIELQERWREAGSRLLVLQGDPLTLLPQLAALLDS-------STVVWSRDVEPYARE 113

Query: 119 RDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRK---ALIQNL----- 169
           RD+ + K LQ        D D +L+ P  +       Y+VY PF +     ++ L     
Sbjct: 114 RDRGVAKALQADGRQVLVDWDQLLVAPELLKTGNGDPYRVYGPFLRNWRGQVERLRPSTV 173

Query: 170 -VQADLRSLPVP---AIRLTGPVTPSNIPRFF------------DYPFQAID--PMFPIG 211
               DL+ L      AIR     T + + R +            ++ F  +D  P  P G
Sbjct: 174 AAPTDLQDLTAEQQQAIR----STETALGRLWADGQQALQRLQTEHGFAGMDLCPCRP-G 228

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
           E  A+  L  F    +  Y   R+ P   GTS LS  LS+G LSPRQ W    +   DL 
Sbjct: 229 EVAAVDQLAVFADGPLLGYEPDRNFPGTAGTSGLSAALSVGTLSPRQAWC-AAQAAKDLA 287

Query: 272 --IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
              + +     W  EL WREFY+  +  +P +  G P+     +  W  +      WK G
Sbjct: 288 RSDEQRQAIAVWEQELAWREFYQQALFHFPELADG-PYREQWRRFPWENNEDWFDFWKDG 346

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG PIIDAAMRQL   GWMHNR RMI ASFLVKDL+ DWR GE  FM   +DGDLA+NN
Sbjct: 347 QTGMPIIDAAMRQLQQSGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANN 406

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLD 448
           GGWQW+AS+G D  P  RIFNP  Q  +FD  G +IR W+PEL +V T+  +      L+
Sbjct: 407 GGWQWSASSGMDPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVSTKDLLSGEIGALE 465

Query: 449 KNDLSLNYPLPIVDHK 464
           +      YP P+V+HK
Sbjct: 466 RR----GYPEPLVNHK 477


>gi|269794388|ref|YP_003313843.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM
           10542]
 gi|269096573|gb|ACZ21009.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM
           10542]
          Length = 450

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 153/471 (32%), Positives = 230/471 (48%), Gaps = 41/471 (8%)

Query: 13  WLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W R DLR+ DN AL +A   + A   +V+ +F+     W   G   R   ++ ASL  + 
Sbjct: 6   WFRRDLRLADNPALNSAWEQAQADGSQVVGLFVLDDRLWGPSGSPRRD--YLLASLRALD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           +S+  + +V +           E L +   +     +     +E     RD+ +E  L +
Sbjct: 64  ESMGGRLVVRRGAPT-------EVLPAVAREVGARTVHVAESFEPFGRARDEEVETALAE 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V  +    +  + PG +L      Y+V+TPFR A + +           PA +  G V
Sbjct: 117 DDVELRRTGSAYAVSPGRVLTRTGTPYRVFTPFRTAWLDH-------GWCGPA-QDPGEV 168

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             + +P   D P    +P+ P GE+ AL    +F  E V  Y + R+ P +  TS+LS  
Sbjct: 169 DWAELPSE-DLPEADGEPLRPAGEEAALERWHEFL-EDVAGYDDDRNRPDLDLTSRLSVP 226

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP-----SVCM 303
           L  G + PR           DL      GA S+ +EL WREF+  ++   P     S+  
Sbjct: 227 LKWGEIHPRTL-------LADLKNLRDEGAASFRSELAWREFHADVLFHSPEAATLSIRE 279

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             P   WT + + ++     +AW +G TG+P++DA MRQL   GWMH R+RM+  SFLVK
Sbjct: 280 VMPDDAWTPRSQADR---WFEAWTEGRTGYPMVDAGMRQLLAEGWMHGRVRMLVGSFLVK 336

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W+ G  +FM  LLD D + N   WQW A TG D+ PYFRIFNP  QG +FDP G 
Sbjct: 337 DLHIPWQRGARHFMQHLLDADRSQNQLNWQWVAGTGLDASPYFRIFNPVTQGLKFDPDGE 396

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           ++R W+PEL  +P + +H P       +   +YP  +VDH +    +L+ Y
Sbjct: 397 YVRRWVPELRGIPGKAVHEPWKLPTPPE---DYPDQLVDHGRERKESLDAY 444


>gi|294665668|ref|ZP_06730944.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604563|gb|EFF47938.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 484

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 166/488 (34%), Positives = 240/488 (49%), Gaps = 33/488 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIYA 63
           MS  +VW R DLR+ DN AL AA  ++    I ++I  P +   W     S    H   A
Sbjct: 13  MSYAIVWFRRDLRLEDNPALRAAL-DAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLA 71

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L    ++L   G+V +        +S + LD    Q     +++NR+YE     RD  +
Sbjct: 72  ALDGALRALG-SGLVIR------VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 124

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADL---RSLP 178
           ++ L+ R I  +S + ++L  P  +       YKV+TPF R A  Q  + A +   RSLP
Sbjct: 125 KRDLRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNAPTQLQLPAAMGAPRSLP 184

Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            +PA   T  +    +     +  Q     +  GE  A  +L  F    +  Y E RD P
Sbjct: 185 PLPASLKTDALDTLQLVPGVQWD-QGFWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRP 243

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM 295
              GTSQLSP+L  G ++P +  + L+          ++GA    ++ +L WR+F  HL+
Sbjct: 244 DRVGTSQLSPHLHFGEIAPWRIASTLETHRT-----ARNGAEIDGYVRQLGWRDFAYHLL 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             +P     +   P     +W   D   LQAW++G TG PI+DA MRQL   GWMHNR+R
Sbjct: 299 HHFPDTT-NQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVR 357

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q
Sbjct: 358 MIVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQ 417

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP----LPIVDHKKACHHT 470
            ++FDPQ  +I  W+PEL  +  +   AP  WL    L+   P     PI+   +     
Sbjct: 418 AEKFDPQAAYITRWVPELGKLAVKERFAP--WLHPLSLARVAPQYRRAPIIGLAEGRDAA 475

Query: 471 LNQYYAAK 478
           L  Y  ++
Sbjct: 476 LAAYAKSR 483


>gi|254485504|ref|ZP_05098709.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
 gi|214042373|gb|EEB83011.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
          Length = 465

 Score =  229 bits (583), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 161/480 (33%), Positives = 228/480 (47%), Gaps = 37/480 (7%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+TD+ AL AA       VI VFI         G+ A     +   +     +
Sbjct: 1   MWFRRDLRLTDHPALSAAAQTG-RPVIPVFIRDDAV---AGLGAAPKWRLGLGIGAFDDA 56

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR- 130
           L +K       +     D++E L     +     ++++R Y+     RD  +++ L+   
Sbjct: 57  LREKSSRLILRKG----DALEVLQDLIKETGAGAVYWSRLYDPQATARDADIKEALKGAD 112

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V  +SF   ++  P ++       YKVYTPF  A+    V A L S P     LT P T 
Sbjct: 113 VEARSFGGHLMFEPWTVETKTGGNYKVYTPFWNAVKNTGVDAPL-SAPK---NLTAPDTW 168

Query: 191 SNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                  ++            + P   +GE++A   L  F    V  Y   RD+P + GT
Sbjct: 169 PRSDDLAEWTMGGAMQRGADVVRPFVQLGEKSAQSRLGAFMAHGVADYKANRDLPGVDGT 228

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS  L++G +SP QCW+  +    D     K GA ++L EL+WREF  HLM   P + 
Sbjct: 229 SNLSENLALGEISPHQCWHAGQRALHD----GKQGAETFLKELVWREFAYHLMHHSPRIL 284

Query: 303 MGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  W +   WN+D  L  ++AWK G TG P +DAAMR+L   G MHNR RMI AS+
Sbjct: 285 TDNWREEW-QAFPWNEDERLAEVKAWKHGRTGEPFVDAAMRELYVTGRMHNRGRMIVASY 343

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L+  WRIG+++F   L+D D ASN  GWQWAA +G D+ PYFR+FNP  Q  +FD 
Sbjct: 344 LTKHLMCHWRIGQKWFEDCLIDWDPASNAMGWQWAAGSGPDATPYFRVFNPATQLDKFDK 403

Query: 421 QGTFIRHWLPELNNVP----TQYIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474
              +   W+ E    P     ++  A P  W L  +D   +YP  IV   +     L  Y
Sbjct: 404 NRDYTSRWIAEGRANPHADALRFFDAIPKRWNLSASD---DYPDRIVALDEGRERALENY 460


>gi|110638357|ref|YP_678566.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281038|gb|ABG59224.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme)
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 433

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 157/478 (32%), Positives = 227/478 (47%), Gaps = 77/478 (16%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQSHFIYASL 65
            V + W R DLR+TDN  L+ A   S   V+ VFI         +H   AR   FI+ ++
Sbjct: 3   EVVVFWFRRDLRLTDNAGLFQAL-TSGYAVLPVFIFDINILNALEHKNDAR-VEFIHDTI 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++  L +     + +  +      E  +    +  V  ++ N  YE   ++RD  +  
Sbjct: 61  QSLKNELQKIHSDMEVYHAT----PAEAFEQLVKKYTVKAIYTNTDYEPAAIKRDNEISD 116

Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------------- 171
              Q ++  KSF D V+     IL      Y+VYTP++   ++ L +             
Sbjct: 117 WAAQQQIAFKSFKDQVIFEKNEILTDTGAPYRVYTPYKNKWLKKLTENPVTHSPSEKHTD 176

Query: 172 ADLRSLPVPAIRLTG-PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           A LR    P + L     TPS+I          I P         L  LRK  +E    Y
Sbjct: 177 AFLRMEAKPIVTLKQLGFTPSSI---------QIPP---------LETLRKTIQE----Y 214

Query: 231 VEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            + RD P ++ GTS L  +   G +S R+            ++K      +WL+ELIWRE
Sbjct: 215 DKTRDYPYLEHGTSLLGIHFRFGTISIREK-----------VVKALPLNATWLSELIWRE 263

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+  L+  +P V   + F     ++EW       + W  G TG+P++DA MR+LNT G M
Sbjct: 264 FFMQLLFHFPHVVT-ESFQSKFNRLEWRYSQADFEKWCTGKTGYPLVDAGMRELNTTGHM 322

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM+ ASFL K L +DWR GE YF  +LLD DL++NNG WQWAA TG D+ PYFRIF
Sbjct: 323 HNRVRMVVASFLTKHLFIDWRWGEAYFAQKLLDYDLSANNGNWQWAAGTGADAQPYFRIF 382

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467
           NP  Q ++FDP   +I+ W+PE                     + +Y  PI++HKKA 
Sbjct: 383 NPISQQEKFDPDFIYIKKWVPEFG-------------------TSSYIEPIIEHKKAT 421


>gi|149372178|ref|ZP_01891448.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
           SCB49]
 gi|149354945|gb|EDM43507.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
           SCB49]
          Length = 435

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 148/472 (31%), Positives = 223/472 (47%), Gaps = 47/472 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++ W R DLR+ DN   + A H     V+ +FI   E   +      +  FI+ +L ++
Sbjct: 5   VNVFWFRRDLRLDDNLGFFKALHGK-YPVLPIFIFDSEILNELPKDDARVTFIFNTLQKM 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           + +L +KG     +Q    D   + +  + +Q  +T    N  YE+    RD+ ++  L 
Sbjct: 64  RDALQEKGSSLAMYQGKPLDIYKQLIKDFDVQNVIT----NHDYEVYAQDRDEEIKTFLA 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q  +   +F D V+     ++      Y VYTP++        +     +   +  L   
Sbjct: 120 QKDIDFYTFKDQVIFEKNEVVKDNGDPYVVYTPYKNKWKAAFNEDKHLKIHYTSQHLDAL 179

Query: 188 VTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           +  S +P     D  F       P     +  +     +E    Y   R+ PA+ GTS L
Sbjct: 180 IEHSRLPNLSLSDIGFTKSSIEVP-----SYDVRPTLIQE----YENTRNFPAVDGTSHL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
            P+L  G +S R+   +         I  K+  F  +NELIWREF+  ++  +P      
Sbjct: 231 GPHLRFGTVSVRKMMRKA--------ISEKNETF--MNELIWREFFMQILWHFPK-TQHN 279

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    ++I W  +    + WK+G TG+ ++DA MR+LN  G+MHNR+RM+ ASFL K L
Sbjct: 280 AFRSKYDRITWRNNEEEFEKWKKGETGYLLVDAGMRELNKTGYMHNRVRMLVASFLCKHL 339

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +LLD + +SN G WQWAA +G D+ PYFRIFNP  Q  +FD   T+I
Sbjct: 340 LIDWRWGEAYFAEKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPITQVDKFDKDKTYI 399

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           R W+PE                DK      YP  +VDHK+A    L  Y  A
Sbjct: 400 RKWIPEFET-------------DK------YPNKMVDHKEARERCLKVYKEA 432


>gi|150025093|ref|YP_001295919.1| deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771634|emb|CAL43108.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
           psychrophilum JIP02/86]
          Length = 428

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 157/474 (33%), Positives = 228/474 (48%), Gaps = 53/474 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++ W R DLR+ DN  L+ A  NSD  ++ +FI       Q      +  FI+  L ++
Sbjct: 1   MNIFWFRRDLRLDDNVGLFHAL-NSDQTILPIFIFDYNILSQLSKDDARVTFIHELLSKM 59

Query: 69  QKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           QK L +KG  +   Y + S      E  +    + +V  ++ N  YE    +RDK L + 
Sbjct: 60  QKKLQEKGKSLAVFYGKPS------EIFEKLISENKVKTIYTNHDYEPYARKRDKELNQL 113

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
              H +   +  D V+     +     + Y VYTP+     +   Q  L++       L 
Sbjct: 114 FANHNIQFLTSKDQVIFEKSEVTKDDGKPYIVYTPYTNKWKEKFKQTTLKNYNSENY-LD 172

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF--CKEKVYYYVEQRDIPAIQGTS 243
             VT         YPF +++    IG + +   +  +   +  +  Y   R+ P++  TS
Sbjct: 173 KIVTHP-------YPFLSLES---IGFETSKITVASYDISENLIDNYEATRNFPSLNKTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            L  YL  G +S R+         +   IK K+  F    ELIWREF+  ++  +P   +
Sbjct: 223 FLGIYLRFGAVSVRKM--------MQEAIKSKNETF--FKELIWREFFMQILWHFPH-TI 271

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            K F    + I W     L Q W QG TG+P +DA MR+LN  G MHNR+RMI ASFL K
Sbjct: 272 NKSFKEKYDAIIWENKEDLFQKWCQGKTGYPFVDAGMRELNATGHMHNRVRMIVASFLCK 331

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF ++LLD + +SN G WQWAA +G D+ PYFRIFNPT Q K+FD    
Sbjct: 332 HLLIDWRWGETYFATKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLK 391

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ W+PEL                    + +YP PIV+HK A    L  Y  A
Sbjct: 392 YIKKWIPELQ-------------------TSHYPEPIVEHKFARERCLKVYKEA 426


>gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5]
 gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
           palustris BisB5]
          Length = 487

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 159/491 (32%), Positives = 238/491 (48%), Gaps = 34/491 (6%)

Query: 11  LVWLRNDLRITDNKALY-AACHNSDAKVIAVFIATPEQWRQ---HGISARQSHFIYASLL 66
           +VW R+DLR++D+ AL+ AA        I VF     Q R      +      ++  SL 
Sbjct: 10  IVWFRDDLRLSDHPALHQAAASGGPLICIYVFDEDSAQLRSPQARPLGGASRWWLAQSLR 69

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DKLLE 124
            +  SL ++G      +      +   +     Q   + + +N + EI   R   D L E
Sbjct: 70  ALAASLEKRGARLILRRGP----AAAIIAELARQVDASAVHWN-EIEIAPHRAVADDLAE 124

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +        +L  P  +     +  +V+TPF + ++   +    + LP P   L
Sbjct: 125 ALSVAGIDHHRHRGDLLASPAEVRTKEGRGLRVFTPFWRRVLG--LGDPPKLLPAPKT-L 181

Query: 185 TGPVTPSNI--------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           +    PS          P   D+     +   P GE  A   L  F  + +  Y E RD 
Sbjct: 182 SAAQGPSGDQLDSWMLEPTEPDWAGGLRESWTP-GEGAAQDNLTAFL-DALPGYTEGRDR 239

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLM 295
           P    TS+LSP+L  G +SPRQ W   +  F        +G    +L+EL WREF RHL+
Sbjct: 240 PDCAATSRLSPHLRFGEISPRQVWYAAR--FAAAERPAIAGDIDKFLSELGWREFCRHLL 297

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +   +      +   W  D+  L AW++G TG+PI+DA MR+L   G MHNR+RM
Sbjct: 298 HDHPDLAE-RNLQASFDAFPWITDAAALHAWQRGCTGYPIVDAGMRELWHTGVMHNRVRM 356

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFLVK LL+DWR GE++F   L+D D  SN   WQW A +G D+ PYFR+FNP +QG
Sbjct: 357 VVASFLVKHLLIDWRCGEQWFWDTLVDADAGSNPANWQWVAGSGADAAPYFRVFNPILQG 416

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIVDHKKACHH 469
           ++FDP G ++R W+PEL ++P ++IH P +     L    ++L  NYP PI+DH+     
Sbjct: 417 EKFDPAGDYVRRWVPELASLPAKFIHQPWTATPFELAAAGVTLGGNYPEPIIDHRVGRER 476

Query: 470 TLNQYYAAKKQ 480
            L  Y   ++ 
Sbjct: 477 ALAAYAKTRQH 487


>gi|300774220|ref|ZP_07084087.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300758899|gb|EFK55728.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 437

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 162/482 (33%), Positives = 241/482 (50%), Gaps = 51/482 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIY 62
           +A+   + W R DLR+ DN AL+ A  NS+A V  VFI  +T          AR + FIY
Sbjct: 2   SAVPTVIFWFRRDLRLQDNHALFRAL-NSEAAVQPVFIFDSTILTRLDDPADARVT-FIY 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L  +Q+ L   G   + +     + +  W + Y  +   T ++ N  YE   + RD L
Sbjct: 60  QQLQLLQEQLKPYGSSIRTYYG---EPATVWEEIYE-EYTPTAVYVNSDYEPAAITRDLL 115

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +   LQ ++V   +F D V+     I+ +    Y VYTP++   +  L +     LP+P+
Sbjct: 116 VRGILQQYKVDFNTFKDQVIFEKAEIVKNDGLPYTVYTPYKNKWLTTLEE----QLPLPS 171

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                  T  N+ +       A+  +  +G   + +    K     +  Y + RDIP ++
Sbjct: 172 ------YTSENLLKNLRQASYALPSLQDLGFSLSTIPFPEKTFFTAIADYADTRDIPGLE 225

Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS L  +L  G +S R+   R             S   ++L+ELIWREF+   +  +P
Sbjct: 226 NGTSHLGIHLRFGTISIRKLVERAY----------PSQNKTYLHELIWREFFMMCLWHFP 275

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              +   +    + I W  +    +AW  G TG+P++DA MR+LNT G+MHNR+RM+TAS
Sbjct: 276 HT-VNHAYYSKYDHIRWENNVAHFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTAS 334

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DWR GE YF  +LLD D ++N G WQWAA  G D+ PYFRIFNPT+Q K+FD
Sbjct: 335 FLCKHLLIDWRWGEAYFAQKLLDYDQSANIGNWQWAAGCGMDAAPYFRIFNPTLQTKKFD 394

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           PQ  +I+ W+PE  +                    +YP PIV+H  A    L +Y A  +
Sbjct: 395 PQFVYIKKWVPEFQD-------------------FSYPPPIVEHAWARDRALARYKAGFE 435

Query: 480 QS 481
            S
Sbjct: 436 HS 437


>gi|262201249|ref|YP_003272457.1| deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247]
 gi|262084596|gb|ACY20564.1| Deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247]
          Length = 434

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 156/484 (32%), Positives = 224/484 (46%), Gaps = 65/484 (13%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A    ++WLR DLR+ D   L AA  N   +V+  F+  P   +  G   R+  F++ SL
Sbjct: 2   ADPASILWLRRDLRLGDLPPLSAAAAN--GRVLVCFVVDPRLEKSSG--ERRLAFLFDSL 57

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++   L  + +V               +D+  +        + R       RRD  + +
Sbjct: 58  RELDTKLGGRLLVVSGRPDVEIPRLASAVDAGSVHVSEDFSPFGR-------RRDAAVAE 110

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-------NLVQADLRSLP 178
            L   +  +S     L+ PG I       YKV+TP+ +           +    DL +L 
Sbjct: 111 ALGE-IPLESVGSPYLVSPGRITKSDGDPYKVFTPYFRQWCDHGWRKPASTAAEDLNALD 169

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              IR +G +     P   D          P GE+ A     +F  + +  Y   R+ P 
Sbjct: 170 PGDIRRSGRIRIPAAPVKLD---------LPAGEEAARERWSEFVVDDLDDYESGRNRPD 220

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +S++S YL  G + PR           DL  +  S A ++L EL +R+FY  ++  +
Sbjct: 221 LDVSSRMSAYLKFGNIHPRTM-------AADLDFRNPSAA-AYLRELAFRDFYADVLYHW 272

Query: 299 PSVCMGKPFIPWT---EKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           P          W    + I+ + D        AW+ G TGFPI+DA MRQL  IG+MHNR
Sbjct: 273 PESAWHN----WNRGFDDIDLDTDKQAYARFDAWRAGRTGFPIVDAGMRQLAAIGFMHNR 328

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMITASFLVKDL + W  G  +F+ QL+DGD+ASN  GWQWAA TG D+ PYFR+FNPT
Sbjct: 329 VRMITASFLVKDLHLPWWWGARWFLDQLVDGDMASNQHGWQWAAGTGTDAAPYFRVFNPT 388

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            Q  +FDP G +IR W+PE                     + +YP PIVDHK      L 
Sbjct: 389 TQADKFDPDGEYIRRWIPEYG-------------------TDDYPQPIVDHKAEREEALR 429

Query: 473 QYYA 476
           +Y A
Sbjct: 430 RYRA 433


>gi|254797170|ref|YP_003082010.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
           Illinois]
 gi|254590408|gb|ACT69770.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
           Illinois]
          Length = 469

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 147/450 (32%), Positives = 229/450 (50%), Gaps = 40/450 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--RQHGISARQSHFIYASLL 66
           + +VW R D R  DN AL+ A       +I V+I        R+ G +AR   +I  SL+
Sbjct: 6   IAVVWFRKDFRTDDNPALFEATKIRS--IIPVYIIDENNCSIRKPGKAARI--WIAESLI 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL     ++         ++I  L +   + +   L++N  Y+  + + D+ +   
Sbjct: 62  DLNKSLDHHLKIYS-------GNTITILKTLLSRYKAEALYWNTTYDPEQDKYDEQIRTE 114

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +      +I ++F+  +L  P  +       Y+++T F+  +++  ++        P IR
Sbjct: 115 ILKDHPNIIIRNFNARLLWEPSELRKKNGDTYRLFTAFKNKVMEEKLEPRFPIPSPPKIR 174

Query: 184 LT--------GPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                       VTP  I +  D+ F Q I   + I EQ+A  +L++F  +K+  Y   R
Sbjct: 175 YCKEINIPELASVTPEKIIKDKDHCFEQGIYKQWKISEQDAHVLLQEFVDKKLDNYHIDR 234

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P   GTS LSPY++ G +SP + W      F  +   P+S  F  L EL+WREF  ++
Sbjct: 235 DYPGKNGTSTLSPYINFGQISPNRIW------FALVRFLPQSIQF--LTELLWREFAYNI 286

Query: 295 MAFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +   P   S  + + F    +   W  D    + W +G TG+PI+DA +R+L + G+MHN
Sbjct: 287 LNTNPELGSQNLQQKF----DYFPWENDKQKFKLWSRGETGYPIVDAGIRELLSTGYMHN 342

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMI  SFL K+LL+ W+ GEE+F   L+D D ASN   WQW A +G DSVPYFRIF+P
Sbjct: 343 RVRMIVGSFLTKNLLIHWKYGEEFFWEYLVDADPASNTFNWQWIAGSGADSVPYFRIFSP 402

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           T Q K+FDPQ  +   WLPE  +     +H
Sbjct: 403 TTQTKKFDPQLQYSDKWLPEYRSTCFTPVH 432


>gi|254465900|ref|ZP_05079311.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
 gi|206686808|gb|EDZ47290.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
          Length = 474

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 159/492 (32%), Positives = 238/492 (48%), Gaps = 52/492 (10%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W+R DLR+ DN AL AA   S A V+ V+I   +      + A     +   L    + L
Sbjct: 10  WIRRDLRLCDNPALTAAA-ESGAPVLPVYILDEQD---EALGAAPKFRLGLGLDHFGQEL 65

Query: 73  SQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++ G   I+ +        D IE       +     + ++R Y+   +RRD  +++ L+ 
Sbjct: 66  AKAGSCLILRRGKALRVLQDLIE-------ETGAGAVHWSRLYDPQAIRRDSEIKQTLKE 118

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + V  KS    +L  P ++   A  MYKVYTPF KA+    V +    LP P  ++  P 
Sbjct: 119 QGVAVKSHGGRLLFEPWTVETKAGGMYKVYTPFWKAVRSRDVDS---LLPAPG-KIAAPD 174

Query: 189 TPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                    D+   A        +     +GE  AL  L  F ++ V  Y  +RD PA  
Sbjct: 175 NWPASEDLADWRMAAAMRRGADVVARYCRVGETAALERLETFLEDSVDAYKARRDYPAED 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS LS  L+ G +SP + W++        + +   GA  +L E++WREF  HLM   P 
Sbjct: 235 ATSGLSENLAWGEISPHRMWHQGSA----AMERGSQGAEHFLKEIVWREFAYHLMYNSPH 290

Query: 301 VCMGK-----PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +            PW++KI     +  +QAW++G TG+  +DAAMR+L   G MHNR RM
Sbjct: 291 ILTESWREEWQEFPWSQKI-----TPQVQAWQRGLTGYGFVDAAMRELYVTGKMHNRARM 345

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL K L+  W+IG ++F   L+D D ASN  GWQW A +G D+ P+FR+FNP+ Q 
Sbjct: 346 IVASFLTKHLMTHWKIGMDWFADTLVDWDPASNALGWQWVAGSGPDAAPFFRVFNPSGQL 405

Query: 416 KRFDPQGTFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNY--PLPIVDHKKACH 468
           ++FDP+G +   W+ E  + P +     +  AP SW    DLS       P+V  +    
Sbjct: 406 EKFDPEGAYTSRWIAEGQDTPPRTALDFFDAAPLSW----DLSAGMAPAEPVVSLQAGRD 461

Query: 469 HTLNQYYAAKKQ 480
             L  Y+ A+ +
Sbjct: 462 RALTAYHEARGE 473


>gi|329764714|ref|ZP_08256309.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329138764|gb|EGG43005.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 451

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 151/466 (32%), Positives = 241/466 (51%), Gaps = 36/466 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L   R DLR+ DN  L  A   S+ +VI  FI   +       S  +  F+  SL  + +
Sbjct: 8   LFIFRRDLRLEDNTGLIYALKTSN-EVIPCFILDTDILDNLKKSRLRIKFLNESLKDLNE 66

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRLQH 129
            L ++    +  +      S E ++   L+ ++  +F N  Y +  +++ +K+ +   Q 
Sbjct: 67  QLIKRKTNLRIFRGR----SEEIIEKIILENKIDGVFLNGDYTKFAQLKENKIKKICNQK 122

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVPAIRLT 185
            +    F D +L  P  I     + Y VY+ F K      +++ ++ + R+  +  I+  
Sbjct: 123 NIGFNKFADYLLHVPDEIHTKEQKPYTVYSYFYKTAKTIPVRSKIKNNFRNYSLDKIKND 182

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +         +   +  + M   G +NAL IL+   + K   Y + RD P +  T++L
Sbjct: 183 NSL---------EITIENKEKM-EGGRRNALKILKNISEYK--NYQKTRDYPGLDKTTKL 230

Query: 246 SPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           S ++  G +S R+ +  +KE   +D          + +N+L WREF+ +++  +P+    
Sbjct: 231 SAHIRFGTISVREAYQAIKENLGID---------HTLINQLYWREFFTYVLHHFPN-SKS 280

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F     KI W+ +      W +G TGFPI+DA MRQLN  G+MHNR+RMI ASFL KD
Sbjct: 281 RTFKKKFRKIPWSTNKQEYHTWCKGETGFPIVDAGMRQLNKTGFMHNRVRMIVASFLTKD 340

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           + +DW++GE YF  +L+D D A N G WQWAASTG D+VPYFRIFNP IQ ++FD    +
Sbjct: 341 MHIDWKLGERYFAEKLVDYDPAVNAGNWQWAASTGCDAVPYFRIFNPWIQQEKFDSNCNY 400

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           I+ W+PEL  +  +YIH  + W  K    L YP PI++HK   + T
Sbjct: 401 IKKWIPELETLQPKYIH--NLW-KKYPEGLTYPKPILNHKIESNKT 443


>gi|90424846|ref|YP_533216.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
           BisB18]
 gi|90106860|gb|ABD88897.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
           palustris BisB18]
          Length = 483

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 148/481 (30%), Positives = 230/481 (47%), Gaps = 36/481 (7%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A     + LVW R+DLR++D+ AL  A   S A V+ +++   E      +      ++ 
Sbjct: 2   ANAPAPISLVWFRDDLRLSDHPALDDA-GRSGAAVVCLYVLDEESAGLRPLGGAARWWLA 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRRDK 121
            SL  +   L+ +G V    +      +   +     +    ++ +N           D 
Sbjct: 61  QSLRSLSADLAARGGVLILRRGP----AARIVAEVAREAGAVRVSWNDVPNRPARAVADD 116

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L  +     V  +     +L  P ++     +  +V+TPF K ++         +L  P 
Sbjct: 117 LAARLGDLGVAAQCCPGDLLAAPATVRTQQGRGLRVFTPFWKRVL---------ALGDPP 167

Query: 182 IRLTGPVTPSNIPRFF-----DYPFQAIDP--------MFPIGEQNALHILRKFCKEKVY 228
             LT P    ++P        D+  +   P         +  GE  A   L+ F    + 
Sbjct: 168 QPLTAPKALCSVPSLASDTLDDWKLEPTRPDWAGGLRARWQPGEAAAQRGLQHFLHGAIA 227

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y  +RD P    TS LSP+L  G +SPRQ W+  +    +      +    +L+EL WR
Sbjct: 228 GYATERDRPDRVATSTLSPHLRFGEISPRQVWHAARFAAAERPAI-AADVDKFLSELGWR 286

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF RHL+   P +   +   P  ++  W  D   L+AW++G TG+P++DA MR+L   G 
Sbjct: 287 EFCRHLLFDNPDLAT-RNLQPAFDRFPWTTDPIALRAWQRGRTGYPLVDAGMRELRLTGV 345

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFR+
Sbjct: 346 MHNRVRMVAASFLVKHLLLDWRCGEAWFWDTLVDADPASNPANWQWVAGCGADAAPYFRV 405

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVD 462
           FNP +QG+RFD +G ++R ++PE+  +  + IH P +     L+   ++L   YP PIVD
Sbjct: 406 FNPILQGERFDAEGDYVRRFIPEIAGLSNKSIHQPWTATPLELEAAGVTLGDTYPNPIVD 465

Query: 463 H 463
           H
Sbjct: 466 H 466


>gi|118617507|ref|YP_905839.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99]
 gi|118569617|gb|ABL04368.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99]
          Length = 447

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 159/477 (33%), Positives = 235/477 (49%), Gaps = 41/477 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+W R DLR+ D+ AL AA  + +  V+A F+  P      G+  R+  F+  SL 
Sbjct: 1   MTRALLWFRRDLRLGDHPALAAAADSEE--VLACFVVDPRLEASSGL--RRLQFLGDSLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF--YNRQYEINEVRRDKLLE 124
           Q+  +L  + +V +           + +++  +   VT  F  + R       RRD+ + 
Sbjct: 57  QLNDALQGRLLVTRGRPEQRIPLIAKAIEASSVH--VTGDFAPFGR-------RRDERVA 107

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             L  RV   +     L+ PG ++ +    Y+V+TPF +       +A   + P  A  L
Sbjct: 108 AGLG-RVPLVATGSPYLVSPGRVVKNDGSPYQVFTPFFRKWQDARWRAPADTGPGSACWL 166

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               T        D P   +D     GE  A+     F   K+  Y   RD P  +GTS+
Sbjct: 167 DPAQTDIEQCEIPD-PGTELD--LAAGEAAAIREWTAFRTAKLDRYEHDRDRPDFEGTSR 223

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +S YL  G + PR          V  +    +GA S+L EL +R+FY  ++  +P+    
Sbjct: 224 MSAYLKFGTIHPRT--------MVAGMDLTGTGARSYLRELAFRDFYGAVLHHWPASAWH 275

Query: 305 KPFIPWT---EKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                W    + I  + D++   + + WK G TG+P++DA MRQL   G+MHNR+RMI A
Sbjct: 276 N----WNSNFDGIVTDTDANARRVFECWKAGETGYPLVDAGMRQLRETGFMHNRVRMIAA 331

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDL + W+ G  +F+ QL DGDLASN  GWQW+A  G D+ PYFRIFNP+ Q ++F
Sbjct: 332 SFLVKDLHLPWQWGAAWFLDQLTDGDLASNQHGWQWSAGCGTDAAPYFRIFNPSAQAEKF 391

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           DP G +IR W+PEL +V    +H              YP PIVDH       L +Y+
Sbjct: 392 DPAGDYIRRWVPELRDV--DNVHRIQR--RGGPCPSTYPAPIVDHGTERAEALRRYH 444


>gi|298675064|ref|YP_003726814.1| deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
           Z-7303]
 gi|298288052|gb|ADI74018.1| Deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
           Z-7303]
          Length = 459

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 157/473 (33%), Positives = 238/473 (50%), Gaps = 30/473 (6%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLLQVQKSL 72
            R DLR+ DN  L  A  NS+  VI  FI  P    ++   +     F+  SL  ++  L
Sbjct: 11  FRRDLRVDDNTGLDYALENSEY-VIPCFIFDPRLIEKNDNFNPNSFQFLIESLEDLKHQL 69

Query: 73  SQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HR 130
           + KG  ++ +H  +        + +   +  +  +F NR Y     +RD+  +K  + + 
Sbjct: 70  NDKGAKLYLFHGIAE-----NVVTNLINKNLIDAVFVNRDYTPFSKKRDEAFKKACEMYN 124

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V   S +D +L  P  I       Y V+TPF K   +     +L  +       TG +  
Sbjct: 125 VDFISCNDLLLNNPDKIKTQKGTPYTVFTPFFKKASK--FDVNLPEMSSKQNFYTGKI-- 180

Query: 191 SNIPRFFDYPFQAI--DPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            N     D+  +A    P++   G  NAL IL     ++   Y  +RD P +  T+ LS 
Sbjct: 181 ENELNDTDHFLKAKRNKPLYVKGGRSNALKILENL--DEFKNYENERDYPFLDATTGLSA 238

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +   G +S R        EF   +I     +   + +L WR+FY +L   YP +   + F
Sbjct: 239 HNKFGTISIR--------EFYYTVIDKLGISHPLITQLYWRDFYTYLAHHYPYI-FKQSF 289

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + IEW+ DS   + W  G TGFPI+DA +R++N  G+MHNR+RMITASFLVKDL +
Sbjct: 290 KKKFDSIEWDNDSDKFKKWCAGETGFPIVDAGIREMNYTGYMHNRVRMITASFLVKDLHI 349

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DW+ GE+YF  +L+D D + N G WQW+ASTG D+ P+FRIFNP  Q K+FD +  +I+ 
Sbjct: 350 DWKWGEQYFARKLVDYDKSVNIGNWQWSASTGPDAQPFFRIFNPWSQQKKFDSECIYIKK 409

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           W+ EL NV  + I   H+  +KN     YP PI++HK     +L  +  A ++
Sbjct: 410 WIEELRNVSCKSI---HNLENKNTFIPGYPEPIINHKTEREKSLAVFRLANQK 459


>gi|332293614|ref|YP_004432223.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171700|gb|AEE20955.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 465

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 153/483 (31%), Positives = 227/483 (46%), Gaps = 54/483 (11%)

Query: 3   ATTAMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           ATT  S  V++ W R DLR+ DN     A    D  V+ +FI   E   +      +  F
Sbjct: 27  ATTMSSNKVNIFWFRRDLRLDDNVGFLEAL-KGDLPVLPIFIFDKEILDKLPKDDARVTF 85

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           I+ +L +++ +L  +      H  S    +D   +          +  +F NR YE    
Sbjct: 86  IFETLQKMRSTLQDE------HASSLAMYYDTPEKVFKQLSKDFEIATVFTNRDYEPYAK 139

Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+++   L+   I  K+F D V+     ++      Y VYTPF+    +        +
Sbjct: 140 ERDEVISSLLKDNDIEFKTFKDQVIFEKDEVVKGDGDPYVVYTPFKNKWKERFDTDKDLT 199

Query: 177 LPVPAIRLTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           +   +  L   +  S +P     D  F+      P  E +    L       +  Y + R
Sbjct: 200 IHYTSQHLNNLIEHSRLPNLSLSDMGFEKSSIEVP--EYDVTPTL-------IQNYEDTR 250

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           + PA  GTS L P+L  G +S R+   +   E  ++          W +ELIWREF+  +
Sbjct: 251 NFPAQDGTSHLGPHLRFGTVSVRKMMKKAIAETNEIF---------W-SELIWREFFMQI 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P     K F    ++IEW  +    + WK G TG+ ++DA MR+LNT G+MHNR+R
Sbjct: 301 LFHFPH-TKDKAFRSKYDRIEWRNNEDEFEKWKNGETGYLLVDAGMRELNTTGYMHNRVR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL K LL+DWR GE YF  +LLD +++SN G WQWAA +G D+ PYFRIFNP  Q
Sbjct: 360 MLVASFLCKHLLIDWRWGETYFAEKLLDYEMSSNVGNWQWAAGSGVDAAPYFRIFNPITQ 419

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
             +FD Q  +I  W+PE +                   + NYP  +VDHK+A    L  Y
Sbjct: 420 VDKFDKQKEYISKWIPEHD-------------------TDNYPEKMVDHKEARERCLKTY 460

Query: 475 YAA 477
             A
Sbjct: 461 KEA 463


>gi|312900797|ref|ZP_07760094.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0470]
 gi|311292278|gb|EFQ70834.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0470]
          Length = 267

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 122/264 (46%), Positives = 156/264 (59%), Gaps = 19/264 (7%)

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           +K+  Y  +RD P    TS LS +L  G LS R  W  L      L         ++  E
Sbjct: 3   QKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELASAPSSL------SKETFKKE 56

Query: 285 LIWREFYRHLMAFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           L WR+FY  + + +P      + + F      I+W  D  +   W++G TG+PIIDAAMR
Sbjct: 57  LAWRDFYNMIYSTFPQQKEEAIQEKF----RYIQWANDPEMFAKWQKGETGYPIIDAAMR 112

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           QLN  GWMHNRLRMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D
Sbjct: 113 QLNQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTD 172

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLN 455
           +VPYFRIFNP IQ K+FD  G FI+ ++PEL  VP +YIH P+   +         L  N
Sbjct: 173 AVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTRYHVHLGEN 232

Query: 456 YPLPIVDHKKACHHTLNQYYAAKK 479
           YP PIVD+  +   TL  Y  +K+
Sbjct: 233 YPKPIVDYASSKKQTLFLYEVSKE 256


>gi|163788107|ref|ZP_02182553.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
           bacterium ALC-1]
 gi|159876427|gb|EDP70485.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
           bacterium ALC-1]
          Length = 434

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 145/473 (30%), Positives = 221/473 (46%), Gaps = 47/473 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V++ W R DLR+ DN   Y A    +  V+ +FI   E   +      +  FI+ +L  
Sbjct: 4   TVNIFWFRRDLRLDDNVGFYEAL-KGNHPVLPIFIFDSEILSKLPKDDARITFIHETLQN 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++++L      ++     ++    E          +  ++ N  YE     RD  ++  L
Sbjct: 63  IRQTLQDN---YRSSIAMHYGKPKEVYTQLIKDYNINSVYTNHDYEPYAKERDTEVKSVL 119

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +H +  K++ D V+     I+      YKVYTP+ ++  +     D +     A     
Sbjct: 120 AEHNIEFKTYKDQVVFEKNEIVKKDGAPYKVYTPYMRSWKEKFKTLDFKIYKTKAY-FKN 178

Query: 187 PVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                N+P     D  F+  + + P  E ++  I           Y   R+ PA   TS+
Sbjct: 179 IFQEINLPNLSLSDIGFETSNQLIPPYEVSSKLIQN---------YEATRNFPAQNSTSR 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           L P+L  G +S R+   +   E  ++           L+ELIWREF+  ++  +P     
Sbjct: 230 LGPHLRFGTVSIRKMVKKAITETNEIF----------LHELIWREFFMQILWHFPHTAKD 279

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F P  ++IEW  +    +AW +G TG+P +DA MRQLN  G+MHNR+RM+  SFL K 
Sbjct: 280 -AFKPKYDRIEWRNNEGEFKAWCEGKTGYPFVDAGMRQLNETGFMHNRVRMLVGSFLCKH 338

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +L D D++SN G WQW A +G D+ PYFRIFNPT Q  +FD    +
Sbjct: 339 LLIDWRWGEAYFAEKLHDYDMSSNIGNWQWVAGSGVDAAPYFRIFNPTSQILKFDKNLEY 398

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ W+P+                      L YP PIVDHK+A    L  Y  A
Sbjct: 399 IKKWVPDFQ-------------------ELTYPQPIVDHKEARERCLKTYKYA 432


>gi|86134119|ref|ZP_01052701.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
           MED152]
 gi|85820982|gb|EAQ42129.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
           MED152]
          Length = 434

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 154/481 (32%), Positives = 226/481 (46%), Gaps = 63/481 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V + W R DLR+ DN   Y A   S+ KV+ +FI   E   +      +  FIY +L +
Sbjct: 4   TVTVFWFRRDLRLDDNIGFYNAL-KSEHKVLPIFIFDKEILSKLPKDDARVTFIYDTLQE 62

Query: 68  V----QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +    Q +      +F  +  S F + I+          +  +F NR YE    +RD+ +
Sbjct: 63  MRGELQDNYGSSIAMFHGNPESVFSELIK-------NYTIDAVFTNRDYEPYATKRDESI 115

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           E+ L ++ +  K+F D V+     ++      YKVYTP+ K   +   + DL+      +
Sbjct: 116 EQLLSENDIEFKTFKDQVIFEKDEVVKKDGDPYKVYTPYMKLWKEQFKKEDLKIYYTNDV 175

Query: 183 RLTGPVTPSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            L   +  S +P        F    Q I P           +     KE    Y + R+ 
Sbjct: 176 -LDNLIQNSRLPNLSLSDIGFTKSNQEITP---------YTVTPTLIKE----YEDTRNF 221

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA   TS L P+L  G +S R+   +   E         S    W  ELIWREF+  ++ 
Sbjct: 222 PAQDATSHLGPHLRFGTVSVRKMVKKAMAE---------SNEVFW-QELIWREFFMQILW 271

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     + F    ++IEW  +    +AW +G TG+P++DA MRQLN  G+MHNR+RM+
Sbjct: 272 HFPH-TKDEAFKSKYDRIEWRNNEREFKAWCKGETGYPLVDAGMRQLNETGFMHNRIRML 330

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SFL K LL+DWR GE YF  +L D ++ASN G WQW A +G D+ PYFRIFNPT Q K
Sbjct: 331 VGSFLCKHLLIDWRWGEAYFAEKLHDYEMASNVGNWQWVAGSGVDASPYFRIFNPTTQIK 390

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FD    +I+ W+ +                       +YP  I+DHK A    L  Y A
Sbjct: 391 KFDKDLKYIKKWVKDYEKS-------------------SYPKEIIDHKSARERCLTVYKA 431

Query: 477 A 477
           A
Sbjct: 432 A 432


>gi|294678477|ref|YP_003579092.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003]
 gi|294477297|gb|ADE86685.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003]
          Length = 483

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 155/483 (32%), Positives = 232/483 (48%), Gaps = 30/483 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+WLR D R++D+  L AA   S   V+A+FI  P     +G + +        L Q   
Sbjct: 8   LLWLRRDFRLSDHPMLSAAA-ASGRPVLALFILDPLA-EAYGAAPKWR------LEQALA 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           + +                ++  L     +     ++++R  +   + RD  ++  L+  
Sbjct: 60  AFAPALAACGVPLVLRRGPALAVLRQVLAESGAGAVWWSRDLDPAAIARDTEVKTALRAE 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SFD  +L  P ++       Y+VYTP+ +A+    V   L   PV A+R  GPV 
Sbjct: 120 GLEARSFDGQLLFAPWAVQTGQGGPYRVYTPYWRAVRGLTVAPPL--APVTALR-PGPVL 176

Query: 190 PS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                    + R        +     +GE  A   L +F +E +  Y  +RD  A   TS
Sbjct: 177 RGESLDALGLGRAMRRGGAVVAKYARVGEAAAQARLERFLREGIETYQARRDFLAENATS 236

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS +L+ G +SPR  W+         + + ++GA ++L EL+WREF  HLM +YP +  
Sbjct: 237 ELSEHLAWGEISPRVIWH----AGAQAMAEGRAGAETFLKELVWREFAWHLMFYYPRLAT 292

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + + P  +   W  +S   + W++G TG PI+DAAMR++   G MHNR RMI AS+L K
Sbjct: 293 -ENWRPDWDSFPWAGESAAAERWRRGQTGEPIVDAAMREMYVTGRMHNRARMIVASYLTK 351

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL DWRIG  +F   L+D D A+N  GWQW A  G D+ PYFRIFNP  Q ++FDP+G 
Sbjct: 352 HLLTDWRIGLAWFEDCLIDHDPAANAMGWQWVAGCGPDAAPYFRIFNPASQAEKFDPEGR 411

Query: 424 FIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + R WL E N    Q     +   P SW      +L+ PL  +D        L  Y A  
Sbjct: 412 YRRAWLAEGNRHAPQTAQDFFAAVPRSWGLVPGAALSAPL--IDLAAGRDRALAAYAARP 469

Query: 479 KQS 481
           K  
Sbjct: 470 KTG 472


>gi|227538334|ref|ZP_03968383.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241849|gb|EEI91864.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 437

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 162/482 (33%), Positives = 244/482 (50%), Gaps = 51/482 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIY 62
           +A+   + W R DLR+ DN AL+ A  +S+A V  VFI  +T          AR + FIY
Sbjct: 2   SAVPTSIFWFRRDLRLEDNHALFRAL-SSEAAVQPVFIFDSTILTRLDDPADARVT-FIY 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L  +Q+ L   G   + +     D +  W + Y  + +   ++ N  YE   + RD L
Sbjct: 60  QQLQLLQEQLKPYGSSIKTYYG---DPATVWEEIYE-EYKPAAVYVNSDYEPAAITRDLL 115

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           ++  LQ + V   +F D V+     I+ +    Y VYTP++   +  L +     LP+P+
Sbjct: 116 IQGILQQYEVDFLTFKDQVIFEKDEIVKNDGLPYTVYTPYKNKWLTTLEE----KLPLPS 171

Query: 182 IRLTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 +   N  R  DY   ++ D  F +   + +    K     +  Y + RDIP+++
Sbjct: 172 YNSENLL---NNLRQADYTLPSLQDLGFSL---STIPFPEKTFFTGIADYADTRDIPSLE 225

Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS L  +L  G +S R+   R             S   ++L+EL+WREF+   +  +P
Sbjct: 226 NGTSHLGVHLRFGTISIRKLVERAY----------PSQNKTYLHELVWREFFMMCLWHFP 275

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              + + +    + I W  +    +AW  G TG+P++DA MR+LNT G+MHNR+RM+TAS
Sbjct: 276 HT-VNQAYYSKYDHIRWENNLAHFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTAS 334

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DWR GE YF  +LLD D ++N G WQWAA  G D+ PYFRIFNPTIQ K+FD
Sbjct: 335 FLCKHLLIDWRWGEAYFAQKLLDYDQSANIGNWQWAAGCGMDAAPYFRIFNPTIQTKKFD 394

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P+  +I+ W+PE  +                    +YP PIV+H  A    L +Y A  +
Sbjct: 395 PKFVYIKKWVPEFQD-------------------FSYPSPIVEHAWARDRALARYKAGFE 435

Query: 480 QS 481
            S
Sbjct: 436 HS 437


>gi|86141641|ref|ZP_01060187.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella
           blandensis MED217]
 gi|85832200|gb|EAQ50655.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella
           blandensis MED217]
          Length = 434

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 155/478 (32%), Positives = 234/478 (48%), Gaps = 56/478 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V++ W R DLR+ DN     A    +  V+ +FI   E   +      +  FI+ +L +
Sbjct: 3   TVNIFWFRRDLRLDDNVGFLEAL-KGEHPVLPIFIFDKEILNELPEDDARVTFIFETLQK 61

Query: 68  VQKSLSQK--GIVFQYHQCSNFDDSI--EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           ++  L +K    +  YH  S   ++I  + L+ Y    +V  +F N  YE   + RDK +
Sbjct: 62  MRDELQEKHGSSIALYHGKS---ETIWKQLLEDY----KVDTVFTNHDYEPYALERDKKI 114

Query: 124 EKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPA 181
           +K L+ + +  ++F D V+     ++      Y VYTP++    Q +  AD    +   +
Sbjct: 115 KKLLEDQEVSFETFKDQVIFEKDEVVKGDGDPYVVYTPYKNKW-QEVFDADKHLKIHYTS 173

Query: 182 IRLTGPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             L   +  S +P     D  F+      P  E     I           Y + R+ PA 
Sbjct: 174 QYLENLIEHSRLPNISLSDMGFKKSSIEIPDYEVTPTLIQN---------YEDTRNFPAQ 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS L P+L  G +S R+         V   I  K+  F W +ELIWREF+  ++  YP
Sbjct: 225 DGTSHLGPHLRFGTVSVRKM--------VKKAIAEKNTVF-W-SELIWREFFMQILYHYP 274

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              +   F    ++IEW  +    + WK+G TG+ ++DA MRQLN  G+MHNR+RM+ AS
Sbjct: 275 E-TVNNAFRSKYDRIEWRNNKEEFEKWKKGETGYLLVDAGMRQLNKTGYMHNRVRMLVAS 333

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DWR GE YF  +LLD + +SN G WQWAA +G D+ PYFRIFNP  Q  +FD
Sbjct: 334 FLCKHLLIDWRWGEAYFAEKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFD 393

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
               +I+ ++PE +                   + +YP  +VDHK+A    L  Y AA
Sbjct: 394 KDKKYIKEFVPEFD-------------------TDDYPEKMVDHKEARERCLETYKAA 432


>gi|315658957|ref|ZP_07911824.1| deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
           M23590]
 gi|315496081|gb|EFU84409.1| deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
           M23590]
          Length = 460

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 134/343 (39%), Positives = 189/343 (55%), Gaps = 20/343 (5%)

Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA 203
           P   LN   Q YKV+T F KA    L Q   R  P    +L   +  ++     +   + 
Sbjct: 131 PSRTLNQQGQPYKVFTSFYKANRPQLRQR--RRYPYQLDKLKQQIINAD-----NTSVKK 183

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           +     IGE  +    + F    + +Y   R+      TSQLS  L+ G L   +   +L
Sbjct: 184 VTEHINIGEAKSQQQWQAFLNNNIEHYQYYREYLPETLTSQLSIALAYGFLDINEIMRQL 243

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            E + D     +    +++ EL++REFY  LM +YP       F    + I W+++    
Sbjct: 244 LERYHD----NEENYEAFIRELLFREFYYVLMVYYPETAHTS-FNDKYKHITWSENQSDF 298

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            AWK+G TG+PIIDAAM +L   G+MHNR+RM+TA FL K+L +DW  GE YF + L+D 
Sbjct: 299 NAWKEGRTGYPIIDAAMHELKQTGFMHNRMRMVTAQFLTKELFIDWTWGENYFKNLLIDY 358

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +G +I+ +LP+  NVP  Y+H P
Sbjct: 359 DAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDKKGLYIKTYLPQWANVPASYVHEP 418

Query: 444 --HSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
             H+   K+   DL  NYP PIVDH++A  H + Q+   KKQ+
Sbjct: 419 WKHAQTLKDYGIDLGTNYPWPIVDHQQARAHVMEQF---KKQA 458


>gi|312138453|ref|YP_004005789.1| deoxyribodipyrimidine photolyase [Rhodococcus equi 103S]
 gi|311887792|emb|CBH47104.1| putative deoxyribodipyrimidine photolyase [Rhodococcus equi 103S]
          Length = 443

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 153/485 (31%), Positives = 220/485 (45%), Gaps = 59/485 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVW R DLR+ D   L AA      + + +F+         G   R   F+Y SL 
Sbjct: 1   MTQSLVWFRRDLRVGDLPTLSAAGE----RALGLFVLDDRLLGPSGGPRRD--FLYRSLS 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L  + +V +        D +E +          ++  +  Y      RD  + +R
Sbjct: 55  ALDEQLDGRLLVVR-------GDPVEVVPLVAKAIGAQEVHVSADYGPYGRERDAAVAER 107

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------------DL 174
           +        +     + PG +       YKV+TP+ K  + +  +A            D 
Sbjct: 108 VDLVTTGSPY----AVAPGRVTKDDGSPYKVFTPWFKRWLDHGWRAPASTGADTLDWIDP 163

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
             + V   R   P   ++ P                GE  AL     FC + +  Y  +R
Sbjct: 164 DDVDVSKARNAIPAPDASGP--------------AAGEAAALERWSAFCDDDLIRYDAER 209

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P +  TS++S YL  G + PR           DL  K   GA  +  ++ WR+FY  +
Sbjct: 210 DRPDLDTTSRMSVYLKFGNIHPRTM-------LADLARKRSHGAEQYRRQVAWRDFYADI 262

Query: 295 MAFYPSVCM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +   P          F         + D+ +  AW +G TGFPI+DA MRQL + GWMHN
Sbjct: 263 LFQRPDSARRNYDAKFDAMRHDTGRDADA-MFAAWCEGRTGFPIVDAGMRQLVSEGWMHN 321

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMI ASFLVKDL + W  G  +FM  L+DGDLASN  GWQW A +G D+ PYFR+FNP
Sbjct: 322 RVRMIVASFLVKDLHLPWWRGARFFMQHLVDGDLASNQHGWQWTAGSGTDASPYFRVFNP 381

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
           T QG++FDP G ++R W+PEL  V  + +H       K+     YP PIVDH +     L
Sbjct: 382 TGQGEKFDPTGDYVRRWVPELRGVRGKAVHTL-----KDARPEAYPDPIVDHAEERREAL 436

Query: 472 NQYYA 476
            +Y A
Sbjct: 437 ARYGA 441


>gi|183981685|ref|YP_001849976.1| DNA photolyase, PhrI [Mycobacterium marinum M]
 gi|183175011|gb|ACC40121.1| DNA photolyase, PhrI [Mycobacterium marinum M]
          Length = 447

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 156/475 (32%), Positives = 232/475 (48%), Gaps = 37/475 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+W R DLR+ D+ AL AA  + +  V+A F+  P      G+  R+  F+  SL 
Sbjct: 1   MTRALLWFRRDLRLGDHPALAAAADSEE--VLACFVVDPRLEASSGL--RRLQFLGDSLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+  +L  + +V +           + +++  +        + R       RRD+ +   
Sbjct: 57  QLNDALQGRLLVTRGRPEQRIPLIAKAIEASSVHVSGDFAPFGR-------RRDERVAAG 109

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  RV   +     L+ PG ++ +    Y+V+TPF +       +A   + P  A  L  
Sbjct: 110 LG-RVPLVATGSPYLVSPGRVVKNDGSPYQVFTPFFRKWQDARWRAPAGTGPGSACWLDP 168

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             T        D P   +D     GE  A+     F   K+  Y   RD P  +GTS++S
Sbjct: 169 AQTDIEQCEIPD-PGTELD--LAAGEAAAIREWTAFRTAKLDRYEHDRDRPDFEGTSRMS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR          V  +    +GA S+L EL +R+FY  ++  +P+      
Sbjct: 226 AHLKFGTIHPRT--------MVAGMDLTGTGARSYLRELAFRDFYGAVLHHWPASA---- 273

Query: 307 FIPWT---EKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  W    + I  + D+    L + WK G TG+P++DA MRQL   G+MHNR+RMI ASF
Sbjct: 274 WHNWNSNFDGIVTDTDADARRLFECWKAGETGYPLVDAGMRQLRETGFMHNRVRMIAASF 333

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDL + W+ G  +F+ QL DGDLASN  GWQW+A  G D+ PYFRIFNP+ Q ++FDP
Sbjct: 334 LVKDLHLPWQWGAAWFLDQLTDGDLASNQHGWQWSAGCGTDAAPYFRIFNPSAQAEKFDP 393

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            G +IR W+PEL +V    +H              YP PIVDH       L +Y+
Sbjct: 394 AGDYIRRWVPELRDV--DNVHRIQR--RGGPCPSTYPAPIVDHGTERAEALRRYH 444


>gi|302530487|ref|ZP_07282829.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4]
 gi|302439382|gb|EFL11198.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4]
          Length = 445

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 152/472 (32%), Positives = 233/472 (49%), Gaps = 37/472 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ D+ AL+ A  +S   ++A+++         G S R + F+  SL ++ K
Sbjct: 1   MLWFRRDLRLRDHAALFEAAKHSK-HLLALYVLDDRLLEPAG-SPRIA-FLLNSLRELDK 57

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +LS + +V           +   + +  +        Y R+      R D + E   +HR
Sbjct: 58  ALSGRLMVRCGDPVREVVAAAREIRAAAVHVSADTAPYGRE------RDDAVAEALAEHR 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA---IRLTGP 187
           +          + PG +       Y+V+TPF +A  Q+         P PA   + +   
Sbjct: 112 IQWVPTGSPYAVTPGRVTKPDGTPYRVFTPFYRAWAQH-------GWPRPADTNVSIVDW 164

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V P++       P +    + P GE+ AL   ++F  + +  Y  +RD P   GT++LSP
Sbjct: 165 VKPAS-SEPLPEPPEVECELPPAGEEAALAGWQEFLADGLAEYATERDRPDHAGTTRLSP 223

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G + PR           DL      GA +  +EL WREF+  ++   P     + +
Sbjct: 224 YLRWGAIHPRTM-------LADLAGNRSEGAQALRSELCWREFHADVLWHRPETAR-RNY 275

Query: 308 IPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               + + ++       +   W++G TG+PI+DA MRQL   GWMHNR+RMI ASFLVKD
Sbjct: 276 DQRFDGMRYDTGKTAREMFALWREGRTGYPIVDAGMRQLLAEGWMHNRVRMIVASFLVKD 335

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W  G  +FM  L+DGDLASN   WQW A +G D+ PYFRIFNPT QG++FDP+G +
Sbjct: 336 LHLPWWWGARHFMKHLVDGDLASNQLNWQWVAGSGTDAAPYFRIFNPTTQGQKFDPKGDY 395

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +R ++PEL  V  + +H         +    YP PIVDH +     L +Y A
Sbjct: 396 VRRYVPELRGVAGKAVHV------LKERPEGYPQPIVDHAEERQVALQRYGA 441


>gi|148238598|ref|YP_001223985.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
 gi|147847137|emb|CAK22688.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
          Length = 492

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 162/487 (33%), Positives = 225/487 (46%), Gaps = 43/487 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE----QWRQHGISARQSHFIYA 63
           S  L W R DLR+ DN  L+AA     A V  V++  P           ++  +  F+  
Sbjct: 4   SRTLFWHRRDLRLADNTGLHAAAALGPA-VTGVYVLDPAIIAPPPELPPMAPARLWFLVE 62

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL+++Q+     G            D ++ L           + ++R  E     RD+ +
Sbjct: 63  SLVELQQRWRDAGSRLLVVA----GDPVQRLPQLASLLEAAAVVWSRDVEPYARERDRQV 118

Query: 124 EKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA- 181
            + LQ        D D +L+ P  +       Y+VY PF +     +  ++  ++  P  
Sbjct: 119 ARALQASGRKVLVDWDQLLVAPELLKTGGGDPYRVYGPFLRNWRGQVELSEPGTVEAPTG 178

Query: 182 -IRLTGP------VTPSNIPRFF------------DYPFQAID--PMFPIGEQNALHILR 220
            I L              + R               + F+ +D  P  P GE  A   L 
Sbjct: 179 LIDLDAACLDALQTAAGELGRLCAEGQRDLEQLRSGHGFKGMDLCPCRP-GEAAAAGQLA 237

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL--IKPKSGA 278
            F    +  Y   R+ P   GTS LS  LS+G +SPRQ W    +   DL    + +   
Sbjct: 238 VFADGPLLGYEPDRNFPGTAGTSGLSAALSVGTVSPRQAWC-AAQAAKDLARSDEQRQAI 296

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
             W  EL WREFY+  +  +P +  G P+     +  W  +      WK G TG PIIDA
Sbjct: 297 AVWEQELCWREFYQQALFHFPELADG-PYREQWRRFPWENNEDWFDFWKDGQTGMPIIDA 355

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           AMRQLN  GWMHNR RMI ASFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+
Sbjct: 356 AMRQLNETGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASS 415

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYP 457
           G D  P  RIFNP  Q  +FD  G +IR W+PEL +V T+  +      L++      YP
Sbjct: 416 GMDPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVCTKDLLSGDIGALERR----GYP 470

Query: 458 LPIVDHK 464
            P+V+HK
Sbjct: 471 EPLVNHK 477


>gi|158424448|ref|YP_001525740.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571]
 gi|158331337|dbj|BAF88822.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571]
          Length = 484

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 154/488 (31%), Positives = 238/488 (48%), Gaps = 24/488 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +A    ++W R+DLR+ DN AL AA   S  +V+A+++   +      +      ++  S
Sbjct: 2   SAAGTAVIWFRDDLRLADNPALAAAA-ASGRRVLALYVLDEDSPGVRALGGAALWWLAGS 60

Query: 65  LLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           L  ++  L Q G+  V +  +       +       L      + +N +    E   D+ 
Sbjct: 61  LRALKAELGQHGVPLVLRRGEAGRIVPDVARAAGADL------VAFNWRAGKAEQAVDEA 114

Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           + + L    V  +     +L  PGS+      + + ++ F +A ++       R+LPVP 
Sbjct: 115 VARHLSAAGVTVERTLGHLLHAPGSVRGTGGGLPRTFSSFMRAAVKGRDIG--RTLPVPR 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           +    P+   ++  +   P Q      +   +  GE  A   L  F  + +  Y E RD 
Sbjct: 173 LNGAAPLPCDDLEEWALEPTQPDWAGGLRTTWHPGEAAARARLEAFLADGLAGYGEGRDR 232

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P     S+LSPYL  G +SPRQ          D    P      +  EL WREF  HL+ 
Sbjct: 233 PDQTHVSRLSPYLRFGEISPRQV-LLAALAAGDAGTVPAKDVQKFEAELYWREFSHHLLF 291

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P +   +      +   W +    L+ W++G TG+PI+DA MRQL   GWMHNR+RMI
Sbjct: 292 AVPDLAR-RNLQASFDAFPWRECPGDLKKWQKGRTGYPIVDAGMRQLWQTGWMHNRVRMI 350

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K LL+ W+ GE +F   L+D DLA+N   WQW A +G D+ PYFRIFNP +QG+
Sbjct: 351 VASFLCKHLLLPWQDGELWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQGE 410

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW---LDKNDLSL--NYPLPIVDHKKACHHTL 471
           +FDP+GT++R ++PEL +VP + IH P S    L +  + L  +YP P+V+H  A    L
Sbjct: 411 KFDPEGTYVRTYVPELKDVPARLIHQPWSAPLELTRYGVRLGRDYPEPMVEHGAARDRAL 470

Query: 472 NQYYAAKK 479
             +   +K
Sbjct: 471 RAFEHTRK 478


>gi|189502200|ref|YP_001957917.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497641|gb|ACE06188.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 486

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 157/487 (32%), Positives = 248/487 (50%), Gaps = 35/487 (7%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           +LR  D   L     ++   +I +FI  P+   + G +++   ++Y S+   ++   Q  
Sbjct: 13  NLRFHDQPLLLEVLQHTQP-IIPIFINDPKVIERLGEASQ--WWLYQSIRAFKQ---QWK 66

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-KS 135
             +         DS+  L     +    K++  ++Y   E   D+ + + L    I  K 
Sbjct: 67  SAYNIELILRTGDSVRVLQQLLQETNANKIYLGKRYTKLEREIDERIYEELNRDGITIKF 126

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
           F+  +L  P +I N     ++++TPF K  +   ++ADL   P P     G   P N   
Sbjct: 127 FNTHLLFEPANIKNQQGNSFQIFTPFWKTCLTKTIEADL---PAPDHIFNGYNQPINSDD 183

Query: 196 FFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLS 246
             D+ +        + +   + + E  AL+ L  F K  +  Y   RD+ A    +SQLS
Sbjct: 184 LSDWKWGHSQAAWTRKLANHWHLSELAALNKLAIFLKNSLAGYNNNRDLIASPSFSSQLS 243

Query: 247 PYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPS---VC 302
           PYL  G +S ++ +N +      D  I+     F  L E+ WREF  +L+  +PS   V 
Sbjct: 244 PYLRWGQISAKKIFNEVIHTMERDPTIQQDGNTF--LKEIGWREFSYYLLYHHPSMQEVP 301

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           + K F    +   +  +  LL+ W++G TGFPIIDA MRQL   GWM NRLRMI ASFL+
Sbjct: 302 LNKRF----QDFPYENNLSLLEKWQKGTTGFPIIDAGMRQLWLEGWMPNRLRMIVASFLI 357

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL++W+ G+ +F+  L+D D A+N   WQW A  G D+ PYFRIFNP  QGK+FD +G
Sbjct: 358 KDLLINWQFGQAWFIDTLVDADPANNANSWQWVAGCGTDASPYFRIFNPITQGKKFDSEG 417

Query: 423 TFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSL--NYPLPIVDHKKACHHTLNQYYA 476
            +IR ++PEL ++PT+YIH P     +  ++ ++ +  +YP PIVDH    +  L+ +  
Sbjct: 418 KYIRKYVPELKDLPTKYIHQPWEMPITLQEEYNVIIGKDYPHPIVDHTIQKNKALDCWKE 477

Query: 477 AKKQSLL 483
            K +  L
Sbjct: 478 FKGKGYL 484


>gi|85702996|ref|ZP_01034100.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
 gi|85671924|gb|EAQ26781.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
          Length = 473

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 154/478 (32%), Positives = 223/478 (46%), Gaps = 27/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR+ D+ AL AA       +I VFI         G+ A     +  SL  + +
Sbjct: 8   LVWFRRDLRLADHPALCAAIEGG-GPIIPVFIHDDSV---AGLGAAPKWRLGLSLASLAR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L  +G      + S    ++E L +   +     + ++R Y+   + RDK ++  L + 
Sbjct: 64  DLEDRGSRLILRRGS----ALEVLRALVAETGAGAVHWSRLYDPQAIERDKAVKSALRED 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +S    V+  P ++       Y+VY+P  +A+    V   LR+          PV+
Sbjct: 120 GAAAQSHAGHVMFEPWTVETKTGGFYRVYSPMWRAVKDREVAVPLRAPSTILAPDMWPVS 179

Query: 190 PS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 ++        +   P   +GE  A+  L  F    +  Y + R+ PA++ TS L
Sbjct: 180 DGLDDWHMGAAMVRGAEVCLPYQRVGEAAAMDRLHAFTDGAISDYKDARNFPAVEATSSL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +SPRQCW+  +      L     GA  WL EL+WREF  HLM   P +    
Sbjct: 240 SENLTYGEVSPRQCWHAGQRA----LHAGAQGAEHWLKELVWREFAYHLMYHTPHILTDN 295

Query: 306 PFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               W +   W+ D+    + AWKQG TG P +DAAMR++   G MHNR RMI AS+L K
Sbjct: 296 WRTDW-DAFPWSTDADHPDVIAWKQGRTGEPFVDAAMREMYVTGKMHNRARMIVASYLTK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L+  W++G ++F   L D D ASN  GWQWAA  G D+ PYFR+FNP  Q ++FD  G 
Sbjct: 355 HLMTHWKVGLDWFADCLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQLEKFDRDGA 414

Query: 424 FIRHWLPELNNVPT----QYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           + R W+ E    P      Y  A P  W   +  S  YP  +VD     +  L  Y A
Sbjct: 415 YTRRWIAEGQGQPQATALDYFKAIPRRWSLSSTSS--YPNRLVDLAGGRNRALAAYEA 470


>gi|78486463|ref|YP_392388.1| deoxyribodipyrimidine photolyase [Thiomicrospira crunogena XCL-2]
 gi|78364749|gb|ABB42714.1| Deoxyribodipyrimidine photo-lyase type I [Thiomicrospira crunogena
           XCL-2]
          Length = 479

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 163/498 (32%), Positives = 243/498 (48%), Gaps = 58/498 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWL+ +LRI  + AL AA   SD  ++A F   PEQ     I A  + ++  SL Q+Q+
Sbjct: 4   LVWLQRELRINHHPALEAAMAASDDIIVAYF-HDPEQ----TIGAANTVWLANSLQQLQQ 58

Query: 71  SLSQK--------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ--YEINEVRRD 120
               +        GI  Q             L+      ++ ++FY  Q  +    +++ 
Sbjct: 59  DFKTRHGRLWCLEGIFEQQ------------LEQVIQTHQIEQVFYTFQLGHPFKAMQQQ 106

Query: 121 KL-LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            L + +R Q  V  ++F+    L    +LN + Q YKV+TPF   L + L + +  S P+
Sbjct: 107 ALNVCQRCQ--VPLRAFETENWLHYNQLLNQSGQPYKVFTPFYNTLSRKLSELEPFSDPI 164

Query: 180 PAIRLTGPVT---------PSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYY 229
             +  T             P ++ +    P+ + I   + +GE  A      F  E +  
Sbjct: 165 DTLEKTARTVCQSGQDQNLPQSLNQILARPWARKIMQHWQVGEHKAWSKFETFITEGLAN 224

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP---KSGAFSWLNELI 286
           Y + RD PAI GTSQLSP+L  G L  R     +  E + L  +P         WL +L 
Sbjct: 225 YEQDRDFPAIDGTSQLSPHLHFGELHSR----AIVFELLSLETEPTIANQAIRVWLRQLA 280

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAM 340
           WREF R ++  +P      PF    E        + ++ S   QAW +G TG PIIDA M
Sbjct: 281 WREFARAILWHFPHT-ETHPFQAKFETFYRPLAEDDSESSKNYQAWCEGRTGVPIIDAGM 339

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           +QL   GWMHNR+RM+ AS+L K+  +DWR G ++F   L+D D A+N  GWQW A  G 
Sbjct: 340 KQLWETGWMHNRVRMLVASWLTKNADIDWRAGAQWFNDTLVDADPANNTLGWQWVAGCGV 399

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D+ PY+R+FNP  Q ++FD  G ++R WLPEL     ++IHAP  WL   +    +  PI
Sbjct: 400 DAAPYYRLFNPVRQSEKFDANGQYLRQWLPELKTYSNKHIHAP--WLIAPNEK--HFCPI 455

Query: 461 VDHKKACHHTLNQYYAAK 478
           +D  ++  H L++    K
Sbjct: 456 IDLTESRQHHLDKVATLK 473


>gi|254522734|ref|ZP_05134789.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14]
 gi|219720325|gb|EED38850.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14]
          Length = 476

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 158/476 (33%), Positives = 236/476 (49%), Gaps = 32/476 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MKA   +SV LVW R DLR+ DN AL AA   +  +V+ V+I  P +  +    A    +
Sbjct: 1   MKAMH-VSVALVWFRRDLRLQDNPALQAAL-EAGHEVVPVYIHAPHEEGEWVPGAASDAW 58

Query: 61  IYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            + SL  +   L  +G  +V ++       DS+  L +   Q     +++NR+YE     
Sbjct: 59  RHRSLAALDADLRSRGSSLVLRH------GDSLATLQALVEQIGAEAVYWNRKYEPATQP 112

Query: 119 RDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD  +++ L +H +  +S + S+L  P  I     Q YKV+TP+ + ++ +     L + 
Sbjct: 113 RDAEIKRTLREHGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWCLPALTAA 172

Query: 178 P--VPAIRLTG-PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           P  + A +  G  +    +    D+         P GE  AL  L  F    +  Y EQR
Sbjct: 173 PKALTAHKADGLALDELRLAPTLDWDSGFWQHWRP-GEAGALEALSVFEDGALRGYREQR 231

Query: 235 DIPAIQGTSQLSPYLSIGVLSP---RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           D+P   GTS++SP+L  G ++P         L+    D  I        +L +L WR+F 
Sbjct: 232 DLPDRVGTSRMSPHLHFGEIAPWRIAHALEGLRSAGTDADID------GYLRQLGWRDFA 285

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            HL+  +P         P  ++  W   S   L  W++G TG PI+DA +R+L   G+MH
Sbjct: 286 YHLLHHFPKTPTDN-LNPRFDRFPWATPSVAQLHDWQRGNTGVPIVDAGLRELWHTGYMH 344

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RMI AS+L K L   W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FN
Sbjct: 345 NRVRMIVASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFN 404

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP----LPIVD 462
           P  Q ++FDPQ  +I  W+PEL  +P +   AP  W     L+ + P     P+VD
Sbjct: 405 PVTQAEKFDPQARYISRWVPELAALPVKARFAP--WQHPQLLAAHAPGYPRTPLVD 458


>gi|260433957|ref|ZP_05787928.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417785|gb|EEX11044.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 474

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 157/494 (31%), Positives = 238/494 (48%), Gaps = 52/494 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--------ATPEQWRQHGISARQSHFIY 62
           L+W R DLR++D+ AL AA   S   VI VFI            +WR           + 
Sbjct: 9   LIWFRQDLRLSDHPALSAAV-RSGRPVIPVFIRDSLVDDLGAAPKWR-----------LS 56

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L  + ++L  KG           D     L +   +    +++++R Y+ + + RD  
Sbjct: 57  LGLAALAQNLEHKGSKLVLRSGPALDA----LKALIDETGAREVYWSRAYDPDAIARDTH 112

Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           ++  L    +  KSF   +L  P ++     + ++V+TP  +A+ Q  V +     P P 
Sbjct: 113 IKSVLTELGLTAKSFPGHLLFEPWTVATKTGKPFRVFTPMWRAVAQRDVPS---PDPAPE 169

Query: 182 IRLTGPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                P+ P++       +          +      GE  A   L  F  E++  Y  QR
Sbjct: 170 RLAAPPLWPASEHLDDWGLGHAMRRGAGIVGQHVQAGETAAEARLDAFM-ERLDAYPAQR 228

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D  A  GTS LS YL++G + PR  W+R+K   +   I    GA ++L +L+WREF  HL
Sbjct: 229 DALADDGTSHLSEYLALGEIGPRTVWHRVKGAALIGSI----GADAFLRQLVWREFAYHL 284

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           M   P + + + + P  +   WN+D  +  ++AW    TG P++DA +R++   G MHNR
Sbjct: 285 MYHTPHL-LTQNWRPEWDGFPWNEDIETPEVRAWMTARTGIPVVDAGLREMYVTGRMHNR 343

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI AS+L K L+  W+IG ++F   L+D D ASN  GWQW A +G D+ P+FRIFNP 
Sbjct: 344 ARMIVASYLTKHLMTHWKIGMDWFADCLVDWDAASNAMGWQWVAGSGPDASPFFRIFNPQ 403

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQ----YIHA-PHSW-LDKNDLSLNYPLPIVDHKKA 466
            Q ++FDP G ++R W+ E  + P +    Y  A P SW L  +D    YP P+VD K  
Sbjct: 404 TQAEKFDPTGAYVRRWVAEGQSDPPKTALSYFEAIPRSWNLSPDD---AYPQPVVDLKVG 460

Query: 467 CHHTLNQYYAAKKQ 480
               L  Y   K Q
Sbjct: 461 RERALAAYEGRKNQ 474


>gi|116075564|ref|ZP_01472823.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
 gi|116066879|gb|EAU72634.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
          Length = 492

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 172/490 (35%), Positives = 230/490 (46%), Gaps = 49/490 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVF-----IATPEQWRQHGISARQSHFIY 62
           S  L W R DLR+ DNK L AA     A V  V+     I TP         AR   F+ 
Sbjct: 4   SRTLFWHRRDLRLADNKGLQAAAALGSA-VTGVYVLDPAIITPPHHLPPMAPARL-WFLV 61

Query: 63  ASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
            +L ++Q+     G   IV          D +  L           L ++R  E     R
Sbjct: 62  ETLRELQQRWRDAGSRLIVVA-------GDPVAVLPRLAALLEAPTLVWSRDVEPYARER 114

Query: 120 DKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNL-------VQ 171
           D+ + K LQ        D D +L+ P  +       Y+VY PF +     +       V+
Sbjct: 115 DRQVAKALQADGRKVLVDWDQLLVAPELLKTGGGDPYRVYGPFLRNWRGQVERTEPSTVE 174

Query: 172 A-----DLRSLPVPAI--------RLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNAL 216
           A     DL S  + AI        RL             ++ F+ ++  P  P GE  A 
Sbjct: 175 APTGLCDLESEQLEAISSGAGDLGRLCAEGQRELERLQVEHGFRGMELCPCRP-GEAAAA 233

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPK 275
             L  F    +  Y   R+ P + GTS LS  LS+G LSPRQ W   +E + +    + +
Sbjct: 234 EQLATFVDGPLLAYEPDRNFPGVVGTSYLSAALSVGTLSPRQAWCAAQEMKGLARSDEQR 293

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
                W  EL WREFY+  +  +P +  G P+     +  W  +      WK G TG PI
Sbjct: 294 QAITVWEQELGWREFYQQALFHFPELANG-PYRDQWRRFPWENNEDWFDFWKDGQTGMPI 352

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           IDAAMRQLN  GWMHNR RMI AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+
Sbjct: 353 IDAAMRQLNETGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWS 412

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSL 454
           AS+G D  P  RIFNP  Q  +FD  G +IR W+PEL +V T+  +    + L++     
Sbjct: 413 ASSGMDPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVNTKDLLSGEIAALERR---- 467

Query: 455 NYPLPIVDHK 464
            YP  +V+HK
Sbjct: 468 GYPELLVNHK 477


>gi|325676163|ref|ZP_08155844.1| deoxyribodipyrimidine photolyase [Rhodococcus equi ATCC 33707]
 gi|325553073|gb|EGD22754.1| deoxyribodipyrimidine photolyase [Rhodococcus equi ATCC 33707]
          Length = 457

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 152/486 (31%), Positives = 220/486 (45%), Gaps = 59/486 (12%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A++  LVW R DLR+ D   L AA      + + +F+         G   R   F+Y SL
Sbjct: 14  AVTQSLVWFRRDLRVGDLPTLSAAGE----RALGLFVLDDRLLGPSGGPRRD--FLYRSL 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + L  + +V +        D +E +          ++  +  Y      RD  + +
Sbjct: 68  SALDEQLDGRLLVVR-------GDPVEMVPLVAKAIGAQEVHVSADYGPYGRERDAAVAE 120

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------------D 173
            +        +     + PG +       YKV+TP+ K  + +  +A            D
Sbjct: 121 HVDLVTTGSPY----AVAPGRVTKDDGSPYKVFTPWFKRWLDHGWRAPASTGADTLDWID 176

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
              + V   R   P   ++ P                GE  AL     FC + +  Y  +
Sbjct: 177 PDDVDVSKARTAIPAPEASGP--------------AAGEGAALERWSAFCDDDLIRYDAE 222

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P +  TS++S YL  G + PR           DL  K   GA  +  ++ WR+FY  
Sbjct: 223 RDRPDLDTTSRMSVYLKFGNIHPRTM-------LADLARKRSHGAEQYRRQVAWRDFYAD 275

Query: 294 LMAFYPSVCM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           ++   P          F         + D+ +  AW +G TGFPI+DA MRQL + GWMH
Sbjct: 276 ILFQRPDSARRNYDAKFDAMRHDTGRDADA-MFAAWCEGRTGFPIVDAGMRQLLSEGWMH 334

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RMI ASFLVKDL + W  G  +FM  L+DGDLASN  GWQW A +G D+ PYFR+FN
Sbjct: 335 NRVRMIVASFLVKDLHLPWWRGARFFMQHLVDGDLASNQHGWQWTAGSGTDASPYFRVFN 394

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           PT QG++FDP G ++R W+PEL  V  + +H       K+     YP PIVDH +     
Sbjct: 395 PTGQGEKFDPTGDYVRRWVPELRGVRGKAVHTL-----KDARPQAYPDPIVDHAEERREA 449

Query: 471 LNQYYA 476
           L +Y A
Sbjct: 450 LARYGA 455


>gi|261855425|ref|YP_003262708.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
           c2]
 gi|261835894|gb|ACX95661.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
           c2]
          Length = 490

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 168/497 (33%), Positives = 238/497 (47%), Gaps = 39/497 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNS--DAKVIAVFI----------ATPEQWRQHGISARQ- 57
           +VW R DLR+ D+ AL AA         +I V+I          A   +    G +AR  
Sbjct: 4   IVWFRQDLRLGDHPALDAAIQTGADQGHIIPVYIHPGYAPSDQTADATKPLYEGAAARWW 63

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            H    SL +   S   + I+ Q    +     I        + +  ++ +NR+ E    
Sbjct: 64  RHHSLRSLAERLASCGSRLIIRQGEPLAELQRLIH-------ETKANRVVWNRRMEPAAR 116

Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
             D  ++  L+   I   SF+ + L  P +I N   + +KV+TP+ KA++      DL +
Sbjct: 117 AEDTRIKAALRAEGINVDSFNGNYLHEPWTIQNKQGKPFKVFTPYWKAVVA--AGLDLPT 174

Query: 177 LPVPAIRLTGPVTPSN--IPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYY 230
            P P    T P   ++  I      P  A D  F      GE  A      F    +  Y
Sbjct: 175 YPEPDNLPTVPRALNSLAIDELELLPAIAWDKDFYNHWQPGEPGAWSRFEDFLP-LIDEY 233

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            E R+     G S+LS +L  G +SPRQ    L +    +L +P+ G   ++ EL WREF
Sbjct: 234 AEARNHLIGTGVSKLSAHLHFGEISPRQIVRYLLDTRGSVL-EPR-GIEHFVRELGWREF 291

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             +L   YP   +  P        +W      L+AW++G TG P++DAAMR L   GWMH
Sbjct: 292 GAYLAYHYPQ-TVDAPLDARFLNFKWRDAPDDLRAWQRGQTGIPVVDAAMRCLWQTGWMH 350

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RMI ASFL K+LL+DWR G  +FM  L+D D  SN  GWQW A TG D+ PYFRIFN
Sbjct: 351 NRARMIVASFLTKNLLIDWRCGAAWFMDTLVDADEPSNTAGWQWTAGTGADAAPYFRIFN 410

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--YPLPIVDHK 464
           P +Q ++FDP GTFIR W+PEL  +  +Y+ AP     + L +  + L   YP PI D K
Sbjct: 411 PVLQAEKFDPDGTFIRRWVPELARLENKYLFAPWTASETALAQAGIVLGKTYPEPISDLK 470

Query: 465 KACHHTLNQYYAAKKQS 481
            +    L  +   K+ +
Sbjct: 471 VSRQRALVHFDQIKQNT 487


>gi|95929775|ref|ZP_01312516.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
           684]
 gi|95134071|gb|EAT15729.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
           684]
          Length = 475

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 157/489 (32%), Positives = 241/489 (49%), Gaps = 41/489 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN AL  A       VI ++I   E      + A    +++ SL  + +
Sbjct: 10  IMWFRQDLRLHDNPALLTATRL--GPVIPIYILDDEHAADQRMGAASRCWLHRSLDALNQ 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L     +F+       D  +E L  +   + VT   +NR YE   + RD++++++LQ  
Sbjct: 68  QLDGHLQLFR----GPADTLLEQLVQHYDCRTVT---WNRCYEPWRINRDRIIKEKLQGL 120

Query: 131 VICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLTGPV 188
            I    D+  LL  P  +L      Y+++TPF +    ++    +RS LP PA      V
Sbjct: 121 GITVHSDNGSLLWEPWQVLKRDQTPYQIFTPFYRHARDSV---PVRSPLPRPAEIALAAV 177

Query: 189 TPSNIPRFFDYPFQAIDP-------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           TP +  +  D   +   P        +  GE  A    + F +E++  Y E RD+PA   
Sbjct: 178 TPYSALKLADLELRPNHPWADKVLHHWQPGEAGAQQRWQTFMEEELLGYGEGRDLPAQPH 237

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS- 300
            S+LSP +  G +S  Q W+       D        A ++  +L WREF    +  +P  
Sbjct: 238 VSRLSPAIHWGEISVHQLWH-------DAQAIGHEDALAFQRQLAWREFSVTQLFHHPDM 290

Query: 301 --VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             + + + F        W+ D+  L  W+QG TG P +DA MR+L   G MHNR+RM+  
Sbjct: 291 DRINLDRRF----NLFPWHDDAEKLNRWQQGLTGIPFVDAGMRELWQTGTMHNRVRMVVG 346

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK+L + W  G  +F   LLD DLA+N+  WQW A  G D+ PYFRIFNP  QG++F
Sbjct: 347 SFLVKNLGIHWHHGAAWFWDCLLDADLANNSASWQWIAGCGADAAPYFRIFNPVTQGQKF 406

Query: 419 DPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLN 472
           DP G + RH++PEL  +P +Y+     AP   L +  ++L   YP P+VD K +    L+
Sbjct: 407 DPHGDYTRHFVPELAKLPNRYLFCPWQAPKGLLQECGITLGGTYPEPMVDIKVSRQQALD 466

Query: 473 QYYAAKKQS 481
            Y   ++ +
Sbjct: 467 AYAHMRQAT 475


>gi|330752085|emb|CBL80595.1| deoxyribodipyrimidine photolyase [uncultured Leeuwenhoekiella sp.]
          Length = 434

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 222/474 (46%), Gaps = 48/474 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SV + W R DLR+ DN     A   SD  V+ +FI   E   +      +  FIY +L +
Sbjct: 3   SVSIFWFRRDLRLDDNVGFLEAL-KSDYPVLPIFIFDKEILDKLPKDDARVTFIYETLQK 61

Query: 68  VQKSLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           ++  L         H  S    +   I+          V +++ NR YE    RRD+ + 
Sbjct: 62  MRDRLQND------HTSSLALFYGKPIDIWKQILKDYEVKEVYTNRDYEPYAKRRDEEIS 115

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
              + + I  K+F D V+     ++    + Y VYTP++   ++   + +   +   +  
Sbjct: 116 SLFEEKDIDFKTFKDQVIFEKDDVVKGDGEPYIVYTPYKNKWLETFNEDNDLKIHYTSQH 175

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           L   V  S +P               + + +    L       +  Y + R+ PA  GTS
Sbjct: 176 LNNLVENSRLPNLTLSEMGFKTSSLKVPDYDVTPTL-------IDNYEDTRNFPAQDGTS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +L P+L  G +S R+   +   E         +    W +EL+WREF+  ++  YP   +
Sbjct: 229 RLGPHLRFGTVSVRKMVKKALAE---------NNQVFW-SELVWREFFMQILYHYPE-TI 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    ++I+W  +    + WK G TGF ++DA MR+LNT G+MHNR+RM+TASFL K
Sbjct: 278 NNAFRKKYDRIDWRNNEEEFEKWKTGTTGFLLVDAGMRELNTTGYMHNRVRMLTASFLCK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF  +LLD + ASN G WQWAA +G D+ PYFRIFNP  Q  +FD +  
Sbjct: 338 HLLIDWRWGETYFAEKLLDYEQASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKERK 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I  ++PE +                   +  YP  +VDHK+A    L  Y  A
Sbjct: 398 YIEKFIPEYD-------------------TSEYPEKMVDHKEARERCLKTYKQA 432


>gi|149184696|ref|ZP_01863014.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21]
 gi|148832016|gb|EDL50449.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21]
          Length = 464

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 153/488 (31%), Positives = 246/488 (50%), Gaps = 44/488 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VWLR DLR+ D  AL+AA       VI V++   E+   H        +++ SL  
Sbjct: 3   SPQIVWLRRDLRVADQPALHAAAQA--GPVIPVYVLDDERAGDHAYGGASKVWLHYSLES 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126
           + KS   +       +     D+ + L     +     +   R YE   +   D+L +  
Sbjct: 61  LCKSFGNRRSQIVLRKG----DAPQVLAGIADEVGAGCIHAIRHYEPWWKEAEDELRDAL 116

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + R +C  +D + LLPPGS+   +   YK+YTPF K++++ +   D+   P        
Sbjct: 117 EEDRKLCL-YDGNYLLPPGSVTTGSGDPYKIYTPFSKSMLEVMPPRDVLGEPETI----- 170

Query: 187 PVTPSNIPR---FFDYPFQAIDPMFPIG-------EQNALHILRKFCKEKVYYYVEQRDI 236
             +P N P      D+      P +  G        ++A H   ++  ++V  Y E R++
Sbjct: 171 -SSPDNWPESDALEDWELLPSKPDWAGGIRDFWDFGEDAAHERLEWWADEVADYDEGRNL 229

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+   TS+LSP+L  G +SP Q W+ LK++  D       G  ++  E+IWR++ ++++ 
Sbjct: 230 PSNDITSRLSPHLHWGEISPAQVWHALKDKRSD-------GWKTFAKEIIWRDYAQNVID 282

Query: 297 FYPSVCMGKPFIPWTEKIEWN--KDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            +P+    + +  + E+  W      HL    L+ W++G TG+PI+DA MRQL   GW+H
Sbjct: 283 QFPNYPR-ESYRDYDERTLWRNPNAGHLIEEDLECWQRGMTGYPIVDAGMRQLWQTGWIH 341

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RMI ASFLVK LL+DWR GE+++   L+D D  +N   WQW + TG DS  + RI  
Sbjct: 342 NRVRMICASFLVKHLLIDWRHGEQWYWDCLVDADYGNNGVNWQWISGTGVDSNMFSRIMA 401

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  Q ++FD    +IR ++PEL  +    IH P      +D   +YP+ ++ HK+A    
Sbjct: 402 PLSQSEKFD-AAAYIREYVPELAELDDDCIHDP-----SDDRRGDYPVKVIGHKEARERA 455

Query: 471 LNQYYAAK 478
           L  Y A+K
Sbjct: 456 LEAYRASK 463


>gi|254511542|ref|ZP_05123609.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
 gi|221535253|gb|EEE38241.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
          Length = 479

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 162/499 (32%), Positives = 232/499 (46%), Gaps = 44/499 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M    A S  ++W R DLR++D+ AL AA       ++ VFI          + A     
Sbjct: 1   MDMAPAHSAIILWFRRDLRLSDHPALSAAMRTG-RPIVPVFILDDAV---QALGAAPKWR 56

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L    K LSQ G      Q +  D     L+S         +F++R YE   + RD
Sbjct: 57  LGLGLEAFAKGLSQIGSRLILRQGAALDV----LESLIRDTGAGTVFWSRGYEPVSIARD 112

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  +SF   +L  P +I   + Q ++++TP  +A     VQ   R +P 
Sbjct: 113 TRIKSALTGQGIEVRSFAGHLLFEPWTIATKSGQPFRMFTPMWRA-----VQG--RDVPT 165

Query: 180 PA---IRLTGPVTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVY 228
           P     RL  P       +  D+          +   P    GE  A   L  F   ++ 
Sbjct: 166 PEPGPARLMAPEGWPGSDQLADWQLGRDMRRGARIARPFIRPGEVAARDQLDGFL-HRID 224

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y EQRD     GTS LS YLS+G + PR  W+R++    +       GA ++L +L+WR
Sbjct: 225 QYAEQRDRVDKTGTSDLSEYLSLGEIGPRMIWHRVQ----NAARTGAPGADAYLRQLVWR 280

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTI 346
           EF  HLM  +P +     + P  +   W  D     ++AW+Q  TG P++DA +RQ+   
Sbjct: 281 EFAYHLMYHWPHLLTDN-WKPEWDTFPWGTDPDTPEIRAWRQARTGIPLVDAGLRQMYVT 339

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G MHNR RMI AS+L K L+  W++G ++F   L D D A+N  GWQW A +G D+ PYF
Sbjct: 340 GRMHNRARMIVASYLTKHLMTHWKLGADWFADCLTDWDPAANAMGWQWVAGSGPDAAPYF 399

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSW-LDKNDLSLNYPLPI 460
           RIFNP  Q  RFDP   +IR W+ E    P     A     P SW L  +D    YP P+
Sbjct: 400 RIFNPQTQRVRFDPDEGYIRRWIAEGQARPEATALAYFDAIPRSWGLSPDD---PYPEPV 456

Query: 461 VDHKKACHHTLNQYYAAKK 479
           V  K+     L  + + KK
Sbjct: 457 VGLKQGRTRALRAFESRKK 475


>gi|124514880|gb|EAY56391.1| Deoxyribodipyrimidine photolyase [Leptospirillum rubarum]
          Length = 536

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/475 (32%), Positives = 236/475 (49%), Gaps = 35/475 (7%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIY 62
           + A    +VW RN+LR++DN  L  A       ++ VFI  P +    G S   + H+  
Sbjct: 58  SEAFISSIVWFRNNLRLSDNPPLREAAER--GPLLPVFIGEPSR----GASPEGARHWWR 111

Query: 63  A-SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           A SL  +  SLS+ G    + +     D    L     + ++ K+      + +  R   
Sbjct: 112 ARSLRCLDHSLSRLGAPLLFLRG----DPAILLPDLATRLKIDKILAMEAIDPDGRRTQS 167

Query: 122 LLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L+  L  + V    F    L+PP  +       +KV+TPF +    +L           
Sbjct: 168 RLQSALSGKPVEFHLFPADYLVPPAGLPAERRSPWKVFTPFWQRAQSHLPPPLPLPA--- 224

Query: 181 AIRLTG-PVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQ 233
             RL G P   S  P  + +  +  D        +  GE+ A   L  F ++++  Y  +
Sbjct: 225 PDRLDGIPFPRSETPEDWGWEPEKPDWAAEMRSFWDPGEEGARRRLNAFLEKRLKNYAVK 284

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD      +S LSP+L+ G +S R  W  ++E        P+     +L+EL WREF  H
Sbjct: 285 RDFLDEDTSSLLSPHLANGEISIRSVWWSIRES-----TAPEEDRAKFLSELGWREFSAH 339

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           LM  +P +   +P      +I W +D   L AW++G TG P++DA MRQL  +G++ NR+
Sbjct: 340 LMWHHPDLAT-QPLQKGRPEIAWREDPSSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRV 398

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+  SFLVK+LL+DWR G E+F   L+D D A+N   WQW +  G D+ P+FRIFNP +
Sbjct: 399 RMVAGSFLVKNLLIDWRKGREWFSDNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVL 458

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLNYPL--PIVD 462
           QG++FDP+G +++ +LPEL  +P +Y+H    AP S LD   +  + P   PIVD
Sbjct: 459 QGEKFDPEGRYVKTYLPELARIPPRYLHCPWTAPSSLLDNAGIGKDSPYRNPIVD 513


>gi|319785752|ref|YP_004145227.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464264|gb|ADV25996.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 476

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 162/453 (35%), Positives = 222/453 (49%), Gaps = 35/453 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M V LVW R+DLR+ D+ AL AA       V  V+I  P++       A    +   SL 
Sbjct: 1   MGVALVWFRDDLRLDDHPALRAALDRGLVPV-PVYIHAPDEEGAWAPGAASDAWRRRSLA 59

Query: 67  QVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            + ++L+Q+G  +   H  S     +  L +         + +NR+YE +   RD  +++
Sbjct: 60  ALAEALAQRGSRLLMLHGPS-----LGTLQALAALTGAEAVLWNRRYEPHIEARDTRIKR 114

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +L Q  +  +SF+ S+L  P  I       Y+V+TPF K     L Q  LR L   + RL
Sbjct: 115 QLRQAGLHAESFNGSLLFEPWEIETKQGDPYRVFTPFWK---NALAQWRLRPLWEASARL 171

Query: 185 TGP-------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
             P             + P   P   D+     D   P GE  A   L+ F    +  Y 
Sbjct: 172 PSPDQAGAPDGRHLDAIVPETRP---DWDAGFWDEATP-GEAGARARLQAFLAHGLEGYA 227

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           + RD  A+ GTS+LS +L  G +S ++            +  P    F  L EL WREF 
Sbjct: 228 QARDRMAVDGTSRLSAHLHFGEVSVQRV---AAAVLAAEVPAPDRERF--LAELGWREFA 282

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            H+M  YP V + +   P      W +     L AW++G TG PIIDA MRQL   GWMH
Sbjct: 283 HHVMHHYPHV-VDQDLDPRMADFRWARPLRTTLDAWERGRTGVPIIDAGMRQLWQTGWMH 341

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RMI AS++ K L + WR G  +F   L+D DLA+N  GWQWAA TG D+ PYFR+FN
Sbjct: 342 NRVRMIVASWVTKHLRLHWRHGARWFWDTLVDADLANNTQGWQWAAGTGADAAPYFRVFN 401

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           P  Q  +FDPQG +I  WLPEL  +P     AP
Sbjct: 402 PVSQAMKFDPQGEYIARWLPELAALPLPARFAP 434


>gi|302864753|ref|YP_003833390.1| deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
           27029]
 gi|302567612|gb|ADL43814.1| Deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
           27029]
          Length = 440

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/455 (31%), Positives = 230/455 (50%), Gaps = 37/455 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V    DLR+ D+ AL AAC   D +V+ +++  P   +   +S  ++ F++ SL  +++
Sbjct: 7   VVLFTRDLRVHDHPALAAACSAFD-RVVPLYVLDPALQK---LSPNRTRFLHQSLADLRE 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--RRDKLLEKRL- 127
           +L ++G      +     ++++      L ++V         +++    RR++ L     
Sbjct: 63  ALRKRGGDLVIRRGDPVAETVK------LARKVGAEGVGLSADVSRYAHRRERRLRAECD 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +HR+  + F    ++ PG++       Y+V++P+ +A  Q +   D  + P   +RL   
Sbjct: 117 RHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAW-QGVRWRDELAAPK-RVRLPDG 174

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V P  +P     P +   P   +G +             +  Y +  D  A   TS+LSP
Sbjct: 175 VDPGRLPD----PPKGDSPDAAVGGETVARRRLTAWLPTLDRYDDIHDDMAGDETSRLSP 230

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G +SP    NR  +         + G F  + +L WR+FY  ++A +P +      
Sbjct: 231 YLRFGCVSPLAVANRAGD---------RDGPF--VRQLCWRDFYHQVVAGFPDLST---- 275

Query: 308 IPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           + +    + +W  D H   AW +G TG PI+DA MRQL   GWMHNR R+ITA +L K L
Sbjct: 276 VAYRRGAREDWRDDPHAFDAWAEGRTGMPIVDAGMRQLRAEGWMHNRARLITAGYLTKHL 335

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR G E F   LLDGD  +N+G WQW A TGND+ PY R FNP  Q +R+DP G ++
Sbjct: 336 GLDWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPY-RGFNPVRQAERYDPDGAYV 394

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           R W+PEL +V  + +H P    D+   +L+YP P+
Sbjct: 395 RRWVPELASVAGKAVHQPWRLPDEVRHTLDYPPPL 429


>gi|302541523|ref|ZP_07293865.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459141|gb|EFL22234.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC
           53653]
          Length = 445

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/481 (30%), Positives = 227/481 (47%), Gaps = 56/481 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   +  S  +    +DLR+ DN  L+AA   +D +V+ +F+              +  F
Sbjct: 1   MTPPSKPSTSIAVFTSDLRLRDNPVLHAALRAAD-RVVPLFVVDRRVAAAGFAVPNRVAF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L  +   L ++G            D++E +     Q    ++           RR+
Sbjct: 60  LRDCLADLDAGLRERGGRLIVRTG----DAVEEIRRVAEQVDAGEVHIAGGVSAFAGRRE 115

Query: 121 KLLEKRLQ-----HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------ 169
             L + L      H  +  + +      PG++       + V+TP+ +A  Q +      
Sbjct: 116 ARLREALGGALRVHGAVLTAAE------PGTVTPSGKDHFAVFTPYFRAW-QGVELRRPF 168

Query: 170 -------VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRK 221
                  V   +RS P+ A+ L G  +PS              P  P  GE+     L  
Sbjct: 169 AAPRGVRVPPGVRSEPLSALSLLGSGSPS--------------PGLPEGGERAGRRRLDA 214

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           + +  +  Y +++D  A   TS+LSPYL  G LSP +  +R ++           GA ++
Sbjct: 215 WLRSGLGAYADRQDDLAGDATSRLSPYLHFGCLSPVELVHRARKSG-------GPGADAF 267

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + +L WR+F+  ++A  P       + P  ++  W  D   + AWK G TG+PI+DA MR
Sbjct: 268 VRQLAWRDFHHQVLAARPDASHTD-YRPRGDR--WRSDDAAVAAWKAGRTGYPIVDAGMR 324

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           QL   GWMHNR R++ ASFL K L VDWR+G  +F+  L+DGD+A+N   WQW A TG D
Sbjct: 325 QLAAEGWMHNRARLLVASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTD 384

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           + P  R+ NP  Q +RFDP GT++R W+PEL ++P + +H P +  D    +L YP PIV
Sbjct: 385 TRPN-RVLNPLAQARRFDPDGTYVRRWIPELADLPGRQVHTPWTLPDPERTALPYPPPIV 443

Query: 462 D 462
           D
Sbjct: 444 D 444


>gi|256374682|ref|YP_003098342.1| deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827]
 gi|255918985|gb|ACU34496.1| Deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827]
          Length = 421

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 151/476 (31%), Positives = 236/476 (49%), Gaps = 62/476 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ D+ AL  A   +  + +A+F+  P+  R  G    ++ F++  L  
Sbjct: 3   SSTVVWFRRDLRVEDHPALLEAADRA-DRALALFVLDPKLLRPSGKP--RTDFLHRCLKS 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L  + +V +        D +E + +   +     +  +        RRD+ + + +
Sbjct: 60  LDDRLGGRLMVVE-------GDPVEVVPAVAREIGAETVHVSADTGPYGRRRDEAVGEEV 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLT 185
           +       +     + PG +       Y+V+TPF +A   +  +  AD  +  V  I+  
Sbjct: 113 ELVEAGSPY----AVKPGRVRKADGTPYRVFTPFYRAWADHGWRRPADTDASTVDWIKPP 168

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                S  PR    P             +   +  +F  E++  Y   RDIP + GTS+ 
Sbjct: 169 R----STRPRAKALP-------------DVAELWERFRDERLPDYHRTRDIPGVDGTSRF 211

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--- 302
           S +L  GV+ PR   + L ++          G+  + +EL WREFY  ++  +P+     
Sbjct: 212 SAFLRWGVVHPRTLLDDLGQD---------EGSKVFRSELAWREFYADVLWHHPASARHN 262

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           + + F    ++IE ++D     AW+QG TG+PI+DA MRQL   GWMHNR+RMITASFLV
Sbjct: 263 LDRRF----DRIELDEDRDHFDAWRQGRTGYPIVDAGMRQLLEEGWMHNRVRMITASFLV 318

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL + W  G  +FM  L+DGDLASN   WQWAA +G D+ PYFR+FNP  QG++FDP+G
Sbjct: 319 KDLHLPWWWGARHFMEHLVDGDLASNQHNWQWAAGSGTDAAPYFRVFNPITQGQKFDPKG 378

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +IR ++PEL +V  + +H P               PIVDH       L+++ A K
Sbjct: 379 DYIRRYVPELRDVAGKAVHQPRD-------------PIVDHAHERQVALDRFAAIK 421


>gi|302548942|ref|ZP_07301284.1| deoxyribodipyrimidine photolyase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302466560|gb|EFL29653.1| deoxyribodipyrimidine photolyase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 458

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 147/465 (31%), Positives = 228/465 (49%), Gaps = 34/465 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M V +V   +DLR+ D+  L AA  +S   V+ +F+           +  +  F+   L 
Sbjct: 1   MHVSVVLFTSDLRLRDHPPLRAAL-DSAGTVVPLFVRDRAVTEAGFAAPNRGAFLADCLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++G       CS   D +E +     +    ++     +     RR+  L + 
Sbjct: 60  DLDSSLRERGGRLVV--CSG--DLVEEVCRVVTEADADEVHMAAAHSRFATRREDALRRA 115

Query: 127 LQ--HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK----ALIQNLVQADLRSLPVP 180
           L+   R +      +V +PPG +       + V+TP+ +    A ++++V A  R +PVP
Sbjct: 116 LEADGRRLFVHDAVTVAVPPGEVTPSGSDHFAVFTPYHRQWAQARLRDVVAAP-RRVPVP 174

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  V    +P   D P   I P  P G E      +  + +  +  Y + RD  A 
Sbjct: 175 EH-----VKGEPLPARDDVP--GISPALPAGGESEGRKRVTAYWRRGLGAYDDTRDDLAA 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LS +L  G LSP +  +R +            GA + + +L WR+F+R ++A  P
Sbjct: 228 DSTSRLSAHLHFGTLSPVELIHRARRHG-------GPGAEALVRQLAWRDFHRQVLAARP 280

Query: 300 SVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                      T++  W  +      ++AW+QG TG+P+IDAAMRQL   GWMHNR R++
Sbjct: 281 DAAHTDYR---TQRDRWRTERTAGDDIEAWRQGRTGYPVIDAAMRQLRHEGWMHNRARLL 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFL K L VDWRIG  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP  Q K
Sbjct: 338 TASFLTKTLYVDWRIGAAHFLHWLVDGDVANNQLNWQWMAGTGTDTRPN-RVLNPVTQAK 396

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           R+DP GT++R W+PEL  +    +H P      +  +L+YP P+V
Sbjct: 397 RYDPDGTYVRRWVPELAGLDAPAVHEPWKLPGLDRAALDYPDPVV 441


>gi|196476809|gb|ACG76268.1| deoxyribodipyrimidine photolyase [Amblyomma americanum]
          Length = 147

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 101/145 (69%), Positives = 119/145 (82%)

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           I+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+NNGGWQW
Sbjct: 1   IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 60

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
           AASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P  W  K  ++L
Sbjct: 61  AASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTL 120

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479
           +YP PIV+HK+A   TL  Y AA+K
Sbjct: 121 DYPQPIVEHKEARVQTLAAYEAARK 145


>gi|240169571|ref|ZP_04748230.1| Phr protein [Mycobacterium kansasii ATCC 12478]
          Length = 444

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 159/490 (32%), Positives = 231/490 (47%), Gaps = 64/490 (13%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+W R DLR+ D+ AL AA  +   +V+A F+  P      G   R+  ++  SL 
Sbjct: 1   MARALLWFRRDLRLRDHPALAAAAADD--EVLACFVLDPRLEASSG--RRRLQYLGDSLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q++  L  + +V +           E +     +   + +  +  +     RRD+ +   
Sbjct: 57  QLRSDLGGRLLVTRGR-------PEERIARIAKEIEASTVHISEDFAPFGRRRDERVRAA 109

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V   +   S LL PG +       Y+V+TPF +   +         L  P+   TG
Sbjct: 110 LGS-VPLVATGSSYLLSPGRVAKDDGTPYRVFTPFFRRWSE---------LGWPSPARTG 159

Query: 187 P-----VTPSNIP-RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 + P+ +P    + P   +      GE  AL     F  + +  Y + RD P + 
Sbjct: 160 RDCARWLDPAQVPVEHCEIPDPGVPLDLAAGEAAALREWGAFVDDGLERYAQDRDRPDLD 219

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS++S +L  G + PR          V  L    +GA S+L EL +R+FY  ++  +P+
Sbjct: 220 GTSRMSAHLRFGTIHPRT--------MVAALDFSGAGARSYLRELAFRDFYAAVLYDHPA 271

Query: 301 VCMGKPFIPWTEKIEWNKD------------SHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
                    W     WN D             HL +AWK G TGFP+IDA MRQL   G+
Sbjct: 272 SA-------WR---NWNSDYDRIRTDTGSRAEHLFEAWKAGETGFPLIDAGMRQLRQTGF 321

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RMI ASFLVKDL + W+ G  +F+ QL DGD+ASN  GWQW A  G D+ PYFR+
Sbjct: 322 MHNRVRMIAASFLVKDLHLPWQWGAAWFLDQLTDGDVASNQHGWQWCAGCGTDAAPYFRV 381

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           FNPT QG++FDP G +IR W+PEL+     ++               YP PIVDH     
Sbjct: 382 FNPTTQGQKFDPSGDYIRRWVPELSAATDAHLRT-------GKRPSGYPPPIVDHGTERA 434

Query: 469 HTLNQYYAAK 478
             L +Y   +
Sbjct: 435 EALRRYRGMR 444


>gi|86132772|ref|ZP_01051364.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis
           MED134]
 gi|85816726|gb|EAQ37912.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis
           MED134]
          Length = 436

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 154/479 (32%), Positives = 220/479 (45%), Gaps = 52/479 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +   V + W R DLR+ DN     A    D  V+ +FI   E   +      +  FIY  
Sbjct: 2   STKKVTIFWFRRDLRLDDNVGFLEAL-KGDYPVLPIFIFDKEILDKLPEDDARVTFIYNE 60

Query: 65  LLQVQKSLSQK---GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           L +++ +L  +    +   Y          E +  Y +Q  +T    NR YE   + RDK
Sbjct: 61  LQKMRDTLQAEHDSSLAMFYSTPEQI--FKELIADYDVQAVIT----NRDYEPYALERDK 114

Query: 122 LLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +   L+   I   +F D V+     I+      Y VYTPF+        +     +   
Sbjct: 115 KIASLLEENDISFTTFKDQVIFEKDEIVKGDGDPYVVYTPFKNKWKATFDEDKDLIIHYT 174

Query: 181 AIRLTGPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           +  L   +  S +P     D  F+      P  +     I           Y + R+ PA
Sbjct: 175 SQYLDNLIDHSRLPNVTLVDMGFKKSSIEVPDYDVTPTLIEN---------YEDTRNFPA 225

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             GTS+L P+L  G +S R+         V   I   +  F W +ELIWREF+  ++  +
Sbjct: 226 QDGTSRLGPHLRFGTVSVRKM--------VKKAIAQTNEVF-W-SELIWREFFMQILYHF 275

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     K F    ++I+W  +    + WK G TG+ ++DA MR+LN  G+MHNR+RM+TA
Sbjct: 276 PH-TKDKAFRSKYDRIDWRNNEEEFEKWKNGQTGYALVDAGMRELNATGYMHNRVRMLTA 334

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF  +LLD D++SN G WQWAA +G D+ PYFRIFNP  Q  +F
Sbjct: 335 SFLCKHLLIDWRWGETYFAEKLLDYDMSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKF 394

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           D Q  +I  W+PEL                     L+YP  +VDHK+A    L  Y  A
Sbjct: 395 DKQKEYINKWVPELQ-------------------ELSYPDKMVDHKEARERCLKTYKEA 434


>gi|209884870|ref|YP_002288727.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
 gi|209873066|gb|ACI92862.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
          Length = 487

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 175/518 (33%), Positives = 244/518 (47%), Gaps = 88/518 (16%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFI 61
            +A SV +VW RNDLR++D+ AL AA     A +I +FI      Q  +  + A    ++
Sbjct: 6   ASASSV-IVWFRNDLRLSDHAALAAAAGTG-APLICLFILDEAAAQSARRPLGAAAKWWL 63

Query: 62  YASLLQVQKSLSQKG------------IVFQYHQCSNFDDSIEWLDS------YCLQQRV 103
             SL  + + L ++G            I+ Q  Q +    ++ WLDS       C +Q +
Sbjct: 64  ANSLRTLDRELRKRGQRLILRRGDTATILVQIAQEAKAK-AVFWLDSEIPAEAACARQVI 122

Query: 104 TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
           T L +    E +  R D                   +L  P  I N      +V+TPF K
Sbjct: 123 TAL-HEIGVETHISRSD-------------------LLASPSMIRNKEGHGLRVFTPFWK 162

Query: 164 ALIQNLVQADLRSL-----PVPAIRLTGPVTPS-NIPRFFDYPFQAIDP--------MFP 209
                     +R+L     P+PA++   P   S       D+  + + P         + 
Sbjct: 163 ---------RVRALGDPPPPLPAMKKLPPSVASVESESIEDWQLEPLHPDWAGGLRARWK 213

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE  A   L  F  + +  Y   RD  A   TS LS +L  G +SPRQ ++  +     
Sbjct: 214 PGEAGARKKLDAFLDDAIDGYASGRDDLARDQTSHLSAHLRFGEISPRQVFHATR----- 268

Query: 270 LLIKPKSGAFS-----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
                 + A S     +L+EL WREF RHL+   P +   +   P  +   W  D   L 
Sbjct: 269 -FAAAHNPALSHDVEKFLSELGWREFCRHLLFDQPDLHR-QDLQPSFDNFPWRTDRAALS 326

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           AW+QG TG+PI+DA MR+L   G MHNR+RM+ ASFLVK LL+DWR GE +F   L+D D
Sbjct: 327 AWQQGRTGYPIVDAGMRELWHTGTMHNRVRMVAASFLVKHLLIDWREGERWFWDTLVDAD 386

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
             SN G WQW A  G D+ PYFRIFNP +QG++FDP G ++  W+PEL  +P + IH P 
Sbjct: 387 PGSNPGNWQWVAGCGADAAPYFRIFNPVLQGEKFDPDGAYVMKWVPELAKLPPKLIHQP- 445

Query: 445 SW------LDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            W      L    ++L   YP PIVDHK A    L  Y
Sbjct: 446 -WEATPMELAAAGITLGKTYPAPIVDHKAARERALAAY 482


>gi|88802270|ref|ZP_01117797.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
           23-P]
 gi|88781128|gb|EAR12306.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
           23-P]
          Length = 434

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 151/476 (31%), Positives = 224/476 (47%), Gaps = 53/476 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V++ W R DLR+ DN   Y A   S+  V+ +FI   +   +      + +FIY +L  
Sbjct: 4   AVNIFWFRRDLRLDDNVGFYNAL-KSEHPVLPIFIFDEDILDKLQKEDARLNFIYDTLQD 62

Query: 68  VQKSLSQK---GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           ++  L +K    I   +   S         +    +  +  +F NR YE     RD  ++
Sbjct: 63  MRAILEKKHGSSIAMLHGNPSAI------FEKLISEYSIHTVFTNRDYEPYATERDNKIQ 116

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             L    I   +F D V+     ++      YKVYTPF K   +     +L      +  
Sbjct: 117 ALLSSNGIHFDTFKDQVIFEKNEVVKKDGLPYKVYTPFMKVWKEQFKTYNLDFYYTSSF- 175

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK--FCKEKVYYYVEQRDIPAIQG 241
           L   +  + +P            +  IG + A   ++K     + +  Y E R+ PA+  
Sbjct: 176 LENLIQNTELPNLH---------LSDIGFEVAKQKIKKHTVTPKLIQTYEETRNFPALDS 226

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+L P+L  G +S R+         ++  I  K+  F W  ELIWREF+  ++  +P  
Sbjct: 227 TSRLGPHLRFGTVSVRKM--------MEKAISEKNEIF-W-QELIWREFFMQILWHFPYT 276

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                F P  ++IEW  +      W QG TG+P++DA MRQLN  G+MHNR+RM+  SFL
Sbjct: 277 SKN-SFKPKYDRIEWRNNEAEFNKWCQGETGYPLVDAGMRQLNETGFMHNRIRMLVGSFL 335

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+DWR GE YF  +L D ++ASN G WQW A +G D+ PYFRIFNPT Q K+FD  
Sbjct: 336 CKHLLIDWRWGEAYFAKKLHDYEMASNVGNWQWVAGSGVDAAPYFRIFNPTTQIKKFDKD 395

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             +I+ W+P                   N   L Y   +VDHK+A    L+ Y  A
Sbjct: 396 LAYIKKWVP-------------------NFQELTYAKEMVDHKEARERCLSTYKEA 432


>gi|319954856|ref|YP_004166123.1| deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
 gi|319423516|gb|ADV50625.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
          Length = 436

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 155/478 (32%), Positives = 222/478 (46%), Gaps = 57/478 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + + W R DLR+ DN  LY A    D  V+ +FI   E          +  FI+  L  +
Sbjct: 5   ISIFWFRRDLRLEDNVGLYQAL-KGDYPVLPIFIFDKEILENLPKDDARVSFIFEQLESM 63

Query: 69  QKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           + +L ++    +  YH         E   S      V  ++ N  YE     RD  ++  
Sbjct: 64  RNTLQEEVESSLAIYHGTPQ-----EIFKSLIKDYEVQAVYTNHDYEPYATERDTKIQDY 118

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRSLPVPAI 182
           L+ + V   S+ D V+   G +L      Y VYTP++   K +     + DL +      
Sbjct: 119 LKDKQVDFHSYKDQVIFEKGDVLKDDGDPYVVYTPYKNKWKTIFD--AKKDLETYNTKKY 176

Query: 183 RLTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                +  S +P     D  F+      P     +  I           Y + R+ PAI+
Sbjct: 177 -FKNFIAHSRLPNLSLSDMGFETSKIKVPNYSAGSKVIQN---------YEDTRNYPAIE 226

Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS+L P+L  G +S R+   R         I  K+  F W +ELIWREF+  ++  +P
Sbjct: 227 NGTSRLGPHLRFGSVSIREITKRA--------IAEKNEVF-W-SELIWREFFMQILWHFP 276

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                  F P  ++IEW  +    + WK G TG+ ++DA MR+LNT G+MHNR+RM+ AS
Sbjct: 277 HTTKN-AFRPKYDRIEWRNNEAEFEKWKNGETGYALVDAGMRELNTTGYMHNRVRMLVAS 335

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DWR GE YF  +LLD DL++N G WQWAA +G D+ PYFRIFNP  Q  +FD
Sbjct: 336 FLCKHLLIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFD 395

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            Q  +I  W+ +L                     L+YP  +VDHK A    L  Y  A
Sbjct: 396 KQKEYINTWVSDLQ-------------------ELSYPDKMVDHKMARERCLKTYKEA 434


>gi|306835185|ref|ZP_07468221.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           accolens ATCC 49726]
 gi|304568940|gb|EFM44469.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           accolens ATCC 49726]
          Length = 445

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 149/447 (33%), Positives = 221/447 (49%), Gaps = 44/447 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAAC------HNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
             L+W R+DLR++DN+AL  A       + S  +++AV +  P       +      +  
Sbjct: 2   TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPAYPSTRPLGGATHWWRE 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE--INEV--R 118
            SL  + + L+ +G+           D+   + S   +     + +NR+Y   + EV  R
Sbjct: 62  RSLHALAQELASRGVKL----LRATGDARTVIPSIAHEVGADTVTWNRRYHGPLREVDAR 117

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
               L     + + C  F    L+ P  + N     YKV+TPF  A    L  AD   LP
Sbjct: 118 VKATLADAGINAISCPGF---TLVEPWEVTNAQGNPYKVFTPFAAAARSQL--ADEEPLP 172

Query: 179 VP---AIRLTGPVTPSNIPR-FFDYP--FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
           VP   A R  G    S+ P    D P    ++   +  GE  A   L +     + +Y E
Sbjct: 173 VPELLAGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLGQL---DLAHYAE 229

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RDIPA   TS LSP+L  G +SPR+ W    EE       P +  F   +EL+WR+F  
Sbjct: 230 ERDIPARNATSLLSPHLRFGEVSPREVWVAAAEE-------PDAEKFQ--SELLWRDFAW 280

Query: 293 HLMAFYPSVC---MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           H +   P +    + + F     + +W+ +   L+ W++G TG P++DA MR+L   G+M
Sbjct: 281 HRLYHLPDLATRNVRQKF----NRFDWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYM 336

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM+  SFL K+L + WR+GEE+F   L+D D ASN   WQW A  G+D+ P+FRIF
Sbjct: 337 HNRVRMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIF 396

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVP 436
           NP  Q +RFDP G +IR W P L+  P
Sbjct: 397 NPETQAQRFDPDGAYIRQWAPTLSAPP 423


>gi|254450032|ref|ZP_05063469.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238]
 gi|198264438|gb|EDY88708.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238]
          Length = 469

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 160/486 (32%), Positives = 230/486 (47%), Gaps = 48/486 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV-Q 69
           + W+R D RI DN AL AAC  S   VIA+FI   E    HG + +   F     ++V  
Sbjct: 5   IYWVRRDFRIGDNAALSAAC-ASGRPVIALFICD-EVVEGHGAAPK---FRLGEGVRVFG 59

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L++ G      +     D++  L    +Q  V  +++NR Y+     RD  ++  L+ 
Sbjct: 60  AALAEAGSRLILRR----GDALAVLRELVVQTGVQAIYWNRLYDPASKARDTGVKAALKD 115

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAI--- 182
             I   SF   +L  P ++       Y+V+TP  K +    V   +    S+PVP +   
Sbjct: 116 DGIEVASFAGHLLFEPWTVETKTGGFYRVFTPLWKTVRGREVATPIAAPASVPVPDVWPA 175

Query: 183 -------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                  +L G +               +     +GE+ A   L  F  E+V  Y   RD
Sbjct: 176 SDQLDDWKLGGAMRRGR---------DVLAAHICVGEEAARSRLDTFIDERVQSYQTNRD 226

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +P++ GTS+LS  L+ G +SP  CW+         +   K  A  +  EL+WREF  HL+
Sbjct: 227 MPSVDGTSRLSENLTYGEISPAVCWHAGWAA----IHSGKGQAEVFCKELVWREFAYHLV 282

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              P +        W +   WN D +  + AWKQG TG P +DAAMR++   G MHNR R
Sbjct: 283 HHTPHIVDRNWKEGW-DAFPWNTDDTAEVMAWKQGRTGVPFVDAAMREMYVSGTMHNRGR 341

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI AS+L K L+  W++G+ +F   L D D ASN  GWQWAA +G D+ PYFR+FNP  Q
Sbjct: 342 MIVASYLTKHLMTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQ 401

Query: 415 GKRFDPQGTFIRHWLPELN----NVPTQYIHA-PHSW-LDKNDLSLNYPLPIVDHKKACH 468
             +FD  G + R W+ E      +    Y  A P SW L  +D+   YP P+VD      
Sbjct: 402 LDKFDHAGLYARTWIAEGQGEAPDTALSYFDAIPKSWGLAPSDV---YPAPVVDMATGRQ 458

Query: 469 HTLNQY 474
             L  Y
Sbjct: 459 RALEAY 464


>gi|291443506|ref|ZP_06582896.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
           15998]
 gi|291346453|gb|EFE73357.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
           15998]
          Length = 456

 Score =  222 bits (566), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 145/467 (31%), Positives = 226/467 (48%), Gaps = 32/467 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SV +V   +DLR+ D+  L AA  ++D +V+ +F+      R    +  +  F+   L  
Sbjct: 3   SVAVVLFTSDLRLHDHPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLAD 61

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIE--WLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           +   L  +G   IV +          +E    DS  +   V+     R+  I E      
Sbjct: 62  LDTGLRDRGGRLIVRRGGTAREVKRVVEQTGADSVHIAAGVSGYAAQREERIREALAGTG 121

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVP- 180
            E R+   V+         L PG ++       + V+TP+ +      V+    +L  P 
Sbjct: 122 CELRVHDAVVTA-------LAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRG---TLAAPR 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +R+   V+   +P       + + P     GE+    ++  +    +  Y +  D  A 
Sbjct: 172 TVRVPDGVSGDALPDR--DAVKGVSPGLARGGEEAGRKLVTSWLHGPMAAYEDGHDDLAG 229

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LSP+L  G +S  +  NR +E       K   G  +++ +L WR+F+  ++A  P
Sbjct: 230 DATSRLSPHLHFGTVSAAELANRARE-------KGGPGGEAFVRQLAWRDFHHQVLAARP 282

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                  + P  ++  W  D   ++AWK G TG+P++DAAMRQL   GWMHNR RM+TAS
Sbjct: 283 DASW-SDYRPRHDR--WRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTAS 339

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGKRFD
Sbjct: 340 FLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPN-RVLNPVIQGKRFD 398

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           P G ++R W+PEL  V    +H P      +   ++YP P+VD  +A
Sbjct: 399 PDGAYVRRWVPELAEVEGPAVHEPWKLEGLDRAGVDYPDPVVDLAEA 445


>gi|89891446|ref|ZP_01202951.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
 gi|89516220|gb|EAS18882.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
          Length = 440

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 154/481 (32%), Positives = 228/481 (47%), Gaps = 53/481 (11%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  V++ W R D+R+ DN     A   SD  V+ +FI   E          +  FIY  L
Sbjct: 2   SKKVNIFWFRRDMRLDDNVGFLEALK-SDYPVLPIFIFDKEILDHLPEDDARVTFIYEEL 60

Query: 66  LQVQKSLSQK---GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-K 121
            +++ +L +     +   Y +  N    I  +D+Y     V  +F NR YE     RD K
Sbjct: 61  QRMRNNLQENHDSSLATFYGKPLNIWQEI--IDNY----EVNAVFTNRDYEPYAQERDLK 114

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSL 177
           L     +  V   +F D V+     I+      Y VYTP++   ++N  +    AD  ++
Sbjct: 115 LTSFFNEQNVAFHTFKDQVIYEKDDIVKDDGDPYVVYTPYKNKWLENFRKDYGKADNLTI 174

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                 L   +  S +P               I E N    L       +  Y + R+ P
Sbjct: 175 HYTNDYLDNCIKNSRLPNLNLSDIGFKKSSIEIPEYNITPTL-------IEDYEKTRNYP 227

Query: 238 AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           A++ GTS+L  YL  GV+S R+   +      DL     +   ++++ELIWREF+  ++ 
Sbjct: 228 AMENGTSRLGVYLRFGVVSIRKMMKK-----ADL-----ANEKTFMSELIWREFFMTILY 277

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P   +   F    ++IEW  +    + WK G TG+ I+DA MR+LNT G+MHNR+RM+
Sbjct: 278 HFPH-TVDNAFRSKYDRIEWRNNESEFEKWKNGQTGYAIVDAGMRELNTTGYMHNRVRML 336

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K LL+DWR GE YF  +LLD DL++N G WQWAA +G D+ PYFRIFNP  Q  
Sbjct: 337 VASFLCKHLLIDWRWGERYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPITQKD 396

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FD    +I+ W+PE                     + +Y   +VDHK+A    L  Y  
Sbjct: 397 KFDKNYKYIKQWVPEFE-------------------TDDYVEKMVDHKEARERCLKTYKE 437

Query: 477 A 477
           A
Sbjct: 438 A 438


>gi|90415238|ref|ZP_01223172.1| putative photolyase [marine gamma proteobacterium HTCC2207]
 gi|90332561|gb|EAS47731.1| putative photolyase [marine gamma proteobacterium HTCC2207]
          Length = 445

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 144/444 (32%), Positives = 225/444 (50%), Gaps = 40/444 (9%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           +++ +L  + KSL  K  +F         D++  L           +++NR YE   + R
Sbjct: 21  WLHHALQSLDKSLDGKLNIFS-------GDALAILSELSASMSAKAVYWNRCYEPQSIER 73

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSL 177
           D  ++ RL+   +  +SF+ S+L  P  +L      YKV+TP+ R+  +Q +  A  + L
Sbjct: 74  DANIKTRLKEAGLDVQSFNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLQKV--APRQPL 131

Query: 178 PVPA----IRLTGPVTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
           PVP     ++    +T  ++      D+  + +   + I E  A   L  F    +  Y 
Sbjct: 132 PVPKTLDLVKADNSLTVEDLSLLPAIDWD-KKLHGDWDISEDGAKDRLDDFVFNGIQDYR 190

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E R+ P  +  S+LSPY   G +S               LI  +S   ++L+EL WREF 
Sbjct: 191 EGRNFPNKKNVSRLSPYFHFGQMSVNTA--WYAANDAAALIDNESNLDTFLSELGWREFS 248

Query: 292 RHLMAFYPSVCMGK-----PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            +L+  +P +            PW +    N D+ L +AW++G TG+P++DA MR+L   
Sbjct: 249 YYLLYHFPKLPTDNLQQRFNVFPWAK----NTDAEL-KAWQKGKTGYPLVDAGMRELYGT 303

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNR+RM+  SF+VK+LL+ W  GE +F   L+D DLA+N+  WQW A  G D+ P+F
Sbjct: 304 GYMHNRVRMVVGSFMVKNLLIHWHSGERWFWDCLVDADLAANSASWQWIAGCGADAAPFF 363

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPL 458
           RIFNP  Q ++FD QG +IR  +PEL  +P +YIHAP  WL   D        +  +YP 
Sbjct: 364 RIFNPITQSEKFDKQGDYIRRHVPELAEMPAKYIHAP--WLAPADVLAAAGVEIGTDYPA 421

Query: 459 PIVDHKKACHHTLNQYYAAKKQSL 482
           PI+D K++    L  +   K   L
Sbjct: 422 PIIDIKESRERALAAFKMTKNDVL 445


>gi|318042779|ref|ZP_07974735.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101]
          Length = 510

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 174/498 (34%), Positives = 234/498 (46%), Gaps = 55/498 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN  L  A   +   V  VF+  P       ++  +  F+  SL ++Q+
Sbjct: 7   LFWHRRDLRLADNLGLATAAAAT-PAVTGVFVLDPAILGAPDMAPARVWFLLESLRELQQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S  + G      +     D  + L           + +NR  E     RD+ +   LQ  
Sbjct: 66  SWREAGSRLFVLE----GDPEQVLPQLAEALAAPVVAWNRDVEPYGRARDRRVAAALQAA 121

Query: 131 VICKSFD-DSVLLPPGSILNHALQMYKVYTPF---------RKALI-------------- 166
                 D D +L+ P ++       Y+VY PF         RKA                
Sbjct: 122 GRKVLVDWDQLLVAPEALKTGGGDPYRVYGPFLRNWRGQVERKAAAGSALSGGVEPVAAP 181

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRK 221
             LV  D  +LP P   L   +   +     +   QA D     P  P GE  AL  L+ 
Sbjct: 182 AGLVDLDPEALPEPRSALWAQLPLRDSLPTLEELSQAFDGGDLCPCRP-GEAAALVQLQA 240

Query: 222 FCKEK--------VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL--L 271
           FC           ++ Y   R++P   GTS LS  L  G LSPRQ W   ++       L
Sbjct: 241 FCDGGGASSSRIPLFAYEPGRNMPGEAGTSGLSAALKFGTLSPRQAWAAAQQARQVAEAL 300

Query: 272 IKPKSGAFS---WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
              +    S   W  EL WREFY+  +  +P +  G P+ P   +  W+      +AW +
Sbjct: 301 GGAEEAIASIGVWEQELAWREFYQQALFHFPELAEG-PYRPQWRQFPWDNHQGHYEAWCE 359

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG PIIDAAMRQLN  GWMHNR RMI AS+LVKDL+ DWR GE  FM +L+DGDLA+N
Sbjct: 360 GLTGMPIIDAAMRQLNESGWMHNRCRMIVASYLVKDLICDWRWGETAFMQRLVDGDLAAN 419

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWL 447
           NGGWQW+AS+G D  P  RIFNP  Q  +FDP G +IRHWLPEL +V T+  +    + +
Sbjct: 420 NGGWQWSASSGMDPKP-LRIFNPATQASKFDPTGAYIRHWLPELRHVNTKDLLSGEIAPM 478

Query: 448 DKNDLSLNYPLPIVDHKK 465
           ++      YP  +V HKK
Sbjct: 479 ERR----GYPAQVVSHKK 492


>gi|118464028|ref|YP_883059.1| Phr protein [Mycobacterium avium 104]
 gi|118165315|gb|ABK66212.1| Phr protein [Mycobacterium avium 104]
          Length = 442

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 153/474 (32%), Positives = 228/474 (48%), Gaps = 48/474 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ D+ AL AA  +SD +V+A F+  P   R  G   R+  F+  SL  ++ 
Sbjct: 4   LLWFRRDLRLHDHPALSAAA-DSD-EVLACFVLDPRLQRSSG--PRRLQFLGDSLRVLRD 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  + +V +        +  + + +       + +  +  +     RRD  +   L   
Sbjct: 60  ELDGRLLVTRGRPDIRIPEIAKAIGA-------SSVHVSEDFTPFGKRRDARVRAALAS- 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--- 187
           V   +     L+PPG +       Y+V+TPF +       +   ++    A R   P   
Sbjct: 112 VPLVATGSPYLVPPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPAKTGAASA-RWLDPARL 170

Query: 188 -VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +T   IP     P   +D     GE  A +  + F    +  Y + R  P I+GTS++S
Sbjct: 171 GITACEIPD----PGATLD--LAAGEAAARNQWKSFVDNGLANYADDRHRPDIEGTSRMS 224

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR           DL ++  +GA ++L EL +R+FY  ++   P+      
Sbjct: 225 AHLKFGTIHPRTL-------VADLDLR-TAGARAYLRELAFRDFYADVLHHRPASAWRN- 275

Query: 307 FIPWTEKIE------WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              W    +       ++     +AWK G TGFP +DA MRQL   G+MHNR+RM  ASF
Sbjct: 276 ---WNSAFDAIRTDTGDEAGRRFEAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASF 332

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDL + W+ G  +F+ QL+DGDLA+N  GWQW A  G D+ PYFR+FNP  QG++FDP
Sbjct: 333 LVKDLHLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDP 392

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL     +    PH  L   +    YP PIVDH       L +Y
Sbjct: 393 SGDYIRRWVPEL-----RCADDPH--LRTGERPPGYPAPIVDHATERAEALRRY 439


>gi|83951316|ref|ZP_00960048.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM]
 gi|83836322|gb|EAP75619.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM]
          Length = 473

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 157/483 (32%), Positives = 226/483 (46%), Gaps = 52/483 (10%)

Query: 21  TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG--IV 78
           +D+ AL AA       VI V I   +    HG+ A     +   +  + ++L++KG  ++
Sbjct: 16  SDHPALRAAVARG-GPVIPVMIRDDQM---HGLGAAPKWRLGLGIEAMGRALAEKGSRLI 71

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFD 137
            +  Q +        L +   +     +++ R Y+   + RD+ +++ L    V  +S  
Sbjct: 72  LRSGQAAEV------LSALVEETGAGAVYWTRAYDPESIARDRGVKETLVAAGVEAQSHA 125

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197
             +L  P  +       YKVYTP+  A+    V A L +   PA  +T P          
Sbjct: 126 GHLLFEPWEVETGQGSYYKVYTPYWNAVKSRDVAAPLTA---PA-EITAPAHWPESEDLD 181

Query: 198 DYPFQAID--------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
           D+   A          P   +GE  A   L  F  + +  Y  +RD+P   GTS LS  L
Sbjct: 182 DWALGAAMQRGAAVCLPHQHVGEATAQGRLGAFMAQGIAEYRARRDLPGEAGTSGLSENL 241

Query: 250 SIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK- 305
           S+G +S RQCW+   R ++E         +GA +W  EL+WREF  HL+   P +  G  
Sbjct: 242 SLGEISIRQCWHAAMRARQEGA-------AGAETWAKELVWREFAYHLIYHTPRLASGNW 294

Query: 306 ----PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                  PW E      DS  + AWKQG TG   +DAAMR++   G MHNR RM+ AS+L
Sbjct: 295 REEWDGFPWREA----GDSPEVMAWKQGRTGVEFVDAAMREMYVTGKMHNRARMVVASYL 350

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL  WR+G+ +F   L D D+ASN  GWQW A +G D+ P+FR+FNP  Q ++FD  
Sbjct: 351 TKHLLTHWRVGQRWFEEHLSDWDVASNALGWQWVAGSGPDAAPFFRVFNPDTQAEKFDKG 410

Query: 422 GTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYY 475
           G + R W+ E  + P      Y  A P SW      S  YP  PIV  K+     L  Y 
Sbjct: 411 GAYRRAWIAEGQDAPPDTALAYFEAIPQSW--NLSASRRYPDSPIVGLKEGRQAALAAYE 468

Query: 476 AAK 478
           A K
Sbjct: 469 ARK 471


>gi|325981909|ref|YP_004294311.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
 gi|325531428|gb|ADZ26149.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
          Length = 434

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 154/475 (32%), Positives = 223/475 (46%), Gaps = 47/475 (9%)

Query: 7   MSVHLV--WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS  LV  W R DLR+ DN  L  A   S   V+ VFI  P        +  +  FIY +
Sbjct: 1   MSASLVVFWFRRDLRLDDNVGLSHAL-ASGQPVLPVFIFDPSILTGLPENDARVTFIYDT 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  ++  L ++   +       + +SIE  D       VT ++ N  YE     RD+ + 
Sbjct: 60  LQTLRTQLEER---YSSSIALYYGNSIEVFDQILRLHSVTAVYANHDYEPYARERDEAVC 116

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L+ R +   ++ D VL     I   +   Y VYTP+     +   +  LR+       
Sbjct: 117 EWLKARSVAFNTYKDHVLFEKNEIAKDSGGPYVVYTPYMHKWRKVQSETTLRAYSTSE-- 174

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY-YYVEQRDIPAIQGT 242
                   N+ +    P  ++  +  +  ++A+ I       K+  +Y   RD PA+  T
Sbjct: 175 -----KLGNMIKHLHSPNLSLTDIGFV--RSAVTIPASRLDTKLLQHYAHDRDFPALTAT 227

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S L P+L  G +S RQ + +      D+            NELIWREF+  ++  +P   
Sbjct: 228 SLLGPHLRFGTISIRQVFQQALNTSNDIFG----------NELIWREFFSQILWHFPHT- 276

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               F P  ++I+W   +   + W +G TG+P++DA MRQLN  G MHNR+RMITASFL 
Sbjct: 277 QNSSFKPRYDRIQWRNSAADFERWCKGMTGYPLVDAGMRQLNATGTMHNRVRMITASFLC 336

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE YF  +LLD D+ASN G WQW A  G D+ PYFRIFNP  Q K+FD   
Sbjct: 337 KHLLIDWRWGEAYFAEKLLDYDMASNVGNWQWVAGCGVDAAPYFRIFNPETQIKKFDKNF 396

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           ++I+ W+ +    PT                  YP P++ H  A    L  Y  A
Sbjct: 397 SYIQTWVNDW-RTPT------------------YPAPMIKHTDARARCLETYQQA 432


>gi|242372923|ref|ZP_04818497.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           M23864:W1]
 gi|242349407|gb|EES41008.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           M23864:W1]
          Length = 457

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/340 (36%), Positives = 185/340 (54%), Gaps = 18/340 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
             P    N+  + YKV+T F K     L++  + S  +  I   G  +   +    DY  
Sbjct: 129 FKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRSVFSYDIKDIAKMGVKSQQKVKG--DYS- 185

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
                 + I E +A +    F  + +  Y   R+      TSQLS YL+ GVL   Q +N
Sbjct: 186 -----QYGISEADAQYRWSDFLDKDIENYNTNREYLPEVLTSQLSIYLAYGVLDIIQIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L E +     K +    S++ ELI+REFY  LM +YP     + F      ++W+ +  
Sbjct: 241 DLLENYD----KDEQNYESFIRELIFREFYYVLMTYYPETAH-QSFKDKYRDLQWSYNKE 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
               WK+G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL +DW  GEEYF  +L+
Sbjct: 296 NFNLWKEGKTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFIDWTWGEEYFRQKLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD    +I+ ++  LN++  +Y+H
Sbjct: 356 DYDSASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKDALYIKKFVQTLNDIDAKYLH 415

Query: 442 APHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
             H +  +      +L  +YP  IV+H ++  H ++++ A
Sbjct: 416 DTHKYERQIKEQGIELGKDYPKQIVNHSESRTHVMSEFKA 455


>gi|268317159|ref|YP_003290878.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252]
 gi|262334693|gb|ACY48490.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252]
          Length = 486

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 157/476 (32%), Positives = 226/476 (47%), Gaps = 23/476 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L++   DLR+ +N AL AA       ++ +FI      R     A +  +++ SL  +  
Sbjct: 6   LLFTPGDLRLAENPALDAALRTGH-PIVPLFIWPRRAERFERPGAARRWWLHHSLAALDA 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L ++G           +D  E L        V  L +N     +E R    +   L+ R
Sbjct: 65  ELQRRGSRLILRVA---EDPAEVLIQLLETLPVAALCWNLPLLPHERRLASSIAPVLRRR 121

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I         LL    +   +  +Y+V+TPF KAL Q  +     +  +P  R+  P +
Sbjct: 122 SIRLIETVGRTLLDLEQLRTKSGDVYRVFTPFWKALRQQYIPP---APFLPPARIPAPSS 178

Query: 190 -PSN--------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            P +        +PR  D+  + I   +  GE  A   LR F    + +Y   RD    +
Sbjct: 179 WPDSDTLESLALLPRP-DWASETIASHWLPGEAAAWSTLRTFLAYGLPHYDRARDRLDQE 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LSPYL+ G +SP   W  + E     +      AF    +L WREF  +L+  +P 
Sbjct: 238 ATSKLSPYLANGEISPHLLWRVVGEAQRAGVSSKAVEAFR--RQLAWREFGYYLLYHFPE 295

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P  P      W  ++  L+AW+ G TG P+IDAAMRQL   GWMHNR R++ AS 
Sbjct: 296 TTH-RPLRPEWSDFPWRTEAPELEAWQHGRTGIPVIDAAMRQLWQSGWMHNRTRLLVASL 354

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+L + W  G E+F   L+D DLA+N  GWQW A  G D+ PYFRIFNP +Q K+FDP
Sbjct: 355 LTKNLRIHWLRGAEWFWDTLVDADLANNTLGWQWTAGCGADAAPYFRIFNPVLQSKKFDP 414

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474
           +G +IR WLPEL  +P   IHAP       ++   + YP PIV    +    L  Y
Sbjct: 415 EGRYIRRWLPELGRLPAPCIHAPWEAPSCAEMLREIGYPSPIVSLMDSREEALALY 470


>gi|315501047|ref|YP_004079934.1| deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
 gi|315407666|gb|ADU05783.1| Deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
          Length = 440

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 140/457 (30%), Positives = 231/457 (50%), Gaps = 41/457 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V    DLR+ D+ AL AAC   D +V+ +++  P   +   +S  ++ F++ SL  +++
Sbjct: 7   VVLFTRDLRVHDHPALAAACSAFD-RVVPLYVLDPALQK---LSPNRTRFLHQSLADLRE 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--RRDKLLEKRL- 127
           +L ++G      +     ++++      L ++V         +++    RR++ L     
Sbjct: 63  ALRKRGGDLVIRRGDPVAETVK------LARKVGAEGVGLSADVSRYAHRRERRLRAECD 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +HR+  + F    ++ PG++       Y+V++P+ +A  Q +   D  + P   +RL   
Sbjct: 117 RHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAW-QGVRWRDELAAPK-RVRLPDG 174

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V P  +P     P +   P   +G +             +  Y +  D  A   TS+LSP
Sbjct: 175 VDPGRLPD----PPKGDSPDAAVGGEAVARRRLTAWLPTLDRYDDIHDDMAGDETSRLSP 230

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS--WLNELIWREFYRHLMAFYPSVCMGK 305
           YL  G +SP             L +  ++G +   ++ +L WR+FY  ++A +P +    
Sbjct: 231 YLRFGCVSP-------------LAVATRAGGWDGPFVRQLCWRDFYHQVVAGFPDLST-- 275

Query: 306 PFIPWTE--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             + +    + +W  D H   AW +G TG PI+DA MRQL   GWMHNR R+ITA +L K
Sbjct: 276 --VAYRRGAREDWRDDPHAFDAWAEGRTGMPIVDAGMRQLRAEGWMHNRARLITAGYLTK 333

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L +DWR G E F   LLDGD  +N+G WQW A TGND+ PY R FNP  Q +R+DP G 
Sbjct: 334 HLGLDWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPY-RGFNPVRQAERYDPDGA 392

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           ++R W+PEL +V  + +H P    D+   +L+YP P+
Sbjct: 393 YVRRWVPELASVAGKAVHQPWRLPDEVRHTLDYPPPL 429


>gi|227502618|ref|ZP_03932667.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           accolens ATCC 49725]
 gi|227076658|gb|EEI14621.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           accolens ATCC 49725]
          Length = 445

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 220/447 (49%), Gaps = 44/447 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAAC------HNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
             L+W R+DLR++DN+AL  A       + S  +++AV +  P       +      +  
Sbjct: 2   TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPAYPSTRPLGGATHWWRE 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE--INEV--R 118
            SL  + + L+ +G+           D+   +     +     + +NR+Y   + EV  R
Sbjct: 62  RSLHALAQELASRGVKL----LRATGDARTVIPRIAHEVGADTVTWNRRYHGPLREVDAR 117

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
               L     + + C  F    L+ P  + N     YKV+TPF  A    L  AD   LP
Sbjct: 118 VKATLADAGINAISCPGF---TLVEPWEVTNAQGNPYKVFTPFAAAARSQL--ADEEPLP 172

Query: 179 VP---AIRLTGPVTPSNIPR-FFDYP--FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
           VP   A R  G    S+ P    D P    ++   +  GE  A   L +     + +Y E
Sbjct: 173 VPELLAGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLAQL---DLAHYAE 229

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RDIPA   TS LSP+L  G +SPR+ W    EE       P +  F   +EL+WR+F  
Sbjct: 230 ERDIPARNATSLLSPHLRFGEVSPREVWVAAAEE-------PDAEKFQ--SELLWRDFAW 280

Query: 293 HLMAFYPSVC---MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           H +   P +    + + F     + +W+ +   L+ W++G TG P++DA MR+L   G+M
Sbjct: 281 HRLYHLPDLATRNVRQKF----NRFDWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYM 336

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM+  SFL K+L + WR+GEE+F   L+D D ASN   WQW A  G+D+ P+FRIF
Sbjct: 337 HNRVRMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIF 396

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVP 436
           NP  Q +RFDP G +IR W P L+  P
Sbjct: 397 NPETQAQRFDPDGAYIRQWAPTLSAPP 423


>gi|239940078|ref|ZP_04692015.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
           15998]
 gi|239986566|ref|ZP_04707230.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
           11379]
          Length = 451

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 143/464 (30%), Positives = 224/464 (48%), Gaps = 32/464 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V   +DLR+ D+  L AA  ++D +V+ +F+      R    +  +  F+   L  +  
Sbjct: 1   MVLFTSDLRLHDHPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLADLDT 59

Query: 71  SLSQKG---IVFQYHQCSNFDDSIE--WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            L  +G   IV +          +E    DS  +   V+     R+  I E       E 
Sbjct: 60  GLRDRGGRLIVRRGGTAREVKRVVEQTGADSVHIAAGVSGYAAQREERIREALAGTGCEL 119

Query: 126 RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIR 183
           R+   V+         L PG ++       + V+TP+ +      V+    +L  P  +R
Sbjct: 120 RVHDAVVTA-------LAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRG---TLAAPRTVR 169

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +   V+   +P       + + P     GE+    ++  +    +  Y +  D  A   T
Sbjct: 170 VPDGVSGDALPDR--DAVKGVSPGLARGGEEAGRKLVTSWLHGPMAAYEDGHDDLAGDAT 227

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP+L  G +S  +  NR +E       K   G  +++ +L WR+F+  ++A  P   
Sbjct: 228 SRLSPHLHFGTVSAAELANRARE-------KGGPGGEAFVRQLAWRDFHHQVLAARPDAS 280

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               + P  ++  W  D   ++AWK G TG+P++DAAMRQL   GWMHNR RM+TASFL 
Sbjct: 281 W-SDYRPRHDR--WRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTASFLT 337

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGKRFDP G
Sbjct: 338 KTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPN-RVLNPVIQGKRFDPDG 396

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
            ++R W+PEL  V    +H P      +   ++YP P+VD  +A
Sbjct: 397 AYVRRWVPELAEVEGPAVHEPWKLEGLDRAGVDYPDPVVDLAEA 440


>gi|113954039|ref|YP_729488.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
 gi|113881390|gb|ABI46348.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
          Length = 492

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 165/487 (33%), Positives = 233/487 (47%), Gaps = 49/487 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG----ISARQSHFIYASLL 66
           L W R DLR+ DN  L AA   S A V  V++  P   +       ++  +  F+  SL 
Sbjct: 7   LFWHRRDLRLADNLGLQAAEAISPA-VTGVYVLDPALIQPPESLPPMAPARLWFLVESLR 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+     G            D ++ L           + ++R  E     RD+ + K 
Sbjct: 66  ELQQRWRDVGSRL----LVVAGDPVQLLPRLASLLEAPAVVWSRDVEPYARERDRQVAKA 121

Query: 127 LQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPF------------------RKALIQ 167
           LQ        D D +LL P  I       Y+V+ PF                   +ALI 
Sbjct: 122 LQADGCKVLVDWDQLLLAPDLIKTGGGDPYRVFGPFLRNWRGQVERSGPSTVDPPRALID 181

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRF----FDYPFQAID--PMFPIGEQNALHILRK 221
             ++A++    +      G +      +      ++ F+  D  P  P GE  A   L  
Sbjct: 182 --LEAEMLEAVLGGEGALGRLCTEGQRQLEQLQVEHGFRGTDLCPSRP-GEAAAAAQLAA 238

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGA 278
           F    +  Y   R+ P + GTS LS  LS+G +SPRQ W     +KE  +    + +   
Sbjct: 239 FADGALLAYEPDRNFPGMPGTSYLSAGLSVGTVSPRQAWCAAQGVKE--IARSDEQQQAI 296

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
             W  EL WREFY+  +  +P +  G P+     +  W  +S   +AW++G TG PIIDA
Sbjct: 297 TVWEQELCWREFYQQALFHFPELADG-PYREQWRRFPWENNSDWFEAWREGQTGMPIIDA 355

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           AMRQLN  GWMHNR RMI ASFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+
Sbjct: 356 AMRQLNQSGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASS 415

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYP 457
           G D  P  RIFNP  Q  +FD +G +IR W+PEL +V T+  I      L++     +YP
Sbjct: 416 GMDPKP-LRIFNPATQATKFDAEGEYIREWVPELRHVNTKDLISGEIPALERR----SYP 470

Query: 458 LPIVDHK 464
             +++HK
Sbjct: 471 EQLINHK 477


>gi|225010806|ref|ZP_03701274.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-3C]
 gi|225005014|gb|EEG42968.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-3C]
          Length = 438

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 154/479 (32%), Positives = 230/479 (48%), Gaps = 61/479 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR  DN  L  A   S  KV+ +FI   E          +  FI   L ++ +
Sbjct: 7   IFWFRRDLRYNDNTGLSKALL-SGKKVLPIFIFDTEILDMLPEKDPRLQFIVNQLHEINQ 65

Query: 71  SLS---QKGIVFQYHQC--SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +   Q G+   YH    + F   +E  + +    +V  ++ N  YE   V+RD  ++ 
Sbjct: 66  HFNTQFQSGVQ-SYHNSPLNVFKSLLEAANDF----KVCGVYTNEDYEPYAVQRDLEIKA 120

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADLRSLPVPA 181
            L  + +   SF D V+     +     + Y VYTP++    ++ +       + + +P 
Sbjct: 121 YLATKSVDFHSFKDQVVFEKDQVTKEDGKPYVVYTPYKNKWLSIFEQQYPNGFQEIDMPL 180

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAI 239
             L    T             ++  M  +G  +A   + K+      +  Y  +R+ P+I
Sbjct: 181 ENLYKMNT-------------SLHDMKALGFSSAEIEVPKYSVTSALIEAYEAKRNFPSI 227

Query: 240 Q-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS+L P+L  G +S R    + K +        K+  F  L+ELIWREF+  ++  +
Sbjct: 228 ENGTSKLGPHLRFGTVSIRALVQKAKGQ--------KNQVF--LSELIWREFFMQILWHF 277

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P       F P  ++IEW  ++   + WK G TG+P++DA MR+LN  G MHNR+RM+ A
Sbjct: 278 PHTPTN-AFKPAYDRIEWRNNAAEFEHWKNGTTGYPLVDAGMRELNATGTMHNRVRMLVA 336

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF  +LLD +LASN G WQWAA +G D+ PYFRIFNPT Q  +F
Sbjct: 337 SFLCKHLLIDWRWGEAYFAEKLLDFELASNVGNWQWAAGSGVDAAPYFRIFNPTTQIDKF 396

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           D Q  +++ W+ +L                     L YP PIVDHK A    L  Y  A
Sbjct: 397 DKQHIYLKKWVSDLG-------------------ELTYPSPIVDHKMARERCLATYKKA 436


>gi|333028704|ref|ZP_08456768.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
           Tu6071]
 gi|332748556|gb|EGJ78997.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
           Tu6071]
          Length = 481

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 139/472 (29%), Positives = 234/472 (49%), Gaps = 40/472 (8%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A+   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +A ++ F+ 
Sbjct: 23  AEPAVKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLA 81

Query: 63  ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR- 119
             L  +   L ++G  +V +  + +     +  L      +RV        Y  N   R 
Sbjct: 82  DCLGDLDAGLRERGGRLVVRAGEPAQV---VRELVGSTGAERVHVAAGVSAYARNRADRL 138

Query: 120 ----DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL- 174
               +    + ++H  +  +      LPPG ++  +   + V+TP+ +      ++  L 
Sbjct: 139 RAALEGTGAELVEHEAVITA------LPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLG 192

Query: 175 --RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYV 231
             R L VP+      V    +PR  D   + + P     GE+     L  + ++ +  Y 
Sbjct: 193 APRKLSVPS-----KVRSDGVPRRED--VEGVSPGLARGGEREGRARLADWRRDGISRYE 245

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           +  D  A  GTS+LSPYL  G LS  +C +R +           +GA +++ +L WR+F+
Sbjct: 246 DLHDDLAGDGTSRLSPYLHFGALSAAECVHRAR-------AVGGAGADAFVRQLCWRDFH 298

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             ++A  P+    + + P  +      D+ H   AW++G TG+P++DAAMRQL   GWMH
Sbjct: 299 HQVLAARPAAAH-EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMH 357

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R++ ASFL K L +DWR+G  +F+  L+DGDL +N   WQW A TG D+ P  R+ N
Sbjct: 358 NRGRLLAASFLTKTLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLN 416

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           P  Q +++DP+G ++RHW+PEL  +  + +H P  W    +    YP P+VD
Sbjct: 417 PLTQARKYDPEGDYVRHWVPELRGIEGRAVHEP--WKRPREEREGYPEPLVD 466


>gi|296128975|ref|YP_003636225.1| Deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM
           20109]
 gi|296020790|gb|ADG74026.1| Deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM
           20109]
          Length = 457

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 143/459 (31%), Positives = 221/459 (48%), Gaps = 27/459 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W R DLR++D+ AL AA   + A   +V+A+++  P  WR  G    +  ++ ASL  
Sbjct: 4   ICWFRRDLRLSDHPALVAAVAEARAAGDEVVALYVVDPALWRAAGTP--RLAYLAASLRS 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + ++   + +V ++ +          + +   Q   + +  +   E    RRD+ +E  L
Sbjct: 62  LDEATGGR-LVVRHGRADRV------VPAVARQVGASSVHVSAATEPYGRRRDEAVEAAL 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA-LIQNLVQADLRSLPVPAIRLTG 186
              ++      +V   PG +       Y+V+TPFR A L     +   R   VP   L  
Sbjct: 115 DVPLVRTGCPYAVA--PGRLRTGQGGPYQVFTPFRGAWLDHGWHEPAPRPRDVPWAALAS 172

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              P       D P   +  + P GE+ A      F +E +  Y   R+ P +  TS +S
Sbjct: 173 DGLP-------DAPATDVT-LPPAGERAARERWHAFVREDLAGYDVDRNRPDLDVTSWMS 224

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG-- 304
            +L  G + PR     L +              ++ +EL WREF+  ++  +P+      
Sbjct: 225 VHLKHGEIHPRTLLADLADAGRGARGPLADSVATYRSELAWREFHADVLWHHPAAARTSL 284

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +P               AW  G TG+P++DA MRQL   GW+HNR+RM+ ASFLVKD
Sbjct: 285 REVVPQDAWATGPPADRAFAAWTDGRTGYPLVDAGMRQLRAQGWVHNRVRMVVASFLVKD 344

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G  +FM  L+DGD+  N   WQW A TG D+ PYFR+FNP  Q ++FDP GT+
Sbjct: 345 LHLPWQRGAAHFMEWLVDGDVPQNQLNWQWVAGTGRDAAPYFRVFNPVTQARKFDPDGTY 404

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           +R W+PEL +VP + +H P  W     L   YP  +VDH
Sbjct: 405 VRRWVPELRDVPDRAVHEP--WTLPGGLPAGYPERVVDH 441


>gi|254875029|ref|ZP_05247739.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254841028|gb|EET19464.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
           subsp. tularensis MA00-2987]
          Length = 355

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 199/365 (54%), Gaps = 40/365 (10%)

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQAD---LRSLP 178
           QH++   SF+ S+L+ P          YKVYTPF K LI+      N+ + +   LR L 
Sbjct: 3   QHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLRKLN 62

Query: 179 ----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               + +++L  P           + +Q I   + IGE  +  IL +F   KV  Y   R
Sbjct: 63  NSENLDSLKLIEP----------KHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTAR 112

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D  +   TS+LSPYL  G +SP Q +N ++   +D +    +    ++ EL+WR+F  + 
Sbjct: 113 DFMSTDSTSKLSPYLHFGEISPNQIFNAVQS--LDYI---GNNEEHFIKELVWRDFSYYQ 167

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           + +YP +   K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+MHNR+R
Sbjct: 168 IYYYPEL-HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVR 226

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q
Sbjct: 227 MIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQ 286

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL--NYPLPIVDHKKA 466
            ++F+    +IR ++PEL  +P + I  P  W      L +  ++L  NYP PIVD KK+
Sbjct: 287 AEKFEAY-EYIRKYVPELKLLPNKLIAKP--WEASELVLQEAGITLGQNYPKPIVDLKKS 343

Query: 467 CHHTL 471
               L
Sbjct: 344 RDRAL 348


>gi|311894408|dbj|BAJ26816.1| putative deoxyribodipyrimidine photo-lyase [Kitasatospora setae
           KM-6054]
          Length = 441

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 230/465 (49%), Gaps = 35/465 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ +V    DLR+ DN AL+AA   +D +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MTLAIVLFTQDLRLHDNPALHAAHTRAD-QVVPLFVTDPAVAAAGFAAPNRVAFLSGCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  +L + G      +     D+ E       +   T +           RR++ L + 
Sbjct: 60  ELDAALRRTGSRLTVREG----DTAEQTAKLAAETGATAVHVAAGVSTYARRREQRLRRA 115

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRL 184
           L  R+     D S+  +PPG++       Y V+TP+ +A  Q   +A    LP P A+R 
Sbjct: 116 LGERL--HVHDGSLTAVPPGAVRPIGRDHYAVFTPYLRAWQQTPRRA---PLPAPRALRT 170

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              +  + +P       +  DP    GE  A    + +  +    Y +  D  A   TS 
Sbjct: 171 PDDLPSAPLPTATPTARRLPDP----GEAAARRTWQHWHADD---YADLHDALADDATSH 223

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LS  +  + L E+      +  +GA ++  +L+WR+F+  ++A  P+    
Sbjct: 224 LSPYLHFGCLSANELAH-LAEQ------RGGTGAEAFARQLVWRDFHHQVLAARPAAAHS 276

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             + P    + W+ D     AW+ G TGFP+IDAAMRQL   GWMHNR R++TASFL K 
Sbjct: 277 D-YRP--RPVPWHNDPDEFAAWRDGRTGFPVIDAAMRQLAETGWMHNRARLLTASFLSKS 333

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L  DWR G  +F+  L+DGDLA+N   WQW A TG D+ P  R+ NP +Q  R DP+GT+
Sbjct: 334 LHHDWRPGAAHFLHHLVDGDLANNQLNWQWTAGTGTDTRPN-RVLNPLVQADRHDPEGTY 392

Query: 425 IRHWLPELNNVPTQYIHAP-HSWLDKNDLSLNYPLPIVDHKKACH 468
           +R WLPEL ++PTQ IH P  S L   D    YP PI+      H
Sbjct: 393 VRRWLPELAHLPTQDIHRPWQSLLCPAD----YPDPIIPPDATGH 433


>gi|195997383|ref|XP_002108560.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens]
 gi|190589336|gb|EDV29358.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens]
          Length = 497

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 156/497 (31%), Positives = 239/497 (48%), Gaps = 38/497 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQHGISARQSHFIYASL 65
           M   +VWLR DLR+ DN AL+ A       +I +    TP +W+   +      +++ SL
Sbjct: 1   MVCTVVWLRYDLRLIDNPALFHAAKRGHVVIIYILDQETPGKWK---LGKASLWWLHHSL 57

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +Q  L +  I     + +   D +  L    LQ R   +++NR YE   V+RD+ +E+
Sbjct: 58  KSLQNDLLKFNIPLILRRGA---DPLTILRQVLLQSRADAVYWNRCYEPYAVKRDQSIEE 114

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVY--------------TPFRKALIQNLV 170
            L+   V   SF   +L  P ++ +   + +K+Y               P+ K    N +
Sbjct: 115 ALKVDDVTVGSFQAGLLYEPWAVKSAKDEPFKLYIMYWNRCLSSDQPRKPYDKPRFNNTL 174

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
              +++  + +  L             D+  +    +   GE  A+  L++F K K+  Y
Sbjct: 175 DIKVQTDTLDSWHLVSAKK--------DWKDELKIVIGCPGEDGAIRKLKEFIKYKLVDY 226

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + ++      TSQLS +L  G +SP   W+  KE  V L   P   +  +L EL WR+F
Sbjct: 227 RKGKETVWPSKTSQLSTHLHFGEISPFVVWHTAKES-VHLRSVPSDSSQKFLTELGWRDF 285

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             HL+ +YP        + + E I W  D   L+ W+QG TG+PI+DA MR+L   G + 
Sbjct: 286 CFHLLHYYPDFPEKSYKLNFDETI-WKVDKEKLKLWQQGKTGYPIVDAGMRELLNTGVIS 344

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
            R+R I ASFL K LL+ W+ G E+F   L+D DLA N+  WQ     G D   YF I N
Sbjct: 345 YRVRTIVASFLTKHLLIPWQNGAEWFWDTLVDADLALNSCSWQRITGCGADISSYFYIIN 404

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHK 464
           P  QG+RFD  G ++R W+PE+  +   YI     AP + L K  ++L   YP  IV+HK
Sbjct: 405 PVTQGERFDSDGNYVRKWIPEIAKLSNDYIQQPWEAPAAVLKKAGIALGKTYPKCIVNHK 464

Query: 465 KACHHTLNQYYAAKKQS 481
           KA    L ++   K+Q 
Sbjct: 465 KARDVALTKFAPLKRQE 481


>gi|134100631|ref|YP_001106292.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291006735|ref|ZP_06564708.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133913254|emb|CAM03367.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 448

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 146/474 (30%), Positives = 223/474 (47%), Gaps = 38/474 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +     DLR+ DN  L AA      +V+ +F+   +  R    S R++ F+  SL 
Sbjct: 1   MTTAIALFTRDLRVHDNPMLAAAAEAD--RVVPLFVLDDDIQRSRFASPRRTRFLDESLT 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSI---EWLDSYCLQ--QRVTKLFYNRQYEINEVRRDK 121
            + ++L   G      + +  D+     E +D+  +     V+     RQ  + E    +
Sbjct: 59  DLDENLRGLGGRLVLRRGALVDEVCRIAEEVDAAEVHICADVSGYAMRRQARLAEALSAQ 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLP 178
             E R    V+        + P G+  +H    + V+TP+ +  ++   +   A  R L 
Sbjct: 119 RRELRCHDEVVT-VLAPGRVTPGGADKDH----FTVFTPYLRRWLETGKRPPAAKPRRLR 173

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           +P+    GP               + D  +P GE        ++    V  Y E+ D  A
Sbjct: 174 LPSRLSIGPRPAGG----------SADGTWPGGETEGRRRADRWLGGGVRAYHERHDDLA 223

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TSQLSPYL  G LS R+  +R              G  +++ +L WR+F+  ++A  
Sbjct: 224 ADATSQLSPYLHFGCLSARELADRAGR---------GEGPEAFVRQLAWRDFHHQVLAAR 274

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     + + P  ++  W++D+  L+AWKQG TG PI+DA MRQL  +GWMHNR R+IT 
Sbjct: 275 PEAVH-EDYRPRGDR--WHRDADALRAWKQGRTGVPIVDAGMRQLLELGWMHNRARLITG 331

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K L +DWR G  +F   L+DGD+A+N   WQW A TG D+ P  R+ NP  Q  R+
Sbjct: 332 SFLTKSLYLDWRAGAWHFFDHLVDGDIANNCLNWQWVAGTGTDTRPN-RVLNPLRQADRY 390

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           D  G ++R W+PEL  +    +H P    D     L YP PIVD  +A    L+
Sbjct: 391 DAGGDYVRRWVPELAGLGAGDVHRPWRLGDDELGRLGYPAPIVDLDQARERFLD 444


>gi|225011846|ref|ZP_03702284.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-2A]
 gi|225004349|gb|EEG42321.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-2A]
          Length = 434

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 222/475 (46%), Gaps = 54/475 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V L W R DLRI DN  LY A    + +VI +FI   E  ++      +   I  +L  +
Sbjct: 4   VTLFWFRRDLRIQDNCGLYHALKGEN-RVIPIFIFDKEILKKLPKQDARVEMILLALGAI 62

Query: 69  QKSLSQ-KGIVFQYHQCSN--FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ + +  V +YH      F   I+       Q  + K+  N  YE     RD  ++ 
Sbjct: 63  DIAMKRNRCNVGKYHGTPKAIFSKLIK-------QWNIEKVICNEDYEPYASERDSEIKT 115

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   I  + + D V+     ++      YKVYTP+ +  ++   +  L+  P   + L
Sbjct: 116 LLEAAGIQFECYKDQVIFEKEEVVKGDGTPYKVYTPYSRKWLEKYQETPLQFYP-SEVEL 174

Query: 185 TGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               +  ++P     D  F+      P           +F    +  Y   R+ PA+  T
Sbjct: 175 DSLASNESLPDLNLSDLGFETSGIAQP---------EYRFDDTLIDQYEATRNFPALDQT 225

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+L  +L  G +S R+  N+      +  +K          ELIWREF+  ++  +P   
Sbjct: 226 SRLGAHLRFGTVSIRRLVNQASSRSNNTFLK----------ELIWREFFMQILWHFP-YT 274

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             K F P  E+I W  +    + W  G TG+P++DA MR+LN  G+MHNR+RM+  SFL 
Sbjct: 275 QQKSFKPQYERIIWRNNPDEFEKWCAGETGYPLVDAGMRELNETGFMHNRVRMLVGSFLC 334

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE YF  +LLD +++SN G WQW A  G D+ PYFRIFNP+ Q K+FD Q 
Sbjct: 335 KHLLIDWRWGESYFAEKLLDYEMSSNVGNWQWVAGCGVDAAPYFRIFNPSEQIKKFDKQL 394

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +I+ W+P                   N   L+YP PIVDHK A    L  Y  A
Sbjct: 395 QYIQKWVP-------------------NFQELDYPSPIVDHKYARERCLTTYKEA 430


>gi|311739236|ref|ZP_07713073.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305662|gb|EFQ81728.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 477

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 139/445 (31%), Positives = 215/445 (48%), Gaps = 42/445 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61
           TAM+  L+W R+DLR+ DN+AL  A   +   DA ++AV +  P       +    + + 
Sbjct: 42  TAMTC-LMWFRDDLRLHDNQALSRAATAASLGDAPLVAVVLDEPAYPGTRPLGGATTWWR 100

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L+  G+           D+ E +     +   T + + R+Y       D 
Sbjct: 101 ERSLYALAHDLADHGVEL----IRAAGDAREEIPRLAAELGATTVTWTRRYHGPLREVDA 156

Query: 122 LLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +++ L  +     S     L+ P  + N   Q YKV+TPF KA    +   +   +P  
Sbjct: 157 TVKETLTSQGTTATSLPGFTLVEPWEVTNGQGQPYKVFTPFSKAAASQVAGDEPEGVPEM 216

Query: 181 AIRLTG------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               +       P  P+      ++        +  GE  A   L +     +  Y E+R
Sbjct: 217 GASASSASAWPKPTEPAWAASLAEH--------WTPGEAGARERLAQL---DLANYAEER 265

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           DIPA+  TS LSP+L  G +SPR+ W              +  A  + +EL+WR+F  H 
Sbjct: 266 DIPALNATSLLSPHLRFGEVSPREVW---------FAAAEEPEAAKFHSELLWRDFAWHR 316

Query: 295 MAFYPSVC---MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +   P++    + + F    ++ +W+ D   L+ W+ G TG P++DA MR+L   G+MHN
Sbjct: 317 LYHLPNLATENVREKF----DRFDWSWDDPRLKDWQAGTTGIPLVDAGMRELWATGYMHN 372

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM+  SFL K+L + WR+GEE+F   L+D D ASN   WQW A  G+D+ P+FRIFNP
Sbjct: 373 RVRMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNP 432

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVP 436
             Q KRFDP G ++R W P L+  P
Sbjct: 433 ETQAKRFDPDGEYVRRWAPALSAPP 457


>gi|48478134|ref|YP_023840.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790]
 gi|48430782|gb|AAT43647.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790]
          Length = 431

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 149/465 (32%), Positives = 240/465 (51%), Gaps = 55/465 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASLLQ 67
           ++L   R DLR+ DN AL  + +N  A    +FI  P Q + +   + ++ +F+ +SL  
Sbjct: 1   MNLFIFRRDLRLYDNTALLKSLNNETA---TIFIMDPAQVKNNEYRSEKALNFMISSLYD 57

Query: 68  VQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEK 125
           +   +    G +  +H      D ++ L     ++ + +++ NR Y    ++RD ++ E 
Sbjct: 58  LMTDIEGNHGKLAVFHG-----DPVDVLKRLVNRENINEIYINRDYTPFSIKRDERIKEF 112

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            +++ +   + DD  L  P  +   +   +K +T F    ++  V+      PV  I+ +
Sbjct: 113 SIKNNIKFNALDDYFLSDP-ELRTGSGSFFKNFTAFYNRAMEINVKK-----PVYEIKKS 166

Query: 186 G--PVTPSNIP-RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              P+   ++  ++ +Y           G + A+  +  F K         RD P +  T
Sbjct: 167 NLIPIDGDDMELKYNNY-----------GRKTAIEKMHNFIKND----YSLRDFPELNMT 211

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS  +  G +S R+ ++ +K+               +  +L WR+FY ++   +P V 
Sbjct: 212 SFLSADIKFGNISIREAYHYIKDP-------------EFRRQLYWRDFYLYIAYHFPYV- 257

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G  F      I+W      + AWK G TG+PI+DAAMR LN  G+++NRLRMI +SFLV
Sbjct: 258 FGSNF-NRKYNIKWENKEKYIDAWKNGLTGYPIVDAAMRSLNETGYINNRLRMIVSSFLV 316

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL VDWRIGE+YF  +L+D D ASNNG WQW ASTG +S   +RI NP IQ K+FDP+ 
Sbjct: 317 KDLHVDWRIGEKYFAQKLIDYDPASNNGNWQWVASTGVNSRGMYRIINPWIQQKKFDPEC 376

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467
            FI+ ++ EL+++  + IH     L K  L+ NYP P+VDHK A 
Sbjct: 377 KFIKRYVNELSDLEPEIIHN----LYKIRLN-NYPAPLVDHKTAV 416


>gi|163736265|ref|ZP_02143684.1| Deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis BS107]
 gi|161390135|gb|EDQ14485.1| Deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis BS107]
          Length = 479

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 158/475 (33%), Positives = 231/475 (48%), Gaps = 30/475 (6%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W+R DLR+ DN AL AA       VI VFI          + A     +   L  + K L
Sbjct: 14  WVRRDLRLADNPALAAAVAAG-VPVIPVFIFET---LDEDLGAAPRFRLGLGLAHLAKEL 69

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
            Q+G      +      + E L     +     + + R Y+   + RD  ++++L+ + I
Sbjct: 70  EQRGARLILRRGP----AQEVLTQLITETGAGAVHWTRAYDPQAIARDTGIKEQLKGQGI 125

Query: 133 C-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVPAIRLTGP 187
             KSF   +L  P ++      MY+VY+P+ K++    +  L+ A  R +P PA   T  
Sbjct: 126 AAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSR-IPAPAHWPTSD 184

Query: 188 VTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              S  +          +     +GE  A   L +F   +V  Y + RD PA+  TS LS
Sbjct: 185 DLDSWQMAAAMRRGADVVAQYCRVGEDAAQERLAEFLDTRVADYKQDRDFPAVDATSGLS 244

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G +SPR+ W+      ++     KSGA  +L E++WREF  HLM   P + + + 
Sbjct: 245 ENLAWGEISPRRMWH----HGLEARRAGKSGAEHFLKEIVWREFAYHLMFHTPHI-LTRN 299

Query: 307 FIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           + P  E   W+ +D   + AW++G TG+  +DAAMR+L   G MHNR RMI ASFL K +
Sbjct: 300 WRPEWEHFNWSERDDDKVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVASFLTKHM 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L  WRIG+++F   L+D D ASN  GWQW A +G D+ P+FRIFNP  Q ++FDP+G + 
Sbjct: 360 LTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFDPKGRYQ 419

Query: 426 RHWLPELNNVPTQ-----YIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474
             W+ E    P Q     Y   P SW L   D       P +D K+     L  Y
Sbjct: 420 SAWIAEGQANPPQTALDFYRATPLSWELSPQDTRAE---PFLDLKEGRARALEAY 471


>gi|326387639|ref|ZP_08209245.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207685|gb|EGD58496.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 455

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 149/467 (31%), Positives = 221/467 (47%), Gaps = 50/467 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR+            ++  V+ V++   E  R   +      +++ SL  + +
Sbjct: 6   LVWLRQDLRLA--DQAAFLAAAAEGPVVPVYVLDDETPRHRRMGGASRWWLHHSLKSLDE 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L Q+G      +     +  E L      +RV  L +   +  N              R
Sbjct: 64  GLRQRGSRLILRRGPAHRELAE-LAREVGARRVHALAHVEPWWRN------------AER 110

Query: 131 VICKSFD-----DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            + K+ D        L PPG++L  +   YK+YTPF +AL + +     R +P P  R+ 
Sbjct: 111 AVAKTLDLVLHEGQYLAPPGTVLTGSGLPYKIYTPFWRALSERMPTH--RPVPAPG-RID 167

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIP 237
            P +  +  R  D+      P +  G        E  A   L  F   K   Y E R+ P
Sbjct: 168 APASWPDGDRLDDWTLVPTRPDWAAGFRTRWTPGEVGAHERLDMFIG-KASRYGEWRNFP 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMA 296
           +++GTS+LSP+L  G +S    W+ + +           G+ S +L E+ WR++  +++ 
Sbjct: 227 SVEGTSRLSPHLHFGEISAATVWHSVAD---------AGGSVSTFLGEVGWRDYAANVLL 277

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P    G+      E+  W +D+  L+AW+ G TG+PI+DA MR+L   GWMHNR+RMI
Sbjct: 278 QMPDYA-GRSAREAFERFPWREDADDLRAWQTGMTGYPIVDAGMRELWATGWMHNRVRMI 336

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFLVK LL+DWR GE +F   L+D D A N   WQW A TG DS  + RI  P  Q  
Sbjct: 337 AASFLVKHLLIDWREGERWFWDTLVDADHAINAVNWQWTAGTGVDSNMFVRIMAPLTQSP 396

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           +FD  G +IR W+PEL++V    IH P            YP P++DH
Sbjct: 397 KFDAAG-YIRRWVPELSDVADADIHDPRI------RPRGYPAPLIDH 436


>gi|163741206|ref|ZP_02148598.1| deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis 2.10]
 gi|161385559|gb|EDQ09936.1| deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis 2.10]
          Length = 479

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 162/481 (33%), Positives = 236/481 (49%), Gaps = 38/481 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+R DLR+ +N AL AA     A VI VFI          + A     +   L  + K
Sbjct: 12  LWWVRRDLRLAENPALDAAVAAG-APVIPVFIFDT---LDEDLGAAPRFRLGLGLAHLAK 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L ++G      +      + E L     +     + + R Y+   + RD  ++K+L+ +
Sbjct: 68  GLERRGARLILRRGP----AQEVLTQLITETGAGAIHWTRAYDPQAIARDTAIKKQLKGQ 123

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVPA---- 181
            I  KSF   +L  P ++      MY+VY+P+ K++    +  L+ A  R +P PA    
Sbjct: 124 GIAAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSR-IPAPAQWPA 182

Query: 182 -IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
              L      + + R  D   Q       +GE  A   L +F   +V  Y + RD PA+ 
Sbjct: 183 SDDLDSWQLAAGMRRGADVVAQYCR----VGEDAAQARLAEFLDTRVADYKQDRDFPAVD 238

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS LS  L+ G +SPR+ W+      ++     KSGA  +L E++WREF  HLM   P 
Sbjct: 239 ATSGLSENLAWGEISPRRMWH----HGLEARRAGKSGAEHFLKEIVWREFAYHLMFHTPH 294

Query: 301 VCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           + + + + P  E   W++ D   + AW++G TG+  +DAAMR+L   G MHNR RMI AS
Sbjct: 295 I-LTRNWRPEWESFRWSEQDDDRVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVAS 353

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K +L  WRIG+++F   L+D D ASN  GWQW A +G D+ P+FRIFNP  Q ++FD
Sbjct: 354 FLTKHMLTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFD 413

Query: 420 PQGTFIRHWLPELNNVPTQ-----YIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           P+G +   W+ E    P Q     Y   P SW L   D   +   P VD K+     L  
Sbjct: 414 PKGRYQSAWIAEGQANPPQTALDFYRATPLSWGLSPQDRRAS---PFVDLKEGRARALEA 470

Query: 474 Y 474
           Y
Sbjct: 471 Y 471


>gi|119389332|pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
           Tokodaii With Two Fad Molecules: Implication Of A Novel
           Light-Harvesting Cofactor
 gi|119389333|pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
           Tokodaii With Two Fad Molecules: Implication Of A Novel
           Light-Harvesting Cofactor
 gi|119389334|pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
           Tokodaii With Two Fad Molecules: Implication Of A Novel
           Light-Harvesting Cofactor
 gi|119389335|pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
           Tokodaii With Two Fad Molecules: Implication Of A Novel
           Light-Harvesting Cofactor
          Length = 440

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 155/470 (32%), Positives = 239/470 (50%), Gaps = 52/470 (11%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASLLQVQKSL 72
            R DLR+ DN  L  A    D +VI VFIA P Q   +   +  +  F+  SLL++   L
Sbjct: 7   FRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDEL 65

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
            +KG      + + F    E + S     +V  ++ N  Y    + RD+ + K  +   I
Sbjct: 66  RKKG-----SRLNVFFGEAEKVVSRFFN-KVDAIYVNEDYTPFSISRDEKIRKVCEENGI 119

Query: 133 -CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
             K+++D  LL P S+ +H     + +T F   +      + ++      +  +  VT S
Sbjct: 120 EFKAYED-YLLTPKSLFHH-----RNFTSFYNEV------SKVKVREPETMEGSFDVTDS 167

Query: 192 NIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           ++   F   F+ I+ P+F  G +  L++L +           +RD PA     +LSP+L 
Sbjct: 168 SMNVDFLLTFKKIESPLFRGGRREGLYLLHRNVD------FRRRDYPAENNNYRLSPHLK 221

Query: 251 IGVLSPRQCW--NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
            G +S R+ +   + KEEFV               EL WR+F+  L+A+Y     G  + 
Sbjct: 222 FGTISMREAYYTQKGKEEFV--------------RELYWRDFF-TLLAYYNPHVFGHCYR 266

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              + I W  +    +AWK+G TG+PIIDA MR LN+ G+++ R+RM+ A FLVK L VD
Sbjct: 267 REYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVD 326

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE YF ++L+D D A NNG WQW ASTG D +  FR+FNP  Q ++FDP+  FI+ W
Sbjct: 327 WRWGERYFATKLVDYDPAINNGNWQWIASTGVDYM--FRVFNPWKQQEKFDPEAKFIKEW 384

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + EL +VP   IH+ +    K  +   YP PIV+  +  ++  ++Y   K
Sbjct: 385 VEELKDVPPSIIHSIY----KTKVP-GYPSPIVNWLERVNYVKSEYKNVK 429


>gi|15921125|ref|NP_376794.1| deoxyribodipyrimidine photolyase [Sulfolobus tokodaii str. 7]
 gi|15621910|dbj|BAB65903.1| 432aa long hypothetical deoxyribodipyrimidine photolyase
           [Sulfolobus tokodaii str. 7]
          Length = 432

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 156/470 (33%), Positives = 239/470 (50%), Gaps = 52/470 (11%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASLLQVQKSL 72
            R DLR+ DN  L  A    D +VI VFIA P Q   +   +  +  F+  SLL++   L
Sbjct: 7   FRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDEL 65

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
            +KG      + + F    E + S     +V  ++ N  Y    + RD+ + K  +   I
Sbjct: 66  RKKG-----SRLNVFFGEAEKVVSRFFN-KVDAIYVNEDYTPFSISRDEKIRKVCEENGI 119

Query: 133 -CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
             K+++D  LL P S+ +H     + +T F   + +  V+          +  +  VT S
Sbjct: 120 EFKAYED-YLLTPKSLFHH-----RNFTSFYNEVSKVKVREP------ETMEGSFDVTDS 167

Query: 192 NIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
           ++   F   F+ I+ P+F  G +  L++L +           +RD PA     +LSP+L 
Sbjct: 168 SMNVDFLLTFKKIESPLFRGGRREGLYLLHRNVD------FRRRDYPAENNNYRLSPHLK 221

Query: 251 IGVLSPRQCW--NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
            G +S R+ +   + KEEFV               EL WR+F+  L+A+Y     G  + 
Sbjct: 222 FGTISMREAYYTQKGKEEFV--------------RELYWRDFF-TLLAYYNPHVFGHCYR 266

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              + I W  +    +AWK+G TG+PIIDA MR LN+ G+++ R+RM+ A FLVK L VD
Sbjct: 267 REYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVD 326

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE YF ++L+D D A NNG WQW ASTG D +  FR+FNP  Q ++FDP+  FI+ W
Sbjct: 327 WRWGERYFATKLVDYDPAINNGNWQWIASTGVDYM--FRVFNPWKQQEKFDPEAKFIKEW 384

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + EL +VP   IH+ +    K  +   YP PIV+  +  ++  ++Y   K
Sbjct: 385 VEELKDVPPSIIHSIY----KTKVP-GYPSPIVNWLERVNYVKSEYKNVK 429


>gi|182439675|ref|YP_001827394.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468191|dbj|BAG22711.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 455

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 144/470 (30%), Positives = 227/470 (48%), Gaps = 36/470 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V   +DLR+ DN  L AA  ++D +V+ +F+      R    +  +  F+   L 
Sbjct: 1   MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLA 59

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDS--YCLQQRVTKLFYNRQYEINEVRRDK 121
            +   L  +G   IV +    +      E   +    +   V++    R+  I E   D 
Sbjct: 60  ALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALADT 119

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADL---RSL 177
             E  +   V+         L PG ++       + V+TP+ +      V+  L   R++
Sbjct: 120 GRELHVHDAVVTA-------LAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLTAPRTV 172

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDI 236
            VP    + P+   +         + + P     GE+    ++  +    +  Y +  D 
Sbjct: 173 RVPDGVASDPLPDRD-------SVENLSPGLARGGEEAGRKLVTSWLNGPMADYEDGHDD 225

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            A   TS+LSP+L  G +S  +  +R +E       K   G  +++ +L WR+F+  ++A
Sbjct: 226 LAGDATSRLSPHLHFGTVSAAELVHRARE-------KGGLGGEAFVRQLAWRDFHHQVLA 278

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P       + P  ++  W  D+  + AWK G TG+P++DAAMRQL   GWMHNR RM+
Sbjct: 279 DRPDASWSD-YRPRHDR--WRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARML 335

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGK
Sbjct: 336 AASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPN-RVLNPVIQGK 394

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           RFD +G ++R W+PEL  V    IH P      +  +L+YP P+VD  +A
Sbjct: 395 RFDARGDYVRRWVPELAEVEGSAIHEPWKLQGLDRAALDYPDPVVDLAEA 444


>gi|294011743|ref|YP_003545203.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S]
 gi|292675073|dbj|BAI96591.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S]
          Length = 500

 Score =  216 bits (549), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 232/484 (47%), Gaps = 56/484 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67
           L+W R DLR+ D  AL AA    +  VI +++     P QW+  G S     +++ SL  
Sbjct: 38  LLWFRQDLRLADQAALGAAVQ--EGPVIPLYVLDDQAPRQWKMGGAS---RWWLHHSLRS 92

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L +KG      Q  N  D I  +      +RV  L +   YE      +K L KRL
Sbjct: 93  LDDDLRKKGSRLVLRQ-GNCVDQIVQIAEETGARRVHALHH---YEPWWRNAEKALGKRL 148

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +C   D ++LLPPG++       Y++YTPF +A++ ++  A+    P    R+   
Sbjct: 149 D---LCL-HDGALLLPPGAVRTGGGNSYRIYTPFARAVMDHMPPAEPVRAPS---RID-- 199

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-----------GEQNALHILRKFCKEKVYYYVEQRDI 236
             P   P+        + P  P            GE  A   +  F  E   Y    R++
Sbjct: 200 -APGQWPKGDSLDRWGLLPTAPDWAAAFSRDWTPGEAGARANVAAFLDEAADYD-RARNL 257

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL-- 294
           P+ +G+S+LSP+L  G +SP Q W ++              A ++L ELIWR+ Y H   
Sbjct: 258 PSREGSSRLSPHLHFGEVSPAQVWRQVA--------GAPGNATTFLKELIWRD-YAHTQI 308

Query: 295 --MAFYPSVCMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             M  Y S      F  +PW +  E   D     AWK G TG+PI+DA MRQL T GWMH
Sbjct: 309 WAMPAYGSENARPAFDAMPWRDLREAGVD---FTAWKTGRTGYPIVDAGMRQLWTTGWMH 365

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RMI ASFL+K LL+DWR G  +F   L+D   A+N+  WQW A +G D+  + RI  
Sbjct: 366 NRVRMIAASFLIKHLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMA 425

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  Q ++F+    +IR W+PEL ++    IH P +    +    +YP   +DH++     
Sbjct: 426 PLTQSEKFE-AADYIRKWVPELAHLNDDVIHDPEA---HDARPADYPAKCIDHREGRERA 481

Query: 471 LNQY 474
           L  +
Sbjct: 482 LAAW 485


>gi|326780339|ref|ZP_08239604.1| Deoxyribodipyrimidine photo-lyase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660672|gb|EGE45518.1| Deoxyribodipyrimidine photo-lyase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 455

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 144/470 (30%), Positives = 227/470 (48%), Gaps = 36/470 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V   +DLR+ DN  L AA  ++D +V+ +F+      R    +  +  F+   L 
Sbjct: 1   MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLA 59

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDS--YCLQQRVTKLFYNRQYEINEVRRDK 121
            +   L  +G   IV +    +      E   +    +   V++    R+  I E   D 
Sbjct: 60  ALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALADT 119

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADL---RSL 177
             E  +   V+         L PG ++       + V+TP+ +      V+  L   R++
Sbjct: 120 GRELHVHDAVVTA-------LAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLTAPRTV 172

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDI 236
            VP    + P+   +         + + P     GE+    ++  +    +  Y +  D 
Sbjct: 173 RVPDGVASDPLPDRD-------SVKNLSPGLARGGEEAGRKLVTSWLNGPMADYEDGHDD 225

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            A   TS+LSP+L  G +S  +  +R +E       K   G  +++ +L WR+F+  ++A
Sbjct: 226 LAGDATSRLSPHLHFGTVSAAELVHRARE-------KGGLGGEAFVRQLAWRDFHHQVLA 278

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P       + P  ++  W  D+  + AWK G TG+P++DAAMRQL   GWMHNR RM+
Sbjct: 279 DRPDASWSD-YRPRHDR--WRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARML 335

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGK
Sbjct: 336 AASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPN-RVLNPVIQGK 394

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           RFD +G ++R W+PEL  V    IH P      +  +L+YP P+VD  +A
Sbjct: 395 RFDARGDYVRRWVPELAEVEGSAIHEPWKLQGLDRAALDYPDPVVDLAEA 444


>gi|254438207|ref|ZP_05051701.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
           307]
 gi|198253653|gb|EDY77967.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
           307]
          Length = 533

 Score =  216 bits (549), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 158/484 (32%), Positives = 224/484 (46%), Gaps = 44/484 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFIYASLL 66
           + W+R D RI DN AL AAC      VI VFI   E    HG + +    +   ++ + L
Sbjct: 69  IYWVRRDFRIGDNAALSAACATGR-PVIPVFICD-EVVESHGAAPKFRLGEGVRVFGAAL 126

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            V  S     +V +        D++  L     Q   T +++NR Y+     RD  ++  
Sbjct: 127 AVVGSR----LVLRR------GDALAVLREVVAQTGATGVYWNRLYDPASKARDTGVKAA 176

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   V   SF   +L  P ++       Y+V+TP  K +    V      +P PA    
Sbjct: 177 LKADGVEVASFTGHLLFEPWTVETKTGGFYRVFTPLWKTVRGRDVAT---PIPAPASVPA 233

Query: 186 GPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             V P++  R  D+   A        +     +GE  A   L  F + +V  Y   RD+P
Sbjct: 234 PDVWPTS-DRLDDWALGAAMVRGRDVLAAHICVGEAAARTRLETFIEGRVQSYQTNRDLP 292

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            + GTS+LS  L+ G +SP  CW+         +   K  A  +  EL+WREF  HL+  
Sbjct: 293 GVDGTSRLSENLTYGEISPAVCWH----AGWAAIHSGKGQAEIFCKELVWREFAYHLVHH 348

Query: 298 YPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            P +        W +   WN +D+  + AWKQG TG   +DAAMR++   G MHNR RMI
Sbjct: 349 TPHIVDRNWKEGW-DSFPWNTEDTAEVIAWKQGRTGIAFVDAAMREMYVSGTMHNRGRMI 407

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS+L K L+  W++G+ +F   L D D ASN  GWQWAA +G D+ PYFR+FNP  Q  
Sbjct: 408 VASYLTKHLMTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLD 467

Query: 417 RFDPQGTFIRHWLPELN----NVPTQYIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHHT 470
           +FD  G + R W+ E      +    Y  A P +W L   D    YP P+VD        
Sbjct: 468 KFDRAGLYARTWIAEGQGDAPDTALSYFDAIPKNWGLAATD---QYPAPVVDMATGRQRA 524

Query: 471 LNQY 474
           L  Y
Sbjct: 525 LEAY 528


>gi|330835507|ref|YP_004410235.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
           Ar-4]
 gi|329567646|gb|AEB95751.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
           Ar-4]
          Length = 433

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 152/475 (32%), Positives = 240/475 (50%), Gaps = 47/475 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQ 67
           + L   R DLR+ DN  L  A    D +V+ +FI  P Q   +   S     F+  SLL+
Sbjct: 2   ICLFLFRRDLRLEDNTCLIKALRECD-EVVPLFIIDPRQVEDNPYKSPFAIGFMIDSLLE 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L   G   + H    F + I        +     ++ N  Y     +RD+ +++++
Sbjct: 61  LDQDLKTMGS--RLHLLKGFPEEI------IPKINADAVYMNEDYTPFSRQRDERIKEKV 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + +++     + +LL          + Y V+T F      ++    +R   V  ++  G 
Sbjct: 113 KGKLVTC---EDLLLTKKRFFLKEGKPYSVFTRF----YVDVKDKPVRRPEVNNLKNYGE 165

Query: 188 VTP-SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           +   +++    +  FQ     F  G + AL  L +   + + Y +  R+ P + GT++LS
Sbjct: 166 MKDITDVKLLENLHFQR--SSFKGGRRAALDTLNR--AQTIDYSL--RNFPGLPGTTRLS 219

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  GVLSPR+ +  + EE                 +L WR+F+  L+A+Y     G  
Sbjct: 220 PYLKFGVLSPREVYYSVNEEI--------------RRQLYWRDFF-TLLAYYNPYVFGHA 264

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           +    + + W  D++L  AW QG TG+PI+DA MR+LN  G+MHNR RMITA FLVK L 
Sbjct: 265 YKREYDCVPWVNDTNLFSAWTQGKTGYPIVDAGMRELNNTGFMHNRTRMITAFFLVKVLH 324

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDWR GE+YF ++L+D D + NNG WQW ASTG D +  FRIFNP +Q K+FDP+  +I+
Sbjct: 325 VDWRWGEKYFATKLVDYDPSVNNGNWQWVASTGVDRM--FRIFNPWLQQKKFDPEAVYIK 382

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            W+PEL ++    IH  ++   K D    YP PIV++ +       +YY   + +
Sbjct: 383 EWVPELRDLSPADIHNVYAL--KVD---GYPKPIVNYLEEVRKA-REYYEKSRST 431


>gi|297565815|ref|YP_003684787.1| Deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946]
 gi|296850264|gb|ADH63279.1| Deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946]
          Length = 435

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 217/442 (49%), Gaps = 41/442 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVW R DLR  D+ ALY A  +    ++ +    P        S R+  + YA+   +
Sbjct: 1   MNLVWHRADLRTHDHPALYQAAQSG--PLVGLVNLDPHILEP--TSPRRRAWFYANTQAL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++ +++G          +    E L     +  V ++F    Y    + RD   E+ + 
Sbjct: 57  REAYARRGGTL----LVRYGTPWEVLPQVVAELGVQRVFAIASYTPYGLHRDHKTEQAIP 112

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRK---ALIQNLVQADLRSLPVPAIRL 184
            R+  C+    + + PPG +L      Y VYTP+ K      + L +  L     PA+  
Sbjct: 113 GRIHWCEG---NHVQPPGRLLKPDGTPYTVYTPYAKRWWGEAERLGEGLLPPGRFPALER 169

Query: 185 TG------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   P  PS++P            + P GE+ AL  L  F ++++  Y + RD   
Sbjct: 170 PDLELGQVPQEPSDVP------------LPPPGEEAALQALEAFLRDRLPTYHQTRDRLD 217

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            QG S+LSPY ++GVLSPR   +R        L     GA  W+ EL WR+F   L+   
Sbjct: 218 GQGGSRLSPYFTLGVLSPRLAVHRA-------LHIGGEGARKWVAELAWRDFSADLLYHR 270

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P + + + F P  + + W  D  L +AWK G TG  ++DAAMR+LN  G+M NR RM  A
Sbjct: 271 PQM-LHQSFDPRWDGLPWVDDPELFEAWKAGETGIALVDAAMRELNATGFMSNRARMAVA 329

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            F VK  L+ W+  E++F ++LLDGD ASN  GWQWA   G D+ PYFR+FN   Q  + 
Sbjct: 330 QFAVKLALLPWQKAEQHFKNRLLDGDTASNLQGWQWAGGLGVDAAPYFRVFNLERQVAQH 389

Query: 419 DPQGTFIRHWLPELNNVPTQYI 440
           DP+G +++ WLPE    P Q +
Sbjct: 390 DPEGVWLKRWLPEWGGPPVQPV 411


>gi|50306241|ref|XP_453092.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642226|emb|CAH00188.1| KLLA0D00462p [Kluyveromyces lactis]
          Length = 595

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 151/503 (30%), Positives = 236/503 (46%), Gaps = 77/503 (15%)

Query: 13  WLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           W R DLR+ DN  L YA   +    V A+++     W  H  S  +  F   +L  + + 
Sbjct: 75  WFRGDLRVRDNTGLAYALNQSKSGSVEALYVINEHDWIAHMESGWKLKFQLDALRSLSRE 134

Query: 72  LSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTKLFY---------------- 108
           L++ G+              SN  +  +W  S+ +++      Y                
Sbjct: 135 LAKLGVRLHVKYFIPESPCLSNSREYAQWF-SHIIEEIAASKNYDGNSKDDTKDDTDADE 193

Query: 109 -------------------------NRQYEINEVRRDKLLEKRLQHR------VICKSFD 137
                                    N QYE++E+ RD L   RLQ +         K F 
Sbjct: 194 PALKKRKKDNDENQKGGSPNILVTANLQYEVDELYRD-LKICRLQTQSSNSANFTLKLFH 252

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-------VTP 190
           D  ++ PG +       Y ++TP+ K  + + ++A+ +      I  + P       V P
Sbjct: 253 DMCIIEPGILKTGKGSQYTIFTPWYKKWV-SFLEANQKDKHTICIEASIPQSSNREKVNP 311

Query: 191 SNI----PRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             I    P  F  + P Q ++ +    E+ AL  L +F  ++   Y   +D+  + GTS 
Sbjct: 312 EEIKYQLPDKFMSEMPEQTLN-IPKADEETALKKLTEFISKRASKYNNDKDLLDLTGTSL 370

Query: 245 LSPYLSIGVLSPR----QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LS Y++ GV+S R    Q +       ++  IK  +   +++ E+ WR+FY+H ++++P 
Sbjct: 371 LSCYVTSGVISARTILNQSYQANNSRLMNKDIKKNNSLETFIKEVAWRDFYKHAISYWPF 430

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           + M  PF   T  I+W  D  L + W  G TG PI+DA M ++   G+++NR RMITASF
Sbjct: 431 LSMDLPFKFETLNIKWENDVFLFEKWCYGETGIPIVDAIMLKMLKTGYINNRSRMITASF 490

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR GE +F   L+D D ASN GGW + ASTG D  PYFR+FN  +Q +++DP
Sbjct: 491 LAKNLLIDWRWGERWFRKHLIDYDTASNVGGWGFCASTGIDCQPYFRVFNMKLQSEKYDP 550

Query: 421 QGTFIRHWLPELNNVPTQYIHAP 443
           +G FIRHWL    N  +  +H P
Sbjct: 551 EGKFIRHWLENDEN-DSDNVHEP 572


>gi|323358558|ref|YP_004224954.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037]
 gi|323274929|dbj|BAJ75074.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037]
          Length = 456

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 150/486 (30%), Positives = 233/486 (47%), Gaps = 58/486 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R+DLR+TDN AL AA  + +  ++A+++   E      I      +++ SL  
Sbjct: 3   SPSVVWFRDDLRLTDNPALRAAL-DREEPIVALYLLDEESDGVRSIGGAARWWLHGSLAS 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L ++G      +    +       +   +     +F+NR+Y   E   D  ++++L
Sbjct: 62  LGERLEERGGRLVLRRGRAAEVVP----AVVEEVGAGAVFWNRRYGGVEREIDAGIKEKL 117

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--- 183
           +   V   SF  ++L  P ++   A + Y VY+PF +A +Q L        P+P  R   
Sbjct: 118 RGDGVTVASFAANLLYEPWTVRTQADKPYGVYSPFARA-VQKLPAP---RPPMPEARKVP 173

Query: 184 -LTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
              G V   ++  +   P +      +   +  GE      L++F  + +  Y + RD  
Sbjct: 174 GFDGHVDGDDLAAWDLLPTKPDWAGGLRETWEPGEPAGKARLKEFLDDDLGDYSKYRDEF 233

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-----AFSWLNELIWREFYR 292
           A   TS LSP L  G LSP + W+       + +    SG     A  +L+EL+WREF  
Sbjct: 234 AGGATSNLSPRLRWGELSPYEVWH-------ETIAHRGSGEHAQSASGFLSELVWREFAW 286

Query: 293 HLMAFYPSVCMGKPFIPWTEKIE---WNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           H+    P +      + W    +   W + +   L+ W+QG TG  ++DA MRQL   G 
Sbjct: 287 HVTYHSPDIAT----VNWRRNFDAFPWPRLNRAHLETWQQGKTGVAVVDAGMRQLWHTGV 342

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RM+TASFL+K+LL+DWR GE++F   L+D D ASN   WQW A +G D+ PYFR+
Sbjct: 343 MHNRVRMVTASFLIKNLLIDWRHGEQWFWDCLVDADAASNPFNWQWVAGSGADAAPYFRV 402

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           FNP  Q K+FDP   ++R W PE                    L  N P P+VD  +   
Sbjct: 403 FNPDTQRKKFDPHDAYVREWAPEY-------------------LGENPPEPMVDLGETRK 443

Query: 469 HTLNQY 474
             L+ Y
Sbjct: 444 RALDAY 449


>gi|118364198|ref|XP_001015321.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
           thermophila]
 gi|89297088|gb|EAR95076.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
           thermophila SB210]
          Length = 472

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 142/432 (32%), Positives = 218/432 (50%), Gaps = 37/432 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67
           V+L W R DLR+ DN  LY A   S   V+ +FI   +   +       +  FI+  L Q
Sbjct: 18  VNLFWFRRDLRLFDNVGLYHALKES-IPVVPLFIFDKDILNELEDKKDCRVEFIHNYLSQ 76

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +Q +L + G   +V   +  S F   +E  D  C+       F NR YE    +RD+ ++
Sbjct: 77  MQDNLRKHGSTMVVKHSNAESAFKSLMEEFDISCV-------FTNRDYEPYAKKRDQQIK 129

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L  + I  K F D V+     +       +KVYTPF K  I  L + D +S    ++ 
Sbjct: 130 EILNSKGIGFKDFKDQVIFEAKEVHQDDGSAFKVYTPFSKKWISLLSEPDYQSYKSESLM 189

Query: 184 LTGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                +   +P        FQ     FP  + +         +E V  Y + RD P I+ 
Sbjct: 190 NNYWKSQVEVPFPTLEQIGFQKTGIEFPPSQLD---------EELVKNYDKTRDYPHIK- 239

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS +S +L  G +S R+   +       +L+  K     +L+EL WREF+  ++  +P +
Sbjct: 240 TSLMSVHLRFGTVSIRELVRKA------VLLNQK-----YLDELCWREFFMMMIDQFP-L 287

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              + F     K+EW  +    +AW +G TG+P++DA MRQLN  G++ N+LRMI ASFL
Sbjct: 288 FATENFKKAYNKVEWRNNPEEFKAWCEGKTGYPLLDAGMRQLNKTGYLPNKLRMIAASFL 347

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+DWR GE YF  +L+D DLA+N GGWQW   +G D  PY R+ +P +Q K++DP 
Sbjct: 348 TKNLLIDWRWGERYFAQKLIDYDLAANVGGWQWVNGSGTDQAPYIRVLDPVMQQKKYDPD 407

Query: 422 GTFIRHWLPELN 433
             +++ W+ + N
Sbjct: 408 FKYVKTWVEDFN 419


>gi|332520706|ref|ZP_08397168.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix algicola 5H-3-7-4]
 gi|332044059|gb|EGI80254.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix algicola 5H-3-7-4]
          Length = 434

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 222/475 (46%), Gaps = 47/475 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + +V++ W R DLR+ DN   + A   ++  V+ +FI   E   +   +  +  FI+ +L
Sbjct: 2   SKTVNIFWFRRDLRLDDNVGFFEALK-AEHPVLPIFIFDSEILDELPENDARVSFIFETL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++++L  +           +   I+   S      +  ++ N  YE     RD  ++ 
Sbjct: 61  QNMRQTLQDEN---NSSLAMFYGKPIDIYKSLIKDYNINTVYTNHDYEPYAKERDSEIQS 117

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+ +++  K++ D V+     ++    + Y VYTP+ K         DL+        L
Sbjct: 118 FLEENKINFKTYKDQVIFEKNEVVKDDGKPYVVYTPYMKKWKAKFKDYDLKIYYTNTF-L 176

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGT 242
              +  + +P            +  IG + +   ++ +      +  Y   R+ PA   T
Sbjct: 177 NNLIENTRLPNL---------SLSDIGFKKSSQDIKDYTVTPTLIQEYEATRNFPAKDTT 227

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+L P+L  G +S R+   +   E  ++          W  ELIWREF+  ++  +P   
Sbjct: 228 SRLGPHLRFGTVSVRKMVKKATAENNEIF---------W-QELIWREFFMQILWHFPD-T 276

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               F    + I+W  ++   +AW  G TG+P++DA MRQLN  G+MHNR+RM+  SFL 
Sbjct: 277 HKDAFKAKYDNIKWRNNNKEFKAWCDGKTGYPLVDAGMRQLNQTGFMHNRVRMLVGSFLC 336

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE YF  +L D D+ASN G WQW A +G D+ PYFRIFNPT Q  +FD   
Sbjct: 337 KHLLIDWRKGEAYFAQKLHDYDMASNVGNWQWVAGSGVDASPYFRIFNPTTQIDKFDKDK 396

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +I+ W+PE                DK      YP  IVDHK+A    L  Y  A
Sbjct: 397 KYIKQWIPEFGT-------------DK------YPEKIVDHKEARERCLKVYKDA 432


>gi|254776317|ref|ZP_05217833.1| Phr protein [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 442

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 150/474 (31%), Positives = 227/474 (47%), Gaps = 48/474 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ D+ AL AA  +SD +V+A F+  P   R  G   R+  F+  SL  ++ 
Sbjct: 4   LLWFRRDLRLHDHPALSAAA-DSD-EVLACFVLDPRLQRSSG--PRRLQFLGDSLRVLRD 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  + +V +        +  + + +       + +  +  +     RRD  +   L   
Sbjct: 60  ELDGRLLVTRGRPDIRIPEIAKAIGA-------SSVHVSEDFTPFGKRRDARVRAALAS- 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--- 187
           V   +     L+ PG +       Y+V+TPF +       +   ++    A R   P   
Sbjct: 112 VPLVATGSPYLVAPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPAKTGAASA-RWLDPARL 170

Query: 188 -VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +T   IP     P   +D     GE  A +  + F    +  Y + R  P I+GTS++S
Sbjct: 171 GITACEIPD----PGATLD--LAAGEAAARNQWKTFVDNGLANYADDRHRPDIEGTSRMS 224

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            ++  G + PR           DL ++  +GA ++L EL +R+FY  ++   P+      
Sbjct: 225 AHVKFGTIHPRTL-------VADLDLR-AAGARTYLRELAFRDFYADVLHHRPASA---- 272

Query: 307 FIPWTEKIE------WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  W    +       ++     +AWK G TGFP +DA MRQL   G+MHNR+RM  ASF
Sbjct: 273 WRNWNSAFDAIRTDTGDEAGRRFEAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASF 332

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDL + W+ G  +F+ QL+DGDLA+N  GWQW A  G D+ PYFR+FNP  QG++FDP
Sbjct: 333 LVKDLHLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDP 392

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL     +    PH  L   +    Y  PIVDH       L +Y
Sbjct: 393 SGDYIRRWVPEL-----RCADDPH--LRTGERPPGYLAPIVDHATERAEALRRY 439


>gi|189184449|ref|YP_001938234.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181220|dbj|BAG41000.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
           tsutsugamushi str. Ikeda]
          Length = 505

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 153/511 (29%), Positives = 243/511 (47%), Gaps = 62/511 (12%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSHFIYASLL 66
           + +VWLR +LR+ DNK  +A    S  K+I +FI   T  Q   + +  R S F+  ++ 
Sbjct: 6   ISIVWLRRNLRLEDNKP-FAEALKSSKKIIPIFIFDTTILQNFSNPLDRRLS-FLANTIY 63

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L +     + +    + +S+E +     +  +  ++ + +Y+   V RD+ +   
Sbjct: 64  NLNSELQE----LEGNLLVLYGNSVEIIPKLIEKLNIQTIYADEEYDPENVIRDQKITNL 119

Query: 127 LQH------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------------- 167
           L+        ++C    D +LL PGSI+ H  Q Y  Y P+  A  Q             
Sbjct: 120 LEFNGKSKLELVC----DHLLLKPGSIVTHKKQYYMRYNPYNTAFKQYLRKNCSCIERSN 175

Query: 168 --------NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
                   +L   DL SL +  I L      S I     Y +Q  +   PI  +N   IL
Sbjct: 176 YRLDHRLVSLESIDLSSLNLKIINLNHGA--SEILNQIGYTYQKDNIWQPIKAKN---IL 230

Query: 220 RKFCKEKVYYYVEQ---RDIPAIQGTSQLSPYLSIGVLSPRQCWNRL-----KEEFVDLL 271
             F +  +  Y      +++  +  +S +SPYL  G++S R+C+++      K    D  
Sbjct: 231 NNFIQNNITSYRTNNTNQNLLYLNNSSTISPYLRFGLVSIRECFSKAIAADSKALITDEA 290

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
           I        W++ LI REFY  L+  +P+    +    +   I W KD  +   + +G T
Sbjct: 291 IGKTEKEKGWIDGLIHREFYASLLFRFPNTVSEEFQDKYRNNIPWEKDLEIYCKFTEGKT 350

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G+P+IDA+++QL   GWMHN  R I A+F  K LL+DWR+GE +F   L+D +LASN G 
Sbjct: 351 GYPMIDASIKQLLRDGWMHNLARTIVANFFTKYLLLDWRLGEHFFSQYLMDYELASNVGS 410

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           WQWAAS G D   + R+F P  QG++FD +  +I+ +LP L NV  + IH  H       
Sbjct: 411 WQWAASCGTDMEHFVRMFCPFAQGRKFDHEAKYIKKYLPNLENVSAKVIHDVH------- 463

Query: 452 LSLNYP---LPIVDHKKACHHTLNQYYAAKK 479
            S  YP    PI+D++ +   + N +   KK
Sbjct: 464 FSKKYPNYLTPIIDYQLSKDKSSNFFKQIKK 494


>gi|25027203|ref|NP_737257.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
 gi|23492484|dbj|BAC17457.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
          Length = 492

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 168/512 (32%), Positives = 231/512 (45%), Gaps = 70/512 (13%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  +TA S  +VW R+DLRI DN AL  A       VI +FI   +Q R  G +AR   +
Sbjct: 17  MSLSTA-SPTIVWFRDDLRIRDNAALAWAADR--GPVIGLFI-DEDQPRALGGAARW--W 70

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              SL  +  +L+  G+           D +  L     +     + +NR+Y      RD
Sbjct: 71  RDRSLTLLVDALATHGVPLLRRSG----DPVVLLTEVVRETGAAAVTWNRRYHGPLRERD 126

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLP 178
             ++ +L+ + +   S    +L  P  + + A   YKVYTPF KA      ++  R   P
Sbjct: 127 AEIKTQLREQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDP 186

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKE--KVY 228
           +PA +LTGP TP       D P    DP +          GEQ AL  L  F     +  
Sbjct: 187 MPA-QLTGPDTPVADTGGIDAP----DPFWAAEMATHCRPGEQAALDRLGDFLDRMRERG 241

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y + RD  A   TS LSP+L  G +S  + W  +        I        +  EL+WR
Sbjct: 242 GYADGRDEMARAVTSGLSPHLRFGEISVHRVWEEITAAADAGDIDATDAQV-FRKELLWR 300

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH----------------------LLQAW 326
           +F  H +   P +        +  +  W  D H                       L AW
Sbjct: 301 DFAWHRLYALPDMATTNVREQFN-RFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAW 359

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           + G TG P++DA MR+L   G MHNR RM+ ASFL K+L + WR GEE+F   L+D D A
Sbjct: 360 RAGRTGIPLVDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPA 419

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SN   WQWAA +G+D+ PYFRIFNP  Q ++FDP  T+IR W+PE               
Sbjct: 420 SNAFNWQWAAGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPEYG------------- 466

Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
                 +  YP PIVD K++    L+ Y A K
Sbjct: 467 ------TPEYPAPIVDLKESRREALDAYEAVK 492


>gi|126726813|ref|ZP_01742652.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2150]
 gi|126703771|gb|EBA02865.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2150]
          Length = 476

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 146/487 (29%), Positives = 236/487 (48%), Gaps = 42/487 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V L  +LR++D++ L AA   S   VI VFIA    +        +     A+  +  +
Sbjct: 16  IVRLGRNLRLSDHQPLLAA-QQSGRPVIPVFIADDAFFALGAAPKWRFGLGLAAFSEQLE 74

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            +  K ++ +    S   D I        + +   + + R Y+ + + RD  ++  L + 
Sbjct: 75  KIGSKLLLRRGDVQSVLLDLIH-------ETQACAVLWERSYDPSSINRDTAIKMALGEE 127

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            ++ +SF  ++L+ P  I       YKV+TPF + L Q ++         PA  ++  V+
Sbjct: 128 GIVAQSFSGALLIEPWEIATKTGGFYKVFTPFWRNLHQMIIAP-------PASTVSNLVS 180

Query: 190 PSNIPRFFDYP-----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P++ P+  D                +     +GE+ A+    KF  +    Y ++RD PA
Sbjct: 181 PTDWPKGEDIKDWQLGQGMMRGLDVVGDHICVGEKAAVDRCEKFLSDNCNEYNDKRDFPA 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           I  TS+LS  L+ G +SPR  W+  ++     D+ + P      ++ +L WR+F  HL  
Sbjct: 241 IDATSKLSENLAYGEISPRLIWHLAQKVAHIDDVNVVP------FIRQLAWRDFAWHLTY 294

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P +        W +   W      + AW++G TG  ++DAAMR+L   G MHNR RMI
Sbjct: 295 HTPHILDANWKAGW-DTFPWITKGPEVLAWQRGQTGIELVDAAMRELYVTGRMHNRARMI 353

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS+L K L+VDWR+G+E+F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q +
Sbjct: 354 AASYLTKHLMVDWRVGQEWFGDTLVDMDLAANAMGWQWVAGTGPDASPYFRVFNPDGQAE 413

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH-APHSWLDKNDLSLNY-PLPIVDHKKACHHTLNQY 474
           +FD +  +   WL  + +   Q+   AP SW    ++ LN+ P P++         L  Y
Sbjct: 414 KFDKERKYRDFWLNPVQDGARQFAKAAPKSW----NIDLNHRPKPLISLADGRARALTAY 469

Query: 475 YAAKKQS 481
            + KK  
Sbjct: 470 SSLKKSG 476


>gi|319442565|ref|ZP_07991721.1| deoxyribodipyrimidine photolyase [Corynebacterium variabile DSM
           44702]
          Length = 492

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 167/516 (32%), Positives = 241/516 (46%), Gaps = 72/516 (13%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQ 57
           M   +AM+  LVW R+DLR+ DN AL  A      +VIAV I   A     R  G +A  
Sbjct: 1   MTDRSAMT--LVWFRDDLRLADNAALEWAAQGG--EVIAVVIDEDAAATGVRPRGAAA-- 54

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           S +   SL Q+   L + G+   +       D ++ + +      V  + +NR+YE    
Sbjct: 55  SWWRERSLSQLAGRLLEHGVPMLHLAG----DPVDIMTALPGLLAVDAVVWNRRYEEPLR 110

Query: 118 RRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------IQNL 169
             D  +++ LQ       SF   +L  P  +     + Y+V+TP+ +A        +  L
Sbjct: 111 FVDSRIKETLQAGGTEVHSFPGHLLTEPWQVTTGEGRPYRVFTPYSRAATPVAEDAVAQL 170

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---------FPIGEQNALHIL- 219
           V+A  +   VPA  L GP    ++P     P + +DP          +  GE+     L 
Sbjct: 171 VEAAAQ---VPA-DLRGPE--KDLPEVPFPPVRPVDPAPWAASLADHWTPGEEAGQATLA 224

Query: 220 ------RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
                 R+        Y + RDIP    T+ LSP+L  G +SP + W  +    VD    
Sbjct: 225 AFVTGDRRTTATGSPGYADGRDIPDADATTGLSPHLRFGEVSPHRVWYAVARA-VDAGDV 283

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYP---SVCMGKPFI--PWTEKIEWNKD-SHL----- 322
           P +   +  +EL+WR+F    +   P   S C+ + F   PW        D  HL     
Sbjct: 284 PAADGSALHSELLWRDFAWQRLYHRPDLASRCVREQFTQFPWRWDNSLPGDVKHLGDATA 343

Query: 323 ----LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
               L AW+ G TG P++DA MR+L T GWMHNR+RM+  SFL K+LL DWR GE++F  
Sbjct: 344 LAQDLSAWRSGTTGIPLVDAGMRELWTTGWMHNRVRMVVGSFLTKNLLADWRHGEQWFWD 403

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            L+D D ASN   WQW A  G+D+ PYFRIFNP  Q K+FDP+  ++  W+PE   V  +
Sbjct: 404 TLVDADPASNPFNWQWVAGCGDDASPYFRIFNPETQRKKFDPELGYVNRWVPEF--VGPE 461

Query: 439 YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
             HA             YP P+VD +++    L  Y
Sbjct: 462 AAHA-----------GPYPPPMVDLRESRQRALAAY 486


>gi|309811658|ref|ZP_07705437.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
           Ellin185]
 gi|308434459|gb|EFP58312.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
           Ellin185]
          Length = 463

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 150/467 (32%), Positives = 219/467 (46%), Gaps = 67/467 (14%)

Query: 11  LVWLRNDLRITDNKALYAAC---------HNSD-------AKVIAVFIATPEQWRQHGIS 54
           LVW R+DLR  D+ AL AA            SD       A V+A+F+   E      + 
Sbjct: 4   LVWFRDDLRTFDHPALRAAVDHAVTSQGSQESDDGASSEPAGVVALFVLDEESDGLRPLG 63

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
                +++ SL+ ++  L   GI     + +  D  ++ ++++     V  + +NR+Y  
Sbjct: 64  GAVKWWLHHSLVALRAKLEALGIPLVLRRGAAHDVVLDVVETF----DVDFVGWNRRYGG 119

Query: 115 NEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
            E   D  ++     R V   S+  ++L  P +I       Y+V+TPF KA +       
Sbjct: 120 PERVVDAGIKAAFAERDVEVHSYAANLLFEPWTITTGGGTPYRVFTPFWKACL------- 172

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID--------PMFPI-----------GEQN 214
             S P P   L  P   +      +   QA D        P  P            GE  
Sbjct: 173 --SEPQPREPLDAPSALTPPSALVEQAGQASDDLDTWALLPTKPDWSTGIAKAWTPGEDA 230

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           A  +L  F  + V +Y  QRD P+   TS+LSP+L  G +SP+  W+  +    D+    
Sbjct: 231 AHELLADFLDDAVVHYATQRDEPSKPATSRLSPHLRFGEISPQTIWHAARRSGKDVE--- 287

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPS---VCMGKPF--IPWTEKIEWNKDSHLLQAWKQG 329
                ++L+E+ WREF  H +   P    V + + F   PW        D   L AW++G
Sbjct: 288 -----TFLSEVGWREFAWHTLYDNPDLHEVNLNRKFDAFPWPPL-----DEDALLAWEKG 337

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG P++DA MR+L   G MHNR+RM+ ASFL K+LL+DWRIGEE+F   L+D D ASN 
Sbjct: 338 ETGVPLVDAGMRELWETGTMHNRVRMVVASFLTKNLLIDWRIGEEWFWDTLVDADAASNP 397

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436
             WQW A  G D+ PYFR+FNP  Q K+FDP   ++R W  +    P
Sbjct: 398 FNWQWVAGCGADAAPYFRVFNPETQRKKFDPDERYVRRWGADDGREP 444


>gi|259506660|ref|ZP_05749562.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
 gi|259165744|gb|EEW50298.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
          Length = 476

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 168/512 (32%), Positives = 231/512 (45%), Gaps = 70/512 (13%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  +TA S  +VW R+DLRI DN AL  A       VI +FI   +Q R  G +AR   +
Sbjct: 1   MSLSTA-SPTIVWFRDDLRIRDNAALAWAADR--GPVIGLFI-DEDQPRALGGAARW--W 54

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              SL  +  +L+  G+           D +  L     +     + +NR+Y      RD
Sbjct: 55  RDRSLTLLVDALATHGVPLLRRSG----DPVVLLTEVVRETGAAAVTWNRRYHGPLRERD 110

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLP 178
             ++ +L+ + +   S    +L  P  + + A   YKVYTPF KA      ++  R   P
Sbjct: 111 AEIKTQLREQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDP 170

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKE--KVY 228
           +PA +LTGP TP       D P    DP +          GEQ AL  L  F     +  
Sbjct: 171 MPA-QLTGPDTPVADTGGIDAP----DPFWAAEMATHCRPGEQAALDRLGDFLDRMRERG 225

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y + RD  A   TS LSP+L  G +S  + W  +        I        +  EL+WR
Sbjct: 226 GYADGRDEMARAVTSGLSPHLRFGEISVHRVWEEITAAADAGDIDATDAQV-FRKELLWR 284

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH----------------------LLQAW 326
           +F  H +   P +        +  +  W  D H                       L AW
Sbjct: 285 DFAWHRLYALPDMATTNVREQFN-RFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAW 343

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           + G TG P++DA MR+L   G MHNR RM+ ASFL K+L + WR GEE+F   L+D D A
Sbjct: 344 RAGRTGIPLVDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPA 403

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SN   WQWAA +G+D+ PYFRIFNP  Q ++FDP  T+IR W+PE               
Sbjct: 404 SNAFNWQWAAGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPEYG------------- 450

Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
                 +  YP PIVD K++    L+ Y A K
Sbjct: 451 ------TPEYPAPIVDLKESRREALDAYEAVK 476


>gi|206603959|gb|EDZ40439.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 534

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 152/478 (31%), Positives = 232/478 (48%), Gaps = 34/478 (7%)

Query: 2   KATTAMSVHL---VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58
           +A T    H+   VW RN+LR+ DN  L  A       ++ VF+      +Q    ARQ 
Sbjct: 51  EAPTKTEAHISSIVWFRNNLRLLDNPPLREAAER--GPLLPVFVGE-HPGKQPPEGARQ- 106

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            +   SL ++  SLS++G    + +     D    L     + +  K+      + +  R
Sbjct: 107 WWQARSLRRLDHSLSRRGAPLLFLRG----DPATLLPDLATRLKADKILAMEAIDPDGRR 162

Query: 119 RDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPF-------RKALIQNLV 170
               L+  L  + V    F    L+ P  +       +KV+TPF           +    
Sbjct: 163 TQSRLQGALSGKPVELHLFPADYLISPADLPAGRRSPWKVFTPFWQRAQSHLPPPLPLPA 222

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
              L  +P P  R   P      P   D+  + +   +  GE+ A   L  F ++++  Y
Sbjct: 223 PDRLDGIPFP--RTETPDDWGWEPENPDWATE-MRGFWDPGEEGAWRRLHAFLEKRLENY 279

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD      +S LSP+L+ G +S R  W  +KE        P      +L+EL WREF
Sbjct: 280 RVRRDFLEEDTSSLLSPHLANGEISIRSVWWAIKES-----TAPDKDREKFLSELGWREF 334

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             HLM  +P +   +       +I W +D   L AW++G TG P++DA MRQL  +G++ 
Sbjct: 335 SAHLMWHHPDLASER-LHKERPEIRWREDPFSLLAWQKGRTGIPLVDAGMRQLRRLGFLP 393

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK+LL+DWR G E+F   L+D D A+N   WQW +  G D+ P+FRIFN
Sbjct: 394 NRVRMVAASFLVKNLLIDWRKGREWFADNLVDHDPANNAASWQWISGYGADAAPWFRIFN 453

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLNYPL--PIVD 462
           P +QG++FDP+G +++ +LPEL+ +  +YIH    AP + LD   +    P   PIVD
Sbjct: 454 PVLQGEKFDPEGRYVKTYLPELHGLSPRYIHCPWTAPAALLDSAGIGEQSPYRNPIVD 511


>gi|307292892|ref|ZP_07572738.1| DNA photolyase FAD-binding [Sphingobium chlorophenolicum L-1]
 gi|306880958|gb|EFN12174.1| DNA photolyase FAD-binding [Sphingobium chlorophenolicum L-1]
          Length = 458

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 159/485 (32%), Positives = 237/485 (48%), Gaps = 50/485 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67
           L+WLR DLR+ D  AL AA    +  VI V++     P QW+  G S     +++ SL  
Sbjct: 6   LLWLRQDLRLADQAALAAAVR--EGPVIPVYVLDDQAPRQWKMGGAS---RWWLHHSLAN 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL +KG      Q     DS+E L +   +    ++     YE      +K + KRL
Sbjct: 61  LDASLREKGSRLILRQG----DSVEQLVAIAEEVGAGRVHALHHYEPWWRNAEKAVAKRL 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +C   D  +LLPPG +       Y++YTPF +A+++ +  A     P    R+  P
Sbjct: 117 D---LCL-HDGGLLLPPGVVRTGGGSSYRIYTPFARAVMEQMPPATPVRAPS---RIDAP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                     D+    + P + +        GE  A   +  F  E   Y V  R++P+ 
Sbjct: 170 SDWPKSDSLADWGLLPVKPDWAVAFSSDWTPGEAGARTNVAAFLDEAADYDV-ARNLPSQ 228

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL----M 295
           +GTS+LSP+L  G +SP   W+R+        +     A ++L ELIWR+ Y H     M
Sbjct: 229 EGTSRLSPHLHFGEVSPAYVWHRI--------VGTGDDATTFLKELIWRD-YAHTQIWAM 279

Query: 296 AFYPSVCMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
             Y S      F  +PW +  E  +D    +AW+ G TG+PI+DA MRQL   GWMHNR+
Sbjct: 280 PTYGSENARPAFDAMPWRDLREAGED---FKAWQSGRTGYPIVDAGMRQLWATGWMHNRV 336

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL+K LL+DWR G  +F   L+D   A+N+  WQW A +G D+  + RI  P  
Sbjct: 337 RMIAASFLIKHLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMAPLT 396

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q ++FD  G +IR W+PEL ++  ++IH P +         +YP   + H++     L  
Sbjct: 397 QSEKFDAAG-YIRTWVPELAHLDDEHIHDPDA---HGIRPPDYPAKRIGHREGRERALAA 452

Query: 474 YYAAK 478
           +   K
Sbjct: 453 WGHGK 457


>gi|70727202|ref|YP_254118.1| hypothetical protein SH2203 [Staphylococcus haemolyticus JCSC1435]
 gi|68447928|dbj|BAE05512.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 457

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 139/469 (29%), Positives = 234/469 (49%), Gaps = 29/469 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           V L    RI +N  L+   H +   +   ++  P++  +   +  ++++ +  +      
Sbjct: 5   VILNRVFRINNN-PLFEYIHQNKEDIEKCYLIIPQEIFEEDDTDMKANYYFGVMQSFLND 63

Query: 72  LSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           L Q  I   +  Y    +F D  + ++   +   +   ++   Y+I  ++  K   K   
Sbjct: 64  LRQYDIEPFLLDYSDLGDFCDD-KSINEVIVAGDIMS-YHQESYDIRHLK--KAFNK--- 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           H +   +   +    P + +N   + YKV+T F KA    L + D  S       L+   
Sbjct: 117 HNITVTTVRANHYFKPSATMNKQGEPYKVFTSFYKAHRSKLRKHD--SYAYKLKDLSDLF 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             S      DY        F + E  A+     +  + +  Y   R+      TSQLS  
Sbjct: 175 VKSQQKLNQDYS------KFGLSESKAIKKWNDYIDQDIQNYETNREYLPEVLTSQLSII 228

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G++  +Q   +L E + +     +     ++ EL++REFY  LM  YP+    + F 
Sbjct: 229 LAYGIIDIKQIVTQLLERYEE----DEHNIEQFIRELMFREFYYVLMTQYPNTA-HEAFN 283

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                I+W  +    ++W +G+TGFPI+DAAM +LN  G+MHNR+RM+ + FL KDL +D
Sbjct: 284 EKYRDIKWEYNKDEFKSWCEGHTGFPIVDAAMTELNQTGFMHNRMRMVVSQFLTKDLFID 343

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W  GE+YF  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP+ Q +RFD    +I+ +
Sbjct: 344 WTWGEDYFRRKLIDFDSASNVHGWQWSASTGTDAVPYFRMFNPSRQSERFDKDALYIKTF 403

Query: 429 LPELNNVPTQYIHAP---HSWLDKNDLSL--NYPLPIVDHKKACHHTLN 472
           +P+LN+V  + +H P    + L++  + L  +YP P+VDHK+A  H ++
Sbjct: 404 IPQLNDVTPKLLHEPINHEAELEQEGIKLGQDYPKPLVDHKEARDHVMS 452


>gi|223042734|ref|ZP_03612782.1| putative deoxyribodipyrimidine photolyase [Staphylococcus capitis
           SK14]
 gi|222443588|gb|EEE49685.1| putative deoxyribodipyrimidine photolyase [Staphylococcus capitis
           SK14]
          Length = 457

 Score =  212 bits (540), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 126/345 (36%), Positives = 186/345 (53%), Gaps = 24/345 (6%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
             P    N+  + YKV+T F K     L++  + +  +  +   G  +   +    DY  
Sbjct: 129 FKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRTVYNYDIKDLAKVGVKSKQKLKG--DYSQ 186

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
             I       E+ A +    F  + +  Y   R+      TSQLS YL+ GVL   Q +N
Sbjct: 187 SGI------SEETAQYKWSDFLDKDIEDYDSNREYLPEVLTSQLSIYLAYGVLDIIQIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK---IEWNK 318
            L    +D   K +    +++ ELI+REFY  LM  YP        I + EK   + W+ 
Sbjct: 241 DL----LDGYDKDEQNYEAFIRELIFREFYYVLMTQYPKTAH----IAFKEKYQNLNWSY 292

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           +      WK+G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL +DW  GEEYF  
Sbjct: 293 NEDNFDLWKKGMTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFIDWTWGEEYFRQ 352

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ ++P LN+V  +
Sbjct: 353 KLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKKALYIKKFIPTLNDVDAK 412

Query: 439 YIHA--PHSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           Y+H    H    K    +L  +YP  +V+H ++  H ++++ A +
Sbjct: 413 YLHNTYKHERQIKEQGIELGKDYPKQMVNHSESRDHVMSEFKAME 457


>gi|130157|sp|P12768|PHR_STRGR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|47083|emb|CAA33161.1| unnamed protein product [Streptomyces griseus]
          Length = 455

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 145/470 (30%), Positives = 225/470 (47%), Gaps = 36/470 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V   +DLR+ DN  L AA  ++D +V+ +F+      R    +     F+   L 
Sbjct: 1   MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNPLAFLADCLA 59

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDS--YCLQQRVTKLFYNRQYEINEVRRDK 121
            +   L  +G   IV +    +      E   +    +   V++    R+  I E   D 
Sbjct: 60  ALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALADS 119

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTP-FRKALIQNL--VQADLRSL 177
             E  +   V+         L PG ++       + V+TP FR+   + +   Q   R++
Sbjct: 120 GRELHVHDAVVTA-------LAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTQTAPRTV 172

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDI 236
            VP    + P+   +         + + P     GE+    ++  +    +  Y +  D 
Sbjct: 173 RVPDGVASDPLPDRDC-------VENLSPGLARGGEEAGRKLVTSWLNGPMADYEDGHDD 225

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            A   TS+LSP+L  G +S  +  +R +E       K   G  +++ +L WR+F+  ++A
Sbjct: 226 LAGDATSRLSPHLHFGTVSAAELVHRARE-------KGGLGGEAFVRQLAWRDFHHQVLA 278

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P       + P  ++  W  D+  + AWK G TG+P++DAAMRQL   GWMHNR RM+
Sbjct: 279 DRPDASWSD-YRPRHDR--WRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARML 335

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K L VDWR G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGK
Sbjct: 336 AASFLTKTLYVDWREGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPN-RVLNPVIQGK 394

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           RFD +G ++R W+PEL  V    IH P      +   L+YP P+VD  +A
Sbjct: 395 RFDARGDYVRGWVPELAEVEGSAIHEPWKLQGLDRAGLDYPDPVVDLAEA 444


>gi|314933001|ref|ZP_07840367.1| putative deoxyribodipyrimidine photolyase [Staphylococcus caprae
           C87]
 gi|313654320|gb|EFS18076.1| putative deoxyribodipyrimidine photolyase [Staphylococcus caprae
           C87]
          Length = 457

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 182/340 (53%), Gaps = 18/340 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
             P    N+  + YKV+T F K     L++  + +  +  I   G  +   +   +    
Sbjct: 129 FKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRTVYNYDLKDIAKVGVKSKQKVKGNY---- 184

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
                   I E+NA +    F  + +  Y  +R+      TSQLS YL+ GVL   Q +N
Sbjct: 185 ----SQSGISEENAQYKWSDFLDKDIEDYDTKREYLPEVLTSQLSIYLAYGVLDIIQIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L    ++   K +    +++ ELI+REFY   M  YP       F    + + W+ +  
Sbjct: 241 DL----LNSYDKDEQNYEAFIRELIFREFYYVFMTQYPKTAH-HAFKEKYQNLNWSYNEE 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
               W +G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL +DW  GEEYF  +L+
Sbjct: 296 NFDLWTKGKTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFIDWTWGEEYFRQKLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ ++P LN+V  +Y+H
Sbjct: 356 DYDAASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKKALYIKKFIPILNDVDAKYLH 415

Query: 442 A--PHSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYYA 476
               H    K    +L  +YP  IVDH ++  H ++++ A
Sbjct: 416 DTYKHERQIKEQGIELGKDYPKQIVDHSESRDHVMSEFKA 455


>gi|206891163|ref|YP_002248985.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743101|gb|ACI22158.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 437

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 153/461 (33%), Positives = 223/461 (48%), Gaps = 49/461 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W + DLRI DN+AL+ AC NS  +VI VFI  P    +     R++ F+  SL  + K
Sbjct: 6   IFWFKRDLRIDDNRALFEACQNS-FEVIPVFIFIPSILERFKSYDRRTGFLIESLKHLSK 64

Query: 71  SLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQ 128
            + +KG  ++ +H     D+      +   +  +  +F NR +  +    ++ ++K  L 
Sbjct: 65  EIEKKGGRLYCFH-----DEPQRVFLTLIRKYGIQAIFTNRAFSWSGEEVEETVKKLCLN 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   +F+D+ L     I        K+Y+ F +   QNL             RLT   
Sbjct: 120 EGVDFVTFNDNFLAEIDKI-----PYRKIYSKFYRYWEQNL-------------RLTEVS 161

Query: 189 TPS--NIPRFFDYPFQAIDPMFPIGEQNAL----HILRKFCKEKVYYYVEQRDIPAIQGT 242
           +P   N P+  +     +       E+N +      +R+  +     Y E RD   I GT
Sbjct: 162 SPERINTPKLNEPEIDIVASEIS-HEKNIVWKPDFGIRRLKEFDFNRYEELRDRLDIDGT 220

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPY+  G++S R+ +    E               ++ EL WREF+ H+   +P   
Sbjct: 221 SKLSPYIRFGLISLRKIYRVASE--------AAGQDCQFIKELAWREFWYHIKLNFPQF- 271

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               F     KI W  D  L +A+ +  TG+P+IDAA+ QL    WMHNR RMI ASFL 
Sbjct: 272 KNLEFQEKRRKIRWQNDEKLYKAFIEAKTGYPLIDAAIIQLKQENWMHNRARMIVASFLT 331

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL++DWR GE +FM  L+D D   N G WQW AS G D  P  RIFNP IQ K+FDP  
Sbjct: 332 KDLMIDWRWGESFFMEHLIDYDEVVNVGNWQWNASVGPDPKP-LRIFNPIIQAKKFDPDC 390

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
            FI+ +LP L  +P+  +H P +        L Y  PIV+H
Sbjct: 391 KFIKKYLPSLKKLPSFMLHDPLT------HRLPYHKPIVNH 425


>gi|285017930|ref|YP_003375641.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas
           albilineans GPE PC73]
 gi|283473148|emb|CBA15654.1| putative deoxyribodipyrimidine photo-lyase; photolyase protein
           [Xanthomonas albilineans]
          Length = 503

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 234/473 (49%), Gaps = 35/473 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ D  AL+AA       V  V++ +PE        A    ++  SL 
Sbjct: 31  MSYAIVWFRRDLRLHDQPALHAALAAGHTPV-PVYLHSPEDEGDWAAGAASCAWLQRSLA 89

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L   G      +    + ++  + + C       +++NR+YE     RD  L++ 
Sbjct: 90  ALDAQLRACGSRLILRR-GPAEHALRQVIAEC---GAVAVYWNRRYEPATQPRDARLKRE 145

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLR---SLPVP- 180
           L+   +   S + ++L  P  +       YKV+TPF R AL +  V A +    +LP P 
Sbjct: 146 LRALGLEVHSHNGALLFEPWQLATQQGGPYKVFTPFWRSALSRWQVPAPMHAPATLPPPP 205

Query: 181 ------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                 A+   G ++  +  R F   ++   P    GEQ A   L  F    +  YV  R
Sbjct: 206 QALHSLALDALGLMSAHDWDRGF---WECWQP----GEQGAHEALDVFVDGALRDYVAGR 258

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P   GTS+LSP+L  G ++P +  + L++           G   ++ +L WR+F  HL
Sbjct: 259 DRPDQVGTSRLSPHLHFGEIAPWRIVSALQQHRRAATGTAIDG---YIRQLGWRDFAYHL 315

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +  +P     +   P  E+  W     + LQAW++G +G PI+DA +R+L   GWMHNR+
Sbjct: 316 LHHFPHTPE-RNLNPRFERFRWATPGPVQLQAWQRGRSGVPIVDAGLRELWRTGWMHNRV 374

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI AS+L K L V W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  
Sbjct: 375 RMIVASYLCKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVT 434

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL---NYPL-PIVD 462
           Q ++FDPQG +I  W+PEL  +P     AP  WL    L+    +YP  PIVD
Sbjct: 435 QAQKFDPQGAYIARWVPELAALPVADRFAP--WLVPQRLARVAPHYPRQPIVD 485


>gi|332671236|ref|YP_004454244.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484]
 gi|332340274|gb|AEE46857.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484]
          Length = 450

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 146/445 (32%), Positives = 214/445 (48%), Gaps = 38/445 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +VH  W R DLR+ DN AL AA   +   D  V+ +F+  P  W     +  +  ++  S
Sbjct: 3   TVH--WFRRDLRLADNPALVAAVEAARRADDAVVPLFVVDPGLW--TAAAGPRVAYLARS 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  +L  + +V               +++  +        Y R       RRD  + 
Sbjct: 59  LRALDAALDGRLVVRHGRPQDVVPAVAREVEAPTVHVTAATEPYGR-------RRDDAVA 111

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPA 181
           + L   V   +      + PG +       Y+V+TPFR+A + +   A     RS+P   
Sbjct: 112 QALGD-VPLVATGSPYAVAPGRLRTQQGSPYEVFTPFRRAWLDHGWSAPAPRPRSVPWAD 170

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +R  G      +P   D P   +D +   GE  A      F  + +  Y E RD P + G
Sbjct: 171 VRGDG------VP---DEPATTVD-LPAAGEAAARRRWATFVADALADYDEDRDRPDLDG 220

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAFYPS 300
           TS +S  L  G L PR           DL     S +  ++ +EL WREF+  ++  +P 
Sbjct: 221 TSSMSVPLKYGELHPRTL-------LADLAGAGSSASVATYRSELAWREFHADVLWHHPD 273

Query: 301 VCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                 +  +P               AW +G TG+P++DA MRQL  IGWMHNR+RM+TA
Sbjct: 274 AARRSLRTVVPEDAWATGPAADDAFAAWAEGRTGYPLVDAGMRQLRAIGWMHNRVRMVTA 333

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDL   W+ G E+F++ L+DGD+  N   WQW A TG D+ PYFR+FNP +QG+RF
Sbjct: 334 SFLVKDLHQRWQRGAEHFLAWLVDGDVPQNQLNWQWVAGTGRDAAPYFRVFNPVLQGRRF 393

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP 443
           DP GT++R W+PEL  +P   +H P
Sbjct: 394 DPDGTYVRQWVPELRGIPGGAVHEP 418


>gi|307329598|ref|ZP_07608757.1| Deoxyribodipyrimidine photo-lyase [Streptomyces violaceusniger Tu
           4113]
 gi|306884792|gb|EFN15819.1| Deoxyribodipyrimidine photo-lyase [Streptomyces violaceusniger Tu
           4113]
          Length = 454

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 143/471 (30%), Positives = 223/471 (47%), Gaps = 45/471 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  L    +DLR++DN  L  A  +++ +V+ +F+              +  F+  +L 
Sbjct: 1   MSTSLSVFTSDLRLSDNPVLRGATRSAE-RVVPLFVVDRGLAGTGFAVPNRVAFLADALA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G      +     D++  +     Q    ++           RR++ L + 
Sbjct: 60  DLDAGLRERGGRLVVRRG----DAVAEILRAARQADAEEVHIAGGVSGYATRREQRLREA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPF-----RKALIQNL-------VQA 172
           L+          +V+  + PG +       + V+TP+     R  L + L       V +
Sbjct: 116 LEADGRRLRVHGAVVTAVEPGEVAPAGKDHFAVFTPYFRAWQRAGLREALTAPRTVSVPS 175

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-LHILRKFCKEKVYYYV 231
            LRS PV A+    P +PS              P  P G + A    +R + +  +  Y 
Sbjct: 176 GLRSEPVAAVTSLAPGSPS--------------PGLPEGGETAGRRRVRSWWRSGLADYA 221

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           +++D  A   TS+LSPYL  G LSP +  +R ++          +GA +++ +L WR+F+
Sbjct: 222 DRQDDLAGDATSRLSPYLHFGCLSPVELVHRARKAG-------GAGADAFVRQLAWRDFH 274

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             ++A  P       + P  ++  W  D   + AWK G TG+P++DA MRQL   GWMHN
Sbjct: 275 HQVLAARPDAAHAD-YRPRGDR--WRHDEAEIAAWKAGRTGYPLVDAGMRQLRHEGWMHN 331

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R++ A FL K L  DWRIG  +F+  L+DGDLA+N   WQWAA TG D+ P  R+ NP
Sbjct: 332 RARLLVAGFLTKTLYQDWRIGARHFLDLLVDGDLANNQLNWQWAAGTGTDTRPN-RVLNP 390

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
             Q +RFDP G ++R W+PEL  V    +H P          L+YP PIVD
Sbjct: 391 LTQARRFDPDGAYVRRWVPELAEVTGSGVHTPWRLPKAERDRLDYPGPIVD 441


>gi|41409179|ref|NP_962015.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41397999|gb|AAS05629.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 442

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/474 (31%), Positives = 224/474 (47%), Gaps = 48/474 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ D+ AL AA  +SD +V+A F+  P   R  G   R+  F+  SL  ++ 
Sbjct: 4   LLWFRRDLRLHDHPALSAAA-DSD-EVLACFVLDPRLQRSSG--PRRLQFLGDSLRVLRD 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  + +V +        +  + + +       + +  +  +     RRD  +   L   
Sbjct: 60  ELDGRLLVTRGRPDIRIPEIAKAIGA-------SSVHVSEDFTPFGKRRDARVRAALAS- 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--- 187
           V   +     L+ PG +       Y+V+TPF +       +  +++    A R   P   
Sbjct: 112 VPLVATGSPYLVAPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPVKTGAASA-RWLDPARL 170

Query: 188 -VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +T   IP     P   +D     GE+ A +  + F    +  Y + R  P I+GTS++S
Sbjct: 171 GITDCEIPD----PGATLD--LAAGEEAARNKWKSFVDNGLANYADDRHRPDIEGTSRMS 224

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR          V  L    + A ++L EL +R+FY  ++   P+      
Sbjct: 225 AHLKFGTIHPRT--------LVADLDLRAAAARAYLRELAFRDFYADVLHHRPASAWRN- 275

Query: 307 FIPWTEKIE------WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              W    +        +      AWK G TGFP +DA MRQL   G+MHNR+RM  ASF
Sbjct: 276 ---WNSAFDAIRTDTGAEAGRRFAAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASF 332

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDL + W+ G  +F+ QL+DGDLA+N  GWQW A  G D+ PYFR+FNP  QG++FDP
Sbjct: 333 LVKDLHLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDP 392

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            G +IR W+PEL     +    PH  L   +    YP PIVDH       L +Y
Sbjct: 393 SGDYIRRWVPEL-----RCADDPH--LRTGERPPGYPAPIVDHATERAEALRRY 439


>gi|328887006|emb|CCA60245.1| Deoxyribodipyrimidine photolyase [Streptomyces venezuelae ATCC
           10712]
          Length = 457

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 146/469 (31%), Positives = 226/469 (48%), Gaps = 40/469 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L AA    + +V+ +F+  P   R    +  +  F+   L 
Sbjct: 1   MNVSVVLFTSDLRVHDHPPLRAALGRGN-EVVPLFVRDPAVARAGHAAPNRDAFLADCLA 59

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            +  +L ++G   +V      +     +   D+  +        + R+ E    R  +  
Sbjct: 60  ALDSALRERGGRLVVRSGDPVAEVCAVVREADADEVHMAAGCSGFARRREDRLRRALEAD 119

Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPA 181
            +RL  H  +  +      LP G++       Y V+TP FR+   + L +      P+ A
Sbjct: 120 GRRLYVHDAVVTA------LPTGAVTPGGSDHYAVFTPYFRRWSRERLRE------PLAA 167

Query: 182 IRLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            R+    TP  I R  D P +A        +   GEQ     L  +  E V  Y E+ D 
Sbjct: 168 PRVV--RTPRGI-RSEDLPARANVQSVSGGLAAGGEQEGRKRLAAWLAEDVDTYEERHDD 224

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            A   TS+LSPYL  G +S  +  +R +        +  +GA +++ +L WR+F+  ++A
Sbjct: 225 LAGDATSRLSPYLHFGAVSAAEAVHRARS-------RGGAGAEAFVRQLCWRDFHHQVLA 277

Query: 297 FYPSVCMGK---PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
             P             W    E   D   L+AW++G TG+P++DAAMRQL   GWMHNR 
Sbjct: 278 ARPDAASDDYRTRHDRWRRGTEAEAD---LRAWREGRTGYPVVDAAMRQLAHEGWMHNRG 334

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++TASFL K L +DWR G  +F+  L+DGDLA+N   WQW A TG DS P  R+ NP  
Sbjct: 335 RLLTASFLTKTLYIDWREGARHFLELLVDGDLANNQLNWQWMAGTGTDSRPN-RVLNPVT 393

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           Q KR+DP+G ++R W+PEL  +    +H P     +     +YP P+V+
Sbjct: 394 QAKRYDPEGAYVRRWVPELAGLEGPAVHEPWKLPGRERARYDYPDPMVE 442


>gi|271963152|ref|YP_003337348.1| deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
           43021]
 gi|270506327|gb|ACZ84605.1| Deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
           43021]
          Length = 425

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 152/458 (33%), Positives = 230/458 (50%), Gaps = 39/458 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASL 65
           M   +V    DLR+ D+ AL AAC ++  +V+ +F+  P      G+    ++ F+  SL
Sbjct: 1   MDTVIVLFNRDLRVHDHPALAAACADA-WRVVPLFVIDP------GVPGGHRAGFLAESL 53

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ SL ++G      Q     +++        Q        +    + + R  +L E+
Sbjct: 54  DDLRGSLRERGGDLVVRQGDPVAETLRLARELPAQAVYVSADVS---ALAQRRERRLAEE 110

Query: 126 RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IR 183
             +HR+  ++F    ++PP ++  +     Y+V+TP+ +       Q     L  PA +R
Sbjct: 111 CERHRMEFRAFPGVTIVPPDALRPSGGGDHYRVFTPYWRVWSG---QRRREVLGAPAKVR 167

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +   +    +P     P      +F  GE  A   +R++ K  V  Y +  D  A   TS
Sbjct: 168 IPEGLEAGPLPVAGHEPHG----LFRGGETVARERMRQWLKYCVEDYADGHDDLAGNRTS 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G LSP +    L E   D +            +L WR+F+  +   +P +  
Sbjct: 224 KLSPYLRFGCLSPLEL-ESLSENGDDFV-----------RQLCWRDFFHQVTRAFPRINR 271

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              + P  +  EW  D    QAWK+G TG PI+DA MRQL   GWMHNR RM+T+SFLV+
Sbjct: 272 DD-YRPQGQ--EWRDDEDAAQAWKEGRTGVPIVDAGMRQLLAEGWMHNRARMVTSSFLVR 328

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L VDWR+G E+F   LLDGD+++N G WQW A TGND+ P  RI NP  Q +RFDP+G 
Sbjct: 329 RLRVDWRVGAEHFFDLLLDGDVSNNYGNWQWVAGTGNDTRPN-RIVNPVRQARRFDPEGE 387

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           +IR +LPEL+ VP + I+ P  W     +   YP P+V
Sbjct: 388 YIRRYLPELDAVPVKMIYEP--WRMSTGIR-GYPAPLV 422


>gi|213613145|ref|ZP_03370971.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 141

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 95/141 (67%), Positives = 112/141 (79%)

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQLN  GWMHNRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG 
Sbjct: 1   RQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT 60

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D+ PYFRIFNPT Q +RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PI
Sbjct: 61  DAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPI 120

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
           V+HK+A   TL+ Y AA+K +
Sbjct: 121 VEHKQARIATLSAYEAARKGA 141


>gi|302557422|ref|ZP_07309764.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000]
 gi|302475040|gb|EFL38133.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000]
          Length = 457

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 223/467 (47%), Gaps = 36/467 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L+AA   +D +V+ +F+  P      G  A       A  L
Sbjct: 1   MTVAVVLFTSDLRLHDHPPLHAALRAAD-EVVPLFVLDP-GIHAAGFDAPNRRAFLADCL 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC------LQQRVTKLFYNRQYEINEVRRD 120
           +   +  ++       +       +  + + C      +   VT   + R+  + E   D
Sbjct: 59  RDLDASLRRRGGRLVVRAGPVAGEVCAVAAECGAAEVHMAAGVTAYAHRREERLRERLGD 118

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             +  R+   V+         + PG++       + V+TP+ +   +  ++   + LP P
Sbjct: 119 GGVALRVHDTVVTA-------VAPGAVTPSGSDHFAVFTPYFRRWDRERLR---KPLPAP 168

Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            A+R+   V    +P   D       P  P  GE+       ++  + +  Y +  D  A
Sbjct: 169 RAVRVPDGVRGRPVPERAD--VSGTSPGVPPGGEKAGRDRFSRWLGDGLSRYEDLHDDLA 226

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TS+LSPYL  G LSP +  +R +            G  +++ +L WR+F+  ++A  
Sbjct: 227 GDATSRLSPYLHFGALSPVELVHRARGHG-------GPGGDAFVRQLCWRDFHHQVLAAR 279

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P    G      T    W  +      + AW++G TG+P++DAAMRQL   GWMHNR R+
Sbjct: 280 PEASAGDYR---TRHDHWRGEEDAADDIAAWREGRTGYPVVDAAMRQLRHEGWMHNRARL 336

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL K L VDWRIG  +F+  L+DGD+ +N   WQW A TG D+ P+ R+ NP +Q 
Sbjct: 337 LVASFLTKTLYVDWRIGARHFLDLLVDGDVVNNQLNWQWVAGTGTDTRPH-RVLNPLVQA 395

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           KRFDP+G ++R W+PEL +V  + +H P    +     L YP P++D
Sbjct: 396 KRFDPEGAYVRRWVPELADVDGRAVHEPWRLPEDRRAGLGYPAPLID 442


>gi|152967497|ref|YP_001363281.1| deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans
           SRS30216]
 gi|151362014|gb|ABS05017.1| Deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans
           SRS30216]
          Length = 450

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 150/466 (32%), Positives = 227/466 (48%), Gaps = 26/466 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR++D+ AL AA  + D  V+ +F+  P  W   G   R   ++  SL  +  
Sbjct: 4   VLWFRRDLRLSDHPALLAAAADGD--VLPLFVIDPALWGPSGDVRRT--YLLRSLRSLDA 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-- 128
           +L    +V +        D    +D    +   +++           RRD  + + L   
Sbjct: 60  ALGGALVVER-------GDPAVVVDRVAARIGASRVHVTADAGPLGRRRDDAVGRALAAG 112

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            R + ++      + PG++   +   ++V+TPF +A   +   A   S    A+R  G  
Sbjct: 113 GRELVRT-GTPYAIGPGTLRTGSGSPFQVFTPFSRAWRAHGWPAPADS--PGAVRWVGDG 169

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
              +   + D P      +   GE  A     +F    +  Y   RD P   GTSQLS  
Sbjct: 170 EGVDGGHWPDEPDLGGLTLPEAGEDAAHERWHRFLDHALADYDGDRDRPDRDGTSQLSHA 229

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G L PR     L+ +          GA ++  EL WR+FY  ++   P     + + 
Sbjct: 230 LKWGELHPRTLLAALRGQ-------SSKGAETYATELCWRDFYADVLWHRPDSAR-EYYK 281

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           P    + + +     +AW +G TGFPI+DA MRQ+  +GW+HNR+RMITASFLVKDL V+
Sbjct: 282 PQLAGLRYAEPGEQFRAWAEGRTGFPIVDAGMRQMRAVGWVHNRVRMITASFLVKDLHVE 341

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W+ G   FM  L D DLASN  GWQW A +G D+ P+FR+FNP  QG+RFDP G ++R +
Sbjct: 342 WQHGGREFMHWLRDADLASNMHGWQWVAGSGTDASPFFRVFNPVTQGQRFDPDGDYVRRF 401

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +PEL ++P + +H P  W   +  +  YP  IVDH       L +Y
Sbjct: 402 VPELRHLPGKSVHTP--WEAADGYAHGYPERIVDHAHEREVALAEY 445


>gi|2564038|dbj|BAA22943.1| photolyase [Thermus thermophilus]
          Length = 420

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 140/432 (32%), Positives = 212/432 (49%), Gaps = 49/432 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R DLR+ D+ AL  A   +   V+ + +  P   +    + R+  +   ++ 
Sbjct: 1   MGPLLVWHRGDLRLHDHPALLEAL--ARGPVVGLVVLDPNNLK---TTPRRRAWFLENVR 55

Query: 67  QVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            ++++   +G    V +        ++   L +  +    +   Y R        RD  +
Sbjct: 56  ALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSYTPYGRY-------RDAKV 108

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++ L   +        +            + Y+VYTPF +  +   V+A    LP P   
Sbjct: 109 QEALPVPLHLLPAPHLLP-------PDLPRAYRVYTPFARRFLG--VEA---PLPAPEAL 156

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             GP     IPR         DP  P+   GE+ AL  LR F + K+  Y E+RD    +
Sbjct: 157 PKGPEE-GEIPR--------EDPGLPLPEPGEEAALAGLRAFLEAKLPAYAEERDRLDGE 207

Query: 241 GTSQLSPYLSIGVLSPR-QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           G S+LSPY ++GVLSPR   W   +        +   GA  W+ EL+WR+F  HL+  +P
Sbjct: 208 GGSRLSPYFALGVLSPRLAAWEAER--------RGGEGARKWVAELLWRDFSYHLLYHFP 259

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   +P  P  + + W +D  L +AW +G TG P++DAAMR+L+  G++ NR RM  A 
Sbjct: 260 WMAE-RPLDPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQ 318

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK LL+ W+  EE F   LLDGD A N  GWQWA   G D+ PYFR+FNP +QG+R D
Sbjct: 319 FAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHD 378

Query: 420 PQGTFIRHWLPE 431
           P+G +++ W PE
Sbjct: 379 PEGRWLKRWAPE 390


>gi|46255129|ref|YP_006041.1| deoxyribodipyrimidine photolyase [Thermus thermophilus HB27]
 gi|47606703|sp|P61496|PHR_THET2 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|46197978|gb|AAS82388.1| deoxyribodipyrimidine photolyase [Thermus thermophilus HB27]
          Length = 420

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 140/432 (32%), Positives = 212/432 (49%), Gaps = 49/432 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R DLR+ D+ AL  A   +   V+ + +  P   +    + R+  +   ++ 
Sbjct: 1   MGPLLVWHRGDLRLHDHPALLEAL--ARGPVVGLVVLDPNNLK---TTPRRRAWFLENVR 55

Query: 67  QVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            ++++   +G    V +        ++   L +  +    +   Y R        RD  +
Sbjct: 56  ALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSYTPYGRY-------RDAKV 108

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++ L   +        +            + Y+VYTPF +  +   V+A    LP P   
Sbjct: 109 QEALPVPLHLLPAPHLLP-------PDLPRAYRVYTPFARRFLG--VEA---PLPAPEAL 156

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             GP     IPR         DP  P+   GE+ AL  LR F + K+  Y E+RD    +
Sbjct: 157 PKGPEE-GEIPR--------EDPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGE 207

Query: 241 GTSQLSPYLSIGVLSPR-QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           G S+LSPY ++GVLSPR   W   +        +   GA  W+ EL+WR+F  HL+  +P
Sbjct: 208 GGSRLSPYFALGVLSPRLAAWEAER--------RGGEGARKWVAELLWRDFSYHLLYHFP 259

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   +P  P  + + W +D  L +AW +G TG P++DAAMR+L+  G++ NR RM  A 
Sbjct: 260 WMAE-RPLDPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQ 318

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK LL+ W+  EE F   LLDGD A N  GWQWA   G D+ PYFR+FNP +QG+R D
Sbjct: 319 FAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHD 378

Query: 420 PQGTFIRHWLPE 431
           P+G +++ W PE
Sbjct: 379 PEGRWLKRWAPE 390


>gi|318058735|ref|ZP_07977458.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actG]
          Length = 455

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 136/466 (29%), Positives = 226/466 (48%), Gaps = 36/466 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +A ++ F+   L 
Sbjct: 1   MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-----DK 121
            +   L ++G      +  +    +  L      +RV        Y  N   R     + 
Sbjct: 60  DLDAGLRERGGRLVV-RAGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAALEG 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLP 178
              + ++H  +  +      LPPG ++  +   + V+TP+ +      ++  L   R L 
Sbjct: 119 TGAELVEHEAVITA------LPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAPRKLS 172

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP 237
           VP+      V    +PR  D   + I P     GE+     L  + ++ +  Y +  D  
Sbjct: 173 VPS-----KVRSDGVPRRED--VEGISPGLARGGEREGRAKLASWRRDGISRYEDLHDDL 225

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A  GTS+LSPYL  G LS  +C +R +               +++ +L WR+F+  ++A 
Sbjct: 226 AGDGTSRLSPYLHFGALSAAECVHRARAAGGAGAD-------AFVRQLCWRDFHHQVLAA 278

Query: 298 YPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            P+    + + P  +      D+ H   AW++G TG+P++DAAMRQL   GWMHNR R++
Sbjct: 279 RPAAAH-EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLL 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K L +DWR+G  +F+  L+DGDL +N   WQW A TG D+ P  R+ NP  Q +
Sbjct: 338 AASFLTKTLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQAR 396

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           ++DP+G ++RHW+PEL  +  + +H P  W    +    YP P+VD
Sbjct: 397 KYDPEGDYVRHWVPELRGIEGRAVHEP--WKRPREEREGYPEPLVD 440


>gi|228475792|ref|ZP_04060509.1| deoxyribodipyrimidine photolyase [Staphylococcus hominis SK119]
 gi|228270140|gb|EEK11592.1| deoxyribodipyrimidine photolyase [Staphylococcus hominis SK119]
          Length = 457

 Score =  209 bits (532), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 142/473 (30%), Positives = 229/473 (48%), Gaps = 39/473 (8%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           V L    RI +N          DA      I   E + + G + +++++ Y +L +    
Sbjct: 5   VILNRVFRINNNPLFEYINQQKDAFDKCYLIIPKETFEEKG-TDKKANYYYGTLEKFLYK 63

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVRRDKLL 123
           L +       H    +      L  +C +  + ++        ++  +Y+I  ++     
Sbjct: 64  LKE-------HHIEPYVIDYSELGMFCTEHDIKEIVMAGDIMSYHQERYDIRHLK----- 111

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +    H +   + + +    P + +N   Q YKV+T F KA    L Q       +  I 
Sbjct: 112 QAFKNHDIPVITINVNHYFKPSNTMNQQGQPYKVFTSFYKAHRSKLRQHSPYQYQLSDIA 171

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +   I   + +  Q+ D      +    H ++ + K++ Y       +P I  TS
Sbjct: 172 NKCSQSQQKITNDYHHDGQSEDQALNNWKDYLNHSIQNYKKDREY-------LPEIL-TS 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G++  +Q    L E + +     +S   S++ E+++REFY  LMA YP +  
Sbjct: 224 QLSIVLAYGLIDIKQIITDLLERYKE----NESNYESFIREVMFREFYYVLMAQYPHIA- 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F      I+W+ +      W +G TGFPIIDAAM +LN  G+MHNR+RM+ + FL K
Sbjct: 279 HEAFNEKYRTIQWSYNKEEFNRWCEGQTGFPIIDAAMNELNETGFMHNRMRMVVSQFLTK 338

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE+YF  +L+D D ASN  GWQW+AS G D+VPYFR+FNP  Q +RFD    
Sbjct: 339 DLFIDWAWGEDYFRKKLIDYDAASNIHGWQWSASIGTDAVPYFRMFNPIRQSERFDKDAL 398

Query: 424 FIRHWLPELNNVPTQYIHAP---HSWLDKNDLSL--NYPLPIVDHKKACHHTL 471
           +I+ ++P  ++VP + +H P    + L K  + L  +YP PIVDHK A  H +
Sbjct: 399 YIKKYIPIFDHVPAKLLHHPFQHQTQLVKKGIQLGKDYPEPIVDHKVAREHVM 451


>gi|314937003|ref|ZP_07844350.1| putative deoxyribodipyrimidine photolyase [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655622|gb|EFS19367.1| putative deoxyribodipyrimidine photolyase [Staphylococcus hominis
           subsp. hominis C80]
          Length = 457

 Score =  209 bits (532), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 142/473 (30%), Positives = 229/473 (48%), Gaps = 39/473 (8%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           V L    RI +N          DA      I   E + + G + +++++ Y +L +    
Sbjct: 5   VILNRVFRINNNPLFEYINQQKDAFDKCYLIIPKETFEEKG-TDKKANYYYGTLEKFLYK 63

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVRRDKLL 123
           L +       H    +      L  +C +  + ++        ++  +Y+I  ++     
Sbjct: 64  LKE-------HHIEPYVIDYSELGMFCTEHDIKEIVMAGDIMSYHQERYDIRHLK----- 111

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +    H +   + + +    P + +N   Q YKV+T F KA    L Q       +  I 
Sbjct: 112 QAFKNHDIPVITINVNHYFKPSNTMNQQGQPYKVFTSFYKAHRSKLRQHSPYQYQLSDIA 171

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +   I   + +  Q+ D      +    H ++ + K++ Y       +P I  TS
Sbjct: 172 NKCSQSQQTITNDYHHDGQSEDQALNNWKDYLNHSIQNYKKDREY-------LPEIL-TS 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G++  +Q    L E + +     +S   S++ E+++REFY  LMA YP +  
Sbjct: 224 QLSIVLAYGLIDIKQIITDLLERYEE----NESNYESFIREVMFREFYYVLMAQYPHIA- 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F      I+W+ +      W +G TGFPIIDAAM +LN  G+MHNR+RM+ + FL K
Sbjct: 279 HEAFNEKYRTIQWSYNKEEFNRWCEGQTGFPIIDAAMNELNETGFMHNRMRMVVSQFLTK 338

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE+YF  +L+D D ASN  GWQW+AS G D+VPYFR+FNP  Q +RFD    
Sbjct: 339 DLFIDWAWGEDYFRKKLIDYDAASNIHGWQWSASIGTDAVPYFRMFNPIRQSERFDKDAL 398

Query: 424 FIRHWLPELNNVPTQYIHAP---HSWLDKNDLSL--NYPLPIVDHKKACHHTL 471
           +I+ ++P  ++VP + +H P    + L K  + L  +YP PIVDHK A  H +
Sbjct: 399 YIKKYIPIFDHVPAKLLHHPFQHQTQLVKKGIQLGKDYPEPIVDHKVAREHVM 451


>gi|320007131|gb|ADW01981.1| Deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC
           33331]
          Length = 459

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/466 (30%), Positives = 231/466 (49%), Gaps = 34/466 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L+AA  +SD +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MTVAIVLFTSDLRLHDHPPLHAALASSD-EVVPLFVLDPGVEAAGFAAPNRRAFLADCLR 59

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            +   L  +G   +V +          +   ++  +        Y +       RR++ L
Sbjct: 60  DLDSGLRDRGGRLVVREGEVAEEVRRIVSETEAGVVHMAAGISGYAQ-------RREERL 112

Query: 124 EKRLQHRVICK-SFDDSVL--LPPGSIL--NHALQMYKVYTPFRKALIQNLVQADLRSLP 178
            + L   V C+ S  D+V+  + PGS++        + V+TP+     +      LRS P
Sbjct: 113 REALSS-VGCRLSVHDAVVTAVAPGSVVPSGAGRDHFAVFTPY----FRRWSGEGLRS-P 166

Query: 179 VPAIR-LTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             A R +  P  P +         + + P +   GE     +   + ++ +  Y ++ D 
Sbjct: 167 FGAPRKVRVPEGPGSAALPSRAGTRGLSPGLAEGGETEGRRLFTAWRRDGLASYEDRHDD 226

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            A   TS+LSP+L  G LSP +  +R +            GA +++ ++ WR+F+  ++A
Sbjct: 227 MAGDATSRLSPHLHFGTLSPTELVHRAR-------ATGGPGAEAFVRQVCWRDFHHQVLA 279

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             P+V     + P  ++    + +     AWK+G TG+P++DAAMRQL   GWMHNR R+
Sbjct: 280 TRPAVSRSD-YRPKQDRWRTGRAAEADTAAWKEGRTGYPVVDAAMRQLLHEGWMHNRGRL 338

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TASFL K L VDWR G  +F+  L+DGD+A+N   WQW A TG DS P  R+ NP  Q 
Sbjct: 339 LTASFLAKTLYVDWRTGARHFLELLVDGDIANNQLNWQWVAGTGTDSRPN-RVLNPVTQA 397

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           KR+DP+G ++R W+PEL  +P   +H P     ++    +YP P+V
Sbjct: 398 KRYDPEGAYVRRWVPELAGIPGSAVHEPWKLPREDRRRYDYPEPVV 443


>gi|310831104|ref|YP_003969747.1| putative CPD class I photolyase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386288|gb|ADO67148.1| putative CPD class I photolyase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 474

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 148/480 (30%), Positives = 240/480 (50%), Gaps = 29/480 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-ISARQSHFIYASLLQV 68
           +L   R DLRI DN  L+ A    +   I +FI T +Q   +  +S     F+  SL  +
Sbjct: 3   NLFIFRRDLRIIDNLGLHQAL--KETNTIPIFIFTHQQVINNPYLSDNSFGFLIESLEDL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127
            K +S+      Y   +     I+ +        + K++ N+ +    + R DKLLE   
Sbjct: 61  SKQISKNKGKLYYFLTNKNTTEIDIISQIIQYNNILKIYTNKDWTPYAKKRDDKLLEFGK 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF---RKALIQNLVQ-ADLRSLPVPAIR 183
           +  +I    +D  LLP GSI  +    YK++TPF    K L +N+ +   +       I+
Sbjct: 121 KENIIINLIEDYTLLPMGSICTNNNTAYKIFTPFYNKSKELWKNIPKPTKVNKYKFNKIK 180

Query: 184 LTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               +  + N+     Y       +   G +NAL  L+K   +K Y  +++ ++  +  T
Sbjct: 181 FINLIKSNINLSAMKQYYKSNSFRLVQGGRKNALLQLKKIKNQKEYS-IKRNNL--MYET 237

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + LS Y+  G +S R+ + + K+      +K  +  +S   +L WREFY ++  +Y  V 
Sbjct: 238 THLSAYIKFGCISIREVFYKFKK-----YLKDNNTLYS---QLFWREFYTYITHYYQYVL 289

Query: 303 MG----KPFIPWTEK---IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            G    K  + + EK    +W+ +   L  WK+G TGFPI+DA +++L T G+MHNR R+
Sbjct: 290 QGQISNKVNLDFQEKYGNFKWSNNKTFLNKWKKGETGFPIVDAGIKELLTTGYMHNRSRL 349

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +T++FL+K  L+DWR GE+YF  +L D D A NNGGWQ+    G  +  YFRI +P  Q 
Sbjct: 350 LTSAFLIKLCLIDWREGEKYFAQKLTDYDPAQNNGGWQFHHG-GASNADYFRIISPISQA 408

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKACHHTLNQY 474
            RFD    +I+ WLP L ++  +++     +    DL+ LNY  P+ D+KK    +L  Y
Sbjct: 409 NRFDKNAEYIKKWLPNLKDIKPKHLLDWEQYYSCYDLNKLNYFKPMFDYKKQRELSLKTY 468


>gi|256790273|ref|ZP_05528704.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
 gi|289774148|ref|ZP_06533526.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
 gi|289704347|gb|EFD71776.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
          Length = 457

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/474 (29%), Positives = 228/474 (48%), Gaps = 50/474 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA------RQSHF 60
           M+V +V   +DLR+ D+  L+AA   +D +V+ +F+      R  GI A       +  F
Sbjct: 1   MTVAVVLFTSDLRLHDHPPLHAALQAAD-EVVPLFV------RDTGIHAAGFDAPNRRAF 53

Query: 61  IYASLLQVQKSLSQKG---------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
           +   L  +  SL  +G         +V +    +    S E      +   VT   + R+
Sbjct: 54  LADCLSDLDSSLRHRGGRLVVRDGPVVREVRSVAAQCGSTE----VHVAAGVTGYAHRRE 109

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
             + E  RD  +   +   VI         + PG++         V+TP+ +   +   +
Sbjct: 110 ERLREGLRDDGVSLHVHEPVITA-------VAPGAVTPAGSDHVAVFTPYFRRWSR---E 159

Query: 172 ADLRSLPVP-AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-LRKFCKEKVYY 229
           +  + L  P  +R+   V    +P   D       P  P G + A      ++ +  +  
Sbjct: 160 SPRKPLAAPRTVRVPRGVRGEPLPDRAD--VAGASPGLPAGGETAGRDRFARWSRSGLSR 217

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y ++ D  A   TS+LSPYL  G LSP +  +R +            GA +++ ++ WR+
Sbjct: 218 YEDRHDDLADDATSRLSPYLHFGALSPLELVHRARAHG-------GPGAEAFVRQVCWRD 270

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           F+  ++A  P   + K +    ++    +D+   + AW+ G TG+P++DAAMRQL   GW
Sbjct: 271 FHHQVLAARPEASV-KDYRTRHDRWRGEEDAAEDIAAWRDGRTGYPVVDAAMRQLRHQGW 329

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR R++ A FL K L VDWRIG  +F+  L+DGD+ +N   WQWAA TG D+ P+ R+
Sbjct: 330 MHNRARLLVAGFLTKTLYVDWRIGARHFLDLLVDGDVVNNQLNWQWAAGTGTDTRPH-RV 388

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
            NP +Q +RFDP G ++R W+PEL +V    +H P          L+YP P+V+
Sbjct: 389 LNPLVQARRFDPDGVYVRRWVPELRSVEGGKVHEPWRLAAAERGELDYPDPLVE 442


>gi|34557872|ref|NP_907687.1| deoxyribodipyrimidine photo-lyase [Wolinella succinogenes DSM 1740]
 gi|34483590|emb|CAE10587.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE DNA PHOTOLYASEPHOTOREACTIVATING
           ENZYME [Wolinella succinogenes]
          Length = 447

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 228/467 (48%), Gaps = 41/467 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ DN+        +  +V+ +FI             R+  +IY  +++++ 
Sbjct: 4   LIWFRRDLRLEDNRTF----EQASGEVLPLFIFDSHLLSPLPKEDRRVGYIYGEVMRLKS 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  +G+         + + ++ L S   +Q  ++LF ++ Y+   + RD+   + L  R
Sbjct: 60  ELRARGLDLAIF----YGEPLKIL-SRLKEQGFSRLFASQDYDSYALSRDEAARELLDCR 114

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +     D+ L  P  +L      Y +++ +    ++ L +          + L   + P
Sbjct: 115 FVL----DNYLFDPNEVLKKEGSPYTIFSAYYNQSLKILSEGHY----AKGLDLPKKLAP 166

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHIL-RKFCKE---KVYYYVEQRDIPAIQGTSQLS 246
             IP           P+ P+ E  +L IL +K  +E   K+  Y   RD    + TS LS
Sbjct: 167 YPIPAPPSLESMGFSPL-PLLE--SLKILPQKRLEEFSSKITRYALDRDSLEAEATSGLS 223

Query: 247 PYLSIGVLSPRQCWNRLK---EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            +L  G L  R+   RLK   EE +   + P      +  +++WREFY  L+  +P    
Sbjct: 224 LFLRFGTLGVREVIRRLKVWQEEGIK--VAP------FYRQILWREFYAMLLYHFPH-SE 274

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   ++ W++    L+ W++G  G P++DA MR+LN  G+MHNR RM+ ASFL K
Sbjct: 275 REDFKPM--QMRWSESQERLERWQKGECGVPLVDAGMRELNHTGFMHNRARMVCASFLTK 332

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L + W  GE YF S+LLD D+A N G WQW A +G D+ P+FRIFNP  Q  +FDP+G 
Sbjct: 333 NLHLHWSWGERYFASKLLDYDVAQNAGNWQWCAGSGADAQPFFRIFNPYTQSLKFDPKGE 392

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           +++ W+PEL  + TQ   +   W     L   Y  PIV  K++    
Sbjct: 393 YVKRWIPELRGISTQNWSSEERW---EGLKERYLAPIVSAKRSAQEA 436


>gi|293191025|ref|ZP_06609069.1| deoxyribodipyrimidine photolyase family protein [Actinomyces
           odontolyticus F0309]
 gi|292820712|gb|EFF79678.1| deoxyribodipyrimidine photolyase family protein [Actinomyces
           odontolyticus F0309]
          Length = 475

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 148/449 (32%), Positives = 215/449 (47%), Gaps = 44/449 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI----ATPEQWRQHG---ISARQSHFIYA 63
           L+WLR+DLR+ D+ AL AAC  +D  V+A++I     T E   +HG   + A    + + 
Sbjct: 4   LIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWYHR 63

Query: 64  SLLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           SL Q+   L+  GI  VF     +N    +  +D+     + T + + R+Y     R D 
Sbjct: 64  SLQQLAPRLADLGIPLVFTRGDAANVMRRV--VDAL----QPTVVHWTRRYAPAACRLDA 117

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +++ L  R    S   S+L  P  +       Y+V+TPF  A + +L    L   P P 
Sbjct: 118 AIKQELTSRTEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHA-VADLPLTSLLPEPSPI 176

Query: 182 IRLTGPVTP-------------SNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKE 225
               G  T               +I    + P    + +   +  GE  A   L      
Sbjct: 177 GERGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDAI-DS 235

Query: 226 KVYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWL 282
            +  Y  +RD+P  +  TS++SP L  G LSPRQ                 SG    +W 
Sbjct: 236 WLPGYATRRDLPGEETSTSRISPRLRCGELSPRQA-------VAAARTSTASGEDIVAWT 288

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +L WREF  HL+  +       P  P   +  +  D HL +AW+QG TG  ++DA MRQ
Sbjct: 289 RQLYWREFSWHLL-HHREHLEDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQ 347

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GWMHNR+RM+ AS L K++L  W+ GE++F   L+D D A+N   WQW A  G D+
Sbjct: 348 LWQTGWMHNRVRMVAASLLTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADA 407

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
            PYFRIFNP +Q  RFDP+  ++R W+PE
Sbjct: 408 APYFRIFNPDLQRTRFDPRSRYVRRWIPE 436


>gi|19551863|ref|NP_599865.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
           13032]
 gi|62389521|ref|YP_224923.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
           13032]
 gi|41324855|emb|CAF19337.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE [Corynebacterium glutamicum ATCC
           13032]
          Length = 482

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 164/505 (32%), Positives = 236/505 (46%), Gaps = 77/505 (15%)

Query: 8   SVHLVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           S  L+W R+DLR++DN AL +AA H     VI +FI   ++     I A    +   SL 
Sbjct: 21  SPTLLWFRDDLRLSDNAALKWAADH---GPVIGLFI---DETINRSIGAAARWWREQSLN 74

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + LS  G+           + +E L     +  V  + +NR+Y       D  L+K 
Sbjct: 75  ALAQDLSFYGVPL----LRRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKN 130

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPA 181
           L+ + I   S    +L  P  +       YKV+TPF KA  +    +  +    ++PVP+
Sbjct: 131 LRDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPS 190

Query: 182 IRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             LTGP          + PF +   +    P GE+NA   L  F  E +  Y + RD  A
Sbjct: 191 -HLTGPEDVELPILEMEQPFWSTTLVKECAP-GEKNASEKLFDFL-EHLQDYPQARDSLA 247

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TS+LS +L  G +S  + W        +       G   +L EL+WR+F  H +   
Sbjct: 248 RSATSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYAL 300

Query: 299 PSV-------------------------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
           P +                             P IP T+  ++++D   L AW+ G TG 
Sbjct: 301 PHMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIP-TKADQFHED---LAAWRAGKTGI 356

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           P++DA MR+L   G MHNR+RM+ ASFL K+L + WR GEE+F   L+D D ASN   WQ
Sbjct: 357 PLVDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQ 416

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453
           WAA +G+D+ PYFRIFNP  Q K+FDP  T+IR W+PE                     +
Sbjct: 417 WAAGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------T 457

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAK 478
            +YP PIVD K++    L+ Y A K
Sbjct: 458 PSYPDPIVDLKESRQIALDAYSAIK 482


>gi|315499875|ref|YP_004088678.1| DNA photolyase fad-binding protein [Asticcacaulis excentricus CB
           48]
 gi|315417887|gb|ADU14527.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB
           48]
          Length = 484

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 153/498 (30%), Positives = 229/498 (45%), Gaps = 49/498 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R+DLR+ D++ + A   NS + V+ V+I   EQ  Q  + A    ++  SL  + +
Sbjct: 6   ILWFRSDLRLQDHEGVEATL-NSGSPVVPVYIYD-EQLAQRPLGAASKWWLDRSLRSLDQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL  +G      + S    ++  L     Q   T+L  +R +E      D  L K L   
Sbjct: 64  SLRARGARLIVLKGS----ALAQLKRLIGQVSATRLIASRTFEPKIDAFDAQLSKALG-- 117

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +  + F+  +L  P  I       YKV+TPF +AL   L +   R     A+    P  P
Sbjct: 118 IPVEIFNTHLLSDPTQIRTGDGNPYKVFTPFYRAL---LARGAARGHARKALATPWPA-P 173

Query: 191 SNIPRFFDYPFQAIDPMFPI--------------GEQNALHILRKFCKEKVYYYVEQRDI 236
           +  P   D     + P   +              GE  A   L  F +  +  Y   RD 
Sbjct: 174 AEWPESVDIDALGLKPALTLSGHDWSEGFDVWTPGEDGAHQRLSAFLRSGLKGYAPDRDR 233

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEE------FVDLLIKPKSGAFSWLNELIWREF 290
           P +  TS+LSP+L  G +SP +  +  +          D L K ++       EL WR+F
Sbjct: 234 PDLDITSRLSPHLRFGEISPHRVLHEAEAHAAAHPALSDDLEKFRA-------ELAWRDF 286

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             +++   P +     F    + + W  D   L+AW++G TG+ ++DA MRQL   G+MH
Sbjct: 287 SYNILQLQPELDRVN-FKSAFDAMPWRDDPAGLRAWQRGETGYSLVDAGMRQLWRTGFMH 345

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL K LL+DWR GE++F   L+D D ASN   WQW A +G D+ PYFRIFN
Sbjct: 346 NRVRMVCASFLSKHLLIDWRQGEQWFWDTLVDADPASNTASWQWVAGSGADAAPYFRIFN 405

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---------DLSLNYPLPIV 461
           P  Q ++FDP+G + R ++            A H   +++           S   P  IV
Sbjct: 406 PLTQAEKFDPKGAYRRRFVSGFTEKIAGAASAHHQKFERDLFDFAGVSASNSKGAPRLIV 465

Query: 462 DHKKACHHTLNQYYAAKK 479
           DH  A    L+ Y   KK
Sbjct: 466 DHAVARQRALDAYAQMKK 483


>gi|332557576|ref|ZP_08411898.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
 gi|332275288|gb|EGJ20603.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
          Length = 471

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 145/478 (30%), Positives = 220/478 (46%), Gaps = 33/478 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L  A       +I +FI  PE      + A     +   +    +
Sbjct: 8   ILWFRRDLRLADNPMLAEAAATGR-PLIPLFILDPET---EALGAAPKWRLGLGVEAFAR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      ++  L++   +     + ++R +E     RD+ ++  L+  
Sbjct: 64  ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQA 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187
            I   S     +  P  +       Y+VYTPF KA+    V A   S P PA RL  P  
Sbjct: 120 GIEAASHAGHTIFEPWEVETGQGGFYRVYTPFWKAVKDRPVAA---SFPPPA-RLPSPAE 175

Query: 188 ------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                 +   ++ R  +     + P   +GE  A   L +F    +  Y  +RD P    
Sbjct: 176 WPVSERLASWDLGRAMNRGAAVVAPHLAVGEAAAAERLTRFMSGPLDRYAAERDRPDAPV 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LS  L+ G +S R  W+      +    + ++GA  +L EL WREF  HL+   P +
Sbjct: 236 TSRLSENLTYGEISARSLWH----AGMRARAEGRAGAEKFLQELAWREFGWHLLYHTPEI 291

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   W +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L
Sbjct: 292 ARRNWRGDW-DAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYL 350

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFRIFNP  Q ++FDP+
Sbjct: 351 TKHLLTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPE 410

Query: 422 GTFIRHWLPELNNVPT----QYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
             + + +L E+   P      ++ A P SW  + D    YP P+V   +     L  Y
Sbjct: 411 SAYRQRFLAEIARRPGPEALAFLEAVPRSWGLRPDRC--YPRPVVGLAEGRERALAAY 466


>gi|38232742|ref|NP_938509.1| putative riboflavin biosynthesis protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199000|emb|CAE48617.1| Putative riboflavin biosynthesis protein [Corynebacterium
           diphtheriae]
          Length = 446

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 155/482 (32%), Positives = 224/482 (46%), Gaps = 54/482 (11%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +VW R+DLR+ DN AL  A      + A + AV+IA     R  G + +   +++ SLL 
Sbjct: 6   VVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKW--WLHHSLLA 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126
           + + L+Q+G+  + H  S   D +  L         T +  NR+Y+       D  +   
Sbjct: 64  LSEQLAQRGV--RLHVLSG--DPLTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADA 119

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             H V    F   +L  PG I       YKV+TPF + L   +    L +L  P  +   
Sbjct: 120 SAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPP-KAEQ 178

Query: 187 PVTPSNI-PRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           P+  +       D  + A     I   +  GE  A   L +   + +  Y++ RD P I 
Sbjct: 179 PIDDTETQAAIADLGWDAWWAASISKAWTPGEPAAREALAEL-DDILPRYLDDRDRPDID 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS+LSP L  G LS  + WN              S  F    +L+WR+F  H +  +P 
Sbjct: 238 GTSRLSPRLRFGELSVAEVWNHAH----------TSEGFR--RQLMWRDFAWHRLDAHPD 285

Query: 301 VCMGKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +       P  +   W+       L AW+ G TG  ++DA MR+L   G MHNR+RM+ A
Sbjct: 286 MATAN-IRPEFDHFPWDGGDFEAELNAWRHGRTGIALVDAGMRELWATGTMHNRVRMVAA 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LVK+L + WR GE++F   L+D D ASN   WQW A +G+D+ PYFRIFNP  Q +RF
Sbjct: 345 SLLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFRIFNPDTQARRF 404

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYYAA 477
           DP GT+   WLP                     +S +YP   IVD K++    L+ Y A 
Sbjct: 405 DPDGTYRTRWLPI--------------------MSADYPEEAIVDLKESRLRALDAYNAC 444

Query: 478 KK 479
           K+
Sbjct: 445 KR 446


>gi|21323395|dbj|BAB98023.1| Deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
           13032]
          Length = 468

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 164/505 (32%), Positives = 236/505 (46%), Gaps = 77/505 (15%)

Query: 8   SVHLVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           S  L+W R+DLR++DN AL +AA H     VI +FI   ++     I A    +   SL 
Sbjct: 7   SPTLLWFRDDLRLSDNAALKWAADH---GPVIGLFI---DETINRSIGAAARWWREQSLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + LS  G+           + +E L     +  V  + +NR+Y       D  L+K 
Sbjct: 61  ALAQDLSFYGVPL----LRRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKN 116

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPA 181
           L+ + I   S    +L  P  +       YKV+TPF KA  +    +  +    ++PVP+
Sbjct: 117 LRDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPS 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             LTGP          + PF +   +    P GE+NA   L  F  E +  Y + RD  A
Sbjct: 177 -HLTGPEDVELPILEMEQPFWSTTLVKECAP-GEKNASEKLFDFL-EHLQDYPQARDSLA 233

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TS+LS +L  G +S  + W        +       G   +L EL+WR+F  H +   
Sbjct: 234 RSATSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYAL 286

Query: 299 PSV-------------------------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
           P +                             P IP T+  ++++D   L AW+ G TG 
Sbjct: 287 PHMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIP-TKADQFHED---LAAWRAGKTGI 342

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           P++DA MR+L   G MHNR+RM+ ASFL K+L + WR GEE+F   L+D D ASN   WQ
Sbjct: 343 PLVDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQ 402

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453
           WAA +G+D+ PYFRIFNP  Q K+FDP  T+IR W+PE                     +
Sbjct: 403 WAAGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------T 443

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAK 478
            +YP PIVD K++    L+ Y A K
Sbjct: 444 PSYPDPIVDLKESRQIALDAYSAIK 468


>gi|164655927|ref|XP_001729092.1| hypothetical protein MGL_3880 [Malassezia globosa CBS 7966]
 gi|159102981|gb|EDP41878.1| hypothetical protein MGL_3880 [Malassezia globosa CBS 7966]
          Length = 400

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/265 (43%), Positives = 151/265 (56%), Gaps = 29/265 (10%)

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           P  P G + A HIL +F K KV  Y E RDIP   GTSQLSPYL+ G +SP +  + L+E
Sbjct: 29  PWIP-GSETAHHILTEFLKTKVSRYSESRDIPFESGTSQLSPYLAHGEISPHRVLHALRE 87

Query: 266 EFVDLLI-KPK-SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW-----------TE 312
             ++    KP    + ++  ELIWREF  HL+   P +        W           ++
Sbjct: 88  VRLNRDTPKPAIESSKTFERELIWREFNYHLLYHQPDLATQNHNEQWNLFTWSQMATESQ 147

Query: 313 KIEWNKDSHL---------------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
             E+++   L                  W+ G+TGFPI+DA MRQL  IGWMHNR+RMIT
Sbjct: 148 LTEFSRTGELPPSTDEQNALNTAAAYDCWRAGHTGFPIVDAGMRQLWKIGWMHNRVRMIT 207

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS L+K+L + WR+GEE+F + L+D D ASN G WQW A TG D+ P+FRIFNP  Q  R
Sbjct: 208 ASLLIKNLRIHWRLGEEWFWNTLVDADPASNPGNWQWVAGTGADAAPFFRIFNPARQADR 267

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHA 442
           FD +  ++R W+PEL    TQ + A
Sbjct: 268 FDQKCAYVRTWVPELKTKTTQEVAA 292


>gi|239636691|ref|ZP_04677693.1| deoxyribodipyrimidine photo-lyase [Staphylococcus warneri L37603]
 gi|239598046|gb|EEQ80541.1| deoxyribodipyrimidine photo-lyase [Staphylococcus warneri L37603]
          Length = 456

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 123/330 (37%), Positives = 173/330 (52%), Gaps = 18/330 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
             P    N+  + YKV+T F K     ++Q       +  I  +  V P+  P       
Sbjct: 129 FSPRKTFNNQGEPYKVFTSFYKKWRPYVMQRHRAHYELSDI--SKIVEPAYAPT------ 180

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
           Q  D    + E+      + F    +  Y   R       TSQLS  L+ G++   Q +N
Sbjct: 181 QINDSHSGLTEKEVQQQWQSFLNNDIQNYESNRAYLPEVLTSQLSIALAYGLIDILQVFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L + +       +S   +++ ELI+REFY  LM  YP     + F      I+W  D  
Sbjct: 241 DLLQGYE----SDESNYEAFIRELIFREFYYVLMTQYPETA-HQSFKEKYRNIDWVNDKQ 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
               WK G TG+PI+DAAM++LN  G+MHNR+RM+T+ FL KDLL+DWR GE YF  +L+
Sbjct: 296 QFNKWKNGETGYPIVDAAMQELNQTGYMHNRMRMVTSQFLTKDLLIDWRWGETYFKDKLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD    +I+ WLP  NNV +  +H
Sbjct: 356 DYDNASNVHGWQWSASTGTDAVPYFRMFNPIKQSERFDQNALYIKQWLPTFNNVDSHLLH 415

Query: 442 --APHSWLDKN---DLSLNYPLPIVDHKKA 466
               H  L K    +L ++YP P+V+H  +
Sbjct: 416 DTKKHMQLLKQQGIELGIDYPEPMVNHSDS 445


>gi|322510730|gb|ADX06044.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake
           phycodnavirus 1]
          Length = 443

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 152/475 (32%), Positives = 233/475 (49%), Gaps = 48/475 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L   R D R+ DN  L  A  N    VI +FI TPEQ  ++       H +   L +  +
Sbjct: 4   LFIFRRDFRVQDNVGLNYAMTNF-KNVIPIFIFTPEQIDKNKNKYFSDHSV-QFLCECLE 61

Query: 71  SLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            L +K G+   Y    N   SI           +T + +N+ Y     +RDK +E+  Q 
Sbjct: 62  ELKEKIGLHIFYGDYMNVIRSIH------KDHHLTHIVFNQDYSPYSRKRDKTIEQWCQS 115

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I C   +D +L P G+        Y VYTPF+  + QN       S+P+P  R    +
Sbjct: 116 EQIDCIMTEDYLLQPIGTFNKKDGSPYVVYTPFKDNIFQN------HSVPMPKKRGVKHI 169

Query: 189 TPSNI---PRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              +    P +    DY       +   G ++ L  L+K       +   +R+    + T
Sbjct: 170 KHIDFRSNPYYKEKMDYYVYNKHNLVKGGRKHGLKQLKKS------HATYERNKLNTE-T 222

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + LS Y+  G LS R+ ++  K++  DL            ++L+WREF+ ++  ++P + 
Sbjct: 223 THLSSYIKYGCLSIREVYHSFKDD--DLK-----------SQLVWREFFYYINYYFPELI 269

Query: 303 -MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K +    + I+W ++   L AWK G TGFP++DA MRQLN  G+MHNR R+I+A+FL
Sbjct: 270 DKSKSYQSKYDAIKWVQNKKHLDAWKHGQTGFPVVDACMRQLNHSGYMHNRGRLISANFL 329

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDP 420
            + L ++WR GE YF   L+D D   NN  WQW +S G D+ PY  R+FNP +Q KRFD 
Sbjct: 330 NRILGINWRSGELYFAQTLIDYDPCVNNANWQWVSSVGIDTKPYSQRVFNPWLQSKRFDA 389

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           Q  +I+ W+PEL +V  + I   H W +     +++YP P+VD+      +L  Y
Sbjct: 390 QCDYIKKWIPELKDVAPKDI---HQWDISCKQYNVDYPCPMVDYALCRERSLKMY 441


>gi|119960573|ref|YP_946305.1| deoxyribodipyrimidine photolyase [Arthrobacter aurescens TC1]
 gi|119947432|gb|ABM06343.1| putative deoxyribodipyrimidine photolyase [Arthrobacter aurescens
           TC1]
          Length = 465

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 152/493 (30%), Positives = 218/493 (44%), Gaps = 60/493 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +VW R+DLR+ DN AL AA  +  A  + V        R HG +AR   +++ SL 
Sbjct: 1   MKPSIVWFRDDLRVADNPALRAAVDDGAAVALYVLDEESPGIRPHGGAARW--WLHHSLT 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L + G+     +    D     L           L++NR+Y   E   D  ++  
Sbjct: 59  ALRGDLDKLGVPLLLRRGPATDV----LRETTTAIGAGGLYWNRRYGSAERTVDADIKAW 114

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                +   SF  S+L  P  +       YKV+TPF + +     +  L ++P      T
Sbjct: 115 AGEAGLHVSSFQASLLHEPWEVTTKTGGQYKVFTPFWRTVSAQDFREPL-AVPEAGHGFT 173

Query: 186 GPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           G +   +       +P   D+    +  M+  G       L +F  + +  Y E R+ P 
Sbjct: 174 GKLPVYDQLESWQLLPTKPDWS-GGLAEMWTPGAAAGHKRLARFVADGLSNYSEGRNRPD 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             G+S LSPYL  G LSP + W+ L         K    A  + +EL WREF  H     
Sbjct: 233 TDGSSCLSPYLRWGELSPFEVWHALGS-------KRSESASIYASELGWREFCWHQYFHN 285

Query: 299 PSVCMGKPFIPWTEKIEW-----------------NKDSHLLQAWKQGYTGFPIIDAAMR 341
           P +       P  ++  W                        +AW+QG TGFP++DA  R
Sbjct: 286 PQLATAN-LRPEFDRFPWAWPGKNGNGNGGRHPGHESAPEEFRAWQQGRTGFPMVDAGQR 344

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           QL   GWMHNR+RM+ ASFLVK+L + W++GE++F   L+D D ASN   WQW A +G D
Sbjct: 345 QLWHTGWMHNRVRMVAASFLVKNLGIHWQLGEQWFWDTLVDADPASNPANWQWVAGSGAD 404

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           + P+FRIFNP  Q  +FDPQG +I HWLP+                     +  YP  IV
Sbjct: 405 ASPFFRIFNPEAQRVKFDPQGRYIAHWLPDFG-------------------TPEYPEEIV 445

Query: 462 DHKKACHHTLNQY 474
           D K      L  Y
Sbjct: 446 DLKTTRAEALEAY 458


>gi|77462693|ref|YP_352197.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           2.4.1]
 gi|77387111|gb|ABA78296.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           2.4.1]
          Length = 471

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 145/477 (30%), Positives = 219/477 (45%), Gaps = 31/477 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L  A       +I +FI  PE      + A     +   +    +
Sbjct: 8   ILWFRRDLRLADNPMLAEAAATGR-PLIPLFILDPET---EALGAAPKWRLGLGVEAFAR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      ++  L++   +     + ++R +E +   RD+ ++  L+  
Sbjct: 64  ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPDWRARDEGVKAGLRQA 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--- 186
            I   S     +  P  +       Y+VYTPF KA+    V A   S P PA  L+    
Sbjct: 120 GIEAASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAA---SSPPPARLLSPAEW 176

Query: 187 PVTPS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           PV+      ++ R        + P   +GE  A   L +F    +  Y  +RD P    T
Sbjct: 177 PVSERLACWDLGRAMHRGAAVVAPHLAVGEAAAAERLTRFLSGPLDRYAAERDRPDAPVT 236

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS  L+ G +S R  W+      +    + ++GA  +L EL WREF  HL+   P + 
Sbjct: 237 SRLSENLTYGEISARSLWH----AGMRARAEGRAGAEKFLQELAWREFGWHLLYHTPEIA 292

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                  W +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L 
Sbjct: 293 RRNWRGDW-DAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLT 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFRIFNP  Q ++FDP+ 
Sbjct: 352 KHLLTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPES 411

Query: 423 TFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            + + +L E+   P     A     P SW  + D    YP P+V   +     L  Y
Sbjct: 412 AYRQRFLAEIARRPGPEALAFFEAVPRSWGLRPDRC--YPRPVVGLAEGRERALAAY 466


>gi|21219363|ref|NP_625142.1| deoxyribodipyrimidine photolyase [Streptomyces coelicolor A3(2)]
 gi|5459246|emb|CAB48919.1| putative deoxyribodipyrimidine photolyase [Streptomyces coelicolor
           A3(2)]
          Length = 458

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 138/445 (31%), Positives = 215/445 (48%), Gaps = 30/445 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +V    DLR+ D+  L AA   SDA V+ +F+         G +A     + A  L
Sbjct: 1   MATSVVLFTRDLRLHDHPPLRAALDRSDA-VVPLFVRD-RAVDAAGFAAPNRLALLADCL 58

Query: 67  Q-VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +   L  +G            D +E + +   +    ++        +  RR++LL  
Sbjct: 59  RDLDSGLRDRGGRLVVRSG----DLVEEVCAVAGEAEADEVHLAADVSAHAHRREELLRS 114

Query: 126 RLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-I 182
            L  R       D+V  +L PGS+   +   + V+TP+ +   +  V+     L  P  +
Sbjct: 115 ALSARGCRLHVHDAVTTVLAPGSVTPASSDHFAVFTPYFRRWSERAVR---EPLAAPRRV 171

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           R+   V    +P   D     + P  P G E++A   L  + +  +  Y +  D  A   
Sbjct: 172 RVPDGVGSEPLPARGD--LTGLSPGLPTGGERDARKRLTAWLRGGIADYADHHDDLAGDA 229

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP L +G LSP +  +R +            GA +++ +L WR+F+  ++A  P  
Sbjct: 230 TSRLSPDLHLGALSPVELVHRARRAG-------GPGAEAFVRQLAWRDFHHQVLAARPHA 282

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                    T    W   +        W+ G TG+P++DAAMRQL   GWMHNR R++ A
Sbjct: 283 SAADYR---TRHDRWRTGAAAEADAAAWRDGRTGYPVVDAAMRQLRHEGWMHNRGRLLVA 339

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K L VDWR+G  +F+  L+DGD+A+N   WQWAA TG D+ P+ R+ NPT Q +RF
Sbjct: 340 SFLTKTLYVDWRVGAWHFLELLVDGDVANNQLNWQWAAGTGTDTRPH-RVLNPTTQARRF 398

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP 443
           DP GT++R W+PEL  +  + +H P
Sbjct: 399 DPGGTYVRRWVPELAGLAGRSVHEP 423


>gi|296171175|ref|ZP_06852623.1| deoxyribodipyrimidine photolyase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894311|gb|EFG74066.1| deoxyribodipyrimidine photolyase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 443

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 176/342 (51%), Gaps = 32/342 (9%)

Query: 141 LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN--IPRFFD 198
           L+ PG +       Y+V+TPF    ++   +   RS           + P    IP+  D
Sbjct: 123 LVSPGRVTKQDGTPYQVFTPF----LRKWREVGWRSPAKSGAESAHWIDPDQVAIPQC-D 177

Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258
            P          GE+ AL     F  + +  Y   RD P ++ TS++S +L  G + PR 
Sbjct: 178 IPDPGATLDLAAGERAALFEWEAFVNDGLERYAADRDRPDLEATSRMSAHLKFGSIHPRT 237

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-- 316
                     DL ++ + GA ++L EL +R+FY  ++  +P+      +  W  + +   
Sbjct: 238 M-------VADLDLR-EPGAQAYLRELAFRDFYADVLHHWPASA----WRNWNHQFDGIR 285

Query: 317 ----NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
                +     ++WK G TGFP++DA MRQL   G++HNR+RMI ASFLVKDL + W+ G
Sbjct: 286 TDTGAEAKRRFESWKAGETGFPLVDAGMRQLRETGFVHNRVRMIVASFLVKDLHLPWQWG 345

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
            E+F+ QL+DGD+A+N  GWQW A  G D+ PYFR+FNPT Q  +FDP G +IR W+PEL
Sbjct: 346 AEWFLDQLVDGDMANNQHGWQWCAGCGTDAAPYFRVFNPTSQAAKFDPSGDYIRRWVPEL 405

Query: 433 NNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            +V   +       L K +    YP PIVDH       L +Y
Sbjct: 406 RSVDDAH-------LRKGERPAGYPAPIVDHGAERAEALRRY 440


>gi|258541536|ref|YP_003186969.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632614|dbj|BAH98589.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635671|dbj|BAI01640.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638726|dbj|BAI04688.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641780|dbj|BAI07735.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644835|dbj|BAI10783.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647890|dbj|BAI13831.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650943|dbj|BAI16877.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653934|dbj|BAI19861.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-12]
          Length = 309

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 116/257 (45%), Positives = 150/257 (58%), Gaps = 11/257 (4%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK--EEF 267
           GE+ A   L +F +  +  Y  QRD   A  GTS LSPY+ +G +S RQ W+ ++  E  
Sbjct: 46  GEKAAHANLHRFIENALADYETQRDRADAPHGTSLLSPYIRVGQISVRQIWHAIRHAEHQ 105

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
              L  P   A  +L EL WR+F    M   P +   +      + + W  D+  L AW+
Sbjct: 106 NPHLATP---AEKFLAELGWRDFAWMQMFTTPDLAT-RNLRAEFDHMPWRADAADLAAWQ 161

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           QG TGFP++DA MRQL   GWMHNR+RM+ ASFL K LL DWR GE +F +QLLD D A 
Sbjct: 162 QGQTGFPLVDAGMRQLARTGWMHNRVRMVVASFLTKHLLTDWREGERWFYAQLLDADAAV 221

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N   WQW A TG D+ P+FRIFNP  Q +++DP G +IR W+PEL  +  + IH P  W 
Sbjct: 222 NAMNWQWGAGTGIDAAPWFRIFNPVGQSEKYDPAGQYIRTWVPELAALDNKTIHTP--W- 278

Query: 448 DKNDLSLNYPLPIVDHK 464
            K+   L YP PIVD K
Sbjct: 279 -KSTQRLKYPAPIVDLK 294


>gi|332185330|ref|ZP_08387079.1| DNA photolyase family protein [Sphingomonas sp. S17]
 gi|332015054|gb|EGI57110.1| DNA photolyase family protein [Sphingomonas sp. S17]
          Length = 455

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 150/480 (31%), Positives = 226/480 (47%), Gaps = 51/480 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYAS 64
           S H+VW R DLR+ D  AL AA       V+ V+I    TP  W+  G      H    +
Sbjct: 3   SPHIVWFRQDLRLHDQPALLAAAEA--GPVLPVYILDDETPGDWKMGGAQRWWLHHSLEA 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +  K+L  + I+ +         ++E L +   +     +   R YE    + +  L 
Sbjct: 61  LAKDLKALGSRLILRRGR-------AVEVLQALSKEAGAEAIHAIRHYEPWWRKAEDELG 113

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            RL     C  +D + L  P  +   + + +++Y+ F K L  ++       L  P   L
Sbjct: 114 DRL-----CL-YDGNHLARPELVTTGSGKPFRIYSAFWKGLQGHMPPE--HPLEAPDA-L 164

Query: 185 TGPVTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           T P       +  D+             D  +  GE  A   +  F   K   Y   R++
Sbjct: 165 TAPDRWPASDKLADWDLLPTKPDWSTGFDADWTPGEATARERMADFVA-KAAAYDTARNM 223

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ +G+S+LSP+L  G +SPR  W+ L           K+   ++  EL WR+F   ++ 
Sbjct: 224 PSEEGSSRLSPHLHFGEVSPRAVWHALDR---------KAETETFRKELAWRDFTDGVVM 274

Query: 297 FYPSVC--MGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             P      G+     +PW +  E   D   L+AW+ G+TG+PI+DA MRQL T GWMHN
Sbjct: 275 AIPDYADRNGREAFDKMPWRKGAEAEAD---LKAWRTGHTGYPIVDAGMRQLWTTGWMHN 331

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMITASFL+K LL+DWR GE +F   L+D D  +N+  WQW A TG D+  + RI  P
Sbjct: 332 RVRMITASFLIKHLLIDWREGERWFWDCLVDADYGNNSVNWQWVAGTGIDANMFGRIMAP 391

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
             Q ++FD  G +IR W+PEL ++    IH P    +      +YP  I+ H++     L
Sbjct: 392 LSQSEKFD-AGDYIREWVPELKDLSDAAIHDPD---EAGCRPKDYPAKIIGHREGRERAL 447


>gi|239983112|ref|ZP_04705636.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074]
 gi|291454944|ref|ZP_06594334.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074]
 gi|291357893|gb|EFE84795.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074]
          Length = 457

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 139/463 (30%), Positives = 224/463 (48%), Gaps = 30/463 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D  AL AA   +DA V+ +F+           +  ++ F+   L 
Sbjct: 1   MTVSIVLFTSDLRLHDQPALRAALDATDA-VVPLFVRDDAVAEAGFAAPNRAAFLADCLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWL-----DSYCLQQRVTKLFYNRQYEINEVRRDK 121
            +  SL ++G           ++    +     D   L + V+  F  R+ E      + 
Sbjct: 60  DLDHSLRERGGRLVIRSGDLVEEVCRVVTEADADEVHLAEGVSA-FARRREERLREALES 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVP 180
              +   H  +  +      LPPG++   +   + V+TP FRK   Q+L       L  P
Sbjct: 119 EGRRLFVHEGVTTA------LPPGAVTPASSDHFAVFTPYFRKWSEQHLRH----PLGAP 168

Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             +R+   +    +P   D    +   +   GE      L  + +     Y +Q D  A 
Sbjct: 169 RTVRVPDGIGSEKVPARGDVRGVSAG-LAAGGESEGRDRLTAWLRRDAGAYEDQHDDLAG 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LSP+L  G LS  +  +R +        K  +GA +++ +L WR+F+  ++A  P
Sbjct: 228 DATSRLSPHLHFGTLSAAELVHRARR-------KEGAGATAFVRQLCWRDFHHQVLAARP 280

Query: 300 SVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                  +    +     +D+    +AW++G TG+PI+DAAMRQL   GWMHNR R++ A
Sbjct: 281 DASHAD-YRAREDHWRTGRDAEQETEAWREGRTGYPIVDAAMRQLAHEGWMHNRGRLLAA 339

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K L VDWR G ++F+S L+DGD+A+N   WQW A TG D+ P+ R+ NP  Q  R+
Sbjct: 340 SFLSKTLYVDWRTGADHFLSLLVDGDIANNQMNWQWVAGTGTDTRPH-RVLNPVRQAHRY 398

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           DP G ++R W+PEL  V  + +H P +    +   ++YP P+V
Sbjct: 399 DPDGAYVRRWVPELAGVEGKAVHEPWTLEGFDRAGIDYPEPVV 441


>gi|86136341|ref|ZP_01054920.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor)
           [Roseobacter sp. MED193]
 gi|85827215|gb|EAQ47411.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor)
           [Roseobacter sp. MED193]
          Length = 470

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 157/496 (31%), Positives = 233/496 (46%), Gaps = 64/496 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI--------ATPEQWRQHGISARQSHFIY 62
           ++W R D R+ D++AL+AA  NS+  VI V +            +WR   +S    HF  
Sbjct: 8   IIWFRKDFRLADHQALFAAS-NSERPVIPVVVLDELTQTYGAAPKWR---LSKAIEHFA- 62

Query: 63  ASLLQVQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             L QV   L  ++G   Q             L +   +     +++ R Y+ + + RD 
Sbjct: 63  DRLNQVGSRLILRRGPAAQE------------LLALAQETGAGDIWWTRAYDPDAIARDT 110

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            ++  L       KS+   +L  P ++       +KVY+P  +A+    V A     P P
Sbjct: 111 KVKSTLTDAGFKAKSWPGQLLFEPWAVKTKQGGFFKVYSPMWRAVKDLDVAA-----PSP 165

Query: 181 AIR---------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
           A +         ++ P+    + +      + +     +GE  A   L +F    +  Y 
Sbjct: 166 APKFLMAPETWPVSDPLQGWQLDKGMQRGARILSAHACVGEVAANTRLAQFLDVAIDGYK 225

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E+RD PA+  TS LS  L+ G + P   W+      +   ++ + GA  +L EL+WREF 
Sbjct: 226 ERRDYPALNATSGLSENLAWGEIGPATVWH----AGLRAHLEGQRGAEHFLKELVWREFA 281

Query: 292 RHLMAFYPSVCMGK-----PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            HL    P +            PW+E    ++D  +L+ WKQG TG P++DAAMR+L   
Sbjct: 282 YHLAFHTPKITQENWKSQWNDFPWSE----HEDEAVLR-WKQGRTGVPLVDAAMRELYVT 336

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G MHNR RMI ASFL K +L  WRIG+++F   L+D D A+N  GWQW A  G D+ PYF
Sbjct: 337 GHMHNRSRMIVASFLTKHMLKHWRIGQKWFEDCLIDWDPAANAMGWQWVAGCGPDAAPYF 396

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSW-LDKNDLSLNYPLPI 460
           RIFNP  Q K+FD +  +I+ +L E    P     A     P +W L K+D    YP PI
Sbjct: 397 RIFNPETQAKKFDAEQQYIQRFLAERAPTPGPEALAFFDACPRAWALSKDD---PYPTPI 453

Query: 461 VDHKKACHHTLNQYYA 476
           V   +  H  L  Y A
Sbjct: 454 VGLAEGRHRALTAYAA 469


>gi|308178900|ref|YP_003918306.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117]
 gi|307746363|emb|CBT77335.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117]
          Length = 464

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 213/443 (48%), Gaps = 29/443 (6%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           + + + L+W R+DLR  DN AL +A   +   VIAVFI   +      +      +++  
Sbjct: 4   SPLPLQLMWFRDDLRTADNPALSSAL--AAGPVIAVFILDQQSPGIRPLGGAAKWWLHHG 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  ++ +L   GI     +     DSI  +     Q     + +NR+Y   E   D   +
Sbjct: 62  LKSLRAALEDLGIPLVLRKGPA--DSI--MTELARQTNAQAVHWNRRYGQPERAVDTRAK 117

Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             L+      +S+  ++L  P  +L      YKV+TPF  AL  + ++      P+PA  
Sbjct: 118 TALRGLGREARSYPGTLLHEPWELLTKKGTGYKVFTPFYNALGDSAIRP-----PLPAPL 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVE 232
                + + IP   +     + P            +  GE  A H L    +     Y E
Sbjct: 173 GQDTFSAAGIPNGLELEDLELLPATAQWTAGLAAQWEPGEAPARHRLENVLESIAQDYPE 232

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
             D P + GTS LSP L  G L   + W+ L     +   K  +GA +   +L WR+F  
Sbjct: 233 HHDRPDLDGTSALSPALRWGHLGAHEMWDALGRLAAEN-PKAGAGATAMRRQLAWRDFCW 291

Query: 293 HLMAFYPSV---CMGKPF--IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           HL   +P +    +   F    W    +  + +  +Q W++G TGF ++DA M+QL   G
Sbjct: 292 HLYYHHPQLPDRNLRTDFDHFDWVWPEQDQQVASYVQLWQKGRTGFGLVDAGMQQLWQTG 351

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNR+RM+ AS LVK+L V W++GE +F   L+D D+ASN   WQW A +G D+ PYFR
Sbjct: 352 WMHNRVRMVAASLLVKNLQVHWKVGERWFWDTLVDADIASNTANWQWVAGSGADAAPYFR 411

Query: 408 IFNPTIQGKRFDPQGTFIRHWLP 430
           +FNP +Q K+FDPQG+++  + P
Sbjct: 412 VFNPELQAKKFDPQGSYVSQFAP 434


>gi|87199776|ref|YP_497033.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135457|gb|ABD26199.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 454

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 233/477 (48%), Gaps = 38/477 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+            ++  VI V+I   +  R   +      +++ SL ++  
Sbjct: 6   IVWFRRDLRLA--DQAALLAAAAEGPVIPVYILDDDTPRHCRMGGASRWWLHHSLAELDA 63

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           SL + G  ++ +  +C       E L +   +     +   + YE      +K + K + 
Sbjct: 64  SLRKLGSRLILRRGKCH------EELAAVRREAGARVVHALQHYEPWWRNAEKAVAKTI- 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIRL 184
            R++    + + L P GS+     + YK+YTPF  AL++ +  A        L  PA+  
Sbjct: 117 -RLVL--HEGNYLAPAGSVRTGMGRPYKIYTPFWHALLERMPPAPPLPAPERLEAPAVWP 173

Query: 185 TGPVTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           T         +P   D+     +   P GE  A   L+ F  ++V  Y E R++P+I+GT
Sbjct: 174 TSDALDDWKLLPTAPDWAGGFRETWTP-GENGAEERLQDFA-DRVARYGETRNLPSIEGT 231

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP+L  G +SP   W+R+        +        +L EL WR++ ++++  +P   
Sbjct: 232 SRLSPHLHFGEISPATIWHRV--------VNAGGSVDVFLGELGWRDYAQNVIVQFPDYG 283

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                  + +++EW  D   L+AW+QG TG+PI+DA MR+L   GWMHNR+RMI ASFLV
Sbjct: 284 SRNAREAY-DRLEWRDDPEALRAWQQGRTGYPIVDAGMRELWHTGWMHNRVRMIAASFLV 342

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE +F   L+D D ASN   WQW A TG DS  + RI  P  Q  +FD  G
Sbjct: 343 KHLLIDWREGERWFWDTLVDADYASNAVNWQWTAGTGVDSNMFVRIMAPLTQSPKFDAAG 402

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            +IR W+PEL ++  + IH P            YP  IV H +A    L  +   K+
Sbjct: 403 -YIRQWVPELAHLSDRDIHDPAV------PPRGYPAKIVSHSEARARALAAHDRMKQ 452


>gi|282862663|ref|ZP_06271724.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. ACTE]
 gi|282562349|gb|EFB67890.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. ACTE]
          Length = 459

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 138/470 (29%), Positives = 231/470 (49%), Gaps = 40/470 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V   +DLR+ D+  L+AA  ++D +V+ +F+      R    +  +  F+   L 
Sbjct: 1   MSVAVVLFTSDLRLHDHPPLHAALASAD-EVVPLFVRDDAVARAGFCAPNREAFLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G           D+    +     +    ++        +  RR++ L + 
Sbjct: 60  DLDAGLRDRGGRLVIRSGEIVDE----VRRVVTETGAGEVHLAADVSGHAQRREERLREA 115

Query: 127 LQ--------HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-L 177
           L         H  +  +     ++P GS  +H    + V+TP+     ++  Q  LR+  
Sbjct: 116 LASAGCRLRVHDAVVTAVAPGAVVPSGSGKDH----FAVFTPY----FRSWSQVGLRTPF 167

Query: 178 PVP-AIRLTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
             P A+R+  P  P++ P         +   +   GE+     +  + ++ +  Y ++ D
Sbjct: 168 GAPRAVRM--PDGPASEPVPERSRVSGVSRGVAEGGEREGRRRMTAWRRQGLGRYEDRHD 225

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
             A   TS+LSP+L  G LSP +  +R +           +GA +++ +L WR+F+  ++
Sbjct: 226 DLAGDATSRLSPHLHFGTLSPTELIHRARS-------AGGAGAEAFVRQLCWRDFHHQVL 278

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           A  P+          T    W  +   +  ++AWK+G TG+P++DAAMRQL   GWMHNR
Sbjct: 279 AARPAASHADYR---TRDDRWRTERTAAGDIEAWKEGRTGYPLVDAAMRQLRHEGWMHNR 335

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R++TASFLVK L VDWRIG  +F+  L+DGD+A+N   WQW A TG DS P  R+ NP 
Sbjct: 336 GRLLTASFLVKTLYVDWRIGARHFLELLVDGDIANNQLNWQWMAGTGTDSRPN-RVLNPV 394

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           +Q KR+D  G ++R W+PEL  +    +H P     +   +L+YP P++D
Sbjct: 395 VQAKRYDTDGAYVRRWVPELEKLGAPAVHEPWRLTGRERAALDYPEPLLD 444


>gi|295840351|ref|ZP_06827284.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
 gi|295827937|gb|EFG65724.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
          Length = 455

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/465 (29%), Positives = 222/465 (47%), Gaps = 34/465 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +  ++ F+   L 
Sbjct: 1   MKASIVLYTSDLRLHDHPPLRAATREAE-EVVPLFVRDPGIEKAGFTAPNRAAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G               E + S   ++       +        R    LE  
Sbjct: 60  GLDAGLRERGGRLVVRAGDPVRIVRELVGSTGAERVHVAAGLSAYARGRADRLRTALEGT 119

Query: 127 ----LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQ--ADLRSLPV 179
               ++H  +  +      L PG ++      + V+TP+ R+   Q L +  A  R+L V
Sbjct: 120 GAELVEHEAVVTA------LQPGELVPGGKDHFAVFTPYHRQWSAQPLREPLAAPRALTV 173

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P+      V    +PR  D   + + P +   GE     +L  + ++ V  Y E  D  A
Sbjct: 174 PS-----GVRSDAVPRRAD--VEGVSPGLAEGGEAAGRALLAAWRRDGVSRYEEMHDDLA 226

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             GTS+LSPYL  G LS  +C +R++               +++ +L WR+F+  ++A  
Sbjct: 227 GDGTSRLSPYLHFGALSAAECVHRVRAAGGAGAD-------AFVRQLCWRDFHHQVLAAR 279

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           P+    K + P  +     + +     AW++G TG+P++DAAMRQL   GWMHNR R++ 
Sbjct: 280 PAAAH-KDYRPRGDHWRTGRSAEREAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLA 338

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K L +DWR+G  +F+  L DGDLA+N   WQW A TG D+ P  R+ NP  Q ++
Sbjct: 339 ASFLTKTLYLDWRLGAAHFLDLLADGDLANNQMNWQWVAGTGTDTRP-GRVLNPLTQARK 397

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           +DP+G ++R W+PEL  +  + +H P  W         YP P+VD
Sbjct: 398 YDPEGDYVRRWVPELRGIEGRAVHEP--WKRPAGEREGYPRPLVD 440


>gi|154250062|ref|YP_001410887.1| deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153998|gb|ABS61230.1| Deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 436

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 154/493 (31%), Positives = 240/493 (48%), Gaps = 88/493 (17%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           +S++L   + DLR+ DNKAL+ A  NS +K+I +F+      ++     ++  F+    +
Sbjct: 2   LSMYL--FKRDLRLDDNKALFEALKNS-SKIIPIFVFNKTILKEFNAYNQKVGFV----V 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            V K++S+K  ++ +H     D+ +E+L S   + +   L+  + +      RD+ +EK 
Sbjct: 55  DVLKNISKKINLYVFHGED--DEILEFLFS---KYKPDALYTAQSFSWQGEERDRNIEK- 108

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMY------KVYTPFRK----------------A 164
                +C+  +    +   ++ ++ L  +      KV+TPF K                 
Sbjct: 109 -----VCRKCN----VKFHAVFDNYLADFRKIPYTKVFTPFYKKWLGYVESQEYEINIEE 159

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
           L + +V  DL ++    ++    +   N    +DY F+                LR +  
Sbjct: 160 LKRKVVALDLDTIDTILVKFP-ELNQKNEVFTYDYGFER---------------LRSYDF 203

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSW 281
            K   Y EQRD P +  +S+LSPY+  GVLS R+  N   ++  EFV             
Sbjct: 204 AK---YQEQRDFPGLDMSSRLSPYIRFGVLSIRKIHNIASKVSPEFV------------- 247

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
             +L WREF+ H+   + S      F+     + W  D  L + +    TG+PI+DA +R
Sbjct: 248 -RQLAWREFWYHIKYNF-SEFNKLEFLEKRRNVRWRYDEKLFEKFVNAQTGYPIVDAGIR 305

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           QL    WMHNR+R+I A+FLVKDLL+DWRIGE++F   LLD D   N G WQW+AS G D
Sbjct: 306 QLKQENWMHNRVRLIVANFLVKDLLIDWRIGEKFFREYLLDYDEVLNVGNWQWSASVGPD 365

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
             P  RIFNP IQ ++FDP   +I+ ++PEL N     IH P  +       LNY  PIV
Sbjct: 366 PKP-LRIFNPMIQSEKFDPNCEYIKKYIPELKNEENYKIHNPLEY------KLNYYEPIV 418

Query: 462 DHKKACHHTLNQY 474
           +H +A   T   Y
Sbjct: 419 NHYEAVQITKRLY 431


>gi|256789597|ref|ZP_05528028.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
 gi|289773486|ref|ZP_06532864.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
 gi|289703685|gb|EFD71114.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
          Length = 458

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/444 (29%), Positives = 210/444 (47%), Gaps = 28/444 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +V    DLR+ D+  L AA   SDA V+ +F+           +  +   +   L 
Sbjct: 1   MATSVVLFTRDLRLHDHPPLRAALDRSDA-VVPLFVRDRAVGAAGFAAPNRLALLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G            D +E + +   +    ++        +  RR++LL   
Sbjct: 60  DLDSGLRDRGGRLVVRSG----DLVEEVCAVAGEAEADEVHLAADVSAHAHRREELLRSA 115

Query: 127 LQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IR 183
           L  R       D+V  +L PGS+   +   + V+TP+ +   +  V+     L  P  +R
Sbjct: 116 LSARGCRLHVHDAVTTVLAPGSVTPASSDHFAVFTPYFRRWSERAVR---EPLAAPRRVR 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +   V    +P   D     + P  P G E++A   L  + +  +  Y +  D  A   T
Sbjct: 173 VPDGVGSEPLPARGD--LTGLSPGLPTGGERDARKRLTAWLRGGIAGYADHHDDLAGDAT 230

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP L +G LSP +  +R +            GA +++ +L WR+F+  ++A  P   
Sbjct: 231 SRLSPDLHLGALSPVELVHRARRAG-------GPGAEAFVRQLAWRDFHHQVLAARPHAS 283

Query: 303 MGKPFIPWTEKIEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                   T    W   +        W+ G TG+P++DAAMRQL   GWMHNR R++ AS
Sbjct: 284 AADYR---TRHDRWRTGAAAEADAAAWRDGRTGYPVVDAAMRQLRHEGWMHNRGRLLVAS 340

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P+ R+ NPT Q +RFD
Sbjct: 341 FLTKTLYVDWRVGARHFLELLVDGDVANNQLNWQWVAGTGTDTRPH-RVLNPTTQARRFD 399

Query: 420 PQGTFIRHWLPELNNVPTQYIHAP 443
           P G ++R W+PEL  +  + +H P
Sbjct: 400 PGGAYVRRWVPELAGLAGRSVHEP 423


>gi|254821492|ref|ZP_05226493.1| Phr protein [Mycobacterium intracellulare ATCC 13950]
          Length = 442

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 150/480 (31%), Positives = 221/480 (46%), Gaps = 60/480 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ D+ AL AA      +V+A F+  P      G   R+  F+  SL +++ 
Sbjct: 4   LLWFRRDLRLRDHPALLAAAEAH--EVLACFVLDPRLESSSG--QRRLQFLGDSLRRLRA 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  + +V +    +        +     +   T +  +  +     RRD+ +   L   
Sbjct: 60  DLDGRLLVTRGRPDTQ-------IPHIAKEIGATSVHISEDFAPFGTRRDERVRAALGA- 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V   +     L+ PG +       Y+V+TPF       L Q        PA         
Sbjct: 112 VPLVATGSPYLVSPGRVTKPDGSPYQVFTPF-------LRQWHKVGWRAPATSGAASAHW 164

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHIL----RKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  R      +  DP  P+             + F    +  Y + R+ P ++GTS++S
Sbjct: 165 LDPARLRVGHCEIPDPGVPLDVAAGEAAARAQWKSFLDNGLRSYADDRNRPDLRGTSRMS 224

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR           DL ++   GA ++L EL +R+FY  ++  +P+      
Sbjct: 225 AHLKFGTVHPRTL-------AADLDLR-GGGAQAYLRELAFRDFYADVLHHWPASA---- 272

Query: 307 FIPWTEKIEWNKD------------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              W     WNKD                 AWK G TGFP +DA MRQL   G+MHNR+R
Sbjct: 273 ---WRN---WNKDFDGIPTDSGAEAERRFAAWKAGETGFPFVDAGMRQLRETGFMHNRVR 326

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M  ASFLVKDL + W+ G E+F+ QL+DGD+A+N  GWQW A  G D+ PYFR+F+PT Q
Sbjct: 327 MSVASFLVKDLHLPWQWGAEWFLDQLVDGDMANNQHGWQWCAGCGTDAAPYFRVFDPTTQ 386

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           G++FDP G +IR W+PEL +     +H     L +     NYP PIVDH       L +Y
Sbjct: 387 GEKFDPTGDYIRRWVPELRSA--DDVH-----LRRGRRPDNYPQPIVDHAAERAEALRRY 439


>gi|315605497|ref|ZP_07880534.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315312764|gb|EFU60844.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 475

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/443 (30%), Positives = 215/443 (48%), Gaps = 32/443 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI----ATPEQWRQHG---ISARQSHFIYA 63
           L+WLR+DLR+ D+ AL AAC  +   V+A++I     T E   +HG   + A    + + 
Sbjct: 4   LIWLRDDLRLADHPALTAACTGAHGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWYHR 63

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL Q+   L+  GI   + +     D+   +       + T + + R+Y     R D  +
Sbjct: 64  SLQQLAPRLADLGIPLIFARG----DAARIMRRVVDTLQPTFVHWTRRYAPAACRLDAAI 119

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----------LVQA 172
           ++ L+ R    S   S+L  P  +   +   Y+V+TPF  A+              + + 
Sbjct: 120 KQELKSRTEVHSHPGSLLAEPWLMRTASGSHYQVFTPFSHAVADLPLTPLLPEPSPVDEP 179

Query: 173 DLRSLPVPAIRLTGPV-TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY-- 229
           D  +  +  +R  G +    +I    D P    D +    E   L   ++      +   
Sbjct: 180 DGAATDLATLREDGVLHNLEDIGLLDDGPDWWEDTLAQHWEPGELAARQQLDAIDGWLPG 239

Query: 230 YVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y ++RD+P  +  TS++SP L  G LSPRQ     +               +W  +L WR
Sbjct: 240 YAKRRDLPGEETSTSRISPRLRCGELSPRQALAAARSS-----TAAGEDIAAWTRQLYWR 294

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF  HL+  +       P  P  E+  ++ D HL++AW+QG TG  ++D  M QL   GW
Sbjct: 295 EFCWHLL-HHREHLEDTPMRPAFEEFPYHPDDHLVRAWRQGRTGIDLVDGGMWQLWQTGW 353

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RM+ AS   K++L  W+ GE++F   L+D D A+N   WQW A +G D+ PYFRI
Sbjct: 354 MHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGSGADAAPYFRI 413

Query: 409 FNPTIQGKRFDPQGTFIRHWLPE 431
           FNP +Q  RFDP  ++++ W+PE
Sbjct: 414 FNPELQRTRFDPHSSYVKRWIPE 436


>gi|145294801|ref|YP_001137622.1| hypothetical protein cgR_0748 [Corynebacterium glutamicum R]
 gi|140844721|dbj|BAF53720.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 482

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 165/503 (32%), Positives = 236/503 (46%), Gaps = 79/503 (15%)

Query: 11  LVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           L+W R+DLR++DN AL +AA H     VI +FI   ++     I A    +   SL  + 
Sbjct: 24  LLWFRDDLRLSDNAALKWAADH---GPVIGLFI---DETINRSIGAAARWWREQSLNALA 77

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + LS  G+           + +E L     +  V  + +NR+Y       D  L+K L+ 
Sbjct: 78  QDLSFYGVPL----LRRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNLRD 133

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIRL 184
           + I   S    +L  P  +       YKV+TPF KA  +    +  +    ++ VP+  L
Sbjct: 134 QGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPS-HL 192

Query: 185 TGPVTPS-NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           TGP      IP   + PF A   +    P GE+NA   L  F  E +  Y + RD  A  
Sbjct: 193 TGPEGVELPIPEM-EQPFWATTLVKECAP-GEKNASEKLFDFL-EHLQDYPQARDSLARS 249

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LS +L  G +S  + W        +       G   +L EL+WR+F  H +   P 
Sbjct: 250 ATSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYALPH 302

Query: 301 V-------------------------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           +                             P IP T+  ++++D   L AW+ G TG P+
Sbjct: 303 MDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIP-TKADQFHED---LAAWRAGKTGIPL 358

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DA MR+L   G MHNR+RM+ ASFL K+L + WR GEE+F   L+D D ASN   WQWA
Sbjct: 359 VDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWA 418

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN 455
           A +G+D+ PYFRIFNP  Q K+FDP  T+IR W+PE                     + +
Sbjct: 419 AGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPS 459

Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478
           YP PIVD K++    L+ Y A K
Sbjct: 460 YPDPIVDLKESRQIALDAYSAIK 482


>gi|14517649|gb|AAK64295.1|AF159509_2 DNA-photolyase [[Brevibacterium] flavum]
          Length = 482

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 165/503 (32%), Positives = 236/503 (46%), Gaps = 79/503 (15%)

Query: 11  LVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           L+W R+DLR++DN AL +AA H     VI +FI   ++     I A    +   SL  + 
Sbjct: 24  LLWFRDDLRLSDNAALKWAADH---GPVIGLFI---DETINRSIGAAARWWREQSLNALA 77

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + LS  G+           + +E L     +  V  + +NR+Y       D  L+K L+ 
Sbjct: 78  QDLSFYGVPL----LRRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNLRD 133

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPAIRL 184
           + I   S    +L  P  +       YKV+TPF KA  +    +  +    ++ VP+  L
Sbjct: 134 QGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPS-HL 192

Query: 185 TGPVTPS-NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           TGP      IP   + PF A   +    P GE+NA   L  F  E +  Y + RD  A  
Sbjct: 193 TGPEGVELPIPEM-EQPFWATTLVKECAP-GEKNASEKLFDFL-EHLQDYPQARDSLARS 249

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LS +L  G +S  + W        +       G   +L EL+WR+F  H +   P 
Sbjct: 250 ATSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYALPH 302

Query: 301 V-------------------------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           +                             P IP T+  ++++D   L AW+ G TG P+
Sbjct: 303 MDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIP-TKADQFHED---LAAWRAGKTGIPL 358

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DA MR+L   G MHNR+RM+ ASFL K+L + WR GEE+F   L+D D ASN   WQWA
Sbjct: 359 VDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWA 418

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN 455
           A +G+D+ PYFRIFNP  Q K+FDP  T+IR W+PE                     + +
Sbjct: 419 AGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPS 459

Query: 456 YPLPIVDHKKACHHTLNQYYAAK 478
           YP PIVD K++    L+ Y A K
Sbjct: 460 YPDPIVDLKESRQIALDAYSAIK 482


>gi|330684348|gb|EGG96079.1| putative deoxyribodipyrimidine photo-lyase [Staphylococcus
           epidermidis VCU121]
          Length = 456

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/328 (36%), Positives = 170/328 (51%), Gaps = 18/328 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
             P    N+  + YKV+T F K     +++       +  I   G    +        P 
Sbjct: 129 FSPRKTFNNQGEPYKVFTSFYKKWRPYVIERHRAHYELSDISKIGEPAYA--------PT 180

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
           Q  D    + E+      + F    +  Y   R+      TSQLS  L+ G++   Q +N
Sbjct: 181 QINDSHSGLTEKEVQQQWQSFLNNDIQNYESNREYLPEVLTSQLSIALAYGLIDILQVFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L   +       +S   +++ ELI+REFY  LM  YP     + F      IEW  D  
Sbjct: 241 DLLHGYE----SNESNYEAFIRELIFREFYYVLMTQYPETAH-QSFKEKYRNIEWVNDKQ 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
               WK G TG+PI+DAAM++LN  G+MHNR+RM+T+ FL KDLL+DW  GE YF  +L+
Sbjct: 296 QFDQWKNGKTGYPIVDAAMQELNQTGYMHNRMRMVTSQFLTKDLLIDWTWGETYFKDKLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP   +I+ WL  LN+V +  +H
Sbjct: 356 DYDNASNVHGWQWSASTGTDAVPYFRMFNPIKQSERFDPNALYIKQWLSTLNHVDSHLLH 415

Query: 442 --APHSWLDKN---DLSLNYPLPIVDHK 464
               H  L K     L ++YP P+V+H+
Sbjct: 416 DTQKHMQLLKQQGIQLGVDYPEPMVNHQ 443


>gi|29467479|dbj|BAC67178.1| cryptochrome 2 [Armoracia rusticana]
          Length = 617

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 159/492 (32%), Positives = 237/492 (48%), Gaps = 58/492 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAHQ--GSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+ ++ VR   + EK ++
Sbjct: 66  SLKALGSELTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  I     + +  ++ + K  +   +++ +   P   I +T  V
Sbjct: 122 LGISVQSFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMSIESVMLPPPWRLIPITAAV 181

Query: 189 TPS--------NIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                       +    + P  A+    +  G  NA  IL +F  +++ YY +  +    
Sbjct: 182 EAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKNSNKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    EE  DL +K           +
Sbjct: 242 NATSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKG----------I 291

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  
Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLP 405

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP IQG +FDP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 406 DGHELDRLDNPAIQGAKFDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465

Query: 455 NYPLPIVDHKKA 466
           NY  PIVD   A
Sbjct: 466 NYVKPIVDIDTA 477


>gi|117164673|emb|CAJ88219.1| putative deoxyribodipyrimidine photolyase [Streptomyces ambofaciens
           ATCC 23877]
          Length = 457

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 227/467 (48%), Gaps = 36/467 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V    DLR+ D+  L AA   +D +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MSVAVVLFTADLRLHDHPPLRAALRAAD-EVVPLFVLDPGIHAAGFDAPNRRAFLADCLH 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC------LQQRVTKLFYNRQYEINEVRRD 120
            +  SL ++       +       +  + + C      L   VT   ++R+  + E    
Sbjct: 60  DLDASLRRRAGRLVV-RSGPVVRVVREVVAECGAGEVHLAAGVTAYAHHREERLREGLGG 118

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQ--ADLRSL 177
             +       V       + ++ PG++       + V+TP FR+   ++L +     R++
Sbjct: 119 SGVALHAHETV-------TTVVAPGAVTPAGSDHFAVFTPYFRRWARESLREPFGAPRTV 171

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-LRKFCKEKVYYYVEQRDI 236
            VP     GP     +P   + P     P  P G + A       + +  +  Y ++ D 
Sbjct: 172 RVPDGVRGGP-----LPDRAEVP--GTSPGLPDGGETAGRDRFSLWSRAGMSAYEDRHDD 224

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            A   TS+LSPYL  G LS  +  +R +        +   GA +++ +L WR+F+  ++A
Sbjct: 225 LAGDATSRLSPYLHFGALSAVELVHRARR-------RGGPGAEAFVRQLCWRDFHHQVLA 277

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             P     + +    +     KD+   + AW++G TG+P++DAAMRQL   GWMHNR R+
Sbjct: 278 ARPKASA-EDYRTRHDHWRGEKDAAADISAWREGRTGYPVVDAAMRQLRHEGWMHNRARL 336

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL K L VDWRIG  +F+  L+DGD+ +N   WQW A TG D+ P+ R+ NP +QG
Sbjct: 337 LVASFLTKTLYVDWRIGARHFLDLLVDGDIVNNQLNWQWVAGTGTDTRPH-RVLNPVVQG 395

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           +RFDP G ++  W+PEL +V  + +H P    +    +L+YP P++D
Sbjct: 396 RRFDPDGAYVHRWVPELRDVDGKRVHEPWRLPEDQRAALDYPAPLID 442


>gi|294811681|ref|ZP_06770324.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440135|ref|ZP_08214869.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC
           27064]
 gi|294324280|gb|EFG05923.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC
           27064]
          Length = 453

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 137/461 (29%), Positives = 216/461 (46%), Gaps = 28/461 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V ++   +DLR+ D  AL AA   +D +V+ +F+      R    +  +  F+  SL 
Sbjct: 1   MTVSVILFTSDLRVHDQPALAAAVREAD-EVVPLFVLDRGVRRSGFDAPNRLAFLADSLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L ++G            D  E +     +     +           RR+  L   
Sbjct: 60  ALDEELRERGGRLVLRTG----DVAEQVGRVVTETGARTVHLAAGVSAYARRREDRLRAG 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTP-FRK--ALIQNLVQADLRSLPVPA 181
           L          + V+  +PPG++       + V+TP FR+   +    V A  RSL VP 
Sbjct: 116 LSGLRCGLRVHEGVITVVPPGAVTPANRDHFAVFTPYFRRWAEVAPRRVLAAPRSLTVPE 175

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +    P  P  +PR       A         +    + R   ++   Y     D+P    
Sbjct: 176 L----PGHP--LPRRRSVTGTAPALARGGEREGRERLRRWLARDLDGYAEHHDDLPG-DA 228

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G LS  +   R +        +   GA +++ +L WR+F+  ++A  P  
Sbjct: 229 TSRLSPHLHFGTLSAAELVQRARG-------RGGPGAQAFVRQLAWRDFHHQVLAARPDA 281

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                + P  ++  W  D   + AWK+G TG P++DA MRQL   GWMHNR R++TAS+L
Sbjct: 282 AHAD-YRPRGDR--WRGDEREIAAWKEGRTGCPVVDAGMRQLRHEGWMHNRARLLTASYL 338

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L  DWR+G  +F+  L+DGD+A N   WQW A TG D+ P  R+ +P  Q +RFDP 
Sbjct: 339 TKTLYTDWRVGARHFLELLVDGDIADNQLNWQWVAGTGTDTRP-GRVLSPLAQARRFDPH 397

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           G ++R W+PEL ++  + IH+P +        L YP P++D
Sbjct: 398 GAYVRRWVPELADLGDREIHSPETLDPARRARLGYPDPLID 438


>gi|255261881|ref|ZP_05341223.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
 gi|255104216|gb|EET46890.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
          Length = 473

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 149/480 (31%), Positives = 220/480 (45%), Gaps = 35/480 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ D+ AL AA       ++ +FI         G  A     +  S+  + +
Sbjct: 8   ILWFRRDLRLGDHPALAAAVATG-RPIVPLFIHDEVV---EGQGAAPKMRLGFSVEALDR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +    D     L     +     ++++R Y+     RD  ++  L+  
Sbjct: 64  SLHGTGSRLVLRRGRALDV----LRKVITETGAGAVYWSRLYDPLSKERDTAVKSALKDD 119

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V  +SF   +L  P ++       YKV+TP  KA+    +     S P P  RL  P  
Sbjct: 120 GVTAQSFAGHLLFEPWTVETKTGGFYKVFTPMWKAVRGTDLPV---STPAPN-RLEAPQE 175

Query: 190 PSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                   D+   A        +     +GEQ AL  L  F  E+V  Y   RD+P + G
Sbjct: 176 WPASDALADWAMDAAMMRGRDVLAAFCTVGEQAALSRLETFINERVGNYQTNRDLPRVDG 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LS  L+ G ++P  CW+         L    + A  +L EL+WREF  HL+   P +
Sbjct: 236 TSRLSENLTYGEIAPLTCWH----AGWAALNHGDADAEVFLKELVWREFAYHLVHHTPHI 291

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                   W +   WN D    +A  WKQG TG   +DAAMR++   G MHNR RMI AS
Sbjct: 292 TTDNWKPDW-DGFAWNTDETDPKAVAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMIVAS 350

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           +L K L+  W+IG ++F   L+D D ASN  GWQW++ +G D+ PYFR+FNP  Q  +FD
Sbjct: 351 YLTKHLMCHWKIGLKWFEDCLVDWDPASNAMGWQWSSGSGPDATPYFRVFNPVTQLDKFD 410

Query: 420 PQGTFIRHWLPELNNVP----TQYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
               ++  W+ E  + P     +Y  A P  W  K   + +YP P+V  +      L+ Y
Sbjct: 411 KNREYVDRWIAEGRSQPHADALRYFDAVPEHWAIKP--TDDYPAPVVSAEDGRKAALDAY 468


>gi|302517648|ref|ZP_07269990.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
 gi|302426543|gb|EFK98358.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
          Length = 455

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 134/466 (28%), Positives = 224/466 (48%), Gaps = 36/466 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +A ++ F+   L 
Sbjct: 1   MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-----DK 121
            +   L ++G      +  +    +  L      +RV        Y  N   R     + 
Sbjct: 60  DLDAGLRERGGRLVV-RAGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAALEG 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLP 178
              + ++H  +  +      LPPG ++  +   + V+TP+ +      ++  L   R L 
Sbjct: 119 TGAELVEHEAVITA------LPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAPRKLS 172

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP 237
           VP+      V    +PR  D   + I P     GE+     L  + ++ +  Y +  D  
Sbjct: 173 VPS-----KVRSDGVPRRED--VEGISPGLARGGEREGRAKLASWRRDGISRYEDLHDDL 225

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A  GTS+LSPYL  G LS  +C +R +               +++ +L WR+F+  ++A 
Sbjct: 226 AGDGTSRLSPYLHFGALSAAECVHRARAAGGAGAD-------AFVRQLCWRDFHHQVLAA 278

Query: 298 YPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            P+    + + P  +      D+ H   AW++G TG+P++DAAMRQL   GWMHNR R++
Sbjct: 279 RPAAAH-EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLL 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K L +DWR+G  +F+  L+DGDL +N   WQW A TG D+ P  R+ NP  Q +
Sbjct: 338 AASFLTKTLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQAR 396

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           ++D +G ++R W+PEL  +  + +H P  W    +    YP P+VD
Sbjct: 397 KYDSEGDYVRQWVPELRGIEGRAVHEP--WKRPREEREGYPEPLVD 440


>gi|3551217|dbj|BAA32807.1| blue-light photoreceptor [Adiantum capillus-veneris]
 gi|3551223|dbj|BAA32810.1| blue-light photoreceptor [Adiantum capillus-veneris]
          Length = 637

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 153/497 (30%), Positives = 238/497 (47%), Gaps = 43/497 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +VW R DLR+ DN AL AA       V+ +FI TPE+  Q         ++  SL+
Sbjct: 1   MACTIVWFRRDLRVEDNPALVAAVRA--GTVVPLFIWTPEEEGQFLPGRVSRWWLKQSLI 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125
           Q+ +SL+  G      +  +   +I  L     Q   T++F+N  Y+ ++ VR  K+ ++
Sbjct: 59  QLHQSLTSLGSPLIMRRAQS---AISVLSQIIKQTGATQVFFNHLYDPVSLVRDHKVKQE 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------ 179
            LQ  V   +F+  +L  P  I +   + +  +  F    +   ++ +   LP       
Sbjct: 116 LLQAGVTVTTFNADLLYEPWEINDEQGRPFTTFAGFWSLCMDMAIEPEAPLLPPKRITKW 175

Query: 180 PAIRLTGPVTPSNIPRFF-----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           P I  T P+    +         D   +A  P    G  NA   L  F    +  Y   R
Sbjct: 176 PGIAATSPIEDLELENESEKGSNDLLARAWAP----GWANADRALEAFVSGPLMEYASNR 231

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREF 290
                  TS LSP+L  G LS R+ ++ ++ + V  + +  + A      +L  +  RE+
Sbjct: 232 QKVDSATTSLLSPHLHYGELSVRKVFHSVRMKQVLWVKEGNADAEESVNLFLRSIGLREY 291

Query: 291 YRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            R+L   +P     S+     F PW        D    + W+QG TG+P++DA MR+L  
Sbjct: 292 SRYLCFNFPFTHERSLLSNLKFFPW------RNDEGYFKVWRQGRTGYPLVDAGMRELWA 345

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GW+HNR+R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D    
Sbjct: 346 TGWLHNRIRVIVSSFFVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHEL 405

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLP 459
           +RI NP ++G R+DP G ++R WLPEL+ +P+++IH    AP + L    + L  NYP P
Sbjct: 406 YRIDNPQLEGYRYDPCGEYVRRWLPELSRLPSEWIHHPWDAPPNVLRAAGIELGSNYPRP 465

Query: 460 IVDHKKACHHTLNQYYA 476
           IV+   A    L Q  A
Sbjct: 466 IVE-VAAARERLEQALA 481


>gi|55978285|ref|YP_145341.1| DNA photolyase [Thermus thermophilus HB8]
 gi|47606704|sp|P61497|PHR_THET8 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|17942830|pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus
           Thermophilus
 gi|21465636|pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex
 gi|146386554|pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore
 gi|146386555|pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna
           Chromophore
 gi|146386556|pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore
 gi|15080709|dbj|BAB61864.2| DNA photolyase [Thermus thermophilus]
 gi|55773458|dbj|BAD71898.1| DNA photolyase [Thermus thermophilus HB8]
          Length = 420

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 141/432 (32%), Positives = 206/432 (47%), Gaps = 49/432 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R DLR+ D+ AL  A   +   V+ + +  P   +    + R+  +   ++ 
Sbjct: 1   MGPLLVWHRGDLRLHDHPALLEAL--ARGPVVGLVVLDPNNLK---TTPRRRAWFLENVR 55

Query: 67  QVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            ++++   +G    V +        ++   L +  +    +   Y R Y    VR    +
Sbjct: 56  ALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPYGR-YRDGRVREALPV 114

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
              L                         + Y+VYTPF +     L +     LP P   
Sbjct: 115 PLHLLPAPHLLP-------------PDLPRAYRVYTPFSR-----LYRGAAPPLPPPEAL 156

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             GP     IPR         DP  P+   GE+ AL  LR F + K+  Y E+RD    +
Sbjct: 157 PKGPEE-GEIPR--------EDPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGE 207

Query: 241 GTSQLSPYLSIGVLSPR-QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           G S+LSPY ++GVLSPR   W   +        +   GA  W+ EL+WR+F  HL+  +P
Sbjct: 208 GGSRLSPYFALGVLSPRLAAWEAER--------RGGEGARKWVAELLWRDFSYHLLYHFP 259

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   +P  P  +   W +D  L QAW +G TG P++DAAMR+L+  G++ NR RM  A 
Sbjct: 260 WMAE-RPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQ 318

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK LL+ W+  EE F   LLDGD A N  GWQWA   G D+ PYFR+FNP +QG+R D
Sbjct: 319 FAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHD 378

Query: 420 PQGTFIRHWLPE 431
           P+G +++ W PE
Sbjct: 379 PEGRWLKRWAPE 390


>gi|57866289|ref|YP_187945.1| deoxyribodipyrimidine photolyase [Staphylococcus epidermidis RP62A]
 gi|251810120|ref|ZP_04824593.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875733|ref|ZP_06284604.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis
           SK135]
 gi|293368145|ref|ZP_06614776.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57636947|gb|AAW53735.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus
           epidermidis RP62A]
 gi|251806348|gb|EES59005.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295760|gb|EFA88283.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis
           SK135]
 gi|291317717|gb|EFE58132.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329723282|gb|EGG59812.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis
           VCU144]
 gi|329735614|gb|EGG71898.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus
           epidermidis VCU045]
          Length = 457

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 104/274 (37%), Positives = 162/274 (59%), Gaps = 10/274 (3%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           + I E++  +   +F  + +  Y E R+      TSQLS YL+ G++   Q +N L + +
Sbjct: 187 YGISERDVQNRWSEFLSQDIENYKENREYLPEVLTSQLSIYLAYGMIDIIQVFNDLLQNY 246

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                K +    +++ ELI+REFY  LM  YP       F    ++++W+ +    + WK
Sbjct: 247 D----KNEQNYETFIRELIFREFYYVLMTNYPETA-HVAFKEKYQQLKWSYNEENFKLWK 301

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TGFPIIDAAM +L T G+MHNR+RM+ + FL KDL +DW  GE +F  +L+D D AS
Sbjct: 302 DGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTKDLFIDWIWGESFFKQKLIDYDAAS 361

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N  GWQW+ASTG D+VPYFR+FNP  Q +RFD    +I+ ++P LN V  +Y+H  H + 
Sbjct: 362 NVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNARYIKTYIPRLNQVDAKYLHDTHKFE 421

Query: 448 DK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
            +      ++  +YP  ++DHK++    ++++ A
Sbjct: 422 QQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKA 455


>gi|227553399|ref|ZP_03983448.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis
           HH22]
 gi|227177482|gb|EEI58454.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis
           HH22]
          Length = 208

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 103/201 (51%), Positives = 131/201 (65%), Gaps = 13/201 (6%)

Query: 288 REFYRHLMAFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           R+FY  + + +P      + + F      I+W  D  +   W++G TG+PIIDAAMRQLN
Sbjct: 1   RDFYNMIYSAFPQQKEEAIQEKF----RYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLN 56

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             GWMHNRLRMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VP
Sbjct: 57  QTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVP 116

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458
           YFRIFNP IQ K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP 
Sbjct: 117 YFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPK 176

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
           PIVD+  +   TL  Y A+K+
Sbjct: 177 PIVDYASSKKQTLFLYEASKE 197


>gi|291296619|ref|YP_003508017.1| Deoxyribodipyrimidine photo-lyase [Meiothermus ruber DSM 1279]
 gi|290471578|gb|ADD28997.1| Deoxyribodipyrimidine photo-lyase [Meiothermus ruber DSM 1279]
          Length = 433

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 141/429 (32%), Positives = 211/429 (49%), Gaps = 34/429 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVW R DLR+ DN AL  A     A  + V      Q      + R+  + Y +   +
Sbjct: 1   MNLVWHRADLRLHDNPALAEALRTGPAVGLVVLDPNILQ----NTTPRRRAWFYQNTQAL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++ + +G +        +    E L     +  V ++F  R        RD+ + + L 
Sbjct: 57  REAYAARGGLLLVRSGLPW----EVLPRVAAELGVQRVFAVRNSTPYARFRDQKVGEALP 112

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            R+  +      +  PG+I+      Y V+TP+ K            + P P + L  P 
Sbjct: 113 GRL--RWLPGQYIHEPGTIVKPDGGGYTVFTPYSKRWW---------AAPEPVL-LEAPA 160

Query: 189 --TPSNIPRFFD---YPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              P ++P  +D    P +A D P+ P GE  AL  L  F ++K+ +Y + RD  A +G 
Sbjct: 161 HFPPFSLPPDYDPGAIPQEASDVPLPPAGEAAALKALEVFLRDKLPHYHQTRDGLAGEGV 220

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS Y ++GVLSPR    +        L     GA  W+NEL WR+F   L+   P + 
Sbjct: 221 SRLSYYFTLGVLSPRLAARKA-------LQVGGEGARKWVNELCWRDFSGDLLYHRPQM- 272

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           M + F P  E + WN DS + +AW  G TG P++DA MR+L   G++ NR RM+ A F V
Sbjct: 273 MTQAFDPRWEGLPWNHDSEVFEAWLHGQTGIPVVDACMRELQATGFLSNRGRMVVAQFAV 332

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K  L+ W+  E  F + LLDGD ASN  GW WA   G D+ PYFR+FN   Q +  DPQG
Sbjct: 333 KLALLPWQKCERAFRNLLLDGDNASNLQGWHWAGGLGVDAAPYFRVFNLITQAETHDPQG 392

Query: 423 TFIRHWLPE 431
            +++ W+PE
Sbjct: 393 LWLKRWVPE 401


>gi|167903517|ref|ZP_02490722.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei NCTC
           13177]
          Length = 302

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +  
Sbjct: 30  FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 89

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                ++    +L+EL WREF    +  +P +   +      + + W  D   L AW++G
Sbjct: 90  GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 147

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN 
Sbjct: 148 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 207

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
             WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W   
Sbjct: 208 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 265

Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
                     L   YPLPIV H  A    L+ + A +
Sbjct: 266 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 302


>gi|167825044|ref|ZP_02456515.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 9]
          Length = 279

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +  
Sbjct: 7   FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 66

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                ++    +L+EL WREF    +  +P +   +      + + W  D   L AW++G
Sbjct: 67  GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 124

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN 
Sbjct: 125 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 184

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
             WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W   
Sbjct: 185 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 242

Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
                     L   YPLPIV H  A    L+ + A +
Sbjct: 243 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 279


>gi|242242053|ref|ZP_04796498.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           W23144]
 gi|242234492|gb|EES36804.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           W23144]
          Length = 457

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 103/274 (37%), Positives = 163/274 (59%), Gaps = 10/274 (3%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           + I E++  +   +F  + +  Y E R+      TSQLS YL+ G++   Q +N L + +
Sbjct: 187 YGISERDVQNRWSEFLSQDIENYKENREYLPEVLTSQLSIYLAYGMIDIIQVFNDLLQNY 246

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                K +    +++ ELI+REFY  LM  YP       F    ++++W+ +    + WK
Sbjct: 247 D----KNEQNYEAFIRELIFREFYYVLMTNYPETAHV-AFKEKYQQLKWSYNEENFKLWK 301

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TGFPIIDAAM +L T G+MHNR+RM+ + FL KDL +DW  GE +F  +L+D D AS
Sbjct: 302 DGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTKDLFIDWIWGESFFKQKLIDYDAAS 361

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N  GWQW+ASTG D+VPYFR+FNP  Q +RFD    +I+ ++P+LN +  +Y+H  H + 
Sbjct: 362 NVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNARYIKTYIPKLNQIDAKYLHDTHKFE 421

Query: 448 DK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
            +      ++  +YP  ++DHK++    ++++ A
Sbjct: 422 QQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKA 455


>gi|167739436|ref|ZP_02412210.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 14]
          Length = 280

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +  
Sbjct: 8   FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 67

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                ++    +L+EL WREF    +  +P +   +      + + W  D   L AW++G
Sbjct: 68  GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 125

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN 
Sbjct: 126 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 185

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
             WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W   
Sbjct: 186 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 243

Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
                     L   YPLPIV H  A    L+ + A +
Sbjct: 244 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 280


>gi|167720442|ref|ZP_02403678.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei DM98]
          Length = 272

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 114/276 (41%), Positives = 152/276 (55%), Gaps = 12/276 (4%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +   
Sbjct: 1   GEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHG 60

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
               ++    +L+EL WREF    +  +P +   +      + + W  D   L AW++G 
Sbjct: 61  AAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGA 118

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN  
Sbjct: 119 TGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAA 178

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
            WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W    
Sbjct: 179 NWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAPG 236

Query: 451 D--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
                    L   YPLPIV H  A    L+ + A +
Sbjct: 237 AQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 272


>gi|167846551|ref|ZP_02472059.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei B7210]
          Length = 289

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +  
Sbjct: 17  FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 76

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                ++    +L+EL WREF    +  +P +   +      + + W  D   L AW++G
Sbjct: 77  GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 134

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN 
Sbjct: 135 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 194

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
             WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W   
Sbjct: 195 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 252

Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
                     L   YPLPIV H  A    L+ + A +
Sbjct: 253 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 289


>gi|167919769|ref|ZP_02506860.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BCC215]
          Length = 299

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +  
Sbjct: 27  FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 86

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                ++    +L+EL WREF    +  +P +   +      + + W  D   L AW++G
Sbjct: 87  GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 144

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN 
Sbjct: 145 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 204

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
             WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W   
Sbjct: 205 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 262

Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
                     L   YPLPIV H  A    L+ + A +
Sbjct: 263 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 299


>gi|319401235|gb|EFV89450.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           FRI909]
          Length = 457

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 103/274 (37%), Positives = 163/274 (59%), Gaps = 10/274 (3%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           + I E++  +   +F  + +  Y E R+      TSQLS YL+ G++   Q +N L + +
Sbjct: 187 YGISERDVQNRWSEFLSQDIENYKENREYLPEVLTSQLSIYLAYGMIDIIQVFNDLLQNY 246

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                K +    +++ ELI+REFY  LM  YP       F    ++++W+ +    + WK
Sbjct: 247 D----KNEQNYEAFIRELIFREFYYVLMTNYPETAHV-AFKEKYQQLKWSYNEENFKLWK 301

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TGFPIIDAAM +L T G+MHNR+RM+ + FL KDL +DW  GE +F  +L+D D AS
Sbjct: 302 DGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTKDLFIDWIWGESFFKQKLIDYDAAS 361

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N  GWQW+ASTG D+VPYFR+FNP  Q +RFD    +I+ ++P+LN +  +Y+H  H + 
Sbjct: 362 NVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNARYIKTYIPKLNQIDAKYLHDTHKFE 421

Query: 448 DK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
            +      ++  +YP  ++DHK++    ++++ A
Sbjct: 422 QQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKA 455


>gi|167911767|ref|ZP_02498858.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 112]
          Length = 288

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +  
Sbjct: 16  FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 75

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                ++    +L+EL WREF    +  +P +   +      + + W  D   L AW++G
Sbjct: 76  GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 133

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN 
Sbjct: 134 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 193

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
             WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W   
Sbjct: 194 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 251

Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
                     L   YPLPIV H  A    L+ + A +
Sbjct: 252 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 288


>gi|167816639|ref|ZP_02448319.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 91]
          Length = 291

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +  
Sbjct: 19  FGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 78

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                ++    +L+EL WREF    +  +P +   +      + + W  D   L AW++G
Sbjct: 79  GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 136

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN 
Sbjct: 137 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 196

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
             WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W   
Sbjct: 197 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 254

Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
                     L   YPLPIV H  A    L+ + A +
Sbjct: 255 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 291


>gi|154508252|ref|ZP_02043894.1| hypothetical protein ACTODO_00748 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797886|gb|EDN80306.1| hypothetical protein ACTODO_00748 [Actinomyces odontolyticus ATCC
           17982]
          Length = 475

 Score =  202 bits (514), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 143/448 (31%), Positives = 215/448 (47%), Gaps = 42/448 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI----ATPEQWRQHG---ISARQSHFIYA 63
           L+WLR+DLR+ D+ AL AAC  +D  V+A++I     T E   +HG   + A    + + 
Sbjct: 4   LIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWYHR 63

Query: 64  SLLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           SL Q+   L+  GI  VF     +N    +  +D+     + T + + R+Y     R D 
Sbjct: 64  SLQQLAPRLADLGIPLVFARGDAANVMRQV--VDAL----QPTVVHWTRRYAPAACRLDA 117

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----------LV 170
            +++ L+ R    S   S+L  P  +       Y+V+TPF  A+              + 
Sbjct: 118 AIKQELKSRTEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHAVADLPLGPLLPEPSPIG 177

Query: 171 QADLRSLPVPAIRLTGPVTP-SNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEK 226
           +       +  +R  G +    +I    + P    + +   +  GE  A   L       
Sbjct: 178 ERGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDAI-DSW 236

Query: 227 VYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLN 283
           +  Y  +RD+P  +  TS++SP L  G LSPRQ                 SG    +W  
Sbjct: 237 LPGYATRRDLPGEETSTSRISPRLRCGELSPRQA-------VAAARTSTASGEDIVAWTR 289

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +L WREF  HL+  +       P  P   +  +  D HL +AW+QG TG  ++DA MRQL
Sbjct: 290 QLYWREFSWHLL-HHREHLEDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQL 348

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNR+RM+ AS   K++L  W+ GE++F   L+D D A+N   WQW A  G D+ 
Sbjct: 349 WQTGWMHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADAA 408

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           PYFRIFNP +Q  RFDP+  ++R W+PE
Sbjct: 409 PYFRIFNPDLQRTRFDPRSRYVRRWIPE 436


>gi|322510954|gb|ADX06267.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake
           phycodnavirus 2]
          Length = 439

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 146/462 (31%), Positives = 239/462 (51%), Gaps = 40/462 (8%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-ISARQSHFIYASLLQVQKSLSQK 75
           D R  DN  L  A  + D  +I +FI TPEQ +++  +S     F+  SL +++  +   
Sbjct: 10  DYRSFDNLGLNYAMKHFD-HIIPIFIFTPEQIKKNKYLSNNSLQFLCESLEELRDHIPLH 68

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQHRVICK 134
             +F       + D+++ L        ++ + +N+ Y    + RD+ ++   ++  + C 
Sbjct: 69  --IF-------YGDNLKVLSKINKTIPISNIVFNKDYTPYAIERDQSIDSWCVKKNINCV 119

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194
             +D +L P G         Y VYTPF+  ++++ +  + ++ P+  +    P+      
Sbjct: 120 QIEDYLLSPIGRFNKTDGSPYVVYTPFKNNVLKHSI-PNTQNHPLKHLIYHKPL------ 172

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254
               Y    +D  +     N +   RK   + ++  ++  D  +I+ T+QLS Y+  G L
Sbjct: 173 EHISYYSPNLD-YYTYNPHNNVKGGRKNGLKYLHTNIDYEDQLSIK-TTQLSAYIKYGCL 230

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK-PFIPWTEK 313
           S R+ ++  K+E +               +LIWREFY ++  +YP++      F    +K
Sbjct: 231 SIREVYHHFKDENLKA-------------QLIWREFYYYINYYYPNLLKKSVAFQMKYDK 277

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
           I+W  +   L+ WK+G TGFP++DA MRQLN  G+MHNR R+I ++FL + L +DWR+GE
Sbjct: 278 IKWVNNKKHLEWWKRGETGFPVVDACMRQLNKTGYMHNRGRLIVSNFLNRLLGLDWRLGE 337

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDPQGTFIRHWLPEL 432
            YF  QL+D D   NNG WQW +S G D+ PY  R+FNP +Q KRFDP   +I+ W+PEL
Sbjct: 338 LYFAQQLIDYDPCVNNGNWQWVSSVGIDTKPYSQRVFNPWLQSKRFDPHCIYIKEWIPEL 397

Query: 433 NNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           N+VP   I   H W    D  + Y LPI+D+  A   +L  Y
Sbjct: 398 NDVPPNEI---HQWDLHGDPDI-YILPIIDYTMARERSLQMY 435


>gi|312194378|ref|YP_004014439.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
 gi|311225714|gb|ADP78569.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
          Length = 447

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/460 (30%), Positives = 209/460 (45%), Gaps = 31/460 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+   V+ R DLR+ DN  L AA    +   + +F+      R    +  +  F+  SL 
Sbjct: 1   MTTLAVFTR-DLRVHDNPMLTAAALAGE-HTVPLFVLDAAMARSGFATGARERFLAESLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + +SL + G            D +E +     +     +           RR+  L   
Sbjct: 59  DLDRSLRELGGRL----VVRAGDPVEQVCRVADEVDAGTVHLAADCSGYAQRREAALRSA 114

Query: 127 LQHRVICKSFDDS--VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L  R       D   V++ PG +       Y V+  + +        A  R +  P  RL
Sbjct: 115 LAERGRTLHCHDEAHVVVAPGRVTPAGRDHYAVFGAYHR----RWEAAGWRRVIAPPARL 170

Query: 185 TGP-VTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             P V P  +P        ++    F  GE        ++ +E V  Y E+RD  A   T
Sbjct: 171 RLPAVDPGALPPIGGPAGGESAGGGFHGGETVGRRRAEEWLREGVEVYDERRDQLAADAT 230

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG--AFSWLNELIWREFYRHLMAFYPS 300
           S+LSPYL +G LS            ++L  +  +G  A  ++ +L WR+F+  L+A  P+
Sbjct: 231 SRLSPYLHLGCLS-----------ALELATQAGTGDAARDFVRQLAWRDFFHQLLAARPA 279

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                          W  D   L AW+ G+TG PI+DA MRQL T GW+ NR RMITASF
Sbjct: 280 AAHEDYR---DAHRTWRDDPAALDAWRSGHTGIPIVDAGMRQLLTEGWLPNRARMITASF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L +DWR G  ++   LLD D+A+N+  WQW A TG D+ P  R+ NP  Q +RFDP
Sbjct: 337 LTKTLGLDWRAGAAHYTEHLLDADVANNSLNWQWVAGTGTDTRP-GRVLNPLRQAERFDP 395

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
            G ++R  +PEL  +P + +H P    D+   +L+YP P+
Sbjct: 396 DGVYVRRHVPELAGLPGRQVHRPWRLPDRERAALDYPEPL 435


>gi|261876463|dbj|BAI47557.1| cryptochrome2 [Glycine max]
          Length = 600

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 148/479 (30%), Positives = 236/479 (49%), Gaps = 24/479 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            M+  +VW R DLRI DN AL AA    D  V  V+I  P++  Q         ++  SL
Sbjct: 2   GMNKTIVWFRRDLRIEDNPALAAAAAAKDGSVFPVYIWCPKEEGQFYPGRVSRWWLKQSL 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124
             + KSL   G      +    D ++E L       + TK+ +N  Y+ ++ VR   + E
Sbjct: 62  AHLDKSLKSLGAELMLIKT---DSTLEALLECVNAIQATKVVFNHLYDPVSLVRDHNIKE 118

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           K ++  +  KS++  +L  P SI +     +  + PF    +   ++A    +P   I  
Sbjct: 119 KLVELGISVKSYNGDLLFEPWSIYDETGHAFTTFDPFWNRCLHMQMKA-FSLIPPQLILA 177

Query: 185 TGPVTPSNIPRFF--DYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            G V   +I +    D   ++ + +     +P G       L +F ++ + +Y + R   
Sbjct: 178 EGKVGKCSIEQLGLEDESEKSSNALLGRAWYP-GWNKTDKALTEFVEQHLLHYSKNRLKV 236

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG----AFSWLNELIWREFYRH 293
               TS LSPY+  G LS R+ +   + + +    +  S     A  +L  +  RE+ R+
Sbjct: 237 GGDSTSLLSPYIHFGELSVRKVFQLARTKQILWANEGNSAGEESATVFLRAIGLREYSRY 296

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +PS  + KP +       W  D    +AW+QG TG+P++DA MR+L   GW+HN++
Sbjct: 297 LCFNFPST-IEKPLLGNLAFFPWKTDPANFKAWRQGRTGYPLVDAGMRELWATGWIHNKI 355

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R+I +SF VK LL+ WR G +YF   LLD DL S+  GWQ+ +    D     R+ +P I
Sbjct: 356 RVIVSSFAVKMLLIPWRWGMKYFWDTLLDADLESDILGWQYISGCLPDGHKLERLDDPAI 415

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
            G +FDP+G ++R WLPEL  +P ++IH    AP + L  + + L  NYP PI+D  +A
Sbjct: 416 HGAKFDPEGEYVRQWLPELARMPAEWIHHPWNAPLTVLRASGVELGQNYPKPIIDIDQA 474


>gi|167895131|ref|ZP_02482533.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 7894]
          Length = 299

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/277 (41%), Positives = 152/277 (54%), Gaps = 12/277 (4%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +  
Sbjct: 27  FGEDAAHRRLRAFVDSRLGGYAVERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAH 86

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                ++    +L+EL WREF    +  +P +   +      + + W  D   L AW++G
Sbjct: 87  GAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRG 144

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN 
Sbjct: 145 ATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNA 204

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
             WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P  W   
Sbjct: 205 ANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEP--WAAP 262

Query: 450 ND--------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
                     L   YPLPIV H  A    L+ + A +
Sbjct: 263 GAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 299


>gi|329736816|gb|EGG73081.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus
           epidermidis VCU028]
          Length = 457

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/274 (37%), Positives = 161/274 (58%), Gaps = 10/274 (3%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           + I E++  +   +F  + +  Y E R+      TSQLS YL+ G++   Q +N L + +
Sbjct: 187 YGISERDVQNRWSEFLSQDIENYKENREYLPEVLTSQLSIYLAYGMIDIIQVFNDLLQNY 246

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                K +    +++ ELI+REFY  LM  YP       F    ++++W  +    + WK
Sbjct: 247 D----KNEQNYETFIRELIFREFYYVLMTNYPETA-HVAFKEKYQQLKWFYNEENFKLWK 301

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TGFPIIDAAM +L T G+MHNR+RM+ + FL KDL +DW  GE +F  +L+D D AS
Sbjct: 302 DGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTKDLFIDWIWGESFFKQKLIDYDAAS 361

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N  GWQW+ASTG D+VPYFR+FNP  Q +RFD    +I+ ++P LN V  +Y+H  H + 
Sbjct: 362 NVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNARYIKTYIPRLNQVDAKYLHDTHKFE 421

Query: 448 DK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
            +      ++  +YP  ++DHK++    ++++ A
Sbjct: 422 QQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKA 455


>gi|261876459|dbj|BAI47555.1| cryptochrome2 [Glycine max]
          Length = 642

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/486 (30%), Positives = 243/486 (50%), Gaps = 57/486 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF----IYASLL 66
           +VW R DLRI DN AL AA    +  V+ V++  P++  Q     R S +      A L 
Sbjct: 7   IVWFRRDLRIEDNPALTAAA--KEGSVLPVYVWCPKEEGQF-YPGRVSRWWLKQSLAHLD 63

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYE-INEVRRDKLLE 124
           Q  KSL  + ++ + H  +     +  ++  C++  + TK+ +N  Y+ ++ VR   + E
Sbjct: 64  QSLKSLGSRLVLIKTHSTA-----VALVE--CVKAIQATKVVFNHLYDPVSLVRDHNIKE 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AI 182
           K ++  +  +S++  +L  P  + + + + +  +  F K  +   VQ D+ S+  P   I
Sbjct: 117 KLVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLH--VQMDIVSVVPPWQLI 174

Query: 183 RLTGPVTPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              G +   ++         + P  A+    +  G +NA   LR+F +  + +Y ++R  
Sbjct: 175 PAEGKIEECSLEELGLENESEKPSNALLGRAWSPGWRNADRALREFVELHLLHYSKKRLK 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282
              + TS LSPYL  G LS R+ +              N   EE  +L ++         
Sbjct: 235 VGGESTSLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRA-------- 286

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             +  RE+ R+L   +P     +  +   +   WN D  + + W+QG TGFP++DA MR+
Sbjct: 287 --IGLREYSRYLCFNFP-FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRE 343

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW+HNR+R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ +    D 
Sbjct: 344 LWATGWIHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDG 403

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456
               R+ NP IQG +FDP+G ++R WLPEL  +PT++IH    AP + L    + L  NY
Sbjct: 404 HELERLDNPEIQGAKFDPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNY 463

Query: 457 PLPIVD 462
           P PI+D
Sbjct: 464 PKPIID 469


>gi|70606996|ref|YP_255866.1| deoxyribodipyrimidine photolyase [Sulfolobus acidocaldarius DSM
           639]
 gi|68567644|gb|AAY80573.1| deoxyribodipyrimidine photolyase [Sulfolobus acidocaldarius DSM
           639]
          Length = 430

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/477 (31%), Positives = 234/477 (49%), Gaps = 62/477 (12%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQK 70
           V  R DLR+ DN AL  A ++ + K+  +FI  P Q   +   +   + F+  SL+++ K
Sbjct: 5   VIFRRDLRLFDNTALVNAVYHCN-KIYPIFIVDPRQMINNPYKSEFAATFLINSLVELDK 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQH 129
            L+    V+ Y    N    ++ +++         +F N  Y    ++RD K+ E  L  
Sbjct: 64  ELNGNLNVY-YGYPENIVSKLDMVNA---------IFINEDYTPFAIQRDEKMKENALNK 113

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +   S+ D +L    S     +++ + +TPF             R L VP  +      
Sbjct: 114 GIKFFSYPDVLL----SAEEKKIKIGRSFTPF---------YTKARELEVPKPQSVDKSI 160

Query: 190 PSNIPRF-------FDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             N+ R        F   F+ ++ P+   G    L +L +    ++ Y   ++D PA + 
Sbjct: 161 --NVERISNSLSIDFLLTFKKVESPLLKGGRPEGLMLLDR----EIDY--SRKDYPAEKN 212

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LSP+L  G +SPR+ +++          K    AF+   +L WR+FY  L+A+    
Sbjct: 213 YSMLSPHLKFGTVSPREVYHK----------KISDQAFT--RQLYWRDFYT-LLAYQNPY 259

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G  F    +KI+W        AWK G TG+PIIDA MR LNT G+++ R+RM+ A FL
Sbjct: 260 VFGHSFKTEYDKIKWENSERYFNAWKDGMTGYPIIDAGMRALNTTGFINGRVRMLVAFFL 319

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L VDWR+GE YF ++L+D D A NNG WQW ASTG D +  FR+F+P  Q +++DP+
Sbjct: 320 TKVLFVDWRLGERYFATKLVDYDPAVNNGNWQWVASTGTDYI--FRVFDPWKQQEKYDPE 377

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
             FI+ ++ EL + P   IH    +L K      YP PIV+ ++        Y++ K
Sbjct: 378 AKFIKDYVRELRDYPPSVIH--KVYLHK---ITGYPSPIVNWRERVEMVKQVYFSTK 429


>gi|29467481|dbj|BAC67179.1| cryptochrome 2 [Armoracia rusticana]
          Length = 617

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 161/496 (32%), Positives = 241/496 (48%), Gaps = 66/496 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128
           SL   G      +  N   +I  LD  C++    TK+ ++  Y+ ++ VR   + EK ++
Sbjct: 66  SLKALGSELTLIKTHNTVSAI--LD--CIRVTGATKVVFDHLYDPVSLVRDHTVKEKLVE 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  I     + + +++ + K  +   +++ +  LP P  RL  P+
Sbjct: 122 LGISVQSFNGDLLYEPWEIYCEKGKHFTIFSSYWKKCLDMSIESVM--LP-PPWRLR-PI 177

Query: 189 TPS------------NIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           T +             +    + P  A+    +  G  NA  IL +F  +++ YY +   
Sbjct: 178 TAAADAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKNSK 237

Query: 236 IPAIQGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSW 281
                 TS LSPYL  G +S R   QC       W R K    EE  DL +K        
Sbjct: 238 KVVGNSTSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKG------- 290

Query: 282 LNELIWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
              +  RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++
Sbjct: 291 ---IGLREYSRYICFNFPFTHEQSLLSHLRFFPW------DTDVDKFKAWRQGRTGYPLV 341

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DA MR+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ +
Sbjct: 342 DAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYIS 401

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN-- 450
            +  D     R+ NP IQG  FDP+G +IR WLPEL  +PT++IH    AP + L  +  
Sbjct: 402 GSLPDGHELDRLDNPAIQGANFDPEGEYIRQWLPELVRLPTEWIHHPWDAPLTVLKASGV 461

Query: 451 DLSLNYPLPIVDHKKA 466
           +L  NY  PIVD   A
Sbjct: 462 ELGTNYAKPIVDIDTA 477


>gi|311029789|ref|ZP_07707879.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. m3-13]
          Length = 220

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/194 (50%), Positives = 123/194 (63%), Gaps = 7/194 (3%)

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           +G  +++ EL WR+FY  +  +YP     K      +K++WN +  LL  WK+G TGFPI
Sbjct: 14  TGMDTFIKELAWRDFYNMIFHYYPE-SKTKEIDDKYQKLKWNDNQDLLDLWKKGKTGFPI 72

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DA MRQL   GWMHNR+RMI ASFL KD L+DWR+GE YF   L D D ASN GGWQWA
Sbjct: 73  VDAGMRQLAEEGWMHNRIRMINASFLTKDFLMDWRLGERYFEQMLHDYDEASNIGGWQWA 132

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND---- 451
           AS G D+VPYFR+FNP  Q  RFD +G +I+ +LPEL  V  + IH P    D       
Sbjct: 133 ASVGTDAVPYFRVFNPITQSIRFDTKGEYIKKYLPELVGVSEKKIHEPWKMDDHEQEKAG 192

Query: 452 --LSLNYPLPIVDH 463
             +  +YP P+VDH
Sbjct: 193 CVIGKDYPRPVVDH 206


>gi|89069099|ref|ZP_01156472.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516]
 gi|89045272|gb|EAR51338.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516]
          Length = 478

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 145/487 (29%), Positives = 222/487 (45%), Gaps = 39/487 (8%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A    LVW+R +LR+ D+ AL  A       V+ VF+   E     G +A+    +  + 
Sbjct: 2   AAEAILVWVRRELRLGDHPALAEAAATGR-PVVPVFLCD-ETVEARGAAAQWRLGLGVAA 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
                + +   +V +    +        L +   +    +++++R +E      ++ +  
Sbjct: 60  FAEALAGAGSRLVLRRGGAAAA------LVALAREAEAGEVWWSRAHEPVAAALERDVAG 113

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    I  ++F+  VL PP S+       YKVYTPF K++    V   L     P  RL
Sbjct: 114 ALAAEGIGTRAFEGHVLFPPESVATKTGGYYKVYTPFWKSVRDRDVGTPL----PPPKRL 169

Query: 185 TGPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           T P       R   +   A        +     +GE  A   L +F +E++  Y + R+ 
Sbjct: 170 TAPGRWPESERLEAWGLGAEMRRGADVVAEHVVVGEAAAARRLERFVEERLADYPQARNR 229

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRHL 294
             ++GTS LS  L++G +S R CW         L+ +     GA ++L E+ WR+F  HL
Sbjct: 230 FDVEGTSGLSENLAVGEISARSCWQ------AGLMARDAGNPGAETFLKEVAWRDFAYHL 283

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +   P +        W     WN D    +  AW++G TG  ++DAAMR++   G MHNR
Sbjct: 284 LHHTPRLATDNWRPEWA-AFPWNTDEDAPEVVAWQRGRTGVALVDAAMREMYVTGRMHNR 342

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI  S+L K LL  WRIG+ +F + L D D A+N  GWQW A +G D+ P+FR+FNP 
Sbjct: 343 GRMIVGSYLTKHLLSHWRIGQRWFDAHLTDWDPANNALGWQWVAGSGPDASPFFRVFNPD 402

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKAC 467
            Q ++FDP G + R W+ E  + P     A     P  W    D    YP P+V   +  
Sbjct: 403 GQAEKFDPDGAYRRKWVAEGQDDPPATALAYFAAIPRKWSMSADDP--YPQPVVGLAEGR 460

Query: 468 HHTLNQY 474
              L  Y
Sbjct: 461 ARALAAY 467


>gi|323441460|gb|EGA99114.1| hypothetical protein SAO46_2584 [Staphylococcus aureus O46]
          Length = 457

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/341 (36%), Positives = 181/341 (53%), Gaps = 18/341 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
                 +N   + YKV+T F K     L   D+    + +       +P ++  F D  F
Sbjct: 129 FKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
            +      I EQN     + F +  +  Y   RD      TSQLS  L+ G+L   + +N
Sbjct: 188 GSS----QIIEQNKW---QHFLEHDIQNYESGRDYLPEVLTSQLSIALAYGLLDIIEIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L   + +     +S   +++ ELI+REFY  LM  YP     + F P    I W+++  
Sbjct: 241 DLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPESA-HQSFKPKYRHINWSENEA 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL KDL ++W  GE++F   L+
Sbjct: 296 DFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTKDLFINWTWGEDFFRKYLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  +I+ +LP LN +  +Y+H
Sbjct: 356 DYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPVLNQIDAKYLH 415

Query: 442 APH---SWLDKNDLSL--NYPLPIVDHKKACHHTLNQYYAA 477
             H   S L K  + L  +YP  IVDH++     L  + A+
Sbjct: 416 DTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAS 456


>gi|261876461|dbj|BAI47556.1| cryptochrome2 [Glycine max]
          Length = 634

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 148/486 (30%), Positives = 243/486 (50%), Gaps = 57/486 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF----IYASLL 66
           +VW R DLRI DN AL AA    +  V+ V++  P++  Q     R S +      A L 
Sbjct: 7   IVWFRRDLRIEDNPALAAAA--KEGSVLPVYVWCPKEEGQF-YPGRVSRWWLKQSLAHLD 63

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYE-INEVRRDKLLE 124
           Q  KSL  + ++ + H  +     +  ++  C++  + TK+ +N  Y+ ++ VR   + E
Sbjct: 64  QSLKSLGSRLVLIKTHSTA-----VALVE--CVKAIQATKVVFNHLYDPVSLVRDHNIKE 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AI 182
           K ++  +  +S++  +L  P  + + + + +  +  F K  +   +Q D+ S+  P   I
Sbjct: 117 KLVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLH--MQMDIVSVVPPWQLI 174

Query: 183 RLTGPVTPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              G +   ++         + P  A+    +  G +NA   LR+F +  + +Y ++R  
Sbjct: 175 PAEGKIEECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLK 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282
              + TS LSPYL  G LS R+ +              N   EE  +L ++         
Sbjct: 235 VGGESTSLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRA-------- 286

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             +  RE+ R+L   +P     +  +   +   WN D  + + W+QG TGFP++DA MR+
Sbjct: 287 --IGLREYSRYLCFNFP-FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRE 343

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW+HNR+R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ +    D 
Sbjct: 344 LWATGWIHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDG 403

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456
               R+ NP IQG +FDP+G ++R WLPEL  +PT++IH    AP + L    + L  NY
Sbjct: 404 HELERLDNPEIQGAKFDPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNY 463

Query: 457 PLPIVD 462
           P PI+D
Sbjct: 464 PKPIID 469


>gi|89199718|gb|ABD63262.1| cryptochrome 2 [Glycine max]
          Length = 634

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 148/486 (30%), Positives = 243/486 (50%), Gaps = 57/486 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF----IYASLL 66
           +VW R DLRI DN AL AA    +  V+ V++  P++  Q     R S +      A L 
Sbjct: 7   IVWFRRDLRIEDNPALTAAA--KEGSVLPVYVWCPKEEGQF-YPGRVSRWWLKQSLAHLD 63

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYE-INEVRRDKLLE 124
           Q  KSL  + ++ + H  +     +  ++  C++  + TK+ +N  Y+ ++ VR   + E
Sbjct: 64  QSLKSLGSRLVLIKTHSTA-----VALVE--CVKAIQATKVVFNHLYDPVSLVRDHNIKE 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AI 182
           K ++  +  +S++  +L  P  + + + + +  +  F K  +   +Q D+ S+  P   I
Sbjct: 117 KLVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLH--MQMDIVSVVPPWQLI 174

Query: 183 RLTGPVTPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              G +   ++         + P  A+    +  G +NA   LR+F +  + +Y ++R  
Sbjct: 175 PAEGKIEECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLK 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282
              + TS LSPYL  G LS R+ +              N   EE  +L ++         
Sbjct: 235 VGGESTSLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRA-------- 286

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             +  RE+ R+L   +P     +  +   +   WN D  + + W+QG TGFP++DA MR+
Sbjct: 287 --IGLREYSRYLCFNFP-FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRE 343

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW+HNR+R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ +    D 
Sbjct: 344 LWATGWIHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDG 403

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456
               R+ NP IQG +FDP+G ++R WLPEL  +PT++IH    AP + L    + L  NY
Sbjct: 404 HELERLDNPEIQGAKFDPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNY 463

Query: 457 PLPIVD 462
           P PI+D
Sbjct: 464 PKPIID 469


>gi|261876465|dbj|BAI47558.1| cryptochrome2 [Glycine max]
          Length = 634

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 151/486 (31%), Positives = 240/486 (49%), Gaps = 57/486 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF----IYASLL 66
           +VW R DLRI DN AL AA    +  V+ V+I  P++  Q     R S +      A L 
Sbjct: 7   IVWFRRDLRIEDNPALAAAAK--EGSVLPVYIWCPKEEGQF-YPGRVSRWWLKQSLAHLD 63

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYE-INEVRRDKLLE 124
           Q  KSL  + ++ + H  S     +E     C++  + TK+ +N  Y+ ++ VR   + E
Sbjct: 64  QSLKSLGSRLVLIKTH--STVTALVE-----CVKAIQATKVVFNHLYDPVSLVRDHNIKE 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------L 177
           K ++  +  +S++  +L  P  + + + + +  +  F K  +   +Q D+ S       +
Sbjct: 117 KLVEQGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLH--MQMDIVSVVPPWQLI 174

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           P        P+    +    + P  A+    +  G +NA   L +F ++ +  Y ++R  
Sbjct: 175 PAEGKVEECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLK 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282
                TS LSPYL  G LS R+ +              N   EE V+L ++         
Sbjct: 235 VGGDSTSLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRA-------- 286

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             +  RE+ R+L   +P     K  +   +   WN D+ + + W+QG TGFP++DA MR+
Sbjct: 287 --IGLREYSRYLCFNFP-FTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRE 343

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW+HNR+R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ +    D 
Sbjct: 344 LWATGWIHNRIRVIVSSFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDG 403

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456
               R+ NP IQG +FDP+G ++R WLPEL  +PT++IH    AP + L    + L  NY
Sbjct: 404 HEPERLDNPEIQGVKFDPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNY 463

Query: 457 PLPIVD 462
           P PI+D
Sbjct: 464 PKPIID 469


>gi|283469986|emb|CAQ49197.1| FAD binding domain of DNA photolyase protein [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 457

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 142/471 (30%), Positives = 229/471 (48%), Gaps = 29/471 (6%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
           L N +   ++  L+   +     + A +   PE+      S  ++ F   +L +  +SL 
Sbjct: 6   LLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQRFYQSLH 64

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---QHR 130
            + +        ++DD I    S+C +  ++++          +    +L +R    + R
Sbjct: 65  AEKLT---PYVMSYDDII----SFCKENNISEVVIAGDIMSYHLEEYDILHQRSLFNEAR 117

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +       +        +N   + YKV+T F K     L   D+    + +       +P
Sbjct: 118 IAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASP 177

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
            ++  F D  F +      I EQN     + F  + +  Y   RD      TSQLS  L+
Sbjct: 178 DDLV-FDDIAFGSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALA 229

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G+L   + +N L   + +     ++   +++ ELI+REFY  LM  YP     + F P 
Sbjct: 230 YGLLDIIEIFNDLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPK 284

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
             +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW 
Sbjct: 285 YRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWT 344

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  +I+ +LP
Sbjct: 345 WGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLP 404

Query: 431 ELNNVPTQYIHAPH---SWLDKNDLSL--NYPLPIVDHKKACHHTLNQYYA 476
             N +  +Y+H  H   S L K  + L  +YP  IVDH++     L  + A
Sbjct: 405 IFNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455


>gi|323438580|gb|EGA96326.1| hypothetical protein SAO11_2569 [Staphylococcus aureus O11]
          Length = 457

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/340 (36%), Positives = 180/340 (52%), Gaps = 18/340 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
                 +N   + YKV+T F K     L   D+    + +       +P ++  F D  F
Sbjct: 129 FKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
            +      I EQN     + F +  +  Y   RD      TSQLS  L+ G+L   + +N
Sbjct: 188 GSS----QIIEQNKW---QHFLEHDIQNYESGRDYLPEVLTSQLSIALAYGLLDIIEIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L   + +     +S   +++ ELI+REFY  LM  YP     + F P    I W+++  
Sbjct: 241 DLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPESA-HQSFKPKYRHINWSENEA 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL KDL ++W  GE++F   L+
Sbjct: 296 DFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTKDLFINWTWGEDFFRKYLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  +I+ +LP LN +  +Y+H
Sbjct: 356 DYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPVLNQIDAKYLH 415

Query: 442 APH---SWLDKNDLSL--NYPLPIVDHKKACHHTLNQYYA 476
             H   S L K  + L  +YP  IVDH++     L  + A
Sbjct: 416 DTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455


>gi|3551219|dbj|BAA32808.1| blue-light photoreceptor [Adiantum capillus-veneris]
 gi|3551225|dbj|BAA32811.1| blue-light photoreceptor [Adiantum capillus-veneris]
          Length = 679

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 151/489 (30%), Positives = 235/489 (48%), Gaps = 34/489 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A T ++  +VW R DLRI DN AL AA       V+ VFI +PE+  Q         +
Sbjct: 1   MAAHTIVAHTIVWFRRDLRIEDNPALVAAVRA--GPVLPVFIWSPEEEGQFLPGRVSRWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+ + +SL+  G      + SN    +  L         T++FYN  Y+   + RD
Sbjct: 59  LKQSLVHLNESLTILGAPLVMRRASNV---LAALLEIKKATGATQVFYNHLYDPVSLVRD 115

Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +++ L Q  +I  SF+  +L  P  + +   Q +  ++ F    +    + + + LP 
Sbjct: 116 HRVKQGLSQAGIIVNSFNADLLYEPWEVNDDNGQAFTTFSGFWAKCMDMPAEPEAQILPP 175

Query: 180 PAI-RLTGPVTPSNIPRFFDYPFQA------IDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             I +  GP    +I                +   +  G  NA   L  F    +  Y  
Sbjct: 176 KRILKFPGPSLSCSIEDLDLEDELEKGSNALLARAWQPGWANADRALESFINGSLMEYAA 235

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWR 288
            R       TS LSP+L  G +S R+ ++ ++ + V    +  ++ +     +L  + +R
Sbjct: 236 NRQKVDSATTSLLSPHLHYGEVSVRKIFHNVRMKQVLWVKEGRVEAEESVNLFLRSIGFR 295

Query: 289 EFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           E+ R+L   +P     S+     F PW        D    +AW+QG TG+P++DA MR+L
Sbjct: 296 EYSRYLSFNFPFTHERSLLYNLKFFPW------RVDESYFKAWRQGRTGYPLVDAGMREL 349

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GW+HN++R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D  
Sbjct: 350 WATGWLHNQIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGH 409

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457
              RI NP I+G +FDP G ++R WLPEL+ +PT++IH    AP S L    + L  NYP
Sbjct: 410 ELDRIDNPQIEGYKFDPYGEYVRRWLPELSRLPTEWIHHPWDAPPSVLRAAGIELGSNYP 469

Query: 458 LPIVDHKKA 466
            PIV+   A
Sbjct: 470 RPIVEIAAA 478


>gi|224084664|ref|XP_002307379.1| predicted protein [Populus trichocarpa]
 gi|222856828|gb|EEE94375.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 152/485 (31%), Positives = 225/485 (46%), Gaps = 46/485 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYA 63
           +     +VW R DLR+ DN AL A        V+AVF+  PE+   H    R S + +  
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEE-EGHYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122
           SL  +  SL   G      + +   DS+  L         T+L +N  Y+ ++ VR  + 
Sbjct: 59  SLAHLDSSLRSLGTSLVTKRST---DSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRA 115

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            E      +  +SF+  +L  P  + +   + +  +  F +  +      +   LP P  
Sbjct: 116 KEILTAQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLP-PKR 174

Query: 183 RLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDI 236
            ++G V+  PS    F D   +  + +       G  NA   L  F    +  Y   R  
Sbjct: 175 IISGDVSRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRK 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282
                TS LSP+L  G +S R+ +              NR  EE V+L IK         
Sbjct: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNRAGEESVNLFIK--------- 285

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             +  RE+ R+L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+
Sbjct: 286 -SIGLREYSRYLSFNHP-CTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRE 343

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW+H+R+R++ ASF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS
Sbjct: 344 LWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDS 403

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456
             + RI NP  +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NY
Sbjct: 404 REFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNY 463

Query: 457 PLPIV 461
           PLPIV
Sbjct: 464 PLPIV 468


>gi|297563254|ref|YP_003682228.1| deoxyribodipyrimidine photo-lyase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847702|gb|ADH69722.1| Deoxyribodipyrimidine photo-lyase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 435

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/335 (36%), Positives = 177/335 (52%), Gaps = 23/335 (6%)

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--V 188
           +  ++F    ++PPG +       YKV+TP+ KA       A  R    P  R+  P  V
Sbjct: 116 LTVRAFPGLTVVPPGEVTPAGGDHYKVFTPYWKAW----EAAAWRDPVAPPDRVVLPEGV 171

Query: 189 TPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            P  +P        A+    P  GE+ A   L  +    +  Y ++ D      TS LS 
Sbjct: 172 RPGELPGRGTDGLGALAEDLPRGGERAARERLDAWLSSGLAAYPDRHDDLPGAATSHLSA 231

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
            L +G LSP +           L   P +G  +++ +L WR+F+  + A +P+V + + +
Sbjct: 232 DLRLGCLSPLEA---------ALAASPLAGGEAFVRQLAWRDFHHQVTAAFPAVNV-RDY 281

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P   K  W +D   L AWK+G TG P++DA MRQL   G++HNR RMITA+FL + L V
Sbjct: 282 RPRDRK--WREDPDALDAWKRGRTGVPVVDAGMRQLLREGFVHNRARMITAAFLTRTLRV 339

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            WR G ++F + L+DGD+A+N G WQW A TGND+ P  R FNP  Q +RFDP+G ++R 
Sbjct: 340 HWREGADHFHAHLVDGDVANNYGNWQWVAGTGNDTRPN-RAFNPLRQARRFDPEGVYVRR 398

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           +LPEL ++P    H P  W +++     YP PI D
Sbjct: 399 YLPELADLPGGRAHTP--WREEHP-PPGYPAPIAD 430


>gi|126461586|ref|YP_001042700.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103250|gb|ABN75928.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 471

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 144/478 (30%), Positives = 216/478 (45%), Gaps = 33/478 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L  A       +I +FI  PE          +      +  Q  +
Sbjct: 8   ILWFRRDLRLADNPMLAEAAATGR-PLIPLFILDPETEALGAAPKWRLGLGVEAFAQALE 66

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  + ++ +         ++  L +   +     + ++R +E +   RD+ +   L+  
Sbjct: 67  GLGSRLVLRR-------GPALAVLKTLVAETGAAGVHWSRLWEPDWRARDEGVTAGLRQA 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187
            I         +  P  +       Y+VYTPF KA+    V A   S P PA RL  P  
Sbjct: 120 GIEAARHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAA---SFPPPA-RLPSPAE 175

Query: 188 ------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                 +   ++ R  +     + P   +GE  A   L +F    +  Y  +RD P    
Sbjct: 176 WPVSERLASWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPV 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LS  L+ G +S R  W+      +    + ++GA  +L EL WREF  HL+   P +
Sbjct: 236 TSRLSENLTYGEISARSLWH----AGMRARAEGRAGAEKFLQELAWREFGWHLLYHTPEI 291

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   W +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L
Sbjct: 292 ARRNWRGDW-DAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYL 350

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFRIFNP  Q ++FDP+
Sbjct: 351 TKHLLTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPE 410

Query: 422 GTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
             + R +L E+   P     A     P SW  + D    YP P+V   +     L  Y
Sbjct: 411 SAYRRRFLAEIARRPGPEALAFFEAVPRSWGLRPDRC--YPRPVVGLAEGRERALAAY 466


>gi|297848668|ref|XP_002892215.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338057|gb|EFH68474.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 612

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 154/492 (31%), Positives = 240/492 (48%), Gaps = 58/492 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G    + +  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 66  SLKALGSDLTFIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183
           R I  +S++  +L  P  I     + +  ++ + K  +   +++ +     R +P+ A  
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMPIESVMLPPPWRLMPITAAA 181

Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    +    + P  A+    +  G  NA  IL +F ++++  Y +       
Sbjct: 182 EAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    EE  DL ++           +
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  
Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 405

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465

Query: 455 NYPLPIVDHKKA 466
           NY  PIVD + A
Sbjct: 466 NYAKPIVDIETA 477


>gi|304650441|gb|ADM47404.1| cryptochrome 2 [Brassica juncea]
          Length = 619

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 154/478 (32%), Positives = 236/478 (49%), Gaps = 39/478 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLTQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 66  SLKALGSELTLIKTHNTVSAI--LD--CVRATGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I  +S++  +L  P  I     + +  +  + K  +   V++ +   P   I LT   
Sbjct: 122 RGIAVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMSVESVVLPPPWRLIPLTAAE 181

Query: 189 T-------PSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           T          +    + P  A+    +  G  NA  IL +F ++++  Y +        
Sbjct: 182 TVWACSLEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKNSKKVVGN 241

Query: 241 GTSQLSPYLSIGVLSPR---QCWNRLKEEF--VDLLIKPKSGAFSWLNELIWREFYRHLM 295
            TS LSPYL  G +S R   QC  R+K+     D   + +  A  +L  +  R++ R++ 
Sbjct: 242 STSLLSPYLHFGEISVRRVFQC-ARMKQIIWARDKNGQGEESAVLFLRGIGLRDYSRYIC 300

Query: 296 AFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             +P     S+     F PW      + D    +AW+QG TG+P++DA MR+L   GWMH
Sbjct: 301 FNFPFTHEQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGMRELWATGWMH 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ N
Sbjct: 355 NRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDN 414

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462
           P IQG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  NY  PIVD
Sbjct: 415 PAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVD 472


>gi|37725011|gb|AAO23972.1| cryptochrome 2B [Pisum sativum]
          Length = 597

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 232/474 (48%), Gaps = 23/474 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            M+  +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL
Sbjct: 2   GMNRTIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124
           + + +SL   G      +    D +++ L       + TK+ +N  Y+ ++ VR   + E
Sbjct: 60  VHLDQSLKSLGAGLVIIKT---DSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKE 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           K ++  V  +S++  +L  P  I + +   +  + PF    +   ++      P   I  
Sbjct: 117 KLVEQGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILA 176

Query: 185 TGPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            G V   +I +             ++   +  G   +   L +F +  + +Y   R    
Sbjct: 177 QGKVEKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLG 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWREFYRHL 294
              TS LSPY+  G LS R+ +   + + +    +  I  +  A  +L  + +RE+ R+L
Sbjct: 237 GDSTSLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYL 296

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P   + +P +   +   WN D    +AW+QG TG+P++DA MR+L   GW+HN++R
Sbjct: 297 CFSFP-FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ +P + 
Sbjct: 356 VIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVL 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462
           G+++DP G +IR WLPEL  +P ++IH    AP + L  + + L  NYP PI+D
Sbjct: 416 GRKYDPAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIID 469


>gi|27467381|ref|NP_764018.1| putative deoxyribodipyrimidine photolyase [Staphylococcus
           epidermidis ATCC 12228]
 gi|27314924|gb|AAO04060.1|AE016745_159 putative deoxyribodipyrimidine photolyase [Staphylococcus
           epidermidis ATCC 12228]
          Length = 457

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 103/274 (37%), Positives = 161/274 (58%), Gaps = 10/274 (3%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           + I E++  +   +F  + +  Y E R+      TSQLS YL+ G++   Q +N L + +
Sbjct: 187 YGISERDVQNRWSEFLSQDIENYKENREYLPEVLTSQLSIYLAYGMIDIIQVFNDLLQNY 246

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                K +    +++ ELI+REFY  LM  YP       F    ++++W+ +    + WK
Sbjct: 247 D----KNEQNYETFIRELIFREFYYVLMTNYPETAHV-AFKEKYQQLKWSYNEENFKLWK 301

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TGFPIIDAAM +L T G+MHNR+RM+ + FL KDL +DW  GE +F  +L+D   AS
Sbjct: 302 DGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTKDLFIDWIWGESFFKQKLIDYYAAS 361

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N  GWQW+ASTG D+VPYFR+FNP  Q +RFD    +I+ ++P LN V  +Y+H  H + 
Sbjct: 362 NVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNARYIKTYIPRLNQVDAKYLHDTHKFE 421

Query: 448 DK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
            +      ++  +YP  ++DHK++    ++++ A
Sbjct: 422 QQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKA 455


>gi|222478726|ref|YP_002564963.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
 gi|222451628|gb|ACM55893.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
          Length = 465

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 144/471 (30%), Positives = 216/471 (45%), Gaps = 34/471 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R D R  DN  L AA       V+ VF+   + +   G  ARQ  F     L+ 
Sbjct: 1   MQLFWHRRDPRTRDNVGLAAAART--GTVVPVFVYDTDLFGTMG--ARQRAF----FLRH 52

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            K L ++   F         D  + L     +     +FYN  Y      R + +E  L+
Sbjct: 53  VKRLKERYREFGSDLVVRAGDPEKVLVDLADEYDAEAVFYNEYYRPARRNRQRAVEGALE 112

Query: 129 H-RVICKSFDDSVLLPPGSI----LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
              V   +  D+VL+ PG +     NH  + +  +    K        AD     +  +R
Sbjct: 113 GFGVETNARTDAVLVDPGRLEERYANHG-RFHDEWETVPKPEPSPEPDADA----LVNMR 167

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----- 238
               V+  +     D    A       G + A      F +  +  Y + RD  A     
Sbjct: 168 DEKTVSEIDPDIDPDIDLPAT------GYRAARERFDGFLEHGIRSYADTRDDLARAVEA 221

Query: 239 -IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
                S++SPYL+ G +  R+ W    + F       +     + +EL WRE   HL+ +
Sbjct: 222 PTHAVSRMSPYLATGAIGIREMWADATDAFEAATGDERRNVDKYRDELSWREQMYHLLYY 281

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P + +   +  +  +I W +D    +AW +G TG+P++DA MRQLN  G++HNR R + 
Sbjct: 282 TPDLAVAN-YKSFPNEIAWREDDTAFEAWTRGETGYPLVDAGMRQLNAEGYVHNRPRQVV 340

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DWR G  YF +QL+D D ASN+G WQW ASTG DSV   RIF+P  Q  +
Sbjct: 341 ASFLTKHLLIDWRRGARYFTTQLIDHDHASNHGAWQWTASTGTDSVD-VRIFDPVAQMAK 399

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH--APHSWLDKNDLSLNYPLPIVDHKKA 466
           +D   TF++ ++PEL +VP + I      S +++  L+  YP PIVD  + 
Sbjct: 400 YDADATFVKEYVPELRDVPAEEIVDWPTLSRVERETLAPEYPHPIVDRNEG 450


>gi|45935264|gb|AAS79667.1| cryptochrome 2B apoprotein [Pisum sativum]
 gi|45935266|gb|AAS79668.1| cryptochrome 2B apoprotein [Pisum sativum]
          Length = 598

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 232/474 (48%), Gaps = 23/474 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            M+  +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL
Sbjct: 2   GMNRTIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124
           + + +SL   G      +    D +++ L       + TK+ +N  Y+ ++ VR   + E
Sbjct: 60  VHLDQSLKSLGAGLVIIKT---DSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKE 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           K ++  V  +S++  +L  P  I + +   +  + PF    +   ++      P   I  
Sbjct: 117 KLVEQGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILA 176

Query: 185 TGPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            G V   +I +             ++   +  G   +   L +F +  + +Y   R    
Sbjct: 177 QGKVEKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLG 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWREFYRHL 294
              TS LSPY+  G LS R+ +   + + +    +  I  +  A  +L  + +RE+ R+L
Sbjct: 237 GDSTSLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYL 296

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P   + +P +   +   WN D    +AW+QG TG+P++DA MR+L   GW+HN++R
Sbjct: 297 CFSFP-FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ +P + 
Sbjct: 356 VIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVL 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462
           G+++DP G +IR WLPEL  +P ++IH    AP + L  + + L  NYP PI+D
Sbjct: 416 GRKYDPAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIID 469


>gi|83814965|ref|YP_445212.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
 gi|83756359|gb|ABC44472.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
          Length = 463

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 147/483 (30%), Positives = 214/483 (44%), Gaps = 45/483 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L   R DLR+ DN  L  AC  SD +V+  FI  P Q      +A  S   +A L++  K
Sbjct: 6   LFLFRRDLRLADNTGLARACRASD-EVVPAFIFDPRQCDPDN-NAFFSEHAFAFLVRSLK 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L ++             D    L        ++ +  NR Y     RRD  L      R
Sbjct: 64  ELRRRLRERGGRLFVFEGDPAAILSELVSAGDISAVHVNRDYTPFARRRDDQL------R 117

Query: 131 VICKS----FDDS---VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +C+     F  S   +L  P  +       Y  +TPFR+       +A   S P P  +
Sbjct: 118 SVCREEGARFQSSNALLLTEPEEVQPSGGGAYHTFTPFRR-------RAQSVSTPPPRGK 170

Query: 184 LTGP-------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           + GP       V  + +  +  YP    D     G    +  L +   E +  Y + R  
Sbjct: 171 VEGPFCDRALSVETTPLETYDRYPTD--DLRAKGGRAEGIEFLEEI--ETLGAYRDARHQ 226

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA +  + LS +   G +S R+    +K+ F D            +++  WR+FY HL+ 
Sbjct: 227 PAKESLTALSAHHKFGTISIRESLYVVKKAFEDY--------HKLISQFYWRDFYTHLL- 277

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           F+    +     P    I W  +      W +G TG P +DA MR+L   G+MHNR+RM+
Sbjct: 278 FHRPEQLTTSLRPIGRHIPWRNERGEFDRWHEGATGVPFVDAGMRELRETGYMHNRVRMV 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDLLVDWR G ++F   L D D A N G WQWAAS G D     RI+NP  Q +
Sbjct: 338 VASFLTKDLLVDWRWGAQHFARTLTDYDPAVNAGNWQWAASVGTDY--RLRIYNPYSQAE 395

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           + DP+  +I+ W+PE+ +V    + A  +  D +D +  YP PIVD   A H   + +  
Sbjct: 396 KHDPEAEYIKRWVPEVRDVDADRL-ASGTQEDFSDAAPGYPAPIVDRNDAYHRAKDAFRE 454

Query: 477 AKK 479
           A +
Sbjct: 455 AGR 457


>gi|114769238|ref|ZP_01446864.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
           photoreceptor) [alpha proteobacterium HTCC2255]
 gi|114550155|gb|EAU53036.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
           photoreceptor) [alpha proteobacterium HTCC2255]
          Length = 465

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 140/427 (32%), Positives = 206/427 (48%), Gaps = 28/427 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R D R +D++AL AA H+S   +I +FI   E +   G + +    +  ++   +K
Sbjct: 8   IIWFRRDFRFSDHEALSAA-HSSGRPIIPIFI-FDEVFEALGAAPKWR--LGLAIECFKK 63

Query: 71  SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            L + G   I+ + + C       E L     +     ++++R Y+   + RD  ++  L
Sbjct: 64  KLERMGSNLILRRGNAC-------EILQELVNETGALDVYWSRAYDPVSIHRDTKVKSLL 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRSLPVPAIR 183
                  SF   VL  P      + + +KVYTPF       L  N   + +  L  P + 
Sbjct: 117 N----GTSFKGHVLFEPWVPKTKSGENFKVYTPFWRHVSSQLTVNSTLSKISKLHSPHVW 172

Query: 184 LTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               +  +  +    +     +     +GE+ AL+ L  F   KV  Y   RD P    T
Sbjct: 173 PKSDLLSNWGLGEEMNRGRNVVSKYINVGEEVALNKLENFIVSKVNGYKIDRDFPMRHAT 232

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS  L+ G +SPR  +N L+  F     K   GA  +L EL+WREF  HL+  +P + 
Sbjct: 233 SGLSENLTYGEISPRLIFNSLRNTFD----KNDLGAEHFLKELVWREFAYHLLWHFPKLD 288

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                  W +   W   +   +AW QG TG   +DA MR+L T G MHNRLRMI  S+L 
Sbjct: 289 TQCWRGEWND-FPWKGINKNAKAWMQGRTGQSFVDAGMRELYTTGTMHNRLRMIVGSYLT 347

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L  DWRIG ++F   L+D D ASN  GWQW A  G D+ PYFRIFNP +Q ++FD  G
Sbjct: 348 KHLQTDWRIGLKWFEDCLIDWDPASNAMGWQWIAGCGADAAPYFRIFNPNLQAEKFDSDG 407

Query: 423 TFIRHWL 429
            + + WL
Sbjct: 408 QYRKKWL 414


>gi|294507095|ref|YP_003571153.1| deoxyribodipyrimidine photolyase [Salinibacter ruber M8]
 gi|294343423|emb|CBH24201.1| Deoxyribodipyrimidine photolyase [Salinibacter ruber M8]
          Length = 494

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 146/483 (30%), Positives = 214/483 (44%), Gaps = 45/483 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L   R DLR+ DN  L  AC  SD +V+  FI  P Q      +A  S   +A L++  K
Sbjct: 37  LFLFRRDLRLADNTGLARACRASD-EVVPAFIFDPRQCDPDN-NAFFSEHAFAFLVRSLK 94

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L ++             D    L        ++ +  NR Y     RRD  L      R
Sbjct: 95  ELRRRLRERGGRLFVFEGDPAAILSELISAGDISAVHVNRDYTPFARRRDDQL------R 148

Query: 131 VICK-------SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +C+       S +  +L  P  +       Y  +TPFR+       +A   S P P  +
Sbjct: 149 SVCREEGARFQSSNALLLTEPEEVQPSGGGAYHTFTPFRR-------RAQSVSTPPPRGK 201

Query: 184 LTGP-------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           + GP       V  + +  +  YP    D     G    +  L +   E +  Y + R  
Sbjct: 202 VEGPFCDRALSVETTPLETYDRYPTD--DLRAKGGRAEGIEFLEEI--ETLGAYRDARHQ 257

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA +  + LS +   G +S R+    +K+ F D            +++  WR+FY HL+ 
Sbjct: 258 PAKESLTALSAHHKFGTISIRESLYVVKKAFEDY--------HKLISQFYWRDFYTHLL- 308

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           F+    +     P    I W  +      W +G TG P +DA MR+L   G+MHNR+RM+
Sbjct: 309 FHRPEQLTTSLRPIGRHIPWRNERGEFDRWHEGATGVPFVDAGMRELRETGYMHNRVRMV 368

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDLLVDWR G ++F   L D D A N G WQWAAS G D     RI+NP  Q +
Sbjct: 369 VASFLTKDLLVDWRWGAQHFARTLTDYDPAVNAGNWQWAASVGTDY--RLRIYNPYSQAE 426

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           + DP+  +I+ W+PE+ +V    + A  +  D +D +  YP PIVD   A H   + +  
Sbjct: 427 KHDPEAEYIKRWVPEVRDVDADRL-ASGTQEDFSDAAPGYPAPIVDRNDAYHRAKDAFRE 485

Query: 477 AKK 479
           A +
Sbjct: 486 AGR 488


>gi|167581248|ref|ZP_02374122.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH]
          Length = 311

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/274 (40%), Positives = 150/274 (54%), Gaps = 8/274 (2%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE  A  +LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   +    
Sbjct: 39  FGEDAAHSLLRAFVDSRLGGYATERDRPGIASTSRLSPYVRFGNLSVRQIWHAAVDAHAH 98

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                ++    +L+EL WREF    +  +P +   +      + + W  D   L AW++G
Sbjct: 99  RAAT-QADLDKFLSELGWREFCWAQLYRFPDLPR-RNLRHTLDGMPWRDDPAGLAAWRRG 156

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P +DA MR+L   GWMHNR RM+ ASFLVK LL+DWR GE +F   L+D D ASN 
Sbjct: 157 ATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREGEAWFWDTLVDADAASNA 216

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
             WQW A  G D+ PYFRIFNP  QGK+FDP G ++R W+PEL  +P   IH P +    
Sbjct: 217 ANWQWVAGCGADAAPYFRIFNPVAQGKKFDPDGAYVRRWVPELAGLPPAAIHEPWAAPPA 276

Query: 450 ND------LSLNYPLPIVDHKKACHHTLNQYYAA 477
                   L   YP+P+V H  A    L+ +  A
Sbjct: 277 QLAAAGVRLGDTYPVPVVAHDAARRRALDAFATA 310


>gi|167619333|ref|ZP_02387964.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4]
          Length = 311

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/274 (40%), Positives = 149/274 (54%), Gaps = 8/274 (2%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE  A  +LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W    +    
Sbjct: 39  FGEDAAHSLLRAFVDSRLGGYATERDRPGIASTSRLSPYVRFGNLSVRQIWQAAVDAHAH 98

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                ++    +L+EL WREF    +  +P +   +      + + W  D   L AW++G
Sbjct: 99  RAAT-QADLDKFLSELGWREFCWAQLYRFPDLPR-RNLRHTLDGMPWRDDPAGLAAWRRG 156

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P +DA MR+L   GWMHNR RM+ ASFLVK LL+DWR GE +F   L+D D ASN 
Sbjct: 157 ATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREGEAWFWDTLVDADAASNA 216

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
             WQW A  G D+ PYFRIFNP  QGK+FDP G ++R W+PEL  +P   IH P +    
Sbjct: 217 ANWQWVAGCGADAAPYFRIFNPVAQGKKFDPDGAYVRRWVPELAGLPPAAIHEPWAAPPA 276

Query: 450 ND------LSLNYPLPIVDHKKACHHTLNQYYAA 477
                   L   YP+P+V H  A    L+ +  A
Sbjct: 277 QLAAAGVRLGDTYPVPVVAHDAARRRALDAFATA 310


>gi|224063235|ref|XP_002301054.1| predicted protein [Populus trichocarpa]
 gi|222842780|gb|EEE80327.1| predicted protein [Populus trichocarpa]
          Length = 681

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 149/485 (30%), Positives = 225/485 (46%), Gaps = 46/485 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYA 63
           +     +VW R DLR+ DN AL A        V+AVF+  PE+   H    R S + +  
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEE-EGHYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122
           SL  +  SL   G      + +   DS+  L         T+LF+N  Y+ ++ VR  + 
Sbjct: 59  SLAHLDSSLRSLGTSLVTKRST---DSVSTLLEVIKSTGATQLFFNHLYDPLSLVRDHRA 115

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            E      +  +SF+  +L  P  + +   + +  +  F    +      +   LP P  
Sbjct: 116 KEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPLLP-PKR 174

Query: 183 RLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDI 236
            ++G  +  PS +  F D   +  + +       G  NA   L  F    +  Y + R  
Sbjct: 175 IISGDASRCPSEMLVFEDELEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSKNRRK 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282
                TS LSP+L  G +S R+ +              N+  EE V+L +K         
Sbjct: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLK--------- 285

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             +  RE+ R+L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+
Sbjct: 286 -SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWVVDGGYFKAWRQGRTGYPLVDAGMRE 343

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW+H+R+R++ ASF VK L + WR G +YF   LLD DL S+  GWQ+   T  D 
Sbjct: 344 LWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDG 403

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456
             + RI NP  +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NY
Sbjct: 404 REFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNY 463

Query: 457 PLPIV 461
           PLPIV
Sbjct: 464 PLPIV 468


>gi|254424429|ref|ZP_05038147.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
 gi|196191918|gb|EDX86882.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
          Length = 490

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/494 (28%), Positives = 240/494 (48%), Gaps = 36/494 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASL 65
           L+WLRNDLR+ D++ L+ A     A +I V+   P Q++          + ++ F+  ++
Sbjct: 4   LLWLRNDLRLHDHEPLHRATEQG-ADIIPVYCFDPRQFQATSFGFPKTGSYRAQFLIETV 62

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             ++  L  +G   ++ Q          ++  D       +  ++++ +    E+  ++ 
Sbjct: 63  AALKAELRSRGSNLVILQGKPEEEIPALVKAFD-------IAAVYWHEEVTPEEIEVEQR 115

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           LE  L Q +V  + +  + L  P  +     Q+ +V+T FRKA+ +N         P   
Sbjct: 116 LETVLNQLKVTSEVYWGATLYHPDDLPFEVSQLPEVFTQFRKAIEKNTQVFPTFPTPEKL 175

Query: 182 IRLTGPVTPSNIPRFFDYPFQ--AIDPM----FPIGEQNALHILRKFC--KEKVYYYVEQ 233
             L   + P  +P   D   +   ID      F  GE   L  L+ +    +++  Y E 
Sbjct: 176 PSLPNEIEPGELPSLSDLGLERTPIDEKGVLPFKGGESKGLDRLQHYFWNADRLQRYKET 235

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +S+ SP+L+ G LSPR+ +  ++    +   K  +  +  + EL+WR+++R
Sbjct: 236 RNGMLGADYSSKFSPWLANGSLSPRRVYEEVQR--YERERKKNNSTYWMIFELMWRDYFR 293

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +   Y      K  I     IEW +D      W++G TG+P+IDA MR+L   G+M NR
Sbjct: 294 FVCVKYGRKIFRKGGIRGL-PIEWQQDWKRFDLWREGKTGYPLIDANMRELAATGFMSNR 352

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASFL K+L +DWR+G E+F S L+D D+ SN G W + A  GND+   FR FN  
Sbjct: 353 GRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIP 411

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
            Q K +D +G +++HWLPEL  +P + +H P +            L ++YP P+VD +K+
Sbjct: 412 KQSKDYDSEGKYVKHWLPELKTLPAKKVHTPWTLQTVEQKQFNVRLGVDYPNPVVDLQKS 471

Query: 467 CHHTLNQYYAAKKQ 480
                 +Y  A +Q
Sbjct: 472 VSVNERRYEDAWQQ 485


>gi|284173137|ref|ZP_06387106.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
 gi|261600969|gb|ACX90572.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
          Length = 431

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 220/459 (47%), Gaps = 57/459 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  N + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALGNCE-KVIPTFILDPRQVGDENQYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + S  L + V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELGKRGSRLYVY----FGLAEEVIKS--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLPVPAIR 183
            R  + KSF+D +L       N     YK +T F  A+    ++  +Q +  +    ++ 
Sbjct: 117 ERGKVMKSFEDYLLTSKNDFKN-----YKNFTTFYNAVKNKQVRKPIQNNYTNYYKNSLG 171

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               + PS   R               G +  L ++ +  K+  Y    +RD  A    +
Sbjct: 172 DEYELPPSQGERG--------------GRKEGLKLIDR-AKQIDY---SRRDFVAEDNRT 213

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G LS R+ +  L +              + + +L WR+FY  L+A+Y     
Sbjct: 214 FLSPHLKFGTLSVREVYYSLVDNQ------------AIIRQLYWRDFY-TLLAYYNERVF 260

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +P       IEW  +  LLQAW  G TG+PIIDA MRQLN  G M NR+RM+TA FLVK
Sbjct: 261 YEPLRREYSCIEWGNNEKLLQAWVHGKTGYPIIDAGMRQLNQTGDMPNRVRMLTAFFLVK 320

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DW+IGE YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  
Sbjct: 321 VLLIDWKIGERYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAK 378

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           +I+ W+ EL +   + IH  + +  K     NYP PIVD
Sbjct: 379 YIKRWVKELEDYDAKIIHNAYKYTLK-----NYPNPIVD 412


>gi|154343744|ref|XP_001567816.1| DNA repair enzyme [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 541

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 157/541 (29%), Positives = 233/541 (43%), Gaps = 94/541 (17%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TPEQWRQHGISARQSHFIYASL 65
           V L   R DLR+ DN  L A C  +  + I+V  A    P Q  +     R  +F  A  
Sbjct: 27  VALFLFRRDLRVVDNTGLQALCDEAAHRSISVLTAFFFNPIQCDKE----RNPYFGDAFF 82

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ------RVTKLFYNRQYEINEVRR 119
               +SL     +    Q SN    +   D  CL++       V  L +N  Y    + R
Sbjct: 83  QFFCESLVD---LDGAAQLSNGLVCLRGSDEECLRRIHDSGYEVKVLGFNEDYTPFALSR 139

Query: 120 DKLLEKRLQ-HRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------- 168
           D+LL    + H ++C +   D  L P   +     Q Y V+TPF K  +           
Sbjct: 140 DRLLRDYAEKHGIVCVTGPHDYSLRPLDDVAKGPDQPYSVFTPFYKKFMAEHAHRVAEPL 199

Query: 169 -----LVQADLRSLPVPAIR--LTGPVTP-SNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
                 VQ+ L S P   +   L  P    +++P+  D+  +A              + R
Sbjct: 200 WGNVKKVQSMLVSQPKKHLEHHLVNPARLYTHMPQVQDHGGRAEG------------LKR 247

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
             C E +  Y + RD  A   TS LSP++  G +S R+ W+          ++       
Sbjct: 248 LACVETLRRYADVRDDIAGDKTSHLSPHMKCGTVSTREVWH--------ASVQALGTGHP 299

Query: 281 WLNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDS 320
           +  +L+WREFY  L    P +  G+                    PF P  +   WN  +
Sbjct: 300 FTRQLVWREFYAMLAFTRPRLLQGQLNSFLGKKNIMKATQPKQNAPFQPSYDNYTWNWKA 359

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
              +A+K+G TG P++DAA+R L   GW HNR R++ ++F VK L +DWR  E +F +  
Sbjct: 360 EHFEAFKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVA 419

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           +D D+A+NNGGW W++  G D+ PYFR FN   Q +RFDP   FI  W+PEL  VP   +
Sbjct: 420 VDYDVANNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAEVPPSVV 479

Query: 441 H------------APHSWLDKND-------LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           H            A  ++  K D        + +YP+PIVD K A    + +Y    K  
Sbjct: 480 HKWEEYCAKDRDKATTNYSKKRDDMGKRGAYTTSYPVPIVDTKAATKAIIEEYKKYGKSK 539

Query: 482 L 482
           +
Sbjct: 540 M 540


>gi|322505598|emb|CAM40576.2| putative deoxyribodipyrimidine photolyase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 541

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 157/541 (29%), Positives = 233/541 (43%), Gaps = 94/541 (17%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TPEQWRQHGISARQSHFIYASL 65
           V L   R DLR+ DN  L A C  +  + I+V  A    P Q  +     R  +F  A  
Sbjct: 27  VALFLFRRDLRVVDNTGLQALCDEAAHRSISVLTAFFFNPIQCDKE----RNPYFGDAFF 82

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ------RVTKLFYNRQYEINEVRR 119
               +SL     +    Q SN    +   D  CL++       V  L +N  Y    + R
Sbjct: 83  QFFCESLVD---LDGAAQLSNGLVCLRGSDEECLRRIRDSGYEVKVLGFNEDYTPFALSR 139

Query: 120 DKLLEKRLQ-HRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------- 168
           D+LL    + H ++C +   D  L P   +     Q Y V+TPF K  +           
Sbjct: 140 DRLLRDYAEKHGIVCVTGPHDYSLRPLDDVAKGPDQPYSVFTPFYKKFMAEHAHRVAEPL 199

Query: 169 -----LVQADLRSLPVPAIR--LTGPVTP-SNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
                 VQ+ L S P   +   L  P    +++P+  D+  +A              + R
Sbjct: 200 WGNVKKVQSMLVSQPKKHLEHHLVNPARLYTHMPQVQDHGGRAEG------------LKR 247

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
             C E +  Y + RD  A   TS LSP++  G +S R+ W+          ++       
Sbjct: 248 LACVETLRRYADVRDDIAGDKTSHLSPHMKCGTVSTREVWH--------ASVQALGTGHP 299

Query: 281 WLNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDS 320
           +  +L+WREFY  L    P +  G+                    PF P  +   WN  +
Sbjct: 300 FTRQLVWREFYAMLAFTRPRLLQGQLNSFLGKKNIMKATQPKQNAPFQPSYDNYTWNWKA 359

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
              +A+K+G TG P++DAA+R L   GW HNR R++ ++F VK L +DWR  E +F +  
Sbjct: 360 EHFEAFKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVA 419

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           +D D+A+NNGGW W++  G D+ PYFR FN   Q +RFDP   FI  W+PEL  VP   +
Sbjct: 420 VDYDVANNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAEVPPSVV 479

Query: 441 H------------APHSWLDKND-------LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           H            A  ++  K D        + +YP+PIVD K A    + +Y    K  
Sbjct: 480 HKWEEYCAKDRDKATTNYSKKRDDMGKRGAYTTSYPVPIVDTKAATKAIIEEYKKYGKSK 539

Query: 482 L 482
           +
Sbjct: 540 M 540


>gi|133921974|emb|CAI63876.1| cryptochrome 2 [Brassica napus]
          Length = 618

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 157/481 (32%), Positives = 240/481 (49%), Gaps = 45/481 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLTQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 66  SLKALGSEPTLIKTHNTVSAI--LD--CVRATGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT--G 186
           R I  +S++  +L  P  I     + +  +  + K  +   V++ +   P   I LT  G
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMPVESVVIPPPWRLIPLTAAG 181

Query: 187 PVTPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            V   +I         + P  A+    +  G  NA  IL +F ++++  Y +        
Sbjct: 182 TVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKNSKKVVGN 241

Query: 241 GTSQLSPYLSIGVLSPR---QCWNRLKEEFVDLLIKPKSG-----AFSWLNELIWREFYR 292
            TS LSPYL  G +S R   QC  R+K+    +  + K+G     A  +L  +  R++ R
Sbjct: 242 STSLLSPYLHFGEISVRRVFQC-ARMKQ---IIWARDKNGQGVESAVLFLRGIGLRDYSR 297

Query: 293 HLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           ++   +P     S+     F PW      + D    +AW+QG TG+P++DA MR+L   G
Sbjct: 298 YICFNFPFTHEQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGMRELWATG 351

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R
Sbjct: 352 WMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDR 411

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIV 461
           + NP IQG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  NY  PIV
Sbjct: 412 LDNPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIV 471

Query: 462 D 462
           D
Sbjct: 472 D 472


>gi|296083651|emb|CBI23640.3| unnamed protein product [Vitis vinifera]
          Length = 646

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 149/481 (30%), Positives = 241/481 (50%), Gaps = 35/481 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++ S  +VW R DLR+ DN AL  A    +  V+ VFI  P++  Q         ++  S
Sbjct: 2   SSDSRTVVWFRRDLRVDDNPALATAA--KEGSVLPVFIWCPKEEGQFYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123
           L+ +++SL   G      +    + +IE L         TKL YN  Y+ I+ VR   + 
Sbjct: 60  LMHLKQSLRSLGADLLLIKA---ESTIEALLECIHAIGATKLVYNHLYDPISLVRDHSIK 116

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +K ++  +  +S++  +L  P  I +     +  +  +    +   +Q +  SL +P  R
Sbjct: 117 QKLMELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLS--MQMEFVSL-LPPWR 173

Query: 184 L---TGPVTPSNIPRFF--DYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234
           L    G V   +I      D   ++ + +    +  G  NA   L +F ++ ++ Y ++R
Sbjct: 174 LVPAAGKVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKKR 233

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-------LNELIW 287
                  TS LSPYL  G LS R+  + ++   +  L+  K G   W       L  +  
Sbjct: 234 LKVEGNSTSLLSPYLHFGELSVRKVLHSVR---MKQLLWVKEGNSVWEESVDLFLRAIGL 290

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE+ R+L   +PS    +P +   +   W+      +AW+QG TG+P++DA MR+L   G
Sbjct: 291 REYSRYLCFNFPST-HERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATG 349

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+HNR+R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R
Sbjct: 350 WIHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDR 409

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461
           + +P IQG  +DP+G ++RHWLPEL  VPT++IH    AP + L    + L  NYP PI+
Sbjct: 410 LDSPEIQGSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPII 469

Query: 462 D 462
           +
Sbjct: 470 E 470


>gi|50659746|gb|AAT80619.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659748|gb|AAT80620.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659750|gb|AAT80621.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659752|gb|AAT80622.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659754|gb|AAT80623.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 610

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 236/488 (48%), Gaps = 58/488 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 6   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 64  SLKALGSDLTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +     R +P+ A  
Sbjct: 120 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179

Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    +    + P  A+    +  G  NA  +L +F ++++  Y +       
Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    EE  DL ++           +
Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 289

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 290 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGM 343

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  
Sbjct: 344 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 403

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 404 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 463

Query: 455 NYPLPIVD 462
           NY  PIVD
Sbjct: 464 NYAKPIVD 471


>gi|166007547|gb|ABY77607.1| At1g04400 [Arabidopsis thaliana]
 gi|166007551|gb|ABY77609.1| At1g04400 [Arabidopsis thaliana]
 gi|166007555|gb|ABY77611.1| At1g04400 [Arabidopsis thaliana]
 gi|166007557|gb|ABY77612.1| At1g04400 [Arabidopsis thaliana]
 gi|166007567|gb|ABY77617.1| At1g04400 [Arabidopsis thaliana]
          Length = 612

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 236/488 (48%), Gaps = 58/488 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 66  SLKALGSDLTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +     R +P+ A  
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    +    + P  A+    +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    EE  DL ++           +
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGM 345

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  
Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 405

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465

Query: 455 NYPLPIVD 462
           NY  PIVD
Sbjct: 466 NYAKPIVD 473


>gi|225433126|ref|XP_002285169.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 652

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 149/481 (30%), Positives = 241/481 (50%), Gaps = 35/481 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++ S  +VW R DLR+ DN AL  A    +  V+ VFI  P++  Q         ++  S
Sbjct: 2   SSDSRTVVWFRRDLRVDDNPALATAA--KEGSVLPVFIWCPKEEGQFYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123
           L+ +++SL   G      +    + +IE L         TKL YN  Y+ I+ VR   + 
Sbjct: 60  LMHLKQSLRSLGADLLLIKA---ESTIEALLECIHAIGATKLVYNHLYDPISLVRDHSIK 116

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +K ++  +  +S++  +L  P  I +     +  +  +    +   +Q +  SL +P  R
Sbjct: 117 QKLMELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLS--MQMEFVSL-LPPWR 173

Query: 184 L---TGPVTPSNIPRFF--DYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234
           L    G V   +I      D   ++ + +    +  G  NA   L +F ++ ++ Y ++R
Sbjct: 174 LVPAAGKVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKKR 233

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-------LNELIW 287
                  TS LSPYL  G LS R+  + ++   +  L+  K G   W       L  +  
Sbjct: 234 LKVEGNSTSLLSPYLHFGELSVRKVLHSVR---MKQLLWVKEGNSVWEESVDLFLRAIGL 290

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE+ R+L   +PS    +P +   +   W+      +AW+QG TG+P++DA MR+L   G
Sbjct: 291 REYSRYLCFNFPST-HERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATG 349

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+HNR+R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R
Sbjct: 350 WIHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDR 409

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461
           + +P IQG  +DP+G ++RHWLPEL  VPT++IH    AP + L    + L  NYP PI+
Sbjct: 410 LDSPEIQGSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPII 469

Query: 462 D 462
           +
Sbjct: 470 E 470


>gi|29467475|dbj|BAC67176.1| cryptochrome 2 [Armoracia rusticana]
          Length = 617

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 157/492 (31%), Positives = 237/492 (48%), Gaps = 58/492 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+ ++ VR   + EK ++
Sbjct: 66  SLKALGSELTLIKTHNTVSAI--LD--CIRITGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP---VPAIRLT 185
             +  +SF+  +L  P  I     + +  ++ + K  +   +++ +   P   +P     
Sbjct: 122 LGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLMPISTAA 181

Query: 186 GPVTPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             V   +I         + P  A+    +  G  NA  IL +F ++++  Y +       
Sbjct: 182 EAVWACSIEELGLENETEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    +E  DL +K           +
Sbjct: 242 NSTSLLSPYLHYGEISIRRIFQCARMKQIIWARDKNSEGDESADLFLKG----------I 291

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DTDVDKFKAWRQGRTGYPLVDAGM 345

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNRLR+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  
Sbjct: 346 RELWATGWMHNRLRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLP 405

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP IQG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 406 DGHELDRLDNPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465

Query: 455 NYPLPIVDHKKA 466
           NY  PIVD   A
Sbjct: 466 NYAKPIVDIDTA 477


>gi|15219720|ref|NP_171935.1| CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein
           homodimerization [Arabidopsis thaliana]
 gi|30678870|ref|NP_849588.1| CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein
           homodimerization [Arabidopsis thaliana]
 gi|3913379|sp|Q96524|CRY2_ARATH RecName: Full=Cryptochrome-2; AltName: Full=Blue light
           photoreceptor
 gi|1857038|gb|AAD09837.1| cryptochrome 2 apoprotein [Arabidopsis thaliana]
 gi|30793901|gb|AAP40403.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana]
 gi|30794033|gb|AAP40463.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana]
 gi|166007535|gb|ABY77601.1| At1g04400 [Arabidopsis thaliana]
 gi|166007545|gb|ABY77606.1| At1g04400 [Arabidopsis thaliana]
 gi|166007549|gb|ABY77608.1| At1g04400 [Arabidopsis thaliana]
 gi|166007553|gb|ABY77610.1| At1g04400 [Arabidopsis thaliana]
 gi|166007559|gb|ABY77613.1| At1g04400 [Arabidopsis thaliana]
 gi|166007561|gb|ABY77614.1| At1g04400 [Arabidopsis thaliana]
 gi|166007563|gb|ABY77615.1| At1g04400 [Arabidopsis thaliana]
 gi|166007565|gb|ABY77616.1| At1g04400 [Arabidopsis thaliana]
 gi|166007569|gb|ABY77618.1| At1g04400 [Arabidopsis thaliana]
 gi|166007573|gb|ABY77620.1| At1g04400 [Arabidopsis thaliana]
 gi|166007575|gb|ABY77621.1| At1g04400 [Arabidopsis thaliana]
 gi|166007577|gb|ABY77622.1| At1g04400 [Arabidopsis thaliana]
 gi|166007579|gb|ABY77623.1| At1g04400 [Arabidopsis thaliana]
 gi|166007585|gb|ABY77626.1| At1g04400 [Arabidopsis thaliana]
 gi|166007589|gb|ABY77628.1| At1g04400 [Arabidopsis thaliana]
 gi|166007591|gb|ABY77629.1| At1g04400 [Arabidopsis thaliana]
 gi|166007597|gb|ABY77632.1| At1g04400 [Arabidopsis thaliana]
 gi|332189571|gb|AEE27692.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|332189572|gb|AEE27693.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 612

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 236/488 (48%), Gaps = 58/488 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 66  SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +     R +P+ A  
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    +    + P  A+    +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    EE  DL ++           +
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  
Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 405

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465

Query: 455 NYPLPIVD 462
           NY  PIVD
Sbjct: 466 NYAKPIVD 473


>gi|2341035|gb|AAB70435.1| Match to Arabidopsis photolysase (PHH1) gene (gb|X99061) and
           cryptochrome 2 apoprotein (CRY2) (gb|U43397). ESTs
           gb|W43661 and gb|Z25638 come from this gene [Arabidopsis
           thaliana]
 gi|50659694|gb|AAT80593.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659696|gb|AAT80594.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659698|gb|AAT80595.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659700|gb|AAT80596.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659702|gb|AAT80597.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659722|gb|AAT80607.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659724|gb|AAT80608.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659726|gb|AAT80609.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659728|gb|AAT80610.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659730|gb|AAT80611.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659732|gb|AAT80612.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659734|gb|AAT80613.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659736|gb|AAT80614.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659738|gb|AAT80615.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659740|gb|AAT80616.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659742|gb|AAT80617.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 610

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 236/488 (48%), Gaps = 58/488 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 6   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 64  SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +     R +P+ A  
Sbjct: 120 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179

Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    +    + P  A+    +  G  NA  +L +F ++++  Y +       
Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    EE  DL ++           +
Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 289

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 290 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 343

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  
Sbjct: 344 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 403

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 404 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 463

Query: 455 NYPLPIVD 462
           NY  PIVD
Sbjct: 464 NYAKPIVD 471


>gi|221638553|ref|YP_002524815.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           KD131]
 gi|221159334|gb|ACM00314.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           KD131]
          Length = 471

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 218/478 (45%), Gaps = 33/478 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L  A       +I +FI  PE      + A     +   +    +
Sbjct: 8   ILWFRRDLRLADNPMLAEAAATGR-PLIPLFILDPET---EALGAAPKWRLGLGVEAFAR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      ++  L++   +     + ++R +E     RD+ ++  L+  
Sbjct: 64  ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQA 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187
            I   S     +  P  +       Y+VYTPF KA+    V A   S P PA RL  P  
Sbjct: 120 GIEAASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAA---SSPPPA-RLPSPAE 175

Query: 188 ------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                 +   ++ R  +     + P   +GE  A   L +F    +  Y  +RD P    
Sbjct: 176 WPVSERLACWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPV 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LS  L+ G +S R  W+      +    + ++GA  +L E+ WREF  HL+   P +
Sbjct: 236 TSRLSENLTYGEISARSLWH----AGMRARAEGRAGAEKFLQEIAWREFGWHLLYHTPEI 291

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   W +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L
Sbjct: 292 ARRNWRGDW-DAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYL 350

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFRIFNP  Q ++FDP+
Sbjct: 351 TKHLLTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPE 410

Query: 422 GTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
             + + ++ E+   P     A     P SW  + D    YP P+V   +     L  Y
Sbjct: 411 SAYRQRFVAEIARRPGPEALAFFEAVPRSWGLRPDRC--YPGPVVGLAEGRERALAAY 466


>gi|1514443|emb|CAA67508.1| blue light receptor [Arabidopsis thaliana]
          Length = 612

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 236/488 (48%), Gaps = 58/488 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 66  SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +     R +P+ A  
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    +    + P  A+    +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    EE  DL ++           +
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  
Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 405

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465

Query: 455 NYPLPIVD 462
           NY  PIVD
Sbjct: 466 NYAKPIVD 473


>gi|110667265|ref|YP_657076.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
 gi|109625012|emb|CAJ51427.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
          Length = 463

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 142/478 (29%), Positives = 226/478 (47%), Gaps = 50/478 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R D R+ DN  L AA       V+ V++   + +    I  RQ  F   ++ ++
Sbjct: 1   MRLFWHRRDPRLRDNAGLAAAARADSESVLPVYVYDSDLF--GAIGERQQAFWMHAVREL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127
           +++  ++    +        D  + + +   +  +  +  N+ Y    + RR+++  +  
Sbjct: 59  KEAYRER----ESDLIVRAGDPGDIIPALAEEYDIDGVHCNQHYRPGRQSRRERVASELD 114

Query: 128 QHRVICKSFDDSVLLPPG----SILNHALQMYKVY--TPFRKAL----IQNLVQ-ADLRS 176
           +  +      D VL+ PG    S  NH+ Q +  +   P R A      + LV   D ++
Sbjct: 115 KSGIAFDVRTDHVLVDPGRLDASYPNHS-QFHNDWEDVPKRSAYDSPPAETLVDITDSKT 173

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           +PVP + +  P                     P G + A   L +FC   +Y Y + RD 
Sbjct: 174 VPVPTVEIDLP---------------------PSGYEAARDRLDRFCDRGIYDYNDTRDD 212

Query: 237 PA------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            A          S++SPYLS G++  R+ W+     +  +    +  A  +  EL WRE 
Sbjct: 213 LAQAAEKPTTAVSRMSPYLSGGMIGIREVWDAASSVYEAVHGNERRNADKYRYELSWREQ 272

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             HL+ + P + +   +     +I+W  D    ++W  G TG+P++DA MRQLN  G++H
Sbjct: 273 NYHLLYYNPDLAVSN-YKSIPNEIQWRDDDEAFKSWALGQTGYPLVDAGMRQLNREGYIH 331

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R + ASFL K LLVDWR G  YF  QL+D D ASN+G WQW ASTG DSV   RIF+
Sbjct: 332 NRPRQVVASFLTKHLLVDWRRGARYFTKQLIDHDYASNHGSWQWIASTGTDSVD-VRIFD 390

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA--PHSWLDKNDLSLNYPLPIVDHKKA 466
           P  Q  ++D    F+R ++PEL++ PT+ I      S  D+   +  YP PIV   + 
Sbjct: 391 PVSQLSKYDDGANFVREYVPELSDTPTEKIIEWPTLSPGDRAQFAPEYPDPIVGRNEG 448


>gi|50659704|gb|AAT80598.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659706|gb|AAT80599.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659708|gb|AAT80600.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659710|gb|AAT80601.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659712|gb|AAT80602.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659714|gb|AAT80603.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659716|gb|AAT80604.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659718|gb|AAT80605.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659720|gb|AAT80606.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 610

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 235/488 (48%), Gaps = 58/488 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 6   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 64  SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183
           R I   S++  +L  P  I     + +  +  + K  +   +++ +     R +P+ A  
Sbjct: 120 RGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179

Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    +    + P  A+    +  G  NA  +L +F ++++  Y +       
Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    EE  DL ++           +
Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 289

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 290 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 343

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  
Sbjct: 344 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 403

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 404 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 463

Query: 455 NYPLPIVD 462
           NY  PIVD
Sbjct: 464 NYAKPIVD 471


>gi|166007537|gb|ABY77602.1| At1g04400 [Arabidopsis thaliana]
 gi|166007541|gb|ABY77604.1| At1g04400 [Arabidopsis thaliana]
 gi|166007543|gb|ABY77605.1| At1g04400 [Arabidopsis thaliana]
 gi|166007571|gb|ABY77619.1| At1g04400 [Arabidopsis thaliana]
 gi|166007581|gb|ABY77624.1| At1g04400 [Arabidopsis thaliana]
 gi|166007583|gb|ABY77625.1| At1g04400 [Arabidopsis thaliana]
 gi|166007587|gb|ABY77627.1| At1g04400 [Arabidopsis thaliana]
 gi|166007593|gb|ABY77630.1| At1g04400 [Arabidopsis thaliana]
 gi|166007595|gb|ABY77631.1| At1g04400 [Arabidopsis thaliana]
          Length = 612

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 235/488 (48%), Gaps = 58/488 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 66  SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183
           R I   S++  +L  P  I     + +  +  + K  +   +++ +     R +P+ A  
Sbjct: 122 RGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    +    + P  A+    +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    EE  DL ++           +
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  
Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 405

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465

Query: 455 NYPLPIVD 462
           NY  PIVD
Sbjct: 466 NYAKPIVD 473


>gi|8101444|gb|AAF72556.1|AF130425_1 cryptochrome 2 [Solanum lycopersicum]
 gi|8101446|gb|AAF72557.1|AF130426_1 cryptochrome 2 [Solanum lycopersicum]
          Length = 635

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 153/483 (31%), Positives = 235/483 (48%), Gaps = 51/483 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA  N    V+ VFI  P++  Q         ++  SL+ +++
Sbjct: 8   IVWFRRDLRIEDNPALAAAARN--GSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLIHLKQ 65

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           SL   G  +V    Q S      E +D+       TK+ YN  Y+   + RD  ++++L 
Sbjct: 66  SLKSLGAELVLMKAQ-STLSALTECVDAVG----ATKVVYNHLYDPVSLVRDHNIKQKLG 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMY----KVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              I      SV    G +LN   ++Y    KV+T F     ++L   +     +P  RL
Sbjct: 121 DLGI------SVQSYNGDLLNEPWEVYDDDGKVFTTFDAYWEKSLSIQNEPVSQLPPWRL 174

Query: 185 TGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           T       +    +   +          +   +  G  NA   L +F +  +  Y + R 
Sbjct: 175 TQAAGSVKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVESNLLAYSKDRL 234

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-----KSGAFSWLNELIWREF 290
                 TS LSPYL  G +S R+ +N ++ + + L  K      K  A  +L  +  RE+
Sbjct: 235 RVGGNSTSLLSPYLHFGEVSVRKVFNSVRLKQI-LWTKEGNSVGKDSATIYLRAIGLREY 293

Query: 291 YRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            R++   +P     S+     F PW      N D    +AW+QG TG+P++DA MR+L  
Sbjct: 294 SRYICFNFPFTHERSLLNNLRFFPW------NADQAHFKAWRQGRTGYPLVDAGMRELWA 347

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GW+HN++R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D    
Sbjct: 348 TGWVHNKIRVIVSSFFVKFLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHEL 407

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLP 459
            R+ NP +QG  +DP+G ++RHWLPEL  +P ++IH    AP + L     +L +NYP P
Sbjct: 408 ERLDNPEVQGFNYDPEGEYVRHWLPELARMPAEWIHHPWDAPLNVLKAAGVELGMNYPNP 467

Query: 460 IVD 462
           I+D
Sbjct: 468 IID 470


>gi|218662587|ref|ZP_03518517.1| Deoxyribodipyrimidine photo-lyase [Rhizobium etli IE4771]
          Length = 208

 Score =  196 bits (498), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 96/207 (46%), Positives = 127/207 (61%), Gaps = 13/207 (6%)

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWKQGYTGFPIIDAAM 340
           E+ WREF  HL+  +P +        W E+    EW  D    +AW++G TG+PI+DA M
Sbjct: 3   EIAWREFSYHLLYHFPRLASAN----WNERFDGFEWRNDDDEFRAWRRGMTGYPIVDAGM 58

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQL   GWMHNR+RMI ASFLVKDLL+DWR GE +F   L+D D A+N   WQW A +G 
Sbjct: 59  RQLRRHGWMHNRVRMIAASFLVKDLLIDWRCGEAWFRDTLVDADPANNAASWQWVAGSGA 118

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN- 455
           D+ P+FRIFNP +QG+ FDP+G ++  ++PEL  +  +YIH    AP   LD   + L  
Sbjct: 119 DASPFFRIFNPVLQGETFDPEGDYVGAYVPELRRLGPKYIHRPFEAPKRVLDAAGIILGH 178

Query: 456 -YPLPIVDHKKACHHTLNQYYAAKKQS 481
            YP P+VDH  A +  L  Y A +  S
Sbjct: 179 TYPAPMVDHGSARNRALAAYDAIRAAS 205


>gi|298694022|gb|ADI97244.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 457

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 182/348 (52%), Gaps = 34/348 (9%)

Query: 142 LPPGSILNHALQMYKVYTPFRKA-----LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
                 +N   + YKV+T F K       I+++   DL  L    I       P+N+   
Sbjct: 129 FKASKTMNKQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELIDIVI-----AAPNNLK-- 181

Query: 197 FDYPFQAIDPMFPIGEQNALHILR--KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGV 253
                   D     G   A    +  +F +  +  Y   R+ +P I  TSQLS  L+ G+
Sbjct: 182 --------DVQIDAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEIL-TSQLSIALAYGL 232

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           L   + +N L   + +     +S   +++ ELI+REFY  LM  YP     + F P    
Sbjct: 233 LDIIEIFNDLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPESA-HQSFKPKYRH 287

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
           I W+++    +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL KDL ++W  GE
Sbjct: 288 INWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTKDLFINWTWGE 347

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           ++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  +I+ +LP LN
Sbjct: 348 DFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPVLN 407

Query: 434 NVPTQYIHAPH---SWLDKNDLSL--NYPLPIVDHKKACHHTLNQYYA 476
            +  +Y+H  H   S L K  + L  +YP  IVDH++     L  + A
Sbjct: 408 QIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455


>gi|260906395|ref|ZP_05914717.1| putative deoxyribodipyrimidine photolyase [Brevibacterium linens
           BL2]
          Length = 494

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 146/464 (31%), Positives = 210/464 (45%), Gaps = 54/464 (11%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQSH 59
            TT   + LVW R+DLR++D+ AL AA   +D +VIAV+I      +  G   +      
Sbjct: 2   GTTDEDLTLVWFRDDLRVSDHAALTAA--RADGRVIAVWIREARDSQGLGPRPLGGASRW 59

Query: 60  FIYASLLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           + + SL  + + LS  GI  +F   + +        +        V  + ++R+Y     
Sbjct: 60  WAHESLAILHQELSDLGIPLLFAAGEAAAI------IPQLTGSLGVGAVRWSRRYAPASR 113

Query: 118 RRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
             D  ++  L  + +   S   S+L+ P +        YKV+TPF KA+    V  D+  
Sbjct: 114 ALDSQIKTVLHEQGLAVHSHTGSLLVEPWTAAPQGGDHYKVFTPFWKAVSGREV-GDVLP 172

Query: 177 LPVP-----------------------------AIRLTGPVTPSNIPRFFDYPFQAIDPM 207
            P P                                 +G     + PR++      I   
Sbjct: 173 TPEPQSPIDRSLVESARDCTAVTDLDGLGLLDGTGTGSGHFAAVHGPRWWQ---DTIACH 229

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           +  G + A   L       +  Y   RD+P+    TS+LSP L  G LSPRQ    L   
Sbjct: 230 WLPGTRAAADQLDDLAV-GIDGYSSTRDVPSDANSTSRLSPRLRFGELSPRQL---LHAA 285

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
                + P   A +W+ +L WREF  HL   YP +    P         +  D   L  W
Sbjct: 286 QTTRSVTPDDRA-AWVRQLYWREFSWHLTYHYPDIDY-TPIRREFRNFPYEDDDEALAHW 343

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           + G TG+P+IDA M QL   GWMHNR+RM+TASFL K+LL  W  GE++F   L+D D A
Sbjct: 344 RSGATGYPLIDAGMAQLWETGWMHNRVRMVTASFLTKNLLQHWWCGEQWFWDALVDADEA 403

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           +N   WQW A +G D+ PYFR+FNP  Q +RFDP G ++  WLP
Sbjct: 404 NNPVSWQWVAGSGADAAPYFRVFNPERQRERFDPDGAYVDDWLP 447


>gi|302332401|gb|ADL22594.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 457

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 179/340 (52%), Gaps = 18/340 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
                 +N   + YKV+T F K     L   D+    + +       +P ++  F D  F
Sbjct: 129 FKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDIYHYDLKSFEDFVIASPDDLV-FDDIAF 187

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
            +      I EQN     + F  + +  Y   RD  +   TSQLS  L+ G+L   + +N
Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLSEVLTSQLSVALAYGLLDIIEIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L   + +     ++   +++ ELI+REFY  LM  YP     + F P   +I+W+++  
Sbjct: 241 DLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPKYRQIKWSQNEA 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
              AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW  GE++F   L+
Sbjct: 296 DFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ +LP  N +  +Y+H
Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415

Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
                    +    +L L+YP  +VDH++     L  + A
Sbjct: 416 DTQRNESNLFEQGIELGLHYPRQMVDHQEKRTQVLATFKA 455


>gi|18026280|gb|AAL16379.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 612

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 156/492 (31%), Positives = 238/492 (48%), Gaps = 66/492 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 66  SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I   S++  +L  P  I     + +  +  + K  +   +++ +  LP P  RL  P+
Sbjct: 122 RGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVM--LP-PPWRLM-PI 177

Query: 189 TPS------------NIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           T +             +    + P  A+    +  G  NA  +L +F ++++  Y +   
Sbjct: 178 TAAAEAIWACLIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSK 237

Query: 236 IPAIQGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSW 281
                 TS LSPYL  G +S R   QC       W R K    EE  DL ++        
Sbjct: 238 KVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG------- 290

Query: 282 LNELIWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
              +  RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++
Sbjct: 291 ---IGLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLV 341

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DA MR+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ +
Sbjct: 342 DAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYIS 401

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN-- 450
            +  D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  
Sbjct: 402 GSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGV 461

Query: 451 DLSLNYPLPIVD 462
           +L  NY  PIVD
Sbjct: 462 ELGTNYAKPIVD 473


>gi|83764373|dbj|BAE54523.1| cryptochrome [Marchantia paleacea var. diptera]
 gi|83764375|dbj|BAE54524.1| cryptochrome [Marchantia paleacea var. diptera]
          Length = 696

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/477 (29%), Positives = 233/477 (48%), Gaps = 29/477 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VI VFI +PE+  Q         ++  SL+ +  
Sbjct: 6   IVWFRRDLRVEDNPALVAAARA--GIVIPVFIWSPEEDGQFHPGRVSRWWLKQSLIHLDS 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129
           SL   G      +     D++  L     Q   T++FYN  Y+   + RD  +++ L  H
Sbjct: 64  SLKSLGSPLIMRKSP---DTLTVLLDIVQQVGATQVFYNHLYDPVSLVRDHRVKQGLSIH 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------RSLPVPAIR 183
            +   +F+  +L  P  + +   Q +  +  F    +    + +       R + +P  R
Sbjct: 121 NIPVHTFNGDLLYEPWEVYDDEGQAFTTFDDFWDKCMNMPFEPEAPLLSPRRLVGLPPGR 180

Query: 184 LT-GPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           ++ G +    +   ++    A+    +  G  +A   L  F K  ++ Y   R       
Sbjct: 181 ISVGRIDDLGLENEYERSSNALLGRAWAPGWSSANKALEVFMKGPLHDYATHRIKADNAN 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV------DLLIKPKSGAFSWLNELIWREFYRHLM 295
           TSQLSP+L  G +S R+ ++  + + +        + +   G F  L  + +RE+ R+L 
Sbjct: 241 TSQLSPHLHFGEVSVRKIFHEARTKQILWARENSYVGEQSVGMF--LRAIGFREYSRYLS 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +   +   W  D +  ++W+QG TG+P++DA MR+L   GW+HNR+R+
Sbjct: 299 FNFP-FTHERSLLANLKSFPWRIDENSFKSWRQGRTGYPLVDAGMRELWATGWLHNRIRV 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + +SF VK L + WR G +YF   LLD DL  +  GWQ+ + +  D     R+ NP I+G
Sbjct: 358 VVSSFCVKFLQLPWRWGMKYFWDTLLDADLECDVLGWQYISGSLPDGHELDRMENPQIEG 417

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
            +FDP+G ++R WLPEL+ +PT++IH    AP + L    + L  NYPLPIVD   A
Sbjct: 418 YKFDPEGEYVRRWLPELSRLPTEWIHHPWDAPANVLRAAGVELGSNYPLPIVDISSA 474


>gi|147810570|emb|CAN71971.1| hypothetical protein VITISV_015253 [Vitis vinifera]
          Length = 641

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/481 (30%), Positives = 239/481 (49%), Gaps = 35/481 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++ S  +VW R DLR+ DN AL  A    +  V+ VFI  P++  Q         ++  S
Sbjct: 2   SSDSRTVVWFRRDLRVDDNPALATAA--KEGSVLPVFIWCPKEEGQFYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123
           L+ +++SL   G      +    + +IE L         TKL YN  Y+ I+ VR   + 
Sbjct: 60  LMHLKQSLRSLGADLLLIKA---ESTIEALLECIHAIGATKLVYNHLYDPISLVRDHSIK 116

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +K ++  +  +S++  +L  P  I +     +  +  +    +    Q +  SL +P  R
Sbjct: 117 QKLMELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLS--XQMEFVSL-LPPWR 173

Query: 184 L---TGPVTPSNIPRFF--DYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234
           L    G V   +I      D   ++ + +    +  G  NA   L +F ++ ++ Y + R
Sbjct: 174 LVPAAGKVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKXR 233

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-------LNELIW 287
                  TS LSPYL  G LS R+  + ++   +  L+  K G   W       L  +  
Sbjct: 234 LKVEGNSTSLLSPYLHFGELSVRKVLHSVR---MKQLLWVKEGNSVWEESVDLFLRAIGL 290

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE+ R+L   +PS    +P +   +   W+      +AW+QG TG+P++DA MR+L   G
Sbjct: 291 REYSRYLCFNFPST-HERPLLSNLKHFPWHAXHVHFKAWRQGRTGYPLVDAGMRELWATG 349

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+HNR+R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R
Sbjct: 350 WIHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDR 409

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461
           + +P IQG  +DP+G ++RHWLPEL  VPT++IH    AP + L    + L  NYP PI+
Sbjct: 410 LDSPEIQGSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPII 469

Query: 462 D 462
           +
Sbjct: 470 E 470


>gi|50659744|gb|AAT80618.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 610

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 151/488 (30%), Positives = 236/488 (48%), Gaps = 58/488 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 6   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 64  SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +     R +P+ A  
Sbjct: 120 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179

Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    +    + P  A+    +  G  NA  +L +F ++++  Y +       
Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    EE  DL ++           +
Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 289

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 290 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 343

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNR+R+I +SF +K LL+ W+ G +YF   LLD DL  +  GWQ+ + +  
Sbjct: 344 RELWATGWMHNRIRVIVSSFAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 403

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 404 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 463

Query: 455 NYPLPIVD 462
           NY  PIVD
Sbjct: 464 NYAKPIVD 471


>gi|167998114|ref|XP_001751763.1| cryptochrome 1a [Physcomitrella patens subsp. patens]
 gi|5731739|dbj|BAA83338.1| blue light photoreceptor cryptochrome [Physcomitrella patens]
 gi|162696861|gb|EDQ83198.1| cryptochrome 1a [Physcomitrella patens subsp. patens]
          Length = 727

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 228/475 (48%), Gaps = 31/475 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       V+ VF+ +P +  Q         ++  SL  ++ 
Sbjct: 6   IVWFRRDLRLEDNPALIAAARA--GTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTHLEL 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL + G      +     D++  L         T++FYN  Y+   + RD  +++ L  R
Sbjct: 64  SLKKLGSPLILRKSP---DTLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQGLSQR 120

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            ++  +F+  +L  P  + +   Q + VY  F K  +    + +   LP    RLTGP+ 
Sbjct: 121 GIVVHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPLLP--PRRLTGPIG 178

Query: 190 PS--------NIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQR---DIP 237
                      +   F+    A+    +  G   A   L  F +  +  Y   R   D  
Sbjct: 179 KIVGCNAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQKADGA 238

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIWREFYRH 293
           +   TS LSP+L  G LS R+ ++ +++  +    +  +G  + +N     L +RE+ R+
Sbjct: 239 SGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFREYSRY 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +  +   +   W  D    +AW+QG TG+P++DA MR+L   GW HNR+
Sbjct: 299 LSFHFP-FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWAHNRI 357

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ ASF VK L + WR G +YF   LLD DL  +  GWQ+ + +  D     RI NP +
Sbjct: 358 RVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIENPEV 417

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462
           +G RFDP G ++R W+PEL  +P +++H    AP S L     +L  NYP PIV+
Sbjct: 418 EGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVE 472


>gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
 gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
          Length = 484

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 150/484 (30%), Positives = 240/484 (49%), Gaps = 53/484 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYASL 65
           L+W RNDLR+ D+  L+ A   S+A VI  +   P Q+ Q           ++ F+  S+
Sbjct: 4   LIWFRNDLRLHDHAPLHQAVR-SNADVIPCYCFDPRQFGQTPFGFPKTGPFRAQFLLESV 62

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             +++SL  K    I+ Q H  +   +  + L       +V  +++NR+    E+  +  
Sbjct: 63  ADLRQSLRGKQSDLILRQGHPETVLPELAQAL-------KVETVYFNREVTAEEIEVENR 115

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L   L    I C  F  S L  P  +     ++ +V+T FRK + ++         P P 
Sbjct: 116 LRSALADLGIECLRFWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPK--APFPTPQ 173

Query: 182 IRLTGP-VTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFC--KEKVYYYVE 232
              T P + P  +P+  D+   + +P       F  GE  AL  L+ +   ++++  Y E
Sbjct: 174 SLSTLPDIAPGELPQLEDWGLSSPEPDARAMIQFSGGETAALARLQDYIWEQDRLKRYKE 233

Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREF 290
            R+ +     +++ SP+L++G +SPR    ++K    D +   K+ +  WL  ELIWR++
Sbjct: 234 TRNGMLQPNDSTKFSPWLALGCVSPRYIHQQVKTYEQDRV---KNNSTYWLIFELIWRDY 290

Query: 291 YRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           +R + A      F  S   G         + W  +    + W+ G TGFP+IDA MR+L 
Sbjct: 291 FRFICAKHGKRVFRVSGLQGL-------ALPWQDNRETFEKWQTGQTGFPLIDANMRELA 343

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+M NR R   ASFL K+L ++W++G E+F S L+D D+ SN G W +AA  GND+  
Sbjct: 344 ATGFMSNRGRQNVASFLTKNLGLNWQMGAEWFESCLIDYDVCSNWGNWNYAAGVGNDARG 403

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSL----NYPL 458
            FR FN   Q K +DPQG ++RHWLPEL +VP   +  P   + L++    L    +YP 
Sbjct: 404 -FRFFNIVKQAKDYDPQGDYVRHWLPELKDVPGGQVQTPWQLTALEQEMFGLTIGKDYPE 462

Query: 459 PIVD 462
           P+VD
Sbjct: 463 PMVD 466


>gi|18026276|gb|AAL16377.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|18026278|gb|AAL16378.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|166007539|gb|ABY77603.1| At1g04400 [Arabidopsis thaliana]
          Length = 612

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 151/488 (30%), Positives = 236/488 (48%), Gaps = 58/488 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 66  SLKALGSDLTLIKTHNTISAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +     R +P+ A  
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    +    + P  A+    +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    EE  DL ++           +
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNR+R+I +SF +K LL+ W+ G +YF   LLD DL  +  GWQ+ + +  
Sbjct: 346 RELWATGWMHNRIRVIVSSFAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIP 405

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465

Query: 455 NYPLPIVD 462
           NY  PIVD
Sbjct: 466 NYAKPIVD 473


>gi|78217443|gb|ABB36797.1| cryptochrome 2 [Nicotiana sylvestris]
          Length = 641

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 160/497 (32%), Positives = 241/497 (48%), Gaps = 73/497 (14%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLRI DN AL AA  N    V  VFI +P++  Q         ++  SL+ 
Sbjct: 5   SKTIVWFRRDLRIEDNPALAAAARN--GSVFPVFIWSPKEEGQFYPGRVSRWWLKQSLIH 62

Query: 68  VQKSLSQKG----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +++SL   G    ++      S   D IE + +       TK+ YN  Y+   + RD  +
Sbjct: 63  LEQSLKSLGAELVLIKAQSTLSALLDCIEAVGA-------TKVVYNHLYDPVSLVRDHNI 115

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMY----KVYTPF----RKALIQNLVQADLR 175
           +++L    I      SV    G +LN   ++Y    KV+T F     K+L   L +  + 
Sbjct: 116 KQKLGELGI------SVQSYNGDLLNEPWEVYDDDGKVFTTFDAYWEKSL--RLQKEPVS 167

Query: 176 SLP----VPAIRLTGPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKE 225
            LP    +PA    G V   ++                +   +  G  NA   L +F + 
Sbjct: 168 HLPPWKLIPA---AGSVKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVEN 224

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSG------ 277
           ++  Y + R       TS LSPYL  G +S R+ +N  RLK+     ++  K G      
Sbjct: 225 QLLAYSKDRLRVGGNSTSLLSPYLHFGEVSVRKVFNSVRLKQ-----ILWTKEGNSVGDE 279

Query: 278 -AFSWLNELIWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
            A  +L  +  RE+ R++   +P     S+     F PW      N D    +AW+QG T
Sbjct: 280 SASLYLRAIGLREYSRYICFNFPFTHERSLLNNLKFFPW------NADQARFKAWRQGRT 333

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G+P++DA MR+L   GW+HN++R+I ASF VK LL+ W+ G +YF   LLD DL S+  G
Sbjct: 334 GYPLVDAGMRELWATGWIHNKIRVIVASFFVKFLLLPWQWGMKYFWDTLLDADLESDIIG 393

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWL 447
           WQ+ + +  D     R+ NP +QG  +DP+G ++RHWLPEL  +P ++IH    AP + L
Sbjct: 394 WQYISGSLPDGHELERLDNPEVQGFNYDPEGEYVRHWLPELARMPAEWIHHPWDAPLTVL 453

Query: 448 DKN--DLSLNYPLPIVD 462
                +L +NYP PI+D
Sbjct: 454 KAAGVELGMNYPNPIID 470


>gi|1468977|gb|AAB04997.1| AT-PHH1 [Arabidopsis thaliana]
          Length = 612

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 235/488 (48%), Gaps = 58/488 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      Q  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 66  SLKALGSDLTLIQTHNTISAI--LD--CIRVTGPTKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +     R +P+ A  
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    +    + P  A+    +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    EE  DL ++           +
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   L D DL  +  GWQ+ + +  
Sbjct: 346 RELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIP 405

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465

Query: 455 NYPLPIVD 462
           NY  PIVD
Sbjct: 466 NYAKPIVD 473


>gi|45935260|gb|AAS79665.1| cryptochrome 2A apoprotein [Pisum sativum]
 gi|45935262|gb|AAS79666.1| cryptochrome 2A apoprotein [Pisum sativum]
          Length = 629

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 148/474 (31%), Positives = 227/474 (47%), Gaps = 33/474 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL  + +
Sbjct: 7   IVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
           SL   G      +    D ++  L       + TK+ +N  Y+ ++ VR   + EK ++ 
Sbjct: 65  SLKSLGAKLVLIKT---DSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVEL 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  KS++  +L  P  + +     +  + PF +  +   ++      P   I   G V 
Sbjct: 122 GISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKVE 181

Query: 190 PSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             +I         + P  A+    +  G  NA   L +F  +++  Y + R       TS
Sbjct: 182 RCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGGDSTS 241

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFS---WLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ +   + + +    +  S G  S   +L  +  RE+ R+L   +P
Sbjct: 242 LLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLCFNFP 301

Query: 300 ----SVCMGK-PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                  +G   F PW      N D    + W+QG TG+P++DA MR+L   GWMHNR+R
Sbjct: 302 FTHERALLGHLSFFPW------NADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ +    D     R+ +P I 
Sbjct: 356 VIVSSFAVKMLLLPWKWGMKYFWDTLLDADLECDILGWQYISGCLPDGHELERLDDPEIL 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462
           G +FDP+G ++R WLPEL  +PT++IH    AP S L  + + L  NYP PI+D
Sbjct: 416 GAKFDPEGEYVRQWLPELARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIID 469


>gi|329941848|ref|ZP_08291113.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus
           M045]
 gi|329299565|gb|EGG43465.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus
           M045]
          Length = 468

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/464 (30%), Positives = 216/464 (46%), Gaps = 56/464 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA------RQSHF 60
           M   +V    DLR+ D+  L AA   + A V+ +F+      R   + A       +  F
Sbjct: 1   MHTSVVLFTADLRLHDHPPLRAALDRASA-VVPLFV------RDRAVDAAGFAVPNRLAF 53

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L  +   L ++G            D +E +     +    ++        +  RR+
Sbjct: 54  LADCLRDLDAGLRERGGRLVVRSG----DLVEEVCRVAAEADAGEVHMASDVSAHAHRRE 109

Query: 121 KLLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---R 175
             L   L+         D+V  +  PGS+       + V+TP+ +   +   ++ L   R
Sbjct: 110 DRLRTALEAVGRGLVVHDTVTTVRAPGSVTPGGRDHFAVFTPYFRRWSEQRTRSVLDAPR 169

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKE--------- 225
            +PVP     G   P +     D     + P     GE+     L  + +          
Sbjct: 170 RVPVPEG--IGSEEPPDRRELSD-----LSPGLARGGEREGRARLAAWLRGGSGDGKGAG 222

Query: 226 ---KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
               V  Y ++ D  A   TS+LSP+L  G LSP +    ++E     L  P  GA +++
Sbjct: 223 VVGDVGEYEDRHDDLAGDATSRLSPHLHFGTLSPVEV---VRE--AGGLGGP--GAEAFV 275

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAA 339
            +L WR+F+R ++A  P+          T    W  +      +QAW++G TG+P++DAA
Sbjct: 276 RQLAWRDFHRQVLAARPAAAHEDYR---TRHDRWRTERAAREEVQAWREGRTGYPVVDAA 332

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQL   GWMHNR R++TASFL K L VDWR+G  +F+  L+DGDLA+N   WQW A TG
Sbjct: 333 MRQLRHEGWMHNRGRLLTASFLAKTLYVDWRVGARHFLDLLVDGDLANNQMNWQWVAGTG 392

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
            DS P  R+ NP +QG+RFDP+G ++R W+PEL  VP   +H P
Sbjct: 393 TDSRPN-RVLNPVVQGRRFDPEGAYVRRWVPELAEVPGAGVHEP 435


>gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
           IMS101]
 gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
           IMS101]
          Length = 498

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 156/510 (30%), Positives = 257/510 (50%), Gaps = 55/510 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHF 60
           + +V ++W RNDLRI D++ LY A    +A++I ++   P Q+ Q           ++ F
Sbjct: 2   SQNVIILWYRNDLRIHDHEPLYKAL-KVNAQIIPIYCLDPRQFSQTDFGFPKTGVFRAKF 60

Query: 61  IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTK-LFYNRQYEINE 116
           +  S+  ++ +L + G   ++FQ        D  E +     QQ   K +F++++    E
Sbjct: 61  LLESIADLRNNLQKLGSNLVIFQ--------DKPEIVIPRLAQQLSAKSVFFHQEVTELE 112

Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           V+ ++L+ + L Q  V  KSF    L  P  +     Q+ +++T FRK + +N       
Sbjct: 113 VKVERLVHQALKQIGVRLKSFWGHTLYHPDDLPFEIKQLPELFTTFRKDVEKNSSVNPTF 172

Query: 176 SLP-----VPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYY 229
           S+P     +P I +    T S++      P  +   + F  GE  A   ++ +  ++ Y 
Sbjct: 173 SIPKKLSSLPKIDVGELPTLSDL-NLEKPPLNSQGVLEFKGGETAAKERVKNYFWQQDYL 231

Query: 230 YVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWL-NE 284
            V +     + G   +S+ SP+L++G LSPR  +  +KE E+  +    K+ +  WL  E
Sbjct: 232 KVYKETRNGMLGANYSSKFSPWLALGCLSPRYIYEEVKEYEYQRV----KNQSTYWLIFE 287

Query: 285 LIWREFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
           LIWR+++R +        F+ S   G   IPW E  +W K     + W+ G TGFP++DA
Sbjct: 288 LIWRDYFRFICQKHGNKIFHKSGLQGIA-IPWQE--DWEK----FRKWQAGQTGFPLVDA 340

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            MR+L   G+M NR R   ASFL K+L ++W++G E+F S L+D D+ SN G W + A  
Sbjct: 341 NMRELLATGFMSNRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGV 400

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------L 452
           GND    FR FN   Q K +DP+G +++HWLPEL  VP   +H P   L          +
Sbjct: 401 GNDGRG-FRYFNIPKQAKDYDPEGKYVKHWLPELGKVPPAKVHEPWKLLPVEQDRFGVKI 459

Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
            ++YP PI+D  ++      +Y  A + +L
Sbjct: 460 GVDYPEPIIDLWQSVKENEKKYNRALQMTL 489


>gi|1468975|gb|AAB04996.1| AT-PHH1 [Arabidopsis thaliana]
          Length = 612

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 235/488 (48%), Gaps = 58/488 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      Q  N   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 66  SLKALGSDLTLIQTHNTISAI--LD--CIRVTGPTKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +     R +P+ A  
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 184 ---LTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +    +    + P  A+    +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R   QC       W R K    EE  DL ++           +
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRG----------I 291

Query: 286 IWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             RE+ R++   +P     S+     F PW      + D    +AW+QG TG+P++DA M
Sbjct: 292 GLREYSRYICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGM 345

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   L D DL  +  GWQ+ + +  
Sbjct: 346 RELWATGWMHNRIRVIVSSFGVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIP 405

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 406 DGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465

Query: 455 NYPLPIVD 462
           NY  PIVD
Sbjct: 466 NYAKPIVD 473


>gi|282916029|ref|ZP_06323792.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283769853|ref|ZP_06342745.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319977|gb|EFB50324.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460000|gb|EFC07090.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 457

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 181/348 (52%), Gaps = 34/348 (9%)

Query: 142 LPPGSILNHALQMYKVYTPFRKA-----LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
                 +N   + YKV+T F K       I+++   DL  L    I       P+N+   
Sbjct: 129 FKASKTMNKQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELIDIVI-----AAPNNLK-- 181

Query: 197 FDYPFQAIDPMFPIGEQNALHILR--KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGV 253
                   D     G   A    +  +F +  +  Y   R+ +P I  TSQLS  L+ G+
Sbjct: 182 --------DVQIDAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEIL-TSQLSIALAYGL 232

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           L   + +N L   + +     +S   +++ ELI+REFY  LM  YP     + F P    
Sbjct: 233 LDIIEIFNDLLARYEE----DESNYEAFIRELIFREFYYVLMTQYPESA-HQSFKPKYRH 287

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
           I W+++    +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL KDL ++W  GE
Sbjct: 288 INWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTKDLFINWTWGE 347

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           ++F   L+D D  SN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  +I+ +LP LN
Sbjct: 348 DFFRKYLIDYDATSNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPVLN 407

Query: 434 NVPTQYIHAPH---SWLDKNDLSL--NYPLPIVDHKKACHHTLNQYYA 476
            +  +Y+H  H   S L K  + L  +YP  IVDH++     L  + A
Sbjct: 408 QIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455


>gi|21327675|gb|AAC37438.2| CPH1 [Chlamydomonas reinhardtii]
          Length = 1008

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 233/483 (48%), Gaps = 41/483 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ D+     A   +   VI VFI  PE+  Q         +   SL+ +Q+
Sbjct: 9   VVWFRRDLRV-DDNPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVDLQQ 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+  G      + +   DS   L     +     +F+N  Y+   + RD   ++ L   
Sbjct: 68  ALAALGSRLVIRRST---DSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGLTAA 124

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRL 184
            +  ++F+  +L  P  +L+   Q Y  +  F  ++         R++PVP     +   
Sbjct: 125 GVAHRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSV---------RAMPVPPPFPVSAPA 175

Query: 185 TGPVTPSNIPR--------FFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVE 232
           + P  P+ +P         FF    +A           G   A+  L  F  E++  +  
Sbjct: 176 SMPAVPAAVPSMTVAEVDWFFTPEQEASSDQLKFKWKPGVGGAISELEHFLAERLTEFEH 235

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWRE 289
            R       TS+LSP++ IG +S R  + R+++   + L      A S   +L ++ +RE
Sbjct: 236 DRAKVDRDSTSRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R+L   +P +   +  +       W  D H  +AW+QG TG+PI+DAAMRQL + GW 
Sbjct: 296 YSRYLAFHFPFIHE-RSLLGHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWC 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR R++ ASFLVKDLL+ W+ G +++    +D DL  +  GWQ+ +   +D+ P+  + 
Sbjct: 355 HNRGRVVAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMM 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDH 463
           +   + +RFDP G ++R WLP L+ +PT+YIH    AP S L   D+ L  NYPLPI+  
Sbjct: 415 DLEKEARRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPIITR 474

Query: 464 KKA 466
             A
Sbjct: 475 SDA 477


>gi|54025035|ref|YP_119277.1| putative deoxyribodipyrimidine photolyase [Nocardia farcinica IFM
           10152]
 gi|54016543|dbj|BAD57913.1| putative deoxyribodipyrimidine photolyase [Nocardia farcinica IFM
           10152]
          Length = 436

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/455 (31%), Positives = 217/455 (47%), Gaps = 41/455 (9%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFIYASLLQVQKSL 72
           DLR+ DN  L AA    DA V+ +F+        H +  R    ++ F+ A++ ++   L
Sbjct: 10  DLRVHDNPVLAAARDAGDA-VVPLFVID-----AHLVPDRCPPNRARFLAAAVRELDAEL 63

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
             +G      +    D+    +D    +   T    +     +  R D L E+  +  V 
Sbjct: 64  RTRGGRLIVRRGVVADEVARVVDETGAR---TVHLADDVSGYSAARADALRERLDRRGVR 120

Query: 133 CKSFDDSVLLPPGSILNHAL--QMYKVYTPFRKALIQNLVQADL---RSLPVPAIRLTGP 187
            +    S+    G +L  A     + V+TP+ +   +   +A L     L VP +     
Sbjct: 121 LEPHPASITTVDGDVLRPATGRDHFAVFTPYFRRWSEVPRRAPLPPPEDLEVPDLPSAAL 180

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            TP ++ R    P  ++      GE     +L  +    V  YVE  D  A   TS LSP
Sbjct: 181 PTPESLNRGEPSPQLSVG-----GETTGRALLDSWLAGPVDDYVETGDDLAADATSHLSP 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G LSP +  +R     VD+     +G  ++  +L WR+F+  L+A  P+V     +
Sbjct: 236 YLHFGCLSPTELLHR-----VDVG---SAGGQAFARQLAWRDFHHQLLAARPAVARHD-Y 286

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P    I W  D   L AW+   TG+PI+DAA+RQL+T GW+ NR R+I A+FL K L +
Sbjct: 287 RP--RPIRWRDDPQALAAWRSARTGYPIVDAALRQLHTEGWLPNRARLIAAAFLTKTLGL 344

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            WR G  +F+  L+D DLA+N   WQW A TG+D+ P  R FNP  Q  R+DP G ++R 
Sbjct: 345 HWRAGAGHFLHWLVDADLANNQLNWQWVAGTGSDTRPN-RGFNPLRQADRYDPDGVYVRR 403

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           W+PEL ++    IH P  W  +    ++YP PI +
Sbjct: 404 WIPELADLDGGRIHRP--WRAE----VDYPSPIAE 432


>gi|88811682|ref|ZP_01126936.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
           photoreceptor) [Nitrococcus mobilis Nb-231]
 gi|88791073|gb|EAR22186.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
           photoreceptor) [Nitrococcus mobilis Nb-231]
          Length = 479

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 141/490 (28%), Positives = 224/490 (45%), Gaps = 35/490 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ D+  L  AC  +   VI VFI  P+      + A     +  ++   ++
Sbjct: 8   LFWFRRDLRLADHPGL-VACQAARVPVIPVFILDPQT---EALGAAAKWRLGLAIASFRE 63

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            L   G  ++ +          +      C      ++ ++R Y  + + RD+ ++  L+
Sbjct: 64  RLQAIGSDLILRRGPAKETLLELLEETGAC------EVHWSRNYTPDAIERDQEVKTALK 117

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTP----FRKALIQNLVQADLRSLPVPAI- 182
                  S     L+ P ++   A   ++VY+P    FR   I  +V  ++ +LP PA+ 
Sbjct: 118 RAGRHALSHPGHTLIEPWAVSPAASDHFRVYSPYWRAFRTIEIAPVVP-EIEALPAPALW 176

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             +  +    +    +   + +     +GEQ AL     F  E    Y   RD   +  T
Sbjct: 177 PRSDNLAGWRLDAAMNRGAEVVARYACVGEQAALERFAAFLDEPWSAYRNGRDRLDLAAT 236

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS  L+ G +SPR  W+ +     D     + G  ++L EL+WREF  HL+   P + 
Sbjct: 237 SLLSENLTYGEISPRTIWHGVCASGGDQ----EQGGETFLKELVWREFSYHLLYHTPHIT 292

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                  W     W  D+     W++G TG P+IDAAMRQ+   G MHNR RM+ AS+L 
Sbjct: 293 QRNWRAEWN-AFPWRGDNEQAARWRKGLTGEPVIDAAMRQMYVTGTMHNRARMLVASYLT 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L+  W+IG ++F   L+D D A+N  GWQW A +G D+ P+FR+FNP  Q ++FDP  
Sbjct: 352 KHLMTHWKIGMDWFAQCLIDWDPAANALGWQWVAGSGPDAAPFFRVFNPATQAEKFDPDA 411

Query: 423 TFIRHWLPEL-----NNVPTQYIHA-PHSWLDKNDLSLNYP-LPIVDHKKACHHTLN--Q 473
            + R ++ EL           Y  A P  W    D    YP  P+++ K+     L   Q
Sbjct: 412 VYRRRYVAELAGDNPGEAALAYFDACPRHW--SLDPEQKYPEAPLIELKRGRERALEAYQ 469

Query: 474 YYAAKKQSLL 483
           +Y  K + ++
Sbjct: 470 HYVVKNKPII 479


>gi|16416405|dbj|BAB70665.1| blue-light receptor cryptochrome [Physcomitrella patens]
          Length = 727

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 227/475 (47%), Gaps = 31/475 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       V+ VF+ +P +  Q         ++  SL  ++ 
Sbjct: 6   IVWFRRDLRLEDNPALIAAARA--GTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTHLEL 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL + G      +     D +  L         T++FYN  Y+   + RD  +++ L  R
Sbjct: 64  SLKKLGSPLILRKSP---DMLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQGLSQR 120

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            ++  +F+  +L  P  + +   Q + VY  F K  +    + +   LP    RLTGP+ 
Sbjct: 121 GIVVHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPLLP--PRRLTGPIG 178

Query: 190 PS--------NIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQR---DIP 237
                      +   F+    A+    +  G   A   L  F +  +  Y   R   D  
Sbjct: 179 KIVGCNAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQKADGA 238

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIWREFYRH 293
           +   TS LSP+L  G LS R+ ++ +++  +    +  +G  + +N     L +RE+ R+
Sbjct: 239 SGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFREYSRY 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +  +   +   W  D    +AW+QG TG+P++DA MR+L   GW HNR+
Sbjct: 299 LSFHFP-FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWAHNRI 357

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ ASF VK L + WR G +YF   LLD DL  +  GWQ+ + +  D     RI NP +
Sbjct: 358 RVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIENPEV 417

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462
           +G RFDP G ++R W+PEL  +P +++H    AP S L     +L  NYP PIV+
Sbjct: 418 EGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVE 472


>gi|159487060|ref|XP_001701553.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
 gi|158271494|gb|EDO97311.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
          Length = 1008

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 233/483 (48%), Gaps = 41/483 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ D+     A   +   VI VFI  PE+  Q         +   SL+ +Q+
Sbjct: 9   VVWFRRDLRV-DDNPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVDLQQ 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+  G      + +   DS   L     +     +F+N  Y+   + RD   ++ L   
Sbjct: 68  ALAALGSRLVIRRST---DSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGLTAA 124

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRL 184
            +  ++F+  +L  P  +L+   Q Y  +  F  ++         R++PVP     +   
Sbjct: 125 GVAHRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSV---------RAMPVPPPFPVSAPA 175

Query: 185 TGPVTPSNIPR--------FFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVE 232
           + P  P+ +P         FF    +A           G   A+  L  F  E++  +  
Sbjct: 176 SMPAVPAAVPSMTVAEVDWFFTPEQEASSDQLKFKWKPGVGGAISELEHFLAERLTEFEH 235

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWRE 289
            R       TS+LSP++ IG +S R  + R+++   + L      A S   +L ++ +RE
Sbjct: 236 DRAKVDRDSTSRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R+L   +P +   +  +       W  D H  +AW+QG TG+PI+DAAMRQL + GW 
Sbjct: 296 YSRYLAFHFPFIHE-RSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWC 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR R++ ASFLVKDLL+ W+ G +++    +D DL  +  GWQ+ +   +D+ P+  + 
Sbjct: 355 HNRGRVVAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMM 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDH 463
           +   + +RFDP G ++R WLP L+ +PT+YIH    AP S L   D+ L  NYPLPI+  
Sbjct: 415 DLEKEARRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPIITR 474

Query: 464 KKA 466
             A
Sbjct: 475 SDA 477


>gi|240047725|ref|YP_002961113.1| hypothetical protein MCJ_006150 [Mycoplasma conjunctivae HRC/581]
 gi|239985297|emb|CAT05310.1| HYPOTHETICAL Deoxyribodipyrimidine photo-lyase [Mycoplasma
           conjunctivae]
          Length = 434

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 215/431 (49%), Gaps = 34/431 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAK-VIAVFIATPEQWRQHG--ISARQSHFIYASL 65
           +++     D+R+ DN  L      ++ + +   FI   +Q  +     S +   F+  +L
Sbjct: 1   MNIFLFHRDIRVEDNLGLLNLVEETNGENIFLFFIYNKKQLYEKNEYFSQKAFDFLNNAL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + + K ++   I   Y +     + IE  +      ++ +++ N+ +    + RDK L++
Sbjct: 61  INLSKKVN---INLFYAE-----NEIEVFEEILQANKIERIYINKDWSDFALARDKDLKQ 112

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAI 182
             Q + +I K F+D +L  PG ILN++   YKV+TPF    +  LV+    +LP     +
Sbjct: 113 FCQKNNIIFKEFNDYLLFRPGDILNNSNSFYKVFTPFYNNCVSKLVE----NLPTVKKTL 168

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                +  ++    F   F+     FP      L IL    K  ++ Y + R+  AI  +
Sbjct: 169 HFYTQIYKNSKSCSFLQEFKYFQTFFPNSIDQILEIL----KNNIHDYAKNRNNLAI-DS 223

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           +++SP +  G++S RQ    + +E        K+     + +LIWREFY H   F  S  
Sbjct: 224 NKISPAIRFGIISIRQLLLYVYQE-------TKNINHELIRQLIWREFYYHF-NFLASQT 275

Query: 303 MGKPFIPWTEK---IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                 PW  K   +E+N+    L+ WK+G TGFP+IDAA+++L   G+MHNR RM+ AS
Sbjct: 276 NWNFGNPWNRKFYFLEYNQADEKLKLWKEGKTGFPLIDAAIQELLQTGFMHNRARMVVAS 335

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K+L +DW  GE++F   L+D D   N+  WQW A  G D+  + RIFNP +Q K+FD
Sbjct: 336 FLTKNLFIDWHEGEKFFAQHLIDYDPIINHHSWQWVAGCGVDAQLFTRIFNPILQQKKFD 395

Query: 420 PQGTFIRHWLP 430
               +I  +LP
Sbjct: 396 SNNYYISKFLP 406


>gi|103486487|ref|YP_616048.1| deoxyribodipyrimidine photolyase [Sphingopyxis alaskensis RB2256]
 gi|98976564|gb|ABF52715.1| Deoxyribodipyrimidine photo-lyase type I [Sphingopyxis alaskensis
           RB2256]
          Length = 457

 Score =  193 bits (491), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 151/478 (31%), Positives = 231/478 (48%), Gaps = 56/478 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYA 63
           M+  L+WLR DLR+ D+ AL AA       VI VFI    TP  W+   I A Q  +++ 
Sbjct: 1   MTASLLWLRQDLRVHDHPALLAAIAGG--AVIPVFILDDETPGTWK---IGAAQRWWLHH 55

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD--K 121
           SL  +  SL ++G      + +          ++    R+ +   +R+           K
Sbjct: 56  SLTALGASLKKRGSKLILRRGA----------AHTELARIARETGSRRIHATHAYEPWWK 105

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             E+RL   +     D + L  P SI+N     Y+V+TP+ + L+ ++         +P 
Sbjct: 106 HSEERLPTDIALVLHDGNYLAAPDSIVNGQGARYRVFTPWYRRLLDHMPPT------LPQ 159

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP----------IGEQNALHILRKFCKEKVYYYV 231
                   P++ PR  D     + P  P           GE+ A    R +  + +  Y 
Sbjct: 160 AAPDAVPAPASWPRSDDLADWDLLPTRPNWAAGFGAWCPGEKGAWRAARDWL-DAIGDYK 218

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            +RD PA   TS+LSP+L  G +SPR  W+ + E       +  +GA S+ +EL WRE  
Sbjct: 219 ARRDYPAQPATSRLSPHLHFGEISPRALWHAIGE-------RDDAGAESYRSELGWREHG 271

Query: 292 RHLMAFYPSVC--MGKPFI---PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            +L+   P      G+       W    + ++D     AW +G TG+P++DA MR+L   
Sbjct: 272 INLVDQMPDYADRNGRELFDRFAWRTGADADRD---FAAWTRGRTGYPVVDAGMRELWQT 328

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+RM+TASFLVK LL+DWR GE +F   LLD DL SN   WQ+ A TG D+  + 
Sbjct: 329 GWMHNRVRMVTASFLVKHLLIDWRRGERWFWDTLLDADLGSNAMNWQYVAGTGVDAPVFS 388

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           RI +P +Q +RF     ++R  +PEL ++    I A H    ++  +  YP P++ H+
Sbjct: 389 RIMSPLLQCERF-AMADYVRAHVPELAHLSDAEIAASHG---RDSGAPGYPEPLIGHE 442


>gi|323463244|gb|ADX75397.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 474

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 173/337 (51%), Gaps = 19/337 (5%)

Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA 203
           P    N   Q Y+++T F KA  Q+L     +S  +  +        +     FD   + 
Sbjct: 131 PSKTFNQQHQPYQIFTYFYKANRQHLAHTPQKSTQLKQLAQYAAKGMNQSDLKFD---KH 187

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
            D      E  A      F   ++  Y +  D       S LS YL+ G+L  R+  N L
Sbjct: 188 TDE-----EACARQSWNHFLNHEITLYSQLADDITRNNISGLSRYLAYGLLDIREVINHL 242

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            E +       ++   S++ EL++REFY  LM  YP     + F      +EW++     
Sbjct: 243 LEGYD----SDENSYESFIRELMFREFYYVLMTQYPDAAT-QSFSVKYRNMEWSERQSHF 297

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +AWK G TG+PIIDAAM++L   G+MHNRLRMI + FL K L ++W  GE +F   L+D 
Sbjct: 298 EAWKNGETGYPIIDAAMKKLLRTGYMHNRLRMIVSQFLTKHLFMNWTWGEAHFRRYLIDY 357

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD  G FI+  L  L +V  +YIH P
Sbjct: 358 DNASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDAMGDFIKEQLQILKDVKPKYIHNP 417

Query: 444 HSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474
             ++       +  +  +YP  IV+HK++  + + Q+
Sbjct: 418 SQYVTAIQQNHQIKIGEDYPKAIVNHKESRDYVMQQF 454


>gi|82750393|ref|YP_416134.1| DNA photolyase [Staphylococcus aureus RF122]
 gi|82655924|emb|CAI80328.1| probable DNA photolyase [Staphylococcus aureus RF122]
          Length = 459

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 124/343 (36%), Positives = 180/343 (52%), Gaps = 34/343 (9%)

Query: 142 LPPGSILNHALQMYKVYTPFRKA-----LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
                 +N   + YKV+T F K       I+++   DL  L    I       P+N+   
Sbjct: 131 FKASKTMNQQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELIDIVI-----AAPNNLK-- 183

Query: 197 FDYPFQAIDPMFPIGEQNALHILR--KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGV 253
                   D     G   A    +  +F +  +  Y   R+ +P I  TSQLS  L+ G+
Sbjct: 184 --------DVQIGAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEIL-TSQLSIALAYGL 234

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           L   + +N L   + +     +S   +++ ELI+REFY  LM  YP     + F P    
Sbjct: 235 LDIIEIFNDLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPESA-HQSFKPKYRH 289

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
           I W+++    +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL K+L ++W  GE
Sbjct: 290 INWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTKNLFINWTWGE 349

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           ++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  +I+ +LP LN
Sbjct: 350 DFFRKYLIDYDSASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPVLN 409

Query: 434 NVPTQYIHAPH---SWLDKNDLSL--NYPLPIVDHKKACHHTL 471
            +  +Y+H  H   S L K  + L  +YP  IVDH++     L
Sbjct: 410 QIDAKYLHDTHQNESELFKQGIELGRHYPKQIVDHQEKRSQVL 452


>gi|157874739|ref|XP_001685786.1| DNA repair enzyme; Deoxyribodipyrimidine photolyase [Leishmania
           major strain Friedlin]
 gi|68128859|emb|CAJ06003.1| putative deoxyribodipyrimidine photolyase [Leishmania major strain
           Friedlin]
          Length = 541

 Score =  193 bits (490), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 155/541 (28%), Positives = 235/541 (43%), Gaps = 100/541 (18%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATP---EQWRQHGISARQ 57
           T    V L   R DLR+ DN  L A C  +  + I V   F   P   ++ R        
Sbjct: 22  TEREEVALFLFRRDLRVVDNTGLQALCDEAVRRSIPVLPAFFFNPIQCDKKRNAYFGDAF 81

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ------RVTKLFYNRQ 111
             F   SL+ +  +    G +            +   D  CL++       V  L +N  
Sbjct: 82  FQFFCESLVDLDGAAQLNGGLV----------CLRGSDEDCLRRIRDSGYEVKVLGFNED 131

Query: 112 YEINEVRRDKLLEKRL-QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPF-------- 161
           Y    + RD+LL     +  ++C +   D  L P   ++  + Q Y V+TPF        
Sbjct: 132 YTPFALARDRLLRDYADKQGIVCVTGPHDYSLRPLDEVVKDSEQPYSVFTPFYNKFTAEH 191

Query: 162 -RKA---LIQNL--VQADLRSLPVPAIR--LTGP-VTPSNIPRFFDYPFQAIDPMFPIGE 212
            RK    L+ N+  VQA L S P   +   L  P +  +++P+  D+           G 
Sbjct: 192 ARKVAVPLMVNVSKVQAMLVSQPKKCLEHHLVDPALVYTHMPQVQDHG----------GR 241

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
              +   R  C E++  Y + RD  A   TS LSP++  G +S R+ W+          +
Sbjct: 242 TEGMK--RLACVERLKQYADVRDDIAGDRTSHLSPHMKCGTVSTREVWH--------ASV 291

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTE 312
           +      ++  +L+WREFY  L    P +  G+                    PF P  +
Sbjct: 292 QALGTGHAFTRQLVWREFYAMLAFTRPRLLQGQLNSFIGQQDIVKATQPKQNAPFQPLYD 351

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
             +W+  +   +A+K+G TG P++DAA+R L   GW HNR R++ ++F VK L +DWR  
Sbjct: 352 NYKWSWKAEHFEAFKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWREC 411

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           E +F +  +D D+ASNNGGW W++  G D+ PYFR FN   Q +RFDP   FI  W+PEL
Sbjct: 412 ERWFATVAVDYDVASNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPEL 471

Query: 433 NNVPTQYIH--------------APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
             VP   +H              A HS      +   +   +YP PIVD K A    + +
Sbjct: 472 AKVPPSVVHHWEEYCAKARGRATATHSRKRSGQVKAKEYPTSYPAPIVDIKAATKAIIEE 531

Query: 474 Y 474
           +
Sbjct: 532 F 532


>gi|302851497|ref|XP_002957272.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f.
           nagariensis]
 gi|300257367|gb|EFJ41616.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f.
           nagariensis]
          Length = 914

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 142/474 (29%), Positives = 235/474 (49%), Gaps = 23/474 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA + + A VI VFI  PE+  Q         +   SL+ +Q+
Sbjct: 17  VVWFRRDLRVDDNPALEAALNAA-ATVIPVFIWAPEEEGQFQPGRCSRWWTKHSLVDLQQ 75

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+  G      + +   DS   L     + R   +F+N  Y+   + RD   ++ L   
Sbjct: 76  ALAALGSRLIIRRST---DSTAELLKVVGEVRAEAVFFNHLYDPISLMRDHDCKRGLAAA 132

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  ++F+  +L  P  +L+   Q Y  +  F  ++    V          A+       
Sbjct: 133 GVAHRTFNGDMLYEPWEVLDVNKQPYSTFDDFWNSVRAMTVPPPFPMAAPAAMPPVPAFV 192

Query: 190 PSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           PS +    D+ F A        +   +  G   A+  L +F  E+++ +   R       
Sbjct: 193 PSLMVSEVDWFFTAEQEASSDQLKFKWKPGVGGAIAELERFVTERLHVFEHDRAKVDRDS 252

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKE---EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           TS+LSP++ IG +S R  + R+++   E++   +        +L ++ +RE+ R+L   +
Sbjct: 253 TSRLSPWIHIGSISVRYIFYRIRQCQAEWLAAGVDRTRSCDDFLQQVGYREYSRYLSFHF 312

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +   +  +       W  D H  +AW+QG TG+PI+DAAMRQL + GW HNR R++ A
Sbjct: 313 PFI-HERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRARVVAA 371

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK+LL+ W+ G +++    +D DL  +  GWQ+ +   +D+ P+  + +   + +RF
Sbjct: 372 SFLVKNLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEARRF 431

Query: 419 DPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           DP G ++R WLP L+ +PT+YIH    AP   L   D+ L  NYP PI+ H  A
Sbjct: 432 DPDGEYVRRWLPVLSRLPTEYIHGPWKAPPQVLAAADVELGCNYPAPIISHNDA 485


>gi|146097530|ref|XP_001468129.1| DNA repair enzyme; Deoxyribodipyrimidine photolyase [Leishmania
           infantum]
 gi|134072496|emb|CAM71209.1| putative DNA repair enzyme [Leishmania infantum JPCM5]
          Length = 541

 Score =  192 bits (489), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 146/532 (27%), Positives = 224/532 (42%), Gaps = 82/532 (15%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATP---EQWRQHGISARQ 57
           T    V L   R DLR+ DN  L A C  +  + I V   F   P   ++ R        
Sbjct: 22  TVREEVALFLFRRDLRVVDNTGLQALCDEAARRFIPVLPAFFFNPIQCDKKRNPYFGDAF 81

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ------RVTKLFYNRQ 111
             F   SL+ +  +    G +            +   D  CLQ+       V  L +N  
Sbjct: 82  FQFFCESLIDLDGAAQLNGGLV----------CLRGSDEDCLQRIRDSGYEVKVLGFNED 131

Query: 112 YEINEVRRDKLLEKRL-QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
           Y    + RD+LL     +  ++C +   D  L P   ++ ++ Q Y V+TPF        
Sbjct: 132 YTPFALARDRLLRAYADKQGIVCVTGPHDYSLRPLDEVVKNSEQPYSVFTPFYNKFTAEH 191

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--------ILRK 221
            +     LPV   ++   +  S   +   +    +DP         +         + R 
Sbjct: 192 ARRVAVPLPVNVSKVQSMLV-SRPKKCMGH--HLVDPALVYAHMPQVQDHGGRTEGLKRL 248

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
            C E++  Y + RD  A   TS LSP++  G +S R+ W+          ++       +
Sbjct: 249 ACVERLKQYADARDDIAGDRTSHLSPHMKCGTVSTREVWH--------ASVQALGTGHPF 300

Query: 282 LNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSH 321
             +L+WREFY  L    P +  G+                    PF P  +  +W+  + 
Sbjct: 301 TRQLVWREFYAMLAFTRPRLLQGQLNSFIGQQDIVKATQPKQNAPFQPSYDNFKWSWKAE 360

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             +A+K+G TG P++DAA+R L   GW HNR R++ ++F VK L +DWR  E +F +  +
Sbjct: 361 HFEAFKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAV 420

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D A+NNGGW W++  G D+ PYFR FN   Q +RFDP   FI  W+PEL  VP   +H
Sbjct: 421 DYDAANNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVH 480

Query: 442 --------------APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
                         A HS       +  +   +YP PIVD K A    + ++
Sbjct: 481 HWEGYCARARGKATATHSRKRSGQGNAEEYPTSYPAPIVDIKAATKAVVEEF 532


>gi|156354106|ref|XP_001623243.1| predicted protein [Nematostella vectensis]
 gi|156209922|gb|EDO31143.1| predicted protein [Nematostella vectensis]
          Length = 524

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 153/514 (29%), Positives = 237/514 (46%), Gaps = 47/514 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GIS 54
           M  +      +  LRNDLR  DN+AL  A  N+D  V+ ++   P+ ++          +
Sbjct: 1   MATSKTQKTVICLLRNDLRYHDNEALLWAHKNADF-VLPLYCFDPDHYKTTWRFSLPKTA 59

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             ++ F+  S+  ++ +L   G      QC   +   +  +       VT + + ++   
Sbjct: 60  QYRAKFLLESVTDLRSTLQIHGSNLIIRQCQPLEAVTKLTELLKPVAPVTSIVFQQEVTY 119

Query: 115 NEVRRDK-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQN 168
            E+  +K L+E   +  +   +   S L     I   A  +   YT FRK +     ++N
Sbjct: 120 EELNVEKALVEFCKKSGIHMHTIWGSTLFHKDDIPYKAKTVPDTYTQFRKGVENQSTVRN 179

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFPI--GEQNALHILRKFC- 223
           L+       P+P ++      P       D   + +D    FP   GEQ AL  L  +  
Sbjct: 180 LIDMPKNLKPLPPVKGELGTIPDLKSLLNDSEIKEVDQRSAFPFMGGEQEALSRLGSYLW 239

Query: 224 -KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
             + V  Y E R+ +     +++LSP+L+ G LSPR  ++R+K+   + +       +  
Sbjct: 240 GTDSVAKYKETRNGLLGENYSTKLSPWLANGSLSPRMVYHRIKQYEEERVAN--HSTYWV 297

Query: 282 LNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           L ELIWR++++ +        FY S  MGK        + W  D    + W +G TG P 
Sbjct: 298 LFELIWRDYFKFVCLKYGDRVFYRSGIMGK-------SLPWKHDKMTFKLWCEGKTGVPF 350

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DA MR+L   GWM NR R   ASFL+KDL +DWR G E+F S LLD D+ SN G W +A
Sbjct: 351 VDANMRELKETGWMSNRGRQNVASFLIKDLGLDWRYGAEWFESLLLDHDVCSNYGNWNYA 410

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----- 450
           A  GND     R FN   QG  +DP G +I+ W+PEL  +P   +H P  W  K      
Sbjct: 411 AGIGNDPRE-GRKFNMVKQGLDYDPDGDYIKTWVPELAKIPGAKVHVP--WTLKPGELRS 467

Query: 451 ---DLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
              +L + YP PIV   +   HT ++  + KK S
Sbjct: 468 SGVELGVTYPNPIVIAPEWARHT-SKTISGKKPS 500


>gi|224112573|ref|XP_002332746.1| predicted protein [Populus trichocarpa]
 gi|222833074|gb|EEE71551.1| predicted protein [Populus trichocarpa]
          Length = 646

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 147/487 (30%), Positives = 234/487 (48%), Gaps = 54/487 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL  
Sbjct: 4   SKTIVWFRRDLRIEDNPALAAAAR--DGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61

Query: 68  VQKSLSQKG----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122
           + +SL   G    ++  +   +   D IE + +       T++ +N  Y+ ++ VR   +
Sbjct: 62  LGQSLKSLGAELVLIKTHSTVAALLDCIETIGA-------TRVVFNHLYDPVSLVRDHNI 114

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            EK ++  +  +S++  +L  P  I +     +  +  +    +   ++      P   +
Sbjct: 115 KEKLVELGISVQSYNGDLLYEPWEIYDERGHAFTTFEAYWDRCLHMQMEPVSHLPPWRLV 174

Query: 183 RLTGPVTPSNIPRFF--DYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDI 236
              G V   ++      D   ++ + +       G  NA   L +F ++ +  YVE R +
Sbjct: 175 PAAGTVMKCSVEELGLEDEAEKSSNSLLGRGWSPGWSNADKALTEFAEQHLIDYVESR-L 233

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRL--------KEEFVDLLIKPKSGAFSWLNELIWR 288
                TS LSPYL  G LS R+ +  +        KEE  +L+ K     F  L  +  R
Sbjct: 234 KVGTSTSLLSPYLHFGELSVRKVFQCVQLKQLLWAKEE--NLMGKESVTLF--LRSIGLR 289

Query: 289 EFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           E+ R+L   +P     S+     + PW      N +    +AW+QG TG+P++DA MR+L
Sbjct: 290 EYSRYLCFNFPFTHERSLLRNLKYFPW------NDNQVHFKAWRQGRTGYPLVDAGMREL 343

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GW+HN++R+I +SF VK LL+ WR G +YF   LLD DL S+  GWQ+ + +  D+ 
Sbjct: 344 WATGWIHNKIRVIVSSFAVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDAH 403

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--------LDKNDLSLN 455
              R+ NP IQG +FDP+G ++R WLPEL  +P ++IH  H W            +L +N
Sbjct: 404 ELERLDNPEIQGSKFDPEGEYVRRWLPELARMPAEWIH--HPWDASIAVLKAAGVELGIN 461

Query: 456 YPLPIVD 462
           YP PI+D
Sbjct: 462 YPKPIID 468


>gi|21282382|ref|NP_645470.1| hypothetical protein MW0653 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|300912677|ref|ZP_07130120.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|21203819|dbj|BAB94518.1| MW0653 [Staphylococcus aureus subsp. aureus MW2]
 gi|300886923|gb|EFK82125.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 457

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 177/340 (52%), Gaps = 18/340 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
                 +N   + YKV+T F K     L   D+    + +       +P ++  F D  F
Sbjct: 129 FKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
            +      I EQN     + F  + +  Y   RD      TSQLS  L+ G+L   + +N
Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L   + +     ++   +++ ELI+REFY  LM  YP     + F P   +I+W+++  
Sbjct: 241 DLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPKYRQIKWSQNEA 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
              AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW  GE++F   L+
Sbjct: 296 DFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ +LP  N +  +Y+H
Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415

Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
                    +    +L  +YP  IVDH++     L  + A
Sbjct: 416 DTQRNESNLFEQGIELGSHYPRQIVDHQEKRTQVLATFKA 455


>gi|323476401|gb|ADX81639.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus HVE10/4]
          Length = 433

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 147/456 (32%), Positives = 218/456 (47%), Gaps = 51/456 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +  L + V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F      N+V+      PV        
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              +N   ++         + P  GE+       K  +       +++D  A    + LS
Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G LS R+ +  L +            + + + +L WR+FY  L+A+Y      +P
Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +  LLQAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK LL
Sbjct: 264 LKREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLL 323

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +++
Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVK 381

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
            W+ EL +  ++ IH  + +  K     NYP PIVD
Sbjct: 382 RWVDELESYDSEIIHNAYKYTLK-----NYPKPIVD 412


>gi|184201932|ref|YP_001856139.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201]
 gi|183582162|dbj|BAG30633.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201]
          Length = 441

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 204/427 (47%), Gaps = 25/427 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  R+DLR+TD+ AL+ A  + +  V+ +++   E      +      +++ SL  +  
Sbjct: 4   VVLFRDDLRVTDHPALHEAVSHGE-PVVCLYVLDEESEGVRPLGGAAKWWLHHSLTSLAS 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRLQH 129
            LS+ G+     +      + + +     +    +L +NR+Y   E   D  L E   ++
Sbjct: 63  DLSELGVPLTLRRGP----AGKVVPHVVRETGADRLLWNRRYGGPERAVDAGLKEWAGEN 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V   S+  S++  P ++       Y+V+TPF +A        +       +I    P  
Sbjct: 119 GVEAHSYAGSLMFEPWTVSTQNGDPYRVFTPFWRACTSGPPPREPYPA-PSSIDHADPAP 177

Query: 190 PSN-------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            S        +P   D+    +   + +GE+ A   L +F  E++  Y + RD+PA   T
Sbjct: 178 ASEDLVDWELLPTHPDWS-GGLARTWTVGERAAHERLDEFLDERLPRYTQDRDVPARPAT 236

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSP+L  G +SP   W+   E           G F  L E+ WREF  + +  +P + 
Sbjct: 237 SGLSPHLRWGEISPYTVWHTALER------AENPGKF--LTEVGWREFSWYNLYVHPDMA 288

Query: 303 MGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             +   P  +   W   D  +L AW+ G TG P++DA M +L   G M NR+RM+ AS L
Sbjct: 289 T-ENINPKFDAFPWPPLDEDVLAAWQMGRTGIPLVDAGMHELWETGAMQNRVRMVVASLL 347

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+DWR+GE++F   L+D D ASN   WQW A  G D+ PYFRIFN   Q K+FDP 
Sbjct: 348 AKNLLIDWRLGEQWFWDTLVDADPASNPHNWQWVAGCGTDAAPYFRIFNAETQQKKFDPD 407

Query: 422 GTFIRHW 428
             ++  W
Sbjct: 408 FVYVDRW 414


>gi|304571342|dbj|BAJ15789.1| cryptochrome2 [Cardamine alpina]
          Length = 591

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 151/475 (31%), Positives = 233/475 (49%), Gaps = 38/475 (8%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +SL   G
Sbjct: 1   DLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLSHLSQSLKALG 58

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICK 134
                 +  N   +I  LD  C++    TK+ +N  Y+ ++ VR   + EK ++  +  +
Sbjct: 59  SELTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQ 114

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR---LTG 186
           SF+  +L  P  I     +    ++ + K  ++  +++ +     R +PV A        
Sbjct: 115 SFNGDLLYEPWEIYCEKGKPLTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWAC 174

Query: 187 PVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +    +    + P  A+    +  G  NA  IL +F ++++  Y +         TS L
Sbjct: 175 SIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLL 234

Query: 246 SPYLSIGVLSPR---QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--- 299
           SPYL  G +S R   QC  R+K+       +    A  +L  +  RE+ R+L   +P   
Sbjct: 235 SPYLHFGEISIRRVFQC-ARMKQIIWAKNSEGDESADLFLKGIGLREYSRYLCFNFPFTH 293

Query: 300 --SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
             S+     F PW      + D    +AW+QG TG+P++DA MR+L   GWMHNR+R+I 
Sbjct: 294 EQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP IQG +
Sbjct: 348 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAK 407

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVDHKKA 466
           FDP+G +IR WLPEL  +P+++IH    AP + L  +  +L  NY  PIVD   A
Sbjct: 408 FDPEGDYIRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTA 462


>gi|6594296|dbj|BAA88423.1| blue light photoreceptor [Adiantum capillus-veneris]
 gi|6594300|dbj|BAA88425.1| blue light photoreceptor [Adiantum capillus-veneris]
          Length = 699

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 145/492 (29%), Positives = 233/492 (47%), Gaps = 31/492 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A    +VWLR DLR+ DN AL AA    +  V+ VFI +PE+ RQ         ++  SL
Sbjct: 2   AKPCTIVWLRRDLRLEDNPALCAAGRIGN--VVPVFIWSPEEERQFHPGRVSRWWLKQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +Q+  SL   G+     + +   D++  L         T++FYN  Y+   + RD  +++
Sbjct: 60  IQLDVSLRSFGVPLVMRKST---DTLGTLQELIKATGATQVFYNHLYDPISLVRDHHVKQ 116

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L Q  +  +SF+  +L  P  +LN   + +  +  + +  +    + D   LP   +  
Sbjct: 117 GLTQSGIQVQSFNGDLLYEPWEVLNDDGKPFTSFESYWQKCLNMPFEPDSPLLPPRRLTS 176

Query: 185 TGPVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                P+  P       +        +   +  G  NA   L  F    +  Y   R   
Sbjct: 177 IAGSIPTYTPEELGLEDETEKSSNALLARAWAPGWSNADRALEAFLAGPLLEYSRNRHKI 236

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-------FSWLNELIWREF 290
               TS LSP++  G +S R+ ++ ++      L+  K G+       + ++  + +RE+
Sbjct: 237 DGPTTSLLSPHMHFGEVSVRKVYHSVRRL---QLLWAKDGSKLGEESIYFFMRSIGFREY 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R+L   +P     +  +   +   W  D    +AW+QG TG+P++DA MR+L   GW+H
Sbjct: 294 SRYLSFNFP-FTHERSLLSNLKSFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R+ N
Sbjct: 353 NRVRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRMDN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHK 464
           P  +G + DP G ++R WLPEL  +PT++IH    AP + L    + L  NYP PIV+  
Sbjct: 413 PQTEGYKHDPVGEYVRRWLPELVRLPTEWIHHPWDAPPAVLRAAGVELGSNYPRPIVE-V 471

Query: 465 KACHHTLNQYYA 476
            A    L Q  A
Sbjct: 472 AAARERLRQAVA 483


>gi|304571334|dbj|BAJ15785.1| cryptochrome2 [Cardamine nipponica]
          Length = 590

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 234/475 (49%), Gaps = 38/475 (8%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +SL   G
Sbjct: 1   DLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALG 58

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICK 134
                 +  N   +I  LD  C++    TK+ +N  Y+ ++ VR   + EK ++  +  +
Sbjct: 59  SELTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQ 114

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP---VPAIRLTGPVTPS 191
           SF+  +L  P  I     + +  ++ + K  ++  +++ +   P   +P    T  V   
Sbjct: 115 SFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAATEAVWAC 174

Query: 192 NIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           +I         + P  A+    +  G  NA  IL +F ++++  Y +         TS L
Sbjct: 175 SIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLL 234

Query: 246 SPYLSIGVLSPR---QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--- 299
           SPYL  G +S R   QC  R+K+       +    A  +L  +  RE+ R++   +P   
Sbjct: 235 SPYLHYGEISVRRVFQC-ARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFPFTH 293

Query: 300 --SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
             S+     F PW      + D    +AW+QG TG+P++DA MR+L   GW+HNR+R+I 
Sbjct: 294 EQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP IQG +
Sbjct: 348 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAK 407

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVDHKKA 466
           FDP+G +IR WLPEL  +P+++IH    AP + L  +  +L  NY  PIVD   A
Sbjct: 408 FDPEGDYIRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTA 462


>gi|55377570|ref|YP_135420.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049]
 gi|55230295|gb|AAV45714.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049]
          Length = 464

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/480 (29%), Positives = 223/480 (46%), Gaps = 45/480 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  +    +H+ W + DLRI DN+ L AA   +D +V+ V++   +      I  RQ  F
Sbjct: 1   MLVSLTKCMHVFWHQRDLRIPDNRGLTAAA--ADDEVLPVYVLDTDLLAN--IGKRQKAF 56

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           + A +  ++++    G      + +  D     +D Y       +++YN  Y      R 
Sbjct: 57  LLAGVRALKQAYRDHGGELLVKKGTAVDVLSNVVDEYD----ADRVYYNEHYRPARRNRQ 112

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           + +++ L      KS  D VL+ P  + +      + Y  +         QA  +  PV 
Sbjct: 113 RRVDEALP----TKSLTDLVLVDPAGLDSQYENHSRFYDDW---------QAHHKLPPVG 159

Query: 181 A------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           +      + ++ P T   I    D P          G + A      F    +  Y + R
Sbjct: 160 SPDSGSLVDVSDPTTAPTIETEMDLPTP--------GYEGARQRYDDFLTGGIETYNDTR 211

Query: 235 DI--PAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           D    A++      S++SPYL+ G++  R+ W    +   +     +     +  EL WR
Sbjct: 212 DDMQAAVERPTSAVSRMSPYLAAGMIGIREMWRDASDRHTEATGDAQRNIQKYRYELSWR 271

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E   HL+ + P++ + + +  +  +IEW  D    +AWK G TG+P IDA MRQL   G+
Sbjct: 272 EQSYHLLYYNPTL-LSENYKTFPNRIEWENDEDNFEAWKHGETGYPFIDAGMRQLEQEGY 330

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           +HNR R   ASFL K LLVDWR G  +F  +L+D D A+N   WQW ASTG DSV   RI
Sbjct: 331 IHNRPRQNVASFLTKHLLVDWREGARHFRKRLVDHDPANNAASWQWTASTGTDSVD-VRI 389

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPH-SWLDKNDLSLNYPLPIVDHKKA 466
           F+P  Q  ++D    ++  ++PEL  VP T+ +  P  S  ++ +L+ +Y  PIVD   A
Sbjct: 390 FDPVAQMSKYDSGADYVTEYVPELRGVPSTKIVDWPTLSDGEREELAPDYYHPIVDRNAA 449


>gi|730324|sp|P40115|CRY1_SINAL RecName: Full=Cryptochrome-1; AltName: Full=Blue light
           photoreceptor
 gi|414196|emb|CAA50898.1| photolyase [Sinapis alba]
          Length = 501

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 153/486 (31%), Positives = 233/486 (47%), Gaps = 57/486 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  +++
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLRQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRLQH 129
           SL   G      +  +   +I  LD  C++    TK+ +N  Y+   + RD  ++++L  
Sbjct: 66  SLKALGSELTLIKTHSTVSAI--LD--CVRATGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR 183
           R I  +S++  + + PG        +  V     K  +   V++ +     R +P+ A  
Sbjct: 122 RGISVQSYNGDLCMSPGRYTVKRANLLLVLILTGKKCLDMSVESVVLPPPWRLMPLSAAE 181

Query: 184 LT--GPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 V    +    + P  A+    +  G  NA  IL +F ++++  Y +        
Sbjct: 182 TVWACSVEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGN 241

Query: 241 GTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKSGAFSWLNELI 286
            TS LSPYL  G +S R   QC       W R K    EE  DL ++           + 
Sbjct: 242 STSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRG----------IG 291

Query: 287 WREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
            R++ R +   +P     S+     F PW      + D    +AW+QG TG+P++DA MR
Sbjct: 292 LRDYSRIICFNFPFTHEQSLLSHLRFFPW------DADVDKFKAWRQGRTGYPLVDAGMR 345

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D
Sbjct: 346 ELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPD 405

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLN 455
                R+ NP IQG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  N
Sbjct: 406 GHELDRLDNPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTN 465

Query: 456 YPLPIV 461
           Y  PIV
Sbjct: 466 YAKPIV 471


>gi|319893699|ref|YP_004150574.1| Deoxyribodipyrimidine photolyase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317163395|gb|ADV06938.1| Deoxyribodipyrimidine photolyase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 474

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 173/337 (51%), Gaps = 19/337 (5%)

Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA 203
           P    N   Q Y+++T F KA  Q+L     ++  +  +        +     FD   + 
Sbjct: 131 PSKTFNQQHQPYQIFTYFYKANRQHLAHTPQKNTQLKQLAQYAAKGMNQSDLKFD---KH 187

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
            D      E  A      F   ++  Y +  D       S LS YL+ G+L  R+  N L
Sbjct: 188 TDE-----EAYARQSWNHFLNHEITLYSQLADDITRNNISGLSRYLAYGLLDIREVINHL 242

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            E +       ++   S++ EL++REFY  LM  YP     + F      +EW++     
Sbjct: 243 LEGYD----SDENSYESFIRELMFREFYYVLMTQYPDAAT-QSFSVKYRNMEWSERQSHF 297

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +AWK G TG+PIIDAAM++L   G+MHNRLRMI + FL K L ++W  GE +F   L+D 
Sbjct: 298 EAWKNGETGYPIIDAAMKKLLRTGYMHNRLRMIVSQFLTKHLFMNWTWGEAHFRRYLIDY 357

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD  G FI+  L  L +V  +YIH P
Sbjct: 358 DNASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDAMGDFIKEQLQILKDVKPKYIHNP 417

Query: 444 HSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474
             ++       +  +  +YP  I++HK++  + + Q+
Sbjct: 418 SQYVTAIQQNHQIKIGEDYPKAIINHKESRDYVMQQF 454


>gi|322502106|emb|CBZ37189.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 541

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 151/541 (27%), Positives = 231/541 (42%), Gaps = 100/541 (18%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATP---EQWRQHGISARQ 57
           T    V L   R DLR+ DN  L A C  +  + I V   F   P   ++ R        
Sbjct: 22  TVREEVALFLFRRDLRVVDNTGLQALCDEAARRSIPVLPAFFFNPIQCDKKRNPYFGDAF 81

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ------RVTKLFYNRQ 111
             F   SL+ +  +    G +            +   D  CLQ+       V  L +N  
Sbjct: 82  FQFFCESLIDLDGAAQLNGGLV----------CLRGSDEDCLQRIRDSGYEVKVLGFNED 131

Query: 112 YEINEVRRDKLLEKRL-QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKA----- 164
           Y    + RD+LL     +  ++C +   D  L P   ++ ++ Q Y V+TPF        
Sbjct: 132 YTPFALARDRLLRAYADKQGIVCVTGPHDYSLRPLDEVVKNSEQPYSVFTPFYNKFTAEH 191

Query: 165 -------LIQNL--VQADLRSLPVPAIR--LTGP-VTPSNIPRFFDYPFQAIDPMFPIGE 212
                  L+ N+  VQ+ L S P   +   L  P +  +++P+  D+           G 
Sbjct: 192 AHRVAVPLLVNVSKVQSMLVSQPKKRMEHHLVDPALVYAHMPQVQDHG----------GR 241

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
              L   R  C E++  Y + RD  A   TS LSP++  G +S R+ W+          +
Sbjct: 242 TEGLK--RLACVERLKQYADARDDIAGDRTSHLSPHMKCGTVSTREVWH--------ASV 291

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTE 312
           +       +  +L+WREFY  L    P +  G+                    PF P  +
Sbjct: 292 RALGTGHPFTRQLVWREFYAMLAFTRPRLLQGQLNSFIGQQDIVKATQPKQNAPFQPSYD 351

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
             +W+  +   +A+K+G TG P++DAA+R L   GW HNR R++ ++F VK L +DWR  
Sbjct: 352 NFKWSWKAEHFEAFKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWREC 411

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           E +F +  +D D A+NNGGW W++  G D+ PYFR FN   Q +RFDP   FI  W+PEL
Sbjct: 412 ERWFATVAVDYDAANNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPEL 471

Query: 433 NNVPTQYIHAPHSWL-------------------DKNDLSLNYPLPIVDHKKACHHTLNQ 473
             VP   +H    +                    +  + S +YP PIVD K A    + +
Sbjct: 472 AKVPPSVVHHWEGYCARARGKATVTHSRKRNGQGNAEEYSTSYPAPIVDIKAATKAVVEE 531

Query: 474 Y 474
           +
Sbjct: 532 F 532


>gi|49485563|ref|YP_042784.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253731313|ref|ZP_04865478.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|297208585|ref|ZP_06925014.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|49244006|emb|CAG42432.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253725054|gb|EES93783.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|296886840|gb|EFH25744.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|329729546|gb|EGG65947.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 457

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/471 (28%), Positives = 225/471 (47%), Gaps = 29/471 (6%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
           L N +   ++  L+   +     + A +   PE+      S  ++ F   +L +  +SL 
Sbjct: 6   LLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQRFYQSLH 64

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---QHR 130
            + +        ++DD I    S+C +  ++++          +    +L +R    + R
Sbjct: 65  AEKLT---PYVMSYDDII----SFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEAR 117

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +       +        +N   + YKV+T F K     L   D+    + +       +P
Sbjct: 118 IAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASP 177

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
            ++  F D  F +      I EQN     + F  + +  Y   RD      TSQLS  L+
Sbjct: 178 DDLV-FDDIAFGSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALA 229

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G+L   + +N L   + +     ++   +++ ELI+REFY  LM  YP     + F P 
Sbjct: 230 YGLLDIIEIFNDLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPK 284

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
             +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW 
Sbjct: 285 YRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWT 344

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ +LP
Sbjct: 345 WGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLP 404

Query: 431 ELNNVPTQYIHAPHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             N +  +Y+H         +    +L  +YP  +VDH++     L  + A
Sbjct: 405 IFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455


>gi|242092996|ref|XP_002436988.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
 gi|241915211|gb|EER88355.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
          Length = 654

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 231/476 (48%), Gaps = 33/476 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    +  V+ +FI  P  + Q+        ++  SL  + K
Sbjct: 8   VVWFRRDLRIHDNPALAAAAK--EGSVLPLFIWCPADYEQYYPGRCSRWWLKQSLAHLGK 65

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127
           SL   G  +V    + S     +E +  +C+    T++ YNR Y+ I+ V  DK+  +  
Sbjct: 66  SLELLGCPLVLIRAEDSTLATLLECV--HCIS--ATRVVYNRLYDPISLVLDDKIKNELS 121

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAI 182
            H +  +SF+  +L  P  + +   Q +  +  + +  +   ++     A  R +  P +
Sbjct: 122 AHGISVQSFNGDLLYEPWDVYDENGQAFTSFNKYWEKCMNVPIEISQYLAPTRLVAAPGL 181

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIPA 238
                 +  ++        ++ + +       G +NA ++L +F    +  Y +      
Sbjct: 182 ANVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFLSCGLLEYSKHGMKVG 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSPYL  G LS R+ +  +    V    + KS A      +L  + +RE+ R+L
Sbjct: 242 GTTTSLLSPYLHFGELSVRKVYQLVTMHHVKWQNEGKSEAEESVRLFLRSIGFREYSRYL 301

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     + F+   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R
Sbjct: 302 CFNFP-FTHERSFLGNLKHYPWLLDEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 360

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK L + W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +Q
Sbjct: 361 VIVSSFAVKCLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 420

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVD 462
           G+++DP G ++R W+PEL  +PT++IH P  W   N        +L  NYP PIV+
Sbjct: 421 GQKYDPDGEYVRTWIPELARMPTEWIHCP--WSAPNSILQVAGVELGFNYPKPIVE 474


>gi|304571332|dbj|BAJ15784.1| cryptochrome2 [Cardamine nipponica]
 gi|304571336|dbj|BAJ15786.1| cryptochrome2 [Cardamine nipponica]
 gi|304571338|dbj|BAJ15787.1| cryptochrome2 [Cardamine nipponica]
 gi|304571340|dbj|BAJ15788.1| cryptochrome2 [Cardamine nipponica]
          Length = 590

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 149/475 (31%), Positives = 234/475 (49%), Gaps = 38/475 (8%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +SL   G
Sbjct: 1   DLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALG 58

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICK 134
                 +  N   +I  LD  C++    TK+ +N  Y+ ++ VR   + EK ++  +  +
Sbjct: 59  SELTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQ 114

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR---LTG 186
           SF+  +L  P  I     + +  ++ + K  ++  +++ +     R +PV A        
Sbjct: 115 SFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWAC 174

Query: 187 PVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +    +    + P  A+    +  G  NA  IL +F ++++  Y +         TS L
Sbjct: 175 SIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLL 234

Query: 246 SPYLSIGVLSPR---QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--- 299
           SPYL  G +S R   QC  R+K+       +    A  +L  +  RE+ R++   +P   
Sbjct: 235 SPYLHYGEISVRRVFQC-ARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFPFTH 293

Query: 300 --SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
             S+     F PW      + D    +AW+QG TG+P++DA MR+L   GW+HNR+R+I 
Sbjct: 294 EQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP IQG +
Sbjct: 348 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAK 407

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVDHKKA 466
           FDP+G +IR WLPEL  +P+++IH    AP + L  +  +L  NY  PIVD   A
Sbjct: 408 FDPEGDYIRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTA 462


>gi|258454058|ref|ZP_05702030.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A5937]
 gi|257863923|gb|EEV86679.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A5937]
          Length = 457

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 177/340 (52%), Gaps = 18/340 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
                 +N   + YKV+T F +     L   D+    + +       +P ++  F D  F
Sbjct: 129 FKASKTMNQQGEPYKVFTSFYRKWRSYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
            +      + EQN     + F  + +  Y   RD      TSQLS  L+ G+L   + +N
Sbjct: 188 GSS----QVIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L   + +     ++   +++ ELI+REFY  LM  YP     + F P   +I+W+++  
Sbjct: 241 DLLARYDE----DEANHEAFIRELIFREFYYVLMTQYPETSY-QAFKPKYRQIKWSQNEA 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
              AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW  GE++F   L+
Sbjct: 296 NFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ +LP  N +  +Y+H
Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415

Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
                    +    +L  +YP  +VDH++     L  + A
Sbjct: 416 DTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455


>gi|49482947|ref|YP_040171.1| DNA photolyase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257424810|ref|ZP_05601237.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427478|ref|ZP_05603877.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430109|ref|ZP_05606493.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432811|ref|ZP_05609171.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435715|ref|ZP_05611763.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903318|ref|ZP_06311209.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905098|ref|ZP_06312956.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908075|ref|ZP_06315906.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910335|ref|ZP_06318139.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282913528|ref|ZP_06321317.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282923446|ref|ZP_06331126.1| DNA photolyase [Staphylococcus aureus subsp. aureus C101]
 gi|283957520|ref|ZP_06374973.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293500575|ref|ZP_06666426.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509521|ref|ZP_06668232.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293524107|ref|ZP_06670794.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295427267|ref|ZP_06819902.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590384|ref|ZP_06949023.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49241076|emb|CAG39754.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272380|gb|EEV04503.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275671|gb|EEV07144.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279306|gb|EEV09907.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282226|gb|EEV12361.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284906|gb|EEV15025.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314314|gb|EFB44704.1| DNA photolyase [Staphylococcus aureus subsp. aureus C101]
 gi|282322560|gb|EFB52882.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325727|gb|EFB56035.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327740|gb|EFB58022.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331923|gb|EFB61434.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282596273|gb|EFC01234.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus C160]
 gi|283790971|gb|EFC29786.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290921070|gb|EFD98131.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095580|gb|EFE25841.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467618|gb|EFF10133.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128655|gb|EFG58286.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576683|gb|EFH95398.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438887|gb|ADQ77958.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315194306|gb|EFU24698.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 457

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 178/341 (52%), Gaps = 20/341 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
                 +N   + YKV+T F K     L   D+    + +       +P ++  F D  F
Sbjct: 129 FKASKTMNQQGEPYKVFTSFSKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
            +      I EQN     + F  + +  Y   RD      TSQLS  L+ G+L   + +N
Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L   + +     ++   +++ ELI+REFY  LM  YP     + F     +I+W+++  
Sbjct: 241 DLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKSKYRQIKWSQNEA 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
              AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW  GE++F   L+
Sbjct: 296 DFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  +I+ +LP  N +  +Y+H
Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPIFNQIDAKYLH 415

Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476
                 + N      +L  +YP  +VDH++     L  + A
Sbjct: 416 DTQR-NESNLFELGIELGRHYPRQMVDHQEKRTQVLAAFKA 455


>gi|304571328|dbj|BAJ15782.1| cryptochrome2 [Cardamine nipponica]
 gi|304571330|dbj|BAJ15783.1| cryptochrome2 [Cardamine nipponica]
          Length = 590

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 149/475 (31%), Positives = 234/475 (49%), Gaps = 38/475 (8%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +SL   G
Sbjct: 1   DLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLRALG 58

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICK 134
                 +  N   +I  LD  C++    TK+ +N  Y+ ++ VR   + EK ++  +  +
Sbjct: 59  SELTLIKTHNTVSAI--LD--CIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQ 114

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIR---LTG 186
           SF+  +L  P  I     + +  ++ + K  ++  +++ +     R +PV A        
Sbjct: 115 SFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWAC 174

Query: 187 PVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +    +    + P  A+    +  G  NA  IL +F ++++  Y +         TS L
Sbjct: 175 SIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLL 234

Query: 246 SPYLSIGVLSPR---QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--- 299
           SPYL  G +S R   QC  R+K+       +    A  +L  +  RE+ R++   +P   
Sbjct: 235 SPYLHYGEISVRRVFQC-ARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFPFTH 293

Query: 300 --SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
             S+     F PW      + D    +AW+QG TG+P++DA MR+L   GW+HNR+R+I 
Sbjct: 294 EQSLLSHLRFFPW------DADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP IQG +
Sbjct: 348 SSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAK 407

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVDHKKA 466
           FDP+G +IR WLPEL  +P+++IH    AP + L  +  +L  NY  PIVD   A
Sbjct: 408 FDPEGDYIRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTA 462


>gi|298370358|ref|ZP_06981674.1| deoxyribodipyrimidine photolyase [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281818|gb|EFI23307.1| deoxyribodipyrimidine photolyase [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 473

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 152/492 (30%), Positives = 220/492 (44%), Gaps = 82/492 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LR+TDN AL AA       V  VF A          + RQ+ F+ AS  ++ +
Sbjct: 35  LVWFRRNLRLTDNAALAAAVRRG-LPVAGVFAA-------DAANPRQAAFLRASAAELHR 86

Query: 71  SLSQKGIVFQYHQ---------CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           +L+++GI     Q          +  D ++   D  C+     +   NR + + +     
Sbjct: 87  ALAERGIPLFVAQEAETDIPRLAAELDAAVVVADEGCMADETAR--DNRIWRVLDA---- 140

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLR---S 176
             + R   RV     +D        I++   + Y  + P+R+A ++   Q  AD R   S
Sbjct: 141 --QGRAFERV-----NDGAAFARAEIMDEHGRPYFEFAPYRQAWLRAFAQRFADRRPSES 193

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP------IGEQNALHILRKFCKEKVYYY 230
           LPV   +    + P         PF A+    P       GE        +F  + +  Y
Sbjct: 194 LPV-GFQTAFGILP---------PFPALPETAPQEWRQQGGEAAGRRQWARFAAD-IGNY 242

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
                 PA +GT ++  YL+ G LSPR+                K GA  WL+ L+ R+F
Sbjct: 243 PLMSGFPAKKGTGRVGAYLAAGCLSPREL----------AQAAAKRGAAQWLDNLVRRDF 292

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +R +M F+      +   P    I+W     +L  W+QG TGFP+IDAAMR LN  GW+H
Sbjct: 293 FRQVM-FHRPEAAAEALRPEYRGIKWPGGQDVLSRWQQGQTGFPLIDAAMRSLNATGWLH 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF- 409
             LR   A+FL + LL DWR G  +F   L D D ASN G WQ AA         F +F 
Sbjct: 352 PALRAAAAAFLCRILLADWRHGAAWFARCLTDYDPASNTGNWQEAAGV-------FGLFS 404

Query: 410 ----NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHK 464
               NP +Q ++ DP GTFIR ++PEL ++P   +HAP  WL +  +    YP P+ D  
Sbjct: 405 GGAANPVLQAQQLDPDGTFIRRYVPELAHLPKDVVHAP--WLARASVDTHGYPPPMAD-- 460

Query: 465 KACHHTLNQYYA 476
             C      Y A
Sbjct: 461 --CARQGRAYAA 470


>gi|71748528|ref|XP_823319.1| deoxyribodipyrimidine photolyase [Trypanosoma brucei TREU927]
 gi|70832987|gb|EAN78491.1| deoxyribodipyrimidine photolyase, putative [Trypanosoma brucei]
          Length = 568

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 150/485 (30%), Positives = 220/485 (45%), Gaps = 75/485 (15%)

Query: 14  LRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQW---RQHGISARQSHFIYASLLQ 67
            R D R+TDN  L      +  +   VI +F   P Q    +          F+  SL  
Sbjct: 27  FRRDFRVTDNTGLLLLIERAGKQSLPVIPLFFFNPRQCDPDKNPYFGKACFEFLCQSLKH 86

Query: 68  VQK-SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +    L  + +  +   C    D +E + S      + +L +NR       +RD  LE+ 
Sbjct: 87  LDTVQLGGRLVCLRGSDC----DCLEVVRSSGYD--IKQLGFNRDITPFARKRDLQLEEW 140

Query: 127 LQHR-VICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              R V C + + D  LLPP  + N   + Y+V++PF +A++Q    +D+++ P P    
Sbjct: 141 CVKRGVRCVTSNMDYTLLPPDVVTNKNGKPYRVFSPFYRAVLQEHF-SDIQA-PNPKATT 198

Query: 185 TGPV-TPSNIPR---------------------FFDY-PFQAIDPMFP-----IGEQNAL 216
            G + T S++                         DY    A+   FP      G    L
Sbjct: 199 IGDIFTGSHVKEDVKATVDQARRSAMAADEFSSLVDYVDLAALPQTFPELVDRGGRSEGL 258

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
             L      K Y  +   DIP  + T+ LSP+L  G +S R+         V LL   K 
Sbjct: 259 LRLASVASAKNYSAIRD-DIPGDK-TTHLSPHLKFGTISIREAMQ------VALLHLGKE 310

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEW 316
            AF+   +LIWREFY  L+   P + +G+                    PF+      +W
Sbjct: 311 HAFT--RQLIWREFYSMLLYHNPRLALGQLKMDVAPQGERQCRATLANEPFLEKYSNFQW 368

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
             +     A+K G TGFP++DAA+R L   GW HNR RM+ A+FLVK L VDWR GE ++
Sbjct: 369 EWNDAEFTAFKSGATGFPLVDAAVRCLTKTGWCHNRCRMLIANFLVKVLFVDWREGERWY 428

Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436
            +  +D D+A+N+GGW W++  G D+ PYFR FNP  Q  + DPQ  FI+ W+PEL NV 
Sbjct: 429 ATVAVDYDVANNSGGWLWSSGQGADAQPYFRFFNPFRQSAQHDPQAVFIKQWVPELRNVS 488

Query: 437 TQYIH 441
            + IH
Sbjct: 489 VRTIH 493


>gi|97048023|sp|P77967|CRYD_SYNY3 RecName: Full=Cryptochrome DASH
 gi|28374085|pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
           Cryptochrome
 gi|28374086|pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
           Cryptochrome
          Length = 489

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 149/485 (30%), Positives = 243/485 (50%), Gaps = 43/485 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISAR----QSHFIYASL 65
           LVW RNDLR+ D++ L+ A   S   + AV+   P Q+ Q H   A+    +S+F+  S+
Sbjct: 9   LVWFRNDLRLHDHEPLHRAL-KSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSV 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + +SL + G        +   + +  +     Q     ++Y+R+    E+  ++ L K
Sbjct: 68  QNLAESLQKVGNKLLV--TTGLPEQV--IPQIAKQINAKTIYYHREVTQEELDVERNLVK 123

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRSLP 178
           +L    I  K +  S L  P  +      +  ++T FRK + +  +       A  + LP
Sbjct: 124 QLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQLLP 183

Query: 179 VPAIRLTGPVTPSNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQ 233
            P I+L     P   P FF   ++  +++   F  GE   L  L+ +    +++  Y E 
Sbjct: 184 SPNIKLELTAPP---PEFFPQINFDHRSV-LAFQGGETAGLARLQDYFWHGDRLKDYKET 239

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREFY 291
           R+ +     +S+ SP+L++G LSPR  +  +K    +   +  + +  WL  EL+WR+F+
Sbjct: 240 RNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQE---RVSNDSTHWLIFELLWRDFF 296

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R +   Y +    +  +   +   W +D    + W+ G TG+P++DA MR+LN  G+M N
Sbjct: 297 RFVAQKYGNKLFNRGGL-LNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSN 355

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R   ASFL K+L +DWR G E+F S L+D D+ SN G W + A  GND+   FR FN 
Sbjct: 356 RGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARD-FRYFNI 414

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLSLNYPLPIVDH 463
             Q +++DPQGT++RHWLPEL N+P   IH P  WL            L ++YP P V+ 
Sbjct: 415 PKQSQQYDPQGTYLRHWLPELKNLPGDKIHQP--WLLSATEQKQWGVQLGVDYPRPCVNF 472

Query: 464 KKACH 468
            ++  
Sbjct: 473 HQSVE 477


>gi|261333249|emb|CBH16244.1| DNA repair enzyme, putative [Trypanosoma brucei gambiense DAL972]
          Length = 568

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 150/485 (30%), Positives = 220/485 (45%), Gaps = 75/485 (15%)

Query: 14  LRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQW---RQHGISARQSHFIYASLLQ 67
            R D R+TDN  L      +  +   VI +F   P Q    +          F+  SL  
Sbjct: 27  FRRDFRVTDNTGLLLLIERAGKQSLPVIPLFFFNPRQCDPDKNPYFGKACFEFLCQSLKH 86

Query: 68  VQK-SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +    L  + +  +   C    D +E + S      + +L +NR       +RD  LE+ 
Sbjct: 87  LDTVQLGGRLVCLRGSDC----DCLEVVRSSGYD--IKQLGFNRDITPFARKRDLQLEEW 140

Query: 127 LQHR-VICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              R V C + + D  LLPP  + N   + Y+V++PF +A++Q    +D+++ P P    
Sbjct: 141 CVKRGVRCVTSNMDYTLLPPDVVTNKNGKPYRVFSPFYRAVLQEHF-SDIQA-PNPKATT 198

Query: 185 TGPV-TPSNIPR---------------------FFDY-PFQAIDPMFP-----IGEQNAL 216
            G + T S++                         DY    A+   FP      G    L
Sbjct: 199 IGDIFTGSHVKEDVKATVDQARRSAMAADEFSSLVDYVDLAALPQTFPELVDRGGRSEGL 258

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
             L      K Y  +   DIP  + T+ LSP+L  G +S R+         V LL   K 
Sbjct: 259 LRLASVASAKNYSAIRD-DIPGDK-TTHLSPHLKFGTISIREAMQ------VALLHLGKE 310

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMG--------------------KPFIPWTEKIEW 316
            AF+   +LIWREFY  L+   P + +G                    +PF+      +W
Sbjct: 311 HAFT--RQLIWREFYSMLLYHNPRLALGQLKMDVALQGERQCRATLANEPFLEKYSNFQW 368

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
             +     A+K G TGFP++DAA+R L   GW HNR RM+ A+FLVK L VDWR GE ++
Sbjct: 369 EWNDAEFTAFKSGATGFPLVDAAVRCLTKTGWCHNRCRMLIANFLVKVLFVDWREGERWY 428

Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436
            +  +D D+A+N+GGW W++  G D+ PYFR FNP  Q  + DPQ  FI+ W+PEL NV 
Sbjct: 429 ATVAVDYDVANNSGGWLWSSGQGADAQPYFRFFNPFRQSAQHDPQAVFIKQWVPELRNVS 488

Query: 437 TQYIH 441
            + IH
Sbjct: 489 VRTIH 493


>gi|158318950|ref|YP_001511458.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec]
 gi|158114355|gb|ABW16552.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec]
          Length = 409

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 171/371 (46%), Gaps = 33/371 (8%)

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           L+ +L  R +C        + PG +       Y+V+TPF +A  ++  +           
Sbjct: 54  LDAQLGGR-LCVRTGSPYAVAPGRLRKADGTSYRVFTPFYRAWKEHGWR----------- 101

Query: 183 RLTGPVTPSNI----PRFFDYPFQAI--DPMF------PIGEQNALHILRKFCKEKVYYY 230
              GP  P++     P   D   + I  DP        P GE  A   LR F  E +  Y
Sbjct: 102 ---GPAIPADPVWLQPADLDGGSEPIPADPELGGTELPPAGEHAAHERLRAFLTESLAGY 158

Query: 231 VEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
              RD PA     G +      +               +           A  + +EL W
Sbjct: 159 AAHRDEPAAASESGDAVPGWSGASRAGGAGGAGGAGGADAAGGGGGLAGSAEKFRSELAW 218

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REFY  ++A  PS             + +       +AWK G TG+PI+DA MRQL   G
Sbjct: 219 REFYADVLAGTPSSARTD-LTDTLAALAYEPPGDTFEAWKWGRTGYPIVDAGMRQLLAEG 277

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+HNR+RMI ASF+ KDL V    G  +++ +L+DGDLASNN GWQW A TG D+ PYFR
Sbjct: 278 WVHNRVRMIEASFVCKDLNVHRTHGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFR 337

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467
           +FNP  QG++FDP G +IR W+PEL  +P   +H P  W         YP P+VDH    
Sbjct: 338 VFNPVSQGRKFDPAGEYIRRWVPELRGLPPDAVHEP--WKLPAGPPNGYPRPVVDHAVER 395

Query: 468 HHTLNQYYAAK 478
              L+++  A+
Sbjct: 396 REALDRHARAR 406


>gi|218296790|ref|ZP_03497496.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23]
 gi|218242879|gb|EED09413.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23]
          Length = 417

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 135/427 (31%), Positives = 199/427 (46%), Gaps = 43/427 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVW R DLR+ D+ AL  A   S   ++ + +  P   R    S R+  +   ++  +
Sbjct: 1   MNLVWHRGDLRLKDHPALLQAL--SQGPLVGLVVLDPNNLR---TSPRRRAWFLENVRAL 55

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +  ++G      +   +    E +     + +   ++  + Y      RD   E  L 
Sbjct: 56  RAAYRERGGALWVVEGPPW----EVVPQVARRLKAKAVYALKSYTPYGRYRDARTEAALG 111

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V         L+PP     H     +VYTPF +    N    D               
Sbjct: 112 --VPLHLLPAPHLIPPDLPRAH-----RVYTPFSR----NFQGLDPPLPAP--------E 152

Query: 189 TPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                P   + P +  DP  P+   GE+ A   L  F + K+  Y  +RD    +G S+L
Sbjct: 153 ALPQAPEEGEIPQE--DPGLPLPEPGERAARARLHAFLEAKLPRYPLERDRLDGEGGSRL 210

Query: 246 SPYLSIGVLSPRQC-WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           SPY ++GVLSPR+  W  L+        +   GA  W+ EL+WR+F  HL+  +P +   
Sbjct: 211 SPYFALGVLSPREAAWEALR--------RGGEGARKWVAELLWRDFSYHLLYHFPEMAQ- 261

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +      E + W +D  L QAW  G TG P++DAAMR+L   G++ NR RM  A F VK 
Sbjct: 262 RALDARFEALPWTEDEELFQAWYLGKTGVPLVDAAMRELQATGFLSNRARMAVAQFAVKY 321

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W+  EE F   LLDGD A N  GWQWA   G D+ PYFR+FN   QG+R DP G +
Sbjct: 322 LLLPWQRAEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNLVEQGRRHDPDGAW 381

Query: 425 IRHWLPE 431
           +R + PE
Sbjct: 382 LRRFAPE 388


>gi|322494540|emb|CBZ29842.1| putative DNA repair enzyme [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 541

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 155/550 (28%), Positives = 237/550 (43%), Gaps = 102/550 (18%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATP---EQWRQHGISARQ 57
           T    V L   R DLR+ DN  L A C+ +  + I V   F   P   ++ R        
Sbjct: 22  TEQEEVALFLFRRDLRVVDNTGLQALCNEAARRSIPVLPAFFFNPIQCDKKRNPYFGDAF 81

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ------RVTKLFYNRQ 111
             F   SL+ +  +    G +            +   D  CL++       V  L +N  
Sbjct: 82  FQFFCESLVDLDGATQLNGGLV----------CLRGSDEDCLRRIRDGGYEVKVLGFNED 131

Query: 112 YEINEVRRDKLLEKRL-QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPF-------- 161
           Y    + RD+LL     +  ++C +   D  L P   ++  + Q Y V+TPF        
Sbjct: 132 YTPFALVRDRLLRDYADKQGIVCVTGPHDYSLRPLDEVVKDSEQPYSVFTPFYNKFTAEH 191

Query: 162 ----RKALIQNL--VQADLRSLPVPAIR--LTGP-VTPSNIPRFFDYPFQAIDPMFPIGE 212
                K L+ N+  VQ+ L S P   +   L  P +  +++P+  D+           G 
Sbjct: 192 ARKVAKPLLVNVRKVQSMLVSQPKKCLEHHLVDPALLYTHMPQVQDHG----------GR 241

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
              L   R  C E++  Y + RD  A   TS LSP++  G +S R+ W+          +
Sbjct: 242 TEGLK--RLACVERLKQYADVRDDIAGDCTSHLSPHMKCGTVSTREVWH--------ASV 291

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK--------------------PFIPWTE 312
           +       +  +L+WREFY  L    P +  G+                    PF P  +
Sbjct: 292 QALGTGHPFTRQLVWREFYAMLAFTRPRLLQGQLNSFIGQKDIVKATQPKQNAPFQPSYD 351

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
             +W   +   +A+K+G TG P++DAA+R L   GW HNR R++ ++F VK L +DWR  
Sbjct: 352 DYKWRWKAEHFEAFKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWREC 411

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           E +F +  +D D+A+NNGGW W++  G D+ PYFR FN   Q +RFDP   F+  W+PEL
Sbjct: 412 ERWFATVAVDYDVANNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFVFQWVPEL 471

Query: 433 NNVPTQYIH------------APHSWLDK-------NDLSLNYPLPIVDHKKACHHTLNQ 473
             VP   +H            A  ++  K        +   +YP PIVD K A    + +
Sbjct: 472 AKVPPSVVHHWEEYCARARDKATGTYSRKRGAQGKAEEYPTSYPAPIVDIKAATKAVIEE 531

Query: 474 Y--YAAKKQS 481
           Y  Y   K+S
Sbjct: 532 YKKYGKYKES 541


>gi|94965681|emb|CAG28805.1| cryptochrome1 [Brassica napus]
 gi|95140047|emb|CAC87903.2| cryptochrome 1 [Brassica napus]
          Length = 680

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 153/501 (30%), Positives = 237/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++  SL Q+  
Sbjct: 13  IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYQPGRVSRWWLKNSLAQLDS 70

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L   
Sbjct: 71  SLRSLGTCLITKRST---DSVASLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKDALTAE 127

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  KSF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 128 GIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 186

Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              ++   F D   +  + +       G  NA   L  F    +  Y + R       TS
Sbjct: 187 KCVADTLIFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 246

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G +S R+ +              N+  EE V+L +K           +  RE
Sbjct: 247 FLSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 296

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 297 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 355

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 356 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 415

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461
           NP  +G +FDP G ++R WLPEL+ +PT++IH    AP S L    + L  NYP PIV  
Sbjct: 416 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPIVGL 475

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 476 DEAKARLHEALSQMWQLEAAS 496


>gi|7648568|gb|AAF65584.1|AF139916_5 hypothetical DNA photolyase [Brevibacterium linens]
          Length = 487

 Score =  190 bits (482), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 146/464 (31%), Positives = 213/464 (45%), Gaps = 56/464 (12%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ----- 57
           +T+   + LVW R+DLR+ D++AL AA   +D +VIAV+I   E   + G+  R      
Sbjct: 2   STSGEDLTLVWFRDDLRVADHEALTAA--RADGRVIAVWIR--ETRDEEGLGPRPLGGAC 57

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             + + SL  + + LS  GI   +         ++   S      VT + + R+Y     
Sbjct: 58  RWWAHESLTVLHEELSDLGIPLLFAAGRAEKIIVQLASSLG----VTAVRWTRRYASASR 113

Query: 118 RRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
             D  ++  L  +     S   ++L+ P +    +   YKV+TPF KA+    V  D+  
Sbjct: 114 ALDGQIKTVLNDQGFTVHSHTGALLVEPWTAAPQSSDHYKVFTPFWKAVAGRDV-GDV-- 170

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPF------------------------------QAIDP 206
           LP P  +   P++ + + R  + P                                 I  
Sbjct: 171 LPKPQAQ--SPLSQTLLSRAHECPAVMELDGLGLLDGTETGAGEAAAASGPRWWQDTIAG 228

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKE 265
            +  G + A   L       +  Y   +D+P+    TS+LSP L  G LSPRQ     + 
Sbjct: 229 HWSPGLRAAEDQLDDLSA-IIDGYTTSKDVPSDAASTSRLSPRLRHGELSPRQLLQAART 287

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
                L +    A  W+ +L WREF  HL   YP +    P  P      +  D   L  
Sbjct: 288 --TSSLTQDDRAA--WIRQLYWREFSWHLTYHYPHID-SAPIRPEFHNFPYEDDDDALTH 342

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W+ G TG+P+IDA M QL   GWMHNR+RM+TASFL K+LL  W  GE++F   L+D D 
Sbjct: 343 WRAGTTGYPLIDAGMAQLWQTGWMHNRVRMVTASFLTKNLLQHWWFGEQWFWDTLVDADE 402

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           A+N   WQW A +G D+ PYFR+FNP  Q +RFDP   +I  WL
Sbjct: 403 ANNPVSWQWVAGSGADAAPYFRVFNPERQRERFDPDDAYIEDWL 446


>gi|282918481|ref|ZP_06326218.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317615|gb|EFB47987.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus C427]
          Length = 457

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 178/341 (52%), Gaps = 20/341 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
                 +N   + YKV+T F K     L   D+    + +       +P ++  F D  F
Sbjct: 129 FKASKTMNQQGEPYKVFTSFSKKWRPYLRYRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
            +      I EQN     + F  + +  Y   RD      TSQLS  L+ G+L   + +N
Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L   + +     ++   +++ ELI+REFY  LM  YP     + F     +I+W+++  
Sbjct: 241 DLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKSKYRQIKWSQNEA 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
              AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW  GE++F   L+
Sbjct: 296 DFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  +I+ +LP  N +  +Y+H
Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKALYIKTYLPIFNQIDAKYLH 415

Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476
                 + N      +L  +YP  +VDH++     L  + A
Sbjct: 416 DTQR-NESNLFELGIELGRHYPRQMVDHQEKRTQVLAAFKA 455


>gi|15923681|ref|NP_371215.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926368|ref|NP_373901.1| hypothetical protein SA0646 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267151|ref|YP_001246094.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393199|ref|YP_001315874.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979019|ref|YP_001441278.1| hypothetical protein SAHV_0688 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315330|ref|ZP_04838543.1| hypothetical protein SauraC_04087 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005483|ref|ZP_05144084.2| hypothetical protein SauraM_03410 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794988|ref|ZP_05643967.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9781]
 gi|258418305|ref|ZP_05682570.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9763]
 gi|258421602|ref|ZP_05684527.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9719]
 gi|258430795|ref|ZP_05688507.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9299]
 gi|258441712|ref|ZP_05690984.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A8115]
 gi|258445852|ref|ZP_05694029.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A6300]
 gi|258449657|ref|ZP_05697759.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A6224]
 gi|269202312|ref|YP_003281581.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282894455|ref|ZP_06302684.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8117]
 gi|282926553|ref|ZP_06334183.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A10102]
 gi|295406409|ref|ZP_06816215.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8819]
 gi|296274755|ref|ZP_06857262.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245136|ref|ZP_06929010.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8796]
 gi|13700582|dbj|BAB41879.1| SA0646 [Staphylococcus aureus subsp. aureus N315]
 gi|14246460|dbj|BAB56853.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740220|gb|ABQ48518.1| Deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149945651|gb|ABR51587.1| Deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721154|dbj|BAF77571.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788960|gb|EEV27300.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9781]
 gi|257839098|gb|EEV63577.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9763]
 gi|257842528|gb|EEV66952.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9719]
 gi|257849467|gb|EEV73437.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9299]
 gi|257852181|gb|EEV76108.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A8115]
 gi|257855428|gb|EEV78366.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A6300]
 gi|257857165|gb|EEV80064.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A6224]
 gi|262074602|gb|ACY10575.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282591446|gb|EFB96518.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A10102]
 gi|282763168|gb|EFC03299.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8117]
 gi|294968554|gb|EFG44577.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8819]
 gi|297177807|gb|EFH37056.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8796]
 gi|312829185|emb|CBX34027.1| FAD binding domain of DNA photolyase family protein [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315129365|gb|EFT85358.1| hypothetical protein CGSSa03_00150 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329724512|gb|EGG61019.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 457

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 225/471 (47%), Gaps = 29/471 (6%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
           L N +   ++  L+   +     + A +   PE+      S  ++ F   +L +  +SL 
Sbjct: 6   LLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQRFYQSLH 64

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---QHR 130
            + +        ++DD I    S+C +  ++++          +    +L +R    + R
Sbjct: 65  AEKLT---PYVMSYDDII----SFCKENNISEVVIAGDIMSYHLEEYDILHQRSLFNEAR 117

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +       +        +N   + YKV+T F +     L   D+    + +       +P
Sbjct: 118 IAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFEDFVIASP 177

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
            ++  F D  F +      + EQN     + F  + +  Y   RD      TSQLS  L+
Sbjct: 178 DDLV-FDDIAFGSS----QVIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALA 229

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G+L   + +N L   + +     ++   +++ ELI+REFY  LM  YP     + F P 
Sbjct: 230 YGLLDIIEIFNDLLARYDE----DEANHEAFIRELIFREFYYVLMTQYPETSY-QAFKPK 284

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
             +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW 
Sbjct: 285 YRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWT 344

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ +LP
Sbjct: 345 WGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLP 404

Query: 431 ELNNVPTQYIHAPHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             N +  +Y+H         +    +L  +YP  +VDH++     L  + A
Sbjct: 405 IFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455


>gi|253732866|ref|ZP_04867031.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253729231|gb|EES97960.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 457

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 176/340 (51%), Gaps = 18/340 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
                 +N   + YKV+T F K     L   D+    + +       +P ++  F D  F
Sbjct: 129 FKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
            +      I EQN     + F  + +  Y   RD      TSQLS  L+ G+L   + +N
Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L   +     + ++   +++ ELI+REFY  LM  YP     + F P   +I+W+++  
Sbjct: 241 DLLARYD----QDEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPKYRQIKWSQNET 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
               W +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW  GE++F   L+
Sbjct: 296 DFNVWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ +LP  N +  +Y+H
Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415

Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
                    +    +L  +YP  +VDH++     L  + A
Sbjct: 416 DTQRNESNLFEQGIELGRHYPRQMVDHQEKRTQVLATFKA 455


>gi|313682739|ref|YP_004060477.1| deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155599|gb|ADR34277.1| Deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM
           16994]
          Length = 455

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 147/478 (30%), Positives = 221/478 (46%), Gaps = 43/478 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLRI DN  L     + + +V+ +FI  P          R+   IY +LL ++ 
Sbjct: 4   ILWFRRDLRIEDNPLL-----SLEGEVLPIFIFDPNILSSLQNDDRRVSIIYNALLNLKS 58

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL  +G+          D   +WL S   +    ++  +  Y+   + RD+     + H 
Sbjct: 59  SLQMRGLDLALFYGKPVD-VFKWLLS---RHHFDEVCASGDYDHYALERDR----EISHL 110

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLTGPVT 189
           +   S DD+ +  P  I+ +    Y V+TPF            +R  +PV          
Sbjct: 111 LPFNSLDDTYIFRPDEIVKNDGTPYLVFTPFYNRAKSLFSPEHMREFIPVEQSLTDFEYD 170

Query: 190 PSNIPRFFDY---PFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +  R  D+   P Q      I       +Q++  I       K+ +Y + RD  A+ G
Sbjct: 171 SLHTIRQSDHTSKPMQLESIGFISQKLSSRQQSSPAIQLDQFASKIAHYSQDRDYMALNG 230

Query: 242 TSQLSPYLSIGVLSPRQC--WNRLKEEFVDLLIKPKSGAFS--WLNELIWREFYRHLMAF 297
           TS LS  L  G LS R    W         +LI+ K G+ +  +  +LI+REFY  L+  
Sbjct: 231 TSGLSTQLRFGTLSVRAVLRW---------MLIQKKRGSDTEPFFRQLIFREFYAMLLYH 281

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +       P+        +     A+    TG PI+DA +R+L   G MHNR RM+ 
Sbjct: 282 FPHLSEQNFRYPF----RGIANEEYFNAFCTAKTGVPIVDAGIRELLETGEMHNRARMLC 337

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASF  K+LL+ W+ GE +F   L D D ASN   WQW+A TG D  PYFRIFNP  QGK+
Sbjct: 338 ASFFTKNLLLPWQWGEAFFAQHLNDYDAASNILSWQWSAGTGVDPQPYFRIFNPYAQGKK 397

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHTLNQY 474
           FD  G +IR W+P+L +V +  +H   +      L+L +YP PIV  K +    L+ +
Sbjct: 398 FDSDGVYIRRWMPQLASVSSTTLHNETALF---SLTLCDYPHPIVYQKTSAKRALDHF 452


>gi|297158620|gb|ADI08332.1| deoxyribodipyrimidine photo-lyase [Streptomyces bingchenggensis
           BCW-1]
          Length = 466

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 140/474 (29%), Positives = 221/474 (46%), Gaps = 31/474 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + V +     DLR+ DN AL  A   +++ V+ +F+          +   ++ F+   L 
Sbjct: 3   VRVSVALFTADLRVHDNPALDGALREAES-VVPLFVVDSGIRDADFVVPNRAVFLADCLA 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIE-----WLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            +  +L  +G      +     ++          +  +    +     R+  +      +
Sbjct: 62  DLDAALRARGGRLVVRRGDVVQETCRVAARVGAGAVHMAGGASGYAARREARLRVALARE 121

Query: 122 LLEKRLQHRVICKSFDDSVLLPPG-----SILNHALQMYKVYTPFRKALIQNLVQADL-- 174
             E R+ H          VL+P G     S  +     + V+TP+ +       +A L  
Sbjct: 122 RRELRV-HEGAVTVVAPGVLVPSGKSHSTSGGSQRKDHFAVFTPYYRRWRSEPWRAPLPA 180

Query: 175 -RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            R + VP+IR     T +++      P  A   +   GE  A   LR++    +  Y E+
Sbjct: 181 PRVVRVPSIRSAALPTAASL-----APGAASLDLPAGGETAARRRLRRWAAGPLADYAER 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +D  A   TS+LSPYL  G LSP +   R        L     GA +++ +L WR+F+  
Sbjct: 236 QDDLAGDATSRLSPYLHFGCLSPVEVARRA-------LDAGGPGAEAFVRQLAWRDFHLQ 288

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++A  P     + + P  ++  W +D+  + AW  G TG P++DAAMRQL   GWM  R 
Sbjct: 289 VLAARPDAAH-RDYRPRHDR--WRQDADEVAAWCAGLTGCPVVDAAMRQLTREGWMPGRA 345

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ ASFL K L +DWR G  +F++ L+DGD+A+N   WQWAA TG D+ P  RI NP I
Sbjct: 346 RLLAASFLAKTLYIDWRTGARHFLALLVDGDIANNQLNWQWAAGTGTDTRP-GRILNPLI 404

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467
           Q  R DP+G ++R W+PEL  V    +H P      +  +L YP PIVD  +A 
Sbjct: 405 QALRHDPEGEYVRRWVPELAAVQGPAVHRPWQLPGPDRAALAYPDPIVDLAEAA 458


>gi|57651532|ref|YP_185630.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus COL]
 gi|87161809|ref|YP_493380.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|151220872|ref|YP_001331694.1| hypothetical protein NWMN_0660 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508955|ref|YP_001574614.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140907|ref|ZP_03565400.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258452899|ref|ZP_05700893.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|262048427|ref|ZP_06021312.1| hypothetical protein SAD30_2154 [Staphylococcus aureus D30]
 gi|282921981|ref|ZP_06329679.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9765]
 gi|284023713|ref|ZP_06378111.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus 132]
 gi|294849360|ref|ZP_06790103.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9754]
 gi|304381695|ref|ZP_07364344.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|57285718|gb|AAW37812.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus COL]
 gi|87127783|gb|ABD22297.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|150373672|dbj|BAF66932.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160367764|gb|ABX28735.1| possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257859410|gb|EEV82264.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|259163515|gb|EEW48072.1| hypothetical protein SAD30_2154 [Staphylococcus aureus D30]
 gi|269940268|emb|CBI48645.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus TW20]
 gi|282593834|gb|EFB98825.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9765]
 gi|294823892|gb|EFG40318.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9754]
 gi|302750590|gb|ADL64767.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339798|gb|EFM05743.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315197666|gb|EFU28001.1| possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320139977|gb|EFW31838.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320141933|gb|EFW33761.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313414|gb|AEB87827.1| Possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 457

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 135/471 (28%), Positives = 224/471 (47%), Gaps = 29/471 (6%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
           L N +   ++  L+   +     + A +   PE+      S  ++ F   +L +  +SL 
Sbjct: 6   LLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQRFYQSLH 64

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---QHR 130
            + +        ++DD I    S+C +  ++++          +    +L +R    + R
Sbjct: 65  AEKLT---PYVMSYDDII----SFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEAR 117

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +       +        +N   + Y V+T F K     L   D+    + +       +P
Sbjct: 118 IAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASP 177

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
            ++  F D  F +      I EQN     + F  + +  Y   RD      TSQLS  L+
Sbjct: 178 DDLV-FDDIAFGSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALA 229

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G+L   + +N L   + +     ++   +++ ELI+REFY  LM  YP     + F P 
Sbjct: 230 YGLLDIIEIFNDLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPK 284

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
             +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW 
Sbjct: 285 YRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWT 344

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ +LP
Sbjct: 345 WGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLP 404

Query: 431 ELNNVPTQYIHAPHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             N +  +Y+H         +    +L  +YP  +VDH++     L  + A
Sbjct: 405 IFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455


>gi|88194464|ref|YP_499258.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|87202022|gb|ABD29832.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|329728519|gb|EGG64952.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 457

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 135/471 (28%), Positives = 224/471 (47%), Gaps = 29/471 (6%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
           L N +   ++  L+   +     + A +   PE+      S  ++ F   +L +  +SL 
Sbjct: 6   LLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQRFYQSLH 64

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---QHR 130
            + +        ++DD I    S+C +  ++++          +    +L +R    + R
Sbjct: 65  AEKLT---PYVMSYDDII----SFCKENNISEVVTAGDIMSYHLEEYDILHQRSLFNEAR 117

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +       +        +N   + Y V+T F K     L   D+    + +       +P
Sbjct: 118 IAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFENFVIASP 177

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
            ++  F D  F +      I EQN     + F  + +  Y   RD      TSQLS  L+
Sbjct: 178 DDLV-FDDIAFGSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALA 229

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G+L   + +N L   + +     ++   +++ ELI+REFY  LM  YP     + F P 
Sbjct: 230 YGLLDIIEIFNDLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPK 284

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
             +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW 
Sbjct: 285 YRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWT 344

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ +LP
Sbjct: 345 WGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLP 404

Query: 431 ELNNVPTQYIHAPHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             N +  +Y+H         +    +L  +YP  +VDH++     L  + A
Sbjct: 405 IFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455


>gi|323473750|gb|ADX84356.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus REY15A]
          Length = 433

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 148/476 (31%), Positives = 223/476 (46%), Gaps = 51/476 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +  L + V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F      N+V+      PV        
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              +N   ++         + P  GE+       K  +       +++D  A    + LS
Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G LS R+ +  L +            + + + +L WR+FY  L+A+Y      +P
Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +  LLQAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK LL
Sbjct: 264 LKREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLL 323

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +D +  +++
Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDQEAKYVK 381

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
            W+ EL +  ++ IH  + +  K     NYP PIVD +   +     Y   +K  +
Sbjct: 382 RWVDELESYDSEIIHNAYKYTLK-----NYPKPIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|307153163|ref|YP_003888547.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
 gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
          Length = 495

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 154/501 (30%), Positives = 251/501 (50%), Gaps = 45/501 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ--HGISAR---QSHFIYASL 65
           L+W RNDLR+ D++ L  A     A++I  +     Q+R+  +G       ++ F+  SL
Sbjct: 7   LIWYRNDLRLHDHEPLNKALKEK-AEIIPFYCFDERQFRKTSYGFPKTGNFRAQFLLESL 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++KSL ++G      +     + I  +     + ++T ++Y+++    E+  +K LE 
Sbjct: 66  ADLKKSLQERGSDLIIRK--GLPEKI--IPQLAQELKLTAVYYHQEVTAEELAVEKALES 121

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK----ALIQNLVQADLRSL-PV 179
            L   RV  +SF  + L  P ++      + +++T FRK    A   + +    +SL P+
Sbjct: 122 GLNKIRVKTESFWGATLYHPDNLPFKIAHIPELFTNFRKKVEKASTVDPILPTPKSLSPL 181

Query: 180 PAIRLTGPVTPSNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRD 235
           PAI +     P       + P   Q     F  GE  AL  L ++  +K  +  Y E R+
Sbjct: 182 PAIEIG--TLPDLAALGLETPIFDQRGVLKFRGGETAALERLEEYFWQKNCLKSYKETRN 239

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            +     +S+ SP+L+ G +SPR  +  + +++    +K  S  +  + EL+WR+++R +
Sbjct: 240 GMLGGDYSSKFSPWLASGCISPRYIYEAV-QKYEQQRVKNDS-TYWLIFELLWRDYFRFI 297

Query: 295 MA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
            A      FYPS   G   +PW E  +W +     Q W++G TG+P++DA MR+L   G+
Sbjct: 298 CAKHGNKIFYPSGLQGLD-LPWKE--DWQR----FQLWQEGKTGYPLVDANMRELAATGF 350

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R   ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR 
Sbjct: 351 MSNRGRQNVASFLTKNLGLNWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRY 409

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVD 462
           FN   Q K +DP G ++RHWLPEL  VP   IH P     +        L ++YP P+VD
Sbjct: 410 FNIPKQSKDYDPLGEYLRHWLPELAAVPGDKIHEPWKLSSEEQKRYQVRLGVDYPQPVVD 469

Query: 463 HKKACHHTLNQYYAAKKQSLL 483
             K+       Y   +K + L
Sbjct: 470 FFKSIKTNEAIYSTREKGTRL 490


>gi|285816392|gb|ADC36879.1| Deoxyribodipyrimidine photolyase [Staphylococcus aureus 04-02981]
          Length = 457

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 177/340 (52%), Gaps = 18/340 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
                 +N   + YKV+T F +     L   D+    + +       +P ++  F D  F
Sbjct: 129 FKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIVF 187

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
            +      + EQN     + F  + +  Y   RD      TSQLS  L+ G+L   + +N
Sbjct: 188 GSS----QVIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L   + +     ++   +++ ELI+REFY  LM  YP     + F P   +I+W+++  
Sbjct: 241 DLLARYDE----DEANHEAFIRELIFREFYYVLMTQYPETSY-QAFKPKYRQIKWSQNEA 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
              AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW  GE++F   L+
Sbjct: 296 NFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ +LP  N +  +Y+H
Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415

Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
                    +    +L  +YP  +VDH++     L  + A
Sbjct: 416 DTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455


>gi|117927361|ref|YP_871912.1| deoxyribodipyrimidine photo-lyase type I [Acidothermus
           cellulolyticus 11B]
 gi|117647824|gb|ABK51926.1| deoxyribodipyrimidine photo-lyase type I [Acidothermus
           cellulolyticus 11B]
          Length = 497

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 144/487 (29%), Positives = 221/487 (45%), Gaps = 56/487 (11%)

Query: 13  WLRNDLRITDNKALYAACHNSDAK-VIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           W R DLR+ D+ AL AA   + A+ ++ +F+  P   R  G +  Q  F+ + L ++ + 
Sbjct: 36  WFRRDLRLADSPALVAAARAAGAEPIVPLFVVDPRAGRGAGPNRWQ--FLASCLEELDRQ 93

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL---Q 128
           L     + +             +  +  +     +  + +      RRD+++ +RL    
Sbjct: 94  LGGALTLRRAPGVGGAAAVAAIVAGFAAEVGAEIVVASGETTPYGRRRDRIVAERLAAED 153

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            R++    D    + PG +       Y+V++ F +A +   V+A       PA R    V
Sbjct: 154 RRLLL--LDTPYCVAPGRLRRTGGHPYRVFSAFYRAWLAEPVEAPYER---PAARFDALV 208

Query: 189 TPSNIPRFFDYPFQAID---------PMFPI------GEQNALHILRKFCKEKVYYYVEQ 233
           +        D   +  D         P+ P       GE+ A+  L +FC+  +  Y   
Sbjct: 209 SDGEATDLVDAAGRGYDVSPSWWRDLPLGPAPHLPAAGERAAIDRLTQFCESALPQYDRH 268

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P + GTS+LS  L  G L PR     +++     +  P    F  L EL WREF+  
Sbjct: 269 RDRPDMAGTSRLSADLHFGTLHPRT----VRDAARKTVEGPALDRF--LAELAWREFFAD 322

Query: 294 LMAFYPSVCMGK--PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           ++   P        P        +  +      AW +G TG+ ++DA MRQL + GWMHN
Sbjct: 323 VLWHRPDAAWHSWDPIGRHLAVDDGPQARERFTAWARGETGYGLVDAGMRQLLSEGWMHN 382

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM++ASFLVKDL +DWR G  +F+  L+DGD+ASNN  WQW A  G D+ PY RIFNP
Sbjct: 383 RVRMVSASFLVKDLHLDWRWGARWFLWHLVDGDIASNNLNWQWVAGIGTDAAPYHRIFNP 442

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
             Q +RFDP G + R +  +L   P +                   L IV+HK      L
Sbjct: 443 DRQAERFDPDGAYRRRYCADL---PAR-------------------LSIVNHKAERAEAL 480

Query: 472 NQYYAAK 478
            ++ AAK
Sbjct: 481 TRWAAAK 487


>gi|15559008|gb|AAL02092.1|AF348461_1 cryptochrome 1b [Solanum lycopersicum]
 gi|15559010|gb|AAL02093.1|AF348462_1 Cryptochrome 1b [Solanum lycopersicum]
          Length = 583

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 150/501 (29%), Positives = 233/501 (46%), Gaps = 47/501 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++    +VW R DLR+ DN AL AA       VIAVFI  PE+   +        +I  S
Sbjct: 2   SSGGCSIVWFRRDLRLEDNPALAAAVRA--GSVIAVFIWAPEEEGYYCPGRVSRWWIKKS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL + G      +    +DS+  L         T++F+N  Y+   + RD   +
Sbjct: 60  LAHLDSSLKKLGTSLITKRS---NDSVSSLLQVVKSTGATRVFFNHLYDPISLVRDNCAK 116

Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    V   SF+  +L  P  +++   + +  ++ F +  +      +   LP P   
Sbjct: 117 ETLSAEGVSVCSFNADLLYEPWEVVDDESRPFSTFSDFWEKCLTMPYDPEAPLLP-PKRI 175

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237
           ++G  +  PS+   F     +  + +       G  NA   L  F    +  Y + R   
Sbjct: 176 ISGDASRCPSDNLVFESELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRSKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK--------------EEFVDLLIKPKSGAFSWLN 283
               TS LSP L  G +S R+ ++R++              EE V+L +K          
Sbjct: 236 DSATTSFLSPCLHFGEVSVRKVFHRIRTKQTLWANEGNKAGEESVNLFLK---------- 285

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            +  REF R+ M+FY      +P +   +   W  D    +AW+QG TG+P++DA MR+L
Sbjct: 286 SIGLREFSRY-MSFYHPYSHERPLLGQLKYFPWLVDEGYFKAWRQGRTGYPLVDAGMREL 344

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GW+H+R+R++ +SF VK L + W  G +YF   LLD DL S+  GWQ+   T  D  
Sbjct: 345 WATGWLHDRIRVVVSSFSVKVLQLPWTWGMKYFWDTLLDADLESDALGWQFITGTLPDGC 404

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457
            +  I NP  +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYP
Sbjct: 405 EFLGIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYP 464

Query: 458 LPIVD---HKKACHHTLNQYY 475
            PIV+    K+     L+Q +
Sbjct: 465 FPIVEIVAAKERLEEALSQMW 485


>gi|229583293|ref|YP_002841692.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51]
 gi|228014009|gb|ACP49770.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51]
          Length = 433

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 147/476 (30%), Positives = 223/476 (46%), Gaps = 51/476 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +  L + V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F      N+V+      PV        
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              +N   ++         + P  GE+       K  +       +++D  A    + LS
Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G LS R+ +  L +            + + + +L WR+FY  L+A+Y      +P
Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +  L QAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK L+
Sbjct: 264 LKREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLI 323

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I+
Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIK 381

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
            W+ EL +   + IH  + +  K     +YP PIVD +   + +   Y   +K  +
Sbjct: 382 RWVDELESYDAEIIHNAYKYTLK-----SYPKPIVDWRIRVNLSKRLYEVCRKSKI 432


>gi|4325368|gb|AAD17364.1| Arabidopsis thaliana flavin-type blue-light photoreceptor
           (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226,
           N=1)
          Length = 702

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 149/487 (30%), Positives = 233/487 (47%), Gaps = 33/487 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188

Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              ++   F D   +  + +       G  N    L  F    +  Y + R       TS
Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G ++     N   EE V+L +K           +  RE+ R++   +P    
Sbjct: 249 FLSPHLHFGEVAWANEGNEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSH 297

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK
Sbjct: 298 ERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 357

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP G 
Sbjct: 358 VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGE 417

Query: 424 FIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV--DHKKA-CHHTLNQY 474
           ++R WLPEL+ +PT +IH    AP S L    + L  NYPLPIV  D  KA  H  L+Q 
Sbjct: 418 YVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQM 477

Query: 475 YAAKKQS 481
           +  +  S
Sbjct: 478 WQLEAAS 484


>gi|258423340|ref|ZP_05686231.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257846401|gb|EEV70424.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 457

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 176/340 (51%), Gaps = 18/340 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
                 +N   + YKV+T F K     L   D+    + +       +P ++  F D  F
Sbjct: 129 FKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
            +      I EQN     + F  + +  Y   RD      TSQLS  L+ G+L   + +N
Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L   + +     ++   +++ ELI+REFY  LM  YP     + F     +I+W+++  
Sbjct: 241 DLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKSKYRQIKWSQNEA 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
              AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW  GE++F   L+
Sbjct: 296 DFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ +LP  N +  +Y+H
Sbjct: 356 DYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415

Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
                    +    +L  +YP  +VDH++     L  + A
Sbjct: 416 DTQRNESNLFEQGIELGRHYPRQMVDHQEKRTQVLAAFKA 455


>gi|15899214|ref|NP_343819.1| deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus P2]
 gi|13815773|gb|AAK42609.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (photoreactivating enzyme). (phrB) [Sulfolobus
           solfataricus P2]
          Length = 433

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 147/476 (30%), Positives = 222/476 (46%), Gaps = 51/476 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +  L + V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F      N+V+      PV        
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIKKPVQ------- 159

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              +N   ++         + P  GE+       K  +       +++D  A    + LS
Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G LS R+ +  L +            + + + +L WR+FY  L+A+Y      +P
Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +  L QAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK L+
Sbjct: 264 LKREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLI 323

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I+
Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIK 381

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
            W+ EL +   + IH  + +  K     +YP PIVD +   +     Y   +K  +
Sbjct: 382 RWVDELESYDAEIIHNAYKYTLK-----SYPKPIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|313676689|ref|YP_004054685.1| cryptochrome, dash family [Marivirga tractuosa DSM 4126]
 gi|312943387|gb|ADR22577.1| cryptochrome, DASH family [Marivirga tractuosa DSM 4126]
          Length = 475

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/446 (28%), Positives = 224/446 (50%), Gaps = 27/446 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65
           L+W R +LR+ DN+AL     NS+ K + ++I    +W+++ +  ++S     +F++ S+
Sbjct: 9   LIWFRKNLRLKDNQALLEGVQNSE-KYLLLYIFDEREWKKNPVGLKRSSDKKLNFLWQSV 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           L +++++  KG      +     D+ + +    ++ +   L+  ++    E   +K +E 
Sbjct: 68  LDLKQNIEAKGGQLVMLKG----DAEDLIQRLSIENKFDALYAPKESGTEEFELEKSVED 123

Query: 126 R-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             ++HR     +  + L     I     ++  ++T FRK   +N  Q  +R L      L
Sbjct: 124 FFIKHRAKVDFYAQTTLFHEDDIPWPIGKLPDIFTQFRK---ENEKQTGVRDLFESPEDL 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFC--KEKVYYYVEQRD- 235
           +  +    +  F D    +I P       F  GE +A   L  +    +++  Y   R+ 
Sbjct: 181 SASIPVKEVFEFSDLAIGSISPEEKSVLNFQGGETHAWERLEYYFWDSDQLKEYKNTRNG 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +   + +S+ SP+L++G +SP+  + ++K+   +   K     +  + ELIWR+++  ++
Sbjct: 241 LLGERYSSKFSPWLALGCISPKSIYYQVKQ--YEKERKKNQSTYWMIFELIWRDYFHFVL 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             + +    K  I   + ++W  D  L + WK   TG P IDA MR+LN  G+M NR R 
Sbjct: 299 KKFGAQLFQKEGIK-GKGVDWKWDLELFEKWKTAETGVPFIDANMRELNATGFMSNRGRQ 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFLVKDL +DWR+G  YF  QL+D D+ASN G W + A  GND     R FN   Q 
Sbjct: 358 NVASFLVKDLGLDWRMGAWYFEHQLIDYDVASNWGNWAYVAGVGNDPREN-RYFNILSQA 416

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH 441
           K++D +G ++RHW+PEL  +    IH
Sbjct: 417 KKYDVKGDYVRHWIPELKEIEGFNIH 442


>gi|229578080|ref|YP_002836478.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14]
 gi|228008794|gb|ACP44556.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14]
          Length = 433

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 147/477 (30%), Positives = 224/477 (46%), Gaps = 53/477 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
              L ++G  ++ Y   +  ++ I+      L + V  ++ N  Y      RD+ + K  
Sbjct: 63  NDELRKRGSRLYVYFGLA--EEEIK-----NLLKDVDAVYLNEDYTPFSKMRDERIRKYC 115

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +    I KSF+D +L       N     Y+ +T F      N+V+      PV       
Sbjct: 116 EDTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------ 159

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               +N   ++         + P  GE+       K  +       +++D  A    + L
Sbjct: 160 ----NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFL 215

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G LS R+ +  L +            + + + +L WR+FY  L+A+Y      +
Sbjct: 216 SPHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHE 262

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P       IEW  +  L QAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK L
Sbjct: 263 PLKREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVL 322

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           ++DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I
Sbjct: 323 IIDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYI 380

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           + W+ EL +   + IH  + +  K     +YP PIVD +   +     Y   +K  +
Sbjct: 381 KRWVDELESYDAEIIHNAYKYTLK-----SYPKPIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|256393411|ref|YP_003114975.1| deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM
           44928]
 gi|256359637|gb|ACU73134.1| Deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM
           44928]
          Length = 473

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 201/453 (44%), Gaps = 35/453 (7%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLR+ DN  L AA  ++D +V+ +F+       +  IS  +  F+  SL  +  +L   G
Sbjct: 31  DLRVHDNPVLAAAAASADGRVVPLFVLDGGILPR--ISETRRRFLEESLADLDAALRALG 88

Query: 77  IVFQYHQCSNFDDSIEWLDSYC-----LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
                       +    +         L   VT   + RQ  +    R    E  L  +V
Sbjct: 89  GRLVLRSGDVVAEVCRVVAEVDAVEVHLASDVTAYAHERQDALAAALRANGAELHLHDQV 148

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-VTP 190
                    + PPG +  +    + V+TP+ +   +  ++A     P  A RLT P +  
Sbjct: 149 -------HTIQPPGELRPNDRDHFSVFTPYWRRWAEMPLRA-----PASAPRLTVPDIAG 196

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
             +P   D            GE       +++  + V  Y +  D  A   TS+LSPYL 
Sbjct: 197 LELPTSADSTLSG---GLRGGETQGRKRAKQWLGKAVEDYEDIHDDLAANATSKLSPYLH 253

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +S  +   R   +       P SG  ++L +L WR+F+  +MA  P           
Sbjct: 254 FGCVSATELAARASRDH------PGSGTEAFLRQLCWRDFHHQVMAARPDAA----HTDL 303

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
             +  W  D   L AW  G TG PI+DA MRQL   GWMHNR R+ITA FL K L +DWR
Sbjct: 304 RPRGAWVDDPEALDAWTAGRTGIPIVDAGMRQLAAEGWMHNRARLITAGFLTKTLGIDWR 363

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G  +F   LLD D+A+N   WQW A TG D+ P  R+ NP  Q  R+DP G ++R ++P
Sbjct: 364 SGAAHFAHHLLDADVANNILNWQWVAGTGMDTRPN-RVMNPLRQATRYDPSGEYVRRYVP 422

Query: 431 ELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVD 462
           EL ++     +H P          L+YP PIV+
Sbjct: 423 ELADLSDAADVHQPWRLGPVALKELDYPAPIVE 455


>gi|206900389|ref|YP_002249959.1| deoxyribodipyrimidine photolyase [Dictyoglomus thermophilum H-6-12]
 gi|206739492|gb|ACI18550.1| deoxyribodipyrimidine photolyase [Dictyoglomus thermophilum H-6-12]
          Length = 433

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/453 (31%), Positives = 215/453 (47%), Gaps = 54/453 (11%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLRI DN A   AC +S  +++ ++I       +H  +     F+ ++L  V   L++ G
Sbjct: 12  DLRIKDNTAFIKACEDS-KEIVPLYIL-----ERHNFNKYSFEFVISALGYVNFELNKLG 65

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKS 135
                 +    +++ E+L     +     ++ ++ Y  +   ++KLL    + + I  + 
Sbjct: 66  SFLYLVERGFNEETFEFLRE---KIGFDAIYLSKDYLWSFEEKEKLLRNFCREKGIELRF 122

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
           F+ + L+ P  I        KV+TPF K     L   ++R       +L  P+    + +
Sbjct: 123 FEGNFLVSPNLI-----SQTKVFTPFFKKWSAYL--GEIRRKDFNFSKLNTPIL--ELSK 173

Query: 196 FFDYPFQA------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
           F D+ F        I+  F   E     +           Y E+RD+    GTS+LS Y+
Sbjct: 174 FEDFEFSKKVRLDLIEWGFKRLESFDFDV-----------YDEKRDLLYCDGTSKLSAYI 222

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           + GV+S    + ++K          KS  F  L EL +REF+ H+   +P       F  
Sbjct: 223 NYGVISIYDVYEKVK--------NSKSSQF--LRELAFREFWYHIRMHFPET-RNLEFQE 271

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
            T  IEW      ++ ++   TG+PI+DA +R L T GW+HNRLRMI ASF  K LL DW
Sbjct: 272 KTRNIEWLYREDWIRKFENAETGYPIVDAGIRCLKTEGWLHNRLRMILASFFTKTLLHDW 331

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           RIGEE+F   L+D D   N   WQW+AS G D  P  RIFNP IQ  +FDP   FI+ +L
Sbjct: 332 RIGEEFFKDYLVDYDEVLNIQNWQWSASVGADPRP-LRIFNPMIQSSKFDPYCEFIKKYL 390

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           PEL +   + IH P  +       L Y  P+VD
Sbjct: 391 PELKDEDCRKIHDPLKY------KLKYYTPMVD 417


>gi|29827753|ref|NP_822387.1| deoxyribodipyrimidine photolyase [Streptomyces avermitilis MA-4680]
 gi|29604854|dbj|BAC68922.1| putative deoxyribodipyrimidine photolyase [Streptomyces avermitilis
           MA-4680]
          Length = 457

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 215/467 (46%), Gaps = 36/467 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L AA   +  +V+ +F+           +  +  F+   L 
Sbjct: 1   MNVSVVLFTSDLRLHDHPPLRAALDGA-RQVVPLFVRDRAVDGAGFAAPNRLAFLADCLR 59

Query: 67  QVQKSLSQKG---------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            +   L ++G         +V Q  + +   D+    D   L   V+   + R+  +   
Sbjct: 60  DLDAGLRERGGRLVLRSGDVVDQVCKVAAEADA----DEVHLAAGVSAYAHRREQRLRSA 115

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRS 176
                    +   VI         + PG++   +   + V+TP FR    ++L  A    
Sbjct: 116 LEADGRRLHVHETVITA-------VAPGAVTPSSSDHFAVFTPYFRHWEREHLRDA---- 164

Query: 177 LPVP-AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           L  P  +R+   V    +P   +    +   +   GE+     L  + +  +  Y ++ D
Sbjct: 165 LGAPRGVRVPESVGSERLPTRTELSGLS-QGLAAGGEEEGRKRLMAWLRGGITAYEDRHD 223

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
             A   TS LSP+L  G LSP +  +R +            GA +++ +L WR+F+  ++
Sbjct: 224 DLAGDATSHLSPHLHFGTLSPVELVHRARR-------TGGPGAEAFVRQLAWRDFHYQVL 276

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A  P                       ++AW+ G TG+P+IDAAMRQL   GWMHNR R+
Sbjct: 277 AARPDAATADYRGRGDRWRSEAAAREEVEAWRTGRTGYPVIDAAMRQLRHEGWMHNRGRL 336

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TASFL K L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP  Q 
Sbjct: 337 LTASFLTKTLYVDWRVGARHFLELLVDGDVANNQLNWQWMAGTGTDTRPN-RVLNPVTQA 395

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           KR+DP G ++R W+PEL  +    +H P      +  + +YP PIV+
Sbjct: 396 KRYDPDGAYVRRWVPELEGLRGAAVHEPWKLKGLDRAAYDYPDPIVE 442


>gi|229583833|ref|YP_002842334.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27]
 gi|228018882|gb|ACP54289.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27]
          Length = 433

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 145/456 (31%), Positives = 216/456 (47%), Gaps = 51/456 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +  L + V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F      N+V+      PV        
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              +N   ++         + P  GE+       K  +       +++D  A    + LS
Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G LS R+ +  L +            + + + +L WR+FY  L+A+Y      +P
Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +  LLQAW +G TG+PIIDA MRQLN  G M NR+RM++A FLVK LL
Sbjct: 264 LKREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLSAFFLVKVLL 323

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +++
Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVK 381

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
            W+ EL +   + IH  + +  K     NYP  IVD
Sbjct: 382 RWVDELESYDAEIIHNAYKYTLK-----NYPKSIVD 412


>gi|227826669|ref|YP_002828448.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25]
 gi|227458464|gb|ACP37150.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25]
          Length = 433

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 145/456 (31%), Positives = 216/456 (47%), Gaps = 51/456 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +  L + V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F      N+V+      PV        
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              +N   ++         + P  GE+       K  +       +++D  A    + LS
Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G LS R+ +  L +            + + + +L WR+FY  L+A+Y      +P
Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +  LLQAW +G TG+PIIDA MRQLN  G M NR+RM++A FLVK LL
Sbjct: 264 LKREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLSAFFLVKVLL 323

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +++
Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVK 381

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
            W+ EL +   + IH  + +  K     NYP  IVD
Sbjct: 382 RWVDELESYDAKIIHNAYKYTLK-----NYPKSIVD 412


>gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Microcoleus chthonoplastes PCC 7420]
 gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Microcoleus chthonoplastes PCC 7420]
          Length = 488

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 147/497 (29%), Positives = 251/497 (50%), Gaps = 49/497 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASL 65
           L+W RNDLR+ D++ L+ A   + A+VI  +      +           A ++ F+  S+
Sbjct: 7   LLWYRNDLRLHDHEPLHQALQ-TKAQVIPCYCFDDRLFHTTSFGFPKTGAFRAKFLLESV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++++  +G      +     +++  + +   +  +T ++++++    EV  +  L+ 
Sbjct: 66  ADLRENVRSRGSNLLVRR--GLPENV--IPTLAKELDITTVYFHQEVTSEEVAVESALKN 121

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    +  ++F  S L  P  +  + L++ +++T FRK + +          P P    
Sbjct: 122 ALSEIGITVQTFWGSTLYHPDDLPFNLLKIPELFTNFRKQVEKK--STIYPPFPTPKRLP 179

Query: 185 TGP-VTPSNIPRFFDYPFQ-------AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           + P V    +P+  D+  +       A+ P F  GE   L  L  +  +K    V ++  
Sbjct: 180 SLPSVEVGELPQLADFGLESPIFDERAVLP-FQGGETAGLARLNDYFWKKDCLKVYKQTR 238

Query: 237 PAIQGT---SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYR 292
             + G+   S+ SP+L++G LSPR  + ++++   + +   K+ +  WL  ELIWR+F+R
Sbjct: 239 NGMLGSDYSSKFSPWLALGCLSPRFIYEQVQQYEQEQI---KNDSTYWLVFELIWRDFFR 295

Query: 293 HLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            + A      F PS   G P IPW E  +W++       W+QG TGFP+IDA MR+L   
Sbjct: 296 FICAKHGNRIFRPSGLQGIP-IPWKE--DWDR----FTLWQQGKTGFPLIDANMRELAAT 348

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+M NR R   ASFL K+L ++W+IG E+F S L+D D+ SN G W + A  GND+   F
Sbjct: 349 GFMSNRGRQNVASFLTKNLGINWQIGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-F 407

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460
           R FN   Q K +DPQG +++HWLPELN++P   +H P +            L ++YP P+
Sbjct: 408 RYFNIQKQSKDYDPQGYYVKHWLPELNSLPAAKVHQPWTLTSAEQKQFGVRLGVDYPNPV 467

Query: 461 VDHKKACHHTLNQYYAA 477
           VD  ++       Y AA
Sbjct: 468 VDLMESVKANEKVYNAA 484


>gi|227829309|ref|YP_002831088.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15]
 gi|284996667|ref|YP_003418434.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5]
 gi|227455756|gb|ACP34443.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15]
 gi|284444562|gb|ADB86064.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5]
          Length = 433

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 147/476 (30%), Positives = 221/476 (46%), Gaps = 51/476 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +  L + V  ++ N  Y      RD+ + K   
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRKYCA 116

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F      N+V+      PV        
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              +N   ++         + P  GE+       K  +       +++D  A    + LS
Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIERARQINYDRKDFVAEDNRTFLS 216

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G LS R+ +  L +            + + + +L WR+FY  L+A+Y      +P
Sbjct: 217 PHLKFGTLSIREVYYSLLD------------SQAIIRQLYWRDFY-TLLAYYNERVFHEP 263

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +  L QAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK L+
Sbjct: 264 LKREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLI 323

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I+
Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIK 381

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
            W+ EL +   + IH  + +  K     +YP PIVD +   +     Y   +K  +
Sbjct: 382 RWVDELESYDAEIIHNAYKYTLK-----SYPKPIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|28372347|dbj|BAC56984.1| cryptochrome 2 [Oryza sativa Japonica Group]
 gi|48716244|dbj|BAD23780.1| cryptochrome 2 [Oryza sativa Japonica Group]
 gi|215686763|dbj|BAG89613.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623271|gb|EEE57403.1| hypothetical protein OsJ_07585 [Oryza sativa Japonica Group]
          Length = 651

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 137/473 (28%), Positives = 228/473 (48%), Gaps = 28/473 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL +A    D  V+ VFI  P    Q         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128
           SL   G  +      S  +  +  +DS       T+L YN  Y+ ++ VR DK+ ++   
Sbjct: 66  SLESLGCPLVLIRAESTLEALLRCIDSVG----ATRLVYNHLYDPVSLVRDDKIKKELSA 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----LRSLPVPAIR 183
             +  +SF+  +L  P  I + +   +  +  + +  ++  + A       + +PVP + 
Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGLE 181

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  ++        ++ + +       G +NA  +L +F    +  Y +       
Sbjct: 182 SVRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
             TS LSPYL  G +S R+ +  ++ + +    +  S A      ++  +  RE+ R+L 
Sbjct: 242 ATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     K  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+
Sbjct: 302 FNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +QG
Sbjct: 361 IISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462
           +++DP G ++R W+PEL  +PT++IH    AP   L+    +L  NYP PIVD
Sbjct: 421 QKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVD 473


>gi|260765933|gb|ACX49997.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 674

 Score =  186 bits (473), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 153/501 (30%), Positives = 236/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++  SL Q+  
Sbjct: 18  IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 76  SLRSLGTCLITKRST---DSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQ 132

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLP-PKKIISGDVS 191

Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              S+   F D   +  + +       G  NA   L  F    +  Y + R       TS
Sbjct: 192 KCVSDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 251

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G +S R+ +              N   EE V+L +K           +  RE
Sbjct: 252 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 301

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 302 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 360

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 361 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 420

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461
           NP  +G +FDP G ++R WLPEL+ +PT +IH    AP S L    + L  NYP PIV  
Sbjct: 421 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGL 480

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 481 DEAKARLHEALSQMWQLEAAS 501


>gi|5524201|gb|AAD44161.1|AF130423_1 cryptochrome 1 [Solanum lycopersicum]
 gi|8101442|gb|AAF72555.1|AF130424_1 cryptochrome 1 [Solanum lycopersicum]
          Length = 679

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 152/484 (31%), Positives = 226/484 (46%), Gaps = 46/484 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYASLLQVQ 69
           +VW R DLR+ DN AL A        VIAVFI  PE+   H    R S + +  SL  + 
Sbjct: 8   IVWFRRDLRVEDNPALAAGVRA--GAVIAVFIYAPEE-EGHYYPGRVSRWWLKQSLAHLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128
            SL   G      + +   DSI  L         T+LF+N  Y+ I+ VR  +  E    
Sbjct: 65  SSLKSLGTSLITKRST---DSISSLLEVVKSTGATQLFFNHLYDPISLVRDHRTKEILTA 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  + +   + +  ++ F +  +      +   LP P   ++G  
Sbjct: 122 QGISVRSFNADLLYEPWEVNDDEGRPFTTFSAFWEKCLSMPYDPEAPLLP-PKRIISGDA 180

Query: 189 T--PSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +  PS+   F D   +  + +       G  NA   L  F    +  Y + R       T
Sbjct: 181 SRCPSDNLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKADSATT 240

Query: 243 SQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           S LSP+L  G +S R+ +              N+  EE V+L +K           +  R
Sbjct: 241 SFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLK----------SIGLR 290

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+ R+ M+F       +P +       W  D    +AW+QG TG+P++DA MR+L   GW
Sbjct: 291 EYSRY-MSFNHPYSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGW 349

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           +H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D     RI
Sbjct: 350 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRI 409

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462
            NP   G + DP G ++R WLPEL  +PT++IH    AP S L+   + L  NYPLPIV+
Sbjct: 410 DNPQFVGYKCDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVE 469

Query: 463 HKKA 466
              A
Sbjct: 470 IDSA 473


>gi|20800469|gb|AAB28725.2| flavin-type blue-light photoreceptor [Arabidopsis thaliana]
          Length = 556

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 151/501 (30%), Positives = 237/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188

Query: 190 P--SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              ++   F D   +  + +    +  G  N    L  F    +  Y + R       TS
Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G +S R+ +              N   EE V+L +K           +  RE
Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461
           NP  +G +FDP G ++R WLPEL+ +PT +IH    AP S L    + L  NYPLPIV  
Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498


>gi|52695977|pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
           Arabidopsis Thaliana
 gi|52695978|pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
           Arabidopsis Thaliana With Amppnp Bound
          Length = 509

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 151/501 (30%), Positives = 237/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188

Query: 190 P--SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              ++   F D   +  + +    +  G  N    L  F    +  Y + R       TS
Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G +S R+ +              N   EE V+L +K           +  RE
Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461
           NP  +G +FDP G ++R WLPEL+ +PT +IH    AP S L    + L  NYPLPIV  
Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498


>gi|297197474|ref|ZP_06914871.1| deoxyribodipyrimidine photolyase [Streptomyces sviceus ATCC 29083]
 gi|297146740|gb|EDY60352.2| deoxyribodipyrimidine photolyase [Streptomyces sviceus ATCC 29083]
          Length = 321

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 101/255 (39%), Positives = 147/255 (57%), Gaps = 14/255 (5%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           GE      L  + +  +  Y +++D  A   TS+LSP+L  G LSP +  +R +      
Sbjct: 63  GETEGRRRLAVWLRSGLAAYEDRQDDLAGDATSRLSPHLHFGTLSPVELVHRARR----- 117

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQAWK 327
                 GA +++ +L WR+F+R ++A  P+          T+   W  +      ++AWK
Sbjct: 118 --AGGPGAEAFVRQLAWRDFHRQVLAARPAAAGADYR---TQHDRWRSERTAGDDIEAWK 172

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           +G TG+PI+DAAMRQL   GWMHNR R++TASFL K L VDWRIG  +F+  L+DGDLA+
Sbjct: 173 EGRTGYPIVDAAMRQLRHEGWMHNRGRLLTASFLTKTLYVDWRIGARHFLDLLVDGDLAN 232

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N   WQW A TG D+ P  R+ NP  Q KR+DP GT++R W+PEL  +    +H P    
Sbjct: 233 NQLNWQWMAGTGTDTRPN-RVLNPVAQAKRYDPDGTYVRRWVPELAALEGPAVHEPWKLR 291

Query: 448 DKNDLSLNYPLPIVD 462
             +  +L+YP P+V+
Sbjct: 292 GLDRAALDYPDPLVE 306


>gi|304571326|dbj|BAJ15781.1| cryptochrome1 [Cardamine alpina]
          Length = 681

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 149/501 (29%), Positives = 238/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 3   IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 61  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 117

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 118 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 176

Query: 190 PS-NIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + P  F+   +      +   +  G  NA   L  F    +  Y + R       TS
Sbjct: 177 KCVSDPLVFEDELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G +S R+ +              N+  EE V+L +K           +  RE
Sbjct: 237 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 286

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 287 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 345

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 346 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 405

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI--V 461
           NP  +G +FDP G ++R WLPEL+ +PT++IH    AP S L    + L  NYP P+  +
Sbjct: 406 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGL 465

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 466 DEAKARLHEALSQMWQLEAAS 486


>gi|297813243|ref|XP_002874505.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320342|gb|EFH50764.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 690

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 152/502 (30%), Positives = 237/502 (47%), Gaps = 47/502 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+ 
Sbjct: 14  NIVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 71

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  
Sbjct: 72  SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 128

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V
Sbjct: 129 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDV 187

Query: 189 TP--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +   S+   F D   +  + +       G  NA   L  F    +  Y + R       T
Sbjct: 188 SKCVSDPLVFEDDSERGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 247

Query: 243 SQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           S LSP+L  G +S R+ +              N   EE V+L +K           +  R
Sbjct: 248 SFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLR 297

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+ R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW
Sbjct: 298 EYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGW 356

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           +H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI
Sbjct: 357 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRI 416

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV- 461
            NP  +G +FDP G ++R WLPEL+ +PT +IH    AP S L    + L  NYP PIV 
Sbjct: 417 DNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVG 476

Query: 462 -DHKKA-CHHTLNQYYAAKKQS 481
            D  KA  H  L+Q +  +  S
Sbjct: 477 LDEAKARLHEALSQMWQLEAAS 498


>gi|218245570|ref|YP_002370941.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
 gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
          Length = 488

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 142/486 (29%), Positives = 244/486 (50%), Gaps = 49/486 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASL 65
           L+W RNDLR+ D++ ++ A     A++I  +     Q++            +S F+  S+
Sbjct: 9   LIWYRNDLRLHDHQPMFQAVKQK-AQIIPFYCFDNRQFKTTSFGFPKTGNFKSQFLLQSI 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++K+L Q G      +   + + I  +   C +  +  ++++++    E++ +  LEK
Sbjct: 68  DNLRKNLQQLGSNLVVRR--GYPEKI--IPEICKELAIDAVYFHQEVTSEEIKVETALEK 123

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-IQNLVQADLRSLPVPAIR 183
            L Q  V    F  + L  P  +     ++ +++T FRK +  ++L+ +   + P P   
Sbjct: 124 ALTQMGVQLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINS---TFPTPKKL 180

Query: 184 LTGP-VTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFC--KEKVYYYVEQR 234
            + P +   NIP   +   +  +        F  GE   +  L ++   K ++  Y E R
Sbjct: 181 PSLPNLDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNRLKDYKETR 240

Query: 235 -DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREFYR 292
            ++     +S+ SP+L++G LSPR  +  + +  ++   + K+ +  WL  EL+WR+++R
Sbjct: 241 NEMLGSDYSSKFSPWLALGCLSPRYIYEEVTKYELE---RVKNDSTYWLIFELLWRDYFR 297

Query: 293 HLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            + A      FY S   G   +PW E  +W +     Q W+ G TG+P++DA MR+L   
Sbjct: 298 FICAKHGNKVFYSSGLQGLN-LPWKE--DWQR----FQLWQTGNTGYPLVDANMRELAAT 350

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+M NR R   ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   F
Sbjct: 351 GFMSNRGRQNVASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARG-F 409

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           R FN   Q K +DP+G ++RHWLPEL  +P   IH P             +L ++YP PI
Sbjct: 410 RYFNIPKQSKDYDPKGNYLRHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRPI 469

Query: 461 VDHKKA 466
           VD  K+
Sbjct: 470 VDFFKS 475


>gi|7267534|emb|CAB78016.1| Arabidopsis thaliana flavin-type blue-light photoreceptor
           (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226,
           N=1)
          Length = 716

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 151/501 (30%), Positives = 236/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188

Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              ++   F D   +  + +       G  N    L  F    +  Y + R       TS
Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G +S R+ +              N   EE V+L +K           +  RE
Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461
           NP  +G +FDP G ++R WLPEL+ +PT +IH    AP S L    + L  NYPLPIV  
Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498


>gi|18413170|ref|NP_567341.1| CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/
           protein homodimerization/ protein kinase [Arabidopsis
           thaliana]
 gi|332278156|sp|Q43125|CRY1_ARATH RecName: Full=Cryptochrome-1; AltName: Full=Blue light
           photoreceptor; AltName: Full=Protein BLUE LIGHT
           UNINHIBITED 1; AltName: Full=Protein ELONGATED HYPOCOTYL
           4; AltName: Full=Protein OUT OF PHASE 2; Short=OOP2
 gi|21700897|gb|AAM70572.1| AT4g08920/hy4 [Arabidopsis thaliana]
 gi|332657296|gb|AEE82696.1| cryptochrome-1 [Arabidopsis thaliana]
          Length = 681

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 151/501 (30%), Positives = 236/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188

Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              ++   F D   +  + +       G  N    L  F    +  Y + R       TS
Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G +S R+ +              N   EE V+L +K           +  RE
Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461
           NP  +G +FDP G ++R WLPEL+ +PT +IH    AP S L    + L  NYPLPIV  
Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498


>gi|260765927|gb|ACX49994.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765929|gb|ACX49995.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 684

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 152/501 (30%), Positives = 235/501 (46%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++  SL Q+  
Sbjct: 18  IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 76  SLRSLGTCLITKRST---DSVASLLXVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 132

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLP-PKKIISGDVS 191

Query: 190 PS-NIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                P  F+   +      +   +  G  NA   L  F    +  Y + R       TS
Sbjct: 192 KCVTDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 251

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G +S R+ +              N   EE V+L +K           +  RE
Sbjct: 252 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 301

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 302 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 360

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 361 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 420

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461
           NP  +G +FDP G ++R WLPEL+ +PT +IH    AP S L    + L  NYP PIV  
Sbjct: 421 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGL 480

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 481 DEAKARLHEALSQMWQLEAAS 501


>gi|260765931|gb|ACX49996.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 660

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 152/501 (30%), Positives = 235/501 (46%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++  SL Q+  
Sbjct: 18  IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 76  SLRSLGTCLITKRST---DSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQ 132

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLP-PKKIISGDVS 191

Query: 190 PS-NIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                P  F+   +      +   +  G  NA   L  F    +  Y + R       TS
Sbjct: 192 KCVTDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 251

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G +S R+ +              N   EE V+L +K           +  RE
Sbjct: 252 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 301

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 302 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 360

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 361 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 420

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461
           NP  +G +FDP G ++R WLPEL+ +PT +IH    AP S L    + L  NYP PIV  
Sbjct: 421 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGL 480

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 481 DEAKARLHEALSQMWQLEAAS 501


>gi|284041014|ref|YP_003390944.1| cryptochrome, DASH family [Spirosoma linguale DSM 74]
 gi|283820307|gb|ADB42145.1| cryptochrome, DASH family [Spirosoma linguale DSM 74]
          Length = 487

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 142/494 (28%), Positives = 234/494 (47%), Gaps = 46/494 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHF 60
           M+  L W RNDLR+ DN+    A  N+D +V+ VF+  P  + +H       +SA +++F
Sbjct: 1   MNRILYWFRNDLRLHDNEGFVRALENAD-QVLPVFVFDPRWFARHSQLEFRRMSAFRANF 59

Query: 61  IYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           +  S+  +++SL  +G  ++ +  + ++       L     +   T ++ +++    E  
Sbjct: 60  LLESVADLRQSLRSRGADLIVRVGKPADV------LAELAGEIGATAVYASKEVTHEETT 113

Query: 119 RDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           ++  L  +L+   +  + F  S L     +     Q+  V++ FR+ L +  +     +L
Sbjct: 114 QETKLSTKLKPLNIDIELFWMSTLYHVRDLPFTISQLPDVFSKFRQQLEKKAIIRPAFTL 173

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------------FPIGEQNALHILRKFC-- 223
           P   I L   + P  IP      F   D              F  GE  AL  L ++   
Sbjct: 174 PT-RIELVPNIDPGAIPTLSTLGFNDTDIRLILQPDARGAVPFSGGETVALARLDRYLWQ 232

Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            + +  Y E R+ +     +S+ S +L+ G LSPR+ +  +     +   + ++ +  WL
Sbjct: 233 TDLIATYKETRNGLLGEDYSSKFSAWLATGCLSPRKIYEEVTRYETE---RVRNESTYWL 289

Query: 283 -NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
             EL+WR+F+R +   + +    +  I       + +D  L Q W +G+TG P IDA MR
Sbjct: 290 IFELLWRDFFRFVALKFGTRIFKRSGIKHDLHKTYGRDEDLFQKWAEGHTGIPFIDANMR 349

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           ++N  G+M NR R   ASFLV DL +DW  G  YF S+L+D D  SN G W + A  GND
Sbjct: 350 EMNATGFMSNRGRQNVASFLVSDLGLDWTWGAAYFESKLIDYDPCSNWGNWNYVAGVGND 409

Query: 402 SVPYF----RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451
              +     R FN   Q  R+D QG +++HWLPEL  VP + +H   S   +        
Sbjct: 410 PRQFSNGQPRYFNILSQALRYDEQGDYVKHWLPELAKVPNEQVHLAWSLSSEQQETYGVV 469

Query: 452 LSLNYPLPIVDHKK 465
           L  +YPLP+VD  K
Sbjct: 470 LGQDYPLPVVDPNK 483


>gi|442529|gb|AAB28724.1| flavin-type blue-light photoreceptor [Arabidopsis thaliana]
          Length = 681

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 151/501 (30%), Positives = 236/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188

Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              ++   F D   +  + +       G  N    L  F    +  Y + R       TS
Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G +S R+ +              N   EE V+L +K           +  RE
Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461
           NP  +G +FDP G ++R WLPEL+ +PT +IH    AP S L    + L  NYPLPIV  
Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498


>gi|262051762|ref|ZP_06023980.1| hypothetical protein SA930_1845 [Staphylococcus aureus 930918-3]
 gi|259160373|gb|EEW45399.1| hypothetical protein SA930_1845 [Staphylococcus aureus 930918-3]
          Length = 457

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 175/340 (51%), Gaps = 18/340 (5%)

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
                 +N   + Y V+T F K     L   D+    + +       +P ++  F D  F
Sbjct: 129 FKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLV-FDDIAF 187

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
            +      I EQN     + F  + +  Y   RD      TSQLS  L+ G+L   + +N
Sbjct: 188 GSS----QIIEQNKW---QHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFN 240

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L   + +     ++   +++ ELI+REFY  LM  YP     + F P   +I+W+++  
Sbjct: 241 DLLARYDE----DEANYEAFIRELIFREFYYVLMTQYPETSY-QAFKPKYRQIKWSQNEA 295

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
              AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL KDL +DW  GE++F   L+
Sbjct: 296 DFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLI 355

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN  GWQW+ASTG D+V YFR+FNP  Q +RFD +  +I+ +LP  N +  +Y+H
Sbjct: 356 DYDAASNIHGWQWSASTGTDAVLYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLH 415

Query: 442 APHS-----WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
                    +    +L  +YP  +VDH++     L  + A
Sbjct: 416 DTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKA 455


>gi|23954324|emb|CAC82538.1| Cryptochrome 2 [Oryza sativa Indica Group]
          Length = 651

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/473 (28%), Positives = 227/473 (47%), Gaps = 28/473 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    D  V+ VFI  P    Q         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNPALAAAAR--DGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128
           SL   G  +      S  +  +  +DS       T+L YN  Y+ ++ VR DK+ ++   
Sbjct: 66  SLESLGCPLVLIRAESTLEALLRCIDSVG----ATRLVYNHLYDPVSLVRDDKIKKELSA 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAIR 183
             +  +SF+  +L  P  I + +   +  +  + +  ++  +      A  + +P P + 
Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPGLE 181

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  ++        ++ + +       G +NA  +L +F    +  Y +       
Sbjct: 182 SVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
             TS LSPYL  G +S R+ +  ++ + +    +  S A      ++  +  RE+ R+L 
Sbjct: 242 ATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     K  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+
Sbjct: 302 FNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +QG
Sbjct: 361 IISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462
           +++DP G ++R W+PEL  +PT++IH    AP   L+    +L  NYP PIVD
Sbjct: 421 QKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVD 473


>gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
 gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
          Length = 486

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 149/503 (29%), Positives = 237/503 (47%), Gaps = 57/503 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65
           L+W RNDLRI D++ LY A     A +I  +     Q++       ++      F+  S+
Sbjct: 7   LIWYRNDLRIHDHEPLYQAIKQG-ALIIPFYCFDIRQFKTTSFGFPKTGNFRGQFLLESV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++KSL   G      Q   + + I  +     Q  +  ++++ +    E   +  +EK
Sbjct: 66  TDLKKSLQDLGSNLIIRQ--GYPEKI--IPELIKQLEIDAVYFHEEVTSEETDIENTVEK 121

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-------LVQADLRSL 177
            L+   V  K F  + L     +     ++ +V+T FRK + +N       +    LRSL
Sbjct: 122 ALKPLNVTFKGFWGATLYHWDDLPFEVSKLPEVFTSFRKKVEKNSTVNPILISPRKLRSL 181

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQA--IDPM----FPIGEQNALHILRKFCKEK--VYY 229
           P         +   N+P   +   +    D      F  GE   +  L  +  E+  +  
Sbjct: 182 P--------DIEVGNVPSLEELELEKPKYDSRGVLEFKGGETEGIQRLNNYFWERNCLKE 233

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y E R+ +     +S+ SP+L+ G LSPR  +  + +++ +  IK  S  +  + EL+WR
Sbjct: 234 YKETRNGMLGADYSSKFSPWLANGCLSPRYIYEEV-QKYEEKRIKNNS-TYWLIFELLWR 291

Query: 289 EFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           +++R + A      FY S   G   IPW E      D    + W++G TG+P++D  MR+
Sbjct: 292 DYFRFISAKHGNKIFYQSGLQGVD-IPWKE------DQERFKLWQEGNTGYPLVDGNMRE 344

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G+M NR R   ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+
Sbjct: 345 LAATGFMSNRGRQNVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDA 404

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456
              FR FN   Q K +DP+G +I+HWLPEL  +P Q IH P     +        + +NY
Sbjct: 405 RG-FRYFNIPKQSKDYDPKGEYIKHWLPELKMIPGQKIHEPWKLSQEEQKRYNVRIGVNY 463

Query: 457 PLPIVDHKKACHHTLNQYYAAKK 479
           P P+VD  K+       Y AA K
Sbjct: 464 PRPVVDFFKSVKANEKMYNAAIK 486


>gi|40644276|emb|CAD35495.1| cryptochrome 2 [Oryza sativa Indica Group]
          Length = 651

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/473 (28%), Positives = 227/473 (47%), Gaps = 28/473 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    D  V+ VFI  P    Q         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNPALAAAAR--DGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128
           SL   G  +      S  +  +  +DS       T+L YN  Y+ ++ VR DK+ ++   
Sbjct: 66  SLESLGCPLVLIRAESTLEALLRCIDSVG----ATRLVYNHLYDPVSLVRDDKIKKELSA 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAIR 183
             +  +SF+  +L  P  I + +   +  +  + +  ++  +      A  + +P P + 
Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPGLE 181

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  ++        ++ + +       G +NA  +L +F    +  Y +       
Sbjct: 182 SVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
             TS LSPYL  G +S R+ +  ++ + +    +  S A      ++  +  RE+ R+L 
Sbjct: 242 ATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     K  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+
Sbjct: 302 FNFP-FTREKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +QG
Sbjct: 361 IISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462
           +++DP G ++R W+PEL  +PT++IH    AP   L+    +L  NYP PIVD
Sbjct: 421 QKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVD 473


>gi|738308|prf||1924377A blue light photoreceptor
          Length = 681

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 151/501 (30%), Positives = 236/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 130 GIAVRSFNADLLYQPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188

Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              ++   F D   +  + +       G  N    L  F    +  Y + R       TS
Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G +S R+ +              N   EE V+L +K           +  RE
Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461
           NP  +G +FDP G ++R WLPEL+ +PT +IH    AP S L    + L  NYPLPIV  
Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498


>gi|148909202|gb|ABR17701.1| unknown [Picea sitchensis]
          Length = 655

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 152/491 (30%), Positives = 233/491 (47%), Gaps = 50/491 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + +  +VW R DLR+ DN AL A        VI ++I +PE+  Q+        ++  SL
Sbjct: 2   STNCSIVWFRRDLRVEDNPALAAGVRA--GAVIVLYIWSPEEEGQYYPGRVSRWWLKQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL   G      + +N   SI  +         T+LFYN  Y+   + RD  L++
Sbjct: 60  AHLDSSLRNLGARLITKRSTN---SISAILQVVQATGATQLFYNHLYDPLSLVRDHKLKQ 116

Query: 126 RLQHR-VICKSFDDSVLLPPGSILN---HALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L  R ++ +SF+  +L  P  + +   HA   ++ Y  + K L  N+    L  L  P 
Sbjct: 117 DLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDY--WNKCL--NMPYDPLAPLLPPK 172

Query: 182 IRLTGPVT--PSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRD 235
             + G V+  PS+     D   +A + +       G  +A   L  F    +  Y   R 
Sbjct: 173 RIVAGEVSNCPSDDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYAINRQ 232

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLK--------------EEFVDLLIKPKSGAFSW 281
                 TS LSP+L  G LS ++ ++ L+              E+ V+L +K        
Sbjct: 233 KADSATTSLLSPHLHFGELSVKKVFHLLRIRQVLWANEGNTSGEQSVNLFLK-------- 284

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
              +  RE+ R+L   +PS    KP +       W  DS   ++W+QG TG+P++DA MR
Sbjct: 285 --SIGLREYSRYLSFNFPS-SHEKPLLSHLNYFPWRVDSDYFKSWRQGRTGYPLVDAGMR 341

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL  +  GWQ+ +    D
Sbjct: 342 ELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLECDALGWQYISGCLPD 401

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--N 455
                RI NP  +G +FDP G ++R WLPEL  +PT++IH    AP + L    + L  N
Sbjct: 402 GREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHPWDAPRAVLQAAGVELGSN 461

Query: 456 YPLPIVDHKKA 466
           YPLPIV+   A
Sbjct: 462 YPLPIVEISTA 472


>gi|78217441|gb|ABB36796.1| cryptochrome 1 [Nicotiana sylvestris]
          Length = 681

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 151/490 (30%), Positives = 227/490 (46%), Gaps = 46/490 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYA 63
           +     +VW R DLR+ DN AL A        VIAVFI  PE+   H    R S + +  
Sbjct: 2   SGSGCSIVWFRRDLRVEDNPALAAGVRA--GAVIAVFIWAPEE-EGHYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122
           SL  +  SL   G      + +   DSI  L         T+LF+N  Y+ I+ VR  + 
Sbjct: 59  SLAHLDSSLKSLGTSLVTKRST---DSISSLLEIVKSTGATQLFFNHLYDPISLVRDHRA 115

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            E      +  +SF+  +L  P  + +   + +  ++ F +  +      +   LP P  
Sbjct: 116 KEVLTAQGISVRSFNADLLYEPWEVNDEEGRPFTTFSAFWEKCLSMPYDPEAPLLP-PKR 174

Query: 183 RLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDI 236
            + G  +   S+   F D   +  + +       G  NA   L  F    +  Y + R  
Sbjct: 175 IIPGDASRCSSDSLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRK 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWL 282
                TS LSP+L  G +S R+ +              N+  EE V+L +K         
Sbjct: 235 ADSATTSFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLK--------- 285

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             +  RE+ R+ M+F       +P +       W  D    +AW+QG TG+P++DA MR+
Sbjct: 286 -SIGLREYSRY-MSFNHPYSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRE 343

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D 
Sbjct: 344 LWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDG 403

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NY 456
             + RI NP   G + DP G ++R WLPEL+ +PT++IH    AP S L+   + L  NY
Sbjct: 404 REFDRIDNPQFVGYKCDPHGEYVRRWLPELSRLPTEWIHHPWNAPESVLEAAGIELGSNY 463

Query: 457 PLPIVDHKKA 466
           PLPIV+   A
Sbjct: 464 PLPIVEIDSA 473


>gi|86608285|ref|YP_477047.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 486

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 147/509 (28%), Positives = 240/509 (47%), Gaps = 72/509 (14%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR------QSHFIYAS 64
           L+W R DLR+ D++ L  AC    + +I ++   P Q+ +  +  R      +  F+  S
Sbjct: 4   LLWFRTDLRLLDHQPLTRACQQG-SPLIPLYCLDPRQFGETSLGLRPRTSPFRGQFLLES 62

Query: 65  LLQVQKSLSQKG--IVFQYHQCSNFDDSI--EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           L  +++ L  +G  +V +  Q      ++  EW         V  ++ + +    E    
Sbjct: 63  LADLRQQLRSRGSDLVIRQGQPEQVIPTLAQEW--------GVEAVYAHEEVGTEEKEVA 114

Query: 121 KLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------ 173
             +E+ L+   I    D    L  P  +     Q+ +++T FRK +  +    D      
Sbjct: 115 AAVERALRSLGIRLQVDWGHTLYHPEDLPFCLSQLPELFTRFRKQVEGSTPIRDPLPIPS 174

Query: 174 -------LRSLPVPAIRLTGPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRK---F 222
                  L   P+P +   G  +P+  PR  F Y           G   A H   +   +
Sbjct: 175 IPPLPSGLDPGPLPTLASLGLSSPARDPRARFTY----------TGGSTAAHARLQTYFW 224

Query: 223 CKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
             +++  Y E R+ +     +S+LS +L++G +SPR  +  +K    +   + ++ +  W
Sbjct: 225 DLDRLRIYKETRNGMLDPDDSSRLSAWLALGCISPRTVYAEVKRYEQE---RVRNESTYW 281

Query: 282 LN-ELIWREFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
           L  EL+WR+++R ++A      F PS   G P       I W +D    QAW +G TG+P
Sbjct: 282 LVFELLWRDYFRFILAKHGAKLFRPSGIQGIP-------IPWQQDWPRFQAWCRGETGYP 334

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           ++DA MR+L   G+M NR R   ASFL K+L +DWR+G E+F S L+D D+ASN G W +
Sbjct: 335 LVDANMRELAATGFMSNRGRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVASNYGNWNY 394

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--- 451
            A  GND+   FR F+   Q + +DP+G ++RHWLPEL  +P   IH P+          
Sbjct: 395 TAGVGNDARG-FRYFHIPKQSREYDPKGDYLRHWLPELAGIPGDKIHEPYRLTAAEQKQF 453

Query: 452 ---LSLNYPLPIVDHKKACHHTLNQYYAA 477
              L ++YP P+VD +K+       Y AA
Sbjct: 454 GVRLGVDYPRPLVDLEKSLAANRRVYEAA 482


>gi|290962800|ref|YP_003493982.1| deoxyribodipyrimidine photolyase [Streptomyces scabiei 87.22]
 gi|260652326|emb|CBG75459.1| putative deoxyribodipyrimidine photolyase [Streptomyces scabiei
           87.22]
          Length = 453

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/468 (29%), Positives = 221/468 (47%), Gaps = 41/468 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V    DLR+ D+  L AA   S  +V+ +F+   +       +  +  F+   L 
Sbjct: 1   MNVSVVLFTCDLRLHDHPPLRAALDGS-RQVVPLFVRDRDVTGAGFAAPNRLAFLADCLR 59

Query: 67  QVQKSLSQKG---------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            +   L ++G         +V +  + +   D+    D   L   V+   Y ++ E    
Sbjct: 60  DLDTGLRERGGRLVVRSGDVVEEVCKVAAEADA----DEVHLAADVSA--YAQRREERLR 113

Query: 118 RRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLR 175
           R  +    RL  H  +  + D      PG++L  +   + V+TP F     Q L +A   
Sbjct: 114 RALEAEGVRLHVHATVTSAVD------PGAVLPASTDHFAVFTPYFGHWSRQRLREA--- 164

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQR 234
           S    A+ +   V    +P         + P +   GE         + +  +  Y ++ 
Sbjct: 165 SAAPRAVHVPDGVGSEELPSRAG--LSGVSPGLASGGEIEGRSRFSAWLRSGIEAYEDRH 222

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D  A   TS+LSP+L  G LSP +  +R +            GA +++ +L WR+F R +
Sbjct: 223 DDLAGDATSRLSPHLHFGTLSPVELVHRSRR-------AGGPGAEAFVRQLAWRDFNRQV 275

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +A  P+           +   W       +AW+ G TG+P++DAAMRQL   GWMHNR R
Sbjct: 276 LAARPAAAKADYR---AKHDRWRTVPDEAEAWRAGRTGYPVVDAAMRQLRHEGWMHNRGR 332

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           ++TASFL K L +DWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  RI NP  Q
Sbjct: 333 LLTASFLAKTLYIDWRVGARHFLDLLVDGDVANNQLNWQWMAGTGTDTRPN-RILNPVTQ 391

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
            KR+DP G ++R W+PEL ++    +H P      +  +L+YP P+V+
Sbjct: 392 AKRYDPDGEYVRRWVPELADLAAPAVHEPWKLRGLDRAALDYPEPVVE 439


>gi|170079261|ref|YP_001735899.1| DNA photolyase [Synechococcus sp. PCC 7002]
 gi|169886930|gb|ACB00644.1| DNA photolyase [Synechococcus sp. PCC 7002]
          Length = 514

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 234/494 (47%), Gaps = 42/494 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHFIYASL 65
           L+W R DLR+ D++ L  A     A++   +   P  +   G+      A +  F+  ++
Sbjct: 7   LLWYRRDLRLHDHQPLQEALAQQ-AQIFPFYCFDPRGFGSIGLDFPKTGAFRGQFLREAI 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++++L  KG      Q    D   + +   C Q ++  ++ +R+    E R ++ L +
Sbjct: 66  QDLRQNLRAKGSDLIVRQ----DIPEKLIPDLCQQWQIDVVYCHREVTAEETRVERKLRQ 121

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            LQ + V  ++F  + L  PG +     ++ +V+T FRK + +    A     P     L
Sbjct: 122 ALQEQGVRVETFWGTTLHDPGDLPFGINEVPEVFTQFRKDVEKYAAIASPVPTPTQLPPL 181

Query: 185 TGPVTPSNIPRFFDY--PFQAIDP--MFPI--GEQNALHILRKFCKE--KVYYYVEQRD- 235
              V P  IP   D   P   IDP  + P+  GE   +  L+ +  E  ++  Y E R+ 
Sbjct: 182 PETVAPGEIPSLQDLGLPEPTIDPRGVLPLKGGETAGMKRLQAYFWEGDRLKVYKETRNG 241

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ SP+L++G LS R    ++ E     +    +  +  + EL+WR+++R + 
Sbjct: 242 LLGADYSSKFSPWLALGCLSARYIAAQVAEYEQKRIAN--NSTYWLIFELLWRDYFRWIC 299

Query: 296 A------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           A      F P    G        KI W +D    + W+ G TG P +DA MR+L   G+M
Sbjct: 300 AKHGNQIFQPEGLQGV-------KIPWKQDHEAFELWRTGQTGIPFVDANMRELLYTGFM 352

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            NR R    SFL K+L +DWR G  +F SQL+D D+ SN G W + A  GND+   FR F
Sbjct: 353 SNRGRQNVGSFLTKNLGIDWRWGAAWFESQLIDYDVCSNWGNWNYTAGVGNDARG-FRYF 411

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKND----LSLNYPLPIVDH 463
           N   Q K +DPQG ++RHWLPEL  +P + IH P   S  +  D    L   YP P+VD 
Sbjct: 412 NIPKQAKDYDPQGDYVRHWLPELAALPGEQIHQPWRLSVKELGDRQIILGETYPKPMVDL 471

Query: 464 KKACHHTLNQYYAA 477
           + +       Y  A
Sbjct: 472 QTSVQENERIYQKA 485


>gi|238618755|ref|YP_002913580.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4]
 gi|238379824|gb|ACR40912.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4]
          Length = 433

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 146/476 (30%), Positives = 219/476 (46%), Gaps = 51/476 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +  L + V  ++ N  Y      RD+ + +  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKN--LLKDVDAVYLNEDYTPFSKMRDERIRRYCE 116

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F      N+V+      PV        
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTF-----YNVVKNKQIRKPVQ------- 159

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              +N   ++         + P  GE+       K          +++D  A    + LS
Sbjct: 160 ---NNYTNYYKNSLGDEHELPPRQGERGGRKEGIKLIGRARQIDYDRKDFVAEDNRTFLS 216

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G LS R+ +  L +  V             + +L WR+FY  L+A+Y      +P
Sbjct: 217 PHLKFGTLSIREVYYSLLDSQV------------IIRQLYWRDFY-TLLAYYNERVFHEP 263

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +  L QAW +G TG+PIIDA MRQLN  G + NR+RM+TA FLVK LL
Sbjct: 264 LKREYNCIEWENNERLFQAWVEGKTGYPIIDAGMRQLNRTGDIPNRVRMLTAFFLVKVLL 323

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +++
Sbjct: 324 IDWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVK 381

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
            W+ EL +   + IH  + +  K     NYP  IVD +   +     Y   +K  +
Sbjct: 382 RWVDELESYDAEIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|304571302|dbj|BAJ15769.1| cryptochrome1 [Cardamine nipponica]
 gi|304571304|dbj|BAJ15770.1| cryptochrome1 [Cardamine nipponica]
 gi|304571308|dbj|BAJ15772.1| cryptochrome1 [Cardamine nipponica]
 gi|304571310|dbj|BAJ15773.1| cryptochrome1 [Cardamine nipponica]
 gi|304571312|dbj|BAJ15774.1| cryptochrome1 [Cardamine nipponica]
 gi|304571322|dbj|BAJ15779.1| cryptochrome1 [Cardamine nipponica]
 gi|304571324|dbj|BAJ15780.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 149/501 (29%), Positives = 237/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 3   IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 61  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 117

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 118 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 176

Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              S+   F D   +  + +       G  NA   L  F    +  Y + R       TS
Sbjct: 177 KCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+   G +S R+ +              N+  EE V+L +K           +  RE
Sbjct: 237 FLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 286

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 287 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 345

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 346 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 405

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI--V 461
           NP  +G +FDP G ++R WLPEL+ +PT++IH    AP S L    + L  NYP P+  +
Sbjct: 406 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGL 465

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 466 DEAKARLHEALSQMWQLEAAS 486


>gi|304571314|dbj|BAJ15775.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 149/501 (29%), Positives = 237/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 3   IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 61  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 117

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 118 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 176

Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              S+   F D   +  + +       G  NA   L  F    +  Y + R       TS
Sbjct: 177 KCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+   G +S R+ +              N+  EE V+L +K           +  RE
Sbjct: 237 FLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 286

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 287 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 345

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 346 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 405

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI--V 461
           NP  +G +FDP G ++R WLPEL+ +PT++IH    AP S L    + L  NYP P+  +
Sbjct: 406 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGL 465

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 466 DEAKARLHEALSQMWQLEAAS 486


>gi|255581443|ref|XP_002531529.1| DNA photolyase, putative [Ricinus communis]
 gi|223528846|gb|EEF30848.1| DNA photolyase, putative [Ricinus communis]
          Length = 640

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 229/485 (47%), Gaps = 55/485 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    D  ++ VFI  P++  Q         ++  SL  +  
Sbjct: 7   IVWFRRDLRIEDNPALAAAAR--DGCILPVFIWCPQEEGQFYPGRVSRWWLKQSLAHLGH 64

Query: 71  SLSQKG----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125
           SL   G    ++  +   +   D +  + +       TK+ +NR Y+ ++ VR   + EK
Sbjct: 65  SLKSLGAELLLIKTHSTLAALLDCVNVIGA-------TKVVFNRLYDPVSLVRDHNIKEK 117

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPA 181
            ++  +  +S++  +L  P  I + +   +  +  +    +   ++  +  LP    VPA
Sbjct: 118 LVELGISIQSYNGDLLYEPWEIYDESGHAFMTFDQYWDKCLHMQMEP-VSHLPPWRLVPA 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                  +   +    D   ++ + +       G  NA   L +F ++ +  Y ++R   
Sbjct: 177 AETVNSCSVEELG-LEDEAEKSSNSLLGRAWSPGWSNADKALAEFVEQHLVNYSKKRLEV 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283
               TS LSPYL  G LS R+ +              N +  E V L +K          
Sbjct: 236 GGNSTSLLSPYLHFGELSVRKVFHCVQMKQLLWAKEENSVGRESVTLFLK---------- 285

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            +  RE+ R+L   +P     + F+       WN +    +AW+QG TG+P++DA MR+L
Sbjct: 286 SIGLREYSRYLCFNFP-YTHERSFLSNLRLFPWNANQAHFKAWRQGRTGYPLVDAGMREL 344

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GW+HN++R+I +SF VK LL+ WR G +YF   LLD D+ S+  GWQ+ +    D  
Sbjct: 345 WATGWIHNKIRVIVSSFAVKALLLPWRWGMKYFWDTLLDADMESDILGWQYISGGLPDGH 404

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457
              R+ +P IQG +FD  G ++R WLPEL  +PT++IH    AP + L    + L  NYP
Sbjct: 405 ELERLDSPEIQGSKFDADGEYVRQWLPELARMPTEWIHHPWDAPLAVLRAAGVELGQNYP 464

Query: 458 LPIVD 462
            PIV+
Sbjct: 465 KPIVE 469


>gi|289551448|ref|YP_003472352.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180979|gb|ADC88224.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 424

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/287 (37%), Positives = 153/287 (53%), Gaps = 12/287 (4%)

Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA 203
           P   LN   Q YKV+T F KA    L Q   R  P    +L   +  ++     +   + 
Sbjct: 131 PSRTLNQQGQPYKVFTSFYKANRPQLRQR--RRYPYQLDKLKQQIINAD-----NTSVKK 183

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           +     IGE  +    + F    + +Y   R+      TSQLS  L+ G L   +   +L
Sbjct: 184 VTEHINIGEAKSQQQWQAFLNNNIEHYQYYREYLPETLTSQLSIALAYGFLDINEIMRQL 243

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            E + D     +    +++ EL++REFY  LM +YP       F    + I W+++    
Sbjct: 244 LERYHD----NEENYEAFIRELLFREFYYVLMVYYPETA-HTSFNDKYKHITWSENQSDF 298

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            AWK+G TG+PIIDAAM +L   G+MHNR+RM+TA FL K+L +DW  GE YF + L+D 
Sbjct: 299 NAWKEGRTGYPIIDAAMHELKQTGFMHNRMRMVTAQFLTKELFIDWTWGENYFKNLLIDY 358

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +   ++H  P
Sbjct: 359 DAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDKKVYTLKHTCP 405


>gi|146276865|ref|YP_001167024.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555106|gb|ABP69719.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 470

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 140/474 (29%), Positives = 215/474 (45%), Gaps = 25/474 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+TDN  +  A       ++ VFI  PE  R       +      +  Q  +
Sbjct: 7   ILWFRRDLRLTDNPMVREAAATGR-PLVPVFILDPETERLGAAPKWRLGLAVEAFAQALE 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  + I+ +         ++E L     +     + ++R  E     RD+ ++  L+ +
Sbjct: 66  RLGSRLILRR-------GPALEVLGRLAAETGALGVRWSRLCEPGWRSRDEGVKAGLKRQ 118

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAI-RLT 185
            I  +S     L  P  +       Y+V+TPF K++    V A +     L  P +   +
Sbjct: 119 GIAAESHAGHTLFEPWEVRTGQGGFYRVFTPFWKSVKDRPVPAPVAAPAGLRAPTVWPRS 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    + R  +     +     +GE  A   L +F    V  Y   RD      TS+L
Sbjct: 179 DRLADWGLARAMNRGAAVVARHVAVGEAAAAERLARFLDNPVDRYAAGRDRTDQAVTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +S R  W+      +    + ++GA  +L EL+WREF  HL+   P +    
Sbjct: 239 SENLTYGEISARTIWH----AGLRARAEGRAGAEKFLQELVWREFAWHLLYHTPEIASRN 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               W +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L K L
Sbjct: 295 WRGEW-DAFPWRADNAEAERWRRGMTGEPFVDAAMRELFLTGTMHNRARLIAGSYLTKHL 353

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFR+FNP  Q ++FDP G + 
Sbjct: 354 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRVFNPATQAEKFDPDGAYR 413

Query: 426 RHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           R ++ EL+  P       +   P SW    D    YP P+V   +     L  Y
Sbjct: 414 RRFIAELSPDPGPEALSFFEAVPRSWGLAPDQC--YPRPVVGLAEGRARALAAY 465


>gi|304571316|dbj|BAJ15776.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 149/501 (29%), Positives = 236/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 3   IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 61  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 117

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--P 187
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G  P
Sbjct: 118 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVP 176

Query: 188 VTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              S+   F D   +  + +       G  NA   L  F    +  Y + R       TS
Sbjct: 177 KCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+   G +S R+ +              N+  EE V+L +K           +  RE
Sbjct: 237 FLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 286

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 287 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 345

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 346 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 405

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI--V 461
           NP  +G +FDP G ++R WLPEL+ +PT++IH    AP S L    + L  NYP P+  +
Sbjct: 406 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGL 465

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 466 DEAKARLHEALSQMWQLEAAS 486


>gi|313242055|emb|CBY34235.1| unnamed protein product [Oikopleura dioica]
          Length = 539

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 146/500 (29%), Positives = 235/500 (47%), Gaps = 51/500 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ---WRQHGISARQSHFIY 62
            + + L   R DLR+ DN +L  A  +   +++ VF+  PEQ    +    S     F+ 
Sbjct: 53  GVKIALFIFRRDLRLIDNTSLIQAIKDG-YRILPVFVFPPEQIDPEKNEWFSHPSVQFMC 111

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + + L ++ +  + H       ++E +         + + YN  Y +    RD  
Sbjct: 112 ESLNDLGRQLKEE-VDGKLHLF--MGGNLETIKKIKEVVNFSAIAYNEDYSVYARERDGE 168

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHAL----QMYKVYTPFRKALIQNLVQADLRSL 177
           +E+  + + V     +D  LLP     +H      + Y+V + F K  IQ     D+R  
Sbjct: 169 IEEWAESNNVEIIKEEDYGLLPIKDAWHHPKDGPPKPYRVLSIFFKH-IQKFY--DIRK- 224

Query: 178 PVPAIRLTGPVTPSNIPRF-FDYPFQAIDPMFPIGEQNA--------LHILRKFCKEKVY 228
             P        +     +F F +    ++ ++   E+ A        L  L K   +K Y
Sbjct: 225 --PESNFEFEASQFTQSKFSFKFSISKLNTLYNANEKLAERGGRLVGLIGLEKIKNKKDY 282

Query: 229 YYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
              E R+   ++ GT+++S +L  G +S R+ + R  E F +            + +L++
Sbjct: 283 N--ETRNFMHLKAGTTKMSAHLKFGTVSIREMYWRTAELFGE--------THDLIRQLVF 332

Query: 288 REFYRHLMAFYPSVCMGKPFIPWT-EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           R+FY  + +  P +  G        E+I W+ D  L  AW +G TGFP++DAA RQL  I
Sbjct: 333 RDFYLKIYSHNPELQRGTALQAGVDERIPWSDDEKLWTAWCEGMTGFPLVDAAQRQLKEI 392

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GW HNR+RM+T   L K  ++DWR G ++F   L+D D+ +N  GW W +STG D+VPYF
Sbjct: 393 GWQHNRMRMLTGCVLTKYFMIDWRKGMKFFYQNLVDADVFNNTAGWGWVSSTGPDAVPYF 452

Query: 407 R-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD--------KNDLSLNYP 457
           R  FNP IQ K+FD +G +I+ ++PEL +V    +   H W D        KN     YP
Sbjct: 453 RPPFNPWIQSKKFDLEGKYIKQYIPELADVSPADL---HKWGDASIRAKYKKNKKVQAYP 509

Query: 458 LPIVDHKKACHHTLNQYYAA 477
            P+V H +A  + +  Y  A
Sbjct: 510 APVVKHDEASKNAVYLYKKA 529


>gi|13605525|gb|AAK32756.1|AF361588_1 AT4g08920/hy4 [Arabidopsis thaliana]
          Length = 681

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 150/501 (29%), Positives = 235/501 (46%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       V A+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRA--GPVNALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 188

Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              ++   F D   +  + +       G  N    L  F    +  Y + R       TS
Sbjct: 189 KCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTS 248

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G +S R+ +              N   EE V+L +K           +  RE
Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLK----------SIGLRE 298

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 299 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 357

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 358 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV-- 461
           NP  +G +FDP G ++R WLPEL+ +PT +IH    AP S L    + L  NYPLPIV  
Sbjct: 418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGL 477

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 478 DEAKARLHEALSQMWQLEAAS 498


>gi|113197027|gb|ABI31780.1| cryptochrome 1 protein [Brassica rapa]
          Length = 704

 Score =  183 bits (464), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 156/524 (29%), Positives = 241/524 (45%), Gaps = 69/524 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++  SL Q+  
Sbjct: 13  IVWFRRDLRVEDNPALAAAVRA--GPVIAVFVWAPEEEGHYQPGRVSRWWLKNSLAQLDS 70

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L   
Sbjct: 71  SLRSLGTCLITKRST---DSVASLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKDALTAE 127

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPF-----------------RKALIQNLVQ- 171
            I  KSF+  +L  P  + +   + + ++  F                  K +I  L+  
Sbjct: 128 GIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGLLLH 187

Query: 172 ---ADLRSLP--VPAIRLTGPVTP--SNIPRFFDYPFQAIDPMFP----IGEQNALHILR 220
              +++ S P  +    L G V+   ++   F D   +  + +       G  NA   L 
Sbjct: 188 HTLSEIVSYPLLITLFVLAGDVSKCVADTLIFEDESEKGSNALLARAWSPGWSNADKALT 247

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEE 266
            F    +  Y + R       TS LSP+L  G +S R+ +              N+  EE
Sbjct: 248 TFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAGEE 307

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
            V+L +K           +  RE+ R++   +P     +P +   +   W  D +  +AW
Sbjct: 308 SVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 356

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           +QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL 
Sbjct: 357 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 416

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----A 442
           S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT++IH    A
Sbjct: 417 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNA 476

Query: 443 PHSWLDKNDLSL--NYPLPIV--DHKKA-CHHTLNQYYAAKKQS 481
           P S L    + L  NYP PIV  D  KA  H  L+Q +  +  S
Sbjct: 477 PESVLQAAGIELGSNYPRPIVGLDEAKARLHEALSQMWQLEAAS 520


>gi|304571306|dbj|BAJ15771.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 148/501 (29%), Positives = 237/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 3   IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 61  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 117

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 118 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 176

Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              S+   F D   +  + +       G  NA   L  F    +  Y + R       TS
Sbjct: 177 KCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+   G +S R+ +              N+  EE V+L +K           +  RE
Sbjct: 237 FLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 286

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA M++L   GW+
Sbjct: 287 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMKELWATGWL 345

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 346 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 405

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI--V 461
           NP  +G +FDP G ++R WLPEL+ +PT++IH    AP S L    + L  NYP P+  +
Sbjct: 406 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGL 465

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 466 DEAKARLHEALSQMWQLEAAS 486


>gi|110004787|emb|CAK99121.1| putative deoxyribodipyrimidine photolyase protein [Spiroplasma
           citri]
          Length = 435

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 136/449 (30%), Positives = 212/449 (47%), Gaps = 73/449 (16%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           D RI DN  L A   N + K+  +FI T EQ + +   + +S   + +++   K L++K 
Sbjct: 9   DFRIEDNLGL-AQLANEEKKIYLLFIFTKEQIKANNYFSSRS---FQAMVHCLKQLTKKV 64

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQ--RVTKLFYNRQYEINEVRRDKLLEK-RLQHRVIC 133
            V  + +  N    I++L    L+Q  ++ K++ NR Y    + R K + +   ++  I 
Sbjct: 65  HV-NFLKSENEQTGIKFL----LEQGYKINKIYTNRDYTPFALNRSKAMRQLSKEYNFIY 119

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------------IQNLVQADLRSLPVP 180
           + FDD VLL P +I       Y V+TPF   L             +   +   L+ L + 
Sbjct: 120 REFDDYVLLEPWTIKTTQNGYYTVFTPFWNKLKEHFNDNHIITYKVNPFLPQHLKDLEIL 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                   +  N+P  F+   +    MF + +                 Y + RD+  ++
Sbjct: 180 QDITNVKSSDFNLPLEFE---KVKTAMFQLNQN----------------YQQTRDLVDLE 220

Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF--SWLNELIWREFYRHLM-- 295
            GT+++S  L  GV+S RQC+         L    K G F  ++  +L WR+FY  +   
Sbjct: 221 NGTAKISTALKFGVVSIRQCY---------LWSIEKFGTFDNAFARQLAWRDFYYQVTYN 271

Query: 296 -AFYPSVCMG-----KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
              +   C       K  I WT  +EW       Q W+ G TG+  IDA M++L   G +
Sbjct: 272 AQLHQQWCFSENWNKKITINWTNNLEW------FQKWQNGETGYDFIDAGMKELKETGLL 325

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RM+ ASFLVK+L +DW  GE+YF  QL+D D   N   WQW A TG D+ P+FRIF
Sbjct: 326 HNRARMVCASFLVKNLQIDWHKGEQYFAQQLIDYDPIINQCSWQWVAGTGFDAQPFFRIF 385

Query: 410 NPTIQGKRFDPQGTFIRHWL---PELNNV 435
           NP +Q K++DP  ++   +L   P +N +
Sbjct: 386 NPELQQKKYDPTSSYCNKFLKNRPTINKI 414


>gi|304571318|dbj|BAJ15777.1| cryptochrome1 [Cardamine nipponica]
 gi|304571320|dbj|BAJ15778.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  182 bits (463), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 148/501 (29%), Positives = 236/501 (47%), Gaps = 47/501 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 3   IVWFRRDLRVEDNPALAAAVRA--GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  +
Sbjct: 61  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 117

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V+
Sbjct: 118 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDVS 176

Query: 190 P--SNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              S+   F D   +  + +       G  NA   L  F    +  Y + R       TS
Sbjct: 177 KCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+   G +S R+ +              N+  EE V+L +K           +  RE
Sbjct: 237 FLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLK----------SIGLRE 286

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+
Sbjct: 287 YSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWL 345

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI 
Sbjct: 346 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 405

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPI--V 461
           NP  +G +FDP G ++R WLPEL+ +PT++IH     P S L    + L  NYP P+  +
Sbjct: 406 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNTPESVLQAAGIELGSNYPRPVLGL 465

Query: 462 DHKKA-CHHTLNQYYAAKKQS 481
           D  KA  H  L+Q +  +  S
Sbjct: 466 DEAKARLHEALSQMWQLEAAS 486


>gi|329850702|ref|ZP_08265547.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19]
 gi|328841017|gb|EGF90588.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19]
          Length = 280

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/268 (38%), Positives = 140/268 (52%), Gaps = 21/268 (7%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           +F  GE  A   LR+F    +  Y + RD P    TS LSP+L  G +SPR+    L ++
Sbjct: 23  IFKPGEAGARGALRRFLASGLADYEDGRDRPDKDLTSYLSPHLRFGEISPRRILTEL-DK 81

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
            V    +  + A  +  EL+WREF  +++   P +   + F        W       +AW
Sbjct: 82  VVRSTPRLVAPAEKFRKELVWREFNYNILDLQPELHT-RNFRDDFSTFPWQSSDKDFRAW 140

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
            +G TG+P++DA M+QL   G+MHNR+RM+ ASFLVK LL+DWR GE++F   LLD D A
Sbjct: 141 ARGETGYPLVDAGMKQLWQTGFMHNRVRMVCASFLVKHLLIDWRRGEQWFWDCLLDADPA 200

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SN G WQW A  G D+ PYFR+FNP  Q  +FDP   + R                    
Sbjct: 201 SNPGNWQWVAGCGADAAPYFRVFNPITQADKFDPDDIYRRK------------------- 241

Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            DK   ++ YP PIVDH  A    L+ Y
Sbjct: 242 FDKPRGTVPYPRPIVDHAFARERALDAY 269


>gi|255964973|gb|ACU44659.1| cryptochrome 1 [Medicago sativa]
          Length = 676

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 149/498 (29%), Positives = 231/498 (46%), Gaps = 56/498 (11%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           +++     +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++ 
Sbjct: 2   SSSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLK 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDK 121
            SL  +  SL   G      + +   DS+  L         T++F+N  Y+ ++ VR  +
Sbjct: 60  NSLAHLDSSLRNLGTPLVTKRST---DSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHR 116

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             E      +  +SF+  +L  P  + +   Q +  +  F +  +   +  D ++ P+P 
Sbjct: 117 AKEILTAQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLS--MPYDPQAPPLPP 174

Query: 182 IRLT-GPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQR 234
            R+  G V+  PS+   F D   +A + +       G  NA   L  F    +  Y + R
Sbjct: 175 KRIIPGDVSKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNR 234

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQC----------W----NRLKEEFVDLLIKPKSGAFS 280
                  TS LSP+L  G +S ++           W    N   EE V+L +K       
Sbjct: 235 RKADSATTSFLSPHLHFGEVSVKKVLHLVRIKQVFWANEGNEAGEESVNLFLK------- 287

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKP-----FIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
               +  RE+ R++   +P      P     F PW        +    +AW+QG TG+P+
Sbjct: 288 ---SIGLREYSRYISFNHPYSHERPPLGHLKFFPWV------VNEGYFKAWRQGRTGYPL 338

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ 
Sbjct: 339 VDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI 398

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND 451
           + T  D   + RI NP  +G + DP G ++R WLPEL  +PT++IH    AP S L    
Sbjct: 399 SGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAG 458

Query: 452 LSL--NYPLPIVDHKKAC 467
           + L  NYPLPIV+   A 
Sbjct: 459 IELGSNYPLPIVEIDAAT 476


>gi|219888079|gb|ACL54414.1| unknown [Zea mays]
          Length = 688

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 147/478 (30%), Positives = 227/478 (47%), Gaps = 32/478 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA      +V+  ++ +PE+   +        +I  SL  +  
Sbjct: 4   VVWFRRDLRVEDNPALAAAARAG-GEVVPAYVWSPEEEGPYYPGRVSRWWISQSLNHLDA 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
           SL + G      + S   D+   L         T +++N  Y+ I+ VR  +L E     
Sbjct: 63  SLRRLGAGKLVTRRSA--DAAVALLQLVRDTGATHVYFNHLYDPISLVRDRRLKEMLAAE 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            ++ +SF+  +L  P  +++   Q + ++ PF    +          LP   I  +G ++
Sbjct: 121 GIVVQSFNSDLLYEPWEVVDDEGQPFTMFDPFWNRCLSMPYDPPAPLLPPKRIN-SGDLS 179

Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             PS    F D   +  + +       G QNA   L  F    +  Y   R       TS
Sbjct: 180 MCPSEDLIFEDESERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSASTS 239

Query: 244 QLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHL 294
            LSP+L  G LS R+ ++  R+K+     L+    G  +       +L  +  RE+ R+L
Sbjct: 240 LLSPHLHFGELSVRKVFHLVRMKQ-----LVWSNEGNHAAEESCTLFLRSIGLREYSRYL 294

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +PS    +P +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R
Sbjct: 295 SFNHPS-SHERPLLAHLRFFPWVVDESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIR 353

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           ++ ASF VK L + WR G +YF   LLD DL S+  GWQ+   +  D     RI NP  +
Sbjct: 354 VVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDGRELDRIDNPQFE 413

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           G +FDP G ++R W+PEL  +PT++IH    AP S L    + L  NYPLPIV+   A
Sbjct: 414 GYKFDPHGEYVRRWIPELARLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAA 471


>gi|161138118|gb|ABX58030.1| cryptochrome 2 [Triticum aestivum]
          Length = 650

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 141/474 (29%), Positives = 231/474 (48%), Gaps = 30/474 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    D  V+ VFI  P +  +         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNPALAAAAR--DGAVLPVFIWCPAEEGRFYTGRCSRWWLKESLAHLAR 65

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127
           SL   G  +V    Q +     ++ +DS       T++ YN  Y+ I+ VR DK+  + L
Sbjct: 66  SLQALGCPLVLIRAQ-TTLAALLQCVDSIG----ATRVVYNHLYDPISLVRDDKIKNELL 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAI 182
              +  +SF+  +L  P  + +     +  +  + +  ++  +      A  R +PV  I
Sbjct: 121 GLGISMQSFNGDLLYEPWEVYDENGLAFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSGI 180

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIPA 238
                 +  N+        ++ + +       G +NA   L  F    +  Y + R   A
Sbjct: 181 ENICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVA 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIWREFYRHL 294
              TS LSPYL  G +S R+ +  ++ + +    + KSGA   +N     +  RE+ R+L
Sbjct: 241 GTTTSLLSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESVNLFLLSIGLREYSRYL 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R
Sbjct: 301 CFNFP-FTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK L + W  G +YF   LLD D+ S+  GWQ+ + +  D     R+ NP +Q
Sbjct: 360 VIVSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQ 419

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLD--KNDLSLNYPLPIVD 462
           G+++DP G ++R W+PEL  +P ++IH    AP S L+    +L  NYP+PIV+
Sbjct: 420 GQKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVE 473


>gi|261876447|dbj|BAI47549.1| cryptochrome1 [Glycine max]
 gi|261876449|dbj|BAI47550.1| cryptochrome1 [Glycine max]
          Length = 682

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 147/488 (30%), Positives = 228/488 (46%), Gaps = 44/488 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL A        V+AVFI  PE+  Q+        ++  SL  +  
Sbjct: 9   IVWFRRDLRIEDNPALTAGVRA--GAVVAVFIWAPEEEGQYYPGRVSRWWLKNSLAHLDS 66

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
           SL   G      + +   D++  L         T+LF+N  Y+ ++ VR  +  E     
Sbjct: 67  SLRNLGTPLITKRST---DTLSSLFEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQ 123

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +   + +  +  F +  +      +   LP P   + G  +
Sbjct: 124 GITVRSFNADLLYEPWDVNDAHGRPFTTFAAFWERCLSMPYDPESPLLP-PKRIIPGDAS 182

Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             PS+   F D   +A + +       G  NA   L  F    +  Y + R       TS
Sbjct: 183 RCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 242

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G LS ++ +              N+  EE V+L +K           +  RE
Sbjct: 243 LLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLK----------SIGLRE 292

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+
Sbjct: 293 YSRYISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWL 351

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI 
Sbjct: 352 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRID 411

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDH 463
           NP  +G +FDP G ++R WLPEL+ +PT++IH    AP S L    + L  NYPLPIV  
Sbjct: 412 NPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGI 471

Query: 464 KKACHHTL 471
             A +  L
Sbjct: 472 DAAKNRLL 479


>gi|261876455|dbj|BAI47553.1| cryptochrome1 [Glycine max]
 gi|261876457|dbj|BAI47554.1| cryptochrome1 [Glycine max]
          Length = 681

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 147/484 (30%), Positives = 224/484 (46%), Gaps = 44/484 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        VI+VFI  PE+  Q+        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVISVFIWAPEEEGQYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123
           L  +  SL   G      + +N   SI  L         T+LF+N  Y+ ++ VR  +  
Sbjct: 60  LAHLDSSLRNLGSPLITKRSTN---SISSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAK 116

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           E      +  +SF+  +L  P  + +   Q +  ++ F +  +          LP P   
Sbjct: 117 EVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLP-PKRI 175

Query: 184 LTG--PVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237
           + G  P  PS+   F D   +A + +       G  NA   L  F    +  Y + R   
Sbjct: 176 IPGDVPRCPSDTLVFEDELEKASNALLARAWSPGWSNADKALTAFVNGALIEYSKNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283
               TS LSP+L  G +S ++ +              N+  EE V+L +K          
Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLK---------- 285

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            +  RE+ R++   +P     +P +   +   W  +    +AW+QG TG+P++DA MR+L
Sbjct: 286 SIGLREYSRYISFNHP-YSHERPLLAHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMREL 344

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D  
Sbjct: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457
              RI NP  +G + DP G ++R WLPEL  +PT++IH    AP S L    + L  NYP
Sbjct: 405 ELDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464

Query: 458 LPIV 461
           LPIV
Sbjct: 465 LPIV 468


>gi|37725007|gb|AAO23970.1| cryptochrome 1 [Pisum sativum]
 gi|45935254|gb|AAS79662.1| cryptochrome 1 apoprotein [Pisum sativum]
 gi|45935256|gb|AAS79663.1| cryptochrome 1 apoprotein [Pisum sativum]
          Length = 682

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 146/490 (29%), Positives = 228/490 (46%), Gaps = 44/490 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++    +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++  S
Sbjct: 2   SSGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLKNS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123
           L Q+  SL   G      + +   DSI  L         T++F+N  Y+ ++ VR  +  
Sbjct: 60  LSQLDSSLRNLGTPLVTKRST---DSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAK 116

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           E      +  +S++  +L  P  + +   Q +  +  F +  +          LP P   
Sbjct: 117 EILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLP-PKRI 175

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           + G V+  PS+   F D   ++ + +    +  G  NA   L  F    +  Y   R   
Sbjct: 176 IPGDVSRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283
               TS LSP+L  G +S ++ +              N+  EE V+L +K          
Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLK---------- 285

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            +  RE+ R++   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L
Sbjct: 286 SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMREL 344

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D  
Sbjct: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457
            + RI NP  +G + DP G ++R WLPEL  +PT++IH    AP S L    + L  NYP
Sbjct: 405 EFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464

Query: 458 LPIVDHKKAC 467
           LPIV+   A 
Sbjct: 465 LPIVEIDAAT 474


>gi|302755656|ref|XP_002961252.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii]
 gi|300172191|gb|EFJ38791.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii]
          Length = 494

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 142/478 (29%), Positives = 226/478 (47%), Gaps = 30/478 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ DN AL AA  +    V+ +FI   E+  +         ++  SL+ 
Sbjct: 4   STTIVWFRRDLRVEDNPALAAA--SKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSLMH 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL++ G      +      S+  L       + T++FYN  Y+   + RD  ++  L
Sbjct: 62  LNSSLAKLGCPLLMQKSRG--SSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKHGL 119

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            Q+ +  ++F+  +L  P  + +     Y  +  F +  +    + D   LP    RL+ 
Sbjct: 120 SQYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLP--PKRLSP 177

Query: 187 PVTPS----NIPR--------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           P  P      +P         F       +   +  G  NA   L  F    +  Y + R
Sbjct: 178 PAEPGLGHLGLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKALDAFLAGPLADYGDNR 237

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE----FVDLLIKPKSGAFSWLNELIWREF 290
                  TS LSP+L  G LS R+ ++ ++ +      D     +  A  +L  L +RE+
Sbjct: 238 GKVDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREY 297

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R+L   +P     +  +       W  D    +AW+QG TG+P++DA MR+L   GW+H
Sbjct: 298 SRYLCFHFP-FTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLH 356

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R+  
Sbjct: 357 NRIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEI 416

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462
           P ++G+RFDP G ++R WLPEL+ +PT++IH    AP S L     +L  NYP P+V+
Sbjct: 417 PHVEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVE 474


>gi|257058615|ref|YP_003136503.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
 gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
          Length = 488

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/486 (28%), Positives = 242/486 (49%), Gaps = 49/486 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASL 65
           L+W RNDLR+ D++ ++ A     A++I  +      ++            +S F+  S+
Sbjct: 9   LIWYRNDLRLHDHQPMFQAVKKK-AQIIPFYCFDDRHFKTTSFGFPKTGNFRSQFLLQSI 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++K+L Q G      +   + + I  +   C +  +  ++++++    E++ +  LEK
Sbjct: 68  DNLRKNLQQLGSNLVIRR--GYPEKI--IPEICQELAIDAVYFHQEVTSEEIKVETALEK 123

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-IQNLVQADLRSLPVPAIR 183
            L Q  V    F  + L  P  +     ++ +++T FRK +  ++L+ +   + P P   
Sbjct: 124 ALTQMGVKLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINS---TFPTPKKL 180

Query: 184 LTGP-VTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFC--KEKVYYYVEQR 234
            + P +   NIP   +   +  +        F  GE   +  L ++   K ++  Y E R
Sbjct: 181 PSLPNLDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNRLKDYKETR 240

Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREFYR 292
           + +     +S+ SP+L++G LSPR  +  + +  ++   + K+ +  WL  EL+WR+++R
Sbjct: 241 NGMLGSDYSSKFSPWLALGCLSPRYIYEEVTKYELE---RVKNDSTYWLIFELLWRDYFR 297

Query: 293 HLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            + A      FY S   G   +PW E  +W +     Q W+ G TG+P++DA M +L   
Sbjct: 298 FICAKHGNKVFYSSGLQGFN-LPWKE--DWQR----FQLWQTGNTGYPLVDANMTELAAT 350

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+M NR R   ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   F
Sbjct: 351 GFMSNRGRQNVASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARG-F 409

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           R FN   Q K +DP+G ++RHWLPEL  +P   IH P             +L ++YP PI
Sbjct: 410 RYFNIPKQSKDYDPKGNYLRHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRPI 469

Query: 461 VDHKKA 466
           VD  K+
Sbjct: 470 VDFFKS 475


>gi|167563424|ref|ZP_02356340.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis EO147]
          Length = 254

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/258 (40%), Positives = 139/258 (53%), Gaps = 13/258 (5%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   RD P    TS+LSP++  G LS RQ W+   +         ++   ++  EL WRE
Sbjct: 1   YATGRDRPGAASTSRLSPFVRFGNLSVRQVWHAAVDAHAHGAAT-QADLDTFCRELGWRE 59

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F    +  +P +   +      + + W  D   L AW++G TG+P++DA MR+L   GWM
Sbjct: 60  FCYGQLYRFPDLAR-RNLRHNLDGMPWRDDPAALAAWRRGATGYPLVDAGMRELWATGWM 118

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RM+ ASFLVK LL+DWR G+ +F   L+D D ASN   WQW A  G D+ PYFRIF
Sbjct: 119 HNRARMVCASFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIF 178

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQ-YIHAPHSWLDKND--------LSLNYPLPI 460
           NP  QGK+FDP G ++R W+PEL  +P    IH P  W             L   YPLPI
Sbjct: 179 NPIAQGKKFDPDGAYVRRWVPELAGLPANAAIHEP--WAAPAARLAAAGVRLGDTYPLPI 236

Query: 461 VDHKKACHHTLNQYYAAK 478
           V H  A    L+ +   +
Sbjct: 237 VAHDAARKRALDAWVTVR 254


>gi|124361190|gb|ABN09162.1| Deoxyribodipyrimidine photolyase, class 1 [Medicago truncatula]
          Length = 679

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 145/492 (29%), Positives = 227/492 (46%), Gaps = 44/492 (8%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           +++     +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++ 
Sbjct: 2   SSSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLK 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDK 121
            SL  +  SL   G      + +   DS+  L         T++F+N  Y+ ++ VR  +
Sbjct: 60  NSLAHLDSSLRNLGTPLVTKRST---DSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHR 116

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             E      +  +SF+  +L  P  + +   Q +  +  F +  +          LP P 
Sbjct: 117 AKEILTAQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPLLP-PK 175

Query: 182 IRLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRD 235
             + G V+  PS+   F D   +A + +       G  NA   L  F    +  Y + R 
Sbjct: 176 RIIPGDVSKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRR 235

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSW 281
                 TS LSP+L  G +S ++ +              N   EE V+L +K        
Sbjct: 236 KADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNEAGEESVNLFLK-------- 287

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
              +  RE+ R++   +P     +P +   +   W  +    +AW+QG TG+P++DA MR
Sbjct: 288 --SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMR 344

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D
Sbjct: 345 ELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPD 404

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--N 455
              + RI NP  +G + DP G ++R WLPEL  +PT++IH    AP S L    + L  N
Sbjct: 405 GREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSN 464

Query: 456 YPLPIVDHKKAC 467
           YPLPIV+   A 
Sbjct: 465 YPLPIVEIDAAT 476


>gi|302772136|ref|XP_002969486.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii]
 gi|300162962|gb|EFJ29574.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii]
          Length = 494

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 226/478 (47%), Gaps = 30/478 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ DN AL AA  +    V+ +FI   E+  +         ++  SL+ 
Sbjct: 4   STTIVWFRRDLRVEDNPALAAA--SKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSLMH 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL++ G      +      S+  L       + T++FYN  Y+   + RD  ++  L
Sbjct: 62  LNSSLTKLGCPLLMQKSRG--SSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKHGL 119

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            Q+ +  ++F+  +L  P  + +     Y  +  F +  +    + D   LP    RL+ 
Sbjct: 120 SQYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLP--PKRLSP 177

Query: 187 PVTPS----NIPR--------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           P  P      +P         F       +   +  G  NA   L  F    +  Y + R
Sbjct: 178 PAEPGLGHLGLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKSLDAFLAGPLADYGDNR 237

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE----FVDLLIKPKSGAFSWLNELIWREF 290
                  TS LSP+L  G LS R+ ++ ++ +      D     +  A  +L  L +RE+
Sbjct: 238 GKVDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREY 297

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R+L   +P     +  +       W  D    +AW+QG TG+P++DA MR+L   GW+H
Sbjct: 298 SRYLCFHFP-FTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLH 356

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R+  
Sbjct: 357 NRIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEI 416

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462
           P I+G+RFDP G ++R WLPEL+ +PT++IH    AP S L     +L  NYP P+V+
Sbjct: 417 PHIEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVE 474


>gi|326493172|dbj|BAJ85047.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326496489|dbj|BAJ94706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 656

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 140/473 (29%), Positives = 227/473 (47%), Gaps = 28/473 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    D  V+ VFI  P +  +         ++  SL  + K
Sbjct: 8   VVWFRKDLRIDDNPALAAAAR--DGAVLPVFIWCPAEEGRFYPGRCSRWWLKESLAHLAK 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYE-INEVRRDKLLEKRLQ 128
           SL   G      +     D++      C+   R T++ YN  Y+ I+ VR DK+  + L 
Sbjct: 66  SLEALGCPLVLIRAQTTLDAL----LQCVHSIRATRVVYNHLYDPISLVRDDKIKNELLG 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAIR 183
             +  +SF+  +L  P  I +     +  +  + +  ++  ++     A  R +PV  I 
Sbjct: 122 LGISMQSFNGDLLYEPWEIYDENGLAFTTFNMYWEKCMELPIEISPSLAPWRLVPVSGIE 181

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  N+        ++ + +       G +NA   L  F    +  Y +     A 
Sbjct: 182 NLCTSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVCHGLLDYSKDGMKVAG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIWREFYRHLM 295
             TS LSPYL  G +S R+ +  ++ + +    +  S A   +N     +  RE+ R+L 
Sbjct: 242 TTTSLLSPYLHYGEVSVRKIYQLVRMQQIKCGNEGNSEAGESVNLFLRSIGLREYSRYLC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+
Sbjct: 302 FNFP-FTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W  G +YF   LLD D+ S+  GWQ+ +    D     R+ NP +QG
Sbjct: 361 IVSSFAVKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLD--KNDLSLNYPLPIVD 462
           +++DP G ++R W+PEL  +P ++IH    AP S L+    +L  NYP+PIV+
Sbjct: 421 QKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVE 473


>gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142]
 gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142]
          Length = 491

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 146/506 (28%), Positives = 245/506 (48%), Gaps = 63/506 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--QHGISAR---QSHFIYASL 65
           L+W RNDLRI D++ +Y A     A +I ++     Q++   +G       +  F+  S+
Sbjct: 12  LIWYRNDLRIHDHEPMYQAIKEG-ALIIPLYCFDIRQFKTTSYGFPKTGNFRGQFLLESV 70

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             +++SL   G   IV + +      + I+ L+       +  ++++ +    E   +K 
Sbjct: 71  ANLRQSLQDLGSNLIVRKGYPEKIIPELIKELE-------IDAVYFHEEVTSEETTVEKE 123

Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRS 176
           +++ L+  +V  + F  S L     +     Q+ +V+T FRK +     +   +   ++ 
Sbjct: 124 VKQALKPLKVKVQGFWGSTLYHWDDLPFEVNQLPEVFTSFRKKVEKSSTVNPTLITPIKL 183

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEK--VY 228
           LP P I L        IP   +   +  D        F  GE   +  L+++  E+  + 
Sbjct: 184 LPFPNIEL------GKIPTLEELGLEKPDYHSRGMLNFKGGETGGIKRLKEYFWERNCLK 237

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y E R+ +     +S+ SP+L+ G LSPR  +  + +++ D  +K  S  +  + EL+W
Sbjct: 238 EYKETRNGMLGADYSSKFSPWLAQGCLSPRYIYEEV-QKYEDARVKNNS-TYWLIFELLW 295

Query: 288 REFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           R+++R + A      FY S   G   IPW E      D    + W++  TG+P++DA MR
Sbjct: 296 RDYFRFICAKHGNKIFYESGLQGLD-IPWKE------DKERFKLWQESKTGYPLVDANMR 348

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           ++   G+M NR R   ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND
Sbjct: 349 EIAATGFMSNRGRQNVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGND 408

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LS 453
           +   FR FN   Q K +DP+G ++RHWLPEL  +P   IH P  W    D        + 
Sbjct: 409 ARG-FRYFNIPKQSKDYDPKGDYLRHWLPELKMIPGDKIHEP--WKLSQDEQKRYNVRIG 465

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++YP P+VD  K+       Y +A K
Sbjct: 466 VDYPRPVVDFFKSVKANEKVYNSATK 491


>gi|323352252|gb|EGA84789.1| Phr1p [Saccharomyces cerevisiae VL3]
          Length = 406

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 194/395 (49%), Gaps = 37/395 (9%)

Query: 13  WLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           W RNDLR+ DN  LY +          N+ AK+ AV++   + WR H  S  +  FI  +
Sbjct: 3   WFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLMFIMGA 62

Query: 65  LLQVQKSLSQKGI---VFQYHQ----CSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEI 114
           L  +Q+SL++  I   ++++H      SN  + +E+    C+       T +  N +Y+ 
Sbjct: 63  LKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITANIEYQT 122

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K  +  +     
Sbjct: 123 DELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYVNNYKK 182

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-------------MFPIGEQNALHILRK 221
            +  +  + +  P+  +    F   PFQ   P             +  + E+ AL  L+ 
Sbjct: 183 STSEICHLHIIEPLKYNET--FELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALSRLKD 240

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLIKPKSG 277
           F   K   Y  ++D+  + GTS LS Y++ G +S R    Q +     + +   +K  S 
Sbjct: 241 FLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALKDNSS 300

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
             +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  G TG PI+D
Sbjct: 301 TQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIPIVD 360

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
           A MR+L   G+++NR RMITASFL K+LL+DWR G
Sbjct: 361 AIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWG 395


>gi|89199716|gb|ABD63261.1| cryptochrome 1 [Glycine max]
 gi|261876445|dbj|BAI47548.1| cryptochrome1 [Glycine max]
          Length = 681

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 144/478 (30%), Positives = 224/478 (46%), Gaps = 44/478 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL A        V+AVF+  PE+  Q+        ++  SL  +  
Sbjct: 8   IVWFRRDLRIEDNPALTAGVRA--GAVVAVFVWAPEEEGQYYPGRVSRWWLKNSLAHLHS 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
           SL   G      + +   D++  L         T+LF+N  Y+ ++ VR  +  E     
Sbjct: 66  SLRNLGTPLITKRST---DTLSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQ 122

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +   + +  +  F +  +      +   LP P   + G  +
Sbjct: 123 GITVRSFNADLLYEPWEVNDAHGRPFTTFAAFWERCLSMPYDPESPLLP-PKRIIPGDAS 181

Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             PS+   F D   +A + +       G  NA   L  F    +  Y + R       TS
Sbjct: 182 RCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 241

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSP+L  G LS ++ +              N+  EE V+L +K           +  RE
Sbjct: 242 LLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLK----------SIGLRE 291

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+
Sbjct: 292 YSRYISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWL 350

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI 
Sbjct: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRID 410

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461
           NP  +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV
Sbjct: 411 NPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIV 468


>gi|310816072|ref|YP_003964036.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25]
 gi|308754807|gb|ADO42736.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25]
          Length = 478

 Score =  180 bits (456), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 141/480 (29%), Positives = 213/480 (44%), Gaps = 63/480 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA-RQSHFIYASLLQVQ 69
           L WL  D R  DN AL AAC  +D  ++AVF        Q   S  R    + A    ++
Sbjct: 6   LFWLSRDFRFADNPALAAAC--TDGPLLAVFCVDDLLMSQGAASRWRLEQALRAFDAALR 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR--RDKLLEKRL 127
           K    +G++    +      ++       +Q    +  +   +    +R  +D+L     
Sbjct: 64  KRTGGRGVLVLRGEPDRILPAL-------VQNTGAQRIHQSDWPTAGMRAVQDRLRAALA 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                 +     +L  P  + + A   Y+VYTPF +AL Q+      R  P    R+T  
Sbjct: 117 PLGAGLELHGGHLLAHPAMLRSGAGTPYRVYTPFARALRQHGADRPGRDAPA---RIT-- 171

Query: 188 VTPSNIPRFFDYPFQAIDPM-----------------FPIGEQNALHILRKFCKEKVYYY 230
                 P   D+   AI+ +                  P G Q A   L  F  ++   Y
Sbjct: 172 ------PCADDHQGLAIETLDLAPDMHRGRALLAKFALPAGAQQAEARLDTFL-DQAAVY 224

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWRE 289
              RD P    TS LS +L++G +SPR+ W         +  + P  G   +L+E+IWRE
Sbjct: 225 PAGRDHPDQPATSNLSEHLALGEISPRRIWAIASLRAAAEPALAP--GITKFLSEVIWRE 282

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEK---IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           F  HL+   P +    P  PW ++     W + +  L  W+Q  TG  ++DA +R++   
Sbjct: 283 FSWHLLIANPDL----PTQPWRQEWSEFPWQQRTSALSRWEQAATGISLVDAGLREMRVT 338

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G MHNR+RM+ AS+L K ++ DWR+G ++F   L D D A+N   WQW A  G D+ PYF
Sbjct: 339 GRMHNRVRMVVASWLTKHMMTDWRLGLQHFADSLTDWDPAANAMNWQWVAGCGPDASPYF 398

Query: 407 RIFNPTIQGKRFDPQGTFIRHWL--------PEL----NNVPTQYIHAPHSWLDKNDLSL 454
           RIFNP  Q + FD +G + R WL        PE     +++PT +  A H   D +D  L
Sbjct: 399 RIFNPVKQAEEFDKKGIYRRKWLAGFDGSAAPEAIAYHDSLPTDWHVARHWREDASDERL 458


>gi|225024820|ref|ZP_03714012.1| hypothetical protein EIKCOROL_01707 [Eikenella corrodens ATCC
           23834]
 gi|224942423|gb|EEG23632.1| hypothetical protein EIKCOROL_01707 [Eikenella corrodens ATCC
           23834]
          Length = 438

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 142/462 (30%), Positives = 212/462 (45%), Gaps = 40/462 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-ISARQSHFIYASLLQVQ 69
           LVW R DLR  D  AL AA   S   ++ +++     W   G ++AR+ +FI+ SL  +Q
Sbjct: 7   LVWFRQDLRTDDQPALQAAA-RSGRPLLGLYV-----WPNEGMLTARRRYFIWQSLRDLQ 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L++ GI     + +     +E   ++C   R  ++            R  +LEK+   
Sbjct: 61  ARLAECGIPLHVREGNPVQAVVE-TAAHC---RAAEVVCASDGAGQGALR-AVLEKQ--- 112

Query: 130 RVICK--SFDDSVLLPPGSILNHALQMYKVYTPFR----KALIQNLVQADLRSLPVPAIR 183
              C+  S  D +L PP   +         +  F+     A ++        + P P + 
Sbjct: 113 --GCRLHSVADGLLQPPFQFIRAPYFNEPAFAAFQVAWQAACVEQYAAWQASAWPPPDLA 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                 P N+               P GE  A   L +F     YY V  R +PA  G+S
Sbjct: 171 AQQQRLPENLKTAGLPVVPRAVLTIPGGETAARRQLAEFLPRLPYYPV-LRSLPAQHGSS 229

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSP+L  G LS R+ W                 A +W   L  REF+RH    YP V  
Sbjct: 230 QLSPHLVFGTLSVRRAWAAASN---------TPDAAAWQEALARREFWRHYFRQYPDVL- 279

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +  +P   +     +  LL AW+QG TG+P+ DAAMR L   GW+ + LR   A+F  +
Sbjct: 280 -RQDLP-EHRAAGQANQTLLAAWQQGITGYPLADAAMRLLRDTGWLPHSLRRFCAAFFCR 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L   W+ G  +F  QLLD + A+N+G WQ AA  G   V   + FNP +  ++ DP G 
Sbjct: 338 VLGGRWQDGAGWFARQLLDFEPAANSGNWQLAAGLGGKQVER-QPFNPVVWSQKLDPDGQ 396

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHK 464
           FIR  LP+L ++ ++ IHAP  WL   +++ N YP P+VD++
Sbjct: 397 FIRRHLPQLAHLDSRRIHAP--WLAAAEVNTNGYPAPVVDYR 436


>gi|259019315|gb|ACV89993.1| CRY1 [Fragaria vesca]
          Length = 673

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 146/493 (29%), Positives = 230/493 (46%), Gaps = 46/493 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   +  SV  VW R DLR+ DN AL A        V+A+FI  PE+   +        +
Sbjct: 1   MSGGSGCSV--VWFRRDLRVEDNPALLAGVRA--GGVVALFIWAPEEEGPYYPGRVSRWW 56

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRR 119
           +  SL  +  SL   G      + +   DS+  L   CL    T+LF+N  Y+ I+ VR 
Sbjct: 57  LKHSLAHLDSSLRSLGTPLITKKST---DSVSSLLEVCLATGATQLFFNHLYDPISLVRD 113

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            +  E    + +  +SF+  +L  P  + +   + +  +  F +  +      +   LP 
Sbjct: 114 HRAKEVLSANGITVRSFNADLLYEPWDVNDVHGRPFTTFDAFWERCLSMPFDPEAPLLP- 172

Query: 180 PAIRLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQ 233
           P   ++G  +  P +   F D   +  + +       G  +A   +  F    +  Y   
Sbjct: 173 PKRIISGDASRCPPDTLVFEDESEKGSNALLARAWSPGWSSADKAVTTFINGPLIEYSTN 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAF 279
           R       TS LSP+L  G +S R+ +              N+  EE V+L +K      
Sbjct: 233 RRKADSNTTSLLSPHLHFGEVSVRKVFHLIRIKQLLWANEGNKAGEESVNLFLK------ 286

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
                +  RE+ R++   +P     +P +   +   W  + +  +AW+QG TG+P++DA 
Sbjct: 287 ----SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWVINQNYFKAWRQGRTGYPLVDAG 341

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T 
Sbjct: 342 MRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTI 401

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL- 454
            D   + RI NP  +G + DP G ++R WLPEL+ +PT +IH    AP S L    + L 
Sbjct: 402 PDGREFDRIDNPQFEGYKCDPHGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELG 461

Query: 455 -NYPLPIVDHKKA 466
            NYPLPIV  + A
Sbjct: 462 SNYPLPIVGIEAA 474


>gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421]
 gi|81834455|sp|Q7NMD1|CRYD_GLOVI RecName: Full=Cryptochrome DASH
 gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421]
          Length = 500

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 235/483 (48%), Gaps = 51/483 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65
           LVW RNDLR+ D++ L +A H  +A+V+A++   P Q+ +      ++      F+  S+
Sbjct: 7   LVWYRNDLRVHDHEPLTSALHK-NARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLESV 65

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             +++SL Q G   +V + H         E + +   +  +  + Y+ +    E+  ++ 
Sbjct: 66  ADLRRSLRQLGSDLLVRRGHPE-------EVIPALVSELEIAAVHYHGEVTSEELVVERD 118

Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L+  L    V  +SF  + L+ P  +      + +++T FRK  ++     +        
Sbjct: 119 LQAALAPLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQ-VERSAAINPPLPAPAK 177

Query: 182 IRLTGPVTPSNIPRFFDYPFQA--IDP----MFPIGEQNALHILRKFCKEKVY---YYVE 232
           +     V P  IP+  D   ++   D      F  GE + L  L ++  +K     Y   
Sbjct: 178 LPPLPAVDPGEIPQLADLGLESPVTDERAVLQFKGGETSGLARLEEYFWQKSLLKSYKQT 237

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREFY 291
           +  +     +S+ S +L++G LS R    +++      +   K+ +  WL  EL+WR+++
Sbjct: 238 RNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRI---KNDSTYWLIFELLWRDYF 294

Query: 292 RHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           R + A      FY +   G   IPW E  +W +     + W+ G TGFP++DA MR+L  
Sbjct: 295 RFIAAKHGDRLFYTAGLRGLD-IPWKE--DWER----FELWRTGQTGFPLVDANMRELAA 347

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R   ASFL K+L + W +G E+F S+L+D D+ASN G W + A  GND+   
Sbjct: 348 TGFMSNRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGVGNDARG- 406

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459
           FR FN   Q + +DP G +++HWLPEL  +P   +H P   L          L ++YP P
Sbjct: 407 FRFFNILKQARDYDPDGAYVKHWLPELAGLPPARVHEPWKLLPVEQKRFGVRLGVDYPQP 466

Query: 460 IVD 462
           +VD
Sbjct: 467 VVD 469


>gi|161779368|gb|ABX79355.1| cryptochrome 1 [Vitis vinifera]
          Length = 681

 Score =  179 bits (454), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 147/485 (30%), Positives = 219/485 (45%), Gaps = 44/485 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        VI VFI  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123
           L  +  SL   G      + +   D I  L         T LF+N  Y+ ++ VR  +  
Sbjct: 60  LAHLDSSLRSLGTPLITKRST---DCISSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           E      +   SF+  +L  P  + +     +  ++ F    +      +   LP   I 
Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRIN 176

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237
             G V+  PS+   F D   +  + +       G  NA   L  F    +  Y +     
Sbjct: 177 -PGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283
               TS LSP+L  G +S R+ +              N+  EE V+L +K          
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLK---------- 285

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            +  RE+ R+L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L
Sbjct: 286 SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMREL 344

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMH+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D  
Sbjct: 345 WATGWMHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457
            + RI NP  +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYP
Sbjct: 405 EFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464

Query: 458 LPIVD 462
           LPIV+
Sbjct: 465 LPIVE 469


>gi|261876451|dbj|BAI47551.1| cryptochrome1 [Glycine max]
 gi|261876453|dbj|BAI47552.1| cryptochrome1 [Glycine max]
          Length = 681

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 146/484 (30%), Positives = 223/484 (46%), Gaps = 44/484 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVCVFIWAPEEEGQYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123
           L  +   L   G      + +N   SI  L         T+LF+N  Y+ ++ VR  K  
Sbjct: 60  LAHLDSYLRNLGSPLITKRSTN---SISSLLEVVKSTGATQLFFNHLYDPLSLVRDHKAK 116

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           E      +  +SF+  +L  P  + +   Q +  ++ F +  +          LP P   
Sbjct: 117 EVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLP-PKRI 175

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237
           + G V+  PS+   F D   +A + +       G  NA   L  F    +  Y + R   
Sbjct: 176 IPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALAAFVNGALIEYSKNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283
               TS LSP+L  G +S ++ +              N+  EE V+L +K          
Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLK---------- 285

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            +  RE+ R++   +P     +P +   +   W  +    +AW+QG TG+P++DA MR+L
Sbjct: 286 SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMREL 344

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D  
Sbjct: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457
            + RI NP   G + DP G ++R WLPEL  +PT++IH    AP S L    + L  NYP
Sbjct: 405 EFDRIDNPQFVGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464

Query: 458 LPIV 461
           LPIV
Sbjct: 465 LPIV 468


>gi|302141959|emb|CBI19162.3| unnamed protein product [Vitis vinifera]
          Length = 691

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 219/485 (45%), Gaps = 44/485 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        VI VFI  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123
           L  +  SL   G      + +   D +  L         T LF+N  Y+ ++ VR  +  
Sbjct: 60  LAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           E      +   SF+  +L  P  + +     +  ++ F    +      +   LP   I 
Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRIN 176

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237
             G V+  PS+   F D   +  + +       G  NA   L  F    +  Y +     
Sbjct: 177 -PGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283
               TS LSP+L  G +S R+ +              N+  EE V+L +K          
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLK---------- 285

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            +  RE+ R+L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L
Sbjct: 286 SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMREL 344

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMH+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D  
Sbjct: 345 WATGWMHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457
            + RI NP  +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYP
Sbjct: 405 EFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464

Query: 458 LPIVD 462
           LPIV+
Sbjct: 465 LPIVE 469


>gi|161898816|gb|ABX80391.1| cryptochrome 1 [Vitis riparia]
          Length = 681

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 219/485 (45%), Gaps = 44/485 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        VI VFI  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123
           L  +  SL   G      + +   D +  L         T LF+N  Y+ ++ VR  +  
Sbjct: 60  LAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           E      +   SF+  +L  P  + +     +  ++ F    +      +   LP   I 
Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRIN 176

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237
             G V+  PS+   F D   +  + +       G  NA   L  F    +  Y +     
Sbjct: 177 -PGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283
               TS LSP+L  G +S R+ +              N+  EE V+L +K          
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLK---------- 285

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            +  RE+ R+L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L
Sbjct: 286 SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMREL 344

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMH+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D  
Sbjct: 345 WATGWMHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457
            + RI NP  +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYP
Sbjct: 405 EFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464

Query: 458 LPIVD 462
           LPIV+
Sbjct: 465 LPIVE 469


>gi|302814412|ref|XP_002988890.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii]
 gi|300143461|gb|EFJ10152.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii]
          Length = 489

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/476 (29%), Positives = 227/476 (47%), Gaps = 29/476 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R DLR+ DN AL AA     + V+ VF+  PE+  Q         ++  SL+Q+  
Sbjct: 5   LVWFRRDLRLDDNPALAAAVARKGSIVVPVFVWCPEEEGQFQPGRVSRWWLKQSLIQLSS 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL + G      + +   D+   L         +++FYN  Y+   + RD  +++ L  H
Sbjct: 65  SLERLGAPLLVRRTAGTLDA---LLQIAHDTGASQVFYNHLYDPVSLIRDHRVKQGLADH 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLTGPV 188
            +  K+F   +L  P  I +   Q++  +  F  K+L     +A L   P   + L G +
Sbjct: 122 GISVKTFRGDLLYEPWEIYDDQGQVFTTFQAFWSKSLSMRDPEAPLLP-PRQLLSLPGYL 180

Query: 189 TPS------NIPRFFDYPFQAI-----DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             S       +    +    A+      P +  G++     L       + Y + ++ I 
Sbjct: 181 CQSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFL---SGPILQYSIRRKQID 237

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           ++  TSQLSP+L  G +S R+ +  ++ ++F             +L  L  RE+ R+L  
Sbjct: 238 SVT-TSQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDVESMNMFLRALGLREYSRYLSF 296

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     +  +   +   W  D    ++W+QG TG+P++DA MRQL   GW+H ++R++
Sbjct: 297 NFP-FTHKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATGWLHCKIRVV 355

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SFLVK L V W  G +YF   LLD D+ ++  GWQ+ +    D     R  NP ++G 
Sbjct: 356 VSSFLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRWENPQVKGY 415

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           + DP+G ++R WLPEL+ VP  +IH    AP + L    + L  NYP PIV+   A
Sbjct: 416 KLDPKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVEVAAA 471


>gi|225459298|ref|XP_002285792.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 681

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 219/485 (45%), Gaps = 44/485 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        VI VFI  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123
           L  +  SL   G      + +   D +  L         T LF+N  Y+ ++ VR  +  
Sbjct: 60  LAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           E      +   SF+  +L  P  + +     +  ++ F    +      +   LP   I 
Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRIN 176

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237
             G V+  PS+   F D   +  + +       G  NA   L  F    +  Y +     
Sbjct: 177 -PGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283
               TS LSP+L  G +S R+ +              N+  EE V+L +K          
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLK---------- 285

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            +  RE+ R+L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L
Sbjct: 286 SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMREL 344

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMH+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D  
Sbjct: 345 WATGWMHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457
            + RI NP  +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYP
Sbjct: 405 EFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464

Query: 458 LPIVD 462
           LPIV+
Sbjct: 465 LPIVE 469


>gi|213158208|ref|YP_002320259.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057]
 gi|213057368|gb|ACJ42270.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057]
          Length = 136

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 99/127 (77%), Gaps = 2/127 (1%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQL   GWMHNR+RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG
Sbjct: 1   MRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTG 60

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
            D+VPYFRIFNP  Q K+FDP+G +IR W+ EL ++  + IH P+S   K+DL LNY  P
Sbjct: 61  TDAVPYFRIFNPIAQSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKP 118

Query: 460 IVDHKKA 466
           IVD K+ 
Sbjct: 119 IVDLKET 125


>gi|218437350|ref|YP_002375679.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
 gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
          Length = 488

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 142/489 (29%), Positives = 239/489 (48%), Gaps = 33/489 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           L+W RNDLR+ D++AL  A     A +I  +     Q+R            ++ F+  S+
Sbjct: 7   LIWFRNDLRLHDHEALNEALQEK-ADIIPFYCFDERQFRTTSYGFPKTGKFRAQFLLESV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL + G      Q     + I  +        +T L+Y+ +    E+  +K L+K
Sbjct: 66  ADLRQSLQKLGSNLVIRQ--GLPELI--IPQIAQPLNITALYYHEEVTAEELTVEKRLKK 121

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    +  +SF  + L  P ++     Q+ +++T FRK + +    A +  LP P    
Sbjct: 122 ALAKCNIKVESFWGTTLYHPDNLPFEIYQLPELFTNFRKQVERKSTVAPV--LPAPKSLP 179

Query: 185 TGP-VTPSNIPRFFDYPFQ--AIDP----MFPIGEQNALHILRKFCKEK--VYYYVEQR- 234
             P +   N+P   +   +    +P     F  GE      L+ +  +K  +  Y E R 
Sbjct: 180 PLPDLDIGNLPSLSELGLEPAVFEPRGVLKFQGGEIAGRERLQDYIWQKNCLKNYKETRN 239

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           ++     +S+ SP+L+ G LSPR  +  + +++    +K  S  +  + EL+WR+F+R +
Sbjct: 240 EMLGADYSSKFSPWLAHGCLSPRYIYEEV-QKYEHQRVKNDS-TYWLIFELLWRDFFRFI 297

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            A + +       +   + + W +D    + W++G TG+P++DA MR+L T G+M NR R
Sbjct: 298 CAKHGNKIFFSQGLQGID-LPWKEDWQRFKLWQEGKTGYPLVDANMRELATTGFMSNRGR 356

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
              ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR FN   Q
Sbjct: 357 QNVASFLTKNLGINWLMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQ 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACH 468
            K +DP+G ++R+WLPEL  VP   IH P     +        L ++YP P+VD  K+  
Sbjct: 416 SKDYDPKGDYLRYWLPELALVPGDKIHEPWKLSQEEQKRYRVRLGVDYPHPVVDFFKSVK 475

Query: 469 HTLNQYYAA 477
                Y+ A
Sbjct: 476 GNEALYHRA 484


>gi|45935258|gb|AAS79664.1| mutant cryptochrome 1-1 protein [Pisum sativum]
          Length = 682

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 145/490 (29%), Positives = 226/490 (46%), Gaps = 44/490 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++    +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++  S
Sbjct: 2   SSGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVGVFIWAPEEEGQYYPGRVSRWWLKNS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123
           L Q+  SL   G      + +   DSI  L         T++F+N  Y+ ++ VR  +  
Sbjct: 60  LSQLDSSLRNLGTPLVTKRST---DSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAK 116

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           E      +  +S++  +L  P  + +   Q +  +  F +  +          LP P   
Sbjct: 117 EILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLP-PKRI 175

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIP 237
           + G V+  PS+   F D   ++ + +       G  NA   L  F    +  Y   R   
Sbjct: 176 IPGDVSRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLN 283
               TS LSP+L    +S ++ +              N+  EE V+L +K          
Sbjct: 236 DSATTSFLSPHLHFEEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLK---------- 285

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            +  RE+ R++   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L
Sbjct: 286 SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMREL 344

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D  
Sbjct: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGR 404

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYP 457
            + RI NP  +G + DP G ++R WLPEL  +PT++IH    AP S L    + L  NYP
Sbjct: 405 EFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464

Query: 458 LPIVDHKKAC 467
           LPIV+   A 
Sbjct: 465 LPIVEIDAAT 474


>gi|124006560|ref|ZP_01691393.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
 gi|123987973|gb|EAY27653.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
          Length = 483

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/480 (28%), Positives = 228/480 (47%), Gaps = 34/480 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYA 63
           V +VW RNDLR+ DN  L  A  ++D  ++ V+   P Q+    +      A ++ F+  
Sbjct: 14  VKIVWFRNDLRVHDNDVLAKAASDADY-LLPVYCFDPRQYETTSLGFAKTGAHRAQFLIE 72

Query: 64  SLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           +L  ++ +L  KG  +V +  +        E +       +   ++ +++    E    K
Sbjct: 73  TLANLRANLEAKGSGLVIRIGKPE------EVIADLAKATQAKAVYASQEIGTEEDATVK 126

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            LEKRL +++V  +      L+ P  +      +  V+T FRK + Q L   +  +LP  
Sbjct: 127 QLEKRLWKNQVFLELLWTGNLIHPADLPFPLNSLSNVFTDFRKEIEQGLKVREAVTLPDT 186

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEK--VYYYVE 232
              L   V   ++P+  D       P       F  GE   L  +  +  ++  + +Y +
Sbjct: 187 LPLLPPGVEAGSLPKLTDLGLTHTTPDTRAVLHFKGGETAGLQRIEDYIWQRSLLQHYKD 246

Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ +     +++ SP+L+ G +S R  ++ +K+ +   ++K KS  +  + EL+WRE++
Sbjct: 247 TRNGLLGADYSTKFSPWLANGAISARTVYHEIKK-YEQQVVKNKS-TYHLVFELLWREYF 304

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           R +   Y      K  I    ++E + +     + WK G TG P IDA MR+LN  G+M 
Sbjct: 305 RLVARKYGHRIFVKGGIKAKGEVEMSSNRKRTFKRWKNGETGIPFIDANMRELNATGFMS 364

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   AS+L KDL ++W  G  YF SQL+D D++SN   W + A  GND     R F+
Sbjct: 365 NRGRQNVASYLTKDLKINWVHGAMYFESQLIDYDVSSNWCNWNYVAGVGNDPRKD-RYFD 423

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
              Q  R+D +G +++HWLPEL ++P   +H PH             L  +YP PI   K
Sbjct: 424 ILSQANRYDNKGAYVKHWLPELASIPENKVHEPHQLKATEQQAYEMILGQDYPKPIPGKK 483


>gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
 gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
          Length = 515

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 145/504 (28%), Positives = 250/504 (49%), Gaps = 63/504 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHFIYASL 65
           L+W RNDLR+ D++ L+ A   + A++I V+   P Q+ +           ++ F+  S+
Sbjct: 29  LIWYRNDLRVHDHEPLHLAVK-AQAEIIPVYCFDPRQFGKTSFGFPKTGVFRAQFLLESV 87

Query: 66  LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
             ++ SL + G  ++ +Y    +F +++  +     Q  + +++Y R+    E+  +  L
Sbjct: 88  TDLRNSLRKLGSDLIVRY----DFPETV--IPELVKQLGIDEVYYYREVTSEELAVETTL 141

Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADL---RSLP 178
           EK L    V  KS+  + L     +     ++ +V+T FRK + +N  + A     + LP
Sbjct: 142 EKALNPLDVSLKSYWGATLYDLDDLPFSINRIPEVFTQFRKQVEKNGTIYASFPTPQRLP 201

Query: 179 V---------PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--V 227
           +         P ++  G  TP      FD   Q     F  GE   +  L  +  E+  +
Sbjct: 202 ILPQIEVGELPTLQKLGLETPQ-----FD---QRSVLKFQGGETAGISRLTDYIWEQDCL 253

Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             Y + R+ +     +S+ SP+L++G LSPR  ++ + +++ +  +K  S  +  + EL+
Sbjct: 254 KDYKQTRNGMLGANYSSKFSPWLALGCLSPRFIYDHV-QDYEEQRVKNDS-TYWLVFELL 311

Query: 287 WREFYR-----HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           WR+++R     H    +    +    IPW E  +W +     + W+ G TGFP++DA MR
Sbjct: 312 WRDYFRFICLKHGNKIFRLSGLQGVSIPWKE--DWER----FECWRTGTTGFPLVDANMR 365

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   G+M NR R   ASFL K+L ++W++G E+F S L+D D+ SN G W + A  GND
Sbjct: 366 ELAATGFMSNRGRQNVASFLTKNLGINWKMGAEWFESLLVDYDVCSNWGNWNYTAGVGND 425

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------DLS 453
           +   FR FN   Q K +D  G +++HWLPEL  +P   +H P  W+ +          L 
Sbjct: 426 ARG-FRYFNIPKQAKDYDSNGDYVKHWLPELAALPASKVHEP--WMLQPVEQKRFGVKLG 482

Query: 454 LNYPLPIVDHKKACHHTLNQYYAA 477
           ++YP P+VD  K+       Y AA
Sbjct: 483 VDYPNPVVDLMKSVQSNKKSYEAA 506


>gi|227548195|ref|ZP_03978244.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079756|gb|EEI17719.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 440

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/458 (29%), Positives = 209/458 (45%), Gaps = 82/458 (17%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R+DLR+ DN AL  A       V+ +++    +    GI    + ++  SL  +++
Sbjct: 6   IVWFRDDLRLADNAALTWATERG--PVVGLYV---HETVGRGIGRAAAWWLRHSLDALRE 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL    I           D  E +     ++    + +NR+Y + ++      +  ++  
Sbjct: 61  SLPAPLIELA-------GDPRE-IVPRLARELGAAVTWNRRYHLTDI------DAEVKEA 106

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
               S    +L  P  +       Y+V+TPF  A    L+ A    LPVP I      TP
Sbjct: 107 TGAVSHPGYLLTEPWDVR---ATPYRVFTPFFNAARSVLLDAPPTPLPVPHI------TP 157

Query: 191 SNIPRFFDYPFQAIDPMFPI-----------GEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           ++I      P     P  P            GE  A   L++F      Y     D  A+
Sbjct: 158 ADI-----GPATVYAPAEPAWAASLAQHNTPGEGAAREQLKRFIAASADY-----DNNAL 207

Query: 240 QG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            G TS LSP+L  G +SP + W          L    +GA+++  +L+WR+F  H     
Sbjct: 208 DGVTSGLSPHLRFGEISPAEVW----------LAAVDAGAWAFARQLLWRDFAWHRYYHV 257

Query: 299 PSVC---MGKPF----IPWT-EKIEWNKDSHL--------------LQAWKQGYTGFPII 336
           P +    + + F      WT   +  + D+                L AW+ G TG P++
Sbjct: 258 PDMATKNVRRKFDRFDWEWTPNAVPGSTDAAFAHAEMDPGAQHMKELAAWQSGRTGIPLV 317

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DA MR+L   G MHNR+RM++ S+L K+L + WR GEE+F   L+D D ASN   WQW A
Sbjct: 318 DAGMRELWATGRMHNRVRMVSGSWLTKNLGIHWRHGEEWFWDTLVDADAASNAFNWQWVA 377

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
            +G+D+ PYFRIFNP  Q ++FDP G+++  WLP+  +
Sbjct: 378 GSGDDAAPYFRIFNPLTQAEKFDPHGSYVARWLPDTAD 415


>gi|302772993|ref|XP_002969914.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii]
 gi|300162425|gb|EFJ29038.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii]
          Length = 559

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 143/488 (29%), Positives = 236/488 (48%), Gaps = 36/488 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + + +LVW R DLR+ DN AL AA  N+   V+ +FI  P +  +         ++  SL
Sbjct: 4   SKACNLVWFRRDLRVEDNPALLAA-ANAPGVVLPIFIWCPAEEGEFQPGRHSRWWLKQSL 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLE 124
           + +  SL+  G      +    +D++  L +       T++F N  Y +   V RD+ ++
Sbjct: 63  IHLDASLASYGCSLLLQKG---NDTLSVLVNIARATGSTQIFCNHLYADPITVARDRRVK 119

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------RSL 177
           +RL ++ +   +F+   L  P  I +     +  +  F    ++   + D+      R  
Sbjct: 120 QRLLEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSSQARLF 179

Query: 178 P----VPAIRLTGPV-TPSNIPRFF--DYPFQAIDPMFPI----GEQNALHILRKFCKEK 226
           P    +  I   G + TP +I      D   ++ + +       G ++A   L+ F    
Sbjct: 180 PYREYLDLISFAGNLPTPCSIEELCLEDESEKSSNELLARTWSPGCKHANDALQAFLVGP 239

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNE 284
           +  Y   R+  A   TS LSPYL  G LS R+ +N  R K+   + L  P+  A  +L  
Sbjct: 240 LNDYTTSRET-ADNSTSHLSPYLHFGELSIRKLYNCIRSKQRDEEQLFCPRRNAHLFLRA 298

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           +  RE+ R++   +P            +   W  D    +AWK G TG+P++DAAMR+L 
Sbjct: 299 IGLREYSRYISFHFPFTQEQSLL----KNFPWRNDEIHFKAWKLGKTGYPLVDAAMRELW 354

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
           + GW+H +LR++T+SFL+K L + W  G +YF   LLD DL S+  GW++ +    D   
Sbjct: 355 STGWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCLTDGHE 414

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPL 458
             R+ +P  +G + DP+G ++R WLPEL+ +P Q+IH P+S           +L  NYP 
Sbjct: 415 LDRVLDPHEEGCKLDPKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELGTNYPK 474

Query: 459 PIVDHKKA 466
           PIVD + A
Sbjct: 475 PIVDMEVA 482


>gi|255545724|ref|XP_002513922.1| DNA photolyase, putative [Ricinus communis]
 gi|223547008|gb|EEF48505.1| DNA photolyase, putative [Ricinus communis]
          Length = 660

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 152/486 (31%), Positives = 222/486 (45%), Gaps = 65/486 (13%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYA 63
           +     +VW R DLR+ DN AL A        V+AVF+  PE+   H    R S + +  
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEE-EGHYYPGRVSRWWLKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122
           SL  +  SL   G V    + +   DS+  L         T+LF+N  Y+ I+ VR  + 
Sbjct: 59  SLAHLDSSLRSLGTVLVSKRST---DSVSSLLEVVKSTGATQLFFNHLYDPISLVRDHRA 115

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQM-YKVYTPFRKALIQNLVQADLRSLPVPA 181
            E      +  +S      + PG      L M Y    P                LP P 
Sbjct: 116 KEVLTAQGIAVRSLTRICYMNPGXX---CLSMPYDPEAPL---------------LP-PK 156

Query: 182 IRLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRD 235
             ++G ++  PS+   F D   +  + +       G  NA   L  F    +  Y + R 
Sbjct: 157 RIISGDISRCPSDTLIFEDESEKGSNALLARAWSPGWSNANKALTTFINGPLIEYSKNRR 216

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQC----------W----NRLKEEFVDLLIKPKSGAFSW 281
                 TS LSP+L  G +S R+           W    N+  EE V+L +K        
Sbjct: 217 KADSATTSFLSPHLHFGEVSVRKVLHLVRIKQVLWANEGNKAGEESVNLFLK-------- 268

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
              +  RE+ R+L   +P     +P +   +   W  +    +AW+QG TG+P++DA MR
Sbjct: 269 --SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWIVNEGYFKAWRQGRTGYPLVDAGMR 325

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D
Sbjct: 326 ELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPD 385

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--N 455
              + RI NP  +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  N
Sbjct: 386 GREFDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSN 445

Query: 456 YPLPIV 461
           YPLPIV
Sbjct: 446 YPLPIV 451


>gi|218191203|gb|EEC73630.1| hypothetical protein OsI_08136 [Oryza sativa Indica Group]
          Length = 665

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 138/487 (28%), Positives = 228/487 (46%), Gaps = 42/487 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL +A    D  V+ VFI  P    Q         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128
           SL   G  +      S  +  +  +DS       T+L YN  Y+ ++ VR DK+ ++   
Sbjct: 66  SLESLGCPLVLIRAESTLEALLRCIDSV----GATRLVYNHLYDPVSLVRDDKIKKELSA 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAIR 183
             +  +SF+  +L  P  I + +   +  +  + +  ++  +      A  + +PVP + 
Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDVSPSLAPWKLVPVPGLE 181

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  ++        ++ + +       G +NA  +L +F    +  Y +       
Sbjct: 182 SVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
             TS LSPYL  G +S R+ +  ++ + +    +  S A      ++  +  RE+ R+L 
Sbjct: 242 ATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYLC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     K  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+
Sbjct: 302 FNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI-- 413
           I +SF VK LL+ W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP I  
Sbjct: 361 IISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEIME 420

Query: 414 ------------QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLN 455
                       QG+++DP G ++R W+PEL  +PT++IH    AP   L+    +L  N
Sbjct: 421 NVIATYYALCMVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFN 480

Query: 456 YPLPIVD 462
           YP PIVD
Sbjct: 481 YPKPIVD 487


>gi|159029066|emb|CAO90052.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 485

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 145/498 (29%), Positives = 245/498 (49%), Gaps = 53/498 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62
           L+W RNDLR+ D++A+Y A    +   I  F    E  RQ G ++         ++ F+ 
Sbjct: 4   LIWYRNDLRVHDHEAIYRAIQ--EQLEIIPFYCFDE--RQFGFTSYGFPKTGKFRAKFLL 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  +Q+SL   G      +        E +     + ++ +++Y+++    E+  +K 
Sbjct: 60  ESVANLQQSLEGLGGNLIIRRGK----PEEIIPQLVQELQIARVYYHQEVTAEELAVEKA 115

Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           + K L    V  K+F  + L  P  +     Q+ +++T FRK + ++    ++R+     
Sbjct: 116 VNKALSGVPVQIKTFWTATLYHPDDLPFTVNQLPELFTNFRKQIERHW---EIRTTYASP 172

Query: 182 IRLTG--PVTPSNIPRFFDYPFQAI------DPMFPIGEQNALHILRKFC--KEKVYYYV 231
            +LT    +   N+P   D     +         F  GE      ++++    + +  Y 
Sbjct: 173 KKLTKLPKIDWGNLPSLNDLGLTELILDRGGVLSFQGGEMAGKSRVKEYIWDSDSLKTYK 232

Query: 232 EQR-DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           E R ++     +S+ S +LS+G LSPR  +  + +++    +K  S  +  + EL+WR+F
Sbjct: 233 ETRNEMLGTNYSSKFSAWLSLGCLSPRYIYEEV-QKYEQTRVKNDS-TYWLIFELLWRDF 290

Query: 291 YRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           +R + +      FY S  + +  +PW E  +W +       W +G TG+P++DA MR+L 
Sbjct: 291 FRFICSKHGNKIFYKS-GLQELNLPWLE--DWQR----FNLWCEGKTGYPLVDANMRELA 343

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+M NR R   ASFL K+L +DWR+G E+F S L+D D+ SN G W + A  GND+  
Sbjct: 344 ATGFMSNRGRQNVASFLTKNLGIDWRMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARG 403

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKND-----LSLNYPL 458
            FR FN   Q K +DP+G ++RHWLPEL  +    IH P+   L++       L +NYP 
Sbjct: 404 -FRYFNIPKQSKDYDPKGDYLRHWLPELALIKGDKIHEPYKLSLEEQKRYGVILGVNYPR 462

Query: 459 PIVDHKKACHHTLNQYYA 476
           PIVD  ++  H    Y A
Sbjct: 463 PIVDFFQSIKHNEKIYLA 480


>gi|268679778|ref|YP_003304209.1| deoxyribodipyrimidine photo-lyase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617809|gb|ACZ12174.1| Deoxyribodipyrimidine photo-lyase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 452

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 141/492 (28%), Positives = 216/492 (43%), Gaps = 75/492 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ D+  L     + + +V+ +FI           + R+  FI+  +L ++ 
Sbjct: 4   VLWFRRDLRVDDSMLL-----SVEGEVLPIFIFDTHILNSLPKTDRRVAFIFEQVLSLKA 58

Query: 71  SLSQKGI-----------VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
            L   G+           VF Y +   F D    +D                Y+     R
Sbjct: 59  KLKALGLDLALFYGTPLEVFSYLKTLGFSDVYASVD----------------YDAYAKER 102

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D+ +   L+   +    +DS L  P  +L      Y V+TPF KA  Q   Q  +     
Sbjct: 103 DEKVGAILRFHAL----NDSYLFEPTEVLKKDGTPYLVFTPFYKACQQLYTQFHVLKYTK 158

Query: 180 PAIRLTG-----------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
              RL                    V   NI  F     + ++P        AL      
Sbjct: 159 ATQRLCEFDCSALWHIEKESKTALHVKMENIG-FIPLHVKLLEP------HKALEAFT-- 209

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           CK   Y     RD  A   TS LS +L  G +  R+    L       L K       + 
Sbjct: 210 CKLDAY--AHDRDFLACDATSHLSVHLRFGTIGIREVVRYLVA-----LKKQGHTTEPFF 262

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +LI+REFY +L+  +P +        +T   E N++S+  + +    TG+P++DAA+R+
Sbjct: 263 RQLIFREFYAYLLYHFPHLAWKN--YKYTPPYEENQESY--ERFITAQTGYPLVDAAVRE 318

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G MHNR RM+  SF  K LL+ W+ GE +F   LLD D ++N   WQW A TG D 
Sbjct: 319 LLETGLMHNRARMVVGSFFTKHLLLPWQRGEAFFAEHLLDYDASANILSWQWCAGTGIDP 378

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
            PYFRIFNP  Q  +FD +  +I+ +LP+L ++P+  +H   S+L  +++  +YP PI+ 
Sbjct: 379 QPYFRIFNPYAQSLKFDKEALYIKRFLPQLRDIPSSLLHK-ESYLLSHNIP-HYPKPIIQ 436

Query: 463 HKKACHHTLNQY 474
           H+KA    LN +
Sbjct: 437 HEKARKRFLNAF 448


>gi|6594298|dbj|BAA88424.1| blue light photoreceptor [Adiantum capillus-veneris]
 gi|6594302|dbj|BAA88426.1| blue light photoreceptor [Adiantum capillus-veneris]
          Length = 487

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 231/479 (48%), Gaps = 26/479 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VWLR DLR+ DN AL  A    +A V+ VF+  PE+  Q         ++  SL Q
Sbjct: 4   STTIVWLRRDLRLDDNPALKEASKIGNA-VVPVFVWVPEEEGQFQQGRMSRWWLKQSLKQ 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126
           + +SL   G      + S+   S++ L    +  + +++F+N  Y+ I+ VR  ++ E  
Sbjct: 63  LAQSLDSLGSPLIIRRSSS---SLQALMDLVIHTQASQVFFNHLYDPISLVRDQRVKEGL 119

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-------LRSLPV 179
           LQ  +  ++F+  +L  P  + + + + +  +  F    + N+ +          RSL  
Sbjct: 120 LQTGIHVRTFNADLLYEPWQVNDPSGKAFTTFNEFWDKCL-NMPEEPHAPLLPPTRSLLA 178

Query: 180 PAIRLTG-PVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            A  L G  V    +    +    A+    +  G  NA   L  F +  +  Y   + + 
Sbjct: 179 FAGHLPGCTVEDLELENNSEKDSNALLARSWTPGWINAEKALEAFVERHLLQYAANQHMV 238

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI----WREFYRH 293
               TS LSP+L  G LS R+ +  ++ + V    + K      +N  +     R++ R+
Sbjct: 239 DGSTTSFLSPHLHFGELSVRKVFYNVRIKAVQWTKEGKPDGEQSVNLFLRSIGLRDYSRY 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   +P     +  +       W  D  L +AW+QG TG+P++DA MRQ+   GW+HNR+
Sbjct: 299 ICFNFP-FTHERLILQNRRPFPWRVDEGLFKAWRQGRTGYPLVDAGMRQIWATGWLHNRI 357

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R+I +SF VK L + W  G +YF   LLD DL ++  GWQ+ +    D     R+ +  I
Sbjct: 358 RVIVSSFFVKVLQLPWTWGMKYFWDALLDADLENDILGWQYISGGLPDGHELERMDDLQI 417

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466
           +G ++DP+G ++R WLPEL+ +PT++IH P     +       +L  NYP P+V+   A
Sbjct: 418 EGYKYDPRGEYVRKWLPELSRLPTEWIHHPWDAPPRALRAAGVELGSNYPRPLVEFAAA 476


>gi|291303346|ref|YP_003514624.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM
           44728]
 gi|290572566|gb|ADD45531.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM
           44728]
          Length = 436

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 133/432 (30%), Positives = 198/432 (45%), Gaps = 43/432 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V    DLRI DN AL  A  ++D  V+ +++A         +   Q  F+  SL 
Sbjct: 37  MRTIVVLFTRDLRIRDNPALALASRHADT-VVPLYVADDSP----PLPPNQRRFLVESLT 91

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEK 125
            +++SL + G      +     D +E     C       +     Y     R R +L E 
Sbjct: 92  DLRESLRRLGGDLLVRRG----DPVEQTLKLCRLLATDGIGMAEDYGPAARRLRQRLAEA 147

Query: 126 RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
               RV  + F    ++ PG++        YKV+TP+ ++      + +  +    AIRL
Sbjct: 148 AEAERVGLRLFPGVTIVEPGAVRPTTGADHYKVFTPYLRSWSATPWRPEHEA--PQAIRL 205

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
              VT        D P   I P+          GE   L     +   +  Y     D+ 
Sbjct: 206 PADVT-------GDDPASVIGPVEGGSSDVVDGGETAGLRRWDSWIDREPDYPAIHDDL- 257

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A   T++LS YL  G +SP           + +   P++   + + +L WR+FY  ++  
Sbjct: 258 AADDTTRLSGYLRFGCVSP-----------LVVAADPRT-PEALVRQLCWRDFYHQVLHG 305

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +     + P   +  W  D   L+AW+ G TG P++DA MRQL T GWMHNR RM+ 
Sbjct: 306 FPRLATDN-YRP-GARDAWVDDEPALRAWQDGETGVPLVDAGMRQLRTQGWMHNRARMVA 363

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+L KDL +DWR G  +F   L+D D+A+N G WQW A TGNDS PY R FNP  Q +R
Sbjct: 364 ASYLTKDLGIDWRHGAAWFDRWLVDADVANNYGNWQWTAGTGNDSRPYRR-FNPARQAQR 422

Query: 418 FDPQGTFIRHWL 429
           +DP+  +   WL
Sbjct: 423 YDPRHEYRDRWL 434


>gi|28201254|dbj|BAB70688.2| cryptochrome 1b [Oryza sativa Japonica Group]
          Length = 700

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 148/478 (30%), Positives = 225/478 (47%), Gaps = 42/478 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA      +V+  ++  PE+   +        ++  SL  +  
Sbjct: 21  VVWFRRDLRVEDNPALAAAARAG-GEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
           SL + G      + S   D++  L         T+LF+N  Y+ I+ VR  +L E     
Sbjct: 80  SLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAE 137

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +I +SF+  +L  P  +++   Q + ++ PF    +          LP   I  +G ++
Sbjct: 138 GIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRIN-SGDLS 196

Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             PS+   F D   +  + +       G QNA   L  F    + +Y   R       TS
Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSPYL  G LS R+ +              NR  EE   L ++           +  RE
Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR----------SIGLRE 306

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R+L   +P     KP +       W  +    + W+QG TG+P++DA MR+L   GW+
Sbjct: 307 YSRYLSFNHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWL 365

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI 
Sbjct: 366 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRID 425

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461
           NP ++G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV
Sbjct: 426 NPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIV 483


>gi|115458700|ref|NP_001052950.1| Os04g0452100 [Oryza sativa Japonica Group]
 gi|113564521|dbj|BAF14864.1| Os04g0452100 [Oryza sativa Japonica Group]
 gi|218194950|gb|EEC77377.1| hypothetical protein OsI_16111 [Oryza sativa Indica Group]
          Length = 700

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 148/478 (30%), Positives = 225/478 (47%), Gaps = 42/478 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA      +V+  ++  PE+   +        ++  SL  +  
Sbjct: 21  VVWFRRDLRVEDNPALAAAARAG-GEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
           SL + G      + S   D++  L         T+LF+N  Y+ I+ VR  +L E     
Sbjct: 80  SLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAE 137

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +I +SF+  +L  P  +++   Q + ++ PF    +          LP   I  +G ++
Sbjct: 138 GIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRIN-SGDLS 196

Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             PS+   F D   +  + +       G QNA   L  F    + +Y   R       TS
Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSPYL  G LS R+ +              NR  EE   L ++           +  RE
Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR----------SIGLRE 306

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R+L   +P     KP +       W  +    + W+QG TG+P++DA MR+L   GW+
Sbjct: 307 YSRYLSFNHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWL 365

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI 
Sbjct: 366 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRID 425

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461
           NP ++G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV
Sbjct: 426 NPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIV 483


>gi|21740729|emb|CAD40850.1| OSJNBa0086B14.23 [Oryza sativa Japonica Group]
 gi|116310174|emb|CAH67187.1| H0815C01.8 [Oryza sativa Indica Group]
          Length = 693

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 148/478 (30%), Positives = 225/478 (47%), Gaps = 42/478 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA      +V+  ++  PE+   +        ++  SL  +  
Sbjct: 14  VVWFRRDLRVEDNPALAAAARAG-GEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
           SL + G      + S   D++  L         T+LF+N  Y+ I+ VR  +L E     
Sbjct: 73  SLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAE 130

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +I +SF+  +L  P  +++   Q + ++ PF    +          LP   I  +G ++
Sbjct: 131 GIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRIN-SGDLS 189

Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             PS+   F D   +  + +       G QNA   L  F    + +Y   R       TS
Sbjct: 190 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 249

Query: 244 QLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            LSPYL  G LS R+ +              NR  EE   L ++           +  RE
Sbjct: 250 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR----------SIGLRE 299

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R+L   +P     KP +       W  +    + W+QG TG+P++DA MR+L   GW+
Sbjct: 300 YSRYLSFNHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWL 358

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI 
Sbjct: 359 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRID 418

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461
           NP ++G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV
Sbjct: 419 NPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIV 476


>gi|86605025|ref|YP_473788.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
 gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
          Length = 488

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 144/501 (28%), Positives = 235/501 (46%), Gaps = 57/501 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASL 65
           L+W R DLR+ D++ L  AC    + +I ++   P  + +           ++ F+  SL
Sbjct: 4   LLWFRTDLRLLDHQPLTRACQQG-SFLIPLYCLDPRHFGRTAFGFPKTGPFRAQFLLESL 62

Query: 66  LQVQKSLSQKG--IVFQYHQCSNFDDSI--EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +++ L  +G  +V +  Q      ++  EW         V  ++ + +    E    +
Sbjct: 63  ADLRQQLRARGSDLVIRQGQPEQVIPALAREW--------GVKAVYAHEEVGTEEEAVAR 114

Query: 122 LLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFR-----KALIQNLVQADLR 175
            L++ LQ   I    +    L  P  +      + +V+T FR     KA I+  +     
Sbjct: 115 ALQQALQPLGIPLHLEWGHTLYHPADLPFALADLPEVFTRFRQQVEAKAAIRAPLPIPSL 174

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQ 233
               P +      T + +      P      ++  G   A   L+ +    +++  Y E 
Sbjct: 175 PPLPPGLDPGPLPTLAELGLSLPPPDPRARFVYAGGSTAAQARLQTYIWDLDRLRVYKET 234

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWLN-ELIWR 288
           R+ +     +S+LS +L++G LSPR  +    R +EE V      ++ +  WL  EL+WR
Sbjct: 235 RNGMLDPNDSSRLSAWLALGCLSPRTVYAEVKRYEEERV------RNESTYWLVFELLWR 288

Query: 289 EFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           +++R ++A      F P+   G P       I W +D    QAW +G TG+P++DA MR+
Sbjct: 289 DYFRFILAKHGAKLFCPAGIQGIP-------IPWQQDGDRFQAWCRGETGYPLVDANMRE 341

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G+M NR R   ASFL K+L +DWR+G E+F S L+D D+ASN G W + A  GND+
Sbjct: 342 LAATGFMSNRGRQNVASFLTKNLGIDWRLGAEWFESLLIDYDVASNYGNWNYTAGVGNDA 401

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456
              FR F+   Q + +DPQG ++RHWLPEL  +P   IH P+             L ++Y
Sbjct: 402 RG-FRYFHIPKQSRDYDPQGHYLRHWLPELAGIPGDKIHEPYRLSAAEQKQFGVRLGVDY 460

Query: 457 PLPIVDHKKACHHTLNQYYAA 477
           P P+VD  K+   +   Y AA
Sbjct: 461 PRPVVDLGKSLQASRRAYEAA 481


>gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
 gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
          Length = 486

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 151/505 (29%), Positives = 244/505 (48%), Gaps = 65/505 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKV------IAVFIATPEQWRQHGISARQSHFIYAS 64
           L+W RNDLRI D++ LY      D  +      I  F  T   + + G    +  F+  S
Sbjct: 7   LIWYRNDLRIHDHEPLYQGIKEGDLVIPFYCFDIRQFQTTSYAFPKTG--NFRGQFLLES 64

Query: 65  LLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           +  +++SL   G   IV + +      + I+ L+       +  ++++ +    E + +K
Sbjct: 65  VANLRQSLQDLGSDLIVRKGYPEKIIPELIKELE-------IDAVYFHEEVTSEETKVEK 117

Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +++ L+  +V    F  + L     +     Q+ +V+T FRK + +N       +L  P
Sbjct: 118 KVKQALKPLKVKVPGFWGATLYHWNDLPFEVNQLPEVFTSFRKKVEKNSTVNP--TLITP 175

Query: 181 AIRLTGP-VTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEK--VYYYV 231
              L+ P V   NIP   +   +  D        F  GE   +  L+ +  E+  +  Y 
Sbjct: 176 RKLLSLPDVEIGNIPSLEELGLKKSDSDSRGVLNFKGGETAGIKRLQDYFWERNCLKEYK 235

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRL---KEEFVDLLIKPKSGAFSWL-NELI 286
           E R+ +     +S+ SP+L+ G LSPR  +  +   +EE V      K+ +  WL  EL+
Sbjct: 236 ETRNGMLGADYSSKFSPWLAHGCLSPRYIYEEVQKYEEERV------KNNSTYWLIFELL 289

Query: 287 WREFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           WR+++R + A      FY S   G   IPW E    ++D  +L  W++G TG+P++DA M
Sbjct: 290 WRDYFRFICAKHGNKIFYKSGLQGLD-IPWKE----DQDRFIL--WQEGKTGYPLVDANM 342

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R++   G+M NR R   ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GN
Sbjct: 343 REIAATGFMSNRGRQNVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGN 402

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------L 452
           D+   FR FN   Q K +D +G ++RHWLPEL  +P   IH P  W    D        +
Sbjct: 403 DARG-FRYFNIPKQSKDYDSKGDYLRHWLPELKMIPGDKIHEP--WKLSQDEQKRYNVRI 459

Query: 453 SLNYPLPIVDHKKACHHTLNQYYAA 477
            ++YP P+VD  K+       Y +A
Sbjct: 460 GVDYPKPVVDFFKSVKANEKVYNSA 484


>gi|330814060|ref|YP_004358299.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487155|gb|AEA81560.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 184

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 112/169 (66%), Gaps = 6/169 (3%)

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
           +K  W +D   L+ WKQG TG+PI+DA MR+L+  GWMHNR+RMITASFLVK L ++W  
Sbjct: 11  DKFNWVRDDAKLKKWKQGKTGYPIVDAGMRELSETGWMHNRVRMITASFLVKHLRINWVE 70

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           GE++F   LLD ++ +N  GWQW A  G D+ PYFRIFNP +QG++FD +G +++ W+ E
Sbjct: 71  GEKHFRDCLLDFNVPNNVAGWQWVAGCGADAAPYFRIFNPILQGEKFDSEGMYVKKWVKE 130

Query: 432 LNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQY 474
           LN +P +YIH P    +        +L  NY  PIV+H +A +  L  +
Sbjct: 131 LNPIPKKYIHKPWEMPEDEQSKVNFNLKKNYYAPIVNHAEARNSALEAF 179


>gi|302799264|ref|XP_002981391.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii]
 gi|300150931|gb|EFJ17579.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii]
          Length = 559

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 141/488 (28%), Positives = 235/488 (48%), Gaps = 36/488 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + + +LVW R DLR+ DN AL AA  N+   V+ +FI  P +  +         ++  SL
Sbjct: 4   SKACNLVWFRRDLRVEDNPALLAA-ANAPGVVLPIFIWCPAEEGEFQPGRHSRWWLKQSL 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLE 124
           + +  SL+  G      +    +D++  L +       T++F N  Y +   V RD+ ++
Sbjct: 63  IHLDASLASYGCSLLLQKG---NDTLSVLVNIARATGSTQIFCNHLYADPITVARDRRVK 119

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------RSL 177
           +RL ++ +   +F+   L  P  I +     +  +  F    ++   + D+      R  
Sbjct: 120 QRLLEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSSQARIF 179

Query: 178 P----VPAIRLTGPV-TPSNIPRFF--DYPFQAIDPMFPI----GEQNALHILRKFCKEK 226
           P    +  I   G + TP +I      D   ++ + +       G ++A   L+ F    
Sbjct: 180 PYREYLDVISFAGNLPTPCSIEELCLEDESEKSSNELLARTWSPGCKHANDALQAFLVAP 239

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNE 284
           +  Y   R+      TS LSPYL  G LS R+ +N  R K+   + L  P+  A  +L  
Sbjct: 240 LNDYTTSRET-TDNSTSHLSPYLHFGELSIRKLYNCIRSKQRDEEQLFCPRRNAHLFLRA 298

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           +  RE+ R++   +P            +   W+ D    +AWK G TG+P++DAAMR+L 
Sbjct: 299 IGLREYSRYISFHFPFTQEQSLL----KNFPWSNDEIHFKAWKLGKTGYPLVDAAMRELW 354

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
           + GW+H +LR++T+SFL+K L + W  G +YF   LLD DL S+  GW++ +    D   
Sbjct: 355 STGWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCLTDGHE 414

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPL 458
             R+ +P  +G + D +G ++R WLPEL+ +P Q+IH P+S           +L  NYP 
Sbjct: 415 LDRVLDPHEEGCKLDSKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELGTNYPK 474

Query: 459 PIVDHKKA 466
           PIVD + A
Sbjct: 475 PIVDMEVA 482


>gi|77963980|gb|ABB13331.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
 gi|77963982|gb|ABB13332.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
 gi|77963984|gb|ABB13333.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
          Length = 712

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 150/478 (31%), Positives = 231/478 (48%), Gaps = 32/478 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA   +  +V+  ++ +PE+   +        ++  SL  ++ 
Sbjct: 18  VVWFRRDLRVEDNPALAAAARTA-GEVVPAYVWSPEEDGPYFPGRVSRWWLSQSLKHLEA 76

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
           SL + G      + S   DS+  L         T LF+N  Y+ I+ VR  +L E     
Sbjct: 77  SLHRLGAGKLVTRRSA--DSVAALLQLVRDTGATHLFFNHLYDPISLVRDHRLKEMLTSE 134

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            ++ +SF+  +L  P  + +   Q + ++ PF    +          LP   I  +G ++
Sbjct: 135 GIVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRIN-SGDLS 193

Query: 190 --PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             PS+   F D   +  + +       G QNA   L  F    +  Y   R       TS
Sbjct: 194 MCPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSANTS 253

Query: 244 QLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHL 294
            LSPYL  G LS R+ ++  R+K+     L+    G  +       +L  +  RE+ R+L
Sbjct: 254 LLSPYLHFGELSVRKVFHLVRMKQ-----LVWSNEGNHAAEESCTLFLRSVGLREYSRYL 308

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R
Sbjct: 309 CFNHP-CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIR 367

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           ++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  DS     I NP ++
Sbjct: 368 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLE 427

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV+   A
Sbjct: 428 GYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTA 485


>gi|227344531|gb|ACP27856.1| blue light photoreceptor [Fragaria vesca]
 gi|270303922|gb|ACZ71184.1| blue light photoreceptor [Fragaria vesca]
          Length = 645

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 141/483 (29%), Positives = 226/483 (46%), Gaps = 51/483 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYASLLQVQ 69
           +VW R DLRI DN AL AA    D  V  V+I  P+    H    R S + +  SL  + 
Sbjct: 8   IVWFRRDLRIEDNPALAAAAR--DGAVFPVYIWCPKD-EGHFYPGRVSRWWLKQSLAHLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYE-INEVRRDKLLEKRL 127
           +SL   G      +  +   ++  LD  C+Q    TK+ +N  Y+ ++ VR   +  K +
Sbjct: 65  QSLKSLGAQLALIKTDSTVSAL--LD--CIQAIGATKVVFNHLYDPVSLVRDHNIKGKLV 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--PVPAIRLT 185
           +  +  +S++  +L  P  + +   Q +  +  +    +   ++ +L +   P   ++ T
Sbjct: 121 ELGISVQSYNADLLHEPWEVYDAKGQTFTTFKEYWDKCLN--MERELVTFLPPWKLLQAT 178

Query: 186 GPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           G V   ++                +   +  G   A   L +F    +  Y + R     
Sbjct: 179 GMVAKYSLEELGLENETEKSSNALLGRAWTPGWSQADKALTEFFDVHLLDYAKNRTKLGG 238

Query: 240 QGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNEL 285
             TS LSPYL  G +S R+ +              N L EE V L ++           +
Sbjct: 239 NSTSLLSPYLHFGEVSVRKVFQLARMKQILFAKEGNSLGEESVTLFLRA----------I 288

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
             REF R++   +P     K  +       W  D    +AW+QG TG+P++DA MR+L  
Sbjct: 289 GLREFSRYICFNFP-FTHEKLLLSNLRFFPWKADQGRFKAWRQGRTGYPLVDAGMRELWA 347

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GW+HNR+R+I +SF VK LL+ W+ G +YF   L+D DL S+  GWQ+ + +  D    
Sbjct: 348 TGWIHNRIRVIVSSFAVKVLLLPWKWGMKYFWDTLMDADLESDILGWQYISGSLPDGHEL 407

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLP 459
            R+ +P +QG +FDP G ++RHWLPEL  +PT++IH P    D        +L +NYP P
Sbjct: 408 ERLDSPEVQGSKFDPDGEYVRHWLPELARLPTEWIHHPWDTPDNVLKVSGVELGVNYPRP 467

Query: 460 IVD 462
           I++
Sbjct: 468 IIE 470


>gi|161138116|gb|ABX58029.1| cryptochrome 2 [Triticum aestivum]
          Length = 650

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 229/474 (48%), Gaps = 30/474 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    D  V+ VFI  P +  +         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNPALAAAAR--DGAVLPVFIWCPAEEGRFYTGRCSRWWLKESLAHLAR 65

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127
           SL   G  +V    Q +     ++ +DS       T++ Y   Y+ I+ VR DK+  + L
Sbjct: 66  SLQALGCPLVLIRAQ-TTLAALLQCVDSIG----ATRVVYIHLYDPISLVRDDKIKNELL 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAI 182
              +  +SF+  +L  P  + +     +  +  + +  ++  +      A  R +PV  I
Sbjct: 121 GLGISMQSFNGDLLYEPWEVYDENGLPFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSGI 180

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIPA 238
                 +  N+        ++ + +       G +NA   L  F    +  Y + R   A
Sbjct: 181 ENICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVA 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS  SPYL  G +S R+ +  ++ + +    + KSGA      +L  +  RE+ R+L
Sbjct: 241 GTTTSLSSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESDNLFLLSIGLREYSRYL 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R
Sbjct: 301 CFNFP-FTRERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK L + W  G +YF   LLD D+ S+  GWQ+ + +  D     R+ NP +Q
Sbjct: 360 VIVSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQ 419

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLD--KNDLSLNYPLPIVD 462
           G+++DP G ++R W+PEL  +P ++IH    AP S L+    +L  NYP+PIV+
Sbjct: 420 GQKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVE 473


>gi|255964971|gb|ACU44658.1| cryptochrome 2B [Medicago sativa]
          Length = 484

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 196/379 (51%), Gaps = 20/379 (5%)

Query: 102 RVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160
           +  K+ +N  Y+ ++ VR   + EK ++  +  +S++  +L  P  I + +   +  + P
Sbjct: 48  QAEKVVFNHLYDPVSLVRDHNIKEKLVELGISVQSYNGDLLHEPWHIYDESGHAFTTFDP 107

Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF-----FDYPFQAI-DPMFPIGEQN 214
           F    +Q  ++      P   I   G V   +I +       +    A+    +  G   
Sbjct: 108 FWNRCLQMQMKTYSPIPPCQLILAQGKVEKHSIEQLGLENELETSSNALLARAWSPGWSK 167

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-----D 269
           +   L +F +  + +Y + R    +  TS LSPY+  G LS R+ +   + + +      
Sbjct: 168 SDKALTEFVENNLIHYTKSRLNLGVDSTSLLSPYIHFGELSVRKVFQLARTKQILWKNEG 227

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
            ++  +S  F +L  + +RE+ R+L   +P   + +P +   +   WN D  + +AW+ G
Sbjct: 228 NIVGEESATF-FLKAIGFREYSRYLCFSFP-FTVERPLLGNLKFFPWNTDPSMFKAWRLG 285

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P++DA MR+L   GW+HN++R+I +SF VK LL+ W+ G +YF   LLD DL S+ 
Sbjct: 286 RTGYPLVDAGMRELWATGWIHNKMRVIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDI 345

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHS 445
            GWQ+ + +  D     R+ +P IQG ++D +G ++R WLPEL  +PT++IH    AP +
Sbjct: 346 LGWQYISGSLPDGHELERLDDPEIQGTKYDSEGEYVRQWLPELARIPTEWIHHPWNAPPT 405

Query: 446 WLDKNDLSL--NYPLPIVD 462
            L  + + L  NYP PI+D
Sbjct: 406 VLRASGVELGQNYPKPIID 424


>gi|321475718|gb|EFX86680.1| hypothetical protein DAPPUDRAFT_307800 [Daphnia pulex]
          Length = 520

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 157/496 (31%), Positives = 232/496 (46%), Gaps = 68/496 (13%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--------QHGISARQSHF 60
           V +   RNDLR  DN+ + A  H S   V+ ++   P  +         + GI   ++ F
Sbjct: 11  VAICLFRNDLRYHDNEVI-ALAHKSADFVLPLYCFDPRHFEGTHHYKFPKTGIF--RTQF 67

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  S+   +++L ++G        S  ++++  +       +VT +    Q E+ +   D
Sbjct: 68  LLESVEDFRQTLVKRGSNLMIVH-SKPEEALLKIFKSLTGLKVTLIL---QTEVTKEETD 123

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHA----LQMYKV---YTPFRKALIQNLVQAD 173
             +EKRLQ   IC+    S +   GS L H      Q+  V   YT FRK + + L    
Sbjct: 124 --VEKRLQK--ICQEIKASYINCWGSTLYHKGDLPFQINHVPDSYTGFRKDVEEKLRIRP 179

Query: 174 LRSLP---VPAIRLTGPVTPSNIPRF----FDYPFQAIDPMFPI--GEQNALHILRKFC- 223
             S+P    P       +   N+P         P       FP   GE  AL  L+ +  
Sbjct: 180 EISMPDKMKPVPTFAHEIPWGNLPTIEALNSTKPIPNSSSAFPFNGGETAALLRLKSYLW 239

Query: 224 -KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQC-WNRLKEEFVDLLIKPKSGAFS 280
               V  Y E R+ +     +++ S +LS G LSPR+  W   K E    L + K+ +  
Sbjct: 240 DTNAVAQYKETRNGLIGSDYSTKFSSWLSHGCLSPRRIHWELEKYE----LQRTKNQSTY 295

Query: 281 WLN-ELIWREFYRHLMA------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
           W+  EL+WR++++ +        FYP+   G+       + +W KD  L +AW+ G TG 
Sbjct: 296 WVRFELLWRDYFKFVSMKYGDRIFYPNGMKGR-------RQQWKKDMELFKAWQMGKTGV 348

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           P +DA MR+L   GWM NR R   ASFLVKDLL+DWR+G E+F S LLD D+ SN G W 
Sbjct: 349 PFVDANMRELLATGWMSNRGRQNVASFLVKDLLLDWRLGAEWFESLLLDHDVCSNYGNWN 408

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------ 447
           + A  GND     R FN   Q   +D +G +IR W+PEL  +P   IH+P  W+      
Sbjct: 409 YVAGIGNDPREN-RKFNMIKQSMDYDLEGNYIRMWVPELREIPGSKIHSP--WMLSSGAL 465

Query: 448 --DKNDLSLNYPLPIV 461
              K  L  NYP P+V
Sbjct: 466 SAAKIRLGDNYPNPVV 481


>gi|302790279|ref|XP_002976907.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
 gi|300155385|gb|EFJ22017.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
          Length = 499

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 139/494 (28%), Positives = 231/494 (46%), Gaps = 53/494 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFI 61
            V ++W RNDLRI DN+AL+ A  +S + V+ V+   P  +              ++ F+
Sbjct: 23  GVSIMWFRNDLRIVDNEALFKAWASSSS-VLPVYCVDPRHFGTTHYFKFPKTGELRAQFL 81

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL+ ++K+L ++G+       +           + L   V  +  +  Y   E   ++
Sbjct: 82  LESLVDLKKNLKKRGLDLVIRSGN---------PEFILPLLVEAVGAHTIYAQEETCSEE 132

Query: 122 L-LEKRLQHRVICKSFDDSVLLPPGSILNH-------ALQMYKVYTPFRKALIQNLVQAD 173
           L +EK ++  +  K+    + L  G+ + H         ++  VYT FRKA     V++ 
Sbjct: 133 LQVEKAVKKSIGTKA---KLELVWGTTMYHLNDLPFTTARLPDVYTQFRKA-----VESS 184

Query: 174 LRSLPVPAIRLT-GPVTPS---------NIPRFFDYPFQAIDPM------FPIGEQNALH 217
            R  P   +  T GP+  S          +P   D   +  + +      F  GE  A+ 
Sbjct: 185 SRVRPCLKLPQTLGPLPDSLGEKVGDLDKVPNLSDLGLRPREQVSLAAMQFTGGETAAIQ 244

Query: 218 ILRKF--CKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
            L ++   K  +  Y E R+ +     +++ SP+L+ G +SPR  +     ++       
Sbjct: 245 RLCEYFWTKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIYEEASIKYEKERTAN 304

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            S  +  L ELIWR+++R L   Y +               W++D  L +AW+ G TG+P
Sbjct: 305 NS-TYWVLFELIWRDYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTLFEAWRTGTTGYP 363

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           +IDA MR+L   G+M NR R I  SFLV+D+ +DWR+G E+F S LLD D  SN G W +
Sbjct: 364 LIDANMRELYATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLDYDPCSNYGNWTY 423

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
            A  GND     R F+   Q + +DP G+++ HW+P+L  +PT   H+P     K  + L
Sbjct: 424 GAGVGNDPRED-RYFSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHSPKVGYLKKIVPL 482

Query: 455 NYPLPIVDHKKACH 468
            +  P   +K + +
Sbjct: 483 RFSNPGRTYKTSAN 496


>gi|186686938|ref|YP_001870131.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
 gi|186469290|gb|ACC85090.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
          Length = 516

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 224/476 (47%), Gaps = 38/476 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL+W R DLR+TDN+ + ++  N DA+V+  FI  P  +    +   +  F++ SL ++
Sbjct: 1   MHLLWFRRDLRLTDNEIVTSSSGN-DARVLPFFIIDPWFYTWADVGTARVRFLFESLEKL 59

Query: 69  Q---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLE 124
               + LS +  +F+ +      +    L     +    KLF+NR  ++   + RDK + 
Sbjct: 60  NSNLQKLSSRLYLFEGNSTGIVQELTRQLTERGYK---PKLFFNRDVQVEYGINRDKTIV 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY---TPFRKALIQNLVQADLRSLPVPA 181
              +   +      +  L      +  +  Y  Y   + ++   I N  Q  L +LP   
Sbjct: 117 DFYKQLNLDYHIGLNNFLQSAEQRDEWVNEYYTYQRQSQYKTPAIINTPQITL-NLP--- 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            +LT         RF+     A++ + FP GE  A   L  F K++ Y Y  +   P + 
Sbjct: 173 -QLTFEELKQKYHRFW-----AVEKVYFPGGETQAQAQLDSFLKKRYYGYHWKLSRPMLS 226

Query: 241 ---GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHL 294
               TS LSP+L+ G +S R  +   K     L  +PK+  FS   + + L W + +   
Sbjct: 227 QLGATSHLSPHLTFGTISTRTVYQSTKALAEQLKTQPKA-EFSLKAFRDRLRWHDSFTQR 285

Query: 295 MAFYPSVCMGKPFIP----WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           + F+P +     +      +T +        L QAW+QG TGFP++DA+MRQL T+GWM+
Sbjct: 286 LYFHPEIAYTNRYREFDKLYTPETLSGAKQELYQAWQQGMTGFPLVDASMRQLQTMGWMN 345

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
            R+R + A+FL  +  V W  G +++M+ L+DGDLA +N  WQ  A   N     FRI+N
Sbjct: 346 FRMRAMCATFLTINCGVSWHHGAKHYMNYLVDGDLAIDNWQWQMQAGVTNPLSDTFRIYN 405

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           P+      DP G FI HW+PEL       I       +K   + NYP  I+D  K 
Sbjct: 406 PSKNIAEKDPLGEFIYHWIPELRGYSLLEIEQ-----EKYIETSNYPKVILDWSKT 456


>gi|110825715|sp|Q38JU2|CRYD_SOLLC RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
           AltName: Full=Cryptochrome-3; Flags: Precursor
 gi|98467788|gb|ABB01166.2| cryptochrome 3 [Solanum lycopersicum]
          Length = 577

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 136/472 (28%), Positives = 226/472 (47%), Gaps = 53/472 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFIY 62
           V +VW RNDLR+ DN+AL  A  +S+A ++ V+   P  +            A ++ FI 
Sbjct: 79  VAIVWFRNDLRVLDNEALLRAWVSSEA-ILPVYCVDPRLFGTTHYFGMPKTGALRAQFII 137

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L  ++++L ++G+          D       +Y    +   ++ +++    EV+ +K+
Sbjct: 138 ECLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAY----KAHTVYAHKETCSEEVKVEKM 193

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQ------MY-------------KVYTPFRK 163
           + + LQ  V   S    +   PGS     L+      MY              VYT FRK
Sbjct: 194 VTRNLQKLVSPSS--GGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRK 251

Query: 164 AL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ----AIDPMFPIGEQN 214
           ++     ++N  +      P P +   G     ++P+  +   Q    +    F  GE  
Sbjct: 252 SVEYKSKVRNCTKLPTSFGPPPEVGDWG-----HVPQVSELGLQQEKVSKGMNFVGGESA 306

Query: 215 ALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
           AL  +  +   K+ +  Y E R+ +     +++ SP+L+ G LSPR  +  +K    + L
Sbjct: 307 ALGRVHDYFWKKDLLKVYKETRNGMLGADYSTKFSPWLASGSLSPRFIYEEVKRYEKERL 366

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
                  +  L ELIWR+++R L     ++   +   P    I W++D  +  AW++G T
Sbjct: 367 --SNDSTYWVLFELIWRDYFRFLSIKLANLLF-QAGGPQKVNINWSQDQTMFDAWRRGQT 423

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G 
Sbjct: 424 GYPLIDANMKELAATGYMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGN 483

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           W + A  GND     R F+   Q + +DP+G F+ +WLPEL  +P +  H+P
Sbjct: 484 WTYGAGVGNDPRED-RYFSIPKQAQNYDPEGEFVAYWLPELRALPREKRHSP 534


>gi|38037416|gb|AAR08429.1| cryptochrome 1 [Orobanche minor]
          Length = 679

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 147/494 (29%), Positives = 225/494 (45%), Gaps = 48/494 (9%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-I 61
            T+     +VW R DLR+ DN AL A        V+ +FI  PE+   H    R S + +
Sbjct: 2   GTSGGGCSIVWFRRDLRVEDNPALAAGVRA--GAVLPLFIWAPEE-EGHYYPGRVSRWWL 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRD 120
             SL  +  SL   G      + +   DS+  L          ++F+N  Y+ I+ VR  
Sbjct: 59  KQSLSHLDISLRSLGTSLVTRRST---DSVSSLLEVIKLTGAKQIFFNHLYDPISLVRDH 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           +  E      V  +SF+  +L  P  + +   Q +  +  F +  +      +   LP P
Sbjct: 116 RAKEVLTAEGVAVRSFNADLLYEPWEVHDQEGQPFTTFAGFWERCLSMPYDPEAPLLP-P 174

Query: 181 AIRLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQR 234
              ++G ++   S+   F D   +  + +       G  NA   L  F    +  Y + R
Sbjct: 175 KRIISGDLSRCTSDTLVFEDESEKGSNALLARAWSPGWSNADKALTVFTNGPLLEYSKNR 234

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFS 280
                  TS LSP+L  G +S R+ +              N+  EE ++L +K       
Sbjct: 235 RKADSATTSFLSPHLHFGEVSVRKIFHLARIKQVLWANEGNKAGEESINLFLK------- 287

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
               +  RE+ R+ M+F       +P +   +   W  D    +AW+QG TG+P++DA M
Sbjct: 288 ---SIGLREYSRY-MSFNHPYSHERPLLGHLKYFPWVIDEGYFKAWRQGRTGYPLVDAGM 343

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  
Sbjct: 344 RELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLP 403

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL-- 454
           D     RI NP   G + DP G ++R WLPEL  +PT++IH     P S L    + L  
Sbjct: 404 DGCELDRIDNPQFDGYKCDPNGEYVRRWLPELARLPTEWIHHPWNTPESVLQAAGIELGS 463

Query: 455 NYPLPIV--DHKKA 466
           NYPLPIV  D  KA
Sbjct: 464 NYPLPIVGIDTAKA 477


>gi|78777808|ref|YP_394123.1| deoxyribodipyrimidine photolyase [Sulfurimonas denitrificans DSM
           1251]
 gi|78498348|gb|ABB44888.1| Deoxyribodipyrimidine photo-lyase type I [Sulfurimonas
           denitrificans DSM 1251]
          Length = 445

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 136/480 (28%), Positives = 216/480 (45%), Gaps = 57/480 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L         +V+ +FI      ++     ++  FI+  LL+++ 
Sbjct: 4   VLWFRRDLRVKDNPLLTLG-----GEVLPIFIFDENILKELSQDDKRVTFIFHYLLKLKS 58

Query: 71  SLSQKGIVFQ---------YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            L   G+  +         +   S FD+ +   D                Y+     RD 
Sbjct: 59  DLQHIGLDLKIFYGTPEAVFEHLSKFDEVVASGD----------------YDSYAKSRDL 102

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +  +L  R +     D+ +  P  IL      Y V+TPF K     L   DL+   +  
Sbjct: 103 HISHKLHFRYL----HDTYIFKPKEILKDDGSPYFVFTPFYKKARVALHVKDLQEKKIAQ 158

Query: 182 IRLTGP----VTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKF--CKEKVYYYVEQR 234
             L G     +T  +I         AI+ + F     N +   +K    K+ +  Y + R
Sbjct: 159 NILIGSDYEGITKVDIG--ITKLSLAIESIGFKAQNLNIIAPQKKLENFKKNISKYSQMR 216

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D   +  +S LS  L  G +S R+    +        +K    +  ++ +LI+R+FY + 
Sbjct: 217 DFLDVDISSSLSVDLRFGTISIREVLLEV--------LKLAEVSEPFIRQLIFRDFYAYA 268

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +   P V        +       +D     A+    TG PI+DA +R+L   G+MHNR+R
Sbjct: 269 LFHTPHVESEN----YKYSFNGIEDKEKFIAFCSAKTGVPIVDAGVRELLKTGYMHNRVR 324

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASF  KDLL+ W+ GE +F   LLD D ASN   WQW+A TG D  PYFRIFNP +Q
Sbjct: 325 MVVASFFTKDLLLPWQWGERFFAEHLLDYDKASNVLSWQWSAGTGVDPQPYFRIFNPYLQ 384

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            K+FD +  +I+ ++ EL+ +  + IH    +L   D+  +YP PIV HK+A    +  +
Sbjct: 385 SKKFDKEALYIKRYVSELSTIEIKNIHK-EEYLLCADIK-DYPKPIVTHKEASKRAVELF 442


>gi|3551221|dbj|BAA32809.1| blue-light photoreceptor [Adiantum capillus-veneris]
 gi|3551227|dbj|BAA32812.1| blue-light photoreceptor [Adiantum capillus-veneris]
          Length = 718

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 144/484 (29%), Positives = 231/484 (47%), Gaps = 33/484 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A S  +VW R DLR+ DN AL AA       V+ VFI +P++  Q         ++  SL
Sbjct: 2   AKSCTVVWFRRDLRLEDNPALAAA--ARAGAVVPVFIWSPDEEGQFRPGRVSRWWLKQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124
           +Q+  SL   G+        N +D++  L         +++ YN  Y+ ++ VR  ++ +
Sbjct: 60  IQLDISLRSLGVSLVM---INANDTVSALLELVKTTGASQVVYNHLYDPVSLVRDHRVKQ 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPAIR 183
             +Q+ +  +SF+  +L  P  +L+      K +T F     + L    +  S  +P  R
Sbjct: 117 SLVQNGIQVQSFNGDLLYEPWEVLD---DHGKPFTYFESYWAKCLTMPFEPESPLLPPRR 173

Query: 184 LTGP-------VTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVE 232
           LT         +TP  +    D   ++ + +       G  NA   L  F       Y  
Sbjct: 174 LTAAPAGIVHSLTPDEL-GLEDEADKSSNALLARAWAPGWSNADKALEAFLAGPFLNYSR 232

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWR 288
            R       TS LSP+L  G +S R+ ++ ++   V    D  +  +     ++  + +R
Sbjct: 233 NRHEIDGPTTSLLSPHLHFGEVSVRKVFHSVRRLQVLWAKDGSMLGEESINYFMRSIGFR 292

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+ R+L   +P     +  +   +   W  D  L +AW+QG TG+P++DA MR+L   GW
Sbjct: 293 EYSRYLCFNFP-FTHERSLLSNLKSFPWRVDEGLFKAWRQGRTGYPLVDAGMRELWATGW 351

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           +HNR+R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R+
Sbjct: 352 LHNRVRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRM 411

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462
            NP  +G + DP G ++R WLPEL  +PT++IH    AP   L    + L  NYP P+V+
Sbjct: 412 DNPQTEGYKHDPLGEYVRRWLPELVRLPTEWIHHPWDAPPGVLRAAGVELGSNYPRPVVE 471

Query: 463 HKKA 466
              A
Sbjct: 472 VAAA 475


>gi|294507180|ref|YP_003571238.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
 gi|294343508|emb|CBH24286.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
          Length = 483

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 143/505 (28%), Positives = 219/505 (43%), Gaps = 63/505 (12%)

Query: 7   MSVHLVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHF 60
           +S  LVW+RNDLR+ D+  L YAA H    +VI V+   P  +         +S+ ++ F
Sbjct: 2   LSTALVWIRNDLRVRDHAPLRYAADHYD--QVIPVYCFDPRHFGTTMFDLPKMSSIRARF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  S+  ++ S+   G      +    D     L     Q    ++   ++    E   +
Sbjct: 60  LRESVQDLRDSVQDLGADLVVRRGRPED----ILPELVRQTGANEVLQFQEIGGEEEDVE 115

Query: 121 KLLEKRLQHRVICKSF---------DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
             +E  L+       F         DD     P  I        KVYT FRKA+ +    
Sbjct: 116 TAVEDALRDTGATPGFFWGKTLYHIDDVPFDGPDDIP-------KVYTNFRKAVEKKSTV 168

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ---AIDPM----FPIGEQNALHILRKFCK 224
                 P   + L   + P +IP   +  F     +D      F  GE      + ++  
Sbjct: 169 RPTLDAPDSLLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEYIW 228

Query: 225 EKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
              +   Y   +  +     +++ S +L+ G ++PRQ    + E + D  +  KS    W
Sbjct: 229 RGDFLKKYKATRNGLLGANYSAKFSAWLAHGCITPRQIHEEV-ERYEDQRVDNKS--TYW 285

Query: 282 LN-ELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
           +  ELIWR+F+ ++        F P    G         I+W       + W  G TG P
Sbjct: 286 MKFELIWRDFFSYVTWKAGERLFRPGGINGN-------DIDWRYYDESFERWAAGTTGIP 338

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
            +DA MR+LN  G+M NR R   AS L + L +DWR+G  YF S+L+D D+ASN G W +
Sbjct: 339 FVDANMRELNRTGYMSNRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNWAY 398

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--- 451
            +  GND  P  R FN   Q KR+D  G ++R+WLPEL +VP +Y+H PH    +     
Sbjct: 399 NSRVGND--PRARYFNIVKQAKRYDENGEYVRYWLPELADVPDKYVHEPHRMSHEQQKKY 456

Query: 452 ---LSLNYPLPIVDHKKACHHTLNQ 473
              L  +YP P+VD  K      N+
Sbjct: 457 GCVLGADYPKPVVDLDKTYQRIRNE 481


>gi|313231152|emb|CBY19150.1| unnamed protein product [Oikopleura dioica]
          Length = 251

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 93/247 (37%), Positives = 137/247 (55%), Gaps = 21/247 (8%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GT+++S +L  G +S R+ + R  E F +            + +L++R+FY  + +  P 
Sbjct: 6   GTTKMSAHLKFGTVSIREMYWRTAELFGE--------RHDLIRQLVFRDFYLKIYSHNPE 57

Query: 301 VCMGKPFIPWT-EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +  G        E+I W+ D  L  AW +G TGFP++DAA RQL  IGW HNR+RM+T  
Sbjct: 58  LQRGTALQAGVDERIPWSDDEKLWTAWCEGMTGFPLVDAAQRQLKEIGWQHNRMRMLTGC 117

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRF 418
            L K  ++DWR G ++F   L+D D+ +N  GW W +STG D+VPYFR  FNP IQ K+F
Sbjct: 118 VLTKYFMIDWRKGMKFFYQNLVDADVFNNTAGWGWVSSTGPDAVPYFRPPFNPWIQSKKF 177

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLD--------KNDLSLNYPLPIVDHKKACHHT 470
           D +G +I+ ++PEL +V    +   H W D        KN     YP P+V H +A  + 
Sbjct: 178 DLEGKYIKQYIPELADVSPADL---HKWGDASIRAKYKKNKKVQAYPAPVVKHDEASKNA 234

Query: 471 LNQYYAA 477
           +  Y  A
Sbjct: 235 VYLYKKA 241


>gi|15790677|ref|NP_280501.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
 gi|169236417|ref|YP_001689617.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
 gi|10581208|gb|AAG19981.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
 gi|167727483|emb|CAP14271.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
          Length = 462

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 217/484 (44%), Gaps = 42/484 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL W + DLR+ DN+ L+AA       V+ V++       Q G   R   F+ A +  +
Sbjct: 1   MHLYWHQRDLRVPDNRGLHAATDGD--TVVPVYVFDDTVLSQVGRPKRA--FLAAGVRAL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEKRL 127
           + +  ++G      +     D+   L +   +     +F+   Y+     RR ++ +   
Sbjct: 57  RAAYRERGSDLLVREG----DAESVLPALADEFDADTVFHAAHYDAARRNRRTRVADALA 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V      D  L+ P ++ +      + Y  +++A   +         PVPA     P
Sbjct: 113 AAGVDTAGHVDHTLVDPATLDDAYPSHSQFYDDWQQAPKPD---------PVPA-----P 158

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRD------IPA 238
              +      D+      P  P+   G   A   L  F  + +  Y + RD         
Sbjct: 159 DADALADVHDDHTLSVPAPEPPLPDAGHAAATDRLAAFLDDGIASYNDTRDDLAAAVDAP 218

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S+LSPYL+ G +  R+ W  + + + D           +  EL WRE   HL+   
Sbjct: 219 ASAVSRLSPYLAAGNIGVREVWAAVADAYDDATGNAARNIGKYRYELSWREQNYHLLYHT 278

Query: 299 PSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           P +   + ++ +   I W N D H  +AW +G TG+P++DA MRQL   G++HNR R + 
Sbjct: 279 PRLQT-ENYVSFDAPIAWQNSDDHF-EAWTRGETGYPLVDAGMRQLRAEGYVHNRPRQVV 336

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LLVDWR GE +F  +L+D D A+N   WQW ASTG D+V   RIF+P  Q  +
Sbjct: 337 ASFLTKHLLVDWRRGERHFADRLVDYDPANNAANWQWTASTGTDTVA-VRIFDPVSQMAK 395

Query: 418 FDPQGTFIRHWLPELNNV-PTQYIHAP---HSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           +D    F+  ++PEL  V P   +  P   HS  ++  L+ +Y  PIVD   A       
Sbjct: 396 YDSDAAFVTEYVPELRGVDPETIVDWPTLRHSQRER--LAPDYHHPIVDRDHAYERAQRV 453

Query: 474 YYAA 477
           + AA
Sbjct: 454 FEAA 457


>gi|225010911|ref|ZP_03701378.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C]
 gi|225004958|gb|EEG42913.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C]
          Length = 427

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 204/437 (46%), Gaps = 34/437 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH--GISARQSHFIYASLLQV 68
           +VW  N+LR+ DN  L AAC N+  +V+ V+   PE+       I   ++ F   SLL +
Sbjct: 4   IVWFTNNLRVADNPLLTAACKNNANEVVGVYCLNPEKLDGDFPKIGPFRAKFNVESLLDL 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL +  I F         D  + L  Y  +  +  L++ + +   EV  +K +E ++ 
Sbjct: 64  KRSLEELNIPFAIL----IGDPTKRLPEYINENNIGTLYFQKVWHEEEVLINKEIEAKIS 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   S  D  LL P  I     ++ KV+TPFRK      V+A L  +P P        
Sbjct: 120 PNIQLVSLYDQFLLGPEIIPFELYKLPKVFTPFRKK-----VEATLE-VPAPLEVPAKQT 173

Query: 189 TPSNIPRFFDYPFQA----------IDP--MFPI--GEQNALHILRK--FCKEKVYYYVE 232
             SN P F+     A          ID    FP   GE+ A   +    F  + V  Y E
Sbjct: 174 NTSNTPLFYSDALWASISKELLSIKIDSRSAFPFKGGEKAAQERIDHYFFSTDHVAQYKE 233

Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ +  +  +++LS +L+ G +S R  + +LK    +  +K     +  L EL+WREF+
Sbjct: 234 TRNGLIGLDYSTKLSAWLANGCISARTIYYQLKA--YEKTVKANESTYWVLFELLWREFF 291

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +++   + +       I      + N D  +   W  G T  P I+A M++L+  GWM N
Sbjct: 292 KYVGLKHKNDLFKSGGINHKSFAQGN-DPKVYNDWISGTTHSPFINANMKELSQTGWMSN 350

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R   AS+  K L  DWRIG  YF SQL+D D+ SN   W + +  GND  P  RIFNP
Sbjct: 351 RGRQNVASYWSKTLDQDWRIGATYFESQLIDYDVDSNWANWMYTSGVGND--PRDRIFNP 408

Query: 412 TIQGKRFDPQGTFIRHW 428
             Q   +DPQ  F + W
Sbjct: 409 ERQADMYDPQKAFQKLW 425


>gi|221116996|ref|XP_002166544.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 526

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 150/512 (29%), Positives = 237/512 (46%), Gaps = 60/512 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--------QHG 52
           M   ++    + W+RNDLR+ DN+ L  AC +  + V+ ++   P+ ++        + G
Sbjct: 1   MAGFSSRKTIIYWIRNDLRLHDNECLNFACRDG-SHVLPLYCFDPDHYKLTHHFGFLKTG 59

Query: 53  ISARQSHFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYN 109
           I   ++  I  ++  ++ SL +KG  +V   H+     ++IE L   C Q   VT + + 
Sbjct: 60  I--HRAKLILDAVSGLRNSLQKKGSNLVISKHRPK---EAIEKLILECEQTAPVTSIVFQ 114

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL-------QMYKVYTPFR 162
           ++    E   +  + K      +C S    VL   GS L H         Q+   YT FR
Sbjct: 115 KEITKEETDVEASVFK------VCDSKGIKVLSFWGSTLYHIEDIPFQINQIPNTYTLFR 168

Query: 163 KALIQ------NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA-IDPMFPI--GEQ 213
           K + +      N +   + SLP       G V   N   F    ++  +  +FP    E 
Sbjct: 169 KGVEKCPVRKLNPIPDKISSLPNLKNFPLGEVPLLNELGFDKNEYEIDVRSVFPFNGSEV 228

Query: 214 NALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           +A+  L ++      +  Y E R+ +     +++ SP+L++G LSPR  ++++K+     
Sbjct: 229 DAIKRLNEYLWGNNAILTYKETRNGLLGKDYSTKFSPWLALGSLSPRMIYHKIKDFEEQK 288

Query: 271 LIKPKSGAFSWLNELIWREFYR-----HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
            IK     +  + ELIWR++++     H    +    +     PWT    W +D +L   
Sbjct: 289 KIKENDSTYWVVFELIWRDYFKFICSKHGNKVFFKGGLKGGKGPWT----WKQDLNLFMK 344

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W  G TG P +DA M++L   GWM NR R   ASFLVKDL +DWR+G E+F S L+D D+
Sbjct: 345 WANGDTGIPFVDANMKELLATGWMSNRGRQNVASFLVKDLNLDWRMGAEWFESLLIDSDV 404

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-- 443
            SN G W + A  GND     R FN   Q   +D +G ++R WLP L  +     H P  
Sbjct: 405 CSNYGNWNYIAGIGNDPRSN-RKFNVIKQAADYDEEGDYVRTWLPVLKKLGI--CHTPWR 461

Query: 444 --HSWLDKN--DLSLNYPLPIVDHKKACHHTL 471
              S L+    DL  NYP PI+   +   H L
Sbjct: 462 LSASELNAGGVDLGKNYPHPIIVAPEWAKHAL 493


>gi|166366036|ref|YP_001658309.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
 gi|166088409|dbj|BAG03117.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
          Length = 485

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 144/496 (29%), Positives = 240/496 (48%), Gaps = 53/496 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62
           L+W RNDLR+ D++A+Y A    +   I  F    E  RQ G ++         ++ F+ 
Sbjct: 4   LIWYRNDLRVHDHEAIYQAVQ--EQFEIIPFYCFDE--RQFGFTSYGFPKTGKFRAKFLL 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  +++SL   G      +    +D I  L     + ++ K++Y+++    E+  +K 
Sbjct: 60  ESVADLRQSLESLGGNLIIRRGKP-EDIIPQL---VQELQIAKVYYHQEVTAEELAVEKA 115

Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVP 180
           + K L    V  K+F  + L  P  +     Q+ +++T FRK + ++  ++A   + P P
Sbjct: 116 VNKALSGVPVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIRA---TYPTP 172

Query: 181 AIRLTGP-VTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVY-------YY 230
                 P +   N+P   D       +D    +  Q      +   KE ++       Y 
Sbjct: 173 KKLTKLPKIELGNLPSLNDLGLTESILDRGGVLSFQGGEMAGKSRVKEYIWDSDSLKTYK 232

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             + ++     +S+ S +LS G LSPR  +  + +++    +K  S  +  + EL+WR+F
Sbjct: 233 ETRNEMLGTNYSSKFSAWLSFGCLSPRYIYEEV-QKYEQTRVKNDS-TYWLIFELLWRDF 290

Query: 291 YRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           +R +        FY S  + + ++PW E  +W +       W +G TG+P++DA MR+L 
Sbjct: 291 FRFMCRKHGNKIFYKS-GLQELYLPWLE--DWER----FNLWCEGKTGYPLVDANMRELA 343

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+M NR R   ASFL K+L +DW +G E+F S L+D D+ SN G W + A  GND+  
Sbjct: 344 ATGFMSNRGRQNVASFLSKNLGIDWCMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG 403

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458
            FR FN   Q K +DP+G ++RHWLPEL  +    IH P+    +        L +NYP 
Sbjct: 404 -FRYFNIPKQSKDYDPKGDYLRHWLPELALIKGDKIHEPYKLSPEEQKRYGVILGVNYPR 462

Query: 459 PIVDHKKACHHTLNQY 474
           PIVD  ++  H    Y
Sbjct: 463 PIVDFFQSIKHNEKIY 478


>gi|172058092|ref|YP_001814552.1| DASH family cryptochrome [Exiguobacterium sibiricum 255-15]
 gi|171990613|gb|ACB61535.1| cryptochrome, DASH family [Exiguobacterium sibiricum 255-15]
          Length = 400

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 211/430 (49%), Gaps = 51/430 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ D++AL  AC   +  V AVF+         G   +Q  F   +L  + +
Sbjct: 4   VVWYRKDLRVDDHEALTRACE-EEKIVRAVFVRQT----ADGRGKQQMTFEEETLQSLNE 58

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L Q GI     Q     +++E L S+   + V  ++++R     E R+++ ++KR   R
Sbjct: 59  HLVQLGIELTILQG----ETVEQLTSFIQPEDV--VYFHRMTGEYEARQEQEVQKRFNTR 112

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +    ++   L     I +  L+  +V+T FRK + Q+   A+    P+ A        P
Sbjct: 113 M----YETQTLHLRDDIGSDELK--RVFTAFRKRVEQDGRFAE----PIEA--------P 154

Query: 191 SNIPRFFDYP--FQAIDP--MFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            NI ++ + P      DP   FP   GE    + L  + ++ ++ Y E R+   +  +S+
Sbjct: 155 GNI-QYIELPQTRGGYDPRTAFPFIGGEAAGRNRLAAYLEQPIFTYKETRNGFNVDDSSK 213

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELIWREFYRHLMAFYPS 300
           LS +L+ G LSPR+    L+        + + GA     WL  EL+WR+F+ HL      
Sbjct: 214 LSAWLANGSLSPRRVMAELQR------TEQEHGANESTYWLYFELLWRDFF-HLTMRETG 266

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + +       ++ W  D   + +W  G TG P +DA MR++   GWM NR R ITAS+
Sbjct: 267 HRLFRSNGLKDGRLTWKTDQAAIDSWMAGETGEPFVDAFMREIKDTGWMSNRGRQITASY 326

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFD 419
           L+ DL  DWRIG  YF  QL+D D+ASN G W + A  GN +  P    FNP  Q +++D
Sbjct: 327 LIHDLKQDWRIGARYFEQQLIDYDVASNYGNWAYIAGVGNATRTPR---FNPEFQQQKYD 383

Query: 420 PQGTFIRHWL 429
           P   FIR W+
Sbjct: 384 PNRAFIRRWM 393


>gi|16330358|ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803]
 gi|1652848|dbj|BAA17766.1| DNA photolyase [Synechocystis sp. PCC 6803]
          Length = 453

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/391 (31%), Positives = 199/391 (50%), Gaps = 33/391 (8%)

Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVY 158
           Q     ++Y+R+    E+  ++ L K+L    I  K +  S L  P  +      +  ++
Sbjct: 62  QINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLF 121

Query: 159 TPFRKALIQNLVQ------ADLRSLPVPAIRLTGPVTPSNIPRFF---DYPFQAIDPMFP 209
           T FRK + +  +       A  + LP P I+L     P   P FF   ++  +++   F 
Sbjct: 122 TKFRKDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPP---PEFFPQINFDHRSV-LAFQ 177

Query: 210 IGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
            GE   L  L+ +    +++  Y E R+ +     +S+ SP+L++G LSPR  +  +K  
Sbjct: 178 GGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRY 237

Query: 267 FVDLLIKPKSGAFSWL-NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
             +   +  + +  WL  EL+WR+F+R +   Y +    +  +   +   W +D    + 
Sbjct: 238 EQE---RVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGL-LNKNFPWQEDQVRFEL 293

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W+ G TG+P++DA MR+LN  G+M NR R   ASFL K+L +DWR G E+F S L+D D+
Sbjct: 294 WRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDV 353

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
            SN G W + A  GND+   FR FN   Q +++DPQGT++RHWLPEL N+P   IH P  
Sbjct: 354 CSNWGNWNYTAGIGNDARD-FRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQP-- 410

Query: 446 WLDKN--------DLSLNYPLPIVDHKKACH 468
           WL            L ++YP P V+  ++  
Sbjct: 411 WLLSATEQKQWGVQLGVDYPRPCVNFHQSVE 441


>gi|262041228|ref|ZP_06014439.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041344|gb|EEW42404.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 167

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 113/163 (69%), Gaps = 1/163 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
           L+  VIC+ FDDSVLLPPGS+L    +MYKV+TPF+ A I+ L
Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRL 162


>gi|97047702|sp|Q4KML2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH;
           Short=zCRY-DASH
          Length = 520

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 143/485 (29%), Positives = 226/485 (46%), Gaps = 41/485 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQS 58
           +A    +  LRNDLR+ DN+  + A  N++  +I ++   P  ++             + 
Sbjct: 2   SASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYCFDPRHYQGTYHYNFPKTGPFRL 60

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  S+  ++  L + G      Q    D   E +    L    T  F+       +  
Sbjct: 61  RFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQ--LGSVSTVAFHEEVASEEKSV 118

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            +KL E   Q++V  ++F  S L     +  +H   +  VYT FRKA     V+A  R  
Sbjct: 119 EEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKA-----VEAQGRVR 173

Query: 178 PVPAIRLTGPVTPSN-----IPRFFDY----PFQAIDPMFPI--GEQNALHILRKFC--K 224
           PV +        PS      IP F       P       FP   GE  AL  L+ +    
Sbjct: 174 PVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDT 233

Query: 225 EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-L 282
             V  Y E R+ +  +  +++ SP+L++G +SPR  + ++K+  V+   +  + +  W +
Sbjct: 234 NAVATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVE---RTANQSTYWVI 290

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            EL+WR++++ +   Y +       +   + + WN D  +  AWK+G TG P +DA MR+
Sbjct: 291 FELLWRDYFKFVALKYGNRIFYMNGLQ-DKHVPWNTDMKMFDAWKEGRTGVPFVDANMRE 349

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G+M NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND 
Sbjct: 350 LALTGFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDP 409

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--Y 456
               R FN   QG  +D  G ++R W+PEL  +    +H P    +S L    +SLN  Y
Sbjct: 410 REN-RKFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTY 468

Query: 457 PLPIV 461
           P PI+
Sbjct: 469 PCPII 473


>gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio]
          Length = 520

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 143/485 (29%), Positives = 226/485 (46%), Gaps = 41/485 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQS 58
           +A    +  LRNDLR+ DN+  + A  N++  +I ++   P  ++             + 
Sbjct: 2   SASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYSFDPRHYQGTYHYNFPKTGPFRL 60

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  S+  ++  L + G      Q    D   E +    L    T  F+       +  
Sbjct: 61  RFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQ--LGSVSTVAFHEEVASEEKSV 118

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            +KL E   Q++V  ++F  S L     +  +H   +  VYT FRKA     V+A  R  
Sbjct: 119 EEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKA-----VEAQGRVR 173

Query: 178 PVPAIRLTGPVTPSN-----IPRFFDY----PFQAIDPMFPI--GEQNALHILRKFC--K 224
           PV +        PS      IP F       P       FP   GE  AL  L+ +    
Sbjct: 174 PVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDT 233

Query: 225 EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-L 282
             V  Y E R+ +  +  +++ SP+L++G +SPR  + ++K+  V+   +  + +  W +
Sbjct: 234 NAVATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVE---RTANQSTYWVI 290

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            EL+WR++++ +   Y +       +   + + WN D  +  AWK+G TG P +DA MR+
Sbjct: 291 FELLWRDYFKFVALKYGNRIFYMNGLQ-DKHVPWNTDMKMFDAWKEGRTGVPFVDANMRE 349

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G+M NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND 
Sbjct: 350 LALTGFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDP 409

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--Y 456
               R FN   QG  +D  G ++R W+PEL  +    +H P    +S L    +SLN  Y
Sbjct: 410 REN-RKFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTY 468

Query: 457 PLPIV 461
           P PI+
Sbjct: 469 PCPII 473


>gi|327274302|ref|XP_003221917.1| PREDICTED: cryptochrome DASH-like [Anolis carolinensis]
          Length = 525

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 151/505 (29%), Positives = 241/505 (47%), Gaps = 54/505 (10%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISAR 56
           A++     L  LRNDLR  DN+ L+ A  ++D +++ ++   P  + Q            
Sbjct: 2   ASSLPRTALCLLRNDLRCHDNEVLHWAQSHAD-RIVPLYCFDPRHYAQTYHYNFPKTGPF 60

Query: 57  QSHFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +  F+  S+  ++++L +KG   +V +        D I  L S      V  + ++ +  
Sbjct: 61  RLRFLLESVKDLRETLKKKGSNLVVRKGKPEDVVRDLIIQLGS------VASVSFHEEAT 114

Query: 114 INEVRRDK-LLEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQ 171
             E+  +K L+    +H V  ++F  S L     +   H  Q+  VYT FRKA     V+
Sbjct: 115 KEELDVEKALIRVCTEHGVEVQTFWGSTLYHRQDLPFKHISQLPDVYTQFRKA-----VE 169

Query: 172 ADLRSLPVPAIR-----LTGPVTPSNIPRFFDYPFQA--IDP----MFPIGEQNALHILR 220
           +  R  PV  +      L   +   NIP   D+       DP    +   GE  AL  L+
Sbjct: 170 SQARVRPVLKMEGQMKSLPPEIEEGNIPSLEDFGMTEPLRDPRSAFLCSGGETQALMRLQ 229

Query: 221 KFCKEK--VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
            +  E   V  Y E R+ +  +  +++ +P+L++G +SPR  ++++++   +        
Sbjct: 230 HYFWETNLVASYKETRNGLIGLDYSTKFAPWLALGCISPRYIYDQIQK--YEKERTANQS 287

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIP---WTEKIEWNKDSHLLQAWKQGYTGFP 334
            +  L EL WR+++R +   Y      K F P     + I W KD  L  AWK+G TG P
Sbjct: 288 TYWVLFELAWRDYFRFVALKYGR----KIFFPRGLQDKDISWKKDPKLFDAWKEGRTGVP 343

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
            +DA MR+L T G+M NR R   ASFL KDL +DWR+G E+F S L+D D+ SN G W +
Sbjct: 344 FVDANMRELATTGFMSNRGRQNVASFLTKDLGLDWRMGAEWFESLLVDYDVCSNYGNWLY 403

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKN 450
           +A  GND     R FN   Q   +D  G + R W+PEL  +    +H P    +  L + 
Sbjct: 404 SAGIGNDPREN-RKFNMIKQALDYDGNGDYARLWVPELQCIRGGDVHTPWALSNGALSQA 462

Query: 451 DLSL--NYPLPIVDHKKACHHTLNQ 473
            +SL  +YP+PI+   +   H +NQ
Sbjct: 463 GVSLGSSYPVPIIKAPEWGRH-INQ 486


>gi|16444957|dbj|BAB70686.1| cryptochrome 1a [Oryza sativa Japonica Group]
          Length = 710

 Score =  170 bits (431), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 145/476 (30%), Positives = 227/476 (47%), Gaps = 27/476 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA   +  +V+ V++  PE+   +        ++  SL  +  
Sbjct: 21  VVWFRRDLRVEDNPALAAAARAA-GEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL + G      + S   D++  L         T LF+N  Y+   + RD  ++  L   
Sbjct: 80  SLRRLGASRLVTRRSA--DAVVALIELVRSIGATHLFFNHLYDPLSLVRDHRVKALLTAE 137

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPF--RKALIQNLVQADLRSLPVPAIRLTGP 187
            I  +SF+  +L  P  +++     + ++ PF  R   + +     L    +    L   
Sbjct: 138 GIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPPKRIAPGELPAR 197

Query: 188 VTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             PS+   F D   +  + +       G QNA   L  F    +  Y   R       TS
Sbjct: 198 RCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRKKADSASTS 257

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHLMA 296
            LSPYL  G LS R+ +++++   +  L+    G  +       +L  +  RE+ R+L  
Sbjct: 258 LLSPYLHFGELSVRKVFHQVR---MKQLMWSNEGNHAGDESCVLFLRSIGLREYSRYLTF 314

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P   + KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R++
Sbjct: 315 NHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 373

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G 
Sbjct: 374 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGY 433

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV+   A
Sbjct: 434 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAA 489


>gi|115446841|ref|NP_001047200.1| Os02g0573200 [Oryza sativa Japonica Group]
 gi|46806340|dbj|BAD17529.1| cryptochrome 1a [Oryza sativa Japonica Group]
 gi|113536731|dbj|BAF09114.1| Os02g0573200 [Oryza sativa Japonica Group]
          Length = 718

 Score =  170 bits (430), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 145/476 (30%), Positives = 227/476 (47%), Gaps = 27/476 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA   +  +V+ V++  PE+   +        ++  SL  +  
Sbjct: 21  VVWFRRDLRVEDNPALAAAARAA-GEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL + G      + S   D++  L         T LF+N  Y+   + RD  ++  L   
Sbjct: 80  SLRRLGASRLVTRRSA--DAVVALIELVRSIGATHLFFNHLYDPLSLVRDHRVKALLTAE 137

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPF--RKALIQNLVQADLRSLPVPAIRLTGP 187
            I  +SF+  +L  P  +++     + ++ PF  R   + +     L    +    L   
Sbjct: 138 GIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPPKRIAPGELPAR 197

Query: 188 VTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             PS+   F D   +  + +       G QNA   L  F    +  Y   R       TS
Sbjct: 198 RCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRKKADSASTS 257

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHLMA 296
            LSPYL  G LS R+ +++++   +  L+    G  +       +L  +  RE+ R+L  
Sbjct: 258 LLSPYLHFGELSVRKVFHQVR---MKQLMWSNEGNHAGDESCVLFLRSIGLREYSRYLTF 314

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P   + KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R++
Sbjct: 315 NHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 373

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G 
Sbjct: 374 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGY 433

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV+   A
Sbjct: 434 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAA 489


>gi|226508658|ref|NP_001146707.1| hypothetical protein LOC100280309 [Zea mays]
 gi|219888435|gb|ACL54592.1| unknown [Zea mays]
          Length = 550

 Score =  169 bits (429), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 144/486 (29%), Positives = 227/486 (46%), Gaps = 67/486 (13%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------ISARQS 58
            + V +VW RNDLR+ DN+AL  A   S+A V+ V+   P  +             A ++
Sbjct: 49  GVGVAVVWFRNDLRVIDNEALLRAWAASEA-VLPVYCVDPRVFAGSTHYFGFPKKGALRA 107

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L  +++SL +KG+              E L S         ++ +++    E+ 
Sbjct: 108 QFLIECLGDLKQSLRKKGLDLLVRH----GKPEEILPSIAKAVSAHTIYAHKETCSEELL 163

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ------MY-------------KVYT 159
            ++L+ K L+   I +    SV   P   LN  LQ      MY              VYT
Sbjct: 164 VERLVSKGLEQVQIAQG-GASV---PKRPLNPRLQLIWGATMYHIDDLPFPVSSLPDVYT 219

Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY----PFQAIDPM-------- 207
            FRKA+       +   LP       GP   S+I     +      +++ P         
Sbjct: 220 QFRKAVESKCSVRNCAKLPTS----LGPPPSSSIDEIGGWGTVPTLESLGPSVTKSEKGM 275

Query: 208 -FPIGEQNALHILRKFCKEKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
            F  GE  AL  + ++  +K     Y V +  +     +++ SP+L+ G LSPR     +
Sbjct: 276 HFIGGESAALGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPWLASGSLSPRYICEEV 335

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKI--EWNKD 319
           K      +    +  +  L ELIWR+++R L A Y +    +G P      K+  +W++D
Sbjct: 336 KRYEKQRVANDST--YWVLFELIWRDYFRFLSAKYGNAIFHLGGP-----RKVVSKWSQD 388

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
             L ++W+ G TG+P+IDA MR+L+  G+M NR R I  SFLV+D+ VDWR+G E+F + 
Sbjct: 389 QALFESWRDGRTGYPLIDANMRELSATGYMSNRGRQIVCSFLVRDMGVDWRMGAEWFETC 448

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           LLD D ASN G W + A  GND     R F+   Q K +DP+G ++ +WLPEL ++  + 
Sbjct: 449 LLDYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKSYDPEGEYVAYWLPELRSLAKER 507

Query: 440 IHAPHS 445
            + P +
Sbjct: 508 RNFPGA 513


>gi|161138114|gb|ABX58028.1| cryptochrome 1a [Triticum aestivum]
          Length = 698

 Score =  169 bits (428), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 148/492 (30%), Positives = 236/492 (47%), Gaps = 33/492 (6%)

Query: 1   MKATTAMSVH-------LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI 53
           M A+ +MS         +VW R DLR+ DN AL AA   +  +V+  ++  PE+   +  
Sbjct: 1   MSASPSMSGGAGERTRTVVWFRRDLRVEDNPALAAAARTA-GEVVPAYVWAPEEDGPYYP 59

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
                 ++  SL  +  SL + G      + S   D++  L         T LF+N  Y+
Sbjct: 60  GRVSRWWLSQSLKHLDASLRRLGATRLVTRRST--DTVAALLELVRSTGATHLFFNHLYD 117

Query: 114 INEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              + RD  +++ L    +  +SF+  +L  P  +L+     + ++TPF       L   
Sbjct: 118 PLSLVRDHRVKQVLGAEGITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTC---LCMV 174

Query: 173 DLRSLPVPAIRL-TGPVT---PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCK 224
           D  +  +P  R+ +G ++    S+   F D   +  + +       G QNA      F  
Sbjct: 175 DPPAPMLPPKRINSGELSRCCSSDDLIFEDESERGSNALLARAWSPGWQNADKAFTAFIN 234

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFS 280
             +  Y   R       TS LSPYL  G LS R+ +++++ + +    +     + G   
Sbjct: 235 GPLIDYSVNRKKADSANTSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNGDGEEGCSL 294

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           +L  +  RE+ R+L AF       KP +       W  +    + W+QG TG+P++DA M
Sbjct: 295 FLRSIGLREYSRYL-AFNHPCSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGM 353

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  
Sbjct: 354 RELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLP 413

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL-- 454
           D     RI NP  +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  
Sbjct: 414 DGRELDRIDNPQFEGYKFDPCGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGS 473

Query: 455 NYPLPIVDHKKA 466
           NYPLPIV+  +A
Sbjct: 474 NYPLPIVELDEA 485


>gi|300781310|ref|ZP_07091164.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
           33030]
 gi|300533017|gb|EFK54078.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
           33030]
          Length = 286

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/305 (35%), Positives = 150/305 (49%), Gaps = 50/305 (16%)

Query: 191 SNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKV-YYYVEQRDIPAIQGTSQLS 246
           ++ P  FD PF A++ +      GE  A    R F +      Y +  DIP+   TS LS
Sbjct: 2   TSAPPTFDEPFWAVETLATHCHPGEMQAQRKFRDFLEGLADTSYKDNNDIPSADATSGLS 61

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK- 305
            +L  G +SP Q W      F D      + A+++L +L+WR+F  H + + P++     
Sbjct: 62  AHLRFGEISPAQIWAETAA-FADANHTVAADAWAFLRQLLWRDFAWHRLYYIPTLATRNV 120

Query: 306 ----PFIPWT-----------------EKIEWNKDS--HL--LQAWKQGYTGFPIIDAAM 340
                  PW                  E +  + D   HL  L  W++G TG P++DA M
Sbjct: 121 REQFNAFPWAWTDQPTPGSTTRAFAHPEMVPNDPDEAQHLDELALWQKGETGIPMVDAGM 180

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   G MHNR+RM+  S+L K+L + WR GEE+F   L+D D ASN   WQW A  G+
Sbjct: 181 RELWATGTMHNRVRMVVGSWLTKNLGIHWRHGEEWFWDTLVDADYASNPFNWQWVAGCGD 240

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D+ PYFRIFNP +Q ++FDPQG +I  W+PE         H P            YP P+
Sbjct: 241 DAAPYFRIFNPLLQEEKFDPQGIYINQWVPER--------HTPM-----------YPEPM 281

Query: 461 VDHKK 465
           VD K 
Sbjct: 282 VDVKN 286


>gi|83814331|ref|YP_445305.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
 gi|83755725|gb|ABC43838.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
          Length = 483

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 142/507 (28%), Positives = 222/507 (43%), Gaps = 67/507 (13%)

Query: 7   MSVHLVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHF 60
           +S  LVW+RNDLR+ D+  L YAA H    +VI V+   P  +         +S+ ++ F
Sbjct: 2   LSTALVWIRNDLRVRDHAPLRYAADHYD--QVIPVYCFDPRHFGTTMFDLPKMSSIRARF 59

Query: 61  IYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           +  S+  ++ S+   G  +V +  +  +       L     Q    ++   ++    E  
Sbjct: 60  LRESVQDLRDSVQDLGADLVVRGGRPEDI------LPELVRQTGANEVLQFQEIGGEEED 113

Query: 119 RDKLLEKRLQHRVICKSF---------DDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
            +  +E  L+       F         DD     P  I        KVYT FRKA+ +  
Sbjct: 114 VETAVEDALRDTGATPGFFWGKTLYHIDDVPFDGPDDIP-------KVYTNFRKAVEKKS 166

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ---AIDPM----FPIGEQNALHILRKF 222
                   P   + L   + P +IP   +  F     +D      F  GE      + ++
Sbjct: 167 TVRPTLDAPDSLLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEY 226

Query: 223 CKEKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
                +   Y   +  +     +++ S +L+ G ++PRQ    + E + D  +  KS   
Sbjct: 227 IWRGDFLKKYKATRNGLLGANYSAKFSAWLAHGCITPRQIHEEV-ERYEDQRVDNKS--T 283

Query: 280 SWLN-ELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
            W+  ELIWR+F+ ++        F P    G         I+W       + W  G TG
Sbjct: 284 YWMKFELIWRDFFSYVTWKAGERLFRPGGINGN-------DIDWRYYDKSFERWAAGTTG 336

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
            P +DA MR+LN  G+M NR R   AS L + L +DWR+G  YF S+L+D D+ASN G W
Sbjct: 337 IPFVDANMRELNRTGYMSNRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNW 396

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND- 451
            + +  GND  P  R FN   Q KR+D  G ++R+WLPEL +VP +Y+H P+    +   
Sbjct: 397 AYNSRVGND--PRARYFNIVKQAKRYDENGEYVRYWLPELADVPDKYVHEPNRMSHEQQK 454

Query: 452 -----LSLNYPLPIVDHKKACHHTLNQ 473
                L  +YP P+VD  K      N+
Sbjct: 455 KYGCVLGADYPKPVVDLDKTYQRIRNE 481


>gi|77963974|gb|ABB13328.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
 gi|77963976|gb|ABB13329.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
 gi|77963978|gb|ABB13330.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
          Length = 694

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 147/482 (30%), Positives = 233/482 (48%), Gaps = 25/482 (5%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A +  +VW R DLR+ DN AL AA   +  +V+  ++  PE+   +        ++ 
Sbjct: 11  AGEAATRTVVWFRRDLRVEDNPALAAAARTA-GEVVPAYVWAPEEDGPYYPGRVSRWWLS 69

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL + G      + S   D++  L         T LF+N  Y+   + RD  
Sbjct: 70  QSLKHLDASLRRLGASRLVTRRST--DTVAALLELVRSTGATHLFFNHLYDPLSLVRDHR 127

Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +++ L    I  +SF+  +L  P  +L+     + ++T F     + L   D  +  +P 
Sbjct: 128 VKQVLAAEGISVQSFNSDLLYEPWEVLDDHGSPFTMFTSFWN---KCLCMVDPPAPMLPP 184

Query: 182 IRL-TGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQR 234
            R+ +G +T   S+   F D   +  + +       G QNA      F    +  Y   R
Sbjct: 185 KRINSGDLTRCSSDDLIFEDDSERGSNALLARAWSPGWQNADKAFTAFINGPLIDYSVNR 244

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFSWLNELIWREF 290
                  TS LSPYL  G LS R+ +++++ + +    +     + G   +L  +  RE+
Sbjct: 245 KKADSANTSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNRDGEEGCSLFLRSIGLREY 304

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R+L AF       KP +       W  +    + W+QG TG+P++DA MR+L   GW+H
Sbjct: 305 SRYL-AFNHPCSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLH 363

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           +R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI N
Sbjct: 364 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDN 423

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHK 464
           P  +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV+  
Sbjct: 424 PQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELD 483

Query: 465 KA 466
           +A
Sbjct: 484 EA 485


>gi|290975950|ref|XP_002670704.1| predicted protein [Naegleria gruberi]
 gi|284084266|gb|EFC37960.1| predicted protein [Naegleria gruberi]
          Length = 553

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 155/539 (28%), Positives = 248/539 (46%), Gaps = 95/539 (17%)

Query: 11  LVWLRNDLRITDNKAL-----YAACHNSDAKVIAVFIATPEQWRQHGIS---------AR 56
           L+W RNDLR+ DN++L      A   N++   + V        R  G S         A 
Sbjct: 12  LLWFRNDLRLHDNESLIKTLRLANSSNNNTSKVGVLPLYCFDPRHFGFSRIGKFRKANAN 71

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           ++ F+  S+  ++K+L  +  +    Q  + ++ I  L   C Q  + ++F +++    E
Sbjct: 72  RTRFLTESVDNLRKNLMNEWGLKLMIQIGHPEEIIPHL---CSQYEIEQVFADKEVTSEE 128

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVL-----------LP------------PGSILNHALQ 153
              +++LEK++    +  S+  S++           LP            P  I+   LQ
Sbjct: 129 TSIEQVLEKQIN---VNYSYGFSMVHVEDLPFKIENLPHVFTDFRRKVENPKLIVRPLLQ 185

Query: 154 MYKVYTPFRKALIQ----NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-- 207
           +    +P  K LI     NL+Q +      P +++ G  T   I    +      DP   
Sbjct: 186 L----SPNEKKLISSRVVNLIQDENALGKTPDLKVLG-YTDEEISEMME---NLKDPRSV 237

Query: 208 --FPIGEQNALHILRKF--CKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNR 262
             F  GE  AL  L  +   ++++  Y E R+    +  +S+LSP+LS+G +SPR+ ++ 
Sbjct: 238 LHFKGGEDEALARLNDYLWTQDRLKTYKETRNGLVGEAYSSKLSPWLSLGCISPRKIYHE 297

Query: 263 LKEEFVDLLIKPKSGAFSWL-NELIWREFYRHLMA-FYPSVCMGKPFIPWTEK------- 313
           +K    +   + ++ +  WL  EL+WR+++R     F   + M K     + K       
Sbjct: 298 VKRYEKE---RVENDSTYWLIFELLWRDYFRFFAEKFGNHIFMLKGVTRASSKRKGLIGD 354

Query: 314 ------------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                         W +D  L + W  G TG P +DA MR+L   GWM NR R   ASFL
Sbjct: 355 SSSNKVESKYDETRWKQDLKLFKLWADGKTGLPFVDANMRELKISGWMSNRGRQNVASFL 414

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN-DSVPYFRIFNPTIQGKRFDP 420
            KDL +DWR+G EYF S LLD  + SN G W +AA  G+ D     R FN   QG  +D 
Sbjct: 415 SKDLNLDWRLGAEYFESLLLDHSVTSNWGNWLYAAGVGDVDPRGEARYFNVVKQGFDYDF 474

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
            G F++ W+PEL+ VP + IHAP+   +      K  + ++YP  +V+ K   HH LN+
Sbjct: 475 NGEFVKLWIPELDQVPQRCIHAPYLMSESEQTNAKCTIGVDYPKSLVNVK--AHHHLNE 531


>gi|290510439|ref|ZP_06549809.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55]
 gi|289777155|gb|EFD85153.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55]
          Length = 160

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 113/161 (70%), Gaps = 1/161 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIVSHLH 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHTALAERGIPLWVEEADDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
           L+  VIC+ FDDSVLLPPGS++  + +MYKV+TPF+ A I+
Sbjct: 121 LR-DVICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIR 160


>gi|32477278|ref|NP_870272.1| DNA photolyase [Rhodopirellula baltica SH 1]
 gi|32447829|emb|CAD77347.1| DNA photolyase [Rhodopirellula baltica SH 1]
          Length = 526

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 231/503 (45%), Gaps = 44/503 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFI 61
           M+  LVW RNDLR  D++    A  ++  +  AV    P Q+    +  +++      F+
Sbjct: 39  MANALVWFRNDLRTIDHEPFLRA--STADRCFAVHCIDPRQFETTELGFQRTGPFRARFL 96

Query: 62  YASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
             +L  ++  L   G  ++ +  +          L        +  + ++ +    E   
Sbjct: 97  IENLTDLRSRLRSLGGELIVRVGRPETV------LQHLLPSLAIDAVHFHHEPRTEEADT 150

Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
            + +++   QH +         L+ P  +        +++T FRK + +   Q + RS  
Sbjct: 151 AESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEK---QCEARSPL 207

Query: 179 VPAIRLTG----PVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFC--KE 225
              IR+ G     V   +IP        +  P+       F  G+  A   + ++   ++
Sbjct: 208 EEPIRIHGTLPEEVNAGDIPTLESLGL-STPPLDDRCLNQFTGGQNAAQQRMEEYIWNED 266

Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           ++  Y E R+ +     +S+ SP+L+ G LSPR   + ++  + +  +K KS  +  + E
Sbjct: 267 RLRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRR-YEEERVKNKS-TYWMIFE 324

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WR+++R +   + +       +     ++W  D  L + W+ G TG+P++DA MR+L 
Sbjct: 325 LLWRDYFRWISRKHGATLFRAGGLRGV-NVDWKSDRELFRRWQDGTTGYPLVDANMRELR 383

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
           T G+M NR R   ASFL K+L +DWR G  +F SQL+D D+ASN G W +AA  GND+  
Sbjct: 384 TTGYMSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG 443

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458
            FR FN T Q + +D QG + +HWLPEL ++    IH P     +        L   YP 
Sbjct: 444 -FRFFNITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPH 502

Query: 459 PIVDHKKACHHTLNQYYAAKKQS 481
           PIVD   +       Y  AK  S
Sbjct: 503 PIVDLFDSAKENETIYMRAKAAS 525


>gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina]
          Length = 600

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 149/509 (29%), Positives = 228/509 (44%), Gaps = 61/509 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQSHFIYASLLQV 68
           ++W R  LR+ DN AL  AC  S A V  +FI  P   Q   + +   +  F+  SL  +
Sbjct: 52  ILWFRKGLRLHDNPALRDACTGS-AAVFPIFIIDPYFLQKSNNKVGVNRYQFLLESLSDL 110

Query: 69  QKSLSQKG---IVFQYHQCSNFDDSI-EW-LDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
             SL+  G   +V +          + +W +   C +         R   ++++ R+  +
Sbjct: 111 NSSLTSLGSQLLVLRGTPEEVIPRVLRDWSIKKLCYEIDTEPYAKARDARVDDMAREAGV 170

Query: 124 E--KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLP 178
           E  K   H +    +D  +L+          +  K   P      + LV      L +LP
Sbjct: 171 EVKKHWSHTL----YDTDMLV----------RENKGKAPLTMQAFEKLVDRVGHPLTALP 216

Query: 179 VPAIRLTGPVTPS---------NIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVY 228
            P  RL  PV  S          +P + +  F +A   +F  GE  AL  L  + K+  +
Sbjct: 217 APTARLP-PVDVSLPGIKDAEVGVPTWQEMGFKEAPTAIFKGGETEALKRLEHYMKDTKW 275

Query: 229 YYVEQR---DIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
               ++   D  A     T+ LSPYL  G LS R    RL + +  L  K      S   
Sbjct: 276 XASFEKPSTDPSAFTEPSTTALSPYLKFGCLSARFFHQRLLDVY-RLHPKHSQPPMSLRG 334

Query: 284 ELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           +L+WREF+  L +  P+     G P      +I W+ +  LL+AW+ G TG+P IDAAM 
Sbjct: 335 QLLWREFFYTLGSHTPNFDRIAGNPIC---RQITWDTNPALLKAWRDGATGYPWIDAAMT 391

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GWMH+  R   A FL + DL + W  G+E F   LLD D   N   W W +++  
Sbjct: 392 QLREWGWMHHLARHSVACFLTRGDLYLSWESGKEVFEELLLDADYFINAANWMWLSASAF 451

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------L 452
               YFR+++P + GK++D +G +IR +LP L ++P +YI+ P  W    +        +
Sbjct: 452 -FAQYFRVYSPVVFGKKYDKEGAYIRKFLPVLKDMPAKYIYEP--WTAPKEVQQRANCII 508

Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
             +YP PIVDH  A    + +  AA K +
Sbjct: 509 GRDYPAPIVDHAVASKECIARMGAAYKAT 537


>gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
 gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
          Length = 1646

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 93/263 (35%), Positives = 134/263 (50%), Gaps = 32/263 (12%)

Query: 239  IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            I  T+ LSPY+  G +SPR  ++ L   + +L  K      S + +L+WREFY  + A  
Sbjct: 1384 IPSTTALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWREFYYLVAAGT 1443

Query: 299  P--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
                     ++C          +I W KD  L  AW+   TGFP IDAAM QL   GW+H
Sbjct: 1444 KNFDKMEGNAIC---------RQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLH 1494

Query: 351  NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            +  R   A FL + DL + W  G + F   L+D D A NNG W W + +      YFR++
Sbjct: 1495 HLARHAVACFLTRGDLFIHWEWGRDAFDRDLVDADWALNNGNWMWLSCSAF-FYQYFRVY 1553

Query: 410  NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS--------LNYPLPIV 461
            +P    K++D  G ++RH+LP L N+P++Y++ P  WL   D+         ++YP PIV
Sbjct: 1554 SPIAFAKKYDKDGQYVRHYLPVLKNMPSKYVYEP--WLAPLDVQKKAGCVVGVDYPAPIV 1611

Query: 462  DHKKA---CHHTLNQYYAAKKQS 481
            DH  A   C   +   YAA K +
Sbjct: 1612 DHSAASKRCVDDIATAYAAHKDA 1634


>gi|97047983|sp|Q7UJB1|CRYD_RHOBA RecName: Full=Cryptochrome DASH
          Length = 488

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 231/503 (45%), Gaps = 44/503 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFI 61
           M+  LVW RNDLR  D++    A  ++  +  AV    P Q+    +  +++      F+
Sbjct: 1   MANALVWFRNDLRTIDHEPFLRA--STADRCFAVHCIDPRQFETTELGFQRTGPFRARFL 58

Query: 62  YASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
             +L  ++  L   G  ++ +  +          L        +  + ++ +    E   
Sbjct: 59  IENLTDLRSRLRSLGGELIVRVGRPETV------LQHLLPSLAIDAVHFHHEPRTEEADT 112

Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
            + +++   QH +         L+ P  +        +++T FRK + +   Q + RS  
Sbjct: 113 AESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEK---QCEARSPL 169

Query: 179 VPAIRLTG----PVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFC--KE 225
              IR+ G     V   +IP        +  P+       F  G+  A   + ++   ++
Sbjct: 170 EEPIRIHGTLPEEVNAGDIPTLESLGL-STPPLDDRCLNQFTGGQNAAQQRMEEYIWNED 228

Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           ++  Y E R+ +     +S+ SP+L+ G LSPR   + ++  + +  +K KS  +  + E
Sbjct: 229 RLRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRR-YEEERVKNKS-TYWMIFE 286

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WR+++R +   + +       +     ++W  D  L + W+ G TG+P++DA MR+L 
Sbjct: 287 LLWRDYFRWISRKHGATLFRAGGLRGV-NVDWKSDRELFRRWQDGTTGYPLVDANMRELR 345

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
           T G+M NR R   ASFL K+L +DWR G  +F SQL+D D+ASN G W +AA  GND+  
Sbjct: 346 TTGYMSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG 405

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458
            FR FN T Q + +D QG + +HWLPEL ++    IH P     +        L   YP 
Sbjct: 406 -FRFFNITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPH 464

Query: 459 PIVDHKKACHHTLNQYYAAKKQS 481
           PIVD   +       Y  AK  S
Sbjct: 465 PIVDLFDSAKENETIYMRAKAAS 487


>gi|302797733|ref|XP_002980627.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
 gi|300151633|gb|EFJ18278.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
          Length = 499

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 141/497 (28%), Positives = 232/497 (46%), Gaps = 59/497 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFI 61
            V ++W RNDLRI DN+AL+ A  +S + V+ V+   P  +              ++ F+
Sbjct: 23  GVSIMWFRNDLRIVDNEALFKAWASSSS-VLPVYCVDPRHFGTTHYFKFPKTGELRAQFL 81

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL+ ++K+L ++G+       +           + L   V  +  +  Y   E   ++
Sbjct: 82  LESLVDLKKNLKKRGLDLVIRSGN---------PEFILPSLVEAVGADTIYAQEETCSEE 132

Query: 122 L-LEKRLQHRVICKSFDDSVLLPPGSILNH-------ALQMYKVYTPFRKALIQNLVQAD 173
           L +EK ++  +  K+    + L  G+ + H         ++  VYT FRKA     V++ 
Sbjct: 133 LQVEKAVKKSIGTKA---KLELVWGTTMYHLNDLPFTTARLPDVYTQFRKA-----VESS 184

Query: 174 LRSLPVPAIRLT-GPVTPS------NIPRFFDYPFQAIDP---------MFPIGEQNALH 217
            R  P   +  T GP+  S      ++ +  +     + P          F  GE  A+ 
Sbjct: 185 SRVRPCLKLPQTLGPLPDSLGEKVGDLDKVPNLSHLGLRPREQSSLAAMQFAGGETAAIQ 244

Query: 218 ILRKF--CKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
            L ++   K  +  Y E R+ +     +++ SP+L+ G +SPR     + EE      K 
Sbjct: 245 RLCEYFWTKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPR----FIHEEASIKYEKE 300

Query: 275 KSGAFS--W-LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
           ++   S  W L ELIWR+++R L   Y +               W++D  L +AW+ G T
Sbjct: 301 RTANNSTYWVLFELIWRDYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTLFEAWRTGTT 360

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F S LLD D  SN G 
Sbjct: 361 GYPLIDANMKELYATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLDYDPCSNYGN 420

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           W + A  GND     R F+   Q + +DP G+++ HW+P+L  +PT   H P     K  
Sbjct: 421 WTYGAGVGNDPRED-RYFSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHFPKVGYLKKI 479

Query: 452 LSLNYPLPIVDHKKACH 468
           + L +  P    K + +
Sbjct: 480 VPLRFSNPGRTSKTSAN 496


>gi|209524800|ref|ZP_03273346.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
 gi|209494679|gb|EDZ94988.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
          Length = 486

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 242/500 (48%), Gaps = 73/500 (14%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           ++W R+DLR+ D++ L  A  ++ A++I ++   P Q+ +       +   +  F+  S+
Sbjct: 9   ILWYRHDLRLHDHEPLDLAT-STQAQIIPLYCFDPRQFAKTSFGFPKMGGFRGKFLLESV 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL----QQRVTKLFYNRQYEINEVRRDK 121
             ++ +L + G        SN    I   ++       Q  +  ++Y+++    E+  ++
Sbjct: 68  ADLRHNLQKIG--------SNLLVRIGEPETVIFDLVKQLNIDAVYYHKEVTTEELAVER 119

Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            LEK L    V  KSF  + L  P  +     ++ +++T FRK       Q + +S+  P
Sbjct: 120 ALEKALTPLGVEVKSFWGATLYHPKELPFPIEKLPELFTNFRK-------QVEKKSIIYP 172

Query: 181 AIRLTGP--------VTPSNIPRFFDY-----PFQAIDPM-FPIGEQNALHILRKFC--K 224
               T P        + P  IP   +      PF +   + F  GE   L  L  +   +
Sbjct: 173 P--YTPPKQLPTFPDIEPGEIPTLAELGITKLPFDSRAVLDFVGGETAGLTRLNDYFWQR 230

Query: 225 EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           + +  Y + R+ +     +S+ SP+L+ G LSPR  + ++ +       + K+ +  WL 
Sbjct: 231 DCLKNYKQTRNGMLGSDYSSKFSPWLANGCLSPRWIYQQVCDYEQQ---RVKNDSTYWLV 287

Query: 284 -ELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
            EL+WR+++R +        FY S   G        KI W ++    Q+W  G TGFP++
Sbjct: 288 FELLWRDYFRFICLKHGRKVFYKSGLQGV-------KIPWGENWQQFQSWCDGLTGFPLV 340

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DA MR+L   G+M NR R   ASFL K+L ++W++G E+F S L+D D+ SN G W + A
Sbjct: 341 DANMRELAATGFMSNRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTA 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND----- 451
             GND    FR FN   Q + +DP G +++HWLPEL ++P   +H+P  W   N      
Sbjct: 401 GVGNDGRG-FRYFNIAKQSQDYDPMGDYVKHWLPELASIPHGKVHSP--WRLSNQEQIRF 457

Query: 452 ---LSLNYPLPIVDHKKACH 468
              L ++YP P+VD +++  
Sbjct: 458 GMRLGVDYPYPMVDLQRSVE 477


>gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio]
 gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio]
          Length = 520

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 142/485 (29%), Positives = 225/485 (46%), Gaps = 41/485 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQS 58
           +A    +  LRNDLR+ DN+  + A  N++  +I ++   P  ++             + 
Sbjct: 2   SASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYCFDPRHYQGTYHYNFPKTGPFRL 60

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  S+  ++  L + G      Q    D   E +    L    T  F+       +  
Sbjct: 61  RFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQ--LGSVSTVAFHEEVASEEKSV 118

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            +KL E   Q++V  ++F  S L     +  +H   +  VYT FRKA     V+A  R  
Sbjct: 119 EEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKA-----VEAQGRVR 173

Query: 178 PVPAIRLTGPVTPSN-----IPRFFDY----PFQAIDPMFPI--GEQNALHILRKFC--K 224
           PV +        PS      IP F       P       FP   GE  AL  L+ +    
Sbjct: 174 PVLSTPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDT 233

Query: 225 EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-L 282
             V  Y E R+ +  +  +++ SP+L++G +SPR  + ++K+  V+   +  + +  W +
Sbjct: 234 NAVATYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVE---RTANQSTYWVI 290

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            EL+WR++++ +   Y +       +   + + W  D  +  AWK+G TG P +DA MR+
Sbjct: 291 FELLWRDYFKFVALKYGNRIFYMNGLQ-DKHVPWKTDMKMFDAWKEGRTGVPFVDANMRE 349

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G+M NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND 
Sbjct: 350 LALTGFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDP 409

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--Y 456
               R FN   QG  +D  G ++R W+PEL  +    +H P    +S L    +SLN  Y
Sbjct: 410 REN-RKFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTY 468

Query: 457 PLPIV 461
           P PI+
Sbjct: 469 PCPII 473


>gi|125590574|gb|EAZ30924.1| hypothetical protein OsJ_15004 [Oryza sativa Japonica Group]
          Length = 697

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 145/472 (30%), Positives = 221/472 (46%), Gaps = 42/472 (8%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLR+ DN AL AA      +V+  ++  PE+   +        ++  SL  +  SL + G
Sbjct: 24  DLRVEDNPALAAAARAG-GEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDASLRRLG 82

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICKS 135
                 + S   D++  L         T+LF+N  Y+ I+ VR  +L E      +I +S
Sbjct: 83  AGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGIIVQS 140

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT--PSNI 193
           F+  +L  P  +++   Q + ++ PF    +          LP   I  +G ++  PS+ 
Sbjct: 141 FNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRIN-SGDLSMCPSDD 199

Query: 194 PRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             F D   +  + +       G QNA   L  F    + +Y   R       TS LSPYL
Sbjct: 200 LIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLSPYL 259

Query: 250 SIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
             G LS R+ +              NR  EE   L ++           +  RE+ R+L 
Sbjct: 260 HFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR----------SIGLREYSRYLS 309

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R+
Sbjct: 310 FNHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRV 368

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G
Sbjct: 369 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEG 428

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461
            +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV
Sbjct: 429 YKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIV 480


>gi|288575582|ref|ZP_05977252.2| deoxyribodipyrimidine photolyase [Neisseria mucosa ATCC 25996]
 gi|288567636|gb|EFC89196.1| deoxyribodipyrimidine photolyase [Neisseria mucosa ATCC 25996]
          Length = 481

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/466 (29%), Positives = 210/466 (45%), Gaps = 50/466 (10%)

Query: 6   AMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           AM  H LVW R +LRI DN AL AA       V  V++A      ++    RQ  F Y +
Sbjct: 54  AMQAHTLVWFRRNLRIRDNAALSAAVKRG-LPVAGVWVAKGSSEIRN---PRQDWFHYQA 109

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
              +  SL+ +G+           + +E L ++  +  V  +  +  Y  +E+ +D  + 
Sbjct: 110 AAALHGSLAARGVALYAV------NRVEELPAFAARLNVQTVIADEAYTSSEIGQDNRIW 163

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRSL 177
           + L  + +  +  +D  +     I+      Y  +  +++A +    Q      AD R  
Sbjct: 164 RILDEKGVAFERVNDRAVFAKADIMGSHGAPYTDFPHYKEAWLALFRQRFGGQDADCRQT 223

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            +         T + +P F  +  Q  I      GE  A    R+F +E + +Y   +D 
Sbjct: 224 EI------FQTTSAEMPPFPAWNGQQNIVSAQRGGEDEADKQWRQF-EENIGFYPIMKDF 276

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA +GTS+LS YLS G +SPR          V  +     GA +WL+ LI R+FY+ L  
Sbjct: 277 PARKGTSRLSAYLSAGCISPR----------VLAVEAAGQGADAWLDNLIRRDFYQQLAY 326

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
               +       P T+ +       L + W+QG TGFP+IDAAMR L + GW+H  LR +
Sbjct: 327 HRARIE------PETDALSTTFSDDLTERWRQGETGFPLIDAAMRSLKSSGWLHPALRSL 380

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TA FL   L      G  +F +Q  D D A N G WQ AA          R  +     +
Sbjct: 381 TAEFLCGILHQPSEPGIAWFAAQQTDFDPALNEGNWQTAARNARR-----RSIDIIQTAR 435

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIV 461
           R DP GTF+R  +PEL ++P   +H P  WL  +++    YP P++
Sbjct: 436 RLDPDGTFVRRHIPELAHLPANLVHTP--WLASSEIDAHGYPSPVI 479


>gi|168067358|ref|XP_001785586.1| photolyase-like protein [Physcomitrella patens subsp. patens]
 gi|162662787|gb|EDQ49598.1| photolyase-like protein [Physcomitrella patens subsp. patens]
          Length = 557

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 140/486 (28%), Positives = 222/486 (45%), Gaps = 67/486 (13%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GIS 54
           M +     + +VW RNDLRI+DN+AL  A  +S A V+ +++  P  + Q          
Sbjct: 57  MTSRKGTGIAIVWFRNDLRISDNEALLKAWQSSQA-VVPLYVVDPRLYGQTYHFGFPKTG 115

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD------DSIEWLDSY-----CLQQRV 103
             ++ FI  S+  ++ +L Q+G+     Q    D       SI     Y     C ++  
Sbjct: 116 ELRAQFIMESVANLRDNLRQRGLDLIVRQGKPEDVVPSIAKSIGAHTVYAHKETCSEETT 175

Query: 104 TKLFYNRQYEINE------VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
            +    R     E      +R D +    L H       DD    P         ++  V
Sbjct: 176 VETGVKRGLANLEGGPKMQIRLDFVWGGTLYH------LDDLPFSPS--------ELPDV 221

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS---NIPRFFDYP--------FQAIDP 206
           YT FRK +  N        +P       GP+  S    I    D P        ++   P
Sbjct: 222 YTQFRKGVEYNCKVRPALKMPTQ----MGPLPESLSEKIGELGDIPTMAELGLKYREQSP 277

Query: 207 M----FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQC 259
           +    F  GE  AL  L+ +   K+++  Y E R+ +     +++ SP+L+ G LSPR  
Sbjct: 278 LGVMHFEGGETAALARLQDYFWNKDQLKIYKETRNGMLGANYSTKFSPWLAHGCLSPRTI 337

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWN 317
            + +K    + +    +  +  L ELIWR+++R +   Y +    +G P     ++  W+
Sbjct: 338 HDEVKRYETERVANDST--YWVLFELIWRDYFRFVSIKYGNAIFHLGGPRKVVGKR--WS 393

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
           ++  L +AW++G TG+P+IDA M++L   G+M NR R I  SFLV+DL +DWR+G E+F 
Sbjct: 394 QNRELFEAWREGRTGYPLIDANMKELAATGFMSNRGRQIVCSFLVRDLGLDWRMGGEWFE 453

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
           + LLD D  SN G W + A  GND     R F+   Q   +DP+G ++ HWLP L   P 
Sbjct: 454 TCLLDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQSATYDPEGEYVAHWLPSLKQSPP 512

Query: 438 QYIHAP 443
           +  + P
Sbjct: 513 KQRNFP 518


>gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis]
 gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis]
          Length = 576

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 137/477 (28%), Positives = 227/477 (47%), Gaps = 33/477 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSH 59
              + +VW RNDLRI DN++L  A  +SD+ ++ V+   P  +            A ++ 
Sbjct: 81  GKGICIVWFRNDLRILDNESLLQAWLSSDS-LLPVYCVDPRLFHTTHHFAFPKTGALRAQ 139

Query: 60  FIYASLLQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           F+   L  ++ +L ++G+ +F  H         + L S         ++  ++    E+ 
Sbjct: 140 FLIECLADLKNNLMKRGLNLFIRH-----GKPEDILPSLARAFSAHTVYAQKETCSEELI 194

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPP-----GSILNH-------ALQMYKVYTPFRKALI 166
            ++L+ K LQ   +  S D     P      GS + H       A  +  VYT F K +I
Sbjct: 195 VERLVSKALQRVNLPPSPDKFTSQPKLQLVWGSTMYHIDDLPFNANNIPDVYTQFPKCVI 254

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFC-- 223
           +  ++  +   P P +   G V   +         + I  M F  GE  AL  + ++   
Sbjct: 255 RGCLKIPVTLAPSPPVDDWGCVPSLDQLGLQPQKARFIKGMRFLGGETAALSRVYEYFWK 314

Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           K+ +  Y E R+ +     +++ SP+L+ G LSPR  +  +K    +   +     +  L
Sbjct: 315 KDLLKIYKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEDVKR--YENERQANDSTYWVL 372

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            ELIWR+++R L   Y +       +   E+  W++D  L ++WK G TG+P+IDA M++
Sbjct: 373 FELIWRDYFRFLSVKYGNSLFHLGGVRKVER-SWSQDQKLFESWKDGCTGYPLIDANMKE 431

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L+T G+M NR R I  SFLV+D+ VDWR+G E+F + LLD D  SN G W + A  GND 
Sbjct: 432 LSTTGFMSNRGRQIVCSFLVRDMGVDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDP 491

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
               R F+   Q + +DP+G ++ +WLP+L  +     H P     +  + L Y  P
Sbjct: 492 RED-RYFSIPKQAQIYDPEGEYVAYWLPQLQKLEKDRRHFPGKSYIEQIVPLKYGNP 547


>gi|161138112|gb|ABX58027.1| cryptochrome 1a [Triticum aestivum]
          Length = 700

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 143/475 (30%), Positives = 229/475 (48%), Gaps = 26/475 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA   +  +V+  ++  P++   +        ++  SL  +  
Sbjct: 20  VVWFRRDLRVEDNPALAAAARTA-GEVVPAYVWAPKEDGPYYPGRVSRWWLSQSLKHLDA 78

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL + G      + S   D++  L         T LF+N  Y+   + RD  +++ L   
Sbjct: 79  SLRRLGATRLVTRRST--DTVAALLELVRSTGATHLFFNHLYDPLSLVRDHRVKQVLGAE 136

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-TGPV 188
            +  +SF+  +L  P  +L+     + ++TPF       L   D  +  +P  R+ +G +
Sbjct: 137 GITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTC---LCMVDPPAPMLPPKRINSGEL 193

Query: 189 T---PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +    S+   F D   +  + +       G QNA      F    +  Y   R       
Sbjct: 194 SRCCSSDDLIFEDESERGSNALLARAWSPGWQNADKAFTAFINGPLIDYSVNRKKADSAN 253

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFSWLNELIWREFYRHLMAF 297
           TS LSPYL  G LS R+ +++++ + +    +     + G   +L  +  RE+ R L AF
Sbjct: 254 TSLLSPYLHFGELSVRKVFHQIRMKQLTWSNESNGDGEEGCSLFLRSIGLREYSRRL-AF 312

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                  KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R++ 
Sbjct: 313 NHPCSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 372

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP  +G +
Sbjct: 373 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYK 432

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV+  +A
Sbjct: 433 FDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLRAAGIELGSNYPLPIVELDEA 487


>gi|284052713|ref|ZP_06382923.1| DNA photolyase [Arthrospira platensis str. Paraca]
 gi|291567701|dbj|BAI89973.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
          Length = 490

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 136/495 (27%), Positives = 233/495 (47%), Gaps = 37/495 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69
           ++W RNDLR+ D++ L  A  ++  ++I ++   P Q+ +      +   F    LL+  
Sbjct: 9   ILWYRNDLRLHDHEPLDLAT-STQGQIIPLYCFDPRQFAKTSFGFPKTGGFRGKFLLESV 67

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L         +      +    +     Q  +  ++Y+++    E+  +  LEK L  
Sbjct: 68  ADLRHNFQKIGSNLLVRIGEPERVIFDLVKQLNIDAVYYHKEVTAEELAVETALEKALTP 127

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V  KSF  + L     +     ++ +++T FRK + Q  V     + P    +    +
Sbjct: 128 LGVEVKSFWGATLYHLKELPFPIEKLPELFTNFRKQVEQKSVIYPPYTPPNQLPQFPD-I 186

Query: 189 TPSNIPRFFDY-----PFQAIDPM-FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAI 239
            P  IP   +      PF     + F  GE   L  L  +   ++ +  Y + R+ +   
Sbjct: 187 EPGEIPTLTELGITPAPFDERSVLDFAGGETAGLSRLNDYFWRRDCLKNYKQTRNGMLGS 246

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYRHLM--- 295
             +S+ SP+L+ G LSPR  + ++++       + K+ +  WL  EL+WR+++R +    
Sbjct: 247 DYSSKFSPWLANGCLSPRWIYQQVQDYQHQ---RVKNDSTYWLVFELLWRDYFRFICLKH 303

Query: 296 ---AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
               FY S   G        KI W ++    Q W QG TGFP++DA MR+L   G+M NR
Sbjct: 304 GPKVFYKSGLQGV-------KIPWGENWEQWQIWCQGLTGFPLVDANMRELAATGFMSNR 356

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASFL K+L ++W++G E+F S L+D D+ SN G W + A  GND    FR FN  
Sbjct: 357 GRQNVASFLTKNLGINWQMGAEWFESVLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFNIA 415

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
            Q + +DP G +++HWLPEL ++P   +H+P    ++        L ++YP P+VD +++
Sbjct: 416 KQSQDYDPMGDYVKHWLPELASIPDGRVHSPWRLSNQEQIRFGVRLGVDYPYPMVDLQES 475

Query: 467 CHHTLNQYYAAKKQS 481
                  Y  A + +
Sbjct: 476 VEANRRIYEKALRMT 490


>gi|327541206|gb|EGF27750.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
          Length = 488

 Score =  166 bits (421), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 229/506 (45%), Gaps = 50/506 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFI 61
           M+  LVW RNDLR  D++    A  ++  +  AV    P Q+    +  +++      F+
Sbjct: 1   MANALVWYRNDLRTIDHEPFLRA--STADRCFAVHCIDPRQFETTELGFQRTGPFRARFL 58

Query: 62  YASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
             SL  ++  L   G  ++ +  +          L        +  + ++ +    E   
Sbjct: 59  IESLTDLRSRLRSLGGELIVRVGRPETV------LQHLLPSLAIDAVHFHHEPGTEEADT 112

Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
            + +++   QH +         L+ P  +         ++T FRK + +   Q + RS  
Sbjct: 113 AESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPGLFTDFRKEIEK---QCEARSPL 169

Query: 179 VPAIRLTGP----VTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFC--KE 225
              IR+ G     V   +IP        +  P+       F  G+  A   + ++   ++
Sbjct: 170 EEPIRIQGALPEEVNAGDIPTLESLGL-STPPLDDRCLNQFTGGQNAAQQRMEEYIWNED 228

Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK---EEFVDLLIKPKSGAFSW 281
           ++  Y E R+ +     +S+ SP+L+ G LSPR   + ++   EE V+         +  
Sbjct: 229 RLRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRCYEEERVE-----NKSTYWM 283

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + EL+WR+++R +   +  V + +        ++W  D  L + W+ G TG+P++DA MR
Sbjct: 284 IFELLWRDYFRWISRKH-GVTLFRTSGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMR 342

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L T G+M NR R   ASFL K+L +DWR G  +F SQL+D D+ASN G W +AA  GND
Sbjct: 343 ELRTTGYMSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGND 402

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLN 455
           +   FR FN T Q + +D QG + +HWLPEL ++    IH P     +        L   
Sbjct: 403 ARG-FRFFNITKQSRDYDSQGEYAKHWLPELRDLDGTEIHEPWKMSPERQQEVGVTLGKE 461

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQS 481
           YP PIVD   +       Y  AK  S
Sbjct: 462 YPHPIVDLFDSAKENETTYMRAKAAS 487


>gi|23506659|gb|AAN37909.1| cryptochrome 2 apoprotein [Sorghum bicolor]
          Length = 691

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 145/479 (30%), Positives = 231/479 (48%), Gaps = 34/479 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA      +V+  ++ +PE+   +        +I  SL  +  
Sbjct: 19  VVWFRRDLRVEDNPALAAAARAG-GEVVPAYVWSPEEEGPYYPGRVSRWWISQSLKHLDA 77

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
           SL + G      + S   D++  L         T +++N  Y+ I+ VR  +L E     
Sbjct: 78  SLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATHVYFNHLYDPISLVRDHRLKEMLAAE 135

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--- 186
            ++ +SF+  +L  P  +++   Q + ++T F    +   +Q D  +  +P  ++     
Sbjct: 136 GIVVQSFNADLLYEPWEVVDDERQPFTMFTAFWNRCLS--MQYDPPAPLLPPKKINSGDL 193

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            + PS    F D   +  + +       G QNA   L  F    +  Y   R       T
Sbjct: 194 SMCPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSAST 253

Query: 243 SQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRH 293
           S LSP+L  G LS R+ ++  R+K+     L+    G  +       +L  +  RE+ R+
Sbjct: 254 SLLSPHLHFGELSVRKVFHLVRMKQ-----LVWSNEGNHAAEESCTLFLRSIGLREYSRY 308

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +PS    +P +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 309 LSFNHPS-SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRI 367

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   +  DS    RI NP  
Sbjct: 368 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNPQF 427

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           +G +FDP G ++R W+PEL  +PT++IH    AP S L    + L  NYPLPIV+   A
Sbjct: 428 EGYKFDPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAA 486


>gi|56553448|gb|AAV97867.1| cryptochrome 2 [Sorghum bicolor]
          Length = 690

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 145/479 (30%), Positives = 232/479 (48%), Gaps = 34/479 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA      +V+  ++ +PE+   +        +I  SL ++  
Sbjct: 18  VVWFRRDLRVEDNPALAAAARAG-GEVVPAYVWSPEEEGPYYPGRVSRWWISQSLKRLDA 76

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
           SL + G      + S   D++  L         T +++N  Y+ I+ VR  +L E     
Sbjct: 77  SLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATHVYFNHLYDPISLVRDHRLKEMLAAE 134

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG--- 186
            ++ +SF+  +L  P  +++   Q + ++T F    +   +Q D  +  +P  ++     
Sbjct: 135 GIVVQSFNADLLYEPWEVVDDEGQPFTMFTAFWNRCLS--MQYDPPAPLLPPKKINSGDL 192

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            + PS    F D   +  + +       G QNA   L  F    +  Y   R       T
Sbjct: 193 SMCPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSAST 252

Query: 243 SQLSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRH 293
           S LSP+L  G LS R+ ++  R+K+     L+    G  +       +L  +  RE+ R+
Sbjct: 253 SLLSPHLHFGELSVRKVFHLVRMKQ-----LVWSNEGNHAAEESCTLFLRSIGLREYSRY 307

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +PS    +P +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 308 LSFNHPS-SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRI 366

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   +  DS    RI NP  
Sbjct: 367 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNPQF 426

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           +G +FDP G ++R W+PEL  +PT++IH    AP S L    + L  NYPLPIV+   A
Sbjct: 427 EGYKFDPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAA 485


>gi|330683891|gb|EGG95662.1| putative deoxyribodipyrimidine photo-lyase [Staphylococcus
           epidermidis VCU121]
          Length = 226

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 84/199 (42%), Positives = 119/199 (59%), Gaps = 5/199 (2%)

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           F    + +Y +  D  +    S L  YL+ G+L  R+  N L E++       +    ++
Sbjct: 33  FLNSNIAHYDKLTDDVSQDFVSGLGKYLAYGLLDIREIINDLLEDYE----SDEKNYEAF 88

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + ++I+REFY  LM  YP     K F      ++W+ +    + WK+G TG+PI+DAAM+
Sbjct: 89  IRDVIFREFYYVLMMQYPETAT-KSFSEKYRNMQWSYNKTHFEVWKKGQTGYPIVDAAMK 147

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +LN  G+MHNRLRM+ + FL K+L +DW  GEEYF   L+D D ASN  GWQW+ASTG D
Sbjct: 148 KLNRTGYMHNRLRMVVSQFLTKNLFIDWTWGEEYFRQYLIDYDNASNVHGWQWSASTGTD 207

Query: 402 SVPYFRIFNPTIQGKRFDP 420
            VPYFR+FNP  Q +RFD 
Sbjct: 208 EVPYFRMFNPIRQSERFDK 226


>gi|332662834|ref|YP_004445622.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100]
 gi|332331648|gb|AEE48749.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100]
          Length = 454

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/458 (29%), Positives = 215/458 (46%), Gaps = 43/458 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHFIYAS 64
           +VW R DLR+ DN+AL  A  N+  +VI VFI     ++             ++ FI  S
Sbjct: 8   IVWFRQDLRLHDNEALQDALRNA-YEVIPVFIFDERTFKGKTSFGFPKTGKYRAQFIIES 66

Query: 65  LLQVQKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           +  +++SL +    ++ +  +  +       L S   + + + +F NR+    E R    
Sbjct: 67  VADLRQSLRKLNSDLIVRVGKTEDI------LFSMAKECKTSWIFCNRERTAEEARIQDE 120

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMY-KVYTPFRKAL-----IQNLVQADLRS 176
           LE RL        ++   +L   + L   +Q    V+T FRK +     ++  +    R+
Sbjct: 121 LENRLWSIGQEMRYNRGKMLYYTADLPFPIQHTPDVFTQFRKEVERIVPVREPLSKPDRT 180

Query: 177 LPVPAIRLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VY 228
               +        PS      N+  F   P   +   F  GE   +  L+ +  E   + 
Sbjct: 181 FNPLSFEFPAGDIPSLEELGHNVDDFAKDPRAVLS--FKGGETEGIKRLQYYLWETDLIK 238

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN- 283
            Y E R+ +     +S+LSP+L+ G LSP+  ++ LK+       + + GA     WL  
Sbjct: 239 NYKETRNGLLGGDYSSKLSPWLAQGCLSPKLIYHELKK------YEAQRGANESTYWLFF 292

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL+WR+F+R +   Y +               W ++  +LQ W  G TG P IDA M +L
Sbjct: 293 ELLWRDFFRFMGKKYGNKIFQIGGTRGQADPRWTENPQVLQKWIDGTTGVPFIDANMLEL 352

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              G+M NR R   ASFLVKDL ++W++G EYF S L+D D+ SN G W + A  G+D  
Sbjct: 353 KHTGFMSNRGRQNVASFLVKDLNINWQMGAEYFESILIDYDVCSNWGNWNYIAGVGSDPR 412

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
              R FN   Q KR+DP G +++HWLPEL ++P   +H
Sbjct: 413 ED-RYFNTLTQAKRYDPHGDYVKHWLPELADLPADKVH 449


>gi|297582918|ref|YP_003698698.1| DASH family cryptochrome [Bacillus selenitireducens MLS10]
 gi|297141375|gb|ADH98132.1| cryptochrome, DASH family [Bacillus selenitireducens MLS10]
          Length = 478

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 140/482 (29%), Positives = 230/482 (47%), Gaps = 39/482 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI--ATPEQWRQHGISARQSH---FIYA 63
           V+++W R+DLRI D++ L  A H +  +  AVF+  A  ++    G+     H   F+  
Sbjct: 4   VNVIWFRHDLRIHDHEPLRLA-HWAKEETEAVFVRDARMDEKVTPGLKRAGEHRERFLME 62

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL+ +  SL  +G+ F   +       I+WL     ++  T +F +      E R  + +
Sbjct: 63  SLVVLAGSLEAEGMPFTVLKGPVVKTMIDWL----TERGATDVFLHEHPGFEERRDLEEV 118

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAI 182
           ++ L H +     +   +     +     +    +T FRK L  +L +    RS    + 
Sbjct: 119 QRALPH-IHWHVSEGHTMFRRDQLPFSFSEFPMSFTMFRKRLEAHLRLPEKKRSFSYDSY 177

Query: 183 RLTGPVTPSNIPRFFDYPFQAI------------DPMFPIGEQNALHILRKFC--KEKVY 228
                  P  +       F A+              +   GEQ AL  LR +     +++
Sbjct: 178 DTVTEAEPVFLSGKESGSFGAVRGSGDHIPHAGGQGIVRGGEQEALARLRSYVGNASRLF 237

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLN-EL 285
            Y E RD + A   +S+LS +L+ G LSP++ +  +    +D+     ++ +  WL  EL
Sbjct: 238 TYKETRDGMFAFDDSSKLSFWLANGSLSPKRVYRAI----LDMEAANGRNESSYWLFFEL 293

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WRE+++ LM    +    K  +     I W++D  L QAWK G TGFP++DAAMR+L  
Sbjct: 294 LWREYFQWLMLATDARLFTKQGL-LDVAIVWHEDKALFQAWKDGETGFPLVDAAMRELKA 352

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R   ASFL K+L ++W  G  YF  QL+D D ASN G W + A  G D +  
Sbjct: 353 TGYMSNRARQNAASFLTKNLGINWLWGARYFEEQLIDYDPASNYGNWAYQAGVGTD-LRE 411

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
            R FN   QG R+DP+G++ ++WL   + +P   ++ P     K     ++P PIVD ++
Sbjct: 412 LRAFNVIGQGIRYDPKGSYAKNWLHLPDTLPGHTVYDP----VKLSAHTDWPQPIVDLEE 467

Query: 466 AC 467
           + 
Sbjct: 468 SL 469


>gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera]
          Length = 584

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/465 (29%), Positives = 216/465 (46%), Gaps = 58/465 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFI 61
            V +VW RNDLR+ DN+AL  A  +S A V+ V+   P  +            A ++ F+
Sbjct: 107 GVAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALRAQFL 165

Query: 62  YASLLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
              L  ++++L  +G+  + Q+ +        E L S         ++ +++    E+  
Sbjct: 166 IECLADLKRNLMNRGLNLLIQHGKPE------EILPSLAKTFEAHTVYAHKETCSEELNV 219

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPP----------GSILNH-------ALQMYKVYTPFR 162
           ++L+   L+  V+  S   S  L            GS + H          +  VYT FR
Sbjct: 220 ERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFR 279

Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
           K++            P     L GP  P NI    D+   +    F  GE  AL   R  
Sbjct: 280 KSVESKCTIRICIRTPT----LLGP--PPNIE---DWGSVSRGMRFIGGEAAALS--RDL 328

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            K    Y   +  +     +++ SP+L+ G LSPR  +  +K    +   +     +  L
Sbjct: 329 LK---VYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKR--YEKERQANDSTYWVL 383

Query: 283 NELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIE--WNKDSHLLQAWKQGYTGFPIIDA 338
            ELIWR+++R L   Y +    +G P      K+E  W++D  + +AW+ G TG+P+IDA
Sbjct: 384 FELIWRDYFRFLSVKYRNSLFHLGGP-----RKVEARWSQDQTMFEAWRDGCTGYPLIDA 438

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            M++L+  G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  
Sbjct: 439 NMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 498

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           GND     R F+   Q K +DP+G ++  WLPEL  +P    + P
Sbjct: 499 GNDPRED-RYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP 542


>gi|293337104|ref|NP_001170477.1| LOC100384475 [Zea mays]
 gi|226452137|gb|ACO59248.1| cryptochrome 1 [Zea mays]
          Length = 699

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 141/483 (29%), Positives = 225/483 (46%), Gaps = 43/483 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA   +  +V+  ++  PE+   +        ++  SL  +  
Sbjct: 19  VVWFRRDLRVEDNPALAAAPRAA-GEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 77

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL + G      + S+  D++  L         T LF+N  Y+   + RD  ++++L   
Sbjct: 78  SLRRLGACRLVTRRSS--DAVVALIDLVRSTGATHLFFNHLYDPLSLVRDHRVKEQLAAE 135

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI------------QNLVQADLRSL 177
            I  +SF+  +L  P  +L+   + + ++ PF    +            + +   DL   
Sbjct: 136 GIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPDPAAPLLPPKRINSGDLSRC 195

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQ 233
           P   +             F D   +  + +       G QNA   L  F    +  Y   
Sbjct: 196 PWDELV------------FEDESERGSNALLARAWSPGWQNADKALTAFLNGPLMDYSVN 243

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWRE 289
           R       TS LSPYL  G LS R+ +++++ + +    D     +     +L  +  RE
Sbjct: 244 RKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLRSIGLRE 303

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R+L   +P     KP +       W  +    + W+QG TG+P++DA MR+L   GW+
Sbjct: 304 YSRYLTFNHP-CSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWV 362

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI 
Sbjct: 363 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRID 422

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDH 463
           NP  +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV+ 
Sbjct: 423 NPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVEL 482

Query: 464 KKA 466
             A
Sbjct: 483 DAA 485


>gi|242096612|ref|XP_002438796.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
 gi|241917019|gb|EER90163.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
          Length = 577

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 139/484 (28%), Positives = 227/484 (46%), Gaps = 63/484 (13%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------ISARQS 58
              V +VW RNDLR+ DN+AL  A   S+A V+ V+   P  +             A ++
Sbjct: 76  GAGVAVVWFRNDLRVLDNEALLRAWSASEA-VLPVYCVDPRVFAGSTHYFGFPKTGALRA 134

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L  +++ L +KG+              E L S         ++ +++    E+ 
Sbjct: 135 QFLIECLGDLKQILRKKGLDLLVRH----GKPEEILPSIAKAVSAHTIYAHKETCSEELL 190

Query: 119 RDKLLEKRLQHRVIC--------KSFDDSVLLPPGSILNH-------ALQMYKVYTPFRK 163
            ++L+ K L+   I         K  +  + L  G+ + H          +  VYT FRK
Sbjct: 191 VERLVSKGLEQVQIAQGGASVPKKPLNPRLQLIWGATMYHIDDLPFPVSNLPDVYTQFRK 250

Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---------------F 208
           A+       +   LP P++   GP+  S+I     +   AI  +               F
Sbjct: 251 AVESKSSVRNCTKLP-PSL---GPLPSSSIDEIGGW--GAIPTLESLGLSVTKSEKGMHF 304

Query: 209 PIGEQNALHILRKFCKEKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
             GE  AL  + ++  +K     Y V +  +     +++ SP+L+ G LSPR     +K 
Sbjct: 305 IGGENAALGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKR 364

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKI--EWNKDSH 321
                +    +  +  L ELIWR+++R L A Y +    +G P      K+  +W++D  
Sbjct: 365 YEKQRVANDST--YWVLFELIWRDYFRFLSAKYGNTIFHLGGP-----RKVVSKWSQDQA 417

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           L ++W+ G TG+P+IDA MR+L+  G+M NR R I  SFLV+D+ +DWR+G E+F + LL
Sbjct: 418 LFESWRDGRTGYPLIDANMRELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLL 477

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN G W + A  GND     R F+   Q K +DP+G ++ +WLPEL ++  +  +
Sbjct: 478 DYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKSYDPEGEYVAYWLPELRSLAKERRN 536

Query: 442 APHS 445
            P +
Sbjct: 537 FPGA 540


>gi|225429814|ref|XP_002280771.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 549

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 138/480 (28%), Positives = 222/480 (46%), Gaps = 67/480 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFI 61
            V +VW RNDLR+ DN+AL  A  +S A V+ V+   P  +            A ++ F+
Sbjct: 51  GVAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALRAQFL 109

Query: 62  YASLLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
              L  ++++L  +G+  + Q+ +        E L S         ++ +++    E+  
Sbjct: 110 IECLADLKRNLMNRGLNLLIQHGKPE------EILPSLAKTFEAHTVYAHKETCSEELNV 163

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPP----------GSILNH-------ALQMYKVYTPFR 162
           ++L+   L+  V+  S   S  L            GS + H          +  VYT FR
Sbjct: 164 ERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFR 223

Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------------FPI 210
           K++            P     L GP  P NI  +   P  +ID +            F  
Sbjct: 224 KSVESKCTIRICIRTPT----LLGP--PPNIEDWGSVP--SIDQLGLHEEKVSRGMRFIG 275

Query: 211 GEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           GE  AL  + ++  +K     Y   +  +     +++ SP+L+ G LSPR  +  +K   
Sbjct: 276 GEAAALSRVNEYFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKR-- 333

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIE--WNKDSHLL 323
            +   +     +  L ELIWR+++R L   Y +    +G P      K+E  W++D  + 
Sbjct: 334 YEKERQANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGP-----RKVEARWSQDQTMF 388

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +AW+ G TG+P+IDA M++L+  G+M NR R I  SFLV+D+ +DWR+G E+F + LLD 
Sbjct: 389 EAWRDGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDY 448

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           D  SN G W + A  GND     R F+   Q K +DP+G ++  WLPEL  +P    + P
Sbjct: 449 DPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP 507


>gi|50914603|ref|YP_060575.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394]
 gi|50903677|gb|AAT87392.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394]
          Length = 368

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/384 (32%), Positives = 187/384 (48%), Gaps = 40/384 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           ++ V ++W R DLRI   KAL  A   S +  + VF    EQ      S  QS FI  S+
Sbjct: 10  SVMVSVMWFRRDLRIDVQKALAHAI-ASQSPTLCVFQFNKEQLNLLH-SRNQSSFI-TSV 66

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLD-SYCLQQRVTKL-------FYNRQYEINEV 117
           L  +K L          +C   D  + + D   C +Q +T+L       F   +     +
Sbjct: 67  LAFRKLL----------KCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRL 116

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           R  K  +   ++ +   ++ D  L     I+N + Q YKV+TP+ + + QN  +     +
Sbjct: 117 RDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYR-IWQNYPKETPIKV 175

Query: 178 PVPAIRLTGPVTPSNIPRFF----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +   R     TP ++ R      D  +Q +       +Q     L +F ++++  Y   
Sbjct: 176 ELSQGRWLNLETPDDVLRTVESIKDEKYQDVATFDEASKQ-----LNRFIQDQLAAYHAN 230

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292
           RD PA  GTS+LSP+L IG +  R  ++ +++        P S G  ++L EL WR+FY 
Sbjct: 231 RDFPAQLGTSRLSPFLRIGAIGIRTVYHAVRQ-------APNSLGQATFLKELAWRDFYN 283

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +   YP     +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNR
Sbjct: 284 MVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNR 342

Query: 353 LRMITASFLVKDLLVDWRIGEEYF 376
           LRMI ASFL KDLL DWR+GE+YF
Sbjct: 343 LRMIVASFLTKDLLCDWRLGEQYF 366


>gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 138/480 (28%), Positives = 222/480 (46%), Gaps = 67/480 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFI 61
            V +VW RNDLR+ DN+AL  A  +S A V+ V+   P  +            A ++ F+
Sbjct: 88  GVAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALRAQFL 146

Query: 62  YASLLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
              L  ++++L  +G+  + Q+ +        E L S         ++ +++    E+  
Sbjct: 147 IECLADLKRNLMNRGLNLLIQHGKPE------EILPSLAKTFEAHTVYAHKETCSEELNV 200

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPP----------GSILNH-------ALQMYKVYTPFR 162
           ++L+   L+  V+  S   S  L            GS + H          +  VYT FR
Sbjct: 201 ERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFR 260

Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------------FPI 210
           K++            P     L GP  P NI  +   P  +ID +            F  
Sbjct: 261 KSVESKCTIRICIRTPT----LLGP--PPNIEDWGSVP--SIDQLGLHEEKVSRGMRFIG 312

Query: 211 GEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           GE  AL  + ++  +K     Y   +  +     +++ SP+L+ G LSPR  +  +K   
Sbjct: 313 GEAAALSRVNEYFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKR-- 370

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIE--WNKDSHLL 323
            +   +     +  L ELIWR+++R L   Y +    +G P      K+E  W++D  + 
Sbjct: 371 YEKERQANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGP-----RKVEARWSQDQTMF 425

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +AW+ G TG+P+IDA M++L+  G+M NR R I  SFLV+D+ +DWR+G E+F + LLD 
Sbjct: 426 EAWRDGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDY 485

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           D  SN G W + A  GND     R F+   Q K +DP+G ++  WLPEL  +P    + P
Sbjct: 486 DPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP 544


>gi|308080350|ref|NP_001183937.1| cryptochrome 2 [Zea mays]
 gi|257802570|gb|ACV66337.1| cryptochrome 2 [Zea mays]
          Length = 643

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 141/479 (29%), Positives = 227/479 (47%), Gaps = 35/479 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA   +  +V+  ++ +PE+   +        ++  SL  +  
Sbjct: 19  VVWFRRDLRVEDNPALAAAARTA-GEVVPAYVWSPEEDGPYYPGRVSRWWLSQSLKHLDA 77

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL + G      + S+  D++  L         T LF+NR Y+   + RD  ++++L   
Sbjct: 78  SLRRLGACRLVTRRSS--DAVVALIDLVRSTGATHLFFNRLYDPLSLVRDHRVKEQLSAE 135

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI------------QNLVQADLRSL 177
            +  +SF+  +L  P  +L+     + ++ PF    +            + +   DL   
Sbjct: 136 GITVQSFNADLLYEPWEVLDDDGFPFTMFAPFWNRCLCMPDPAAPLLPPKRINSGDLSRC 195

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           P   +         +         +A  P    G QNA   L  F    +  Y       
Sbjct: 196 PWDELIFEDESEKGSNALLA----RAWSP----GWQNADKALTAFLDGPLVDYSANHKKA 247

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFS---WLNELIWREFYRH 293
               TS LSPYL  G LS R+ +++++ ++ +      ++G  S   +L  +  RE+ R+
Sbjct: 248 DSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGDRAGEESCTLFLRAIGLREYSRY 307

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P   + KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 308 LTFNHP-CSLEKPLLSHLRFFPWVVDEVHFKVWRQGRTGYPLVDAGMRELWATGWVHDRI 366

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP  
Sbjct: 367 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQF 426

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYP PIV+   A
Sbjct: 427 EGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVELDAA 485


>gi|22327046|ref|NP_568461.2| CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding
           [Arabidopsis thaliana]
 gi|119390180|pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
           Thaliana
 gi|238828067|pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
 gi|238828069|pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
 gi|238828070|pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
 gi|238828071|pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
 gi|238828072|pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
 gi|18086429|gb|AAL57669.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
 gi|20857182|gb|AAM26705.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
 gi|332005986|gb|AED93369.1| cryptochrome DASH [Arabidopsis thaliana]
          Length = 526

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 222/464 (47%), Gaps = 45/464 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSH 59
              V ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +  
Sbjct: 39  GKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGG 97

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+   L+ ++K+L ++G+              E L S         +F +++    EV  
Sbjct: 98  FLMECLVDLRKNLMKRGLNLLIRSGK----PEEILPSLAKDFGARTVFAHKETCSEEVDV 153

Query: 120 DKLLE---KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQ 171
           ++L+    KR+ +    +    S +     +      +  VYT FRK++     I++  +
Sbjct: 154 ERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTR 213

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF----CKEKV 227
             L   P P++   G V    + +    P +    M  +G ++A  + R F     K+ +
Sbjct: 214 IPLSLGPTPSVDDWGDV--PTLEKLGVEPQEVTRGMRFVGGESA-GVGRVFEYFWKKDLL 270

Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLN 283
             Y E R+ +     +++ SP+L+ G +SPR  +    R ++E V       +  +  L 
Sbjct: 271 KVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV-----ANNSTYWVLF 325

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFI----PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           ELIWR+++R L     S+  G        P   + +W++D  L ++W+   TG+P+IDA 
Sbjct: 326 ELIWRDYFRFL-----SIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDAN 380

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           M++L+T G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  G
Sbjct: 381 MKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 440

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           ND     R F+   Q + +DP+G ++  WL +L  +P +  H P
Sbjct: 441 NDPRED-RYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 483


>gi|97047673|sp|Q84KJ5|CRYD_ARATH RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
           AltName: Full=Cryptochrome-3; Flags: Precursor
          Length = 569

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 222/464 (47%), Gaps = 45/464 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSH 59
              V ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +  
Sbjct: 82  GKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGG 140

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+   L+ ++K+L ++G+              E L S         +F +++    EV  
Sbjct: 141 FLMECLVDLRKNLMKRGLNLLIRSGK----PEEILPSLAKDFGARTVFAHKETCSEEVDV 196

Query: 120 DKLLE---KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQ 171
           ++L+    KR+ +    +    S +     +      +  VYT FRK++     I++  +
Sbjct: 197 ERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTR 256

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF----CKEKV 227
             L   P P++   G V    + +    P +    M  +G ++A  + R F     K+ +
Sbjct: 257 IPLSLGPTPSVDDWGDV--PTLEKLGVEPQEVTRGMRFVGGESA-GVGRVFEYFWKKDLL 313

Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLN 283
             Y E R+ +     +++ SP+L+ G +SPR  +    R ++E V       +  +  L 
Sbjct: 314 KVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV-----ANNSTYWVLF 368

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFI----PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           ELIWR+++R L     S+  G        P   + +W++D  L ++W+   TG+P+IDA 
Sbjct: 369 ELIWRDYFRFL-----SIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDAN 423

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           M++L+T G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  G
Sbjct: 424 MKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 483

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           ND     R F+   Q + +DP+G ++  WL +L  +P +  H P
Sbjct: 484 NDPRED-RYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 526


>gi|150261312|pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
 gi|150261313|pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
 gi|28971609|dbj|BAC65244.1| cryptochrome dash [Arabidopsis thaliana]
          Length = 525

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 222/464 (47%), Gaps = 45/464 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSH 59
              V ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +  
Sbjct: 38  GKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGG 96

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+   L+ ++K+L ++G+              E L S         +F +++    EV  
Sbjct: 97  FLMECLVDLRKNLMKRGLNLLIRSGK----PEEILPSLAKDFGARTVFAHKETCSEEVDV 152

Query: 120 DKLLE---KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQ 171
           ++L+    KR+ +    +    S +     +      +  VYT FRK++     I++  +
Sbjct: 153 ERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTR 212

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF----CKEKV 227
             L   P P++   G V    + +    P +    M  +G ++A  + R F     K+ +
Sbjct: 213 IPLSLGPTPSVDDWGDV--PTLEKLGVEPQEVTRGMRFVGGESA-GVGRVFEYFWKKDLL 269

Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLN 283
             Y E R+ +     +++ SP+L+ G +SPR  +    R ++E V       +  +  L 
Sbjct: 270 KVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV-----ANNSTYWVLF 324

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFI----PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           ELIWR+++R L     S+  G        P   + +W++D  L ++W+   TG+P+IDA 
Sbjct: 325 ELIWRDYFRFL-----SIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDAN 379

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           M++L+T G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  G
Sbjct: 380 MKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 439

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           ND     R F+   Q + +DP+G ++  WL +L  +P +  H P
Sbjct: 440 NDPRED-RYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 482


>gi|218191029|gb|EEC73456.1| hypothetical protein OsI_07758 [Oryza sativa Indica Group]
 gi|222623102|gb|EEE57234.1| hypothetical protein OsJ_07222 [Oryza sativa Japonica Group]
          Length = 719

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 143/485 (29%), Positives = 226/485 (46%), Gaps = 36/485 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA   +  +V+ V++  PE+   +        ++  SL  +  
Sbjct: 21  VVWFRRDLRVEDNPALAAAARAA-GEVVPVYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY----------EINEVRRD 120
           SL + G      + S   D++  L         T LF+N  Y           ++ VR  
Sbjct: 80  SLRRLGASRLVTRRSA--DAVVALIELVRSIGATHLFFNHLYGSIDPEFQIDPLSLVRDH 137

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF--RKALIQNLVQADLRSLP 178
           ++        +  +SF+  +L  P  +++     + ++ PF  R   + +     L    
Sbjct: 138 RVKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPPKR 197

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQR 234
           +    L     PS+   F D   +  + +       G QNA   L  F    +  Y   R
Sbjct: 198 IAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNR 257

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIW 287
                  TS LSPYL  G LS R+ +++++   +  L+    G  +       +L  +  
Sbjct: 258 KKADSASTSLLSPYLHFGELSVRKVFHQVR---MKQLMWSNEGNHAGDESCVLFLRSIGL 314

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE+ R+L   +P   + KP +       W  D    + W+QG TG+P++DA MR+L   G
Sbjct: 315 REYSRYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATG 373

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R
Sbjct: 374 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDR 433

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461
           I NP ++G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV
Sbjct: 434 IDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIV 493

Query: 462 DHKKA 466
           +   A
Sbjct: 494 ELDAA 498


>gi|328675520|gb|AEB28195.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
          Length = 499

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 140/485 (28%), Positives = 221/485 (45%), Gaps = 35/485 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLRI DN AL  A    D  V+ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQVVWFKRDLRINDNLALSLASEKGD--VLPLYIIEPELWQQPDMSYRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127
              L++ G            D++E  +    +  V  ++ + +   N   +RD  LEK  
Sbjct: 59  NTELTKLGQSL----IIMVGDAVEIFEQLIQKYSVKNIWSHEETWNNWTYQRDIKLEKFF 114

Query: 128 QHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +   I   + + + V+         AL        + K + + L++A    L       T
Sbjct: 115 KQNNITWHQPYQNGVVRCLADRDKWALL-------WHKRMSEKLIKAPT-ELKFICENQT 166

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
              T  N+   +D  ++        G   AL IL  F  E+   Y ++   P  A +  S
Sbjct: 167 KIPTAENLGLEYDNSYKRQKG----GRIRALRILDSFLYERGCGYTKEMSSPVTAFKSCS 222

Query: 244 QLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMA 296
           +LSPY++ GV+S ++ +   N+ K E  D  IK K    S   S+L+ L W   +   + 
Sbjct: 223 RLSPYIAFGVISIKEVYQLANQRKNEIKDSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLE 282

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             PS+        + +  +   +    +AWK G TG+P+IDA MR L   GW++ R+R +
Sbjct: 283 DQPSIEYKNLHPAYNQLRKEPINKQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAM 342

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SF    L +DWRI   Y      D +   +    Q    +G   +   RI+NP  Q  
Sbjct: 343 LMSFASYHLWLDWRITSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSI 400

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             DP G FIR W+PEL NV  + IH P  WL+K++ +++YP PIVD K+A     +  Y 
Sbjct: 401 DQDPNGEFIRRWVPELENVTDENIHTP--WLEKHN-AVDYPDPIVDEKQARKFAADNVYK 457

Query: 477 AKKQS 481
            +K S
Sbjct: 458 IRKNS 462


>gi|224032111|gb|ACN35131.1| unknown [Zea mays]
          Length = 495

 Score =  162 bits (411), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 97/264 (36%), Positives = 143/264 (54%), Gaps = 15/264 (5%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G +NA ++L +F    +  Y E         TS LSPYL  G LS R  +  +K   V  
Sbjct: 55  GWRNAENMLEEFVSYGLLEYSEHGMKVGGSTTSLLSPYLHFGELSVRMIYQLVKMRQVKW 114

Query: 271 LIKPKSGAFS----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
             + KS A      +L  + +RE+ R+L   YP     + F+   +   W  D    ++W
Sbjct: 115 QNEGKSEAEESVRLFLRSIGFREYSRYLCFNYP-FTHERSFLGNLKHYPWLLDEGRFKSW 173

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           +QG TG+P++DA MR+L   GW HNR+R+I +SF VK L + W  G +YF   LLD DL 
Sbjct: 174 RQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFAVKFLQIPWIWGMKYFWDVLLDADLE 233

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           S+  GWQ+ + +  D     R+ NP +QG+++DP G ++R W+PEL  +PT++IH+P  W
Sbjct: 234 SDILGWQYISGSLPDGHELSRLDNPEVQGQKYDPDGEYVRTWIPELARMPTEWIHSP--W 291

Query: 447 LDKN--------DLSLNYPLPIVD 462
              N        +L  NYP PIV+
Sbjct: 292 AAPNSILQVAGVELGFNYPKPIVE 315


>gi|119490469|ref|ZP_01622930.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106]
 gi|119453940|gb|EAW35095.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106]
          Length = 512

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 141/476 (29%), Positives = 225/476 (47%), Gaps = 46/476 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + ++W R DLR+ DN  + A    +D +++  FI  P  ++Q  I   +  F++ SL  +
Sbjct: 1   MQILWFRRDLRLIDND-IVAQAAATDEEILPCFIIDPWFYQQPDIGGMRVQFLFESLACL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRRDKLLEKRL 127
             SL   G    Y    N  + I+ L    L+     +L +NR  +++  R+        
Sbjct: 60  DGSLRDLGSRL-YLFEGNSVEVIQTLTGELLELGYHPRLVFNRDIQVDYGRKRD------ 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--LPVPAIRLT 185
            H+VI   F   + L     LN+ LQ+        +    N   ADLR    P+P  +L 
Sbjct: 113 -HQVI--EFYQRLGLNCYLGLNNFLQI----EGENREQWMNEYYADLRQPQHPIPT-KLK 164

Query: 186 GPVTPSNIPRF-FD-----YPFQAID-PMFPIGEQNALHILRKFCKEKVYYY---VEQRD 235
            P  P N+ +  FD     Y F + +  +F  GE  A   L  + K +   Y   + +  
Sbjct: 165 TPEIPLNLTQLTFDELQQKYNFNSQNSALFTGGEVEAQKTLNSWLKSRYNGYHWKLSRPQ 224

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRH 293
           I  + GTS LS +L+ G +S RQ + + K    +L    K+     S+ N L WR+    
Sbjct: 225 IATLGGTSHLSAHLAFGTISTRQVYQQTKARANELKENAKAQFALKSFRNCLRWRDSAIQ 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHL-------LQAWKQGYTGFPIIDAAMRQLNTI 346
            + ++P +     +    E  +W  D  L        QAW+QG TGFP++DA+M+QL ++
Sbjct: 285 RLYYFPELAYQNCY---PEFDKWYSDGELEGEKLEYFQAWQQGKTGFPLVDASMKQLQSM 341

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWM+ R+R + A+FL     V W  G  ++M+ L+DGD+A N+  WQ  A   N     F
Sbjct: 342 GWMNFRMRAMCANFLTVICGVSWHHGARHYMNYLVDGDIAINHWQWQAQAGVTNPLSSTF 401

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           RI+NPT      DP+  F+R W+PEL +   + I +     +  +LS  YP P++D
Sbjct: 402 RIYNPTKNLTEKDPKFEFVRDWIPELRDCTDEQILSG----EIGELS-GYPEPMLD 452


>gi|290997872|ref|XP_002681505.1| predicted protein [Naegleria gruberi]
 gi|284095129|gb|EFC48761.1| predicted protein [Naegleria gruberi]
          Length = 528

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/260 (36%), Positives = 144/260 (55%), Gaps = 14/260 (5%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           F  GE  AL   + + + K+  Y   R+      +++LSP+L+ G +S R  +  +++  
Sbjct: 226 FIGGEDKALKRCKFYIENKLKNYSTTRNGNIGDYSTKLSPWLANGCISSRYIYTEIQKNS 285

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNK-DS 320
            +   K KS A   ++EL+WR+FY++L        FY         + +  ++  N+  +
Sbjct: 286 NE---KSKSSANILVSELLWRDFYKYLAWKMGNSFFYEKALQPNKELDYEWEVPLNEYKN 342

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
              Q W +G TG+P +DA MR+L   G+M+NR RM+ ASFL+KD+ +DWR+G EYF  QL
Sbjct: 343 ERFQQWCKGKTGYPFVDACMRELLNTGFMNNRGRMVVASFLIKDMKIDWRMGAEYFERQL 402

Query: 381 LDG-DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           LD  D  SN G W W+A  G D  P  R FNP  QG   D  G FI+ W+ EL +VP++ 
Sbjct: 403 LDSTDSCSNYGNWAWSAGIGCDFRP--RYFNPIKQGLDHDKNGEFIKIWIHELASVPSKS 460

Query: 440 IHAPHSWLDKNDLSLNYPLP 459
           IH P+  LD+ D    Y +P
Sbjct: 461 IHLPYITLDE-DEKKRYKIP 479


>gi|195995819|ref|XP_002107778.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens]
 gi|190588554|gb|EDV28576.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens]
          Length = 384

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 129/404 (31%), Positives = 191/404 (47%), Gaps = 45/404 (11%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           ++ +   LVWLR DLR+ DN AL+ A        + +F       R+ G +     ++Y 
Sbjct: 2   SSKIPCTLVWLRRDLRLIDNPALFHAAKRGQLITVYIFDEDCSGRRKTGQACLW--WLYH 59

Query: 64  SLLQVQKSLSQKGIVFQYHQCSN-FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           SL  +   LSQ  I       ++ F    E LDSY        +++NR YE  E  RD  
Sbjct: 60  SLKSLHNQLSQWNIPLIMKSGNDAFTILKELLDSY----NADTIYWNRCYEPFEYNRDCS 115

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +E++L+   V  +++ D VL  P +I        ++Y  F    +         SLP P 
Sbjct: 116 IEEKLKMENVTVETYQDRVLFEPWTIKTAKGGPVQIYIHFWNQCL---------SLPQPR 166

Query: 182 I--------RLTGPVTPSNIPRFF--------DYPFQAIDPMFPIGEQNALHILRKFCKE 225
                      TG  +  + P  +        D P +  D   P GE+ A+  L+ F K 
Sbjct: 167 KPYDKPKFKNQTGCQSKCDEPAVWQRLAKLSQDMPMKLQDFWHP-GEEQAISKLKSFIKN 225

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSWL 282
            +  Y E+     +  TS LSPYL  G +SP   W+ ++          +K +S    +L
Sbjct: 226 SLNAYAEKSQCLRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVKSESLK-QYL 284

Query: 283 NELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
             L WRE+  HL+  YP +   C    F    E+++   D   LQ+W+QG TG+P++DA 
Sbjct: 285 RSLGWREYTCHLLFHYPDLPQKCFRSSF----EQLKLQVDPVKLQSWQQGNTGYPVVDAG 340

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           MRQL+  G M NRLRMI ASFL+K LLV W+ GEE+F S+L+D 
Sbjct: 341 MRQLSVAGIMPNRLRMIVASFLIKHLLVPWQKGEEWFWSKLIDA 384


>gi|254373814|ref|ZP_04989297.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548]
 gi|151571535|gb|EDN37189.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548]
          Length = 499

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 133/485 (27%), Positives = 223/485 (45%), Gaps = 35/485 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAERGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127
              L++ G            D++E  +    +  +  ++ N++   N   +RD  LEK  
Sbjct: 59  NTELTKLGQSLTIM----LGDAVEIFEQLIQKYPIKNVWSNQETWNNWTYQRDIKLEKFF 114

Query: 128 QHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +   I   + + + V+         AL        + + + + +++A  +   +   ++ 
Sbjct: 115 KQNNIAWHQPYQNGVVRCLADRDKWAL-------LWHQRMSEKIIRAPTKLKFICENQIK 167

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
            P T  ++   +D  ++        G   AL IL  F  ++   Y ++   P  A +  S
Sbjct: 168 IP-TAESLGLEYDNCYKRQKG----GRIRALRILDSFLYQRGCSYTKEMSSPVTAFKSCS 222

Query: 244 QLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           +LSPY++ GV+S ++ +       N +KE  V    K  S   S+L+ L W   +   + 
Sbjct: 223 RLSPYIAFGVISLKEIYQKATQRKNEIKESRVKNKTKWLSAMRSFLSRLCWHCHFMQKLE 282

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             PS+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +
Sbjct: 283 DQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAM 342

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q  
Sbjct: 343 LMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSI 400

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             DP G FIR WLPEL NV  + IH P  WL+K++ SL+YP PI+D K+A     +  Y 
Sbjct: 401 DQDPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIYK 457

Query: 477 AKKQS 481
            +K S
Sbjct: 458 IRKSS 462


>gi|166007599|gb|ABY77633.1| At1g04400-like protein [Arabidopsis lyrata]
          Length = 450

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/277 (37%), Positives = 147/277 (53%), Gaps = 41/277 (14%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR---QC-------W 260
           G  NA  IL +F ++++  Y +         TS LSPYL  G +S R   QC       W
Sbjct: 51  GWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIW 110

Query: 261 NRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP-----SVCMGKPFIPWT 311
            R K    EE  DL ++           +  RE+ R++   +P     S+     F PW 
Sbjct: 111 ARDKNSEGEESADLFLRG----------IGLREYSRYICFNFPFTHEQSLLSHLRFFPW- 159

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
                + D    +AW+QG TG+P++DA MR+L   GWMHNR+R+I +SF VK LL+ W+ 
Sbjct: 160 -----DADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKW 214

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G +YF   LLD DL  +  GWQ+ + +  D     R+ NP +QG ++DP+G +IR WLPE
Sbjct: 215 GMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPE 274

Query: 432 LNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462
           L  +PT++IH    AP + L  +  +L  NY  PIVD
Sbjct: 275 LARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVD 311


>gi|318078311|ref|ZP_07985643.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actF]
          Length = 487

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 193/408 (47%), Gaps = 33/408 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +A ++ F+   L 
Sbjct: 1   MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-----DK 121
            +   L ++G      +  +    +  L      +RV        Y  N   R     + 
Sbjct: 60  DLDAGLRERGGRLVV-RAGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAALEG 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQ--ADLRSLP 178
              + ++H  +  +      LPPG ++  +   + V+TP+ R+   Q+L +     R L 
Sbjct: 119 TGAELVEHEAVITA------LPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAPRKLS 172

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP 237
           VP+      V    +PR  D   + I P     GE+     L  + ++ +  Y +  D  
Sbjct: 173 VPS-----KVRSDGVPRRED--VEGISPGLARGGEREGRAKLASWRRDGISRYEDLHDDL 225

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A  GTS+LSPYL  G LS  +C +R +                ++ +L WR+F+  ++A 
Sbjct: 226 AGDGTSRLSPYLHFGALSAAECVHRARAAGGAGADA-------FVRQLCWRDFHHQVLAA 278

Query: 298 YPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            P+    + + P  +      D+ H   AW++G TG+P++DAAMRQL   GWMHNR R++
Sbjct: 279 RPAAAH-EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLL 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            ASFL K L +DWR+G  +F+  L+DGDL +N   WQW A TG D+ P
Sbjct: 338 AASFLTKTLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP 385


>gi|327342148|gb|AEA50861.1| cry1-2 [Populus tremula]
          Length = 576

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 174/371 (46%), Gaps = 38/371 (10%)

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           VR  +  E      +  +SF+  +L  P  + +   + +  +  F    +      +   
Sbjct: 5   VRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPL 64

Query: 177 LPVPAIRLTGPVT--PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYY 230
           LP P   ++G  +  PS +  F D   +  + +       G  NA   L  F    +  Y
Sbjct: 65  LP-PKRIISGDASRCPSEMLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEY 123

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKS 276
            + R       TS LSP+L  G +S R+ +              N+  EE V+L +K   
Sbjct: 124 SKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLK--- 180

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
                   +  RE+ R+L   +P     +P +   +   W  D    +AW+QG TG+P++
Sbjct: 181 -------SIGLREYSRYLSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLV 232

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DA MR+L   GW+H+R+R++ ASF VK L + WR G +YF   LLD DL S+  GWQ+  
Sbjct: 233 DAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYIT 292

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDL 452
            T  D   + RI NP  +G +FDP G ++R WLPEL  +PT +IH    AP S L    +
Sbjct: 293 GTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTDWIHHPWNAPESVLQAAGI 352

Query: 453 SL--NYPLPIV 461
            L  NYPLPIV
Sbjct: 353 ELGSNYPLPIV 363


>gi|328676445|gb|AEB27315.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1]
          Length = 499

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 136/486 (27%), Positives = 225/486 (46%), Gaps = 37/486 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE--VRRDKLLEKR 126
              L++ G            D++E  +   +Q+   K  ++ Q   N+   +RD  LEK 
Sbjct: 59  NTELTKLGQSLAIM----LGDAVEIFEQ-LIQKYNIKNVWSHQETWNDWTYQRDIKLEKF 113

Query: 127 LQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            +   I   + + + V+       N AL        + + + + +++A  +   +   ++
Sbjct: 114 FKQNNIVWHQPYQNGVVRCLADRDNWAL-------LWHQRMSEKIIRAPTKLKFICENQI 166

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
             P T  ++   +D  ++        G   AL IL  F  ++   Y ++   P  A +  
Sbjct: 167 KIP-TAESLGLEYDNCYKRQKG----GRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSC 221

Query: 243 SQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           S+LSPY++ GV+S ++ +       N +KE  V    K  S   S+L+ L W   +   +
Sbjct: 222 SRLSPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKL 281

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              PS+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R 
Sbjct: 282 EDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRA 341

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +  SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q 
Sbjct: 342 MLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHY--LQVQMQSGTTGINSIRIYNPIKQS 399

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
              DP G FIR WLPEL NV  + IH P  WL+K++ SL+YP PI+D K+A     +  Y
Sbjct: 400 IDQDPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIY 456

Query: 476 AAKKQS 481
             +K S
Sbjct: 457 KIRKSS 462


>gi|312889794|ref|ZP_07749340.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Mucilaginibacter paludis DSM 18603]
 gi|311297720|gb|EFQ74843.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Mucilaginibacter paludis DSM 18603]
          Length = 493

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 135/483 (27%), Positives = 216/483 (44%), Gaps = 50/483 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65
           LVW RNDLRI DN+ L  A   +D KV+ VF      ++      R++      F+  ++
Sbjct: 15  LVWFRNDLRIHDNEILVEALRKAD-KVLPVFCFDNFYFKITRYGTRKTGDFRTRFLLEAV 73

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++K+L Q G            D ++ +     +  V++++++R+    E      +E 
Sbjct: 74  ADLRKTLQQHGAELIVRSG----DPVDIIPQLAEEYHVSEVYHHREVAFEETDISAKVEA 129

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L + ++  K F          +      +  V+T FRK + ++   + +R    P    
Sbjct: 130 VLWKKKLNLKHFIGHTFYHKEDLPFPIKDIPDVFTTFRKKVERD---SSIR----PCFET 182

Query: 185 TGPVT------PSNIPRF----FDYPFQAIDPM--FPIGEQNALHILRKFCKEK---VYY 229
            G ++      P  IP      FD P      +  F  GE  AL  L ++  E      Y
Sbjct: 183 PGNISIPPIDHPGEIPTLQQLGFDEPVDDSRAVLHFKGGETEALKRLHEYFWESDCLKTY 242

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWL-NEL 285
              +  +     +S+ SP+LS+G LS RQ +    R ++E      +  + +  WL  EL
Sbjct: 243 KTTRNGLLGADYSSKFSPWLSVGCLSVRQVYWEVKRYEQE------RGANDSTYWLIFEL 296

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WR+++R +   Y +                  +  L + WK G TG P IDA MR+LN 
Sbjct: 297 LWRDYFRFMFKKYGNQFFKAGGFKGQAPEVVPHEDELFEKWKAGETGVPFIDANMRELNA 356

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R   ASFLVKDL V+W  G  YF  +L+D   ASN G W + A  GND    
Sbjct: 357 TGFMSNRGRQNVASFLVKDLKVNWTKGAAYFEEKLIDYSPASNWGNWAYVAGVGNDPREN 416

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
            R  N   Q   +DP+G +++ W+PEL  +P + +  P    +      K +L +NYP  
Sbjct: 417 -RHLNVIKQAIEYDPKGEYVKTWIPELTMIPAKLVQTPFFLTEADLKLYKVELGVNYPKL 475

Query: 460 IVD 462
           I++
Sbjct: 476 IIN 478


>gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 546

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 149/509 (29%), Positives = 227/509 (44%), Gaps = 56/509 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI----------ATPEQWRQHGISARQSHF 60
           LVW R  LR+ DN AL AA   S A+V  VF+          A P     H   AR   F
Sbjct: 16  LVWFRKGLRVHDNPALDAA-RRSAARVYPVFVLDPRYLRPDPAAPSPGSAHAGVAR-VRF 73

Query: 61  IYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           +  SLL +    + L  + +V +       DD  + + +      + KL +    E   +
Sbjct: 74  LLESLLDLDARLRCLGSRLLVLRAR-----DDVSDAVCAALKDWNIGKLCFESDTEPYAL 128

Query: 118 RRDK-LLEKRLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLR 175
            RDK + +      +   S     L  P  I+  +  +    Y  F     +        
Sbjct: 129 ARDKRVTDFAAASGIEVFSPVSHTLFDPAEIIEKNGGRPPLTYQSFVATAGEPPKPVMEE 188

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEK--VYY 229
              +P I  TG      +P+  +  +    Q   P F  GE  AL  +R+  ++K  V  
Sbjct: 189 YSVLPPIGDTGGYELLPVPKLEELGYGDLSQEYIPPFRGGETEALKRMRESLQDKEWVAK 248

Query: 230 YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           + + +  P+      T+ LSPYL  G LS R  ++ +++ +       K    S   +L+
Sbjct: 249 FEKPKGDPSAFVKPATTVLSPYLKFGCLSVRYFYHCIQDVYRSAKTHTKP-PVSLAGQLL 307

Query: 287 WREFYRHLMAFYPSVCMGKPFI------PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           WR+F      FY +V +G P        P  ++I W +   L  AW+ G TG+P IDA M
Sbjct: 308 WRDF------FY-TVSLGTPNFDHMEGNPICKQIPWRESEELFVAWRDGRTGYPWIDAIM 360

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W  S  
Sbjct: 361 IQLRKWGWMHHLARHSVACFLTRGDLYIHWEQGRDVFERLLIDSDWAINNGNWLW-LSCS 419

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LS 453
           +    Y RI++P   GK++DP G +IRH++P L ++P +YI+    AP S  +K    + 
Sbjct: 420 SFFYQYHRIYSPISFGKKYDPNGDYIRHFIPVLKDMPKEYIYEPWTAPLSVQEKARCIVG 479

Query: 454 LNYPLPIVDHK---KACHHTLNQYYAAKK 479
            +YP P+VDH+   K C   + + YA+ +
Sbjct: 480 KDYPKPVVDHEAASKGCRRRMGEAYASNR 508


>gi|76802366|ref|YP_327374.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
 gi|97047786|sp|Q3IPX9|CRYD_NATPD RecName: Full=Cryptochrome DASH
 gi|76558231|emb|CAI49819.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
          Length = 474

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 137/489 (28%), Positives = 210/489 (42%), Gaps = 56/489 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--RQHGISARQSH---FI 61
           M   +VW R+DLR+TDN  L  A   ++  VI V+   P+++   ++G      H   F 
Sbjct: 1   MDTAVVWFRDDLRVTDNPTLADAVAAAET-VIPVYTFDPDRYTESEYGPPKTGGHRAVFR 59

Query: 62  YASLLQVQKSLSQKG------------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
             ++  ++ SL  +G            +V +  Q +         D+   Q +       
Sbjct: 60  RQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAG-------ADAVYAQTKPATEERR 112

Query: 110 RQYEINEVRRDK--LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
           R  ++     D    L +R  H +      D +  PP  I +        +TP+RK    
Sbjct: 113 RAADVASALDDAGIALRQRWTHTLYHP---DDLPTPPTDIDD-------TFTPWRKETEA 162

Query: 168 NLVQADLRS----LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKF 222
                D RS    +P P     GPV         + P      + F  GE      +  +
Sbjct: 163 AATVRDPRSAPETVPTPDGLTPGPVPTVESLGVSEPPTDDRAVLEFEGGESAGKRRVESY 222

Query: 223 CKEKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
             E  +   Y   +  +     +S+ SP+L+ G LSPR   +R  E + D  +      +
Sbjct: 223 IWEGDHLREYKTTRNGLLGADYSSKFSPWLAAGCLSPRWL-HREVERYEDERVA-NEDTY 280

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
             + EL WR+F++     Y +    KP       I+W++D  L + W  G TG P +DA 
Sbjct: 281 WLVFELAWRDFFQFQFEKYGATFF-KPGGIRERNIDWDRDRALFERWADGETGVPFVDAN 339

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR+LN  G+M NR R   ASFL   L +DWR G  YF ++L+D D+ASN G W + A  G
Sbjct: 340 MRELNRTGYMSNRGRQNVASFLAGVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAGVG 399

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLS 453
           NDS    R F+   Q +R+D    +I  WLPEL  +P    H P    +        +L 
Sbjct: 400 NDSRD--RYFDVRSQAERYDSDAEYITTWLPELAALPATIAHQPWQLSEAEQREYGVELG 457

Query: 454 LNYPLPIVD 462
           ++YP P+VD
Sbjct: 458 VDYPEPVVD 466


>gi|254372340|ref|ZP_04987831.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570069|gb|EDN35723.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3549]
          Length = 499

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 132/485 (27%), Positives = 224/485 (46%), Gaps = 35/485 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127
              L++ G            D++E  +    +  +  ++ +++   N   +RD  LEK  
Sbjct: 59  NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNNWTYQRDIKLEKFF 114

Query: 128 QHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +   I   + + + V+         AL        + + + + +++A  +   +   ++ 
Sbjct: 115 KQNNIVWHQPYQNGVVRCLADRDKWAL-------LWHQRMSEKIIRAPTKLKFICENQIK 167

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
            P T  ++   +D  ++        G   AL IL  F  ++   Y ++   P  A +  S
Sbjct: 168 IP-TAESLGLEYDNCYKRQKG----GRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCS 222

Query: 244 QLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           +LSPY++ GV+S ++ +       N +KE  V    K  S   S+L+ L W   +   + 
Sbjct: 223 RLSPYIAFGVISLKEIYQKANQRKNEIKESRVKNKTKWLSAMRSFLSRLRWHCHFMQKLE 282

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             PS+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +
Sbjct: 283 DQPSIEYENLHSAYDQLRTEQLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAM 342

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q  
Sbjct: 343 LMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSI 400

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             DP G FIR WLPEL NV ++ IH P  WL+K++ SL+YP PI+D K+A     +  Y 
Sbjct: 401 DQDPNGEFIRRWLPELENVSSENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIYK 457

Query: 477 AKKQS 481
            +K S
Sbjct: 458 IRKSS 462


>gi|163754253|ref|ZP_02161376.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
           algicida OT-1]
 gi|161326467|gb|EDP97793.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
           algicida OT-1]
          Length = 432

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 129/435 (29%), Positives = 208/435 (47%), Gaps = 29/435 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYASL 65
           LVW RNDLRI D  +L  A    ++ V+AV+   P  + +           ++ F+  ++
Sbjct: 6   LVWFRNDLRIHDQVSLVKAA-KENSFVMAVYCFDPRHFEKDRFGFVKTGKYRAQFLIETV 64

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +Q  L++  I    H    F+   + +  Y    +VT ++  +++   EV     ++K
Sbjct: 65  SDLQNQLNELNIPLFVH----FEKPEKVVSEYVKIHKVTSVYSQKEWTSEEVAVSSAVKK 120

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-VPAIRL 184
            L + V      D  L  P  I     ++ +V+T FRK   +    A +R L  +  +  
Sbjct: 121 ALSNEVNWVESYDQFLFHPEDIPMTIDKIPQVFTVFRKKCEK---YAQIRELETISKMPE 177

Query: 185 TGPVTP-SNIPRFFDYPFQAID----PMFPI--GEQNALHILRKFC--KEKVYYYVEQRD 235
              VT  + +P   D    A +      FP   GE  AL  L+ +    +K+ YY + R+
Sbjct: 178 KNRVTHLTKVPTLHDLGLPAFEQDTRTAFPFKGGETAALQRLQDYAWNTKKLSYYKKTRN 237

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            +     +S+ S +L+ G LSPR  ++ +K+ +   +IK +S  +  + ELIWR+F++++
Sbjct: 238 GLVGTAYSSKFSAWLANGSLSPRMIYHEVKK-YESEIIKNQS-TYWMIFELIWRDFFKYI 295

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              + +       I   +  EWN DS L+Q W  G T  P ++A M +L   GWM NR R
Sbjct: 296 SLKHGNNIFKLEGIL-HKAYEWNTDSKLIQQWIDGETAAPFVNANMLELKHTGWMSNRGR 354

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
              AS+  K L +DWRIG  YF S L+D D+ SN G W + +  GND  P  R FN  +Q
Sbjct: 355 QNVASYFAKTLELDWRIGAAYFESLLIDYDVHSNYGNWLYVSGVGND--PRNRTFNVKLQ 412

Query: 415 GKRFDPQGTFIRHWL 429
            +R+D    F   WL
Sbjct: 413 AERYDANKKFQNLWL 427


>gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 562

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/263 (37%), Positives = 133/263 (50%), Gaps = 22/263 (8%)

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK--PKSGAFSWLNELIWREFYR 292
           D+     T+ LSPY+  G +SPR  ++ L         K  P     S + +L+WREFY 
Sbjct: 294 DMLMTPSTTALSPYMKFGCVSPRVFYHELNAVLAKFEGKGQPSQPPVSLMGQLMWREFYY 353

Query: 293 HLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            + A  P+     G P      +I WNKD  L  AW+   TGFP IDAAM QL   GW+H
Sbjct: 354 LVGAGTPNFDKMEGNPIC---RQIPWNKDRELFAAWENAQTGFPWIDAAMTQLRLEGWIH 410

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL V W  G + F   L+D D A NNG W W  S       YFR++
Sbjct: 411 HLARHAVACFLTRGDLFVHWEWGRDTFDRDLVDADWALNNGNWMW-LSCSCFFYQYFRVY 469

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIV 461
            P    K++D  G +++H+LP L N+P +Y++ P  WL   D        + ++YP PIV
Sbjct: 470 GPHSFAKKYDKDGAYVKHYLPVLKNMPAKYVYEP--WLAPLDVQKKAGCVVGVDYPAPIV 527

Query: 462 DH---KKACHHTLNQYYAAKKQS 481
           DH    KAC   +   YAA K +
Sbjct: 528 DHATASKACIDKIATAYAAHKDA 550


>gi|297812689|ref|XP_002874228.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297320065|gb|EFH50487.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 566

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 128/468 (27%), Positives = 221/468 (47%), Gaps = 51/468 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQS 58
               + ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A + 
Sbjct: 80  NGKGITILWFRNDLRVLDNDALYKAWSSSDT-LLPVYCLDPRLFHTTHFFNFPKTGALRG 138

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L+ ++K+L ++G+              E L S         +F +++    E+ 
Sbjct: 139 GFLMECLVDLRKNLMKRGLNLLIRSGK----PEEILPSLAKDFGAHTVFAHKETCSEELH 194

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNH-------ALQMYKVYTPFRKAL-----I 166
            ++L+ + L+        +    L  GS + H          +  VYT FRK++     I
Sbjct: 195 VERLVNQGLKGVGNGTKLE----LIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSI 250

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL--HILRKFCK 224
           ++  +  L   P+P++   G V    + +    P +    M  +G ++A    +   F K
Sbjct: 251 RSSTRIPLSLGPIPSVDDWGDV--PTLEQLGIEPQEVTRGMRFVGGESAGVGRVFEYFWK 308

Query: 225 EKV--YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAF 279
           + +   Y   +  +     +++ SP+L+ G +SPR  +    R ++E V       +  +
Sbjct: 309 KDLLKVYKDTRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV-----ANNSTY 363

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFI----PWTEKIEWNKDSHLLQAWKQGYTGFPI 335
             L ELIWR+++R L     S+  G        P   + +W++D  L ++W+ G TG+P+
Sbjct: 364 WVLFELIWRDYFRFL-----SIKCGNSLFHLGGPRNVQGKWSQDQKLFESWRDGKTGYPL 418

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           IDA M++L T G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + 
Sbjct: 419 IDANMKELYTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYG 478

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           A  GND     R F+   Q + +DP+G ++  WL +L  +P +  H P
Sbjct: 479 AGVGNDPRED-RYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 525


>gi|56707953|ref|YP_169849.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670424|ref|YP_666981.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457035|ref|ZP_03665508.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370442|ref|ZP_04986447.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874757|ref|ZP_05247467.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604445|emb|CAG45479.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320757|emb|CAL08862.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568685|gb|EDN34339.1| hypothetical protein FTBG_00211 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840756|gb|EET19192.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159139|gb|ADA78530.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 499

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 222/487 (45%), Gaps = 39/487 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLASEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE--VRRDKLLEKR 126
              L++ G            D++E  +   +Q+   K  ++ Q   N+   +RD  LEK 
Sbjct: 59  NTELTKLGQSLAIM----LGDAVEIFEQ-LIQKYNIKNVWSHQETWNDWTYQRDIKLEKF 113

Query: 127 LQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            +   I   + + + V+       N AL        + + + + +++A  +   +   ++
Sbjct: 114 FKQNNIVWHQPYQNGVVRCLADRDNWAL-------LWHQHMSEKIIRAPTKLKFICENQI 166

Query: 185 TGPVTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241
             P   S    + D Y  Q        G   AL IL  F  ++   Y ++   P  A + 
Sbjct: 167 KIPTAESLGLEYDDCYKRQKG------GRIRALRILDSFLYQRGCGYTKEMSSPVTAFKS 220

Query: 242 TSQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            S+LSPY++ GV+S ++ +       N +KE  V    K  S   S+L+ L W   +   
Sbjct: 221 CSRLSPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQK 280

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +   PS+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R
Sbjct: 281 LEDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMR 340

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q
Sbjct: 341 AMLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQ 398

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
               DP G FIR WLPEL NV  + IH P  WL+K++ SL+YP P +D K+A     +  
Sbjct: 399 SIDQDPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTIDEKQARKFAADNI 455

Query: 475 YAAKKQS 481
           Y  +K S
Sbjct: 456 YKIRKSS 462


>gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
           CCMP1335]
 gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
           CCMP1335]
          Length = 556

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 151/508 (29%), Positives = 221/508 (43%), Gaps = 71/508 (13%)

Query: 9   VHLVWLRNDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           V + W R  LR+ DN AL    A   ++   +  V+I  P  ++    S  ++ F+   +
Sbjct: 14  VAMHWFRKGLRVHDNPALLHALAITKDTSGPIYPVYIVDPNCYQLLKCSVLRARFLLECI 73

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY--NRQYEINEVRRDKLL 123
             + KSL ++G            D +E L     +  VT + +  +   E   V RD+ +
Sbjct: 74  SDLDKSLRERGSRLYVAT----GDPLEVLPELWKEWGVTHVTHEADETGEPYAVARDEGV 129

Query: 124 EK-RLQHRVICKSFDDSVL-----LPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRS 176
                ++ V    F    L     +P G + N    +  V  P   +  Q L+ + D  +
Sbjct: 130 RSVAKKNGVQVMEFRSETLRPLGNVPGGYVANVGGAVNSV--PSTMSSFQGLLGRIDGGN 187

Query: 177 LPVPAIRLTGPVTPSNIPRFFD-----------YPFQAIDP----MFPIGEQNALHILRK 221
           +P+P   L  P T    P+  D           +P    D     +   GE  AL  L+ 
Sbjct: 188 IPLP---LDAP-TKEEFPQLSDDDDSNKYLPLEHPSDCEDASLTGIVKGGETLALAQLQS 243

Query: 222 FCK---------EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW------NRLKEE 266
                       EK      +   P+   T+ LSPYLS+G LSPR+ W      NR    
Sbjct: 244 TVTARPDWTASFEKPKTSCTEVSTPS---TTVLSPYLSLGCLSPRKAWHAVADANRKASS 300

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLM----AFYPSVCMGKPFIPWTEKIEWNKDSHL 322
            V+    P     S   +L+WR+F   +     A  P         P+   + W+ D  L
Sbjct: 301 KVNKTKPP----VSLHGQLLWRDFNNLIAHSANAQSPGSWGRMQDNPYCRNVPWSSDPKL 356

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLL 381
           L+AWK G TGFP IDA M QL T GW+H+  R   A FL + DL   W +G ++F  +LL
Sbjct: 357 LKAWKDGKTGFPWIDACMAQLRTEGWIHHLGRHAVACFLTRGDLWQSWEMGADHFEGELL 416

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D A NN  W W + +G     YFR ++P    K+ D  G +IR W+PEL  +P +YI+
Sbjct: 417 DADYALNNFNWLWLSCSGF-FYQYFRCYSPVAFQKKNDVNGNYIRKWVPELAGLPAKYIY 475

Query: 442 ----APHSWLDKNDLSL--NYPLPIVDH 463
               AP S L+   + L  NYP PIVDH
Sbjct: 476 EPWKAPSSVLNAAGIKLGDNYPNPIVDH 503


>gi|229918425|ref|YP_002887071.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b]
 gi|229469854|gb|ACQ71626.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b]
          Length = 404

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 132/435 (30%), Positives = 200/435 (45%), Gaps = 50/435 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--RQHGI---SARQSHFIYASL 65
           ++W +NDLR+ D+  L  A H+ D  +   F  +P Q+   ++G+      +  F+  SL
Sbjct: 4   IIWYQNDLRVDDHLPLEEALHHDDP-IEGHFFISPNQFIENRYGVIPLGNERLRFLKESL 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             V  SL   GI F  H        +E LD         +L + R    NE RR+  + K
Sbjct: 63  EDVSGSLDALGIPFYVHVGH----PLETLDP------SDRLLFQRAVGYNERRRENEVMK 112

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           R +     K+F+   L       N   +M  ++T FRKA     V+ D+R   + + + T
Sbjct: 113 RWKG--TYKTFEGFTLFEKED--NPFEKMPFLFTEFRKA-----VEYDVRPRELISRKAT 163

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                   P       Q     FP   GE  A   L  +    +  Y E R+   +  ++
Sbjct: 164 AATREVTFPFSIQEVKQDPRTAFPFKGGELAAKRRLNDYLSVPIRTYKETRNGFGVDDST 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLN-ELIWREFYRHLMAFY 298
           +LS YL+ G LSPR+        F +L    ++   +    WL  EL+WREF++     +
Sbjct: 224 KLSAYLANGSLSPRRV-------FFELEAHERTHGVNESTYWLYFELLWREFFQ-----W 271

Query: 299 PSVCMGKPFIP----WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            ++  GK         +++ +W  D  +++ W++G TG   +DA MR+LN  GWM NR R
Sbjct: 272 VALDQGKKLFRSQGIRSKRKDWRVDPDVVETWRRGETGVDFVDAFMRELNATGWMSNRGR 331

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            I A++  K+L  DWR G  YF S+L+D D+ASN G W + A  GNDS    R FN   Q
Sbjct: 332 QIVANYFAKELKQDWRYGASYFESKLIDYDVASNWGNWAYQAGVGNDSRD--RRFNIERQ 389

Query: 415 GKRFDPQGTFIRHWL 429
              +DP   F   WL
Sbjct: 390 QFTYDPDRAFRNKWL 404


>gi|120437052|ref|YP_862738.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii
           KT0803]
 gi|117579202|emb|CAL67671.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii
           KT0803]
          Length = 438

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 209/446 (46%), Gaps = 27/446 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--RQHGI---SA 55
           M      +  LVW RNDLRI+D++AL  AC NS  K+I ++   P  +   Q G      
Sbjct: 5   MPKKQTTNTGLVWFRNDLRISDHEALTTAC-NSHEKIIGIYCFDPRHYLKDQFGFIKTGK 63

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +S F+  ++ ++QK+L    I     Q    D   E +  Y     V  +++ +++   
Sbjct: 64  FRSKFLIETIEELQKNLETLNIELLVFQEKPEDIIPEIISEYS----VKSVYFQKEWTQE 119

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADL 174
           E   +K + +RL + +   S+    L  P  I  +    + KVYT FRK+  +     +L
Sbjct: 120 EHDVEKEV-RRLVNDIEFNSYYQQFLFHPEDIPFSSFNDIPKVYTEFRKSCEKYSKVREL 178

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPI--GEQNALHILRKF---CKE 225
            +LP P      P   + IP F D      +      FP   GE  A   ++++    K 
Sbjct: 179 VNLPSPLPARNLP-EKAKIPSFKDLGHDDYEKDKRSAFPFKGGEDQAKKRIQEYFWESKN 237

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              Y   + ++     +S+LS +L+ G +S RQ ++ +K+   +  I      +  + EL
Sbjct: 238 LTRYKETRNEMIGANYSSKLSAWLANGSISARQVYHEVKK--FEKEITSNLSTYWLIFEL 295

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           IWR+F++++   + +       I     +EWN D   L+ W  G T +  ++A MR+++ 
Sbjct: 296 IWRDFFKYISLKHANKIFKLGGIQ-NRSLEWNYDKQSLKDWIHGNTKYDFVNANMREISN 354

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R    SF  K+L  DWRIG  YF S L+D D+ SN G W + +  GND  P 
Sbjct: 355 TGFMSNRGRQNVNSFWAKELKQDWRIGAAYFESLLIDYDVHSNWGNWMYNSGVGND--PR 412

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPE 431
            R FN   Q +R+DP   +   WL +
Sbjct: 413 DRKFNIKNQAERYDPNNEYQDLWLKD 438


>gi|115469358|ref|NP_001058278.1| Os06g0661800 [Oryza sativa Japonica Group]
 gi|113596318|dbj|BAF20192.1| Os06g0661800 [Oryza sativa Japonica Group]
          Length = 547

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 141/498 (28%), Positives = 233/498 (46%), Gaps = 59/498 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH- 59
           M+ +    V +VW RNDLR+ DN+A+  A   SDA V+ V+   P       ISA  +H 
Sbjct: 42  MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPR------ISAGSTHY 94

Query: 60  ------------FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107
                       F+   L  ++++L+++G+          D     L S         ++
Sbjct: 95  FGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVY 150

Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP--------GSILNHA-------L 152
            +++    E+  + L+ K L+  VI +    +   P         G+ L H         
Sbjct: 151 AHKETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVN 210

Query: 153 QMYKVYTPFRKAL-----IQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAI 204
            +  VYT FRKA+     ++N  +      P P      + G  T   +        +A 
Sbjct: 211 NLPDVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAE 270

Query: 205 DPM-FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCW 260
             M F  GE  AL  + ++   K+++  Y E R+ +     +++ SP+L+ G LSPR   
Sbjct: 271 KGMHFVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYIC 330

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNK 318
             +K      +    +  +  L ELIWR+++R + A Y +    +G P      + +W++
Sbjct: 331 EEVKRYEKQRIANDST--YWVLFELIWRDYFRFISAKYGNSIFHLGGPR---NVESKWSQ 385

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D  L ++W+ G TG+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F +
Sbjct: 386 DQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 445

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D ASN G W + A  GND     R F+   Q K +DP G ++ +WLPEL ++  +
Sbjct: 446 CLLDYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPDGEYVAYWLPELRSIAKE 504

Query: 439 YIHAPHSWLDKNDLSLNY 456
             + P +   K  + L +
Sbjct: 505 RRNFPGASYIKQVVPLKF 522


>gi|75322263|sp|Q651U1|CRYD_ORYSJ RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|52075904|dbj|BAD45850.1| putative cryptochrome dash [Oryza sativa Japonica Group]
 gi|52077386|dbj|BAD46426.1| putative cryptochrome dash [Oryza sativa Japonica Group]
          Length = 582

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 141/498 (28%), Positives = 233/498 (46%), Gaps = 59/498 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH- 59
           M+ +    V +VW RNDLR+ DN+A+  A   SDA V+ V+   P       ISA  +H 
Sbjct: 77  MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPR------ISAGSTHY 129

Query: 60  ------------FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107
                       F+   L  ++++L+++G+          D     L S         ++
Sbjct: 130 FGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVY 185

Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP--------GSILNHA-------L 152
            +++    E+  + L+ K L+  VI +    +   P         G+ L H         
Sbjct: 186 AHKETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVN 245

Query: 153 QMYKVYTPFRKAL-----IQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAI 204
            +  VYT FRKA+     ++N  +      P P      + G  T   +        +A 
Sbjct: 246 NLPDVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAE 305

Query: 205 DPM-FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCW 260
             M F  GE  AL  + ++   K+++  Y E R+ +     +++ SP+L+ G LSPR   
Sbjct: 306 KGMHFVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYIC 365

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNK 318
             +K      +    +  +  L ELIWR+++R + A Y +    +G P      + +W++
Sbjct: 366 EEVKRYEKQRIANDST--YWVLFELIWRDYFRFISAKYGNSIFHLGGPR---NVESKWSQ 420

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D  L ++W+ G TG+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F +
Sbjct: 421 DQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 480

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D ASN G W + A  GND     R F+   Q K +DP G ++ +WLPEL ++  +
Sbjct: 481 CLLDYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPDGEYVAYWLPELRSIAKE 539

Query: 439 YIHAPHSWLDKNDLSLNY 456
             + P +   K  + L +
Sbjct: 540 RRNFPGASYIKQVVPLKF 557


>gi|308799831|ref|XP_003074697.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
 gi|116000867|emb|CAL50547.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
          Length = 787

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 138/503 (27%), Positives = 222/503 (44%), Gaps = 74/503 (14%)

Query: 11  LVWLRNDLRITDN----KALYAACHNSDAKVIAVFIATPEQWR--QHGIS---ARQSHFI 61
           ++W RNDLR+ DN    +A   A  +SD +V+ V++     ++  + G++   A +  F 
Sbjct: 248 VIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFT 307

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              +  ++ SL   G      +C    D I  L       R T +    +    E   D 
Sbjct: 308 LECVGDLKTSLRALGSDLLV-RCGKSRDVIAELTLTGANDR-TIILTQTEVTSEETEMDV 365

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHA-----------LQMYKVYTPFRKALIQNLV 170
            +E+  + R    +   ++    GS L H              +  V+TPFR  +     
Sbjct: 366 AVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESKCK 425

Query: 171 QADLRSLPVPAIRLTGPVTPSN-----IPRFFDYPFQAIDPM------------------ 207
             D+  +P P     G V  S      +P+  D PF + +                    
Sbjct: 426 VRDV--IPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERSVLD 483

Query: 208 FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           F  GE NAL  ++ +    +++  Y E R+ +     +++L+P+L++G +SPR   + ++
Sbjct: 484 FKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIR 543

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNK 318
             +    ++ KS  +  + ELIWR+F++          F+     G+       +  W +
Sbjct: 544 R-YESERVENKS-TYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGR-------RASWKR 594

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D  +L+AWK G TG+P+IDA MR+L   G+M NR R   AS+L  D  +DWR G ++F  
Sbjct: 595 DEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEH 654

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D ASN G W  AA      +  F I     Q K +DP G +I+ W+ EL  VP  
Sbjct: 655 HLLDYDTASNWGNWCAAAGMTGGRINRFNIAK---QTKDYDPAGEYIKTWVKELAEVPAA 711

Query: 439 YI----HAPHSWLDKNDLSLNYP 457
           YI     AP    D+  + LNYP
Sbjct: 712 YIADPNQAPRELRDR--IGLNYP 732


>gi|260800305|ref|XP_002595074.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
 gi|229280316|gb|EEN51085.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
          Length = 507

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 147/498 (29%), Positives = 224/498 (44%), Gaps = 61/498 (12%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI--SARQSHFIYASLLQVQK 70
           W R  LR  DN +L  A   S   V  V++      ++H I   A    F+   L ++  
Sbjct: 12  WFRKGLRFHDNPSLLHALRTS-RHVYPVYVVDQNWMKEHDIRYGANWWRFVIQCLEELDT 70

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYN-RQYEINEVRRDKLLEK 125
            L + G+     + S  D   E    + + Q      T+ FY  R   + ++  D  +E 
Sbjct: 71  RLRKYGLRLFVVRGSAEDFFKEHFRKWKVTQLTHDVDTEPFYRIRDVAVRKIASDMGVEV 130

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-------ALIQNLVQADLRSLP 178
                      D +V    G+      +  KVY    K       A  ++       +LP
Sbjct: 131 VTHVAHTLYDIDRTVERNGGTPPLTYRKFLKVYNEMGKPPKEKETATTEHFANC---TLP 187

Query: 179 VPAI--RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQR 234
             A+  +    VT   +    D+P +     F  GE  AL  L K  ++K  V  + + +
Sbjct: 188 PEALQDKKFDMVTLEELGMRCDFPAK-----FVGGETEALRRLEKSLEDKDWVLKFEKPK 242

Query: 235 DIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWRE 289
             P   +  T+ LSPY+++G LS R  +++L +    +  K K+ +    S   +LIWRE
Sbjct: 243 TSPNSLLPSTTVLSPYITVGCLSARLFYHQLDK----IYSKAKNHSQPPVSLHGQLIWRE 298

Query: 290 FYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           F+    A  P+        VC+         +I WNK+   L  W+   TGFP IDAAM 
Sbjct: 299 FFYTAAAHTPNFNQMEGNRVCL---------QIPWNKNDEHLTRWRNAQTGFPWIDAAMT 349

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W +++  
Sbjct: 350 QLRKEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSLNAGNWMWLSASAF 409

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSL 454
               YFR+++P + GK+ DP+GTFIRH+LP L N P +YI+    AP +  +K    +  
Sbjct: 410 FH-QYFRVYSPIVFGKKTDPKGTFIRHYLPVLKNFPKEYIYEPWKAPRNVQEKAGCIVGK 468

Query: 455 NYPLPIVDHKKACHHTLN 472
           +YP PIVDHK+A    L+
Sbjct: 469 DYPRPIVDHKEASQRNLD 486


>gi|75320690|sp|Q5IFN2|CRYD_OSTTA RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|51948350|gb|AAU14279.1| CRY DASH-like protein [Ostreococcus tauri]
          Length = 546

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 138/503 (27%), Positives = 222/503 (44%), Gaps = 74/503 (14%)

Query: 11  LVWLRNDLRITDN----KALYAACHNSDAKVIAVFIATPEQWR--QHGIS---ARQSHFI 61
           ++W RNDLR+ DN    +A   A  +SD +V+ V++     ++  + G++   A +  F 
Sbjct: 7   VIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFT 66

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              +  ++ SL   G      +C    D I  L       R T +    +    E   D 
Sbjct: 67  LECVGDLKTSLRALGSDLLV-RCGKSRDVIAELTLTGANDR-TIILTQTEVTSEETEMDV 124

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHA-----------LQMYKVYTPFRKALIQNLV 170
            +E+  + R    +   ++    GS L H              +  V+TPFR  +     
Sbjct: 125 AVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESKCK 184

Query: 171 QADLRSLPVPAIRLTGPVTPSN-----IPRFFDYPFQAIDPM------------------ 207
             D+  +P P     G V  S      +P+  D PF + +                    
Sbjct: 185 VRDV--IPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERSVLD 242

Query: 208 FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           F  GE NAL  ++ +    +++  Y E R+ +     +++L+P+L++G +SPR   + ++
Sbjct: 243 FKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVSEIR 302

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNK 318
             +    ++ KS  +  + ELIWR+F++          F+     G+       +  W +
Sbjct: 303 R-YESERVENKS-TYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGR-------RASWKR 353

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D  +L+AWK G TG+P+IDA MR+L   G+M NR R   AS+L  D  +DWR G ++F  
Sbjct: 354 DEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEH 413

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D ASN G W  AA      +  F I     Q K +DP G +I+ W+ EL  VP  
Sbjct: 414 HLLDYDTASNWGNWCAAAGMTGGRINRFNIAK---QTKDYDPAGEYIKTWVKELAEVPAA 470

Query: 439 YI----HAPHSWLDKNDLSLNYP 457
           YI     AP    D+  + LNYP
Sbjct: 471 YIADPNQAPRELRDR--IGLNYP 491


>gi|222636034|gb|EEE66166.1| hypothetical protein OsJ_22248 [Oryza sativa Japonica Group]
          Length = 547

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 141/498 (28%), Positives = 232/498 (46%), Gaps = 59/498 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH- 59
           M+ +    V +VW RNDLR+ DN+A+  A   SDA V  V+   P       ISA  +H 
Sbjct: 42  MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VFPVYCVDPR------ISAGSTHY 94

Query: 60  ------------FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107
                       F+   L  ++++L+++G+          D     L S         ++
Sbjct: 95  FGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVY 150

Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP--------GSILNHA-------L 152
            +++    E+  + L+ K L+  VI +    +   P         G+ L H         
Sbjct: 151 AHKETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVN 210

Query: 153 QMYKVYTPFRKAL-----IQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAI 204
            +  VYT FRKA+     ++N  +      P P      + G  T   +        +A 
Sbjct: 211 NLPDVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAE 270

Query: 205 DPM-FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCW 260
             M F  GE  AL  + ++   K+++  Y E R+ +     +++ SP+L+ G LSPR   
Sbjct: 271 KGMHFVGGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYIC 330

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNK 318
             +K      +    +  +  L ELIWR+++R + A Y +    +G P      + +W++
Sbjct: 331 EEVKRYEKQRIANDST--YWVLFELIWRDYFRFISAKYGNSIFHLGGPR---NVESKWSQ 385

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D  L ++W+ G TG+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F +
Sbjct: 386 DQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 445

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D ASN G W + A  GND     R F+   Q K +DP G ++ +WLPEL ++  +
Sbjct: 446 CLLDYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPDGEYVAYWLPELRSIAKE 504

Query: 439 YIHAPHSWLDKNDLSLNY 456
             + P +   K  + L +
Sbjct: 505 RRNFPGASYIKQVVPLKF 522


>gi|255066743|ref|ZP_05318598.1| deoxyribodipyrimidine photolyase [Neisseria sicca ATCC 29256]
 gi|255049071|gb|EET44535.1| deoxyribodipyrimidine photolyase [Neisseria sicca ATCC 29256]
          Length = 463

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 137/477 (28%), Positives = 206/477 (43%), Gaps = 72/477 (15%)

Query: 6   AMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           AM  H LVW R +LRI DN AL AA       V  V++A   Q      + RQ  F Y +
Sbjct: 36  AMQAHTLVWFRRNLRIRDNAALSAAVKRG-LPVAGVWVA---QGSSEIPNPRQDWFHYQA 91

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
              +  SL+ +G+           + +E L +   +  V  +  +  Y  +E+ +D  + 
Sbjct: 92  AAALHGSLAARGVALYAV------NRVEELPALATRLNVQTVIADEAYTSSEIGQDNRIW 145

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L +  V  +  +D  +     I+      Y  +  +++A +    Q           R
Sbjct: 146 RILDEQGVAFERVNDRAIFAKADIMGSHGAPYTDFPHYKEAWLVLFRQ-----------R 194

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILR----------KFCKEKVYYYV 231
             G          F      + P FP   G+Q+ +   R          +  +E + +Y 
Sbjct: 195 FGGQDVGGGRAEIFQTTSVEM-PSFPAWNGQQDMVSAQRGGEDEAGKQWQHFEENIGFYP 253

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
             +D PA +GTS+LS YLS G +SPR        +          GA +WL+ LI R+FY
Sbjct: 254 IMKDFPARKGTSRLSAYLSAGCISPRVLATEASGQ----------GADAWLDNLIQRDFY 303

Query: 292 RHLMAFY------PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           + L A++       S     PF              L + W+QG TGFP+IDAAMR L +
Sbjct: 304 QQL-AYHRARIEPESAAESAPF-----------SDDLTERWRQGETGFPLIDAAMRSLKS 351

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GW+H  LR +TA FL   L      G  +F +Q  D D A N G WQ AA        +
Sbjct: 352 SGWLHPALRSLTAEFLCGVLHQPSEHGIVWFATQQTDFDPALNEGNWQTAARNA-----H 406

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIV 461
            R  +     +R DP GTF+R  +PEL ++P   +H P  WL  +++    YP P+V
Sbjct: 407 RRSIDIIQTARRLDPDGTFVRRHIPELAHLPVNLVHTP--WLASSEIDAHGYPPPVV 461


>gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 559

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 127/252 (50%), Gaps = 16/252 (6%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           T+ LSPYL  G +SPR  ++ LK+   D   K  +   S   +L+WREFY +L AF    
Sbjct: 299 TTALSPYLKFGCVSPRTFYHELKDVLNDAKGKHSAPPVSLEGQLLWREFY-YLAAFGTPN 357

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                  P   +I W  D   L AW++G TGFP IDA M QL   GW+H+  R   A FL
Sbjct: 358 YHKMEGNPICRQIPWTWDEERLAAWEEGRTGFPWIDACMHQLRQEGWLHHLARHAVACFL 417

Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            + DL V W  G + F   L+D D A N G W W  S       YFR++ P   GK++D 
Sbjct: 418 TRGDLFVHWEAGAKVFDRDLVDADPALNYGNWMW-LSCSCFFYQYFRVYGPVSFGKKYDK 476

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDH---KKACHH 469
            GTFIR +LP L ++P +YI+ P  W    D        + ++YP PIVDH    K C  
Sbjct: 477 DGTFIRKYLPVLKDMPAKYIYEP--WTAPADVQKKAGCVIGVDYPPPIVDHAVASKECIE 534

Query: 470 TLNQYYAAKKQS 481
            L   Y A K  
Sbjct: 535 KLAVAYKAHKDG 546



 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 5  TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
          T  S+H  W R  LR+ DN AL  AC ++ A V  +F+  P       + A +  F+  S
Sbjct: 7  TTRSIH--WFRKGLRVHDNPALVDACADATA-VQPIFVLDPWFLTPSRVGANRVRFLLQS 63

Query: 65 LLQVQKSLSQKG 76
          L  +  SL  +G
Sbjct: 64 LTDLDASLRARG 75


>gi|86134106|ref|ZP_01052688.1| cryptochrome, DASH family [Polaribacter sp. MED152]
 gi|85820969|gb|EAQ42116.1| cryptochrome, DASH family [Polaribacter sp. MED152]
          Length = 436

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 203/441 (46%), Gaps = 31/441 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLL 66
           +  L+W RN+LR  DN ++  A  N D KVIA++   P+ +++      + + F    LL
Sbjct: 7   TTGLIWFRNNLRTQDNTSIQKAIQNHD-KVIAIYFFDPKYFKEDEFGFQKTAKFRAQFLL 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +    L Q+         + FD     L +     +V  ++  +++   E+  +KL+ K 
Sbjct: 66  ETITDLKQQLKDLNITLLTYFDAPENQLLNITETYKVDTIYTQKEWTKEELDTNKLVLKT 125

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQADLRS----- 176
           +   V      D  L  P ++ N+   +  V+T FRK L     IQ  +  D        
Sbjct: 126 MSDTVNFVEDYDQFLYHPETVSNNFSNIPNVFTQFRKKLEKYVKIQEEILIDKHDDSNLI 185

Query: 177 ---LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYV 231
                +P+++  G      +P+   +PF+        GE  AL  L  +  E  KV +Y 
Sbjct: 186 HNPTEIPSLKELG-FNDFVMPKKSAFPFKG-------GETAALERLNYYLFESKKVGFYK 237

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           + R+ +     +++ SP+L+ G LS R  + ++K+   +         +  + ELIWR++
Sbjct: 238 KTRNGLVGTDYSTKFSPWLANGSLSARTIYYQIKK--YEAEFGSNQSTYWVIFELIWRDY 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           ++++   Y         I      +WN D + +Q W  G T    ++A M +L   GWM 
Sbjct: 296 FKYISLKYGYEIFKIGGIL-ERNYQWNVDKNCIQDWINGNTKDDFVNANMIELKETGWMS 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   AS+  K+LL DWRIG  YF S LLD D+ SN G W + A  GND  P  R FN
Sbjct: 355 NRGRQNVASYFAKELLQDWRIGAAYFESLLLDYDVHSNYGNWMYVAGVGND--PRDRKFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPE 431
             +Q +R+D    F + WL +
Sbjct: 413 TQLQAERYDANHKFRKLWLEK 433


>gi|257053657|ref|YP_003131490.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
 gi|256692420|gb|ACV12757.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
          Length = 478

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 142/489 (29%), Positives = 226/489 (46%), Gaps = 51/489 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----------GISARQSH 59
           +VWLR DLR  DN  L AAC     +V+ V+   P ++ Q            G+ A ++ 
Sbjct: 6   VVWLRRDLRTRDNATLAAACAAD--RVLPVYCFEPRRYGQRAFGGAASFEYDGVGAGRAQ 63

Query: 60  FIYASLLQVQKSLSQKGI-VFQYHQCSN--FDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           F   ++  ++  L + G  +F  H   +    D +E +D+  L  +   +   R  E ++
Sbjct: 64  FEREAVGDLRDRLREIGSDLFVRHGRPDAVLPDLVEAVDADHLHYQTLPIPEERTRE-HQ 122

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-IQNLVQADLR 175
           VRR  L E     R    +      LP         +M   +TP+R+++  ++ V+  + 
Sbjct: 123 VRR-ALPEAVTVERHWTHTLHHVEDLP-----TPYDEMPDTFTPWRQSVEAESRVREPIE 176

Query: 176 SLPVPAIRLTGPVTPSNIPRFFD------YPFQAIDPM-FPIGEQNALHILRKFCKEKVY 228
           +  VP +    P  P  IP   D       P     P+ F  GE      L ++  E   
Sbjct: 177 APAVPPVPADAP-QPGPIPELADLGVVGDVPDDDRMPLDFEGGETPGQRRLEQYVWETDS 235

Query: 229 YYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-E 284
               ++    + G   +S+ SP+ ++G LSPR  +  +KE   + +    + +  WLN E
Sbjct: 236 LRAYKQTRNGLVGRDYSSKFSPWQNVGCLSPRDVYQTVKEYERERV---SNDSTYWLNFE 292

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WR+F++   A Y         I     ++W +D    + W++G TG P +DAAMR+L 
Sbjct: 293 LRWRDFFQFQFAKYGGKFFTPGGIRERTDLDWRRDESDFRRWQEGRTGVPFVDAAMRELV 352

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G++ NR R   ASFLV DL +DWR G  ++   LLD D ASN G W + A  GNDS  
Sbjct: 353 ATGYVSNRARQNAASFLVHDLGIDWRWGGAHYEHHLLDYDPASNYGNWAYIAKVGNDSRE 412

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKND-------LSLNY 456
               F+   Q +R+DP G +I  W PEL+ +  +Y   P  W +D+ +       L  +Y
Sbjct: 413 GG--FDVLSQAERYDPGGEYISRWCPELDGLIAEYAREP--WRMDEEEQRERGLVLGEDY 468

Query: 457 PLPIVDHKK 465
           P P+VD ++
Sbjct: 469 PEPMVDPER 477


>gi|238757987|ref|ZP_04619168.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236]
 gi|238703741|gb|EEP96277.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236]
          Length = 120

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/114 (62%), Positives = 83/114 (72%)

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           ++DWR GE YFM+QL+DG LA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 1   MIDWREGERYFMAQLIDGSLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGAFI 60

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL  VP   IH P  W D+    L+YPLP+VDHK A   TL  +  AK+
Sbjct: 61  RRWLPELAAVPDSDIHQPWRWADRQQRHLDYPLPLVDHKLARLATLAAFETAKR 114


>gi|218198696|gb|EEC81123.1| hypothetical protein OsI_24002 [Oryza sativa Indica Group]
          Length = 547

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 140/498 (28%), Positives = 231/498 (46%), Gaps = 59/498 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH- 59
           M+ +    V +VW RNDLR+ DN+A+  A   SDA V+ V+   P       ISA  +H 
Sbjct: 42  MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPR------ISAGSTHY 94

Query: 60  ------------FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107
                       F+   L  ++++L+++G+          D     L S         ++
Sbjct: 95  FGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVY 150

Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP--------GSILNHA-------L 152
            +++    E+  + L+ K L+  VI +    +   P         G+ L H         
Sbjct: 151 AHQETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVN 210

Query: 153 QMYKVYTPFRKAL-----IQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAI 204
            +  VYT FRKA+     ++N  +      P P      + G  T   +        +A 
Sbjct: 211 NLPDVYTQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAE 270

Query: 205 DPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCW 260
             M F  GE  AL  + ++  +K    V ++    + G   +++ SP+L+ G LSPR   
Sbjct: 271 KGMHFVGGESAALGRVHEYFWKKDQLKVYKKTRNGMLGPDYSTKFSPWLASGSLSPRYIC 330

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNK 318
             +K      +    +  +  L ELIWR+++R + A Y +    +G P      + +W++
Sbjct: 331 EEVKRYEKQRIANDST--YWVLFELIWRDYFRFISAKYGNSIFHLGGPR---NVESKWSQ 385

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D  L ++W+ G TG+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F +
Sbjct: 386 DQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 445

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D ASN G W + A  GND     R F+   Q K +DP G ++ +WLPEL ++  +
Sbjct: 446 CLLDYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPDGEYVAYWLPELRSIAKE 504

Query: 439 YIHAPHSWLDKNDLSLNY 456
             + P +   K  + L +
Sbjct: 505 RRNFPGASYIKQVVPLKF 522


>gi|118496971|ref|YP_898021.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           novicida U112]
 gi|194324200|ref|ZP_03057974.1| deoxyribodipyrimidine photolyase family protein [Francisella
           tularensis subsp. novicida FTE]
 gi|118422877|gb|ABK89267.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
 gi|194321647|gb|EDX19131.1| deoxyribodipyrimidine photolyase family protein [Francisella
           tularensis subsp. novicida FTE]
          Length = 499

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 221/487 (45%), Gaps = 39/487 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
              L++ G  ++          D++E  +    Q  +  ++ +++   N   +RD  LEK
Sbjct: 59  NTELTRLGQPLILM------IGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEK 112

Query: 126 RLQHRVICKSFDDSVLLPP--GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             +   I       V   P    ++ H     K    + K + + +V+A    L      
Sbjct: 113 FFKQNNI-------VWHQPYQNGVVRHLADRDKWALVWHKRVSEKIVEAP-NKLKFICEN 164

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241
            T   T  +I   +D  ++        G   AL IL  F  ++   Y ++   P  A + 
Sbjct: 165 QTKIPTAESIGLEYDNCYKRQKG----GRVRALRILDSFLYQRGCGYTKEMSSPVTAFKS 220

Query: 242 TSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHL 294
            S+LSPY++ G +S R+ +   N+ K+E     IK K    S   S+L+ L W   +   
Sbjct: 221 CSRLSPYIAFGAISIREVYQLANQRKKEIKVSSIKNKTKWLSAMRSFLSRLRWHCHFMQK 280

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +   PS+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R
Sbjct: 281 LEDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMR 340

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q
Sbjct: 341 AMLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQ 398

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
               DP G F R WLPEL NV  + IH P  WL+K++ +++YP PI+D K+A     +  
Sbjct: 399 SIDQDPNGEFTRRWLPELENVSNENIHTP--WLEKHN-AIDYPDPIIDEKQARKFAADNI 455

Query: 475 YAAKKQS 481
           Y  +K S
Sbjct: 456 YKIRKSS 462


>gi|208780423|ref|ZP_03247764.1| deoxyribodipyrimidine photolyase family protein [Francisella
           novicida FTG]
 gi|208743791|gb|EDZ90094.1| deoxyribodipyrimidine photolyase family protein [Francisella
           novicida FTG]
          Length = 499

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 222/487 (45%), Gaps = 39/487 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE--VRRDKLLEKR 126
              L++ G            D++E  +   +Q+   K  ++ Q   N+   +RD  LEK 
Sbjct: 59  NTELTKLGQSLAIM----LGDAVEIFEQ-LIQKYNIKNVWSHQETWNDWTYQRDIKLEKF 113

Query: 127 LQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            +   I   + + + V+         AL        + + + + +++A  +   +   ++
Sbjct: 114 FKQNNIVWHQPYQNGVVRCLADRDKWAL-------LWHQRMSEKIIRAPTKLKFICESQI 166

Query: 185 TGPVTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241
             P   S    + D Y  Q        G   AL IL  F  ++   Y ++   P  A + 
Sbjct: 167 KIPTAESLGLEYDDCYKRQKG------GRIRALRILDSFLYQRGCSYTKEMSSPVTAFKS 220

Query: 242 TSQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            S+LSPY++ GV+S ++ +       N +KE  V    K  S   S+L+ L W   +   
Sbjct: 221 CSRLSPYIAFGVISLKEIYQKANQRKNEIKESRVKNKTKWLSAMRSFLSRLRWHCHFMQK 280

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +    S+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R
Sbjct: 281 LEDQRSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMR 340

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q
Sbjct: 341 AMLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQ 398

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
               DP G FIR WLPEL NV ++ IH P  WL+K++ SL+YP PI+D K+A     +  
Sbjct: 399 SIDQDPNGEFIRRWLPELENVSSENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNI 455

Query: 475 YAAKKQS 481
           Y  +K S
Sbjct: 456 YKIRKSS 462


>gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis]
 gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis]
          Length = 621

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 144/501 (28%), Positives = 223/501 (44%), Gaps = 61/501 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP--EQWRQHGISARQSHFIYASLLQV 68
           ++W R  LR+ DN AL  AC  + A V  VFI  P   Q   + +   + +F+  SL  +
Sbjct: 8   ILWFRKGLRLHDNPALLEACRGA-AHVYPVFILDPFFLQQSSYKVGVNRYNFLLESLRDL 66

Query: 69  QKSLSQKG---IVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
             S   +G   +V +      F     EW        R+T+L +    E++     ++ +
Sbjct: 67  DASFRSRGSRLLVLRGKPEEVFPRVFREW--------RITQLCF----EVDTEPYARVRD 114

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHAL--QMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            R+Q         D   +   + ++H L   ++   T  R   +           P P  
Sbjct: 115 ARIQ------GLADEAGVAVWTAVSHTLYVGLFCSCTAGRHGPVLGGCWLWKEKAPAPGG 168

Query: 183 RLTGPV---TPSN------IPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVY---Y 229
           R  GP     PS       +P + +  F +A   +F  GE  AL  L     +  +   +
Sbjct: 169 R-RGPACENAPSTDAATTAVPTWQEVGFTEAPTTIFKGGETEALKRLSASLADSKWVADF 227

Query: 230 YVEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
                D  A +   T+ LSPY+  G LSPR    RL E +       +    S   +L+W
Sbjct: 228 KKPDTDPAAFERPATTVLSPYVKFGCLSPRLFHARLLEVYRRHRGHSQP-PVSLRGQLLW 286

Query: 288 REFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           REF+  + A  P+     G P     ++I+W+ D  LL AW++  TGFP IDA M QL  
Sbjct: 287 REFFYTVGAHTPNFHRMDGNPLC---KQIDWDDDEELLAAWREARTGFPWIDAIMTQLRQ 343

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GWMH+  R   A FL + DL V W  G + F   L+D D   N   W W +++   S  
Sbjct: 344 WGWMHHLARHSVACFLTRGDLYVSWERGMQVFEELLIDQDHYLNAANWMWLSASAFFSQ- 402

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNY 456
           YFR+++P   GK++DP+G FIR +LP L ++P++YI+ P  W   ++        +  +Y
Sbjct: 403 YFRVYSPISFGKKYDPEGKFIRKFLPVLKDMPSKYIYEP--WTAPSEVQRRAGCVIGRDY 460

Query: 457 PLPIVDHKKACHHTLNQYYAA 477
           P P+VDH       + +  AA
Sbjct: 461 PHPVVDHALVSKQNIARMAAA 481


>gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri]
          Length = 559

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 133/255 (52%), Gaps = 16/255 (6%)

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           I  T+ LSPY+  G +SPR  ++ L   + +L  K      S + +L+WREFY +L+A  
Sbjct: 297 IPSTTALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWREFY-YLVAAG 355

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                         +I W KD  L  AW+   TGFP IDAAM QL   GW+H+  R   A
Sbjct: 356 TKNFDKMEGNAICRQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLHHLARHAVA 415

Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            FL + DL + W  G + F   L+D D A NNG W W + +      YFR+++P    K+
Sbjct: 416 CFLTRGDLFIHWEWGRDAFDRDLVDADWALNNGNWMWLSCSAF-FYQYFRVYSPIAFAKK 474

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKA--- 466
           +D  G ++RH+LP L N+P++Y++ P  WL   D        + ++YP PIVDH  A   
Sbjct: 475 YDKDGQYVRHYLPVLKNMPSKYVYEP--WLAPLDVQKKAGCVVGVDYPAPIVDHSAASKR 532

Query: 467 CHHTLNQYYAAKKQS 481
           C   +   YAA K +
Sbjct: 533 CVDDIATAYAAHKDA 547


>gi|238828068|pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
          Length = 525

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/464 (27%), Positives = 219/464 (47%), Gaps = 46/464 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSH 59
              V ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +  
Sbjct: 39  GKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALRGG 97

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+   L+ ++K+L ++G+              E L S         +F +++    EV  
Sbjct: 98  FLMECLVDLRKNLMKRGLNLLIRSGK----PEEILPSLAKDFGARTVFAHKETCSEEVDV 153

Query: 120 DKLLE---KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQNLVQ 171
           ++L+    KR+ +    +    S +     +      +  VYT FRK++     I++  +
Sbjct: 154 ERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTR 213

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF----CKEKV 227
             L   P P++   G V    + +    P +    M  +G ++A  + R F     K+ +
Sbjct: 214 IPLSLGPTPSVDDWGDV--PTLEKLGVEPQEVTRGMRFVGGESA-GVGRVFEYFWKKDLL 270

Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLN 283
             Y E R+ +     +++ SP+L+ G +SPR  +    R ++E V       +  +  L 
Sbjct: 271 KVYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV-----ANNSTYWVLF 325

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFI----PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           ELIWR+++R L     S+  G        P     +W++D  L ++W+   TG+P+IDA 
Sbjct: 326 ELIWRDYFRFL-----SIKCGNSLFHLGGPRNVNGKWSQDQKLFESWRDAKTGYPLIDAN 380

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           M++L+T G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A   
Sbjct: 381 MKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVN 440

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           +      R F+   Q + +DP+G ++  WL +L  +P +  H P
Sbjct: 441 DPRED--RYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 482


>gi|224121408|ref|XP_002330820.1| predicted protein [Populus trichocarpa]
 gi|222872622|gb|EEF09753.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  157 bits (397), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 142/533 (26%), Positives = 233/533 (43%), Gaps = 72/533 (13%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------I 53
           M         +VW RNDLR+ DN+ L+ A  NS++ V+ V+   P  ++           
Sbjct: 28  MVKRNGKGAAIVWFRNDLRVLDNEVLFKAWVNSES-VLPVYCVDPRLFQASTCYFGFPKT 86

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
              +  FI   L+ ++K+L ++G+              E + +         ++  ++  
Sbjct: 87  GGLRGQFIVECLVDLKKNLMKRGLNLLIRH----GKPEEIIPALAKDFASHTVYAQKETC 142

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ------MY------------ 155
             EV  +KL+ K L+   +  S   S     GS  +  LQ      MY            
Sbjct: 143 SEEVNVEKLVSKALRRVHLPHSTGRST--SQGSANSPTLQLVWGGTMYHLDDLPFSTNSI 200

Query: 156 -KVYTPFRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPS--------NIPRFFDYPF 201
             VYT FRK++     I++  +  +   P P +   G V PS            F  Y  
Sbjct: 201 PDVYTQFRKSVEARCSIRSCAKISMSLGPAPRVEDWGCV-PSIEQLGLQPQEAGFMFYLH 259

Query: 202 QAIDPMFPIGEQNALH--------------ILRKFCKEKVYYYVEQRD-IPAIQGTSQLS 246
            +    F  GE  AL                L   C + +  Y E R+ +     +++ S
Sbjct: 260 VSKGMRFLGGETAALSRVYEYFWKKASGNCFLLSLCLDFLKIYKETRNGMLGPDYSTKFS 319

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L+ G LSPR  +  +K      L    +  +  L ELIWR+++R  ++F     +   
Sbjct: 320 PWLASGSLSPRFIYEEVKRYEKGRLANDST--YWVLFELIWRDYFR-FISFKYGNSIFHI 376

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P   +  W++D  L  +W+ G TG+P+IDA M++L+  G+M NR R I  SFLV+D+ 
Sbjct: 377 GGPRNVERRWSQDQRLFDSWRNGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMG 436

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+G E+F + LLD D  SN G W + A  GND     R F+   Q + +DP+G ++ 
Sbjct: 437 IDWRMGAEWFETFLLDYDPCSNYGNWTYGAGVGNDPRED-RYFSIPKQAQTYDPEGEYVA 495

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +WLP+L  +P +  + P        L +   +P+       H   ++  AA+K
Sbjct: 496 YWLPQLQELPKEKRNFP------GKLYMEQIVPLKFGNPNGHRGQDRASAARK 542


>gi|254438241|ref|ZP_05051735.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
           307]
 gi|198253687|gb|EDY78001.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
           307]
          Length = 511

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 130/476 (27%), Positives = 213/476 (44%), Gaps = 41/476 (8%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A +  +VW + DLRI D+  L  A   S+A +I ++I  PE W+Q   S R  HFI+  L
Sbjct: 2   AQTPRIVWFKRDLRINDHGPLLTASQ-SNAPIIPLYIVEPEYWKQPFASRRHWHFIHDCL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLE 124
             +  +L++ G     +      D+ E +    L+  V+ ++ + +   +   +RD  +E
Sbjct: 61  CDLDSALAEMG----QNLIVKVGDACEVIKELHLEHHVSDVYAHEETGNLWTYKRDIAVE 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-VPAIR 183
           K      +C +   ++   P + +   L+    ++  R A +   +      LP  P+ R
Sbjct: 117 K------LCLNDGIALHTSPTNGVVRRLRSRDDWSKIRNARMAEKILPKPNMLPSFPSCR 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-- 241
            +  +   N P F D P   +      G + A+  LR F   +   Y+     P +    
Sbjct: 171 -SDVLPAKNGPIFCDIPIGTVQKG---GRKQAVADLRSFLNYRSREYLYHISAPDLSEFH 226

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG------AFSWLNELIWREFYRHLM 295
            S+LS +L+ G LS R+    + +    L    K        AF   + L WR  +   +
Sbjct: 227 CSRLSAHLAWGTLSVREVAQSIIKRRSQLSPDEKKSFGRNLTAFG--SRLAWRCHFVQKI 284

Query: 296 AFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
              P +   CM   F    E  + + D H  QAW +G TG+P +DA MR L   GW+  R
Sbjct: 285 EDQPEIETHCMHPAFEGLRE--DEHNDLHF-QAWARGQTGYPFVDACMRNLTAEGWITFR 341

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +R +  SF    L +DWR+  ++      D +   +    Q    +G   +   R++NP 
Sbjct: 342 MRAMLVSFASYQLWLDWRVTGDHLARLFTDYEPGIHYS--QLQMQSGVTGINTMRVYNPI 399

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIVD 462
            Q    DP G+FIR W+PEL NVP ++IH P  W    +D  D +L  +YP PI++
Sbjct: 400 KQSMEHDPSGSFIRKWVPELKNVPDEFIHEPWKWKKTLIDNCDFTLGQDYPEPIIE 455


>gi|134302253|ref|YP_001122222.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050030|gb|ABO47101.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 499

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 136/487 (27%), Positives = 221/487 (45%), Gaps = 39/487 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I   E W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLASEKGD--ILPLYIIELELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE--VRRDKLLEKR 126
              L++ G            D++E  +   +Q+   K  ++ Q   N+   +RD  LEK 
Sbjct: 59  NTELTKLGQSLAIM----LGDAVEIFEQ-LIQKYNIKNVWSHQETWNDWTYQRDIKLEKF 113

Query: 127 LQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            +   I   + + + V+       N AL        + + + + +++A  +   +   ++
Sbjct: 114 FKQNNIVWHQPYQNGVVRCLADRDNWAL-------LWHQRMSEKIIRAPTKLKFICENQI 166

Query: 185 TGPVTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241
             P   S    + D Y  Q        G   AL IL  F  ++   Y ++   P  A + 
Sbjct: 167 KIPTAESLGLEYDDCYKRQKG------GRIRALRILDSFLYQRGCGYTKEMSSPVTAFKS 220

Query: 242 TSQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            S+LSPY++ GV+S ++ +       N +KE  V    K  S   S+L+ L W   +   
Sbjct: 221 CSRLSPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQK 280

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +   PS+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R
Sbjct: 281 LEDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMR 340

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q
Sbjct: 341 AMLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQ 398

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
               DP G FIR WLPEL NV  + IH P  WL+K++ SL+YP P +D K+A     +  
Sbjct: 399 SIDQDPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTIDEKQARKFAADNI 455

Query: 475 YAAKKQS 481
           Y  +K S
Sbjct: 456 YKIRKSS 462


>gi|301121222|ref|XP_002908338.1| cryptochrome, putative [Phytophthora infestans T30-4]
 gi|262103369|gb|EEY61421.1| cryptochrome, putative [Phytophthora infestans T30-4]
          Length = 568

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 157/555 (28%), Positives = 244/555 (43%), Gaps = 107/555 (19%)

Query: 11  LVWLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           L+W R DLR+ DN AL AA  +     SD ++I+++I    Q  + G  A +  F+  S+
Sbjct: 4   LLWFRRDLRLHDNLALNAALQHIEEAKSDVELISLYIIHRPQIMRCG--ANRFQFVLESV 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK---L 122
             +  +L+++G      +     DSI+ L        +T +F++   E   V RD     
Sbjct: 62  ADLSGALAERGSKLVVAK----GDSIQVLRRVLPAWDITHMFFDGVCEPYAVERDDRALA 117

Query: 123 LEKRLQHRV-ICKSF---DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---- 174
           L K L  +  + K +   D  V+     I +H+ +  K Y  F KA+       +     
Sbjct: 118 LAKSLGVQTHVTKGYNLYDLEVV-----IASHSGKAPKTYQRFLKAVGAQPTPREPIPTP 172

Query: 175 RSLPVPAIR-----------------------------------LTGPVTPSNIP--RFF 197
            +LP P  +                                   + GP     +P   +F
Sbjct: 173 ETLPSPTRKHSELYEQIANYWKDRKLSDEEKEDDLEERERQIDQIAGPEHDFTLPDLTYF 232

Query: 198 DYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQR----DIPAIQGTSQLSPYLSI 251
            Y           GEQ AL +L+ +C  +++V  + + +     IP    T+ LSPY+  
Sbjct: 233 GYETPEKHSFIYGGEQKALEMLKNYCSDQDRVALFEKPKTSPAQIPPTPSTTVLSPYMFY 292

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--------SVCM 303
           G LSPR  +++++        K      S + +L+WR+FY       P        S C+
Sbjct: 293 GCLSPRTFYHQVRS-IQRGRKKVSVPPVSLIGQLLWRDFYHCHGRANPYFDKMEESSTCL 351

Query: 304 GKPF----IPWTEKIEWNKDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              +    IP  E+ + + D  L     +AW+ G TGFP IDA M QL   GWMH+  R 
Sbjct: 352 QVNWRYHTIPENEE-DLSDDDKLARSQFEAWRDGRTGFPWIDAIMIQLKEEGWMHHLARH 410

Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
             A FL + DL + W  G E F  +L+D D + N G W W +S+   +  YFR+++P   
Sbjct: 411 SVACFLTRGDLYISWVRGLEVFQERLIDHDWSLNAGNWLWLSSSYFFTA-YFRVYSPISF 469

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----------NYPLPIVDHK 464
           GK+ DP+G FI+ ++P L N P +YI+ P  W  K  L+L          +YP PI++HK
Sbjct: 470 GKKSDPEGLFIKKYIPALKNFPAKYIYEP--W--KAPLTLQHAAGCRIGKDYPTPIIEHK 525

Query: 465 KA---CHHTLNQYYA 476
            A   C   L   YA
Sbjct: 526 TAMKRCVEGLKMSYA 540


>gi|255574121|ref|XP_002527976.1| DNA photolyase, putative [Ricinus communis]
 gi|223532602|gb|EEF34388.1| DNA photolyase, putative [Ricinus communis]
          Length = 578

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 139/504 (27%), Positives = 223/504 (44%), Gaps = 78/504 (15%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GIS 54
           M         +VW RNDLRI DN+ L+ A  +S+A V+ V+   P  ++           
Sbjct: 49  MATRHGKGTAIVWFRNDLRILDNEVLFKAWLSSEA-VLPVYCVDPRLFQTTHYFGFPKTG 107

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           A ++ FI   L  ++K+L ++G+              E L S         ++ +++   
Sbjct: 108 ALRAQFIIECLADLKKNLMKRGLNLLIRH----GKPEEVLPSLAQAFAAHTVYAHKETCS 163

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDS---------VLLPPGSILNH--------------- 150
            EV  +KL+ K L HRV      DS         + L  GS + H               
Sbjct: 164 EEVHVEKLMNKAL-HRVKLSPPPDSKASANTTPKLQLIWGSTMYHIDDLPFNITSLPDDF 222

Query: 151 ------------ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
                        L M ++  P  K  +++ ++      P P +   G V PS I +   
Sbjct: 223 FDFRKARIIPFFMLLMLQIVEP--KCAVRSCIKIPKSLAPPPTVEDWGCV-PS-IHQLGL 278

Query: 199 YPFQAIDPMFPIGEQNALHILRKF---------------CKEKVYYYVEQRD-IPAIQGT 242
              +A    F  GE  A+  + ++               C +    Y E R+ +  +  +
Sbjct: 279 EEQKARGMRFLGGESAAISRVYEYLWKKASGICLLNLHCCSDLAKTYKETRNGLLGLDYS 338

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++ SP+L+ G LSPR  +  +K    + L    +    ++  L+WR+ +R    F+   C
Sbjct: 339 TKFSPWLAQGSLSPRFIYEEVKRYERERLANDSTHRVLFV--LLWRDHFR----FFSIKC 392

Query: 303 MGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               F    P      W++D  L ++W+ G TG+P+IDA M++L+  G+M NR RMI  S
Sbjct: 393 GNSIFHLGGPRNVAQRWSQDQRLFESWRDGRTGYPLIDANMKELSATGFMSNRGRMIVCS 452

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLV+D+ VDWR+G E+F + LLD D  SN G W + A  GND+    R F+   Q + FD
Sbjct: 453 FLVRDMGVDWRMGAEWFETCLLDYDPCSNYGNWTYGAGIGNDNRED-RYFSIPKQAQSFD 511

Query: 420 PQGTFIRHWLPELNNVPTQYIHAP 443
           P+G ++ +WLPEL  +     H P
Sbjct: 512 PEGEYVAYWLPELRKLQKDKRHFP 535


>gi|162660638|gb|EDQ48467.1| AtPHR2-like type 1 CPD DNA photolyase [Physcomitrella patens subsp.
           patens]
          Length = 148

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/148 (53%), Positives = 96/148 (64%), Gaps = 10/148 (6%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQLNT G+MHNRLRM+ ASFLVKDL +DWR GE +F  QL D DLA+NNGGWQWAASTG
Sbjct: 1   MRQLNTTGYMHNRLRMVAASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTG 60

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN--------D 451
            D+ P+FRIFNP  Q ++FD    FI  ++PEL  +P    HAP  W  +          
Sbjct: 61  CDAQPWFRIFNPITQSQKFDADARFIERYVPELARLPAALRHAP--WQARPLELAEAGVV 118

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           L  +YP P+VDH  A   TL +Y   K+
Sbjct: 119 LGKDYPHPVVDHAAARERTLARYGVVKQ 146


>gi|123965634|ref|YP_001010715.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200000|gb|ABM71608.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 503

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 205/453 (45%), Gaps = 52/453 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++++W + DLRI DN+AL  +  + D  +I +FI   E W Q   S RQ  F   SLL 
Sbjct: 3   NINILWFKKDLRINDNEALIESLKDRD--IIPIFIIEKEIWSQKTYSDRQWQFCKESLLD 60

Query: 68  VQKSLSQKG---------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           ++ SL+  G         ++  + Q SN   + E    Y  Q+    L Y R     EVR
Sbjct: 61  LRISLANIGQPLIIRTGKVIEIFDQISN---NFEIKAIYSHQETGDYLTYKRD---QEVR 114

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           +   ++K     +I K +         S+    L      T ++K + + L     +  P
Sbjct: 115 KWASMKK-----IIWKEY------LQFSVFRGKLDRNNWSTKWKKNMERKLFTEPSKINP 163

Query: 179 VPAIRLTGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           +        + P  IP   FF +           G +  L  +  F   K+ YY +    
Sbjct: 164 IE-------IDPGEIPPDNFFCFKDDFCKGRLKGGREIGLKRMEYFFSNKLSYYSKDISS 216

Query: 237 P--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           P  +    S+LSPY+S G +S ++  ++      + +  P S      + L W   +   
Sbjct: 217 PEKSFDSCSRLSPYISWGCISIKEIIHK-----ANSITNPNSKMLK--SRLTWHCHFIQK 269

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +   P +   K F P+ +KI   KDSHLL+ W +G TGFP +DA MR LN  GW++ R+R
Sbjct: 270 LESEPELEF-KEFHPYFQKIR-KKDSHLLKLWSEGKTGFPFLDACMRSLNFHGWLNFRMR 327

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF   +L + W+       S+ LD +   +    Q  A  G  S+   RI+NP  Q
Sbjct: 328 AMLMSFASYNLWIPWQESGSELASKFLDYEPGIHWNQCQMQA--GTTSINVNRIYNPIKQ 385

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           GK  DP+G FI+ W+PE+ N P  ++H P  WL
Sbjct: 386 GKDHDPKGNFIKKWVPEIQNYPENFVHEP--WL 416


>gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
 gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
          Length = 527

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 151/506 (29%), Positives = 220/506 (43%), Gaps = 56/506 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-----TPEQWRQHGISAR----QSHFI 61
           L+W R  LR+ DN +L AACH S   V  VF+       P+       SAR    +  F+
Sbjct: 3   LLWFRKGLRLHDNPSLEAACHGS-RNVYPVFVLDPWFLAPDPRASSPGSARVGINRIQFL 61

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY-----CLQQRVTKLFYNRQYEINE 116
             SL  + ++LS +G        +      E LD +     C +        +R  +I E
Sbjct: 62  LESLQDLDRNLSSRGSKLLLVHGNPIQVIPELLDKWRIRKLCFEFDTEPYALDRDAKIKE 121

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLP------PGSILNHALQMYKVYTPFRKALIQNLV 170
             +DK +E  L   V    F+  +L+       P +  +    +     P          
Sbjct: 122 HAKDKGIE--LHCPVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPATKPIGNGPSAIPP 179

Query: 171 QADL---RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEK 226
             DL   + +PVP +   G         + D+  +   P F  GE  AL  L      EK
Sbjct: 180 TGDLHGIKVVPVPTLEELG---------YADF-HEDFSP-FRGGETVALTRLEDSLANEK 228

Query: 227 -VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            V  + + +  P       T+ LSPYL  G LS R  ++R+KE +        S   S  
Sbjct: 229 WVCEFEKPKGDPTAFIKPATTVLSPYLKFGCLSSRLVYSRVKEVY-SRAKSFTSPPVSLE 287

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFI-PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
            +L+WREF+    A Y +    K    P  ++I W  D  LL AW+ G TG+P IDAAM 
Sbjct: 288 AQLLWREFF--YTAAYATANFDKMVGNPICKQIPWKDDDELLSAWRDGRTGYPWIDAAMT 345

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GWMH+  R   A FL + D+ V W  G + F   L+D D + NNG W W +++  
Sbjct: 346 QLRKWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAF 405

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--LSLNYPL 458
            +  Y RI++P    K++D QG +I+H+LPE    P +   AP     K    +  +YP 
Sbjct: 406 FNQ-YHRIYSPITFAKKYDRQGNYIKHFLPEFIYEPWK---APAEIQRKAKCIIGKDYPT 461

Query: 459 PIVDHKKA---CHHTLNQYYAAKKQS 481
           P++DH  A   C   +   YA  K S
Sbjct: 462 PVLDHAAASKICRERMGAAYALSKSS 487


>gi|167626681|ref|YP_001677181.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596682|gb|ABZ86680.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 499

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 136/485 (28%), Positives = 220/485 (45%), Gaps = 35/485 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLRI DN AL  A    D  V+ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQVVWFKRDLRIYDNLALTQAATKGD--VLPIYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127
              L++ G            D++E  +    Q  +  ++ +++   N   +RD  LEK  
Sbjct: 59  NTELTRLGQPL----ILMIGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114

Query: 128 QHRVICKSFDDSVLLPP--GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +   I       V   P    ++ H     K    + K + + +V+A    L       T
Sbjct: 115 KQNNI-------VWHQPYQNGVVRHLADRDKWALVWHKRVSEKIVEAP-NKLKFICENQT 166

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
              T  +I   +D  ++        G   AL IL  F  ++   Y ++   P  A +  S
Sbjct: 167 KIPTAESIGLEYDNCYKRQKG----GRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCS 222

Query: 244 QLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMA 296
           +LSPY++ G +S R+ +   N+ K+E     IK K    S   S+L+ L W   +   + 
Sbjct: 223 RLSPYIAFGAISIREVYQLANQRKKEIKVSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLE 282

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             PS+        + +  +   +    +AWK G TG+P+IDA MR L   GW++ R+R +
Sbjct: 283 DQPSIEYENLHSAYDQLRKEPINQQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAM 342

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q  
Sbjct: 343 LMSFASYHLWLDWRVTSIYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSI 400

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             DP G FI+ W+PEL NV  + IH P  WL+K++ +++YP PI+D K+A     +  Y 
Sbjct: 401 DQDPNGEFIKRWIPELENVSNENIHTP--WLEKHN-AVDYPDPIIDEKQARKFAADNIYK 457

Query: 477 AKKQS 481
            +K S
Sbjct: 458 IRKDS 462


>gi|145881071|gb|ABP97099.1| cryptochrome CRY2 [Acropora millepora]
          Length = 520

 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 219/500 (43%), Gaps = 74/500 (14%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN +L     NS      V+   P + +Q  +S  +  F+  SL  +  
Sbjct: 21  LHWFRKDLRLHDNPSLRECLRNSKV-FYGVYFLPPSEAKQGSVSLNRWGFLLESLRDLDT 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL + G      +     + +E L +   +  + ++ +    E     RD ++       
Sbjct: 80  SLVECGSRLFVIR----GNPVEMLPNLFKKWNINQMSFEVDSEPYSNSRDLVISH----- 130

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--------QNLVQADLRSLPVPAI 182
            + K     V+    S ++H L   ++       ++        ++++Q      PVP +
Sbjct: 131 -LAKENGIEVI----SRVSHTLYDPRILRGLSSGIVPLLFDEFKESVLQKRQPEKPVPKV 185

Query: 183 --RLTGP-VTPSN--------IPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKE 225
             +L G  VTP          +PR       F         ++  GE  AL  +    + 
Sbjct: 186 GRKLFGACVTPVGSDHQQCYGVPRLDEIGGKFSKSGSVCSELYKGGESEALKRMETALQW 245

Query: 226 KVYYYVEQRDIPA---IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSW 281
            V     + +I     +   + LSPYL  G LSPR    R+ EE++    + P S  F  
Sbjct: 246 MVKNDFTEPEITIHSLLXSATHLSPYLRCGCLSPRLLHQRITEEYIKSKGVSPPSELFV- 304

Query: 282 LNELIWREFYRHLMAFYPSV--CMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
             +L+WREF+  +    P     +  P    IPW + +E+      L+ WK+G TGFP I
Sbjct: 305 --KLLWREFFFVVGGQIPDAHEMINNPISLEIPWEDSVEY------LERWKKGTTGFPWI 356

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           DA MRQL T GW+HN  R   ASFL +  L V+W  G + F    LD + + N G W W 
Sbjct: 357 DAIMRQLRTEGWIHNIARRAVASFLTRGCLWVNWEEGFKVFDEFQLDAERSLNVGNWLWV 416

Query: 396 ASTG--NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL- 452
           +++      VP+   F P   GK+ DP G ++R ++PE+ N+PT+YI  P  WL   DL 
Sbjct: 417 STSTFVKGPVPW---FCPVGVGKKIDPTGEYVRKYVPEIRNLPTEYIFEP--WLTPRDLQ 471

Query: 453 -------SLNYPLPIVDHKK 465
                    +YP PIV+H K
Sbjct: 472 RSYGCVIGRDYPAPIVNHVK 491


>gi|187931260|ref|YP_001891244.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712169|gb|ACD30466.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 499

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 220/487 (45%), Gaps = 39/487 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLASEKGD--ILQLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE--VRRDKLLEKR 126
              L++ G            D++E  +   +Q+   K  ++ Q   N+   +RD  LEK 
Sbjct: 59  NTELTKLGQSLAIM----LGDAVEIFEQ-LIQKYNIKNVWSHQETWNDWTYQRDIKLEKF 113

Query: 127 LQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            +   I   + + + V+       N AL        + + + + +++A  +   +   ++
Sbjct: 114 FKQNNIVWHQPYQNGVVRCLADRDNWAL-------LWHQRMSEKIIRAPTKLKFICENQI 166

Query: 185 TGPVTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241
             P   S    + D Y  Q        G   AL IL  F  ++   Y ++   P  A + 
Sbjct: 167 KIPTAESLGLEYDDCYKRQKG------GRIRALRILDSFLYQRGCGYTKEMSSPVTAFKS 220

Query: 242 TSQLSPYLSIGVLSPRQCW-------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            S+LSPY++ G +S ++ +       N +KE  V    K  S   S+L+ L W   +   
Sbjct: 221 CSRLSPYIAFGAISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQK 280

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +   PS+        + +      +    +AWK   TG+P+IDA MR L   GW++ R+R
Sbjct: 281 LEDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTDNTGYPMIDACMRALIATGWLNFRMR 340

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q
Sbjct: 341 AMLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQ 398

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
               DP G FIR WLPEL NV  + IH P  WL+K++ SL+YP P +D K+A     +  
Sbjct: 399 SIDQDPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTIDEKQARKFAADNI 455

Query: 475 YAAKKQS 481
           Y  +K S
Sbjct: 456 YKIRKSS 462


>gi|326500588|dbj|BAK06380.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 592

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 140/498 (28%), Positives = 225/498 (45%), Gaps = 77/498 (15%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-------QWRQHGISARQSHFI 61
           V +VW R+DLR+ DN+AL  A   S A V+ V+   P        ++      A ++ F+
Sbjct: 97  VSVVWFRSDLRVLDNEALARAWAASGA-VLPVYCVDPRVLAGATHRFGFPKTGALRAQFL 155

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  ++++L ++G+          D          L +    +  +  Y   E   ++
Sbjct: 156 IECLGDLKQNLQKRGLDLLVRHGKPED---------ILPEIAKAVSAHTVYAHKETCSEE 206

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ----------MY-------------KVY 158
           LL + L  R + K     V++P G   N +L           MY              VY
Sbjct: 207 LLVEHLVRRGLEK-----VIIPQGGASNKSLSPKLQLIWGATMYHIDDLPFPVSNLPDVY 261

Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS---------NIPRFFDYPFQAIDP--- 206
           T FRKA+           LP P++   GP   S         +IP               
Sbjct: 262 TQFRKAVESKSSVRSCSKLP-PSL---GPAPSSGLDEIGGWGSIPTLESLGLSVTKSEKG 317

Query: 207 -MFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNR 262
             F  GE  AL  + ++    +++  Y E R+ +     +++ SP+L+ G LSPR     
Sbjct: 318 MRFVGGESAALGRVHEYFWKNDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYVCEE 377

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKI--EWNK 318
           ++      +    +  +  L ELIWR+++R L   Y +    +G P      K+  +W++
Sbjct: 378 VRRYEKQRVANDST--YWVLFELIWRDYFRFLSEKYGNSIFHLGGP-----RKVASKWSQ 430

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D  L ++WK G TG+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F +
Sbjct: 431 DQALFESWKDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFET 490

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D ASN G W + A  GND     R F+   Q K +DP G ++ +WLPEL ++  +
Sbjct: 491 CLLDYDPASNYGNWTYGAGVGNDPRED-RYFSIPKQAKTYDPDGEYVAYWLPELRSLAKE 549

Query: 439 YIHAPHSWLDKNDLSLNY 456
             + P +   K  + L +
Sbjct: 550 RRNFPGASYIKQVVPLKF 567


>gi|167521638|ref|XP_001745157.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776115|gb|EDQ89735.1| predicted protein [Monosiga brevicollis MX1]
          Length = 525

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 138/490 (28%), Positives = 217/490 (44%), Gaps = 56/490 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW--------RQHG----ISARQS 58
           +VW RNDLR+ DN+ L  A   S   V+ V+     Q+        R+ G        ++
Sbjct: 11  VVWFRNDLRVHDNEVLLQAAKASHNHVVPVYCFDIRQYSLVITHRSRRCGQFPKCGRPRA 70

Query: 59  HFIYASLLQVQKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
            F+  S+  ++  L +   G+V +           E +     Q   T++F +++    E
Sbjct: 71  RFLIESVDDLRTRLQELGSGLVVRTGLPE------EEVARVAAQVGATQVFAHQEVCSEE 124

Query: 117 VRRDKLLEKRLQ-------HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---- 165
           V  +  L+++L+         V     DD    P          +  V+T FRK +    
Sbjct: 125 VAAEHRLKRQLEVPLSLHWGAVTLCHLDDLDFGP------RCKHLPSVFTQFRKRVEADM 178

Query: 166 -IQNLVQADLRSLPVPAIRLTG--PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
            ++ +V A  R  P+P+    G  P      P   +   +A+ P F  GE  A   L+ +
Sbjct: 179 HVRPVVAAPARLAPLPSDLELGSIPTVEDLCPGQHEPDERAVLP-FKGGETAARARLQYY 237

Query: 223 CKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
             E      Y   +  +     +S+ SP+L+ G L+ R  ++ +K    +   + ++ + 
Sbjct: 238 LWESNLLASYKDTRNGLVGGDYSSKFSPWLAHGNLTARWIYHEVKRYEQE---RTENTST 294

Query: 280 SWL-NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            WL  EL+WR+++R  +A      + KP     + + W       +AW+ G TGFP IDA
Sbjct: 295 YWLIFELLWRDYFR-FVALQHGTAIFKPGGVQHKDVPWRHSPADFEAWQNGQTGFPFIDA 353

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            MR+L   G+M NR R   ASFL KDL +DWR+G E+F + LLD D  SN G W +AA  
Sbjct: 354 NMRELAKTGFMSNRGRQNVASFLTKDLQIDWRLGAEWFETLLLDHDPCSNYGNWNYAAGV 413

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DL 452
           GND     R FN   Q K +DP   ++  W+PEL  +     H P     +        L
Sbjct: 414 GNDPR-QGRHFNVIKQAKTYDPTAEYVHLWVPELRGLDAPQAHVPFKLSSEELAQANIQL 472

Query: 453 SLNYPLPIVD 462
              YP P+VD
Sbjct: 473 GSTYPRPVVD 482


>gi|323454932|gb|EGB10801.1| hypothetical protein AURANDRAFT_77923 [Aureococcus anophagefferens]
          Length = 526

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 138/490 (28%), Positives = 210/490 (42%), Gaps = 49/490 (10%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---------ATPEQWRQHGI 53
           A TA    +VWLR++LR+ DN AL A        V+ V++         AT E       
Sbjct: 5   AATAKPTTIVWLRDELRVHDN-ALLAEAAARGGPVLPVYVLDDRVFDAAATSESGGSRKC 63

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A+++ F   +L  ++ +L  +G      +    D     L   C               
Sbjct: 64  GAKRARFTLEALDDLRATLGARGSGLVVERGRPAD----VLAGLCAAVGGDATVLCSDAA 119

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPP---GSILNHALQMYKVYTPFRKALIQNLV 170
            +E R+D+    ++    + K ++ ++  P    G   +     ++         ++  V
Sbjct: 120 CSEERKDEAAVAKVAP--LAKVWEGTLYHPEDLRGVAFHDLFTAWRTKVEKAGTRVRGDV 177

Query: 171 QADLRSLPVPAI----RLTGPVTPSNIPRFFDYPFQAIDPMFPI-----GEQNALHILRK 221
                +LP P      +L  P+ P+     +D    A D          GE  AL  LRK
Sbjct: 178 FPKAATLPAPPAGVDAKLAAPL-PTLDALGYDAADAACDGRGDFFAPAGGETAALARLRK 236

Query: 222 --FCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
             F ++++  Y   RD    QG +++L+P+LS G +SPR       +      IK KS  
Sbjct: 237 YVFEEDRLKDYFNTRDGMIGQGYSTKLAPWLSRGCVSPRAVARACADYERTRGIKNKS-T 295

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHLLQAWKQGYTGFP 334
           +  + EL WR+++     FY      K F P+  K      W  D   L+ WK G TG P
Sbjct: 296 YWVVFELTWRDYF----VFYAQKYGSKLFRPYGVKDIRERTWRADPEALRRWKAGETGAP 351

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           ++DA MR+L   G+M NR R   AS+LV DL +DWR+G E+F   L+D    +N G W  
Sbjct: 352 LVDANMRELAATGFMSNRGRQNVASYLVLDLGLDWRLGAEHFEEHLVDYTPEANWGNWHA 411

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
           AA      V  F I     Q K +DP+G +++ W+PEL  VP      P S L K D   
Sbjct: 412 AAGLSGGRVNRFNILK---QSKDYDPKGDYVKLWIPELAKVPAPQCFTPSS-LSKADREA 467

Query: 455 ----NYPLPI 460
               +YP P+
Sbjct: 468 AGAGDYPAPL 477


>gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo]
          Length = 530

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 140/509 (27%), Positives = 223/509 (43%), Gaps = 76/509 (14%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++HL   R  LR+ DN AL AA  +S+       +          I A + HF+  SL  
Sbjct: 5   TIHL--FRKGLRLHDNPALLAALQSSEVVYPVYILDRAFMTSSMHIGALRWHFLLQSLED 62

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           ++ SL Q G   +V Q    +   D ++                  ++ I +V  D  +E
Sbjct: 63  LRSSLCQLGSCLLVIQGEYDAVVRDHVQ------------------KWNITQVTLDAEME 104

Query: 125 ---KRLQHRVICKSFDDSVLLPPGSILNHALQ---------------MYKVYTPFRKAL- 165
              K ++  +  ++  + +     S++ H+L                 YK +      L 
Sbjct: 105 PFYKEMEANI--RALGEELGFEVLSLMGHSLYNTQRILELNGGTPPLTYKRFLHILSLLG 162

Query: 166 -----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
                I+NL   D +    P + L        +P     P ++I P +  GE   L  L 
Sbjct: 163 DPEMPIRNLTAEDFQRCSPPELCL-AECYRVPLPTDLKIPPESISP-WRGGESEGLQRLE 220

Query: 221 KFCKEK---VYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           +   ++   V  + + + +P   +  T+ LSPY S+G LS R  + RL     ++  + K
Sbjct: 221 QHLADRSGWVASFTKPKTVPNSLLPSTTGLSPYFSMGCLSVRSFFYRLS----NIYAQAK 276

Query: 276 SGAF---SWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
             +    S   +L+WREF+  + +  P+     G P      +I W +D+  L  WK   
Sbjct: 277 HHSLPPVSLQGQLLWREFFYTVASATPNFTKMAGNPIC---LQIRWYEDAERLHRWKTAQ 333

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389
           TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N 
Sbjct: 334 TGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGMKVFEELLLDADYSINA 393

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
           G W W +++      Y RIF P   G+R DP+G +IR +LP L N P++YI+ P +  ++
Sbjct: 394 GNWMWLSASAFFH-HYTRIFCPVRFGRRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEE 452

Query: 450 ND------LSLNYPLPIVDHKKACHHTLN 472
                   +  +YP P+VDHK+A  H L 
Sbjct: 453 EQKQAGCIIGRDYPFPMVDHKEASDHNLQ 481


>gi|88802284|ref|ZP_01117811.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P]
 gi|88781142|gb|EAR12320.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P]
          Length = 436

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 204/435 (46%), Gaps = 25/435 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR------QHGISARQSHFIYAS 64
           ++W RN+LR+ DN++L  A  N  +KVIAV+   P+ ++      Q   S R + F+  +
Sbjct: 10  VIWFRNNLRVQDNQSLTKAIENH-SKVIAVYFFDPKLFKIDSFGFQKTASFR-TKFLIET 67

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++K+L+   I    +  S  +     + + C +  V  ++  +++   E+  D  ++
Sbjct: 68  ITDLKKNLAALNITLLTYMESPENK----MHTLCDEFSVGTIYTQKEWTREEIATDNFIK 123

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPVPA 181
             L   V   +  D  L  P ++     ++  V+T FRK + + +    +  +  L    
Sbjct: 124 STLPETVRFVADYDQFLYHPDAVSRDFSKIPDVFTIFRKKVEKTVAVEKECTVTKLSERN 183

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRK--FCKEKVYYYVEQRD-I 236
           +  T    PS     F          FP   GE  AL  L+   F  +KV +Y   R+ +
Sbjct: 184 LIETETAIPSMESLGFSDTKTHAKTAFPFKGGETAALERLQYYFFESKKVSFYKNTRNGL 243

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +++ SP+L+ G LS +  + ++KE   +         +  + ELIWR++++++  
Sbjct: 244 VGTDYSTKFSPWLANGSLSAKTIYWKIKE--YEAEFGSNQSTYWVIFELIWRDYFKYISL 301

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            Y +       I   +  EWN D   +Q W  G T    ++A M +L   G+M NR R  
Sbjct: 302 KYNAKVFRIGGIL-EKTYEWNTDQKTVQQWINGETKDAFVNANMIELKETGFMSNRGRQN 360

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS+  KDLL+DWRIG  YF S LLD D+ SN G W + A  GND  P  R FN  +Q  
Sbjct: 361 VASYFAKDLLLDWRIGAAYFESVLLDYDVHSNYGNWMYVAGVGND--PRDRKFNTKMQAD 418

Query: 417 RFDPQGTFIRHWLPE 431
           R+D    + + WL +
Sbjct: 419 RYDQNHKYRKLWLEK 433


>gi|23954322|emb|CAC82537.1| Cryptochrome 2 [Oryza sativa Indica Group]
          Length = 433

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 138/255 (54%), Gaps = 11/255 (4%)

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
           +L +F    +  Y +         TS LSPYL  G +S R+ +  ++ + +    +  S 
Sbjct: 2   MLEEFVSHGLLEYSKHGMKVEGATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSE 61

Query: 278 AFS----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
           A      ++  +  RE+ R+L   +P     K  +   +   W  D    ++W+QG TG+
Sbjct: 62  AEESIHFFMRSIGLREYSRYLCFNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGY 120

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           P++DA MR+L   GW HNR+R+I +SF VK LL+ W  G +YF   LLD DL S+  GWQ
Sbjct: 121 PLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQ 180

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDK 449
           + + +  D     R+ NP +QG+++DP G ++R W+PEL  +PT++IH    AP   L+ 
Sbjct: 181 YISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEV 240

Query: 450 N--DLSLNYPLPIVD 462
              +L  NYP PIVD
Sbjct: 241 AGVELGFNYPKPIVD 255


>gi|317419959|emb|CBN81995.1| Cryptochrome DASH [Dicentrarchus labrax]
          Length = 521

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 220/482 (45%), Gaps = 53/482 (10%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFIYASLLQ 67
           LRNDLR  DN+  + A  N++  ++ ++   P  +              +  F+  S+  
Sbjct: 11  LRNDLRFQDNELFHWAQRNAEY-IVPLYCFDPRHYVGTYNYNLPKTGPFRLRFLLDSIRD 69

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           ++ +L  KG   +V Q        D I+ L S      V+ + ++ +    E+  +K ++
Sbjct: 70  LRNTLLSKGSNLVVRQGKPEEVVADLIKQLGS------VSAVAFHEEVTSEELNVEKGVK 123

Query: 125 KRLQHRVICKSFDDSVLLPPGSIL--------NHALQMYKVYTPFRKALIQNLVQADLRS 176
                  +C      V    GS L        +H  ++  VYT FRKA+        +  
Sbjct: 124 D------VCAQMKVKVHTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVETQSRVRPVFP 177

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPI--GEQNALHILRKFC--KEK 226
            P     L   +    IP   D   Q  +P+      FP   GE   L  L+ +    + 
Sbjct: 178 TPEQLKPLPSGLEEGAIPTAED--LQQTEPLTDPRSAFPCSGGESQVLARLKHYFWDTDA 235

Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           V  Y E R+ +  +  +++ +P+L++G +SPR  ++++K+   +         +  + EL
Sbjct: 236 VATYKETRNGLIGVDYSTKFAPWLAMGCISPRYIYHQIKQ--YEKERTANQSTYWVIFEL 293

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WR++++ +   Y +       +   + I W KD  L  AWK+G TG P +DA MR+L  
Sbjct: 294 LWRDYFKFVGVKYGNRLFQVKGLQ-DKSIPWKKDMKLFNAWKEGQTGVPFVDANMRELAM 352

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND    
Sbjct: 353 TGFMSNRGRQNVASFLTKDLGLDWRMGAEWFEYLLIDHDVCSNYGNWLYSAGIGNDPREN 412

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--YPLP 459
            R FN   QG  +D  G ++R W+PEL  +    +H P     + L    +SL   YP P
Sbjct: 413 -RKFNMIKQGLDYDSNGDYVRQWVPELQGIKGADVHTPWTLSTAALSHAHVSLGETYPNP 471

Query: 460 IV 461
           IV
Sbjct: 472 IV 473


>gi|223647614|gb|ACN10565.1| Cryptochrome-1 [Salmo salar]
          Length = 523

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 141/495 (28%), Positives = 218/495 (44%), Gaps = 46/495 (9%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W R  LR+ DN AL AA  +   ++  VF+  P       I   +  F+  +L  +  SL
Sbjct: 8   WFRKGLRLHDNPALVAALRDC-KEIYPVFVLDPYSPNNVNIGINRWKFLIGALKDLDCSL 66

Query: 73  SQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
            +    +F     ++     E       + +VT+L Y    E   +RRDK + +  +   
Sbjct: 67  RKLNSRLFVVRGKTD-----EVFPKLFQKWKVTRLTYEYDTEPFSLRRDKEVGRLAEEHG 121

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVPAIRLTGPV 188
           +   +  S  L     ++  ++      P     +Q LV +     R +P P       V
Sbjct: 122 VEIIYKVSHTL---YNIDRIIEENNGKAPLTYNRLQTLVSSIGPPKRPIPAPTCDDMKDV 178

Query: 189 -TP-----------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQR 234
            TP           S + + +  P    + +FP GEQ AL  L +    KE V  + + +
Sbjct: 179 KTPCSEKHEENYGISTLEKLYQDPESLTEELFPGGEQEALRRLDQHMARKEWVCGFEKPQ 238

Query: 235 DIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
             P      T+ LSPY++ G LS R  W  L + +     K      S   +L+WREF+ 
Sbjct: 239 TSPNSLSPSTTVLSPYMTFGCLSARTFWWSLTDVYQGK--KHSQPPVSLHGQLLWREFFY 296

Query: 293 HLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
                 P+     G P      +++W+ +   L AW +  TGFP IDA M QL   GW+H
Sbjct: 297 TAGLGIPNFDKMEGNPVC---TQVDWDSNFEYLAAWAEARTGFPFIDAIMTQLRQEGWIH 353

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRI 408
           +  R   A FL + DL + W  G++ F   LLDGD + N G WQW +AST      +FR+
Sbjct: 354 HLARHAVACFLTRGDLWISWEEGQKVFEELLLDGDWSLNAGNWQWLSASTFFHQ--FFRV 411

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVD 462
           ++P   GK+ D  G +I+ +LP L   P QYI+    AP S  +     +  +YP PIV+
Sbjct: 412 YSPIAFGKKTDKNGDYIKKYLPHLKKYPAQYIYEPWKAPRSVQEAAGCIVGKDYPRPIVE 471

Query: 463 HKKACHHTLNQYYAA 477
           H+      + +  AA
Sbjct: 472 HEVISKKNIQRMKAA 486


>gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus]
 gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus]
          Length = 529

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 140/516 (27%), Positives = 225/516 (43%), Gaps = 75/516 (14%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++HL   R  LR+ DN AL AA  +S+       +          I A + HF+  SL  
Sbjct: 5   TIHL--FRKGLRLHDNPALLAALQSSEVVYPVYILDRAFMTSSMHIGALRWHFLLQSLED 62

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           ++ SL Q G   +V Q    S   D ++                  ++ I +V  D  +E
Sbjct: 63  LRSSLRQLGSCLLVIQGEYESVVRDHVQ------------------KWNITQVTLDAEME 104

Query: 125 ---KRLQHRVICKSFDDSVLLPPGSILNHALQMYK------------VYTPFRKAL---- 165
              K ++  +  +   + +     S++ H+L   +             Y  F + L    
Sbjct: 105 PFYKEMEANI--RGLGEELGFQVLSLMGHSLYNTQRILELNGGTPPLTYKRFLRILSLLG 162

Query: 166 -----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
                ++N    D +    P + L        +P     P ++I P +  GE   L  L 
Sbjct: 163 DPEVPVRNPTAEDFQRCSPPELGL-AECYGVPLPTDLKIPPESISP-WRGGESEGLQRLE 220

Query: 221 KFCKEK--VYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
           +   ++  V  + + + +P   +  T+ LSPY S G LS R  + RL     ++  + K 
Sbjct: 221 QHLADQGWVASFTKPKTVPNSLLPSTTGLSPYFSTGCLSVRSFFYRLS----NIYAQAKH 276

Query: 277 GAF---SWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
            +    S   +L+WREF+  + +  P+     G P      +I W +D+  L  WK   T
Sbjct: 277 HSLPPVSLQGQLLWREFFYTVASATPNFTKMAGNPIC---LQIRWYEDAERLHKWKTAQT 333

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390
           GFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G
Sbjct: 334 GFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGMKVFEELLLDADYSINAG 393

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
            W W +++      Y RIF P   G+R DP+G +IR +LP L N P++YI+ P +  ++ 
Sbjct: 394 NWMWLSASAFFH-HYTRIFCPVRFGRRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEEE 452

Query: 451 D------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                  +  +YP P+VDHK+A  H L     A+++
Sbjct: 453 QKQAGCIIGRDYPFPMVDHKEASDHNLQLMKQAREE 488


>gi|241667256|ref|ZP_04754834.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875807|ref|ZP_05248517.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841828|gb|EET20242.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 499

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 222/487 (45%), Gaps = 39/487 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLRI DN AL  A    D  V+ ++I  P+ W+Q  +S RQ  F+   L ++
Sbjct: 1   MQVVWFKRDLRINDNLALSLASEKED--VLPLYIIEPKLWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
              L++ G  ++          D++E  +    Q  +  ++ +++   N   +RD  LEK
Sbjct: 59  NTELTRLGQPLILM------IGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEK 112

Query: 126 RLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             +   I   + + + V+         AL        + K + + +V+A    L      
Sbjct: 113 FFKQNNIVWHQPYQNGVVRCLADRDKWAL-------VWHKRMSEKIVEAP-NKLKFICEN 164

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241
            T   T  +I   +D  ++        G   AL IL  F  ++   Y ++   P  A + 
Sbjct: 165 QTKIPTAESIGLEYDNCYKRQKG----GRVRALRILDSFLYQRGCGYTKEMSSPVTAFKS 220

Query: 242 TSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHL 294
            S+LSPY++ GV+S ++ +   N+ K E     IK K    S   S+L+ L W   +   
Sbjct: 221 CSRLSPYMAFGVISIKEVYQLANQRKNEIKASSIKNKTKWLSAMRSFLSRLRWHCHFMQK 280

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +   P++        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R
Sbjct: 281 LEDQPNIEYENLHSAYDQLRTEPLNQQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMR 340

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q
Sbjct: 341 AMLMSFASYHLWLDWRVTSLYLARLFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQ 398

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
               DP G FIR WLPEL NV  + IH P  WL+K++ +++YP PI+D K+A     +  
Sbjct: 399 SIDQDPNGEFIRRWLPELENVSNENIHTP--WLEKHN-AVDYPDPIIDEKQARKFAADNI 455

Query: 475 YAAKKQS 481
           Y  +K S
Sbjct: 456 YKIRKNS 462


>gi|292656958|ref|YP_003536855.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
 gi|291372215|gb|ADE04442.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
          Length = 503

 Score =  154 bits (388), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 137/264 (51%), Gaps = 13/264 (4%)

Query: 208 FPIGEQNALHILRKF--CKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           F  GE  AL  +  +    + +  Y E R+ +     +S+ SP+L+ G LSPR     + 
Sbjct: 241 FDGGETAALDRVESYIWAGDHLREYKEARNGLLGADYSSKFSPWLNEGCLSPRYVKAEV- 299

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
           + + D  ++  S  +  + EL WR+F++   A + S C  +  I     I+W +D    +
Sbjct: 300 DRYEDRRVENDS-TYWLVFELRWRDFFQFQFAKHGSDCFHREGIRERTDIDWRRDDAQFE 358

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            W  G TG P +DA MR+LN  G+M NR R   ASFL  DL +DWR G  YF ++L+D D
Sbjct: 359 RWAAGKTGIPFVDANMRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAYFETRLVDYD 418

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            ASN G W + A  GNDS    R F+   Q  R+D    +++ WLPEL+ +P +Y H P 
Sbjct: 419 PASNYGNWAYIAGVGNDSRE--RSFDVRWQANRYDEDAEYVKTWLPELDALPAEYAHEPW 476

Query: 445 SWLDKN------DLSLNYPLPIVD 462
                       +L ++YP P+VD
Sbjct: 477 KLSGAEQASYGVELGVDYPEPMVD 500


>gi|84385647|ref|ZP_00988678.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
 gi|84379627|gb|EAP96479.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
          Length = 462

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 218/464 (46%), Gaps = 65/464 (14%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA------TPEQWRQHGISARQSHFIY 62
           + L    NDLRI DN+ LY A  + D K+I V +       + +  ++   SA +  F+ 
Sbjct: 4   IGLYLFTNDLRINDNQLLYYAAQSVD-KLICVIVEPTLVRFSADLAQEQSYSAHRQAFVS 62

Query: 63  ASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
            S+  ++ +L + G   +V + +     D + + L    + Q VT  F N     +E + 
Sbjct: 63  QSIANLESNLVKLGQQLVVIRSNHLEP-DTAEKTLSHIIVSQHVTHFFANAHCGYDERQL 121

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSIL--NHAL--QMYKV---YTPFRKA---LIQNL 169
            + ++++  + V+C        LP  S L  +H L  ++ KV   +T FRK    L  N 
Sbjct: 122 IRSIQRQSPNLVMC--------LPHHSTLFDSHELPFELSKVPSSFTKFRKLVEHLDVNR 173

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDPMFPIGEQNAL-HILRKFCKEK 226
            +  + +LP PA+RL   +T ++    F  P     +   +  GE   L H+   F  + 
Sbjct: 174 NETVISALP-PAVRLA--LTSTSTISLFSSPNDESVVISDYWGGEGAGLAHLENYFSHDY 230

Query: 227 VYYYVEQRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-E 284
            + Y + R++   I+ +++ SP+L++G +SP+  +  LK+   D  I   +    W+  E
Sbjct: 231 AFNYKQTRNVFDGIENSTKFSPWLALGCVSPKTIYCHLKQFEADHGINDST---YWIYFE 287

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDA 338
           L+WRE++     ++  + +G      T   E N  +        L  WK G T +PI+DA
Sbjct: 288 LLWREYF-----YWKCLSLGSSLFGETSDHELNSSNSSATLNLNLAKWKSGNTNYPIVDA 342

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            MRQLNT G+M NR R + AS L+ +L +DWR G  YF SQL+D D+ASN G W + A  
Sbjct: 343 CMRQLNTTGYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGA 402

Query: 399 --------------GNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
                          N + P  R F+   Q   +DP   FI  W
Sbjct: 403 LRPQVSTQTNKQKNANQAQPKSRHFDLGKQTDMYDPDHAFINKW 446


>gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
           1055/1]
 gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
           1055/1]
          Length = 550

 Score =  153 bits (387), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 146/518 (28%), Positives = 221/518 (42%), Gaps = 59/518 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFIYAS 64
           V + W RN LR  DN  L  AC  S++ ++ +++  PE         R    +++F+  S
Sbjct: 11  VAIHWFRNGLRFHDNPCLLDACQKSES-LLPIYVVDPEFPFAQTAGCRAGTIRANFLLES 69

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-------RQYEINEV 117
           + +V + L + G             S E L       +   LFY        R+ +   +
Sbjct: 70  INEVDEKLRKMGSQL----VVVLGKSHEVLPEIVATTQAKALFYEQEAAAPVREQDAETI 125

Query: 118 RRDKLLEKRLQHRVICK--SFDDSVLLPPGSILNH-----ALQMYKVYTP-FRKALIQNL 169
           +  K   KR      CK  ++    L P    L       A   Y  +T  F K  +   
Sbjct: 126 QAIKNRLKRDGKNYECKFEAYATHTLHPMERYLAQCKDHTAPSTYGSFTKIFNKMSVAKE 185

Query: 170 VQA--DLRSLPVPAIRLTGP--VTPSNIPRFFDYPFQAI-DPM---------FPIGEQNA 215
           V    ++ SLP  +++L          +P   D  + A  D M         F  GE  A
Sbjct: 186 VNEVKEVPSLPNKSVKLLEKSFAEALRMPTLKDLGYAAAADDMKNSGKGGYAFAGGENAA 245

Query: 216 LHILRKFCKEK--VYYYVEQRDIP---AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           + +L K       V  + + +  P       T+ LSPY+  G +SPR+ ++ L + +   
Sbjct: 246 IELLAKNMARSQWVATFEKPKTSPNDATRPSTTALSPYVKHGCISPRRFYHELSKVYSKY 305

Query: 271 LIKPKSGA-FSWLNELIWREFYRHLMAFYPSVCMGKPFI-PWTEKIEWNKDSHLLQAWKQ 328
             K  S    S   +L+WR+F  + +  Y +    K    P   +I W+ D  LL AWK 
Sbjct: 306 NSKETSKPPVSLHGQLMWRDF--NYLVGYSTPNFDKMIDNPIARQIPWDDDPDLLLAWKM 363

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387
             TG+P IDA M QL   GW+H+  R   A FL + DL   W  G   F   L+D D + 
Sbjct: 364 SKTGYPYIDAIMTQLRETGWIHHLARHSVACFLTRGDLWQSWEDGATVFEEYLIDADWSI 423

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           NN  WQW + T +    YFR ++P   GK+ DP G +IR WLP+  ++P +YI+ P  W 
Sbjct: 424 NNFNWQWLSCTAH-FYQYFRCYSPIAFGKKTDPNGDYIRKWLPQFKDMPAKYIYEP--WE 480

Query: 448 DKNDL--------SLNYPLPIVDHKKACHHTLNQYYAA 477
              +L          NYP PIVDHK    + +++   A
Sbjct: 481 APIELQKKVGVIVGENYPHPIVDHKLVSKNNMSRMKEA 518


>gi|254449817|ref|ZP_05063254.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
           antarcticus 238]
 gi|198264223|gb|EDY88493.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
           antarcticus 238]
          Length = 522

 Score =  153 bits (386), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 215/491 (43%), Gaps = 47/491 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLRI D+  L AA   ++A +I ++I  PE W+Q   S R  HFI+  L  +  
Sbjct: 18  IVWFKRDLRINDHAPLLAAS-RTNAPIIPLYIVEPEYWQQPFASRRHWHFIHDGLCDLDS 76

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRLQH 129
            L++ G     H      DS + +    L   V+ ++ + +   +    RD  ++K    
Sbjct: 77  GLAELG----QHLVVKVGDSCDVIKQLHLDHDVSHVYAHEETGNLWTYNRDIAVQK---- 128

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRLTGPV 188
             +C++   ++   P + +   L+    ++  R A +   +      LP P A+    P 
Sbjct: 129 --LCQNHGIALHEAPTNGVVRRLRSRDDWSKIRNARMAEKI------LPKPNALNSFPPC 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TS 243
           +   +P   D  F  + P+  +   G + A+  LR F   +   Y+     P       S
Sbjct: 181 SSDTLPDKNDPIFGNV-PIGKVQKGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG------AFSWLNELIWREFYRHLMAF 297
           +LS +L+ G LS R+    + +    L             AF   + L WR  +   +  
Sbjct: 240 RLSAHLAWGTLSVREVAQSIVKRHAQLSPDENKSFGRNLTAFG--SRLAWRCHFIQKIED 297

Query: 298 YPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P +   CM   F     ++  + D H  QAW  G TG+P +DA MR L   GW+  R+R
Sbjct: 298 QPEIETHCMHPAFEGL--RVGEHNDLHF-QAWASGQTGYPFVDACMRNLTAEGWITFRMR 354

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF    L +DWR+  E+      D +   +    Q    +G   +   R++NP  Q
Sbjct: 355 AMLVSFASYQLWLDWRVTGEHLARLFTDFEPGIHYS--QLQMQSGVTGINTMRVYNPIKQ 412

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIVDHKKACH 468
               DP+GTFIR W+PEL +VP ++IH P  W    +D  D +L  +YP P+VD   +  
Sbjct: 413 SMEHDPKGTFIRKWVPELKSVPDEFIHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAK 472

Query: 469 HTLNQYYAAKK 479
               Q  A ++
Sbjct: 473 AAKQQISAIRQ 483


>gi|255083581|ref|XP_002508365.1| predicted protein [Micromonas sp. RCC299]
 gi|226523642|gb|ACO69623.1| predicted protein [Micromonas sp. RCC299]
          Length = 488

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 139/485 (28%), Positives = 210/485 (43%), Gaps = 71/485 (14%)

Query: 11  LVWLRNDLRITDNKALYAA----CHNSDAKVIAVFIA-----TPEQWRQHGISARQSHFI 61
           +VW RNDLR+ DN A+  A       +   V+ +++       P  W        +  F 
Sbjct: 3   VVWFRNDLRLQDNYAVKQAESIATRTAGCDVLPLYVFDPRTFAPSSWGSPKCGGHRGRFQ 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+L ++++L   G               E +  Y L     K   N +    E+R D 
Sbjct: 63  LESVLNLKRNLRAIGSDLLVA----VGKPEEVIPKYLLDAPGAK---NEEVCSEELRVDA 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNH---------ALQMYKVYTPFRKALIQNLVQA 172
            ++  ++        D       GS L H         A  +  V+TPFR  +     ++
Sbjct: 116 KVKSAVKSAGNLNRLDKIW----GSTLYHKDDLPFRSDASDLPDVFTPFRNKVES---KS 168

Query: 173 DLRSLPVPAIRLTGPVTPSNI-------PRFFDYPFQAIDPM--------------FPIG 211
           + R  PVP         PS++       P   D PF   D                F  G
Sbjct: 169 EPRE-PVPPPAKGALPVPSDMTEAFAFEPTVADLPFANEDERAIAAAGAHPDGVLPFEGG 227

Query: 212 EQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           E  AL  +R +    EK+  Y E R+ +     +S+L+P+L+ G +SPRQ    ++ +F 
Sbjct: 228 ESAALARVRYYVWESEKIATYFETRNGMLGGDYSSKLAPWLAHGCVSPRQVVAEVR-KFE 286

Query: 269 DLLIKPKSGAFSWLNELIWREFY-----RHLMAFYPS----VCMGKPFIPWTEKIEWNKD 319
              ++ KS  +  + ELIWR+F+     +H  A + S                   W  D
Sbjct: 287 SQRVENKS-TYWLIFELIWRDFFKFFALKHGNAIFFSEGTAGGKMGGAGYKGGAGPWRDD 345

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
              L AWK+G TG+P++DA MR+L   G+M NR R   AS+L  D  VDWR+G E+F ++
Sbjct: 346 PAALAAWKEGKTGYPLVDANMRELAATGFMSNRGRQNVASWLALDAGVDWRLGAEWFENK 405

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           LLD D ++N G W  AA      V  F I     Q K +DP+G +I++W+PEL  VP +Y
Sbjct: 406 LLDYDCSANWGNWVAAAGMTGGRVNKFNI---AKQTKDYDPEGEYIKYWVPELRKVPAKY 462

Query: 440 IHAPH 444
           I  P 
Sbjct: 463 IAEPR 467


>gi|301617517|ref|XP_002938187.1| PREDICTED: cryptochrome-2-like [Xenopus (Silurana) tropicalis]
          Length = 862

 Score =  153 bits (386), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 205/467 (43%), Gaps = 43/467 (9%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQWRQH---GISARQ 57
           +   AM   LVW R DLR+ DN AL +A  +    VI VF+    E+  Q+         
Sbjct: 224 RGLVAMKPVLVWFRRDLRLHDNPALISALEHG-VPVIPVFLWCINEETGQNFTLATGGAT 282

Query: 58  SHFIYASLLQVQKSLSQK---GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
            ++++ +LL++ +SL Q+    I+F+  +        E L S   +     +  N  YE 
Sbjct: 283 KYWLHHALLKLNQSLIQRFGSHIIFRVARSCE-----EELVSLVHETGADTIIINAVYEP 337

Query: 115 NEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKV--YTPFRKALIQN--- 168
               RD L+ + L+ H V  K      L  P S+    + +  +   + F     +N   
Sbjct: 338 WLKERDDLISETLRRHGVELKKHHSYCLYEPDSVSTEGVGLRGIGSVSHFMSCCKRNNSA 397

Query: 169 ---LVQADLRSLPVPA---------IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL 216
              +     R LP P              G +         D+    I   +   E  A 
Sbjct: 398 PIGMPLDAPRCLPAPCNWPESDHLDTLELGKMPHRKDGTLIDWAV-TIRESWDFSEDGAY 456

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
             L  F ++ V +Y ++        TS +SPYL  G +SPR     L E +      PK 
Sbjct: 457 TCLANFLQDGVKHYEKESGRADKPYTSHISPYLHFGQISPRTV---LHEAYFTKKNVPK- 512

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
               +L +L WR+    L+  +P +   +P  P  +   W+ D + L+AW++G TG+P++
Sbjct: 513 ----FLRKLAWRDLAYWLLILFPDM-PSEPVRPAYKSQRWSSDLNHLRAWQKGLTGYPLV 567

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR+L   GWM N  R + ASFLV  L + W  G  +F   LLD D+A N   WQ   
Sbjct: 568 DAAMRELWLTGWMCNYSRHVVASFLVAYLHIHWVHGYRWFQDTLLDADVAINAMMWQNGG 627

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
            +G D   +  + +P       DP G+++R W PEL  +P +YIH P
Sbjct: 628 MSGLDHWNF--VMHPVDSALTCDPYGSYVRKWCPELAGLPDEYIHKP 672


>gi|225442831|ref|XP_002285327.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 150/520 (28%), Positives = 224/520 (43%), Gaps = 69/520 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAK----VIAVFIATPEQWRQHGISARQS----H 59
           S  L+W R  LRI DN AL  A   S+      VI  +   P+       S+R       
Sbjct: 5   SSSLMWFRKGLRIHDNPALQHAAKESNCVYPVFVIDPYFMEPDPNAFSPGSSRAGLNRIR 64

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  SL+ +  SL Q G      +    +  I  L  + +++   +   +  Y+  +++ 
Sbjct: 65  FLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYDTDPYYQALDIKV 124

Query: 120 DKLLEK---RLQHRVICKSFDDSVLL------PP---GSILNHALQMYKVYTPFRKALIQ 167
                     +   V    FD + ++      PP    S L  A Q     +P    L  
Sbjct: 125 KNYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFLKLAGQPSWASSPLLTTLSW 184

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI----DPMFPIGEQNALHILRKFC 223
                      +P +   G    SN+P   +  ++ I       F  GE  AL  LR+  
Sbjct: 185 -----------LPPVGDVGTCEISNVPTVKELGYEEIGQDESTPFKGGESEALKRLRESI 233

Query: 224 KEK--VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
           ++K  V  + + +  P+      T+ LSPYL  G LS R  +  L + + ++     S  
Sbjct: 234 RDKEWVANFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNMKWH-TSPP 292

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIP------WTEKIEWNKDSHLLQAWKQGYTG 332
            S + +L+WR+F      FY +V  G P           ++I WN D  LL AW++  TG
Sbjct: 293 VSLVGQLLWRDF------FY-TVGFGTPNFDRMKGNRICKQIPWNDDDELLAAWREARTG 345

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           +P IDA M QL   GWMH+  R   A FL + DL V W  G + F   L+D D A NNG 
Sbjct: 346 YPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGN 405

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL---- 447
           W W  S  +    Y RI++P   GK++DP G +IRH+LP L ++P +YI+ P  W     
Sbjct: 406 WLW-LSCSSFFYQYNRIYSPISFGKKYDPNGNYIRHFLPILKDMPKEYIYEP--WTAPPS 462

Query: 448 ----DKNDLSLNYPLPIVDHKKA---CHHTLNQYYAAKKQ 480
                K  +  +YP P+V H  A   C   L + YA  K+
Sbjct: 463 IQAKAKCIIGKDYPKPVVCHDSAIKECKRKLAEAYALNKR 502


>gi|322368590|ref|ZP_08043158.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
           DX253]
 gi|320551874|gb|EFW93520.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
           DX253]
          Length = 520

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 133/506 (26%), Positives = 215/506 (42%), Gaps = 86/506 (16%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQ 57
           M   LVW R DLR+ DN+AL  A      + +  F       R++G           + +
Sbjct: 1   MKTALVWFRTDLRVRDNRALAVASEAERLRCVYCFDPREFGSREYGGKDSFRYEKTGSHR 60

Query: 58  SHFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEW---LDSYCLQQRVTKLFYNRQY 112
           + F+  S+  ++ SL ++G  +V ++ +      S+      D  C     T      + 
Sbjct: 61  TRFLRESVEALRISLRERGNELVVRHGRPEEVVPSLAADIDADLVCFHALPTP----EER 116

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
            +     ++L +         +S     L  P  +     ++   +T FR+ + ++   A
Sbjct: 117 AVERAVTERLADPETDVDADVESIWGHTLYHPDDVPVPVAEIDDTFTTFRQTVERS--DA 174

Query: 173 DLRSL--------PVP-----AIRLTGP------VTPSNIPRFFDYPFQAIDP------- 206
           D+R          PVP     A +  G       + P  IP F D     ++P       
Sbjct: 175 DVRPTVDTPTTLPPVPEEVTEAGKREGEGEDGDEIDPGTIPSFADL---GVEPPTRDERR 231

Query: 207 --MFPIGEQNALHILRKF--CKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN 261
              F  GE   L  L ++   ++++  Y E R+ +     +S+LSP+L+ G LSPR  + 
Sbjct: 232 VLDFEGGEPAGLERLERYVWTRDRLREYKETRNGLLGSDYSSKLSPWLNAGCLSPRTVFE 291

Query: 262 ---RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
              R + E V+         +  + EL+WR+F++   A + S    +  I     I+W  
Sbjct: 292 TVQRYERERVE-----NESTYWLVFELLWRDFFQFQFAKHGSQPFKRRGIR-RRTIDWRN 345

Query: 319 DSHL---------------------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                                     + WK+G TG P +DA MR+LN  G+M NR R   
Sbjct: 346 GEGDGDSGHDGGDEGSGDDGDGECEFERWKRGETGIPFVDANMRELNETGYMSNRGRQNV 405

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS L  DL +DWR G  YF ++L+D D ASN G W + A  GNDS    R F+   Q + 
Sbjct: 406 ASVLANDLRIDWRKGAAYFETKLVDYDPASNYGNWAYVAGVGNDS--RNRSFDVLWQAEH 463

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAP 443
           +DP   ++++WLPEL +VP +  H P
Sbjct: 464 YDPDAAYVKYWLPELRDVPDEKAHEP 489


>gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa]
 gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  152 bits (385), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 152/523 (29%), Positives = 229/523 (43%), Gaps = 64/523 (12%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----------R 49
           M A+ + S+  +W R  LRI DN AL  A   SD  V  VF+  P              R
Sbjct: 1   MAASGSGSI--IWFRKGLRIHDNPALEYASKGSDF-VYPVFVIDPHYMEPDPKAFSPGSR 57

Query: 50  QHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
             G++  +  F+  SL+ +  SL + G      +          L  + +++   +   +
Sbjct: 58  LAGLN--RIRFLLESLVDLDTSLKKLGSRLLILRGEPGQVLTRCLKEWGVKKLCFEYDTD 115

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQ- 167
             Y+  ++R   + E      +   S     L  P  I+  +  +    Y  F K   Q 
Sbjct: 116 PHYQALDIR---VKEYASAAGIEVFSPVSHTLFNPADIIQRNGGKPPLTYQSFLKLAGQP 172

Query: 168 ----NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILR 220
               + +   + SLP   +   G    S +P   D  +  I+     F  GE  AL  L+
Sbjct: 173 SWASSPLLTSISSLP--PVGDVGSCEISEVPTIKDLGYGDIEQEWIPFRGGESEALKRLK 230

Query: 221 KFCKEK--VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           +   +K  V  + + +  P+      T+ LSPYL  G LS R  +  L++ + ++  K  
Sbjct: 231 ESISDKEWVANFEKPKGNPSAFVKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVQ-KHT 289

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQG 329
           S   S   +L+WR+F      FY +V  G P     E      +I WN D  LL AW++ 
Sbjct: 290 SPPVSLAGQLLWRDF------FY-TVAFGTPNFDRMEGNKLCKQIPWNDDDELLAAWREA 342

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388
            TG+P IDA M QL   GWMH+  R   A FL + DL + W  G + F   L+D D A N
Sbjct: 343 RTGYPWIDAIMVQLRKWGWMHHLARHSVACFLTRGDLFLHWERGRDVFERLLIDSDWAIN 402

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL- 447
           NG W W  S  +    Y RI++P   GK++DP G +IRH+LP L ++P +YI+ P  W  
Sbjct: 403 NGNWLW-LSCSSFFYQYNRIYSPISFGKKYDPNGDYIRHFLPVLKDMPKEYIYEP--WTA 459

Query: 448 -------DKNDLSLNYPLPIVDH---KKACHHTLNQYYAAKKQ 480
                   K  +  +YP P+V H    K C   L + YA  K+
Sbjct: 460 PPGIQRKAKCIIGRDYPKPVVYHDSASKECKRKLAEAYALNKK 502


>gi|222622395|gb|EEE56527.1| hypothetical protein OsJ_05816 [Oryza sativa Japonica Group]
          Length = 551

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 143/509 (28%), Positives = 224/509 (44%), Gaps = 52/509 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD-AKVIAVFIATPEQWRQHGI-----SARQS----HF 60
           +VW R  LR+ DN AL AA      A++  VF+  P   R         SAR       F
Sbjct: 16  MVWFRKGLRVHDNPALDAARRGGAVARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRF 75

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +   L + G      +  +  D    + +      + KL +    E   + RD
Sbjct: 76  LLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARD 135

Query: 121 K-LLEKRLQHRVICKSFDDSVLLPPGSIL----NHALQMYKVYTPFRKALIQNLVQADLR 175
           K +++      +   S     L  P  I+          Y+ +        + +++    
Sbjct: 136 KKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIME---E 192

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFC--KEKVYY 229
              +P +  TG      +PR  +  +  I      +F  GE  AL  +R+    KE V  
Sbjct: 193 YSELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAK 252

Query: 230 YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           + + +  P+      T+ LSPYL  G LS R  ++ +++ +     K  +   S   +L+
Sbjct: 253 FEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTK-KHTNPPVSLTGQLL 311

Query: 287 WREFYRHLMAFYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           WR+F      FY +V  G P           ++I W ++  L  AW+ G TG+P IDA M
Sbjct: 312 WRDF------FY-TVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAIM 364

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W  S  
Sbjct: 365 IQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCS 423

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LS 453
           +    Y RI++PT  GK++DP G +IRH++P L ++P +YI+    AP S   K +  + 
Sbjct: 424 SFFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIG 483

Query: 454 LNYPLPIVDH---KKACHHTLNQYYAAKK 479
            +YP P+VDH    K C   + + YA+ +
Sbjct: 484 KDYPKPVVDHAIASKECKKMMGEAYASNR 512


>gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2050

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 148/494 (29%), Positives = 220/494 (44%), Gaps = 61/494 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+H  W R  LR+ DN AL AA  +   ++  VFI  P       +   +  F+  +L  
Sbjct: 5   SIH--WFRKGLRLHDNPALMAALRDCK-ELYPVFILDP-HLHNKSVGINRCRFLIGALRD 60

Query: 68  VQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL- 123
           +    ++L+ +  V +           E       Q +VTKL Y    E   + RD+ + 
Sbjct: 61  LDLSLRNLNSRLFVVR-------GKPEEVFPKLFSQWKVTKLTYEYDTEPYSLSRDRTVT 113

Query: 124 ----EKRLQ--HRVICKSFDDSVLL------PPGSILNHALQMYKVYTPFRKALIQNLVQ 171
               E  +Q  +RV    +D   +L      PP +  +    + K+  P R   I     
Sbjct: 114 TLAEESGVQVVYRVSHTLYDTERVLEENNGKPPLTYNSMQAIVKKLGPPKRP--ISAPSM 171

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEK-- 226
            DL+ +  P   L        IP   D    P    +  FP GEQ AL  L    K+   
Sbjct: 172 DDLKGVSTPC--LEDHEKKYGIPTLEDLGHDPAGLPEEKFPGGEQEALRRLEDQMKKTSW 229

Query: 227 VYYYVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           V  + + +  P      T+ LSPY++ G LS R  W RL + +     K  +   S   +
Sbjct: 230 VCNFEKPQTSPNSLSPSTTVLSPYVTFGCLSARTFWWRLSDVYSGK--KHSAPPVSLHGQ 287

Query: 285 LIWREFYRHLMAFYPSVCMGKPFI------PWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
           L+WREF      FY +  +G P        P   +++W+ DS  L AW++  TGFP IDA
Sbjct: 288 LLWREF------FY-TASVGIPNFNKMADNPVCTQVDWDTDSEYLAAWREARTGFPFIDA 340

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GW+H+  R   A FL + DL + W  G++ F   LLDGD A N G WQW ++
Sbjct: 341 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDGDWALNAGNWQWLSA 400

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND-- 451
           +      +FR+++P   GK+ D  G +I+ +LP L   P QYI+    AP S        
Sbjct: 401 SAFFHQ-FFRVYSPVAFGKKTDKNGDYIKKYLPHLKKFPAQYIYEPWKAPQSIQKAAGCI 459

Query: 452 LSLNYPLPIVDHKK 465
           +  +YP PIV H++
Sbjct: 460 IGKDYPHPIVKHEE 473


>gi|307103112|gb|EFN51376.1| hypothetical protein CHLNCDRAFT_7260 [Chlorella variabilis]
          Length = 491

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 140/501 (27%), Positives = 216/501 (43%), Gaps = 42/501 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R  LR+ DN AL AA   +D  +  +FI  P   +   I   +  F+  SL  +  
Sbjct: 2   IIWFRKGLRLHDNPALLAAAAGAD-HLCPIFILDPWFLKSDKIGVNRIQFLLESLTDLDA 60

Query: 71  SLSQKG----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           S   +G    ++    + +    +   L     +  VT+L +    E    RRD  +   
Sbjct: 61  SFRARGSRLLVLRGRSEEAPSCQAAASLPGALQEWGVTRLCFEHDTEPYAKRRDVAV--- 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHA---LQMYKVYTP-----FRKALIQNLVQADLRSLP 178
              R + ++    V+ P    L      LQ      P     F K +      A  R + 
Sbjct: 118 ---RQLAEAAGVEVVAPVSHTLYDPQVLLQRNGGRAPLTMQSFTKLVDGGGCAAGYRCIA 174

Query: 179 VPAIRLTGPVTPSNI--PRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVE 232
            P+      +  S++  P   D  YP     P F  GE  AL  +  +  +K  V  + +
Sbjct: 175 APSWPQAAALVSSSVAVPSLTDIGYPPTGTTP-FKGGESAALARMADYLSDKGWVCAFEK 233

Query: 233 QRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            +  PA      T+ LSPYL  G LSPR    +L++ + +          S   +L+WRE
Sbjct: 234 PKGNPAAFVRPSTTVLSPYLKFGCLSPRLFHAKLQQIYAERNGMHTQPPVSLRGQLLWRE 293

Query: 290 FYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           F+    A  P+     G P     ++I W  D   + AW+   TG+P IDA M QL   G
Sbjct: 294 FFTLCGAAIPNFDRMAGNPI---CKQIPWVDDPERIAAWEHSRTGYPWIDAIMAQLRQQG 350

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           WMH+  R   A FL + DL   W  G+  F   L+D D + N   WQW +++   S  YF
Sbjct: 351 WMHHLARHSVACFLTRGDLWCSWEAGQAVFDKYLIDADWSLNAANWQWLSASAFFSQ-YF 409

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPI 460
           R+++P   GK++D  G +IR +LP L ++P +YI+ P +            +  +YP PI
Sbjct: 410 RVYSPIAFGKQYDKNGDYIRRFLPVLKDMPVRYIYEPWTAPLSVQQAAGCVVGKDYPRPI 469

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
           VDH+ A    + +  AA   S
Sbjct: 470 VDHQAAMKENMARMKAAYGAS 490


>gi|5689255|dbj|BAA82885.1| blue-light photoreceptor [Oryza sativa Japonica Group]
          Length = 681

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/265 (36%), Positives = 142/265 (53%), Gaps = 17/265 (6%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G QNA   L  F    +  Y   R       TS LSPYL  G LS R+ +++++   +  
Sbjct: 225 GWQNADKALAAFLNGPLMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVR---MKQ 281

Query: 271 LIKPKSGAFS-------WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
           L+    G  +       +L  +  RE+ R+L   +P   + KP +       W  D    
Sbjct: 282 LMWSNEGNHAGDESCVLFLRSIGLREYSRYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYF 340

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           + W+QG TG+P++DA MR     GW+H+R+R++ +SF VK L + WR G +YF   LLDG
Sbjct: 341 KVWRQGRTGYPLVDAGMRDSRATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDG 400

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-- 441
           DL S+  GWQ+ + +  D     RI NP ++G +FDP G ++R WLPEL  +PT++IH  
Sbjct: 401 DLESDRLGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHP 460

Query: 442 --APHSWLDKNDLSL--NYPLPIVD 462
             AP S L    + L  NYPLPIV+
Sbjct: 461 WDAPESVLQAAGIELGSNYPLPIVE 485


>gi|32400625|dbj|BAC78798.1| cryptochrome [Oryza sativa Japonica Group]
          Length = 568

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 173/362 (47%), Gaps = 38/362 (10%)

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT- 189
           +I +SF+  +L  P  +++   Q + ++ PF    +          LP   I  +G ++ 
Sbjct: 7   IIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRIN-SGDLSM 65

Query: 190 -PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PS+   F D   +  + +       G QN    L  F    + +Y   R       TS 
Sbjct: 66  CPSDDLIFEDDSEEGSNALLARAWSPGWQNRDKALTAFLNGPLIHYSVNRKKADSASTSL 125

Query: 245 LSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           LSPYL  G LS R+ +              NR  EE   L ++           +  RE+
Sbjct: 126 LSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR----------SIGLREY 175

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R+L   +P     KP +       W  +    + W+QG TG+P++DA MR+L   GW+H
Sbjct: 176 SRYLSFNHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLH 234

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           +R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI N
Sbjct: 235 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDN 294

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHK 464
           P ++G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV   
Sbjct: 295 PQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLD 354

Query: 465 KA 466
           +A
Sbjct: 355 RA 356


>gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio]
          Length = 558

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 156/315 (49%), Gaps = 47/315 (14%)

Query: 188 VTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIP- 237
           VTP ++ R +  P  A        + ++P GE +AL  L K  + +  V  + + R IP 
Sbjct: 180 VTPVDVDRVYAVPSLADLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPRTIPN 239

Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRH 293
             +  T+ LSPYLS+G LS R  ++RL   +     + K+ +    S   +++WREF+  
Sbjct: 240 SLLPSTTGLSPYLSLGCLSVRTFYHRLNSIYA----QSKNHSLPPVSLQGQVLWREFFYT 295

Query: 294 LMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           + +  P        S+C+         +I+W  D   L+ W+   TGFP IDA M QL  
Sbjct: 296 VASATPNFTKMEGNSICL---------QIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQ 346

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W +++      
Sbjct: 347 EGWIHHLARHAVACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFH-K 405

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NY 456
           Y RIF P   G+R DPQG ++R +LP L N P+QYI+ P  W    D+ L        +Y
Sbjct: 406 YTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEP--WKAPEDVQLSAGCIIGKDY 463

Query: 457 PLPIVDHKKACHHTL 471
           P PIV H +A    L
Sbjct: 464 PRPIVSHIEASQRNL 478


>gi|301097563|ref|XP_002897876.1| cryptochrome, putative [Phytophthora infestans T30-4]
 gi|262106624|gb|EEY64676.1| cryptochrome, putative [Phytophthora infestans T30-4]
          Length = 656

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 149/542 (27%), Positives = 228/542 (42%), Gaps = 103/542 (19%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKV-------IAVFIATPEQWRQHGISARQSHF 60
           LVW R DLR+ DN A+ AA       + K+       I ++I    +    G++  Q  F
Sbjct: 92  LVWFRRDLRLHDNLAISAALDWIKQEEEKIPGRKVVFIPLYIVHRPKIMLCGVNRFQ--F 149

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  S+  +  +L+ +G      +     D ++ L       R++ LF++   E   + RD
Sbjct: 150 LLESVSDLADALAARGSRLVVAR----GDGVQVLRRLLPAWRISHLFFDAASEPFAIDRD 205

Query: 121 KL---------LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
                      +E  + H       D         I  +  +  K YT F +AL      
Sbjct: 206 NRAVALARQLGVETHVTHGYTLYDLD-------AVIAGNNGEPPKTYTAFLRALAMQPKP 258

Query: 172 ADLRS----LPVPAI--------------------RLTGPVTPSNIPRFFDYPFQAID-- 205
                    +P P                       + GP     +P   D+ F A +  
Sbjct: 259 PKPLPTPEKVPAPVYLPSELYQQVIDYWQNRLKPDSIAGPEQQFTLPEVTDFGFVAPERH 318

Query: 206 PMFPIGEQNALHILRKFCKE--KVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQC 259
           P    GEQ AL ILR +C+   +V  + + +  PA       T+ LSPYL  G +SPR  
Sbjct: 319 PFIYGGEQIALGILRDYCRNEGRVVKFEKPKTSPAQTTPSASTTSLSPYLYFGSISPRTF 378

Query: 260 WNRLK---EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316
            + ++   E     L    +   S   +L+WREF+ H      +        P   +I+W
Sbjct: 379 LHHVRGIQEHHAKAL---SATPVSLDGQLLWREFF-HCHGRANAYFDKMEESPTCLQIDW 434

Query: 317 ------------NKDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                         D  L     QAW  G TGFP IDA M QL   GWMH+  R   A F
Sbjct: 435 RWHTIPEREEDMTDDDKLARSQFQAWIDGQTGFPWIDAIMIQLKEEGWMHHLARHSVACF 494

Query: 361 LVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           L + DL + W  G E F  +L+D D + N G W W +++   S  YFR+++P+  GK++D
Sbjct: 495 LTRGDLYISWVRGLEVFQERLIDHDWSINCGNWLWLSASYFFSA-YFRVYSPSTFGKKWD 553

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----------NYPLPIVDHKKACHH 469
           P+G FIR ++P L+ +P +YI+ P  W  K  +++          +YP PIVDHK A   
Sbjct: 554 PEGLFIRKYVPALSKMPVKYIYEP--W--KAPMTVQHAAGCLIGKDYPFPIVDHKIAMRR 609

Query: 470 TL 471
           ++
Sbjct: 610 SM 611


>gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio]
          Length = 579

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 156/315 (49%), Gaps = 47/315 (14%)

Query: 188 VTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIP- 237
           VTP ++ R +  P  A        + ++P GE +AL  L K  + +  V  + + R IP 
Sbjct: 201 VTPVDVDRVYAVPSLADLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPRTIPN 260

Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRH 293
             +  T+ LSPYLS+G LS R  ++RL   +     + K+ +    S   +++WREF+  
Sbjct: 261 SLLPSTTGLSPYLSLGCLSVRTFYHRLNSIYA----QSKNHSLPPVSLQGQVLWREFFYT 316

Query: 294 LMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           + +  P        S+C+         +I+W  D   L+ W+   TGFP IDA M QL  
Sbjct: 317 VASATPNFTKMEGNSICL---------QIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQ 367

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W +++      
Sbjct: 368 EGWIHHLARHAVACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFH-K 426

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NY 456
           Y RIF P   G+R DPQG ++R +LP L N P+QYI+ P  W    D+ L        +Y
Sbjct: 427 YTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEP--WKAPEDVQLSAGCIIGKDY 484

Query: 457 PLPIVDHKKACHHTL 471
           P PIV H +A    L
Sbjct: 485 PRPIVSHIEASQRNL 499


>gi|260063633|ref|YP_003196713.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
 gi|88783078|gb|EAR14251.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
          Length = 515

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 192/443 (43%), Gaps = 26/443 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ---- 57
           K    M+  L W RNDLR+TDN  L AAC  S  +V+ VF   P  +R+     R+    
Sbjct: 39  KNGETMTTALYWFRNDLRVTDNPGLLAAC--SSQRVLTVFCFDPADFREGDYGIRRMGPY 96

Query: 58  -SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
            + F+  S+L +++ L    I    H    F    + L     +  VT L   R++  +E
Sbjct: 97  RAGFLRESVLALREQLQGLNISLHIH----FGPPGDILPGMIKKYGVTDLHLQREWTRDE 152

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLR 175
                 + + L   V         L  P  +   +   +  V+T FRK   +++      
Sbjct: 153 CLALDAVREGLPPGVTVHEHYQQFLFHPEDLPYDSFDDIPDVFTGFRKKCEKHVSVRSPE 212

Query: 176 SLPVPAIRLTGPVTPSNIPRF----FDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYY 229
             P     +  P     +P +       P       FP   GE  A   L+++  E  + 
Sbjct: 213 DTPARREAVFAPAGDGGLPGWEALGMAPPRADSRSAFPFRGGEPAAWDRLQEYFWESRFL 272

Query: 230 YVEQRDIPAIQGT---SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
              +R    + GT   ++ SP+L+ G LS RQ +  +K    +  ++     +  + ELI
Sbjct: 273 STYKRTRNGLVGTRYSTKFSPWLANGSLSARQIYREVKR--YEQEVEKNRDTYWLVFELI 330

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR++++++   +         I   E+ +W         W QG T    I+A M++L   
Sbjct: 331 WRDYFKYVSLKHGPKIFAPGGIREVER-DWGASREAFARWTQGETDSDFINANMQELRLT 389

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWM NR R  TAS+  +D+  DWR+G  +F   LLD D+ SN G W + ++ GND  P  
Sbjct: 390 GWMSNRGRQNTASYWSQDMGQDWRLGAAWFQYLLLDYDVHSNWGNWMYNSAVGND--PRN 447

Query: 407 RIFNPTIQGKRFDPQGTFIRHWL 429
           R FNP  Q  R+D  G F R WL
Sbjct: 448 RKFNPEHQASRYDASGKFRRLWL 470


>gi|301617223|ref|XP_002938047.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Xenopus
           (Silurana) tropicalis]
          Length = 523

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 142/487 (29%), Positives = 227/487 (46%), Gaps = 63/487 (12%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHFIYAS 64
           LRNDLR+ DN+ L+ A  N+D +++ ++   P   R +G             +  F+  S
Sbjct: 12  LRNDLRLHDNEVLHWAHRNAD-QIVPLYCFDP---RHYGGTHYFNFPKTGPHRLKFLLES 67

Query: 65  LLQVQKSLSQKGIVFQYHQ------CSNFDDSIEWLDSYCLQQRVTKL---FYNRQY--- 112
           +  ++ +L ++G      +       +     +  + +  L + VT +    YN      
Sbjct: 68  VQDLRNTLKERGSNLLLRRGKPEEIIAGLVKQLGNVSAVTLHEEVTVVPLYSYNPILWPP 127

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQ 167
           + + +R        L HR      +D   LP      H   +  VYT FRKA      ++
Sbjct: 128 DWSGLRYQTFWGSTLYHR------ED---LP----FRHISSLPDVYTQFRKAAETQGKVR 174

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--MFPI--GEQNALHILRKFC 223
           +  Q   R  P+P+    G V P++  + FD      DP   FP   GE  AL  L  + 
Sbjct: 175 STFQMPDRLKPLPSGLEEGSV-PTH--QDFDQQDPLTDPRSAFPCCGGETQALQRLHHYF 231

Query: 224 KEK--VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            E   V  Y + R+ +  I  +++ +P+L++G +SPR  + ++++   +         + 
Sbjct: 232 WETNLVASYKDTRNGLIGIDYSTKFAPWLALGCISPRYIYEQIRK--YEKERTANQSTYW 289

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            + EL+WR+++R +   Y         +   + + W KD  L  AWK+G TG P +DA M
Sbjct: 290 VIFELLWRDYFRFVALKYGRRIFFLRGLQ-DKDVPWKKDPKLFDAWKEGRTGVPFVDANM 348

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   G+M NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GN
Sbjct: 349 RELAMTGFMSNRGRQNVASFLTKDLXIDWRLGAEWFEYLLVDYDVCSNYGNWLYSAGIGN 408

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN- 455
           D     R FN   QG  +D  G +IR W+PEL  +     H P     + L  +++SL  
Sbjct: 409 DPREN-RKFNMIKQGLDYDAGGDYIRLWVPELQQIKGGDAHTPWALSTASLAHSNVSLGE 467

Query: 456 -YPLPIV 461
            YP PIV
Sbjct: 468 TYPYPIV 474


>gi|147902555|ref|NP_001084438.1| cryptochrome DASH [Xenopus laevis]
 gi|82239825|sp|Q75WS4|CRYD_XENLA RecName: Full=Cryptochrome DASH
 gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis]
          Length = 523

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 228/484 (47%), Gaps = 47/484 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------GISARQSHFIY 62
           V +  LRNDLR+ DN+ L+ A  N+D +++ ++   P  +              +  F+ 
Sbjct: 7   VIICLLRNDLRLHDNEVLHWAHRNAD-QIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLL 65

Query: 63  ASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWL---DSYCLQQRVTKLFYNRQYEINE 116
            S+  ++ +L +KG   ++ +       +D ++ L    +  L +  TK     + ++  
Sbjct: 66  ESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATK----EETDVES 121

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKAL-----IQNLV 170
             +       +++    ++F  S L     +   H   +  VYT FRKA+     ++   
Sbjct: 122 AVKQACTRLGIKY----QTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTF 177

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--MFPI--GEQNALHILRKFCKEK 226
           Q   +  P+P+    G V PS+    FD      DP   FP   GE  AL  L  +  E 
Sbjct: 178 QMPDKLKPLPSGLEEGSV-PSH--EDFDQQDPLTDPRTAFPCSGGESQALQRLEHYFWET 234

Query: 227 --VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             V  Y + R+ +  +  +++ +P+L++G +SPR  + ++ +   +         +  + 
Sbjct: 235 NLVASYKDTRNGLIGLDYSTKFAPWLALGCVSPRYIYEQIGK--YEKERTANQSTYWVIF 292

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL+WR+++R +   Y         +   + I W +D  L  AWK+G TG P +DA MR+L
Sbjct: 293 ELLWRDYFRFVALKYGRRIFFLRGLQ-DKDIPWKRDPKLFDAWKEGRTGVPFVDANMREL 351

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              G+M NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND  
Sbjct: 352 AMTGFMSNRGRQNVASFLTKDLGIDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPR 411

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLSLN--YP 457
              R FN   QG  +D  G +IR W+PEL  +     H P    ++ L   +LSL   YP
Sbjct: 412 EN-RKFNMIKQGLDYDSGGDYIRLWVPELQQIKGGDAHTPWALSNASLAHANLSLGETYP 470

Query: 458 LPIV 461
            PIV
Sbjct: 471 YPIV 474


>gi|72115950|ref|XP_788938.1| PREDICTED: similar to Cry5 protein [Strongylocentrotus purpuratus]
 gi|115955764|ref|XP_001189626.1| PREDICTED: similar to Cry5 protein [Strongylocentrotus purpuratus]
          Length = 559

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 137/500 (27%), Positives = 219/500 (43%), Gaps = 53/500 (10%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ--- 69
           W R  LRI DN AL  A   +      +FI  P       +   +  F+  +L  +    
Sbjct: 44  WFRKGLRIHDNPALLTAIQGTKV-FRPIFILDPHFIESEKVGINRWRFLLETLQDLDYSF 102

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L  +  V + +  + F +  +       +  VT+L +    E    RRD+ + +    
Sbjct: 103 RALGTRLFVVRGNPTTVFPEIFK-------KWNVTRLTFEVDTEPYARRRDQEVIE---- 151

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKV--YTP---FRK--ALIQNLVQADLRSLPVPAI 182
             + K  D  V+      L    +  K   Y P   +++   L+  +    +  LP    
Sbjct: 152 --LAKKNDVEVITKVSHTLYDTERTIKANKYKPPMTYQRMVGLLSEIGAPAIPELPPLMA 209

Query: 183 RLTGPVTPS--------NIPRFFDY--PFQAIDP-MFPIGEQNALHILRKFCKEK--VYY 229
             TG  TP          +P   D     + + P ++P GE   L  +      K  V  
Sbjct: 210 NFTGVATPVKPDHDNEYGVPSLEDLGLDLEGLGPRLYPGGETEGLQRMDLHLARKSWVCG 269

Query: 230 YVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL--LIKPKSGAFSWLNEL 285
           + + +  P      T+ LSPYL  G LSPR+ +  +KE +       KP     S + +L
Sbjct: 270 FEKPKTSPNSLEPSTTVLSPYLKWGCLSPRKFYYAIKEVYAQQTNCTKP---PVSLMGQL 326

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           IWREF+  + A  P+    +   P   ++ W+++   L AWK+G TG+P IDA M QL T
Sbjct: 327 IWREFFYTVAAGTPNFHQMEEN-PICIQVPWDENPEFLAAWKEGRTGYPYIDAIMTQLRT 385

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL   W  G+E F   LLD D + N   W W +S+      
Sbjct: 386 EGWIHHLARHSAACFLTRGDLWQSWVKGQEVFDEWLLDADYSLNAANWMWLSSSAFFHQ- 444

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPL 458
           Y+R+++P + GK+ D  G +IR ++P LN +P +YI+    AP S  +     +  +YP 
Sbjct: 445 YYRVYSPVVFGKKTDKTGEYIRKYIPALNKLPAEYIYEPWTAPRSVQEAAGCIIGRDYPR 504

Query: 459 PIVDHKKACHHTLNQYYAAK 478
           PIVDH       + +   A+
Sbjct: 505 PIVDHSIVSKRNIGRMKDAR 524


>gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis]
 gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis]
          Length = 556

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 148/284 (52%), Gaps = 28/284 (9%)

Query: 206 PMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWN 261
           P +  GE  AL  L +  +++  V  + + + +P   +  T+ LSPY S G LS R  ++
Sbjct: 207 PNWKGGESEALCRLEQHLEKQGWVANFQKPQTVPNSLLPSTTGLSPYFSFGCLSARVFYH 266

Query: 262 RLKEEFVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEW 316
           RL     ++  + K+ +    S   +L+WREF+    +  P+    +G P      +IEW
Sbjct: 267 RLS----NIYAQSKNHSLPPVSLQGQLLWREFFYTAASSTPNFTHMVGNPI---CLQIEW 319

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEY 375
            K+   LQ W++G TGFP IDA M QL+  GW+H+  R   A FL + DL + W  G + 
Sbjct: 320 YKNEEQLQKWREGKTGFPWIDAIMAQLHEEGWIHHLARHAVACFLTRGDLWISWEEGMKV 379

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           F   LLD D + N G W W +++      Y RIF P   G+R DP+G +IR +LP L N 
Sbjct: 380 FEELLLDADYSINAGNWMWLSASAFFH-HYTRIFCPVRFGRRTDPEGNYIRKYLPVLKNF 438

Query: 436 PTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTL 471
           P +YI+AP  W    +        +  +YPLP+VDH  A  H L
Sbjct: 439 PAKYIYAP--WTAPEEIQKQSGCLIGKDYPLPMVDHTTASEHNL 480


>gi|303287382|ref|XP_003062980.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455616|gb|EEH52919.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 561

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 148/496 (29%), Positives = 215/496 (43%), Gaps = 68/496 (13%)

Query: 1   MKATTAMSVH-LVWLRN-DLRITDNKALYAAC-----HNSDAKVIAVFIATP-----EQW 48
           M A  A S   L+W R  DLR+ DN  + AA       + D  V+ VF   P       W
Sbjct: 1   MPADDAASARVLLWFRGTDLRLRDNLVVDAASALVASGSGDVDVLPVFCFDPRTFAASAW 60

Query: 49  RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
                  R++ F+  S+L +++SL   G           +D I     Y L+     +  
Sbjct: 61  GTPKTGGRRARFLLESVLDLKRSLRDVGSDLLV-AVGKPEDVIP---RYLLEGGTNVVLT 116

Query: 109 NRQYEINEVRRD-------KLLEKRLQHRVICKS----FDDSVLLPPGSILNHALQMYKV 157
             +    E R D       K+   +   R +  S     DD   +P       A  +   
Sbjct: 117 QEEVHQEERRVDAAIASAVKIANPKNAMRTVWNSTMYHVDD---IP---FNADASDVPNG 170

Query: 158 YTPFR-KALIQNLVQADLRSLPVPAIRLTGPVTPSNI----PRFFDYPFQAIDPM----- 207
           +TPFR K   +  V+A   S    A+ L      +++    P   D PF   D       
Sbjct: 171 FTPFRNKVESKATVRAPAPSPKPGALPLAKASIDASVLEYEPSLDDLPFATEDERARAKA 230

Query: 208 ---------FPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLS 255
                    F  GE  AL  +  +    EK+  Y E R+ +     +S+LSP+L+ G +S
Sbjct: 231 PTHPNAVLPFEGGETAALARVEYYVWESEKIKTYFETRNGMLGGDYSSKLSPWLAHGCVS 290

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY-----RHLMA-FYPSVCMGKPFIP 309
            R   +R   ++    ++ KS  +  + ELIWR+F+     +H  A F P    G+    
Sbjct: 291 ARHV-HREVRKYERERVENKS-TYWLIFELIWRDFFIYFAKKHGNAIFTPHGTAGRGGT- 347

Query: 310 WTEKIE-WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           WT     W  D   L+AWK+G TGFP++DA MR+L   G+M NR R   AS+L  D  VD
Sbjct: 348 WTGGAGPWRDDPAALKAWKEGKTGFPLVDANMRELAATGFMSNRGRQNVASWLCLDAGVD 407

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+G EYF S L+D D A+N G W  AA      V  F I     Q K +DP G +++ W
Sbjct: 408 WRLGAEYFESALIDYDCAANWGNWVSAAGLTGGRVNKFNIAK---QTKDYDPDGRYVKTW 464

Query: 429 LPELNNVPTQYIHAPH 444
           +PEL +VP  ++  P 
Sbjct: 465 VPELKDVPKGFVADPR 480


>gi|119502978|ref|ZP_01625063.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2080]
 gi|119461324|gb|EAW42414.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2080]
          Length = 433

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 204/455 (44%), Gaps = 44/455 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-ATPEQW-RQHGISARQSHFIYASLLQ 67
           HL W RNDLR+ DN A+  A H +   ++ V++   P  W    G+ A++  F+  SL +
Sbjct: 3   HLHWFRNDLRLRDNPAI--ASHTAADSLLCVYLMPKPRPWCNLVGVGAQRERFLRESLQE 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L+++G      + S      + +  + + +  T      Q        D+ L   L
Sbjct: 61  LHLQLAEQGQALMVLEGSPELVLPDLVARFAITEVSTTFTPGSQERKTLAYLDQKLPVPL 120

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIR 183
           Q HR        + L  P  +      + KV++ FR+A+ +  V+    S   LP P   
Sbjct: 121 QVHR-------GNSLFEPSDLPFELQDLPKVFSGFRRAVEKLNVRGPSPSTEVLPPPPAA 173

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQ 240
               + P++I +    P        P G    L  LR+F      +  Y E R+ + A+ 
Sbjct: 174 QFDAIPPADISKPTMLPL-------PGGRSAGLRRLRQFVFDDRSITQYKETRNCLDALD 226

Query: 241 GTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           G+S LSP+L+ G LS R+  +   R + E +          +    EL+WREF+ H  A 
Sbjct: 227 GSSTLSPWLANGNLSVREVAHEVFRFERENLS-----NESTYWLFFELLWREFF-HWRAV 280

Query: 298 YPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                M K     + KI  N  D      W  G T FP+++A MRQL   GWM NR R I
Sbjct: 281 VDDAQMFK-IGGGSGKIRANTFDPRNFARWCAGDTNFPLVNALMRQLVATGWMSNRGRQI 339

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS L+ +L VDWR G  +F   L+D D+ SN G WQ+ A  G+D     R FN   Q  
Sbjct: 340 AASCLINELKVDWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGSDPRGG-RHFNIDKQAG 398

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           ++DPQG F   W     + P+Q    PH  +D  D
Sbjct: 399 QWDPQGVFTAKW---GGDRPSQ----PHYVIDAAD 426


>gi|257388282|ref|YP_003178055.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
 gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
          Length = 483

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 134/497 (26%), Positives = 214/497 (43%), Gaps = 64/497 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHF 60
           MS  LVW R DLR  DN  L  A   ++A  +      P++    G      +   ++ F
Sbjct: 1   MSTVLVWFRRDLRCHDNATLRRAV--AEADTVVPLYCLPDRLTGEGMFGLDRVGPHRAQF 58

Query: 61  IYASLLQVQKSLSQK-----------GIVFQYHQCSNFD-DSIEWLDSYCLQQRVTKLFY 108
           +  SL  +++SL  +           G V        FD D++ W      ++R      
Sbjct: 59  LIESLADLRESLRDRDGELYVRSGDPGTVVP-EAAEEFDADAVYWQALPGPEERDEAGSV 117

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
                   +  +      L HR       D +  PP  I +        +TP++      
Sbjct: 118 RAGLADAGIDSETFWTHTLYHR-------DDLPRPPDEIED-------TFTPWKDRTEAK 163

Query: 169 LVQADLRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPM--------FPIGEQNAL 216
                 +  P     P           ++P   D+ F   +          +  GE   L
Sbjct: 164 ATVRPPKPAPEWVHAPNGGRRASSGADDLPTLADFGFGEDEATVDDRGVLDWTGGETAGL 223

Query: 217 HILRKFCKEK--VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
             +  +  E+  +  Y E R+ +     +S+ SP+LS G LSPRQ    +++   D +  
Sbjct: 224 DRVATYVWERDCLREYRETRNGLVGADYSSKFSPWLSFGCLSPRQIHREVEQYETDRV-- 281

Query: 274 PKSGAFSWLN-ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
            ++ +  WL  EL WR+F+++ +A Y +       I   + I W +D    + W +G TG
Sbjct: 282 -ENDSTYWLVFELTWRDFFQYQLAKYGAKWFQPGGIRDRDDIRWRRDRAQFERWARGETG 340

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
            P +DA MR+LN  G++ NR R   ASFL  +L +DWR+G  YF S+L+D D+ASN   W
Sbjct: 341 IPFVDANMRELNATGYVSNRGRQNVASFLSNNLRIDWRLGAAYFESRLVDYDVASNWCNW 400

Query: 393 QWAASTGNDSV-PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-----HSW 446
            + +  GNDS   YF I     Q   +DP+G ++  W PEL+ +P +Y+H P     H  
Sbjct: 401 AYQSQVGNDSRDSYFEIVG---QATHYDPEGAYVTRWCPELSALPPEYVHEPWTMSEHEQ 457

Query: 447 LDKN-DLSLNYPLPIVD 462
            D   +L  +YP P++D
Sbjct: 458 ADYGVELGTDYPAPMID 474


>gi|145341190|ref|XP_001415696.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575919|gb|ABO93988.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 551

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 141/511 (27%), Positives = 223/511 (43%), Gaps = 70/511 (13%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIA---VFIATPEQWRQHGIS 54
           M  ++  +  +VW RNDLR+ DN  +  A      SDA  +    VF  T  +  + G++
Sbjct: 1   MATSSPRTRVIVWFRNDLRLLDNAVVARAAALRGQSDAAEVVPVYVFDETFFKTSKRGLA 60

Query: 55  ---ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
              A +  F    +  ++++L   G      +C   +D I  L       + T +    +
Sbjct: 61  RFGAGRGKFTIECVDDLKRALRGVGSDLLV-RCGKTEDVITELTLTGANDK-TIVLTQTE 118

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY-----------KVYTP 160
               E   D+ +E+  + R        S+    GS L HA  +             V+TP
Sbjct: 119 VTSEETDMDRAVERASKERARSGGASASMERLWGSTLYHADDLPYDFAGGLHDLPDVFTP 178

Query: 161 FRKALIQNLVQADLRSL-PVPAIRLTGPVTPSN-----IPRFFDYPFQA--IDPM----- 207
           FR  +     +  +R++ P P     G V  S      +P   D PF +  I P      
Sbjct: 179 FRNKVES---KCSVRAVVPAPTANALGSVPASVAGLDWMPEPKDLPFASAEIAPACEKWL 235

Query: 208 -----------FPIGEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGV 253
                      F  GE  AL  ++ +  +      Y+  +  +     +++L+P+L++G 
Sbjct: 236 KDGADERSVLEFKGGESQALARVKYYLWDSDLLATYFETRNGMLGGDYSTKLAPWLALGC 295

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF---IPW 310
           +SPR   + ++  +    ++ KS  +  + ELIWR+F++    F+      K F      
Sbjct: 296 VSPRYVVSEIRR-YESARVENKS-TYWVIFELIWRDFFK----FFALKHGNKIFHLDGTA 349

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
                W  D  +L+AWK G TG+P+IDA MR+L   G+M NR R   AS+L  D  VDWR
Sbjct: 350 NRTASWKSDEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGVDWR 409

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G ++F   LLD D ASN G W  AA      +  F I     Q K +DP G +++ W+P
Sbjct: 410 HGADWFEHHLLDYDTASNWGNWCAAAGMTGGRINRFNIAK---QTKDYDPSGDYVKRWIP 466

Query: 431 ELNNVPTQYI----HAPHSWLDKNDLSLNYP 457
           EL  +P  YI     AP    D+  +SL+YP
Sbjct: 467 ELREIPAAYITEPNQAPRELRDR--ISLDYP 495


>gi|28279917|gb|AAH44204.1| Cry5 protein [Danio rerio]
          Length = 545

 Score =  150 bits (379), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 147/502 (29%), Positives = 222/502 (44%), Gaps = 64/502 (12%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           KATT     + W R  LR+ DN AL AA  +    +  +F+  P   +   I   +  F+
Sbjct: 23  KATTMSHNTIHWFRKGLRLHDNPALIAALKDC-RHIYPLFLLDPWFPKNTRIGINRWRFL 81

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SL +        + S      E L     Q ++T+L +    E     RDK
Sbjct: 82  IEALKDLDSSLKKLNSRLFVVRGS----PTEVLPKLFKQWKITRLTFEVDTEPYSQSRDK 137

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSIL---NHALQMYKVYTPFRKALIQNLVQA---DLR 175
            + K      + K +   V       L   +  +      TP     +Q++V+A     +
Sbjct: 138 EVMK------LAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKK 191

Query: 176 SLPVPAIR-LTGPVTPSN--------IPRFFDYPF--QAIDP-MFPIGEQNALHILRKFC 223
            +P P    + G  TP +        IP   D      ++ P +FP GEQ AL  L +  
Sbjct: 192 PIPAPTNEDMRGVSTPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHM 251

Query: 224 KEK--VYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA- 278
           +    V  + + +  P   I  T+ LSPY+  G LS R  W RL + +     K  S   
Sbjct: 252 ERTNWVCKFEKPKTSPNSLIPSTTVLSPYVRFGCLSARIFWWRLADVYRG---KTHSDPP 308

Query: 279 FSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
            S   +L+WREF+       P        S C+         +++W+ +   L AW++  
Sbjct: 309 VSLHGQLLWREFFYTTAVGIPNFNKMEGNSACV---------QVDWDNNPEHLAAWREAR 359

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389
           TGFP IDA M QL   GW+H+  R   A FL + DL + W  G++ F   LLD D + N 
Sbjct: 360 TGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNA 419

Query: 390 GGWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APH 444
           G WQW +AST      YFR+++P   GK+ D  G +I+ +LP L   PT+YI+    AP 
Sbjct: 420 GNWQWLSASTFFHQ--YFRVYSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPR 477

Query: 445 SWLDKND--LSLNYPLPIVDHK 464
           S  ++    +  +YP PIVDH+
Sbjct: 478 SVQERAGCIVGKDYPRPIVDHE 499


>gi|298708262|emb|CBJ48325.1| cryptochrome 2 [Ectocarpus siliculosus]
          Length = 571

 Score =  150 bits (379), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/311 (32%), Positives = 158/311 (50%), Gaps = 28/311 (9%)

Query: 156 KVYTPFRKALIQNL---------VQADLRSLPVPAIRLTGPVT-PSNIPR-----FFDYP 200
           +++T FRK++             + +  R +P    +  G  + P  IP          P
Sbjct: 188 EIFTQFRKSVESKYSCKMRPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGTAP 247

Query: 201 FQAIDPMFPI--GEQNALHILRKFC--KEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLS 255
            +    +FP   GE   L  ++ +   ++++  Y   R+     G +S+ SP+L++G LS
Sbjct: 248 ERDARSVFPFNGGETAGLRRVQSYIWDEDRLREYKVTRNGLLGSGFSSKFSPWLALGCLS 307

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREFYRHLMAFYPSVC--MGKPFIPWTE 312
           PR     +++   D +    +    WL  EL+WR+F+R+      +    +G P    T 
Sbjct: 308 PRTIVKEIRKYETDRIANDST---YWLIFELLWRDFFRYSAVKNGNSIFHLGGPRRD-TG 363

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
           +  W  D+  L+AWK+G TG+P+IDA MR+L   G+M NR R + ASF  +DL +DWR+G
Sbjct: 364 RQRWLDDAGSLEAWKEGETGYPLIDANMRELKASGFMSNRGRQVVASFFTRDLQMDWRLG 423

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
            E+F   LLD D ASN G W + A  G+D     R FN   Q K +D +G ++RHWLPEL
Sbjct: 424 AEHFEEYLLDHDPASNWGNWNYVAGVGSDPREG-RYFNIEKQAKTYDAEGAYMRHWLPEL 482

Query: 433 NNVPTQYIHAP 443
             +PT  +  P
Sbjct: 483 AALPTTALQTP 493


>gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis]
 gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis]
          Length = 537

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 150/513 (29%), Positives = 224/513 (43%), Gaps = 63/513 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----------QHGISAR 56
           S  L+W R  LR+ DN AL  A   S   V  VF+  P               + GI+  
Sbjct: 6   SSSLMWFRKGLRVHDNPALDYASKGSKF-VYPVFVIDPHYMEPDPNAFSPGSSRAGIN-- 62

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F+  SL+ +  SL + G      +       I  L  + +++   +   +  Y+  +
Sbjct: 63  RIRFLLESLVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIWDVEKLCFEYDTDSYYQALD 122

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQ-----NLV 170
               K+ E     R+   S     L  P  I+  +  +    Y  F K   Q     + +
Sbjct: 123 A---KVKEYASSARIEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFLKVAGQPSWASSPL 179

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFC--K 224
              + SLP   +   G    S +P   +  +  ++      F  GE  AL  LR+    K
Sbjct: 180 PTTISSLP--PVGDVGSCEISEVPTLEELGYGDVEQDEWAPFRGGESEALKRLREKITNK 237

Query: 225 EKVYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           E V  + + +  P+      T+ LSPYL  G LS R  +  L++ + ++  K  S   S 
Sbjct: 238 EWVANFEKPKGDPSAFMKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNV-GKHTSPPVSL 296

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPI 335
           L +L+WR+F      FY +V  G P           ++I WN+D  LL AW++  TG+P 
Sbjct: 297 LGQLLWRDF------FY-TVAFGTPNFDQMKENRICKQIPWNEDDELLSAWREARTGYPW 349

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GWMH+  R   A FL + DL V W  G   F   L+D D A NNG W W
Sbjct: 350 IDAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRNVFERLLIDSDWAINNGNWLW 409

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------- 447
             S  +    Y RI++P   GK++DP G +I+H+LP L ++P +YI+ P  W        
Sbjct: 410 -LSCSSFFYQYNRIYSPISFGKKYDPNGNYIKHFLPVLKDMPKEYIYEP--WTAPLSVQT 466

Query: 448 -DKNDLSLNYPLPIVDH---KKACHHTLNQYYA 476
             K  +  +YP P+V H    K C   L + YA
Sbjct: 467 KAKCIIGRDYPKPVVAHDSASKECKKKLAESYA 499


>gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
          Length = 540

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 143/522 (27%), Positives = 219/522 (41%), Gaps = 64/522 (12%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A+S+H  W R  LR+ DN AL AA   +  +V  VF+  P   +   +   + +F+  SL
Sbjct: 5   AVSIH--WFRKGLRLHDNAALLAALKGAK-QVYPVFVLDPHFAKPEFVGVVRYNFLLESL 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + KSL   G      +       ++ L+    +  VT+L + R  E     RD     
Sbjct: 62  RDLDKSLRTLGSRLYVLK----GKPLQALEEKFKEWEVTRLTFERDTEPYAKLRD----- 112

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             Q R + +     V+   G  L+   Q + K     +  L  +      R L      L
Sbjct: 113 -TQARELAEKHGIEVITTVGHTLHDPEQYIAKAGGADKIPLTYSSFGTLFRRLGKVPAAL 171

Query: 185 TGPVTPS------------------NIPRFFDYPFQAIDP----MFPIGEQNALHILRKF 222
           + P                      ++P   D  ++  D      FP GE  AL  +R+ 
Sbjct: 172 SAPTKEDFPQSSTLVRTDALDDHRFDVPSLKDMGYEWNDDEHEVRFPGGETEALERMRRH 231

Query: 223 CKEKVY--YYVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            + K +  ++ + +  P      T+ LSPYL  G LSPR  ++ L   + +     K   
Sbjct: 232 LQRKAWIAHFEKPKTSPNTLEPSTTGLSPYLKFGCLSPRLFYHELARVYAEYRDHAKP-P 290

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S   +L+WREF+ H+  +               +I+W+ +  LL AW+   TG+P IDA
Sbjct: 291 VSLHGQLLWREFF-HMCGYAVKNFDRMEGNRICRQIDWDTNDALLAAWENARTGYPWIDA 349

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GW+H+  R   A FL + DL   W  G + F   L+D D   N+  W W  S
Sbjct: 350 CMTQLRREGWLHHLARHAVACFLTRGDLYQSWEKGAQVFDRLLVDADWHLNSANWMW-LS 408

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451
             +    YFR+++P   GK+ DP G +IR +LP+L   P +YI+ P  W           
Sbjct: 409 CSSFFYQYFRVYSPVAFGKKTDPSGAYIRKYLPQLKAFPDKYIYEP--WKAPPGVQRSCG 466

Query: 452 --LSLNYPLPIVDHK----------KACHHTLNQYYAAKKQS 481
             +  +YP PIVDH           +AC+  L Q   AKK +
Sbjct: 467 CIIGKDYPEPIVDHAEVSAANKARIRACYDALKQAEKAKKTT 508


>gi|167526345|ref|XP_001747506.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773952|gb|EDQ87586.1| predicted protein [Monosiga brevicollis MX1]
          Length = 486

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 133/475 (28%), Positives = 214/475 (45%), Gaps = 52/475 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++ S+ L W R   R+ DN AL+ A   +  +V  VF+  P   +   +   + +F+  S
Sbjct: 2   SSSSISLHWFRKGQRLHDNPALWRALRGA-TQVYPVFVIDPHFAKPENVGVLRYNFLLES 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + + L  +G+  + +      +  E L     + +VT+L Y    E     RD  + 
Sbjct: 61  LKDLDEQL--RGLGSRLYVLRGKPE--EQLPKKFKEWKVTRLTYELDTEPYARVRDAAIN 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                  + K  +  V+   G +L H  + Y      +K    +  + D +S  VP ++ 
Sbjct: 117 D------LAKKHNVEVIAEAGHML-HDPESY-----LKKCGGASKDRQD-KSYDVPTLKE 163

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAI--Q 240
            G  +P   P+           +FP GE+ AL  L  F K+K  +  + + +  PA    
Sbjct: 164 MG-YSPIKAPQMV---------LFPGGEREALKRLEHFIKKKNWIATFEKPKTNPAALDP 213

Query: 241 GTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            T+ LSPY+ +G LS R+ W    ++ +E  D    P+S       +L++RE + HL  +
Sbjct: 214 DTTGLSPYMKMGCLSVRKFWYDVQKVYDEKKDHSTPPES----LHGQLLFRELF-HLCGY 268

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                          +I+W+     L AW+   TG+P IDA M QL   GWMH+  R   
Sbjct: 269 AVKNFDKMKGNRICRQIDWDYSEKFLDAWENSKTGYPWIDACMAQLRHEGWMHHLARHAV 328

Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           A FL + DL   W  G   F   L+D D   NN  W W  S  +    YFR+++P   G+
Sbjct: 329 ACFLTRGDLYQSWEHGARIFEKHLVDADWHLNNANWMW-LSCSSFFYQYFRVYSPIGFGQ 387

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDH 463
           ++D +G FIR +LP L ++P +YI+ P  W    +        +  +YP PIVDH
Sbjct: 388 KYDKEGAFIRKYLPVLKDMPKKYIYEP--WKAPKEVQQKAKCIIGKDYPEPIVDH 440


>gi|194332801|ref|NP_001123706.1| hypothetical protein LOC100170456 [Xenopus (Silurana) tropicalis]
 gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis]
          Length = 557

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/279 (35%), Positives = 146/279 (52%), Gaps = 28/279 (10%)

Query: 211 GEQNALHILRKFCKEK--VYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           GE  AL  L +  +++  V  + + + IP   +  T+ LSPY S+G LS R  ++RL   
Sbjct: 212 GESEALSRLEQHLEKQGWVANFKKPQTIPNSLLPSTTGLSPYFSLGCLSVRVFFHRLS-- 269

Query: 267 FVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNKDSH 321
             ++  + K+ +    S   +L+WREF+  + +  P+    +G P      +I+W K+  
Sbjct: 270 --NIYAQSKNHSLPPVSLQGQLLWREFFYTVASSTPNFTHMVGNPI---CLQIDWYKNEE 324

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380
            LQ WK+  TGFP IDA M QL+  GW+H+  R   A FL + DL + W  G + F   L
Sbjct: 325 QLQKWKEAKTGFPWIDAIMTQLHNEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEFL 384

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD D   N G W W +++      Y RIF P   GKR DP+G +IR +LP L N P +YI
Sbjct: 385 LDADYCINAGNWMWLSASAFFH-HYTRIFCPVRFGKRSDPEGNYIRKYLPVLKNFPAKYI 443

Query: 441 HAPHSWLDKND--------LSLNYPLPIVDHKKACHHTL 471
           + P  W    +        +  +YPLP+VDHK A  H L
Sbjct: 444 YEP--WTAPEEIQKQAGCLIGKDYPLPMVDHKTASEHNL 480


>gi|327282060|ref|XP_003225762.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
          Length = 530

 Score =  149 bits (377), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 141/509 (27%), Positives = 224/509 (44%), Gaps = 65/509 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           +S+H  W R  LR+ DN AL AA  NS A++  +FI  P   +   +S  +  F+  SL 
Sbjct: 4   VSIH--WFRKGLRLHDNPALLAAMKNS-AEIYPIFILDPWFPKNMQVSINRWRFLIESLK 60

Query: 67  QVQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            + +SL +   +  V +      F +          + +VT+L +    E    R  +++
Sbjct: 61  DLDESLKKLNSRLFVVRGRPAEVFPELF-------TKWKVTRLAFEVDTEPYARRDAEVV 113

Query: 124 EKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPA 181
               +H V + +    ++      I+ ++ +    YT      +Q LV +      PVPA
Sbjct: 114 RLAAEHGVQVIQKVSHTLYDTERIIVENSGKAPLTYT-----RLQTLVASLGPPKQPVPA 168

Query: 182 IRLTG---PVTPSNIPRFFDY-----------PFQAIDPMFPIGEQNALHILRKFCKEKV 227
            +L       TP       +Y           P  A   ++P GE  AL  L    K   
Sbjct: 169 PKLEDMKDCCTPVKEDHDLEYGTPSYEELGQDPKTAGPHLYPGGETEALARLDLHMKRTS 228

Query: 228 ----YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
               +   E         T+ LSPY+  G LS R  W +L E +     K      S   
Sbjct: 229 WVCNFKKPETHPNSLTPSTTVLSPYVKFGCLSVRMFWWKLAEVYQGR--KHSDPPVSLHG 286

Query: 284 ELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           +L+WREF+    A  P+        VC+         +++W+ +   L+AW++G TG+P 
Sbjct: 287 QLLWREFFYTAGAGIPNFDRMENNPVCV---------QVDWDNNQEYLRAWREGQTGYPF 337

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL T GW+H+  R   A FL + DL + W  G++ F   LLD D + N   WQW
Sbjct: 338 IDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAANWQW 397

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN 450
            +++      +FR+++P   GK+ D  G +I+ +LP L      YI+    AP S  ++ 
Sbjct: 398 LSASAFFHQ-FFRVYSPVTFGKKTDKNGEYIKKYLPFLRKFSNDYIYEPWKAPRSLQERA 456

Query: 451 D--LSLNYPLPIVDHKKACHHTLNQYYAA 477
              +  +YP PIV+H+K     L +  AA
Sbjct: 457 GCIIGQDYPKPIVEHEKVYKRNLERMKAA 485


>gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299]
 gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299]
          Length = 566

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/249 (37%), Positives = 128/249 (51%), Gaps = 20/249 (8%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           T+ LSPYL  G +SPR  W+ L+    V+L  K      S   +L+WREFY   +A Y +
Sbjct: 300 TTALSPYLKFGCVSPRTFWHELRAVLDVELGGKHSKPPESLEGQLLWREFY--YLAGYGT 357

Query: 301 VC---MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                M    I    +I W  D   L AW++  TGFP IDA M QL   GWMH+  R   
Sbjct: 358 PNYDRMAGNRI--CRQIPWTWDEERLAAWEESRTGFPWIDACMMQLKQEGWMHHLARHAV 415

Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           A FL + DL V W  G   F  +L+D D A NNG W W  S       YFR++ P   GK
Sbjct: 416 ACFLTRGDLFVHWEAGAAVFDRELVDADWALNNGNWMW-LSCSCFFYQYFRVYGPVSFGK 474

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACH 468
           ++D +G +IR +LP+L ++P +YI+ P  W    +        + ++YP PIVDH  A  
Sbjct: 475 KYDKEGAYIRKYLPQLKDMPAKYIYEP--WTAPIEVQRKAGCVVGVDYPAPIVDHAVASK 532

Query: 469 HTLNQYYAA 477
             + +  AA
Sbjct: 533 ECIEKIAAA 541



 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R  LR+ DN AL  AC  + A V  VF+  P   +   + A +  F+  SL  +  
Sbjct: 7   ILWFRKGLRVHDNPALVKACEGASA-VQPVFVLDPWFIKPERVGANRLRFLLESLTDLDA 65

Query: 71  SLSQKG---IVFQYHQCSNFDDSIE-W-LDSYCLQQRVTKLFYNRQYEINEVRR 119
           SL  +G   +V           ++E W  D  C +         R   +NE  R
Sbjct: 66  SLRARGSSLLVLHGDPARVIPAALEAWRCDRLCYEFDTEPYAQKRDASVNEAAR 119


>gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio]
 gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio]
          Length = 558

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 156/316 (49%), Gaps = 47/316 (14%)

Query: 188 VTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIP- 237
           VTP ++ R +  P  A        + ++P GE +AL  L K  + +  V  + + R IP 
Sbjct: 180 VTPVDVDRVYAVPSLAHLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPRTIPN 239

Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRH 293
             +  T+ LSPYLS+G LS R  ++RL      +  + K+ +    S   +++WREF+  
Sbjct: 240 SLLPSTTGLSPYLSLGCLSVRTFYHRLN----CIYAQSKNHSLPPVSLQGQVLWREFFYT 295

Query: 294 LMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           + +  P        S+C+         +I+W  D   L+ W+   TGFP IDA M QL  
Sbjct: 296 VASATPNFTKMEGNSICL---------QIDWYHDPERLEKWRTAQTGFPWIDAIMTQLLQ 346

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W +++      
Sbjct: 347 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFH-K 405

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NY 456
           Y RIF P   G+R DPQG ++R +LP L N P+QYI+ P  W    D+ L        +Y
Sbjct: 406 YTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEP--WKAPEDVQLSAGCIIGKDY 463

Query: 457 PLPIVDHKKACHHTLN 472
           P PIV H +A    L 
Sbjct: 464 PRPIVSHIEASQRNLE 479


>gi|326501158|dbj|BAJ98810.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 583

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 176/357 (49%), Gaps = 28/357 (7%)

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT- 189
           ++ +SF+  +L  P  + +   Q + ++ PF    +          LP   I  +G ++ 
Sbjct: 7   IVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRIN-SGDLSM 65

Query: 190 -PSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PS+   F D   +  + +       G QNA   L  F    +  Y   R       TS 
Sbjct: 66  CPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSANTSL 125

Query: 245 LSPYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHLM 295
           LSPYL  G LS R+ ++  R+K+     L+    G  +       +L  +  RE+ R+L 
Sbjct: 126 LSPYLHFGELSVRKVFHLVRMKQ-----LVWSNEGNHAAEESCTLFLRSVGLREYSRYLC 180

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R+
Sbjct: 181 FNHP-CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRV 239

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  DS     I NP ++G
Sbjct: 240 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEG 299

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
            +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV+   A
Sbjct: 300 YKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTA 356


>gi|225011847|ref|ZP_03702285.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A]
 gi|225004350|gb|EEG42322.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A]
          Length = 433

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 197/442 (44%), Gaps = 34/442 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61
           M   LVWLRNDLR  D  + + AC   + +V+A F   P+      W        ++HF+
Sbjct: 1   MKTALVWLRNDLRFEDQNSFFTACQEHE-RVVAYFSFEPKDYDKTMWGFTKTGKFRTHFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +Q  L  K I       S       WLD    Q + T LF+  ++   E     
Sbjct: 60  LETLRSLQTELENKNISLIVENRSAATGIPFWLD----QLKATALFFQEEWTFEEKMISD 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVP 180
            +  ++ + +   S  D  L  P  +      + KV+T FRK   +    +++R     P
Sbjct: 116 AVVNQISNDINVYSHYDQFLYHPEDVSMEIQSIPKVFTEFRKKCEK---FSNIRPCFSAP 172

Query: 181 AIRLTGPV---TPSNIPRFFDYPFQAI----DPMFPIGE---QNALHILRKFCKEK-VYY 229
            +     +   TP+ +P   D+ F       +  FP          H+   F   K + Y
Sbjct: 173 KVLNKSSLLSETPA-MPVLEDFEFTPFTHHANSAFPFKGGMVSGNDHLQNYFWNTKRLSY 231

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQC-WNRLKEEFVDLLIKPKSGAFSWLNELIW 287
           Y + R+ +  +  +S+ SP+L+ G LS R   W  ++ E     +K     +  + EL+W
Sbjct: 232 YKQTRNGLVGVGYSSKFSPWLANGSLSARVIYWEVMRYE---KEVKKNESTYWLIFELLW 288

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R++++++   + +       I   ++  WN        W +G T  P ++A M +L   G
Sbjct: 289 RDYFKYISLKHGNSIFHLGGIL-KKEYTWNSKQEDFLKWVEGETAEPFVNANMIELKKTG 347

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NR R   AS+  K++++DWR+G  YF  QL+D D+ SN G W + A  GND  P  R
Sbjct: 348 FMSNRGRQNVASYFAKNMMMDWRMGAAYFERQLVDYDVHSNWGNWMYVAGVGND--PRDR 405

Query: 408 IFNPTIQGKRFDPQGTFIRHWL 429
            FN  +Q +R+D  G +   WL
Sbjct: 406 KFNIKLQAERYDSNGKYQNLWL 427


>gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
 gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
 gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
 gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana]
 gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana]
 gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana]
          Length = 537

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 149/518 (28%), Positives = 230/518 (44%), Gaps = 65/518 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  L+W R  LR+ DN AL  A   S+  +  VF+  P             H++ +    
Sbjct: 5   SGSLIWFRKGLRVHDNPALEYASKGSEF-MYPVFVIDP-------------HYMESDPSA 50

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSY--------------CLQQ-RVTKLFYN 109
                S+ G   I F      + D S++ L S               CLQ+ +V +L + 
Sbjct: 51  FSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFE 110

Query: 110 RQ----YEINEVR-RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164
                 Y+  +V+ +D      ++   +      ++  P   I  +  +    Y  F K 
Sbjct: 111 YDTDPYYQALDVKVKDYASSTGVE---VFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKV 167

Query: 165 LIQ-NLVQADL--RSLPVPAIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALH 217
             + +  +++L      +P I   G +  S +P   +  +    QA    F  GE  AL 
Sbjct: 168 AGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALK 227

Query: 218 ILRKFCKEK--VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
            L K   +K  V  + + +  P+      T+ +SPYL  G LS R  +  L+  + D+  
Sbjct: 228 RLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK- 286

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
           K  S   S L +L+WREF+ +  AF              ++I WN+D  +L AW+ G TG
Sbjct: 287 KHTSPPVSLLGQLLWREFF-YTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTG 345

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           +P IDA M QL   GWMH+  R   A FL + DL + W  G + F   L+D D A NNG 
Sbjct: 346 YPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGN 405

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWL 447
           W W  S  +    + RI++P   GK++DP G +IRH+LP L ++P QYI+    AP S  
Sbjct: 406 WMW-LSCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQ 464

Query: 448 DKND--LSLNYPLPIVDH---KKACHHTLNQYYAAKKQ 480
            K +  +  +YP P+V H    K C   + + YA  K+
Sbjct: 465 TKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNKK 502


>gi|18400841|ref|NP_566520.1| UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase [Arabidopsis
           thaliana]
 gi|306756349|sp|O48652|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair
           defective 3
 gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
          Length = 556

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 149/525 (28%), Positives = 232/525 (44%), Gaps = 65/525 (12%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + +    S  L+W R  LR+ DN AL  A   S+  +  VF+  P             H+
Sbjct: 17  ITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEF-MYPVFVIDP-------------HY 62

Query: 61  IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSY--------------CLQQ-R 102
           + +         S+ G   I F      + D S++ L S               CLQ+ +
Sbjct: 63  MESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWK 122

Query: 103 VTKLFYNRQ----YEINEVR-RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
           V +L +       Y+  +V+ +D      ++   +      ++  P   I  +  +    
Sbjct: 123 VKRLCFEYDTDPYYQALDVKVKDYASSTGVE---VFSPVSHTLFNPAHIIEKNGGKPPLS 179

Query: 158 YTPFRKALIQ-NLVQADL--RSLPVPAIRLTGPVTPSNIPRFFDYPF----QAIDPMFPI 210
           Y  F K   + +  +++L      +P I   G +  S +P   +  +    QA    F  
Sbjct: 180 YQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRG 239

Query: 211 GEQNALHILRKFCKEK--VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKE 265
           GE  AL  L K   +K  V  + + +  P+      T+ +SPYL  G LS R  +  L+ 
Sbjct: 240 GESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQN 299

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
            + D+  K  S   S L +L+WREF+ +  AF              ++I WN+D  +L A
Sbjct: 300 IYKDVK-KHTSPPVSLLGQLLWREFF-YTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAA 357

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384
           W+ G TG+P IDA M QL   GWMH+  R   A FL + DL + W  G + F   L+D D
Sbjct: 358 WRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSD 417

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH--- 441
            A NNG W W  S  +    + RI++P   GK++DP G +IRH+LP L ++P QYI+   
Sbjct: 418 WAINNGNWMW-LSCSSFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPW 476

Query: 442 -APHSWLDKND--LSLNYPLPIVDH---KKACHHTLNQYYAAKKQ 480
            AP S   K +  +  +YP P+V H    K C   + + YA  K+
Sbjct: 477 TAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNKK 521


>gi|254462785|ref|ZP_05076201.1| deoxyribodipyrimidine photolyase family protein [Rhodobacterales
           bacterium HTCC2083]
 gi|206679374|gb|EDZ43861.1| deoxyribodipyrimidine photolyase family protein [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 511

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 132/494 (26%), Positives = 215/494 (43%), Gaps = 53/494 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLR  D+  L AA   S++ VI ++I  PE W+Q   S R  HFI+  L+ +  
Sbjct: 7   IVWFKRDLRNHDHAPLLAAS-QSNSPVIPLYIVEPEYWQQAFASRRHWHFIHDCLVDLNI 65

Query: 71  SLSQKG---IVFQYHQC---SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +L+  G   IV     C   +   +     D Y  ++      Y+R  ++ ++  D+ + 
Sbjct: 66  ALTDLGQPLIVRVGDVCDVLAQLHEQHGVGDVYMHEETGNSWTYDRDLKVGKLCLDRNIS 125

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                         S   P   ++   L+    ++  R   +   + A   +L VP +  
Sbjct: 126 --------------SHEFPTNGVVRR-LRSRDDWSKIRNVRMAENITAKPNNL-VPTLGC 169

Query: 185 TGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242
                P  + P F + P   +      G   A+  L+ F   +   Y+     P++    
Sbjct: 170 QSDSLPEKDDPMFGNTPIGKVQKG---GRTQAVADLQSFLNHRCQKYLHHISAPSLSDVH 226

Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKS-----GAFSWLNELIWREFYRHLM 295
            S+LS +L+ G LS R+  + + +    L  ++ KS      AF   + L WR  +   +
Sbjct: 227 CSRLSTHLAWGALSVREVVHSVAKRHAQLTPLEKKSYGRNLSAFG--SRLAWRCHFVQKI 284

Query: 296 AFYPSV---CMGKPFIPWTEKI-EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
              P +   CM   F    E + E+  +    QAW  G TG+P +DA MR L   GW+  
Sbjct: 285 EDQPEIETHCMHPAF----EGLREYEHNEAHYQAWATGNTGYPFVDACMRSLIAEGWITF 340

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R +  SF    L +DWR+  ++      D +   +    Q    +G   +   R++NP
Sbjct: 341 RMRAMLVSFASYQLWLDWRVSGDHLARLFTDFEPGIHYS--QLQMQSGVTGINTMRVYNP 398

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIVDHKK 465
             Q    DP G FIR W+PEL NVP ++IH P +W    LD+ D  L  +YP PIV+H  
Sbjct: 399 IKQSLEHDPTGAFIRKWVPELTNVPDEFIHEPWTWEKTLLDQRDFELGQDYPAPIVEHSF 458

Query: 466 ACHHTLNQYYAAKK 479
           A +    +  A +K
Sbjct: 459 AANAAKQKIAAVRK 472


>gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas]
          Length = 536

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/290 (36%), Positives = 150/290 (51%), Gaps = 30/290 (10%)

Query: 208 FPIGEQNALHILRKFCKEK--VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNR 262
           F  GE  AL  LR+  K+K  +  + + +  P+      T+ LSPYL  G LS R  +  
Sbjct: 218 FRGGESEALKSLRESIKDKEWIANFEKPKGDPSAFVKPATTVLSPYLKFGCLSSRYFFQC 277

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW------TEKIEW 316
           L++ + ++  K  S   S + +L+WR+F      FY +V  G P           ++I W
Sbjct: 278 LQDVYRNVK-KHTSPPVSLVGQLLWRDF------FY-TVAFGTPNFDQMKDNRICKQIPW 329

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEY 375
           N+D+ LL AW+   TG+P IDA M QL   GWMH+  R   A FL + DL V W  G + 
Sbjct: 330 NEDTELLAAWRDARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDV 389

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           F   L+D D A NNG W W  S  +    Y RI++P   GK++DP G +IRH+LP L ++
Sbjct: 390 FERLLIDSDWAINNGNWLW-LSCSSFFYQYNRIYSPISFGKKYDPNGNYIRHFLPVLKDM 448

Query: 436 PTQYIH----APHSWLDKND--LSLNYPLPIVDH---KKACHHTLNQYYA 476
           P ++I+    AP S   K    +  +YP P+V H    K C   L + YA
Sbjct: 449 PKEFIYEPWTAPLSVQTKAKCIIGRDYPKPVVSHDSASKECKRKLAEAYA 498


>gi|148905938|gb|ABR16130.1| unknown [Picea sitchensis]
          Length = 431

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/258 (37%), Positives = 131/258 (50%), Gaps = 29/258 (11%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            T+ LSPYL  G LS R  + RL+E +  +  K      S   +L+WREF      FY +
Sbjct: 143 ATTVLSPYLKFGCLSSRLFYQRLQEVYRKVK-KHTEPPVSLEGQLLWREF------FY-T 194

Query: 301 VCMGKPFI------PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           V  G P        P  ++I WN D  LL AW+ G TG+P IDA M QL   GWMH+  R
Sbjct: 195 VAYGTPKFDQMEGNPICKQIPWNDDDSLLSAWRDGQTGYPWIDAVMVQLRKWGWMHHLAR 254

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL V W  G + F   L+D D A NN  W W + +   S  Y RI++P  
Sbjct: 255 HAVACFLTRGDLFVHWEKGRDVFDRLLIDSDWAINNSNWMWLSCSAFFSQ-YHRIYSPIS 313

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDH-- 463
            GK++DP G ++R++LP L ++P +YI+ P  W    D        +  +YP P+V H  
Sbjct: 314 FGKKYDPDGKYVRYFLPVLKDMPKEYIYEP--WTAPIDVQRKAKCIIGKDYPEPLVSHLG 371

Query: 464 -KKACHHTLNQYYAAKKQ 480
             K C   +   YA  KQ
Sbjct: 372 ASKNCKEKIAAAYALNKQ 389


>gi|21218740|ref|NP_624519.1| deoxiribopirymidine photolyase [Streptomyces coelicolor A3(2)]
 gi|5748645|emb|CAB53150.1| deoxiribopirymidine photolyase [Streptomyces coelicolor A3(2)]
          Length = 415

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 89/132 (67%), Gaps = 1/132 (0%)

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG+P++DAAMRQL   GWMHNR R++ ASFL K L VDWRIG  +F+  L+DGD+ +N  
Sbjct: 270 TGYPVVDAAMRQLRHQGWMHNRARLLVASFLTKTLYVDWRIGARHFLDLLVDGDVVNNQL 329

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
            WQWAA TG D+ P+ R+ NP +Q +RFDP G ++R W+PEL +V    +H P       
Sbjct: 330 NWQWAAGTGTDTRPH-RVLNPLVQARRFDPDGVYVRRWVPELRSVEGGKVHEPWRLAAAE 388

Query: 451 DLSLNYPLPIVD 462
              L+YP P+V+
Sbjct: 389 RGELDYPDPLVE 400


>gi|89890451|ref|ZP_01201961.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
 gi|89517366|gb|EAS20023.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
          Length = 442

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 214/463 (46%), Gaps = 67/463 (14%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH------------GISAR- 56
           +LVW RNDLR+TDN +L  AC N D KVI ++   P  ++              G + + 
Sbjct: 3   NLVWFRNDLRVTDNHSLKKACDN-DGKVIGIYCFDPIFYQNSNFGLDIDLELPFGKTGKF 61

Query: 57  QSHFIYASLLQVQKSLSQKGI-VFQYHQ--CSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           ++ FI  ++  ++K L + GI +  YH    + F D I+  D       +T ++  +++ 
Sbjct: 62  RAQFIIEAIEDLRKQLDKHGIPLLVYHDSPVNVFPDIIKEYD-------ITNIYLQKEWT 114

Query: 114 INEVRRDKLLEKRLQHRVIC----KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---- 165
            +EV ++ LL   L+   +     +++D  +  P     ++  ++  V+T FRK      
Sbjct: 115 RDEVEQENLLGTALKLLEVKPKGHRTYDQFLYHPHDVPYSNFQEIPTVFTQFRKKCEKES 174

Query: 166 -IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFP--IGEQNALHI 218
            I+ LV        +P+      V  + IP+  D   ++ +      FP   G   A   
Sbjct: 175 HIRTLVDIKDYQQELPS------VVSTTIPQLEDLGLESFEKDHRSAFPWKGGAIAAWER 228

Query: 219 LRKFCKE--KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLI 272
           L  +  +  K+ YY + R+ +  I  +S+LS +L+IG +S R+ +    R ++E     +
Sbjct: 229 LNHYFWDTGKLQYYKKTRNGLVGIDYSSKLSTWLAIGCISAREIYWEVQRFEKE-----V 283

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT----EKIEWNKDSHLLQAWKQ 328
           K     +  + ELIWR+F++     Y S+  G           ++ EW      L  W  
Sbjct: 284 KKNQDTYWLIFELIWRDFFK-----YVSLKNGNDIFKLGGILHKEYEWKSSERELSKWIN 338

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G T    ++A M++L   GWM NR R   AS+       DWRIG  YF   L+D D+ SN
Sbjct: 339 GETHERFVNANMKELAATGWMSNRGRQNVASYWSMHKEQDWRIGAAYFEHILIDYDVHSN 398

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
            G W + +  GND  P  R FN  +Q  R+D  GT+ R WL E
Sbjct: 399 YGNWMYNSGVGND--PRNRTFNIELQASRYDSDGTYQRMWLQE 439


>gi|29467477|dbj|BAC67177.1| cryptochrome 2 [Armoracia rusticana]
          Length = 617

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 141/492 (28%), Positives = 217/492 (44%), Gaps = 58/492 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA H  +  V  VFI  PE+  Q         ++  SL  + +
Sbjct: 8   IVWFRRDLRIEDNPALAAAAH--EGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128
           SL   G      +  N   +I  LD  C++    TK+ +N  Y+ ++ VR   + EK ++
Sbjct: 66  SLKALGSELTLIKTHNTVSAI--LD--CIRITGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP---VPAIRLT 185
             +  +SF+  +L  P  I     + +  ++ + K  +   +++ +   P   +P     
Sbjct: 122 LGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLMPISTAA 181

Query: 186 GPVTPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             V   +I         + P  A+    +  G  NA  IL +F ++++  Y +       
Sbjct: 182 EAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPR---QC-------WNRLK----EEFVDLLIKPKS-----GAFS 280
             TS LSPYL  G +S R   QC       W R K    +E  DL +K        G + 
Sbjct: 242 NSTSLLSPYLHYGEISVRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLREYLGIYV 301

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            ++ L+       +  F   +     F     + +W            GY          
Sbjct: 302 SISRLLTSNLCGVIFVFSLGMADVDKFQGLETRQDWLSVGGCRNERALGY---------- 351

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
                 G MHNRLR+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  
Sbjct: 352 ------GCMHNRLRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLP 405

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSL 454
           D     R+ NP IQG ++DP+G +IR WLPEL  +PT++IH    AP + L  +  +L  
Sbjct: 406 DGHELDRLDNPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGT 465

Query: 455 NYPLPIVDHKKA 466
           NY  PI+D   A
Sbjct: 466 NYAKPILDIDTA 477


>gi|326433957|gb|EGD79527.1| cryptochrome DASH [Salpingoeca sp. ATCC 50818]
          Length = 552

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 142/504 (28%), Positives = 224/504 (44%), Gaps = 69/504 (13%)

Query: 3   ATTAMSVHLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----- 56
           ++ A+   +VW R +DLRI D++ L  A   S   V+ V+   P   RQ G +A+     
Sbjct: 5   SSKAVRPAVVWFRGSDLRIHDHEPLLEAAKASKGHVVPVYCFDP---RQVGPAAKTRCGQ 61

Query: 57  -------QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN 109
                  ++ FI   +  ++++L + G     +      +  E +         T++F  
Sbjct: 62  FPKCGWQRTRFIVECVEDLRRNLQRLG----SNLVVRVGEPEEVIPDIVSITGATEVFGQ 117

Query: 110 RQYEINEVRRDKLLEKRLQ--------HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161
           ++    E   +  L KRL            +C   D    LP          +  V++ F
Sbjct: 118 KEVCSEETGVEHRLAKRLSVPLTLRWGAITLCHRDD----LP---YERSCSDLPGVFSQF 170

Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVT--PSNIPRFFDYPFQAIDPMFPI--GEQNALH 217
           RKA    +     R  P     L  P+   P ++P     P   + P  P    E+  L 
Sbjct: 171 RKAAEACVPIRPPRPPPPSLQPLPQPIAGDPGHVP-----PVTQLSPNAPAKADERGVLT 225

Query: 218 IL--RKFCKEKVYYYVEQRDIPAIQG-----------TSQLSPYLSIGVLSPRQCWNRLK 264
            +      + +V +Y+   D  A              +S+ SP+L+ G +S R   + +K
Sbjct: 226 FVGGETVARTRVKHYLWDTDCIATYKDTRNGLVGADYSSKFSPWLAHGCVSARWIHSEVK 285

Query: 265 EEFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
               + +   K+ +  WL  EL+WR+++R  +A      + K      + I W      L
Sbjct: 286 RYERERV---KNNSTYWLVFELLWRDYFR-FVALQHGTAIFKEGGVQRKGIAWRHSPLDL 341

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            AW++G TGFP +DA MR+L   G+M NR R   ASFL KDLL+DWR+G E+F S L+D 
Sbjct: 342 SAWQEGRTGFPFVDANMRELAATGFMSNRGRQNVASFLTKDLLIDWRLGAEWFESLLIDH 401

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-- 441
           D  +N G W +AA  GND     R FN   Q K +DP   ++  W+PEL ++P  + H  
Sbjct: 402 DPCANYGNWNYAAGIGNDPR-QGRHFNVIRQAKTYDPAAEYVHLWVPELKHLPAPFAHTP 460

Query: 442 --APHSWLDKNDLSL--NYPLPIV 461
             APH  L+   ++L  +YP PIV
Sbjct: 461 YQAPHGELEAAGVALEKSYPRPIV 484


>gi|332520700|ref|ZP_08397162.1| cryptochrome, DASH family [Lacinutrix algicola 5H-3-7-4]
 gi|332044053|gb|EGI80248.1| cryptochrome, DASH family [Lacinutrix algicola 5H-3-7-4]
          Length = 437

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 203/440 (46%), Gaps = 38/440 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHFIYASL 65
           LVW +NDLRI DN  L  A + S+  VIA++         +++        ++ F+  ++
Sbjct: 10  LVWFKNDLRINDNATLLNAVNESET-VIAIYCFDNRYFKKDKFGFKKTEKFRARFLIETI 68

Query: 66  LQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
             ++  L    I +F Y  C   ++SIE L +         L+  +++   E     L++
Sbjct: 69  TDLKFQLQALNIPLFVY--CDYTENSIENLQN---THGFDALYLQKEWTTEENNILDLVK 123

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           K+L   V      +  L  P  +  +   +  V+T FRK L +N++   L     PA   
Sbjct: 124 KKLNPNVKIHEEYNQFLFHPEDLNFNIESLPSVFTEFRKNLEKNILVRTLLPTANPANSS 183

Query: 185 TGPVTPSNIPRFFDYPFQAI----DPMFPI--GEQNALHILRK--FCKEKVYYYVEQRD- 235
                 + +P   D  F          FP   GE  A   L    F ++K+ +Y + R+ 
Sbjct: 184 YTFKNETRVPTLKDLGFSDFKIHNQSAFPFKGGETEAFKRLENYFFQEKKLGFYKKTRNG 243

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+LS +L+ G +S +  + ++KE F  L  K +S  +  + ELIWR++++++ 
Sbjct: 244 LIGTDYSSKLSAWLANGSISAKTIYWKVKE-FETLHFKNQS-TYWLIFELIWRDYFKYVS 301

Query: 296 A------FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
                  F     + K +       +W  +   +  W    T  P I+A M +LN  GWM
Sbjct: 302 KKNNNKIFKIGGILDKTY-------QWKDNKDAVNKWINSETNEPFINANMNELNKTGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            NR R   AS+  K+LL+DWRIG  YF S L+D D+ SN G W + +  GND  P  R F
Sbjct: 355 SNRGRQNVASYFAKELLLDWRIGAAYFESLLIDYDVHSNYGNWMYVSGVGND--PRNRKF 412

Query: 410 NPTIQGKRFDPQGTFIRHWL 429
           N  +Q +R+D  G +   WL
Sbjct: 413 NIKLQAERYDANGKYQSMWL 432


>gi|195389935|ref|XP_002053627.1| GJ24000 [Drosophila virilis]
 gi|194151713|gb|EDW67147.1| GJ24000 [Drosophila virilis]
          Length = 539

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 133/505 (26%), Positives = 228/505 (45%), Gaps = 62/505 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65
             +++W R+ LR+ DN AL AA  + D  +  I +FI   E      +   +  F+  SL
Sbjct: 5   GANVIWFRHGLRLHDNPALLAALSDKDQGIALIPIFIFDGESAGTKSVGYNRMRFLLDSL 64

Query: 66  ----LQVQKSLSQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEV 117
               +Q+QK+   +G  ++ Q      F    E   L   C++Q    ++  R      +
Sbjct: 65  QDIDMQLQKATEGRGGLLMCQGQPTQIFRRLHERVRLHKICVEQDCEPIWNERDEATKSL 124

Query: 118 RRDKLLE--KRLQHRVICKSFD-DSVLLPPGSILNHALQMYK-----VYTPFRKALIQNL 169
            R+  +E  +++ H +    +D  +V+   G I     QM+      +  P R     N 
Sbjct: 125 CRELNIEYVEKVSHTL----WDPRTVIDTNGGIAPLTYQMFLHTVQIIGLPPRPIPDPNF 180

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKE 225
               +  LP    +  G +  +  P  F+     +  +  +    GE  AL +L +  K 
Sbjct: 181 EGVSIAQLPQELRKDIGCLEKTPTPEDFNIYSDNMGYLAKMNWIGGETQALSLLGERLKV 240

Query: 226 KVY-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----- 274
           + +     YY+  + +P I  T + +S +L  G LS R+ +  + + F ++ ++      
Sbjct: 241 EQHAFERGYYLPNQALPNILETPKSMSAHLRFGCLSVRRFYWSMHDLFKNVQMRACVRGV 300

Query: 275 -KSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQA 325
             +G      +LIWRE++  +    P         +C+    IPW++      D+  LQ 
Sbjct: 301 QMTGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLS---IPWSKP-----DADQLQR 352

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384
           W+ G TGFP+ID+AMRQL   GW+H+ LR   A+FL +  L  +W +G E+F+  LLD D
Sbjct: 353 WRLGQTGFPLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWELGLEHFLKYLLDAD 412

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
            +   G W W +S+  + +    +   P    KR DP G +I+ ++PEL NVP ++IH P
Sbjct: 413 WSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPNGAYIKQYVPELKNVPKEFIHEP 472

Query: 444 HSWLDKND------LSLNYPLPIVD 462
                +        L  +YP  I+D
Sbjct: 473 WRMSSEQQERYECLLGFHYPQRIID 497


>gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis]
 gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis]
          Length = 541

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 149/523 (28%), Positives = 220/523 (42%), Gaps = 68/523 (13%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPE--QWRQHGI 53
           M A     VH  W R  LR+ DN AL    +++ A      V  +FI  P    W Q G 
Sbjct: 1   MSAKRRTLVH--WFRKGLRVHDNPALSQIFNDARASPEKFYVRPIFILDPGILDWMQVG- 57

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A +  F+  SL+ + K L +        +    D   E  + + +Q     L +    E
Sbjct: 58  -ANRWRFLQQSLVDLDKKLKELNSRLYIVRGKPVDVFPELFERWNVQL----LTFESDIE 112

Query: 114 INEVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              ++RD  ++K   +H V   +     +  P  ++  A  + K    ++K L       
Sbjct: 113 PYALQRDTTVQKIASEHGVKVDTHCSHTIYNPELVI--AKNLGKAPVTYQKFL------G 164

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---------------------FPIG 211
            +  L +P +       P  I    D  F+A+D                       FP G
Sbjct: 165 IVDKLKLPKVLAVPEGLPDGIKPIAD-EFEAVDSCVYDCPTLDQLVKRPQELGVNKFPGG 223

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEF 267
           E  AL  +     ++ +    ++   A       T+ LSPYL  G LS R    RLKE  
Sbjct: 224 ETEALRRMEASLIDENWVAAFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLLHERLKEIL 283

Query: 268 VDLLIKPKSGA--FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLL 323
           V    KPK      S + +L+WREFY  + A  P+    +G  +     +I W K    L
Sbjct: 284 VR---KPKHSKPPVSLVGQLLWREFYYTVAAADPNFDRMLGNAY---CLQIPWQKQPDHL 337

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382
           +AW  G TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD
Sbjct: 338 EAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEDGQRVFEQLLLD 397

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D A N G W W +++      YFR+++P   GK+ DP G +IR ++PEL   P   I+ 
Sbjct: 398 QDWALNAGNWMWLSASAFFH-QYFRVYSPVAFGKKTDPTGAYIRKYVPELAKYPAGCIYE 456

Query: 443 P-HSWLDKND-----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P  + L         L ++YP  IV+H       + +  AA K
Sbjct: 457 PWKATLSAQREYGCVLGVDYPHRIVNHDIVHKENIKRMSAAYK 499


>gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome 4 [Taeniopygia guttata]
          Length = 527

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 142/492 (28%), Positives = 219/492 (44%), Gaps = 45/492 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++HL   R +LR+ DN  L AA  +S+A      +          I A + +F+  SL  
Sbjct: 5   TIHL--FRKELRLHDNPVLLAALESSEALYPVYILDRAFLTSSMHIGALRWNFLLQSLED 62

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           + K+L Q G   +V Q        D I+ W  +        + FY ++ E N  R    L
Sbjct: 63  LHKNLGQLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEMEPFY-KEMEANIQRLGAEL 121

Query: 124 EKRLQHRVICKSFDDSVLL------PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
              +   V    ++   +L      PP +       +  +  P  +  ++NL   D +  
Sbjct: 122 GFEVLSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDP--ELPVRNLTAEDFQRC 179

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQ 233
             P     G      +P   D     +++ P +  GE   L  L +   ++  V  + + 
Sbjct: 180 RAPE---PGLAECYRVPLPVDLKISPESLSP-WRGGETEGLRRLEQHLIDQGWVTSFAKP 235

Query: 234 RDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWR 288
           R  P   +  T+ LSPY S+G LS R  + RL     ++  + K  +    S   +L+WR
Sbjct: 236 RTSPNSLLPSTTGLSPYFSMGCLSVRTFFYRLS----NIYAQAKHHSLPPVSLQGQLLWR 291

Query: 289 EFYRHLMAFYPSVCM--GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           EF+  + +  P+     G P      +I W KD+  L  WK   TGFP IDA M QL   
Sbjct: 292 EFFYTVASATPNFTQMAGNPI---CLQISWYKDAERLHKWKTAKTGFPWIDAIMTQLRQE 348

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W +++      Y
Sbjct: 349 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFH-QY 407

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459
            RIF P   GKR DPQG +IR +LP L N P++YI+ P +  ++        +  +YP P
Sbjct: 408 TRIFCPVRFGKRTDPQGNYIRKYLPILKNFPSKYIYEPWTASEEEQKLAGCIIGQDYPFP 467

Query: 460 IVDHKKACHHTL 471
           +V+HK+A  H L
Sbjct: 468 MVNHKEASDHNL 479


>gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex]
          Length = 524

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 152/517 (29%), Positives = 222/517 (42%), Gaps = 88/517 (17%)

Query: 13  WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W R  LR+ DN AL  A      S  ++  VFI  P   +   +   +  F+  SL  + 
Sbjct: 10  WFRKGLRLHDNPALLNALEKVGESHYELRPVFILDPWFVKNAKVGPNRWRFLVQSLQDLD 69

Query: 70  KSLSQKG---IVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +L + G    + +      F     EW         V KL +    E     RD+ ++K
Sbjct: 70  DNLKKIGSRLFILKGSPTETFKKVFKEW--------NVKKLTFEVDIEPYAKTRDEEIKK 121

Query: 126 RLQHRVIC-------------KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL------- 165
              H  +              K F  +    P + +     + K  TP  KAL       
Sbjct: 122 LADHHSVTVVAKVSHTIYDLEKVFKANGNKAPLTYVKFQSVVAKFGTP-EKALNAPGKLP 180

Query: 166 --IQNLVQADLRSLPVPA---IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
              Q L+ +D  ++P+     + LTG                    ++  GE  AL  + 
Sbjct: 181 KQCQTLLLSDKYNVPLLEEMQVDLTG----------------LGKELYRGGETEALARME 224

Query: 221 KFCKEK--VYYYVEQRDIP-AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
           K+  ++  V  + +    P +I+  T+ LSPYL  G LSPR  ++RL  E +D   K  S
Sbjct: 225 KYMSQQDWVCKFSKPDTSPNSIEPSTTVLSPYLKFGCLSPRLMYHRL-HEIIDGR-KHTS 282

Query: 277 GAFSWLNELIWREFYRHLMAFYPSV--CMGKPF---IPWTEKIEWNKDSHLLQAWKQGYT 331
              S   +++WREFY    A+ P+    +G P    IPW    E   D H + AWK G T
Sbjct: 283 PPTSLTGQMLWREFYYTCGAYTPNFNRMVGNPVCKQIPWKVDPE---DEHFV-AWKNGRT 338

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390
           G+P IDA M QL T GW+H+  R   A FL + DL V W +G++ F   LLD D A N G
Sbjct: 339 GYPFIDAIMIQLRTEGWIHHLARHAVACFLTRGDLWVSWELGQQVFEELLLDADWALNAG 398

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
            W W +++      YFR+++P   GK+ D  G +I+ +LP L   PT+YI+ P  W  K 
Sbjct: 399 NWMWLSASAFFH-SYFRVYSPVAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEP--W--KA 453

Query: 451 DLSL----------NYPLPIVDHKKACHHTLNQYYAA 477
            LS+          +YP  IVDH       L +   A
Sbjct: 454 PLSVQQTAGCIIGKDYPKRIVDHDVVMKENLAKMKKA 490


>gi|72160938|ref|YP_288595.1| deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
 gi|71914670|gb|AAZ54572.1| Deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
          Length = 419

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 210/442 (47%), Gaps = 41/442 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-HFIYASL 65
           MS  +V    DLR++D+ AL+AA   +D +V+ +F+  P   R   +SAR    ++  +L
Sbjct: 1   MSTTVVLFTRDLRVSDHPALHAAVTEAD-RVVPLFVVDPALVR---VSARNRIAYLLEAL 56

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +++  L ++G      Q     +++  +     Q     ++ +       VRR + L +
Sbjct: 57  AELRGLLRERGGELVVRQGDTVAETVRIVAEAGAQ----AVYLSADVSAAAVRRARQLTE 112

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--- 181
            ++      ++F    ++PPG++       Y+++TP+    +     A  RS P PA   
Sbjct: 113 AVRAAGAHVRTFPGVTVVPPGALRPAHGDHYQIFTPY----LNAWRAAQWRS-PRPAPER 167

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +RL   + P  +P   +        + P  EQ       +  +E++  ++ Q +      
Sbjct: 168 VRLPEGLVPGPLP-GAELIRLGTGVLAPQREQGGP----RTARERIRAWLAQPNQ----- 217

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S+   +L  G LSP +         V L+ +        L +L  R+F+  ++  +P +
Sbjct: 218 DSRFGCHLHFGCLSPLE---------VALVAREHPRGALLLRQLALRDFHHQVLQAFPRL 268

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                + P    I+W  D     AW  G TG PI+DA MRQL   G++  R+RM+TA++L
Sbjct: 269 PRAD-YRP--RPIQWRDDDSAFAAWCSGRTGVPIVDAGMRQLLWEGYVPGRIRMLTATYL 325

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            + L + W+ G ++F S L+DGD+A+N G WQ  A TG    P  RI N   Q +R+DP 
Sbjct: 326 TQVLRIHWKRGADHFYSLLVDGDVANNYGNWQQIAGTGGVPRPARRI-NLYRQAERYDPS 384

Query: 422 GTFIRHWLPELNNVPTQYIHAP 443
           G ++R ++PEL ++    +H P
Sbjct: 385 GDYVRRFVPELRSISGSAVHHP 406


>gi|56459233|ref|YP_154514.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
 gi|81821701|sp|Q5QXE0|CRYD_IDILO RecName: Full=Cryptochrome DASH
 gi|56178243|gb|AAV80965.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
          Length = 449

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 133/455 (29%), Positives = 210/455 (46%), Gaps = 48/455 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ--WRQHGISARQSH---FIYA 63
           + L   RNDLR+ DN ALY A   S+  +I  F   P Q  +  +GI A   H   F+  
Sbjct: 16  LGLFVFRNDLRVEDNLALYEAAQRSET-LICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQ 74

Query: 64  SLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           SL Q++  L  +G   IV        FD  +  L S   +++V  +F ++     E  + 
Sbjct: 75  SLKQLRTELEMRGQKLIVL----TGTFDRILTELIS---ERQVDAIFLSQHQGYYERLQL 127

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            LL++R       ++  ++ L     +      + + ++ FRK +    +  +    PV 
Sbjct: 128 GLLQQRFPFLPFHET-PNNTLFSEQELPFELADLPETFSQFRKKV--EPLSRNFSVQPVN 184

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNAL-HILRKFCKEKVYYYVE 232
           A+    P  P NI     YP    + +       F  GE+ AL H+   F  E    Y +
Sbjct: 185 AL----PSLPKNI----SYPGFKAETLNELASDDFEGGERAALTHLTSYFSGESAGTYKQ 236

Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ +     +++ SP+L+ G LS RQ    L+    +      S   S+  EL+WRE++
Sbjct: 237 TRNALDDFSSSTKFSPWLAQGCLSVRQIMAALRAYETEFGENESSYWISF--ELLWREYF 294

Query: 292 RHLMAFYPSVCMGKPFIPWT----EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
                F+ ++  GK    ++    +  + +  S   Q W  G T +PI++A M+QLN  G
Sbjct: 295 -----FWYALKHGKRLFAFSGLSGKSPKTSFYSERFQKWCSGNTPYPIVNACMKQLNATG 349

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NR R + AS  V +L +DWR G  YF  QL+D D++SN G WQ+ A  G D   + R
Sbjct: 350 YMSNRGRQLVASCFVHELSLDWRYGAAYFEQQLIDYDVSSNWGNWQYLAGVGADPRGH-R 408

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            FN   Q +R+DP   FI  W  +L+  P   + A
Sbjct: 409 QFNLEKQTERYDPDNEFIERWAGDLSGQPIDSVDA 443


>gi|86140426|ref|ZP_01058985.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
           MED217]
 gi|85832368|gb|EAQ50817.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
           MED217]
          Length = 432

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 213/440 (48%), Gaps = 32/440 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYAS 64
           +LVW RNDLR+ DN +L+ A  N++  + AV+   P Q+++     +++      F+  +
Sbjct: 3   NLVWFRNDLRVKDNTSLFKASKNANL-LAAVYCFDPRQFQEDQFGFKKTERFRAQFLIET 61

Query: 65  LLQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY--EINEVRRDK 121
           + ++++ L++  I +F Y++        + L     + ++ +LF+  ++  E  EV R K
Sbjct: 62  VTELREHLAELNIPIFVYNEQPE-----DILPQLIERLQIDQLFFQEEWTSEEQEVTR-K 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVP 180
           + E         +S+D  ++ P          +  V+T +RK   +NL ++ ++     P
Sbjct: 116 VKESCSASVKFTESYDQFLIHPEDLPYKSIEAIPNVFTQWRKKCEKNLNIRKEVSITEFP 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP----MFPI--GEQNALHILRKFC--KEKVYYYVE 232
                   T  +IP   D   ++  P     FP   GEQ AL+ +  +     K+  Y +
Sbjct: 176 QTNFEENST--SIPTLQDLNLESFTPDHRSAFPFKGGEQQALNRIEDYFWQTRKLAVYKK 233

Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ +     +S+LS +L+ G +S R  + ++K  F     K +S  + +  EL+WR+F+
Sbjct: 234 TRNGLTGKNYSSKLSAWLANGGISARTIYWKIKA-FEQEETKNESTYWLFF-ELMWRDFF 291

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +++   Y         I   +  +W  +    + W  G T +  ++A M+++   GWM N
Sbjct: 292 KYISLKYGDQIFKIGGIL-EKDYDWKTNKAAKKEWINGQTKYDFVNANMKEIAATGWMSN 350

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R   AS+  K+L  DWRIG  YF S L+D D+ SN G W + +  GND  P  R FN 
Sbjct: 351 RGRQNVASYWAKELQQDWRIGAAYFESMLIDYDVHSNYGNWMYNSGVGND--PRDRKFNI 408

Query: 412 TIQGKRFDPQGTFIRHWLPE 431
             Q +R+D  G F R WL E
Sbjct: 409 KSQAERYDGDGKFRRLWLQE 428


>gi|194744725|ref|XP_001954843.1| GF16541 [Drosophila ananassae]
 gi|190627880|gb|EDV43404.1| GF16541 [Drosophila ananassae]
          Length = 542

 Score =  147 bits (371), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 137/511 (26%), Positives = 229/511 (44%), Gaps = 66/511 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65
             +++W R+ LR+ DN AL AA    D  +  + VFI   E      +   +  F+  SL
Sbjct: 5   GANVIWFRHGLRLHDNPALLAALAEKDQGIALLPVFIFDGESAGTKNVGYNRMRFLLDSL 64

Query: 66  L----QVQKSLSQKGIVFQY-----HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
                Q+Q     +G +  +     H      + +  L   CL+Q    ++ +R   I  
Sbjct: 65  QDIDDQIQTLTDGRGRLLLFEGKPEHIFRRLHEQLR-LHKICLEQDCEPIWNHRDETIRS 123

Query: 117 VRRDKLLE--KRLQHRVICKSFDDSVLLPPGSILNHALQMYK-----VYTPFRKALIQNL 169
           +  +  +E  +++ H +       SV+   G I     QM+      +  P R      L
Sbjct: 124 LCHELGIEFVEKVSHTLWNPQ---SVIETNGGIPPLTYQMFLHTVQILGLPPRPVNDARL 180

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKE 225
             A    +    +R  G +     P  F+     +  +  I    GE+ AL +L +  K 
Sbjct: 181 EDASFVQMDPELLRNLGYLEQIPTPEHFNVYGDNMGFLSKIRWRGGERQALLLLDERLKV 240

Query: 226 KVY-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----- 274
           + +     YY+  + +P IQ T + +SP+L  G LS R+ +  + + F ++ ++      
Sbjct: 241 EQHAFEKGYYMPNQALPNIQETPKSMSPHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGV 300

Query: 275 -KSGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQA 325
             +G      +LIWRE++  +    P+        +C+    IPW ++     D   LQ 
Sbjct: 301 QMTGGAHITGQLIWREYFYTMSVNNPNYDRMDGNEICLS---IPWAKR-----DETQLQK 352

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384
           W+ G TGFP+IDAAMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D
Sbjct: 353 WRLGQTGFPLIDAAMRQLLAEGWLHHVLRNTVATFLTRGGLWQSWEHGVQHFLRYLLDAD 412

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
            +   G W W +S+  + +    +   P    KR DP G +IR ++PEL NVP ++IH P
Sbjct: 413 WSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGAYIRQYVPELKNVPREFIHEP 472

Query: 444 HSW---LDKND-----LSLNYPLPIVDHKKA 466
             W   L + +     + ++YP  ++D  KA
Sbjct: 473 --WRMNLQQQEQYECLIGVHYPDRLIDLSKA 501


>gi|219117169|ref|XP_002179379.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409270|gb|EEC49202.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 585

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 214/455 (47%), Gaps = 46/455 (10%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
           +D+RI DN+AL  ACH++    + ++      W   G        +  +L Q+   LSQ+
Sbjct: 33  HDIRIHDNEALLLACHHNHVLPVFLWQVPVHHW---GARGALQVVLKEALHQLSLQLSQE 89

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY--EINEVRRDKLLE-KRLQ-HRV 131
            I      C N  DS+  L     +   + +++NR+   E  E+ R +    K+L    V
Sbjct: 90  SINLPL-VCGNTADSVSELCKIASEIGASAVYWNREMTPESREMERHRATSLKQLDIAAV 148

Query: 132 ICKS---FD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            C+S   +D + + L  G    H    +    PF++A  + L + D   L   ++     
Sbjct: 149 ACQSALLYDVEKLELDEGFHGGH----WGTLMPFKRACEKQLGKPDRPILMKESLACLYS 204

Query: 188 VTP-----SNIPRFFDYPFQAIDP----------MFPIGEQNALHILRKFCKEKVYYYVE 232
           V P      ++P   +  F+ + P           FP+    A   L  F  + +  Y  
Sbjct: 205 VAPPPQDCKSVP-IEELGFETVPPSTKWDEPIRERFPMIHYLAQRRLDHFLIKGLPLYES 263

Query: 233 QRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R    ++  TSQLS YL IG++SPR+ + R++    D  + P++   ++   LIWRE  
Sbjct: 264 DRSRADMEYATSQLSVYLRIGIISPRELYWRIE----DSSLSPEAKK-TFARRLIWRELA 318

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
            + +  +P +   +      E  EW   +++     AWK+G TG+P++DA MR+L T G+
Sbjct: 319 YYQLFCFPKM-RDRSIRKHYEASEWVTGDEEKGRFNAWKRGLTGYPLVDAGMRELYTTGY 377

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           +   +RM+ ASFLV+ L VDW  G E+F   L D D A N+  WQ A  +G D   +  +
Sbjct: 378 LTQSVRMVVASFLVEYLRVDWTKGAEWFHYTLADADSAINSMMWQNAGRSGIDQWNF--V 435

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
            +P  +    DP G + R W+PEL+ +P QY+  P
Sbjct: 436 LSP--ENASQDPYGEYTRKWVPELSPLPLQYLQRP 468


>gi|300934389|ref|ZP_07149645.1| deoxyribodipyrimidine photolyase [Corynebacterium resistens DSM
           45100]
          Length = 216

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 117/229 (51%), Gaps = 30/229 (13%)

Query: 254 LSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK-----PF 307
           +SPR  W  + E      + + ++GAF    +LIWR+F  H +   P++           
Sbjct: 1   MSPRTVWATISEAAERGEIAESEAGAFR--RQLIWRDFAWHRLYHVPTLATCNVQAKFNR 58

Query: 308 IPWTEKIEWN--KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            PW     WN  +DS    AWK+G TG P++DA MR+L   G MHNR+RM+  S L K+L
Sbjct: 59  FPWG----WNEARDSAEFDAWKRGITGVPLVDAGMRELWETGSMHNRVRMVVGSLLTKNL 114

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ WR+GEE+F   L+D D A N   WQW A  G+D+ PYFRIFNP  Q + FD +  + 
Sbjct: 115 LIHWRLGEEWFWDTLVDADYACNPFNWQWVAGCGDDAAPYFRIFNPVTQAQIFDKESLYQ 174

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           + W+PE       Y                 P PIVD K++    L  Y
Sbjct: 175 QTWVPEAQTNHDGYP----------------PQPIVDLKQSRAEALAVY 207


>gi|242060916|ref|XP_002451747.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
 gi|241931578|gb|EES04723.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
          Length = 550

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 162/318 (50%), Gaps = 28/318 (8%)

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQR 234
           LPVP +   G         + D   + I P F  GE  AL  +++    KE V  + + +
Sbjct: 205 LPVPTVEELG---------YVDISEEEIPP-FRGGETEALRRMKESLQNKEWVAKFEKPK 254

Query: 235 DIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
             P+      T+ LSPYL  G LS R  ++ +++ +  +    K    S + +L+WR+F+
Sbjct: 255 GDPSAFLKPSTTVLSPYLKFGCLSSRYFYHCIQDVYKSVRNHTKP-PVSLIGQLLWRDFF 313

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             +    P+    K      ++I W+++  L  AW+ G TG+P IDA M QL   GWMH+
Sbjct: 314 YTVSYGTPNFDRMK-GNKICKQIPWSENEELFVAWRDGQTGYPWIDAIMIQLRKWGWMHH 372

Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
             R   A FL + D+ + W  G + F   L+D D A NNG W W  S  +    Y RI++
Sbjct: 373 LARHSVACFLTRGDMFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFFYQYHRIYS 431

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHK 464
           P   GK++DP G +IRH++P L ++P +YI+    AP S   K +  +  +YP P+VDH+
Sbjct: 432 PITFGKKYDPNGNYIRHFIPVLKDMPREYIYEPWTAPLSIQKKANCIIGKDYPKPVVDHE 491

Query: 465 ---KACHHTLNQYYAAKK 479
              K C   + + YA+ +
Sbjct: 492 TASKECKKRMGEAYASSR 509


>gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis]
 gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis]
          Length = 533

 Score =  147 bits (370), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 137/512 (26%), Positives = 225/512 (43%), Gaps = 62/512 (12%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T  +VH  W RN LR+ DN AL  A   S   V  +++  P+  +   I   +  FI  S
Sbjct: 6   THQTVH--WFRNGLRLHDNPALKEAFETSQT-VRPLYVLDPDVLKNGNIGVVRWRFILES 62

Query: 65  LLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           L  +    K L+ +  V +      F    +      L   V      R+ +   ++   
Sbjct: 63  LADLDNNLKKLNSRLFVVRGRPSEVFPKLFKEWKISKLTFEVDTTEPARKQDAEVLKIAN 122

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVP 180
            L   ++ RV    +D          L+  +       P      Q++V +    + P+P
Sbjct: 123 KLGVDIEQRVSHTLYD----------LDRIVNKNGGTAPLTYKKFQSIVSSLGPPAAPLP 172

Query: 181 AIR---LTGPVTPS--------NIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCKE 225
           AI    + G  TP+         +P   +     P ++ + ++P GE  AL  L  + K+
Sbjct: 173 AIDKKMVAGCNTPTTANHDKIYGVPTLEEIGQEVPEESREVLYPGGETEALERLEVYMKK 232

Query: 226 K--VYYYVEQRDIP-AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           +  V  + +    P +I+  T+ LSPY++ G LS R  + RL E +     K      S 
Sbjct: 233 EDWVCKFEKPNTAPNSIEPSTTVLSPYMTYGCLSARLFYTRLAEIYAKKK-KHSQPPVSL 291

Query: 282 LNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
             +L+WREF+       P        S+C+         ++ W+++   L AW +  TG+
Sbjct: 292 HGQLLWREFFTTAAYKTPNFNKMVGNSLCL---------QVPWDQNDEYLAAWAEARTGY 342

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           P IDA M QL   GW+H+  R   A FL + DL + W  G + F   L+D D   N G W
Sbjct: 343 PYIDAIMTQLRREGWVHHLARHSVACFLTRGDLWISWEEGLKVFERLLIDHDWNLNAGNW 402

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLD 448
            W +++      YFR+++P   GK+ DP G +IR ++P+L+  P +YI+    AP +  +
Sbjct: 403 MWLSASSFFHA-YFRVYSPVAFGKKTDPNGDYIRKYIPKLSRYPPKYIYEPWNAPLAVQE 461

Query: 449 KND--LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           K    +  +YP PIVDH K     +++   A+
Sbjct: 462 KAGCVIGRDYPCPIVDHNKVVTRNMSRMKEAR 493


>gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
           Bound To Ds Dna With A T-T (6-4) Photolesion
          Length = 543

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 140/515 (27%), Positives = 224/515 (43%), Gaps = 52/515 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53
           M +  +  VH  W R  LR+ DN AL   + A + +  +  V  +FI  P    W Q  +
Sbjct: 24  MDSQRSTLVH--WFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQ--V 79

Query: 54  SARQSHFIYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110
            A +  F+  +L  +    + L+ +  V +      F    +         RV  L +  
Sbjct: 80  GANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFK-------SWRVEMLTFET 132

Query: 111 QYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
             E   V RD  ++K  +   V  ++     +  P  ++   L    +       +++ L
Sbjct: 133 DIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQL 192

Query: 170 -------VQADLRSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
                  V   L+++P P       + +       + +    P +     FP GE  AL 
Sbjct: 193 KVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALR 252

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            + +  K++++    ++   A       T+ LSPYL  G LS R    +LKE  +    K
Sbjct: 253 RMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPK 311

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
                 S + +L+WREFY  + A  P+    +G  +     +I W +    L+AW  G T
Sbjct: 312 HSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPDHLEAWTHGRT 368

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390
           G+P IDA MRQL   GW+H+  RM  A FL + DL + W  G+  F   LLD D A N G
Sbjct: 369 GYPFIDAIMRQLRQEGWIHHLARMAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAG 428

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLD 448
            W W +++      YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P   S +D
Sbjct: 429 NWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVD 487

Query: 449 KND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +      L  +YP  IV H+      + +  AA K
Sbjct: 488 QRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 522


>gi|218190281|gb|EEC72708.1| hypothetical protein OsI_06300 [Oryza sativa Indica Group]
          Length = 551

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 108/324 (33%), Positives = 161/324 (49%), Gaps = 40/324 (12%)

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQR 234
           LPVP +   G         + D   + + P F  GE  AL  +R+    KE V  + + +
Sbjct: 208 LPVPRVEELG---------YGDISQEDLSP-FRGGETEALKRMRESLHDKEWVAKFEKPK 257

Query: 235 DIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
             P+      T+ LSPYL  G LS R  ++ +++ +     K  +   S   +L+WR+F 
Sbjct: 258 GDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDVYRSTK-KHTNPPVSLTGQLLWRDF- 315

Query: 292 RHLMAFYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
                FY +V  G P           ++I W ++  L  AW+ G TG+P IDA M QL  
Sbjct: 316 -----FY-TVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRK 369

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W  S  +    
Sbjct: 370 WGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFFYQ 428

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPL 458
           Y RI++PT  GK++DP G +IRH++P L ++P +YI+    AP S   K +  +  +YP 
Sbjct: 429 YHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPK 488

Query: 459 PIVDH---KKACHHTLNQYYAAKK 479
           P+VDH    K C   + + YA+ +
Sbjct: 489 PVVDHAIASKECKKMMGEAYASNR 512


>gi|297598791|ref|NP_001046243.2| Os02g0204400 [Oryza sativa Japonica Group]
 gi|306756329|sp|Q0E2Y1|UVR3_ORYSJ RecName: Full=(6-4)DNA photolyase
 gi|255670698|dbj|BAF08157.2| Os02g0204400 [Oryza sativa Japonica Group]
          Length = 551

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 162/326 (49%), Gaps = 34/326 (10%)

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFC--KEKVYYYVE 232
           +P +  TG      +PR  +  +  I      +F  GE  AL  +R+    KE V  + +
Sbjct: 196 LPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEK 255

Query: 233 QRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            +  P+      T+ LSPYL  G LS R  ++ +++ +     K  +   S   +L+WR+
Sbjct: 256 PKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTK-KHTNPPVSLTGQLLWRD 314

Query: 290 FYRHLMAFYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           F      FY +V  G P           ++I W ++  L  AW+ G TG+P IDA M QL
Sbjct: 315 F------FY-TVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQL 367

Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
              GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W  S  +  
Sbjct: 368 RKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFF 426

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNY 456
             Y RI++PT  GK++DP G +IRH++P L ++P +YI+    AP S   K +  +  +Y
Sbjct: 427 YQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDY 486

Query: 457 PLPIVDH---KKACHHTLNQYYAAKK 479
           P P+VDH    K C   + + YA+ +
Sbjct: 487 PKPVVDHAIASKECKKMMGEAYASNR 512


>gi|46390519|dbj|BAD16007.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
 gi|51536259|dbj|BAD38427.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
          Length = 560

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 161/325 (49%), Gaps = 32/325 (9%)

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFC--KEKVYYYVE 232
           +P +  TG      +PR  +  +  I      +F  GE  AL  +R+    KE V  + +
Sbjct: 205 LPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEK 264

Query: 233 QRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            +  P+      T+ LSPYL  G LS R  ++ +++ +     K  +   S   +L+WR+
Sbjct: 265 PKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTK-KHTNPPVSLTGQLLWRD 323

Query: 290 FYRHLMAFYPSVCMGKPF-----IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           F+  +    P+    K       IPWTE  E      L  AW+ G TG+P IDA M QL 
Sbjct: 324 FFYTVAFGTPNFDQMKGNKICKQIPWTENEE------LFPAWRDGRTGYPWIDAIMIQLR 377

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W  S  +   
Sbjct: 378 KWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFFY 436

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYP 457
            Y RI++PT  GK++DP G +IRH++P L ++P +YI+    AP S   K +  +  +YP
Sbjct: 437 QYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYP 496

Query: 458 LPIVDH---KKACHHTLNQYYAAKK 479
            P+VDH    K C   + + YA+ +
Sbjct: 497 KPVVDHAIASKECKKMMGEAYASNR 521


>gi|212721834|ref|NP_001132651.1| hypothetical protein LOC100194126 [Zea mays]
 gi|194694998|gb|ACF81583.1| unknown [Zea mays]
          Length = 428

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 107/181 (59%), Gaps = 7/181 (3%)

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE+ R+L   +PS    +P +       W  D    + W+QG TG+P++DA MR+L   G
Sbjct: 28  REYSRYLSFNHPS-SHERPLLAHLRFFPWVVDESYFKIWRQGRTGYPLVDAGMRELWATG 86

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+H+R+R++ ASF VK L + WR G +YF   LLD DL S+  GWQ+   +  D     R
Sbjct: 87  WLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDGRELDR 146

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461
           I NP  +G +FDP G ++R W+PEL  +PT++IH    AP S L    + L  NYPLPIV
Sbjct: 147 IDNPQFEGYKFDPHGEYVRRWIPELARLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIV 206

Query: 462 D 462
           +
Sbjct: 207 E 207


>gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio]
 gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio]
          Length = 519

 Score =  146 bits (369), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 140/490 (28%), Positives = 214/490 (43%), Gaps = 62/490 (12%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W R  LR+ DN AL AA  +    +  +F+  P   +   I   +  F+  +L  +  SL
Sbjct: 8   WFRKGLRLHDNPALIAALKDC-RHIYPLFLLDPWFPKNTRIGINRWRFLIEALKDLDSSL 66

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
            +        + S      E L     Q ++T+L +    E     RDK + K      +
Sbjct: 67  KKLNSRLFVVRGS----PTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMK------L 116

Query: 133 CKSFDDSVLLPPGSIL---NHALQMYKVYTPFRKALIQNLVQA---DLRSLPVPAIR-LT 185
            K +   V       L   +  +      TP     +Q++V+A     + +P P    + 
Sbjct: 117 AKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAPTNEDMR 176

Query: 186 GPVTPSN--------IPRFFDYPF--QAIDP-MFPIGEQNALHILRKFCKEK--VYYYVE 232
           G  TP +        IP   D      ++ P +FP GEQ AL  L +  +    V  + +
Sbjct: 177 GVSTPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHMERTNWVCKFEK 236

Query: 233 QRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            +  P   I  T+ LSPY+  G LS R  W RL + +            S   +L+WREF
Sbjct: 237 PKTSPNSLIPSTTVLSPYVRFGCLSARTFWWRLADVYRGKTHS--DPPVSLHGQLLWREF 294

Query: 291 YRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           +       P        S C+         +++W+ +   L AW++  TGFP ID  M Q
Sbjct: 295 FYTTAVGIPNFNKMEGNSACV---------QVDWDNNPEHLAAWREARTGFPFIDTIMTQ 345

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGN 400
           L   GW+H+  R   A FL + DL + W  G++ F   LLD D + N G WQW +AST  
Sbjct: 346 LRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQWLSASTFF 405

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSL 454
               YFR+++P   GK+ D  G +I+ +LP L   PT+YI+    AP S  ++    +  
Sbjct: 406 HQ--YFRVYSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVGK 463

Query: 455 NYPLPIVDHK 464
           +YP PIVDH+
Sbjct: 464 DYPRPIVDHE 473


>gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
           Bound To Ds Dna With A T-T (6-4) Photolesion And
           Cofactor F0
          Length = 543

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 140/515 (27%), Positives = 223/515 (43%), Gaps = 52/515 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53
           M +  +  VH  W R  LR+ DN AL   + A + +  +  V  +FI  P    W Q  +
Sbjct: 24  MDSQRSTLVH--WFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQ--V 79

Query: 54  SARQSHFIYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110
            A +  F+  +L  +    + L+ +  V +      F    +         RV  L +  
Sbjct: 80  GANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFK-------SWRVEMLTFET 132

Query: 111 QYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
             E   V RD  ++K  +   V  ++     +  P  ++   L    +       +++ L
Sbjct: 133 DIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQL 192

Query: 170 -------VQADLRSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
                  V   L+++P P       + +       + +    P +     FP GE  AL 
Sbjct: 193 KVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALR 252

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            + +  K++++    ++   A       T+ LSPYL  G LS R    +LKE  +    K
Sbjct: 253 RMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPK 311

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
                 S + +L+WREFY  + A  P+    +G  +     +I W +    L+AW  G T
Sbjct: 312 HSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPDHLEAWTHGRT 368

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390
           G+P IDA MRQL   GW+HN  R   A FL + DL + W  G+  F   LLD D A N G
Sbjct: 369 GYPFIDAIMRQLRQEGWIHNLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAG 428

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLD 448
            W W +++      YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P   S +D
Sbjct: 429 NWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVD 487

Query: 449 KND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +      L  +YP  IV H+      + +  AA K
Sbjct: 488 QRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 522


>gi|187608706|ref|NP_001120012.1| hypothetical protein LOC100144974 [Xenopus (Silurana) tropicalis]
 gi|165970470|gb|AAI58310.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
          Length = 531

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 218/508 (42%), Gaps = 64/508 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+H  W R  LR+ DN AL AA  N  A++  +FI  P   R   +S  +  F+  +L  
Sbjct: 5   SIH--WFRKGLRLHDNPALLAAM-NDCAELYPIFILDPWFPRNMKVSVNRWRFLIEALKD 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           + ++L +    +F            E       + +VT+L +    E    +RD  +EK 
Sbjct: 62  LDENLKKINSRLFVVR-----GKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKL 116

Query: 126 RLQHRV------------ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
             +H V            I +   ++   PP + +     +  +  P R   +Q   Q +
Sbjct: 117 AAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRP--VQVPTQEN 174

Query: 174 LRSL------------PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
           ++               VP +   G  +    PR           ++P GE  AL  L  
Sbjct: 175 MKDCCTLWKSSYNEKYGVPTLEELGQDSLKLGPR-----------LYPGGESEALSRLEL 223

Query: 222 FCKEKV----YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             K       +   E         T+ LSPY+  G LS R  W R+ E +     K    
Sbjct: 224 HMKRTTWVCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWRIAEIYQGK--KHSDP 281

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
             S   +L+WREF+       P+    +  I   + ++W  +   LQAW +G TG+P ID
Sbjct: 282 PVSLHGQLLWREFFYTAGVGIPNFNKMEGNIVCVQ-VDWGNNKEHLQAWSEGRTGYPFID 340

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-A 395
           A M QL T GW+H+  R   A FL + DL + W  G++ F   LLD D + N G WQW +
Sbjct: 341 AIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLS 400

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND 451
           AST      +FR+++P   GK+ D  G +I+ +LP L   P +YI+    AP S  ++  
Sbjct: 401 ASTFFHQ--FFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAG 458

Query: 452 --LSLNYPLPIVDHKKACHHTLNQYYAA 477
             +  +YP PIV+H  A    + +  AA
Sbjct: 459 CIIGKDYPKPIVEHDVASKQNIQRMKAA 486


>gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
 gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
          Length = 595

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 91/252 (36%), Positives = 132/252 (52%), Gaps = 18/252 (7%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            T+ LSPYL  G LS R    RL E +       +    S   +L+WREF+  + +  P+
Sbjct: 249 ATTVLSPYLKFGCLSARLFHARLLEVYRRHPAHSQP-PVSLRGQLLWREFFYTVGSTTPN 307

Query: 301 V--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                G P     ++I+W+ +   L AW++  TGFP IDA M QL T GWMH+  R   A
Sbjct: 308 FHRMAGNPVC---KQIDWDDNPEFLAAWREARTGFPWIDAIMTQLVTWGWMHHLARHSVA 364

Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            FL + DL V W  G E F   L+D D   N   W W +++   S  YFR+++P + GK+
Sbjct: 365 CFLTRGDLYVSWERGMEVFEEHLIDQDHYLNAANWMWLSASAFFS-QYFRVYSPVVFGKK 423

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHH 469
           +DP+G FIR +LP L ++P +YI+ P  W    +        +  +YP PIVDH  A   
Sbjct: 424 YDPEGRFIRKFLPVLKDMPAKYIYEP--WTAPLEVQRKAGCVVGRDYPAPIVDHAVASKA 481

Query: 470 TLNQYYAAKKQS 481
            + +  AA ++S
Sbjct: 482 CIARMAAAYRRS 493



 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 11 LVWLRNDLRITDNKALYAACHNSDAK-VIAVFIATPE--QWRQHGISARQSHFIYASLLQ 67
          ++W R  LR+ DN AL  AC   DAK V  VF+  P   Q   + +S  + +F+  SL  
Sbjct: 8  IIWFRKGLRLHDNPALLEAC--KDAKHVYPVFVLDPHFLQQSSYKVSVNRYNFLLESLED 65

Query: 68 VQKSLSQKG 76
          +Q+S   +G
Sbjct: 66 LQRSFQARG 74


>gi|210136298|gb|ACJ08741.1| cryptochrome [Sarcophaga bullata]
          Length = 542

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 138/512 (26%), Positives = 223/512 (43%), Gaps = 64/512 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYAS 64
           MS++++W R+ LR+ DN AL  A  + D  +  + +FI   E      +   +  F+  S
Sbjct: 1   MSLNIIWFRHGLRLHDNPALLDAISDKDEGIELLPIFIFDGESAGTQSVGYNRLKFLLDS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +   L    +           + ++   S   Q+ + KL + +  E    RRD  + 
Sbjct: 61  LEDINNQLRSVSLSLGRLYIMK-GNPVQIFRSLHEQRGIKKLCFEQDCEPIWNRRDNAV- 118

Query: 125 KRLQHR--VICKSFDDSVLLPPGSILN--------------HALQMYKVYTPFRKALIQN 168
           K L H   + C       L  P  ++N              H +Q+  +  P R     +
Sbjct: 119 KNLCHDLGITCIERISHTLWDPKKVINTNGGIPPLTYQMFLHTVQI--IGLPPRPVPDPD 176

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNAL-HILRKFC 223
                   L    I+  G    S  P  F     ++  +  +    GE  AL H+ ++  
Sbjct: 177 WHNVKFVKLSEKLIKDLGVFLESPTPEDFSVYPDSLSYLAKVKWIGGETQALLHLDQRLK 236

Query: 224 KE----KVYYYVEQRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--- 275
            E    K  YY+  +  P I +    +S +L  G LS R+ +  + + F D+  + +   
Sbjct: 237 VEESAFKCGYYLPNQAKPNILESPKSMSAHLRFGCLSVRKFYWDVHDLFKDVQQQAECLG 296

Query: 276 ---SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHL-L 323
              SG      +LIWRE++  +    P+        +C+    IPW E       +H+ L
Sbjct: 297 MLMSGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLN---IPWAET------NHIQL 347

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382
           Q W QG TGFP+IDAAMRQL   GW+H+ LR   A+FL +  L  +W  G  YF+  LLD
Sbjct: 348 QRWTQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEHGLRYFLKYLLD 407

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
            D +   G W W +S+  + +    +   P    KR DP G +I+ ++PEL NVP +YIH
Sbjct: 408 ADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLDPMGQYIKQYVPELANVPKEYIH 467

Query: 442 A----PHSWLDKND--LSLNYPLPIVDHKKAC 467
                P +  + +D  + ++YP  ++D   AC
Sbjct: 468 EPWRMPMNIQEDSDCVIGIHYPERLIDLNVAC 499


>gi|78185218|ref|YP_377653.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
 gi|78169512|gb|ABB26609.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
          Length = 496

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 213/484 (44%), Gaps = 49/484 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ +VW + DLRI D++ L  A  +    V+ +++     W+Q   S RQ  F   SLL 
Sbjct: 3   ALQIVWFKRDLRIVDHRPLIEA--SKRGPVLPLYVVETRLWQQPDSSKRQWLFCRESLLD 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           +Q++L+  G            D +E L+   LQ  +  L+ + +       +RDK +   
Sbjct: 61  LQRALATLGQPLVLRS----GDVVEVLERARLQFGIDALWSHEETGNGWTYQRDKRVGAW 116

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +   IC      V +P   +             + + + + + Q      P    RL G
Sbjct: 117 AKQHGIC-----WVEIPQFGVTRRLTSRNGWAKRWEEQMAEPITQP-----PTSLPRLDG 166

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYVEQRDIP--A 238
            + P  IP   D P  AI P  P       G +      R F  ++V  Y      P  A
Sbjct: 167 -LDPGKIP---DLPPGAIAPD-PCPHRQLGGRRQGELEFRDFLNQRVERYCSSISSPNKA 221

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             G S+LS YL+ G LS R+   + +       +K + G  S+ + L W   +   +   
Sbjct: 222 FTGCSRLSAYLTWGCLSMREVLQQSR------TVKGR-GVNSFGSRLHWHCHFIQKLEDE 274

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PS+   + F P    +  + D   LQAW +G TG P +DA MR L   GW++ R+R +  
Sbjct: 275 PSIEF-QDFHPLMRGLR-DFDRVKLQAWAEGRTGVPFVDACMRALRAHGWINFRMRAMLM 332

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGKR 417
           SF   +L + WR    +   Q +D +   +   W Q    +G+ S+   RI+NP  QG+ 
Sbjct: 333 SFASYNLWLPWRQSGLHLARQFVDYEPGIH---WSQCQMQSGSTSINTIRIYNPIKQGRD 389

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            DP+G FIRHW PEL +VP  YIH P  W    +L    P PIVD   +     N+ ++ 
Sbjct: 390 HDPEGLFIRHWCPELRDVPEIYIHEP--W----ELGGGMPSPIVDVTASMQEAKNRIWSI 443

Query: 478 KKQS 481
           ++ +
Sbjct: 444 RRSA 447


>gi|298708263|emb|CBJ48326.1| cryptochrome 3 [Ectocarpus siliculosus]
          Length = 549

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 217/478 (45%), Gaps = 52/478 (10%)

Query: 8   SVHLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHF 60
           ++ +VW +  DLR+ D++ L A  H + + V  VF    ++W  H       +SA +  F
Sbjct: 22  TIGVVWFKCTDLRLEDHEPL-ALAHRNSSHVAHVFC-IDDRWFGHSRRGTRRMSAARCRF 79

Query: 61  IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--FYNRQYEIN 115
           +  S+  +Q  L  KG   ++ + H  +        L S      V       + + +++
Sbjct: 80  LLESVADLQTRLRAKGSDLLIRRGHPENAIPAVAARLGSGASAVTVYAHPDLCSEENDVH 139

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY--------KVYTPFRKALIQ 167
              +  L        V   +   SV    G+ L+    +         +V+TPFRKA+  
Sbjct: 140 AAVKSALSLVGSAGGVGGDATGVSVTEVWGNTLHDPSDLPYDFPNGLPEVFTPFRKAVEP 199

Query: 168 NLVQADLRS--------LPVPAIRLTGPVTPS---NIPRFFDYPFQAIDPM-------FP 209
           N     +RS         P+PA      VTP+    IP   +                F 
Sbjct: 200 N---CKIRSPVPLPSPFRPLPAGLHDNAVTPTLTVAIPTTEELGLGTAPERDARSVLHFI 256

Query: 210 IGEQNALHILRKFCKEKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
            GE   L  ++ +  E+ +   Y V +  +     +S+ SP+L++G LSPR     +++ 
Sbjct: 257 GGETAGLRRVQTYIWEEDHLREYKVTRNGLLGGGFSSKFSPWLALGCLSPRTIVKEIRKY 316

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNKDSHLLQ 324
             D +    +  +  + EL+ R+F+R+    Y +    +G      +++  W  D+ LL 
Sbjct: 317 ETDRIANDST--YWLIFELLVRDFFRYSAVKYGNAIFHLGGSRRD-SDRQTWRDDAGLLA 373

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           AWK+G TG+P +DA MR+L   G+M NR R + ASF  KDL +DWR+G E+F   LLD D
Sbjct: 374 AWKEGRTGYPFVDANMRELKASGFMSNRGRQVVASFFTKDLEMDWRLGAEHFEEYLLDYD 433

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            ASN G W + A  G D     R F+   Q + +D  G ++RHWLPEL  + T+ + +
Sbjct: 434 PASNYGNWNYVAGVGFDPRED-RYFSVEKQARTYDADGDYVRHWLPELAMLTTEALQS 490


>gi|156378195|ref|XP_001631029.1| predicted protein [Nematostella vectensis]
 gi|156218062|gb|EDO38966.1| predicted protein [Nematostella vectensis]
          Length = 498

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 140/509 (27%), Positives = 222/509 (43%), Gaps = 72/509 (14%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SVH  W R  LR+ DN+ L  A   SD     +F       +   +S     F+  SL  
Sbjct: 4   SVH--WFRKGLRLHDNEPLRRAIEGSDT-FRGIFFLDKAAVKNAKVSPNGWRFLIESLRD 60

Query: 68  VQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD---- 120
           + +SL +   +  + Q      F   I+       Q  ++KL +    E    +RD    
Sbjct: 61  LDQSLQKYNSRLFIIQGQPIDVFPKLIK-------QWNISKLTFEYDSEPFPRQRDLAVK 113

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--- 177
           ++ EK     ++C S      L     +   L+M +   P    L ++  +A +R L   
Sbjct: 114 RIAEKAGVDVIVCSSHT----LYDIECIEQILEMNEGKPP---VLFKDF-EAIVRKLGPP 165

Query: 178 --PVPAI------RLTGPVTPS-----NIPRFFDYPFQAID----PMFPIGEQNALHILR 220
             PV +I          P+T +      +P   +   +  D     M+  GE+ AL+ L 
Sbjct: 166 ENPVESITRKSFMNCICPITSTHSEKFGVPSLAELGIKPADVTCGDMWVGGEREALNRL- 224

Query: 221 KFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
              ++K+      ++           +QLSPYL  G LSP+  + +L   +V +   P  
Sbjct: 225 GILEDKILGSNSSKNCDGSSVLFPSRTQLSPYLRFGCLSPKLYYKKLTGAYVKMQFSPP- 283

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
              S   +LIWREF+  L +  P++       P   +I W ++      WKQG TGFP I
Sbjct: 284 -PMSLYRQLIWREFFFTLASKNPNMDQVNDN-PLCIQISWEENKDHFLCWKQGNTGFPWI 341

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           DA MRQL   GW+H+  R+    FL +  L + W  G   F    LD + + N+G W W 
Sbjct: 342 DAIMRQLQKEGWIHHLARLSVGCFLTRGCLWISWEEGLRAFEELQLDAEWSMNSGSWLWL 401

Query: 396 ASTG--NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-- 451
           + +   +  +P+   F P   GK+ DP G++IR ++PEL ++P +Y++ P  W   +D  
Sbjct: 402 SCSAFFHGQIPW---FCPVEVGKKLDPSGSYIRKYVPELRSMPLKYLYEP--WTAPDDIQ 456

Query: 452 ------LSLNYPLPIVDH---KKACHHTL 471
                 +  +YP PIVDH   +KAC   L
Sbjct: 457 RAAMCVIGEDYPHPIVDHIEQRKACLQRL 485


>gi|183986194|gb|AAI66277.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
          Length = 531

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 141/516 (27%), Positives = 219/516 (42%), Gaps = 80/516 (15%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+H  W R  LR+ DN AL AA  +  A++  +FI  P   R   +S  +  F+  +L  
Sbjct: 5   SIH--WFRKGLRLHDNPALLAAMKDC-AELYPIFILDPWFPRNMKVSVNRWRFLIEALKD 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           + ++L +    +F            E       + +VT+L +    E    +RD  +EK 
Sbjct: 62  LDENLKKINSRLFVVR-----GKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKL 116

Query: 126 RLQHRV------------ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
             +H V            I +   ++   PP + +     +  +  P R   +Q   Q +
Sbjct: 117 AAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRP--VQVPTQEN 174

Query: 174 LRSL------------PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
           ++               VP +   G  +    PR           ++P GE  AL  L  
Sbjct: 175 MKDCCTLWKSSYNEKYGVPTLEELGQDSLKLGPR-----------LYPGGESEALSRLEL 223

Query: 222 FCKEKV----YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             K       +   E         T+ LSPY+  G LS R  W R+ E +     K    
Sbjct: 224 HMKRTTWVCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWRIAEIYQGK--KHSDP 281

Query: 278 AFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
             S   +L+WREF+       P        +VC+         +++W  +   LQAW +G
Sbjct: 282 PVSLHGQLLWREFFYTAGVGIPNFNKMEGNTVCV---------QVDWGNNKEHLQAWSEG 332

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388
            TG+P IDA M QL T GW+H+  R   A FL + DL + W  G++ F   LLD D + N
Sbjct: 333 RTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLN 392

Query: 389 NGGWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----AP 443
            G WQW +AST      +FR+++P   GK+ D  G +I+ +LP L   P +YI+    AP
Sbjct: 393 AGNWQWLSASTFFHQ--FFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAP 450

Query: 444 HSWLDKND--LSLNYPLPIVDHKKACHHTLNQYYAA 477
            S  ++    +  +YP PIV+H  A    + +  AA
Sbjct: 451 RSLQERAGCIIGKDYPKPIVEHDVASKQNIQRMKAA 486


>gi|325180456|emb|CCA14862.1| cryptochrome putative [Albugo laibachii Nc14]
          Length = 639

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 164/336 (48%), Gaps = 41/336 (12%)

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCKEK--VYYYVEQRDIPA- 238
           + GP     +P   ++ F+       I  GE  AL IL+ +CK +  V  + + +  PA 
Sbjct: 280 IAGPEKLFRVPELSEFGFEKPGRHSFIYGGENIALKILQTYCKNEGQVVKFEKPKTSPAE 339

Query: 239 ---IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
               + T+ LSPYL  G +S R  ++R+++          +   S   +L+WREF+    
Sbjct: 340 TCPSKSTTSLSPYLYFGCMSTRTFYHRVRDIQNRHAKASSAPPVSLDGQLLWREFFHCNG 399

Query: 296 AFYPSV--CMGKP---FIPW---------TEKIEWNKDSHL----LQAWKQGYTGFPIID 337
              P      G P   +I W          E+    +D  L     +AWK+G TG+P ID
Sbjct: 400 HANPQFDKMEGNPLCLYIDWRWHTLPSTKEEEDALPEDEKLAKAQFEAWKEGQTGYPWID 459

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GWMH+  R   A FL + DL + W  G E F  +L+D D + N G W W +
Sbjct: 460 AIMIQLKEEGWMHHLARHSVACFLTRGDLYISWVRGLEVFQERLIDHDWSINCGNWLWLS 519

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--------LD 448
           ++   +  YFR+++P+  GK++D +G FIR ++P L  +P++YI+ P  W        L 
Sbjct: 520 ASAFFTA-YFRVYSPSTFGKKWDAEGKFIRKYIPALAKMPSKYIYEP--WKAPVTVQRLA 576

Query: 449 KNDLSLNYPLPIVDHKKA---CHHTLNQYYAAKKQS 481
              +  +YP PIVDHK A   C   +   YAA++ S
Sbjct: 577 NCLVGKDYPFPIVDHKIAMRRCMAGMKASYAARRYS 612


>gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster]
          Length = 540

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 145/518 (27%), Positives = 226/518 (43%), Gaps = 58/518 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53
           M +  +  VH  W R  LR+ DN AL   + A + +  K  V  +FI  P    W Q  +
Sbjct: 1   MDSQRSTLVH--WFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQ--V 56

Query: 54  SARQSHFIYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYN 109
            A +  F+  +L  +    + L+ +  V +      F    + W        RV  L + 
Sbjct: 57  GANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSW--------RVEMLTFE 108

Query: 110 RQYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRK--ALI 166
              E   V RD  ++K  +   V  ++     +  P   L  A  + K    ++K   ++
Sbjct: 109 TDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPE--LVKAKNLGKAPITYQKFLGIV 166

Query: 167 QNL-------VQADLRSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN 214
           + L       V   L+ +P P       + +       I +    P +     FP GE  
Sbjct: 167 EQLKVPKVLGVPEKLKKMPTPPKDEVEQKDSAAYDCPTIKQLVKRPEELGPNKFPGGETE 226

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           AL  + +  K++++    ++   A       T+ LSPYL  G LS R    +LKE  +  
Sbjct: 227 ALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKR 285

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
             K      S + +L+WREFY  + A  P+    +G  +     +I W +    L+AW  
Sbjct: 286 QPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYC---MQIPWQEHPDHLEAWTH 342

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387
           G TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A 
Sbjct: 343 GRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWAL 402

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HS 445
           N G W W +++      YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P   S
Sbjct: 403 NAGNWMWLSASAFFHQ-YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPATCIYEPWKAS 461

Query: 446 WLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            +D+      L  +YP  IV H+      + +  AA K
Sbjct: 462 LVDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba]
 gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba]
          Length = 540

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 138/512 (26%), Positives = 218/512 (42%), Gaps = 46/512 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53
           M A  +  VH  W R  LR+ DN AL   ++A + +  K  V  +FI  P    W Q  +
Sbjct: 1   MDAQRSTLVH--WFRKGLRVHDNPALSQIFSAANAAPGKYFVRPIFILDPGILDWMQ--V 56

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A +  F+  +L  +   L +        +    D       S+    RV  L +    E
Sbjct: 57  GANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPADVFPRIFKSW----RVEILSFETDIE 112

Query: 114 INEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              + RD  ++K  +   V  +++    +  P  ++   L    +       +++ L   
Sbjct: 113 PYSMTRDAAVQKLAKTEGVKVETYCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLP 172

Query: 173 DLRSLPVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILR 220
            +   P     +T P                 + +    P +     FP GE  AL  + 
Sbjct: 173 KVLGSPEKLTNITSPPKDEVEQEDLAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRME 232

Query: 221 KFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
              K++++    ++   A       T+ LSPYL  G LS R  + +L E  +    K   
Sbjct: 233 DSLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFYQKLTE-IIKRQSKHSQ 291

Query: 277 GAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
              S + +L+WREFY  + A  P+    +G  +     +I W +    L+AW  G TG+P
Sbjct: 292 PPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPDHLEAWTHGRTGYP 348

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
            IDA MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W 
Sbjct: 349 FIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWM 408

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKND 451
           W +++      YFR+++P   GK+ DPQG +IR ++PEL+  P+  I+ P   S  D+  
Sbjct: 409 WLSASAF-FYQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIYEPWKASLADQRA 467

Query: 452 ----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
               L  +YP  IV H+      + +  AA K
Sbjct: 468 YGCVLGTDYPHRIVKHEVVHKDNIKRMGAAYK 499


>gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
           subsp. patens]
 gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
           subsp. patens]
          Length = 526

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 143/518 (27%), Positives = 224/518 (43%), Gaps = 63/518 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP---------EQWRQHGISARQSHFI 61
           L+W R  LR+ DN AL  +C  + + V  VF+  P                +   +  F+
Sbjct: 6   LMWFRKGLRLHDNPALLRSCEGA-SHVYPVFVLDPWFLAPDPTAPSPGSKLVGVNRIRFL 64

Query: 62  YASLLQVQKSLSQKG---IVFQYHQCSNFDDSI-EW-LDSYCLQQRVTKLFYNRQYEINE 116
             SL  + ++L + G   +V   +  +   + + +W ++  C +        +R  +I +
Sbjct: 65  LQSLEDLDENLRKHGSRLLVLHGNPTTVIPELLMKWQINELCFEFDTEPYAQDRDADIKK 124

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--VQADL 174
           +     +E       +      ++  P  +I  +  Q    Y  F K   +    V A L
Sbjct: 125 LATKYGVE-------VFSPVSHTLFNPIDTIRKNGGQTPLTYQAFLKLTGKPPLPVTAPL 177

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEK--VYY 229
           + +P P   L   V    +P+  D  +  +D  F   P GE  AL  L K    +  V  
Sbjct: 178 Q-IPSPPEDLND-VHVVPVPKLEDLGYVNLDEEFSPHPGGETEALRRLDKSLVNQKWVCD 235

Query: 230 YVEQRDIPAI---QGTSQLSPYLS------------IGVLSPRQCWNRLKEEFVDLLIKP 274
           + + +  P       T+ LSPYL              G LS R    RL   +     K 
Sbjct: 236 FEKPKGNPTAFIEPATTVLSPYLKASNLGFLLKPMLFGCLSCRLFHQRLLAVYSQN-KKH 294

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
            S   S   +L+WREF+       P+    +G P     ++I W  D  LL AW+ G TG
Sbjct: 295 SSPPVSLEGQLLWREFFYTAGYGTPNFDRMLGNPI---CKQIPWKDDDRLLAAWRDGQTG 351

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           +P IDAAM QL   GWMH+  R   A FL + D+ V W  G + F   L+D D A NNG 
Sbjct: 352 YPWIDAAMVQLRKWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDSDWAINNGN 411

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWL 447
           W W +++      Y RI++P   GK++DP G +++H+LP L ++P  YI+    AP +  
Sbjct: 412 WLWLSASAFFHQ-YHRIYSPVTFGKKYDPDGLYVKHFLPVLKDMPKYYIYEPWTAPLAVQ 470

Query: 448 DKND--LSLNYPLPIVDHK---KACHHTLNQYYAAKKQ 480
            K +  + ++YP PIVDH    K C   +   Y+  + 
Sbjct: 471 KKANCIIGVDYPRPIVDHSIANKECREKMGIAYSQNRS 508


>gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
 gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
 gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
 gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
 gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster]
          Length = 540

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 140/515 (27%), Positives = 223/515 (43%), Gaps = 52/515 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53
           M +  +  VH  W R  LR+ DN AL   + A + +  K  V  +FI  P    W Q  +
Sbjct: 1   MDSQRSTLVH--WFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQ--V 56

Query: 54  SARQSHFIYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110
            A +  F+  +L  +    + L+ +  V +      F    +         RV  L +  
Sbjct: 57  GANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFK-------SWRVEMLTFET 109

Query: 111 QYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
             E   V RD  ++K  +   V  ++     +  P  ++   L    +       +++ L
Sbjct: 110 DIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQL 169

Query: 170 -------VQADLRSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
                  V   L+++P P       + +       + +    P +     FP GE  AL 
Sbjct: 170 KVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALR 229

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            + +  K++++    ++   A       T+ LSPYL  G LS R    +LKE  +    K
Sbjct: 230 RMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPK 288

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
                 S + +L+WREFY  + A  P+    +G  +     +I W +    L+AW  G T
Sbjct: 289 HSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPDHLEAWTHGRT 345

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390
           G+P IDA MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G
Sbjct: 346 GYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAG 405

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLD 448
            W W +++      YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P   S +D
Sbjct: 406 NWMWLSASAFFHQ-YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVD 464

Query: 449 KND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +      L  +YP  IV H+      + +  AA K
Sbjct: 465 QRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia]
 gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia]
          Length = 540

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 142/516 (27%), Positives = 220/516 (42%), Gaps = 54/516 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53
           M A  +  VH  W R  LR+ DN AL   + A + +  K  V  +FI  P    W Q  +
Sbjct: 1   MDAQRSTLVH--WFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQ--V 56

Query: 54  SARQSHFIYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYN 109
            A +  F+  +L  +    + L  +  V +      F    + W        RV  L + 
Sbjct: 57  GANRWRFLQQTLEDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSW--------RVEMLTFE 108

Query: 110 RQYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
              E   + RD  ++K  +   V  ++     +  P  ++   L    +       ++  
Sbjct: 109 TDIEPYSLTRDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQ 168

Query: 169 L-------VQADLRSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL 216
           L       V   L+ +P P       + +       + +    P +     FP GE  AL
Sbjct: 169 LKVPKVLGVPEKLKKMPTPPKDEVEQKDSAAYDCPTMEQLVKRPEELGPNKFPGGETEAL 228

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
             + +  K++++    ++   A       T+ LSPYL  G LS R    +LKE  +    
Sbjct: 229 RRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQP 287

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
           K      S + +L+WREFY  + A  P+    +G  +     +I W K    L+AW  G 
Sbjct: 288 KHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQKHPDHLEAWTHGR 344

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389
           TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N 
Sbjct: 345 TGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNA 404

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWL 447
           G W W +++      YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P   S  
Sbjct: 405 GNWMWLSASAFFHQ-YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLA 463

Query: 448 DKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           D+      L  +YP  IV H+      + +  AA K
Sbjct: 464 DQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|328857597|gb|EGG06713.1| hypothetical protein MELLADRAFT_48359 [Melampsora larici-populina
           98AG31]
          Length = 579

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 149/553 (26%), Positives = 224/553 (40%), Gaps = 124/553 (22%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW----------------- 48
           A SV +   RNDLR+ DN  ++ A  +S   V    +  P  +                 
Sbjct: 2   AKSVTIALFRNDLRVHDNPIIFHAHSSSQKGVDKTRVQRPSDYYLPIYVFDERMVELSGL 61

Query: 49  ---RQHGISARQS------------HFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSI 91
              ++ G  AR               F+  S+ ++Q  L Q+G  +V ++        SI
Sbjct: 62  PGYQREGSEARTGVCGFWRTGCHRLKFLCESVYELQHQLKQRGSDLVIRFGSIEKVTLSI 121

Query: 92  EWLDSYCLQQ---RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS---FDDSVLLPPG 145
                  LQ    +V ++  N++Y   E+  +  +++ L+   I      F    L+ P 
Sbjct: 122 ----IQALQDTDVKVDQILINKEYASEEIETEVKIDEALKSFKISVPLLFFHTRSLVHPE 177

Query: 146 SILNHALQMYKVYTPFRK--------ALIQNLVQADLRSLPVPAIRLTGP---------- 187
            +     +   VYTPFRK         L + L+    R + +P ++   P          
Sbjct: 178 DLPFLPSKTPDVYTPFRKHIESLPEQKLCRPLLPCPDRLIGMPPLKEIAPQRGNSGSSYD 237

Query: 188 -VTPSNIPRFFDYPF-QAID---PMFPI----------------GEQNALHILRKFC--- 223
            +   NI      P  Q  D   P FP                 GE   L  +  +    
Sbjct: 238 TMKMDNILESLMKPLLQCPDLACPAFPKLSSYNFDDRSAFPYKGGESEGLRRINDYFYTG 297

Query: 224 -KEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
               V  Y + R+    Q  +++ SP+L+ G LSPR+    L+E   +         +  
Sbjct: 298 NPAPVRSYKDTRNGLLGQSYSTKFSPFLAHGCLSPRKIILELREH--EKKFGANKDTYWV 355

Query: 282 LNELIWREFYRHLMAFYPSVCMG--------------------KPFIPWTEKIEWNKDSH 321
           L EL+WR+++  +   Y +                        KPF    + ++ N++  
Sbjct: 356 LFELLWRDYFVFITQKYGTALFKLGGFEGVLNPKAASQKIHQWKPF----QNLKMNQNQQ 411

Query: 322 LLQA-------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
             +A       W +  TG P +DA M +L   G+M NR R   ASFL KDL VDWRIG E
Sbjct: 412 GSRAINQAASRWLKAETGIPFLDANMAELRLTGFMSNRGRQNVASFLTKDLYVDWRIGAE 471

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
           +F SQLLD D +SN G WQ+ A  GND     R FNP  Q K +D +G ++R WLPEL  
Sbjct: 472 FFESQLLDYDPSSNYGNWQYVAGVGNDPRAS-RQFNPIKQAKDYDAKGEYVRCWLPELAK 530

Query: 435 VPTQYIHAPHSWL 447
           VP + IH P  WL
Sbjct: 531 VPQKSIHNP--WL 541


>gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
           With A T-T (6-4) Photolesion
 gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
           Ds Dna
 gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
           Stranded Dna Containing A T(6-4)c Photolesion
 gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
           With A T-T (6-4) Photolesion And F0 Cofactor
 gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
           Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
 gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
           Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
          Length = 543

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 139/515 (26%), Positives = 223/515 (43%), Gaps = 52/515 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53
           M +  +  VH  W R  LR+ DN AL   + A + +  +  V  +FI  P    W Q  +
Sbjct: 24  MDSQRSTLVH--WFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQ--V 79

Query: 54  SARQSHFIYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110
            A +  F+  +L  +    + L+ +  V +      F    +         RV  L +  
Sbjct: 80  GANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFK-------SWRVEMLTFET 132

Query: 111 QYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
             E   V RD  ++K  +   V  ++     +  P  ++   L    +       +++ L
Sbjct: 133 DIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQL 192

Query: 170 -------VQADLRSLPVPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
                  V   L+++P P       + +       + +    P +     FP GE  AL 
Sbjct: 193 KVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALR 252

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            + +  K++++    ++   A       T+ LSPYL  G LS R    +LKE  +    K
Sbjct: 253 RMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPK 311

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
                 S + +L+WREFY  + A  P+    +G  +     +I W +    L+AW  G T
Sbjct: 312 HSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPDHLEAWTHGRT 368

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390
           G+P IDA MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G
Sbjct: 369 GYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAG 428

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLD 448
            W W +++      YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P   S +D
Sbjct: 429 NWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVD 487

Query: 449 KND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +      L  +YP  IV H+      + +  AA K
Sbjct: 488 QRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 522


>gi|329894043|ref|ZP_08270028.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma
           proteobacterium IMCC3088]
 gi|328923215|gb|EGG30535.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma
           proteobacterium IMCC3088]
          Length = 431

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 197/430 (45%), Gaps = 34/430 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69
           L+WL+NDLR+ DN     A   S+  ++  +   P  W    G+ A+++ F+  +L  ++
Sbjct: 4   LLWLQNDLRLADNAGFQLASQASELLIVYCW-PKPRPWCNLTGLGAQRTRFLSETLEHLR 62

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
             LS+ G    V   H        IE L        +  L  +R    NE    K L+  
Sbjct: 63  HQLSELGQDVFVSVQHPEQVLPLMIEELG-------IEHLITSRPQAYNESNSLKALQDA 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIR 183
           L   V       + L     +      + K +TPFRK +    +   L   + LP     
Sbjct: 116 LDCNVSVTR--GNTLFDEDDLTFDLADLPKHFTPFRKKMEAQPIAEPLATPKQLPPKITE 173

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRK--FCKEKVYYYVEQRD-IPA 238
           +    TPSN  R          P FP   GEQ AL  ++   F ++ +  Y + R+ +  
Sbjct: 174 VRYGPTPSNNTR--------PHPTFPYRGGEQEALRRIKHWVFDRQAIATYKQTRNALDG 225

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +   S LSP+L+ G +SPR   + + + F + +   +S  + +  EL+WREF+ +  A  
Sbjct: 226 LDNYSALSPWLATGAVSPRTILHHV-QRFENEVTANESTYWVFF-ELLWREFF-YWRAQI 282

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             V +  P+    +K     D      W +G T +P+++A M QL   G+M NR R I A
Sbjct: 283 DGVHLFLPYGVARKKQLRTFDPRQFTRWCRGETNYPLVNALMHQLVRSGFMSNRGRQIAA 342

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S L+ DL VDWR G  +F   L+D D+ASN G WQ+ A  G+D     R FN   Q +++
Sbjct: 343 SSLIHDLGVDWRYGAAFFEKYLIDFDVASNYGNWQYIAGVGSDPRGG-RHFNIDKQTEQY 401

Query: 419 DPQGTFIRHW 428
           DP+G FI  W
Sbjct: 402 DPKGLFITQW 411


>gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta]
 gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta]
          Length = 540

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/285 (34%), Positives = 143/285 (50%), Gaps = 18/285 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           FP GE  AL  +    K++++    ++   A       T+ LSPYL  G LS R    +L
Sbjct: 220 FPGGETEALRRMEDSLKDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKL 279

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSH 321
           KE  +    K      S + +L+WREFY  + A  P+    MG  +     +I W +  +
Sbjct: 280 KE-IIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMMGNVY---CMQIPWQEHPN 335

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380
            L+AW  G TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G+  F   L
Sbjct: 336 HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLL 395

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD D A N G W W +++      YFR+++P   GK+ DPQG +IR ++PEL+  P+  I
Sbjct: 396 LDQDWALNAGNWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCI 454

Query: 441 HAP--HSWLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + P   S  D+      L  +YP  IV H+      + +  AA K
Sbjct: 455 YEPWKASLADQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|221068159|ref|ZP_03544264.1| cryptochrome, DASH family [Comamonas testosteroni KF-1]
 gi|220713182|gb|EED68550.1| cryptochrome, DASH family [Comamonas testosteroni KF-1]
          Length = 431

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 131/456 (28%), Positives = 194/456 (42%), Gaps = 62/456 (13%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  L+WLRNDLR+ D   L+AAC      ++ V      Q R H   AR      A L 
Sbjct: 1   MSTLLLWLRNDLRLHDQPVLHAACRMGAQYILPVLCLPDIQARTHWGFARIGPHRRAWLA 60

Query: 67  QVQKSLSQKGIVFQYHQCSN----FDDSIEWLDSYCLQQRVTKLFY-------NRQYEIN 115
              ++L+Q      +H+  +     D           Q     +         + Q E+ 
Sbjct: 61  NTIQNLAQS-----FHELRSQLLILDAPAAVALPALAQALGAGIIVCEDIAAPDEQAEVQ 115

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
            +R   L    + H         S LL P  +     Q+  ++TPFR+A+      A L+
Sbjct: 116 ALRAAGLQVHTVWH---------SSLLHPDQLPWPMRQLPDIFTPFRQAV----EHAKLQ 162

Query: 176 SLPVPAIRLTGPVTPSNIPR-----------FFDYPFQAIDPMFPI-----GEQNALHIL 219
             P   +    P  P NIP             F     ++D    I     GE  AL  L
Sbjct: 163 PYPPLPVLEALPRVPPNIPSKYRQEQVLALDAFANASNSLDARSAIALLQGGESAALAHL 222

Query: 220 RKFCKEKV--YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
           R++    +   Y   +  +  +  +S+ S +L+ G LSPRQ +  L++ F       +S 
Sbjct: 223 RQYLARGLPHSYKRTRNGLVGLDYSSKWSLWLATGALSPRQAYAELRQ-FEATRGATESS 281

Query: 278 AFSWLNELIWREFYR-----HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
            + W  EL+WR+++R     H  A Y +  +G        ++    D     AW  G TG
Sbjct: 282 YWLWF-ELLWRDYFRFLHMQHGRALYRARGLGP-------ELATPHDDQNFAAWCSGQTG 333

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
             ++DAAMR+L   G++ NRLR + AS+L+ DL  DWR G  +F SQLLD D+ SN G W
Sbjct: 334 QTLVDAAMRELAATGYLGNRLRQVAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNW 393

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
            + A  G D     R F+P  Q   +D  G + R W
Sbjct: 394 LYIAGRGTDPQG-GRRFDPVKQAATYDADGAYQRLW 428


>gi|301622212|ref|XP_002940429.1| PREDICTED: cryptochrome-1-like [Xenopus (Silurana) tropicalis]
          Length = 531

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 139/514 (27%), Positives = 219/514 (42%), Gaps = 76/514 (14%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+H  W R  LR+ DN AL AA  +  A++  +FI  P   R   +S  +  F+  +L  
Sbjct: 5   SIH--WFRKGLRLHDNPALLAAMKDC-AELYPIFILDPWFPRNMKVSVNRWRFLIEALKD 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           + ++L +    +F            E       + +VT+L +    E    +RD  +EK 
Sbjct: 62  LDENLKKINSRLFVVR-----GKPTEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKL 116

Query: 126 RLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---------IQNLVQADLR 175
             +H V + +   +++      I  +  +    Y  F+  L         +Q   Q +++
Sbjct: 117 AAEHNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLALLGPPKRPVQVPTQENMK 176

Query: 176 SL------------PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                          VP +   G  +    PR           ++P GE  AL  L    
Sbjct: 177 DCCTLWKSSYNEKYGVPTLEELGQDSLKLGPR-----------LYPGGESEALSRLELHM 225

Query: 224 KEKV----YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K       +   E         T+ LSPY+  G LS R  W R+ + +     K      
Sbjct: 226 KRTTWVCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWRIADIYQGK--KHSDPPV 283

Query: 280 SWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
           S   +L+WREF+       P        +VC+         +++W  +   LQAW +G T
Sbjct: 284 SLHGQLLWREFFYTAGVGIPNFNKMEGNTVCV---------QVDWGNNKEHLQAWSEGRT 334

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390
           G+P IDA M QL T GW+H+  R   A FL + DL + W  G++ F   LLD D + N G
Sbjct: 335 GYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAG 394

Query: 391 GWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHS 445
            WQW +AST      +FR+++P   GK+ D  G +I+ +LP L   P +YI+    AP S
Sbjct: 395 NWQWLSASTFFHQ--FFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRS 452

Query: 446 WLDKND--LSLNYPLPIVDHKKACHHTLNQYYAA 477
             ++    +  +YP PIV+H  A    + +  AA
Sbjct: 453 LQERAGCIIGKDYPKPIVEHDVASKQNIQRMKAA 486


>gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster]
          Length = 540

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 143/285 (50%), Gaps = 18/285 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           FP GE  AL  + +  K++++    ++   A       T+ LSPYL  G LS R    +L
Sbjct: 220 FPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKL 279

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSH 321
           KE  +    K      S + +L+WREFY  + A  P+    +G  +     +I W +   
Sbjct: 280 KE-IIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPD 335

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380
            L+AW  G TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G+  F   L
Sbjct: 336 HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLL 395

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD D A N G W W +++      YFR+++P   GK+ DPQG +IR ++PEL+  P   I
Sbjct: 396 LDQDWALNAGNWMWLSASAFFHQ-YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCI 454

Query: 441 HAP--HSWLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + P   S +D+      L  +YP  IV H+      + +  AA K
Sbjct: 455 YEPWKASLVDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|255324708|ref|ZP_05365822.1| deoxyribodipyrimidine photolyase [Corynebacterium
           tuberculostearicum SK141]
 gi|255298183|gb|EET77486.1| deoxyribodipyrimidine photolyase [Corynebacterium
           tuberculostearicum SK141]
          Length = 158

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 60/114 (52%), Positives = 79/114 (69%)

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L+ W+ G TG P++DA MR+L   G+MHNR+RM+  SFL K+L + WR+GEE+F   L+D
Sbjct: 25  LKDWQAGTTGIPLVDAGMRELWATGYMHNRVRMVVGSFLTKNLGIHWRLGEEWFWDTLVD 84

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436
            D ASN   WQW A  G+D+ P+FRIFNP  Q KRFDP G ++R W P L+  P
Sbjct: 85  ADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAKRFDPDGEYVRRWAPALSAPP 138


>gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST]
 gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST]
          Length = 556

 Score =  143 bits (361), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 220/506 (43%), Gaps = 52/506 (10%)

Query: 13  WLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           W R  LRI DN AL  A     A      +  +F+  P   +   +   +  F+  +L  
Sbjct: 10  WFRKGLRIHDNPALTVAVDKVRANPAKYCLRPIFVLDPGIRKWLRVGPNRWRFLQQTLAN 69

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + ++L  + I  + +      + +E          V+ L Y    E   V+RD  +E++ 
Sbjct: 70  LDENL--RSINSRLYVVRG--NPVEVFPKLFADWNVSLLTYEHDIEPYAVKRDSTVEEQA 125

Query: 128 QHRVICKSFDDS--VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +   +    + S  +  P G +  +  +    Y   R A + +  +   + LPVP     
Sbjct: 126 RKHWVEVHIEKSHTIFDPEGIVKKNGGKPPLTYQ--RYATLASACKIP-QPLPVPQKLPA 182

Query: 186 GPVTPS------NIPRFFDYP-FQAID--------PMFPIGEQNALHILRKFCKEKVYYY 230
              +P         P  +D P  + +D          FP GE  AL  + +    K +  
Sbjct: 183 KETSPEADKEERKNPSCYDPPTMEELDIEEASMGQCKFPGGESEALRRMNEILSRKAW-- 240

Query: 231 VEQRDIPAIQ------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           V + + P          T+ LSPYL  G LS R  ++R+ E       K      S + +
Sbjct: 241 VCKFEKPNTSPNSLEPSTTVLSPYLKFGCLSVRLFYSRIAETIKGQ--KHSQPPVSLIGQ 298

Query: 285 LIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           ++WREFY  + A  P+    +G        +I+W+ +   L+AW  G TG+P IDA MRQ
Sbjct: 299 VMWREFYYCVAAATPNYDKMVGNGIC---TQIDWDTNKDYLEAWTHGRTGYPFIDAIMRQ 355

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++   
Sbjct: 356 LRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSASAFF 415

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLDKND-----LSLN 455
              YFR+++P   GK+ DP+G FI+ ++PEL   P   I+ P  + L+        +  +
Sbjct: 416 HQ-YFRVYSPVAFGKKTDPEGKFIKKYVPELARFPAGIIYEPWKANLETQKKLGCIIGKD 474

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQS 481
           YP+ IV H+      + +  AA K++
Sbjct: 475 YPMRIVVHEDISKVNIQRMSAAYKRN 500


>gi|3986298|dbj|BAA35000.1| blue light photoreceptor [Drosophila melanogaster]
          Length = 542

 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 130/478 (27%), Positives = 214/478 (44%), Gaps = 52/478 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65
             +++W R+ LR+ DN AL AA  + D  +  I VFI   E      +   +  F+  SL
Sbjct: 5   GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64

Query: 66  L----QVQKSLSQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEV 117
                Q+Q +   +G  +VF+      F    E   L   C++Q    ++  R   I  +
Sbjct: 65  QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSL 124

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-GSILNHALQMYK-----VYTPFRKALIQNLVQ 171
            R+  L      +V    +D  +++   G I     QM+      +  P R      L  
Sbjct: 125 CRE--LNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLED 182

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKV 227
           A    L     R          P  F+     +  +  I    GE  ALH+L +  K + 
Sbjct: 183 ATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALHLLDERLKVEQ 242

Query: 228 Y-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------K 275
           +     +Y+  + +P I  + + +S +L  G LS R+ +  + + F ++ ++        
Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302

Query: 276 SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327
           +G      +LIWRE++  +    P+        +C+    IPW +    N+D  LLQ+W+
Sbjct: 303 TGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLS---IPWAKP---NED--LLQSWR 354

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386
            G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +
Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWS 414

Query: 387 SNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
              G W W +S+  + +    +   P    KR DP GT+I+ ++PEL NVP +++H P
Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEP 472


>gi|302761504|ref|XP_002964174.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii]
 gi|300167903|gb|EFJ34507.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii]
          Length = 539

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 198/423 (46%), Gaps = 29/423 (6%)

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL+Q+  SL + G      + +   D+   L         +++FYN  Y+   + RD  +
Sbjct: 9   SLIQLSSSLERLGAPLLVKRVAGTLDA---LLQIAHDTGASQVFYNHLYDPVSLIRDHRV 65

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPA 181
           ++ L  H +   +F   +L  P  I +   Q +  +  F  K+L     +A L   P   
Sbjct: 66  KQGLADHGISVTTFRGDLLYEPWEIYDDQGQAFTTFQAFWSKSLSMRDPEAPLLP-PRQL 124

Query: 182 IRLTGPVTPS------NIPRFFDYPFQAI-----DPMFPIGEQNALHILRKFCKEKVYYY 230
           + L G +  S       +    +    A+      P +  G++     L       + Y 
Sbjct: 125 LSLPGYLCQSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFL---SGPILQYS 181

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWRE 289
           + ++ I ++  TSQLSP+L  G +S R+ +  ++ ++F             +L  L  RE
Sbjct: 182 IRRKQIDSVT-TSQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDFESMNMFLRALGLRE 240

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R+L   +P     +  +   +   W  D    ++W+QG TG+P++DA MRQL   GW+
Sbjct: 241 YSRYLSFNFP-FTHKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATGWL 299

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           H ++R++ +SFLVK L V W  G +YF   LLD D+ ++  GWQ+ +    D     R  
Sbjct: 300 HCKIRVVVSSFLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRWE 359

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDH 463
           NP  +G + DP+G ++R WLPEL+ VP  +IH    AP + L    + L  NYP PIV+ 
Sbjct: 360 NPQEEGYKLDPKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVEV 419

Query: 464 KKA 466
             A
Sbjct: 420 AAA 422


>gi|312883173|ref|ZP_07742904.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369333|gb|EFP96854.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 487

 Score =  143 bits (360), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 138/505 (27%), Positives = 226/505 (44%), Gaps = 72/505 (14%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L+WL+ DLR+TD++ALYAA  +    +I  ++  P        S R   F+Y SL+ +
Sbjct: 4   INLLWLKRDLRLTDHEALYAATQSGRPTLI-FYLFEPFLLDNPHYSERHWRFVYQSLVDM 62

Query: 69  QKSLS--QKGI------VFQYHQ--CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            + L    + I      +F + +  CS +D  +E L SY  Q+   K+ +NR  E+ +  
Sbjct: 63  NRRLEPLNRSITIATTDIFHFLEAVCSTYD--VEMLYSY--QEIGLKVTFNRDLEVAQYC 118

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-- 176
           +        QH +  + F      P G+++  A    K    + K +   L    L+   
Sbjct: 119 K--------QHTIAWQEF------PTGAVIRGARSRDKWDKNWAKTMRSPLATVHLKKEH 164

Query: 177 -LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            LP     L+    P +IP  +    Q    M   G   A   L  F + +   Y +   
Sbjct: 165 LLPYSEKTLS---LPCHIPNAWRSKTQG---MQTGGSDLAWKTLDDFFERRGKNYYKSLS 218

Query: 236 IPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P +  +  S+LSPYL+ G +S R+ + R+ E +     +    A S  + L W   + H
Sbjct: 219 SPTLSRKACSRLSPYLAWGNISLREVYQRVLEHWNTKGFRRSLTALS--SRLHW---HCH 273

Query: 294 LMAFYPSVC---------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
            +  + S C           +P +  +   E++K    LQAWK G TG P++DA MR L+
Sbjct: 274 FIQKFESECDMEFRCLNRAYEPLLSSSSSTEFDK----LQAWKSGQTGVPLVDACMRCLH 329

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+++ R+R +  SFL   +  DWR G E+  S  LD +   +   +Q  A  G   + 
Sbjct: 330 HTGYINFRMRAMLVSFLTHHMGFDWRYGVEHLASLFLDFEPGIHYAQFQMQA--GVTGIN 387

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW---------LDKNDLSLN 455
             RI+NP  Q +  DP G FI  W+PEL  +P   +++P            LD   + LN
Sbjct: 388 TIRIYNPIKQAQEHDPDGQFILRWVPELKGIPIPLLYSPSQITPMEAVLYDLDSESVYLN 447

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480
              PI+D + A     ++ +  KK+
Sbjct: 448 ---PIIDIEHAGRLARDRLWTWKKR 469


>gi|126695730|ref|YP_001090616.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. MIT 9301]
 gi|126542773|gb|ABO17015.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 498

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 126/468 (26%), Positives = 212/468 (45%), Gaps = 47/468 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++++W + DLRI DN+AL  A  ++D  ++ ++I   + W Q+  S RQ  F   SL+ 
Sbjct: 3   GINILWFKKDLRIFDNEALCEAIKDND--ILPIYIIELDIWNQNTHSDRQWQFCKESLID 60

Query: 68  VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE---INEVRRDKL 122
           ++ +L++ G  ++ +     N  D I         +   K  Y+ Q     +   R  K+
Sbjct: 61  LRNALAEIGQPLIIRTGNVINIFDEIS-------SKFKIKGLYSHQETGDWLTYKRDQKV 113

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            E  L   +I K F         S+    L        ++K   +NL++A LR   + +I
Sbjct: 114 REWALSKNIIWKEF------LQFSVFRGNLDRNNWSKKWQKNSEKNLLKAPLR---INSI 164

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240
            L     PS+  + F +  +        G +  L  ++ F   K+  Y +    P  +  
Sbjct: 165 NLNIGEIPSD--KIFSFKKETCPGRMQGGRKKGLERMQYFFSNKLDSYSKDISSPEKSFD 222

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             ++LSPY+  G +S       LKE F    I   + +    + L W   +   +   P 
Sbjct: 223 SCTRLSPYICWGCIS-------LKEIFKRANISKNNNSRMLKSRLTWHCHFIQKLESEPE 275

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +   + + P+ + I   K++ LL +W  G TGFP IDA MR LN  GW++ R+R +  SF
Sbjct: 276 LEF-REYHPFFKNIR-EKNNELLYSWSSGNTGFPFIDACMRSLNFNGWINFRMRAMLMSF 333

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGKRFD 419
              +L + W+       ++ +D +   +   W Q    +G  S+   RI+NP  QGK  D
Sbjct: 334 ASYNLWLPWQDSGSELANKFVDYEPGIH---WNQCQMQSGTTSINTNRIYNPIKQGKDHD 390

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL-----DKNDLSLNYPLPIVD 462
           PQG FI+ W+PEL ++   +IH P  WL      +    +NY  PI+D
Sbjct: 391 PQGKFIKKWIPELKDISLNFIHEP--WLLSIFNQEEYEKINYIRPIID 436


>gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans]
 gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans]
          Length = 540

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 142/285 (49%), Gaps = 18/285 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           FP GE  AL  + +  K++++    ++   A       T+ LSPYL  G LS R    +L
Sbjct: 220 FPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKL 279

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSH 321
           KE  +    K      S + +L+WREFY  + A  P+    +G  +     +I W +   
Sbjct: 280 KE-IIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVY---CMQIPWQEHPD 335

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380
            L+AW  G TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G+  F   L
Sbjct: 336 HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLL 395

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD D A N G W W +++      YFR+++P   GK+ DPQG +IR ++PEL+  P   I
Sbjct: 396 LDQDWALNAGNWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCI 454

Query: 441 HAP--HSWLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + P   S  D+      L  +YP  IV H+      + +  AA K
Sbjct: 455 YEPWKASLADQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|302844305|ref|XP_002953693.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
           nagariensis]
 gi|300261102|gb|EFJ45317.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
           nagariensis]
          Length = 1025

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 138/279 (49%), Gaps = 37/279 (13%)

Query: 208 FPIGEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           F  GE  AL  LR +  +      Y+  +  +     +++ +P+L+ G +SPR+ ++ ++
Sbjct: 265 FKGGETAALARLRYYLWDSDLIASYFDTRNGMLGGDYSTKFAPWLAAGCISPRKIYHEIR 324

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNK 318
           +   +   +     +  + ELIWR+++R          F+ +   G P +       WN 
Sbjct: 325 K--YEAQRQSNKSTYWVIFELIWRDYFRFFALKHGNRIFFETGTSGLPLV-------WNP 375

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D+ L   W+ G TG P++DA MR+L   G+M NR R   AS+LV DL +DWR G +YF S
Sbjct: 376 DADLWHRWRDGRTGLPLVDANMRELAATGFMSNRGRQNLASYLVLDLGIDWRRGADYFES 435

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRI---------FNPTIQGKRFDPQGTFIRHWL 429
           QLLD D+ SN G W  AA      + +F I         F      K +DPQG ++R W 
Sbjct: 436 QLLDYDVTSNWGNWVAAAGLAGGRINHFNIAKQASDVGAFRIGGGSKDYDPQGDYVRTWC 495

Query: 430 PELNNVPTQYIHAPHSWLDKND--------LSLNYPLPI 460
           PEL +VP   +H P  WL   +        + ++YP PI
Sbjct: 496 PELRHVPVGKVHEP--WLMSKEEQEKAGCRIGVDYPNPI 532



 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/279 (31%), Positives = 137/279 (49%), Gaps = 37/279 (13%)

Query: 208 FPIGEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           F  GE  AL  LR +  +      Y+  +  +     +++ +P+L+ G +SPR+ ++ ++
Sbjct: 709 FKGGETAALARLRYYLWDSDLIASYFDTRNGMLGGDYSTKFAPWLAAGCISPRKIYHEIR 768

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNK 318
           +   +   +     +  + ELIWR+++R          F+ +   G P +       WN 
Sbjct: 769 K--YEAQRQSNKSTYWVIFELIWRDYFRFFALKHGNRIFFETGTSGLPLV-------WNP 819

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D  L   W+ G TG P++DA MR+L   G+M NR R   AS+LV DL +DWR G +YF S
Sbjct: 820 DPDLWHRWRDGRTGLPLVDANMRELAATGFMSNRGRQNVASYLVLDLGIDWRRGADYFES 879

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRI---------FNPTIQGKRFDPQGTFIRHWL 429
           QLLD D+ SN G W  AA      + +F I         F      K +DPQG ++R W 
Sbjct: 880 QLLDYDVTSNWGNWVAAAGLAGGRINHFNIAKQASDVGAFRIGGGSKDYDPQGDYVRTWC 939

Query: 430 PELNNVPTQYIHAPHSWLDKND--------LSLNYPLPI 460
           PEL +VP   +H P  WL   +        + ++YP PI
Sbjct: 940 PELRHVPVGKVHEP--WLMSKEEQEKAGCRIGVDYPNPI 976


>gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi]
          Length = 558

 Score =  142 bits (358), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 128/507 (25%), Positives = 212/507 (41%), Gaps = 54/507 (10%)

Query: 13  WLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           W R  LRI DN AL  A        +   +  +F+  P   +   +   +  F+  +L+ 
Sbjct: 10  WFRKGLRIHDNPALSLAVDKVRQNPTKYCLRPIFVLDPAIRKWLRVGPNRWRFLQQTLVN 69

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + ++L          + +      E  D +     V+ L Y    E   V+RDK +E   
Sbjct: 70  LDENLRTINSRLYVVRGNPVQIFPELFDRW----NVSLLTYEHDIEPYAVQRDKTVEGHA 125

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQ----MYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            +H V         +  P +I+          Y+ Y     A    L     + LP   +
Sbjct: 126 REHNVTTHVEVSHTIFHPETIVKRNGGKPPLTYQKYVSLASACTIPLPLPAPQKLPGKGV 185

Query: 183 RLTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                         +D P            ++  FP GE  AL  + +    K +    +
Sbjct: 186 EPEKDSQERKDQSCYDPPTMNELDIDEGSLLECKFPGGETEALSRMEQCLSRKAWICSFE 245

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           +   +       T+ LSPYL  G LS R  ++R++E       K      S + +++WRE
Sbjct: 246 KPNTSPNSLEPSTTVLSPYLKFGCLSARLFYSRIQETIKGQ--KHSQPPVSLIGQMMWRE 303

Query: 290 FYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           FY  + A  P+        VC+         +++W+ +   L AW +G TG+P IDA MR
Sbjct: 304 FYYCVAAVTPNFDKMSGNDVCI---------QVDWDTNKEYLNAWTEGRTGYPFIDAIMR 354

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++  
Sbjct: 355 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMWLSASAF 414

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLDKND-----LSL 454
               YFR+++P   GK+ DP+G +I+ ++PEL   P+  I+ P  + L+        +  
Sbjct: 415 FHQ-YFRVYSPVAFGKKTDPEGKYIKKYVPELARFPSGIIYEPWKANLETQKKLGCIIGK 473

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +YP  IV H++     + +  AA +++
Sbjct: 474 DYPKRIVVHEEISKTNIQRMSAAYRRN 500


>gi|327271582|ref|XP_003220566.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
          Length = 438

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/279 (34%), Positives = 141/279 (50%), Gaps = 28/279 (10%)

Query: 211 GEQNALHILRKFCKEK--VYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           GE   L  L +  K +  +  + + R IP   +  T+ LSPY S+G LS R  + RL + 
Sbjct: 120 GETTGLQRLEEHMKNQGWIAKFTKPRTIPNSLLPSTTGLSPYFSLGCLSVRMFFYRLSK- 178

Query: 267 FVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSVC--MGKPFIPWTEKIEWNKDSH 321
              +  + K+ +    S   +L+WREF+  + +  P+    +G P      +IEW +D+ 
Sbjct: 179 ---IYAQSKNHSLPPVSLQGQLLWREFFYTVASATPNFTKMVGNPIC---LQIEWYEDAE 232

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380
            L  WK   TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   L
Sbjct: 233 KLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELL 292

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD D + N G W W +++      Y RIF P   GKR DP+G +IR +LP L N P++YI
Sbjct: 293 LDSDYSINAGNWMWLSASAFFHQ-YSRIFCPVRFGKRTDPEGHYIRKYLPVLKNFPSKYI 351

Query: 441 HAPHSWLDKND--------LSLNYPLPIVDHKKACHHTL 471
           + P  W    +        +   YP P+V+HK+   + L
Sbjct: 352 YEP--WTAPAEAQREAGCIIGKEYPFPMVNHKEVSDNNL 388


>gi|126727582|ref|ZP_01743415.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2150]
 gi|126703172|gb|EBA02272.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2150]
          Length = 511

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/492 (24%), Positives = 208/492 (42%), Gaps = 49/492 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLR+ D+  L AA H ++  +I ++I  PE W+Q  ++ R  HF +  L+ + K
Sbjct: 7   IVWFKRDLRVQDHAPLLAASH-TNRPIIPLYIIEPECWQQPDVARRHWHFTHDCLVDLNK 65

Query: 71  SLSQKG------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
            L+  G      +       +        +D +  ++      Y+R   +          
Sbjct: 66  DLTDLGQPLIIAVGVAVDVIAQLQKKFGAVDLFAHEETGNAWTYDRDVAVAG-------- 117

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183
                  +C   +      P + +   L+   V++  R   + + +      L P P   
Sbjct: 118 -------LCSDLEIPFHEYPSNGVVRRLKSRDVWSRIRNERMADRISPKPTKLVPFPKC- 169

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA----LHILRKFCKEKVYYYVEQRDIPAI 239
            + P+ P + P F      A+      G ++A    L     +  E+  Y++   D   +
Sbjct: 170 ASAPLPPKHDPIFG----AALTGNVQKGGRDAAVADLQSFLTYRAERYLYHISAPDASEM 225

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWREFYRHLM 295
              S+LS +L++G LS R+    + +    L    K        ++ + + WR  +   +
Sbjct: 226 Y-CSRLSAHLALGSLSVREVVQSIAKRRAQLSPMEKKTFGRNLTAFGSRVAWRCHFVQKI 284

Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
              PS+  C   P      + E N D++  QAW  G TG+P IDA MR L + GW+  R+
Sbjct: 285 EDQPSIETCCMHPAFEGIREDEHN-DAYF-QAWAAGQTGYPFIDACMRNLVSEGWITFRM 342

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R +  SF    L +DWRI  ++      D +   +    Q    +G   +   R++NP  
Sbjct: 343 RAMLVSFASYHLWLDWRITGKHLARVFTDYEPGIHYS--QLQMQSGVTGINTMRVYNPIK 400

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIVDHKKAC 467
           Q +  DP G FIR W+PEL  VP ++IH P  W    LD  +  L  +YP PI+DH+ A 
Sbjct: 401 QSQEHDPTGKFIRKWVPELRAVPNEFIHEPWKWKGTLLDDVEFELGRDYPEPILDHEVAA 460

Query: 468 HHTLNQYYAAKK 479
                +    +K
Sbjct: 461 RQAKKRISDVRK 472


>gi|195107460|ref|XP_001998330.1| GI23904 [Drosophila mojavensis]
 gi|193914924|gb|EDW13791.1| GI23904 [Drosophila mojavensis]
          Length = 539

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 131/507 (25%), Positives = 223/507 (43%), Gaps = 66/507 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65
             +++W R+ LR+ DN A+ AA  N D  V  I +FI   E      +   +  F+  SL
Sbjct: 5   GANVIWFRHGLRLHDNPAMLAALSNKDQGVALIPIFIFDGESAGTKNVGYNRMRFLLDSL 64

Query: 66  LQVQKSLSQK-----GIVFQYHQCSNFDDSIE---WLDSYCLQQRVTKLFYNRQYEINEV 117
             + + L +      G++    Q  +    +     L   C++Q    ++  R   +  +
Sbjct: 65  QDIDRQLQEATEGRGGLLICEGQPVHIFRRLHEHVGLHKICVEQDCEPIWNERDEAVKSL 124

Query: 118 RRDKLLE--KRLQHRVICKSFD-DSVLLPPGSILNHALQMYK-----VYTPFRKALIQNL 169
            R+  +E  +++ H +    +D  +V+   G I     QM+      +  P R     N 
Sbjct: 125 CRELGIEYVEKVSHTL----WDPRTVIDTNGGIAPLTYQMFLHTVQIIGLPPRPVRDPNF 180

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKE 225
                  L        G    +  P  F+     +  +  I    GE  AL +L +  K 
Sbjct: 181 EGVKFVQLSPELRHDIGCFEMTPTPEHFNVYSDNMGYLAKINWVGGETQALLLLGERLKV 240

Query: 226 KVY-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----- 274
           + +     YY+  + +P I  T + +S +L  G LS R+ +  + + F ++ ++      
Sbjct: 241 EQHAFERGYYLPNQAMPNILDTPKSMSAHLRFGCLSVRRFYWCMHDLFKNVQLRACVRGV 300

Query: 275 -KSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQA 325
             SG      +LIWRE++  +    P         +C+    IPW +      D+  LQ 
Sbjct: 301 QMSGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLS---IPWAKP-----DAEQLQR 352

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384
           W+ G TGFP+ID+AMRQL   GW+H+ LR   A+FL +  L  +W  G ++F+  LLD D
Sbjct: 353 WRLGQTGFPLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYLLDAD 412

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
            +   G W W +S+  + +    +   P    KR DP G +I+ ++PEL +VP +YIH P
Sbjct: 413 WSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPNGQYIKQYVPELQHVPKEYIHEP 472

Query: 444 HSWLDKND--------LSLNYPLPIVD 462
             WL   +        + ++YP  I+D
Sbjct: 473 --WLMSAEEQKRYECLIGVHYPDRIID 497


>gi|163840005|ref|YP_001624410.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
 gi|162953481|gb|ABY22996.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
          Length = 147

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 5/138 (3%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQL   GWMHNR+RM+ ASFLVK+LL+DWR GE++F   L+D DLASN   WQW A +G
Sbjct: 1   MRQLWQTGWMHNRVRMVVASFLVKNLLIDWREGEKWFWDTLVDADLASNPANWQWVAGSG 60

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---NDLSLNY 456
            D+ PYFR+FNP  Q K+FD  G ++R ++PEL  + ++ IH P  W  K   +D  L Y
Sbjct: 61  ADAAPYFRVFNPVTQSKKFDSDGDYLRKFVPELAALGSKEIHEP--WKIKPTLDDKPLEY 118

Query: 457 PLPIVDHKKACHHTLNQY 474
           P P+VD   +    L  Y
Sbjct: 119 PDPLVDLGVSRERALEAY 136


>gi|77964006|gb|ABB13344.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
          Length = 462

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 133/238 (55%), Gaps = 17/238 (7%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHL 294
           TS LSPYL  G LS R+ ++ ++   +  L+    G  +       +L  +  RE+ R+L
Sbjct: 2   TSLLSPYLHFGELSVRKVFHLVR---MKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYL 58

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R
Sbjct: 59  CFNHP-CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIR 117

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           ++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  DS     I NP ++
Sbjct: 118 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLE 177

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV+   A
Sbjct: 178 GYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTA 235


>gi|86131286|ref|ZP_01049885.1| cryptochrome, DASH family [Dokdonia donghaensis MED134]
 gi|85818697|gb|EAQ39857.1| cryptochrome, DASH family [Dokdonia donghaensis MED134]
          Length = 432

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 206/446 (46%), Gaps = 38/446 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-----FI 61
           M   LVW RN+LR+ DN +L AA   +  +V+ V+   P  + +     +++      F+
Sbjct: 1   MDTALVWFRNNLRVQDNASLTAAIA-TGKRVVGVYYFDPRHYEEGDFGFKKTEKYRAKFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             ++  ++ +L ++ I    +         E + S     +VT L   +++   EV+   
Sbjct: 60  IETIENLKANLDKRNITLLVYNLK----PEEHITSVVKSYKVTSLHSQKEWTAEEVKVTN 115

Query: 122 LLEK---RLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            +E+    + H ++   F    L  P  I  N   ++ K++T FRK   +   ++D+R +
Sbjct: 116 AVERAIPEVSHELVYDQF----LFHPDDIPFNTITEVPKIFTQFRKKCEK---ESDVRPI 168

Query: 178 -----PVPAIRLTGPVTP-SNIPRF-FDYPFQAIDPMFP--IGEQNALHILRKF--CKEK 226
                 +P   +   VTP S +     D   +     FP   GE  A   L  +    +K
Sbjct: 169 FKELTALPQENILTTVTPISTLEDLGLDTFVKDHRTAFPWEGGEDAAWARLNDYFWTTQK 228

Query: 227 VYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           + YY + R+    +G +S+LS +L+ G +S RQ + ++K    +  +K     +  + EL
Sbjct: 229 LAYYKKTRNGLIGEGYSSKLSAWLANGSISARQIYWKVKR--FEKEVKKNQDTYWLIFEL 286

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           IWR++++++   +         I   ++ +W  ++   + W  G T +  ++A M +L  
Sbjct: 287 IWRDYFKYVSLKHGDNIFKIGGIL-NKEYDWKHNNKAQREWINGNTKYDFVNANMIELKE 345

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GWM NR R   ASF  K+   DWR+G  YF S L+D D+ SN G W + A  GND  P 
Sbjct: 346 TGWMSNRGRQNVASFWAKEQEQDWRVGAAYFESILIDYDVHSNWGNWMYNAGVGND--PR 403

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPE 431
            R FN   Q   +D  G ++R W  E
Sbjct: 404 DRKFNIKRQQDMYDGSGKYVRLWTQE 429


>gi|195055524|ref|XP_001994667.1| GH17366 [Drosophila grimshawi]
 gi|193892430|gb|EDV91296.1| GH17366 [Drosophila grimshawi]
          Length = 539

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 133/509 (26%), Positives = 221/509 (43%), Gaps = 64/509 (12%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIY 62
           T    +++W R+ LR+ DN AL +A  + D  +  I +FI   E      +   +  F+ 
Sbjct: 2   TLRGANVIWFRHGLRLHDNPALLSALADKDYGIALIPIFIFDGESAGTKSVGYNRMRFLL 61

Query: 63  ASLLQVQKSL-----SQKGIVFQYHQCSN----FDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            SL  + K L      Q G++    Q ++      D +  L   C++     ++  R   
Sbjct: 62  DSLDDIDKQLKEVSDGQGGLLICEGQPTDIFRRLHDQVR-LHKICVELDCEPIWNERDEA 120

Query: 114 INEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSILNHALQMYK-----VYTPFRKALI 166
           IN + R+  +E      ++  +  D  +V+   G I     QM+      +  P R    
Sbjct: 121 INNLCRELGIEYV---EMVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVHIIGLPPRPVHD 177

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKF 222
                     L     R  G +  +  P  F+     +  +  I    GE  AL +L + 
Sbjct: 178 PQFDGVGFVQLSAEMRREIGCLEKTPSPEHFNVYSDNMGTLAKINWVGGESQALLLLGER 237

Query: 223 CK------EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-- 274
            K      E+ YY   Q     +     +S +L  G LS R+ +  + + F ++ ++   
Sbjct: 238 LKVEQHAFERGYYLPNQALPNIVDKPKSMSAHLRFGCLSVRRFYWNVHDLFKNVQLRACI 297

Query: 275 -----KSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSH 321
                 SGA     +LIWRE++  +    P         +C+    IPW +    N+D  
Sbjct: 298 RGVQMTSGAHI-TGQLIWREYFYTMSVNNPQYDRMEGNEICLN---IPWAKP---NEDH- 349

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380
            LQ W+ G TGFP+IDAAMRQL   GW+H+ LR   A+FL +  L  +W  G ++F+  L
Sbjct: 350 -LQRWRLGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYL 408

Query: 381 LDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           LD D +   G W W +S+  +  +   ++  P    KRFDP G +I+ ++PEL NV  ++
Sbjct: 409 LDADWSVCAGNWMWVSSSAFERLLDTSQVSCPVALAKRFDPNGVYIKQYVPELRNVTKEF 468

Query: 440 IHAP------HSWLDKNDLSLNYPLPIVD 462
           IH P         + +  + ++YP  I+D
Sbjct: 469 IHEPWRMTAEQQEIAECLIGVHYPERIID 497


>gi|159487721|ref|XP_001701871.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
 gi|158281090|gb|EDP06846.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
          Length = 469

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 136/498 (27%), Positives = 216/498 (43%), Gaps = 70/498 (14%)

Query: 3   ATTAMSVHLV-WLRNDLRITDNKALYAACH----NSDAKVIAVFIATPE-----QWRQHG 52
           AT      LV W RNDLR+ DN  ++ A         ++V+ V++  P       W    
Sbjct: 2   ATAGGGQRLVLWFRNDLRLHDNYIVHEAAQRVKRGEASEVLPVYVYDPRFFAATPWGALK 61

Query: 53  ISARQSHFIYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110
             A ++ FI   +  +++ L   G  +V    Q          L +         L    
Sbjct: 62  TGAHRAKFIQECVADLRQRLQGLGSDLVVAVGQPEQL------LPALLEGGGAAPLVLTA 115

Query: 111 QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH--ALQMYKVYTPFRKALIQN 168
           +    EV  ++        R I K     +L   G  + H   L +  V+TPF++ + + 
Sbjct: 116 E----EVTSEEAAVDVAVARAI-KPAGGKLLRYWGHTMYHYDDLDLPDVFTPFKEKVEK- 169

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------YPFQAIDPMFPIGEQNALHIL 219
             +A L   P P +  T     +     ++         +P   +D  F  GE  AL  L
Sbjct: 170 --RAALPLPPAPRLGATAAAALAAPLPGWEQLPPAPPVTHPKAVLD--FKGGETAALARL 225

Query: 220 RKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
           + +  +      Y+  +  +     +++ +P+L+ G +SPR+ ++ +++ +       KS
Sbjct: 226 KYYLWDSDLLSTYFDTRNGMLGGDYSTKFAPWLAQGCISPRKIFHEIRK-YESQRFSNKS 284

Query: 277 GAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
             +  + ELIWR+F+R          F+ +   G P +       WN D  L   W++G 
Sbjct: 285 -TYWVIFELIWRDFFRFFALKHGNRIFFETGTSGLPLV-------WNPDPELWARWREGR 336

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG P++DA MR+L   G+M NR R   AS+LV DL VDWR G +YF   LLD D+ SN G
Sbjct: 337 TGLPLVDANMRELAATGFMSNRGRQNVASYLVLDLGVDWRRGADYFEEVLLDYDVTSNWG 396

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
            W  AA      V +F I     Q K +DP G +++ W PEL NVP   +H P  WL   
Sbjct: 397 NWVAAAGLTGGRVNHFNIAK---QSKDYDPTGEYVKTWCPELKNVPVTKVHEP--WLMSK 451

Query: 451 D--------LSLNYPLPI 460
           +        + ++YP PI
Sbjct: 452 EEQERSGCRIGVDYPNPI 469


>gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae]
 gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae]
          Length = 539

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 146/533 (27%), Positives = 222/533 (41%), Gaps = 88/533 (16%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKAL---YAACHNSDAK--VIAVFIATPE--QWRQHGI 53
           M A  A  VH  W R  LR+ DN AL   +   + +  K  V  +FI  P    W Q  +
Sbjct: 1   MDAKHATLVH--WFRKGLRVHDNPALSQIFKVANTAPGKYFVRPIFILDPGILDWMQ--V 56

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A +  F+  +L  + + L + G      +    +       S+    RV  L +    E
Sbjct: 57  GANRWRFLQQTLHDLDQQLQKLGSRLFVVRGKPAEVFPRIFKSW----RVELLTFETDIE 112

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
              + RD  ++K      + KS  D V      +  H    + +Y P      + ++  +
Sbjct: 113 PYSLARDSAVQK------LAKS--DGV-----KVETHC--SHTIYNP------ELVIAKN 151

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPF-------------------------------- 201
           L   P+   +  G V    +P   D P                                 
Sbjct: 152 LGKAPITYQKFLGIVEKLKLPTVLDLPEKLKEKVQPPKDDIEEKDSEAYDCPTMEQLVKR 211

Query: 202 -QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLS 255
            + + P+ FP GE  AL  + +  K++++    ++   A       T+ LSPYL  G LS
Sbjct: 212 PEDLGPLKFPGGETEALRRMEESLKDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 271

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEK 313
            R    RLKE  +    K      S + +++WREFY  + A  P+    +G  +     +
Sbjct: 272 SRLFHQRLKE-ILKRQTKHSQPPVSLIGQMMWREFYYTVAAAEPNFDRMLGNVYC---LQ 327

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIG 372
           I W +    L+AW  G TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G
Sbjct: 328 IPWEEHPDHLKAWTYGQTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEG 387

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           +  F   LLD D A N G W W +++      YFR+++P   GK+ DPQG +IR ++PEL
Sbjct: 388 QRVFEQLLLDQDWALNAGNWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGNYIRKYVPEL 446

Query: 433 NNVPTQYIHAP--HSWLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
              P   I+ P   S  D+      L  +YP  IV H+      + +  AA K
Sbjct: 447 AKYPAGCIYEPWKASLSDQRAYGCVLGTDYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni]
 gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni]
          Length = 546

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 147/505 (29%), Positives = 215/505 (42%), Gaps = 61/505 (12%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPE--QWRQHGI 53
           M+A T  ++ + W R  LR+ DN AL      + A      V  +FI  P    W Q  +
Sbjct: 1   MEAKTKATL-IHWFRKGLRVHDNPALMQIFTTAQAAPKKFYVRPIFILDPGILDWMQ--V 57

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A +  F+  +L  + K L Q        +       IE          V  L +    E
Sbjct: 58  GANRWRFLQQTLDDLDKQLRQLNSRLYVVR----GKPIEVFPRLFKSWNVELLTFESDIE 113

Query: 114 INEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
                RD  ++K  +   I  ++     +  P  ++   L    +      AL++ L  A
Sbjct: 114 PYAQTRDAAVQKIAKAAGIKVETHCSHTIYNPELVIAKNLGKAPITYQKFLALVEKLKLA 173

Query: 173 DLRSLPVPAIRLTGPVT---PSNIPRFFDYPFQA--------IDP-MFPIGEQNALHILR 220
            +   P     LT P          + +D P Q         + P +FP GE   L  + 
Sbjct: 174 KVLDKPEKLDALTQPSRDELEQENDKVYDCPSQEQLVKKPNELGPNIFPGGETEGLRRME 233

Query: 221 KFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PK 275
               ++++    ++   A       T+ LSPYL  G LS R  + RLKE    +L K PK
Sbjct: 234 DSLNDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSSRLFYQRLKE----ILAKHPK 289

Query: 276 SGA--FSWLNELIWREFYRHLMAFYPSV--CMGKPF---IPWTEKIEWNKDSHLLQAWKQ 328
                 S + +++WREFY  + A  P+    +G  +   IPW E  E       L+AW  
Sbjct: 290 HSQPPVSLVGQVLWREFYYTVAAAEPNFDRMLGNVYCLQIPWQEHPE------HLEAWTY 343

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387
           G TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A 
Sbjct: 344 GRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWAL 403

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N G W W +++      YFR+++P   GK+ DPQG +IR + PEL N P + I+ P  WL
Sbjct: 404 NAGNWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGNYIRKYCPELANYPNKQIYEP--WL 460

Query: 448 DKND--------LSLNYPLPIVDHK 464
                       L  +YP  IV H+
Sbjct: 461 ATLQAQREYGCVLGEDYPHRIVKHE 485


>gi|123967930|ref|YP_001008788.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. AS9601]
 gi|123198040|gb|ABM69681.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. AS9601]
          Length = 498

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 213/468 (45%), Gaps = 49/468 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W + DLRI DN+AL  A  ++D  ++ ++I   + W Q+  S RQ  F   SL+ +
Sbjct: 4   INILWFKKDLRIFDNEALCEAIKDND--ILPIYIIELDIWSQNTHSDRQWQFCKESLIDL 61

Query: 69  QKSLSQKG--IVFQYHQCSNFDDSI----EWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           + +L++ G  ++ +     N  D+I    +    Y  Q+    L Y R  ++ E    K 
Sbjct: 62  RNALAEIGQPLIIRTGNVINIFDAISSKFKIKGIYSHQETGDWLTYKRDQKVKEWAFSK- 120

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
                   +I K F         S+    L        ++K   +NL++A LR   + +I
Sbjct: 121 -------NIIWKEF------LQFSVFRGNLDRNNWSKKWQKNSEKNLLKAPLR---INSI 164

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240
                  PS+    F +  +        G +  L  ++ F   K+  Y +    P  +  
Sbjct: 165 NFNTGEIPSD--EIFSFKKETCPGRMQGGRKKGLERMQYFFSNKLDSYSKDISSPEKSFD 222

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             ++LSPY+  G +S       LKE F    I   + +    + L W   +   +   P 
Sbjct: 223 SCTRLSPYICWGCIS-------LKEIFQKANISKNNNSRMLKSRLTWHCHFIQKLESEPE 275

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +   + + P+ + I   K++ LL +W  G TGFP IDA MR LN  GW++ R+R +  SF
Sbjct: 276 LEF-REYHPFFKNIR-EKNNELLYSWSSGNTGFPFIDACMRSLNFHGWINFRMRAMLMSF 333

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGKRFD 419
              +L + W+       ++ +D +   +   W Q    +G  S+   RI+NP  QGK  D
Sbjct: 334 ASYNLWLPWQDSGSELANKFVDYEPGIH---WNQCQMQSGTTSINTNRIYNPIKQGKDHD 390

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL----DKNDLS-LNYPLPIVD 462
           PQG FI+ WLPEL ++   +IH P  WL    +K +   +NY  PI+D
Sbjct: 391 PQGKFIKKWLPELKDLSLNFIHEP--WLLSRFNKEEYEQINYIRPIID 436


>gi|297721439|ref|NP_001173082.1| Os02g0625000 [Oryza sativa Japonica Group]
 gi|255671101|dbj|BAH91811.1| Os02g0625000 [Oryza sativa Japonica Group]
          Length = 334

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/150 (44%), Positives = 96/150 (64%), Gaps = 6/150 (4%)

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D    ++W+QG TG+P++DA MR+L   GW HNR+R+I +SF VK LL+ W  G +YF  
Sbjct: 25  DEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFWD 84

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD DL S+  GWQ+ + +  D     R+ NP +QG+++DP G ++R W+PEL  +PT+
Sbjct: 85  VLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPTE 144

Query: 439 YIH----APHSWLDKN--DLSLNYPLPIVD 462
           +IH    AP   L+    +L  NYP PIVD
Sbjct: 145 WIHHPWDAPSCILEVAGVELGFNYPKPIVD 174


>gi|77963986|gb|ABB13334.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
 gi|77963988|gb|ABB13335.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
          Length = 350

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 6/153 (3%)

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I +SF VK LL+ W  G +Y
Sbjct: 15  WRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFAVKFLLIPWTWGMKY 74

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           F   LLD D+ S+  GWQ+ +    D     R+ NP +QG+++DP G ++R W+PEL  +
Sbjct: 75  FWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIPELARM 134

Query: 436 PTQYIH----APHSWLD--KNDLSLNYPLPIVD 462
           P ++IH    AP S L+    +L  NYP+PIV+
Sbjct: 135 PGEWIHHPWDAPSSILEVAGVELGFNYPMPIVE 167


>gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
 gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
          Length = 433

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 198/447 (44%), Gaps = 50/447 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-----TPEQWRQHGISAR----QSHFI 61
           L+W R  LR+ DN +L AACH S   V  VF+       P+       SAR    +  F+
Sbjct: 3   LLWFRKGLRLHDNPSLEAACHGS-RNVYPVFVLDPWFLAPDPSAPSPGSARVGINRIQFL 61

Query: 62  YASLLQVQKSLSQKGI-VFQYHQCSNFDDSIEW-LDSYCLQQRVTKLFYNRQYEINEVRR 119
             SL  + ++LS +G  +   H      + I+W +   C +        +R  +I E  +
Sbjct: 62  LESLQDLDRNLSSRGSKLLLVH-----GNPIQWRIRKLCFEFDTEPYALDRDAKIKEHAK 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLP------PGSILNHALQMYKVYTPFRKALIQNLVQAD 173
           DK +E  L   V    F+  +L+       P +  +    +     P            D
Sbjct: 117 DKGIE--LHCSVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPATKPIGNGPSSIPPTGD 174

Query: 174 LRSL---PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEK-VY 228
           L  +   PVP +   G         + D+  +   P F  GE   L  L      EK V 
Sbjct: 175 LHGIKVVPVPTLEELG---------YTDF-HEDFSP-FRGGETVGLTRLEDSLANEKWVC 223

Query: 229 YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
            + + +  P       T+ LSPYL  G LS R  ++R+KE +        S   S   +L
Sbjct: 224 EFEKPKGDPTAFIKPATTVLSPYLKFGCLSSRLFYSRVKEVY-SRAKSFTSPPVSLEAQL 282

Query: 286 IWREFYRHLMAFYPSVCMGKPFI-PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           +WREF+    A Y +    K    P  ++I W  D  LL AW+ G TG+P IDAAM QL 
Sbjct: 283 LWREFF--YTAAYATANFDKMVGNPTCKQIPWKDDDELLSAWRDGRTGYPWIDAAMTQLR 340

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GWMH+  R   A FL + D+ V W  G + F   L+D D + NNG W W +++   + 
Sbjct: 341 KWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAFFNQ 400

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            Y RI++P    K++D QG +I+H+LP
Sbjct: 401 -YHRIYSPITFAKKYDRQGNYIKHFLP 426


>gi|77963990|gb|ABB13336.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
          Length = 350

 Score =  140 bits (354), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 6/153 (3%)

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I +SF VK LL+ W  G +Y
Sbjct: 15  WRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFAVKFLLIPWTWGMKY 74

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           F   LLD D+ S+  GWQ+ +    D     R+ NP +QG+++DP G ++R W+PEL  +
Sbjct: 75  FWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIPELARM 134

Query: 436 PTQYIH----APHSWLD--KNDLSLNYPLPIVD 462
           P ++IH    AP S L+    +L  NYP+PIV+
Sbjct: 135 PGEWIHHPWDAPSSILEVAGVELGFNYPMPIVE 167


>gi|115738187|ref|XP_785873.2| PREDICTED: similar to Cry1-A protein [Strongylocentrotus
           purpuratus]
 gi|115977051|ref|XP_001194752.1| PREDICTED: similar to Cry1-A protein [Strongylocentrotus
           purpuratus]
          Length = 516

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 143/301 (47%), Gaps = 27/301 (8%)

Query: 192 NIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPA--IQGTSQ 244
            IP   +  F   D   PM+  GE  A   L +  + K +   +   R  PA  +   + 
Sbjct: 206 GIPTLEELGFDPEDVPPPMWIGGETEAKQRLDRHLERKAWVANFERPRMSPASLMASPAG 265

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LSPR  + +L E +  +  K  +   S   +L+WREF      F+   C  
Sbjct: 266 LSPYLRFGCLSPRTFYWKLTELYQKVR-KTTNTPLSLHGQLLWREF------FFTVACNN 318

Query: 305 KPFI-----PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           + F      P   +I W+K++ LL  W  G TG+P IDA M QL   GW+H   R   A 
Sbjct: 319 RQFDHMVDNPICIQIPWDKNTALLNKWANGETGYPWIDAIMTQLRLEGWIHPLARHAVAC 378

Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P   G+R 
Sbjct: 379 FLTRGDLWISWEEGMKVFDEYLLDADWSVNAGNWIW-LSCSSFYQQFFHCYCPVKFGRRT 437

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLN 472
           DP G ++R +LP L N P++YI  P +         K  +  +YPLPIVDH +A H  + 
Sbjct: 438 DPNGDYVRKYLPFLKNFPSKYIFEPWTAPIEVQEKAKCIIGKDYPLPIVDHAEASHRNIE 497

Query: 473 Q 473
           +
Sbjct: 498 R 498


>gi|195569723|ref|XP_002102858.1| GD19278 [Drosophila simulans]
 gi|194198785|gb|EDX12361.1| GD19278 [Drosophila simulans]
          Length = 542

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 130/478 (27%), Positives = 213/478 (44%), Gaps = 52/478 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65
             +++W R+ LR+ DN AL AA  + D  +  I VFI   E      +   +  F+  SL
Sbjct: 5   GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64

Query: 66  L----QVQKSLSQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEV 117
                Q+Q +   +G  +VF+      F    E   L   C++Q    ++  R   I  +
Sbjct: 65  QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDENIRSL 124

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-GSILNHALQMYK-----VYTPFRKALIQNLVQ 171
            R+  L      +V    +D  +++   G I     QM+      +  P R      L  
Sbjct: 125 CRE--LSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLDD 182

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKV 227
           A    L     R         +P  F+     +  +  I    GE  AL +L +  K + 
Sbjct: 183 ATFVELEPEFCRSLKLFEQLPMPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQ 242

Query: 228 Y-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------K 275
           +     +Y+  + +P I  + + +S +L  G LS R+ +  + + F ++ ++        
Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302

Query: 276 SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327
           +G      +LIWRE++  +    P+        +C+    IPW +    N+D  LLQ W+
Sbjct: 303 TGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLS---IPWAKP---NED--LLQRWR 354

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386
            G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +
Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWS 414

Query: 387 SNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
              G W W +S+  + +    +   P    KR DP GT+I+ ++PEL NVP +Y+H P
Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEYVHEP 472


>gi|116072905|ref|ZP_01470170.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
 gi|116064431|gb|EAU70192.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
          Length = 496

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 212/485 (43%), Gaps = 51/485 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ +VW + DLR  D++ L+ A  +    V+ +++  PE W+Q   S+RQ  F   SL+ 
Sbjct: 3   ALQIVWFKRDLRTVDHRPLFEA--SKCGPVLPLYVVEPELWQQPDSSSRQWLFCRESLID 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK- 125
           +Q++L++ G      +     D  + L+    Q  +  L+ + +   +   +RDK +   
Sbjct: 61  LQRALAEFGQPLVVRR----GDVADVLERARRQFGIDALWSHEETGNDWTYQRDKRVAAW 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             QH +            P   +   L+    +    +  +   +   L +LP    RL 
Sbjct: 117 AKQHGIPWTEI-------PQFGVTRRLKSRNGWAKRWETQMAEPITQPLTALP----RLA 165

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYVEQRDIP-- 237
             + P  IP   D P  ++ P  P       G +      R F  ++V  Y      P  
Sbjct: 166 D-LDPGAIP---DLPHGSMAPD-PCPHRQLGGRRQGELEFRDFLNQRVERYCSSISSPNK 220

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A  G S+LS YL+ G LS       ++E           G  S+ + L W   +   +  
Sbjct: 221 AFTGCSRLSAYLTWGCLS-------MREVLQQSRTMQGRGVNSFGSRLHWHCHFIQKLED 273

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            PS+   + F P    I  +   HL QAW +G TG P +DA MR L   GW++ R+R + 
Sbjct: 274 EPSIEF-QDFHPLMRGIRDSNQDHL-QAWAEGRTGVPFVDACMRALRAHGWINFRMRAML 331

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGK 416
            SF   +L + WR    +   Q +D +   +   W Q    +G+ S+   RI+NP  QG+
Sbjct: 332 MSFASYNLWLPWRQSGLHLARQFVDYEPGIH---WSQCQMQSGSTSINTIRIYNPIKQGR 388

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             DP+G FIRHW PEL  VP  YIH P  W    +L    P PIVD   +     ++ +A
Sbjct: 389 DHDPEGRFIRHWCPELREVPAIYIHEP--W----ELGGGMPAPIVDVTTSMQAAKDRIWA 442

Query: 477 AKKQS 481
            ++ +
Sbjct: 443 VRRSA 447


>gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus]
          Length = 542

 Score =  140 bits (353), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 152/523 (29%), Positives = 229/523 (43%), Gaps = 81/523 (15%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHFIY 62
           S+H  W R  LR+ DN+AL  AC N  A +  +F+     A+PE          ++ F+ 
Sbjct: 9   SIH--WFRKGLRLHDNRALLEAC-NGTASLYPLFVLDSDPASPES----RAGPLRTAFLL 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + + L  KG      +        E L     +  V KL +    E     RD+ 
Sbjct: 62  ESLQDLDEQLRAKGSRLFVVRGK----PEEVLPQLFEEWNVKKLTFEADSEPRSRARDRE 117

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----SLP 178
           +        + K     VL+   S L + LQ Y +    ++        A L+    + P
Sbjct: 118 VGS------LAKEAGVQVLIRGTSTLRN-LQNYHMLMGKKQGTYLKTYGAFLKLHDNAGP 170

Query: 179 VP--AIRLTGPV-----TPSN-------IPRFFDYPFQAIDPM-----FPIGEQNALHIL 219
           VP  A  ++G +     +P +       IP   D     ++P+     F  GE+ AL  L
Sbjct: 171 VPDCAPDISGDLPAPGASPDDAEYDRFSIPSLSDL---GVEPLAKALKFRGGEREALARL 227

Query: 220 RKFCKEK--VYYYVEQRDIP-AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
            +    +  +  + + +  P +I+  T+ LS Y+S G LS R+ W+ L + +       K
Sbjct: 228 ERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTK-----K 282

Query: 276 SGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
            G+    S   +L+W+EF        PS    +G P I    +I W+KD   L AWK+  
Sbjct: 283 GGSKPPVSLKGQLLWKEFNYFSGYSIPSFDKMVGNPVI---RQIPWDKDEEKLMAWKEAR 339

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389
           TGFP IDAAM QL   GW+H+  R   A FL + DL   W  G   F   LLD D + NN
Sbjct: 340 TGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINN 399

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
             WQW + +      YFR ++P   GK+ D  G +I+ +LP L   P++YI+ P  W   
Sbjct: 400 FNWQWLSCSAF-FYQYFRCYSPIAFGKKTDQNGDYIKKYLPALRKFPSKYIYEP--WTAP 456

Query: 450 ND--------LSLNYPLPIVDH---KKACHHTLNQYYAAKKQS 481
                     +  +YP PIVDH    KA    +N  Y A +++
Sbjct: 457 LQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMNDAYDAHQEA 499


>gi|309779656|ref|ZP_07674415.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA]
 gi|308921597|gb|EFP67235.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA]
          Length = 476

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 125/448 (27%), Positives = 205/448 (45%), Gaps = 39/448 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHGISARQS 58
           TA++  L W R+DLR+ D  AL AAC    + ++ V+        TP  + + G+  R  
Sbjct: 42  TALNTVLFWFRSDLRLHDQPALRAACETGASHLVPVYCHADYEAQTPWGFARVGVHRRA- 100

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
             + A+L  + + L+  G       C      +  L        V        YE  EV 
Sbjct: 101 -VLAAALRDLARQLADLGTRL-VECCGPPGKVLPALARAVGASTVVCEDIAAPYEQAEV- 157

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             +L    LQ + + +S     L+ P  +      +  V+T FR+AL +  +     S P
Sbjct: 158 -AELRSAGLQVQTVWQS----SLIDPLCLPWPVQSLPAVFTTFRQALERARIAP---STP 209

Query: 179 V-PAIRL----TGPVTPSNI--PRFFDYPFQAID---------PMFPIGEQNALHILRKF 222
           + P  RL    +G + P  +  P +      + D         P F  GE   L  L ++
Sbjct: 210 LSPPTRLPPWPSGVIIPPGLRAPAYVANQTLSTDSRASFPYGTPEFDGGETAGLRHLAQY 269

Query: 223 CKEKV-YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            + ++ + Y   R+ +  +  +S+ SP+L+ G LSPR+  + L ++F     +     + 
Sbjct: 270 LERQLPHTYKRTRNALAGVDFSSKWSPWLATGALSPRRVISEL-QQFEQSHGQSDGSYWL 328

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           W  EL+WR+++R L   + +       +    +     D    + W++  TG P++DAAM
Sbjct: 329 WF-ELLWRDYFRFLHLQHGARLYRARGLANEVRHAERPDVQGFERWRRASTGEPLVDAAM 387

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L T G++ NRLR + AS+LV +L  DWR G  +F SQL+D D+ SN G W + A  G 
Sbjct: 388 RELETTGYLSNRLRQVVASYLVHELGGDWRAGAAWFESQLVDYDVYSNQGNWLYIAGRGT 447

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           D     R FN   Q   +DP G+++R W
Sbjct: 448 DPRG-GRRFNVRKQAAEYDPDGSYLRLW 474


>gi|153831636|ref|ZP_01984303.1| cryptochrome dash [Vibrio harveyi HY01]
 gi|148872146|gb|EDL70963.1| cryptochrome dash [Vibrio harveyi HY01]
          Length = 450

 Score =  140 bits (352), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 134/444 (30%), Positives = 199/444 (44%), Gaps = 53/444 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHF 60
           ++ L W  NDLR+ DN  L  A    DA +       ++ F+A   Q    G + +Q  F
Sbjct: 4   TIGLYWFTNDLRMHDNPLLTRASEEVDALICVYCYPKLSPFLAHFAQESMFGSAKQQ--F 61

Query: 61  IYASLLQVQKSLS---QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           +  SL  +  SL+   Q+  V   H       ++E L        VT L+ +      E 
Sbjct: 62  LDESLHCLNLSLNAFDQRLQVVDLHPYQAIKHAVEKLG-------VTHLYCDAFSGSEEQ 114

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRS 176
                + +  +H  IC+    S+       L  AL+ +   +T FRK       +A+  S
Sbjct: 115 DVVDHIRQESEHLTICQQEVRSLFTVED--LPFALEDLPDTFTKFRK-------KAEKVS 165

Query: 177 LPVPAIRLTG-PVTPSNIPRFFDYPFQAIDP-MFPIGEQNAL-HILRKFCKEKVYYYVEQ 233
           L  P + +T  P+TPS +        + + P +F  GEQ  L H  R F       Y + 
Sbjct: 166 LAEPFVTVTALPLTPSGLALPTLRLIRDVKPCLFTGGEQAGLEHARRYFSSTLASEYKQT 225

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY- 291
           R+ +  +  +++ SP+L+ G LSP+  +  LK    + L       +    EL+WRE++ 
Sbjct: 226 RNGLDGMDYSTKFSPWLANGCLSPKTIYAMLKR--YERLKGANESTYWIYFELLWREYFY 283

Query: 292 -------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
                  R L  F   +    P   +         +H  Q WK+G T FPI++A M QLN
Sbjct: 284 WYARRHKRQLFRF-GGIQNQAPLTSFY--------AHRFQQWKKGETPFPIVNACMHQLN 334

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+M NR R + AS LV +L +DWR G  YF SQL+D D+ASN G WQ+ A  G D   
Sbjct: 335 ETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG 394

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428
             R FN   Q + +DP   FI  W
Sbjct: 395 S-RQFNLEKQTEMYDPHMEFIDRW 417


>gi|78212258|ref|YP_381037.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605]
 gi|78196717|gb|ABB34482.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605]
          Length = 493

 Score =  140 bits (352), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 197/467 (42%), Gaps = 53/467 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ +VW + DLRI D++ L AA       V+ +++  PE WRQ   S RQ  F   SLL+
Sbjct: 3   ALQIVWFKRDLRIVDHQPLAAAVER--GLVLPLYVVEPELWRQPDASERQWMFCRESLLE 60

Query: 68  VQKSLSQKG--------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VR 118
           ++++L+ +G         V Q  + +     I+ L S+  ++      Y R   +    R
Sbjct: 61  LRQALADRGQPLVVRAGDVVQVLERARRQFGIDGLWSH--EETGNGWTYQRDKRVGAWAR 118

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           R  +    L    + +          G      +QM +  TP   AL Q L   D   +P
Sbjct: 119 RHGIAWMELPQFGVTRRMHSR----NGWAKRWEVQMTEPITPVPAAL-QALDGIDHGVIP 173

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP- 237
                      P +       P + I      G    L  L  F + +   Y      P 
Sbjct: 174 E---------RPCSELLLDACPQRQIG-----GRSTGLEELNDFLQHRAQRYQRSMSSPN 219

Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            A  G S+LS YL+ G LS       ++E           G  S+ + L W   +   + 
Sbjct: 220 TAFTGCSRLSTYLTWGCLS-------MREVLQTSRTHSGRGVSSFESRLHWHCHFIQKLE 272

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P++     F P+   I    D+  L AW +G TG P +DA MR L   GW++ R+R +
Sbjct: 273 DQPAIEFSD-FHPFMRGIR-AADAERLTAWSEGRTGVPFVDACMRALRAHGWINFRMRAM 330

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQG 415
             SF   +L + WR    +   Q +D +   +   W Q    +G+ S+   RI+NP  QG
Sbjct: 331 LMSFASYNLWLPWRDSGLHLARQFVDYEPGIH---WSQCQMQSGSTSINTIRIYNPIKQG 387

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
              DPQG FIR W PEL +VPT +IH P  W+    L    P PIVD
Sbjct: 388 MDHDPQGLFIRQWCPELKDVPTIHIHEP--WM----LGGGMPAPIVD 428


>gi|195157984|ref|XP_002019874.1| GL12637 [Drosophila persimilis]
 gi|198455482|ref|XP_001360014.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
 gi|205696352|sp|Q293P8|CRY1_DROPS RecName: Full=Cryptochrome-1
 gi|194116465|gb|EDW38508.1| GL12637 [Drosophila persimilis]
 gi|198133263|gb|EAL29166.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
          Length = 540

 Score =  139 bits (351), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 133/523 (25%), Positives = 225/523 (43%), Gaps = 66/523 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65
             +++W R+ LR+ DN AL AA    D  +  I VFI   E      +   +  F+  SL
Sbjct: 5   GANVLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAGTKSVGYNRMRFLLDSL 64

Query: 66  L----QVQKSLSQKGIVFQYHQ-----CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
                Q+Q +   +G +F +            + +  L   C +     ++  R      
Sbjct: 65  QDLDEQLQSATEGRGRLFVFEGEPTLIFRRLHEQVR-LHKICAELDCEPIWNERDESARL 123

Query: 117 VRRDKLLE--KRLQH-----RVICKSFDDSVLLPPGS--ILNHALQMYKVYTPFRKALIQ 167
           + R+  +E  +++ H     R++ ++      +PP +  +  H +Q+  V  P R A+  
Sbjct: 124 LCRELGIEYVEKVSHTLWDPRLVIETNGG---IPPLTYQMFLHTVQIIGV--PPRPAIDA 178

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFC 223
           ++  A    L     +  G       P  F+     +  +  I    GE  AL +L +  
Sbjct: 179 HINDATFIQLAPELRQHLGCFDQVPNPEHFNIYSDNMGFLAKINWRGGETQALALLEERL 238

Query: 224 K------EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275
           K      E+ YY   Q +    +    +S +L  G LS R+ +  + + F ++ +     
Sbjct: 239 KVERNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRRFYWSVHDLFENVQLAACVR 298

Query: 276 ----SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLL 323
                G      +LIWRE++  +    P+        +C+    IPW +      D +LL
Sbjct: 299 GVQIEGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLT---IPWAKP-----DENLL 350

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382
           Q W+ G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD
Sbjct: 351 QRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPGLKHFLKYLLD 410

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
            D +   G W W +S+  + +    +   P    KR DP+G +IR ++PEL N+P +YIH
Sbjct: 411 ADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPEGVYIRRYVPELKNLPKEYIH 470

Query: 442 APHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
            P     +        + ++YP  I+D  KA    +    A +
Sbjct: 471 EPWRLSAEQQVKFECLIGVHYPERIIDLSKAVKRNMMAMTALR 513


>gi|157412732|ref|YP_001483598.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9215]
 gi|157387307|gb|ABV50012.1| Deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9215]
          Length = 497

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 208/480 (43%), Gaps = 57/480 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W + DLRI +N+ALY +  ++D  ++ ++I   E W Q   S RQ  F   S+L +
Sbjct: 4   INILWFKKDLRIDENEALYESLKDND--ILPIYIFEIEVWNQKTHSRRQWQFCKESVLDL 61

Query: 69  QKSLSQKG--IVFQYHQCSNFDDSIEW----LDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           + SL + G  ++ +     N  + I      +  Y  Q+    + Y R  E+     +K 
Sbjct: 62  RNSLKEIGQPLIIRTGNVINIFEEISSKFNVVGIYSHQETGDWVTYKRDKEVKLWAANK- 120

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
                  ++I + F         S+    +        ++K   + L++  LR  P+   
Sbjct: 121 -------KIIWREF------LQFSVFRGNINRDDWSKKWKKNTERELIKRPLRISPID-- 165

Query: 183 RLTGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--A 238
                     IP  + F +           G +  +  ++ F  EK+  Y +    P  +
Sbjct: 166 -----FDIGEIPDEKIFSFKKDECKGSLKGGRKKGIERMQYFFNEKLNSYSKNISSPEKS 220

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S+LSPY+S G +S       LKE F    +   + +  + + L W   +   +   
Sbjct: 221 FDSCSRLSPYISWGCIS-------LKEIFYKANLNKNNNSIMFKSRLTWHCHFIQKLESE 273

Query: 299 PSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           P +  C   P+     K    K++ LL  W QG TG+P IDA MR LN  GW++ R+R +
Sbjct: 274 PELEFCDFHPYF----KNSRTKNTELLLLWSQGNTGYPFIDACMRSLNFNGWINFRMRAM 329

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQG 415
             SF   +L + W+       ++ +D +   +   W Q    +G  S+   RI+NP  QG
Sbjct: 330 LMSFASYNLWLPWQDSGSELANKFVDYEPGIH---WNQCQMQSGTTSINTNRIYNPIKQG 386

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLS----LNYPLPIVDHKKACHHT 470
           K  DP+G FIR W+PEL NV   +IH P  W L K +      L Y  PIVD  K     
Sbjct: 387 KDHDPEGEFIRKWVPELKNVAIDFIHEP--WILSKFNCDEYAKLEYIKPIVDISKTSREA 444


>gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus]
          Length = 501

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 137/523 (26%), Positives = 233/523 (44%), Gaps = 84/523 (16%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFI 61
           T ++  + W R DLR+ DN AL  A + ++ +   +  +++  P+   ++ +   +  F+
Sbjct: 2   TKVASVIHWFRLDLRLHDNLALRNAINEAENRKQILRPIYVIDPDI--KNRVGCNRLRFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  SL +        +      +IE L     +  V  L      + + V++D+
Sbjct: 60  FQSLKNLDTSLRKINTRLYVIKGK----AIECLPKLFDEWHVKFLTLQVDIDADLVKQDE 115

Query: 122 LLE-----------KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
           ++E           KR+QH V    F+  V    GSI    L   K  +      +++++
Sbjct: 116 VIEEFCEANNIFVVKRMQHTVY--DFNSVVKKNNGSI---PLTYQKFLSLVSDVQVKDII 170

Query: 171 QA-------------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           Q              D +   +P++   G V  S +           +  +P GE   L 
Sbjct: 171 QISKGVSDECKASDYDSQGYDIPSLEEFG-VNESELS----------ECKYPGGESEGLK 219

Query: 218 ILRKFCKEK--VYYYVEQRDIP-AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            L  +  +K  V  + + +  P +I+  T+ LSPY+S G LS +  +++LK+  V+   K
Sbjct: 220 RLDVYMAKKQWVCNFEKPKSSPNSIEPSTTVLSPYISHGCLSAKLFYHKLKQ--VENGSK 277

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQA 325
                 S + +L+WREFY    +           SVC          +I W K+   L+A
Sbjct: 278 HTLPPVSLMGQLMWREFYYTAGSGTENFDKMVGNSVCT---------QIPWKKNDAHLKA 328

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384
           W +G TG+P +DA MRQL   GW+H+  R + A FL + DL + W  G + F   LLD D
Sbjct: 329 WAEGKTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKVFEDFLLDYD 388

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            + N G W W +++      Y+R+++P   GK+ D  G +IR ++PEL   P+++I+ P 
Sbjct: 389 WSLNAGNWMWLSASAF-FYKYYRVYSPVAFGKKTDKDGLYIRKYVPELKKYPSEFIYEP- 446

Query: 445 SWLDKND--------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            W             +   YP  IVDH K     + +  AA K
Sbjct: 447 -WKAPKGVQKTAGCIIGEGYPNRIVDHDKVHKDNIQKMNAAYK 488


>gi|24648152|ref|NP_732407.1| cryptochrome [Drosophila melanogaster]
 gi|74960862|sp|O77059|CRY1_DROME RecName: Full=Cryptochrome-1; Short=DmCRY1; Short=dcry; AltName:
           Full=Blue light photoreceptor
 gi|3724370|dbj|BAA33787.1| blue-light receptor [Drosophila melanogaster]
 gi|3983154|gb|AAC83828.1| cryptochrome [Drosophila melanogaster]
 gi|7300494|gb|AAF55649.1| cryptochrome [Drosophila melanogaster]
 gi|15291339|gb|AAK92938.1| GH16672p [Drosophila melanogaster]
 gi|220945540|gb|ACL85313.1| cry-PA [synthetic construct]
 gi|220955344|gb|ACL90215.1| cry-PA [synthetic construct]
          Length = 542

 Score =  139 bits (351), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 212/478 (44%), Gaps = 52/478 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65
             +++W R+ LR+ DN AL AA  + D  +  I VFI   E      +   +  F+  SL
Sbjct: 5   GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64

Query: 66  L----QVQKSLSQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEV 117
                Q+Q +   +G  +VF+      F    E   L   C++Q    ++  R   I  +
Sbjct: 65  QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSL 124

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-GSILNHALQMYK-----VYTPFRKALIQNLVQ 171
            R+  L      +V    +D  +++   G I     QM+      +  P R      L  
Sbjct: 125 CRE--LNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLED 182

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKV 227
           A    L     R          P  F+     +  +  I    GE  AL +L +  K + 
Sbjct: 183 ATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQ 242

Query: 228 Y-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------K 275
           +     +Y+  + +P I  + + +S +L  G LS R+ +  + + F ++ ++        
Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302

Query: 276 SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327
           +G      +LIWRE++  +    P+        +C+    IPW +  E     +LLQ+W+
Sbjct: 303 TGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLS---IPWAKPNE-----NLLQSWR 354

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386
            G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +
Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWS 414

Query: 387 SNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
              G W W +S+  + +    +   P    KR DP GT+I+ ++PEL NVP +++H P
Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEP 472


>gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis]
          Length = 557

 Score =  139 bits (350), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 139/500 (27%), Positives = 213/500 (42%), Gaps = 55/500 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SVH  W R  LR+ DN AL AA  ++ + V  V+I  P           +  F+  SL  
Sbjct: 3   SVH--WFRKGLRLHDNPALSAALRDATS-VRCVYILDPWFAASSSGGVNRWRFLLQSLED 59

Query: 68  VQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +  SL +   +  V +      F     EW         V++L +    E     RD ++
Sbjct: 60  LDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVSRLTFEYDSEPFGKERDAVI 111

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182
            K  +   +    ++S  L     L+  +++     P      Q ++ + +L   P P++
Sbjct: 112 MKLAKEAGVEVIVENSHTL---YDLDRIIELNGHSPPLTYKRFQAIISRMELPRRPAPSV 168

Query: 183 -RLTGPVTPSNIPRFFD--YPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY 228
            R       + I R  D  Y   ++D +           +P GE  AL  L +  + K +
Sbjct: 169 TRQQMEACRAEIKRNHDETYGVPSLDELGFHSEIKGPSIWPGGETEALARLDRHLERKAW 228

Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
             V   + P +   S       LSPYL  G LS R  + RLKE +  +  K      S  
Sbjct: 229 --VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLKELYKKVK-KNSPPPLSLY 285

Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +L+WREF+       P      G P      +I W+K+   L  W +G TGFP IDA M
Sbjct: 286 GQLLWREFFYTAATNNPKFDQMEGNPI---CVQIPWDKNPKALAKWAEGKTGFPWIDAIM 342

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL   W  G + F   LLD D + N G W W + + 
Sbjct: 343 TQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLSCSA 402

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453
                +F  + P   G+R DP G ++R +LP L   P++YI+ P S  +      K  + 
Sbjct: 403 FFQQ-FFHCYCPVGFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIG 461

Query: 454 LNYPLPIVDHKKACHHTLNQ 473
           ++YP PIV+H +A    + +
Sbjct: 462 IDYPKPIVNHAEASRMNIER 481


>gi|195497880|ref|XP_002096288.1| GE25590 [Drosophila yakuba]
 gi|194182389|gb|EDW96000.1| GE25590 [Drosophila yakuba]
          Length = 542

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 213/478 (44%), Gaps = 52/478 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65
             +++W R+ LR+ DN AL AA  + D  +  I VFI   E      +   +  F+  SL
Sbjct: 5   GANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64

Query: 66  L----QVQKSLSQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEV 117
                Q+Q +   +G  +VF+    + F    E   L   C++Q    ++ +R   I  +
Sbjct: 65  QDIDDQLQAATDGRGRLLVFEGEPANIFRRLHEQVRLHRICIEQDCEPIWNDRDESIRFL 124

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-GSILNHALQMYK-----VYTPFRKALIQNLVQ 171
            R+  L      +V    +D  +++   G I     QM+      +  P R      L  
Sbjct: 125 CRE--LNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLED 182

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKV 227
           A    L     R          P  F+     +  +  I    GE  AL +L +  K + 
Sbjct: 183 ATFVELDSEFCRSLNLFEKLPAPDHFNVYTDNMGFLAKINWRGGETQALLLLDERLKVEQ 242

Query: 228 Y-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------K 275
           +     +Y+  + +P I  + + +S +L  G LS R+ +  + + F ++ ++        
Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302

Query: 276 SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327
           +G      +LIWRE++  +    P+        +C+    IPW +  E      LLQ W+
Sbjct: 303 TGGAHLTGQLIWREYFYTMSVNNPNYDRMEGNEICLS---IPWAKPKE-----DLLQRWR 354

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386
            G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +
Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWS 414

Query: 387 SNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
              G W W +S+  + +    +   P    KR DP+GT+I+ ++PEL NVP +++H P
Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPEGTYIKQYVPELINVPREFVHEP 472


>gi|148242284|ref|YP_001227441.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
 gi|147850594|emb|CAK28088.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
          Length = 503

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 207/491 (42%), Gaps = 47/491 (9%)

Query: 2   KATTAMSV-------HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS 54
           ++TTA SV        +VW + DLR  D+ AL  A  +    V+ +FI  P  W Q   S
Sbjct: 10  RSTTAESVSEPNQPLQVVWFKRDLRTIDHGALSQA--SRSGPVLPLFIVEPMFWAQPDAS 67

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           ARQ  F   SL +++++L+  G            +++  L +   Q+ + +L+ +++   
Sbjct: 68  ARQWEFCAESLAELREALAALGQPL----VIRTGEALAVLKALHRQRGIAQLWSHQETGN 123

Query: 115 N-EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
           +   RRD+L+ +       C+        P    +  A+     + P  + L++  V AD
Sbjct: 124 DFTYRRDRLVAR------WCREQSIRWHQPRSFGVIRAMGNRDGWAPAWELLMRQSVCAD 177

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDY--PFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
               P P  RL G + P  IP   D   P          G      +L  F   +   Y 
Sbjct: 178 ----PAPLTRLGG-IDPGGIPSADDLKLPSDPCPGRQRGGRSQGAALLESFLHHRGRRYA 232

Query: 232 EQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           ++   P  A +  S+LS +L+ G LS R+         +    +  +G  +++  L W  
Sbjct: 233 KELSSPLTAFESCSRLSAHLTFGTLSMRE---------IVQTARLNNGPKAFVERLHWHC 283

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            +   +   PS+        +        D   L  W +G TG+P +DA MR L   GW+
Sbjct: 284 HFIQKLESQPSLEYQNAHRAYDGLRA--DDPQRLALWIEGRTGWPFVDACMRALRHHGWI 341

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRI 408
           + R+R +  S     L + WR   E      +D +   +   W Q    +G   +   RI
Sbjct: 342 NFRMRAMLMSVASYQLWLPWRQSGEALARLFVDYEPGIH---WNQCQMQSGTSGINTVRI 398

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           +NP  QG   DP+G FIR WLPEL  VP   IH P  WL        YP P+VD++ A  
Sbjct: 399 YNPIKQGLDHDPEGAFIRQWLPELQGVPVSGIHTP--WLLAQPPE-TYPHPVVDYEAAAR 455

Query: 469 HTLNQYYAAKK 479
              +Q +  +K
Sbjct: 456 QARDQVWGLRK 466


>gi|119471065|ref|ZP_01613624.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
 gi|119445905|gb|EAW27186.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
          Length = 436

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 200/444 (45%), Gaps = 59/444 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYASL 65
           L WL+NDLR+ DN  +++        +  VF+  P       ++Q      +  F+  SL
Sbjct: 6   LYWLKNDLRLNDN-PIFSKLALQQCALDVVFVINPNWFKNTNYQQKQYGENKYTFLMQSL 64

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++Q++L  +G      +     + +  L     +Q + ++ Y+ Q+ + E R   LL+ 
Sbjct: 65  YELQQALIARGQTLHVLE----GEPVSVLKQRIKEQHIDEVVYSEQFGVYEQREINLLKA 120

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                    +  D+ L     +  +   + K +TPF+K       + +  ++P+    +T
Sbjct: 121 HCPQIQFTGTLQDT-LYQQNELPFNLTDLPKSFTPFKK-------KVEAANIPITLSHIT 172

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH----ILRKFCKE------KVYYYVEQRD 235
             + P  I      P +      P    N++H      +K C++         Y + +  
Sbjct: 173 TELLPKPITLCAKNPIE-----LPKAINNSMHGGLTSAQKHCEQYFAGELPSTYKITRNA 227

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYR-H 293
           +     T++ SP+L+ G +S +Q +N + E++        S    W+  EL+WRE+++ H
Sbjct: 228 LDGFDNTTKFSPWLAFGCISAKQIYNAV-EQYEQTYTANDSTY--WIKFELLWREYFKWH 284

Query: 294 LMAFYPSVCMGK---------PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
            +    S+   K          F+P           +   AW QG T +P+++A M++LN
Sbjct: 285 ALNVQSSLFSFKGQKQTKPLTTFMP-----------NRFAAWCQGTTPYPLVNAIMKELN 333

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G++ NR R I AS LV +L +DWR G  YF  QL+D D+A+N G WQ+ A  G D   
Sbjct: 334 ATGFITNRSRQIVASCLVNELGLDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGVDPRG 393

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428
             R FN   Q ++FDP+  + + W
Sbjct: 394 -GRHFNIEKQTQQFDPKSIYTKKW 416


>gi|88802912|ref|ZP_01118439.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii
           23-P]
 gi|88781770|gb|EAR12948.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii
           23-P]
          Length = 486

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 137/504 (27%), Positives = 222/504 (44%), Gaps = 74/504 (14%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ DLR+ D+  L+ A        I ++   P        S R   F+Y SL  +
Sbjct: 6   INIVWLKRDLRLRDHVPLHTA-EQKGVPYIIIYFFEPSIIEYPDTSPRHLQFVYHSLKSL 64

Query: 69  QKSLS---QKGIVFQYHQCSNFD-----DSIEWLDSYCLQQRVTKLFYNRQYEI------ 114
            K L+   +K  VF       F+      SI+ L SY  Q+   K  + R  +I      
Sbjct: 65  DKGLANYNRKVEVFYGEAMDIFNFLNTHYSIQQLFSY--QESGLKKTWQRDKKIRAFCAI 122

Query: 115 -----NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
                 E +RD ++          K +  ++  P   IL +   + K+ T     ++   
Sbjct: 123 NNIYWEESQRDGIIRGLKNRDTWNKRWHAAMHTP---ILKNNYSVSKLNTVEHAYVLPQE 179

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
           + A L                 N P+ +           P GE+NA   L  F +++ + 
Sbjct: 180 LVAKL----------------ENYPKHYQ----------PAGEENAWRYLTSFTQKRGFN 213

Query: 230 YVEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELI 286
           Y      P       S+LSPY + G +S +Q ++ + +          + AFS  L  L 
Sbjct: 214 YHRHISKPTESRIACSRLSPYFAWGNISIKQVFHYVGKHPNGT---ANNRAFSGMLTRLH 270

Query: 287 WREFYRH---LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           W   +     +   Y ++C+ K +    E +   K++  L+AWK G TG+P+IDA MR +
Sbjct: 271 WHCHFIQKFEVECTYETLCVNKGY----ELLAHKKNALFLKAWKTGQTGYPLIDACMRAV 326

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDS 402
              GW++ R+R +  SFL  +L  DWR G  +   Q LD +   +   +Q  A +TG ++
Sbjct: 327 EQTGWINFRMRAMVVSFLTLNLDQDWRDGVYHLACQFLDYEPGIHYPQFQMQAGTTGINT 386

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKN----DLSLNY 456
           V   R++NP    +  DPQG FI+ W+PEL NVP  YIH P   S +++      +  +Y
Sbjct: 387 V---RLYNPVKNSEEHDPQGVFIKKWVPELENVPEAYIHEPWTMSLMEQAFCGVAIGEDY 443

Query: 457 PLPIVDHKKACHHTLNQYYAAKKQ 480
           PLPIVD K +     ++ +  KK 
Sbjct: 444 PLPIVDLKTSAKLARDKIWGHKKH 467


>gi|156977901|ref|YP_001448807.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
 gi|156529495|gb|ABU74580.1| hypothetical protein VIBHAR_06693 [Vibrio harveyi ATCC BAA-1116]
          Length = 460

 Score =  139 bits (350), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 137/444 (30%), Positives = 200/444 (45%), Gaps = 53/444 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHF 60
           ++ L W  NDLR+ DN  L  A    DA +       ++ F+A   Q    G + +Q  F
Sbjct: 14  TIGLYWFTNDLRMHDNPLLARASEEVDALIFVYCYPKLSPFLAHFAQESMFGSAKQQ--F 71

Query: 61  IYASLLQVQKSLS---QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           +  SL  V  +L+   Q+  V   H       ++E L   C    VT L+ +      E 
Sbjct: 72  LDESLHCVNLTLNAFDQRLQVVDLHPYQAIKHAVEKL---C----VTHLYCDTFPGSEER 124

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRS 176
                + + L+H  IC+    S+L      L  AL+ +   +T FRK       +A+  S
Sbjct: 125 DVVDHIRQELEHLTICQQEVRSLLTVED--LPFALEDLPDTFTKFRK-------KAENVS 175

Query: 177 LPVPAIRLTG-PVTPSNIPRFFDYPFQAIDP-MFPIGEQNAL-HILRKFCKEKVYYYVEQ 233
           L  P   +T  P TPS +        + + P +F  GEQ  L H  R F       Y + 
Sbjct: 176 LEEPFATVTALPPTPSGLALPTLRLIRDVKPCLFTGGEQAGLEHARRYFSSTLASEYKQT 235

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY- 291
           R+ +  +  +++ SP+L+ G LSP+  +  LK    + L       +    EL+WRE++ 
Sbjct: 236 RNGLDGMDYSTKFSPWLAHGCLSPKTIYAMLKR--YERLKGANESTYWIYFELLWREYFY 293

Query: 292 -------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
                  R L  F   +    P   +         +H  Q WK+G T FPI++A M QLN
Sbjct: 294 WYARRHKRQLFRF-GGIQNQAPLTSFY--------AHRFQQWKKGETPFPIVNACMHQLN 344

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+M NR R + AS LV +L +DWR G  YF SQL+D D+ASN G WQ+ A  G D   
Sbjct: 345 ETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG 404

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428
             R FN   Q + +DP   FI  W
Sbjct: 405 S-RQFNLEKQTEIYDPHMEFIDRW 427


>gi|47207105|emb|CAF92156.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 755

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 134/476 (28%), Positives = 207/476 (43%), Gaps = 61/476 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQS----HFIYASL 65
           L+W R DLR+ DN AL AA     A VI +FI +PE+     G++        ++++ +L
Sbjct: 106 LLWFRRDLRLCDNPALTAALEVG-APVIPIFIWSPEEEEGPAGVTVATGGACKYWLHQAL 164

Query: 66  LQVQKSLSQKG--IVF--QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL + G  +VF            S++ L     +     +  N  YE     RD 
Sbjct: 165 SCLCASLERNGSHLVFLRSAEAGGEGGSSLQTLKELVKETGARTVMANALYEPWLKDRDH 224

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKV--YTPFRKALIQN---LVQADLR 175
                L +  V CK F    L  P S+    + +  +   + F     QN    + A L 
Sbjct: 225 AAAVALWKSGVECKMFHSYCLRDPYSVRTEGVGLRGIGSVSHFLSCCRQNPGPALGAPLE 284

Query: 176 ---SLPVPAIRLTGP----VTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCK 224
              +LPVPA    G     +  + +PR  D        +I   +   E+ A   L  F  
Sbjct: 285 PPTALPVPAHWPRGAPLEALGLARMPRRKDGTTVDWAASIRKSWDFSEEGAHARLEAFLG 344

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           + VY Y ++        TS +SPYL  G LSPR  W  L +        PK     +  +
Sbjct: 345 DGVYRYDKESGRADAPNTSCVSPYLHFGQLSPR--WV-LWDAKAARCRPPK-----FQRK 396

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWT------EKIEWNKDSHLLQAWKQGYTGFPIIDA 338
           L WR+     ++ +P        +PW       + + W+ D   L+AW++G TG+P++DA
Sbjct: 397 LAWRDLAYWQLSLFPE-------LPWESLRPPYKALRWSSDRRHLKAWQRGGTGYPLVDA 449

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF-----------MSQLLDGDLAS 387
           AMRQL   GWM+N +R + ASFL+  L + W+ G  +F              L+D D+A 
Sbjct: 450 AMRQLWLTGWMNNYMRHVVASFLIAYLHLPWQEGYRWFQVRNGCRGDTGQDTLVDADVAI 509

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           +   WQ     G D   +  + +P       DP G+++R W PEL+ +P + IH P
Sbjct: 510 DAMMWQNGGMCGLDHWNF--VMHPVDAAMTCDPDGSYVRKWCPELSGLPDELIHKP 563


>gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana]
          Length = 543

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 136/498 (27%), Positives = 208/498 (41%), Gaps = 49/498 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP--EQWRQHGISARQS 58
           M+     SVH  W R  LR+ DN AL AA   +   V  V+I  P             + 
Sbjct: 1   MEGPAVSSVH--WFRKGLRLHDNPALLAALRGARC-VRCVYILDPWFAASSSSSGGVNRW 57

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  SL  +  SL + G      +    D        +     VT+L +    E     
Sbjct: 58  RFLLQSLEDLDSSLRKLGSRLFVGRGQPADVFPRLFKEWG----VTRLTFQYYSEPFGKE 113

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSL 177
           RD  + K  +   +    + S  L     L+  +++     P      Q +V + +L   
Sbjct: 114 RDAAIMKLAKEAGVEVIVESSHTL---YDLDKIIELNGNSPPLTYKRFQAIVSRMELPRR 170

Query: 178 PVPAI------RLTGPVTPS-----NIPRFFDYPFQAIDP---MFPIGEQNALHILRKFC 223
           PVP+I      +    +  +      +P   +  F   +P   ++P GE  AL  L +  
Sbjct: 171 PVPSITRQQMEKCRAEIKSTHDDTYGVPSLEELGFPRDNPGAAVWPGGETEALARLDRHL 230

Query: 224 KEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
           + K +  V   + P +   S       LSPYL  G LS R  + RL+E +  +  K    
Sbjct: 231 ERKAW--VAHYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLRELYQKV-KKNSPP 287

Query: 278 AFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
             S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP 
Sbjct: 288 PLSLFGQLLWREFFYTAATNNPKFDQMEGNPI---CVQIPWDKNPEALAKWTEGKTGFPW 344

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A FL + DL   W  G + F   LLD D + N G W W
Sbjct: 345 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW 404

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
            + +      +F  + P   G+R DP G ++R +LP L   P++YI+ P +  +      
Sbjct: 405 LSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVRRYLPVLKGYPSRYIYEPWNAPESVQKEA 463

Query: 449 KNDLSLNYPLPIVDHKKA 466
           K  + ++YP P+V+H +A
Sbjct: 464 KCIVGVDYPKPVVNHAEA 481


>gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
 gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
          Length = 533

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 143/285 (50%), Gaps = 18/285 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           FP GE   L  +++  +++++    ++   A       T+ LSPYL  G LS R    +L
Sbjct: 220 FPGGETEGLRRMKESLRDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFHQQL 279

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSH 321
           K   +    K      S + +L+WREFY  + A  P+    +G  +     +I W + + 
Sbjct: 280 KA-ILKRQSKHSQPPVSLIGQLLWREFYYTVAAAEPNFDRMLGNVY---CLQIPWQEQAD 335

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380
            L+AW  G TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G+  F   L
Sbjct: 336 HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLL 395

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD D A N G W W +++      YFR+++P   GK+ DPQG +IR ++PEL   P   I
Sbjct: 396 LDQDWALNAGNWMWLSASAFFH-QYFRVYSPVAFGKKTDPQGHYIRKYVPELAKYPNGCI 454

Query: 441 HAP--HSWLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + P   +  D+ +    L ++YP  IV H+      + +  AA K
Sbjct: 455 YEPWKATLADQREYGCVLGVDYPHRIVKHELVHKENIKRMSAAYK 499


>gi|313228844|emb|CBY17995.1| unnamed protein product [Oikopleura dioica]
          Length = 525

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 133/522 (25%), Positives = 230/522 (44%), Gaps = 73/522 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-ISARQSHFIYASLLQVQ 69
           L W R  LR+ DN+ L AA  +S+A V  V+    E  R +  I   +  F+  SL  + 
Sbjct: 11  LHWFRKGLRLHDNRPLLAAIRSSEA-VYCVYCLDLEWMRANERIGNNRIRFLLESLTDLD 69

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128
           ++L + G    +    N   +I+   ++C +  +T++ Y R  E+   + + ++LE+  +
Sbjct: 70  ENLRKIGTRL-FVLRGNARTAIK---TFCREYEITQMTYMRDAEVFYRQLEAEILEEVNR 125

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-----R 183
             ++ +S     L  P  I++       +      ++I +L   D+ +LP P +     +
Sbjct: 126 REIVTRSDHGHTLYDPQEIIDANEGQVPLSLDEFYSVIPSL---DVPALPAPTVTAEMFK 182

Query: 184 LTGPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQR- 234
                   N    +  P  A            +P GE  AL  L+   K+   Y   Q  
Sbjct: 183 SCSVRIEENHQAIYGVPTMASLGLECPRAHTRWPGGETVALERLKYKMKQNTLYEFNQGP 242

Query: 235 ----------DIPAIQG--------TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
                     +IP            T+ LSPY+++G +SPR  W+  K     +    + 
Sbjct: 243 STSKAANHEYEIPGTSEPWFETQPETTGLSPYINLGSISPRTFWHGAKNCSEKMRTTVQG 302

Query: 277 GAFSWLNELIWREFYRHLMAFYPS---------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                  ++I+REF+ + +A+  +         +C     I W++     + +  ++ +K
Sbjct: 303 -------QMIYREFF-YTVAYTVNNFTRIEGNRICKD---IKWSDPKTNERAAEWIEKFK 351

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL-VKDLLVDWRIGEEYFMSQLLDGDLA 386
           QG TG+P IDAA+RQ+ T GW+ +  R   ASFL V  +   W +G++ F   LLD D A
Sbjct: 352 QGMTGYPWIDAAVRQMKTEGWITHISRFSLASFLTVGQMWCSWEVGQQLFEEFLLDADYA 411

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
            N G + W   +   +    +  +P    +++D  G+FIR + PEL N+PTQYI AP  W
Sbjct: 412 LNAGNFLWVTGSAFANQIPVKALDPVKLARKWDTHGSFIRRYCPELKNLPTQYICAP--W 469

Query: 447 LDKNDLSL--------NYPLPIVDHKKACHHTLNQYYAAKKQ 480
               D+ L        +YP P+++        LN+  A  +Q
Sbjct: 470 KAPQDVQLKARAIIGVDYPAPMLNAATMRIQNLNKIKAHNQQ 511


>gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba]
          Length = 545

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 117/238 (49%), Gaps = 15/238 (6%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV- 301
           + LSPYL  G LS R+ +  L + +    IK      S   +L+WREFY       P   
Sbjct: 253 TGLSPYLRFGCLSARRFFAELNDLYRK--IKKSPAPLSLHGQLLWREFYYTAATNNPKFD 310

Query: 302 -CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              G P      +I W+K++  L  W  G TGFP IDA M QL   GW+HN  R   A F
Sbjct: 311 HMEGNPIC---VQIPWDKNAEALAKWAHGRTGFPWIDAIMSQLRKEGWIHNVARHAVACF 367

Query: 361 LVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           L + DL V W  G + F   LLD D + N G W W  S  +    +F  + P   G++ D
Sbjct: 368 LTRGDLWVSWEEGMKVFDELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVRYGRKAD 426

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTL 471
           P G +IR +LP L N PT+YIH P +  +      K  +  +YP+P+VDH K     L
Sbjct: 427 PNGDYIRTYLPVLKNFPTKYIHEPWTAPENVQKQSKCVIGRDYPMPMVDHVKQSQANL 484


>gi|153831247|ref|ZP_01983914.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39]
 gi|148873267|gb|EDL71402.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39]
          Length = 114

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 81/115 (70%), Gaps = 2/115 (1%)

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 1   DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 60

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N  S+ YP  +VDHK+    TL  Y  AK
Sbjct: 61  FIRRWVPELRSVSSAYIHQPWTYPAVN--SVLYPARLVDHKQEREVTLRLYKTAK 113


>gi|297582490|ref|YP_003698270.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
 gi|297140947|gb|ADH97704.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
          Length = 512

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 130/475 (27%), Positives = 201/475 (42%), Gaps = 47/475 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++VWL+ DLRI D++ L  A    +  V+ +F+     W    +S R   F+  SL ++
Sbjct: 2   VNVVWLKRDLRIFDHRPLKEAAEQGE--VLPLFVWEASVWAHGDLSVRHRDFVLQSLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDS-------YCLQQRVTKLFYNRQYEI-NEVRRD 120
            + L Q+G    Y       D +  L++       +  ++  T L + R   + N ++  
Sbjct: 60  DRRLDQRGARL-YTAVGEVIDVLTRLEADLGPFQLFAHEENGTPLTFERDIAVRNWMKAR 118

Query: 121 KLLEKRLQHRVIC---KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
               K   H  +    KS DD                 K Y  +  A +    +A     
Sbjct: 119 GCTMKEWPHFGVTRGLKSRDD---------------FQKGYERYVNAPVVPAPEAVRGIR 163

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYVEQRD 235
             PA    G   P  I      P  AI      GE+ A  +L+ F +E  K Y     + 
Sbjct: 164 HAPAWLTKGAGEPGGIA----LPGTAITRGQQGGERLAHGVLKGFLEERFKAYQVRISKP 219

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSWLNELIWREFYR 292
             + +  S+LSPYL+ G LS R  +        +L     K +  AF  L+ L W   + 
Sbjct: 220 FASAESCSRLSPYLAWGNLSVRYTYQETVARLGELGSGFHKKQLSAF--LSRLHWHCHFI 277

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             +   P +   +   P  + +         Q W  G TG P+IDAAMR L+  GW++ R
Sbjct: 278 QRLEDEPEIAH-RTMNPVFDTVRQTWSEEAYQRWLHGRTGIPLIDAAMRCLHETGWLNFR 336

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNP 411
            R +  SF+   L++DWR   E      LD +   +    Q  A +TG +++   RI+NP
Sbjct: 337 SRAMVISFVCNTLMLDWRRPAEDLSRLFLDYEPGIHYSQVQMQAGTTGFNTI---RIYNP 393

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
             QG+  DP G F+R ++PEL+ V   +IH P  W         YP+P+VD  KA
Sbjct: 394 VKQGQEHDPSGAFVRRFVPELSAVSDAFIHEP--WKLPAGPPKGYPMPMVDVAKA 446


>gi|195353691|ref|XP_002043337.1| GM26830 [Drosophila sechellia]
 gi|194127451|gb|EDW49494.1| GM26830 [Drosophila sechellia]
          Length = 542

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 129/478 (26%), Positives = 213/478 (44%), Gaps = 52/478 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASL 65
             +++W R+ LR+ DN AL AA  + D    +I VFI   E      +   +  F+  SL
Sbjct: 5   GANVIWFRHGLRLHDNPALLAALADKDQGIAIIPVFIFDGESAGTKNVGYNRMRFLLDSL 64

Query: 66  L----QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSY--CLQQRVTKLFYNRQYEINEV 117
                Q+Q +   +G  +VF+      F    E L  +  C++Q    ++  R   I  +
Sbjct: 65  QDIDDQLQAATDGRGRLLVFEGEPAYIFRRLHEQLRLHRICIEQDCEPIWNERDESIRSL 124

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPP-GSILNHALQMYK-----VYTPFRKALIQNLVQ 171
            R+  L      +V    +D  +++   G I     QM+      +  P R      L  
Sbjct: 125 CRE--LSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLDD 182

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKV 227
           A    L     R          P  F+     +  +  I    GE  AL +L +  K + 
Sbjct: 183 ATFVELDPEFCRSLKLFDQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVEQ 242

Query: 228 Y-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------K 275
           +     +Y+  + +P I  + + +S +L  G LS R+ +  + + F ++ ++        
Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302

Query: 276 SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327
           +G      +LIWRE++  +    P+        +C+    IPW +    N+D  LLQ W+
Sbjct: 303 TGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLS---IPWAKP---NED--LLQRWR 354

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386
            G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +
Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWS 414

Query: 387 SNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
              G W W +S+  + +    +   P    KR DP GT+I+ ++PEL NVP +++H P
Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEP 472


>gi|145881069|gb|ABP97098.1| cryptochrome CRY1 [Acropora millepora]
          Length = 552

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 203/500 (40%), Gaps = 64/500 (12%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W+R DLR+ DN +L  A   SD  V  +++   +     GI      F+  SL  V  SL
Sbjct: 32  WVRKDLRLHDNPSLLEAVKGSDT-VRIIYVLDTKVDHATGIGLNLWRFLLQSLEDVDDSL 90

Query: 73  SQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            +   +  V +      F     EW  S+        L +    E     +D  +    Q
Sbjct: 91  RKLNSRLFVVRGQPADVFPRLFREWKTSF--------LTFEEDSEPFGREKDAAIRLLAQ 142

Query: 129 HRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  +   S  L  P  I+ H      +      A++++L         +    L G 
Sbjct: 143 ESGVEVAVGRSHTLYDPQLIIKHNSGTAPLTYKKFLAIVRSLGNPQHPCATLDVHLLGGC 202

Query: 188 VTPSN--------IPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
            TP +        +P   +           I   GE  AL  L +  + K +  +   + 
Sbjct: 203 STPVSEDHEEKFGVPSLKELGLDVAKLSTEIWHGGETEALIRLDRHLERKAW--IASFEK 260

Query: 237 PAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           P +   S       LSPYL  G LSPR  ++RL E +    +K K    S   +L+WREF
Sbjct: 261 PKVTPNSLFPSPTGLSPYLRFGCLSPRLFYHRLSELYRK--VKCKDPPISLYGQLLWREF 318

Query: 291 YRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           +  + A  P+        VC+    IPWT   EW      L+ W+QG TGFP IDA M Q
Sbjct: 319 FFTVAANNPNFDQMDENPVCLQ---IPWTANPEW------LKKWEQGQTGFPWIDAIMIQ 369

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   G +H+  R     FL + DL + W  G + F   LLD + + N G W W + +   
Sbjct: 370 LKQEGXIHHLARHAVGCFLTRGDLWISWEEGMKVFERWLLDAEWSLNAGNWMWLSCSAFF 429

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LS 453
              +F    P   G++ DP G ++R +LP L   P +YIHAP  W    +        + 
Sbjct: 430 Q-QFFNCICPVGFGRKLDPNGDYVRKYLPVLKGFPAKYIHAP--WTAPENVQRAARCIIG 486

Query: 454 LNYPLPIVDHKKACHHTLNQ 473
            +YP PIVDH K     L +
Sbjct: 487 KDYPRPIVDHHKVSTANLEK 506


>gi|223944515|gb|ACN26341.1| unknown [Zea mays]
          Length = 470

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 130/231 (56%), Gaps = 11/231 (4%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           TS LSPYL  G LS R+ +++++ + +    D     +     +L  +  RE+ R+L   
Sbjct: 15  TSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLRSIGLREYSRYLTFN 74

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P     KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R++ 
Sbjct: 75  HP-CSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWVHDRIRVVV 133

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP  +G +
Sbjct: 134 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYK 193

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462
           FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYP PIV+
Sbjct: 194 FDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVE 244


>gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries]
 gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries]
          Length = 596

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 140/502 (27%), Positives = 213/502 (42%), Gaps = 61/502 (12%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +   A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+
Sbjct: 21  RGDGASSVH--WFRKGLRLHDNPALLAAVRGAHC-VRCVYILDPWFAASSSVGINRWRFL 77

Query: 62  YASLLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEV 117
             SL  + +SL +   +  V +      F     EW         VT+L +    E    
Sbjct: 78  LQSLEDLDRSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGK 129

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRS 176
            RD  + K  +   +    ++S  L     L+  +++     P      Q ++ + +L  
Sbjct: 130 ERDAAIMKMAKEAGVEVVTENSHTL---YDLDKIIELNGQKPPLTYKRFQAIISRMELPR 186

Query: 177 LPVPAIR------LTGPVTPS-----NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKF 222
            PV ++           +  S      +P      +P + + P ++  GE  AL  L K 
Sbjct: 187 KPVGSVTSQQMEGCQAEIQESHDETYGVPSLEELGFPTEGLGPAVWRGGETEALARLDKH 246

Query: 223 CKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
            + K +    +R  P +  +S       LSPYL  G LS R  + RL     DL  K K 
Sbjct: 247 LERKAWVASYER--PRMNASSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYRKVKR 300

Query: 277 GA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
            +    S   +L+WREF+       P      G P      +I W+++   L  W +G T
Sbjct: 301 NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAEGKT 357

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390
           GFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N G
Sbjct: 358 GFPWIDAIMAQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAG 417

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-- 448
            W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +  
Sbjct: 418 SWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESI 476

Query: 449 ----KNDLSLNYPLPIVDHKKA 466
               K  + ++YP PIV+H +A
Sbjct: 477 QKAAKCIIGVDYPRPIVNHAEA 498


>gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi]
          Length = 788

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 155/343 (45%), Gaps = 37/343 (10%)

Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNI--------PRFFDYPFQAID---PMFPIG 211
           +ALI ++        P+    L G  TP ++        P   +  F+  D   PM+  G
Sbjct: 185 QALIASMPPPQPAEAPISIETLNGAKTPVSVDHDDRFGVPTLEELGFETEDLKPPMWMGG 244

Query: 212 EQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEF 267
           E  AL  L +  + K  V  +   +  P     SQ  LSPYL  G LS R  + +L E +
Sbjct: 245 ESEALARLDRHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTELY 304

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQA 325
               IK      S   +++WREF+       P+     G P      +I W K+   L  
Sbjct: 305 KK--IKRVRPPLSLHGQILWREFFYCAATRNPNFDRMEGNPIC---VQIPWEKNQEALSK 359

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384
           W  G TG+P IDA M QL   GW+H+  R   A FL + DL + W  G + F   +LD D
Sbjct: 360 WANGQTGYPWIDAIMIQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELMLDAD 419

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            + N G W W  S  +    +F  + P   G++ DP G FIR ++P L N+PT+YIH P 
Sbjct: 420 WSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEP- 477

Query: 445 SWLDKND--------LSLNYPLPIVDHKKACHHTLN---QYYA 476
            W+            +  +YPLP++DH KA    L    Q YA
Sbjct: 478 -WVAPESVQQAAQCVVGCDYPLPMLDHTKASQINLERIKQVYA 519


>gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus]
          Length = 584

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 143/504 (28%), Positives = 210/504 (41%), Gaps = 65/504 (12%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F
Sbjct: 8   MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 64

Query: 61  IYASLLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINE 116
           +  SL  +  SL +   +  V +      F     EW         VT+L +    E   
Sbjct: 65  LLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFG 116

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
             RD  + K  +   +    ++S  L     L+  +++     P      Q L+      
Sbjct: 117 KERDAAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQALISR--ME 171

Query: 177 LPV-PAIRLTGPVTPS-------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219
           LP  PA+ ++     S              +P      +P + + P ++  GE  AL  L
Sbjct: 172 LPKKPAVAVSSQQMESCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARL 231

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            K  + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K
Sbjct: 232 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKK 285

Query: 274 PKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
            K  +    S   +L+WREF+       P      G P      +I W+++   L  W +
Sbjct: 286 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAE 342

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387
           G TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + 
Sbjct: 343 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 402

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  
Sbjct: 403 NAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAP 461

Query: 448 D------KNDLSLNYPLPIVDHKK 465
           +      K  + ++YP PIV+H +
Sbjct: 462 ESVQKAAKCIIGVDYPRPIVNHAE 485


>gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus]
 gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus]
 gi|81882058|sp|Q9R194|CRY2_MOUSE RecName: Full=Cryptochrome-2
 gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus]
 gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus]
 gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
 gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
 gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus]
 gi|123212126|emb|CAM20614.1| cryptochrome 2 (photolyase-like) [Mus musculus]
 gi|123220429|emb|CAM15994.1| cryptochrome 2 (photolyase-like) [Mus musculus]
 gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
 gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
          Length = 592

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 143/504 (28%), Positives = 210/504 (41%), Gaps = 65/504 (12%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F
Sbjct: 16  MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 72

Query: 61  IYASLLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINE 116
           +  SL  +  SL +   +  V +      F     EW         VT+L +    E   
Sbjct: 73  LLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFG 124

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
             RD  + K  +   +    ++S  L     L+  +++     P      Q L+      
Sbjct: 125 KERDAAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQALISR--ME 179

Query: 177 LPV-PAIRLTGPVTPS-------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219
           LP  PA+ ++     S              +P      +P + + P ++  GE  AL  L
Sbjct: 180 LPKKPAVAVSSQQMESCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARL 239

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            K  + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K
Sbjct: 240 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKK 293

Query: 274 PKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
            K  +    S   +L+WREF+       P      G P      +I W+++   L  W +
Sbjct: 294 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAE 350

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387
           G TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + 
Sbjct: 351 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 410

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  
Sbjct: 411 NAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAP 469

Query: 448 D------KNDLSLNYPLPIVDHKK 465
           +      K  + ++YP PIV+H +
Sbjct: 470 ESVQKAAKCIIGVDYPRPIVNHAE 493


>gi|149375532|ref|ZP_01893302.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
 gi|149360237|gb|EDM48691.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
          Length = 440

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 126/440 (28%), Positives = 202/440 (45%), Gaps = 41/440 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAV-----FIATPEQWRQHGISARQSHFIYA 63
           V L W   DLR+ DN AL AA  +     + V     F+  P Q R   + A +  F++ 
Sbjct: 2   VSLYWFTRDLRLHDNAALLAASKSDMLLCVYVVDPRWFVPGPFQCR--ALGAHRWRFLWQ 59

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL+ +++ L   G          F    + +        + ++  +R     E  + K L
Sbjct: 60  SLISLERDLRPLGQRLHI----AFGKPEQVIPDLVHDHNINRVIRSRLPGTREAVQWKSL 115

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--IQNLVQADLRSLPVPA 181
             +L   V  + F+   L   GS+      +   ++ FRK +    N     LR   + A
Sbjct: 116 RDKLPQTVF-QQFETLSLFTEGSLPMDLSHLPDTFSQFRKQVEKTGNRNSERLRIRTLTA 174

Query: 182 IRLTGPVTPSNIPRFFDYPFQAI-DPMFPIG----EQNALHILRK--FCKEKVYYYVEQR 234
           +    P  P   P+       AI +P  PIG    E   L  L    F   ++ +Y E R
Sbjct: 175 L----PPAPG-YPQDNRGECPAIAEPRHPIGFRGGESAGLERLNDYLFVNHRIAHYKETR 229

Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + +     +S+LSP+L+ G LS R+  + + + + +  +K +S  + W  EL+WRE++  
Sbjct: 230 NALDEADASSRLSPWLANGALSAREVADTISD-YENQHVKNESTYWLWF-ELLWREYF-- 285

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
              ++ ++  G       + ++  K S     H  +AW  G T +P+++AAM QL   G+
Sbjct: 286 ---YWYALKHGASLFH-RDGVQQKKRSTSFYPHRFKAWCAGSTEYPLVNAAMNQLRETGY 341

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           + NR R I AS LV +L +DWR G  +F  QL+D D+ASN G WQ+ A  G D     R 
Sbjct: 342 ISNRSRQIVASCLVNELELDWRYGAAWFEEQLVDYDVASNYGNWQYQAGVGADPKGP-RH 400

Query: 409 FNPTIQGKRFDPQGTFIRHW 428
           FN   Q ++FDP G F++ W
Sbjct: 401 FNLEKQARQFDPDGDFVKRW 420


>gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio]
          Length = 598

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 136/490 (27%), Positives = 208/490 (42%), Gaps = 49/490 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SVH  W R  LR+ DN AL  A + +D  V  V+I  P       +   +  F+  SL  
Sbjct: 5   SVH--WFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESLED 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL +        +    D        +     VT+L +    E     RD  + K  
Sbjct: 62  LDTSLRKLNSRLSVVRGQPTDVFPRLFKEW----NVTRLTFEYDSEPYGKERDAAIIKMA 117

Query: 128 QHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI--- 182
           Q   +     +S  L  P  I+    +M     P      Q +V + +L   P+P I   
Sbjct: 118 QEYGVETVVRNSHTLYNPDRII----EMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQE 173

Query: 183 ---RLTGPVTPSN-----IPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYV 231
              R    ++ ++     +P   +  F+       +   GE  AL  L K    K +  V
Sbjct: 174 QMARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGETEALERLNKHLDRKAW--V 231

Query: 232 EQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              + P I G S       LSPYL  G LS R  +  L++ F+ L  +  S   S   +L
Sbjct: 232 ANFERPRISGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLRRR-SSPPLSLFGQL 290

Query: 286 IWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +WREF+       P+     G P      +I W+ +   L  W +G TGFP IDA M QL
Sbjct: 291 LWREFFYTAGTNNPNFDHMEGNPIC---VQIPWDHNPEALAKWAEGRTGFPWIDAIMTQL 347

Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
              GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W + +    
Sbjct: 348 RQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCSAFFQ 407

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNY 456
             +F  + P   G+R DP G +IR ++P+L + P +YI+    AP S     +  + ++Y
Sbjct: 408 Q-FFHCYCPVGFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIVGVDY 466

Query: 457 PLPIVDHKKA 466
           P P+++H ++
Sbjct: 467 PKPMINHAES 476


>gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
 gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
 gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus]
          Length = 594

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 142/502 (28%), Positives = 211/502 (42%), Gaps = 61/502 (12%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F
Sbjct: 16  MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 72

Query: 61  IYASLLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINE 116
           +  SL  +  SL +   +  V +      F     EW         VT+L +    E   
Sbjct: 73  LLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFG 124

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLR 175
             RD  + K  +   +    ++S  L     L+  +++     P      Q L+ + +L 
Sbjct: 125 KERDAAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQALISRMELP 181

Query: 176 SLPVPAI------RLTGPVTPS-----NIPRF--FDYPFQAIDP-MFPIGEQNALHILRK 221
             PV A+           +  +      +P      +P + + P ++  GE  AL  L K
Sbjct: 182 KKPVGAVSSQHMENCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDK 241

Query: 222 FCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
             + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K K
Sbjct: 242 HLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYRKVK 295

Query: 276 SGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
             +    S   +L+WREF+       P      G P      +I W+++   L  W +G 
Sbjct: 296 RNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEGK 352

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389
           TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N 
Sbjct: 353 TGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNA 412

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD- 448
           G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  + 
Sbjct: 413 GSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPES 471

Query: 449 -----KNDLSLNYPLPIVDHKK 465
                K  + ++YP PIV+H +
Sbjct: 472 VQKAAKCIIGVDYPRPIVNHAE 493


>gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
 gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
          Length = 546

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 146/527 (27%), Positives = 228/527 (43%), Gaps = 74/527 (14%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  L+W R  LR+ DN AL  A   S+  +  VF+  P     H + +  S F   S   
Sbjct: 5   SGSLIWFRKGLRVHDNPALEFASKGSEF-MFPVFVIDP-----HYMESDPSAFSPGS--- 55

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSY--------------CLQQ-RVTKLFYN 109
                S+ G   I F      + D S++ L S               CLQ+ +V +L + 
Sbjct: 56  -----SRAGVNRIRFLLESLKDLDSSLKKLGSRLLVLKGEPGEVLFRCLQEWKVKRLCF- 109

Query: 110 RQYEINEVRRDKLLEKRLQHRV------ICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
            +Y+ +     K L+ +++         +      ++  P   I  +  +    Y  F K
Sbjct: 110 -EYDTDPYY--KALDVKVKDYASSTGVEVFSPVSHTLFNPADVIEKNGGKPPLSYQSFLK 166

Query: 164 -ALIQNLVQADL--RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-----FPIGEQNA 215
            A   +  +++L      +P +   G +  S +P   +  ++  D       F  GE  A
Sbjct: 167 IAGEPSCAKSELVMSYSSLPPVGDVGNLGISEVPSLEELGYRDDDEQADWTPFRGGESEA 226

Query: 216 LHILRKFCKEK--VYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           L  L K   +K  V  + + +  P+      T+ +SPYL  G LS R  +  L+  + D+
Sbjct: 227 LKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDV 286

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
             K  S   S L +L+WREF+ +  AF              ++I WN+D  +L AW+ G 
Sbjct: 287 K-KHTSPPVSLLGQLLWREFF-YTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGK 344

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389
           TG+P IDA M QL   GWMH+  R   A FL + DL + W  G + F   L+D D A NN
Sbjct: 345 TGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINN 404

Query: 390 GGWQWAASTG-------NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH- 441
           G W W + +           V    +    +   ++DP G +IRH+LP L ++P QYI+ 
Sbjct: 405 GNWMWLSCSSFFYQAIKATFVMLTLVSQCIVMVSKYDPDGKYIRHFLPVLKDMPKQYIYE 464

Query: 442 ---APHSWLDKND--LSLNYPLPIVDH---KKACHHTLNQYYAAKKQ 480
              AP S   K +  +  +YP P+V H    K C   + + YA  K+
Sbjct: 465 PWTAPLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNKK 511


>gi|303279002|ref|XP_003058794.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459954|gb|EEH57249.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 527

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 201/490 (41%), Gaps = 66/490 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL+AA       V+A ++  P +  +         +++ +L  + +
Sbjct: 3   VVWFRQDLRVRDNPALHAAARTGR-PVVAAYVWCPREEGRWPTGGAARVWLHHALDGLTR 61

Query: 71  SLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +L++  G V      +    S E L           ++ NR YE  ++ RD   EK L  
Sbjct: 62  TLTRTYGAVLVLRDATR-TSSFEELRDVARACGAKDVYANRVYEPWKIARDDTCEKALAS 120

Query: 130 R--VICKSFDDSVLLPP---------GSILNHALQMYKVYTPFRKALIQNL--------- 169
              +  +SF+  VL  P          +  N      + +     AL +           
Sbjct: 121 ECGIRYRSFNAGVLYEPWDARPDATDDACWNSGYGSVRFFLRACAALGEPPPPLPAPASM 180

Query: 170 -----VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
                V+   RS+ + ++ L             D+    I   +  GE  A   LR F  
Sbjct: 181 RARLPVERRPRSVALESLGLAKMPRRRGGGGVIDWA-AGIRDAWTFGEDGADASLRAFLA 239

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           E + ++  +R   A   T+++SPY+  G LS R+ +   K   V         A  +L  
Sbjct: 240 EGLAHFDAKR---ADATTARISPYVRHGELSVREVYRAAKAASVGSRKSQARSAGVFLRR 296

Query: 285 LIWREFYRHLMAFYPSVCMGKPF----------IPWTEKIEWNKDS-------------- 320
           L WR+     +  +P +   +P           +PW        DS              
Sbjct: 297 LAWRDLAYWSLWRFPHLA-DEPLRPQYASQWWAVPWDPDPRGRGDSVPRAVSIVRRRWDV 355

Query: 321 -------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
                    L+AW++G TG+P++DAAMR+L   G++ N +R + A FL++ L +DWR G+
Sbjct: 356 FAPCSNDANLRAWQRGITGYPLVDAAMRELWITGYIPNYMRHVVAGFLIEYLNIDWRHGQ 415

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
            +F   L+D D+A     WQ    +G D   +  + +P    K  DP G ++R W PEL+
Sbjct: 416 LWFHDTLVDADVAIQGFMWQNGGHSGMDQWNF--VMHPVYAAKSADPDGEYVRRWCPELS 473

Query: 434 NVPTQYIHAP 443
            +P  Y H P
Sbjct: 474 KLPRDYAHCP 483


>gi|254784878|ref|YP_003072306.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
 gi|237684101|gb|ACR11365.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
          Length = 447

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 205/452 (45%), Gaps = 40/452 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-----TPEQWRQHGISARQSHFIYA 63
           V + W  NDLRITDN AL  A  + +  +I V+I       P ++    +   +  F+  
Sbjct: 10  VGVFWFSNDLRITDNAALNYAAQSCET-LICVYILDPRLYAPNRYGLRSMGPMRDRFLQE 68

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY----CLQQRVTKLFYNRQYEINEVRR 119
           SL Q+   L+  G      + S      + +  Y     ++ R    +  +Q+ + + R 
Sbjct: 69  SLAQLSVDLNAVGQTLLVLRESPLQAMAQLIGKYDPGLVVRSRQAGFYEYKQWAMLQRRY 128

Query: 120 DKLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             +  K +    +   F+D  LLP P + L       K ++ FRK  ++ L  AD+R+L 
Sbjct: 129 RLISFKDIATHTL---FNDEDLLPFPLTDLP------KTFSQFRKK-VEPL--ADIRNL- 175

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQ------AIDPMFPIGEQNALHILRKFCKEKV--YYY 230
           +P   L  P  P  + R  D+ F+          +F  G +  +  L+ +        Y 
Sbjct: 176 LPVCDL--PPPPRGLKR--DHTFRRELLKHQSRSIFKGGAEAGIQQLQGYFHTTAPSEYK 231

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +  +     +++LSP+L+ G LS  Q    L E          +   S+  EL+WRE+
Sbjct: 232 TVRNALDGWGNSTKLSPWLANGCLSVNQVLLALGEYEAQYSANESTYWISF--ELLWREY 289

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           ++     + +    +  I  ++K+        +Q W +G T FP+++A M+QLN  G+M 
Sbjct: 290 FQWSAYLHGARLFARDGINGSKKLNTFYSQRFMQ-WCEGSTPFPLVNALMKQLNVTGYMS 348

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R ITAS LV +L +DWR G  YF  QL+D D+ASN G WQ+ A  G D     R FN
Sbjct: 349 NRGRQITASCLVNELALDWRYGAAYFEQQLIDYDVASNWGNWQYIAGVGADPRG-GRHFN 407

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
              Q + FDP+G FI  W  E        + A
Sbjct: 408 LDKQREIFDPEGDFIAKWGGESATAEVNSVDA 439


>gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis]
          Length = 586

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 135/493 (27%), Positives = 210/493 (42%), Gaps = 55/493 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SVH  W R  LR+ DN AL AA  +    V  ++I  P       +   +  F+  SL  
Sbjct: 12  SVH--WFRRGLRLHDNPALQAAIRDG-GPVRCIYILDPWFAASSSVGINRWRFLLQSLED 68

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +  SL + G    V +      F     EW        RVT+L +    E     RD  +
Sbjct: 69  LDNSLRKLGSRLFVVRGQPTDVFPRLFKEW--------RVTRLTFEYDSEPFGKERDAAI 120

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182
            K  +   +    ++S  L     L+  +++     P      Q ++ + DL   PV +I
Sbjct: 121 VKLAKEAGVEVITENSHTL---YDLDRIIELNGHKPPLTYKRFQTIISRMDLPKKPVASI 177

Query: 183 -----RLTGPVTPSN------IPRF--FDYPFQAIDPMFPIG-EQNALHILRKFCKEKVY 228
                 +       N      +P      +P +++ P   +G E  AL  L K  + K +
Sbjct: 178 THQQMEMCKTEIQDNHDETYGVPSLEELGFPTESLAPAVWLGGETEALTRLDKHLERKAW 237

Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
             V   + P +   S       LSPYL  G LS R  + RL E +  +  +  +   S  
Sbjct: 238 --VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLY 294

Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +L+WREF+       P      G P      +I W+++   L  W +G TGFP IDA M
Sbjct: 295 GQLLWREFFYTAATNNPKFDRMEGNPICI---QIPWDRNPEALAKWAEGKTGFPWIDAIM 351

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL + W  G   F   LLD D + N+G W W + + 
Sbjct: 352 TQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNSGSWMWLSCSA 411

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453
                +F  + P   G+R DP G ++R +LP+L   P++YI+ P +  +      K  + 
Sbjct: 412 FFQ-QFFHCYCPVGFGRRTDPSGDYVRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIG 470

Query: 454 LNYPLPIVDHKKA 466
           ++YP P+V+H + 
Sbjct: 471 VDYPKPMVNHAET 483


>gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio]
 gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio]
          Length = 598

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 138/494 (27%), Positives = 211/494 (42%), Gaps = 57/494 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SVH  W R  LR+ DN AL  A + +D  V  V+I  P       +   +  F+  SL  
Sbjct: 5   SVH--WFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESLED 61

Query: 68  VQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +  SL +   +  V +      F     EW         VT+L +    E     RD  +
Sbjct: 62  LDTSLRKLNSRLFVVRGQPTDVFPRLFKEW--------NVTRLTFEYDSEPYGKERDAAI 113

Query: 124 EKRLQHRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPA 181
            K  Q   +     ++  L  P  I+    +M     P      Q +V + +L   P+P 
Sbjct: 114 IKMAQEYGVETVVRNTHTLYNPDRII----EMNNHSPPLTFKRFQAIVNRLELPRKPLPT 169

Query: 182 I------RLTGPVTPSN-----IPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKV 227
           I      R    ++ ++     +P   +  F+       +   GE  AL  L K    K 
Sbjct: 170 ITQEQMARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGETEALERLNKHLDRKA 229

Query: 228 YYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           +  V   + P I G S       LSPYL  G LS R  +  L++ F+ L  +  S   S 
Sbjct: 230 W--VANFERPRISGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLRRR-SSPPLSL 286

Query: 282 LNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
             +L+WREF+       P+     G P      +I W+ +   L  W +G TGFP IDA 
Sbjct: 287 FGQLLWREFFYTAGTNNPNFDHMEGNPIC---VQIPWDHNPEALAKWAEGRTGFPWIDAI 343

Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W + +
Sbjct: 344 MTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMWLSCS 403

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--L 452
                 +F  + P   G+R DP G +IR ++P+L + P +YI+    AP S     +  +
Sbjct: 404 AFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIV 462

Query: 453 SLNYPLPIVDHKKA 466
            ++YP P+++H ++
Sbjct: 463 GVDYPKPMINHAES 476


>gi|313212920|emb|CBY36823.1| unnamed protein product [Oikopleura dioica]
          Length = 476

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/465 (25%), Positives = 194/465 (41%), Gaps = 54/465 (11%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T  +VH  W R  LR+ DN+ALY A   S        +    Q  +   SA ++ F+   
Sbjct: 4   THRTVH--WFRKGLRLHDNEALYHAVTTSQVVFPIYILDVDWQTEKEKFSALKTRFLIEC 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + + L + G            D+   +  +C +  +T++ + +  EI    RD+ + 
Sbjct: 62  LRDLDEGLKKYGTRLYVLT----GDATTVIKKFCKENEITQMTWMKDAEIFYRERDEEIT 117

Query: 125 KRLQHR--VICKSF-------DDSVLLPPGSILNHALQ--------MYKVYTPFRKALIQ 167
           K + HR  +  KSF        D V+   G  +   L         M +   P      +
Sbjct: 118 K-VVHRMEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTVTAK 176

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
           +      + +      L   V     PR          P++  GE+ AL +L+    +  
Sbjct: 177 HFKLGSKKIIIFKKSILAFGVWGHQAPRSL--------PIYRGGERQALKVLQAKINDPT 228

Query: 228 YYYVE---QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            + +    Q     +  T+ LS Y + G +S R  W   ++        P+S       +
Sbjct: 229 LFTLNGFNQGVKTKLPHTTYLSAYQNYGCISTRHFWKAAEK-------LPESKTIMLRGQ 281

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWT-----EKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           +++REF      FY +      F          +IEW K+   L AW++G TG+P IDA 
Sbjct: 282 IMYREF------FYVAASQVNNFTKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDAV 335

Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           MRQL T G++H+  R   ASFL    L ++W  G+E F    +DGD A N G W W   +
Sbjct: 336 MRQLVTEGFIHHLNRWAVASFLTNGQLWLNWEHGQEMFEEHQIDGDYAMNAGCWMWCTGS 395

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
                   +  +P    +R+DP+G F R + PEL N+P +Y+ +P
Sbjct: 396 AFMDSISEKTLDPVKFARRWDPEGHFTRKYCPELKNMPLKYLFSP 440


>gi|261855905|ref|YP_003263188.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
           c2]
 gi|261836374|gb|ACX96141.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
           c2]
          Length = 507

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 122/483 (25%), Positives = 205/483 (42%), Gaps = 35/483 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW + DLR++D+ AL  A       V+ ++I  PE W+Q  +S RQ  F+ A L ++
Sbjct: 1   MNVVWFKRDLRLSDHTALARAA--KQGPVLLLYILEPELWQQPDMSERQFRFLTACLDEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127
           +     + I F         +++E L S   +  +T L+ +++        RD+ + +  
Sbjct: 59  KTVAQDRSIHF----VIKVGEAVEVLTSLHQKYAITALWSHQETGNGWTFARDQRVSRWC 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q+  I          P      H +           A     ++  +  LP     +  P
Sbjct: 115 QYHHI----------PWHEPAQHGVVRRLANRSGWAARWYRQMKQPIAELPPVIHSIDEP 164

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
                 P    +       +   G   AL +L  F  E+   Y      P  A +  S+L
Sbjct: 165 SDSWPSPADLGWVNAETAQIQSGGRSRALGLLHDFLHERGETYARAMSSPVTAFERCSRL 224

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-------SGAFSWLNELIWREFYRHLMAFY 298
           SP+L+ G +S R+ +  ++   + L+++P        S   S+   L W   +   +   
Sbjct: 225 SPHLAFGTVSIREVFQAVEARKLALMMQPPTERGMWPSALRSFSGRLRWHCHFIQKLEDE 284

Query: 299 PSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           P +  C   P      + E+N      +AW+ G TG+P++DA MR L   GW++ R+R +
Sbjct: 285 PRIEFCNLHPAYEGLRESEFNPA--FFEAWQAGRTGYPMVDACMRALKATGWLNFRMRAM 342

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SF    L + WR    Y      D +   +    Q    +G   +   RI+NP  QG 
Sbjct: 343 VMSFASYHLWLHWRQPALYLARMFTDYEPGIHYS--QAQMQSGTTGINTLRIYNPIKQGI 400

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             DP+G FIR W+PEL ++   +IH P  WL  +  + NYP PIVD  +A      + Y 
Sbjct: 401 DHDPEGVFIRRWVPELMDLDRTWIHTP--WLAPSPPT-NYPRPIVDEVQARKAAAEKIYQ 457

Query: 477 AKK 479
            +K
Sbjct: 458 LRK 460


>gi|260436401|ref|ZP_05790371.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH
           8109]
 gi|260414275|gb|EEX07571.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH
           8109]
          Length = 493

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 128/484 (26%), Positives = 201/484 (41%), Gaps = 53/484 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ +VW + DLRI D++ L AA       V+ +++  PE W+Q   S RQ  F   SLL+
Sbjct: 3   ALQIVWFKRDLRIVDHQPLAAAAER--GLVLPLYVVEPELWQQPDASERQWMFCRESLLE 60

Query: 68  VQKSLSQKGI--------VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VR 118
           ++++L+ +G         V Q  + +     I+ L S+  ++      Y R   +    R
Sbjct: 61  LRQALADRGQPLVVRAGDVVQVLERARRQFGIDGLWSH--EETGNGWTYQRDKRVGAWAR 118

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           R  +    +    + +          G      +QM +  TP   AL Q+L   D   +P
Sbjct: 119 RHGIAWTEIPQFGVTRQMRSRN----GWAKRWEVQMMEPITPVPAAL-QSLEGIDPGVIP 173

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP- 237
               R              + P          G    L  L  F + +   Y      P 
Sbjct: 174 ERPCR--------------ELPVDGCPQRQTGGRSIGLGELSDFLQHRASRYQRAMSSPN 219

Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            A  G S+LS YL+ G LS       ++E           G  S+ + L W   +   + 
Sbjct: 220 TAFTGCSRLSAYLTWGCLS-------MREVLQTSRTNSGRGVSSFESRLHWHCHFIQKLE 272

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P++     F P+   I    D+  L AW +G TG P +DA MR L   GW++ R+R +
Sbjct: 273 DQPAIEYSD-FHPFMRGIR-ADDAERLTAWSEGRTGVPFVDACMRALRAHGWINFRMRAM 330

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQG 415
             SF   +L + WR    +   Q +D +   +   W Q    +G+ S+   RI+NP  QG
Sbjct: 331 LMSFASYNLWLPWRDSGLHLARQFVDYEPGIH---WSQCQMQSGSTSINTIRIYNPIKQG 387

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
              DPQG FIR W PEL +VP  +IH P  W+    L    P PIVD   +     ++ +
Sbjct: 388 MDHDPQGLFIRQWCPELKDVPKIHIHEP--WM----LGGGMPPPIVDVTTSMQDAKDRIW 441

Query: 476 AAKK 479
             ++
Sbjct: 442 EVRR 445


>gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi]
 gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi]
          Length = 538

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 144/500 (28%), Positives = 219/500 (43%), Gaps = 60/500 (12%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISA 55
           M A     VH  W R  LR+ DN AL+     + A      V  +FI  P       + A
Sbjct: 1   MTAQRRTLVH--WFRKGLRVHDNPALFQIFEVARAAPEKFYVRPIFILDPGILDWMQVGA 58

Query: 56  RQSHFIYASLL---QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
            +  F+  SL    Q  ++L+ +  V +      F    E       + +V  L Y    
Sbjct: 59  NRWRFLQQSLSDLDQQLRALNTRLFVVRGKPVDIFPGLFE-------RWQVQLLTYETDI 111

Query: 113 EINEVRRDKLLEKRL--QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
           E   V RD  +++    Q   +      ++  P   I+ +  +    Y  F   +++ L 
Sbjct: 112 EPYAVLRDAAVQQLAASQGVKVDTHCSHTIYNPELVIVRNLGKPPITYQKFL-GIVEKLK 170

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDP-------MFPIGEQNALHILRK 221
              + + P        P+  S+I   +DYP   Q +          FP GE  AL  +  
Sbjct: 171 LPKVLNKPKKLPDGMQPLADSDI---YDYPTLEQLVKRPEDLGINKFPGGESEALRRMEA 227

Query: 222 FCKEK--VYYYVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
              ++  V  + + +  P      T+ LSPYL  G LS R    RL+E    L  +PK  
Sbjct: 228 SLADEQWVAKFEKPKTAPNSLEPSTTVLSPYLKFGCLSARLFHERLQE---ILARQPKHS 284

Query: 278 A--FSWLNELIWREFYRHLMAFYPSV--CMGKPF---IPWTEKIEWNKDSHLLQAWKQGY 330
               S + +L+WREFY  + A  P+    +G  +   IPW E+ E       L+AW  G 
Sbjct: 285 KPPVSLVGQLLWREFYYTVAAAEPNFDRMLGNAYCLQIPWQEQPE------HLEAWAHGR 338

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389
           TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N 
Sbjct: 339 TGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNA 398

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWL 447
           G W W +++      YFR+++P   GK+ DP+G +I+ ++PEL   P + I+ P   +  
Sbjct: 399 GNWMWLSASAFFH-QYFRVYSPVAFGKKTDPKGDYIKKYVPELAKYPAKCIYEPWKATLG 457

Query: 448 DKND----LSLNYPLPIVDH 463
           ++ D    L  +YP  IV+H
Sbjct: 458 EQRDYGCVLGSDYPHRIVNH 477


>gi|86147737|ref|ZP_01066045.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
 gi|85834518|gb|EAQ52668.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
          Length = 466

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 131/465 (28%), Positives = 210/465 (45%), Gaps = 63/465 (13%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA------TPEQWRQHGISARQSHFIY 62
           + L    NDLRI DN+ L+ A   S  K+I V +       + +  ++    A +  F+ 
Sbjct: 4   IGLYLFTNDLRINDNQLLHYAVQ-SVGKLICVIVEPTLVRFSADLAQEQSYGAHRQTFVS 62

Query: 63  ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
            S+  ++ +L + G  +V  +      D + + L      Q VT  F N     +E +  
Sbjct: 63  QSITNLESNLVKFGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFANAHCGYDERQLI 122

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSIL--NHAL--QMYKV---YTPFRKA---LIQNLV 170
             L+ R  + + C        LP  S L   H L  ++ KV   +T FRK    L  N  
Sbjct: 123 HSLQSRHPNLITC--------LPHHSTLFDQHELSFELSKVPSSFTKFRKLVEHLDVNRN 174

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNAL-HILRKFCKE 225
           +  + +LP PA+RL    T ++      +       A+   +  GE   L H+   F  +
Sbjct: 175 ETVISALP-PAVRLALTSTSTSTSTISLFSSPNDESAVISDYWGGEDAGLAHLENYFSHD 233

Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN- 283
             + Y + R+    I+ +++ SP+L++G +SP+  +  LK+   D      + +  W+  
Sbjct: 234 YAFNYKQTRNAFDGIENSTKFSPWLALGCVSPKTIYCHLKQFEAD---HGSNDSTYWIYF 290

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTE--KIEWNKDSHLLQ----AWKQGYTGFPIID 337
           EL+WRE++     ++  + +G      T   K++ +  S  L      WK G T +PI+D
Sbjct: 291 ELLWREYF-----YWKCLSLGSSLFGETSNHKLDSSNSSATLNLNLAKWKSGNTNYPIVD 345

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           A MRQLNT G+M NR R + AS L+ +L +DWR G  YF SQL+D D+ASN G W + A 
Sbjct: 346 ACMRQLNTTGYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAG 405

Query: 398 --------------TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
                           N + P  R F+   Q   +DP   FI  W
Sbjct: 406 ALRPQVSTQTNKQKNANQAQPKSRHFDLGKQTDMYDPDHAFINKW 450


>gi|148238972|ref|YP_001224359.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
 gi|147847511|emb|CAK23062.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
          Length = 490

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 128/484 (26%), Positives = 206/484 (42%), Gaps = 47/484 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW + DLR+ D++ L  A   +   V+ ++I  PE W Q   SARQ  F   SL 
Sbjct: 1   MTLQLVWFKRDLRLVDHQPLARAL--ARGPVLPLYIVEPELWSQPDCSARQWAFCRESLQ 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEK 125
            +Q++ +  G            D+++ L+    Q  V+ L+ + +        RD+ +  
Sbjct: 59  DLQQACAALGQPLIIRS----GDAVDVLERARCQLGVSALWSHEETGNAWTFVRDRRVAA 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             + R I         LP   ++            +   + + +  A     P+P I   
Sbjct: 115 WARERGIPWH-----ELPQFGVVRRLGTRRGWARRWEARMGEAMTPAPTSLTPLPGI--- 166

Query: 186 GPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240
               P ++P       ++ DP       G   AL  L  F   +V  Y      P  A  
Sbjct: 167 ---APGDLPTSEALALRS-DPCPHRQHGGRGMALQELDDFLAHRVQRYCRSISSPNLAFN 222

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S+LS Y++ G LS R+   R ++      +K + G  S+ + L W   +   +   P 
Sbjct: 223 GCSRLSAYITWGCLSMREVLQRSRD------LKGR-GVSSFTSRLHWHCHFIQKLEDQPP 275

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +   + F P+   I  + D     AW +G TG P +DA MR L   GW++ R+R +  SF
Sbjct: 276 I-EWEDFHPFMRGIR-SLDHERFAAWAEGQTGVPFVDACMRALRAHGWINFRMRAMLMSF 333

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS---TGNDSVPYFRIFNPTIQGKR 417
              +L + WR    +   Q +D        G  W+     +G+ S+   RI+NP  QG  
Sbjct: 334 ASYNLWLPWRETGLHLARQFVD-----YEPGIHWSQCQMQSGSTSINTIRIYNPIKQGMD 388

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            DP+GTFIR W PEL +VP  ++H P S      L    P PIVD  ++      + +  
Sbjct: 389 HDPEGTFIRRWCPELEDVPAVHLHEPWS------LGGTRPKPIVDCAQSAREAKERIFEI 442

Query: 478 KKQS 481
           ++ S
Sbjct: 443 RRSS 446


>gi|110637463|ref|YP_677670.1| deoxyribodipyrimidine photo-lyase type I [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110280144|gb|ABG58330.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 434

 Score =  137 bits (345), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 200/444 (45%), Gaps = 37/444 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV-------FIATPEQWRQHGISARQSH 59
           M   +VW + DLR+ DN+ L  A   SD ++I V       F  TP  +++ G    ++ 
Sbjct: 1   MKRSIVWFKTDLRLHDNETLVRAIEQSD-EIIPVYCLDEDHFKITPFGFQKTG--NFRAQ 57

Query: 60  FIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           F+  SL  +  +L + G   IV +    +     ++  +++       K+F  R+    E
Sbjct: 58  FLLESLNDLDTNLRKLGSGLIVVRGKPETELYKIVKQYEAF-------KVFAKREVAYEE 110

Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
            + +  +EK + +     +SF  S L     +      + +V+T FRK + +   ++ +R
Sbjct: 111 QQTEARVEKEIWKLGCTFESFSTSTLYHAQDLPFSIKDIPEVFTNFRKKVEK---ESSIR 167

Query: 176 SLPVPAIRLTGPVTPS-NIPRFFDYPFQAI--DP----MFPIGEQNALHILRKFCKEK-- 226
           S+      +  P  P   +P       Q +  DP     F  GE      L  +  E   
Sbjct: 168 SVFQKPAHIKSPAMPQLRLPTVKGLGLQPVIQDPRAVMKFTGGESEGCKRLTSYLFETQL 227

Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           + +Y   RD +     +++ SP+L++G LSPR+ +  LK+   +         +  + EL
Sbjct: 228 ISHYKNTRDGMIGSDYSTKFSPWLALGCLSPREIYTELKK--YESRFSANESTYWLIFEL 285

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WR+++R +M  +         I  +      +D+ +L  W  G TG   IDA M +L  
Sbjct: 286 LWRDYFRFMMKKHKHQFFLYSGIKDSANASGLQDTAILSQWINGKTGNDFIDANMLELTH 345

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R   AS+L  DL +DWR G  YF  QL+D D+ SN G W + A  GND    
Sbjct: 346 TGFMSNRGRQNAASYLCNDLGIDWRYGAAYFEQQLIDYDVCSNWGNWAYLAGVGNDPRGK 405

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWL 429
            R FN   Q + +DP+  F   WL
Sbjct: 406 -RNFNIEKQAEEYDPKKLFRNLWL 428


>gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus]
          Length = 742

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/289 (34%), Positives = 140/289 (48%), Gaps = 26/289 (8%)

Query: 206 PMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWN 261
           P++  GE  AL  L +  + K  V  +   +  P    +SQ  LSPYL  G LS R  + 
Sbjct: 234 PIWIGGENEALLRLERHLERKAWVASFGRPKMTPESLLSSQTGLSPYLRFGCLSTRLFYY 293

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKD 319
           +L E +    IK +    S   +++WREF+       P+     G P      +I W K+
Sbjct: 294 QLSELYKR--IKQERPPLSLHGQILWREFFYCAATRNPNFDRMEGNPIC---VQIPWEKN 348

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378
              L+ W  G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F  
Sbjct: 349 QEALKKWANGQTGFPWIDAIMIQLRNDGWIHHLARHAVACFLTRGDLWISWEEGMKVFDE 408

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D + N G W W  S  +    +F  + P   G++ DP G FIR ++P L N+PT+
Sbjct: 409 LLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRKYIPVLKNMPTR 467

Query: 439 YIHAPHSWLDKND--------LSLNYPLPIVDHKKACHHTLN---QYYA 476
           YIH P  W+   +        +  +YP+PIVDH KA    L    Q YA
Sbjct: 468 YIHEP--WVCPEEIQKSIRCIIGKDYPMPIVDHTKASEINLERIKQVYA 514


>gi|126662376|ref|ZP_01733375.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38]
 gi|126625755|gb|EAZ96444.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38]
          Length = 440

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 204/446 (45%), Gaps = 40/446 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ-----SHFIYASL 65
           LVW RNDLR  DN +LY AC  +D  VI ++   P  +       ++     S F+  ++
Sbjct: 10  LVWFRNDLRTIDNHSLYNACRENDT-VIGIYCLDPRHFEITPFGFKKTEKFRSQFLLETV 68

Query: 66  LQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY--EINEVRRDKL 122
            ++QK+L +K I +  Y+           +     + ++  ++   ++  E NE+ ++  
Sbjct: 69  TELQKNLLEKNIRLLVYYGYPEI-----LIPEIIAKYQIHSIYSQHEWTSEENEIEQEI- 122

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNL-VQADLRSLPVP 180
             + L   V  K+  D  L  P  +      ++ +V+T FRK + + + V+  +   P P
Sbjct: 123 --RNLISAVNWKNHYDQFLFHPADLPFEDWKKIPEVFTDFRKQIEKKIRVRPTVAISPKP 180

Query: 181 AIRLTGPVTPSNIPRFFDYPF--------QAIDPMFPI--GEQNALHILRKF---CKEKV 227
              L    TP  IP   D  F        Q     FP   GE +A   ++ +    K+  
Sbjct: 181 LTNLIEETTP--IPTLKDLGFDSEASDFKQPEKTAFPFKGGENHAKKRIKDYFWDTKKLA 238

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y   +  +     +S+LS +L+ G +S R  +  + ++F   +IK +   +  + ELIW
Sbjct: 239 VYKKTRNGLIGKNYSSKLSAWLANGSVSARTIYWEV-QKFEKKVIKNED-TYWLIFELIW 296

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R++++++   + +       I   E   WN++      W  G T    ++A M +L   G
Sbjct: 297 RDYFKYISLKHGNKIFQLNGILQKE-YHWNQNKKAFNQWANGTTPEHFVNANMIELQKTG 355

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WM NR R   AS+  K+   DWRIG  YF S L+D D+ SN G W + A  GND  P  R
Sbjct: 356 WMSNRGRQNVASYWAKEWEQDWRIGAAYFESMLIDYDVHSNYGNWMYNAGVGND--PRDR 413

Query: 408 IFNPTIQGKRFDPQGTFIRHWL-PEL 432
            FN   Q + +D  G F + WL PEL
Sbjct: 414 KFNIKRQAEMYDADGKFQKMWLIPEL 439


>gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis]
 gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis]
          Length = 532

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 207/506 (40%), Gaps = 56/506 (11%)

Query: 13  WLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           W R  LR+ DN AL    + + A      V  +F+  P       + A +  F+  SLL 
Sbjct: 11  WFRKGLRVHDNPALIQIFNKAGASPDKFSVRPIFVLDPGILDWMKVGANRWRFLQQSLLD 70

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-R 126
           + K+L +        +    D      D +     V  L +    E   V+RDK ++   
Sbjct: 71  LDKNLKELNSRLYIVRGKPVDIFPNLFDRW----NVELLTFETDIEPYAVKRDKAVQDIA 126

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             H V   +     +  P  ++        +      ++++ L    +   P    RL  
Sbjct: 127 AAHGVKVDTHCSHTIYNPEIVIAKNFGRAPITYQKFLSVVEKLKLPKVLDKPQ---RLPN 183

Query: 187 PVTP---------------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
            V P                 + +    P +     FP GE+ AL  L     ++  ++V
Sbjct: 184 GVQPIADELEMGQSDVYECPTLDQLVKRPQELGINKFPGGEREALRRLDTSLSDE--HWV 241

Query: 232 EQRDIPAIQ------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              + P          T+ LSPYL  G LS R    RL  E +    K      S + +L
Sbjct: 242 ASFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLVHQRL-HEILKRHPKHSKPPVSLVGQL 300

Query: 286 IWREFYRHLMAFYPSV--CMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           +WREFY    A  P+    +G  +   IPW E+ +       L AW  G TG+P IDA M
Sbjct: 301 LWREFYYTAAAVEPNFDRMLGNVYCLQIPWQERPD------HLDAWAHGRTGYPFIDAIM 354

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           RQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W +++ 
Sbjct: 355 RQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDHDWALNAGNWMWLSASA 414

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKND----LS 453
                YFR+++P   GK+ D  G +IR ++PEL   P   I+ P   +  D+ +    L 
Sbjct: 415 FFH-QYFRVYSPVAFGKKTDRTGAYIRKYVPELAKYPAGCIYEPWKATLADQREFGCVLG 473

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++YP  IV+H       + +  AA K
Sbjct: 474 IDYPHRIVNHDIVHKENIKRMSAAYK 499


>gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus]
 gi|81867613|sp|Q923I8|CRY2_RAT RecName: Full=Cryptochrome-2
 gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus]
          Length = 594

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 143/502 (28%), Positives = 211/502 (42%), Gaps = 61/502 (12%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F
Sbjct: 16  MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 72

Query: 61  IYASLLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINE 116
           +  SL  +  SL +   +  V +      F     EW         VT+L +    E   
Sbjct: 73  LLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFG 124

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLR 175
             RD  + K  +   +    ++S  L     L+  +++     P      Q L+ + +L 
Sbjct: 125 KERDAAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQALISRMELP 181

Query: 176 SLPVPAI------RLTGPVTPS-----NIPRF--FDYPFQAIDP-MFPIGEQNALHILRK 221
             PV A+           +  +      +P      +P + + P ++  GE  AL  L K
Sbjct: 182 KKPVGAVSSQHMENCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALVRLDK 241

Query: 222 FCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
             + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K K
Sbjct: 242 HLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYRKVK 295

Query: 276 SGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
             +    S   +L+WREF+       P      G P      +I W+++   L  W +G 
Sbjct: 296 RNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEGK 352

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389
           TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N 
Sbjct: 353 TGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNA 412

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHS 445
           G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+    AP S
Sbjct: 413 GSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPES 471

Query: 446 WLDKND--LSLNYPLPIVDHKK 465
                +  + ++YP PIV+H +
Sbjct: 472 VQKAANCIIGVDYPRPIVNHAE 493


>gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis]
          Length = 616

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 137/492 (27%), Positives = 206/492 (41%), Gaps = 48/492 (9%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW        ++TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------KITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            ++K      +      S  L     L+  +++     P      Q L+ + D   +PV 
Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVE 168

Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226
            I      + T PV+        +P   +  F        ++P GE  AL  L +  + K
Sbjct: 169 TITAEVMEKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERK 228

Query: 227 VYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +    +R        +  T+ LSPYL  G LS R  + +L + +  +  K  S   S  
Sbjct: 229 AWVANFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLY 287

Query: 283 NELIWREFYRHLMAFYPSVCMGK-PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
            +L+WREF+       P  C  K    P   +I W+++   L  W +G TGFP IDA M 
Sbjct: 288 GQLLWREFFYTAATNNP--CFDKMDGNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMT 345

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +
Sbjct: 346 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSS 404

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSL 454
               +F  + P   GKR DP G +IR +LP L   P +YI+ P +  +      K  + +
Sbjct: 405 FFQQFFHCYCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGV 464

Query: 455 NYPLPIVDHKKA 466
           NYP P+V+H +A
Sbjct: 465 NYPKPMVNHAEA 476


>gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum]
          Length = 535

 Score =  137 bits (344), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 145/297 (48%), Gaps = 37/297 (12%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ------GTSQLSPYLSIGVLSPRQCW 260
           ++P GE+ AL  L ++ K K +  V + + P          T+ LSPY+  G LS    +
Sbjct: 225 LYPGGEKEALRRLEEYMKNKTW--VCKFEKPNTSPNSLKPSTTVLSPYMKFGCLSASHFY 282

Query: 261 NRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWT 311
            RLKE   +    P S    S + +L WREFY  + A  P        S+C         
Sbjct: 283 YRLKEVIGN---SPHSKPPVSLIGQLYWREFYYTVGASTPNFDKMVGNSICC-------- 331

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWR 370
            ++ W+ +   L+AW  G TG+P IDA MRQL   GW+H+  R   A FL + DL + W 
Sbjct: 332 -QVPWDNNPDALEAWTNGKTGYPFIDAIMRQLRDEGWIHHLARHAVACFLTRGDLWISWE 390

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G   F   LLD D + N G W W +++      +FR+++P   GK+ D  G +IR ++P
Sbjct: 391 KGLAVFEELLLDADWSMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDKSGDYIRKYIP 449

Query: 431 ELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           EL   P QYI+    AP S  ++    + ++YP  +V H+    + + +   A K +
Sbjct: 450 ELAKYPDQYIYEPWSAPKSIQERAGCVVGVHYPKRVVVHEDVYKNNIAKMSLAYKST 506


>gi|321466446|gb|EFX77441.1| CRY-D [Daphnia pulex]
          Length = 525

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 196/463 (42%), Gaps = 38/463 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W R  LRI DN AL +A  NS    IA+F+               + F+   L  +
Sbjct: 1   MNVLWFRRGLRIHDNPALLSALENS-KDFIALFVFDTTFQDPGYKPYHMNGFLLECLHDL 59

Query: 69  QKSLSQKGIVFQYHQCSNFD-----DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            +SL   G      Q    +      +I+ ++  C  Q    +F+ R      +  +  +
Sbjct: 60  NESLESVGTKLHVFQGCPLEVFRHLHNIKPINKLCFIQDCEPIFHERDIAAKNLCSELDI 119

Query: 124 E--KRLQHRV-----ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           E  + + H +     I  S   +  L     ++ A+ +     P      + +    L  
Sbjct: 120 EVYEHVAHTLWDPMDIIASNGGTPPLTYEMFVHVAMSVGDPPKPVADPEWKGVKFLTLEP 179

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH--ILRKFCKEKVY---YYV 231
                  L G V   +     + P          GE NAL    +R   +E  +   +Y 
Sbjct: 180 FESNRFTLFGGVPTLSQIGVPENPVGCRGRRIFGGETNALKHFAIRLQAEETAFRSGFYQ 239

Query: 232 EQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +  P + G    LS  +S+G +S R  + R+ E F  +             ++IWR++
Sbjct: 240 PNQARPDLLGPPLSLSAAISVGAISVRLFYWRIHEIFDKVNRGNPPAWLGITGQIIWRDY 299

Query: 291 YRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           +  +    P         +C+    IPW E  E        + WK G TG+P IDA MRQ
Sbjct: 300 FYAMSRMNPKFDKEVDNPICLQ---IPWVENEE------FFEKWKNGQTGYPFIDAGMRQ 350

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           LN  GWMH+ +R   A FL + DL ++W IG EY  +QL+D D + N+G W W +S+  +
Sbjct: 351 LNQEGWMHHSVRNAVAMFLTRGDLWLNWDIGAEYMANQLVDSDWSVNSGNWMWVSSSAFE 410

Query: 402 SVPYFRI-FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
            +    +  N  + GKR +P G +IR ++PEL N   +YIH P
Sbjct: 411 RLLDCSVCINSVLYGKRLEPSGDYIRRYVPELANFEFEYIHEP 453


>gi|194900020|ref|XP_001979555.1| GG23184 [Drosophila erecta]
 gi|190651258|gb|EDV48513.1| GG23184 [Drosophila erecta]
          Length = 542

 Score =  137 bits (344), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 131/512 (25%), Positives = 228/512 (44%), Gaps = 58/512 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASL 65
             +++W R+ LR+ DN AL AA  + D  V  I VFI   E      +   +  F+  SL
Sbjct: 5   GANVIWFRHGLRLHDNPALLAALADKDQGVALIPVFIFDGESAGTKNVGYNRMRFLLDSL 64

Query: 66  L----QVQKSLSQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEV 117
                Q+Q++   +G  +VF+      F    E   L   C++Q    ++ +R   I  +
Sbjct: 65  QDIDDQLQEATDGRGRLLVFEGEPAFIFRRLHEQVRLHRLCIEQDCEPIWNHRDETIRAL 124

Query: 118 RRDKLLE--KRLQHRVICKSF--DDSVLLPPGS--ILNHALQMYKVYTPFRKALIQNLVQ 171
            R+  ++  +++ H +       + +  +PP +  +  H +Q+  +  P R      L  
Sbjct: 125 CRELGIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQI--IGLPPRPTADARLED 182

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKV 227
           A    L     R          P  F+     +  +  I    GE+ AL +L +  K + 
Sbjct: 183 ATFVELDPEFRRSINMFEKLPTPHHFNVYEDNMGFLAKIKWRGGEKQALLLLGERLKVEQ 242

Query: 228 Y-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------K 275
           +     +Y+  + +P I  + + +S +L  G LS R+ +  + + F ++ ++        
Sbjct: 243 HAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQM 302

Query: 276 SGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQAWK 327
           +G      +LIWRE++  +    P+        +C+    IPW +  E      LLQ W+
Sbjct: 303 TGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLS---IPWAKPKE-----DLLQRWR 354

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386
            G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +
Sbjct: 355 LGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWS 414

Query: 387 SNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
              G W W +S+  + +    +   P    KR DP GT+I+ ++PEL  VP +++H P  
Sbjct: 415 VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELVKVPKEFVHEPWR 474

Query: 446 WLDKND------LSLNYPLPIVDHKKACHHTL 471
              +        + ++YP  I+D   A    +
Sbjct: 475 MSAEQQEQYECLIGVHYPERIIDLTMAVQRNM 506


>gi|294084365|ref|YP_003551123.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663938|gb|ADE39039.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 515

 Score =  136 bits (343), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 126/493 (25%), Positives = 201/493 (40%), Gaps = 48/493 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +H+VW + DLR+ D+  L AA  ++   V+ +++  P  W Q  +S R   F+  +L  +
Sbjct: 1   MHVVWFKKDLRVWDHAPLVAA--SAAGAVLPIYVVEPALWAQPDMSYRHYAFLGETLASL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            +SL++ G     +      D    L     +  +T L     Y   E        + L 
Sbjct: 59  DESLTKLGQPLVIYA----GDMPSVLAGIHQKYGITAL-----YSHEETGNGWTYARDLA 109

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-----ALIQNLVQADLRSLPVPAIR 183
            +  CK               H    Y V+ P R           ++QAD+    VPA  
Sbjct: 110 VQEWCKDH---------HCPWHEFAQYGVHRPLRSRRGWAGKWDKMMQADV----VPAPD 156

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKF--CKEKVYYYVEQRDIP 237
               V    +P         +D         G   A+ +L+ F   + + Y Y     + 
Sbjct: 157 HLSSVGIKGVPLPSASALGLVDDECNERQKGGRNEAIALLKSFLASRGQKYRYEMSSPVT 216

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A    S+LS +L+ G +S R+ +   +   + +         +W N L   E   H    
Sbjct: 217 AADSCSRLSAHLAFGAVSLREVFQASRRRQMAIRDSGTGNKRAWQNALKSFESRLHWHCH 276

Query: 298 YPSVCMGKP---FIPWTEKIEWNKDSHL-----LQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +      +P   F P+    E    +H      L AW +G TG+P++DA MR L   GW+
Sbjct: 277 FMQKLEDEPAIEFRPFHSAYESLDKTHADAASRLTAWVEGRTGYPLVDAVMRSLTATGWL 336

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
             R+R +T SF    L +DWR    +     +D +   +    Q    +G   +   RI+
Sbjct: 337 TFRMRAMTMSFASYHLWLDWRSPARHLARSFIDYEPGIHYS--QCQMQSGITGINTIRIY 394

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
           NP  Q +  DPQG FIR W+PEL ++    IH P  W+ + D + +YP PIVD K A   
Sbjct: 395 NPIKQSQDQDPQGIFIRRWVPELRHISDNLIHTP--WI-RPDQAPDYPAPIVDEKIARKS 451

Query: 470 TLNQYYAAKKQSL 482
              Q +  +K S+
Sbjct: 452 ASQQMHDIRKSSM 464


>gi|157104635|ref|XP_001648498.1| DNA photolyase [Aedes aegypti]
 gi|122106526|sp|Q17DK5|CRY1_AEDAE RecName: Full=Cryptochrome-1
 gi|108880271|gb|EAT44496.1| DNA photolyase [Aedes aegypti]
          Length = 545

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 131/517 (25%), Positives = 222/517 (42%), Gaps = 56/517 (10%)

Query: 10  HLVWLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +++W R+ LR+ DN +L  A  N        ++  +FI   E      +   +  F+  S
Sbjct: 5   NILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKFLLES 64

Query: 65  LLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLD--SYCLQQRVTKLFYNRQYEINEVRR 119
           L  + + L + G    VF+ +  +      E L+    C +Q    ++  R   I  + R
Sbjct: 65  LADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDCEPIWKARDDAIQNLCR 124

Query: 120 DKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYK-----VYTPFRKALIQNLVQAD 173
             +++ +   +V    +D   ++   G I     QM+      +  P R     +    +
Sbjct: 125 --MMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTVDIIGKPPRPVAAPSFEFVE 182

Query: 174 LRSLP---VPAIRL--TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV- 227
             S+P      ++L     ++P +   +++         +  GE  AL  L    K++  
Sbjct: 183 FGSIPSILAQEVKLQQVRNLSPEDFGIYYEGNPDISHQQWMGGETKALECLGHRLKQEEE 242

Query: 228 -----YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ---CWNRLKEEFVDLLIKPKSGAF 279
                Y+   Q     +   + +S  L  G LS R    C + L E+          G  
Sbjct: 243 AFLGGYFLPTQAKPEFLVPPTSMSAALRFGCLSVRMFYWCVHDLYEKVQANNQYRNPGGQ 302

Query: 280 SWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
               +LIWRE++  +    P         +C+    IPW E     KD  L   WK+G T
Sbjct: 303 HITGQLIWREYFYTMSVHNPHYAEMEANPICLN---IPWYEP----KDDSL-DRWKEGRT 354

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNG 390
           GFP+IDAAMRQL   GW+H+ LR ITA+FL +  L + W  G ++F+  LLD D +   G
Sbjct: 355 GFPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLKYLLDADWSVCAG 414

Query: 391 GWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLD 448
            W W +S+  +  +      +P    +R DP+G ++R +LPEL N+PT Y+H P  + LD
Sbjct: 415 NWMWVSSSAFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELKNLPTLYVHEPWKAPLD 474

Query: 449 KND-----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                   +  +YP P++D   A     N   + +++
Sbjct: 475 VQKECGCIVGRDYPAPMIDLAAASRANANTMNSIRQK 511


>gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis]
          Length = 570

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 213/503 (42%), Gaps = 55/503 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  SVH  W R  LR+ DN AL AA   +++ V  V+I  P           +  F+  S
Sbjct: 6   SVSSVH--WFRKGLRLHDNPALLAALRGANS-VRCVYILDPWFAASSSGGVNRWRFLLQS 62

Query: 65  LLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           L  +  SL +   +  V +      F     EW         V++L +    E     RD
Sbjct: 63  LEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEW--------GVSRLTFEYDSEPFGKERD 114

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179
            ++ K  +   +    ++S  L     L+  +++     P      Q ++ + +L   P 
Sbjct: 115 AVIMKLAKEAGVEVIVENSHTL---YDLDRVIELNGHSPPLTYKRFQAIISRMELPRRPA 171

Query: 180 PAI-RLTGPVTPSNIPRFFD--YPFQAIDPM-----------FPIGEQNALHILRKFCKE 225
           P++ R       + I R  D  Y   +++ +           +P GE  AL  L +  + 
Sbjct: 172 PSVTRQQMEACRAEIKRNHDETYGVPSLEELGFHSENKGHAIWPGGETEALARLDRHLER 231

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + RL +E    + K      
Sbjct: 232 KAW--VANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYYRL-QELYQKVKKNSPPPL 288

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 289 SLYGQLLWREFFYTAATNNPKFDQMEGNPI---CVQIPWDKNPKALAKWTEGKTGFPWID 345

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL   W  G + F   LLD D + N G W W +
Sbjct: 346 AIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLS 405

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KN 450
            +      +F  + P   G+R DP G +++ +LP L   P++YI+ P S  +      K 
Sbjct: 406 CSAFFQQ-FFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYIYEPWSAPESVQKEAKC 464

Query: 451 DLSLNYPLPIVDHKKACHHTLNQ 473
            + ++YP PIV+H +A    + +
Sbjct: 465 IIGIDYPKPIVNHAEASRMNIER 487


>gi|323335406|gb|EGA76693.1| Phr1p [Saccharomyces cerevisiae Vin13]
          Length = 357

 Score =  136 bits (342), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 163/340 (47%), Gaps = 29/340 (8%)

Query: 60  FIYASLLQVQKSLSQKGI---VFQYHQ----CSNFDDSIEWLDSYCLQQRV---TKLFYN 109
           FI  +L  +Q+SL++  I   ++++H      SN  + +E+    C+       T +  N
Sbjct: 9   FIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITAN 68

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
            +Y+ +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K  +  +
Sbjct: 69  IEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYV 128

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-------------MFPIGEQNAL 216
                 +  +  + +  P+  +    F   PFQ   P             +  + E+ AL
Sbjct: 129 NNYKKSTSEICHLHIIEPLKYNET--FELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAAL 186

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLI 272
             L+ F   K   Y  ++D+  + GTS LS Y++ G +S R    Q +     + +   +
Sbjct: 187 SRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKAL 246

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
           K  S   +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  G TG
Sbjct: 247 KDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTG 306

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            PI+DA MR+L   G+++NR RMITASFL K L+    +G
Sbjct: 307 IPIVDAIMRKLLYTGYINNRSRMITASFLSKKLINRLEMG 346


>gi|147906624|ref|NP_001081421.1| 6-4 photolyase [Xenopus laevis]
 gi|8809676|dbj|BAA97126.1| 6-4 photolyase [Xenopus laevis]
 gi|213625040|gb|AAI69683.1| 6-4 photolyase [Xenopus laevis]
 gi|213627768|gb|AAI69685.1| 6-4 photolyase [Xenopus laevis]
          Length = 526

 Score =  136 bits (342), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 135/502 (26%), Positives = 217/502 (43%), Gaps = 52/502 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+H  W R  LR+ DN AL AA  +  A++  +FI  P   +   +S  +  F+  +L  
Sbjct: 5   SIH--WFRKGLRLHDNPALLAAMKDC-AELHPIFILDPWFPKNMQVSVNRWRFLIDALKD 61

Query: 68  VQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           + ++L +   +  V +      F    +       + +VT+L +    E    +RD  +E
Sbjct: 62  LDENLKKINSRLFVVRGKPAEVFPLLFK-------KWKVTRLTFEVDIEPYSRQRDAEVE 114

Query: 125 K-RLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           K   +H V + +   +++      I  +  +    Y  F+  L    +    R +  P +
Sbjct: 115 KLAAEHDVQVIQKVSNTLYDIDRIIAENNGKPPLTYVRFQTVLAP--LGPPKRPIKAPTL 172

Query: 183 R-LTGPVTP--SNIPRFFDYPFQ---AIDPM------FPIGEQNALHILRKFCKEKV--- 227
             +    TP  S+    +  P       DPM      +P GE  AL  L    K      
Sbjct: 173 ENMKDCHTPWKSSYDEKYGVPTLEELGQDPMKLGPHLYPGGESEALSRLDLHMKRTSWVC 232

Query: 228 -YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
            +   E         T+ LSPY+  G LS R  W ++ + +     K      S   +L+
Sbjct: 233 NFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWWKIADIYQGK--KHSDPPVSLHGQLL 290

Query: 287 WREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           WREFY    A  P+     G P      +++W+ +   L+AW +G TG+P IDA M QL 
Sbjct: 291 WREFYYTTGAGIPNFNKMEGNPVC---VQVDWDNNKEHLEAWSEGRTGYPFIDAIMTQLR 347

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           T GW+H+  R   A FL + DL + W  G++ F   LLD D + N G W W +++     
Sbjct: 348 TEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWLWLSASAFFHQ 407

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--------SLN 455
            +FR+++P   GK+ D  G +I+ +LP L   P +YI+ P  W     L          +
Sbjct: 408 -FFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPAEYIYEP--WKSPRSLQERAGCIIGKD 464

Query: 456 YPLPIVDHKKACHHTLNQYYAA 477
           YP PIV+H       + +  AA
Sbjct: 465 YPKPIVEHNVVSKQNIQRMKAA 486


>gi|332534683|ref|ZP_08410514.1| deoxyribodipyrimidine photolyase, single-strand-specific
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035895|gb|EGI72377.1| deoxyribodipyrimidine photolyase, single-strand-specific
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 435

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 202/432 (46%), Gaps = 36/432 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYASL 65
           L WL+NDLR+TDN A+++   +    +  VF+  P       ++Q      +  F+  SL
Sbjct: 6   LYWLQNDLRLTDN-AIFSDLASQQCALDIVFVINPHWFKNNNYQQKSYGVHKQQFLMQSL 64

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++Q++L ++G      +     + +  L +   +Q + ++ Y+ Q+ + E R+  LL+ 
Sbjct: 65  YELQQALIERGQTLHVLE----GEPVSVLKARINEQNIDEVVYSEQFGLYEQRQINLLKA 120

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
              +     +  D+ L     +     ++ K +TPFRK       + +  + P+    L 
Sbjct: 121 HCPNVRFTGAQQDT-LFKQSDLPFDLSELPKHFTPFRK-------KVEAATSPISLSTLP 172

Query: 186 GPVTPSNIPRFFDYPFQAI--DPMFPIGEQNALHILRKFCKEKV--YYYVEQRDIPAIQG 241
             + P  I      P + I  + +   G ++A   L ++    +   Y + + ++     
Sbjct: 173 NGLLPQPITLCAKKPLERIANNGVMHGGFKSAQTHLEQYFSGLLPSTYKITRNELDGFNN 232

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFYPS 300
           T++ S +L+ G +S RQ +  + E +    I  +S    W+  EL+WRE+++     + +
Sbjct: 233 TTKFSTWLAFGCVSARQVYKAV-EAYEHNQITNESTY--WIKFELLWREYFK-----WHA 284

Query: 301 VCMGKPFIPWTEKIEWNKDSHLL----QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +  GK    +  + +    +  +     AW  G T +P+++A M +LN  G++ NR R I
Sbjct: 285 LKAGKSLFSFKGQKQTKPLTTFMPNRFAAWCNGSTPYPLVNAIMNELNATGYISNRSRQI 344

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS LV +L +DWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   Q  
Sbjct: 345 AASCLVNELGLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRG-GRHFNIEKQTL 403

Query: 417 RFDPQGTFIRHW 428
           +FDP   +   W
Sbjct: 404 QFDPHAVYTNKW 415


>gi|195148599|ref|XP_002015258.1| GL19603 [Drosophila persimilis]
 gi|194107211|gb|EDW29254.1| GL19603 [Drosophila persimilis]
          Length = 303

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/247 (35%), Positives = 127/247 (51%), Gaps = 14/247 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           T+ LSPYL  G LS R    +LK   +    K      S + +L+WREFY  + A  P+ 
Sbjct: 28  TTVLSPYLKFGCLSARIFHQQLKA-ILKRQSKHSQPPVSLIGQLLWREFYYTVAAAEPNF 86

Query: 302 --CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              +G  +     +I W + +  L+AW  G TG+P IDA MRQL   GW+H+  R   A 
Sbjct: 87  DRMLGNVY---CLQIPWQEQADHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVAC 143

Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           FL + DL + W  G+  F   LLD D A N G W W +++      YFR+++P   GK+ 
Sbjct: 144 FLTRGDLWISWEAGQRVFEQLLLDQDWALNAGNWMWLSASAFFH-QYFRVYSPVAFGKKT 202

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKND----LSLNYPLPIVDHKKACHHTLN 472
           DPQG +IR ++PEL   P   I+ P   +  D+ +    L ++YP  IV H+      + 
Sbjct: 203 DPQGHYIRKYVPELAKYPNGCIYEPWKATLADQREYGCVLGVDYPHRIVKHELVHKENIK 262

Query: 473 QYYAAKK 479
           +  AA K
Sbjct: 263 RMSAAYK 269


>gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus]
          Length = 534

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 221/494 (44%), Gaps = 48/494 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           +  +++W R+ LR+ DN +L++A  ++ +    +FI   E      +   +  ++  +L 
Sbjct: 2   LGGNVIWFRHGLRLHDNPSLHSALEDASSPFFPIFIFDGETAGTKMVGYNRMRYLLEALN 61

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIE--WLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            + +   + G   ++ +      F    E   + + C +Q    ++  R   +  + RD 
Sbjct: 62  DLDQQFRKYGGKLLMIKGRPDLIFRRLWEEFGIRTLCFEQDCEPIWRPRDASVRALCRDI 121

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-----VYTPFRKALIQNLVQADLRS 176
            +  R +H        D+V+   G I     QM+      +  P R     +L   +  S
Sbjct: 122 GVSCR-EHVAHTLWNPDTVIKANGGIPPLTYQMFLHTVEIIGNPPRPVDDVDLNGVNFGS 180

Query: 177 LPVPAIR----LTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRK--------FC 223
           LP    R          P ++  F +   + I  +  +G E  AL  +++        FC
Sbjct: 181 LPESFYREFVVFDKAPKPEDLGVFLEN--EDIRMIRWVGGETAALKQMQERLAVEYETFC 238

Query: 224 KEKVYYYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +     Y+     P + G    LSP L  G LS R+ +  L++ F  +     +      
Sbjct: 239 RGS---YLPTHGNPDLLGPPISLSPALRFGCLSVRRFYWSLQDLFQQVHQGRLASTQFIT 295

Query: 283 NELIWREFYRHLMAFYPSVCM--GKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
            +LIWRE++  +    P+     G P    IPW E      ++  LQ WK+G TGFP +D
Sbjct: 296 GQLIWREYFYTMSVNNPNYAQMSGNPICLDIPWKEP-----ENDELQRWKEGRTGFPFVD 350

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           AAMRQL T GW+H+ +R   ASFL +  L + W  G ++F+  LLD D +   G W W +
Sbjct: 351 AAMRQLRTEGWLHHVVRNTVASFLTRGTLWLSWEHGLQHFLKYLLDADWSVCAGNWMWVS 410

Query: 397 STGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLDKND--- 451
           S+  ++ +       P   G+R +P G ++R ++PEL  +P +YI+ P  + L+  +   
Sbjct: 411 SSAFEALLDSGECACPVRLGRRLEPTGHYVRRYVPELARMPGEYIYEPWRAPLEVQEAAG 470

Query: 452 --LSLNYPLPIVDH 463
             +  +YP P+VDH
Sbjct: 471 CVIGRDYPAPVVDH 484


>gi|326793764|ref|YP_004311584.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1]
 gi|326544528|gb|ADZ89748.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1]
          Length = 458

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 194/440 (44%), Gaps = 33/440 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS+ ++W  +DLRI DN  LY A    D ++I ++ ++P+          +S    ++  
Sbjct: 1   MSMGIIWFGDDLRINDNSLLYQASREVD-RLICLYCSSPDDNNVDNSDPIRSSNTPSTFD 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIE------WLDSYCLQQRVTKLFYNRQYEINEVRRD 120
                 S+   +F++    + D S+       W+ S       T  F   +Y I  + R 
Sbjct: 60  NTSIKPSEHRTLFRHMGALDLDHSLRRLHNKLWVSSK--NASATIEFLVSKYPITHIYRH 117

Query: 121 ---KLLEKRLQHRVICKSFDDSVLLPPGSIL--NHAL-----QMYKVYTPFRKALIQNLV 170
               + E     ++  +  D   +   G  L   HAL     ++ + +T FRK     LV
Sbjct: 118 HHAGINEATTLTKLQARYTDIRWITEYGLTLFSRHALPFSLNELPESFTKFRK-----LV 172

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYP---FQAIDPMFPIGEQNA-LHILRKFCKEK 226
           +       + A+    P    N P     P   F      F  GE  A  H+   F    
Sbjct: 173 ETIDVPKTIKAVDRLPPPVAINSPYVKTLPHTSFALDGSPFVGGESYAHAHLADYFSSGA 232

Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              Y E R+ +     +++ SP+L+ G +SPRQ  N L   F +  +      +    EL
Sbjct: 233 ASTYKETRNTMDDWMSSTKFSPWLAQGAISPRQVMNSLA--FYESRMGSNDSTYWIYFEL 290

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WRE+++     Y +    K  I   + +  +  +   + W  G T FPI++AAM+QLNT
Sbjct: 291 LWREYFQWYSMKYGARLFSKSGIH-NKTLNSSFYAERFRKWCAGSTPFPIVNAAMKQLNT 349

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G++ NR R + AS L+ DL +DWR G  YF SQL+D D+ASN G WQ+ A  G D    
Sbjct: 350 TGYISNRARQLAASSLIYDLEIDWRYGATYFESQLIDFDVASNWGNWQYIAGVGADPRG- 408

Query: 406 FRIFNPTIQGKRFDPQGTFI 425
            R FN   Q + +DP   FI
Sbjct: 409 GRHFNLDKQTQLYDPDKAFI 428


>gi|298208129|ref|YP_003716308.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559]
 gi|83848050|gb|EAP85920.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559]
          Length = 421

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 195/426 (45%), Gaps = 26/426 (6%)

Query: 20  ITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFIYASLLQVQKSLSQ 74
           + DN  L  A  N++  VIAV+   P  +       +     ++ F+  ++  ++++L +
Sbjct: 1   MNDNAVLNHAVANNNP-VIAVYCFDPRHFTTTTFGFKKTGPYRAQFLIETIKNLKETLKE 59

Query: 75  KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVIC 133
           K I        +       + +      ++ ++Y +++   E   + L+++ ++   V  
Sbjct: 60  KNITL----VVSLTKPEHCISTLVKNHNISAVYYQKEWTQEEQEVEHLVKESIKTSEVTL 115

Query: 134 KSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192
            S+ D  L  P  I  +   ++ K+YT FRKA  +  V   L +L +   +         
Sbjct: 116 HSYYDQFLFHPKDIPFSSINEIPKIYTAFRKACEKKAVVRPLVNLEINLPKTNLLNEDYA 175

Query: 193 IPRFFDYPFQAI----DPMFPI--GEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTS 243
           IP+  D+         +  FP   GE   L  + ++      +  Y E R+ +   + +S
Sbjct: 176 IPKLKDFGLSEFTVHPNTAFPYKGGETEGLKRINEYHWDTNHIASYKETRNGMIGSEYSS 235

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           + S +L+ G +S RQ +  +K+   +  +K     +  + ELIWR+++ ++   Y +   
Sbjct: 236 KYSAWLANGSISARQIYWDIKD--YEKKVKKNQSTYWMIFELIWRDYFMYISLKYGNSIF 293

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               I  ++   WNK    L+ W  G T +  ++A M +L   GWM NR R   AS+  K
Sbjct: 294 KLNGIL-SKDYNWNKSKSALKQWINGTTPYDFVNANMIELKETGWMSNRGRQNVASYWAK 352

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L  DWRIG  YF S L+D D+ SN G W + A  GND  P  R FN  +Q KR+DP   
Sbjct: 353 ELQQDWRIGASYFESLLIDYDVHSNYGNWMYNAGVGND--PRDRKFNIQLQAKRYDPNRE 410

Query: 424 FIRHWL 429
           + + WL
Sbjct: 411 YRKLWL 416


>gi|284506737|dbj|BAI67362.1| cryptochrome [Bactrocera cucurbitae]
          Length = 547

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 142/530 (26%), Positives = 226/530 (42%), Gaps = 70/530 (13%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLL 66
            +++W R+ LR+ DN AL  A  +    +  I +FI   E      +   +  F+  SL 
Sbjct: 5   ANVLWFRHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLA 64

Query: 67  QVQKSL---------SQKGIVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEIN 115
            + K L         S K  +FQ +  + F    E+  L+  C +Q    ++  R   + 
Sbjct: 65  DIDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDDSVR 124

Query: 116 EVRRDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            +  D  L+     +V    +D  +V+   G I     QM+           + +   D 
Sbjct: 125 SLCND--LDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVEIIGVPPRPVEDPDW 182

Query: 175 RSLPVPAIRLTGPV-----------TPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKF 222
               V  ++LT  +           TP +   + D         +  GEQ AL H+  + 
Sbjct: 183 DG--VEFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALLHLDERL 240

Query: 223 CKEK-----VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--- 274
             E+      YY   Q +   ++    +S +L  G LS R+ + R+ + F  + I+    
Sbjct: 241 KVEERAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWRVHDLFKHVQIEALRQ 300

Query: 275 ---KSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLL 323
               +G      +LIWRE++  +    P        ++C+    IPW      NK+   L
Sbjct: 301 RVHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEGNAICLN---IPWAAP---NKEQ--L 352

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLD 382
           Q+W+ G TGFP+IDAAMRQL   GW+H+ LR   A+FL +  L   W  G   F+  LLD
Sbjct: 353 QSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRXALWQSWEHGLRXFLXYLLD 412

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
            D +   G W W +S+  + +    + + P    KR DP+G +IR ++PEL NVP +YIH
Sbjct: 413 ADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRXYVPELANVPQEYIH 472

Query: 442 APHSWLDKNDLSLN--------YPLPIVDHKKACHHTLNQYYAAKKQSLL 483
            P  W    +L  N        YP  IVD  K     ++      +QSL+
Sbjct: 473 EP--WRMPQELQENCECVIGVQYPERIVDLAKVSKRNVHAMQTL-RQSLI 519


>gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis]
 gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis]
          Length = 568

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 212/496 (42%), Gaps = 55/496 (11%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  SVH  W R  LR+ DN AL +A   +++ V  V+I  P           +  F+  S
Sbjct: 6   SVSSVH--WFRKGLRLHDNPALLSALRGANS-VRCVYILDPWFAASSSGGVNRWRFLLQS 62

Query: 65  LLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           L  +  SL +   +  V +      F     EW         V++L +    E     RD
Sbjct: 63  LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVSRLTFEYDSEPFGKERD 114

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179
            ++ K  +   +    ++S  L     L+  +++     P      Q ++ + ++   P 
Sbjct: 115 AVIMKLAKEGGVEVVVENSHTL---YDLDRIIELNGHSPPLTYKRFQAIISRMEIPRRPA 171

Query: 180 PAI-RLTGPVTPSNIPRFFD--YPFQAIDPM-----------FPIGEQNALHILRKFCKE 225
           P++ R       + I R  D  Y   +++ +           +P GE  AL  L +  + 
Sbjct: 172 PSVTRQQMEACRAEIKRNHDETYGVPSLEELGFHRENKGSAIWPGGETEALARLDRHLER 231

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS +  + RL+E +  +  K      
Sbjct: 232 KAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCKLFYYRLQELYRKVK-KNNPPPL 288

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 289 SLFGQLLWREFFYTAATNNPKFDQMEGNPI---CVQIPWDKNPKALAKWAEGKTGFPWID 345

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL   W  G + F   LLD D + N G W W +
Sbjct: 346 AIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMWLS 405

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KN 450
            +      +F  + P   G+R DP G FIR +LP L   P++YI+ P S  +      K 
Sbjct: 406 CSAFFQQ-FFHCYCPVGFGRRTDPNGDFIRRYLPVLKAFPSRYIYEPWSAPESVQKQAKC 464

Query: 451 DLSLNYPLPIVDHKKA 466
            + ++YP PIV+H +A
Sbjct: 465 IIGIDYPKPIVNHAEA 480


>gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti]
 gi|108883518|gb|EAT47743.1| DNA photolyase [Aedes aegypti]
          Length = 553

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 137/518 (26%), Positives = 217/518 (41%), Gaps = 77/518 (14%)

Query: 13  WLRNDLRITDNKALYAA---CHNSDAK--VIAVFIATPE--QWRQHGISARQSHFIYASL 65
           W R  LR+ DN AL AA   C +S  +  +  VFI  P   QW + G    +  F+  +L
Sbjct: 10  WFRKGLRLHDNPALLAAIRRCRDSPQQYALRPVFILDPAIVQWLRVG--PNRWRFLQQTL 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + ++L +        + +  D   +    +     V+ L +    E   ++RD  +E+
Sbjct: 68  ADLDRNLRKINSRLYVVRGNPVDVFPKLFQEW----NVSFLTFEHDIEPYSIKRDATVEE 123

Query: 126 RLQHRVICKSFDDSVLL-PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           + +   +    + S+ +  P +IL             R  L      +   +L +P    
Sbjct: 124 QAKKHGVKIQIEKSLTIYDPDAILK--------MNAGRPPLTYQKYGSLASTLKIPEPVA 175

Query: 185 TGPVTPSN-IPR----------FFDYPF---------QAIDPMFPIGEQNALHILRKFCK 224
           T    PS+ +P+           +D P             +  FP GE  AL  L    K
Sbjct: 176 TPKEIPSDCVPKQDSNERKRANCYDPPLLVELGVKEEDLGECKFPGGETEALRRLEDHMK 235

Query: 225 EKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            K +    ++   +       T+ LSPY+  G LS R     L  + V    K      S
Sbjct: 236 RKSWVCSFEKPNTSPNSLEPSTTVLSPYVKFGCLSARLFMREL--QTVIKGQKHSQPPVS 293

Query: 281 WLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
            + +L+WREFY    A  P        S+C+  P         W+ +   L+AW  G TG
Sbjct: 294 LIGQLMWREFYYCAAADEPNFDKMVGNSICLHVP---------WDSNKEFLEAWTHGRTG 344

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           +P IDA MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G 
Sbjct: 345 YPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEEFLLDADWALNAGN 404

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           W W +++      YFR+++P   GK+ DP+G FI+ ++PEL   P+  I+ P  W    D
Sbjct: 405 WMWLSASAFFHQ-YFRVYSPVAFGKKTDPEGKFIKKYVPELAKYPSGIIYEP--WKASVD 461

Query: 452 --------LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
                   +  +YP  IV H++     + +   A +++
Sbjct: 462 VQKKLGCIIGKDYPNRIVIHEEIHKKNIQKMTEAYRKN 499


>gi|118594165|ref|ZP_01551512.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium
           HTCC2181]
 gi|118439943|gb|EAV46570.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium
           HTCC2181]
          Length = 426

 Score =  135 bits (341), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 204/450 (45%), Gaps = 60/450 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSH---FIY 62
           + W RNDLR+ DN AL +A +NSD  ++ V I         +W+    S R  H   F+Y
Sbjct: 4   IYWFRNDLRLEDNAALNSALNNSD-HILFVHIDDDMNDAECEWQ---FSRRGQHRKIFMY 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L ++Q +L   G     H  + F      +     Q+ + +      + IN V  + +
Sbjct: 60  QGLEELQLNLKSYG-----HHLNRFVGKTNLI----FQELINR------HHINSVYCESI 104

Query: 123 --LEKRLQHRVICK------SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
              E++ Q R+I +      S+  S +  P  +      +  V+T FRK +    +    
Sbjct: 105 NAFEEQAQERLIKELGVNLYSYYQSSMYMPHQLPFDIKDLPDVFTHFRKNIETTGI---- 160

Query: 175 RSLPVPAIRLTGPV--------TPSNIPRFF--DYP---FQAIDPMFPIGEQNA-LHILR 220
             +P   I L+G +        + +N+ +    DY    F   D  F  GE+ A LHI +
Sbjct: 161 --VPEEPIALSGQIKNTIPILDSKTNLTQELTEDYSQSSFPISDKKFKGGERTAQLHIDQ 218

Query: 221 KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
            F  +    Y   R+ +  I+ +++ SP+LS+G +S  Q ++ LK    +         +
Sbjct: 219 YFQSDYPNSYKYSRNNLMGIECSTKFSPWLSLGFISANQIYSALKR--YEQRNSANDSTY 276

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
               EL+WR+++R L   Y  +   K  +  + K  +  +      WK G T    I+A 
Sbjct: 277 WIYFELLWRDYFRFLFMKYGKIFFYKNGLGLSNK-SFQHNEEKFNEWKNGKTPSSFINAG 335

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           + +LN  G++ NR+R I AS+LV +L  DWR G  +F  QL+D D+ SN G W + A  G
Sbjct: 336 ISELNQTGFISNRMRQILASYLVNELACDWRAGAAWFEHQLIDYDVYSNYGNWSYIAGVG 395

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
            D     R FN   Q   +DP G++ + W+
Sbjct: 396 TDPRG-GRHFNVDKQKNTYDPDGSYEKEWI 424


>gi|160335010|gb|ABX24913.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335012|gb|ABX24914.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335016|gb|ABX24916.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335018|gb|ABX24917.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335020|gb|ABX24918.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335022|gb|ABX24919.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335024|gb|ABX24920.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335026|gb|ABX24921.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335028|gb|ABX24922.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335030|gb|ABX24923.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335032|gb|ABX24924.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335034|gb|ABX24925.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335036|gb|ABX24926.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335038|gb|ABX24927.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335040|gb|ABX24928.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335042|gb|ABX24929.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335044|gb|ABX24930.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335046|gb|ABX24931.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335048|gb|ABX24932.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335050|gb|ABX24933.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335052|gb|ABX24934.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335056|gb|ABX24936.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335058|gb|ABX24937.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335060|gb|ABX24938.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335062|gb|ABX24939.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335064|gb|ABX24940.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335066|gb|ABX24941.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335070|gb|ABX24943.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335072|gb|ABX24944.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335074|gb|ABX24945.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335076|gb|ABX24946.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335078|gb|ABX24947.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335080|gb|ABX24948.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335082|gb|ABX24949.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335084|gb|ABX24950.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335086|gb|ABX24951.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335088|gb|ABX24952.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335090|gb|ABX24953.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335092|gb|ABX24954.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335094|gb|ABX24955.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335096|gb|ABX24956.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335098|gb|ABX24957.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335100|gb|ABX24958.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335102|gb|ABX24959.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335104|gb|ABX24960.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335106|gb|ABX24961.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335108|gb|ABX24962.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335110|gb|ABX24963.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335112|gb|ABX24964.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335114|gb|ABX24965.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335116|gb|ABX24966.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335118|gb|ABX24967.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335120|gb|ABX24968.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335122|gb|ABX24969.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335124|gb|ABX24970.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335126|gb|ABX24971.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335128|gb|ABX24972.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335130|gb|ABX24973.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335132|gb|ABX24974.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335134|gb|ABX24975.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335136|gb|ABX24976.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335138|gb|ABX24977.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335140|gb|ABX24978.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335142|gb|ABX24979.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335144|gb|ABX24980.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335146|gb|ABX24981.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335148|gb|ABX24982.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335150|gb|ABX24983.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335154|gb|ABX24985.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335156|gb|ABX24986.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335158|gb|ABX24987.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335160|gb|ABX24988.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335162|gb|ABX24989.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335164|gb|ABX24990.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335166|gb|ABX24991.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335168|gb|ABX24992.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335170|gb|ABX24993.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335172|gb|ABX24994.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335174|gb|ABX24995.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335176|gb|ABX24996.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335178|gb|ABX24997.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335180|gb|ABX24998.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335182|gb|ABX24999.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335184|gb|ABX25000.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335186|gb|ABX25001.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335188|gb|ABX25002.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335190|gb|ABX25003.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047496|gb|ACX54507.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047498|gb|ACX54508.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047500|gb|ACX54509.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047502|gb|ACX54510.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047504|gb|ACX54511.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047506|gb|ACX54512.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047508|gb|ACX54513.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 209

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/214 (39%), Positives = 121/214 (56%), Gaps = 19/214 (8%)

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           N   EE V+L +K           +  RE+ R++   +P     +P +   +   W  D 
Sbjct: 6   NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
           +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   L
Sbjct: 55  NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +I
Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWI 174

Query: 441 H----APHSWLDKNDLSL--NYPLPIV--DHKKA 466
           H    AP S L    + L  NYP PIV  D  KA
Sbjct: 175 HHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKA 208


>gi|149916244|ref|ZP_01904765.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b]
 gi|149809904|gb|EDM69755.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b]
          Length = 494

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 128/507 (25%), Positives = 199/507 (39%), Gaps = 86/507 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W + DLRI D+ AL+ A       V+ V+I  PE WRQ   S RQ  F+   L  +++
Sbjct: 2   ICWFKRDLRIADHPALHMAA--GLGPVLPVYILEPELWRQDDASGRQYAFLTECLTDLRE 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLD---------------------SYCLQQRVTKLFYN 109
            L++ G+           D++E LD                     +Y   +RV     +
Sbjct: 60  DLARAGLSL----VLRVGDAVEVLDDLRRSFGAAHLVSHEETGNGWTYARDRRVAGWARS 115

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
           +    +EV +  ++ +RL  R   +S  D  +  P                         
Sbjct: 116 QGVVWHEVPQCGVV-RRLATRDRWQSGRDGFMRAP------------------------- 149

Query: 170 VQADLRSLPVPAIRLTGPVTPSN-IPRFFDYPFQAIDPMFPIGEQNALH-ILRKFCKEKV 227
                  L VP + L G   PS+ +P       +   P    G + A    L+ F  ++ 
Sbjct: 150 ------QLGVP-VGLHGVEAPSDDLPDAMALGLKDSCPQRQKGGRRAGQATLQSFLHDRG 202

Query: 228 YYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL--- 282
             Y      P    Q  S++SP+L+ G LS R+           +    K G   W    
Sbjct: 203 QTYRRAMSSPLEGAQACSRISPHLAFGTLSVREAVQAGAARAAAV----KGGRDGWSGSM 258

Query: 283 ----NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE-WNKDSHLLQAWKQGYTGFPIID 337
               + L WR+ +   +   P++   +   P  E +     D+  LQAW +G TG P +D
Sbjct: 259 RSFQSRLAWRDHFMQKLEDEPALEY-RCLHPAYEGLRPQTPDATRLQAWSKGETGLPFVD 317

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA- 396
           A MR L   GW++ R+R +  +     L +DW+           D        G  W+  
Sbjct: 318 ACMRSLAATGWLNFRMRSMVMAVASYHLWLDWKATGPVLARLFTD-----YEPGIHWSQV 372

Query: 397 --STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LS 453
              +G   +   RI+NP  QG   DP G F RHWLPEL +VP  Y+  P +W      L 
Sbjct: 373 QMQSGTTGMNTIRIYNPVKQGHDQDPTGAFTRHWLPELADVPDAYLQTPWAWGGAGRLLG 432

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             YP P+VD  +A      Q +A +++
Sbjct: 433 RRYPEPLVDVARAAKTAREQVWAVRRR 459


>gi|160335152|gb|ABX24984.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 209

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/214 (39%), Positives = 121/214 (56%), Gaps = 19/214 (8%)

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           N   EE V+L +K           +  RE+ R++   +P     +P +   +   W  D 
Sbjct: 6   NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
           +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   L
Sbjct: 55  NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +I
Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPXFEGYKFDPNGEYVRRWLPELSRLPTDWI 174

Query: 441 H----APHSWLDKNDLSL--NYPLPIV--DHKKA 466
           H    AP S L    + L  NYP PIV  D  KA
Sbjct: 175 HHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKA 208


>gi|148533563|gb|ABQ84983.1| antennal cryptochrome 2 [Spodoptera littoralis]
          Length = 625

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/289 (34%), Positives = 136/289 (47%), Gaps = 26/289 (8%)

Query: 206 PMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWN 261
           P++  GE  AL  L +  + K  V  +   +  P     SQ  LSPYL  G LS R  + 
Sbjct: 242 PVWIGGESEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 301

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKD 319
           +L E +    +K      S   +++WREF+       P+     G P      +I W K+
Sbjct: 302 QLTELYKR--VKRVRPPLSLHGQILWREFFYCAATRNPNFDRMEGNPIC---VQIPWEKN 356

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378
              L  W  G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F  
Sbjct: 357 QEALAKWASGQTGFPWIDAIMIQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDE 416

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D + N G W W  S  +    +F  + P   G++ DP G FIR ++P L N+PT+
Sbjct: 417 LLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKTDPNGDFIRRYIPALKNMPTR 475

Query: 439 YIHAPHSWLDKND--------LSLNYPLPIVDHKKACH---HTLNQYYA 476
           YIH P  W+            +  +YPLP+VDH KA       + Q YA
Sbjct: 476 YIHEP--WVAPESVQQSARCIIGRDYPLPMVDHSKASQVNIERIKQVYA 522


>gi|219116188|ref|XP_002178889.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
           tricornutum CCAP 1055/1]
 gi|217409656|gb|EEC49587.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
           tricornutum CCAP 1055/1]
          Length = 610

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 144/540 (26%), Positives = 238/540 (44%), Gaps = 95/540 (17%)

Query: 2   KATTAMSVHLV--WLR-NDLRITDNKALYAACHNSDAKVIAVFI----------ATPEQW 48
           KAT+  S  +V  W R  DLR+ DN AL  +   +++  + VF            TP+  
Sbjct: 42  KATSRASSQVVLHWFRHGDLRLLDNPALIHSSKTAES-CVPVFCFDDSVYGNDNRTPDTR 100

Query: 49  RQHG-------ISARQSHFIYASLLQVQKSLSQKGIVFQ---------YHQCSNFDDSIE 92
             H           R++ F+  S+  +++SL  +G             + +  +   ++ 
Sbjct: 101 APHSNDRGQLKCGPRRAQFVLDSVQDLRRSLQSRGSALYVAHGKPAQVFQRLVDAWPAVP 160

Query: 93  WLDSYCLQQRVTKLFYNRQY--EINEVRR--DKLLEKRLQHRVICKSFDDSVL----LPP 144
             D+      +  +   R+   E N+  R    +L +R     + + +  ++     LP 
Sbjct: 161 AADTAAPNGSLLTIVCQREVVREENDAVRAVQSVLRRRFPQAKVQQIWGSTMYELDDLPF 220

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
            + L     M   +TPFR  + +N        LPVP  +L+    P N P       + +
Sbjct: 221 ATDL---ANMPDTFTPFRNKVEKNCQIGT--PLPVPK-QLS---LPENFPSALKQGLEYL 271

Query: 205 DPMFPIG-------------EQNALHIL---RKFCKEKVYYYVEQRD-IPAIQGTSQLSP 247
             +  +G             E+  LH +   +    + +  Y E R+ +     +++ SP
Sbjct: 272 PTLKELGYTDAQIQQVETHDERGVLHFMVAKQPDSHDCLKDYFETRNGMLGPNYSTKFSP 331

Query: 248 YLSIGVLSPR----QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +L+ G +SPR    QC  + +EE V+         +  + EL+WR+F +    F+ +   
Sbjct: 332 WLAHGNVSPRYVAAQC-RKYEEERVE-----NKSTYWVVFELLWRDFCK----FFATKHG 381

Query: 304 GKPFIPW--TEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
              F P+  TE+ +    W+     LQAW++G TG+P++DA MR+L   G+M NR R   
Sbjct: 382 DAIFYPYGTTERTDRHKPWSTFGRNLQAWQEGRTGYPLVDANMRELVATGFMSNRGRQNV 441

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGK 416
           ASFL  +L  DWR G ++F S LLD D+ SN   W  W A+ G       R FN + Q K
Sbjct: 442 ASFLAINLNHDWRCGGDFFESHLLDYDVYSN---WVNWCAAAGMTGGRLNR-FNISKQSK 497

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHT 470
            +D  G ++RHWLPEL  VP +++H P           +  L ++YP PIV   +   HT
Sbjct: 498 DYDQHGDYVRHWLPELAKVPNEFVHEPWKMTSFQQMEYECKLGVDYPNPIVPPSRPNPHT 557


>gi|260829102|ref|XP_002609501.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
 gi|229294858|gb|EEN65511.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
          Length = 514

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 136/281 (48%), Gaps = 34/281 (12%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +    +R  P +  +S       LSPYL  G LSPR  +
Sbjct: 211 VWPGGETEALTRLERHLERKAWVASFER--PKMTASSLLASPTGLSPYLRFGCLSPRLFY 268

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTE 312
            +L E +  +  +      S   +L+WREF+       P        ++C+         
Sbjct: 269 KKLTELYKKV-KRSNHPPLSLYGQLLWREFFYTAATNNPNFDKMVNNTICV--------- 318

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371
           +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  
Sbjct: 319 QIPWDKNPEALAKWAEGQTGFPWIDAIMAQLQQEGWIHHLARHAVACFLTRGDLWISWEE 378

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G + F   LLD D + N G W W  S  +    +F ++ P   G+R DP G FIR +LP+
Sbjct: 379 GMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHVYCPVNFGRRTDPNGDFIRKYLPK 437

Query: 432 LNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
           L   P +YI+ P +  +      K  +  +YPLP+V+H + 
Sbjct: 438 LRGFPAKYIYDPWNSPESVQKAAKCIIGKDYPLPMVNHAET 478


>gi|160335054|gb|ABX24935.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 206

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/212 (39%), Positives = 120/212 (56%), Gaps = 17/212 (8%)

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           N   EE V+L +K           +  RE+ R++   +P     +P +   +   W  D 
Sbjct: 6   NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
           +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   L
Sbjct: 55  NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +I
Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWI 174

Query: 441 H----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           H    AP S L    + L  NYP PIV   +A
Sbjct: 175 HHPWNAPESVLQAAGIELGSNYPRPIVGLDEA 206


>gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis]
 gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis]
          Length = 616

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 136/493 (27%), Positives = 205/493 (41%), Gaps = 50/493 (10%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW        ++TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------KITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            ++K      +      S  L     L+  +++     P      Q L+ + D   +PV 
Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVE 168

Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226
            I      + T PV+        +P   +  F        ++P GE  AL  L +  + K
Sbjct: 169 TITAEVMEKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERK 228

Query: 227 VYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +    +R        +  T+ LSPYL  G LS R  + +L + +  +  K  S   S  
Sbjct: 229 AWVANFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLY 287

Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +L+WREF+       P      G P      +I W+++   L  W +G TGFP IDA M
Sbjct: 288 GQLLWREFFYTAATNNPRFDKMDGNPIC---VQIPWDRNPEALAKWAEGRTGFPWIDAIM 344

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  
Sbjct: 345 TQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCS 403

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453
           +    +F  + P   GKR DP G +IR +LP L   P +YI+ P +  +      K  + 
Sbjct: 404 SFFQQFFHCYCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIG 463

Query: 454 LNYPLPIVDHKKA 466
           +NYP P+V+H +A
Sbjct: 464 VNYPKPMVNHAEA 476


>gi|89054364|ref|YP_509815.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
 gi|88863913|gb|ABD54790.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Jannaschia sp. CCS1]
          Length = 517

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 190/481 (39%), Gaps = 64/481 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LV  + DLR+ DN AL  A  + D   + VF+A PE W Q   SARQ  F+  SL  ++ 
Sbjct: 5   LVLFKRDLRVQDNPALALAA-SRDGAALPVFVAEPEAWAQPDASARQWRFVAESLEGLRA 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G      +     D +  L   C    V ++       I E     L       R
Sbjct: 64  DLAALGAPLIVRR----GDMMAVLGGLCATHDVGEII-----SIEET--GNLWSYGRDRR 112

Query: 131 VICKSFDDSVLLP--PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           +   +    V+    P   +   L     +   R+A+++         +PVP        
Sbjct: 113 LAAWARGAGVIWTEVPQLGVQRRLVNRDGWARDRQAVMRQA------QVPVPEGLRGVSE 166

Query: 189 TPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
            P +IP   D    A DP       G    L  L  F   +   Y      P       S
Sbjct: 167 EPGSIPDARDLAL-AFDPCPGRQAGGRDGGLATLASFLTARGQEYRRAMSSPLDGAAACS 225

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-------IWREFYRHLMA 296
           +LSP+L+ G LS R+  + +     ++    K     WL  L        WR+ +   + 
Sbjct: 226 RLSPHLAWGTLSSREVLHGMAARRAEV----KGTRDGWLGSLRSFEARVAWRDHFMQKLE 281

Query: 297 FYPSV---CMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             P++   C+   +    E +  N  D+  L AW++G TG P +DA MR L   GW++ R
Sbjct: 282 DQPAMEIRCLHSAY----EDLRPNVPDATRLSAWEKGETGIPFVDACMRSLIATGWINFR 337

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW------AASTGNDSVPYF 406
           +R + A+     L +DWR    +      D        G  W      A +TG +++   
Sbjct: 338 MRAMLAAVASYHLWLDWRRTGPHLARMFTD-----YEPGIHWPQMQMQAGTTGMNTI--- 389

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-----LSLNYPLPIV 461
           RI+NP  QG   DP GTF R W PEL  VP   +  P +W +        L   YP PIV
Sbjct: 390 RIYNPVKQGLDHDPTGTFTRTWCPELREVPDACLQTPWAWAETGSPAARRLGRRYPAPIV 449

Query: 462 D 462
           D
Sbjct: 450 D 450


>gi|194673414|ref|XP_585942.4| PREDICTED: cryptochrome 2-like [Bos taurus]
 gi|297483449|ref|XP_002693610.1| PREDICTED: cryptochrome 2-like [Bos taurus]
 gi|296479702|gb|DAA21817.1| cryptochrome 2-like [Bos taurus]
          Length = 585

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 144/508 (28%), Positives = 212/508 (41%), Gaps = 78/508 (15%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP----------EQWRQH 51
           +   A SVH  W R  LR+ DN AL AA   +   V  V+I  P           +WR  
Sbjct: 15  RGDGASSVH--WFRKGLRLHDNPALLAAVRGAHC-VRCVYILDPWFAASSSVGINRWRMM 71

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
              A QS  +    LQ +K  S  G     H        +EW         VT+L +   
Sbjct: 72  KNEATQS-LLRVLTLQWRKLAS--GGQLPCH--------MEW--------GVTRLTFEYD 112

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV- 170
            E     RD  + K  +   +    ++S  L     L+  +++     P      Q ++ 
Sbjct: 113 SEPFGKERDTAIMKMAKEAGVEVVTENSHTL---YDLDKIIELNGQKPPLTYKRFQAIIS 169

Query: 171 QADLRSLPVPAIR------LTGPVTPS-----NIPRF--FDYPFQAIDP-MFPIGEQNAL 216
           + +L   PV ++           +  S      +P      +P + + P ++  GE  AL
Sbjct: 170 RMELPRKPVGSVTSQQMEGCRAEIQESHDETYGVPSLEELGFPTEGLGPAVWQGGETEAL 229

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDL 270
             L K  + K +  V   + P +   S       LSPYL  G LS R  + RL     DL
Sbjct: 230 ARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDL 283

Query: 271 LIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQA 325
             K K  +    S   +L+WREF+       P      G P      +I W+++   L  
Sbjct: 284 YKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAK 340

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384
           W +G TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D
Sbjct: 341 WAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDAD 400

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            + N G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P 
Sbjct: 401 FSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPW 459

Query: 445 SWLD------KNDLSLNYPLPIVDHKKA 466
           +  +      K  + ++YP PIV+H +A
Sbjct: 460 NAPESIQKAAKCVIGVDYPRPIVNHAEA 487


>gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris]
          Length = 538

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 129/508 (25%), Positives = 208/508 (40%), Gaps = 72/508 (14%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +VH  W R  LR+ DN +L     N       +FI  P       +   +  F+   L  
Sbjct: 6   TVH--WFRKGLRLHDNPSLRHGL-NGAKTFRCIFILDPWFANASNVGINKWRFLLQCLED 62

Query: 68  VQKSL---SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           + +SL   + +  V +          ++   + CL       F         VR   ++ 
Sbjct: 63  LDRSLMKLNSRLFVIRGQPADILPKLLKEWGTTCLT------FEEDPEPFGRVRDQNIM- 115

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY-------TPFRKALIQNLVQADLRSL 177
                  +C+  + +V+    S++ H L   +          P      Q++V A + S 
Sbjct: 116 ------AMCRGMNITVI----SLVAHTLYKLECIIERNGGRAPLTYHQFQSVV-ASMESP 164

Query: 178 PVPAIRLTGPVTPS-------------NIPRFFDYPFQA---IDPMFPIGEQNALHILRK 221
           P+P   +T  V                 +P   +  F     +  ++  GE  AL  L +
Sbjct: 165 PLPVPPVTSTVVGDAVSPISDDHDEKYGVPTLEELGFDTEGLLPGVWQGGESEALSRLER 224

Query: 222 FCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
             + K +           Q  +P+  G   LSPYL  G LS R  + +L + +    IK 
Sbjct: 225 HLERKAWVASFGKPKMTPQSLLPSQTG---LSPYLRFGCLSTRLFYYQLNDLYRK--IKK 279

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
                S   +++WREF+       P+    +G P      ++ W+K+   L  W  G TG
Sbjct: 280 AVPPLSLHGQVLWREFFYCAATKNPNFDRMIGNPI---CVQVPWDKNPEALAKWANGQTG 336

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           FP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G 
Sbjct: 337 FPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGM 396

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD--- 448
           W W  S  +    +F  + P   G++ DP G +IR +LP L N+PT+YIH P +  +   
Sbjct: 397 WMW-LSCSSFFQQFFHCYCPVRFGRKADPNGDYIRKYLPVLKNMPTKYIHEPWNCPESVQ 455

Query: 449 ---KNDLSLNYPLPIVDHKKACHHTLNQ 473
              K  + ++YPLP+++H     H + +
Sbjct: 456 KAAKCTIGVDYPLPMLNHSVVSKHNIER 483


>gi|331227925|ref|XP_003326630.1| cryptochrome DASH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309305620|gb|EFP82211.1| cryptochrome DASH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 596

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 158/553 (28%), Positives = 231/553 (41%), Gaps = 122/553 (22%)

Query: 8   SVHLVWLRNDLRITDNKAL----YAACHNSDA----KV------IAVF------IATPEQ 47
           S+ +   RNDLR+ DN  L     A     DA    KV      + VF      ++  E 
Sbjct: 7   SLTIALFRNDLRLHDNPILTHSHLATVKEGDAVRRNKVSEYVLPLYVFDERQIELSGLEG 66

Query: 48  WRQHGISARQS------------HFIYASLLQVQKSLSQKG----IVFQYHQCSNFDDSI 91
           +RQHG  AR              +F+  S+ +++  L + G    + F   + +     I
Sbjct: 67  YRQHGGPARTEVCGFWRTGSHRLNFLCQSVYELKHQLKKSGSDLLVRFGVVEATTLK-II 125

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK---RLQHRVICKSFDDSVLLPPGSIL 148
           E L        V  ++  ++    EV  +K L K    L H+V    F    L+ P  + 
Sbjct: 126 EELQRNGFS--VDHVYMAKEVAFEEVGTEKRLAKLLGELAHKVPLTLFHSRSLVHPDDLP 183

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRS--LPVPAIRLTGPVTPSNI------PRF---- 196
               +   VYTPFR + +++L    L    LP+P      P  P  I      P +    
Sbjct: 184 FTINKTPDVYTPFR-SKVESLPADQLCRPLLPLPEKLQPFPALPETILKAAPEPGYSGSL 242

Query: 197 -----FDYPFQAI------------------------DP--MFPI--GEQNALHILR--- 220
                FD  F  +                        DP   FP   GE  AL  L    
Sbjct: 243 CEGQGFDEVFARLVKPLLSNPDIPHDPKEANTQDYKPDPRSAFPYQGGESEALRRLDDYF 302

Query: 221 -KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            K  +  V  Y   R+ +   Q +++ SP+L+ G +SPR+  + L +   +         
Sbjct: 303 FKGNQPPVRSYKTTRNGLLGHQYSTKFSPFLAFGCISPRKIIHSLWDH--EAKFGSNKDT 360

Query: 279 FSWLNELIWREFYRHL-MAFYPSVCMGKPF------IPWTEKIEW---NKDSHLLQ---- 324
           +  L E++WR+++  +   F   + + K F         T+K+ +    KD  + Q    
Sbjct: 361 YWVLFEILWRDYFIFISQKFGRRLFLIKGFEGRIDPKGATKKLSYWKPFKDEKMNQQSKG 420

Query: 325 ----------AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                     AW +G TG P IDA M +L   G+M NR R   ASFL KDL +DWRIG E
Sbjct: 421 KETPVDRNALAWLRGKTGVPFIDANMIELRESGFMSNRGRQNVASFLAKDLELDWRIGAE 480

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
           +F S LLD D  SN G WQ+ A  GND     R FNP  Q K +D QG +++HW+P+L +
Sbjct: 481 WFESALLDYDPCSNYGNWQYVAGVGNDPRTS-RQFNPIKQAKDYDSQGDYVKHWIPDLKS 539

Query: 435 VPTQYIHAPHSWL 447
            PT  I +P  WL
Sbjct: 540 FPTNRIQSP--WL 550


>gi|262275892|ref|ZP_06053701.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
           hollisae CIP 101886]
 gi|262219700|gb|EEY71016.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
           hollisae CIP 101886]
          Length = 427

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 191/435 (43%), Gaps = 40/435 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFIYASL 65
           L W R+DLR+ DN AL        +K + VF+  PE +R     +R     +  F+Y SL
Sbjct: 4   LFWFRHDLRLADNPALITLSRRC-SKALMVFVINPEWFRPAHYQSRHLGRFREEFLYQSL 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++ L +     +        + +  +   C +  +  +       + E ++   L +
Sbjct: 63  RSLERELKKH----KQRLVVKVGNPLLVIPDLCKKHGIDMVAMTDHPGVYERQQVAYLSR 118

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMY-KVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+  V   S  +S  L   S L      Y   ++ FRK + +   Q  L  +P+ A   
Sbjct: 119 TLRSEV---SVSESFTLFLRSQLAFDKTTYPATFSQFRKHVEK---QNILPCIPISA--- 169

Query: 185 TGPVTPSNIPRFFD--------YPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQR 234
                P ++P   D          F      +  GE   +  L +F    + +  Y + R
Sbjct: 170 -----PDSLPTVIDERRDIWGGQEFVYDLTPYHGGEDAGMVQLNQFFWKTQGLKNYKQTR 224

Query: 235 -DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            D+   Q +S+LS +L+ G +SPR     L     +          S   EL+WRE+++ 
Sbjct: 225 NDLDGWQFSSRLSAWLANGSISPRTVAAELDN--YEYRHGRSDSTQSMYAELLWREYFQW 282

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +M +Y +       I  T  +         +AW+QG T FPI++A MRQLN  G++ NR 
Sbjct: 283 MMHYYGADMFAFAGIKKTRPLT-TYYCQNYKAWEQGTTEFPIVNACMRQLNQTGYISNRG 341

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R I AS LV +L VDWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   
Sbjct: 342 RQIVASCLVNELGVDWRFGAAYFEQQLIDFDVATNYGNWQYLAGVGADPRGQ-RHFNLEK 400

Query: 414 QGKRFDPQGTFIRHW 428
           Q   +DP G F+  W
Sbjct: 401 QADVYDPNGEFVERW 415


>gi|264678127|ref|YP_003278034.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
 gi|262208640|gb|ACY32738.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
          Length = 473

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 126/453 (27%), Positives = 197/453 (43%), Gaps = 56/453 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVF----IATPEQWRQHGISARQSHFIY 62
           MS  L+WLRNDLR+ D   L+AAC      ++ V     I    +W    I   +  ++ 
Sbjct: 43  MSTVLLWLRNDLRLHDQPVLHAACRMGAQYLLPVLCLPDIQARTRWGFARIGQHRRTWLT 102

Query: 63  ASLLQVQKSL----SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            ++  + ++     SQ  I+      +    +        + + +     + Q E+  +R
Sbjct: 103 KTIQNLAENFHELRSQLLILNAPAAKALPALAQALGADIIVCEDIAA--PDEQAEVEALR 160

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
              L    + H         S LL    +     Q+  V+TPFR+A+    +Q     LP
Sbjct: 161 ASGLQVHTVWH---------SSLLHQDQLPWPVRQLPDVFTPFRQAVEHAKLQP-YPPLP 210

Query: 179 VPAIRLTGPVTPSNIPRFF-----------DYPFQAIDPMFPI-----GEQNALHILRKF 222
           VP      P  P +IP  +             P  ++D    I     GE  AL  LR++
Sbjct: 211 VPEAL---PRVPPHIPNEYLREQIPALSALAGPSPSLDTRSAIALLQGGESAALAHLRQY 267

Query: 223 CKEKV--YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
               +   Y   +  +  +  +S+ S +L+ G LSPRQ +  L++ F       +S  + 
Sbjct: 268 LARGLPHSYKRTRNGLVGLDYSSKWSLWLATGALSPRQAYAELRQ-FEATRGATESSYWL 326

Query: 281 WLNELIWREFYR-----HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           W  EL+WR+++R     H  A Y +  +G        ++    D     AW  G TG  +
Sbjct: 327 WF-ELLWRDYFRFLHMQHGRALYRARGLGP-------ELATPHDDQNFAAWCSGQTGKTL 378

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DAAMR+L   G++ NRLR + AS+L+ DL  DWR G  +F SQLLD D+ SN G W + 
Sbjct: 379 VDAAMRELAATGYLSNRLRQVAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYI 438

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           A  G D     R F+P  Q   +D  G + R W
Sbjct: 439 AGRGTDPQG-GRRFDPVKQAATYDADGAYQRLW 470


>gi|307826660|gb|ADN94465.1| cryptochrome 2 [Helicoverpa armigera]
          Length = 648

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 146/322 (45%), Gaps = 37/322 (11%)

Query: 184 LTGPVTPSN--------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEK--VYYY 230
           L G  TP N        +P   +  F+      P++  GE  AL  L +  + K  V  +
Sbjct: 208 LNGATTPLNDDHDDRFGVPTLEELGFETEGLKPPVWIGGESEALARLERHLERKAWVASF 267

Query: 231 VEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
              +  P     SQ  LSPYL  G LS R  + +L E +    +K      S   +++WR
Sbjct: 268 GRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKR--VKRVRPPLSLHGQILWR 325

Query: 289 EFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           EF+       P+     G P      +I W K+   L  W  G TGFP IDA M QL   
Sbjct: 326 EFFYCAATRNPNFDRMEGNPIC---VQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREE 382

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 383 GWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQF 441

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYP 457
           F  + P   G++ DP G FIR ++P L N+PT+YIH P  W+            +  +YP
Sbjct: 442 FHCYCPVRFGRKTDPNGDFIRRYIPALKNMPTRYIHEP--WVAPEAVQQSARCIIGRDYP 499

Query: 458 LPIVDHKKACH---HTLNQYYA 476
           +P+VDH KA       + Q YA
Sbjct: 500 MPMVDHSKASQVNIERIKQVYA 521


>gi|301609141|ref|XP_002934138.1| PREDICTED: cryptochrome-2 [Xenopus (Silurana) tropicalis]
          Length = 531

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 134/282 (47%), Gaps = 22/282 (7%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS R  +
Sbjct: 174 IWPGGETEALARLDRHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 231

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318
            RLKE +  +  K      S   +L+WREF+       P      G P      +I W+K
Sbjct: 232 YRLKELYKKVK-KNSPPPLSLYGQLLWREFFYTAATNNPKFDQMEGNPI---CVQIPWDK 287

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL   W  G + F 
Sbjct: 288 NPKALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFD 347

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD D + N G W W + +      +F  + P   G+R DP G ++R +LP L   P+
Sbjct: 348 ELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVRRYLPVLKAFPS 406

Query: 438 QYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
           +YI+ P S  +      K  + ++YP PIV+H +A    + +
Sbjct: 407 RYIYEPWSAPESVQKEAKCIIGIDYPKPIVNHAEASRMNIER 448


>gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus]
 gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus]
          Length = 828

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 139/495 (28%), Positives = 203/495 (41%), Gaps = 80/495 (16%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +VH  W R  LR+ DN AL     ++ A +  VF+  P       +   +  F+   L  
Sbjct: 50  TVH--WFRKGLRLHDNPALREGLKDA-ASLRCVFVIDPWFAGSSNVGINKWRFLLQCLED 106

Query: 68  VQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           + ++L Q   +  V +           +   + CL       F        +VR   + E
Sbjct: 107 LDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCL------TFEEDPEPFGKVRDHNISE 160

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY-----TPFRKALIQNLVQADLRSL-- 177
                  +CK  +  V+    S ++H L  YK+         R  L  N  QA + S+  
Sbjct: 161 -------MCKELNIDVI----SAVSHTL--YKLERIIEKNNGRAPLTYNQFQAIIASMDA 207

Query: 178 ---PVPAIRLTG---PVTPS--------NIPRFFDYPFQAIDPMFPI---GEQNALHILR 220
              P PAI L      VTP          +P   +  F+      PI   GE  AL  L 
Sbjct: 208 PPQPEPAITLAAIGRAVTPQCDDHDDKYGVPTLEELGFETEGLKPPIWVGGETEALARLE 267

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
           +                 +   + LSPYL  G LS R  + +L + +    IK      S
Sbjct: 268 RH----------------LGTQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAYPPLS 309

Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
              +L WREF+       P+     G P      +I W++++  L  W  G TGFP IDA
Sbjct: 310 LHGQLFWREFFYCAATKNPNFDKMAGNPIC---VQIPWDRNAEALAKWASGQTGFPWIDA 366

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S
Sbjct: 367 IMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LS 425

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KND 451
             +    +F  + P   G++ DP G +IR +LP L N PT+YIH P +  +      +  
Sbjct: 426 CSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPESVQRAARCI 485

Query: 452 LSLNYPLPIVDHKKA 466
           +  NYPLP+V+H  A
Sbjct: 486 IGKNYPLPMVNHAIA 500


>gi|261856009|ref|YP_003263292.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
 gi|261836478|gb|ACX96245.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
          Length = 447

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 126/468 (26%), Positives = 202/468 (43%), Gaps = 58/468 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHFI 61
           MS  L W R DLR+ DN+    AC  +DA ++ V+I       P +W    I   +   +
Sbjct: 1   MSRVLYWFRQDLRLRDNRCFIRACDQADA-LLPVYILDPAMEQPTRWGFDRIGPHRRVVL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  + + L Q+G       C      ++ L +   Q  +  ++        E     
Sbjct: 60  GQALRGLDRQLRQRGSGL----CLLQGQPVDQLLAMVRQGAIDTVWVEDIAAPQERALVD 115

Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L++ L+   V   +   S L+ P  +     ++   +TPFRK + Q  V  +    P P
Sbjct: 116 ALKQSLEPLGVSVYTGWQSSLIAPDDLPFAIDRLPDSFTPFRKRVEQAAVCIEH---PYP 172

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMF----------------------------PIGE 212
           A     P  P ++P    YP  +ID  F                             IG 
Sbjct: 173 APDAV-PPWPESVP----YPTASIDAQFDALCGASTRPAVDARSAFPCDDPDCSVDEIGA 227

Query: 213 QNALHILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
           Q   H+ + F +   + Y   R+ +     +S+ SP+L++GVLS RQ +     +  +  
Sbjct: 228 QR--HLDQYFARGLPHTYKATRNQLIGKDYSSKWSPFLALGVLSARQVY--AARQHFEQA 283

Query: 272 IKPKSGAFSWLN-ELIWREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                G + WL  EL+WR+++R L + +   +   +   P  ++     D+   + WK  
Sbjct: 284 RGANEGTY-WLRFELLWRDYFRFLHLKYGRRLYHARGLAP--DRPAPTHDADRFERWKNA 340

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG   IDAAM +L+  G++ NR+R + AS+L+ DL  DWR G  +F SQL+D D+ SN 
Sbjct: 341 DTGHAFIDAAMTELSRTGYLSNRMRQVVASYLIHDLGCDWRAGAAWFESQLVDYDVYSNQ 400

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
           G W + A  G D     R FNP  Q + +DP G +   WL     +P 
Sbjct: 401 GNWLYLAGYGTDPRGS-RRFNPDKQAQDYDPGGAYRALWLSGTAAMPA 447


>gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 [Callithrix jacchus]
          Length = 593

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 208/503 (41%), Gaps = 73/503 (14%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL
Sbjct: 22  ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 78

Query: 66  LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL +   +  V +      F     EW         VT+L +    E     RD 
Sbjct: 79  EDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 130

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            + K  +   +    ++S  L     L+  +++     P      Q ++ + +L   PV 
Sbjct: 131 AIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV- 186

Query: 181 AIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILR 220
                G VT                    +P      +P + + P ++  GE  AL  L 
Sbjct: 187 -----GSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLD 241

Query: 221 KFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           K  + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K 
Sbjct: 242 KHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKV 295

Query: 275 KSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
           K  +    S   +L+WREF+       P      G P      +I W+++   L  W +G
Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEG 352

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388
            TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N
Sbjct: 353 KTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVN 412

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
            G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +
Sbjct: 413 AGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPE 471

Query: 449 ------KNDLSLNYPLPIVDHKK 465
                 K  + ++YP PIV+H +
Sbjct: 472 SIQKAAKCIIGVDYPRPIVNHAE 494


>gi|323496729|ref|ZP_08101774.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
 gi|323318154|gb|EGA71120.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
          Length = 417

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 200/431 (46%), Gaps = 29/431 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSHFIYAS 64
           L W  NDLR+ DN  L  A    D ++I V++    TP   +   Q  + A +  F+  +
Sbjct: 6   LYWFTNDLRVADNPLLTEAASEVD-QLICVYLYPQLTPFLAQFSGQQQLGAHRLRFVDQA 64

Query: 65  LLQVQKSLSQKGIVFQY-HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           L  +  SL+++G      HQ +      + L S   Q  VT L+ NR    +E ++   L
Sbjct: 65  LQDLNHSLAKQGQRLAVIHQTAE-----QTLPSLIEQYNVTHLYVNRCAGWDETKQMHTL 119

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +++  +  +  S   + L     +     Q+   +T FRK + + +   DL  LPV  + 
Sbjct: 120 KQQFPYLKVV-SLSVNSLFQESQLPFTLAQLPATFTRFRKCM-EPVNTRDL--LPVSEL- 174

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA--LHILRKFCKEKVYYYVEQRD-IPAIQ 240
              P TP   P     P QA   +  +G + A   H    F  +   +Y + R+ +    
Sbjct: 175 ---PSTPLP-PEERSQPHQADPRVDYLGGETAGQQHCQWYFSHDFASHYKQTRNGLVGKS 230

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +++ SP+L++G LSP Q    ++    +  I      +  + EL+WRE++      + +
Sbjct: 231 YSTKFSPWLALGCLSPAQLVAYIQR--YEHEIGANESTYWIVFELLWREYFYWYAMKHGA 288

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +   +  I     +    D      W +G T F I++A M+QL+  G++ NR R + AS 
Sbjct: 289 LLFARSGIT-ASTVTKPLDQSKFHRWTKGETDFAIVNACMKQLHATGYLSNRGRQLAASC 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L+ +L +DWR G  YF +QL+D D+ASN G WQ+ A  G D  P  R FN   Q + +DP
Sbjct: 348 LIHELDMDWRYGAAYFETQLIDYDVASNWGNWQYLAGVGADPNPS-RRFNLDKQTQMYDP 406

Query: 421 QGTFIRHWLPE 431
              FI  WL E
Sbjct: 407 HRQFITRWLGE 417


>gi|255081582|ref|XP_002508013.1| predicted protein [Micromonas sp. RCC299]
 gi|226523289|gb|ACO69271.1| predicted protein [Micromonas sp. RCC299]
          Length = 450

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 206/467 (44%), Gaps = 33/467 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL+AA       V+A F+  P++     +     ++++ +L  +Q 
Sbjct: 1   VVWFRQDLRVRDNPALHAAARTGR-PVVACFVWCPKEEGGWPMGGATRYWLHHALGSLQA 59

Query: 71  SLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           SL  +  G        S+   S + L +   +     ++ NR YE  ++ RD+  E++  
Sbjct: 60  SLRARNAGGTSSPSSSSSSSSSFDELAAVVRECGAKDVYCNRVYEPWKIARDRECERKFS 119

Query: 129 HR--VICKSFDDSVLLPPGSILNHAL------QMYKVYTPFRKALIQNLVQADLRSLPVP 180
               V  +SF+  VL  P      A         Y     F +   + L +      P P
Sbjct: 120 AELNVRFRSFNAGVLYEPWDARPDATDDACWNSGYGSVRFFLRGCAR-LGEPPPPLPPPP 178

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            +R+  P        + ++     +P    G+ N      K   E+    V         
Sbjct: 179 TMRVRLPAD-KRARSYTEHGGVQSNPG--NGQSNGQSNAPKASTERFRADVRT------- 228

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            T+++SPY+  G LS R+ ++  K   V         A  +L  L WR+     +  +P 
Sbjct: 229 -TARISPYVRHGELSVREVYHSAKAIQVGSRKSRARSAAVFLRRLAWRDLAYWSLWRFPR 287

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +C  +P  P     +W        AW+ G TG+P++DA MR+L   G++ N +R + A F
Sbjct: 288 LC-DEPLRP-QYATQWWALPWDPVAWQFGQTGYPLVDAGMRELWATGYVPNYVRHVVAGF 345

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L++ L VDWR G+ +F   L+D D+A     WQ    +G D   +  + +P    K  DP
Sbjct: 346 LIEYLNVDWRHGQLWFHDTLVDADVAIQGFMWQNGGHSGMDQWNF--VMHPVYAAKSADP 403

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIV 461
            G ++R W PEL+ +P +Y+H    AP + L   +++L   YP  IV
Sbjct: 404 DGEYVRRWCPELSGLPREYVHCPWEAPATTLAAANVALGRHYPKRIV 450


>gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus]
          Length = 618

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 134/495 (27%), Positives = 205/495 (41%), Gaps = 54/495 (10%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W+R  LR+ DN+AL      +D     V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWVRQGLRLPDNRALREVIQGADT-ARCVYILDPSFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            ++K      +      S  L     L+  +++     P      Q L+ + +   +PV 
Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 168

Query: 181 AI------RLTGPVT-----PSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEK 226
            I      + T PV+        +P   +  F        ++P GE  AL  L +  + K
Sbjct: 169 TITAEVMSKCTTPVSDDHDEKCGVPSLEELGFDTGGLPSAVWPGGETEALTRLERHLERK 228

Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   S
Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285

Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
              +L+WREF+       P      G P      +I W+++   L  W +G TGFP IDA
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDRNPEALAKWAEGRTGFPWIDA 342

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S
Sbjct: 343 IMTQLRQEGWIHHLARRAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 401

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND 451
             +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K  
Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCV 461

Query: 452 LSLNYPLPIVDHKKA 466
           + +NYP P+V+H +A
Sbjct: 462 IGVNYPKPMVNHTEA 476


>gi|326523445|dbj|BAJ92893.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 420

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/198 (39%), Positives = 114/198 (57%), Gaps = 7/198 (3%)

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
           + G   +L  +  RE+ R+L AF       KP +       W  +    + W+QG TG+P
Sbjct: 15  EEGCSLFLRSIGLREYSRYL-AFNHPCSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYP 73

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           ++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+
Sbjct: 74  LVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQY 133

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN 450
            + +  D     RI NP  +G +FDP G ++R WLPEL  +PT++IH    AP S L   
Sbjct: 134 ISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLQAA 193

Query: 451 DLSL--NYPLPIVDHKKA 466
            + L  NYPLPIV+  +A
Sbjct: 194 GIELGSNYPLPIVELDEA 211


>gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus]
          Length = 569

 Score =  134 bits (336), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 137/492 (27%), Positives = 204/492 (41%), Gaps = 63/492 (12%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  +  SL
Sbjct: 3   WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSL 61

Query: 73  SQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            +   +  V +      F     EW         VT+L +    E     RD  + K  +
Sbjct: 62  RKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDAAIMKMAK 113

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PAIRLTGP 187
              +    ++S  L     L+  +++     P      Q L+      LP  PA+ ++  
Sbjct: 114 EAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQALISR--MELPKKPAVAVSSS 168

Query: 188 VTPS-------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYV 231
              S              +P      +P + + P ++  GE  AL  L K  + K +  V
Sbjct: 169 RMESCRAEIQKNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAW--V 226

Query: 232 EQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWL 282
              + P +   S       LSPYL  G LS R  + RL     DL  K K  +    S  
Sbjct: 227 ANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLF 282

Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +L+WREF+       P      G P      +I W+++   L  W +G TGFP IDA M
Sbjct: 283 GQLLWREFFYTAATNNPRFDRVEGNPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIM 339

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W + + 
Sbjct: 340 TQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSA 399

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453
                +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      K  + 
Sbjct: 400 FFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIG 458

Query: 454 LNYPLPIVDHKK 465
           ++YP PIV+H +
Sbjct: 459 VDYPRPIVNHAE 470


>gi|76803462|ref|YP_327731.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
 gi|76559277|emb|CAI50885.2| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
          Length = 616

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/293 (32%), Positives = 142/293 (48%), Gaps = 37/293 (12%)

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
           +TP+ I   FD        + P G  + A   LR F  E+++ Y      P  A + +S 
Sbjct: 255 ITPAAIDAAFD--ISPSKTLVPTGTHRRAAERLRSFV-ERIHSYPGNISAPQDAREASSG 311

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G+LS RQ +  + E+  +       G   + + L+W   Y   +  +P     
Sbjct: 312 LSPYLNFGLLSVRQVYQSVSEQAPEC-----RGRQMFTDRLVWNLHYNQKLVDWPG---- 362

Query: 305 KPFIPWTEKI------EWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                WT+        ++N+D H   L+QAWK G TGFP++DAAMR L   GW++ R+R 
Sbjct: 363 -----WTDTAVNPVFEDFNRDHHDPELVQAWKGGETGFPMVDAAMRCLRQTGWLNFRMRA 417

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASF V  L   W IG +++   L+D D+  N    QW +  G    P  R++NP  Q 
Sbjct: 418 MCASFFVHILQQPWWIGADWYHHHLIDSDVGINYT--QWQSQAGTIGKPVQRVYNPRKQV 475

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHS--WLDKNDLSL----NYPLPIVD 462
           +  DP G +I  WLPEL  +P  ++  P       + D  +    +YP P+VD
Sbjct: 476 RDHDPDGDWICRWLPELAPLPNTFLDRPERTPLAVQTDCGVTIGDDYPRPVVD 528


>gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421]
 gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421]
          Length = 490

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 136/505 (26%), Positives = 225/505 (44%), Gaps = 49/505 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R  LR+ DN AL  A  ++ A++  +FI  P       +   +  F+  SL 
Sbjct: 1   MIRSLVWFRKGLRLHDNPALLDAARDA-ARLYPLFIVDPWFVNPERVGVNRMRFLLESLG 59

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           ++  +L + G   IV Q           E L+    + ++ +L + R  E    RRD+ +
Sbjct: 60  EIDGNLRRLGSRLIVLQGR-------PQEVLERVLSRWQIGRLCFERDTEPYARRRDEAI 112

Query: 124 E---KRLQHRVICKS----FDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLR 175
               +R+  RVI  +    +D   L+  G         Y  +      L + +   A   
Sbjct: 113 RSMAERVGVRVISPTAHTLYDPDELIELGR--GKVPTTYGAFGRLAAKLGEPDAPVASPS 170

Query: 176 SLPVPAIRLTGPVTPSNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEK---VYY 229
            LP P         P+     +   + P + I P  P GE   L  L  +  ++     +
Sbjct: 171 HLPPPGELDADYGIPTLAELGYPDPECPSRGIIP--PGGEGEGLRRLHVYLSDRQRSAGF 228

Query: 230 YVEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
                D  A     T+ L  +L  G LS R  +  +++ + ++    +    S + +++W
Sbjct: 229 AKPDTDPTAFDPPSTTALGAHLKFGCLSARTFYAEVQKVYREVGEHTEP-PMSLIGQILW 287

Query: 288 REFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           REF+  +    P+     G P      +I W+ +   L AW +  TGFP IDAAM QL T
Sbjct: 288 REFFYTVGYATPNYDRIEGNPV---CRQIPWDDNPEYLAAWSEARTGFPWIDAAMTQLRT 344

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL V W  G+  F   LLD D + N   W W +++   +  
Sbjct: 345 EGWLHHLSRHAVACFLTRGDLWVSWEKGQAVFERLLLDQDWSLNASNWMWLSASAFFNA- 403

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-----LDKND---LSLNY 456
           Y+R+++P    K++DP+G ++R +LP+L  VP ++I+ P  W     + K     +  +Y
Sbjct: 404 YYRVYSPISFAKKYDPEGRYVRRYLPKLARVPAEFIYEP--WRAPLLVQKQAGCVVGRDY 461

Query: 457 PLPIVDHKKACHHTLNQYYAAKKQS 481
           P PIVDH++A    L +   A +Q+
Sbjct: 462 PDPIVDHEQAKACNLERMRLAYEQN 486


>gi|15341192|gb|AAK94666.1| cryptochrome 2a [Xenopus laevis]
          Length = 501

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 132/275 (48%), Gaps = 22/275 (8%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS +  +
Sbjct: 146 IWPGGETEALARLDRHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCKLFY 203

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318
            RL+E +  +  K      S   +L+WREF+       P      G P      +I W+K
Sbjct: 204 YRLQELYRKVK-KNNPPPLSLFGQLLWREFFYTAATNNPKFDQMEGNPIC---VQIPWDK 259

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL   W  G + F 
Sbjct: 260 NPKALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFD 319

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD D + N G W W + +      +F  + P   G+R DP G FIR +LP L   P+
Sbjct: 320 ELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPNGDFIRRYLPVLKAFPS 378

Query: 438 QYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
           +YI+ P S  +      K  + ++YP PIV+H +A
Sbjct: 379 RYIYEPWSAPESVQKQAKCIIGIDYPKPIVNHAEA 413


>gi|300778230|ref|ZP_07088088.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
           ATCC 35910]
 gi|300503740|gb|EFK34880.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
           ATCC 35910]
          Length = 432

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 195/435 (44%), Gaps = 25/435 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ-----SHFIYA 63
           ++++W   DLR  D+++LY      D   +AVF+   + + Q     R+     + F+  
Sbjct: 7   INILWFTKDLRTRDSESLYNIMQ-EDLPFLAVFVFDSDLFAQKQFGFRKIGKYRARFLLE 65

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           S+  +++ L++K I     Q  N  +++   +    +  + K+F  +++   E      +
Sbjct: 66  SIEDLKQRLAKKNIPLLVRQ--NKTENV--FEEIAKEFEIVKIFCQQEWTKEETDLQTKI 121

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAI 182
            K + +    KS+    LL P  +     ++  ++T FR  + +NL ++ +  +  +   
Sbjct: 122 RKTVPYAFWEKSYS-QFLLHPFFVCKVLDKIPDLFTTFRNKIEKNLLIRPEFETEQLICY 180

Query: 183 RLTGPVTPSNIP----RFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYY--YVEQRD 235
           +         I      F D+   A     FP GE   L  L  +  E  +   Y E R+
Sbjct: 181 KSEIHFESDKITLRSLGFEDFDTDARSAFPFPGGETEGLRRLHSYFPETQHLSRYKETRN 240

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            +   + +S+ SP+LS G LS    ++ +K    +         +    EL+WR+F+R++
Sbjct: 241 GLVGTEYSSKFSPWLSCGSLSAVTIYHEIKR--FEKKFGSNESTYWLFFELLWRDFFRYV 298

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +  +   K  I    +   +    L++ WK G T    ++A M +L   GWM NR R
Sbjct: 299 SLQHKDLIFRKKGIT-HRQYSASHHQELIRKWKNGETTSDFVNANMIELQKTGWMSNRGR 357

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
              AS+  K L  DWRIG  YF   L+D D+ SN G W + A  GNDS    R FNP  Q
Sbjct: 358 QNAASYFCKTLNQDWRIGAAYFEEMLIDYDVHSNYGNWMYLAGVGNDSRN--RTFNPERQ 415

Query: 415 GKRFDPQGTFIRHWL 429
            + +DP+  F R WL
Sbjct: 416 AELYDPKQEFRRLWL 430


>gi|157325494|gb|ABF59870.2| cryptochrome dash [Karenia brevis]
          Length = 512

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 205/466 (43%), Gaps = 48/466 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGIS 54
           M A  A +    W R DLR+ D  AL  AC ++   ++ +++  P ++           S
Sbjct: 1   MVAPAAGTARAFWFRTDLRLDDQPALSTACEDA-LSLLPIYVFDPAKFIDLTLAGARKSS 59

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           AR++ F+  SL+ +++ L  +G            D    +   C     + ++  +    
Sbjct: 60  ARRARFLIESLVNLRRRLEDRGSGLAVA----IGDPAVVIADLCAS--ASAIYVTQGICS 113

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-ALIQNLVQ-- 171
            E + +  +E +++   +        L  P     +  +   +++ F+K A +   ++  
Sbjct: 114 EETQDEARVESKMKAPALLSRVWGGSLYFPDECGCNPTKAPLLFSNFKKKAEVFGKIREP 173

Query: 172 -ADLRSLPVPAIRLTGPVTPSNI-------PRFFDYPFQA--------IDPM----FPIG 211
            A+L  LP     L G V   ++       P   +  F++         DP     F  G
Sbjct: 174 LAELTKLP----SLPGAVCEPDLSQALRFMPTLAELGFESEEINAAEFDDPRGVLPFSGG 229

Query: 212 EQNALHILRKFCKEKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           E  AL  L+K+  +  +   Y++ +  +     +S+ SP+L++G LSPR+ W  + + + 
Sbjct: 230 EDAALTRLQKWIWDDDHLREYWMIRNGMKGEGYSSKFSPWLALGCLSPRRVWKEV-QRYE 288

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
              +K KS  +  + EL+WR+F+ ++   +      K  I    K  W   +  L  WK 
Sbjct: 289 KERVKNKS-TYWLVFELMWRDFFVYMALTHGDKLFRKGGITGDRKRSWPGSTTDLDRWKN 347

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG  ++DA M +L   GWM NR R   AS+L+ ++ VDWR G  +F   LLD D  SN
Sbjct: 348 GKTGDLLVDANMLELLATGWMSNRGRQNVASYLIFNMRVDWRYGAAHFEEHLLDYDPCSN 407

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
            G W  AA      V     FN   Q  R+DP   +++HWL  L++
Sbjct: 408 WGNWVAAAGLTGQRV---NKFNTLYQLDRYDPSREYVKHWLGNLDD 450


>gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2-like [Pongo abelii]
          Length = 614

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 208/503 (41%), Gaps = 73/503 (14%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL
Sbjct: 43  ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 99

Query: 66  LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL +   +  V +      F     EW         VT+L +    E     RD 
Sbjct: 100 EDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 151

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            + K  +   +    ++S  L     L+  +++     P      Q ++ + +L   PV 
Sbjct: 152 AIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV- 207

Query: 181 AIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILR 220
                G VT                    +P      +P + + P ++  GE  AL  L 
Sbjct: 208 -----GSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLD 262

Query: 221 KFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           K  + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K 
Sbjct: 263 KHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKV 316

Query: 275 KSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
           K  +    S   +L+WREF+       P      G P      +I W+++   L  W +G
Sbjct: 317 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAEG 373

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388
            TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N
Sbjct: 374 KTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVN 433

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
            G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +
Sbjct: 434 AGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPE 492

Query: 449 ------KNDLSLNYPLPIVDHKK 465
                 K  + ++YP PIV+H +
Sbjct: 493 SIQKAAKCIIGVDYPRPIVNHAE 515


>gi|118572252|sp|Q49AN0|CRY2_HUMAN RecName: Full=Cryptochrome-2
 gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens]
 gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
 gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
 gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens]
 gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens]
 gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct]
 gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct]
          Length = 593

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 141/504 (27%), Positives = 209/504 (41%), Gaps = 73/504 (14%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  S
Sbjct: 21  SASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQS 77

Query: 65  LLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           L  +  SL +   +  V +      F     EW         VT+L +    E     RD
Sbjct: 78  LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERD 129

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179
             + K  +   +    ++S  L     L+  +++     P      Q ++ + +L   PV
Sbjct: 130 AAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV 186

Query: 180 PAIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219
                 G VT                    +P      +P + + P ++  GE  AL  L
Sbjct: 187 ------GLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 240

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            K  + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K
Sbjct: 241 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKK 294

Query: 274 PKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
            K  +    S   +L+WREF+       P      G P      +I W+++   L  W +
Sbjct: 295 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAE 351

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387
           G TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + 
Sbjct: 352 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 411

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  
Sbjct: 412 NAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAP 470

Query: 448 D------KNDLSLNYPLPIVDHKK 465
           +      K  + ++YP PIV+H +
Sbjct: 471 ESIQKAAKCIIGVDYPRPIVNHAE 494


>gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes]
          Length = 614

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 208/503 (41%), Gaps = 73/503 (14%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL
Sbjct: 43  ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 99

Query: 66  LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL +   +  V +      F     EW         VT+L +    E     RD 
Sbjct: 100 EDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 151

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            + K  +   +    ++S  L     L+  +++     P      Q ++ + +L   PV 
Sbjct: 152 AIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV- 207

Query: 181 AIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILR 220
                G VT                    +P      +P + + P ++  GE  AL  L 
Sbjct: 208 -----GSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLD 262

Query: 221 KFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           K  + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K 
Sbjct: 263 KHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKV 316

Query: 275 KSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
           K  +    S   +L+WREF+       P      G P      +I W+++   L  W +G
Sbjct: 317 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEG 373

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388
            TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N
Sbjct: 374 KTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVN 433

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
            G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +
Sbjct: 434 AGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPE 492

Query: 449 ------KNDLSLNYPLPIVDHKK 465
                 K  + ++YP PIV+H +
Sbjct: 493 SIQKAAKCIIGVDYPRPIVNHAE 515


>gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens]
          Length = 589

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 141/504 (27%), Positives = 209/504 (41%), Gaps = 73/504 (14%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  S
Sbjct: 17  SASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQS 73

Query: 65  LLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           L  +  SL +   +  V +      F     EW         VT+L +    E     RD
Sbjct: 74  LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERD 125

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179
             + K  +   +    ++S  L     L+  +++     P      Q ++ + +L   PV
Sbjct: 126 AAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV 182

Query: 180 PAIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219
                 G VT                    +P      +P + + P ++  GE  AL  L
Sbjct: 183 ------GLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 236

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            K  + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K
Sbjct: 237 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKK 290

Query: 274 PKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
            K  +    S   +L+WREF+       P      G P      +I W+++   L  W +
Sbjct: 291 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAE 347

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387
           G TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + 
Sbjct: 348 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 407

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  
Sbjct: 408 NAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAP 466

Query: 448 D------KNDLSLNYPLPIVDHKK 465
           +      K  + ++YP PIV+H +
Sbjct: 467 ESIQKAAKCIIGVDYPRPIVNHAE 490


>gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis]
          Length = 589

 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 136/495 (27%), Positives = 204/495 (41%), Gaps = 54/495 (10%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALREVIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            ++K      +      S  L     L+  +++     P      Q L+ + +   +PV 
Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVE 168

Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226
            I      + T PV+        +P   +  F        ++P GE  AL  L +  + K
Sbjct: 169 TITAEVMSKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 228

Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   S
Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285

Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
              +L+WREF+       P      G P      +I W+++   L  W +G TGFP IDA
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDRNPEALAKWAEGRTGFPWIDA 342

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S
Sbjct: 343 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 401

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KND 451
             +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +  D      K  
Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCI 461

Query: 452 LSLNYPLPIVDHKKA 466
           + +NYP P+V+H +A
Sbjct: 462 IGVNYPKPMVNHAEA 476


>gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta]
          Length = 593

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 207/503 (41%), Gaps = 73/503 (14%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL
Sbjct: 22  ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 78

Query: 66  LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL +   +  V +      F     EW         VT+L +    E     RD 
Sbjct: 79  EDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 130

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            + K  +   +    ++S  L     L   +++     P      Q ++ + +L   PV 
Sbjct: 131 AIMKMAKEAGVEVVTENSHTL---YDLERIIELNGQKPPLTYKRFQAIISRMELPKKPV- 186

Query: 181 AIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILR 220
                G VT                    +P      +P + + P ++  GE  AL  L 
Sbjct: 187 -----GSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLD 241

Query: 221 KFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           K  + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K 
Sbjct: 242 KHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKV 295

Query: 275 KSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
           K  +    S   +L+WREF+       P      G P      +I W+++   L  W +G
Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEG 352

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388
            TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N
Sbjct: 353 KTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVN 412

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
            G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +
Sbjct: 413 AGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPE 471

Query: 449 ------KNDLSLNYPLPIVDHKK 465
                 K  + ++YP PIV+H +
Sbjct: 472 SIQKAAKCIIGVDYPRPIVNHAE 494


>gi|254369039|ref|ZP_04985052.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121960|gb|EDO66130.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 457

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 134/280 (47%), Gaps = 14/280 (5%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCW-------N 261
           G   AL IL  F  ++   Y ++   P  A +  S+LSPY++ GV+S ++ +       N
Sbjct: 146 GRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRLSPYIAFGVISLKEIYQKANQRKN 205

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            +KE  V    K  S   S+L+ L W   +   +   PS+        + +      +  
Sbjct: 206 EIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTEPLNQQ 265

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             +AWK G TG+P+IDA MR L   GW++ R+R +  SF    L +DWR+   Y      
Sbjct: 266 CFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLMSFASYHLWLDWRVTSLYLAVLFT 325

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D +   +    Q    +G   +   RI+NP  Q     P G FIR WLPEL NV  + IH
Sbjct: 326 DYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNENIH 383

Query: 442 APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            P  WL+K++ SL+YP P +D K+A     +  Y  +K S
Sbjct: 384 TP--WLEKHN-SLDYPDPTIDEKQARKFAADNIYKIRKSS 420


>gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2-like [Sus scrofa]
          Length = 594

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 141/501 (28%), Positives = 207/501 (41%), Gaps = 73/501 (14%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  
Sbjct: 25  SVH--WFRKGLRLHDNPALLAAVRGAHC-VRCVYILDPWFAASSSVGINRWRFLLQSLED 81

Query: 68  VQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +  SL +   +  V +      F     EW         VT+L +    E     RD  +
Sbjct: 82  LDTSLRKLNSRLFVVRGQPADVFPALFQEW--------GVTRLTFEYDSEPFGKERDAAI 133

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182
            K  +   +    ++S  L     L+  +++     P      Q L+ + +L   PV   
Sbjct: 134 MKMAKEAGVEVVTENSHTL---YDLDKIIELNGQKPPLTYKRFQALISRMELPKKPV--- 187

Query: 183 RLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKF 222
              G VT                    +P      +P + + P ++  GE  AL  L K 
Sbjct: 188 ---GSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKH 244

Query: 223 CKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
            + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K K 
Sbjct: 245 LERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKVKR 298

Query: 277 GA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
            +    S   +L+WREF+       P      G P      +I W+++   L  W +G T
Sbjct: 299 NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEGKT 355

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390
           GFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N G
Sbjct: 356 GFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAG 415

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-- 448
            W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +  
Sbjct: 416 SWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESV 474

Query: 449 ----KNDLSLNYPLPIVDHKK 465
               K  + ++YP PIV+H +
Sbjct: 475 QKAAKCIIGVDYPRPIVNHAE 495


>gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis]
          Length = 618

 Score =  133 bits (334), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 133/494 (26%), Positives = 204/494 (41%), Gaps = 52/494 (10%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW        ++TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------KITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TPS--------NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITAEVMEKCTTPVLDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           K +    +R        +  T+ LSPYL  G LS R  + +L + +  +  K  S   S 
Sbjct: 228 KAWVANFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSL 286

Query: 282 LNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
             +L+WREF+       P      G P      +I W+++   L  W +G TGFP IDA 
Sbjct: 287 YGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDRNPEALAKWAEGRTGFPWIDAI 343

Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S 
Sbjct: 344 MTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSC 402

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDL 452
            +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K  +
Sbjct: 403 SSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCII 462

Query: 453 SLNYPLPIVDHKKA 466
            +NYP P+V+H +A
Sbjct: 463 GVNYPKPMVNHAEA 476


>gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens]
 gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens]
          Length = 614

 Score =  133 bits (334), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 141/504 (27%), Positives = 209/504 (41%), Gaps = 73/504 (14%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  S
Sbjct: 42  SASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQS 98

Query: 65  LLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           L  +  SL +   +  V +      F     EW         VT+L +    E     RD
Sbjct: 99  LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERD 150

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179
             + K  +   +    ++S  L     L+  +++     P      Q ++ + +L   PV
Sbjct: 151 AAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV 207

Query: 180 PAIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219
                 G VT                    +P      +P + + P ++  GE  AL  L
Sbjct: 208 ------GLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 261

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            K  + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K
Sbjct: 262 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKK 315

Query: 274 PKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
            K  +    S   +L+WREF+       P      G P      +I W+++   L  W +
Sbjct: 316 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAE 372

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387
           G TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + 
Sbjct: 373 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 432

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  
Sbjct: 433 NAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAP 491

Query: 448 D------KNDLSLNYPLPIVDHKK 465
           +      K  + ++YP PIV+H +
Sbjct: 492 ESIQKAAKCIIGVDYPRPIVNHAE 515


>gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens]
          Length = 593

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 137/501 (27%), Positives = 209/501 (41%), Gaps = 67/501 (13%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  S
Sbjct: 21  SASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQS 77

Query: 65  LLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           L  +  SL +   +  V +      F     EW         VT+L +    E     RD
Sbjct: 78  LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERD 129

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179
             + K  +   +    ++S  L     L+  +++     P      Q ++ + +L   PV
Sbjct: 130 AAIMKMAKEAGVEVVTENSHTL---YDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPV 186

Query: 180 PAIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219
                 G VT                    +P      +P + + P ++  GE  AL  L
Sbjct: 187 ------GLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 240

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            K  + K +  V   + P +   S       LSPYL  G LS R  + RL + +   + +
Sbjct: 241 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLY-KRVKR 297

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
             +   S   +L+WREF+       P      G P      +I W+++   L  W +G T
Sbjct: 298 NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEGKT 354

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390
           GFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N G
Sbjct: 355 GFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAG 414

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-- 448
            W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +  
Sbjct: 415 SWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESI 473

Query: 449 ----KNDLSLNYPLPIVDHKK 465
               K  + ++YP PIV+H +
Sbjct: 474 QKAAKCIIGVDYPRPIVNHAE 494


>gi|120556015|ref|YP_960366.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8]
 gi|120325864|gb|ABM20179.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Marinobacter aquaeolei VT8]
          Length = 505

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 125/484 (25%), Positives = 209/484 (43%), Gaps = 63/484 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLR+ D+  LYAA   S   V+ +++  PE W+Q   S RQ  F+  SL  ++K
Sbjct: 4   VVWFKRDLRVEDHGPLYAAV-QSGQPVVPLYVVEPEYWQQPDTSRRQWQFVAESLESLRK 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRLQH 129
            L + G            + I  LD    Q  +T++F +++   +   +RDK +    Q 
Sbjct: 63  QLKRLGSDL----LIAHGEVIRTLDDLKQQYGITQVFCHQETGGDWTFQRDKAVIAWCQS 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---------LRSLPVP 180
           + I                      ++ +  F   +++ LV  D         ++S  +P
Sbjct: 119 QQI---------------------EFREWQGF--GVVRRLVNRDDWDQHWNRIIKSTRLP 155

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKV--YYYVEQR 234
           A         S  P+    P Q      P     G + A+ +L  F + +   Y Y    
Sbjct: 156 APEGIRSPDTSGWPQSLPAPAQLNGGPCPDRQAGGSERAIALLDSFLERRCVGYQYNMSS 215

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYR 292
            + A +  S+LSP+L+ G +S R  + + KE  +  + L + K    S+ + L W   + 
Sbjct: 216 PLTAPRACSRLSPHLAWGTISLRDVYQQSKETGDHRNTLPRKKKSLTSFRSRLHWHCHFI 275

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNK----DSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
             +   P +     F     ++E  K    +S  L  W++G TG+P++DA MR L   GW
Sbjct: 276 QKLEDEPEL----EFRAMHRELEHLKTGPNNSERLHRWQEGQTGWPLVDACMRSLEHTGW 331

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           ++ R+R +  +     L + WR    +      D +   +    Q    +G   +   RI
Sbjct: 332 INFRMRAMLMAVASYQLWLHWRDPALHLARLFTDFEPGIHYP--QAQMQSGLTGINALRI 389

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL----DKNDLSLN-YPLPIVDH 463
           +NP +Q ++ DP+G FIR W+PEL  VP + IH P  WL     K     N Y  P+ DH
Sbjct: 390 YNPVLQSQKLDPEGEFIRRWIPELAGVPAEMIHTP--WLMTPAQKQRFGGNTYISPVCDH 447

Query: 464 KKAC 467
           ++A 
Sbjct: 448 EQAA 451


>gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 625

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 137/517 (26%), Positives = 215/517 (41%), Gaps = 70/517 (13%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M +H + W R  LR+ DN +L  +   +D+ V  V+I  P       +   +      S 
Sbjct: 1   MVIHTIHWFRKGLRLHDNPSLKDSLLGADS-VRCVYILDPWFAGSSNVGINRWRICLRSP 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS-------------------------YCLQ 100
           L V  S  Q+ + F      + D S+  L+S                         Y  Q
Sbjct: 60  LTV--SQEQEALRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDVFPRLFKAHPTVAVYVPQ 117

Query: 101 Q-RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159
           +  +++L Y    E     RD  ++K      +  +   S  L     L+  +++    +
Sbjct: 118 EWNISRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVCISHTL---YDLDKIIELNGGQS 174

Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPV-----TP--------SNIPRFFDYPFQA--- 203
           P      Q L+ + +  + VPA  +T  +     TP          +P   +  F     
Sbjct: 175 PLTYKRFQTLI-SRMDPVEVPAESITAEIMGKCTTPLSDDHDDKYGVPSLEELGFDTEVL 233

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPR 257
              ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS R
Sbjct: 234 SSAVWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCR 291

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK-PFIPWTEKIEW 316
             + +L + +  +  K  S   S   +L+WREF+       P  C  K    P   +I W
Sbjct: 292 LFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNP--CFDKMENNPICVQIPW 348

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEY 375
           +++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + 
Sbjct: 349 DRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKV 408

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           F   LLD D + N G W W  S  +    +F  + P   G+R DP G +IR +LP L   
Sbjct: 409 FEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGF 467

Query: 436 PTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
           P +YI+ P +  +      K  + ++YP P+V+H +A
Sbjct: 468 PAKYIYDPWNAPESVQKAAKCLIGVHYPKPMVNHAEA 504


>gi|312881360|ref|ZP_07741157.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309371000|gb|EFP98455.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 431

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 130/450 (28%), Positives = 206/450 (45%), Gaps = 64/450 (14%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFI---ATPEQWRQHGISARQS 58
           + L W  NDLR+TDN  L+ A    D  +       +  F+   +  E+W      A ++
Sbjct: 5   IGLYWFTNDLRLTDNPLLHKASKEVDQLICLYTRPQLTCFLQKYSCQERW-----GAART 59

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDD-SIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            F+  SL  + +SL   G      Q +  D+ +I  L     +  V+ L+ N+    +E 
Sbjct: 60  LFLNQSLRNLSESLDDVG-----QQLTVVDEPTIGTLSDLVTKHEVSDLYCNQFAGFDEQ 114

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRS 176
              + L +     +I +  + S  L     L  AL  +   +T FRK L++ +   +L  
Sbjct: 115 SVIEQLGRNFSDLIIHQ--NSSNHLYSEEQLPFALNGLPNTFTKFRK-LVEGISLRELVE 171

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYP----FQAIDPMFPIGEQNAL-HILRKFCKEKVYYYV 231
           +P    RL  P+   ++ R    P     Q+++  F  GE   + H LR F  ++   Y 
Sbjct: 172 VP----RLPPPI--KSVGRGVQIPAEKQMQSVE--FLGGEVFGMDHCLRYFSTKRASEYK 223

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELI 286
             R+ +     +++ SP+L+ G +SPRQ    L++       + K+GA     W+  EL+
Sbjct: 224 LTRNGLDGPSYSTKFSPWLAHGCISPRQVLEVLRD------YEQKNGANESTYWIFFELL 277

Query: 287 WREFY--------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
           WREF+        ++L  +       KP    T        S     W +G T FPI++A
Sbjct: 278 WREFFYWYARRWGKNLFLYSGIKTCSKPAAKGTSV------STAFSNWIEGKTDFPIVNA 331

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            M QL   G+M NR R + AS L+ +L +DWR G  YF +QL+D D+ SN G WQ+ A  
Sbjct: 332 CMNQLRKTGFMSNRGRQLVASCLIHELGIDWRCGAAYFETQLIDYDVGSNWGNWQYLAGV 391

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           G D+ P  R FN   Q + +DP+  FI  W
Sbjct: 392 GADTQPA-RQFNLGKQTEIYDPKREFIMQW 420


>gi|119713707|gb|ABL97757.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
           EB0_41B09]
          Length = 424

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 205/435 (47%), Gaps = 32/435 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--QHGISARQSH---FIYASL 65
           + W RNDLR+ DN +L  A  +SD +++ V++   + ++  + G S    H   ++   L
Sbjct: 4   IYWFRNDLRVIDNLSLNEAIESSD-EILFVYMQDVQSFKDTEWGFSRMGPHRKLYLSQGL 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLE 124
             +Q+ LS  G    Y+     DD+++      L + V K   +R Y E  +   +   E
Sbjct: 63  NALQEKLSNYGHSLNYY----LDDTVD-----GLLKLVEKFHIDRIYCESIDSHEELDQE 113

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            RL+ H+V   S+  S L     I  +   +  V+T FRK +    V+    SL    I 
Sbjct: 114 IRLRGHKVDLYSYYQSGLFLNDQIPFNLNDLPDVFTKFRKEIESREVKPIKPSLINQRIN 173

Query: 184 LTGPVTPSNIPRF----FDYP---FQAIDPMFPIGEQNALHILRK-FCKEKVYYYVEQR- 234
               +              YP   F   +  F  GE+     L   F   K   Y + R 
Sbjct: 174 AIKSIVDEESNEIEMEQMSYPKSSFPISEDRFFGGEEKGFTFLEAYFSSNKPSTYKKTRN 233

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYRH 293
           ++  I  +++ SP+L+ G +S RQ ++ L    ++++   K+ +  W+  EL+WRE++R 
Sbjct: 234 ELMGIDFSTKFSPWLASGYISARQVYDFLLSYELNVI---KNESTYWIFFELLWREYFRL 290

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   Y      +  +  +++   + D +  + WK+G T    I+A M++L   G++ NR+
Sbjct: 291 IFKKYGKKIFHRYGLGLSDEKVSHSDENF-ELWKEGRTASNFINAGMKELKETGFLSNRM 349

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R I AS+LV +L  DWR G  +F SQL+D D++SN+  W + A  G D     R FN   
Sbjct: 350 RQIVASYLVNELSCDWRAGAAWFESQLIDYDVSSNHCNWAYIAGHGTDPRG-GRYFNIQK 408

Query: 414 QGKRFDPQGTFIRHW 428
           Q   +DP G++ + W
Sbjct: 409 QKSTYDPYGSYEKLW 423


>gi|109896483|ref|YP_659738.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c]
 gi|109698764|gb|ABG38684.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Pseudoalteromonas atlantica T6c]
          Length = 445

 Score =  132 bits (333), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 128/441 (29%), Positives = 198/441 (44%), Gaps = 51/441 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH----FIYASL 65
           + W R+DLR+ DN AL A     D +++ VFI  P  ++  H  SA        F+  SL
Sbjct: 13  IFWFRHDLRLHDNPALVALSEQVD-ELLCVFIIDPRWFKSSHFQSAHMGDKRWAFLQQSL 71

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY--EINEVRRD 120
            ++Q+ L ++G    V +       D  I       +   +    Y RQ    + +   +
Sbjct: 72  SELQRHLQEQGQQLFVLEGETLEVLDALIGSYTPDIVASGMHPGVYERQQWQRVKQGNPN 131

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--IQNLVQADLRSLP 178
            L  +   H           L  P ++      +   +TPFRK +  +Q  V     +  
Sbjct: 132 TLFIQENGHS----------LFQPATLPFEIEYLPASFTPFRKRVEDLQVAVALPAPTAL 181

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK--FCKEKVYYYVEQRD- 235
            PA  L    + +  P     P +AI   F  GE  AL  L    F    +  Y + R+ 
Sbjct: 182 PPAPDLAWLSSKNVNP-----PKKAIGLAFTGGEDAALAQLEYTLFTSHNIKNYKQTRNG 236

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYR-H 293
           +     +S+LSP+L+ G LS RQ +  L+    +     K+ +  WL  EL+WRE+++ H
Sbjct: 237 LDGWDYSSKLSPWLANGCLSVRQVFTELRRYESEY---EKNDSTYWLYFELLWREYFQWH 293

Query: 294 LMAF------YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           L  +      +      +P   +         +     W QG T +PI++A M+QLN  G
Sbjct: 294 LFKYQSKLFQFSGTQDTRPLTTFV--------ALRFAMWCQGETPYPIVNACMKQLNHTG 345

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NR R + AS LV +L VDWR G  YF  QL+D D+ASN G WQ+ +  G D   + R
Sbjct: 346 YMSNRGRQLVASCLVNELGVDWRFGAAYFEQQLVDFDVASNWGNWQYLSGVGVDPRGH-R 404

Query: 408 IFNPTIQGKRFDPQGTFIRHW 428
            F+   Q +++DP G F+R W
Sbjct: 405 RFDLAKQAQQYDPNGEFVRQW 425


>gi|283476381|emb|CAY26038.1| chryptochrome 1 [Acyrthosiphon pisum]
          Length = 553

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 135/516 (26%), Positives = 220/516 (42%), Gaps = 82/516 (15%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V + W RN LR+ DN AL  A HN+  K+I +FI     +           F+  SL+
Sbjct: 1   MTVAVHWFRNGLRLHDNPALIEA-HNNAEKLITLFIFDETTFNPKWYGYNPMRFLLESLI 59

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE---INEVRRD 120
            +  +L+  G    + Q +  + F           +++++   F   + +   +   R +
Sbjct: 60  DLNNNLALVGGRLYILQGNPVNIFK---------MIKEKIGLHFITYEQDCAHLGRTRDE 110

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSIL---------------NHALQMYKVYTPFRKA- 164
           K+     ++ + C       L  P SI+               N A Q+    +P     
Sbjct: 111 KVKSFCDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVD 170

Query: 165 ----LIQNL---VQADLRSL--PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215
               + + L   +Q + ++L  P P      P  P N+   + +           GE  A
Sbjct: 171 WLSVIFEELPASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYG---------GETRA 221

Query: 216 LHILRK---FCKEKV---YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
           L  L++   + KE     +Y   Q +   +   S LS  L  G LS R+ +  L + F++
Sbjct: 222 LEQLKERLEYEKEAFVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFIN 281

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-----------IPWTEKIEWNK 318
                    +S  ++LIWR++      FY      K F           IPW + I+  +
Sbjct: 282 KFEGDLLPMYSVTSQLIWRDY------FYTMSIDNKNFGQIEDNPACISIPWND-IKIPE 334

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +  +L+ WK G TG+P IDA MRQL   GW+H+ +R   ASFL + DL + W  G  +FM
Sbjct: 335 NKKMLECWKTGKTGYPFIDAGMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFM 394

Query: 378 SQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436
             LLD D +  +G W W ++ST    +       P   G R DP G +I+ ++PEL N+P
Sbjct: 395 KYLLDADFSVCSGNWIWVSSSTFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMP 454

Query: 437 TQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
            Q+++ P    +         +  +YP  IVDH  A
Sbjct: 455 AQFLYEPWKCPESVQKQVGCIIGKDYPNCIVDHTIA 490


>gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus]
          Length = 555

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 204/496 (41%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q LV + +  L +PA
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLV-SKMEPLEMPA 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 DTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|51944883|gb|AAU14170.1| cryptochrome [Bactrocera tryoni]
          Length = 547

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 128/499 (25%), Positives = 215/499 (43%), Gaps = 63/499 (12%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYA 63
           A   +++W R+ LR+ DN AL  A  +    +  I +FI   E      +   +  F+  
Sbjct: 2   AKRANVMWFRHGLRLHDNPALLEAISDKTEGIALIPLFIFDGESAGTKTVGYNRMSFLLN 61

Query: 64  SLLQVQKSL---------SQKGIVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQY 112
           SL ++ K L         + K  +FQ +  + F    E+  L+  C +Q    ++  R  
Sbjct: 62  SLAEIDKQLKAIRGASDIAGKLYLFQGNPTTVFRRLNEYYRLNKICFEQDCEPIWNRRDD 121

Query: 113 EINEVRRDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
            +  +  D  L+     +V    +D  +V+   G I     QM+        A  + +  
Sbjct: 122 SVRALCND--LDIEAVEKVSHTLWDPRTVISTNGRIPPLTYQMFLHTVEIIGAPPRPVED 179

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI------------GEQNAL-HI 218
            +     V  ++LT  +    +  F+ +P      +FP             GEQ AL H+
Sbjct: 180 PEWDG--VEFLKLTDNML-MELNAFWQFPTPEDFNIFPDNISYVAKVKWRGGEQQALLHL 236

Query: 219 LRKFCKEK-----VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
             +   E+      YY   Q +   ++    +S +L  G LS R+ +  + + F  + I+
Sbjct: 237 AERLKVEERAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWSVHDLFKHVQIE 296

Query: 274 P------KSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKD 319
                   +G      +LIWRE++  +    P         +C+  P+ P         +
Sbjct: 297 AFYHRIHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEGNEICLNIPWAP--------PN 348

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMS 378
              LQ+W+ G TGFP+IDAAMRQL   GW+H+ LR   A+FL +  L   W  G  +F+ 
Sbjct: 349 QEQLQSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLK 408

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPT 437
            LLD D +   G W W +S+  + +    + + P    KR DP+G +IR ++PEL  +P 
Sbjct: 409 YLLDADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELAKIPQ 468

Query: 438 QYIHAPHSWLDKNDLSLNY 456
           +YIH P  W    ++  NY
Sbjct: 469 EYIHEP--WRMPQEMQENY 485


>gi|283806550|ref|NP_001164532.1| chryptochrome 1 [Acyrthosiphon pisum]
          Length = 553

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 135/516 (26%), Positives = 220/516 (42%), Gaps = 82/516 (15%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V + W RN LR+ DN AL  A HN+  K+I +FI     +           F+  SL+
Sbjct: 1   MTVAVHWFRNGLRLHDNPALIEA-HNNAEKLITLFIFDETTFNPKWYGYNPMRFLLXSLI 59

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE---INEVRRD 120
            +  +L+  G    + Q +  + F           +++++   F   + +   +   R +
Sbjct: 60  DLNNNLALVGGRLYILQGNPVNIFK---------MIKEKIGLHFITYEQDCAHLGRTRDE 110

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSIL---------------NHALQMYKVYTPFRKA- 164
           K+     ++ + C       L  P SI+               N A Q+    +P     
Sbjct: 111 KVKSFCDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVD 170

Query: 165 ----LIQNL---VQADLRSL--PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215
               + + L   +Q + ++L  P P      P  P N+   + +           GE  A
Sbjct: 171 WLSVIFEELPASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYG---------GETRA 221

Query: 216 LHILRK---FCKEKV---YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
           L  L++   + KE     +Y   Q +   +   S LS  L  G LS R+ +  L + F++
Sbjct: 222 LEQLKERLEYEKEAFVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFIN 281

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-----------IPWTEKIEWNK 318
                    +S  ++LIWR++      FY      K F           IPW + I+  +
Sbjct: 282 KFEGDLLPMYSVTSQLIWRDY------FYTMSIDNKNFGQIEDNPACISIPWND-IKIPE 334

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +  +L+ WK G TG+P IDA MRQL   GW+H+ +R   ASFL + DL + W  G  +FM
Sbjct: 335 NKKMLECWKTGKTGYPFIDAGMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFM 394

Query: 378 SQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436
             LLD D +  +G W W ++ST    +       P   G R DP G +I+ ++PEL N+P
Sbjct: 395 KYLLDADFSVCSGNWIWVSSSTFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMP 454

Query: 437 TQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
            Q+++ P    +         +  +YP  IVDH  A
Sbjct: 455 AQFLYEPWKCPESVQKQVGCIIGKDYPNCIVDHTIA 490


>gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca]
          Length = 580

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 139/497 (27%), Positives = 208/497 (41%), Gaps = 61/497 (12%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL
Sbjct: 10  ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 66

Query: 66  LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL +   +  V +      F     EW         VT+L +    E     RD 
Sbjct: 67  EDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            + K  +   +    ++S  L     L+  +++     P      Q ++ + +L   PV 
Sbjct: 119 AIMKMAKEAGVEVVTENSHTL---YDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVG 175

Query: 181 AI------RLTGPVTPS-----NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKFCKEK 226
           ++           +  S      +P      +P + + P ++  GE  AL  L K  + K
Sbjct: 176 SVTSQQMESCRADIQESHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERK 235

Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-- 278
            +  V   + P +   S       LSPYL  G LS R  + RL     DL  K K  +  
Sbjct: 236 AW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKVKRNSTP 289

Query: 279 -FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
             S   +L+WREF+       P      G P      +I W+++   L  W +G TGFP 
Sbjct: 290 PLSLFGQLLWREFFYTAATNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAEGKTGFPW 346

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W
Sbjct: 347 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 406

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
            + +      +F  + P   G+R DP G +IR +LP L   P++YI+ P +  +      
Sbjct: 407 LSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAA 465

Query: 449 KNDLSLNYPLPIVDHKK 465
           K  + ++YP PIV+H +
Sbjct: 466 KCIIGVDYPRPIVNHAE 482


>gi|284506739|dbj|BAI67363.1| cryptochrome [Bactrocera cucurbitae]
          Length = 547

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 136/509 (26%), Positives = 217/509 (42%), Gaps = 69/509 (13%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLL 66
            +++W  + LR+ DN AL  A  +    +  I +FI   E      +   +  F+  SL 
Sbjct: 5   ANVLWFXHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLA 64

Query: 67  QVQKSL---------SQKGIVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEIN 115
            + K L         S K  +FQ +  + F    E+  L+  C +Q    ++  R   + 
Sbjct: 65  DIDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDDSVR 124

Query: 116 EVRRDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            +  D  L+     +V    +D  +V+   G I     QM+           + +   D 
Sbjct: 125 SLCND--LDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVEIIGVPPRPVEDPDW 182

Query: 175 RSLPVPAIRLTGPV-----------TPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKF 222
               V  ++LT  +           TP +   + D         +  GEQ AL H+  + 
Sbjct: 183 DG--VEFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALLHLDERL 240

Query: 223 CKEK-----VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--- 274
             E+      YY   Q +   ++    +S +L  G LS R+ +  + + F  + I+    
Sbjct: 241 KVEERAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWSVHDLFKHVQIEALRQ 300

Query: 275 ---KSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLL 323
               +G      +LIWRE++  +    P        ++C+    IPW      NK+   L
Sbjct: 301 RVHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEGNAICLN---IPWAAP---NKEQ--L 352

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLD 382
           Q+W+ G TGFP+IDAAMRQL   GW+H+ LR   A+FL +  L   W  G  +F+  LLD
Sbjct: 353 QSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLKYLLD 412

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
            D +   G W W +S+  + +    + + P    KR DP+G +IR ++PEL NVP +YIH
Sbjct: 413 ADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELANVPQEYIH 472

Query: 442 APHSWLDKNDLSLN--------YPLPIVD 462
            P  W    +L  N        YP  IVD
Sbjct: 473 EP--WRMPQELQENCECVIGVQYPERIVD 499


>gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum]
 gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum]
          Length = 512

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 137/507 (27%), Positives = 207/507 (40%), Gaps = 55/507 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +VH  W R  LRI DN +L     N+      +FI  P       +   +  F+   L  
Sbjct: 6   TVH--WFRKGLRIHDNPSLREGLINAKT-FRCIFILDPWFAGASNVGINKWRFLLQCLSD 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL +        +        E L     Q   T   +    E     RD+ +    
Sbjct: 63  LDNSLKKLNSRLFVIK----GQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNI---- 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKV---YTPFRKALIQNLVQA-DLRSLPVPAIR 183
             +V+C     SV+      L    ++  V     P    L Q L++  D     VP+I 
Sbjct: 115 --KVMCSEMGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQKLLECIDPPERAVPSID 172

Query: 184 ---LTGPVTPS--------NIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVY 228
              L    TP          +P   +  F+ I+ +    +  GE  AL  L+   + K +
Sbjct: 173 KEFLGNAFTPIKYDHDEIFGVPTLEELGFKEINNITRHVWVGGETEALIRLQCHLERKAF 232

Query: 229 Y--YVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
              + + +  P   +   + L+PYL  G LS R  ++ L E +    I+      S   +
Sbjct: 233 IASFGKPKMTPQSLVASPTGLAPYLKFGCLSTRLFFSELNELYKK--IRKSQPPLSLHGQ 290

Query: 285 LIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           L+WR+F+       P+    +G P      +I W+K+   L  W  G TG+P IDA M Q
Sbjct: 291 LLWRDFFYCASTNNPNFDRMVGNPI---CVQIPWDKNPRALSKWANGQTGYPWIDAIMIQ 347

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H   R   A FL + DL + W  G + F   LLD D + N G W W  S  + 
Sbjct: 348 LRQEGWIHCIARHAVACFLTRGDLWLSWEEGMKVFDELLLDADWSVNAGYWMW-YSCSSF 406

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LS 453
              +   + P   G++ DP G +IR ++P LNN+P QYIH P  WL            + 
Sbjct: 407 YQEFIHCYCPVRFGRKVDPNGDYIRRYIPALNNMPNQYIHEP--WLAPESIQFSANCIIG 464

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           ++YPLPIV+H  A    L +   A +Q
Sbjct: 465 IDYPLPIVNHINASKINLERMKLAYQQ 491


>gi|213422286|ref|ZP_03355352.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 161

 Score =  132 bits (333), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 92/151 (60%), Gaps = 5/151 (3%)

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           +P P IR++G ++    P   +YP QA D  +FP+ E   +  LR FC +    Y  +RD
Sbjct: 13  VPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRD 72

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHL 294
            PA+ GTS+LS  L+ G LSPRQC +RL  E    L     G  S WLNELIWREFYRHL
Sbjct: 73  FPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQAL---DGGPGSVWLNELIWREFYRHL 129

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
           M +YP++C  +PFI WT+++ W ++ HL   
Sbjct: 130 MTWYPALCKHQPFIRWTKRVAWQENPHLFSG 160


>gi|149195753|ref|ZP_01872810.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155]
 gi|149141215|gb|EDM29611.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155]
          Length = 481

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 212/477 (44%), Gaps = 50/477 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++VWL+ DLR+ D+  L AA   S+   + ++   P       +S    +FIY SL++
Sbjct: 3   EINVVWLKRDLRLNDHACL-AAAEASELPYLIMYCFEPSLMNAPDVSENHLNFIYLSLME 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125
           +Q  L+     ++  H      D+ + L     + +++ LF ++++      +RD+    
Sbjct: 62  MQTKLAPFNRPLYILHA-----DATQALGYIQKKYQISTLFAHQEHGTARTWKRDR---- 112

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMY----KVYTPFRKALIQNLVQADLRSLPVPA 181
             Q    C   +  +L    S +   +Q      K +  + K    ++V+      P   
Sbjct: 113 --QVIDFCWQEEIELLEAEHSGIQRGIQNRDHWDKAWFSWHKT---DIVRNSYSISPFNF 167

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYVEQRDIPAI 239
            +   P        F  YP Q   P    GE  A H L+ F  E  K Y+    +   + 
Sbjct: 168 DKSLFPAALQFKKTFKTYPKQMQAP----GENTAHHYLKSFLAERGKNYHRFISKPSESR 223

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFY---RHLM 295
           +   +LSPYL+ G +S RQ +  +K        K    A+S  L  L WR  +     + 
Sbjct: 224 KSCGRLSPYLAWGNVSSRQVYQLVK---ASPKYKDNKRAYSGLLTRLKWRSHFIQKFEVE 280

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             Y  +C+ K +    E +  + ++  ++AWK G TG+P++DA MR L+  GW++ R+R 
Sbjct: 281 CSYEYLCLNKGY----ELMSLDFNAEFIEAWKDGKTGYPLVDACMRCLHATGWINFRMRA 336

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPTIQ 414
           +  SF    L  DWR G  +     LD +   +   +Q  A +TG ++V   RI+NP  Q
Sbjct: 337 MLTSFFCHHLAQDWRDGVYHLAKLFLDYEPGIHFPQFQMQAGTTGINTV---RIYNPIKQ 393

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP-------HSWLDKNDLSLNYPLPIVDHK 464
               DP+G FIR W+PEL ++    IH P              +L L YP PI+D K
Sbjct: 394 SMDNDPEGEFIRQWIPELKDLSNDEIHEPWKIEIMEAKMKGYTNLHL-YPAPIIDIK 449


>gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca]
          Length = 581

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 139/497 (27%), Positives = 208/497 (41%), Gaps = 61/497 (12%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL
Sbjct: 10  ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 66

Query: 66  LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL +   +  V +      F     EW         VT+L +    E     RD 
Sbjct: 67  EDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            + K  +   +    ++S  L     L+  +++     P      Q ++ + +L   PV 
Sbjct: 119 AIMKMAKEAGVEVVTENSHTL---YDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVG 175

Query: 181 AI------RLTGPVTPS-----NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKFCKEK 226
           ++           +  S      +P      +P + + P ++  GE  AL  L K  + K
Sbjct: 176 SVTSQQMESCRADIQESHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERK 235

Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-- 278
            +  V   + P +   S       LSPYL  G LS R  + RL     DL  K K  +  
Sbjct: 236 AW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKVKRNSTP 289

Query: 279 -FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
             S   +L+WREF+       P      G P      +I W+++   L  W +G TGFP 
Sbjct: 290 PLSLFGQLLWREFFYTAATNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAEGKTGFPW 346

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W
Sbjct: 347 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 406

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
            + +      +F  + P   G+R DP G +IR +LP L   P++YI+ P +  +      
Sbjct: 407 LSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAA 465

Query: 449 KNDLSLNYPLPIVDHKK 465
           K  + ++YP PIV+H +
Sbjct: 466 KCIIGVDYPRPIVNHAE 482


>gi|289741509|gb|ADD19502.1| deoxyribodipyrimidine photolyase/cryptochrome [Glossina morsitans
           morsitans]
          Length = 536

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 229/510 (44%), Gaps = 55/510 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYAS 64
           MSV+++W R+ LR+ DN AL  A  + +  +  + +FI   E          +  F+  S
Sbjct: 1   MSVNVLWFRHGLRLHDNPALLEALADREKGIALVPIFIFDGESAGTKCTGYNRLRFLLDS 60

Query: 65  LLQVQKSL-SQKG--IVFQYHQCSNFDDSIEW--LDSYCLQQRVTKLFYNRQYEINEVRR 119
           L  +      Q+G    FQ +  + F +  E   ++  C++Q    ++  R  ++  +  
Sbjct: 61  LRDLDDQFRCQRGRLYTFQGNPTTIFKELHECFGINKLCVEQDCEPIWNRRDNDVKVLCN 120

Query: 120 DKLLE--KRLQHRVIC--KSFDDSVLLPPGS--ILNHALQMYKVYTPFRKALIQNLVQAD 173
           +  ++  +++ H +    +    +  +PP +  +  H +Q+  +  P R A   N    D
Sbjct: 121 ELGIKWVEKISHTLWNPRQVIQTNGGIPPLTYQMFLHTVQV--IGLPPRPAENANWKGVD 178

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCK----- 224
           + ++    +      T    P  F+   + ++ +  +    GE  AL +L +  K     
Sbjct: 179 ILNINETILEKLPGFTEIPQPEQFNVFAEDLNRLALVKWKGGETEALILLEERLKVEGEA 238

Query: 225 -EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
            ++ YY   Q +   ++    +SP+L  G LS R+ +  + + F D+    K   F  ++
Sbjct: 239 FKRGYYLPNQANPNILETPKSMSPHLRFGCLSVRKFYWAVHDLFEDVQQHVKMFGFQIMS 298

Query: 284 ------ELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                 +LIWRE++  +    P         +C+  P+ P         +   L+ WK G
Sbjct: 299 GAHITGQLIWREYFYTMSVNNPYYDRMEENEICLNIPWAP--------VNDEQLENWKLG 350

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388
            TGFP++DAAMRQL   GW+H+ LR   A+FL +  L  +W  G ++F+  LLD D +  
Sbjct: 351 KTGFPLVDAAMRQLLAEGWIHHTLRNTVATFLTRGGLWFNWEHGLQHFLKYLLDADWSVC 410

Query: 389 NGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP---- 443
            G W W +S+  + +    +   P    KR DP G +I+ ++PEL +VP +YIH P    
Sbjct: 411 AGNWMWVSSSAFERLLDSSLVTCPLAMAKRLDPFGQYIKQYVPELAHVPKEYIHEPWRMP 470

Query: 444 --HSWLDKNDLSLNYPLPIVDHKKACHHTL 471
                  K  +  +YP  I+D  KA    +
Sbjct: 471 LSEQKRSKCIIGEHYPKRIIDFVKAAESNM 500


>gi|73983386|ref|XP_540761.2| PREDICTED: similar to cryptochrome 2 (photolyase-like) [Canis
           familiaris]
          Length = 593

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 207/503 (41%), Gaps = 73/503 (14%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL
Sbjct: 22  ASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSL 78

Query: 66  LQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL +   +  V +      F     EW         VT+L +    E     RD 
Sbjct: 79  EDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDA 130

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            + K  +   +    ++S  L     L+  +++     P      Q ++ + +L   PV 
Sbjct: 131 AIMKMAKEAGVEVVTENSHTL---YDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPV- 186

Query: 181 AIRLTGPVTPS-----------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILR 220
                G VT                    +P      +P + + P ++  GE  AL  L 
Sbjct: 187 -----GSVTSQQMESCRADIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLD 241

Query: 221 KFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           K  + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K 
Sbjct: 242 KHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKV 295

Query: 275 KSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
           K  +    S   +L+WREF+       P      G P      +I W+++   L  W +G
Sbjct: 296 KRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAEG 352

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388
            TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N
Sbjct: 353 KTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVN 412

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
            G W W + +      +F  + P   G+R DP G +IR +LP L   P++YI+ P +  +
Sbjct: 413 AGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPE 471

Query: 449 ------KNDLSLNYPLPIVDHKK 465
                 K  + ++YP PIV+H +
Sbjct: 472 SIQKAAKCIIGVDYPRPIVNHAE 494


>gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus]
 gi|118572250|sp|Q32Q86|CRY1_RAT RecName: Full=Cryptochrome-1
 gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus]
          Length = 588

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 204/496 (41%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q LV + +  L +PA
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLV-SKMEPLEMPA 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 DTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis]
          Length = 621

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 136/495 (27%), Positives = 204/495 (41%), Gaps = 54/495 (10%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALREVIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            ++K      +      S  L     L+  +++     P      Q L+ + +   +PV 
Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVE 168

Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEK 226
            I      + T PV+        +P   +  F        ++P GE  AL  L +  + K
Sbjct: 169 TITAEVMSKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 228

Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   S
Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285

Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
              +L+WREF+       P      G P      +I W+++   L  W +G TGFP IDA
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDRNPEALAKWAEGRTGFPWIDA 342

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S
Sbjct: 343 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 401

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KND 451
             +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +  D      K  
Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCI 461

Query: 452 LSLNYPLPIVDHKKA 466
           + +NYP P+V+H +A
Sbjct: 462 IGVNYPKPMVNHAEA 476


>gi|55378668|ref|YP_136518.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
           43049]
 gi|55231393|gb|AAV46812.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
           43049]
          Length = 534

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/253 (33%), Positives = 124/253 (49%), Gaps = 15/253 (5%)

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           + A  GTS LSPYL+ G LS RQ    + E   D       G   +++ L W + Y   +
Sbjct: 238 VDARDGTSGLSPYLAFGCLSVRQVIQYIDEHAPD-----GRGKEMFVSRLFWNKHYEQKL 292

Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             +P   +     P  E     + D  L+ AWK G TGFP++DA+MR L   GW++ R+R
Sbjct: 293 EDWPG-WLETAVNPVLEGFNAEQYDPDLVAAWKHGQTGFPMVDASMRCLRQTGWLNFRMR 351

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            ++AS     L   WRIG ++F   L+D   A N    QW +  G    P  R++NP  Q
Sbjct: 352 SMSASVYYHLLQQPWRIGADWFYHHLIDASAAINYT--QWQSQCGLVGKPALRLYNPRKQ 409

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP-----HSWLDKN-DLSLNYPLPIVDHKKACH 468
            +  DP G FIR W+PEL ++P +Y+  P     H       D+  +YP P+VD+  A  
Sbjct: 410 VRDQDPDGEFIRQWVPELESLPDEYLDRPEQTPVHVQASCGVDIGDDYPHPVVDYDAARQ 469

Query: 469 HTLNQYYAAKKQS 481
               +Y A +  +
Sbjct: 470 AFHRRYEAVRPDA 482


>gi|119503732|ref|ZP_01625814.1| deoxyribodipyrimidine photolyase, putative [marine gamma
           proteobacterium HTCC2080]
 gi|119460240|gb|EAW41333.1| deoxyribodipyrimidine photolyase, putative [marine gamma
           proteobacterium HTCC2080]
          Length = 490

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 135/479 (28%), Positives = 208/479 (43%), Gaps = 45/479 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS+ +VW + DLR+ D+  L AA       ++ V+I  PE  +      R  HFI  SL 
Sbjct: 1   MSLSVVWFKRDLRLADHAPLSAAV-ALGQPMLLVYIVEPELLKNPHYRRRHWHFIAQSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
            +   L   G      +     D I    +    QR+  LF   +  +     RD+ +  
Sbjct: 60  DLNHQLQPHGTKVWVLE----GDPITLFTAINQSQRIHHLFSYEETGLEVTFARDREVIT 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             + + +C     +  +  G    H       +     A  + ++ A L +L      L 
Sbjct: 116 WAKSQGVCWQEFPTNGVQRGR--KHRKGWNHRWGKLMAAPAETIIPAQLNAL---RSDLP 170

Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-- 242
             +  +   R   +  Q   P F P GEQ A   L  F   +   Y  QR I   +G+  
Sbjct: 171 EDLKGALCQRLGGWLPQ--HPNFQPGGEQQAHQTLEDFLTHRAGGY--QRHISKPEGSRQ 226

Query: 243 --SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYP 299
             S+LSP+L+ G LS RQ    LKE       + K G    L+    R  ++ H +  + 
Sbjct: 227 HCSRLSPHLAWGNLSIRQVQQALKER------QSKGGWARPLSAFESRLHWHCHFIQKFE 280

Query: 300 SVC------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           S C      + + F+ +      +++SHL+ AW +G TGFP +DA MR L   G++H R 
Sbjct: 281 SECTMEFESINRGFLNYPR----DQNSHLVAAWCEGQTGFPYVDACMRCLEATGYLHFRA 336

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R +  SFL   L  DWR+G  +  S  LD +   +    Q  A  G   +   RI+NP  
Sbjct: 337 RAMLVSFLTHHLWQDWRLGVTWLGSLFLDFEPGIHYPQMQMQA--GVTGINTIRIYNPVK 394

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSLNYPLPIVD----HKKA 466
           Q    DP  +FIR W+PE+ ++PT  +H P   S L+     ++YP PIV+    H++A
Sbjct: 395 QSLEHDPTASFIRRWVPEIADLPTPLVHQPWLRSPLEHVLHPVDYPEPIVNLDVSHRRA 453


>gi|224002573|ref|XP_002290958.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972734|gb|EED91065.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 420

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 143/283 (50%), Gaps = 41/283 (14%)

Query: 190 PSN-IPRFFDYPFQAID----------PMFPI----GEQNALHILRKFCKEK---VYYYV 231
           P N +P  FD  + A D             P+    GE  AL  ++ +  +K     Y+ 
Sbjct: 150 PKNYMPTLFDLGYNAEDIESVSSVDSRTALPVNYRGGETFALQRVKDYIWDKNLLKVYFD 209

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLIKPKSGAFSWLN-ELI 286
            +  +     +++ +P+L++G +SPR    +C +R +E+ V      ++ +  W+  EL+
Sbjct: 210 TRNGMIGSDYSTKFAPWLALGNVSPRYIAREC-SRYEEQRV------QNKSTYWVVFELL 262

Query: 287 WREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            R+ ++          FY +  +GK     +E+ +W  D   +QAW+ G TGFP++DA M
Sbjct: 263 IRDHFKFFAKKHGDKVFYLTGTIGKQ--RGSERKKWGMDRKKIQAWQDGMTGFPLVDANM 320

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   G+M NR R   ASFL  D+ +DWR G EYF   LLD D+ SN G W  AA    
Sbjct: 321 RELAATGFMSNRGRQNVASFLTIDMNMDWRYGGEYFEETLLDYDVHSNWGNWCSAAGMTG 380

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
             +  F I     Q K +D  G ++R W PEL NVP +Y+H+P
Sbjct: 381 GRLNRFNIVK---QSKDYDFGGEYVRLWCPELKNVPDKYVHSP 420


>gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus]
 gi|81882230|sp|P97784|CRY1_MOUSE RecName: Full=Cryptochrome-1
 gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus]
 gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus]
 gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
 gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
 gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus]
 gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus]
          Length = 606

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 204/496 (41%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q LV + +  L +PA
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLV-SKMEPLEMPA 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 DTITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|332993096|gb|AEF03151.1| deoxyribodipyrimidine photolyase [Alteromonas sp. SN2]
          Length = 437

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 197/447 (44%), Gaps = 36/447 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW---RQHGISARQ 57
           M+ TT  +  L W R+DLR  D  AL + C   D   +   I   + W     +GI    
Sbjct: 8   MRDTTRPTRGLFWFRHDLRFHDQVALSSLCQQVDELTLLYII--DDSWFVPNSYGIQPVG 65

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            H  +  L+   ++L++K     +   +    + E L S       T          NE 
Sbjct: 66  EH-RFNFLIDTIEALNEKASTLGHSILTLRGQTPELLVSLLSSNAFTHFGVTEHGGYNE- 123

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----A 172
           RR+     R    +   + + S L     +  +   M  V+TPF++  I++ ++     A
Sbjct: 124 RREVEAVSRFFPNIEIVTGESSSLFNQDDLPFNLEVMPDVFTPFKRK-IESAIKPREPMA 182

Query: 173 DLRSLP---VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KV 227
            L +LP    P I      T +  P     P    +  F  GE   L  L  +  E    
Sbjct: 183 TLTALPRSYTPDIDAECQYTLNRRP-----PRNQAEGTFVGGEDAVLSHLNSYLFEWKVA 237

Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             Y E R+ +   + +++LSP+L+ G LS R     +K+ +   ++K  S  + +  EL+
Sbjct: 238 ASYKETRNALDNWRDSTKLSPWLATGALSARYVIQEVKK-YEQNVVKNDSTYWIYF-ELL 295

Query: 287 WREFYRHLMAFYPSVCMG----KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           WRE++  L   + S        K  +P T     + D  +   W  G TG+PI+DA MRQ
Sbjct: 296 WREYFYWLQQKFGSKWFQLEGIKSKLPNT-----SHDPQVFVGWCNGQTGYPIVDACMRQ 350

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L + G++ NR R + AS LV +L  DWR G  +F SQLLD D+ASN G W + A  G D 
Sbjct: 351 LASTGYLSNRGRQLVASCLVNELRQDWRYGAAWFESQLLDYDVASNWGNWLYLAGVGTDP 410

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWL 429
               R FN   Q + +DP+G F   WL
Sbjct: 411 REN-RQFNLQKQTEIYDPKGEFCAKWL 436


>gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis]
          Length = 605

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 200/487 (41%), Gaps = 51/487 (10%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ--- 69
           W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L  +    
Sbjct: 1   WFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANL 59

Query: 70  KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + L+ +  V +      F     EW        ++TKL      E     RD  ++K   
Sbjct: 60  RKLNSRLFVIRGQPADVFPRLFKEW--------KITKLSIEYDSEPFGKERDAAIKKLAS 111

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              +      S  L     L+  +++     P      Q L+ + +  L +P   +T  V
Sbjct: 112 EAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPVETITAEV 167

Query: 189 -----TPS--------NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                TP          +P   +  F        ++P GE  AL  L +  + K +    
Sbjct: 168 MEKCTTPVLDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANF 227

Query: 233 QRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           +R        +  T+ LSPYL  G LS R  + +L + +  +  K  S   S   +L+WR
Sbjct: 228 ERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWR 286

Query: 289 EFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           EF+       P      G P      +I W+++   L  W +G TGFP IDA M QL   
Sbjct: 287 EFFYTAATNNPRFDKMEGNPIC---VQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQE 343

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 344 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQF 402

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K  + +NYP P
Sbjct: 403 FHCYCPVGFGRRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCIIGVNYPKP 462

Query: 460 IVDHKKA 466
           +V+H +A
Sbjct: 463 MVNHAEA 469


>gi|315123107|ref|YP_004065113.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
 gi|315016867|gb|ADT70204.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
          Length = 436

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 191/433 (44%), Gaps = 37/433 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYASL 65
           L WL+NDLRI DN  L         ++  VF+  P       ++Q      +  F+  SL
Sbjct: 6   LYWLQNDLRIDDNPIL-NDLSQQQCELDIVFVINPAWFKSNNYQQKPYGVHKQRFLMQSL 64

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++Q+S+   G      +     D +  L     +  + ++ Y+ Q  + E R+   L+ 
Sbjct: 65  YELQESVLGLGQTLHILE----GDPVRVLTQRINELGIDEVVYSEQIGVYEQRQITALKS 120

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V+ KS     L     +      +   +TPFRK +    +   L S+P  A RL 
Sbjct: 121 KCA-TVVFKSVMQDTLYQQQQLPFELADLPTGFTPFRKKIEATGI--SLSSVPFSAKRLP 177

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKE-KVYYYVEQRDIPAIQGTS 243
            P+         + P    +P+   G +  L H L+ F       Y + + ++     ++
Sbjct: 178 PPIILCAKQPISEPP--TGNPLLQGGHKAGLAHCLQYFSSALPSSYKITRNELGGFDNST 235

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYR-------HLM 295
           + S +L+ G +S +Q +  +           ++ +  W+  EL+WRE+++       H +
Sbjct: 236 KFSSWLAFGCISAKQIFCAVDAYEAQ---HGENESTYWIKFELLWREYFKWHAINVKHQL 292

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +       P   ++         +    W QG T FP+++A M++LN  G++ NR R 
Sbjct: 293 FTFKGKKQSSPLTTFS--------PNRFAKWCQGSTPFPLVNAIMKELNATGFITNRSRQ 344

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I AS LV +L +DWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   Q 
Sbjct: 345 IAASCLVNELQLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRG-GRHFNLAKQT 403

Query: 416 KRFDPQGTFIRHW 428
           +++DP G +I  W
Sbjct: 404 QQYDPHGEYIAKW 416


>gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome 1 [Equus caballus]
          Length = 587

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + RL + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLTDLYRKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori]
 gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori]
 gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori]
          Length = 730

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 144/509 (28%), Positives = 208/509 (40%), Gaps = 65/509 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +VH  W R  LRI DN AL     ++      VFI  P       +   +  F+   L  
Sbjct: 35  TVH--WFRKGLRIHDNPALREGIIDA-VTFRCVFIIDPWFASSSNVGINKWRFLLQCLED 91

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + KSL +        +    D     L     +   T L +    E     RD       
Sbjct: 92  LDKSLKKLNSRLFVVRGQPADA----LPKLFREWGTTALTFEEDPEPYGRVRD------- 140

Query: 128 QHRVICKSFDDSVLLPPGSILNHAL-QMYKVY--TPFRKALIQNLVQADLRSLPVPAIR- 183
            H +I K  +  + +   S ++H L ++ K+      +  L  +  QA + S+P P    
Sbjct: 141 -HNIISKCREVGITV--TSRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPPPAE 197

Query: 184 -------LTGPVTPS--------NIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKE 225
                  L G  TP          +P   +  F+      PI   GE  AL  L +  + 
Sbjct: 198 VTITPQMLNGATTPITDNHDDRFGVPTLEELGFETEGLKPPIWIGGESEALARLERHLER 257

Query: 226 K--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           K  V  +   +  P     SQ  LSPYL  G LS R  + +L E +    +K      S 
Sbjct: 258 KAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYK--RVKRVRPPLSL 315

Query: 282 LNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
             +++WREF+       P+     G P      +I W K+   L  W  G TG+P IDA 
Sbjct: 316 HGQILWREFFYCAATRNPNFDRMEGNPIC---VQIPWEKNQDALAKWANGQTGYPWIDAI 372

Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S 
Sbjct: 373 MIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-FSC 431

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------- 450
            +    +F  + P   G++ DP G FIR ++P L N+PT+YIH P  W+           
Sbjct: 432 SSFFQQFFHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEP--WMAPESVQAAAQC 489

Query: 451 DLSLNYPLPIVDHKKACH---HTLNQYYA 476
            +  +YP+P+VDH KA       + Q YA
Sbjct: 490 SIGRDYPMPMVDHTKASQINIERIKQVYA 518


>gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum]
 gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum]
          Length = 512

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 135/507 (26%), Positives = 208/507 (41%), Gaps = 55/507 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +VH  W R  LRI DN +L     N+      +FI  P       +   +  F+   L  
Sbjct: 6   TVH--WFRKGLRIHDNPSLREGLINAKT-FRCIFILDPWFAGASNVGINKWRFLLQCLSD 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL +        +        E L     Q   T   +    E     RD+ +    
Sbjct: 63  LDNSLKKLNSRLFVIK----GQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNI---- 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKV---YTPFRKALIQNLVQA-DLRSLPVPAIR 183
             +V+C     SV+      L    ++  V     P    L QN+++  D     VP+I 
Sbjct: 115 --KVMCSELGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQNILECIDPPERAVPSID 172

Query: 184 ---LTGPVTPS--------NIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVY 228
              L    TP+         +P   +  F+ I+ +    +  GE  AL  L+   + K +
Sbjct: 173 KEFLGNAFTPTKYDHDKIFGVPTVEELGFEEINNIARHVWVGGETEALIRLQCHLERKAF 232

Query: 229 Y--YVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
              + + +  P   +   + L+PYL  G LS R  ++ L E +    I+      S   +
Sbjct: 233 IASFGKPKMTPQSLLASPTGLAPYLKFGCLSTRLYFSELNELYKK--IRKSQPPLSLHGQ 290

Query: 285 LIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           L+WR+F+       P+    +G P      +I W+K+   L  W  G TG+P IDA M Q
Sbjct: 291 LLWRDFFYCASTNNPNFDRMVGNPI---CVQIPWDKNPRALSKWANGQTGYPWIDAIMIQ 347

Query: 343 LNTIGWMHNRLRMITASFLV-KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H   R   A FL   DL + W  G + F   LLD D + N G W W  S  + 
Sbjct: 348 LRQEGWIHCIARHAVACFLTWGDLWLSWEEGMKVFDELLLDADWSVNAGYWMW-YSCSSF 406

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LS 453
              +   + P   G++ DP G +IR ++P LNN+P +YIH P  WL            + 
Sbjct: 407 YKEFIHCYCPVRFGRKVDPNGDYIRRYIPALNNMPNKYIHEP--WLAPESIQITANCIIG 464

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           ++YPLPIV+H  A    + +   A +Q
Sbjct: 465 IDYPLPIVNHINASKINIERMKLAYQQ 491


>gi|254445301|ref|ZP_05058777.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
           DG1235]
 gi|198259609|gb|EDY83917.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
           DG1235]
          Length = 522

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/481 (25%), Positives = 210/481 (43%), Gaps = 45/481 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLR+ D++ L+ A  +    V+ ++I  P     + I+     FI  SL  +  
Sbjct: 8   IVWFKRDLRVHDHRPLFEA--SRLGPVLPLYIVEPILLDSNDIAPCHGSFINDSLRDLDT 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRLQH 129
           SL + G     H+ +    + E   S        +LF + +       RRD+ +    + 
Sbjct: 66  SLRKLGTALVVHEGT----ATEVFQSLLKSIGPFRLFSHEETGNALTFRRDRDVAAWTKT 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           + I       +  P   ++            + + +    + A     P+         +
Sbjct: 122 QRI-----QWIEYPQNGVIRRLTTRDGWADRWHERMKVEQISAPKHIAPI-----LKSQS 171

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS--QLSP 247
           P++ P+    P  A   +   GE  A   L  F +E+   Y ++   P    TS  +LSP
Sbjct: 172 PTDFPKVLRTP-PANPSLQAGGETPANKCLASFLQERGRAYHKEMSSPLTADTSCSRLSP 230

Query: 248 YLSIGVLSPR----QCWNR---LKEEFVDLLIKPKS--------GAFSWLNELIWREFYR 292
           YL+ G +S +      W +   L+E+      +              S+L+   W   + 
Sbjct: 231 YLAYGCISMKTVVQSTWTKAAHLREQKAAAKAEKTPYHERYSLMALRSFLSRCHWHCHFI 290

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             +   PS+   KPF P  E +   + +H  L+AW+ G+TG+P +DA +R LNT  W++ 
Sbjct: 291 QKLEDQPSIEF-KPFNPALEGLRRLEPNHAFLEAWQTGHTGYPFVDACIRYLNTHKWINF 349

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R +  SF   DL +DWR  +++     LD +   +    Q    +G   +   RI+NP
Sbjct: 350 RMRAMLVSFAAYDLWIDWRHFKDHLARAFLDYEPGIHYS--QIQMQSGTTGINTLRIYNP 407

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSL----NYPLPIVDHKK 465
             QG+  DP+G FI+ W+PEL  +P +++H P   S   +  LS     +YPLPI+DH +
Sbjct: 408 IKQGRDQDPRGIFIKRWVPELAAIPAEHVHEPWTLSQTQQKKLSCLLGKHYPLPIIDHAE 467

Query: 466 A 466
           A
Sbjct: 468 A 468


>gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1-like [Pongo abelii]
          Length = 586

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 136/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSL---SQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL   + +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDASLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|296487421|gb|DAA29534.1| cryptochrome 1 (photolyase-like) [Bos taurus]
          Length = 543

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|195451205|ref|XP_002072813.1| GK13802 [Drosophila willistoni]
 gi|194168898|gb|EDW83799.1| GK13802 [Drosophila willistoni]
          Length = 543

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 130/515 (25%), Positives = 226/515 (43%), Gaps = 72/515 (13%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHF 60
           A      +++W R+ LR+ DN AL +A  + D  +  I +FI   E      +   +  F
Sbjct: 2   ANVTCGANVIWFRHGLRLHDNPALLSALADKDQGIALIPIFIFDGESAGTKDVGYNRMRF 61

Query: 61  IYASLL----QVQKSLSQKGI--VFQYHQCSNFDDSIEWLD--SYCLQQRVTKLFYNRQY 112
           +  SL     +VQ++   +G   +FQ      F    + L     C +Q    ++  R  
Sbjct: 62  LLDSLQDLDGKVQQATEGRGRLHIFQGQPKEIFRRLHQQLQLKKICFEQDCEPIWSQRDA 121

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSILNHALQMYK-----VYTPFRKAL 165
            +  + ++  +E      ++  +  D  +V+   G I     QM+      +  P R   
Sbjct: 122 SVKSLCQELGIEWV---EMVSHTLWDPHTVIETNGGIPPLTYQMFLHTVEIIGLPPRPTN 178

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRK 221
             N        +     R    +     P +F+     +  +  I    GE  AL +L++
Sbjct: 179 DPNWNNVGFVEISQELQRELKYLQHFPTPEYFNIYCDNMGYLAKINWRGGETEALLLLQE 238

Query: 222 FCKEKVY-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKP- 274
             K +       YY+  + +P I  T + +SP+L  G LS R+ +  + + F ++ ++  
Sbjct: 239 RLKVEQSAFERGYYLPNQALPNILDTPKSMSPHLRFGCLSVRRFYWNVHDLFKNVQLQAC 298

Query: 275 -----KSGAFSWLNELIWREFYRHLMAFYPS---------VCMGKPFIPWTEKIEWNKDS 320
                 +G      +LIWRE++ + M+   S         +C+    IPW++  E     
Sbjct: 299 VRGVQMTGGSHITGQLIWREYF-YTMSVNNSNYDRMDGNEICLN---IPWSKPHE----- 349

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQ 379
             L+ W+ G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  
Sbjct: 350 EKLERWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGVQHFLKY 409

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI------QGKRFDPQGTFIRHWLPELN 433
           LLD D +   G W W +S+      + R+ + ++        KR DP G +I+ ++PEL 
Sbjct: 410 LLDADWSVCAGNWMWVSSSA-----FERLLDSSLVTCSQAMAKRLDPDGLYIKQYVPELR 464

Query: 434 NVPTQYIHAPHSWLDKND------LSLNYPLPIVD 462
           NVP +YIH P     ++       + ++YP PI+D
Sbjct: 465 NVPKEYIHEPWRMSAEDQERYECLIGVHYPEPIID 499


>gi|120553261|ref|YP_957612.1| DNA photolyase FAD-binding subunit [Marinobacter aquaeolei VT8]
 gi|120323110|gb|ABM17425.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Marinobacter aquaeolei VT8]
          Length = 440

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 203/446 (45%), Gaps = 52/446 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYASL 65
           L W   DLR+ DN AL AA  +    ++ VF+  P     ++++   +   +  F++ SL
Sbjct: 4   LYWFTRDLRLHDNPALLAAARSD--MLLCVFVVDPRWFTGDRFQCRALGDHRWRFLWQSL 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +++SL   G   + H      + +  L     +  V +L  +R     E  + + L+ 
Sbjct: 62  MALERSLRPMGQ--RLHIAWGEPEVV--LPELAREHGVQRLIRSRLPGTEEAAQWQALKT 117

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-------LRSLP 178
           RL   V  + F+   +   G +     ++   ++ FRK  ++   Q D       + +LP
Sbjct: 118 RLPE-VTFQQFETLGMFAEGQLPMELAELPDTFSQFRKQ-VEKAEQPDHTLRIRTVSALP 175

Query: 179 VPAI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYV 231
            P       R   P  P  I R    PF         GE+  L  L+ F   + ++  Y 
Sbjct: 176 PPPGFPEDNRGQCPPIPEPIHR---SPFTG-------GEEAGLAQLQAFVFGQHRIANYK 225

Query: 232 EQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           E R+     G+S + SP+L+ G LS R+    + E++     +  S  + W  EL+WRE+
Sbjct: 226 ETRNALDDWGSSSKFSPWLANGCLSAREVVAAI-EQYERQHTRNDSTYWLWF-ELLWREY 283

Query: 291 Y-----RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +     +H    +    + +   P T         H  +AW +G T +PI++AAM QL  
Sbjct: 284 FYWYALKHGGRLFSRDGVQRKRRPVTFY------GHRFKAWCEGNTQYPIVNAAMNQLRE 337

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G++ NR R + AS L+ +L +DWR G  +F  QL+D D+ASN G WQ+ A  G D    
Sbjct: 338 TGYISNRARQLVASCLINELELDWRYGAAWFEQQLVDYDVASNYGNWQYLAGVGADPRG- 396

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPE 431
            R FN   Q +++DP+  F+  W  E
Sbjct: 397 LRQFNLDKQAQQYDPEEAFVHRWQGE 422


>gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta]
          Length = 586

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGINYPKPMVNHAEA 476


>gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin]
          Length = 587

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 135/495 (27%), Positives = 203/495 (41%), Gaps = 54/495 (10%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         + KL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NIAKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            ++K      +      S  L     L+  +++     P      Q L+ + +   +PV 
Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 168

Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226
            I      + T PV+        +P   +  F        ++P GE  AL  L +  + K
Sbjct: 169 TITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 228

Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   S
Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285

Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
              +L+WREF+       P      G P      +I W+K+   L  W +G TGFP IDA
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWIDA 342

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S
Sbjct: 343 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 401

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KND 451
             +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  
Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCI 461

Query: 452 LSLNYPLPIVDHKKA 466
           + +NYP P+V+H +A
Sbjct: 462 IGVNYPKPMVNHAEA 476


>gi|71297422|gb|AAH35161.1| CRY2 protein [Homo sapiens]
          Length = 461

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 136/288 (47%), Gaps = 29/288 (10%)

Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249
             +P + + P ++  GE  AL  L K  + K +  V   + P +   S       LSPYL
Sbjct: 85  LGFPTEGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 142

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304
             G LS R  + RL     DL  K K  +    S   +L+WREF+       P      G
Sbjct: 143 RFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEG 198

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
            P      +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + 
Sbjct: 199 NPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 255

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL V W  G   F   LLD D + N G W W  S G     +F  + P   G+R DP G 
Sbjct: 256 DLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCGAFFQQFFHCYCPVGFGRRTDPSGD 314

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465
           +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +
Sbjct: 315 YIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAE 362


>gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis]
 gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis]
          Length = 570

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 133/282 (47%), Gaps = 22/282 (7%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS R  +
Sbjct: 213 IWPGGETEALARLDRHLERKAW--VANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFY 270

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318
            RL +E    + K      S   +L+WREF+       P      G P      +I W+K
Sbjct: 271 YRL-QELYQKVKKNSPPPLSLYGQLLWREFFYTAATNNPKFDQMEGNPI---CVQIPWDK 326

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL   W  G + F 
Sbjct: 327 NPKALAKWTEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFD 386

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD D + N G W W + +      +F  + P   G+R DP G +++ +LP L   P+
Sbjct: 387 ELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPS 445

Query: 438 QYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
           +YI+ P S  +      K  + ++YP PIV+H +A    + +
Sbjct: 446 RYIYEPWSAPESVQKEAKCIIGIDYPKPIVNHAEASRMNIER 487


>gi|163846298|ref|YP_001634342.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524057|ref|YP_002568527.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
 gi|163667587|gb|ABY33953.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447936|gb|ACM52202.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
          Length = 510

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 132/297 (44%), Gaps = 25/297 (8%)

Query: 188 VTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRDIPAIQGTS 243
           + P  IP       P   +    P GE  AL  L  F   + + Y+      + A +G S
Sbjct: 165 IDPGTIPTADELSLPPDTLSEHQPAGETAALQTLTDFIHRRSQQYHRALASPLTAWEGCS 224

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ G LS R      +    +L   P      W+  L   E   H    +     
Sbjct: 225 RLSAYLAWGALSIRTVVQATRHRISELAFDPSPATRGWVRALNAFESRLHWHCHFIQKLE 284

Query: 304 GKPFIPWTEKI-------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P I     +       E N    LL AW  G TG+P +DA MR L   GW++ R+R +
Sbjct: 285 DEPEIEVRNLVRAYDGMREENHRPDLLVAWASGRTGYPFVDACMRALTATGWLNFRMRAM 344

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST-GNDSVPYFRIFNPTIQG 415
             SF+  DL   WR        + +D +   +    Q  A T GN ++   RI+NP  QG
Sbjct: 345 LVSFVAYDLWQHWREPALILARRWIDYEPGIHYSQMQMQAGTSGNRTI---RIYNPVKQG 401

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKND-------LSLNYPLPIVDHK 464
              DP+G FIR W+PEL +VPT YIH P  W LD++        +  +YP PIVDH+
Sbjct: 402 IDHDPEGIFIRRWVPELAHVPTPYIHTP--WLLDRHGQERAGCRIGRDYPAPIVDHE 456



 Score = 40.0 bits (92), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
          M + LVW + DLR+ D+ AL AA   +   V+ ++I  P        +AR   FI   L+
Sbjct: 1  MYIQLVWFKRDLRLHDHPALSAAA--ARGPVLPLYIVEPSLIHAPDFAARHWTFIRGCLV 58

Query: 67 QVQKSLSQKG 76
          +++ +L++ G
Sbjct: 59 ELRANLARLG 68


>gi|158301399|ref|XP_321104.4| AGAP001958-PA [Anopheles gambiae str. PEST]
 gi|205696380|sp|Q7PYI7|CRY1_ANOGA RecName: Full=Cryptochrome-1; Short=agCRY1
 gi|78191295|gb|ABB29886.1| cryptochrome 1 [Anopheles gambiae]
 gi|157012451|gb|EAA01270.4| AGAP001958-PA [Anopheles gambiae str. PEST]
          Length = 545

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 131/513 (25%), Positives = 214/513 (41%), Gaps = 83/513 (16%)

Query: 10  HLVWLRNDLRITDN----KALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIY 62
           +++W R+ LR+ DN    +AL + C N  +   K+  +FI   E      +   +  F+ 
Sbjct: 5   NILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRMKFLL 64

Query: 63  ASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
            SL  + +     G   +VF+        DS+  L     +  + KL Y +  E     R
Sbjct: 65  ESLADLDRQFRDLGGQLLVFR-------GDSVTVLRRLFEELNIKKLCYEQDCEPIWKER 117

Query: 120 DKLLEKRLQHRVICKSFDD--------------SVLLPPGSILNHALQMYK-----VYTP 160
           D  + K      +C++ D                V+   G I     QM+      +  P
Sbjct: 118 DDAVAK------LCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHTVNIIGDP 171

Query: 161 FRKALIQNLVQADLRSLPV---PAIRLTGPV-TPSNIPRFFDYPFQAIDPMFPIGEQNAL 216
            R     N    +   +P      ++L   +  P +    +D   +     +  GE  AL
Sbjct: 172 PRPVGAPNFEYVEFGRVPALLASELKLCQQMPAPDDFGIHYDGNARIAFQKWIGGETRAL 231

Query: 217 HILRKFCKE-----KVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
             L    K+     +  YY+  +  P I G  + +S  L  G LS R  +  + + F  +
Sbjct: 232 EALGARLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDLFAKV 291

Query: 271 LIKPK---SGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKD 319
               +    G      +LIWRE++  +    P         +C+    IPW     +  +
Sbjct: 292 QSNSQFKYPGGHHITGQLIWREYFYTMSVQNPHYGEMERNPICLN---IPW-----YKPE 343

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378
              L  WK+G TGFP+IDAAMRQL   GW+H+ LR ITA+FL +  L + W  G ++F+ 
Sbjct: 344 DDSLTRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGGLWLSWEEGLQHFLK 403

Query: 379 QLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
            LLD D +   G W W +S+  +  +   +   P    +R DP+G +++ +LPEL N P 
Sbjct: 404 YLLDADWSVCAGNWMWVSSSAFERLLDSSKCTCPIALARRLDPKGDYVKRYLPELANYPA 463

Query: 438 QYIHAPHSWLDKND--------LSLNYPLPIVD 462
           Q++H P  W    +        +   YP P+VD
Sbjct: 464 QFVHEP--WKASREQQIEYGCVIGEKYPAPMVD 494


>gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries]
 gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries]
          Length = 587

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIIRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVMEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|86137240|ref|ZP_01055818.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193]
 gi|85826564|gb|EAQ46761.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193]
          Length = 502

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 126/498 (25%), Positives = 203/498 (40%), Gaps = 64/498 (12%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR +D+ AL  A       V+ +++  P+ W+Q   S RQ  F+  +L ++
Sbjct: 1   MQVVWFKRDLRCSDHAALTRAAQV--GPVLPLYVVEPDLWQQPDASHRQWCFVAETLAEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L  +G      Q S     +E L+    Q R++ L+ +      E       ++  +
Sbjct: 59  RDDLKLRGQPLVVRQGS----VVEILEGLMRQGRLSALWSH-----EESGNGWTFQRDCR 109

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
               C+            I  H LQ + V+   +           L + P  +     PV
Sbjct: 110 VAAWCRD---------NGIPWHELQNHGVWRRLQSRDGWAKRWDRLMAQPCASAPQLAPV 160

Query: 189 --TPSNIPRFFDYPFQA-IDPMFPIGEQNA-LHILRKFCKEKVYYYVEQRDIPAIQGTS- 243
              P +IP   D    + + P    G + A L  L  F  ++  +Y      P ++GTS 
Sbjct: 161 DIVPGSIPTARDLGLGSDVSPGRQSGGRGAGLERLESFLNQRGEHYQRAMSSP-LEGTSA 219

Query: 244 --QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
             +LSPYL+ G +S R+           LL   KS          WR+  R         
Sbjct: 220 CSRLSPYLAWGAVSMREVAQANAARQRALLPAEKS----------WRKSLRSFSGRLHWH 269

Query: 302 CMGKPFIPWTEKIEWNK-------------DSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           C     I    +IE+               D+  LQAW++G TG+P +DA MR L + GW
Sbjct: 270 CHFIQKIEDEPRIEFENLHRLMDDLRPKTPDAARLQAWEKGETGYPFLDACMRCLRSTGW 329

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA---STGNDSVPY 405
           ++ R+R +  +     L +DWR   ++      D        G  W+     +G   +  
Sbjct: 330 LNFRMRAMLMAVAAYHLWLDWRAPGQHLARMFTD-----YEPGIHWSQVQMQSGTTGINT 384

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND---LSLNYPLPIVD 462
            RI+NP  QG   DP G FIR WLPEL  +P +++H P  W   N    +  +YP  I D
Sbjct: 385 VRIYNPVKQGFDQDPTGIFIRIWLPELAQIPDRHLHEP--WAADNSAEVIGRHYPERIFD 442

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H  A      + +  +++
Sbjct: 443 HMAAAKAAREKIWEVRRR 460


>gi|150026082|ref|YP_001296908.1| deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772623|emb|CAL44106.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
           psychrophilum JIP02/86]
          Length = 430

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 203/447 (45%), Gaps = 43/447 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV-------FIATPEQWRQHGISARQSH 59
           +   +VW + DLR+ DN+ +  A   S+ ++I V       F  T   +++ G  + ++ 
Sbjct: 2   IKTAIVWFKTDLRVEDNETIIKAILQSE-QIIPVYCFDDSHFETTKYGFKKTG--SFRAQ 58

Query: 60  FIYASLLQVQKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           F+  SL  + K+L     G+V    +       IE +     + +  K+F  R+    E 
Sbjct: 59  FLLESLQDLDKNLRAIGSGLVITKGK-----PEIE-IPKIAKEYKAQKVFSKREVSFEEK 112

Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           + +K+++  L + R   ++F  S L     +      +  V+T FRK   Q+   A +R+
Sbjct: 113 KTEKMVQNELFKLRCELETFSTSTLYHAEDLPFSIRNIPDVFTNFRKKTEQD---ATIRT 169

Query: 177 LPVPAIRLTGP-VTPSNIPRFFDYPFQ--AIDP----MFPIGEQNALHILRK--FCKEKV 227
           +     ++  P +T  ++P   D   +   ID      F  GE  A++ L    F    +
Sbjct: 170 VFKKPEKINSPKITTLSLPTLEDLGLECKTIDSRAAIQFKGGETEAINRLNHYFFQTNSI 229

Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             Y + R+ +     +S+ SP+L++G +SPR  +N +K+   +L       ++  + EL+
Sbjct: 230 SNYKKTRNGMVGENYSSKFSPWLALGCISPRFIYNEIKK--YELQFGANDSSYWLIFELL 287

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK----DSHLLQAWKQGYTGFPIIDAAMRQ 342
           WR+F+R +   Y +    K FI    K E       +  L   W  G T    I+A M +
Sbjct: 288 WRDFFRFMFKKYQT----KFFIYLGIKTEKGNSKSLNDKLFSQWINGKTKSDFINANMLE 343

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G+M NR R   AS+   +L +DWR+G  YF  QL+D D+ SN G W + A  GND 
Sbjct: 344 LKLTGFMSNRGRQNVASYFCNELNMDWRLGAAYFEEQLIDYDVCSNWGNWAYLAGVGNDP 403

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             + R FN   Q   +D    F   WL
Sbjct: 404 RGH-RYFNIEKQASDYDKNKEFRELWL 429


>gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus]
          Length = 587

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 134/495 (27%), Positives = 204/495 (41%), Gaps = 54/495 (10%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +T+L      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITRLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            ++K      +      S  L     L+  +++     P      Q L+ + +   +PV 
Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVE 168

Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226
            I      + T PV+        +P   +  F        ++P GE  AL  L +  + K
Sbjct: 169 TITSDVIEKCTTPVSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERK 228

Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   S
Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285

Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
              +L+WREF+       P      G P      +I W+K+   L  W +G TGFP IDA
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGQTGFPWIDA 342

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S
Sbjct: 343 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LS 401

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKND 451
             +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K  
Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCL 461

Query: 452 LSLNYPLPIVDHKKA 466
           + +NYP P+V+H +A
Sbjct: 462 IGINYPKPMVNHAEA 476


>gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes]
          Length = 586

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti]
 gi|108871687|gb|EAT35912.1| DNA photolyase [Aedes aegypti]
          Length = 820

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 138/501 (27%), Positives = 204/501 (40%), Gaps = 66/501 (13%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W R  LR+ DN AL     ++      VF+  P       +   +  F+   L  + ++L
Sbjct: 49  WFRKGLRLHDNPALREGLKDA-VSFRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLDRNL 107

Query: 73  ---SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
              + +  V +           +   + CL       F        +VR   + E     
Sbjct: 108 RKLNSRLFVIRGQPADALPKLFKEWGTTCL------TFEEDPEPFGKVRDHNISE----- 156

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVY-----TPFRKALIQNLVQADLRSL-----PV 179
             +CK     V+    S ++H L  YK+         R  L  +  QA + S+     P 
Sbjct: 157 --MCKELGIEVI----SAVSHTL--YKLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPE 208

Query: 180 PAIRL---TGPVTPS--------NIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKE 225
           PAI L       TP          +P   +  F+      PI   GE  AL  L +  + 
Sbjct: 209 PAITLDTIANATTPQYEDHDDKYGVPTLEELGFETEGLKPPIWVGGETEALARLERHLER 268

Query: 226 K--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           K  V  +   +  P     SQ  LSPYL  G LS R  + +L + +    IK      S 
Sbjct: 269 KAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKACPPLSL 326

Query: 282 LNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
             +L+WREF+       P+     G P      +I W++++  L  W  G TGFP IDA 
Sbjct: 327 HGQLLWREFFYCAATKNPNFDKMAGNPIC---VQIPWDRNAEALAKWASGQTGFPWIDAI 383

Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S 
Sbjct: 384 MTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSC 442

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDL 452
            +    +F  + P   G++ DP G +IR +LP L N PT+YIH P +  +      K  +
Sbjct: 443 SSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPETVQRTAKCII 502

Query: 453 SLNYPLPIVDHKKACHHTLNQ 473
              YPLP+V+H  A    + +
Sbjct: 503 GKEYPLPMVNHAIASRANMER 523


>gi|297579336|ref|ZP_06941264.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385]
 gi|297536930|gb|EFH75763.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385]
          Length = 462

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 189/436 (43%), Gaps = 38/436 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKGI------VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
             +L  +  SLS  G       +F Y    +    +E          +T ++ +     +
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLFPYQALRHLLTQVE----------ITDIYVDAMAGSD 112

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL 174
           E +    + +      I +    S+L  P   L  AL+ +   +T FRK  ++ L    L
Sbjct: 113 ERQAIARIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-VETL---SL 166

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQ 233
            S P+   R+  P+         D   +     F  GEQ  L H    F       Y E 
Sbjct: 167 SSAPIGYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKET 226

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +  +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++ 
Sbjct: 227 RNGLDGMDYSTKFSPWLALGAVSPKTIYTMLQR--YEAVHGANDSTYWIFFELLWREYFY 284

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                Y +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR
Sbjct: 285 WYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGVTPFPIVNACMRQLNQTGYMSNR 343

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN  
Sbjct: 344 GRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLA 402

Query: 413 IQGKRFDPQGTFIRHW 428
            Q   +DP+G F+  W
Sbjct: 403 KQAHTYDPKGEFVAKW 418


>gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens]
 gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys]
 gi|74735764|sp|Q16526|CRY1_HUMAN RecName: Full=Cryptochrome-1
 gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens]
 gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens]
 gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens]
 gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
 gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
 gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens]
 gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens]
 gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct]
 gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct]
          Length = 586

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca]
 gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca]
          Length = 587

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus]
 gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus]
          Length = 587

 Score =  131 bits (329), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus]
          Length = 586

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus]
          Length = 588

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 204/496 (41%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRWVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q LV + +  L +PA
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLV-SKMEPLEMPA 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 DTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|82091801|sp|Q6ZZY0|CRY1_SYLBO RecName: Full=Cryptochrome-1
 gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin]
          Length = 620

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 137/495 (27%), Positives = 203/495 (41%), Gaps = 54/495 (10%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         + KL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NIAKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            ++K      +      S  L     L+  +++     P      Q L+ + +   +PV 
Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 168

Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226
            I      + T PV+        +P   +  F        ++P GE  AL  L +  + K
Sbjct: 169 TITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 228

Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   S
Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285

Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
              +L+WREF+       P      G P      +I W+K+   L  W +G TGFP IDA
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWIDA 342

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S
Sbjct: 343 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 401

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSW--LDKND 451
             +    +F  + P   G+R DP G +IR +LP L   P +YI+    AP S     K  
Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCI 461

Query: 452 LSLNYPLPIVDHKKA 466
           + +NYP P+V+H +A
Sbjct: 462 IGVNYPKPMVNHAEA 476


>gi|170065332|ref|XP_001867895.1| cryptochrome-1 [Culex quinquefasciatus]
 gi|167882412|gb|EDS45795.1| cryptochrome-1 [Culex quinquefasciatus]
          Length = 539

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 138/293 (47%), Gaps = 31/293 (10%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           FP GE  AL  L+ +   K +    ++   +       T+ LSPY+  G LS R     L
Sbjct: 198 FPGGETEALRRLQDYMSRKSWVCAFEKPNTSPNSLEPSTTVLSPYVKFGCLSARLFMAEL 257

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIE 315
           K+       K      S + +L+WREFY    A  P        SVC+         ++ 
Sbjct: 258 KKVLAGQ--KHSQPPVSLVGQLMWREFYYCAAAAEPNFDKMVGNSVCL---------QVP 306

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEE 374
           W  +   L AW  G TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G+ 
Sbjct: 307 WETNPEHLAAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQR 366

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
            F   LLD D A N G W W +++      +FR+++P   GK+ DP+G +I+ ++PEL  
Sbjct: 367 VFEELLLDADWALNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDPEGKYIKKYVPELAK 425

Query: 435 VPTQYIHAP-HSWLDKND-----LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            P   I+ P  + L+        +  +YP  IV H++     +++   A +++
Sbjct: 426 FPAGIIYEPWKANLETQKKLGCIIGKDYPHRIVIHEEISKKNISRMSEAYRKN 478


>gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
           corporis]
 gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
           corporis]
          Length = 506

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 141/494 (28%), Positives = 200/494 (40%), Gaps = 64/494 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +VH  W R  LR+ DN +L     NS      VF+  P       +   +  F+   L  
Sbjct: 13  TVH--WFRKGLRLHDNPSLREGIKNS-VTFRCVFVIDPWFAGSSNVGINKWRFLLQCLED 69

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL +        +    D     L     +   T L +    E     RD      L
Sbjct: 70  LDRSLRKLNSRLFVIRGQPADT----LPKLFKEWGTTNLTFEEDPEPFGRVRD------L 119

Query: 128 QHRVICKSFDDSVLLPPGSIL---NHALQMYKVYTPFRKALIQNLVQADLRSLPVP---- 180
               +CK    SV+      L    H ++      P      Q ++ A++   P P    
Sbjct: 120 NIMAMCKELGISVVSKSSHTLYKLEHIIEKNGGNPPLTYHQFQTII-ANIGPPPEPEETV 178

Query: 181 -AIRLTGPVTP--------SNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEK- 226
            A  L G  TP          +P   +  F+  D + P     GE  AL  L +  + K 
Sbjct: 179 TANLLEGSQTPLSDDHDNKYGVPTLEELGFET-DKLKPTVWSGGESEALARLERHLERKA 237

Query: 227 -VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
            V  +   +  P     SQ  LSPYL  G LS R  + +L E +    IK      S   
Sbjct: 238 WVASFGHPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLVELYKK--IKKAMPPLSLHG 295

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTE-----KIEWNKDSHLLQAWKQGYTGFPIIDA 338
           +L+WREF      FY +      F    E     +I W++++  L  W  G TGFP IDA
Sbjct: 296 QLLWREF------FYCAATKNPNFDKMNENPICVQIPWDENAQALAKWANGQTGFPWIDA 349

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S
Sbjct: 350 IMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LS 408

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL--------DK 449
             +    +F  + P   G++ DP G +IR +LP L N PT+YIH P  WL         K
Sbjct: 409 CSSFFQQFFHCYCPVRFGRKADPNGDYIRKYLPILKNFPTKYIHEP--WLAPETEQRAAK 466

Query: 450 NDLSLNYPLPIVDH 463
             +  ++PLP+V+H
Sbjct: 467 CIIGKDFPLPMVNH 480


>gi|73969270|ref|XP_862753.1| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 2
           [Canis familiaris]
          Length = 587

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1-like [Sus scrofa]
          Length = 588

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|226326775|ref|ZP_03802293.1| hypothetical protein PROPEN_00635 [Proteus penneri ATCC 35198]
 gi|225204612|gb|EEG86966.1| hypothetical protein PROPEN_00635 [Proteus penneri ATCC 35198]
          Length = 158

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 95/150 (63%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           VHLVW R+DLR+TDNKAL+ AC +  A+V A+F  TPEQW+ H ++     FI+ +LL +
Sbjct: 6   VHLVWFRHDLRVTDNKALFHACQDKQAQVHAIFTVTPEQWKAHNMALSCQAFIHNALLDL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL++  I         + ++ + +  YC Q  VT LF+N QY +NE RRDK + + L+
Sbjct: 66  STSLAKLNIPLTIVISDTYSNAADKVAEYCQQHHVTALFFNHQYALNEQRRDKKVTELLK 125

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVY 158
           ++    ++ D+V +PPG+++    +M+KV+
Sbjct: 126 NKTTVYTYHDNVFIPPGNVVTQQGEMFKVF 155


>gi|156383457|ref|XP_001632850.1| predicted protein [Nematostella vectensis]
 gi|156219912|gb|EDO40787.1| predicted protein [Nematostella vectensis]
          Length = 492

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 211/491 (42%), Gaps = 60/491 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SVH  W R DLR+ DN +L A+  N  +    +++   E  R   ISA + +F+   L  
Sbjct: 4   SVH--WFRKDLRLHDNPSLLASLDNC-STFFPIYVLDMESARASKISANRWNFLCECLEA 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE--- 124
           + + L   G      +      +I+ L     +  V +L + R+ E    +RD +++   
Sbjct: 61  LDRQLRVLGSRLFVIR----GRAIDVLPRLFHEWSVNRLTFERESEPAGRQRDTVIQMLA 116

Query: 125 -----KRLQHRV--------ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
                + LQH          + ++ D  + +    +   A Q+     P  + + + +  
Sbjct: 117 ENANVQLLQHNAHLLYDTDEVLETNDGKLPMTFDEMAKTAEQLGPPCPPC-QTVDKTVFG 175

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEK 226
           A +  + +      G      +P+  D+  + +        +  GE  A+  L    ++K
Sbjct: 176 ACITPVGLDHAEKYG------VPQLSDFGGKELGRATAKLFWKGGELEAMRRLNLALQKK 229

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNEL 285
            +          +     LSPY+  G LSP    +RL  E+   +  KP    ++    L
Sbjct: 230 KFIKPPLSADTLLASDRALSPYMRFGCLSPCYILDRLTTEYQRTMGSKPPETLYT---NL 286

Query: 286 IWREFYRHLMAFYPS--VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +WREF+    +  P     MG P      +I W +    L  WKQG TGFP IDA MRQL
Sbjct: 287 LWREFFFATASTNPDHHRMMGNPL---ALQIPWEQHPEALSLWKQGKTGFPWIDAIMRQL 343

Query: 344 NTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG--N 400
              GW+H+  R     FL +  L V W  G + F    LD + + N G W W + +   +
Sbjct: 344 REEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNAGNWLWLSCSSYVH 403

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------L 452
            +VP+   + P   GK+ DP G +IR ++PEL  +PT+++H P  W   +         +
Sbjct: 404 GAVPW---YCPVEVGKQVDPTGEYIRTFVPELRRLPTKFLHEP--WKAPSSVQREAGCIV 458

Query: 453 SLNYPLPIVDH 463
             +YP P+V+H
Sbjct: 459 GKDYPQPMVNH 469


>gi|134082999|emb|CAK42762.1| unnamed protein product [Aspergillus niger]
          Length = 567

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 147/515 (28%), Positives = 217/515 (42%), Gaps = 60/515 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   +A +V + W R DLR+ DN AL AA   + +  I +F   P    Q  +   +  F
Sbjct: 1   MPPQSAPTV-IFWHRTDLRLHDNPALQAALSLNPSTFIPIFTWDPHYAYQVRVGPNRWRF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF---------YNRQ 111
               LL+ Q  LSQ        Q         W+     Q    KLF         +   
Sbjct: 60  ----LLECQNDLSQSYRKLNPKQKL-------WVVREAPQTVFPKLFKAWGATHLVFESD 108

Query: 112 YEINEVRRDKLLEKRLQH---RVICKSF------DDSVLLPPGSILNHALQMYKVYTPFR 162
            +     RD+ + K        VI KS       D+ V    G       Q+ K      
Sbjct: 109 TDGYARERDETIRKLANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQIN 168

Query: 163 KALIQNLVQADLRSLPVP----AIRLTGPVTPSNIPRFFDY---PFQAIDPMFPIGEQNA 215
             +    V A  R +P P     +R   P    +IP   +    P QA  P    GE  A
Sbjct: 169 NGVPDRPVDAPER-IPDPLGEEKMRDISPKGDFSIPTLDELSIDPSQATSPHHG-GESIA 226

Query: 216 LHILRKFCKEKVYY---YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFV- 268
           L +L  + ++   Y   + + +  PA    Q T+ LSP+L  G LS R+ W+ +++    
Sbjct: 227 LEMLTTYLQQNEDYIATFEKPKTSPAAFHPQATTLLSPHLHFGSLSVRKFWHDVQDTLQQ 286

Query: 269 -DLLIKPKSGAFSWL-NELIWRE-FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
            +   KP S   + L  +L++RE F+    A  P     +       KI   +     + 
Sbjct: 287 RESAHKPTSDLPTNLPGQLLFREMFFAAQAALGPVYAQTR-----GNKIVRFQAEVWFRR 341

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGD 384
           WK+G TGFP IDA MRQL   GW+H+  R   A FL +    V W  G E F   L+D +
Sbjct: 342 WKEGRTGFPWIDALMRQLKNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHE 401

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP- 443
            ASN G W W + T      Y R ++P   GK++DP+G FIRH++PEL +   +YI+ P 
Sbjct: 402 TASNVGNWMWLSCTAF-FTQYNRCYSPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEPW 460

Query: 444 HSWLDKNDLSLNYPLPIVD---HKKACHHTLNQYY 475
            + L+      +YP P+ D    ++ C   + + Y
Sbjct: 461 KAPLEDQKRWKSYPEPMFDFDERRQTCIAQMKEAY 495


>gi|73969272|ref|XP_531757.2| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 1
           [Canis familiaris]
          Length = 606

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus]
 gi|82104700|sp|Q8QG61|CRY1_CHICK RecName: Full=Cryptochrome-1
 gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus]
          Length = 621

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 137/495 (27%), Positives = 203/495 (41%), Gaps = 54/495 (10%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         + KL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------SIAKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            ++K      +      S  L     L+  +++     P      Q L+ + +   +PV 
Sbjct: 112 AIKKLASEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 168

Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226
            I      + T PV+        +P   +  F        ++P GE  AL  L +  + K
Sbjct: 169 TITPEVMQKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 228

Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   S
Sbjct: 229 AW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLS 285

Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
              +L+WREF+       P      G P      +I W+K+   L  W +G TGFP IDA
Sbjct: 286 LYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWIDA 342

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S
Sbjct: 343 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 401

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSW--LDKND 451
             +    +F  + P   G+R DP G +IR +LP L   P +YI+    AP S     K  
Sbjct: 402 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCV 461

Query: 452 LSLNYPLPIVDHKKA 466
           + +NYP P+V+H +A
Sbjct: 462 IGVNYPKPMVNHAEA 476


>gi|73969274|ref|XP_862802.1| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 3
           [Canis familiaris]
          Length = 613

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKV-KKNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|254525619|ref|ZP_05137671.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9202]
 gi|221537043|gb|EEE39496.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9202]
          Length = 497

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 122/476 (25%), Positives = 204/476 (42%), Gaps = 49/476 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W + DLRI +N+AL  +  ++D  ++ +FI   E W Q   S RQ  F   S++ +
Sbjct: 4   INILWFKKDLRIDENEALNESLKDND--ILPIFIFEIEVWNQKTHSRRQWQFCKESIIDL 61

Query: 69  QKSLSQKG---IVFQYHQCSNFDD---SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           + SL + G   I+   +    F++       +  Y  Q+    + Y R  E+     +K 
Sbjct: 62  RNSLKEIGQPLIIRTGNVIKIFEEISSKFNIVGIYSHQETGDWVTYKRDQEVKLWAANK- 120

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
                  ++I + F         S+    +        ++K   + L++  LR  P+   
Sbjct: 121 -------KIIWREF------LQFSVFRGNINRDDWSKNWKKNTERELIKRPLRINPIDFD 167

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240
              G +    I   F +           G +  +  ++ F  EK+  Y +    P  +  
Sbjct: 168 --IGKIPDEKI---FSFKKDECKGSLKGGRKKGIERMQYFFNEKLNSYSKNISSPEKSFD 222

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LSPY+S G +S       LKE F    +   + +  + + L W   +   +   P 
Sbjct: 223 SCSRLSPYISWGCIS-------LKEIFYKANLHKNNNSIMFKSRLTWHCHFIQKLESEPE 275

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +     F P+ +     K++ LL  W QG TG+P IDA MR LN  GW++ R+R +  SF
Sbjct: 276 LEF-HDFHPYFKNSR-TKNTELLLLWSQGNTGYPFIDACMRSLNFNGWINFRMRAMLMSF 333

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGKRFD 419
              +L + W+       ++ +D +   +   W Q    +G  S+   RI+NP  QGK  D
Sbjct: 334 ASYNLWLPWQDSGSELANKFVDYEPGIH---WNQCQMQSGTTSINTNRIYNPIKQGKDHD 390

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL-----DKNDLSLNYPLPIVDHKKACHHT 470
           P G FI+ W+PEL N+   +IH P  WL           L Y  PIVD  K     
Sbjct: 391 PDGEFIKKWVPELKNIAIDFIHEP--WLLGKFNCDEYAKLQYNKPIVDISKTSREA 444


>gi|326912139|ref|XP_003202411.1| PREDICTED: cryptochrome-1 [Meleagris gallopavo]
          Length = 611

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 132/275 (48%), Gaps = 22/275 (8%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS R  +
Sbjct: 199 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 256

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318
            +L + +  +  K  S   S   +L+WREF+       P      G P      +I W+K
Sbjct: 257 FKLTDLYKKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDK 312

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F 
Sbjct: 313 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 372

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD D + N G W W  S  +    +F  + P   G+R DP G +IR +LP L   P 
Sbjct: 373 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 431

Query: 438 QYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466
           +YI+    AP S     K  + +NYP P+V+H +A
Sbjct: 432 KYIYDPWNAPESVQKAAKCVIGVNYPKPMVNHAEA 466


>gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae]
          Length = 548

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 128/511 (25%), Positives = 210/511 (41%), Gaps = 69/511 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R+ LR+ DN +L++A          VFI   E      +   +  ++  +L  +  
Sbjct: 6   VLWFRHGLRLHDNPSLHSALEEKGFPFFPVFIFDGETAGTKVVGYNRMRYLLEALEDLDN 65

Query: 71  SLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126
            L + G   I+ +      F    E       +  + +L + +  E +   R D +    
Sbjct: 66  QLKKHGGRLIMIKGKPNVVFRRLWE-------EFGIRRLCFEQDCEPVWRARDDSVKSAC 118

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +  V+CK      L  P +++     +  +     +  +  +        PV  I  TG
Sbjct: 119 KEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTY---QMFLHTVATIGDPPRPVSDIDFTG 175

Query: 187 PVTPSNIPRFFDYPFQAIDPM-------------------FPIGEQNALHILRKFCKEKV 227
            V   ++P  F + F   D                     +  GE  AL  +++  +  V
Sbjct: 176 -VKFGSLPESFYHEFTVYDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQ--RLAV 232

Query: 228 YY-------YVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKS 276
            Y       Y+     P + G    LSP L  G LS R  +  +++ F  +    +  +S
Sbjct: 233 EYETFLRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLATQS 292

Query: 277 GAFSWLNELIWREFYRHLMAFYPSV--CMGKPF---IPWTEKIEWNKDSHLLQAWKQGYT 331
            +     +LIWRE++  +    P+     G P    IPW E      +   LQ W +G T
Sbjct: 293 ASHFITGQLIWREYFYTMSVNNPNYGQMAGNPICLDIPWKEP-----EGDELQRWVEGRT 347

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNG 390
           GFP +DAAMRQL T GW+H+  R   ASFL +  L + W  G  +F+  LLD D +   G
Sbjct: 348 GFPFVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAG 407

Query: 391 GWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
            W W +S+  ++ +       P   G+R DP G ++R ++PEL  +P QYI+ P  W   
Sbjct: 408 NWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVQYIYEP--WKAP 465

Query: 450 ND--------LSLNYPLPIVDHKKACHHTLN 472
            D        +  +YP P+V+H  A     N
Sbjct: 466 IDIQERATCIIGKDYPAPVVNHLVAAQRNKN 496


>gi|75048080|sp|Q8WP19|CRY1_MACFA RecName: Full=Cryptochrome-1
 gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis]
          Length = 586

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 134/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS R  + +L + +  +  +  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-RNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGINYPKPMVNHAEA 476


>gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum]
 gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum]
 gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum]
          Length = 535

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 135/279 (48%), Gaps = 25/279 (8%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSP 256
           + P++  GE  AL  L +  + K +           Q  +P+  G   LSPYL  G LS 
Sbjct: 220 LPPVWQGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG---LSPYLRFGCLST 276

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKI 314
           R  + +L + +    IK      S   +L+WREF+       P+    +G P      +I
Sbjct: 277 RLFYYQLTDLYKK--IKKAFPPLSLHGQLLWREFFYCAATKNPNFDKMIGNPIC---VQI 331

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373
            W+K++  L  W  G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G 
Sbjct: 332 PWDKNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWLSWEEGM 391

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           + F   LLD D + N G W W  S  +    +F  + P   G++ DP G +IR +LP L 
Sbjct: 392 KVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPIKFGRKADPNGDYIRKYLPVLK 450

Query: 434 NVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
           N+P+QYIH P +  +      K  +  +Y LP+V+H  A
Sbjct: 451 NMPSQYIHEPWTAPEQVQRAAKCIIGKDYSLPMVNHAAA 489


>gi|224095373|ref|XP_002196554.1| PREDICTED: cryptochrome 1 (photolyase-like) [Taeniopygia guttata]
          Length = 588

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 132/275 (48%), Gaps = 22/275 (8%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS R  +
Sbjct: 177 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 234

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318
            +L + +  +  K  S   S   +L+WREF+       P      G P      +I W+K
Sbjct: 235 FKLTDLYKKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDK 290

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F 
Sbjct: 291 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 350

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD D + N G W W  S  +    +F  + P   G+R DP G +IR +LP L   P 
Sbjct: 351 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 409

Query: 438 QYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466
           +YI+    AP S     K  + +NYP P+V+H +A
Sbjct: 410 KYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEA 444


>gi|89075135|ref|ZP_01161571.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
 gi|89049089|gb|EAR54655.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
          Length = 443

 Score =  130 bits (327), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 207/449 (46%), Gaps = 55/449 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQHGISARQSHFIYASLL 66
           L W  NDLR+ DN  L+ A  + D+ +   F+   +Q    ++   +   +  F+  +L 
Sbjct: 6   LYWFTNDLRLHDNPILHQAYEHCDSLLCVYFMEPKKQQFNRYQLISVGEIRHRFLLQALQ 65

Query: 67  QVQKSLS---QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            +Q +L+   Q+ +V Q     +    IE       Q  +  ++ +R     E ++   L
Sbjct: 66  ALQSNLATLGQRLLVMQADPMVSMPVLIE-------QYGINLIYRSRHCGWYEQQQWCYL 118

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++   H    +  D   L     +    L M K Y+ FRK + QN+      S P+    
Sbjct: 119 KQCYPHLRFVE-VDTHTLYSQDQLPFPLLDMPKSYSKFRKQIEQNVT----VSSPILVPD 173

Query: 184 LTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNA--LHILRKFCKEKVYYYVEQRDIPA 238
              P        + D     I   D +   G +NA  +H+ + F       Y E R+  A
Sbjct: 174 YLPPQPNVFCSEYLDIRHVHISDNDQVEWHGGENAALMHLQQYFSSRLPSSYKETRN--A 231

Query: 239 IQG---TSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLN-ELIWREFYR 292
           I+G   +++ SP+L+ G +S +    RL+  E++     K K+ +  W+  EL+WREF++
Sbjct: 232 IEGWNNSTKFSPWLACGAISAKMIMARLQDYEKY-----KEKNSSTYWIFFELLWREFFQ 286

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA--------WKQGYTGFPIIDAAMRQLN 344
                + +  +G+       +    ++  LL +        W +G T +PI++A M+QLN
Sbjct: 287 -----WHAHAVGRDLY----RFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLN 337

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+M NR R I AS LV +L VDWR G  YF  QL+D D+A+N G WQ+ A  G DS  
Sbjct: 338 QTGYMSNRGRQIVASCLVNELSVDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSRE 397

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
             R F+   Q + FDP   FIRHW  + N
Sbjct: 398 K-RWFDLEKQTRIFDPNHHFIRHWRGDEN 425


>gi|81864807|sp|Q70AD6|CRY1_SPAJD RecName: Full=Cryptochrome-1
 gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei]
          Length = 587

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 134/496 (27%), Positives = 203/496 (40%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ + +V +      F     EW         +TKL      E     RD 
Sbjct: 60  EDLDANLRKLNSRLLVIRGQPADVFPRLFKEW--------NITKLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++     P      Q L+ + +  L +P 
Sbjct: 112 AIKKLATEAGVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLI-SKMEPLEIPV 167

Query: 182 IRLTGPV-----TP--------SNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP          +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           + +  V   + P +   S       LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 228 RAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLV-KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL   DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADWSINAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +       + K 
Sbjct: 401 SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + +NYP P+V+H +A
Sbjct: 461 LIGVNYPKPMVNHAEA 476


>gi|332292004|ref|YP_004430613.1| cryptochrome, DASH family [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170090|gb|AEE19345.1| cryptochrome, DASH family [Krokinobacter diaphorus 4H-3-7-5]
          Length = 432

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 200/444 (45%), Gaps = 40/444 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFI 61
           M   LVW RN+LR  DN +L  A   S  +VI ++   P Q++      +++      F+
Sbjct: 1   MDTALVWFRNNLRTQDNSSLTHAIA-SGKRVIGLYSFDPRQFQIGDFGFKKTEKYRAQFL 59

Query: 62  YASLLQVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
             ++  ++K+L+   I   V   H      D I+       Q  V++++  +++   E  
Sbjct: 60  IETVQNLKKNLNDLNITLIVTHEHPEVTIPDLID-------QHDVSEIYSQKEWTREENE 112

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-----ALIQNLVQAD 173
               +E+++ +      +D  +  P  +  N    + +V+T FRK     + +Q L Q  
Sbjct: 113 VTIAVEEKINNAKHYTHYDQFLFHPEDNPFNSFGDIPQVFTQFRKKCEKESTVQRL-QEK 171

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKF--CKEKVYY 229
           +++LP   +       P+      D   +     FP   GE  A + L  +    +K+ Y
Sbjct: 172 IKTLPSKNLLDKESSIPNLQELGLDTFTKDHRSAFPWNGGEDEAWNRLNNYFWNTKKLQY 231

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y + R+ +     +S+LS +L+ G +S RQ +  +K+   +  I      +  + ELIWR
Sbjct: 232 YKKTRNGLVGEDYSSKLSAWLANGSISARQIYWEVKK--FEKEIISNQDTYWLIFELIWR 289

Query: 289 EFYRHLMAFYPSVCMGKPFIPWT----EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           ++++     Y S+  G           +  +W ++    + W  G T +  ++A M +L 
Sbjct: 290 DYFK-----YVSLKHGNDLFKIGGILHKNYDWKRNDKAQREWIHGNTTYDFVNANMIELK 344

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             GWM NR R   ASF  K+   DWR+G  YF S L+D D+ SN   W + A  GND  P
Sbjct: 345 ETGWMSNRGRQNVASFWAKEQQQDWRVGAAYFESVLIDYDVHSNWANWMYNAGVGND--P 402

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428
             R FN   Q + +D  G F+R W
Sbjct: 403 RDRKFNIKRQQEMYDGNGKFVRLW 426


>gi|126666531|ref|ZP_01737509.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17]
 gi|126628919|gb|EAZ99538.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17]
          Length = 500

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 138/491 (28%), Positives = 217/491 (44%), Gaps = 49/491 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL--- 65
           ++ VW + DLR+ D+  L AACH +   V+ +++  P Q +   +S R   FI  S+   
Sbjct: 8   INAVWFKRDLRLADHAPLQAACH-AGLPVMLLYMVEPSQRQNPHLSLRHWRFIMKSISDM 66

Query: 66  -LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT--KLFYNRQY-EINEVRRDK 121
            LQ+ ++  + G+   + +C      IE L    LQQR +   LF + +  + +   RD+
Sbjct: 67  NLQLNRAGCEAGVALVHGEC------IESLTR--LQQRYSLHTLFSHEETGDASTFERDQ 118

Query: 122 LLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +    Q + V  + F  + ++    + N      + +     A  QN   ADLR L V 
Sbjct: 119 QVAHWCQQQDVNWQEFTTNAVI--RGVFNRD-GWDRHWQQVMGAPQQN---ADLRQLRV- 171

Query: 181 AIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPA 238
                  + P+ +P +     +Q  +  F  G E  A   +  F   +  +Y      P 
Sbjct: 172 -------IRPTALPDWQPPSEWQQANSQFQTGGELAANQWMESFFNARGRFYSGSVSSPI 224

Query: 239 IQGT--SQLSPYLSIGVLSPRQCW-----NRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
              T  S+LSPYL+ G +S RQ +     NR K  + D  ++  +    W    I ++F 
Sbjct: 225 ASRTFCSRLSPYLAFGNISLRQAYQQYRANRQKAGW-DRSLRAFASRLHWHCHFI-QKFE 282

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                    V  G    P+      N D   L AW+ G TG+P++DA MR L   G+++ 
Sbjct: 283 SECAMEQRPVNRGYLTYPYRTDDGVNAD---LAAWQDGRTGYPLVDACMRCLQATGYINF 339

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R +  SFL   L +DW+ G  +     LD +   +   +Q  A  G   +   RI+NP
Sbjct: 340 RMRAMLVSFLCHLLNIDWQRGVHHLARLFLDYEPGIHYSQFQMQA--GLTGINTIRIYNP 397

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
            +Q +  DPQGTFIR W+PEL  +P   +H P  WL        + L I  H  A    L
Sbjct: 398 VLQSQEQDPQGTFIRQWVPELAELPDTLLHQP--WLLTPMEEQMFDLQISQHYPAPLFEL 455

Query: 472 NQYYAAKKQSL 482
              YAA +  L
Sbjct: 456 APAYAAARDRL 466


>gi|322698418|gb|EFY90188.1| cryptochrome-2 [Metarhizium acridum CQMa 102]
          Length = 604

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 142/310 (45%), Gaps = 40/310 (12%)

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPA--- 238
           + GP     I    +  F A    +  GE  AL  L +  + K Y   + + +  PA   
Sbjct: 204 IAGPKGDFAIETLEELGFPAATTPYRGGESIALKDLAEIIENKKYTATFEKPKTSPAQFE 263

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            Q T+ LSP+L  G LS R+ + R+++          +   S   +LI+R+ Y    A  
Sbjct: 264 PQSTTLLSPFLHFGALSVREFYWRVQDVVEAYGKGASTPPASLTGQLIFRDMYFAAQAAV 323

Query: 299 PSV---CMGKP---FIPW-------------TEKIEWNKD--SHLLQAWKQGYTGFPIID 337
            +      G P   FIPW             T+K + + D      Q WK+G TGFP ID
Sbjct: 324 GAKFTQTAGNPYCRFIPWHLPSERDSQTGLVTDKYKVDSDDAEKWFQRWKRGVTGFPWID 383

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A MRQL   GWMH+  R   A FL +    VDW  G E F   LLD + A N G WQW +
Sbjct: 384 ALMRQLVHTGWMHHLGRHSVACFLTRGGCYVDWERGAEVFEVHLLDHEPACNAGNWQWLS 443

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456
            T   S  YFR ++P   G+++D  G  IR W+PEL N+ ++YI+ P            +
Sbjct: 444 CTAFFSQ-YFRCYSPVSFGQKWDKNGDLIRKWVPELKNLDSKYIYEP------------W 490

Query: 457 PLPIVDHKKA 466
             PI D KKA
Sbjct: 491 KAPIQDQKKA 500


>gi|89097604|ref|ZP_01170493.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911]
 gi|89087900|gb|EAR67012.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911]
          Length = 474

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 208/493 (42%), Gaps = 67/493 (13%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW R DLRI D++ L  AC +++ +VI ++IA P   R+  +S R   F    L Q+
Sbjct: 1   MNIVWFRKDLRIHDHRPLAEACASAE-EVIPLYIAEPLSGRKE-VSRRHIQFAAEGLEQL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L   G      Q +  D   E L  Y        LF++ +Y+ +    D+L  + + 
Sbjct: 59  DEGLRGLGGRLFAAQGTIIDILEELLKRYG----DFSLFFHLEYDTD---TDRLAAEWMG 111

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                K        PPG      L+  K  + FRK   +++++    + P  A+R+    
Sbjct: 112 ----SKGLPFYPFHPPGQ-----LEKPKSKSRFRKLWQESMLEE--LTDPPAAVRV---- 156

Query: 189 TPSNIPRFFDYPFQ----------AIDPMFPIGEQNALHILRKFCKEKVYYYVE--QRDI 236
            P  +P F +   Q          AI      GE+  +  L  F  E++  Y +  Q+ +
Sbjct: 157 -PEKVPDFLNLSVQKALGMKVKGEAIRFGQNGGEKRGIETLEFFIGEQLANYEKNYQKPL 215

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            +   +S+LSPYL+ G +SPR  ++   ++  +     K                + L  
Sbjct: 216 ASSFSSSRLSPYLAYGNISPRLAYHEAAKKAENCTETEK----------------QQLSL 259

Query: 297 FYPSVCMGKPFIPWTEK-IEWNK---------DSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           F   +      + W EK  + N          D+ LL+ W+ G TG P +DA+MR L   
Sbjct: 260 FQSKLLERSEALQWQEKETQANAADSNSARAHDAELLEKWRTGNTGIPSVDASMRCLRKT 319

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GW++   R + A F    LL+DW           LD + A +    +     G       
Sbjct: 320 GWLNYSSRRMLAGFACNILLLDWEKAALELALLFLDHEPAVHMK--EMGILAGKSGSKTV 377

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           +I +P   GK  D  G+FIR ++PEL +V   YIH P  WL      L YP PI D +KA
Sbjct: 378 KIIDPVKWGKELDTDGSFIRRYVPELKDVDAAYIHEP--WLYPGFFQLGYPAPICDVRKA 435

Query: 467 CHHTLNQYYAAKK 479
                 Q    KK
Sbjct: 436 IKQAKRQIEDQKK 448


>gi|55251265|emb|CAH69046.1| cryptochrome 1a [Danio rerio]
          Length = 556

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 157/350 (44%), Gaps = 39/350 (11%)

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT----GPVTPS---------NIP 194
           L+  +++    +P      Q L+ + + ++  PA  +T    GP T            +P
Sbjct: 135 LDKIIELNGGQSPLTYKRFQTLI-SRMEAVETPAETITAEVMGPCTTPLSDDHDEKFGVP 193

Query: 195 RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QL 245
              +  F        ++P GE  AL  L +  + K +  V   + P +   S       L
Sbjct: 194 SLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGL 251

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CM 303
           SPYL  G LS R  + +L + +  +  K  S   S   +L+WREF+       P      
Sbjct: 252 SPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKME 310

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G P      +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL +
Sbjct: 311 GNPIC---VQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 367

Query: 364 -DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            DL + W  G + F   LLD D + N G W W  S  +    +F  + P   G+R DP G
Sbjct: 368 GDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVSFGRRTDPNG 426

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
            +IR +LP L   P +YI+ P +  +      K  + ++YP+P+V H +A
Sbjct: 427 DYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476


>gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus]
 gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus]
          Length = 582

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 207/492 (42%), Gaps = 55/492 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SVH  W R  LR+ DN AL AA   + A +  ++I  P       +   +  F+  SL  
Sbjct: 14  SVH--WFRRGLRLHDNPALQAALRGA-ASLRCIYILDPWFAASSAVGINRWRFLLQSLED 70

Query: 68  VQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +  SL +   +  V +      F     EW         VT+L +    E     RD  +
Sbjct: 71  LDNSLRKLNSRLFVVRGQPTDVFPRLFKEW--------GVTRLTFEYDSEPFGKERDAAI 122

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182
            K  +   +    ++S  L     L+  +++     P      Q ++ + +L   PV +I
Sbjct: 123 IKLAKEAGVEVVIENSHTL---YDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSI 179

Query: 183 RLTGPVTPS-----------NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVY 228
                 T              +P      +P   + P ++  GE  AL  L K  + K +
Sbjct: 180 VSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAW 239

Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
             V   + P +   S       LSPYL  G LS R  + RL E +  +  +  +   S  
Sbjct: 240 --VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLY 296

Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +L+WREF+       P      G P      +I W+K+   L  W +G TGFP IDA M
Sbjct: 297 GQLLWREFFYTAATNNPKFDRMEGNPIC---IQIPWDKNPEALAKWAEGKTGFPWIDAIM 353

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL + W  G   F   LLD D + N G W W + + 
Sbjct: 354 TQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSA 413

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453
                +F  + P   G+R DP G +++ +LP+L   P++YI+ P +  +      K  + 
Sbjct: 414 FFQQ-FFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIG 472

Query: 454 LNYPLPIVDHKK 465
           ++YP P+V+H +
Sbjct: 473 VDYPKPMVNHAE 484


>gi|224003307|ref|XP_002291325.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana
           CCMP1335]
 gi|220973101|gb|EED91432.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana
           CCMP1335]
          Length = 571

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/271 (33%), Positives = 138/271 (50%), Gaps = 29/271 (10%)

Query: 211 GEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           GE  AL  ++ +   K+ +  Y + R+ +     +++ +P+L++G +SPR    R    +
Sbjct: 252 GETFALRRVKDYIWDKDLLKLYFDTRNGMIGSDYSTKFAPWLALGNVSPRYI-ARECSRY 310

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLM------AFYPSVCMGKPFIPWTEKIEWNKDSH 321
            +  ++ KS  +  L EL+ R+ ++          FY +  +GK       + +W  D  
Sbjct: 311 EEQRVQNKSTYWVVL-ELLIRDHFKFFAKKHGDKVFYLTGNIGKQ---RGSERKWGMDRK 366

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
            +QAW+ G TGFP++DA MR+L   G+M NR R   ASFL  DL +DWR G EYF   LL
Sbjct: 367 KIQAWQDGMTGFPLVDANMRELAATGFMSNRGRQNVASFLTIDLNIDWRYGGEYFEETLL 426

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D+ SN G W  AA      +  F I     Q K +D  G ++R W PEL NVP ++IH
Sbjct: 427 DYDVHSNWGNWCSAAGMTGGRLNRFNIVK---QSKDYDFGGEYVRLWCPELKNVPDKHIH 483

Query: 442 APHSWLDKNDL----------SLNYPLPIVD 462
           +P  W    ++            +YP PIVD
Sbjct: 484 SP--WEMSGEMMEECGVKIGHGGDYPSPIVD 512


>gi|118572251|sp|Q8QG60|CRY2_CHICK RecName: Full=Cryptochrome-2
          Length = 582

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 207/492 (42%), Gaps = 55/492 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SVH  W R  LR+ DN AL AA   + A +  ++I  P       +   +  F+  SL  
Sbjct: 14  SVH--WFRRGLRLHDNPALQAALRGA-ASLRCIYILDPWFAASSAVGINRWRFLLQSLED 70

Query: 68  VQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +  SL +   +  V +      F     EW         VT+L +    E     RD  +
Sbjct: 71  LDNSLRKLNSRLFVVRGQPTDVFPRLFKEW--------GVTRLAFEYDSEPFGKERDAAI 122

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182
            K  +   +    ++S  L     L+  +++     P      Q ++ + +L   PV +I
Sbjct: 123 IKLAKEAGVEVVIENSHTL---YNLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSI 179

Query: 183 RLTGPVTPS-----------NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVY 228
                 T              +P      +P   + P ++  GE  AL  L K  + K +
Sbjct: 180 VSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAW 239

Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
             V   + P +   S       LSPYL  G LS R  + RL E +  +  +  +   S  
Sbjct: 240 --VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLY 296

Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +L+WREF+       P      G P      +I W+K+   L  W +G TGFP IDA M
Sbjct: 297 GQLLWREFFYTAATNNPKFDRMEGNPI---CIQIPWDKNPEALAKWAEGKTGFPWIDAIM 353

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL + W  G   F   LLD D + N G W W + + 
Sbjct: 354 TQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSA 413

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453
                +F  + P   G+R DP G +++ +LP+L   P++YI+ P +  +      K  + 
Sbjct: 414 FFQQ-FFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIG 472

Query: 454 LNYPLPIVDHKK 465
           ++YP P+V+H +
Sbjct: 473 VDYPKPMVNHAE 484


>gi|18858461|ref|NP_571864.1| cryptochrome 1a isoform 2 [Danio rerio]
 gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio]
          Length = 556

 Score =  129 bits (325), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 132/275 (48%), Gaps = 22/275 (8%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS R  +
Sbjct: 209 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 266

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318
            +L + +  +  K  S   S   +L+WREF+       P      G P      +I W+K
Sbjct: 267 FKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDK 322

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F 
Sbjct: 323 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 382

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD D + N G W W  S  +    +F  + P   G+R DP G +IR +LP L   P 
Sbjct: 383 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVSFGRRTDPNGDYIRRYLPVLRGFPA 441

Query: 438 QYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
           +YI+ P +  +      K  + ++YP+P+V H +A
Sbjct: 442 KYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476


>gi|229515204|ref|ZP_04404664.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae TMA 21]
 gi|229347909|gb|EEO12868.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae TMA 21]
          Length = 462

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 189/436 (43%), Gaps = 38/436 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKG------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
             +L  +  SLS  G      ++  Y    +    +E          +T ++ +     +
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTLLLPYQALRHLLTQVE----------ITDIYVDAMAGSD 112

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL 174
           E +    + +      I +    S+L  P   L  A++ +   +T FRK  ++ L    L
Sbjct: 113 ERQAIARIHQDFSSVHIHQQALHSLLSEPQ--LPFAIEALPSTFTQFRKQ-VETL---SL 166

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQ 233
            S P+   R+  P+         D   +     F  GEQ  L H    F       Y E 
Sbjct: 167 SSAPIGYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKET 226

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +  +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++ 
Sbjct: 227 RNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFY 284

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                Y +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR
Sbjct: 285 WYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNR 343

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN  
Sbjct: 344 GRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGS-RQFNLA 402

Query: 413 IQGKRFDPQGTFIRHW 428
            Q   +DP+G F+  W
Sbjct: 403 KQAHTYDPKGEFVAKW 418


>gi|194378884|dbj|BAG57993.1| unnamed protein product [Homo sapiens]
          Length = 461

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/288 (32%), Positives = 136/288 (47%), Gaps = 29/288 (10%)

Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249
             +P + + P ++  GE  AL  L K  + K +  V   + P +   S       LSPYL
Sbjct: 85  LGFPTEGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 142

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304
             G LS R  + RL     DL  K K  +    S   +L+WREF+       P      G
Sbjct: 143 RFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEG 198

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
            P      +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + 
Sbjct: 199 NPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 255

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL V W  G   F   LLD D + N G W W + +      +F  + P   G+R DP G 
Sbjct: 256 DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGD 314

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465
           +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +
Sbjct: 315 YIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAE 362


>gi|153800458|ref|ZP_01955044.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3]
 gi|124124084|gb|EAY42827.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3]
          Length = 462

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 187/430 (43%), Gaps = 26/430 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G          +    + L     Q  VT ++ +     +E +   
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEVTDIYVDAMAGSDERQSIA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180
            + +      I +    S+L  P   L  AL+ +   +T FRK  ++ L    L S P+ 
Sbjct: 119 HIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-VETL---SLSSAPIG 172

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
             R+  P+         D   +     F  GEQ  L H    F       Y E R+ +  
Sbjct: 173 YPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKETRNGLDG 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      Y
Sbjct: 233 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 290

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR R + A
Sbjct: 291 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 349

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   +
Sbjct: 350 SCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGS-RQFNLAKQAHTY 408

Query: 419 DPQGTFIRHW 428
           DP+G F+  W
Sbjct: 409 DPKGEFVAKW 418


>gi|121727641|ref|ZP_01680744.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52]
 gi|121630028|gb|EAX62435.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52]
          Length = 462

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 125/440 (28%), Positives = 191/440 (43%), Gaps = 46/440 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNTLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G                W+      Q +  L    Q EI ++  D 
Sbjct: 63  NQTLADLNHSLSTLGQKL-------------WVTPLLPYQALRHLL--TQVEITDIYVDA 107

Query: 122 LLEKRLQHRVICKSFDD--SVLLPPGSI--------LNHALQ-MYKVYTPFRKALIQNLV 170
           ++    + + I +   D  SVL+   ++        L  AL+ +   +T FRK  ++ L 
Sbjct: 108 VVGSD-ERQAIARIHQDFPSVLIHQQALHSLLSEPQLPFALEALPSTFTQFRKQ-VETL- 164

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYY 229
              L S P+   R+  P+         D   +     F  GEQ  L H    F       
Sbjct: 165 --SLSSAPIGYPRVLPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSMLPSC 222

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y E R+ +  +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WR
Sbjct: 223 YKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWR 280

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E++      Y +       I   + +        LQ WK G T FPI++A MRQLN  G+
Sbjct: 281 EYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGVTPFPIVNACMRQLNQTGY 339

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R 
Sbjct: 340 MSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQ 398

Query: 409 FNPTIQGKRFDPQGTFIRHW 428
           FN   Q   +DP+G F+  W
Sbjct: 399 FNLEKQAHTYDPKGEFVAKW 418


>gi|116267987|ref|NP_001070765.1| cryptochrome 1a isoform 1 [Danio rerio]
 gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio]
          Length = 619

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 157/350 (44%), Gaps = 39/350 (11%)

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT----GPVTPS---------NIP 194
           L+  +++    +P      Q L+ + + ++  PA  +T    GP T            +P
Sbjct: 135 LDKIIELNGGQSPLTYKRFQTLI-SRMEAVETPAETITAEVMGPCTTPLSDDHDEKFGVP 193

Query: 195 RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QL 245
              +  F        ++P GE  AL  L +  + K +  V   + P +   S       L
Sbjct: 194 SLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGL 251

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CM 303
           SPYL  G LS R  + +L + +  +  K  S   S   +L+WREF+       P      
Sbjct: 252 SPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKME 310

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G P      +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL +
Sbjct: 311 GNPIC---VQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 367

Query: 364 -DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            DL + W  G + F   LLD D + N G W W  S  +    +F  + P   G+R DP G
Sbjct: 368 GDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVSFGRRTDPNG 426

Query: 423 TFIRHWLPELNNVPTQYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466
            +IR +LP L   P +YI+    AP S     K  + ++YP+P+V H +A
Sbjct: 427 DYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476


>gi|55251266|emb|CAH69047.1| cryptochrome 1a [Danio rerio]
 gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio]
 gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio]
          Length = 619

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 157/350 (44%), Gaps = 39/350 (11%)

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT----GPVTPS---------NIP 194
           L+  +++    +P      Q L+ + + ++  PA  +T    GP T            +P
Sbjct: 135 LDKIIELNGGQSPLTYKRFQTLI-SRMEAVETPAETITAEVMGPCTTPLSDDHDEKFGVP 193

Query: 195 RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QL 245
              +  F        ++P GE  AL  L +  + K +  V   + P +   S       L
Sbjct: 194 SLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGL 251

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CM 303
           SPYL  G LS R  + +L + +  +  K  S   S   +L+WREF+       P      
Sbjct: 252 SPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKME 310

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G P      +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL +
Sbjct: 311 GNPIC---VQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 367

Query: 364 -DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            DL + W  G + F   LLD D + N G W W  S  +    +F  + P   G+R DP G
Sbjct: 368 GDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVSFGRRTDPNG 426

Query: 423 TFIRHWLPELNNVPTQYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466
            +IR +LP L   P +YI+    AP S     K  + ++YP+P+V H +A
Sbjct: 427 DYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476


>gi|119618202|gb|EAW97796.1| cryptochrome 1 (photolyase-like), isoform CRA_b [Homo sapiens]
          Length = 427

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 132/275 (48%), Gaps = 22/275 (8%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS R  +
Sbjct: 50  VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 107

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318
            +L + +  +  K  S   S   +L+WREF+       P      G P      +I W+K
Sbjct: 108 FKLTDLYKKV-KKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDK 163

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F 
Sbjct: 164 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 223

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD D + N G W W  S  +    +F  + P   G+R DP G +IR +LP L   P 
Sbjct: 224 ELLLDADWSINAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 282

Query: 438 QYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466
           +YI+ P +       + K  + +NYP P+V+H +A
Sbjct: 283 KYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEA 317


>gi|149635020|ref|XP_001507425.1| PREDICTED: similar to Cryptochrome 2 (photolyase-like)
           [Ornithorhynchus anatinus]
          Length = 582

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 135/288 (46%), Gaps = 29/288 (10%)

Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249
             +P   + P ++  GE  AL  L K  + K +  V   + P +   S       LSPYL
Sbjct: 204 LGFPTDGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 261

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304
             G LS R  + RL     DL  K K  +    S   +L+WREF+       P      G
Sbjct: 262 RFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPRFDRMEG 317

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
            P      +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + 
Sbjct: 318 NPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 374

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL V W  G   F   LLD D + N G W W + +      +F  + P   G+R DP G 
Sbjct: 375 DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGD 433

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465
           FIR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +
Sbjct: 434 FIRRYLPKLKAFPSRYIYEPWNAPESVQKAAKCVIGVDYPRPIVNHAE 481


>gi|269961220|ref|ZP_06175588.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834171|gb|EEZ88262.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 493

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 209/453 (46%), Gaps = 46/453 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++LVWL+ DLR+TD++ L  A  +S+   + ++I  P        SAR   FI+ SL  
Sbjct: 3   TINLVWLKRDLRLTDHRPLQHAL-SSEHPTVLLYIVEPMLLDDPHYSARHWRFIWQSLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDS-IEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + ++LS  G     HQ S    S I+ L +   Q  +  +F +++  ++    RD+ +  
Sbjct: 62  MNETLSALG-----HQVSVMSGSTIDCLSAIQNQFNINAIFSHQEIGLDCTFERDQQVSA 116

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHA---LQMYKVYTPFRKALIQN--LVQADLRSLPV 179
            LQ H +    F+       G+++  A   L   K +    +A I++  L  A L +L  
Sbjct: 117 WLQAHSIPWHEFEH------GAVIRGAKDRLGWDKHWDTVMRAEIEDIDLESASLIALDA 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            A+       PS + +        I  M   G   A   +  F + +   Y      P  
Sbjct: 171 KALGCLFTPPPSWLEK--------IKGMQTGGSSLAWQTMEDFFQRRGRDYYRSISSPTA 222

Query: 240 QGT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
             T  ++LSPYL+ G +S R+ +  L + +     +    A S  + L W   + H M  
Sbjct: 223 SRTACTRLSPYLAWGNISLREVYQYLLQHWQVAGFRRSLIALS--SRLHW---HCHFMQK 277

Query: 298 YPSVC------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           + S C      + K + P  ++    +D+ LL AWK G TG P+IDA MR L+  G+++ 
Sbjct: 278 FESECEMEFRYVNKAYDPLLQQAS-VRDAALLDAWKSGTTGIPLIDACMRCLHHTGYINF 336

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFN 410
           R+R +  SFL   + +DWR G  +     LD +   +   +Q  A  TG +++   RI+N
Sbjct: 337 RMRAMLVSFLTHHMNMDWRDGVTHLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYN 393

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           PT Q +  D  G FI  W+PEL  VPT  +  P
Sbjct: 394 PTKQAQEHDANGEFIHKWIPELAMVPTPLLFEP 426


>gi|255025620|ref|ZP_05297606.1| hypothetical protein LmonocytFSL_03450 [Listeria monocytogenes FSL
           J2-003]
          Length = 127

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/121 (49%), Positives = 83/121 (68%), Gaps = 6/121 (4%)

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           +L+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNP  Q ++FDP G F
Sbjct: 1   MLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPITQSQKFDPTGKF 60

Query: 425 IRHWLPELNNVPTQYIHAPH--SWLDKND----LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR ++ EL N+P ++IH P   S +++ +    L  +YP PI+DHK+     + +Y  +K
Sbjct: 61  IREYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIIDHKERRKLAIARYEFSK 120

Query: 479 K 479
           +
Sbjct: 121 E 121


>gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula]
          Length = 587

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 131/275 (47%), Gaps = 22/275 (8%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K    V   + P +   S       LSPYL  G LS R  +
Sbjct: 209 VWPGGETEALTRLERHLERKAS--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 266

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318
            +L + +  +  K  S   S   +L+WREF+       P      G P      +I W+K
Sbjct: 267 FKLTDLYKKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDK 322

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F 
Sbjct: 323 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 382

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD D + N G W W  S  +    +F  + P   G+R DP G +IR +LP L   P 
Sbjct: 383 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 441

Query: 438 QYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466
           +YI+    AP S     K  + +NYP P+V+H +A
Sbjct: 442 KYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEA 476


>gi|118572249|sp|Q5IZC5|CRY1_ERIRU RecName: Full=Cryptochrome-1
 gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula]
          Length = 620

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 131/275 (47%), Gaps = 22/275 (8%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K    V   + P +   S       LSPYL  G LS R  +
Sbjct: 209 VWPGGETEALTRLERHLERKAS--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 266

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318
            +L + +  +  K  S   S   +L+WREF+       P      G P      +I W+K
Sbjct: 267 FKLTDLYKKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VQIPWDK 322

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F 
Sbjct: 323 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 382

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD D + N G W W  S  +    +F  + P   G+R DP G +IR +LP L   P 
Sbjct: 383 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 441

Query: 438 QYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466
           +YI+    AP S     K  + +NYP P+V+H +A
Sbjct: 442 KYIYDPWNAPESIQKAAKCIIGVNYPKPMVNHAEA 476


>gi|254227923|ref|ZP_04921353.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|262396094|ref|YP_003287947.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
           Ex25]
 gi|151939419|gb|EDN58247.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|262339688|gb|ACY53482.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
           Ex25]
          Length = 444

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 125/439 (28%), Positives = 201/439 (45%), Gaps = 45/439 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYA 63
           + L W  NDLR+ DN  L  AC   D  +      +   + QH      +   +  F+ A
Sbjct: 5   IGLYWFTNDLRLHDNPLLIDACAEMDELICLYCRPSVTPYLQHFAQETSLGRAKLQFLEA 64

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL ++ +SL++ G      + + +  +I++  S+     +T ++ +     +E +  +  
Sbjct: 65  SLNELNQSLAKLGQRLWTVELTPYQ-AIKYAISHF---GITHIYADAFAGSDEQQALERA 120

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            K   H V  K      LL    +     Q+   +T FRK  ++ L   DL S P  ++ 
Sbjct: 121 IKGTPH-VNIKQQAIRTLLREEQLPFELRQLPATFTKFRKQ-VEGL---DL-SQPYESVH 174

Query: 184 LTGPV-TPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQR-DIPAIQ 240
              PV +  N P    Y F    P+F  GE + L H  R F       Y + R ++  ++
Sbjct: 175 ALPPVPSGMNFPTATTYYFDT-KPVFDGGELSGLEHCRRYFASSLASEYKQTRNELDGME 233

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELIWREF------ 290
            +++ SP+L+ G +SP   +  LK+       + K+GA     W+  EL+WRE+      
Sbjct: 234 YSTKFSPWLAHGCVSPTIIYAMLKQ------YEQKNGANDSTYWIYFELLWREYFYWYAR 287

Query: 291 -YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            Y+  +  +  +    P   +         +   + WK+G T FPI++A M QLN  G+M
Sbjct: 288 KYQQKLFRFGGIANQPPLTSFY--------AQRFKQWKKGETPFPIVNACMHQLNKTGYM 339

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            NR R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R F
Sbjct: 340 SNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRGS-RQF 398

Query: 410 NPTIQGKRFDPQGTFIRHW 428
           N   Q + +DP  +FI  W
Sbjct: 399 NLEKQTQTYDPDFSFIDKW 417


>gi|149637939|ref|XP_001508613.1| PREDICTED: similar to cryptochrome 1 [Ornithorhynchus anatinus]
          Length = 577

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 132/275 (48%), Gaps = 22/275 (8%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS R  +
Sbjct: 170 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 227

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318
            +L + +  +  K  S   S   +L+WREF+       P      G P      +I W++
Sbjct: 228 FKLTDLYKKV-KKNSSPPLSLYGQLLWREFFYTAATSNPRFDKMEGNPI---CVQIPWDR 283

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F 
Sbjct: 284 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 343

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD D + N G W W  S  +    +F  + P   G+R DP G +IR +LP L   P 
Sbjct: 344 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPA 402

Query: 438 QYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
           +YI+ P +  +      K  + +NYP P+V+H +A
Sbjct: 403 KYIYDPWNAPEGIQKAAKCIIGVNYPKPMVNHAEA 437


>gi|332836252|ref|XP_003313049.1| PREDICTED: cryptochrome-2 isoform 2 [Pan troglodytes]
          Length = 532

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 136/289 (47%), Gaps = 29/289 (10%)

Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249
             +P + + P ++  GE  AL  L K  + K +  V   + P +   S       LSPYL
Sbjct: 156 LGFPTEGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 213

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304
             G LS R  + RL     DL  K K  +    S   +L+WREF+       P      G
Sbjct: 214 RFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEG 269

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
            P      +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + 
Sbjct: 270 NPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 326

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL V W  G   F   LLD D + N G W W + +      +F  + P   G+R DP G 
Sbjct: 327 DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGD 385

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
           +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 386 YIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 434


>gi|188536103|ref|NP_001120929.1| cryptochrome-2 isoform 2 [Homo sapiens]
          Length = 532

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 136/289 (47%), Gaps = 29/289 (10%)

Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249
             +P + + P ++  GE  AL  L K  + K +  V   + P +   S       LSPYL
Sbjct: 156 LGFPTEGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 213

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304
             G LS R  + RL     DL  K K  +    S   +L+WREF+       P      G
Sbjct: 214 RFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEG 269

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
            P      +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + 
Sbjct: 270 NPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 326

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL V W  G   F   LLD D + N G W W + +      +F  + P   G+R DP G 
Sbjct: 327 DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGD 385

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
           +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 386 YIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 434


>gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi]
          Length = 525

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 125/515 (24%), Positives = 208/515 (40%), Gaps = 80/515 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R+ LR+ DN +L+AA  +       +F+   E      +   +  ++  +L  +  
Sbjct: 6   VLWFRHGLRLHDNPSLHAALEDRSVPFFPIFVFDGETAGTKLVGYNRMRYLLEALEDLDN 65

Query: 71  SLSQKG---IVFQYHQCSNFDDSIE--WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
              + G   I+ +      F    E   +   C +Q    L+  R   +    R+     
Sbjct: 66  QFKKYGGKLIMLKGKPSDVFRRLWEEFGIRKLCFEQDCEPLWRARDDGVKSACREI---- 121

Query: 126 RLQHRVICKSF-------DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                V C+ +        D+V+   G I     QM+          +  +        P
Sbjct: 122 ----GVACREYVSHTLWEPDTVIRANGGIPPLTYQMF----------LHTVTIVGDPPRP 167

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM-------------------FPIGEQNAL-HI 218
           VP + ++G +T   +P  F   F   D                     +  GE  AL  +
Sbjct: 168 VPDVDMSG-ITFGTLPDCFYQEFTVFDKTPKPEDLGVFLENEDIRMIRWVGGETAALKQM 226

Query: 219 LRKFCKEKVYY----YVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            ++   E   +    Y+     P + G    LSP L  G LS R  +  +++ F  +   
Sbjct: 227 QQRLAVEHETFRKGSYLPTHGSPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQG 286

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNKDSHLLQA 325
             S A     +LIWRE++  +    P+        +C+    IPW      + +   LQ 
Sbjct: 287 RLSSAHFITGQLIWREYFYTMSVNNPNYGQMADNPICLD---IPWK-----HPEGDELQR 338

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGD 384
           W +G TGFP IDAAMRQL   GW+H+ +R   ASFL +  L + W  G  +F+  LLD D
Sbjct: 339 WIEGRTGFPFIDAAMRQLRAEGWLHHAVRNTVASFLTRGTLWLSWEHGLNHFLKYLLDAD 398

Query: 385 LASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
            +   G W W +S+  ++ +       P   G+R DP G ++R ++PE+  +P  YI+ P
Sbjct: 399 WSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPEIARMPVDYIYEP 458

Query: 444 -HSWLDKND-----LSLNYPLPIVDHKKACHHTLN 472
             + LD        +  +YP P+V+H  A     N
Sbjct: 459 WKAPLDVQTRASCIIGKHYPAPLVNHIVAAQRNRN 493


>gi|253998728|ref|YP_003050791.1| cryptochrome, DASH family [Methylovorus sp. SIP3-4]
 gi|253985407|gb|ACT50264.1| cryptochrome, DASH family [Methylovorus sp. SIP3-4]
          Length = 454

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 144/301 (47%), Gaps = 42/301 (13%)

Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPV--------TPSNIPRFFDYPFQAIDP-- 206
            +T FR AL +  VQA   + P+P+I+   P+         PS +         A +P  
Sbjct: 163 TFTTFRHALERAHVQA---ARPLPSIKQLPPLPSHALLNAIPSEVASDGTDHAMACEPWP 219

Query: 207 -----MFPIG-------EQNALHILRKFCKEKV--YYYVEQRDIPAIQGTSQLSPYLSIG 252
                 FP+G       EQ AL  L+++C+ ++   Y   +  +  +  +S+ SP+L+ G
Sbjct: 220 YDARSAFPLGSSGFDGSEQAALQHLQQYCQRRLPHSYKSTRNGLIGVDYSSKWSPWLATG 279

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR-----HLMAFYPSVCMGKPF 307
            LS RQ W  + + F       +S  + W  EL+WR+ +R     H    Y +  +G+  
Sbjct: 280 ALSARQAWAAI-QAFEAEHGANESSYWLWF-ELLWRDHFRWLHFKHGKRLYRARGLGEAH 337

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
           +P       + D      W +G TG P IDA MR+L   G++ NR+R   AS+L+ DL  
Sbjct: 338 VP-------SHDPDHFARWCRGETGQPFIDAGMRELAATGYLSNRMRQNVASYLIHDLGC 390

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR G  +F SQLLD D+ SN G W + +  G D     R FNP  Q + +D  G++   
Sbjct: 391 DWRAGAAWFESQLLDYDVYSNQGNWLYLSGRGTDPR-QGRRFNPDKQAQDYDADGSYRAL 449

Query: 428 W 428
           W
Sbjct: 450 W 450


>gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori]
 gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori]
 gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori]
          Length = 536

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 125/519 (24%), Positives = 210/519 (40%), Gaps = 72/519 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R+ LR+ DN +L++A   +      +FI   E      +   +  ++  +L  + K
Sbjct: 6   VLWFRHGLRLHDNPSLHSALEETSGPFFPIFIFDGETAGTKVVGYNRMRYLLEALDDLDK 65

Query: 71  SLSQKG---IVFQYHQCSNFDDSIE--WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
              + G   ++ +    + F    E   +   C +Q    ++  R   +    R+  +  
Sbjct: 66  QFKKYGGRLLLVKGKPSAVFRRLWEEFGIRKLCFEQDCEPVWRPRDESVKTACREIGVTC 125

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           R +H        D+V+   G I     QM+          +  +        PV   +L 
Sbjct: 126 R-EHVSHTLWEPDTVIKANGGIPPLTYQMF----------LHTVATIGDPPRPVDNAKLR 174

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-------------------FPIGEQNALHILR------ 220
           G +    +P  F   F   D +                   +  GE  AL  ++      
Sbjct: 175 G-IKFGTLPLCFYEEFTVYDKVPNPEDLGVFLENEDIRMIRWVGGETAALKQMQHRLAVE 233

Query: 221 --KFCKEKVYYYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
              FC+     Y+     P + G    LSP L  G LS R+ +  L++ F  +       
Sbjct: 234 YETFCRGS---YLPTHGSPDLLGPPISLSPALRFGCLSVRKFYWSLQDLFQQVHQGSLCS 290

Query: 278 AFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                 +LIWRE++  +    P         +C+    IPW      + +   L+ W  G
Sbjct: 291 TQYITGQLIWREYFYTMSVNNPHYGQMTDNPICLD---IPWK-----SPEGDELERWASG 342

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASN 388
            TGFP +DAAMRQL   GW+H+ +R   ASFL +  L + W  G  +F+  LLD D +  
Sbjct: 343 RTGFPFVDAAMRQLRLEGWLHHAVRNTVASFLTRGTLWLSWEHGLAHFLKYLLDADWSVC 402

Query: 389 NGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSW 446
            G W W +S+  ++ +       P   G+R DP G ++R ++PEL  VPT+YI+ P  + 
Sbjct: 403 AGNWMWVSSSAFEALLDSGECACPVRLGQRLDPSGEYVRRYVPELARVPTEYIYEPWKAP 462

Query: 447 LDKND-----LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           LD  +     +  +YP P+V+H  A     N     K +
Sbjct: 463 LDVQERANCIIGKDYPAPVVNHIVAAQRNRNAMEDTKME 501


>gi|153214304|ref|ZP_01949321.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587]
 gi|124115452|gb|EAY34272.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587]
          Length = 462

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 187/430 (43%), Gaps = 26/430 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G          +    + L     Q  +T ++ +     +E +   
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQAIA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180
            + +      I +    S+L  P   L  AL+ +   +T FRK  ++ L    L S P+ 
Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-VETL---SLSSAPIG 172

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
             R+  P+         D   +     F  GEQ  L H    F       Y E R+ +  
Sbjct: 173 YPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLDG 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      Y
Sbjct: 233 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 290

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR R + A
Sbjct: 291 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 349

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   +
Sbjct: 350 SCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 408

Query: 419 DPQGTFIRHW 428
           DP+G F+  W
Sbjct: 409 DPKGEFVAKW 418


>gi|322707152|gb|EFY98731.1| cryptochrome-2 [Metarhizium anisopliae ARSEF 23]
          Length = 566

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 144/325 (44%), Gaps = 40/325 (12%)

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPA--- 238
           + GP     I    +  F A    +  GE  AL  L    K K Y   + + +  PA   
Sbjct: 165 IAGPKGDFAIETLEELGFPAATTPYRGGESIALKNLADIAKNKKYTATFEKPKTSPAQFE 224

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            Q T+ LSP+L  G LS R+ + R+++          +   S   +LI+R+ Y    A  
Sbjct: 225 PQSTTLLSPFLHFGALSVREFYWRVQDVVEAYGKGASTPPASLTGQLIFRDMYFAAQAAV 284

Query: 299 PSV---CMGKP---FIPWTEKIEWNKDSHLL---------------QAWKQGYTGFPIID 337
            +      G P   FIPW    E +  + L+               Q WK+G TGFP ID
Sbjct: 285 GAKFTQTAGNPYCRFIPWHLPSERDSQTGLVTDKYTVDSDDAEKWFQRWKRGVTGFPWID 344

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A MRQL   GW+H+  R   A FL +    VDW  G E F   LLD + A N G WQW +
Sbjct: 345 ALMRQLLHTGWIHHLGRHSLACFLTRGGCYVDWERGAEVFEVHLLDHEPACNAGNWQWLS 404

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456
            T   S  YFR ++P   G+++D  G  IR W+PEL N+ ++YI+ P            +
Sbjct: 405 CTAFFSQ-YFRCYSPVSFGQKWDKNGDLIRKWVPELKNLDSKYIYEP------------W 451

Query: 457 PLPIVDHKKACHHTLNQYYAAKKQS 481
             PI D KKA    +      ++Q 
Sbjct: 452 KAPIQDQKKAGVRVVGDGLGDQEQG 476


>gi|136255185|ref|NP_001077099.1| cryptochrome 2 [Apis mellifera]
 gi|133754347|gb|ABO38437.1| cryptochrome 2 [Apis mellifera]
          Length = 570

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 132/281 (46%), Gaps = 29/281 (10%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSP 256
           + P++  GE  AL  L +  + K +           Q  +P+  G   LSPYL  G LS 
Sbjct: 224 LPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG---LSPYLRFGCLST 280

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKI 314
           R  + +L + +    IK      S   +L+WREF+       P+     G P      +I
Sbjct: 281 RLFYYQLTDLYKK--IKKAVPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPIC---VQI 335

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373
            W+K+   L  W  G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G 
Sbjct: 336 PWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGM 395

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           + F   LLD D + N G W W  S  +    +F  + P   G++ DP G +IR +LP L 
Sbjct: 396 KVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLK 454

Query: 434 NVPTQYIHAPHSW--------LDKNDLSLNYPLPIVDHKKA 466
           N PT+YIH P  W          K  +  +Y LP+V+H K+
Sbjct: 455 NFPTRYIHEP--WNAPLNVQRAAKCIIGKDYSLPMVNHSKS 493


>gi|160334812|gb|ABX24814.1| cryptochrome 1 [Capsella rubella]
          Length = 155

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 97/152 (63%), Gaps = 8/152 (5%)

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
            +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD
Sbjct: 3   FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH- 441
            DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH 
Sbjct: 63  ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122

Query: 442 ---APHSWLDKNDLSL--NYPLPIV--DHKKA 466
              AP S L    + L  NYP PIV  D  KA
Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVXLDEAKA 154


>gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae]
          Length = 961

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/274 (33%), Positives = 133/274 (48%), Gaps = 19/274 (6%)

Query: 206 PMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWN 261
           P++  GE  AL  L +  + K  V  +   +  P     SQ  LSPYL  G LS R  + 
Sbjct: 209 PVWIGGETEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 268

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKD 319
           +L + +    IK      S   +L+WREF+       P+     G P      +I W+++
Sbjct: 269 QLTDLYKK--IKKACPPLSLHGQLLWREFFYCAATKNPTFDKMAGNPICV---QIPWDRN 323

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378
           +  L  W  G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F  
Sbjct: 324 AEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEE 383

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D + N G W W  S  +    +F  + P   G++ DP G +IR +LP L N PT+
Sbjct: 384 LLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTR 442

Query: 439 YIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
           +IH P +  +      K  +  +YPLP+V+H  A
Sbjct: 443 FIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIA 476


>gi|158291667|ref|XP_313179.3| AGAP004261-PA [Anopheles gambiae str. PEST]
 gi|157017656|gb|EAA44753.3| AGAP004261-PA [Anopheles gambiae str. PEST]
          Length = 961

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/274 (33%), Positives = 133/274 (48%), Gaps = 19/274 (6%)

Query: 206 PMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWN 261
           P++  GE  AL  L +  + K  V  +   +  P     SQ  LSPYL  G LS R  + 
Sbjct: 209 PVWIGGETEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 268

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKD 319
           +L + +    IK      S   +L+WREF+       P+     G P      +I W+++
Sbjct: 269 QLTDLYKK--IKKACPPLSLHGQLLWREFFYCAATKNPTFDKMAGNPICV---QIPWDRN 323

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378
           +  L  W  G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F  
Sbjct: 324 AEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEE 383

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D + N G W W  S  +    +F  + P   G++ DP G +IR +LP L N PT+
Sbjct: 384 LLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTR 442

Query: 439 YIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
           +IH P +  +      K  +  +YPLP+V+H  A
Sbjct: 443 FIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIA 476


>gi|160334784|gb|ABX24800.1| cryptochrome 1 [Capsella rubella]
 gi|160334786|gb|ABX24801.1| cryptochrome 1 [Capsella rubella]
 gi|160334788|gb|ABX24802.1| cryptochrome 1 [Capsella rubella]
 gi|160334790|gb|ABX24803.1| cryptochrome 1 [Capsella rubella]
 gi|160334792|gb|ABX24804.1| cryptochrome 1 [Capsella rubella]
 gi|160334794|gb|ABX24805.1| cryptochrome 1 [Capsella rubella]
 gi|160334796|gb|ABX24806.1| cryptochrome 1 [Capsella rubella]
 gi|160334798|gb|ABX24807.1| cryptochrome 1 [Capsella rubella]
 gi|160334800|gb|ABX24808.1| cryptochrome 1 [Capsella rubella]
 gi|160334802|gb|ABX24809.1| cryptochrome 1 [Capsella rubella]
 gi|160334804|gb|ABX24810.1| cryptochrome 1 [Capsella rubella]
 gi|160334806|gb|ABX24811.1| cryptochrome 1 [Capsella rubella]
 gi|160334808|gb|ABX24812.1| cryptochrome 1 [Capsella rubella]
 gi|160334810|gb|ABX24813.1| cryptochrome 1 [Capsella rubella]
 gi|160334814|gb|ABX24815.1| cryptochrome 1 [Capsella rubella]
 gi|160334816|gb|ABX24816.1| cryptochrome 1 [Capsella rubella]
 gi|160334818|gb|ABX24817.1| cryptochrome 1 [Capsella rubella]
 gi|160334820|gb|ABX24818.1| cryptochrome 1 [Capsella rubella]
 gi|160334822|gb|ABX24819.1| cryptochrome 1 [Capsella rubella]
 gi|160334824|gb|ABX24820.1| cryptochrome 1 [Capsella rubella]
 gi|160334826|gb|ABX24821.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334830|gb|ABX24823.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334832|gb|ABX24824.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334834|gb|ABX24825.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334836|gb|ABX24826.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334838|gb|ABX24827.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334840|gb|ABX24828.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334842|gb|ABX24829.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334844|gb|ABX24830.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334848|gb|ABX24832.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334850|gb|ABX24833.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334852|gb|ABX24834.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334854|gb|ABX24835.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334858|gb|ABX24837.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334860|gb|ABX24838.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334864|gb|ABX24840.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334866|gb|ABX24841.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334868|gb|ABX24842.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334870|gb|ABX24843.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334872|gb|ABX24844.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334874|gb|ABX24845.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334876|gb|ABX24846.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334878|gb|ABX24847.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334880|gb|ABX24848.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334882|gb|ABX24849.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334884|gb|ABX24850.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334886|gb|ABX24851.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334888|gb|ABX24852.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334890|gb|ABX24853.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334892|gb|ABX24854.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334894|gb|ABX24855.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334896|gb|ABX24856.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334898|gb|ABX24857.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334900|gb|ABX24858.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334902|gb|ABX24859.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334904|gb|ABX24860.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334906|gb|ABX24861.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334908|gb|ABX24862.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334918|gb|ABX24867.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334922|gb|ABX24869.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334924|gb|ABX24870.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334926|gb|ABX24871.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334928|gb|ABX24872.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334930|gb|ABX24873.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334932|gb|ABX24874.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334934|gb|ABX24875.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334936|gb|ABX24876.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334938|gb|ABX24877.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334940|gb|ABX24878.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334942|gb|ABX24879.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334944|gb|ABX24880.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334946|gb|ABX24881.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334948|gb|ABX24882.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334950|gb|ABX24883.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334952|gb|ABX24884.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334954|gb|ABX24885.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334956|gb|ABX24886.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334958|gb|ABX24887.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334960|gb|ABX24888.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334962|gb|ABX24889.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334964|gb|ABX24890.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334966|gb|ABX24891.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334968|gb|ABX24892.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334970|gb|ABX24893.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334972|gb|ABX24894.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334974|gb|ABX24895.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334976|gb|ABX24896.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334978|gb|ABX24897.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334980|gb|ABX24898.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334982|gb|ABX24899.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334984|gb|ABX24900.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334986|gb|ABX24901.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334988|gb|ABX24902.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334990|gb|ABX24903.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334992|gb|ABX24904.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334994|gb|ABX24905.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334996|gb|ABX24906.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334998|gb|ABX24907.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335000|gb|ABX24908.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335002|gb|ABX24909.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335004|gb|ABX24910.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335006|gb|ABX24911.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335008|gb|ABX24912.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765935|gb|ACX49998.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765943|gb|ACX50002.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765947|gb|ACX50004.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765949|gb|ACX50005.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765951|gb|ACX50006.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 155

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 97/152 (63%), Gaps = 8/152 (5%)

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
            +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD
Sbjct: 3   FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH- 441
            DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH 
Sbjct: 63  ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122

Query: 442 ---APHSWLDKNDLSL--NYPLPIV--DHKKA 466
              AP S L    + L  NYP PIV  D  KA
Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVGLDEAKA 154


>gi|91217386|ref|ZP_01254346.1| deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC
           700755]
 gi|91184494|gb|EAS70877.1| deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC
           700755]
          Length = 436

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 199/440 (45%), Gaps = 30/440 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR--QHGISARQSH---FIYA 63
           + +VW RNDLR  D K+L+ AC + +A V+ V+   P  +   ++G    + +   F+  
Sbjct: 7   ITIVWFRNDLRTRDQKSLFDACQSENA-VLGVYCFDPSHFETTRYGFKKTEKYRAKFLIE 65

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           S+ Q+  +L    I          +   E  + Y     +T +FY  ++   E R +  +
Sbjct: 66  SVEQLSDNLQDLNISLHIAHKHPSEVFKELSERYA----ITSVFYQTEWTREEKRVEAKV 121

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAI 182
           +  L +    +++D  +  P          + +VYT FRK   +   Q+++R  +P P  
Sbjct: 122 KSALPNADFIENYDQFLFHPEDLPYESFQDIPEVYTNFRKKCEK---QSEVRQKVPAPQP 178

Query: 183 RLTGPVTP--SNIPRFFDYPFQ--AIDP--MFPI--GEQNALHILRKFC--KEKVYYYVE 232
           R T  +    +  P   D   +    DP   FP   GE  A   +  +    +K+ YY +
Sbjct: 179 RPTHHLLEERNQAPNLSDLGLENFETDPRSAFPFKGGENEAWKRIEHYFWDTKKLQYYKK 238

Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ +     +S+ S +L+ G +S    ++ ++    +  +K     +  + ELIWR+++
Sbjct: 239 TRNGLLGTDYSSKFSAWLANGSISAVSIYHEVRA--FEKQVKKNQDTYWLIFELIWRDYF 296

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +++   + +       +   +  +W  +   L+ W  G T    ++A M ++   G+M N
Sbjct: 297 KYISLKHGNKIFQIGGVL-NKDYDWGNNKKALRDWINGNTPEDFVNANMIEIKETGFMSN 355

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R    S+  K+   DWRIG  YF S L+D D+ SN G W + +  GND  P  R FN 
Sbjct: 356 RGRQNVNSYWAKEWKQDWRIGAAYFESMLVDYDVHSNWGNWMYNSGVGND--PRDRKFNI 413

Query: 412 TIQGKRFDPQGTFIRHWLPE 431
             Q  R+D  G + R WL +
Sbjct: 414 KNQADRYDSGGKYQRTWLQD 433


>gi|160335068|gb|ABX24942.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 186

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 107/183 (58%), Gaps = 11/183 (6%)

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           N   EE V+L +K           +  RE+ R++   +P     +P +   +   W  D 
Sbjct: 6   NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
           +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   L
Sbjct: 55  NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +I
Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWI 174

Query: 441 HAP 443
           H P
Sbjct: 175 HHP 177


>gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio]
          Length = 606

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 135/273 (49%), Gaps = 18/273 (6%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS R  +
Sbjct: 209 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 266

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
            +L + +  +  K  + + S   +L+WREF+       P     + F P   +I W+++ 
Sbjct: 267 FKLTDLYRKVK-KNSTPSLSLYGQLLWREFFYTAATNNPHFDKME-FNPICVQIPWDRNP 324

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQ 379
             L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   
Sbjct: 325 EALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           LLD D + N G W W  S  +    +F  + P   G+R DP G +IR +LP L   P ++
Sbjct: 385 LLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKF 443

Query: 440 IH----APHSW--LDKNDLSLNYPLPIVDHKKA 466
           I+    AP S   + K  + ++YP P+V+H +A
Sbjct: 444 IYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 476


>gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio]
          Length = 606

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 135/273 (49%), Gaps = 18/273 (6%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS R  +
Sbjct: 209 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 266

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
            +L + +  +  K  + + S   +L+WREF+       P     + F P   +I W+++ 
Sbjct: 267 FKLTDLYRKVK-KNSTPSLSLYGQLLWREFFYTAATNNPHFDKME-FNPICVQIPWDRNP 324

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQ 379
             L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   
Sbjct: 325 EALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           LLD D + N G W W  S  +    +F  + P   G+R DP G +IR +LP L   P ++
Sbjct: 385 LLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKF 443

Query: 440 IH----APHSW--LDKNDLSLNYPLPIVDHKKA 466
           I+    AP S   + K  + ++YP P+V+H +A
Sbjct: 444 IYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 476


>gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio]
 gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio]
          Length = 606

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/273 (32%), Positives = 135/273 (49%), Gaps = 18/273 (6%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS R  +
Sbjct: 209 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 266

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
            +L + +  +  K  + + S   +L+WREF+       P     + F P   +I W+++ 
Sbjct: 267 FKLTDLYRKVK-KNSTPSLSLYGQLLWREFFYTAATNNPHFDKME-FNPICVQIPWDRNP 324

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQ 379
             L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   
Sbjct: 325 EALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           LLD D + N G W W  S  +    +F  + P   G+R DP G +IR +LP L   P ++
Sbjct: 385 LLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKF 443

Query: 440 IH----APHSW--LDKNDLSLNYPLPIVDHKKA 466
           I+    AP S   + K  + ++YP P+V+H +A
Sbjct: 444 IYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 476


>gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio]
 gi|169158298|emb|CAQ13305.1| cryptochrome 2a [Danio rerio]
          Length = 658

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 130/493 (26%), Positives = 205/493 (41%), Gaps = 55/493 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+H  W R  LR+ DN AL  A   +D  V  V+   P       +   +  F+   L  
Sbjct: 5   SIH--WFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDD 61

Query: 68  VQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +    + L+ +  V +    + F     EW        ++++L +    E     RD  +
Sbjct: 62  LDSNLRKLNSRLFVVRGQPANVFPRLFKEW--------KISRLTFEYDSEPFGKERDAAI 113

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182
           +K      +      S  L     L+  +++     P      Q L+ + D   +PV  +
Sbjct: 114 KKLAMEAGVEVIVKTSHTL---YNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETL 170

Query: 183 R---LTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY 228
               +   VTP +      Y   +++ +           +P GE  AL  + +  + K +
Sbjct: 171 SNSIMGCCVTPVSEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAW 230

Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
             V   + P +   S       LSPYL  G LS R  + +L + +  +  K  +   S  
Sbjct: 231 --VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKV-KKTSTPPLSLY 287

Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +L+WREF+       P      G P      +I W+K+   L  W +  TGFP IDA M
Sbjct: 288 GQLLWREFFYTAATTNPRFDKMEGNPIC---VRIPWDKNPEALAKWAEAKTGFPWIDAIM 344

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  
Sbjct: 345 TQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCS 403

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453
           +    +F  + P   G+R DP G FIR +LP L   P +YI+ P +  D      K  + 
Sbjct: 404 SFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIG 463

Query: 454 LNYPLPIVDHKKA 466
           ++YP P+V+H +A
Sbjct: 464 VHYPKPMVNHAEA 476


>gi|260778007|ref|ZP_05886900.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606020|gb|EEX32305.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 487

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 128/491 (26%), Positives = 213/491 (43%), Gaps = 44/491 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   SD   +  ++  P+       S R   F++ SL  +
Sbjct: 4   INLVWLKRDLRLTDHAPLNAAL-CSDTPTLIFYLFEPDLLANAHYSERHWRFVWQSLSDI 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127
              L+          C    D + +L+    Q ++  L+ +++  ++   +RDK + K  
Sbjct: 63  NGHLAPFNAKVMVGGC----DVLSFLEKMAKQFQIEALYSHQETGLDVTFQRDKQVLKWC 118

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + R I    F +  ++       H  + +           Q +++A + S  + A  L  
Sbjct: 119 KDRQISWYEFANGAVVRGCKERKHWDKNW-----------QRVMRAPIESNALSAGALL- 166

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKV--YYYVEQRDIPAIQG 241
           P    +    F  P   +  +  I   G +     L  F   +V  YY+       + + 
Sbjct: 167 PNLNDDFGIVFTPPEAWLSKVPGIQTGGVKVGWATLNDFFTRRVKHYYFSISSPSASREA 226

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAF 297
            S+LSPYL+ G LS R+ +  L   + D  ++    AFS    W    I +    H M F
Sbjct: 227 CSRLSPYLAWGNLSLREVYQFLLSHWNDKGMRRSLIAFSSRLHWHCHFIQKFESEHQMEF 286

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
               C+ + +    +      + HL  AWK+G TG+P++DA MR L   G+++ R+R + 
Sbjct: 287 R---CVNRGYESLIQHSAKTNNDHL-TAWKEGNTGYPLVDACMRCLAHTGYLNFRMRAML 342

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFL   L  DWR G  +  S  LD +   +    Q+   +G   +   RI+NPT Q   
Sbjct: 343 VSFLTHHLAQDWRNGVAHLASLFLDFEPGIHYA--QFQMQSGVTGINTIRIYNPTKQAID 400

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL--------PIVDHKKACHH 469
            DP G FI+ W+PEL +VP   +  P  W      +L Y +        PI+D   A   
Sbjct: 401 HDPDGVFIKKWVPELKDVPISLLFEP--WKMSAMEALMYDIEGSSIYLNPIIDLDTAGRE 458

Query: 470 TLNQYYAAKKQ 480
             ++ +A KK+
Sbjct: 459 ARDRLWAWKKK 469


>gi|169158299|emb|CAQ13306.1| cryptochrome 2a [Danio rerio]
          Length = 659

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 130/493 (26%), Positives = 205/493 (41%), Gaps = 55/493 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+H  W R  LR+ DN AL  A   +D  V  V+   P       +   +  F+   L  
Sbjct: 5   SIH--WFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDD 61

Query: 68  VQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +    + L+ +  V +    + F     EW        ++++L +    E     RD  +
Sbjct: 62  LDSNLRKLNSRLFVVRGQPANVFPRLFKEW--------KISRLTFEYDSEPFGKERDAAI 113

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182
           +K      +      S  L     L+  +++     P      Q L+ + D   +PV  +
Sbjct: 114 KKLAMEAGVEVIVKTSHTL---YNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETL 170

Query: 183 R---LTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY 228
               +   VTP +      Y   +++ +           +P GE  AL  + +  + K +
Sbjct: 171 SNSIMGCCVTPVSEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAW 230

Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
             V   + P +   S       LSPYL  G LS R  + +L + +  +  K  +   S  
Sbjct: 231 --VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKV-KKTSTPPLSLY 287

Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +L+WREF+       P      G P      +I W+K+   L  W +  TGFP IDA M
Sbjct: 288 GQLLWREFFYTAATTNPRFDKMEGNPIC---VRIPWDKNPEALAKWAEAKTGFPWIDAIM 344

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  
Sbjct: 345 TQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCS 403

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453
           +    +F  + P   G+R DP G FIR +LP L   P +YI+ P +  D      K  + 
Sbjct: 404 SFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIG 463

Query: 454 LNYPLPIVDHKKA 466
           ++YP P+V+H +A
Sbjct: 464 VHYPKPMVNHAEA 476


>gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4]
 gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4]
          Length = 694

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 146/554 (26%), Positives = 227/554 (40%), Gaps = 118/554 (21%)

Query: 11  LVWLRNDLRITDNKALYAACHN-------SDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           +VW R DLRI DN AL AA           D ++  + I    + ++      +  F+  
Sbjct: 100 IVWFRRDLRIHDNLALDAAMRAQMQLQKAGDEEMALLPIYILHRPKRQRCGPVRFQFLLE 159

Query: 64  SLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           ++  + +S+++  G +          D+ E L +      VT LF+        V RD  
Sbjct: 160 AIEDLARSIAKLDGRLLVLS-----GDAEEVLRTVIAAWGVTDLFFEAGVAHYAVDRDNR 214

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----SLP 178
           +      R I KS D +V    G  L +  ++ ++ +       + L++   +    + P
Sbjct: 215 V------RAIAKSLDVNVTTIRGVTLYNPHEIIRLNSGQAPTDYERLLEITEKMPQPTQP 268

Query: 179 VPA---------------------------------IRLTGPVTPSNIPRFFDYPFQAID 205
           +PA                                   + G V  +    F   P  A  
Sbjct: 269 IPAPVKLLNAACFSTDKLFSLLEDVCQQNPSEADVIAGVAGDVKKTESELFVAPPLTAFG 328

Query: 206 -----PMFPI--GEQNALHILRKFCKE--KVYYYVEQRDIP-AIQG--TSQLSPYLSIGV 253
                P  P+  GE  A+  L  FC++  +V  + + +  P +I G  T+ LS YLS G 
Sbjct: 329 LTPPTPHAPLIGGESAAMKRLDDFCEDERRVGQFEKPKTSPVSIDGPSTTTLSAYLSFGC 388

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSG---AFSWLNELIWREFYRHLMAFYPSVCMGKPFI-- 308
           LS R+ + R+   F+ L    + G     +   +L+WREF      FY  +C  + F   
Sbjct: 389 LSAREFFYRIM--FIQLQYPHRPGLPTQVTLEGQLMWREF------FYCYMCGTRNFDSQ 440

Query: 309 ---PWTEKIEW----------------------NKDSHL----LQAWKQGYTGFPIIDAA 339
              P  ++I+W                        D  L    LQ WK G TGFP IDA 
Sbjct: 441 ELNPSCKQIDWRLLNEYYVSHPEYDEQEPKKVTEADEKLAMRQLQCWKDGRTGFPWIDAV 500

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           MRQ+N  GW H+  R   A FL + +L + W  G  YF  +++D D   N G W W +++
Sbjct: 501 MRQINQEGWTHHAGRHAVACFLTRGVLYISWLRGATYFQEKMIDLDWPINVGNWLWVSAS 560

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI----HAPHSWLDKND--L 452
                 Y R+ +P+   +R+D QG FIR ++P L N+P +Y+     AP       D  +
Sbjct: 561 CF-FTNYRRMASPSTFPQRWDQQGQFIRKYIPALRNMPDKYVFEPWKAPLKVQRDADCLI 619

Query: 453 SLNYPLPIVDHKKA 466
             NYP PIVD K A
Sbjct: 620 GKNYPFPIVDSKLA 633


>gi|325105098|ref|YP_004274752.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
 gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
          Length = 433

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 193/441 (43%), Gaps = 35/441 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65
           LVW RNDLRI DN+ L  A   S  +++ V+I  P  +       +++      FI  S+
Sbjct: 7   LVWFRNDLRIHDNEILIEATLKS-TEIVPVYIFDPRYYTDTSYGTKKTGKLRAQFIIDSV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++KSL   G      +        E L     +  V +++++R+    E      +E 
Sbjct: 66  TDLKKSLKALGGDLLVVKGK----PEEVLPQLIKEYHVDEVYHHREVASEETDISSAVED 121

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPA-I 182
            L + +V  K F    L     +      +  ++  FRK + +   + ++R     P  I
Sbjct: 122 ALWKSQVNLKHFIGHTLYHKEDLPFPIKDIPDLFAKFRKKVER---EGEIRDPFETPGQI 178

Query: 183 RLTGPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEK---VYYYVEQRDI 236
            +   +  S +P   D  F+    +D     GE + L+ L ++  EK     Y  ++  +
Sbjct: 179 SVPDSLASSEVPALEDLGFERSEQLDASIKGGESSGLNRLNEYLWEKDLLKEYKAKRNLL 238

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRH 293
                 SQLSP+LS+G +SPR+ +  LK          K G  +     NEL++R+F+R 
Sbjct: 239 TGFNNNSQLSPWLSLGCISPRKVYWELKR-----YEHEKGGTDNINLLFNELLFRDFFRF 293

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +   + +      F+   + +  N +  +L + WK G TG  ++DA M +L   G M  +
Sbjct: 294 MFKKHSTAY----FVDIAQPMSLNAEQQVLFEKWKNGETGIDLVDANMLELKHRGTMAYK 349

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   A++L+ +L + W  G  YF   L+D   ASN G W   A  G         FN  
Sbjct: 350 GRQTVAAYLISELELPWFYGAAYFEEMLIDYATASNWGNWALFAGIGTPQKEVNPAFNLD 409

Query: 413 IQGKRFDPQGTFIRHWLPELN 433
            Q K  DP+G +I+ WL EL 
Sbjct: 410 KQIKDSDPKGDYIKVWLSELT 430


>gi|88704316|ref|ZP_01102030.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
 gi|88701367|gb|EAQ98472.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
          Length = 434

 Score =  128 bits (321), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 123/450 (27%), Positives = 188/450 (41%), Gaps = 40/450 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W RNDLR+ DN  L  A    +  ++ ++          G+  ++  FI  SL  +Q 
Sbjct: 4   IYWFRNDLRLHDNPGLVEAAKADELLLLYLWPLQRAWCNTQGLGEQRERFITESLKALQD 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      Q S      + +  Y     V  +  ++     E R  ++L +RL   
Sbjct: 64  DLQPLGQSLLVLQGSPELVIPDLVRDYG----VDAVHASQCAGSYETRAVRVLRERLH-- 117

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLTG 186
           +       + L     I     ++ + ++PFR+ + +NL       DL  LP P      
Sbjct: 118 IPVTEHAGNTLFRRSDIKALCPELPRSFSPFRRKVEKNLEPLKPSRDLPQLPPPPA---- 173

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKE-KVYYYVEQRD-IPAIQ 240
            VT      F   P  A+ P   +    G       L++F     +  Y E R+ +  ++
Sbjct: 174 -VT------FHRIPDAAVKPPVGLPLRGGSSAGQRRLKQFLHSGAIRSYKETRNCLDPLE 226

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELIWREFYRHLMA 296
           G+S LSP+L++G LS R+    + E       + + GA     WL  EL+WRE++ H  A
Sbjct: 227 GSSTLSPWLALGSLSAREVAAAVHEH------EAQEGANESTYWLVFELLWREYFFH-RA 279

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
               V + +      +      +      W  G T  P+++A M QL   GWM NR R I
Sbjct: 280 LQDGVSLFRHGGREGKVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMSNRGRQI 339

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS L+ D  +DWR G  +F   L+D D+ SN G WQ+ A  G D     R FN   Q  
Sbjct: 340 AASCLIHDFGIDWRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPR-GGRAFNIEKQTA 398

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           ++DP G FI  W  E    P  Y+     W
Sbjct: 399 QYDPDGVFIAKWDGERAAQPM-YVTDAADW 427


>gi|307190470|gb|EFN74495.1| Cryptochrome-1 [Camponotus floridanus]
          Length = 525

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 134/291 (46%), Gaps = 40/291 (13%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSP 256
           + P++  GE  AL  L +  + K +           Q  +P+  G   LSPYL  G LS 
Sbjct: 226 LPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG---LSPYLRFGCLST 282

Query: 257 R-------QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI- 308
           R         + +++++   ++IK      S   +L+WREF      FY +      F  
Sbjct: 283 RLFYYQLTDLYKKVQDDCNPIVIKKAVPPLSLHGQLLWREF------FYCAATKNSNFDR 336

Query: 309 ----PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
               P   +I W+K+   L  W  G TGFP IDA M QL   GW+H+  R   A FL + 
Sbjct: 337 MQGNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRG 396

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G + F   LLD D + N G W W  S  +    +F  + P   G++ DP G 
Sbjct: 397 DLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKADPNGD 455

Query: 424 FIRHWLPELNNVPTQYIHAP--------HSWLDKNDLSLNYPLPIVDHKKA 466
           +IR +LP L N PT+YIH P        H+   K  +   Y LP+V+H K 
Sbjct: 456 YIRRYLPVLKNFPTRYIHEPWNAPLSIQHA--AKCVIGKEYSLPMVNHNKT 504


>gi|119476980|ref|ZP_01617261.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2143]
 gi|119449787|gb|EAW31024.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2143]
          Length = 528

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/479 (24%), Positives = 202/479 (42%), Gaps = 41/479 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++++VW + DLRI D+  L AA   S   ++ +++  P+ W++   S R  HFI+  L  
Sbjct: 23  TINVVWFKRDLRINDHGPLLAASKLS-LPILPLYVVEPDYWKKSFSSRRHWHFIHDCLTD 81

Query: 68  VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ--YEINEVRRDKLL 123
           +  ++S  G  +V +             +   C         YN Q  Y   E       
Sbjct: 82  LNTAVSSLGQPLVIK-------------VGDVCAAIENIHSDYNVQGIYAHEETGNLWTY 128

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++ +  R IC+  +  +   P + +   L     ++  R   +   ++   + L      
Sbjct: 129 QRDINVRKICELNNIPIHEYPLNGVVRKLASRNDWSVIRTKRMVEKIREKPKELKPLQRY 188

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242
           ++  + P + P F +   + +  +   G   A+  LR F   +   Y+     P +    
Sbjct: 189 ISDKLPPKDDPMFGE---EFVGTVQNGGRNAAVDDLRGFLNHRSSGYLRHISGPRLSAVY 245

Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWREFYRHLMAF 297
            S+LS +L+ G LS R+    +K+    L    K        ++ + L WR  +   +  
Sbjct: 246 CSRLSAHLAWGSLSVREVVQSVKKRQQQLNTDDKKRFGRNLTAFNSRLAWRCHFIQKIED 305

Query: 298 YPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            PS+   CM   F    E    + +    QAW  G+TG+P IDA MR L   GW+  R+R
Sbjct: 306 QPSIETHCMHPAFEGLREN---DHNEERYQAWATGHTGYPFIDACMRNLIADGWITFRMR 362

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF    L +DWR+  ++      D +   +    Q    +G   +   R++NP  Q
Sbjct: 363 AMLVSFASYQLWLDWRVIGDHLARLFTDFEPGIHYS--QLQMQSGVTGINAMRVYNPVKQ 420

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKAC 467
               DP G +IR W+PEL ++P ++IH P +W    +D     L   Y  PIVD+  A 
Sbjct: 421 SIEHDPNGDYIRKWVPELADLPIEFIHEPWTWGKNLIDDASCILGTVYSEPIVDNASAA 479


>gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio]
 gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio]
          Length = 655

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 131/493 (26%), Positives = 204/493 (41%), Gaps = 55/493 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+H  W R  LR+ DN AL  A   +D  V  V+   P       +   +  F+   L  
Sbjct: 5   SIH--WFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDD 61

Query: 68  VQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +    + L+ +  V +    + F     EW        ++++L +    E     RD  +
Sbjct: 62  LDSNLRKLNSRLFVVRGQPANVFPRLFKEW--------KISRLTFEYDSEPFGKERDAAI 113

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182
           +K      +      S  L     L+  +++     P      Q L+ + D   +PV  +
Sbjct: 114 KKLAMEAGVEVIVKTSHTL---YNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETL 170

Query: 183 R---LTGPVTPS--------NIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVY 228
               +   VTP          +P   +  F        ++P GE  AL  + +  + K +
Sbjct: 171 SNSIMGCCVTPVAEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAW 230

Query: 229 YYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
             V   + P +   S       LSPYL  G LS R  + +L + +  +  K  +   S  
Sbjct: 231 --VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKV-KKTSTPPLSLY 287

Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +L+WREF+       P      G P      +I W+K+   L  W +  TGFP IDA M
Sbjct: 288 GQLLWREFFYTAATTNPRFDKMEGNPIC---VRIPWDKNPEALAKWAEAKTGFPWIDAIM 344

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  
Sbjct: 345 TQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCS 403

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453
           +    +F  + P   G+R DP G FIR +LP L   P +YI+ P +  D      K  + 
Sbjct: 404 SFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIG 463

Query: 454 LNYPLPIVDHKKA 466
           ++YP P+V+H +A
Sbjct: 464 VHYPKPMVNHAEA 476


>gi|152994374|ref|YP_001339209.1| cryptochrome DASH [Marinomonas sp. MWYL1]
 gi|150835298|gb|ABR69274.1| Cryptochrome DASH [Marinomonas sp. MWYL1]
          Length = 441

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 203/438 (46%), Gaps = 38/438 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFI 61
           M + LVW  +DLR  D   L+ A    D  +I ++   P      ++   G+SA +   +
Sbjct: 1   MKLGLVWFGDDLRCADQNMLWRAVQEVD-YLICLYCDEPHNNHPSRYATQGMSANRRRLL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  +   L   G   Q    S+ D +   L+    +  ++ L+ N     +E +   
Sbjct: 60  NQGLQDLALQLQALG---QTLFVSSMDAATS-LNLLLNEIPISHLYRNHHGGWDEQQTLN 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +E R     I      S+  P     + A Q+   ++ FR+ L++NL   D+ + P+PA
Sbjct: 116 RIESRYSDVRIHLDHGLSLFTPSQLPFDIA-QLPDSFSKFRR-LVENL---DVFT-PLPA 169

Query: 182 IRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKV--YYYVEQRDIP 237
           ++   P    +I     +  + I+   MF  GE+ A+  L  +    +  +Y   + ++ 
Sbjct: 170 LQKLPPAPTFDIQCIRPWQLKQIEDNSMFTGGERAAVDQLSDYFSTNLPSHYKETRNELD 229

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS--WLN-ELIWREFYRHL 294
             + +++ SP+L+ G LS RQ      +  +D+  +      S  W+  EL+WRE++   
Sbjct: 230 GWENSTKFSPWLAQGSLSARQI-----KASIDVYERDHGANESTYWIYFELLWREYFH-- 282

Query: 295 MAFYPSVCMGKP-FIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              + + C GK  F+P     +  + S+     + W QG T +P+++A M+QLN  G+M 
Sbjct: 283 ---WYATCYGKQLFLPGGLSGKQTQGSYYAERFRKWSQGNTPYPLVNACMKQLNETGFMS 339

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R I AS L+ +L +DWR G  YF  QL+D  + SN G WQ+ A  G D     R FN
Sbjct: 340 NRGRQIVASCLIYELGIDWRYGAAYFEEQLIDYSVGSNWGNWQYIAGVGADPRG-GRHFN 398

Query: 411 PTIQGKRFDPQGTFIRHW 428
              Q +++DP   FI  W
Sbjct: 399 LQKQTEQYDPNLHFIHKW 416


>gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi]
          Length = 1043

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 135/281 (48%), Gaps = 19/281 (6%)

Query: 206 PMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWN 261
           P++  GE  AL  L +  + K  V  +   +  P     SQ  LSPYL  G LS R  + 
Sbjct: 311 PVWIGGETEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 370

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKD 319
           +L + +    IK      S   +L+WREF+       P+     G P      +I W+++
Sbjct: 371 QLTDLYKK--IKKACPPLSLHGQLLWREFFYCAATKNPTFDKMAGNPICV---QIPWDRN 425

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378
           S  L  W  G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F  
Sbjct: 426 SEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEE 485

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLD D + N G W W  S  +    +F  + P   G++ DP G +IR +LP L N PT+
Sbjct: 486 LLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVKFGRKADPNGDYIRRYLPVLKNFPTR 544

Query: 439 YIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
           +IH P +  +      K  +  +YPLP+V+H  A    + +
Sbjct: 545 FIHEPWNAPENVQRAAKCLIGKDYPLPMVNHAIASRANMER 585


>gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei]
          Length = 606

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 137/504 (27%), Positives = 207/504 (41%), Gaps = 65/504 (12%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M      SVH  W R  LR+ DN +L AA   +   V  V+I  P       +   +  F
Sbjct: 30  MAVDGGSSVH--WFRKGLRLHDNPSLLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 86

Query: 61  IYASLLQVQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINE 116
           +  SL  +  SL +   +  V +      F     EW         VT+L +    E   
Sbjct: 87  LLQSLEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFG 138

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLR 175
             RD  + K  +   +    ++S  L     L+  + +     P      Q ++ + +L 
Sbjct: 139 KERDAAIMKMAKEAGVEVVTENSHTL---YDLDRIIDLNGQKPPLTYKRFQAIISRMELP 195

Query: 176 SLPVPAIRLTGPVTPS-------------NIPRF--FDYPFQAIDP-MFPIGEQNALHIL 219
             PV A+  T     S              +P      +P + + P ++  GE  AL  L
Sbjct: 196 KKPVVAV--TSQQMESCRAEIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARL 253

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            K  + K +  V   + P +   S       LSPYL  G LS R  + RL     DL  K
Sbjct: 254 DKHLERKAW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKK 307

Query: 274 PKSGA---FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
            K  +    S   +L+WREF+       P      G P      +I W+++   L  W +
Sbjct: 308 VKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAE 364

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLAS 387
           G TGFP IDA M QL   GW+H+  R   A F  + DL V W  G   F   LLD D + 
Sbjct: 365 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFPTRGDLWVSWESGVRVFDELLLDADFSV 424

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  
Sbjct: 425 NAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAP 483

Query: 448 D------KNDLSLNYPLPIVDHKK 465
           +      +  + ++YP P+V+H +
Sbjct: 484 ESIQKAARCIIGVDYPRPMVNHAE 507


>gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior]
          Length = 671

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 132/281 (46%), Gaps = 29/281 (10%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSP 256
           + P++  GE  AL  L +  + K +           Q  +P+  G   LSPYL  G LS 
Sbjct: 226 LPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG---LSPYLRFGCLST 282

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKI 314
           R  + +L + +    IK      S   +L+WREF+       P+     G P      +I
Sbjct: 283 RLFYYQLTDLYKK--IKKAVPPLSLHGQLLWREFFYCAATKNPNFDKMQGNPIC---VQI 337

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373
            W+K+   L  W  G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G 
Sbjct: 338 PWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGM 397

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           + F   LLD D + N G W W  S  +    +F  + P   G++ DP G +IR +LP L 
Sbjct: 398 KVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLK 456

Query: 434 NVPTQYIHAP--------HSWLDKNDLSLNYPLPIVDHKKA 466
           N PT+YIH P        H+   K  +   Y LP+V+H K+
Sbjct: 457 NFPTRYIHEPWNAPLSIQHA--AKCIIGKEYSLPMVNHNKS 495


>gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens]
          Length = 574

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 132/279 (47%), Gaps = 25/279 (8%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSP 256
           + P++  GE  AL  L +  + K +           Q  +P+  G   LSPYL  G LS 
Sbjct: 224 LPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG---LSPYLRFGCLST 280

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKI 314
           R  + +L + +    IK      S   +L+WREF+       P+     G P      +I
Sbjct: 281 RLFYYQLTDLYKK--IKKAVPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPIC---VQI 335

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373
            W+K+   L  W  G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G 
Sbjct: 336 PWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGM 395

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           + F   LLD D + N G W W  S  +    +F  + P   G++ DP G +IR +LP L 
Sbjct: 396 KVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPILK 454

Query: 434 NVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466
           N PT+YIH P +         K  +  +Y LP+V+H K+
Sbjct: 455 NFPTRYIHEPWNAPLSVQRAAKCIIGKDYSLPMVNHSKS 493


>gi|88807683|ref|ZP_01123195.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
 gi|88788897|gb|EAR20052.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
          Length = 493

 Score =  127 bits (320), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 207/484 (42%), Gaps = 48/484 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + LVW + DLR+ D++ L  A   +   V+ ++I  PE W Q   SARQ  F   SL  
Sbjct: 4   GLQLVWFKRDLRLVDHQPLARAL--ARGPVLPLYIVEPELWSQPDCSARQWAFCRESLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKR 126
           +Q++ ++ G            D+++ L+    Q  ++ L+ + +        RD+ +   
Sbjct: 62  LQEAFAEVGQPLIIRS----GDAVDVLERARRQLGISALWSHEETGNAWTFARDRRVAAW 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + R I         LP   ++   LQ  + +    +   + + +A +   P     L+G
Sbjct: 118 ARERGIPWH-----ELPQFGVVRR-LQTRRGWA---RRWEERMGEA-ITPAPTGLTPLSG 167

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240
            + P ++P       QA DP  P     G +  L  L  F   +V  Y      P  A +
Sbjct: 168 -IAPGDLPTNDALALQA-DPC-PYRQRGGRRLGLQELNDFLAHRVQGYCRSISSPNLAFK 224

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S+LS Y++ G LS R+   R +E           G  S+ + L W   +   +   P 
Sbjct: 225 GCSRLSAYITWGCLSMREVLQRSRE-------FQGRGVSSFSSRLHWHCHFIQKLEDQPP 277

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +   + F P+   I  + D     AW +G TG P +DA MR L   GW++ R+R +  SF
Sbjct: 278 I-EWEDFHPFMRGIR-SLDDARFAAWAEGQTGVPFVDACMRALRAHGWINFRMRAMLMSF 335

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS---TGNDSVPYFRIFNPTIQGKR 417
              +L + WR    +   Q +D        G  W+     +G+ S+   RI+NP  QG  
Sbjct: 336 ASYNLWLPWRDTGLHLARQFVD-----YEPGIHWSQCQMQSGSTSINTIRIYNPIKQGHD 390

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            DP G FIR W PEL +VP  ++H P S      L     +PIVD   +      + +  
Sbjct: 391 HDPDGAFIRRWCPELEDVPAVHLHEPWSL-----LGAPRSMPIVDCAISAREAKERIFEI 445

Query: 478 KKQS 481
           ++ +
Sbjct: 446 RRSA 449


>gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii]
          Length = 623

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 133/496 (26%), Positives = 206/496 (41%), Gaps = 56/496 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ V W R  LR+ DN +L  +   +   V  V+I  P       +   +  F+   L
Sbjct: 1   MVVNTVHWFRKGLRLHDNPSLRDSIQGAHT-VRCVYILDPWFAGSSNVGISRWRFLLQCL 59

Query: 66  LQVQKSL---SQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL   + +  V +      F     EW         +T+L Y    E     RD 
Sbjct: 60  EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEW--------NITRLSYEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K      +      S  L     L+  +++    +P      Q L+ + + ++  PA
Sbjct: 112 AIKKLANEAGVEVIVRISHTL---YDLDKIIELNGGQSPLTYKRFQTLI-SRMEAVETPA 167

Query: 182 IRLTGPV-----TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             +T  V     TP +        +P   +  F        ++P GE  AL  L +  + 
Sbjct: 168 ETITAEVMGTCTTPVSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLER 227

Query: 226 KVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           K +  V   + P +   S       LSPYL  G LS +  + +L + +  +  K  S   
Sbjct: 228 KAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCQLFYFKLTDLYRKVK-KNSSPPL 284

Query: 280 SWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
           S   +L+WREF+       P      G P      +I W+K+   L  W +G TGFP ID
Sbjct: 285 SLYGQLLWREFFYTTATNNPRFDKMEGNPIC---VQIPWDKNPEALAKWAEGRTGFPWID 341

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  
Sbjct: 342 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-L 400

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KN 450
           S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K 
Sbjct: 401 SCSSFFQQFFHCYCPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWTAPESVQKAAKC 460

Query: 451 DLSLNYPLPIVDHKKA 466
            + ++YP P+V H +A
Sbjct: 461 IIGVHYPKPMVHHAEA 476


>gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator]
          Length = 558

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 132/281 (46%), Gaps = 29/281 (10%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYY-------YVEQRDIPAIQGTSQLSPYLSIGVLSP 256
           + P++  GE  AL  L +  + K +           Q  +P+  G   LSPYL  G LS 
Sbjct: 257 LPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG---LSPYLRFGCLST 313

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKI 314
           R  + +L + +    IK      S   +L+WREF+       P+     G P      +I
Sbjct: 314 RLFYYQLTDLYKK--IKKAMPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPIC---VQI 368

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373
            W+K+   L  W  G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G 
Sbjct: 369 PWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGM 428

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           + F   LLD D + N G W W  S  +    +F  + P   G++ DP G +IR +LP L 
Sbjct: 429 KVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVRFGRKADPNGDYIRRYLPVLK 487

Query: 434 NVPTQYIHAP--------HSWLDKNDLSLNYPLPIVDHKKA 466
           N PT+YIH P        H+   K  +   Y LP+V+H K+
Sbjct: 488 NFPTRYIHEPWNAPLSIQHA--AKCIVGKEYSLPMVNHSKS 526


>gi|149725124|ref|XP_001490350.1| PREDICTED: similar to Cryptochrome-2 [Equus caballus]
          Length = 579

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 137/296 (46%), Gaps = 29/296 (9%)

Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249
             +P + + P ++  GE  AL  L K  + K +  V   + P +   S       LSPYL
Sbjct: 208 LGFPTEGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMNAASLLASPTGLSPYL 265

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304
             G LS R  + RL     DL  K K  +    S   +L+WREF+       P      G
Sbjct: 266 RFGCLSCRLFYYRL----WDLYRKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEG 321

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
            P      +I W+++   L  W +  TGFP IDA M QL   GW+H+  R   A FL + 
Sbjct: 322 NPIC---IQIPWDRNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 378

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL V W  G   F   LLD D + N G W W + +      +F  + P   G+R DP G 
Sbjct: 379 DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGD 437

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
           +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +     + +
Sbjct: 438 YIRRYLPKLKAFPSRYIYEPWNAPEAVQKAAKCIIGVDYPRPIVNHAETSRLNIER 493


>gi|302745160|gb|ADL62683.1| cryptochrome 3 [Phreatichthys andruzzii]
          Length = 475

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 130/270 (48%), Gaps = 19/270 (7%)

Query: 211 GEQNALHILRKFCKEK--VYYYVEQRDIPA---IQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           GE  A+  L K    K  V  +   R I A       + LSPYL  G LS R  +  L+E
Sbjct: 191 GETEAMERLNKHLDRKGWVANFERPRIITAQSLFASPTGLSPYLRFGCLSCRVFYYNLRE 250

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLL 323
            F+ L  +  S   S   +L+WREF+       P+     G P      +I W+ +   L
Sbjct: 251 LFMKLR-RRSSPPLSLFGQLLWREFFYTAGTNNPNFDRMEGNPIC---VQIPWDHNPEAL 306

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382
             W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD
Sbjct: 307 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLLD 366

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH- 441
            D + N G W W + +      +F  + P   G+R DP G +IR ++P+L + P  YI+ 
Sbjct: 367 ADWSVNAGSWMWLSCSAFFQ-QFFHCYCPVGFGRRTDPSGDYIRRYIPKLKDYPNCYIYE 425

Query: 442 ---APHSWLDKND--LSLNYPLPIVDHKKA 466
              AP S     +  + ++YP P+++H ++
Sbjct: 426 PWNAPESVQKAANCIVGVDYPKPMINHAES 455


>gi|313200806|ref|YP_004039464.1| cryptochrome, dash family [Methylovorus sp. MP688]
 gi|312440122|gb|ADQ84228.1| cryptochrome, DASH family [Methylovorus sp. MP688]
          Length = 467

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 144/301 (47%), Gaps = 42/301 (13%)

Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPV--------TPSNIPRFFDYPFQAIDP-- 206
            +T FR AL +  VQA   + P+P+I+   P+         PS +         A +P  
Sbjct: 176 TFTTFRHALERGHVQA---ARPLPSIKQLPPLPSHALLNAIPSEVASDGTDHAMASEPWP 232

Query: 207 -----MFPIG-------EQNALHILRKFCKEKV--YYYVEQRDIPAIQGTSQLSPYLSIG 252
                 FP+G       EQ AL  L+++C+ ++   Y   +  +  +  +S+ SP+L+ G
Sbjct: 233 DDARSAFPLGSSGFDGSEQAALQHLQQYCQRRLPHSYKSTRNGLIGVDYSSKWSPWLATG 292

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR-----HLMAFYPSVCMGKPF 307
            LS RQ W  + + F       +S  + W  EL+WR+ +R     H    Y +  +G+  
Sbjct: 293 ALSARQAWAAI-QAFEAEHGANESTYWLWF-ELLWRDHFRWLHFKHGNRLYRARGLGEAP 350

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
           +P       + D      W +G TG P IDA MR+L   G++ NR+R   AS+L+ DL  
Sbjct: 351 VP-------SHDPDHFARWCRGETGQPFIDAGMRELAATGYLSNRMRQNVASYLIHDLGC 403

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR G  +F SQLLD D+ SN G W + +  G D     R FNP  Q + +D  G++   
Sbjct: 404 DWRAGAAWFESQLLDYDVYSNQGNWLYLSGRGTDPR-QGRRFNPDKQAQDYDADGSYRAL 462

Query: 428 W 428
           W
Sbjct: 463 W 463


>gi|302745154|gb|ADL62680.1| criptochrome 1b [Phreatichthys andruzzii]
          Length = 564

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 134/276 (48%), Gaps = 24/276 (8%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS R  +
Sbjct: 166 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 223

Query: 261 NRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
            +L     DL  K K  +    S   +L+WREF+       P     + F P   +I W+
Sbjct: 224 FKL----TDLYRKVKKNSLPPLSLYGQLLWREFFYTAATNNPHFDKME-FNPICVQIPWD 278

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYF 376
           ++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F
Sbjct: 279 RNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVF 338

Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436
              LLD D + N G W W  S  +    +F  + P   G+R DP G +IR +LP L   P
Sbjct: 339 EELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFP 397

Query: 437 TQYIH----APHSW--LDKNDLSLNYPLPIVDHKKA 466
            ++I+    AP S   + K  + ++YP P+V+H +A
Sbjct: 398 AKFIYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 433


>gi|260778085|ref|ZP_05886978.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260606098|gb|EEX32383.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 440

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 203/458 (44%), Gaps = 62/458 (13%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFI-- 61
           V L W   DLRI DN  L+ A    D+ +    +   +++     ++  + + +  F+  
Sbjct: 5   VGLYWFTCDLRIQDNPLLWQASCEVDSLLCVYCLPQMDRYLVRYSQEQSLGSERLAFLQQ 64

Query: 62  -YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR- 119
             A L Q  +++ QK +VF        D  ++ L+ +     VT  + +    +NE    
Sbjct: 65  SVACLSQSLENMGQKLLVFD-------DRPLDVLNRFIQDYGVTHFYCDLFSGVNEQSVV 117

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL---VQADLRS 176
           D+L   +L   + C     + L     +     ++   +T FRK  +++L   V + L +
Sbjct: 118 DRL--SQLHSDLTCIQEPVNTLFSQRLLPFTLGELPSTFTQFRKQ-VEHLPIGVDSSLSA 174

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQR- 234
           LP P  ++   +    +             +F  GE   L H    F      +Y + R 
Sbjct: 175 LPEPPAQVISTLNMEEVSC----------QLFAGGETLGLAHCSGYFATSLASHYKQTRN 224

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELIWREF 290
           ++     +++ SP+L++G LSP++ +  L+E       + + GA     W+  EL+WRE+
Sbjct: 225 ELDGFDFSTKFSPWLAVGCLSPKRIFVLLQE------YEQREGANDSTYWIFFELLWREY 278

Query: 291 Y--------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           +        R L  F       K   P T        S+  Q WK G T +PI++A M Q
Sbjct: 279 FHWYGKLWGRRLFKFSGL----KDATPLTSFY-----SYRFQQWKHGETQYPIVNACMNQ 329

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G+M NR R + AS L+ +L +DWR G  YF +QL+D D+ASN G WQ+ A  G D 
Sbjct: 330 LKATGYMSNRGRQLVASCLIHELGLDWRYGAAYFETQLVDYDVASNWGNWQYLAGVGADP 389

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
               R FN   Q + +DP   FI  W      +P+ ++
Sbjct: 390 RDS-RRFNLAKQTEMYDPDKVFIERWHGNKVIIPSDHV 426


>gi|160334828|gb|ABX24822.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334846|gb|ABX24831.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334856|gb|ABX24836.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334862|gb|ABX24839.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334910|gb|ABX24863.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334912|gb|ABX24864.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334914|gb|ABX24865.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334916|gb|ABX24866.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334920|gb|ABX24868.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765937|gb|ACX49999.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765939|gb|ACX50000.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 155

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 96/152 (63%), Gaps = 8/152 (5%)

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
            + W+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD
Sbjct: 3   FKGWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH- 441
            DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH 
Sbjct: 63  ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122

Query: 442 ---APHSWLDKNDLSL--NYPLPIV--DHKKA 466
              AP S L    + L  NYP PIV  D  KA
Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVGLDEAKA 154


>gi|229529162|ref|ZP_04418552.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae 12129(1)]
 gi|229332936|gb|EEN98422.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae 12129(1)]
          Length = 461

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 182/439 (41%), Gaps = 45/439 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G                W+      Q +  L    Q EI ++  D 
Sbjct: 63  NQTLADLDHSLSTLGQKL-------------WVTPLLPYQALRHLL--TQVEITDIYVDA 107

Query: 122 LLEK-------RLQHRVICKSFDDSVL--LPPGSILNHALQ-MYKVYTPFRKALIQNLVQ 171
           +          R+     C       L  L     L  AL+ +   +T FRK      V+
Sbjct: 108 MAGSDERQAIARIHQDFSCVHIHQQALHSLLSEPQLPFALEALPSTFTQFRKQ-----VE 162

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYY 230
               S P+   R+  P+         D   +     F  GEQ  L H    F       Y
Sbjct: 163 TLSLSAPMGYPRVLPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSMLPSCY 222

Query: 231 VEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            E R+ +  +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE
Sbjct: 223 KETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWRE 280

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           ++      Y +       I   + +        LQ WK G T FPI++A MRQLN  G+M
Sbjct: 281 YFYWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGVTPFPIVNACMRQLNQTGYM 339

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            NR R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R F
Sbjct: 340 SNRGRQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGS-RRF 398

Query: 410 NPTIQGKRFDPQGTFIRHW 428
           N   Q   +DP+G F+  W
Sbjct: 399 NLEKQAHTYDPEGEFVAKW 417


>gi|19772572|gb|AAL46564.1| cryptochrome 2 [Gallus gallus]
          Length = 531

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 135/286 (47%), Gaps = 23/286 (8%)

Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249
             +P   + P ++  GE  AL  L K  + K +  V   + P +   S       LSPYL
Sbjct: 156 LGFPTDGLAPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 213

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPF 307
             G LS R  + RL E +  +  +  +   S   +L+WREF+       P      G P 
Sbjct: 214 RFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPI 272

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366
                +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL 
Sbjct: 273 CI---QIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 329

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + W  G   F   LLD D + N G W W + +      +F  + P   G+R DP G +++
Sbjct: 330 ISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVK 388

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
            +LP+L   P++YI+ P +  +      K  + ++YP P+V+H + 
Sbjct: 389 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 434


>gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex]
          Length = 553

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 129/487 (26%), Positives = 197/487 (40%), Gaps = 58/487 (11%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ--- 69
           W R  LR+ DN +L        +    +FI  P       +   +  F+  SL  +    
Sbjct: 16  WFRKGLRLHDNPSLKDGLKGC-STYRCIFILDPWFAGSSNVDINKWRFLLESLEDLDQNL 74

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L+ +  V +           +  ++ CL       F         VR   ++      
Sbjct: 75  RKLNSRLFVIRGQPAGVLPKLFKEWETTCL------TFEEDPEPFGRVRDQNII------ 122

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKV---YTPFRKALIQNLVQADLRSLPVPAIRLT- 185
             +CK F+  V+      L H  ++ +      P      QN++ A + + P P   +T 
Sbjct: 123 -TMCKDFNIEVITRASHTLYHPQKIIEKNGGKAPLTYRQFQNII-ASVDAPPPPESDITF 180

Query: 186 -------GPVTPS-----NIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEK--V 227
                   P+  S     ++P   +  F   D + P     GE  AL  L +  + K  V
Sbjct: 181 ESIGRGYTPMDESMDDRFSVPTLEELGFDT-DGLMPAVWHGGETEALTRLERHLERKAWV 239

Query: 228 YYYVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
             +   +  P     SQ  LSPYL  G LS R    +L   +    IK      S   ++
Sbjct: 240 ASFGRPKMTPQSLLASQTGLSPYLRFGCLSVRLFHQQLTNLYKK--IKKAQPPLSLHGQV 297

Query: 286 IWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +WREF+       P+    +G P      +I W+ ++  L  W  G TGFP IDA M QL
Sbjct: 298 LWREFFYCAATNNPNFDKMIGNPIC---VQIPWDSNAEALAKWANGQTGFPWIDAIMTQL 354

Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
              GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +  
Sbjct: 355 REEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGTWMW-LSCSSFF 413

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNY 456
             +F  + P   G++ DP G FI+ + P L N P QYIH P +  +      K  +  +Y
Sbjct: 414 HQFFHCYCPVRFGRKVDPNGDFIKKYQPVLKNFPLQYIHEPWNAPESVQRAAKCVIGKDY 473

Query: 457 PLPIVDH 463
           PLP+V+H
Sbjct: 474 PLPMVNH 480


>gi|302745156|gb|ADL62681.1| criptochrome 2a [Phreatichthys andruzzii]
          Length = 488

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 131/275 (47%), Gaps = 22/275 (8%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  + +  + K +  V   + P +   S       LSPYL  G LS R  +
Sbjct: 61  VWPGGETEALTRIERHLERKAW--VANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 118

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318
            +L + +  +  K  +   S   +L+WREF+       P      G P      +I W+K
Sbjct: 119 FKLTDLYRKV-KKTNTPPLSLYGQLLWREFFYTAATSNPRFDKMEGNPIC---VRIPWDK 174

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +   L  W +  TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F 
Sbjct: 175 NPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 234

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD D + N G W W  S  +    +F  + P   G+R DP G FIR +LP L   P 
Sbjct: 235 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPA 293

Query: 438 QYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
           +YI+ P +  D      K  + ++YP P+V+H +A
Sbjct: 294 KYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNHAEA 328


>gi|330448317|ref|ZP_08311965.1| DNA photolyase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492508|dbj|GAA06462.1| DNA photolyase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 491

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 208/478 (43%), Gaps = 45/478 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++VWL+ DLR++D++AL  A  NSD  V+ ++I  P        S R   FI+ SL  +
Sbjct: 4   VNVVWLKRDLRLSDHQALSVAA-NSDLPVMLIYIMEPMLLSDPHYSERHWRFIWQSLQDI 62

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
              L+     VF +H      +++E LD       +  LF ++     E+      E+ L
Sbjct: 63  NHQLAGVNSQVFIFH-----GNAVECLDKLMHHFPINALFSHQ-----EIGLGCTFERDL 112

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             +  C K          G+++  A    K  T + K     +++A L S+ +  +    
Sbjct: 113 NIKAWCDKQQIQWHEFQQGAVIRGA----KNRTNWDKHW-NRVMRAPLYSVNLDKVNWVS 167

Query: 187 PVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            ++P  +      P     + +  M   G   AL  L  F   +   Y      P    T
Sbjct: 168 -ISPDQLADMLFSPPKSWCERVQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTASRT 226

Query: 243 --SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LSPYL+ G +S RQ + ++   +     +    A S  + L W   +       P 
Sbjct: 227 ACSRLSPYLAWGNISLRQVYQQVLAHWNVKGFRRSLIALS--SRLHWHCHFIQKFESEPD 284

Query: 301 V---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +   CM + +     +   +KD   L AWK+G TG P+IDA MR L   G+++ R+R + 
Sbjct: 285 IEFFCMNRTYDRLLTQY-CSKDELKLNAWKEGNTGIPLIDACMRCLYHTGYINFRMRSML 343

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFL   L +DWR G  +     LD +   +   +Q  A  G   +   RI+NPT Q + 
Sbjct: 344 VSFLTHHLNIDWRDGVTHLAQLFLDFEPGIHYSQFQMQA--GVTGINTIRIYNPTKQAQE 401

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW---------LDKNDLSLNYPLPIVDHKKA 466
            DP G FI  W+PEL NVP   +  P +          LD N   L+   PIVD +++
Sbjct: 402 HDPDGKFIHKWVPELANVPAPLLFEPWTLTELKIVMYQLDNNSCYLS---PIVDLERS 456


>gi|156546843|ref|XP_001606405.1| PREDICTED: similar to cryptochrome 2 [Nasonia vitripennis]
          Length = 648

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 133/294 (45%), Gaps = 28/294 (9%)

Query: 192 NIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYY-------YVEQRDIPAIQG 241
            +P   +  F     M P+   GE  AL  L +  + K +           Q  +P+  G
Sbjct: 272 GVPTLEELGFDTEGLMAPVWVGGETEALARLERHLERKAWVASFGRPKMTPQSLLPSQTG 331

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
              LSPYL  G LS R  + +L + +    IK      S   +L+WREF+       P+ 
Sbjct: 332 ---LSPYLRFGCLSTRLFYYQLADLYKK--IKKTIPPLSLHGQLLWREFFYCAATNNPNF 386

Query: 302 --CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               G P      +I W+K+   L  W  G TGFP IDA M QL   GW+H   R   A 
Sbjct: 387 DRMHGNPIC---VQIPWDKNVVALSKWANGQTGFPWIDAIMTQLREEGWIHQLARHAVAC 443

Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P   G++ 
Sbjct: 444 FLTRGDLWISWEEGMKVFDELLLDADWSINAGMWMW-LSCSSFFQQFFHCYCPVRFGRKA 502

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466
           DP G +IR +LP L N PT+YIH P +         K  +   Y LP+V+H K+
Sbjct: 503 DPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSVQRAAKCIIGQEYALPMVNHSKS 556


>gi|327484373|gb|AEA78780.1| Deoxyribodipyrimidine photolyase, single-strand- specific [Vibrio
           cholerae LMA3894-4]
          Length = 462

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 187/430 (43%), Gaps = 26/430 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G          +    + L     Q  +T ++ +     +E +   
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQAIA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180
            + +      I +    S+L  P   L  AL+ +   +T FRK  ++ L    L S P+ 
Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-VETL---SLSSAPIG 172

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
             R+  P+         D   +     F  GEQ  L H    F       Y E R+ +  
Sbjct: 173 YPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLDG 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      Y
Sbjct: 233 MDYSTKFSPWLALGAVSPKTIYAILQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 290

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR R + A
Sbjct: 291 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKLGDTPFPIVNACMRQLNQTGYMSNRGRQLVA 349

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   +
Sbjct: 350 SCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 408

Query: 419 DPQGTFIRHW 428
           DP+G F+  W
Sbjct: 409 DPKGEFVAKW 418


>gi|311696907|gb|ADP99780.1| deoxyribodipyrimidine photolyase [marine bacterium HP15]
          Length = 440

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 195/432 (45%), Gaps = 29/432 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHFIYAS 64
           L W   DLR+ DN +L AA  +    ++ +++  P +W   G      +   +  F++ S
Sbjct: 4   LYWFTRDLRLHDNASLLAASKSD--MLLCLYVVDP-RWFAPGPLQSKAMGDHRWRFLWQS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L+ +++SL   G          F +    +        + ++  +R     E  + + ++
Sbjct: 61  LMALERSLRPLGQRLHI----AFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIK 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            RL  + + + F+   L   GS+     ++   ++ FRK + +     D  S  +    L
Sbjct: 117 DRLP-KAVFQQFETLSLFTEGSLPMALEELPDTFSQFRKQVEKT---GDRCSERLRIRTL 172

Query: 185 TGPVTPSNIPRFFDYPFQAI-DPMFPI----GEQNALHILRKFC--KEKVYYYVEQRD-I 236
           T    P   P         I +P+ P+    GE   L  L++F      +  Y E R+ +
Sbjct: 173 TALPPPPGFPEDNRGDCPPIPEPVHPLQFMGGEAAGLARLQEFLYGNHSIDRYKETRNAL 232

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +S+ SP+L+ G LS R+    + E +     K +S  + W  EL+WRE++ +  A
Sbjct: 233 DTWDASSKFSPWLANGCLSVREVAETITE-YEASETKNESTYWLWF-ELLWREYF-YWYA 289

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                 + +      ++       H  +AW QG T +PI++AAM QL   G+M NR R +
Sbjct: 290 LKHGANLFRRDGVQRKRRHGTFYGHRFKAWCQGNTEYPIVNAAMNQLRETGYMSNRARQL 349

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS  + +L +DWR G  +F  QL+D D+ SN G WQ+ A  G D     R FN   Q +
Sbjct: 350 VASCFINELGLDWRYGAAWFEEQLIDYDVGSNYGNWQYLAGVGADPRG-LRQFNLEKQTQ 408

Query: 417 RFDPQGTFIRHW 428
           ++DP GTFI  W
Sbjct: 409 QYDPTGTFIDRW 420


>gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei]
          Length = 591

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 136/498 (27%), Positives = 206/498 (41%), Gaps = 65/498 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SVH  W R  LR+ DN +L AA   +   V  V+I  P       +   +  F+  SL  
Sbjct: 22  SVH--WFRKGLRLHDNPSLLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLED 78

Query: 68  VQKSLSQ---KGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +  SL +   +  V +      F     EW         VT+L +    E     RD  +
Sbjct: 79  LDTSLRKLNSRLFVVRGQPADVFPRLFKEW--------GVTRLTFEYDSEPFGKERDAAI 130

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182
            K  +   +    ++S  L     L+  + +     P      Q ++ + +L   PV A+
Sbjct: 131 MKMAKEAGVEVVTENSHTL---YDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAV 187

Query: 183 RLTGPVTPS-------------NIPRF--FDYPFQAIDP-MFPIGEQNALHILRKFCKEK 226
             T     S              +P      +P + + P ++  GE  AL  L K  + K
Sbjct: 188 --TSQQMESCRAEIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERK 245

Query: 227 VYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-- 278
            +  V   + P +   S       LSPYL  G LS R  + RL     DL  K K  +  
Sbjct: 246 AW--VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKVKRNSTP 299

Query: 279 -FSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
             S   +L+WREF+       P      G P      +I W+++   L  W +G TGFP 
Sbjct: 300 PLSLFGQLLWREFFYTAATNNPRFDRMEGNPIC---IQIPWDRNPEALAKWAEGKTGFPW 356

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A F  + DL V W  G   F   LLD D + N G W W
Sbjct: 357 IDAIMTQLRQEGWIHHLARHAVACFPTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 416

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
            + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      
Sbjct: 417 LSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAA 475

Query: 449 KNDLSLNYPLPIVDHKKA 466
           +  + ++YP P+V+H + 
Sbjct: 476 RCIIGVDYPRPMVNHAET 493


>gi|260765945|gb|ACX50003.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 155

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/152 (46%), Positives = 96/152 (63%), Gaps = 8/152 (5%)

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
            + W+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD
Sbjct: 3   FKXWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD 62

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH- 441
            DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH 
Sbjct: 63  ADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHH 122

Query: 442 ---APHSWLDKNDLSL--NYPLPIV--DHKKA 466
              AP S L    + L  NYP PIV  D  KA
Sbjct: 123 PWNAPESVLQAAGIELGSNYPRPIVGLDEAKA 154


>gi|307944813|ref|ZP_07660151.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4]
 gi|307772027|gb|EFO31250.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4]
          Length = 527

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 129/514 (25%), Positives = 197/514 (38%), Gaps = 93/514 (18%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V +VW + DLR  D+  L  A       V+ +++  P+ W Q  +S R   F+  SL+ +
Sbjct: 11  VQIVWFKKDLRTYDHAPLLKAAQA--GPVLPLYVIEPKLWMQPDMSGRHFAFLKESLVDL 68

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLD---------------------SYCLQQRVTKLF 107
           +  L   G+          DD I  L                      ++   +RV+   
Sbjct: 69  RDDLQGLGVRL----VLKVDDIIHVLTDLKSRHAIAALWSHEETGNGWTFARDKRVSAWC 124

Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
                  +E+R+  ++ +RL+ R       D+V+  P  I +    +  V  P      Q
Sbjct: 125 RASGVHWHELRQTGVV-RRLKGRTGWARQWDTVMGDP--IAHRPQNIAAVLEPSDPFPSQ 181

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KE 225
           +  +  L   P P  R TG                        G Q AL  L  F   + 
Sbjct: 182 H--ELGLNPDPCP-YRQTG------------------------GRQAALATLDSFLTRRG 214

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-- 283
           + Y       + A    S+LSP+++ G LS R+      +    L   P  G  SW +  
Sbjct: 215 RPYQCAMSSPVTAFDACSRLSPHIAFGTLSLREITQATYDRQRHLKTNPLPGDRSWRSAM 274

Query: 284 -----ELIWREFYRHLMAFYPSVCMG---------KPFIPWTEKIEWNKDSHLLQAWKQG 329
                 L W   +   +   P +            +P +P         D  L QAWK G
Sbjct: 275 RSFSGRLHWHCHFMQKLEDEPRLEFENLHQAYDGLRPSVP---------DETLFQAWKAG 325

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG P +DA MR L+  GWM+ R+R +  +     L +DWR    +      D +   + 
Sbjct: 326 ETGLPFVDACMRALSATGWMNFRMRAMLVAVSSYHLWLDWREPGLHLARLFTDYEPGIH- 384

Query: 390 GGW-QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
             W Q    +G   +   RI+NP  QG   DP G F+R W+PEL ++  Q+IH P  W  
Sbjct: 385 --WPQVQMQSGTTGINTVRIYNPVKQGLDQDPDGVFVRRWVPELADIDAQHIHEP--WKA 440

Query: 449 KND---LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            N    L   YP P+VDH  A      + +A +K
Sbjct: 441 DNAGRVLGKRYPFPVVDHLSAAKEAREKVWAIRK 474


>gi|254224954|ref|ZP_04918569.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51]
 gi|125622642|gb|EAZ50961.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51]
          Length = 461

 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 185/430 (43%), Gaps = 27/430 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G          +    + L     Q  +T ++ +     +E +   
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQAIA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180
            + +      I +    S+L  P   L  AL+ +   +T FRK      V+    S P+ 
Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
             R+  P+         D   +     F  GEQ  L H    F       Y E R+ +  
Sbjct: 172 YPRVLPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQHYFSSMLPSCYKETRNGLDG 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      Y
Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR R + A
Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   +
Sbjct: 349 SCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGS-RQFNLAKQAHTY 407

Query: 419 DPQGTFIRHW 428
           DP+G F+  W
Sbjct: 408 DPKGEFVAKW 417


>gi|254431842|ref|ZP_05045545.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
 gi|197626295|gb|EDY38854.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
          Length = 554

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 195/459 (42%), Gaps = 65/459 (14%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M + +VW R DLR+ D+ AL+ A   S+  V+ +FI  P   +       +   +  +L 
Sbjct: 1   MRLQVVWFRRDLRLGDHPALHQAA--SEGAVLPLFILDPALLQHPETGVARVGVLLDNLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L Q                + W +       V K  Y     +  V  ++++ + 
Sbjct: 59  ALDHELKQLASRLL----------VRWGEPAACLLSVVKA-YRADAVLAHVDSERIVGRV 107

Query: 127 LQHRVICKSFDDSVLL----PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
              RV  +     V L    PPG +    L  Y  Y  F   ++          LP P  
Sbjct: 108 RDARVQGQLQQAGVPLRWIEPPGGL--EELVPYPAYRRFWHGVMAA------EPLPAPGR 159

Query: 183 RLT-----GPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKV---YYYV 231
            LT     G  T + +P         +D   P  P G   AL  L+ FC+++V   YY+ 
Sbjct: 160 LLTPPPAAGESTAAAVPSL--EALGMVDDGKPRPPGGSAAALQRLQAFCRQEVSSRYYW- 216

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG-AFSW---LNELIW 287
            Q   PA + +S +SPYL  GVLS RQC   +       L +  +G   SW   ++ L W
Sbjct: 217 -QLSYPAARASSGISPYLKFGVLSHRQCLRAIAP-----LRRGDAGRQRSWRQLVSRLRW 270

Query: 288 REFYRHLMAFYPSVCMGKPFIPW----TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR-Q 342
                    + P + + +P   W     + +  +    +   W++G TGFPI+DA  R  
Sbjct: 271 GAGMAQRFRYLPQLEL-EPL--WRCHRDDAVLRDTQEEMYLRWQEGRTGFPIVDAVSRCL 327

Query: 343 LNTIGW--MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG- 399
           L T GW  ++ R R I ASFL     +DWR G  ++M  LLDGD   ++  +QWA   G 
Sbjct: 328 LATGGWRDLNFRSRAIHASFLTNLCGIDWRYGALHYMRHLLDGDCPIDH--YQWAMQAGV 385

Query: 400 --NDSVPYFRIFNPT-IQGKRFDPQGTFIRHWLPELNNV 435
               +  + RI++P  +   R DP G FIR WLPEL  +
Sbjct: 386 TAGGTGAWTRIYHPGQVAVNRCDPHGVFIRRWLPELAEL 424


>gi|326920457|ref|XP_003206489.1| PREDICTED: cryptochrome-2 [Meleagris gallopavo]
          Length = 540

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 135/286 (47%), Gaps = 23/286 (8%)

Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249
             +P   + P ++  GE  AL  L K  + K +  V   + P +   S       LSPYL
Sbjct: 165 LGFPTDGLAPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 222

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPF 307
             G LS R  + RL E +  +  +  +   S   +L+WREF+       P      G P 
Sbjct: 223 RFGCLSCRLFYYRLWELYKKV-KRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPI 281

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366
                +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL 
Sbjct: 282 ---CIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 338

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + W  G   F   LLD D + N G W W + +      +F  + P   G+R DP G +++
Sbjct: 339 ISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVK 397

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
            +LP+L   P++YI+ P +  +      K  + ++YP P+V+H + 
Sbjct: 398 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 443


>gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio]
 gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio]
          Length = 638

 Score =  126 bits (316), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 213/503 (42%), Gaps = 68/503 (13%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MSV+ V W R  LR+ DN AL  A + +D  +  V+   P       +   +  F+  SL
Sbjct: 1   MSVNSVHWFRKGLRLHDNPALLEALNGADT-LRCVYFLDPWFAGASNLGVNRWRFLLQSL 59

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL +      V +      F     EW        +V++L +    E     RD 
Sbjct: 60  EDLDASLRKLNSCLFVIRGQPADIFPRLFKEW--------KVSRLTFEFDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSI--LNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            ++K     + C++  + ++    ++  L+  +++    +P      Q LV     S+  
Sbjct: 112 AIKK-----LACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVS----SMEP 162

Query: 180 PAIRLTGP--------VTP--------SNIPRFFDYPF--QAIDP-MFPIGEQNALHILR 220
           P   L  P        VTP          +P   +  F  + + P ++P GE  AL  + 
Sbjct: 163 PDPPLASPDRGMMGKCVTPISENHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALKRME 222

Query: 221 KFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPR--QCWNRLKEEFVDLLI 272
           +        + E  + P +  +        LSPYL  G LS R   C +    + V   +
Sbjct: 223 RHLGPDSTAWQENFERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCNSLSSTKKVKKNM 282

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
            P   + S  ++++WREF+       P      G P      +I W++++  L  W +  
Sbjct: 283 NP---SISLYDKILWREFFYTAATNNPRFDRMEGNPIC---IRIPWDRNAEALAKWAEAK 336

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389
           TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N 
Sbjct: 337 TGFPWIDAIMMQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNA 396

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHS 445
           G W    S  +    +F  + P   G+R DP G FIR +LP L + P +YI+    APH 
Sbjct: 397 GSW-LCHSCSSFFQQFFHCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHD 455

Query: 446 --WLDKNDLSLNYPLPIVDHKKA 466
                K  + ++YP P+V+H +A
Sbjct: 456 VQLAAKCAIGVDYPKPMVNHAEA 478


>gi|83816774|ref|YP_446431.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM
           13855]
 gi|83758168|gb|ABC46281.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM
           13855]
          Length = 537

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 211/493 (42%), Gaps = 43/493 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW + DLR+ D++ L  A       V+ +++A P          R    I  +L+++
Sbjct: 49  TQIVWYKRDLRVGDHRPLAEAADR--GPVLPLYVAEPSIAAGADYHPRHWTLIREALIEL 106

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKLLEK 125
           +  L+++G      +C    + +E L +     R+    +    R +E ++  RD     
Sbjct: 107 RARLAKRGQPLVV-RCGEMPEVLESLRATAGPLRLWAHEETGNQRTHERDQRVRDW---A 162

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           R       +     V+  P      A Q       +  ++ + LV       P  A++  
Sbjct: 163 RAHEVPFTEVPSRGVVRGPHDRDEWADQ-------WEASMDRPLVH------PPDALQPV 209

Query: 186 GPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGT 242
             V P  +P   D   + +   +  IGE  A   L  F +E+   Y     R  PA    
Sbjct: 210 DSVAPGPMPSHADLGLRPSTAALQQIGEAEAHRTLDSFLRERGRSYRRAMSRPGPAQTEC 269

Query: 243 SQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGA-----FSWLNELIWREFYRHLM 295
           S++S +L+ G +S R+    L+  +E +     P + A      S+ + L W   +   +
Sbjct: 270 SRISVHLAYGTISLRRVVYELRRRQEELRGANGPDAAARRKALSSFDSRLHWHSHFTQKL 329

Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              P +   + +IP  + +  +  D  L  AW  G TGFP++DA MR L   GW++ R+R
Sbjct: 330 EDAPRI-ENESYIPAFDALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMR 388

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF   D  +DWR     +    L  D        Q    +G   +   RI+NP  Q
Sbjct: 389 AMLCSFAAYDCWLDWRRFAPTYGG--LMADYVPGIHYPQVQMQSGTTGINRVRIYNPVKQ 446

Query: 415 GKRFDPQGTFIRHWLPELNNV-PTQYIHAP--HSWLDKND----LSLNYPLPIVDHKKAC 467
           GK  DP GTFIR W+PEL+++  T Y+HAP   S +++      +  +YP  +VDH  A 
Sbjct: 447 GKEQDPDGTFIRRWVPELSHLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDAY 506

Query: 468 HHTLNQYYAAKKQ 480
           HH  +  +  +++
Sbjct: 507 HHAQDAIHELRQR 519


>gi|307107980|gb|EFN56221.1| hypothetical protein CHLNCDRAFT_51884 [Chlorella variabilis]
          Length = 1184

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 136/287 (47%), Gaps = 44/287 (15%)

Query: 208 FPIGEQNALHILRKFCKEK---VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           F  GE  AL  LR +  +      Y+  +  +     +++L+P+L+ G LSPR  +  +K
Sbjct: 247 FEGGESAALARLRYYLFDSNLVATYFDTRNGMLGGDYSTKLAPWLAHGCLSPRSVYYDIK 306

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---EKIEWNKDSH 321
                     KS  +  + ELIWR+FYR    F+      K F+      +  +W+ D+ 
Sbjct: 307 RYERQTGTANKS-TYWVVFELIWRDFYR----FFALKHGSKIFLEGGTTGQAPQWSNDAE 361

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIG--------------------WMHNRLRMITASFL 361
            L+ WK+G TG+P++DA  R+L   G                    +M NR R   ASFL
Sbjct: 362 ALRRWKEGRTGWPLVDANQRELRATGKSRPAGGRPMRIRALLLACGFMSNRGRQNVASFL 421

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
             DL VDWR G ++F   LLD D+ SN G W  AA      V  F I   T Q K +D +
Sbjct: 422 ALDLGVDWRRGADWFEHLLLDYDVCSNWGNWVAAAGLTGGRVNKFNI---TKQSKDYDSE 478

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPI 460
           G +IR W+PEL  VP + IH P  WL   +        + ++YP P+
Sbjct: 479 GQYIRTWVPELACVPARRIHEP--WLMSREEQAAAGVQIGVDYPAPL 523


>gi|294508369|ref|YP_003572427.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
 gi|294344697|emb|CBH25475.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
          Length = 537

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 212/493 (43%), Gaps = 43/493 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW + DLR+ D++ L  A       V+ +++A P          R    I  +L+++
Sbjct: 49  TQIVWYKRDLRVGDHRPLAEAADR--GPVLPLYVAEPSIAAGADYHPRHWTLIREALIEL 106

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKLLEK 125
           +  L+++G      +C    + +E L +     R+    +    R +E ++  RD     
Sbjct: 107 RARLAKRGQPLIV-RCGEMPEVLESLRATAGPLRLWAHEETGNQRTHERDQRVRDWAR-- 163

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
              H V          +P   ++       +    ++ ++ + LV       P  A++  
Sbjct: 164 --AHEVPFTE------VPSRGVVRGPHDRDEWADRWKASMDRPLVH------PPDALQPV 209

Query: 186 GPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRDIPAIQGT 242
             V P  +P   D   + +   +  IGE  A   L  F +E+   Y     R  PA    
Sbjct: 210 DSVAPGPMPSHADLGLRPSTAALQQIGEAEAHRTLDSFLRERGRNYRRAMSRPGPAQTEC 269

Query: 243 SQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGA-----FSWLNELIWREFYRHLM 295
           S++S +L+ G +S R+    L+  +E +     P + A      S+ + L W   +   +
Sbjct: 270 SRISVHLAYGTISLRRVVYELRRRQEELRGANGPDAAARRKALSSFDSRLHWHSHFTQKL 329

Query: 296 AFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              P +   + +IP  + +  +  D  L  AW  G TGFP++DA MR L   GW++ R+R
Sbjct: 330 EDAPRI-ENESYIPAFDALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMR 388

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF   D  +DWR     +    L  D        Q    +G   +   RI+NP  Q
Sbjct: 389 AMLCSFAAYDCWLDWRRFAPTYGG--LMADYVPGIHYPQVQMQSGTTGINRVRIYNPVKQ 446

Query: 415 GKRFDPQGTFIRHWLPELNNV-PTQYIHAP--HSWLDKND----LSLNYPLPIVDHKKAC 467
           GK  DP GTFIR W+PEL+++  T Y+HAP   S +++      +  +YP  +VDH  A 
Sbjct: 447 GKEQDPDGTFIRRWVPELSHLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDAY 506

Query: 468 HHTLNQYYAAKKQ 480
           HH  +  +  +++
Sbjct: 507 HHAQDAIHELRQR 519


>gi|194380702|dbj|BAG58504.1| unnamed protein product [Homo sapiens]
          Length = 336

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 117/236 (49%), Gaps = 14/236 (5%)

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +   + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+       
Sbjct: 7   LASPTGLSPYLRFGCLSCRLFYYRLWDLYKKV-KRNSTPPLSLFGQLLWREFFYTAATNN 65

Query: 299 PSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           P      G P      +I W+++   L  W +G TGFP IDA M QL   GW+H+  R  
Sbjct: 66  PRFDRMEGNPI---CIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHA 122

Query: 357 TASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
            A FL + DL V W  G   F   LLD D + N G W W + +      +F  + P   G
Sbjct: 123 VACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFG 181

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465
           +R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +
Sbjct: 182 RRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAE 237


>gi|237654599|ref|YP_002890913.1| cryptochrome, DASH family [Thauera sp. MZ1T]
 gi|237625846|gb|ACR02536.1| cryptochrome, DASH family [Thauera sp. MZ1T]
          Length = 515

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 199/490 (40%), Gaps = 90/490 (18%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSH---F 60
           V + W RNDLR+ DN AL  AC ++  +++ V+        P +W   G   R  H   F
Sbjct: 5   VVIFWFRNDLRVGDNLALVEACASA-GRLLPVYCHDPSADAPTRW---GFVRRGPHRRAF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           + A+L  +  +L  +G      Q +    ++                      I     +
Sbjct: 61  LEAALGDLDAALRARGSALL--QLNGAPRAV-----LPALAEAVGAAVVVCEAIAAPEEE 113

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------------- 165
             L       +  K+   S LL P ++   A ++ KV+T FR+A+               
Sbjct: 114 DELAALRAAGLKVKAIWQSTLLDPAALPFAAARLPKVFTAFRQAVESAGLQPPAPLPAPR 173

Query: 166 ------------IQNLVQADLRSLPVPAIRLTGPVT----------PSN--IPRFFDYPF 201
                        ++    DLR+   P +    P            P N  + R +    
Sbjct: 174 TLPPWPPLDRPTRRSDASRDLRAGRSPGVAGRDPCAGRSPGVERAEPGNRDLRRSYGGSC 233

Query: 202 QAID----------------PMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQGTS 243
            A D                P F  GE+ AL H+ R F  ++  +Y   R+ +  +  +S
Sbjct: 234 GAADALTVEIGEQASFPWWQPAFAGGERAALAHLARYFAGDRPRHYKATRNGLSGVDFSS 293

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR--HLMA---FY 298
           + SP+L+ G LS R     L+   ++    P  G++    EL+WR+++R  HL      Y
Sbjct: 294 KFSPWLAQGALSARVALAALRRHEIEQ--GPSDGSYWLWFELLWRDYFRLLHLQQGRRLY 351

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +  + +         +   D+    AW+ G TG P IDA MR+L   GW+ NR+R I A
Sbjct: 352 RARGLNE------GAAQPAHDAAAFAAWRVGGTGHPFIDAGMRELAATGWLSNRMRQIVA 405

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S+L+ DL  DWR G  +F +QL+D D+ SN G W + A  G D     R F+P  Q   +
Sbjct: 406 SYLIHDLGCDWRAGAAWFEAQLVDYDVYSNQGNWLYIAGRGTDPR-GGRRFDPDRQAAMY 464

Query: 419 DPQGTFIRHW 428
           D  G +   W
Sbjct: 465 DADGAYRALW 474


>gi|37725009|gb|AAO23971.1| cryptochrome 2A [Pisum sativum]
          Length = 375

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 167/373 (44%), Gaps = 17/373 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL  + +
Sbjct: 7   IVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHLDQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
           SL   G      +    D ++  L       + TK+ +N  Y+ ++ VR   + EK ++ 
Sbjct: 65  SLKSLGAKLVLIKT---DSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVEL 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  KS++  +L  P  + +     +  + PF +  +   ++      P   I   G V 
Sbjct: 122 GISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKVE 181

Query: 190 PSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             +I         + P  A+    +  G  NA   L +F  +++  Y + R       TS
Sbjct: 182 RCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGGDSTS 241

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFSWLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ +   + + +    +     K     +L  +  RE+ R+L   +P
Sbjct: 242 LLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLCFNFP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +  +       WN D    + W+QG TG+P++DA MR+L   GWMHNR+R+I +S
Sbjct: 302 -FTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 360

Query: 360 FLVKDLLVDWRIG 372
           F VK LL+ W+ G
Sbjct: 361 FAVKMLLLPWKWG 373


>gi|224051116|ref|XP_002198900.1| PREDICTED: cryptochrome 2 (photolyase-like), partial [Taeniopygia
           guttata]
          Length = 540

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 135/286 (47%), Gaps = 23/286 (8%)

Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249
             +P   + P ++  GE  AL  L K  + K +  V   + P +   S       LSPYL
Sbjct: 165 LGFPTDGLAPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 222

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPF 307
             G LS R  + RL E +  +  +  +   S   +L+WREF+       P      G P 
Sbjct: 223 RFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPI 281

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366
                +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL 
Sbjct: 282 CI---QIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 338

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + W  G   F   LLD D + N G W W + +      +F  + P   G+R DP G +++
Sbjct: 339 ISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVK 397

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
            +LP+L   P++YI+ P +  +      K  + ++YP P+V+H + 
Sbjct: 398 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 443


>gi|205372682|ref|ZP_03225493.1| deoxyribodipyrimidine photolyase [Bacillus coahuilensis m4-4]
          Length = 482

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 133/501 (26%), Positives = 214/501 (42%), Gaps = 64/501 (12%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ D+R+ D++ LY A    +   + V++  P  W+   +S R  HFI  SL ++
Sbjct: 1   MNIVWLKRDIRLQDHRPLYEASLRGET--LVVYVVEPSIWKDEPLSMRHLHFILESLEEM 58

Query: 69  QKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY------EINEVRRDK 121
           Q S  S  G +  +H      + I+ L     Q    +L+ +++Y      E N++ +D 
Sbjct: 59  QNSFNSIGGKLAVFH-----GEMIDALSLLYTQYGPFRLWSHKEYGPKALLERNKIVKD- 112

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +EK   H      +  + +    S +    + ++V+              D   LP P 
Sbjct: 113 WMEKNGLH---WTEYQATAISQKSSSIKQFKKEWQVFM-------------DEPVLPKP- 155

Query: 182 IRLTGP-VTPSNIPR---FFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYV 231
           IR+  P   PS+  +    +    Q I    PI      GE  A   L+ F  E+  +Y 
Sbjct: 156 IRIQAPDKLPSSFIKDLAGYKKKSQGIKGE-PIRFGQQGGELLAWDTLQTFLDERFVHYE 214

Query: 232 EQRDIP---AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS------WL 282
             +  P   +I G S+LSPYL+ G +S R  +  +      L  K K  + S      +L
Sbjct: 215 TNQMNPLASSISG-SRLSPYLAFGNISSRDVYQTV------LSSKQKGESHSLEQLDLFL 267

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           + ++ R+F    +   P++       P  + +  N  S       QG TG PI+DA +R 
Sbjct: 268 SRILRRDFLHQRLIENPTLHQ-YSLHPLFDGVRLNLSSKEYNRILQGETGIPIVDAGVRS 326

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW++   R +   F+ + +   W+       S  LD D   +    QW A T    
Sbjct: 327 LKLTGWLNESTRKMIVMFMCQTMRQSWQKVAFDLGSLFLDYDPGIHYSEIQWQAGTWGSK 386

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
            P  R+ NP   GK  DP G F++ ++ EL  VP +YIH P  W      SL YP PIVD
Sbjct: 387 PP--RVVNPIKIGKEQDPNGEFVKRYVQELKTVPVEYIHEP--WKYPGVFSLQYPAPIVD 442

Query: 463 HKKACHHTLNQYYAAKKQSLL 483
             K    +  ++   K    L
Sbjct: 443 VVKVNKESRRKFKEIKAAQTL 463


>gi|262191004|ref|ZP_06049214.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae CT 5369-93]
 gi|262033105|gb|EEY51633.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae CT 5369-93]
          Length = 461

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 185/430 (43%), Gaps = 27/430 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G          +    + L     Q  +T ++ +     +E +   
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQTIA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180
            + +      I +    S+L  P   L  AL+ +   +T FRK      V+    S P+ 
Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
             R+  P+         D   +     F  GEQ  L H    F       Y E R+ +  
Sbjct: 172 YPRVLPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKETRNGLDG 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      Y
Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR R + A
Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGVTPFPIVNACMRQLNQTGYMSNRGRQLVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   +
Sbjct: 349 SCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 407

Query: 419 DPQGTFIRHW 428
           DP+G F+  W
Sbjct: 408 DPKGEFVAKW 417


>gi|71005224|ref|XP_757278.1| hypothetical protein UM01131.1 [Ustilago maydis 521]
 gi|46096457|gb|EAK81690.1| hypothetical protein UM01131.1 [Ustilago maydis 521]
          Length = 881

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/235 (35%), Positives = 115/235 (48%), Gaps = 24/235 (10%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFY-------RH 293
           ++++SP+L+ G +SPRQ W  L +          +    W+  EL+WR+++        H
Sbjct: 379 STKMSPFLAYGSVSPRQIWEALDDHERKFGEDQNT---YWVRFELLWRDYFFFVAEKFGH 435

Query: 294 LM--------AFYPSVCMGKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQL 343
           L+        A  P     K    W  K +  KD   H +    +G TG P IDA + +L
Sbjct: 436 LLYDLGGFERATDPRQAAKKMEDGWWRKWDPLKDGPDHEMTRLLEGRTGIPFIDANILEL 495

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              G+M NR R   ASFL KDL  DWRIG E+F S L+D D  SN G WQ+ A  GND  
Sbjct: 496 RESGFMSNRGRQNVASFLSKDLGYDWRIGAEFFQSHLIDYDPTSNYGNWQYVAGVGNDPR 555

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              R FN   Q K +D  G +++ W+P L N+   Y+H P  WL   D    Y L
Sbjct: 556 AS-RQFNTVKQAKDYDSHGDYVKLWIPALRNLHADYVHTP--WLLTADERRRYGL 607


>gi|295135590|ref|YP_003586266.1| cryptochrome-like DNA photolyase family protein [Zunongwangia
           profunda SM-A87]
 gi|294983605|gb|ADF54070.1| cryptochrome-like DNA photolyase family protein [Zunongwangia
           profunda SM-A87]
          Length = 429

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 202/447 (45%), Gaps = 40/447 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ--HGI---SARQSHFI 61
           MS  L+W  N+LR+ DNKAL+ AC   + +VIAV+   P ++++  +G       ++ F+
Sbjct: 1   MSTGLIWFENNLRVKDNKALFEACEKHE-QVIAVYCFDPRKFKKTKYGFPKTGKFRAKFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+  +Q++L+Q  I              E +       ++  +++  ++   E +   
Sbjct: 60  IESIKNLQENLNQLNISLLIF----LQKPEEIIPEIARNHKIEAIYFQEEWTTEEKQIIA 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLR-SLPV 179
            L+K+L   +  +SF    L  P  I      ++ KVYT FRK   Q +   D+R  + +
Sbjct: 116 ALKKKLP-TIDFQSFYTQFLFHPEDIAYGDFNEIPKVYTEFRKKCEQYV---DVRKEIEI 171

Query: 180 P-----AIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFC--KEKVYY 229
           P     + R+       N+       +Q        F  GE  A   +  +     K+  
Sbjct: 172 PKQKPESNRIKNTSKTPNLKELGLEDYQQDSRTAFSFKGGEDEAWKRIDYYFWKTTKLSE 231

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y + R+ +     +S+LS +L+ G +S    ++++K+   +  I      +  + ELIWR
Sbjct: 232 YKQTRNGLLGKDYSSKLSAWLANGSISAVSIFHQVKK--FEHEITKNQDTYWLIFELIWR 289

Query: 289 EFYRHLMAFYPSVCMGKPFIPWT----EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           +F++     Y S+  G      +    +K++W      LQ W  G T    ++A + ++ 
Sbjct: 290 DFFK-----YTSLKHGNSIFKLSGILDKKLDWKFSIESLQQWINGETKEDFVNANINEIA 344

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+M NR R    SF  K+L  DWR G  YF S L+D D+ SN G W + +  GND  P
Sbjct: 345 ATGFMSNRGRQNVNSFWAKELKQDWRAGAAYFESVLVDYDVHSNWGNWMYNSGVGND--P 402

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPE 431
             R FN   Q   +DP   ++  WL +
Sbjct: 403 RDRKFNIKKQADLYDPDNQYVDTWLKK 429


>gi|90577812|ref|ZP_01233623.1| deoxyribodipyrimidine photolyase, putative [Vibrio angustum S14]
 gi|90440898|gb|EAS66078.1| deoxyribodipyrimidine photolyase, putative [Vibrio angustum S14]
          Length = 491

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 211/491 (42%), Gaps = 43/491 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ DLR+TD++AL  A  N+D  V+ ++I  P        S R   FI+ SL  +
Sbjct: 4   INVVWLKRDLRLTDHQALSVAA-NNDYPVMLIYIMEPMLLSDPHYSERHWRFIWQSLEDM 62

Query: 69  QKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
              L+     VF +H      +++E LD       +  LF ++     E+      E+ L
Sbjct: 63  NHQLACVNSQVFIFH-----GNAVECLDKLMHHCPINALFSHQ-----EIGLGCTFERDL 112

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             +  C K          G+++  A    K  T + K     +++A + S+ +  +   G
Sbjct: 113 NIKAWCDKQQIQWHEFQQGAVIRGA----KNRTNWDKHW-NRVMRAPVFSVNLDKVNWVG 167

Query: 187 PVTPSNIPRFFDYP---FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242
                     F  P    + +  M   G   AL  L  F   +   Y      P    T 
Sbjct: 168 TCPEQLAYMLFSPPESWRERVQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTASRTA 227

Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S+LSPYL+ G +S RQ + ++   +     +    AFS  + L W   +       P +
Sbjct: 228 CSRLSPYLAWGNISLRQVYQQVLAHWNVKGFRRSLIAFS--SRLHWHCHFIQKFESEPDI 285

Query: 302 ---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
              CM + +     +   +K+   L AWK+G TG P+IDA MR L   G+++ R+R +  
Sbjct: 286 EFYCMNRTYDRLLAE-SCSKNKMKLNAWKKGNTGIPLIDACMRCLYHTGYINFRMRSMLV 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL   L +DWR G  +     LD +   +   +Q  A  G   +   RI+NPT Q +  
Sbjct: 345 SFLTHHLNIDWRDGVTHLAQLFLDFEPGIHYSQFQMQA--GVTGINTIRIYNPTKQAQEH 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW---------LDKNDLSLNYPLPIVDHKKACHH 469
           DP G FI  W+PEL N+P   +  P +          LD N     Y  PI+D +++  +
Sbjct: 403 DPDGEFIHKWVPELANIPVPLLFEPWTLTELEVVMYQLDNNSC---YLYPIIDLERSAKN 459

Query: 470 TLNQYYAAKKQ 480
              + +  K +
Sbjct: 460 ARERLWGWKAR 470


>gi|87123904|ref|ZP_01079754.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
 gi|86168473|gb|EAQ69730.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
          Length = 504

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 210/493 (42%), Gaps = 57/493 (11%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A     + LVW + DLR  D++ L  A       V+ ++I  P+ W Q   SARQ  F  
Sbjct: 2   AVADQPLQLVWFKRDLRSVDHRPLALALER--GPVLPLYIVEPQFWLQPDASARQWAFCR 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ----YEINEVR 118
            +L  +Q+ LS  G            D++E L+   L+  V  L+ + +    +     R
Sbjct: 60  EALEALQERLSALGQPL----VVRVGDAVEVLERARLRLGVAALWSHEETGNAFTYARDR 115

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           R K   +   H +  +        P   ++    +     T +++ +   L    L   P
Sbjct: 116 RVKAWAR--SHGIPWRE------CPQFGVIRGLRRREGWATRWQERMATPLTPEPLALPP 167

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQR 234
           +PAI+      P  +P   D    A DP  P     G   A  +L+ F + +V  Y    
Sbjct: 168 LPAIQ------PGGLPSASDLGLTA-DPC-PCRQRGGRPQAETVLQDFLQRRVQRYCGSI 219

Query: 235 DIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
             P  A  G S+LSPYL+ G LS R+    + +    L  +   G  ++ + L W   + 
Sbjct: 220 SSPLTAFDGCSRLSPYLTWGCLSLRE----VVQASASLTCR---GVRNFRSRLHWHCHFI 272

Query: 293 HLMAFYPSVCMGKPFIPWTEKIE-WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             +   P++   + F P+   I  W  D+   QAW +G TG P +DA MR L   GW++ 
Sbjct: 273 QKLESEPAI-EHRDFHPFMRDIRVW--DAERYQAWAEGRTGLPFVDACMRALIAHGWINF 329

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS---TGNDSVPYFRI 408
           R+R +  S     L + WR    +     +D        G  W+     +G+ S+   RI
Sbjct: 330 RMRAMLMSVATYHLWLPWRDTGLHLARLFVD-----YEPGIHWSQCQMQSGSTSINTIRI 384

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           +NP  QG   DP+G FIR W PEL + P  ++H P  W    D    +P PIVD  +A  
Sbjct: 385 YNPIKQGLDHDPKGVFIRRWCPELAHRPDVWLHEP--WRGGGD----HPAPIVDPDQAAR 438

Query: 469 HTLNQYYAAKKQS 481
              ++ +A ++ +
Sbjct: 439 EARDRIWAIRRAA 451


>gi|254421675|ref|ZP_05035393.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
           7335]
 gi|196189164|gb|EDX84128.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
           7335]
          Length = 550

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 208/489 (42%), Gaps = 57/489 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +VW R DLRI D++ LY A       ++ VF+      +     + +  F+ + L 
Sbjct: 1   MNRTVVWFRRDLRIADHEPLYRAARR--GLIVPVFVFDRALLKHPETGSGRVRFMLSCLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE--INEVRRDKLLE 124
            + + L  +G            D +E L     + +   ++    YE     VR  +L +
Sbjct: 59  ALDEDLRSRGGRLILRS----GDPVEVLPKLVRETQSDGIYSYIDYERIYGRVRDARLNQ 114

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIR 183
              +  +  + F+     P G   +        Y  +R+   Q++       +P P  I 
Sbjct: 115 ALTREGLKVRWFE-----PLGGTPDLV-----PYPDYRQLWYQSVRSP---QIPTPQKIE 161

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ-NALHILRKFCKE-KVYYYVEQRDIPAIQG 241
           +   ++   +P        +   + P G    A  +L  F  E K   Y  Q   P+   
Sbjct: 162 VPPDISSDELPSLEAVGHISDGMLVPQGGTIEARKLLNLFFDERKAQRYYWQLSYPSANA 221

Query: 242 TSQLSPYLSIGVLSPRQC----WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           TS LSPYL  G +S R+C    W+R  +       + +  A   L+ L W   +     +
Sbjct: 222 TSGLSPYLKYGAISIRECAQTIWDRQADPRWWTDKRVERSAHQLLSRLRWGSGFTQRFRY 281

Query: 298 YPSVCMGKPFIPW----------TEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQL- 343
            P + +   + P+           E+++   W+ +    +AWK G TG+PIIDAA R L 
Sbjct: 282 LPQLEVRSLYTPFETGPSDSLLPAEELQNGGWDDNFEHYEAWKNGETGYPIIDAAARCLK 341

Query: 344 NTIGWM--HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
            T GW+  + R+R I ASFL   + +DWR G  +FM  L+DGD   ++  +QWA   G  
Sbjct: 342 ETGGWLALNFRVRAIYASFLCNLIGMDWRYGALHFMRYLIDGDCPIDH--YQWAQQAGVT 399

Query: 402 SV---PYFRIFNPTIQG-KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457
                 + RI+NP  +   R DPQG F+  WLPEL ++  + +  P            YP
Sbjct: 400 HCLNKAWIRIYNPQQEAIDRCDPQGRFVYRWLPELRHLKPEQLGTPPK-------VKGYP 452

Query: 458 LPIVDHKKA 466
            PI+++ +A
Sbjct: 453 QPILNYAQA 461


>gi|90578157|ref|ZP_01233968.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14]
 gi|90441243|gb|EAS66423.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14]
          Length = 443

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 127/447 (28%), Positives = 206/447 (46%), Gaps = 51/447 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQHGISARQSHFIYASLL 66
           L W  NDLR+ DN  L+ A  + D+ +   F+   +Q    ++   +   +  F+  +L 
Sbjct: 6   LYWFTNDLRLHDNPILHQAYEHCDSLLCVYFMEPQKQQFNRYQLVSVGEIRHRFLLQALQ 65

Query: 67  QVQKSLS---QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            +Q +L+   Q+ +V Q     +    IE       Q  +  ++ +R     E ++ + L
Sbjct: 66  ALQSNLATLGQRLLVMQADPMLSMPVLIE-------QYGINLIYRSRHCGWYEQQQWRYL 118

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++   H    +  D   L     +      M K Y+ FRK + QN+  +    L VP   
Sbjct: 119 KQCYPHLRFVE-VDTHTLYSQDQLPFPLSDMPKSYSKFRKQIEQNVTVSS--PLLVPDYL 175

Query: 184 LTGP-VTPSNIPRFFDYPFQAIDPMFPIGEQNA--LHILRKFCKEKVYYYVEQRDIPAIQ 240
              P V  S+            D +   G +NA  +H+ + F       Y E R+  AI+
Sbjct: 176 PPQPNVFCSDYLDIRHVHISDNDQVEWHGGENAALMHLQQYFSSSLPSNYKETRN--AIE 233

Query: 241 G---TSQLSPYLSIGVLSPRQCWNRL--KEEFVDLLIKPKSGAFSWLN-ELIWREFYRHL 294
           G   +++ SP+L+ G LS +     L   E++     K K+ +  W+  EL+WREF++  
Sbjct: 234 GWDNSTKFSPWLACGALSAKMIMATLLDYEKY-----KEKNSSTYWIFFELLWREFFQ-- 286

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA--------WKQGYTGFPIIDAAMRQLNTI 346
              + +  +G+       +    ++  LL +        W +G T +PI++A M+QLN  
Sbjct: 287 ---WHAHAVGRDLY----RFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLNKT 339

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+M NR R I AS LV +L +DWR G  YF  QL+D D+A+N G WQ+ A  G DS    
Sbjct: 340 GYMSNRGRQIVASCLVNELSIDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSREK- 398

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELN 433
           R F+   Q + FDP   FIRHW  + N
Sbjct: 399 RWFDLEKQTRIFDPNHHFIRHWRGDEN 425


>gi|254501390|ref|ZP_05113541.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
           DFL-11]
 gi|222437461|gb|EEE44140.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
           DFL-11]
          Length = 519

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 208/491 (42%), Gaps = 47/491 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +H+VW + DLR+ D++ L  A  +    V+ +++  P+ W Q  +SAR   F+   L  +
Sbjct: 5   IHIVWFKKDLRVFDHEPLKRA--SLQGPVLPLYVIEPDLWDQPDMSARHYAFLSECLQDL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127
            + LS+ G        S  D      + Y    R+  L+ + +       +RDK +    
Sbjct: 63  DQELSRLGKPLLLRTGSVTDVLTYISERY----RIAGLWSHEETGNGWTYQRDKAVA--- 115

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                C++  +SV   P +       + ++ +    A   +   A+ + +  PA+R    
Sbjct: 116 ---AWCRA--NSV---PWTECRQTGVIRRLNSRNGWAGQWDRFMAE-QPIDPPALRPLSG 166

Query: 188 VTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKF--CKEKVYYYVEQRDIPAIQGT 242
           +T   +P+  D    A DP       G   AL  L  F   + K Y       + A +  
Sbjct: 167 LTSGPLPKAADLGL-AADPCPDRQIGGRVAALETLESFLFTRGKPYRAAMATPVKAFEAC 225

Query: 243 SQLSPYLSIGVLSPRQ----CWNRLKEEFVDLLIKPKS---GAF-SWLNELIWREFYRHL 294
           S++SPYL+ G +S R+     W R + E      K +S   GA  S+   L W   +   
Sbjct: 226 SRMSPYLTFGTISMREVAQATWAR-QAELKRSDFKGRSTWQGAMRSFSGRLHWHCHFMQK 284

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +   P +        +        D+  LQAW++G TG P +DA MR L   GWM+ R+R
Sbjct: 285 LEDEPRLEFENLHRAYDGLRPSTPDAERLQAWQRGETGLPFVDACMRALTATGWMNFRMR 344

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA---ASTGNDSVPYFRIFNP 411
            +  +     L +DWR    +      D        G  W+     +G   +   RI+NP
Sbjct: 345 AMLTAVASYHLWLDWRQPGLHLARLFTD-----YEPGIHWSQIQMQSGTTGINTIRIYNP 399

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND---LSLNYPLPIVDHKKACH 468
             QGK  DP G F++ W+PEL ++    I+ P  W  +N    L   YP P+VD+  A  
Sbjct: 400 VKQGKDQDPDGIFVKRWVPELKDIDPALINEP--WKAENAGKVLGKTYPFPVVDYLSAAK 457

Query: 469 HTLNQYYAAKK 479
              ++ +A +K
Sbjct: 458 EARDKVWAVRK 468


>gi|153828573|ref|ZP_01981240.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39]
 gi|148875968|gb|EDL74103.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39]
          Length = 461

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 185/430 (43%), Gaps = 27/430 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQAAQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G          +    + L     Q  +T ++ +     +E +   
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQAIA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180
            + +      I +    S+L  P   L  AL+ +   +T FRK      V+    S P+ 
Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
             R+  P+         D   +     F  GEQ  L H    F       Y E R+ +  
Sbjct: 172 YPRVLPPIEQGWQLPLMDIVAEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLDG 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      Y
Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR R + A
Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   +
Sbjct: 349 SCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 407

Query: 419 DPQGTFIRHW 428
           DP+G F+  W
Sbjct: 408 DPKGEFVAKW 417


>gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis]
 gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis]
          Length = 541

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/251 (35%), Positives = 120/251 (47%), Gaps = 22/251 (8%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLNELIWREFYRHLMAFYPS 300
           S +SPYL  G LSPR  + RL    +DL  K K G    S   +L+WREF+  +    P+
Sbjct: 267 SGVSPYLRFGCLSPRLFYYRL----MDLYRKVKGGPPPTSLYGQLLWREFFFVVSTNNPN 322

Query: 301 VCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
               +   P    I+W  D  +   LQ W    TGFP IDA M QL   GW+H   R+  
Sbjct: 323 FDKMESN-PICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQEGWIHYLARVAI 381

Query: 358 ASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           ASFL +  L + W  G + F   LLD D +SN G W W + +   S  +F    P    K
Sbjct: 382 ASFLTRGCLWISWEAGMKVFAEHLLDADWSSNAGNWMWWSYSAF-SQQFFNPPCPVEFSK 440

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW--------LDKNDLSLNYPLPIVDHKKACH 468
             D  G +IR +LP L   P +YIH P  W        + K  +  +YP P+VDH+KA  
Sbjct: 441 SLDASGDYIRKYLPVLKGFPARYIHEP--WKAPLNVQKMAKCIIGKSYPSPMVDHEKAVS 498

Query: 469 HTLNQYYAAKK 479
             + +  +  K
Sbjct: 499 KNMEEMTSVYK 509


>gi|254285235|ref|ZP_04960200.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226]
 gi|150424507|gb|EDN16443.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226]
          Length = 461

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 185/430 (43%), Gaps = 27/430 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G          +    + L     Q  +T ++ +     +E +   
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQAIA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180
            + +      I +    S+L  P   L  AL+ +   +T FRK      V+    S P+ 
Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
             R+  P+         D   +     F  GEQ  L H    F       Y E R+ +  
Sbjct: 172 YPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKETRNGLDG 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      Y
Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR R + A
Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGVTPFPIVNACMRQLNQTGYMSNRGRQLVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   +
Sbjct: 349 SCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 407

Query: 419 DPQGTFIRHW 428
           DP+G F+  W
Sbjct: 408 DPKGEFVAKW 417


>gi|170047814|ref|XP_001851403.1| DNA photolyase [Culex quinquefasciatus]
 gi|205694137|sp|B0WRR9|CRY1_CULQU RecName: Full=Cryptochrome-1
 gi|167870095|gb|EDS33478.1| DNA photolyase [Culex quinquefasciatus]
          Length = 499

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 141/299 (47%), Gaps = 37/299 (12%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPA------IQGTSQLSPYLSIGVLSPRQCWNRLK 264
           GE  AL +L +  K++   + E   +P       +   S +S  L  G LS R  +  + 
Sbjct: 179 GEAKALELLGRRLKQEEEAFREGYYLPTQARPDFLAPPSSMSAALRFGCLSVRMFYWCVH 238

Query: 265 EEFVDLLIKPK---SGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEK 313
           + F  +    +    G      +LIWRE++  +    P         +C+    IPW E 
Sbjct: 239 DLFARVQANNQLKHPGGHHITGQLIWREYFYTMSVHNPHYAVMELNPICLN---IPWYEA 295

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIG 372
               KD  L   WK+G TGFP+IDAAMRQL   GW+H+ LR ITA+FL +  L + W  G
Sbjct: 296 ----KDDSL-DRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNITATFLTRGGLWISWEAG 350

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
            ++F+  LLD D +   G W W +S+  +  +      +P    +R DP+G +++ +LPE
Sbjct: 351 VQHFLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPVALARRLDPKGEYVKRYLPE 410

Query: 432 LNNVPTQYIHAPHSWLDKNDL--------SLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           L   P  Y+H P  W    +L          +YP P+V+  +      N+  A +++ L
Sbjct: 411 LEKFPALYVHEP--WKAPPELQEQYGCVIGKDYPAPMVNLAEVNKCNANKMNAIRQKLL 467


>gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio]
 gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio]
          Length = 639

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 215/498 (43%), Gaps = 57/498 (11%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MSV+ V W R  LR+ DN AL  A + +D  +  V+   P       +   +  F+  SL
Sbjct: 1   MSVNSVHWFRKGLRLHDNPALLEALNGADT-LRCVYFLDPWFAGASNLGVNRWRFLLQSL 59

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL +      V +      F     EW        +V++L +    E     RD 
Sbjct: 60  EDLDASLRKLNSCLFVIRGQPADIFPRLFKEW--------KVSRLTFEFDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSI--LNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            ++K     + C++  + ++    ++  L+  +++    +P      Q LV +     P 
Sbjct: 112 AIKK-----LACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSMEPPDPP 166

Query: 180 PAIRLTG----PVTP--------SNIPRFFDYPF--QAIDP-MFPIGEQNALHIL-RKFC 223
            +    G     VTP          +P   +  F  + + P ++P GE  AL  + R   
Sbjct: 167 LSSPDRGMMGKCVTPISENHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALKRMERHLG 226

Query: 224 KEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
            +    + E  + P +  +        LSPYL  G LS R  + +L + +  +  K  + 
Sbjct: 227 PDSTVAWQENFERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCKLTQLYKKV-KKNMNP 285

Query: 278 AFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           + S  ++++WREF+       P      G P      +I W++++  L  W +  TGFP 
Sbjct: 286 SISLYDKILWREFFYTAATNNPRFDRMEGNPICI---RIPWDRNAEALAKWAEAKTGFPW 342

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W  
Sbjct: 343 IDAIMMQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSW-L 401

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHS--WLD 448
             S  +    +F  + P   G+R DP G FIR +LP L + P +YI+    APH      
Sbjct: 402 CHSCSSFFQQFFHCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHDVQLAA 461

Query: 449 KNDLSLNYPLPIVDHKKA 466
           K  + ++YP P+V+H +A
Sbjct: 462 KCVIGVDYPKPMVNHAEA 479


>gi|330752633|emb|CBL87577.1| deoxyribodipyrimidine photolyase [uncultured Flavobacteria
           bacterium]
          Length = 485

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 140/290 (48%), Gaps = 27/290 (9%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEE 266
           P GE  A   L+ FC +++  Y      P       S+LSPY+S G L+ +  ++ L   
Sbjct: 193 PAGESMAWKYLKSFCNKRISGYAYNISKPEKSRISCSRLSPYISWGNLNIKLVYHHL--- 249

Query: 267 FVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPSVC------MGKPFIPWTEKIEWNKD 319
              + +K K+     +N +I R  ++ H +  +   C      + K F     K     +
Sbjct: 250 ---IKLKKKNKNLRSINAVISRLHWHCHFIQKFEVDCTYETDFINKGFNSLKRKT----N 302

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
              ++AW++G TG+P++DA+MR +   GW++ R+R +  SF V +L  DWR G  +   Q
Sbjct: 303 IKYIKAWEEGKTGYPLVDASMRAVKNTGWINFRMRAMLVSFFVHNLDQDWRDGVYFLAKQ 362

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
            LD +   +   +Q  A  G   +   RI+NP    K  DP G FI+ W+PEL N+P ++
Sbjct: 363 FLDYEPGIHYTQFQMQA--GTTGINTIRIYNPVKNSKDHDPDGVFIKKWIPELKNIPKEF 420

Query: 440 IHAP------HSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
           IH P       S + K  +  +YP PIV+ K+   H   + +   K  ++
Sbjct: 421 IHEPCLISEMESEIYKFKIGKDYPSPIVNLKETSKHAKEKIWGHLKNKMV 470



 Score = 37.4 bits (85), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
          +++++VW++ DLR  D+++ +AA  + +   + V+I   +       S R   FIY SL+
Sbjct: 4  LAINIVWIKRDLRTLDHESFHAA-ESKNIPYLPVYIFDNDLIDYPDTSDRHLGFIYNSLI 62

Query: 67 QVQKSLS 73
           + K LS
Sbjct: 63 DINKKLS 69


>gi|239994035|ref|ZP_04714559.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
          Length = 435

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 195/454 (42%), Gaps = 53/454 (11%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-----TPEQWRQHGISAR 56
           K T      L W R+DLR+ DN A+ A C  +  +V  ++I      TP  +    +   
Sbjct: 9   KRTNNNQRGLYWFRHDLRLHDNAAISALC-EAVQQVTFLYILDDKAFTPTTYGFAPMGKH 67

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F+  +L+ +++ L++ G              ++   + CL Q    L  + QY    
Sbjct: 68  RHTFLLQTLVDLKRQLAKLGHDLLI---------VKGDPAECLVQ----LMKSGQYSHLG 114

Query: 117 VRRDKLLEKRLQHRVICKSFDD-SVLLPPGSILNHAL-------QMYKVYTPFRKALIQN 168
           V      ++R Q   + + FD  +V+  P   L  A        +M  V++PFR+     
Sbjct: 115 VSEHCGFDERAQLNAVKRFFDSVTVIETPTFGLFDAQTLPFNIEEMPDVFSPFRRK---- 170

Query: 169 LVQADLRSLPV--PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHI 218
            V+   + L V  P   L  P TP     F      AID   P         GE  AL  
Sbjct: 171 -VEKHCKPLSVHPPMDSLPSPFTPQLDESFL----FAIDTDLPSPSQSSFVGGETAALTH 225

Query: 219 LRKFC---KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           L  +    K    Y   +  +   Q +++LS +L+ G LS R+   ++++   +  ++  
Sbjct: 226 LNTYLFDWKAAATYKDTRNALDTWQDSTKLSAWLANGSLSAREVIRQVQQ--FEATVEKN 283

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
              +    EL+WREF+  L   Y +       I   +K            W +G TG+PI
Sbjct: 284 DSTYWIYFELLWREFFHWLQCKYGANWFRFGGIQ-GKKPSTQHCPETFALWCEGKTGYPI 342

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DA MRQL   G+M NR R + AS  V +L  DWR G  +F  QL+D D+ SN G W + 
Sbjct: 343 VDACMRQLAETGYMSNRGRQLVASCFVHELRQDWRYGAAWFEHQLIDYDVGSNWGNWLYL 402

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           A  G+D   + R FN   Q + +D  G F + WL
Sbjct: 403 AGVGSDPRGH-RQFNLQKQTEIYDSDGQFCKKWL 435


>gi|221134514|ref|ZP_03560819.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999]
          Length = 501

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/499 (23%), Positives = 223/499 (44%), Gaps = 47/499 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ +VW + DLR+ D+  L    HN    ++ ++I  P+       S R   F+  SL+ 
Sbjct: 4   ALDIVWFKRDLRLRDHAPLCRVMHNP-RPILLLYIFEPDLIHDPHYSERHWRFVVQSLVD 62

Query: 68  VQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY--EINEVRRDKL 122
           +Q  LS+   + +V Q    + FD  +   D       +  ++ + +   E+  VR   +
Sbjct: 63  LQAQLSEFQTQVLVLQGAVQTVFDTLLSQCD-------IGNVYSHEEIGIELTYVRDRAM 115

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSLPVPA 181
            +   QH +            P S++   L   + ++ +   +++      DL ++P  +
Sbjct: 116 QQYFHQHHIKWTE-------TPYSVVRRGLNHRQDWSKYWHEMMEKPCDDPDLAAIPFVS 168

Query: 182 IRLTGPVTPSNIP-RFFDYP---FQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDI 236
             +   +T   +  +  + P   +    P F IG E+ A H    F  ++   Y      
Sbjct: 169 QTMVEQLTHQALAIQDIELPTPQWSESHPNFQIGGEKRAWHTYYSFLDQRGKSYARHISS 228

Query: 237 PAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           P +  +  ++LSPY++ G ++ +Q + +L           K    + ++ L W   + H 
Sbjct: 229 PELSRKSCTRLSPYIAWGNITIKQTYQKLDTLNEADYQGWKRALSAMVSRLHW---HCHF 285

Query: 295 MAFYPSVC------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +  + S C      +   +  +  +I+ +  S  L+AWK G TG PI+DA MR +   G+
Sbjct: 286 IQKFESECAMEMRPVNHAYQAYPYEIDQDVISRRLKAWKTGTTGIPIVDANMRAVIATGY 345

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFR 407
           ++ R+R +  S L     +DWR+G ++  +Q LD +   +   +Q  A  TG +++   R
Sbjct: 346 INFRMRAMLVSVLSHHFNLDWRLGVKHLAAQFLDFEPGIHYPQFQMQAGVTGTNTI---R 402

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIV 461
           ++NP  Q +  DPQG FI+ W+PEL   P   +H P         L   D +  YP P+V
Sbjct: 403 LYNPIKQSQEKDPQGRFIKQWVPELREYPDDMVHTPWAISPMERQLFGIDEAGEYPTPVV 462

Query: 462 DHKKACHHTLNQYYAAKKQ 480
           D + A     ++ ++ +K+
Sbjct: 463 DIEDAAKMARDRLWSFQKR 481


>gi|33866289|ref|NP_897848.1| putative deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           8102]
 gi|33639264|emb|CAE08272.1| putative deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           8102]
          Length = 491

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 126/480 (26%), Positives = 196/480 (40%), Gaps = 79/480 (16%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+ +VW + DLR+ D++ L  A   +   V+ +++  PE W+Q   S RQ  F   SLL+
Sbjct: 3   SLQIVWFKRDLRVDDHRPLLEAA--ARGPVLPLYVVEPELWQQPDASERQWLFCRESLLE 60

Query: 68  VQKSLSQ--------KGIVFQYHQCSNFDDSIEWLDS---------YCLQQRVTKLFYNR 110
           ++++L++         G V Q  + +     ++ L S         Y   +RV       
Sbjct: 61  LRQALAELGQPLVVRSGDVVQVLERARRQFGVDGLWSHEETGNGWTYQRDKRVGAWARAH 120

Query: 111 QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
             +  E+R+  +  +        K +++              QM +  TP          
Sbjct: 121 GIQWGEIRQFGVTRRMRSRNGWAKRWEE--------------QMAEPITPAPAG------ 160

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKE 225
                   VPA+     + P  IP   + P   + P         G    L  LR F + 
Sbjct: 161 --------VPALE---EIDPGVIP---ERPCPELLPDDCSQRQTGGRSIGLGELRDFLQH 206

Query: 226 KVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           +   Y      P  A  G S+LS YL+ G LS R+     +            G  S+ +
Sbjct: 207 RAPCYQRAMSSPKSAFTGCSRLSAYLAWGCLSMREVLQTSRHH-------SGRGVSSFES 259

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            L W   +   +   P +     F P+   I    ++  L AW +G TG P +DA MR L
Sbjct: 260 RLHWHCHFIQKLEDQPEIEFSD-FHPYMRGIR-ETNAERLAAWTEGRTGVPFVDACMRAL 317

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDS 402
              GW++ R+R +  SF   +L + WR    +   Q +D +   +   W Q    +G+ S
Sbjct: 318 KAHGWINFRMRAMLMSFASYNLWLPWRDSGLHLARQFVDYEPGIH---WSQCQMQSGSTS 374

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           +   RI+NP  QG   DPQG FIR W PEL +V T +IH P  W+    L      PIVD
Sbjct: 375 INTIRIYNPIKQGMDHDPQGVFIRQWCPELKDVSTIHIHEP--WM----LGGGRSAPIVD 428


>gi|89076746|ref|ZP_01163027.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp.
           SKA34]
 gi|89047602|gb|EAR53213.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp.
           SKA34]
          Length = 486

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 197/485 (40%), Gaps = 63/485 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VWL+ DLR+TD++AL  A  NS   V+ ++I  P        S R   FI+ SL  +  
Sbjct: 1   MVWLKRDLRLTDHQALSVAA-NSAFPVLLIYIMEPMLLSDPHYSERHWRFIWQSLEDMNH 59

Query: 71  SLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            L+     VF +H      +++E     CL Q +     N  +   E+      E+ L  
Sbjct: 60  QLACVNSQVFIFH-----GNAVE-----CLDQLMHHCPINALFSHQEIGLGCTFERDLNI 109

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           +  C             I  H  Q   V    +     +     +   PV ++ L     
Sbjct: 110 KAWCDK---------QQIQWHEFQQGAVIRGAKNRTNWDKQWNRVMREPVFSVNL----- 155

Query: 190 PSNIPRFFDYPFQAIDPMFP--------------IGEQNALHILRKFCKEKVYYYVEQRD 235
              +     YP Q  D +F                G   AL  L  F   +   Y     
Sbjct: 156 -DKVNWVSTYPEQLADMLFSPPESWREREQGMQTGGSTLALQTLDDFFSRRGKEYYRSIS 214

Query: 236 IPAIQGT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P    T  S+LSPYL+ G +S RQ + ++   + D   +    A S  + L W   +  
Sbjct: 215 SPTASRTACSRLSPYLAWGNISLRQVYQQVLAHWNDKGFRRSLIALS--SRLHWHCHFIQ 272

Query: 294 LMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
                P++   CM + +     +   +KD   L+AWK+G TG P+IDA MR L   G+++
Sbjct: 273 KFESEPAIEYFCMNRTYDRLLAE-SCSKDDLKLKAWKEGNTGIPLIDACMRCLYHTGYIN 331

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
            R+R +  SFL   L +DWR G  +     LD +   +    Q  A  G   +   RI+N
Sbjct: 332 FRMRSMLVSFLTHHLNIDWRDGVTHLAQLFLDFEPGIHYSQLQMQA--GVTGINTIRIYN 389

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW---------LDKNDLSLNYPLPIV 461
           PT Q +  DP G FI  W+PEL N+P   +  P +          LD N     Y  PI+
Sbjct: 390 PTKQAQEHDPDGEFIHKWVPELGNIPVPLLFEPWNLTELEVVMYQLDNNSC---YLYPII 446

Query: 462 DHKKA 466
           D K++
Sbjct: 447 DLKRS 451


>gi|153826234|ref|ZP_01978901.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2]
 gi|149739999|gb|EDM54174.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2]
          Length = 461

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 185/430 (43%), Gaps = 27/430 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G          +    + L     Q  +T ++ +     +E +   
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQAIA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180
            + +      I +    S+L  P   L  AL+ +   +T FRK      V+    S P+ 
Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
             R+  P+         D   +     F  GEQ  L H    F       Y E R+ +  
Sbjct: 172 YPRVLPPIEQGWQLPLLDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLDG 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      Y
Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR R + A
Sbjct: 290 GAKLFRFSGIGEKKLLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G +     R FN   Q   +
Sbjct: 349 SCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGANPRGS-RQFNLAKQAHTY 407

Query: 419 DPQGTFIRHW 428
           DP+G F+  W
Sbjct: 408 DPKGEFVAKW 417


>gi|167009787|ref|ZP_02274718.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 144

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 86/138 (62%), Gaps = 7/138 (5%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR+    G+MHNR+RMI ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G
Sbjct: 1   MREPWQAGYMHNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCG 60

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL- 454
            D+ PYFRIFNP +Q ++F+    +IR ++PEL  +P + I  P       L +  ++L 
Sbjct: 61  LDAAPYFRIFNPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLG 119

Query: 455 -NYPLPIVDHKKACHHTL 471
            NYP PIVD KK+    L
Sbjct: 120 QNYPKPIVDLKKSRDRAL 137


>gi|126663928|ref|ZP_01734923.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38]
 gi|126624192|gb|EAZ94885.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38]
          Length = 486

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 123/490 (25%), Positives = 210/490 (42%), Gaps = 50/490 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLR+ D++AL+ A   S  K + ++I  P   +    S R   FI  SL  +QK
Sbjct: 3   VVWFKRDLRLHDHEALHEALSTS-GKTLLLYIFEPSLMKDIHYSQRHFDFIKQSLEALQK 61

Query: 71  SLSQ---KGIVFQYHQCSNFD---DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
            L +   + ++ Q      F      I   + Y  Q+   KL Y R   + ++ ++K   
Sbjct: 62  ELQKYHTQILIIQGEAVPVFQKLTQVISIREIYSHQETGIKLTYERDLAVGKLLKEK--- 118

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +I   +          I N  ++  K    +++     + +  L   P P    
Sbjct: 119 -----GIIWNEY----------ITNGVIRGIKNRKNWKEDWYDYMDKDCLPFNPTPR-SF 162

Query: 185 TGPVTPSNIPRFFDYPF--QAIDPMFPIGE-QNALHILRKFCKEKVYYYVEQRDIPAI-- 239
              +    +   FD P      +P F  G    AL  +  F +E+V  Y      P +  
Sbjct: 163 VKYIEIEELENAFDVPSIKTVHNPNFQKGGVPTALRYMNSFFEERVQNYSNHISKPELGR 222

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
           +G S+LSPY++ G +S RQ + +  E       K +   F+    W    I +      M
Sbjct: 223 KGCSRLSPYIAWGNISIRQVYTKAWEMHQQGKFKRQISNFASRLRWQAHFIQKFEMESTM 282

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F   + + K +    +++  N+  H  +AW  G TG P++DA MR LNT G+++ R+R 
Sbjct: 283 EF---IAVNKGYRNLIQRV--NEKYH--KAWITGKTGVPLVDACMRCLNTTGYLNFRMRA 335

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +  SF    L   W+    +   Q LD +   +    Q  A  G   +   R++NP    
Sbjct: 336 LVVSFYTHHLFQPWQNCSPHLAQQFLDFEPGIHYPQIQMQA--GVTGINTLRVYNPVKNS 393

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVDHKKACHH 469
              D  GTFI+ W+PEL  +P ++IH P         L   ++  +YPLPIV+ ++A   
Sbjct: 394 YEHDADGTFIKKWVPELATIPAEFIHEPWKLTPIEQILYNFEIGKDYPLPIVNLEEARKF 453

Query: 470 TLNQYYAAKK 479
           + + +++ +K
Sbjct: 454 SSDFFWSMRK 463


>gi|330447966|ref|ZP_08311614.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492157|dbj|GAA06111.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 441

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 193/439 (43%), Gaps = 45/439 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIA----TPEQWRQHGISARQSHFIYASLL 66
           L WL  DLR+ DN+  +    ++D  +   FI     T  +++   +   +  F+  SL 
Sbjct: 6   LYWLTQDLRLHDNEIFHQVRDHADNLLCVYFIEPQWQTFNRYQLKSMGEIRHRFLLQSLQ 65

Query: 67  QVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            +  +L++ G   +V Q     +    I+       Q R+  ++ +R     E ++ + +
Sbjct: 66  TLHSNLTRFGQQLVVVQAEPLLSLPALIQ-------QHRINVIYRSRHCGWYEQQQWQYI 118

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPA 181
           ++   H    +  D   L     +  H   M   Y+ FRK + +  N+ +   +   +P 
Sbjct: 119 KQYFPHLRFVE-VDTHTLYSQQQLPFHLSDMPSGYSKFRKLIERDTNVTKPLPQPEYLPP 177

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF--CKEKVYYYVEQRDIPAI 239
                     +I R +      ++  +  GE  AL  L+++  C     Y   +  +   
Sbjct: 178 PPKMNSSDYLDIGRVYIADNSNVE--WQGGENAALMHLKQYFSCDAPANYKETRNALAGW 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY-------- 291
           + +++ SP+L+ G LS +     LK+   +  +   S  +    EL+WREF+        
Sbjct: 236 ELSTKFSPWLACGSLSAKTIMAALKD--YEQNVTANSSTYWIFFELLWREFFQWHAHVVG 293

Query: 292 RHLMAF--YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           RHL  F    +  +   F P              + W  G T +P+++A M+QLN  G+M
Sbjct: 294 RHLYRFSGVQNKRLLTSFYP-----------SRFKQWCSGSTPYPLVNAFMKQLNQTGYM 342

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            NR R I AS LV +L +DWR G  YF  QL+D D+ASN G WQ+ A  G DS    R F
Sbjct: 343 SNRGRQIVASCLVNELSLDWRYGAAYFEQQLIDHDMASNWGNWQYIAGVGTDSRDK-RWF 401

Query: 410 NPTIQGKRFDPQGTFIRHW 428
           +   Q + FDP   FIRHW
Sbjct: 402 DIEKQTRLFDPDHAFIRHW 420


>gi|94501552|ref|ZP_01308070.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
 gi|94426370|gb|EAT11360.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
          Length = 485

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 217/479 (45%), Gaps = 63/479 (13%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW + DLR+ D+ AL+ A  +     + ++I  P          R   F+Y SL  +
Sbjct: 1   MNVVWFKRDLRLHDHDALFKAI-SLGKPCLLLYILEPSLIEDTHYDDRHWRFVYESLQDL 59

Query: 69  QKSLSQKGIVFQYHQCSNFD-DSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126
            K LS  G     H+ +    ++++ L +   +  +  +F +++  I     RD+ +E  
Sbjct: 60  NKQLSPYG-----HRLTVIKGEALDVLQAIHQRHEIHTIFSHQEIGIARTFSRDRKIE-- 112

Query: 127 LQHRVICKSFDDSVL---LPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSL 177
                 CK  ++S++    P G+++              + L   L   D       RS+
Sbjct: 113 ----YWCK--NNSIVWQQSPHGAVV--------------RGLQHRLYWQDHWYNYMARSI 152

Query: 178 P-VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRD 235
           P +   +L    +  +    FD  ++  +P F  G E +A+  L  F  ++  +Y     
Sbjct: 153 PPIELNKLKSEQSCLHDVDAFDDIYKQTNPHFQYGGESSAMVTLEDFLTDRHLHYRGSIS 212

Query: 236 IPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWRE 289
            P+      S+LSPYL+ G LS R C+ + +  F     K    AFS    W    I ++
Sbjct: 213 SPSRSRHYCSRLSPYLAWGNLSLRYCYQQTQLAFAQSKGKQHLNAFSSRLHWHCHFI-QK 271

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           F       + +V  G    P+    +    +H  L  W+QG TG+P++DA +R L T G+
Sbjct: 272 FESESRMEFEAVNRGYLDFPY----DIGDSAHEKLAIWQQGKTGYPLVDACIRCLQTTGY 327

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFR 407
           ++ R+R +  SF    L + W+   EY     LD D   +    Q  A  TG +++   R
Sbjct: 328 LNFRMRAMLVSFACHYLNLHWKSVAEYLAKLFLDFDPGIHYSQIQMQAGITGTNTI---R 384

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLNYPLPIVD 462
           I+NP  Q +  DP+G FIR W PEL+++    IH+P  W    L+K   +L+YP P+V+
Sbjct: 385 IYNPVKQSQEQDPEGEFIRLWCPELSSLSNDVIHSP--WLLGPLEKQMFALDYPEPMVN 441


>gi|254506014|ref|ZP_05118159.1| cryptochrome dash [Vibrio parahaemolyticus 16]
 gi|219551237|gb|EED28217.1| cryptochrome dash [Vibrio parahaemolyticus 16]
          Length = 412

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 196/441 (44%), Gaps = 59/441 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIY 62
           +V L W  NDLR  +N  L  A +  D  V    +    ++      +H +   +  FI+
Sbjct: 4   TVGLYWFINDLRRLNNSLLDRAINEVDELVAVYCLPHVTEYLAAFSGEHNLGTHRERFIH 63

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  + +SL+  G+     +        E ++    Q+ V+ L+ +     +E     +
Sbjct: 64  QSVEDLSESLAALGVELNIVEQGTTKAVAEIIE----QRGVSHLYVSEVAGFDETVMINV 119

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--IQNLVQADLRSLPVP 180
           ++++     + +S D++ L     +     ++   +T FRK +  I  L+     +L   
Sbjct: 120 IKQKFPTLEVIQS-DNTTLFHSDQLPFPLDELPATFTQFRKQVEPIFELLYPSQDAL--- 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
             RL    TP+ +                 GE+ A+ H+   F +     Y E R+ +  
Sbjct: 176 -YRLGEIATPTGVVG---------------GERAAIQHVTWYFSQPFASSYKETRNHLEG 219

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREFY--- 291
              ++  SP+L++G +SP Q    L++       + ++GA    +  + EL+WRE++   
Sbjct: 220 ESSSTHFSPWLALGCISPAQIVALLRQ------YEQRNGANQSTYWIIFELLWREYFYWY 273

Query: 292 ----RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
               +  + ++  +   +   P+        D    Q W +G T F I+++ M QLN  G
Sbjct: 274 GRKHQQRVFYFSGLTSKQALKPF--------DDEAFQRWVKGETDFAIVNSCMNQLNETG 325

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NR R + AS L+ +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D  P  R
Sbjct: 326 FMSNRGRQLVASCLIHELGLDWRRGAAYFETQLIDYDVTSNWGNWQYLAGVGADPNPS-R 384

Query: 408 IFNPTIQGKRFDPQGTFIRHW 428
            FN   Q + +DP  +F R W
Sbjct: 385 RFNLAKQAELYDPDSSFTRRW 405


>gi|260431373|ref|ZP_05785344.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415201|gb|EEX08460.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 541

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 120/501 (23%), Positives = 203/501 (40%), Gaps = 68/501 (13%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR++D+ AL  A  +    V+ +++  PE W+Q   SARQ +F+  ++ ++
Sbjct: 38  MQVVWFKRDLRVSDHPALAQA--SEVGPVLPLYVVEPELWQQPDASARQWNFVAETIAEL 95

Query: 69  QKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  L + G  ++ +  +       IE + S  L + +  + ++ +    E   D   ++ 
Sbjct: 96  RSDLGELGQPLIVRVGE-------IEAVLSELLNRGLIDVLWSHE----ETGNDWTYQRD 144

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRL 184
            Q    C+            +    +Q + V+   +             +LPV  P    
Sbjct: 145 RQVAAWCRDH---------GVRWREVQNHGVFRGLKCRDGWAERWDRFMALPVSSPVALK 195

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                P  IP   D   +    +     G    L  L  F   +   Y  +   P ++G 
Sbjct: 196 HIDTEPGYIPTGRDLGLRDDQCVGRQAGGRAAGLDRLNSFLTRRGERYQREMSSP-LEGA 254

Query: 243 ---SQLSPYLSIGVLSPRQCWNRLKEEFVDL---------LIKPKSGAFSWLNELIW--- 287
              S+LSPYL+ G LS R+ W   + +   L          ++  SG   W    I    
Sbjct: 255 VACSRLSPYLAWGALSMREVWQATENQRRRLPPHAKDWRKSLRSFSGRLHWHCHFIQKLE 314

Query: 288 ---REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
              R  + +L   Y  +   +P  P         D+ LL AW  G TG+P +DA MR L 
Sbjct: 315 DEPRIEFENLHRLYDGL---RPRAP---------DAELLGAWSNGETGYPFLDACMRSLQ 362

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA---STGND 401
             GW++ R+R +  +     L +DWR   E+      D        G  W+     +G  
Sbjct: 363 ATGWLNFRMRAMVMATASYHLWLDWRAPGEHLARMFTD-----YEPGIHWSQVQMQSGTT 417

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPI 460
            +   RI+NP  QG   DP+G FIR WLPEL  +  Q++H P    +  D+    YP  +
Sbjct: 418 GINTVRIYNPVKQGYDQDPEGLFIRTWLPELAQIADQHVHEPWKAENAKDIVGTLYPERV 477

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
            DH  A      + +  ++ +
Sbjct: 478 FDHLAAAKAARERVWGVRRSA 498


>gi|150026080|ref|YP_001296906.1| deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772621|emb|CAL44104.1| Deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium
           psychrophilum JIP02/86]
          Length = 502

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 212/493 (43%), Gaps = 86/493 (17%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++VW + DLR TDN+AL+ A H+S   ++ +++  P          R   F+Y SLL +
Sbjct: 6   VNIVWFKRDLRFTDNEALFHA-HHSGLPLLLIYVFEPSVMNYDDSDVRHWRFVYESLLDM 64

Query: 69  QKSLS-QKGIVFQYHQCSN--FDDSIEWLDSYCL---QQRVTKLFYNRQYEINEV-RRDK 121
           Q  L      ++ +H  S   F + I+  +   +   Q+   K+ ++R  E+     ++ 
Sbjct: 65  QLKLDLVASKIYFFHNESKIIFSELIKIFNVQTIFSHQEIGNKITFDRDIEMQAFFNKNN 124

Query: 122 LLEKRLQ-HRVI---------CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           ++ K  Q H VI          K ++D +   P  I    L++  +   F +     ++ 
Sbjct: 125 IIWKEFQLHGVIRKLKSRQNWDKKWEDVMRASPRIIDLKDLKIEILSDSFYQEFKGEILN 184

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
            ++ +                     +  FQ        GE  A   L  F K++   Y 
Sbjct: 185 PEITT--------------------HNKNFQQG------GENFAWRYLDSFVKKRYVNYS 218

Query: 232 EQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           +    P +  +G S+LSPYL+ G +S R  +    + +     K K    ++++ L W  
Sbjct: 219 KHISKPLLSRKGCSRLSPYLTYGNISMRAIYQYTNQHYE--TSKNKRAILNFVSRLHW-- 274

Query: 290 FYRHLMAFYPSVC-------------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
            + H M  +   C             + KP           K+   ++AW++G TG PI+
Sbjct: 275 -HCHFMQKFEDECTMEFENANRAYDVLIKP-----------KNETYIKAWQEGKTGVPIV 322

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS-QLLDGDLASNNGGWQWA 395
           DA MR L T G+++ R+R +  SF   +L  DWR  E +F++ Q LD +   +    Q  
Sbjct: 323 DACMRCLVTTGYINFRMRAMVVSFFTFNLWQDWR--ELHFLARQFLDYEPGIHYP--QIQ 378

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND---- 451
             +G   +   RI+NP    +  DP+G FI+ WLPEL  +P   +H P    D       
Sbjct: 379 MQSGTTGINTIRIYNPIKNSEEHDPEGIFIKQWLPELAEIPLSLLHEPWKMNDMEQQFYN 438

Query: 452 --LSLNYPLPIVD 462
             +  +YP PIV+
Sbjct: 439 CKIGEDYPTPIVN 451


>gi|124003106|ref|ZP_01687957.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
 gi|123991756|gb|EAY31164.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
          Length = 545

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 211/484 (43%), Gaps = 60/484 (12%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T+M +++VW + DLR+ D+  L AA       V+ V++  P   +    + R   F+Y S
Sbjct: 35  TSM-INVVWFKRDLRLEDHAPLKAAI-EVGLPVLLVYVFEPSLQQSPDWNIRHWQFVYQS 92

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEIN-EVRRDKL 122
           +  +   L    +      C  F   +  +  Y L+  ++ K+F +++  I     RD+ 
Sbjct: 93  IEDLNFELEDYQVKLH---C--FHAEVPDVFEYILKTHQIDKVFSHQETGIRLTYDRDRQ 147

Query: 123 LEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +++  + + I  + F+ + +           Q +++   F K  +     A L+++P   
Sbjct: 148 MQQFFEQKDIEWQEFEQNGIQRGRKNRRGWAQDWQI---FMKEPLATPNLAQLKAMPYEV 204

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMF-----PIGEQNALHILRKFCKEKVYYYVEQRDI 236
                    ++    FDY       ++     P+G ++A   L+ F K+ +  Y  Q   
Sbjct: 205 ---------TDFAFLFDYVTGQKIHLYSKNYQPVGMRSAQKYLKAFGKKCIVQYTTQHKQ 255

Query: 237 PAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           PA+  Q  S LSPYL+ G LS RQ +   ++  +D    P    F         E Y H 
Sbjct: 256 PALSNQSNSHLSPYLAWGNLSVRQVYQHCQQLMID---SPHRANF---------ETYLHH 303

Query: 295 MAFYPSVCMGK-------PFIPWTE---KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           +  +   C+ K        F    E   ++E N  + LL+AWK G TGFP++DA+MR + 
Sbjct: 304 LRMHCQ-CIQKFEMEDYLEFEAGNEAYLQLEQNHKNDLLEAWKNGQTGFPLVDASMRCIR 362

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+++ ++R +  SFL   L   W  G  Y   Q LD +   +   +Q  A  G     
Sbjct: 363 QTGYLNFQMRSLIVSFLTHHLWQSWHTGVHYLGQQFLDYEPGVHFVRFQ--AQAGAVDTH 420

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH------APHSWLDKNDLSLNYPL 458
             +I NP    K+ DP+  FI+ W+PEL N+P   IH             K  +  +YP 
Sbjct: 421 KVKILNPIKVSKKCDPKAQFIKKWVPELKNIPAGLIHDLSKMTTIEQIFYKCTIGQDYPA 480

Query: 459 PIVD 462
           PI++
Sbjct: 481 PIIN 484


>gi|91223149|ref|ZP_01258415.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus
           12G01]
 gi|91191962|gb|EAS78225.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus
           12G01]
          Length = 493

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 202/451 (44%), Gaps = 42/451 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++++VWL+ DLR+TD++ L  A       V+ ++I  P        S R   F++ SL  
Sbjct: 3   TINVVWLKRDLRLTDHQPLTQALSTKHPTVL-LYIVEPLLLNNPHYSERHWRFVWQSLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSN-FDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + ++L   G     H+ +  FDD++    S   Q ++  +F +R+  +N    RD+ +  
Sbjct: 62  MDETLKAYG-----HRITVLFDDALACFQSIQAQYQINAVFSHREIGLNCTFERDRQVAA 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMY---KVYTPFRKALIQNL-VQADL-RSLPVP 180
            L  + I     D      G+++  A+      K +    +A I  + +Q DL  SL   
Sbjct: 117 WLYEQNI-----DWFEFEHGAVIRGAINRQGWDKHWDSVMRASISPIELQTDLLHSLDAE 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A+  +     S + +           M   G + A   L  F   +   Y      P   
Sbjct: 172 ALGCSFSPPSSWLSK--------CKGMQTGGSRLAWKTLEDFFHRRGRDYYRSISSPTAS 223

Query: 241 GT--SQLSPYLSIGVLSPRQCWNRLKEE-----FVDLLIKPKSGAFSWLNELIWREFYRH 293
            T  ++LSPYL+ G +S R+ +  L +      F   LI   S    W    I +    +
Sbjct: 224 RTACTRLSPYLAWGNISLREVYQYLLKHWQVAGFRRSLIA-LSSRLHWHCHFIQKFESEY 282

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            M FY   C+ + + P  ++     D   L AWK G+TG P+IDA MR L+  G+++ R+
Sbjct: 283 DMEFY---CVNRAYEPLIKQSS-TFDEEKLAAWKSGHTGVPLIDACMRCLHHTGYINFRM 338

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPT 412
           R +  SFL   + +DWR+G  +     LD +   +   +Q  A  TG +++   RI+NP 
Sbjct: 339 RAMLVSFLTHHMNMDWRVGVTHLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPI 395

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
            Q +  DP GTFI  W+PEL  VP   +  P
Sbjct: 396 KQAQEHDPNGTFIYKWVPELQMVPPPLLFEP 426


>gi|223647560|gb|ACN10538.1| Cryptochrome-1 [Salmo salar]
          Length = 643

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 132/508 (25%), Positives = 214/508 (42%), Gaps = 76/508 (14%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T  S+H  W R  LR+ DN AL  A  +SD  V  V+   P       +   +  F+   
Sbjct: 2   TKNSIH--WFRKGLRLHDNPALLEAVRDSDT-VRCVYFLDPWFAGSSNLGVNRWRFLLQC 58

Query: 65  LLQVQKSL---SQKGIVFQYHQCSNF-----DDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           L  +  SL   + +  V +    + F     D +I  L   C  +   K    R   I +
Sbjct: 59  LEDLDSSLRKLNSRLFVIRGQPANIFPRLFKDWNISQLTFECDSEPFGK---ERDAAIKK 115

Query: 117 VRRDKLLE--KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-D 173
           +  +  +E   R+ H +    +D          L+  +++   + P      Q LV +  
Sbjct: 116 LATEAGVEVVSRISHTL----YD----------LDKIIELNGGHPPLTFKHFQTLVDSMP 161

Query: 174 LRSLPVPAI------RLTGPVTPSNIPRF-------FDYPFQAIDP-MFPIGEQNALHIL 219
               PV A+      R   PV+ ++  ++         +  + + P ++P GE  AL  +
Sbjct: 162 PPDAPVEALSRASMGRCVTPVSDNHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALTRI 221

Query: 220 RKFCKEKV-------YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
            +     +       +    +   P +     LSPYL  G LS R  +++L E +  +  
Sbjct: 222 ERQLGPDLSTAWQVNFESTRKTASPLLPSPLGLSPYLRFGCLSCRLFYSKLAELYKKVKT 281

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI-----PWTEKIEWNKDSHLLQAWK 327
              S   S  ++L+WREF      FY +      F      P   +I W++++  L  W 
Sbjct: 282 N-GSPPISLYDKLLWREF------FYTAATNNPRFDKMDGNPICIRIPWDRNAEALAKWA 334

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386
           +  TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D +
Sbjct: 335 EAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWS 394

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
            N G W    S  +    +F  + P   G++ DP+G FIR +LP L ++P +YI+ P  W
Sbjct: 395 VNAGSW-LCHSCSSFFQQFFHCYCPVGFGRKIDPKGDFIRRYLPVLKDMPDKYIYDP--W 451

Query: 447 --------LDKNDLSLNYPLPIVDHKKA 466
                     K  + ++YP P+V+H +A
Sbjct: 452 NAPIEVQRAAKCVVGVDYPKPMVNHAEA 479


>gi|114768849|ref|ZP_01446475.1| deoxyribodipyrimidine photolyase [alpha proteobacterium HTCC2255]
 gi|114549766|gb|EAU52647.1| deoxyribodipyrimidine photolyase [alpha proteobacterium HTCC2255]
          Length = 519

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 122/494 (24%), Positives = 204/494 (41%), Gaps = 33/494 (6%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T  ++++VW + DLR  D+  L  A    +  ++ +++  P+ W+    S +  HFIY  
Sbjct: 4   TLDAINIVWFKRDLRTNDHAPLLNASQ-QNTPILPIYVVEPDYWKTESSSRKHWHFIYDC 62

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L+ +   L+  G           D  I+  + + +     K  Y+ +   N    ++  +
Sbjct: 63  LVDLNNELNDLGQPLIVQTGDVVDIFIQISEIFDI-----KNIYSHEETGNMWTYER--D 115

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           KR+Q  V CK         P + +   L     ++  R   +   +      +  P  + 
Sbjct: 116 KRVQ--VWCKKNAIGQKEYPSNGVVRKLSSRDDWSKIRNKRMSEKIYPKPDYIN-PIKKN 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--T 242
                P+     F  P   I  +   G   A+  L+ F  E+   Y+     P       
Sbjct: 173 VYSTIPNKDDELFGTPI--IGRVQRGGRIKAICDLKSFLNERSSNYLYHISAPGKSEKYC 230

Query: 243 SQLSPYLSIGVLSPRQCWNRLKE---EFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFY 298
           S+LS +L+ G LS R+    +K+   +F D   K      S  N  L WR  +   +   
Sbjct: 231 SRLSAHLTWGSLSVREIVQSIKKRRLQFCDDDKKIYGRNLSAFNSRLAWRCHFIQKIESQ 290

Query: 299 PSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P++   CM   F     KI+   D +   AW +G TG+P +DA MR L + GW+  R+R 
Sbjct: 291 PNIETHCMHSAFES-LRKID--PDDNKFLAWSKGNTGYPFVDACMRNLISEGWITFRMRA 347

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +  SF    L +DWR+   Y      D +   +    Q    +G   +   R++NP  Q 
Sbjct: 348 MLVSFASYQLWIDWRLSGNYLAKLFTDFEPGIHFS--QLQMQSGVTGINAMRVYNPIKQS 405

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP---HSWLDKN---DLSLNYPLPIVDHKKACHH 469
              D  G FI+ W+PEL ++P ++IH P   H+ L  N    +  +YP PIVDH+     
Sbjct: 406 IEHDINGHFIKKWVPELIDLPEKFIHEPWKYHNNLVDNCSVQIGRDYPFPIVDHEHEARI 465

Query: 470 TLNQYYAAKKQSLL 483
              +    +K  L 
Sbjct: 466 AKQKISNVRKNELF 479


>gi|149376017|ref|ZP_01893783.1| deoxyribodipyrimidine photolyase family protein [Marinobacter
           algicola DG893]
 gi|149359654|gb|EDM48112.1| deoxyribodipyrimidine photolyase family protein [Marinobacter
           algicola DG893]
          Length = 507

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 198/490 (40%), Gaps = 75/490 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLR  D++ L AA  N    VI +++   + W+    S RQ  FI   LL + +
Sbjct: 4   VVWFKRDLRTRDHEPLIAAV-NLGEPVIPIYVVEDDYWQLPDTSERQWAFIRDCLLDLDQ 62

Query: 71  SLSQKGIVFQYHQCSN-FDDSIEWLDS-------YCLQQRVTKLFYNRQYEINEVRRDKL 122
            L   G       C+    D +  L +       +C Q+   +  Y+R   +     +  
Sbjct: 63  QLKYAGNRLVV--CNGAVTDVLNQLKANHDVQRVFCHQETGGQWTYDRDRSVIHWCTENN 120

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           LE R                            + V    +   + +   ADL   PV   
Sbjct: 121 LEYR------------------------EWNQFGVVRRLKNRDVWDKAWADLMRRPVLD- 155

Query: 183 RLTGPVTPSNIPRFFD--YPFQAIDPMFPI----------GEQNALHILRKFCKEKV--Y 228
                 +P NIP       P + I P F            G      +L  F + +   Y
Sbjct: 156 ------SPENIPSAHSQATPLEGISPTFTTRDSCGDRQAGGSTKGHKLLDSFLERRCIGY 209

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLNELI 286
            Y     + A++  S+LSP+++ G +S R+ + + K      + L + +    S+ + L 
Sbjct: 210 QYNMSSPLSAVKACSRLSPHIAYGSVSLREIYQQAKITGNHRNTLPRKQKSLTSFRSRLH 269

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK----DSHLLQAWKQGYTGFPIIDAAMRQ 342
           W   +   +   P +     F     ++E  K    DS  LQ W++G TG+P++DA MR 
Sbjct: 270 WHCHFIQKLEDEPEL----EFRAMHRELEHLKSGPNDSERLQRWQEGQTGWPLVDACMRA 325

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW++ R+R +  +     L + WR    +   Q  D +   +    Q    +G   
Sbjct: 326 LQHTGWINFRMRAMLMAVASYQLWLHWRDPALHLARQFTDFEPGIHYP--QAQMQSGLTG 383

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL----DKNDLSLN-YP 457
           +   RI+NP +Q ++ DPQG FIR W+PEL  VP + IH P  WL     +     N Y 
Sbjct: 384 INALRIYNPVLQSQKLDPQGEFIRRWIPELAGVPAEMIHTP--WLLTPAQQQRFGGNTYI 441

Query: 458 LPIVDHKKAC 467
            P+ DH++A 
Sbjct: 442 APVCDHEQAA 451


>gi|126665353|ref|ZP_01736335.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
 gi|126629981|gb|EBA00597.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
          Length = 441

 Score =  124 bits (310), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 204/438 (46%), Gaps = 41/438 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHFIYAS 64
           L W   DLR+ DN AL AA  +    ++ V++  P +W + G      +   +  F++ S
Sbjct: 4   LYWFTRDLRLHDNAALLAASKSD--MLLCVYVVEP-RWFKPGPLQCKTMGHHRWRFLWQS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L+ +++SL   G          + D    + +      ++++  +RQ    E  + + L+
Sbjct: 61  LIGLERSLRALGQRLHI----AWGDPETVIPALAHGHVISRIVRSRQPGTREAVQWQTLQ 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +L    I  +  +++ L   S+L   LQ +   ++ FRK LI+         L +P ++
Sbjct: 117 DKLPK--IAFTQYETLGLFTESLLPMPLQDLPTTFSQFRK-LIEKKGDRGPSRLRIPTLK 173

Query: 184 LTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCK--EKVYYYVEQRD- 235
           +  P     +P        AI        F  GEQ  L  L+ F      +  Y E R+ 
Sbjct: 174 MLPPA--PGLPDDNRGECPAIQEPTQPQAFRGGEQAGLARLQDFLAGTHAIDTYKETRNA 231

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ SP+L+ G LS R+  + +   +       +S  + W  E++WRE++    
Sbjct: 232 LDDWNSSSKFSPWLAHGCLSAREVADSISL-YEQQHTSNESTYWLWF-EVLWREYF---- 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            ++ ++  G       + ++  + S     H  +AW +G T +P+++AAM QL   G++ 
Sbjct: 286 -YWYALRHGSELFR-RDGVQGKRQSVTFYGHRFKAWCEGNTSYPLVNAAMNQLRETGYIS 343

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R + AS  + +L +DWR G  +F  QL+D D+ASN G WQ+ A  G D     R FN
Sbjct: 344 NRSRQLVASCFINELELDWRYGAAWFEQQLIDYDVASNYGNWQYLAGVGADPRG-LRRFN 402

Query: 411 PTIQGKRFDPQGTFIRHW 428
              Q +++DP GTF+  W
Sbjct: 403 LDKQAQQYDPNGTFVERW 420


>gi|85711299|ref|ZP_01042358.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
 gi|85694800|gb|EAQ32739.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
          Length = 441

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 186/432 (43%), Gaps = 27/432 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQSHFIYAS 64
           LVW   DLR+ DN  L  A       V    I   E W +      +GIS  +  +I  +
Sbjct: 9   LVWFNLDLRLIDNLTLIRAAEQCQQLVCCFVI--DESWFKGNRYGLNGISQPRWRYIQQA 66

Query: 65  LLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           +  +  SL Q G   I+ +    +     I  L+       V  ++ +    + E RR  
Sbjct: 67  IADLAASLQQHGQQLIIRKGQPTTEISTLISTLE-------VDAVYCSDDPGVYERRRWD 119

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L KR  + +  +   +  LL    +     ++   Y+ FRK   + L +       +  
Sbjct: 120 TLVKRFPY-ITFERVSNHTLLTERELDFPLEELPATYSAFRKRF-EPLAETFPSGQALSQ 177

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-LHILRKFCKEKVYYYVEQRD-IPAI 239
           ++   P+    I      PF         GE  A  H+ + F      +Y E R+ +   
Sbjct: 178 LKALPPMPRRTIASEHT-PFVEPSGYLQGGELAAHEHLTQYFKSSAPSHYKETRNALDNF 236

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +++LS  L++G +SPRQ  + L+    +         +  + EL+WRE++   +  + 
Sbjct: 237 ADSTKLSAALALGNISPRQVIDALRN--YEATQGANESTYWIVFELMWREYFHWYLRRFQ 294

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                   I   +K   +  S    AW QG T +PI++A M QLN  G+M NR R + AS
Sbjct: 295 EKVFKFGGIQ-DKKPTTSFYSQRFAAWCQGKTPYPIVNACMHQLNQTGYMSNRGRQLVAS 353

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
            L+ +L +DWR G  YF  QL+D D+ASN G WQ+ A  G D     R FN   Q + +D
Sbjct: 354 CLIHELQLDWRYGAAYFEQQLIDYDVASNWGNWQYLAGVGADPRGS-RRFNLDKQTQTYD 412

Query: 420 PQGTFIRHWLPE 431
           P G FI+ W  E
Sbjct: 413 PNGEFIKRWHGE 424


>gi|28900058|ref|NP_799713.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308094879|ref|ZP_05892988.2| cryptochrome dash [Vibrio parahaemolyticus AN-5034]
 gi|308095330|ref|ZP_05905084.2| cryptochrome dash [Vibrio parahaemolyticus Peru-466]
 gi|308125427|ref|ZP_05775230.2| cryptochrome dash [Vibrio parahaemolyticus K5030]
 gi|81839701|sp|Q87JP5|CRYD_VIBPA RecName: Full=Cryptochrome DASH
 gi|28808341|dbj|BAC61546.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086793|gb|EFO36488.1| cryptochrome dash [Vibrio parahaemolyticus Peru-466]
 gi|308091994|gb|EFO41689.1| cryptochrome dash [Vibrio parahaemolyticus AN-5034]
 gi|308115600|gb|EFO53140.1| cryptochrome dash [Vibrio parahaemolyticus K5030]
          Length = 445

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 190/444 (42%), Gaps = 55/444 (12%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYA 63
           + L W   DLR+ DN  L  A    D  V      +   +  H      +   +  FI A
Sbjct: 5   IGLYWFTFDLRLHDNSLLVDASSFLDELVCLYCRPSVTPFLHHFAQEVTLGRARQKFIDA 64

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKL 122
           SL ++  +L Q G      +    D        Y +Q   VT L+ +     +E      
Sbjct: 65  SLCELNDALGQLG-----QRLWTLDLPPYQALKYAIQYLSVTHLYSDAMAGSDEQSILHK 119

Query: 123 LEKRLQHRVICKS-----FDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQAD 173
           L+    H VI +      FD+S L  P ++ +    + + +T FRK +    I + + A 
Sbjct: 120 LQDEYPHLVIVQHSVRSLFDESKL--PFTLPD----LPETFTQFRKCVEGIDIAHPIDAP 173

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVE 232
            R  P+P     G   P+    +FD        +F  GE + L H  R F       Y E
Sbjct: 174 SRLPPMP----KGAQLPTLSSFYFDE-----SALFSGGEWSGLAHCRRYFFSGLASSYKE 224

Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF- 290
            R+ +  +  +++ SP+L++G +SPR     LK+   +         +    EL+WRE+ 
Sbjct: 225 TRNGLDGMAYSTKFSPWLALGCVSPRMIHAMLKQ--YEQTQGANDSTYWIYFELLWREYF 282

Query: 291 ------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
                 Y+  +  +  +    P   +         +H  Q WK G T +PI++A M QLN
Sbjct: 283 YWYARCYQQRLFRFGGIRNQPPLTSFY--------AHRFQQWKNGTTPYPIVNACMHQLN 334

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+M NR R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D   
Sbjct: 335 HTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG 394

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428
             R FN   Q + +DP   FI  W
Sbjct: 395 S-RQFNLEKQTQMYDPNHEFIERW 417


>gi|307826658|gb|ADN94464.1| cryptochrome [Helicoverpa armigera]
          Length = 548

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           LSP L  G LS R  +  +++ F  +    +   S +     +LIWRE++  +    P+ 
Sbjct: 258 LSPALRFGCLSVRSFYWAVQDLFRQVHQGRLTTNSASHFITGQLIWREYFYTMSVNNPNY 317

Query: 302 --CMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
               G P    IPW      N +   LQ W +G TGFP +DAAMRQL T GW+H+  R  
Sbjct: 318 GQMAGNPICLDIPWK-----NPEGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHAARNT 372

Query: 357 TASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQ 414
            ASFL +  L + W  G  +F+  LLD D +   G W W +S+  ++ +       P   
Sbjct: 373 VASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRL 432

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLDKND-----LSLNYPLPIVDHKKACH 468
           G+R DP G ++R ++PEL  +P +YI+ P  + +D  +     +  +YP P+V+H  A  
Sbjct: 433 GQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQERATCVIGKDYPAPVVNHLVAAQ 492

Query: 469 HTLN 472
              N
Sbjct: 493 RNKN 496


>gi|329120351|ref|ZP_08249019.1| deoxyribodipyrimidine photo-lyase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462692|gb|EGF09015.1| deoxyribodipyrimidine photo-lyase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 456

 Score =  123 bits (309), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 131/471 (27%), Positives = 200/471 (42%), Gaps = 67/471 (14%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+    +LR+  N  L+A  +   A  +    A       H  + RQ +F+  +L ++  
Sbjct: 33  LLHFTRNLRLAANPLLHAVQYGIPAAAVYFLPA-------HS-NPRQMYFLSQTLAELSD 84

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ GI     + S  +     +  Y   + +T   + R  +    R   + E+ L   
Sbjct: 85  GLAEYGIPLHVFEGSPTEHLNALMARYPTARLITAQ-HIRLPDDPSCRVQYVQEEILPLP 143

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVY--------TPFRKAL--IQNLVQADLRSLPVP 180
           V   + D S  LPP  ++     + K          TP + A+  +Q  +  +LR  P P
Sbjct: 144 VRRTTLDTS--LPPDLVVYRDAWLRKAAKSAEETDSTPDKAAVRRVQQHLPPELRDAPPP 201

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                  V+   +P+               GE  A    R F   K+ YY   RD PA +
Sbjct: 202 PS-----VSAQTLPQTG-------------GETAAWTAWRAFTP-KLPYYGLMRDFPAQK 242

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLS  L  G+L  R+    ++       +     A  WL+ + + ++ R  M F   
Sbjct: 243 GTSQLSAALRFGLLPVRRLARTVQ-------VMGGESAEKWLHSVFYGDYCRRRMPFAAG 295

Query: 301 ---------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                    V +  P           + +     W++G TG P+IDAAMR L+  GWMH 
Sbjct: 296 LWAWEDGALVEIRPPAAAPAMPALSEEQAAAFDLWRRGRTGVPLIDAAMRLLDGGGWMHP 355

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLR + A+F V  L +    GE  F + L D D ++N  GWQ AA+         R+ NP
Sbjct: 356 RLRSLCAAFAVSALGIPQAAGEACFAAALTDYDYSANRVGWQTAAAA--------RMKNP 407

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIV 461
             + +  DP G FIR  LPE+ ++P   IHAPH     + +SLN YP PIV
Sbjct: 408 FAESQNLDPGGRFIRSHLPEIAHLPDNIIHAPHR--AGSGVSLNGYPAPIV 456


>gi|302915963|ref|XP_003051792.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732731|gb|EEU46079.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 639

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 143/313 (45%), Gaps = 42/313 (13%)

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPA- 238
            ++ GP     I    +  F +       GE  AL  L K   +K Y   + + +  PA 
Sbjct: 211 TKIAGPNGDFAIETMEELGFPSATTPHRGGETLALEALDKIIADKKYTAKFEKPKTSPAR 270

Query: 239 --IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLM 295
              Q T+ LSP+L  G LS R+ + R+ +E VD   K  S    S + +L++R+ Y    
Sbjct: 271 FEPQSTTLLSPFLHFGALSVREFYWRV-QEVVDAYGKGASTPPESLIGQLLFRDMYFAAQ 329

Query: 296 AFYPSVCMGK------PFIPWTEKIEWNKDSHLLQA---------------WKQGYTGFP 334
           A    V M         FIPW    + +  + L+                 WK G TGFP
Sbjct: 330 AALGDVFMQTVKNPHCRFIPWHLPSKRDPKTGLVTGEYHVDSEEADIWFKRWKTGMTGFP 389

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
            IDA MRQL   GW+H+  R   A FL +    +DW  G E F   L+D + A N G WQ
Sbjct: 390 WIDALMRQLKEEGWIHHLGRHAVACFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQ 449

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453
           W + T   S  YFR ++P   G+++D QG FIR ++PEL N+  +YI+ P          
Sbjct: 450 WLSCTAFFSQ-YFRCYSPVSFGQKWDKQGDFIRRYVPELKNMDAKYIYEP---------- 498

Query: 454 LNYPLPIVDHKKA 466
             +  P+ D KKA
Sbjct: 499 --WKAPLPDQKKA 509


>gi|332668099|ref|YP_004450887.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336913|gb|AEE54014.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 501

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 126/484 (26%), Positives = 208/484 (42%), Gaps = 32/484 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ DLR+ D+  L AA  N     + +F   P          R   F++ SL  +
Sbjct: 6   INIVWLKRDLRLRDHDPLAAAIDNG-LPTLLLFCFEPSLMACPESDVRHWRFVFESLADL 64

Query: 69  QKSLS-QKGIVFQYHQCSNFDDSIEWL-DSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           Q  L  ++  ++  HQ       +EW+ D Y +QQ    ++ + +  I     RDK ++K
Sbjct: 65  QNRLKIREKQLYAVHQ--EVITVLEWITDFYQIQQ----VYSHEEVGIKITFDRDKAVKK 118

Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183
               + I  + F  + ++         L++ +  T    A   +L +    S+ PV   +
Sbjct: 119 WCTEQGIAYQEFPQNGIIRGRKHRQGWLKLLEKSTFKASATKVDLEKLQTLSIDPVLLEK 178

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242
            T    PS I + +   FQ        GE  A    + F +E+   Y  Q   PA   T 
Sbjct: 179 FTTAPLPSVI-QSYQEGFQR------GGETYAWRYFQSFLQERSKNYNRQLSKPAGSRTS 231

Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S+LSPYL+ G +S R+    L         +     F   + L WR  +   +     V
Sbjct: 232 CSRLSPYLAFGCISAREVMQHLDAHLSQSADRWNLNNFR--SRLWWRSHFIQKLETDWRV 289

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            +  P  P   +++   D    +AW QG TGFP++DA+MR L   GW++ R+R +  SF 
Sbjct: 290 EIA-PINPVFVQLDRQMDGPWFEAWAQGKTGFPMVDASMRCLQATGWINFRMRAMLVSFA 348

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              L +DWR    +     LD +   +    Q  A  G       R++NP+ Q  + DP 
Sbjct: 349 TFVLWLDWRPVATHLARLFLDFEPGIHYPQIQMQA--GLTGYHTLRMYNPSTQVTKNDPD 406

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYY 475
           G FI+ W+PEL  VP+  +  P              +  +YP+P+VD  K      ++Y+
Sbjct: 407 GIFIKKWVPELQAVPSTLLAEPWKMTPMEQKFYHCSIGSDYPVPLVDFDKVAAQNKDRYW 466

Query: 476 AAKK 479
             ++
Sbjct: 467 QIRQ 470


>gi|325141516|gb|EGC63986.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           961-5945]
          Length = 433

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 189/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI F          S   L    ++     +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPFYTAA------SPAGLVRLAVRLNTRAVIADESHTFADKLTD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G         Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGSDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA+   G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPQPAVLSDGIFLPRNG-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR    +  E  ++        
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKNTSLMGAYLSAGCISPRLLARKSLERRLN-------- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWTDNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     + DP GTF+R  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412


>gi|85704991|ref|ZP_01036091.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
 gi|85670313|gb|EAQ25174.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
          Length = 528

 Score =  123 bits (308), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 119/503 (23%), Positives = 188/503 (37%), Gaps = 83/503 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W + DLR+ D+ AL  A       +I ++I  PE W +   S RQ  FI   L  ++ 
Sbjct: 38  ILWFKRDLRVQDHPALSHAARL--GPIIPLYIVEPEAWAEPDASERQYAFICECLESLRS 95

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF----------YNRQYEINEVRRD 120
            L+  G+           D++  L++    Q V  L           Y R  ++ E  R 
Sbjct: 96  DLAALGLSLVL----RVGDAVTVLEALRADQGVAHLVSHEETGNLWSYARDRKVAEWARG 151

Query: 121 KLLE----------KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
           + +           +RL  R   +   D V+  P  +L                 +Q   
Sbjct: 152 QGVRWHEMPQSGVVRRLSSRDAWQGARDRVMRAP--VLG---------------AVQGAR 194

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
            A + S  +P        +P  +      P +        G    +  L  F   +   Y
Sbjct: 195 GAAVASDDLP--------SPEALGLMEACPLRQKG-----GRGAGVRALTSFVSTRGESY 241

Query: 231 VEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----- 283
                 P    +  S++SP+L+ G LS       L+E        P      W       
Sbjct: 242 QRAMSSPLHGARACSRISPHLAFGTLS-------LREAVQAGAAAPTGRGPDWARSMRSF 294

Query: 284 --ELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
              L WR+ +   +   P +   C+   +     ++    D+  L AW +G TG P +DA
Sbjct: 295 QARLAWRDHFMQKLEDEPEIERRCLHPAYEGLRPRV---ADAVRLAAWSKGETGLPFVDA 351

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAAS 397
            MR L   GW++ R+R +  +     L +DWR           D +   +   W Q    
Sbjct: 352 CMRSLRATGWLNFRMRSMLMAVASYHLWLDWRSTGPVLARAFTDYEPGIH---WPQVQMQ 408

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNY 456
           +G   +   RI+NP  QG   DP G F R WLPEL +VP  Y+  P +W +    L   Y
Sbjct: 409 SGTTGMNTIRIYNPVKQGLDQDPSGEFTRRWLPELAHVPDAYLQRPWAWSEAEALLGRGY 468

Query: 457 PLPIVDHKKACHHTLNQYYAAKK 479
           P PIVD  +A        +A ++
Sbjct: 469 PAPIVDPVEAARVAREAVWACRR 491


>gi|308126141|ref|ZP_05908184.2| cryptochrome dash [Vibrio parahaemolyticus AQ4037]
 gi|308110402|gb|EFO47942.1| cryptochrome dash [Vibrio parahaemolyticus AQ4037]
          Length = 445

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 199/449 (44%), Gaps = 65/449 (14%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP--EQWRQHGISAR-QSHFIY 62
           + L W   DLR+ DN  L  A    D +++ ++     TP    + Q     R +  FI 
Sbjct: 5   IGLYWFTFDLRLHDNLLLVNASSFLD-ELVCLYCRPSVTPFLHHFAQEATLGRARQKFID 63

Query: 63  ASLLQVQKSLSQKG-----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           ASL ++  +L Q G     +    +Q   +  +I++L        VT L+ +     +E 
Sbjct: 64  ASLCELNDALGQLGQRLWTLDLPPYQALRY--AIQYLG-------VTHLYADAMAGSDEQ 114

Query: 118 RRDKLLEKRLQHRVICKS-----FDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQN 168
                L+    H VI +      FD+S L  P ++ +    + + +T FRK +    I +
Sbjct: 115 SILHKLQDEYPHLVIVQHAVRSLFDESKL--PFTLPD----LPETFTQFRKCVEGIDIAH 168

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKV 227
            + A  R  P+P          + +P    + F     +F  GE + L H  R F     
Sbjct: 169 PIDAPSRLPPMP--------KDAQLPTLSSFYFDE-SALFSGGEWSGLAHCRRYFSSGLA 219

Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             Y E R+ +  +  +++ SP+L++G +SPR  +  LK+   +         +    EL+
Sbjct: 220 SSYKETRNGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQ--YEQTQGANDSTYWIYFELL 277

Query: 287 WREF-------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           WRE+       Y+  +  +  +    P   +         +H  Q WK G T +PI++A 
Sbjct: 278 WREYFYWYARCYQQRLFRFGGIRNQPPLTSFY--------AHRFQQWKNGTTQYPIVNAC 329

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           M QLN  G+M NR R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G
Sbjct: 330 MHQLNHTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVCSNWGNWQYLAGVG 389

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
            D     R FN   Q + +DP   FI  W
Sbjct: 390 ADPRGS-RQFNLEKQTQMYDPNHEFIERW 417


>gi|297539501|ref|YP_003675270.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301]
 gi|297258848|gb|ADI30693.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301]
          Length = 528

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 212/489 (43%), Gaps = 58/489 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++VW + DLRI D+ AL+ AC     +V+ +F      W     + +   F+   L+ +
Sbjct: 5   VYIVWFKRDLRIQDHAALFEACE--LGQVLPIFTWDSSVWNGGDYATQHQMFVEECLVSL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRL 127
           +++L   G+             IE L+   +  R+  L  + +   N   + DK +    
Sbjct: 63  RRNLQTIGLSL----LEVRGGIIEVLNHIAMFYRIGGLHSHEETGNNNTYQLDKAVAS-- 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                CK+ + +    P + +   L+   ++T    A+ +  + A    LP  A   T P
Sbjct: 117 ----WCKAQNVNWHEYPHNGVVRRLKNRDIWT----AVWEKRMSAQTMPLPTQAKMATLP 168

Query: 188 --VTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
             + P+N      Y  QA  P     G + A  +L  F   +   Y      P  +    
Sbjct: 169 LDILPNNDVSHLRYT-QADKPFRQKGGREEASRVLHTFLNGRGSRYRGGISSPLSSESAG 227

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-------GAFSWLNELIWREFYRHLM 295
           S+LSPYL+ GVLS R+    L+++   +   P +       G  S+ + L W   +   +
Sbjct: 228 SRLSPYLAWGVLSMREVVQNLRQKKSSIQASPSTYPNGLLAGLASFESRLHWHCHFMQKL 287

Query: 296 AFYPSV---CMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
              P++    +   F  + ++   + +  + L AWK G TG+P++DA M  L   GW++ 
Sbjct: 288 ESEPAIEYENLHPAFNGFRDQSYASAELQNRLTAWKAGQTGWPLVDACMAMLRDTGWINF 347

Query: 352 RLR---MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA---ASTGNDSVPY 405
           R+R   M TAS+L   L + WR    +   + LD +      G  W+     +G   +  
Sbjct: 348 RMRAMLMSTASYL---LWLHWRETGLHLAREFLDYE-----PGIHWSQVQMQSGTTGINT 399

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NYP 457
            RI+NP  Q K  DP+G F+R WLP L NVP  +I  P  WL    L L        +YP
Sbjct: 400 LRIYNPVKQAKDQDPEGIFVRRWLPALRNVPNTWIFQP--WLMPESLQLEYGCRIGIDYP 457

Query: 458 LPIVDHKKA 466
            P+V+  +A
Sbjct: 458 APLVNIDQA 466


>gi|83642974|ref|YP_431409.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
 gi|83631017|gb|ABC26984.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
          Length = 491

 Score =  123 bits (308), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 208/483 (43%), Gaps = 50/483 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +VW + DLR+TD+  LY A       V  +++A PE W Q     R+  F+  +L 
Sbjct: 1   MTVRVVWFKRDLRVTDHGPLYHAARQ--GPVAPLYVAEPEYWAQPDAGERRWGFVRETLQ 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125
           ++ ++LS+ G    +      D  I  L+    +  V +L+ +++  +    RR++++  
Sbjct: 59  ELDQTLSKLGQPLWFMH----DSMINVLEYLKDRFGVFELYSHQETGVQWCNRRNQIV-- 112

Query: 126 RLQHRVICKSFDDSVLL---PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
               R  C+   + VL    P   +L  A    +    ++  + Q    +  +SLP+   
Sbjct: 113 ----REWCRR--NGVLWREWPVCGVLRRATAAERWQAAWKDFMAQTRYPSP-KSLPMLG- 164

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQ 240
             T P+ P   P                G   A   L+ F + +   Y      PA   +
Sbjct: 165 --TSPLKPEAWPETIGADPTPCVLRQAGGRAAAAQELKSFLQTRGINYFRDTHYPATSFE 222

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-------LNELIWREFYRH 293
           G S+LSPYLS GV+S R+    +++    L I     +  W       L+ L  R  Y  
Sbjct: 223 GGSRLSPYLSHGVISLREA---VQQSRRALQIYHTHRSADWVKSMTEFLSRLYLRSHYMQ 279

Query: 294 LMAFYP---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            M   P   S+ + K F    E      D    +AWK G TGFP+IDAAM+ L   GW++
Sbjct: 280 QMEDEPGMESINLHKSFNGLREH---QFDEAKFEAWKNGETGFPLIDAAMKALINYGWIN 336

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG-GWQWAASTGNDSVPYFRIF 409
            +LR +  SF    L + WR    +      D D A +     Q+A +TG       +I+
Sbjct: 337 YQLRGLLMSFAANQLWLHWREPALHMARLSTDYDPAVHFPLTQQFAGTTGMFEQ---KIY 393

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVDH 463
           NP  +  R DP G FIR     L  V   Y+HAP         +    L  +YP+PI+++
Sbjct: 394 NPVTESHRLDPAGKFIRAECSALREVSDAYLHAPWKMPHAEQIMSGCVLGQDYPMPIINN 453

Query: 464 KKA 466
           + A
Sbjct: 454 EDA 456


>gi|15641816|ref|NP_231448.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121585836|ref|ZP_01675630.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80]
 gi|147674040|ref|YP_001217353.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395]
 gi|153817785|ref|ZP_01970452.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457]
 gi|153821143|ref|ZP_01973810.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33]
 gi|227081943|ref|YP_002810494.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229508087|ref|ZP_04397592.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae BX 330286]
 gi|229511674|ref|ZP_04401153.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae B33]
 gi|229518813|ref|ZP_04408256.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae RC9]
 gi|229607648|ref|YP_002878296.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae MJ-1236]
 gi|254848903|ref|ZP_05238253.1| cryptochrome DASH [Vibrio cholerae MO10]
 gi|255745421|ref|ZP_05419370.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholera CIRS 101]
 gi|262169806|ref|ZP_06037497.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae RC27]
 gi|81858080|sp|Q9KR33|CRYD_VIBCH RecName: Full=Cryptochrome DASH
 gi|9656339|gb|AAF94962.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549974|gb|EAX59992.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80]
 gi|126511605|gb|EAZ74199.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457]
 gi|126521339|gb|EAZ78562.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33]
 gi|146315923|gb|ABQ20462.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395]
 gi|227009831|gb|ACP06043.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|227013713|gb|ACP09923.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
 gi|229343502|gb|EEO08477.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae RC9]
 gi|229351639|gb|EEO16580.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae B33]
 gi|229355592|gb|EEO20513.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae BX 330286]
 gi|229370303|gb|ACQ60726.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae MJ-1236]
 gi|254844608|gb|EET23022.1| cryptochrome DASH [Vibrio cholerae MO10]
 gi|255737251|gb|EET92647.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholera CIRS 101]
 gi|262022040|gb|EEY40750.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae RC27]
          Length = 461

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 184/430 (42%), Gaps = 27/430 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G          +    + L     Q  +T ++ +     +E +   
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQAIA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180
            + +      I +    S+L  P   L  AL+ +   +T FRK      V+    S P+ 
Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETISLSAPMG 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
              +  P+         D   +     F  GEQ  L H    F       Y E R+ +  
Sbjct: 172 YPHVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYKETRNGLDG 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      Y
Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR R + A
Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   +
Sbjct: 349 SCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 407

Query: 419 DPQGTFIRHW 428
           DP+G F+  W
Sbjct: 408 DPKGEFVAKW 417


>gi|254805669|ref|YP_003083890.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha14]
 gi|254669211|emb|CBA08013.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha14]
          Length = 433

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 129/469 (27%), Positives = 192/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E       + R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G   +     Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   Y             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQYAD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     R DP GTFI+  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412


>gi|254423250|ref|ZP_05036968.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC
           7335]
 gi|196190739|gb|EDX85703.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC
           7335]
          Length = 527

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 202/487 (41%), Gaps = 48/487 (9%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W + D R+ D++ L  A       V+ +++  P+ W     S RQ  F+   + +  ++
Sbjct: 1   MWFKKDFRLFDHRCLTFAAQK--GPVLPLYVVEPDYWALEDTSYRQYLFLKGCVEETIEA 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRLQHR 130
           L + G            D +E L          +L+ +++   N   +RDK + K  Q  
Sbjct: 59  LEELGGSMAIAS----GDVVEVLSRLQKTYGNIELWAHQETGNNWTFQRDKAVRKWCQQA 114

Query: 131 VICKSFDDSVLLPPGSILNH---ALQMYKVYTPFRKAL---IQNLVQADLRSLPVPAIRL 184
            +         +  GS +N    A Q   +      +L   I  +  ++ R++P P +  
Sbjct: 115 GVAFHEPLQFGVWRGSKINRDHWAKQWDSLMAEPIASLPESISFVAHSEDRTMPSPEV-- 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGT 242
                              I  + P G   AL +L  F  E+   Y      P     G 
Sbjct: 173 ------------LGLKHDGITALQPPGRNAALQVLSSFLYERGERYRTDMSSPVTGESGC 220

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-------LNELIWREFYRHLM 295
           S+LSPYL+ G +S R+ +   ++   ++   PK+   +W       +  L W   +   +
Sbjct: 221 SRLSPYLAYGAISMRETYQATQKRIAEVAAMPKAERGTWAGSLSSFVGRLHWHCHFTQKL 280

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P +        +T   +    +  L+A+ +G TG+P +DA MR L   GW++ R+R 
Sbjct: 281 ELEPELEWLPMARAYTGIRDDGDHAIKLRAFAEGQTGYPFVDACMRYLRATGWINFRMRA 340

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS---TGNDSVPYFRIFNPT 412
           +  SF   DL + W+   +       D        G  W  S   +G   +   RI++P 
Sbjct: 341 MLMSFASYDLWLPWQKSGDVLARLFTD-----YEPGIHWPQSQMQSGVTGINAIRIYSPI 395

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            QG   D +GTF R W+PEL  +P + +  P  WL + +LS  YP PIV+HK+A     +
Sbjct: 396 KQGLDQDIEGTFTRQWVPELAALPDEILQTP--WLLEGELS--YPPPIVEHKEAAALAKS 451

Query: 473 QYYAAKK 479
           + +A KK
Sbjct: 452 RLWAIKK 458


>gi|317036499|ref|XP_001397458.2| DNA photolyase [Aspergillus niger CBS 513.88]
          Length = 641

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 143/294 (48%), Gaps = 36/294 (12%)

Query: 184 LTGPVTPSNIPRFFDY---PFQAIDPMFPIGEQNALHILRKFCKEKVYY---YVEQRDIP 237
           + GP    +IP   +    P QA  P    GE  AL +L  + ++   Y   + + +  P
Sbjct: 224 IAGPKGDFSIPTLDELSIDPSQATSPHHG-GESIALEMLTTYLQQNEDYIATFEKPKTSP 282

Query: 238 AI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFV--DLLIKPKSGAFSWL-NELIWRE-F 290
           A    Q T+ LSP+L  G LS R+ W+ +++     +   KP S   + L  +L++RE F
Sbjct: 283 AAFHPQATTLLSPHLHFGSLSVRKFWHDVQDTLQQRESAHKPTSDLPTNLPGQLLFREMF 342

Query: 291 YRHLMAFYPSVCMGKP-----FIPWTEKIEWNKDSHLL---------------QAWKQGY 330
           +    A  P     +      F+PW  +   +K++ L+               + WK+G 
Sbjct: 343 FAAQAALGPVYAQTRGNKIVRFVPWHLQSNHDKETGLVDRTYTVDDEQAEVWFRRWKEGR 402

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNN 389
           TGFP IDA MRQL   GW+H+  R   A FL +    V W  G E F   L+D + ASN 
Sbjct: 403 TGFPWIDALMRQLKNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNV 462

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           G W W + T      Y R ++P   GK++DP+G FIRH++PEL +   +YI+ P
Sbjct: 463 GNWMWLSCTAF-FTQYNRCYSPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEP 515


>gi|240116558|ref|ZP_04730620.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           PID18]
 gi|260439681|ref|ZP_05793497.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           DGI2]
 gi|268602227|ref|ZP_06136394.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18]
 gi|291042923|ref|ZP_06568664.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2]
 gi|268586358|gb|EEZ51034.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18]
 gi|291013357|gb|EFE05323.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2]
          Length = 432

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 189/463 (40%), Gaps = 79/463 (17%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA     + VI ++I   E       + R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+++GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLARRGIPLYTAA------SPAGLVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSVL----LPPGSILNHA---------LQMYKVYTPFRKAL 165
             L   L    I  +F  D SV     L PG+   H          L  +    P    L
Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPGNGTAHTDFNRYREVWLDRFSKQPPAGSDL 176

Query: 166 IQNLVQADLRSLPVP--AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                Q    +LP P  A    G   P N                  GE  A    R+F 
Sbjct: 177 FAAYRQPFPENLPAPPPAALSDGIFLPQNG-----------------GETAAWRQWRRFL 219

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           ++   Y V  +D P+ + TS +  YLS+G +SPR     L  E ++  +       +W +
Sbjct: 220 EQAASYSV-LKDFPSRKNTSLMGAYLSVGCISPRL----LARESLERRLN------AWAD 268

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQ 342
            +I R+F+  L   +             +  + N +  L L  W+QG TG PIIDAAMR 
Sbjct: 269 NIIRRDFFLQLALQHAD----------DDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRC 318

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AAS     
Sbjct: 319 LHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS----- 373

Query: 403 VPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
               R   P I     R DP GTFI+  +PEL ++    +H P
Sbjct: 374 ----RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412


>gi|257373039|ref|YP_003175813.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
           12286]
 gi|257167763|gb|ACV49455.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
           12286]
          Length = 526

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 140/299 (46%), Gaps = 17/299 (5%)

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241
           L G V+ ++I R +D    A   + P G       LR+F  + +  Y      P  A  G
Sbjct: 180 LPGTVSVADIERTYDV-HAAKTTVPPGGRAAGARRLRQFVAD-IEQYPGNISAPTDARTG 237

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSP+L  G LS R+ +  + +        P +G   +++ L W + Y   +  +   
Sbjct: 238 TSGLSPHLRFGSLSVREVYRYVMDN-----APPCTGREMFVSRLYWNKHYHQKLEDWSGW 292

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                          + D  L+ AWK+G TGFP++DA+MR L   GW++ R+R + AS  
Sbjct: 293 TTTAVNPAMRGCRAESHDPELVTAWKRGTTGFPMVDASMRCLVETGWLNFRMRAMCASVF 352

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
                  W+IG +++   L+D D A N   WQ  A T   ++   RI+NP  Q +  DP 
Sbjct: 353 ADLFQQPWQIGADFYHYHLIDADPAINYTQWQSQAGTVGTNL--MRIYNPIKQVRDNDPD 410

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           GTF+  ++PEL  +P +Y+  P             ++  +YP P+V+++ A    + +Y
Sbjct: 411 GTFVSTYVPELAPLPAEYLPRPEKTPLHVQEACGVEIGTDYPYPVVEYEAARQRAIERY 469


>gi|87303611|ref|ZP_01086390.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
 gi|87281835|gb|EAQ73799.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
          Length = 508

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 124/502 (24%), Positives = 198/502 (39%), Gaps = 78/502 (15%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V +VW + DLR+ D++ L  A  +    V+ + +  PE WRQ   SARQ  F   SL  +
Sbjct: 4   VQVVWFKRDLRVADHQPLLQA--SFLGPVLPLMVVEPELWRQSDASARQWDFCAESLEDL 61

Query: 69  QKSLSQKG-----------IVFQYHQC--------SNFDDSIEWLDSYCLQQRVTKLFYN 109
           +++L+  G            V +  +C        S+ +    W  +Y   +RV +   +
Sbjct: 62  RRALAGLGQPLVVRIGTVEEVLERARCRFGIAGLWSHQETGNGW--TYARDRRVARWAKS 119

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
                 E+    ++ +RL  R       ++ +  P      ALQ      P     I + 
Sbjct: 120 HSIPWIEIPSFGVI-RRLGSRNGWARRWEARMAEPMVPPPEALQPLAGLDP---GAIPSA 175

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            +  L   P P  ++ G                          Q    +L  F   +   
Sbjct: 176 SELGLAPDPCPGRQVGG-------------------------RQQGQAVLESFLNGRGAR 210

Query: 230 YVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
           Y  +   P  A +  S+LSP+L+ G LS R        E V L  +  +    +   L W
Sbjct: 211 YHRELSSPRTAFESCSRLSPHLAWGTLSMR--------EVVQLSRRRGAAPVGFEARLHW 262

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
              +   +   P +   +   P T  +  + D   L AW +G TG P +DA MR L   G
Sbjct: 263 HCHFIQKLESQPDLEF-RELHPLTAGLR-SSDPERLAAWAEGRTGLPFVDACMRALIATG 320

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA---ASTGNDSVP 404
           W++ R+R +  S     L + WR    +     +D        G  W+     +G   + 
Sbjct: 321 WINFRMRAMLMSVASYHLWLPWRESGLHLARLFVD-----YEPGIHWSQCQMQSGTTGIN 375

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458
             RI+NP  QG+  DP G FIR WLPEL  VP  ++H P +            L L+YPL
Sbjct: 376 TIRIYNPIKQGQDHDPGGDFIRQWLPELAAVPAVHLHEPWTMAVITQQRVGCVLGLHYPL 435

Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480
           PIV+  +A      + +A +++
Sbjct: 436 PIVEPNQAAREARVRIWAQRQE 457


>gi|308049734|ref|YP_003913300.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Ferrimonas balearica DSM 9799]
 gi|307631924|gb|ADN76226.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Ferrimonas balearica DSM 9799]
          Length = 435

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 192/442 (43%), Gaps = 49/442 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFI 61
           M   L+W R+DLR+ DN AL  A    +A ++ ++   P     + W+   +      FI
Sbjct: 1   MKRALLWFRHDLRLDDNPALLRAAQAKEA-LLCLYCIEPRWFVADNWQSRRVGDHPWRFI 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SLL +   L   G            D    +        + KL     +   E R+  
Sbjct: 60  SESLLDLANRLEALGQQL----VIRIGDPNTLIPGLMRNHWIDKLICTAPFGEEERRQYL 115

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L++ + +HR  C+ +    L     +     ++   ++ FR+  +Q L   + R L  P
Sbjct: 116 ALKQEVGEHR--CEVWQSHTLFTLEQLPFALDELPPTFSQFRRR-VQRL---EWRPLYPP 169

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-LHILRKFCKEKVYYYVEQRD-IPA 238
              L  P+  ++            +P +  G+  A  H+          +Y + R+ +  
Sbjct: 170 VTELPKPLALTS--ETPPPVSTPPNPQYQGGQTAAEAHLAHYLAGAAPKHYKQTRNALDD 227

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLN-ELIWREFYR-- 292
              +++LSP+L+ G LS R    +L+        + + GA     W+  EL+WRE+++  
Sbjct: 228 WSSSTKLSPWLAQGCLSARTAVAQLEA------YEAQHGANESTEWIQVELLWREYFQWL 281

Query: 293 ------HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
                  L AF  +  + +P   + E+            W QG T +PI++AAM QLN  
Sbjct: 282 ALAHGHRLFAFTGTSGVRRPCCFYPERFA---------RWCQGQTPYPIVNAAMNQLNAT 332

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G++ NR R + AS LV +L +DWR G  YF  QL+D D+A N G WQ+ A  G D   + 
Sbjct: 333 GFLSNRARQLVASALVHELGLDWRYGAAYFQQQLIDHDVACNYGNWQYLAGVGADPRGW- 391

Query: 407 RIFNPTIQGKRFDPQGTFIRHW 428
           R F+   Q   +DP G F+R W
Sbjct: 392 RHFDLDKQTALYDPDGAFVRQW 413


>gi|229523842|ref|ZP_04413247.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae bv. albensis VL426]
 gi|229337423|gb|EEO02440.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae bv. albensis VL426]
          Length = 461

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 183/430 (42%), Gaps = 27/430 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q   S  +  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQ--QTQWSEAKKWFL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G          +    + L     Q  +T ++ +     +E +   
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQAIA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180
            + +      I +    S+L  P   L  AL+ +   +T FRK      V+    S P+ 
Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
             R+  P+         D   +     F  GEQ  L H    F       Y E R+ +  
Sbjct: 172 YPRVLPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKETRNGLDG 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      Y
Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR R + A
Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGVTPFPIVNACMRQLNQTGYMSNRGRQLVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   +
Sbjct: 349 SCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLAKQTHTY 407

Query: 419 DPQGTFIRHW 428
           DP+G F+  W
Sbjct: 408 DPKGEFVAKW 417


>gi|163803660|ref|ZP_02197523.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
 gi|159172532|gb|EDP57394.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
          Length = 446

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 138/493 (27%), Positives = 210/493 (42%), Gaps = 88/493 (17%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAV--------FIATPEQWRQHGISARQSHF 60
           + L W  N+LRI DN  L A    + +++I +        F+    Q  Q G    +  F
Sbjct: 5   IGLYWFTNELRIHDN-PLLAEVDKAVSELICIYCYPKLPPFLTHFAQEAQFG--QNKLRF 61

Query: 61  IYASLLQVQKSLSQKGIVFQYHQC---SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           +  SL  +  SL+ +    Q            +IE LD       VT L+ +    ++E 
Sbjct: 62  LDESLHCLNLSLNARNQRLQVVDLLPYQAIKHAIEKLD-------VTHLYCDAFSGVDEQ 114

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLP---PGSILNHALQMYKVYTPFRKALIQNLVQ--- 171
                +     H  IC+    S+      P S+ N    +   +T FRK + +  V    
Sbjct: 115 DVIDKIRSDFPHLTICQREVRSLFALDDLPFSLEN----LPGTFTKFRKLVEKLPVSKPV 170

Query: 172 ADLRSLP-------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFC 223
           A + SLP       +P +RL G                    +F  GEQ  L H  + F 
Sbjct: 171 ATVSSLPPIPEGLALPTLRLIG---------------DGKSYLFNGGEQAGLEHCQQYFS 215

Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQ-CWNRLKEEFVDLLIKPKSGAFSW 281
                 Y + R+ +  ++ +++ SP+L+ G LSP+  C    + E V+      + +  W
Sbjct: 216 SISASDYKQTRNGLDGMEYSTKFSPWLAHGCLSPKVICAMLSRYEHVN----GANDSTYW 271

Query: 282 LN-ELIWREF-------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
           +  EL+WRE+       Y+H +  +  +    P   +          H  Q WKQG T F
Sbjct: 272 IYFELLWREYFYWYARKYKHQLFRFGGIRNQVPLTSFY--------GHRFQQWKQGETPF 323

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           PI++A M QLN  G+M NR R + AS LV +L +DWR G  YF SQL+D D+ASN G WQ
Sbjct: 324 PIVNACMHQLNETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLIDYDVASNWGNWQ 383

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453
           + A  G D     R FN   Q + +DP   FI  W            H   + LD  D+ 
Sbjct: 384 YLAGVGADPRGA-RQFNLKKQTEIYDPNMAFINRWQG----------HCVDAHLDSVDM- 431

Query: 454 LNYPLPIVDHKKA 466
           +++P+ +  H K 
Sbjct: 432 VDWPIMMDSHGKT 444


>gi|254489917|ref|ZP_05103112.1| cryptochrome, DASH family [Methylophaga thiooxidans DMS010]
 gi|224465002|gb|EEF81256.1| cryptochrome, DASH family [Methylophaga thiooxydans DMS010]
          Length = 441

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 196/444 (44%), Gaps = 40/444 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISARQSHFIYASL 65
           L W  NDLR+ DN AL  A  N D ++I +F        P  +    +  ++  F+  SL
Sbjct: 6   LFWFNNDLRVHDNPALLEASLNCD-RLICLFCYDTFWDKPTGFNAKPLGDKRRQFLLESL 64

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             +Q +L  +G   IV +        D +  +     +  V  ++ +    + E R+ + 
Sbjct: 65  NDLQHTLEARGQQLIVMK-------GDPVAIISELLSKYHVNHVYRSYHVGVYENRQWQH 117

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLP 178
           L      RV   S+    L     +      +   ++ FRK +    I   VQ   ++L 
Sbjct: 118 LRADFP-RVQFDSYWTHSLFQQRQLPFDLTSLPDTFSQFRKIVESLPIDKPVQMP-KTLA 175

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDI 236
           VP   L     P  +P      ++     F  GE+ A+  +  +        Y + + D+
Sbjct: 176 VPVSELHEDTLP--LP-----TYRNSQDHFTGGEKAAIEHMEAYFSSDYPAQYKLLRNDL 228

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +++ S +L+ G LS ++   +L++   +         +    EL+WRE+++   A
Sbjct: 229 DHWSHSTKFSAWLANGSLSVKRLLQQLRQ--FEKTHTANESTYWIFFELLWREYFQ-WYA 285

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           F     + +P     +KI         Q W  G T +P+++A M+QLN  G+M NR R I
Sbjct: 286 FRYRHKLFRPQGLGKKKITCCFYPERYQKWAHGNTPYPLVNALMKQLNDTGYMSNRGRQI 345

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS  + +L +DWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   Q +
Sbjct: 346 VASCFINELELDWRFGAAYFEQQLIDYDVAANWGNWQYIAGVGADPRG-GRHFNIDKQQR 404

Query: 417 RFDPQGTFIRHW-----LPELNNV 435
           ++DPQ TFI+ W      P L++V
Sbjct: 405 QYDPQQTFIQKWKGQVTAPRLDSV 428


>gi|261211882|ref|ZP_05926169.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
           RC341]
 gi|260839232|gb|EEX65864.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
           RC341]
          Length = 461

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 187/435 (42%), Gaps = 37/435 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--FL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G          +    + L     Q  +T ++ +     +E +   
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQAIA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180
            + +      I +    S+L  P   L  AL+ +   +T FRK       Q +  SL  P
Sbjct: 119 RIHQDFSSVHIHQQALRSLLSEPQ--LPFALEALPSTFTQFRK-------QVETLSLSAP 169

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAI--DP---MFPIGEQNAL-HILRKFCKEKVYYYVEQR 234
              +  P     I + +  P   I  +P    F  GEQ  L H    F       Y E R
Sbjct: 170 ---MGYPRVLPPIEQGWQLPLMGIVTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKETR 226

Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + +  +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++  
Sbjct: 227 NGLDGMDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYW 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               Y +       I   + +        LQ WK G T  PI++A MRQLN  G+M NR 
Sbjct: 285 YARRYGAKLFHFSGIGEKQPLTSFYAQRFLQ-WKHGETPVPIVNACMRQLNQTGYMSNRG 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 344 RQLVASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRDS-RQFNLAK 402

Query: 414 QGKRFDPQGTFIRHW 428
           Q   +DP+G F+  W
Sbjct: 403 QAHTYDPKGEFVAKW 417


>gi|46124775|ref|XP_386941.1| hypothetical protein FG06765.1 [Gibberella zeae PH-1]
          Length = 685

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/283 (32%), Positives = 136/283 (48%), Gaps = 41/283 (14%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQR--DIPA---IQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           GE  AL  L +   +K Y    Q+    PA    Q T+ LSP+L  G LS R+ + R+K+
Sbjct: 292 GETLALKALDEIIADKKYTATFQKPKTSPAQFEPQATTLLSPHLHFGSLSVREFYWRVKD 351

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFY---RHLMAFYPSVCMGKP---FIPWTEKIEWNKD 319
             VD      S   S + +L++R+ Y   +  + +  S     P   FIPW    + + +
Sbjct: 352 -VVDSYKGASSPPESLIGQLLFRDMYFAAQAALGYVFSQTANNPYCRFIPWHLPSKRDPE 410

Query: 320 SHLLQA---------------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
           + L+                 WK G TGFP IDA MRQL   GW+H+  R   A FL + 
Sbjct: 411 TGLVTGEYHVDSEEADIWFKRWKAGMTGFPWIDALMRQLKDEGWIHHLGRHAVACFLTRG 470

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
              +DW  G E F   L+D + A N G WQW + +   S  YFR ++P   G+++D +G 
Sbjct: 471 GCYIDWERGCEVFEEWLIDHEPACNVGNWQWLSCSAFFS-QYFRCYSPVAFGQKWDKKGE 529

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           FIR ++PEL N+  +YI+ P            +  P+ D KKA
Sbjct: 530 FIRRYVPELKNMDAKYIYEP------------WKAPLTDQKKA 560


>gi|310791567|gb|EFQ27094.1| DNA photolyase [Glomerella graminicola M1.001]
          Length = 628

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 139/284 (48%), Gaps = 42/284 (14%)

Query: 211 GEQNALHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKE 265
           GE  AL +L +   +K Y   + + +  PA    Q T+ +SP+L  G LS R+ + R++ 
Sbjct: 241 GETRALGMLEEILADKKYTATFEKPKTSPAAFEPQSTTFMSPFLHFGALSVREFYWRVRA 300

Query: 266 EFVDLLIKPKSGA-FSWLNELIWREFY---RHLMAFYPSVCMGKP---FIPW--TEKI-- 314
             VD   K  S    S L +L++R+ Y      + +  +     P   FIPW    K+  
Sbjct: 301 -VVDAYGKGASKVPESLLGQLLFRDMYFAAHAALGYSFTQTANNPYCRFIPWHLPSKVDA 359

Query: 315 -------EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                  E++ DS       + WK G TGFP IDA MRQL   GW+H+  R   A FL +
Sbjct: 360 KTGLVTGEYHVDSTQADEWFRRWKYGVTGFPWIDALMRQLREEGWIHHLGRHSVACFLTR 419

Query: 364 D-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
               +DW  G E F   LLD + A N G WQW + T   S  YFR ++P   G+++D QG
Sbjct: 420 GGCYIDWERGCEVFEEWLLDHEPACNAGNWQWLSCTAFFSQ-YFRCYSPVSFGQKWDKQG 478

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
            ++R W+PEL ++  +YI+ P            +  P+ D KKA
Sbjct: 479 AYVRRWVPELKDLDAKYIYEP------------WKAPLPDQKKA 510


>gi|261378496|ref|ZP_05983069.1| deoxyribodopyrimidine photolyase [Neisseria cinerea ATCC 14685]
 gi|269145039|gb|EEZ71457.1| deoxyribodopyrimidine photolyase [Neisseria cinerea ATCC 14685]
          Length = 430

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 134/453 (29%), Positives = 189/453 (41%), Gaps = 62/453 (13%)

Query: 3   ATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           AT A +++ LVW R +LRI DN AL AA     + +I ++I   E    H     ++ F 
Sbjct: 7   ATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIWIEDTETGNLH-----RTAFY 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S  ++ + L+  GI       S+       L    +   V  +  +      E   D 
Sbjct: 61  RQSAAELAQVLAGHGIPLYTAASSS------GLIRLAVGSSVRTVIADASCTFAEKLTDN 114

Query: 122 LLEKRLQHRVICKSF--DDSVL----LPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
            L   L    I  +F  D SV     LPP +   H       +  +RKA +      D  
Sbjct: 115 ALWHELDKHSIRLTFVNDRSVFDQTDLPPDNGTAH-----TDFNRYRKAWL------DRF 163

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAI--DPMFPI---GEQNALHILRKFCKEKVYYY 230
           S   PA            P     P  A   D +FPI   G   A    + F K+  +Y 
Sbjct: 164 SKHPPADSDIFATYRQPFPENLSAPQPAALSDGIFPIRHGGSSAAWKQWQTFLKQADFYD 223

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           V  +D P+ + TS +S YL+ G LSPR     L  E +   +       SW + LI R+F
Sbjct: 224 V-LKDFPSRKHTSLMSAYLNAGCLSPRL----LAREGIGYRLD------SWTDNLIRRDF 272

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  L A   +        P        +++  L  W+QG TG PIIDA+MR L   G +H
Sbjct: 273 FLQL-ALQHADDASSDVNP--------ENTRYLALWQQGQTGIPIIDASMRCLYKTGGLH 323

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
             LR + A FL   L V    GE +F  QL D D A N G W+ A+S    + P     +
Sbjct: 324 PVLRRLCADFLCHTLRVPRHEGEAWFARQLTDFDAAINQGNWRLASS--QHTYP-----D 376

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
                 + DP GTF+R  +PEL ++P   IH P
Sbjct: 377 IAAAAHKTDPDGTFVRRHIPELAHLPAAVIHTP 409


>gi|254227310|ref|ZP_04920742.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|262396423|ref|YP_003288276.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio sp. Ex25]
 gi|151939922|gb|EDN58748.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|262340017|gb|ACY53811.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio sp. Ex25]
          Length = 493

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 124/492 (25%), Positives = 214/492 (43%), Gaps = 42/492 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++++VWL+ DLR+TD++ L  A  +S    + ++I  P        S R   F++ SL  
Sbjct: 3   TINVVWLKRDLRLTDHQPLTQAL-SSKHPTVLLYIVEPLLLNNPHYSERHWRFVWQSLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSN-FDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + ++L   G     H+ +  F D++    S  +Q ++  +F +++  +N    RDK +  
Sbjct: 62  MNETLKAYG-----HRITVLFGDALACFQSIQMQYQINAVFSHQEIGLNCTFERDKQIAD 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L  + I   F+       G+++  A         +   +  ++   DL++       L 
Sbjct: 117 WLHEQNIT-WFE----FEHGAVIRGAKDRQGWDKHWDLVMRSSISPLDLQT------NLL 165

Query: 186 GPVTPSNIPRFFDYP---FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             +   ++   F  P         M   G Q A   L  F   +   Y      P    T
Sbjct: 166 HSLDAESLGCAFSPPSSWLSKCKGMQTGGSQLAWKTLEDFFNRRGRDYYRSISSPTASRT 225

Query: 243 --SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMA 296
             ++LSPYL+ G +S R+ +  L + +  +  +    A S    W    I +    + M 
Sbjct: 226 ACTRLSPYLAWGNISLREVYQYLLKHWQVVGFRRSLIALSSRLHWHCHFIQKFESEYDME 285

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           FY   C+ + +    ++     D   L AWK GYTG P+IDA MR L+  G+++ R+R +
Sbjct: 286 FY---CVNRAYESLIKQSS-TFDEEKLAAWKSGYTGIPLIDACMRCLHQTGYINFRMRAM 341

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQG 415
             SFL   + +DWR G  +     LD +   +   +Q  A  TG +++   RI+NP  Q 
Sbjct: 342 LVSFLTHHMNMDWRTGVTHLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPVKQA 398

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHH 469
           +  DP G FI  W+PEL  VPT  +  P +      +  +      Y  PIVD   A   
Sbjct: 399 QEHDPDGAFIYKWVPELQMVPTPLLFEPWTMTQMETVMYHLKPDSRYLAPIVDLNSAAKD 458

Query: 470 TLNQYYAAKKQS 481
              + +A +K++
Sbjct: 459 ARERLWAWRKRA 470


>gi|289804363|ref|ZP_06534992.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 94

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/92 (59%), Positives = 67/92 (72%)

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           NNGGWQWAASTG D+ PYFRIFNPT Q +RFD  G FIR WLP L ++P + IH P  W 
Sbjct: 1   NNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWA 60

Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +K  + L+YP PIV+HK+A   TL+ Y AA+K
Sbjct: 61  EKAGVVLDYPRPIVEHKQARIATLSAYEAARK 92


>gi|90415708|ref|ZP_01223642.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2207]
 gi|90333031|gb|EAS48201.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2207]
          Length = 447

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 203/455 (44%), Gaps = 37/455 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA----TPEQWRQHG-ISARQSHFIYA 63
           V L W  +DLR+ DN AL  A    D K+I ++ A    T   W+Q   +S R+  F++ 
Sbjct: 4   VGLFWFNHDLRMDDNAALVLAAAEVD-KLICLYCADTTNTGPGWQQPAKLSPRRREFLFE 62

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  ++  LSQ G              +E +        V+ L+        E R    L
Sbjct: 63  SLQDLETQLSQYGQKL----VVRIQPPLEAIAQLITVHNVSHLYSANHVGSYENRIWNTL 118

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-I 182
            KR       +S   + L  P  +     ++   ++ FR+ LI+ +    + S P+ A  
Sbjct: 119 RKRYPMLEFNQSHTHT-LFAPSQLPFTIDKLPASFSKFRR-LIEKMDLDSVISAPLDAPE 176

Query: 183 RLTGPVTPSNI---PRFFDYPFQAID----PMFPIGEQNA--LHILRKFCKEKVYYYVEQ 233
           +L  P + ++I   P + D+    +D    P    G  +A   H+   F K+    Y + 
Sbjct: 177 KLPPPASVADIAWQPLWRDHYSSNLDGDDSPALFKGGASAGEEHLKGYFAKDLASSYKQT 236

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY- 291
           R+ +  +  +++ SP+L+ G LSPR+   +L+E   +         +    EL+WRE++ 
Sbjct: 237 RNGLDGMDYSTKFSPWLANGTLSPRRIVQQLQE--YEARAGANDSTYWIFFELLWREYFQ 294

Query: 292 ----RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
               RH    Y    + +   P T            + W  G T + II+A M+QLNT G
Sbjct: 295 WYGHRHQQQLYAFTGIAQS-APTTSFY-----PERFKKWCAGNTPYAIINACMKQLNTTG 348

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           ++ NR R + AS  V +L +DWR G  Y   QL+D D+ASN G WQ+ A  G D   + R
Sbjct: 349 YLSNRGRQLVASCFVHELGLDWRHGAAYMEQQLVDYDVASNWGNWQYLAGVGADPRGH-R 407

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            F+   Q + +DP+  F++ W  +    P   + A
Sbjct: 408 RFDLKKQAQIYDPKNQFVQRWAGKQTLQPLDSVDA 442


>gi|312371404|gb|EFR19605.1| hypothetical protein AND_22153 [Anopheles darlingi]
          Length = 608

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 135/523 (25%), Positives = 213/523 (40%), Gaps = 102/523 (19%)

Query: 10  HLVWLRNDLRITDN----KALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYA 63
           +++W R+ LR+ DN    +AL + C +S+   K+  VFI   E      +   +  F+  
Sbjct: 66  NILWFRHGLRLHDNPSLLEALKSDCQSSNEPVKLFPVFIFDGESAGTRVVGYNRMKFLLE 125

Query: 64  SLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           SL  + +   + G   +VF+        DS   L     +  + KL + +  E     RD
Sbjct: 126 SLADLDRQFRELGGQLLVFR-------GDSETVLRRLFEELNIKKLCFEQDCEPIWRERD 178

Query: 121 KLLEKRLQHRVICKSFD--------------DSVLLPPGSILNHALQMYK-----VYTPF 161
           + + K      +C++ D              + V+   G I     QM+      +  P 
Sbjct: 179 ERVTK------LCETMDVKCVENVSHTLWNPNEVIQTNGDIPPLTYQMFLHTVDIIGEPP 232

Query: 162 RKALIQNLVQADLRSLP--------------VPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207
           R     +    +   +P              +P     G     N     D  FQ     
Sbjct: 233 RPVGAPDFEFIEFGRIPAILASELKLYQQQHMPGPEEFGLTYDGNA----DIAFQK---- 284

Query: 208 FPIGEQNALHILRKFCKE-----KVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWN 261
           +  GE  AL  L    K+     +  YY+  +  P I G  + +S  L  G LS R  + 
Sbjct: 285 WIGGETRALESLGARLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYW 344

Query: 262 RLKEEFVDLLIKPKSGAFSW------LNELIWREFYRHLMAFYP--------SVCMGKPF 307
            + + F  +     S  F          +LIWRE++  +    P         +C+    
Sbjct: 345 CVHDLFAKV---QASSQFKCPIGQHITGQLIWREYFYTMSVRNPHYGEMDRNPICLN--- 398

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366
           IPW E ++   DS  L  WK+G TGFP+IDAAMRQL   GW+H+ LR ITA+FL +  L 
Sbjct: 399 IPWYEPVD---DS--LVRWKEGRTGFPLIDAAMRQLLAEGWLHHILRNITATFLTRGGLW 453

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFI 425
           + W  G ++F+  LLD D +   G W W +S+  +  +   +   P     R DP G ++
Sbjct: 454 ISWEAGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSKCTCPVALAYRLDPTGDYV 513

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVD 462
           + ++PEL N P   +H P     +  L         YP P+VD
Sbjct: 514 KRYVPELVNYPAHLVHEPWKATKEEQLEYGCTIGQQYPAPMVD 556


>gi|313675112|ref|YP_004053108.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Marivirga tractuosa DSM 4126]
 gi|312941810|gb|ADR21000.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Marivirga tractuosa DSM 4126]
          Length = 495

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 128/480 (26%), Positives = 211/480 (43%), Gaps = 52/480 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWL+ DLR+ D+  L  A  N     I  +   P        S R  +FI  SL+++
Sbjct: 11  IALVWLKRDLRLEDHAPLQKAS-NIGLPTIIFYAWEPSLLASSDFSNRHWNFIAESLIEM 69

Query: 69  QKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           Q  LSQ  + + Q H      + I++L +   +  +  LF + +  +     RD  ++  
Sbjct: 70  QSKLSQLEMSLIQVHT-----EVIDFLKAVQEKFDINYLFSHEETGLKITYERDNAVKFF 124

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL---PVPAIR 183
            +++ I         L  G    +     K +  F    I  +   D++++    +P I 
Sbjct: 125 CENQNIEWQEFQQFGLQRGR--KNRQDWSKSWYEFMSKPIIKIDLNDIKTIHLNELPGII 182

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QG 241
           L       NI     Y  + I      G   A   L  F  ++ + Y +    PA   + 
Sbjct: 183 LINDSEELNI-----YKEKGIAQTG--GTAQAYKYLNSFLSDRHFGYNKNISKPAEARKS 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN----ELIW-----REFYR 292
            S+LSPYL+ G +S R         F  ++   + G  S LN     L W     ++F  
Sbjct: 236 CSRLSPYLAYGNISMRVV-------FQSMISAKEHGNKSALNNFGSRLRWHCHFIQKFEM 288

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                + ++  G       + I  N++  L +AW++G TGFP++DA MR +   G+++ R
Sbjct: 289 EDRYEFENINRG------YDSIRQNENDILYEAWEKGETGFPLVDACMRCVTETGYLNFR 342

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +R +  SFLV  L   W+ G  +   Q LD +   +   +Q  A  G   +   R++NP 
Sbjct: 343 MRAMLVSFLVYHLWQPWKRGAMHLGRQFLDFEPGIHYPQFQMQA--GVTGINTIRMYNPV 400

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKN----DLSLNYPLPIVDHKKA 466
            Q K  DP G FI+ W+PEL NVP  +IH P   S++++     +L  +YP PI+D + A
Sbjct: 401 KQSKEHDPNGDFIKKWVPELQNVPIAFIHEPWKLSYIEQKSIHFELGKDYPSPIIDLEDA 460


>gi|326799096|ref|YP_004316915.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
 gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
          Length = 434

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 201/437 (45%), Gaps = 26/437 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----QHGISARQSHFIYASL 65
           LVW RNDLR+ DN+ L+ A   +D +V+ V++  P Q+       H     ++ FI  S+
Sbjct: 7   LVWFRNDLRVRDNEILWQALAKAD-RVVPVYVFDPRQFTPLKNGMHKTGVIRAKFILESV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ SL   G        S + + I  L +   + +V +++++R+    E     L+E+
Sbjct: 66  QDLRLSLRSLGADLLV--VSGYPEEI--LPTLAERYQVKEVYHHREVAKEETHISTLVEE 121

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L + R+  + F    L     +      +   +  FRK + +          PV  I +
Sbjct: 122 ALWKKRLNLRHFIGHTLYHKEDLPFPIKDIPDAFATFRKKIERETTIRPSVETPV-KIEV 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-- 242
              +  S IP      F A   +  I +Q+           ++   +   D  ++ G+  
Sbjct: 181 PDNLEASEIPSLASLGFSA--GLIGIADQSPFKGGETEGLRRLETLLAGADTASLTGSFG 238

Query: 243 ----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               + LSP++++G LS    ++ +K+ + D  + PK  A + +  L+WR+++R +   +
Sbjct: 239 SEEGTVLSPWIAMGCLSVHTVYHAVKK-YEDKSL-PKKQAAAIITGLLWRDYFRFMFKKH 296

Query: 299 PS-VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            +   + + F       E   D+ L   WK+G TG P +DAAM QLNTIG++ +  RM+ 
Sbjct: 297 GNKFFLQQGFSNEIPAYELVGDA-LFDRWKRGETGDPFVDAAMHQLNTIGFISHTARMLV 355

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           A +LV +L +   +G  YF  +L+D + ASN G W   A  G+ S     I +       
Sbjct: 356 AHYLVSNLNISHLLGAAYFEDKLVDYNPASNYGNWAHIAGVGS-STKDNGIRDIKKLQNL 414

Query: 418 FDPQGTFIRHW-LPELN 433
            D QG +++ W  P+L+
Sbjct: 415 LDAQGEYVKRWGTPQLS 431


>gi|229520286|ref|ZP_04409712.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae TM 11079-80]
 gi|229342652|gb|EEO07644.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae TM 11079-80]
          Length = 461

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 183/430 (42%), Gaps = 27/430 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q G + ++   +
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKR--VL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G          +    + L     Q  +T ++       +E +   
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVEAMAGSDERQAIA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180
            + +      I +    S+L  P   L  AL+ +   +T FRK      V+    S P+ 
Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETLSLSAPMG 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
             R+  P+         D   +     F  GEQ  L H    F       Y E R+ +  
Sbjct: 172 YPRVLPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKETRNGLDG 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      Y
Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR R + A
Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           + LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   +
Sbjct: 349 TCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 407

Query: 419 DPQGTFIRHW 428
           DP+G F+  W
Sbjct: 408 DPKGEFVAKW 417


>gi|218768929|ref|YP_002343441.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis Z2491]
 gi|121052937|emb|CAM09291.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis Z2491]
 gi|319411227|emb|CBY91634.1| deoxyribodopyrimidine photo-lyase (DNA photolyase;
           photoreactivating enzyme) [Neisseria meningitidis WUE
           2594]
          Length = 433

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 192/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G   +     Y+                +
Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     + DP GTF+R  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412


>gi|254283012|ref|ZP_04957980.1| DNA photolyase, putative [gamma proteobacterium NOR51-B]
 gi|219679215|gb|EED35564.1| DNA photolyase, putative [gamma proteobacterium NOR51-B]
          Length = 483

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 126/486 (25%), Positives = 202/486 (41%), Gaps = 47/486 (9%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W + DLR+ DN AL AA  +++  ++ +++  P   R      R  HFI  SL  +   
Sbjct: 1   MWFKRDLRLEDNAALSAAI-DANKPLLLLYLVEPRLLRDPHYRRRHWHFIAQSLRDLSSR 59

Query: 72  LSQKGIVFQYHQCS------NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           LS    +    +            ++     Y  ++   ++ Y R   ++E         
Sbjct: 60  LSPHDTLLHVLEADAEEVFPRLHRTLGIATIYSHEETGLEVTYARDRWVSE--------- 110

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLPVPAI 182
                   +S D   L  P + +    +  K ++  R    Q   Q D   L +LP    
Sbjct: 111 ------FAQSQDIDWLEYPTNGVQRGRRNRKGWS--RAWHQQMSAQPDSPRLNALPGRTP 162

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240
            L   ++     R   +  +   P F  G E+ A   L  F + +V  Y      PA   
Sbjct: 163 ALPEALSGRVCRRLAQW--ETTHPQFQRGGERRAHETLNSFLEGRVAGYQRGISKPAASR 220

Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
              S+LSPY++ G LS RQ +  L++       + +  AF     W    I +      M
Sbjct: 221 NSCSRLSPYIAWGNLSIRQVYQALQQAREKGQWRRQLAAFESRLHWHCHFIQKFEMECRM 280

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F P   + + +IP   +     D  L++AW +G TG+P+IDAAMR L   G+++ R R 
Sbjct: 281 EFEP---INRGYIPHRTEA----DPELVRAWCEGRTGYPLIDAAMRCLIATGYINFRSRA 333

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +  SFL   L  DWR G  +  S  LD +   +    Q  A  G   +   RI+NP  Q 
Sbjct: 334 MLTSFLCHYLAQDWRQGAAWLGSLFLDFEPGIHYAQMQMQA--GVTGINTIRIYNPVKQS 391

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
              DP G FI  W+PEL  +P    H P   S +++   S +YP P+V  + +     ++
Sbjct: 392 MDHDPDGDFIAQWVPELAGLPAPLRHQPWEMSAMERMLYSCDYPDPVVSPESSYREARDR 451

Query: 474 YYAAKK 479
            ++ KK
Sbjct: 452 LWSLKK 457


>gi|325145228|gb|EGC67508.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M01-240013]
          Length = 433

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 192/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G   +     Y+                +
Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHAD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     + DP GTF+R  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412


>gi|325131645|gb|EGC54351.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M6190]
 gi|325139007|gb|EGC61554.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           ES14902]
          Length = 433

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 192/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G   +     Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     + DP GTF+R  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412


>gi|153837520|ref|ZP_01990187.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810]
 gi|149749116|gb|EDM59921.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810]
          Length = 445

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 201/461 (43%), Gaps = 65/461 (14%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP--EQWRQHGISAR-QSHFIY 62
           + L W   DLR+ DN  L  A    D +++ ++     TP    + Q     R +  FI 
Sbjct: 5   IGLYWFTFDLRLHDNLLLVNASSFLD-ELVCLYCRPSVTPFLHHFAQEATLGRARQKFID 63

Query: 63  ASLLQVQKSLSQKG-----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           ASL ++  +L Q G     +    +Q   +  +I++L        VT L+ +     +E 
Sbjct: 64  ASLCELNDALGQLGQRLWTLDLPPYQALKY--AIQYLG-------VTHLYADAMAGSDEQ 114

Query: 118 RRDKLLEKRLQHRVICKS-----FDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQN 168
                L+    H VI +      FD+S L  P ++ +    + + +T FRK +    I +
Sbjct: 115 SILHKLQDEYPHLVIVQHAVRSLFDESKL--PFTLPD----LPETFTQFRKCVEGIDIAH 168

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKV 227
            + A  R  P P          + +P    + F     +F  GE + L H  R F     
Sbjct: 169 PIDAPSRLPPTP--------KDAQLPTLSSFYFDE-SALFSGGEWSGLAHCRRYFSSGLA 219

Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             Y E R+ +  +  +++ SP+L++G +SPR  +  LK+   +         +    EL+
Sbjct: 220 SSYKETRNGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQ--YEQTQGANDSTYWIYFELL 277

Query: 287 WREF-------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           WRE+       Y+  +  +  +    P   +         +H  Q WK G T +PI++A 
Sbjct: 278 WREYFYWYARCYQQRLFRFGGIRNQPPLTSFY--------AHRFQQWKNGTTPYPIVNAC 329

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           M QL+  G+M NR R + AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G
Sbjct: 330 MHQLDHTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVG 389

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
            D     R FN   Q + +DP   FI  W    +  P   +
Sbjct: 390 ADPRGS-RQFNLEKQTQMYDPNHEFIVRWQGRDSRAPQDVV 429


>gi|308049735|ref|YP_003913301.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Ferrimonas balearica DSM 9799]
 gi|307631925|gb|ADN76227.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Ferrimonas balearica DSM 9799]
          Length = 484

 Score =  121 bits (303), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 123/473 (26%), Positives = 205/473 (43%), Gaps = 50/473 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VWL+ DLR+ D+  L  AC  SDA ++ +++  P+       + R   F++ SL  +
Sbjct: 6   LQVVWLKRDLRLQDHAPLAFAC-RSDAPLLLLYLFEPQLVNDPHYAPRHWRFVWQSLKDL 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127
              L+  G       C    D I+ L+       + +L  + +  ++    RD+      
Sbjct: 65  NAGLAPHGGRVTCWFC----DPIDALNRLASDFTLVQLLSHEETGLSVTFERDQ------ 114

Query: 128 QHRVICKSFDDSVL----LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + +  DD+ +     P G++             +RK + Q   + D     V    
Sbjct: 115 ---AVSRWCDDNGVPWHQWPNGAVQRGLNHRRGWDGHWRKTMAQPTAEPDWAR--VRWCH 169

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           L     P++          A +   P GE  A   L  F  ++   Y      P    TS
Sbjct: 170 LPDQTIPADW-------RSAAEGFQPGGESAARDCLDGFLAQRGRDYHRHISQPGNSRTS 222

Query: 244 --QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
             +LSPYL+ G LS RQ   RL+++      +P   A +  + L WR+   H +  + S 
Sbjct: 223 CSRLSPYLAWGNLSVRQVIQRLRQDADTPDWRPARRALT--SRLKWRD---HFIQKFESE 277

Query: 302 CM--GKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           C   G+P         +++D+     L AW+ G TG+P++DA+MR L+  G+++ R+R +
Sbjct: 278 CAMEGRPINQAYRHFPYHQDADSDARLLAWQNGQTGYPLVDASMRALHQTGYLNFRMRAM 337

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPTIQG 415
             SFL   L++DWR G  +     LD +   +   +Q  AA TG  ++   RI+NP  Q 
Sbjct: 338 LVSFLCHHLMIDWRRGVHHLARLFLDFEPGIHYPQFQMQAAVTGIHTI---RIYNPVKQS 394

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD 462
              D  G FI+ + PEL  +P    H P         L + +   +YP PI+D
Sbjct: 395 LEQDSDGQFIQAFCPELARLPVPVRHTPWQLTPMEHLLYEFEPGRDYPSPIID 447


>gi|262147205|ref|ZP_06028009.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae INDRE 91/1]
 gi|262031362|gb|EEY49972.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae INDRE 91/1]
          Length = 461

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 182/430 (42%), Gaps = 27/430 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       I  F+A   Q  Q   S  +  F+
Sbjct: 5   IGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQ--QTQWSEAKKRFL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SLS  G          +    + L     Q  +T ++ +     +E +   
Sbjct: 63  NQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQAIA 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVP 180
            + +      I +    S+L  P   L  AL+ +   +T FRK      V+    S P+ 
Sbjct: 119 RIHQDFSSVHIHQQALHSLLSEPQ--LPFALEALPSTFTQFRKQ-----VETISLSAPMG 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
              +  P+         D   +     F  GEQ  L H    F       Y E R+ +  
Sbjct: 172 YPHVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYKETRNGLDG 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      Y
Sbjct: 232 MDYSTKFSPWLALGAVSPKTIYAMLQR--YEAVHGANDSTYWIFFELLWREYFYWYARRY 289

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +       I   + +        LQ WK G T FPI++A MRQLN  G+M NR R + A
Sbjct: 290 GAKLFRFSGIGEKKPLTSFYAQRFLQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   +
Sbjct: 349 SCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQAHTY 407

Query: 419 DPQGTFIRHW 428
           DP+G F+  W
Sbjct: 408 DPKGEFVAKW 417


>gi|239994034|ref|ZP_04714558.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii
           ATCC 27126]
          Length = 543

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 213/502 (42%), Gaps = 56/502 (11%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  SV ++W + DLR+ D++ LY A   ++  ++ +F   P       +  R   FI  S
Sbjct: 6   SKQSVTVIWFKRDLRLRDHEPLYRAVEKNE-NILPLFCWEPSLIADPHMDMRHWQFIQQS 64

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDD--------SIEWLDSYCLQQRVTKLFYNRQYEI-N 115
           +  +   L     +   H C   D         +I  + SY  Q+    + +NR   + N
Sbjct: 65  IDDINAQLPSGARLLTLH-CEVIDALELIAQHYAISTVRSY--QEIGLSVTHNRDISVSN 121

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV---------YTPFRK--A 164
            +++ K+     Q+  + +              +   + Y +         +T       
Sbjct: 122 YLKKKKINHIESQYGAVMRGLPHREQWQQNWDRHFTTKTYDIDINSVNWVDWTQHNNINT 181

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKF 222
             +NL +  L    + +   T     SN  R    D   + ++ M P GE+ A  +L+ F
Sbjct: 182 ACKNLDELGLFDCHITSQTGTHFSEKSNYYRQDVLD-KLKKLNKMQPGGERRAWQVLKDF 240

Query: 223 CKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
              +  YY +    P  A +  S+LSPYL+ G LS +Q +  ++ +     + P S    
Sbjct: 241 FDARGQYYHQHISKPEYARRACSRLSPYLAWGNLSIKQVYQSVQHQKQTKKLLPNSDRKQ 300

Query: 281 W-------LNELIWREFY------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
           W        + L W   +       H + + P +  G    P+ +  E  +  +L   W 
Sbjct: 301 WSRALAALTSRLHWHCHFIQKFESEHSIEWRP-MNSGYENFPFIDGPEAERRFYL---WT 356

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TG+P++DA MR L   G+++ R+R +  SFL   L V W     Y  +Q LD +   
Sbjct: 357 MGLTGYPLVDACMRALKYTGYLNFRMRAMVTSFLCHHLNVHWLKAAHYLATQFLDFEPGI 416

Query: 388 NNGGWQWAAS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-- 444
           +    Q  AS TG  +V   R++NP  Q  + DP+G FI+ W+PEL  +P++ +HAPH  
Sbjct: 417 HYPQIQMQASVTGIHTV---RLYNPATQSSKLDPEGVFIKKWVPELAKLPSEAVHAPHLL 473

Query: 445 ----SWLDKNDLSLNYPLPIVD 462
               + +   D+  +Y  P+VD
Sbjct: 474 PPLEAQMLDFDVERDYVEPLVD 495


>gi|224102189|ref|XP_002312581.1| predicted protein [Populus trichocarpa]
 gi|222852401|gb|EEE89948.1| predicted protein [Populus trichocarpa]
          Length = 573

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 201/456 (44%), Gaps = 73/456 (16%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF-IYAS 64
           + S  +VW R DLRI DN AL A+    D  V  VFI  P++ + +    R S + +  S
Sbjct: 2   SSSKTIVWFRRDLRIEDNPALAASAR--DGCVFPVFIWCPKEGQFY--PGRVSRWWLKQS 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLL 123
             Q+ +SL     V          DSIE + +       T + +N  Y+ ++ VR   + 
Sbjct: 58  FAQLGQSLEISCTV------GALLDSIETIGA-------TTVAFNHLYDPVSLVRDHNIK 104

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           EK ++  +  +S++  +L  P  I +     +  +  +R       ++      P   + 
Sbjct: 105 EKLVELGIFVQSYNGDLLYEPWEIYDERGYAFTTFEAYRDKCWHMQMEPVSHLPPWRLVP 164

Query: 184 LTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQ----NALHILRKFCKEKVYYYVEQRDIP 237
             G +   ++      D   ++ + +   G      NA  +     + +V  +       
Sbjct: 165 AAGTIVMCSVEELGLEDEAEKSSNSLLGRGWSPGWGNAHLVGHAKSRLRVGSF------- 217

Query: 238 AIQGTSQLSPYLSIGVLSPRQC----------WNRLKEEFVDLLIKPKSGAFSWLNELIW 287
               +S LSPYL  G LS R+           W++ +E  V      K     +L  +  
Sbjct: 218 ----SSLLSPYLHFGELSVRKVFWCVQMKQLLWSK-EENSVG-----KESVTQFLRSIGL 267

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE  R+L   +P     +  +   +   WN +    +AW+QG TG+P++D  MR+L  IG
Sbjct: 268 RECSRYLCFNFP-FTHERLLLSNLKYFPWNANQVHFKAWRQGRTGYPLVDDGMRELWAIG 326

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+HNR+R I +SF VK LL+ WR G    ++ +L         GWQ+ + +  D+    R
Sbjct: 327 WIHNRIRAIVSSFAVKVLLLPWRWG----LNDIL---------GWQYISGSLPDAHELER 373

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           + NP IQG +FDP+G +       L  +PT++IH P
Sbjct: 374 LDNPEIQGSKFDPEGEY-------LTRMPTEWIHHP 402


>gi|304389124|ref|ZP_07371166.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis ATCC
           13091]
 gi|304336923|gb|EFM03115.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis ATCC
           13091]
          Length = 433

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 192/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-FPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G   +     Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     + DP GTF+R  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412


>gi|254281574|ref|ZP_04956542.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
 gi|219677777|gb|EED34126.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
          Length = 439

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 181/435 (41%), Gaps = 43/435 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           HL W + DLR+ DN AL +         + +   T       G+  ++  F+  SL  ++
Sbjct: 9   HLHWFQRDLRLADNPALSSHVAADTLLCVYLMPKTGPWCNVTGMGPQRDRFLRESLQALR 68

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
             L++ G   +V +        D +   D   +       +Y R           L  +R
Sbjct: 69  DELNRLGQDLLVLEGSPELVLPDLVSRFDITEVSACTAPGYYER-----------LTYER 117

Query: 127 LQHR--VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           LQ R  V  +    + L     +          +TPFRK +        L   P  A  +
Sbjct: 118 LQRRLGVPFELHRGNTLFTEDQLPTGLADFPATFTPFRKQV------EPLTITPPAAEPV 171

Query: 185 TGPVTPSNIPRFFDY--PFQAI-DPMFPI--GEQNALHILRKFC--KEKVYYYVEQRD-I 236
           T P  P+     FD   P QA+  P  PI  G    L  +R+F   + ++  Y E R+ +
Sbjct: 172 TLPPPPAAQ---FDAIPPAQALPSPALPIPGGRAAGLRRVRQFIFDERRIVSYKETRNCL 228

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFY--RH 293
             + G+S LSP+L+ G LS R+  + +     + L    +    WL  EL+WREF+  R 
Sbjct: 229 DGLDGSSSLSPWLANGNLSAREVAHEIFRFEREQLANEST---YWLFFELLWREFFQWRA 285

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +    +G              D      W  G T FP+++A M QL   GWM NR 
Sbjct: 286 VIDDHGLFHIGGV---QKRGRRCCFDPRAFARWSAGDTDFPLVNALMHQLTDTGWMSNRG 342

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R I AS L+ +L  DWR G  +F   L+D D+ SN G WQ+ A  G D     R FN   
Sbjct: 343 RQIVASCLINELGQDWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPR-GGRHFNLDK 401

Query: 414 QGKRFDPQGTFIRHW 428
           Q  + DP+  F   W
Sbjct: 402 QAAQHDPENIFTTKW 416


>gi|194099599|ref|YP_002002730.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           NCCP11945]
 gi|240014955|ref|ZP_04721868.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           DGI18]
 gi|240017403|ref|ZP_04723943.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           FA6140]
 gi|240118782|ref|ZP_04732844.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           PID1]
 gi|240122024|ref|ZP_04734986.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           PID24-1]
 gi|254494581|ref|ZP_05107752.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 1291]
 gi|268604493|ref|ZP_06138660.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1]
 gi|193934889|gb|ACF30713.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513621|gb|EEH62966.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 1291]
 gi|268588624|gb|EEZ53300.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1]
          Length = 432

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 190/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA     + VI ++I   E       + R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+++GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLARRGIPLYTAA------SPAGLVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D SV     L P     +     Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQPPAGSDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL        P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------PAPPPAALSDGIFLPQNG-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS+G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQAASYSV-LKDFPSRKNTSLMGAYLSVGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHAD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     R DP GTFI+  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412


>gi|59802028|ref|YP_208740.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA
           1090]
 gi|239999799|ref|ZP_04719723.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           35/02]
 gi|240081545|ref|ZP_04726088.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           FA19]
 gi|240124322|ref|ZP_04737278.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           PID332]
 gi|240126533|ref|ZP_04739419.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128995|ref|ZP_04741656.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268595609|ref|ZP_06129776.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02]
 gi|268597641|ref|ZP_06131808.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19]
 gi|268682948|ref|ZP_06149810.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332]
 gi|268685113|ref|ZP_06151975.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679]
 gi|268687375|ref|ZP_06154237.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035]
 gi|293398069|ref|ZP_06642274.1| deoxyribodipyrimidine photo-lyase [Neisseria gonorrhoeae F62]
 gi|59718923|gb|AAW90328.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA
           1090]
 gi|268548998|gb|EEZ44416.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02]
 gi|268551429|gb|EEZ46448.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19]
 gi|268623232|gb|EEZ55632.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332]
 gi|268625397|gb|EEZ57797.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679]
 gi|268627659|gb|EEZ60059.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035]
 gi|291611332|gb|EFF40402.1| deoxyribodipyrimidine photo-lyase [Neisseria gonorrhoeae F62]
 gi|317165088|gb|ADV08629.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 432

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 190/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA     + VI ++I   E       + R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+++GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLARRGIPLYTAA------SPAGLVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D SV     L P     +     Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQPPAGSDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL        P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------PAPPPAALSDGIFLPQNG-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS+G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQAASYSV-LKDFPSRKNTSLMGAYLSVGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHAD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     R DP GTFI+  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412


>gi|329910859|ref|ZP_08275394.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546064|gb|EGF31136.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 498

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 204/495 (41%), Gaps = 49/495 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLRI D+  L  A   +   V+A+F+  PE       SA    FI   L  +
Sbjct: 1   MEIVWFKRDLRIRDHAPLADAV--AAGPVLALFLHEPEIILAPDFSAAHGAFIRECLDSL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--RRDKLLEKR 126
             +L ++G         +  D +E +     QQ+      + Q   N    +RD+ +   
Sbjct: 59  HAALQERGGEL-VEMTGSAPDMLEQI----WQQQPFATLRSHQETGNRASYQRDEQVAAW 113

Query: 127 LQHRVIC--KSFDDSVLLPPGSILNH----ALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            + R +   +S  + V+    +         L  Y    P +    +++V + L  +   
Sbjct: 114 CRKRGVTWRQSPQNGVIRGQEARAKRDWIAELDDYSSSEPVKPP--RHIVPSKLPPM--- 168

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRDIPA 238
              LTGPV P       D P +        G   A+ +L  F + ++  Y Y     I A
Sbjct: 169 ---LTGPVAPLQAA-GHDKPGR-----MKGGRAEAIGLLTAFIRTRILRYPYAISSPITA 219

Query: 239 IQGTSQLSPYLSIGVLSPRQ---CWNRLKEEFVDLLIKPK------SGAFSWLNELIWRE 289
             G S+LSP+L+ GV++ R+     NR + +  +L +         S    + + L WR 
Sbjct: 220 EHGCSRLSPFLAYGVITMREIVLAMNR-RVDSAELAVNEAERERLISALRFFADRLRWRA 278

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            Y   M   P +             E   D      W++G TG+P++DAAM+ L+  GW+
Sbjct: 279 GYFQNMESMPRLEFDNIHSGMNGLREGEFDPVFFARWREGETGYPMVDAAMKMLHHTGWL 338

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           + R+R +  SF V +L + WR    +   + +D + A +    Q  A T          +
Sbjct: 339 NMRMRGMLLSFAVNELWLHWREPALFLAREFVDYEPAIHYNQMQIHAGTAGAG--SMLAY 396

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463
           NP  Q +  DP+G F+R WLP L  VP  YI  P +            +  +YP P+VDH
Sbjct: 397 NPVKQAQELDPKGIFVRRWLPALRAVPDAYIFTPWTMPPAVQTACGVAIGSDYPAPLVDH 456

Query: 464 KKACHHTLNQYYAAK 478
             A     ++   A+
Sbjct: 457 LDAARQARSRVADAQ 471


>gi|116075315|ref|ZP_01472575.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
 gi|116067512|gb|EAU73266.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
          Length = 507

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 128/283 (45%), Gaps = 27/283 (9%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           G ++ L  L  F   +V  Y      P  A +G S+LSPYL+ G LS       ++E   
Sbjct: 196 GRESGLQELSDFLTSRVQRYARSISSPVVAFRGCSRLSPYLTWGCLS-------MREVVQ 248

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
                   G  S+ + L W   +   +   P++     F P+   I    DS   QAWK+
Sbjct: 249 ASRTLTGRGVSSFGSRLHWHCHFIQKLESEPAIEF-HDFHPFMRGIR-PMDSERFQAWKE 306

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG P +DA MR L   GW++ R+R +  SF    L + WR    +   Q +D      
Sbjct: 307 GRTGVPFVDACMRALLAHGWINFRMRAMLMSFASYHLWLPWRESGLHLARQFVD-----Y 361

Query: 389 NGGWQWA---ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
             G  W+     +G+ ++   RI+NP  QG+  DP G FIR W PEL ++P  Y+H P  
Sbjct: 362 EPGIHWSQCQMQSGSTAINTIRIYNPVKQGQDHDPNGRFIREWCPELASLPNVYLHEPWK 421

Query: 446 WLDKN-------DLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            LD          L ++YP P+VD   A     ++ +  ++ +
Sbjct: 422 -LDARRAEQLGCRLGVDYPAPVVDPTAAAREAKDRIWEIRRAA 463



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           LVW + DLR  DN+ L  AC  +   V+ ++I  PE WRQ   SARQ  F   SL  ++
Sbjct: 9  QLVWFKRDLRTVDNRPLLEAC--AHGPVLPLYIVEPEYWRQPDASARQWEFCRESLEHLR 66

Query: 70 KSLSQKG 76
          + L+  G
Sbjct: 67 RELAALG 73


>gi|269965489|ref|ZP_06179607.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
 gi|269829852|gb|EEZ84083.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
          Length = 450

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 199/443 (44%), Gaps = 53/443 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP--EQWRQHGISARQS-HFIY 62
           + L W  NDLR+ DN  L +A    D ++I ++     TP    + Q     R    F+ 
Sbjct: 5   IGLYWFTNDLRLHDNPLLKSASVEMD-ELICLYCYPSMTPYLHHFAQEASFGRAKLQFLD 63

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--D 120
           +SL ++ +SL+  G      + +  D +I+    Y + +      Y   +  ++ ++  D
Sbjct: 64  SSLSELNQSLNHLGQRLWAVELTP-DQAIK----YAVNRFGVTHIYADAFPGSDEQQALD 118

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           ++ E     ++  ++     LL    +      +   +T FRK      V+    S P  
Sbjct: 119 RVAEGASHVKIKQQAI--RTLLREEQLPFDLSNLPTTFTQFRKQ-----VEGLDISRPHE 171

Query: 181 AIRLTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
           +IR   P+    N+P    Y F A    F  GE   L H  + F       Y + R+ + 
Sbjct: 172 SIRSLPPIPLGVNLPSVTAYYFDA-KAAFHGGESRGLEHCRQYFASTLASEYKQTRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELIWREFY-- 291
            +  +++ SP+L+ G +SP+  +  LK        + ++GA     W+  EL+WRE++  
Sbjct: 231 GMDYSTKFSPWLAHGCVSPKTIYAMLKR------YEAENGANDSTYWIYFELLWREYFYW 284

Query: 292 ------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
                 R L  F   +    P   +         +H  Q WK+G T FPI++A M QLN 
Sbjct: 285 YARRHKRQLFRF-GGIQNRAPLTSFY--------AHRFQQWKKGETPFPIVNACMHQLNE 335

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R + AS LV +L +DWR G  YF SQL+D D+ASN G WQ+ A  G D    
Sbjct: 336 TGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRGS 395

Query: 406 FRIFNPTIQGKRFDPQGTFIRHW 428
            R FN   Q + +DP   FI  W
Sbjct: 396 -RQFNLEKQTEMYDPHMEFIDRW 417


>gi|324103935|gb|ADY17887.1| cryptochrome [Spodoptera exigua]
 gi|324103937|gb|ADY17888.1| cryptochrome [Spodoptera exigua]
          Length = 548

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/246 (32%), Positives = 118/246 (47%), Gaps = 25/246 (10%)

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           LSP L  G LS R  +  +++ F  +    +   S +     +LIWRE++  +    P+ 
Sbjct: 258 LSPALRFGCLSVRSFYWSVQDLFRQVHQGRLTSNSASHFITGQLIWREYFYTMSVNNPNY 317

Query: 302 --CMGKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
               G P    IPW            LQ W +G TGFP +DAAMRQL T GW+H+  R  
Sbjct: 318 GQMAGNPICLDIPWK-----TPSGDELQRWMEGRTGFPFVDAAMRQLRTEGWLHHAARNT 372

Query: 357 TASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQ 414
            ASFL +  L + W  G  +F+  LLD D +   G W W +S+  ++ +       P   
Sbjct: 373 VASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRL 432

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKA 466
           G+R DP G ++R ++PEL  +P +YI+ P  W    D        +  +YP P+V+H  A
Sbjct: 433 GQRLDPSGEYVRRYVPELARMPVEYIYEP--WKAPIDVQERASCIIGKDYPDPVVNHLVA 490

Query: 467 CHHTLN 472
                N
Sbjct: 491 AQRNRN 496


>gi|149926570|ref|ZP_01914831.1| deoxyribodipyrimidine photolyase family protein [Limnobacter sp.
           MED105]
 gi|149824933|gb|EDM84147.1| deoxyribodipyrimidine photolyase family protein [Limnobacter sp.
           MED105]
          Length = 559

 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 126/505 (24%), Positives = 212/505 (41%), Gaps = 55/505 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M +HLVWL+ DLR++D+   +AA      S+  V+A++   P+  RQ   + +   F   
Sbjct: 1   MHLHLVWLKKDLRLSDHAPWHAATKAAKESNGCVVALYCLEPKLIRQPDSAPQHFEFARE 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN--EVRRDK 121
           SL ++ + L ++  +      +N   +++ +   C Q  +    Y+ Q   N     RDK
Sbjct: 61  SLQELAEQLPEQVPLLLAK--ANAPVALQTMALCCQQISI----YSHQETGNWASFVRDK 114

Query: 122 LLEKRLQ-HRVICKSFDDSVLLPP-------GSILNHALQMYKVYTPFRKALIQNL---- 169
            ++   + H +    F ++ ++         G +    ++   +  P    L Q      
Sbjct: 115 EVKAWCESHSIAWLEFQNNAVVRKLKNRDEWGKLWLDTMRKPVLPVPDFSELPQATWFDF 174

Query: 170 ---VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI--GEQNALHILRKFCK 224
               Q  L    +P ++L   + P        YP    D       G Q A   L +F  
Sbjct: 175 PQNFQQQLEVNGLPCVQLNRSLWPQWAQYVHFYPKHLTDKTLRQRGGRQQAQRCLSEFLS 234

Query: 225 EKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRL---KEEFVDLLIKPKSGAF 279
           E+   Y  +   P  A    S+LSPYL+ GV+S R+    L   +++  +  + PK+   
Sbjct: 235 ERGMNYRFEMSSPLSAESACSRLSPYLAFGVISIREMLEALSQARQQLTESSLLPKAQT- 293

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE------------KIEWNKDSHLLQAWK 327
            W   L   E   H    +      +P + +              ++   ++   L AW 
Sbjct: 294 QWKQSLKSFESRLHWHCHFIQKLESEPELEFRSAHRGLNAMRNFAELSPEENQKAL-AWI 352

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           +G TGFP++DA MR L   GW++ R+R +  +F    L +DWR        + LD +   
Sbjct: 353 EGRTGFPMVDACMRMLRATGWVNFRMRAMLVAFASYQLWLDWRHTAPMLAREFLDYEPGI 412

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HS 445
           +    Q+   +G   +   RI+NP  Q K  DPQG FIR W+PEL N+P  +I  P    
Sbjct: 413 HYP--QFQMQSGVTGINTLRIYNPVKQAKDHDPQGVFIRRWIPELKNIPDPWIGEPWNTP 470

Query: 446 WLDKNDLSL----NYPLPIVDHKKA 466
            L + +       +YP P+VD   A
Sbjct: 471 QLIQQECGCIVGEDYPWPVVDPDTA 495


>gi|121635578|ref|YP_975823.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis FAM18]
 gi|161870775|ref|YP_001599948.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis 053442]
 gi|120867284|emb|CAM11055.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis FAM18]
 gi|161596328|gb|ABX73988.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis 053442]
 gi|325128961|gb|EGC51813.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           N1568]
 gi|325199013|gb|ADY94469.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           G2136]
          Length = 433

 Score =  120 bits (300), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 191/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G   +     Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W  AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     R DP GTFI+  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412


>gi|240113824|ref|ZP_04728314.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           MS11]
 gi|268599892|ref|ZP_06134059.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11]
 gi|268584023|gb|EEZ48699.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11]
          Length = 432

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 189/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA     + VI + I   E       + R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGICIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+++GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLARRGIPLYTAA------SPAGLVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D SV     L P     +     Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQPPAGSDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL        P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------PAPPPAALSDGIFLPQNG-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS+G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQAASYSV-LKDFPSRKNTSLMGAYLSVGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHAD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     R DP GTFI+  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412


>gi|325284597|ref|YP_004264060.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP]
 gi|324316086|gb|ADY27200.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP]
          Length = 757

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 125/513 (24%), Positives = 207/513 (40%), Gaps = 81/513 (15%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V +VW + DLR++D+ AL  A       V+ ++I  PEQ      +     ++   L  +
Sbjct: 4   VAVVWFKKDLRVSDHAALSRAAER--GPVLPLYIYEPEQLGHEEFAGHHLTYLNECLHDL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++ G          + +++E L++   +  V  L+ + Q   N V   + L     
Sbjct: 62  SARLARLGAPL----VIRYGEAVEVLEALSREVTVGSLWAH-QETGNGVSFARDLRVHAW 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----------LRSL 177
            R     F                     Y P ++ +I+ +V  D              L
Sbjct: 117 ARARGIPF---------------------YEPPQQGVIRRMVNRDGWADAWEERMSAPPL 155

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALH-ILRKFCKEKV--YYYV 231
           PVPA+R     TP+++    D+    +     + P G + A H IL  F + +   Y + 
Sbjct: 156 PVPALRGVA-GTPASL-GVLDHAALRVPLGRRVIPQGGEAAAHDILESFLQRRGRDYMWA 213

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIW 287
               + A    S+LS  L+ G +S R      ++     + +  +       S+ + L W
Sbjct: 214 MSSPLTAEDACSRLSAPLAFGTVSARTVLLATRQALARAVAEQDAQWERSLRSFESRLHW 273

Query: 288 REFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           R+ +   +   P +    + + +    E   WN++    Q W++G TG+P+IDA MR L 
Sbjct: 274 RDHFIQRLESEPRMEFENLNRAYDGLREP-HWNEE--YFQRWQEGQTGYPLIDATMRMLR 330

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA---ASTGND 401
             GW++ R+R +  SF  + L + WR    +   Q LD     N  G  W+     +G  
Sbjct: 331 ATGWLNFRMRAMLVSFAAQHLWLHWRRPGLFLARQWLD-----NEPGIHWSQMQMQSGTV 385

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-------LDKNDLSL 454
            +   RI++PT Q +  DP G FIR W+PEL  VP     APH W       L    L L
Sbjct: 386 GINRSRIYSPTRQAREQDPDGEFIRRWVPELAGVP-----APHIWRPWELPPLAARGLGL 440

Query: 455 ----NYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
               +YP P+VD          +  A +   L 
Sbjct: 441 RLGRDYPYPVVDEHAPAREAHRRLQAVRDTPLF 473


>gi|51948354|gb|AAU14281.1| cryptochrome-like protein 2 [Ostreococcus tauri]
          Length = 548

 Score =  119 bits (299), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 123/259 (47%), Gaps = 31/259 (11%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL  G++SPR  ++       DL+ K        +++  W   YR  +A++    
Sbjct: 162 SRLSPYLRFGMISPRTVYH-------DLVKKDGKN----ISKTFWHRLYRRELAYW--QL 208

Query: 303 MGKPFIPWT------EKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
              P +P T      E   W   ++    L+ W++G TGFP++D  MR+L   GWMH   
Sbjct: 209 HHWPDLPKTSVRSHYENRAWLSGDEADEALRRWQRGETGFPVVDCGMRRLWRTGWMHQTE 268

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPT 412
           RMITA+FLV  L V W  G ++FM  L+D D A N+  WQ A  +G D   +F     P 
Sbjct: 269 RMITATFLVDYLGVHWTRGADWFMRTLVDADEAINSMMWQNAGKSGLDQWDFFEGTLAPD 328

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYI-----HAPHSWLDKNDLSLNYPLP---IVDHK 464
              +  DP G  I  W+PEL  +P  Y+      A  + L + D+ L    P   IVD  
Sbjct: 329 GSARAHDPHGDAIARWIPELAALPRGYLRHRPWEASKATLAECDVELGSTYPRRMIVDLD 388

Query: 465 KACHHTLNQYYAAKKQSLL 483
           +A    L+     +   L+
Sbjct: 389 RARQRMLDDVTTIRHAELV 407


>gi|119945273|ref|YP_942953.1| DNA photolyase FAD-binding subunit [Psychromonas ingrahamii 37]
 gi|119863877|gb|ABM03354.1| DNA photolyase, FAD- binding- domain protein [Psychromonas
           ingrahamii 37]
          Length = 448

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 128/477 (26%), Positives = 196/477 (41%), Gaps = 77/477 (16%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFI 61
           M   L W+  DLRI DN AL  A  +   +++ V++   + +  +   ++     +  F+
Sbjct: 1   MKRTLYWVNKDLRINDNAALNLASKSD--RLLCVYVVDKQSFEANNFQSKPLGDIRWQFL 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L    +SLS+ G          + D++  L   C   ++T +   +     E R   
Sbjct: 59  QGCLEDFNESLSKLGQAMHIV----YGDTLSTLMRLCESYQITDVITTKLPGTYENRLIT 114

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLP 178
            L +RL    I    D   L    S+     ++   Y+ FRK + + ++    + ++SLP
Sbjct: 115 QLNERLPELTI-DQVDQFTLFTKKSLPFELDELPISYSKFRKKMAEVIIPEPVSTVQSLP 173

Query: 179 VPAIRLTGPV--------TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF--CKEKVY 228
                L  P         T S I     + F+        GEQ  L  LR++        
Sbjct: 174 SMFDTLPAPTRFKPEWLPTVSAIKAKQGFEFEG-------GEQQGLKHLRQYFSSNSPAE 226

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y   + ++   + +S+LSP+L+ G +S RQ  N L E F     K  S    +L EL+WR
Sbjct: 227 YKQVRNNLDGWKNSSKLSPWLNSGCISVRQVMNNLAE-FEQQHGKNSSTECLYL-ELLWR 284

Query: 289 EFY--------------------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           E+Y                    R L  FYP                +NK       W  
Sbjct: 285 EYYQWVHYKVGAKTYQFKGLAKHRPLTTFYPE--------------RFNK-------WCL 323

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G T + +++A M +L   G++ NR R I AS LV +L VDWR G  +F  QL+D D A N
Sbjct: 324 GNTPYSLVNAFMHELRQTGYLSNRGRQIVASCLVNELSVDWRYGAAWFEEQLIDYDAAVN 383

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
            G WQ+ A  G D     R FN   Q   +DP G +   W+ +L+   TQ   A  S
Sbjct: 384 WGNWQYIAGVGVDPRG-GRHFNIEKQTTLYDPNGDYQAQWI-DLSQQSTQANQALDS 438


>gi|319639589|ref|ZP_07994336.1| deoxyribodopyrimidine photolyase [Neisseria mucosa C102]
 gi|317399160|gb|EFV79834.1| deoxyribodopyrimidine photolyase [Neisseria mucosa C102]
          Length = 413

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 193/454 (42%), Gaps = 57/454 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LR+ DN AL AA   S   +  V++    Q      + RQS F Y +  ++  
Sbjct: 9   LVWFRRNLRLHDNAALNAAV-ASGLPIACVWV---NQRPSENHNPRQSLFHYQAAQELHT 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I   Y   S+ D     L           +  +  Y   E+R+D LL   L   
Sbjct: 65  RLAAHHIPL-YAVASDED-----LLPLAATLHAHTIITDEAYTEAEIRQDNLLWHNLDRA 118

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +  +D  +L    +++     Y  +T +++A +Q   +       +P        T
Sbjct: 119 GIALQHANDRGILAKAPLMDANGLPYTDFTAYKQAWLQAYSEQRPSETELPV------QT 172

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             N+P F  +    +      GE  AL     F +  V+Y + Q + PA + TS L+ YL
Sbjct: 173 GQNVPLFPAHTGAVLPAYQQGGETAALTQWHAFKQNLVHYPITQ-NFPARKNTSLLNAYL 231

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSVCMGKP 306
           S G +SPR             L+  +S A   F WL++LI+R+ Y + +A++  +     
Sbjct: 232 SAGCISPR-------------LLAAESLANRHFEWLDKLIFRD-YCYQLAYHRRLPETTD 277

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P  E             W+ G TG P+IDA++R L   G +H  L+ + A +    L 
Sbjct: 278 AAPVREY------------WRNGRTGVPVIDASIRSLEATGHLHPVLQQLCAHYFCHALN 325

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +D   G  +  S     D A N   W  AA     +V Y        +  + DP G++IR
Sbjct: 326 LDPNQGIAWTASVQTGTDPALNQANWHLAAQ-DTATVRYAH------RSHQIDPDGSYIR 378

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLP 459
            +LPEL ++P+  IH P  W   +D+  + YP P
Sbjct: 379 SYLPELAHLPSTLIHTP--WAAADDIDTHGYPFP 410


>gi|325203409|gb|ADY98862.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M01-240355]
          Length = 433

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 191/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G   +     Y+                +
Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W  AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     R DP GTFI+  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412


>gi|167837240|ref|ZP_02464123.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis
           MSMB43]
          Length = 148

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 84/157 (53%), Gaps = 38/157 (24%)

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPF----IP------WTEKIEWNKDSHLLQAWKQG 329
           ++L+EL WREF           C  +P+    +P        + + W  D   L AW++G
Sbjct: 19  TFLSELGWREF-----------CWAQPYRFPDLPRRSLRHTLDGMPWRDDPAALAAWRRG 67

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P +DA MR+L   G MHNR R +  SFLVK LL+DWR+G+ +F   L+D D A   
Sbjct: 68  ATGYPFVDAGMRELRATGGMHNRARTVCTSFLVKHLLIDWRVGDAWFRDTLVDADAA--- 124

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
                         PYFRIFNP  QG+RFDP G ++R
Sbjct: 125 --------------PYFRIFNPVAQGRRFDPDGAYVR 147


>gi|254671546|emb|CBA09171.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha153]
          Length = 433

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 128/469 (27%), Positives = 191/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E       + R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G   +     Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W  AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     R DP GTFI+  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412


>gi|325202884|gb|ADY98338.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M01-240149]
          Length = 433

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 129/470 (27%), Positives = 191/470 (40%), Gaps = 93/470 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E       + R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G   +     Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPNL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYP--SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
             +W + +I R+F+  L   +   S   G P           + +  L  W+QG TG PI
Sbjct: 265 --AWADNIIRRDFFLQLALQHTDDSPSDGNP-----------EHTLRLTLWQQGQTGIPI 311

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           IDAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W  A
Sbjct: 312 IDAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLA 371

Query: 396 ASTGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           AS         R   P I     R DP GTFI+  +PEL ++    +H P
Sbjct: 372 AS---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412


>gi|316985228|gb|EFV64180.1| FAD binding domain of DNA photolyase family protein [Neisseria
           meningitidis H44/76]
 gi|325141125|gb|EGC63628.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           CU385]
 gi|325199492|gb|ADY94947.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           H44/76]
          Length = 433

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 191/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRTVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G         Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPQPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     + DP GTF+R  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412


>gi|308811873|ref|XP_003083244.1| Deoxyribodipyrimidine photolyase/cryptochrome (ISS) [Ostreococcus
           tauri]
 gi|116055123|emb|CAL57519.1| Deoxyribodipyrimidine photolyase/cryptochrome (ISS) [Ostreococcus
           tauri]
          Length = 489

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 123/259 (47%), Gaps = 31/259 (11%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL  G++SPR  ++       DL+ K        +++  W   YR  +A++    
Sbjct: 103 SRLSPYLRFGMISPRTVYH-------DLVKKDGKN----ISKTFWHRLYRRELAYW--QL 149

Query: 303 MGKPFIPWT------EKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
              P +P T      E   W   ++    L+ W++G TGFP++D  MR+L   GWMH   
Sbjct: 150 HHWPDLPKTSVRSHYENRAWLSGDEADEALRRWQRGETGFPVVDCGMRRLWRTGWMHQTE 209

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPT 412
           RMITA+FLV  L V W  G ++FM  L+D D A N+  WQ A  +G D   +F     P 
Sbjct: 210 RMITATFLVDYLGVHWTRGADWFMRTLVDADEAINSMMWQNAGKSGLDQWDFFEGTLAPD 269

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYI-----HAPHSWLDKNDLSLNYPLP---IVDHK 464
              +  DP G  I  W+PEL  +P  Y+      A  + L + D+ L    P   IVD  
Sbjct: 270 GSARAHDPHGDAIARWIPELAALPRGYLRHRPWEASKATLAECDVELGSTYPRRMIVDLD 329

Query: 465 KACHHTLNQYYAAKKQSLL 483
           +A    L+     +   L+
Sbjct: 330 RARQRMLDDVTTIRHAELV 348


>gi|213650723|ref|ZP_03380776.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 158

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 89/145 (61%), Gaps = 2/145 (1%)

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +EK L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P I
Sbjct: 1   MEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKI 59

Query: 183 RLTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           R++G ++    P   +YP QA D  +FP+ E   +  LR FC +    Y  +RD PA+ G
Sbjct: 60  RVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDG 119

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEE 266
           TS+LS  L+ G LSPRQC +RL  E
Sbjct: 120 TSRLSASLATGGLSPRQCLHRLLAE 144


>gi|109896482|ref|YP_659737.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c]
 gi|109698763|gb|ABG38683.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Pseudoalteromonas atlantica T6c]
          Length = 495

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 25/273 (9%)

Query: 206 PMFPIG-EQNALHILRKFCKE--KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW-- 260
           P F +G E+ A + L  F KE  K Y Y     I +    S+LSPYL+ G +S RQ +  
Sbjct: 191 PAFQLGGEKRAWYTLHHFLKERGKAYAYSVSSPIKSRTACSRLSPYLAWGNISTRQVYQS 250

Query: 261 --NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
             ++  ++     I        W    I +      M F P   + K ++ +  +    K
Sbjct: 251 TASKKHKDGWQRAINAFRSRLHWHCHFIQKFESESDMEFRP---VNKAYLAYEYEQGEQK 307

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D++L QAWK G TG PI+DA++R L+  G+++ R+R +  SFL   L +DWR G  +   
Sbjct: 308 DANL-QAWKTGQTGIPIVDASIRCLHQTGYLNFRMRAMLVSFLCHHLNIDWREGAIHLAQ 366

Query: 379 QLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LD +   +   +Q  AS TG + +   R++NP  Q +  DPQG FIR ++PE++++P 
Sbjct: 367 LFLDFEPGIHYPQFQMQASVTGTNLI---RLYNPVKQSQDKDPQGQFIRRFIPEISDLPD 423

Query: 438 QYIHAPHSWL--------DKNDLSLNYPLPIVD 462
             IH P  WL         + +L   YP P++D
Sbjct: 424 ALIHTP--WLLTPMECQIYEVELGRTYPHPMID 454


>gi|325205374|gb|ADZ00827.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M04-240196]
          Length = 433

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 191/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G   +     Y+                +
Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W  AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     + DP GTF+R  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412


>gi|254516979|ref|ZP_05129037.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
 gi|219674484|gb|EED30852.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
          Length = 438

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 179/428 (41%), Gaps = 31/428 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W RNDLR+ D+  L AA    +  ++ ++          G+  ++  FI  SL ++ K
Sbjct: 8   IYWFRNDLRLHDHPGLVAAAAADELLLVYLWPRQRAWCNTQGLGEQRERFICESLTELAK 67

Query: 71  SL---SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            L    QK +V Q        D +           V  +  ++     E R  ++L +RL
Sbjct: 68  DLQPLGQKLLVLQGSPELVIPDLVR-------DYGVNAIHTSQCAGSYETRALRVLRERL 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----LRSLPVPAIR 183
              V+      + L     +     ++   ++PFR+ + + L   +    L  LP P   
Sbjct: 121 DIPVL--EHGGNSLFQEKDVAALCPELLDSFSPFRRKVEKQLTAVEPSRNLPQLPAPPAV 178

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRD-IPAIQG 241
               + P+        P +        G       L++F     +  Y E R+ +  ++G
Sbjct: 179 QFHSIPPARTKPPLGLPLRG-------GSHAGQRRLKQFLDSGAIRQYKETRNCLDPLEG 231

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFYPS 300
           +S LSP+LS+G +S R+    + +   +   +  + +  WL  EL+WRE++    A    
Sbjct: 232 SSTLSPWLSLGSISAREIAAAIAQHEAE---QGANESTYWLYFELLWREYF-FWRALRDG 287

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V + +             +      W  G T  P+++A M QL   GWM NR R I AS 
Sbjct: 288 VNLFRHGGRQGAVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMSNRGRQIAASC 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L+ D  +DWR G  +F   L+D D+ SN G WQ+ A  G D     R FN   Q  ++DP
Sbjct: 348 LIHDFGIDWRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRAFNIDKQTAQYDP 406

Query: 421 QGTFIRHW 428
            G F   W
Sbjct: 407 DGVFTHKW 414


>gi|114798846|ref|YP_761758.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114739020|gb|ABI77145.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
           neptunium ATCC 15444]
          Length = 536

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 122/497 (24%), Positives = 210/497 (42%), Gaps = 49/497 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            VH++W + DLR+ D+ AL AA   S A ++ ++I  P  W     S RQ  F+  SL +
Sbjct: 9   GVHVIWFKRDLRVHDHAALAAAV-ASGAPILPLYIFEPGYWALPEHSRRQFDFVRDSLEE 67

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           +  +L  +G        S    +I+   +   +  +  +  + +  +     RD+ + + 
Sbjct: 68  LDAALKARGTKLVIRMGS----AIDVFSALHQKHGIAAIHAHEETGLQWTFDRDRAVRRW 123

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            ++  I      S+   P + +  ALQ    +         N  +A +R   + A     
Sbjct: 124 ARNAGI------SLREQPQNGVQRALQSRDGWA--------NQWEAFMRRPRLVAPEALK 169

Query: 187 PVTPSN----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240
           P    +    +P+ F             G   A+  LR F + +   Y +    P  A  
Sbjct: 170 PSAADSEEWPLPQDFGLGADDCPQRQKGGRMAAVDCLRSFLESRGRTYQKSMSSPLTAAD 229

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKE------EFVDLLIKPKSGAFSWLNELIWREFYRHL 294
             S+LSP+L+ G +S R+ W   ++         D       G+F  ++ L W   +   
Sbjct: 230 ACSRLSPHLAFGTVSIREAWQAAQKAQHEHGRSGDTGFAASIGSF--ISRLQWHCHFIQK 287

Query: 295 MAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +    S+   +   P  + +  E       L AW +G TGFP +DA MR L   GW++ R
Sbjct: 288 LEDQTSI-ESRNLHPGYDGLRPEPLAGDPRLAAWIEGRTGFPFLDACMRSLRETGWLNFR 346

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +R +   F    L +DW+   E+  +   D +   +    Q  ++T   + P  RI+NP 
Sbjct: 347 MRAMVMGFASHHLWLDWKQPAEHLAALFTDFEPGIHYPQAQMQSATTGMNTP--RIYNPV 404

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHK 464
            Q +  DP G FIR W+PEL+ +P +++HAP  W             L   YP+ IVDH 
Sbjct: 405 KQSQDQDPDGAFIRRWVPELSGLPAEWLHAP--WEAPASVRARAGIVLGQTYPMRIVDHM 462

Query: 465 KACHHTLNQYYAAKKQS 481
            A     ++ +A +K++
Sbjct: 463 AAAEEARSRIFAVRKRA 479


>gi|110667407|ref|YP_657218.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
 gi|109625154|emb|CAJ51573.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
          Length = 719

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 143/313 (45%), Gaps = 50/313 (15%)

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-LRKFCKEKVYYY 230
            D   L +P    TG +TPS + +   +       M P G   A    LR F  +++  Y
Sbjct: 270 GDTTQLTIP----TG-ITPSVVEKT--HKINPTKKMVPTGTHRAATTQLRAFV-DQIGSY 321

Query: 231 VEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
                 P  A  GTS LSPY + G+LS RQ       ++V+       G   + + LIW 
Sbjct: 322 PSNISAPQDARTGTSGLSPYFNFGLLSIRQV-----HQYVNNNTPECRGRRMFTSRLIWN 376

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSH---LLQAWKQGYTGFPIIDAA 339
             Y   +A +           WT++       E+N D H   L+ AWK G TGFP++DA+
Sbjct: 377 CHYNQKLADWAG---------WTDRAVNPAFEEFNADRHNPALVDAWKHGQTGFPMVDAS 427

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR L   GW++ R+R +  S     L   W IG ++F   L+D D+  N    QW +  G
Sbjct: 428 MRCLRETGWLNFRMRAMCVSIFTHILQQPWWIGADWFHHHLIDSDVGINYT--QWQSQAG 485

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL----- 454
               P  R++NP  Q +  D  G +I  W+PEL+++P Q+   P    ++  L++     
Sbjct: 486 LIGKPSQRVYNPRKQVRDHDSDGEWITKWVPELSDLPAQHFPRP----ERTPLAVQSECN 541

Query: 455 -----NYPLPIVD 462
                +YP P+VD
Sbjct: 542 VIIGDDYPRPVVD 554


>gi|254452890|ref|ZP_05066327.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
           antarcticus 238]
 gi|198267296|gb|EDY91566.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
           antarcticus 238]
          Length = 445

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 137/304 (45%), Gaps = 25/304 (8%)

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLSPYL 249
           N P F + P   +      G + A+  LR F   +   Y+     P       S+LS +L
Sbjct: 112 NDPIFGNVPIGKVQKG---GRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAHL 168

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----SWLNELIWREFYRHLMAFYPSV--- 301
           + G LS R+    + +    L    ++ +F     ++ + L WR  +   +   P +   
Sbjct: 169 AWGTLSVREVAQSIVKRRAQL-SPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPEIETH 227

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           CM   F     ++  + D H  QAW  G TG+P +DA MR L   GW+  R+R +  SF 
Sbjct: 228 CMHPAFEGL--RVGEHNDLHF-QAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFA 284

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              L +DWR+  E+      D +   +    Q    +G   +   R++NP  Q    DP+
Sbjct: 285 SYQLWLDWRVTGEHLARLFTDYEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSMEHDPK 342

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIVDHKKACHHTLNQYY 475
           GTFIR W+PEL +VP ++IH P  W    +D  D +L  +YP P+VD   +      Q  
Sbjct: 343 GTFIRKWVPELKSVPDEFIHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQIS 402

Query: 476 AAKK 479
           A +K
Sbjct: 403 AIRK 406


>gi|269961334|ref|ZP_06175699.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833885|gb|EEZ87979.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 462

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 196/455 (43%), Gaps = 75/455 (16%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHF 60
           ++ L W  NDLR+ DN  L  A    D  +       ++ ++    Q  + G + +Q  F
Sbjct: 16  TIGLYWFTNDLRLHDNPLLLRASAEVDLLICIYCYPKVSSYLKQYAQEPEFGFAKQQ--F 73

Query: 61  IYASLLQVQKSLS---QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           +  SL  +  SL+   Q+  V   H       + + L        VT L+ +     +E 
Sbjct: 74  LDESLHCLNLSLNALNQRLQVVDLHPYQAIKHAADKLG-------VTHLYADAVAGSDEQ 126

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKAL----IQNLVQA 172
                ++    H  + +S   S+       L   L+ +   +T FRK +    +   V+A
Sbjct: 127 DVVDNIQAEAPHLAVIQSEVRSLFCVED--LPFELEALPDTFTKFRKKVEKLALAEPVEA 184

Query: 173 DLR------SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKE 225
             R       L +P + LT  V PS               +F  GE+  L H  + F   
Sbjct: 185 VTRLPALPDGLALPTLSLTRDVQPS---------------LFTGGERAGLEHCRQYFAST 229

Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---W 281
               Y + R+ +  +  +++ SP+L+ G LSP+  +  LK        +  +GA     W
Sbjct: 230 LASEYKQTRNGLDGMDYSTKFSPWLAHGCLSPKTIYAMLKR------YEAANGANDSTYW 283

Query: 282 LN-ELIWREF-------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
           +  EL+WRE+       Y+  +  +  +    P   +         +H  Q WK+G T F
Sbjct: 284 IYFELLWREYFYWYARRYKRQLFRFGGIQNQAPLTSFY--------AHRFQQWKKGETPF 335

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           PI++A M QLN  G+M NR R + AS LV +L ++WR G  YF SQL+D D+ASN G WQ
Sbjct: 336 PIVNACMHQLNETGYMSNRGRQLVASCLVHELGLEWRYGAAYFESQLVDYDVASNWGNWQ 395

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           + A  G D     R FN   Q + +DP   FI  W
Sbjct: 396 YLAGVGADPRGS-RQFNLEKQTEMYDPHMEFIDRW 429


>gi|91224260|ref|ZP_01259523.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
 gi|91191171|gb|EAS77437.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
          Length = 422

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 136/287 (47%), Gaps = 37/287 (12%)

Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNA 215
            +T FRK      V+    S P  +IR   P+    N+P    Y F A    F  GE   
Sbjct: 125 TFTQFRKQ-----VEGLDISRPHESIRSLPPIPLGVNLPSVTAYYFDA-KAAFHGGESRG 178

Query: 216 L-HILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
           L H  + F       Y + R+ +  +  +++ SP+L+ G +SP+  +  LK        +
Sbjct: 179 LEHCRQYFASTLASEYKQTRNGLDGMDYSTKFSPWLAHGCVSPKTIYAMLKR------YE 232

Query: 274 PKSGAFS---WLN-ELIWREFY--------RHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            ++GA     W+  EL+WRE++        R L  F   +    P   +         +H
Sbjct: 233 AENGANDSTYWIYFELLWREYFYWYARRHKRQLFRF-GGIQNRAPLTSFY--------AH 283

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             Q WK+G T FPI++A M QLN  G+M NR R + AS LV +L +DWR G  YF SQL+
Sbjct: 284 RFQQWKKGETPFPIVNACMHQLNETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLV 343

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           D D+ASN G WQ+ A  G D     R FN   Q + +DP   FI  W
Sbjct: 344 DYDVASNWGNWQYLAGVGADPRGS-RQFNLEKQTEMYDPHMEFIDRW 389


>gi|325131015|gb|EGC53742.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           OX99.30304]
          Length = 433

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 191/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E       + R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G   +     Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FVAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W  AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     + DP GTF+R  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412


>gi|320104815|ref|YP_004180406.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
 gi|319752097|gb|ADV63857.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
          Length = 559

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/479 (22%), Positives = 202/479 (42%), Gaps = 34/479 (7%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W++ D+R+ DN+AL  A     + V+ VF+  P    Q   SA        +L ++++ +
Sbjct: 23  WIKRDMRLADNEALTRAV-AEHSLVLPVFLHEPTLLAQAETSAMHWDAWTQALAELRRRV 81

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF-YNRQYEINEVRRDKLLEKRLQHRV 131
            + G              + W ++    + +  +F +   Y   E+      ++    R 
Sbjct: 82  RRAGAEIL----------VGWGEAVESFEAIRAVFPFTHIYAHEEIGGAFTFQRDRAVRA 131

Query: 132 ICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTGPVT 189
            C+    +V+  P  S+    +   ++   +R  ++      ++ ++P+ + +R     T
Sbjct: 132 WCRRRGVTVIERPQSSVQRGGVDRDRMGELWRSRIVAPPALPEVAAIPLTSELRTWAATT 191

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247
           P+  P+     ++       + E +A   L  F +++   Y      P  A +  S+LS 
Sbjct: 192 PTAPPQAEVIGWRRPSEWQNVNESSAWATLDSFLEQRGRGYSGGISSPNTAFESGSRLSV 251

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKP--------KSGAFSWLNELIWREFYRHLMAFYP 299
           +L+ G LS RQ +   +    +L   P        +    S+L  L WR+ +   +   P
Sbjct: 252 HLAWGTLSLRQAYQATQARLRELERDPAAHDATRWRRSLRSFLARLHWRDHFIQRLETEP 311

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   +P  P  + +E   D  LL+ W++G TGFP++DA MR L T G+ + R+R +  S
Sbjct: 312 EMEF-RPLHPAYDALEAEDDPELLERWRRGLTGFPLVDAVMRCLATTGFCNFRMRAMAVS 370

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
                L +DWR    +      D +   +    Q  A  G   +   R +NP  Q    D
Sbjct: 371 VACHALRLDWRTIHPHLAGVFRDYEPGIHFSQLQMQA--GVVGINTIRSYNPFKQALDHD 428

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYY 475
           P   FI  W+PEL ++P + IH+     D++        YP P+VDH+      + + Y
Sbjct: 429 PDARFITRWIPELRDLPAERIHS----FDQDPPRSSETTYPPPVVDHRTRTRAWVERLY 483


>gi|329902812|ref|ZP_08273260.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548607|gb|EGF33264.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 508

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 113/492 (22%), Positives = 207/492 (42%), Gaps = 41/492 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ +VW + DLR+ D+ AL  A   +   V+ +++  P  W    +S +   F+  SL 
Sbjct: 1   MTLSVVWFKRDLRLHDHAALTLAA--ARGPVLCLYVIEPAMWAAQDVSNQHYQFLLESLS 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  +L+++G            + ++ LD+   Q  +  LF +      E   D   ++ 
Sbjct: 59  ELDAALARRGGCLHV----AVGEVVDILDALLRQSPIADLFAH-----EETGNDISYQRD 109

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L     C++            +   LQ    +    +A   ++ QA    LP+P +    
Sbjct: 110 LAVGRWCRTHQVGWHESAQFGVVRRLQDRDKWQRHWEA---HVAQA---CLPIPVLAFAA 163

Query: 187 -PVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEKVYYYVEQRDIP--AI 239
            P+TP+ +P          DP  P+    G + A+ +L+ F  ++   Y      P  A 
Sbjct: 164 CPLTPAVLPSSDALGLAPDDP--PLRQRGGRRQAVAVLQSFLLDRSGQYRGGISSPLSAP 221

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI---KPKSGAFSWLNELIWREFYRHLMA 296
              S+LSPYL+ G LS R+  +  +++   +     + K+G   + + L W   +   + 
Sbjct: 222 TACSRLSPYLAFGALSMREIVHATRKQLATMPATESRRKAGLTGFTSRLYWHCHFIQKLE 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P++        +    E + +     A   G TG+P++DA +  L   GW++ R+R +
Sbjct: 282 SEPALEYRNLHRGYDGLREGDWNQQHFDALVAGRTGWPLVDACVEMLRQTGWLNFRMRAM 341

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             S     L + WR    +   Q LD +   +    Q  + T   +VP  RI+NP  Q  
Sbjct: 342 LVSVAAYPLWLHWRPVGLWLARQFLDYEPGIHWSQLQMQSGTTGINVP--RIYNPIKQAH 399

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY--------PLPIVDHKKACH 468
             DP G F+R WLP +  VP  ++  P  W    +L   Y         +P+VD ++A  
Sbjct: 400 DHDPHGHFVRRWLPAMRKVPDAWLFEP--WRMPAELQARYGVVVGHDIAMPLVDLEQATR 457

Query: 469 HTLNQYYAAKKQ 480
              ++ +  + Q
Sbjct: 458 LAKDKLFGLRAQ 469


>gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14]
          Length = 616

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 147/344 (42%), Gaps = 62/344 (18%)

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC- 223
           LI  ++      L +PA+ + G +TPS     +             GE  AL  L  FC 
Sbjct: 277 LIDTIIGKAYGLLTIPALDVFGYLTPSQHSFLYG------------GESVALERLEVFCS 324

Query: 224 -KEKVYYYVEQRDIPAIQ---GTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKS 276
            +E+V  + + +  P       T+ LSPYL+ G LS R  + R+   F+ L    +   S
Sbjct: 325 IEERVGCFEKPKTSPVQMNPPSTTALSPYLAFGCLSVRALFYRIM--FIQLNFSSVSKGS 382

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQ--------- 324
            A S   +L+WREF+       P     +   P   KI W   N+DS  L          
Sbjct: 383 PATSLDGQLMWREFFYCYAHNVPEFASPEQN-PLCRKIGWRLQNEDSDPLTTHSSSKEED 441

Query: 325 --------AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEY 375
                    W +G TGFP IDA MRQ+ T GW H+  R   A FL + DL + W  G + 
Sbjct: 442 LVASEQFTCWARGKTGFPWIDAIMRQILTEGWAHHLARHAVACFLTRGDLYISWIHGAKL 501

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ-------GTFIRHW 428
           F   L+D D A N G W W +++      +F  F        F  Q         +I+H+
Sbjct: 502 FQELLIDMDWAINVGNWLWVSASC-----FFHDFQNVFSPSTFPQQYYNEQEAAIYIKHY 556

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKA 466
           +PEL N+P +Y+  P         S+N      YP PI+DH  A
Sbjct: 557 IPELQNMPDRYVFEPWRAPLNIQKSVNCLIGKDYPFPILDHHVA 600



 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 16/187 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLR+ DN AL+AA   +D+  +   +    +       A +  F+   L  +  
Sbjct: 75  LLWFRRDLRLHDNGALHAAIQATDSDTVLFPVYILHRPENKKCGAVRFQFLLECLEDIDT 134

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQH 129
           SL QK    Q        ++I +L       ++T L + +      ++RD K++      
Sbjct: 135 SLRQK----QSRLLVFCGEAISFLTVLMQAWKITDLIFEKFQLPYAIKRDEKIMSMAQTL 190

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +   +   + L  P  I+   L   +V   F     QN +   +  +P P + L   +T
Sbjct: 191 HINVTTVSGATLHDPKEIVT--LNHNQVPLDF-----QNFLDI-VSDMPQPRLPL---LT 239

Query: 190 PSNIPRF 196
           PS +P F
Sbjct: 240 PSQLPSF 246


>gi|219119456|ref|XP_002180488.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP
           1055/1]
 gi|217407961|gb|EEC47896.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP
           1055/1]
          Length = 515

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 209/510 (40%), Gaps = 52/510 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++WL+ DLR+TD+  L A     D  V  +++  P+Q  +  +      F    L+ +  
Sbjct: 3   VIWLKRDLRLTDHGPLAAVAQRKDRDVCILYLYEPDQLAEPSVHGSHVLFANEGLVDLDT 62

Query: 71  SLSQKGIVFQYHQCSNFD----------DSIEWLDSYCLQQRVTKLFYNRQY-EINEVRR 119
            LS    +      +             + I+ L +   Q+++ +L  + +   +    R
Sbjct: 63  KLSNLRRLSSGQNAAASKSFGSLTVCHCEVIQALQAIHAQKKIARLLAHMETGHMRSYAR 122

Query: 120 DKLLEKRLQHRVI----CKSFDDSVLLPPGSILNHALQMYKVYTPFRK--ALIQNLVQAD 173
           DK + K  + R I          S  L      +  LQM+     +R   AL  N+V  D
Sbjct: 123 DKRVRKWCRDRKIPFVELPQTGVSRCLTNRDDFHRNLQMFLKKKQYRTPTALECNIV-ID 181

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMF--PIGEQNALHILRKFCKEKVYYY 230
           L         L G           + P  Q +D       GE  AL ILR F   +   +
Sbjct: 182 LE--------LPGRSMEPLFAELIEIPLEQRVDRTERQQGGETTALEILRSFLYHRGVGF 233

Query: 231 VEQRDIPAIQGTS--QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-- 286
            +    P    TS  +LSPYL+ G +S R     L+E    L  +       WL      
Sbjct: 234 SKGISSPNSSWTSCSRLSPYLTWGQISLRHVVQALQERQAQLKTQKCRSDDRWLRSFTAF 293

Query: 287 -----WREFYRHLMAFYPSVC---MGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIID 337
                WR  +   +   P +    +   F P   +  +WN+  +  QAW  G TG+P++D
Sbjct: 294 SSRVHWRSHFIQKLESEPEMEQRDVNAAFQPLRRQPGDWNECYY--QAWSTGNTGYPMMD 351

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           A MR L+  GW++ R+R +  SF   +L +DW     +     LD +   +    Q    
Sbjct: 352 ACMRCLHRHGWVNFRMRAMLVSFASYNLWLDWHRFAPHLARVFLDYEPGIHYP--QIQMQ 409

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP----HSWLDKNDLS 453
           +G   +   R ++ T QGK  DP+G F+R ++PEL +VP  YIH P     S   K  + 
Sbjct: 410 SGTTGINALRCYSVTKQGKEHDPRGIFVRKYIPELQSVPNDYIHEPWKMSKSMQAKCGVH 469

Query: 454 L--NYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +  +YP PIV+ ++       +  A ++++
Sbjct: 470 IGEHYPAPIVNEQETAKSAKERIAAVRRRN 499


>gi|308388508|gb|ADO30828.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis alpha710]
          Length = 433

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 190/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL  A       VI ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G   +     Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W  AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     R DP GTFI+  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412


>gi|325207317|gb|ADZ02769.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           NZ-05/33]
          Length = 433

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 190/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL  A       VI ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G   +     Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W  AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     R DP GTFI+  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412


>gi|296314842|ref|ZP_06864783.1| deoxyribodipyrimidine photolyase [Neisseria polysaccharea ATCC
           43768]
 gi|296838342|gb|EFH22280.1| deoxyribodipyrimidine photolyase [Neisseria polysaccharea ATCC
           43768]
          Length = 430

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 128/461 (27%), Positives = 190/461 (41%), Gaps = 78/461 (16%)

Query: 3   ATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           AT A +++ LVW R +LRI DN AL AA       +I ++I   E       + R++ F 
Sbjct: 7   ATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAET-----DNPRRAAFY 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S  ++ + L+ +GI   Y + S        L    ++  +  +  +  +   +   D 
Sbjct: 61  RQSAAELAQGLAGRGIPL-YTEVSP-----AGLVRLAVRLNIRAVIADESHTFADKLTDN 114

Query: 122 LLEKRLQHRVICKSF--DDSVL----LPPGSILNHA---------LQMYKVYTPFRKALI 166
            L   L    I  +F  D SV     LPP +   H          L  +    P    + 
Sbjct: 115 ALWHELDKHGIRLTFVNDRSVFDQTDLPPDNGTAHTDFNRYRKAWLDCFSKQPPAGSDIF 174

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
               Q    +LP P         P+ +      P          GE  A    R+F ++ 
Sbjct: 175 STYRQPFPENLPAP--------QPAALSDSIFLPQNG-------GETAAWRQWRRFLEQA 219

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +       +W + +I
Sbjct: 220 DSYSV-LKDFPSRKNTSLMGAYLSAGCISPRL----LARESLERRLN------AWADNII 268

Query: 287 WREFYRHLMAFYP--SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
            R+F+  L   +       G P           + +  L  W+QG TG PIIDAAMR L+
Sbjct: 269 RRDFFLQLALQHADDGPSDGNP-----------EHTLRLTLWQQGQTGIPIIDAAMRCLH 317

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AAS       
Sbjct: 318 KTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAAS------- 370

Query: 405 YFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
             R   P I     + DP GTF+R  +PEL ++P   IH P
Sbjct: 371 --RHTYPDIAAAAHKTDPDGTFVRRHIPELAHLPAAVIHTP 409


>gi|221134513|ref|ZP_03560818.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999]
          Length = 441

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 194/456 (42%), Gaps = 56/456 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDA-KVIAVFIAT---------PEQWRQHGISAR 56
           M+  L W  +DLR+ DN  L       D    I +F A            Q+ Q  +   
Sbjct: 1   MNNGLYWFEHDLRLADNLPLQQTIAQIDQLHCIYIFNAADFSTTKKKGAGQFNQRHMGQH 60

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  FI  +L  +Q  L   G     +     D  IE L++      + K F+   YE N 
Sbjct: 61  RYRFIRQALDDLQSQLHTFGQQLHIYYGEPLD-IIEQLNTQFNFTHIGKHFHTGVYERNL 119

Query: 117 VRRDKLL--EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +   K+    K + +      +D   L  P SI N    +  V++PFR+  ++   +A L
Sbjct: 120 ISALKIQYPNKTIINTNSYTLYDIDDL--PMSIEN----LPDVFSPFRRK-VEKFCEARL 172

Query: 175 --RSLPV--PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF--CKEKVY 228
              +LPV  P + +     P  +P       Q  D       +    ++      KE+++
Sbjct: 173 PDNALPVSFPPVVVAEQNMPDELP-----AIQVCDKKLLAKNETVQRLIGGELKAKEQMH 227

Query: 229 YYV----------EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
           +Y           E R+ +   + +S+LSP+L+ G +SPRQ    + E   +        
Sbjct: 228 HYTYGTQALSEYKETRNGLEGWEFSSKLSPWLAAGCISPRQVAAAITE--YEAQHGANDS 285

Query: 278 AFSWLNELIWREFY-----RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
            +    EL+WREF+     +H  A Y    + +      +      +  + + W  G T 
Sbjct: 286 TYWLFFELLWREFFQWQQLKHGKALYHRNGIQQ------KSPRGFHNKKVFEDWVNGDTA 339

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +PII+A MRQL   G+M NR R + AS  + +L +DW+ G  YF   L+D D ASN G W
Sbjct: 340 YPIINACMRQLKYTGFMSNRGRQLVASCFIHELGLDWQYGAAYFEEALIDFDPASNWGNW 399

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           Q+ A  G+D     R FN   Q + +DP G FI +W
Sbjct: 400 QYLAGVGSDPRG-CRQFNLNKQTQTYDPHGEFIGYW 434


>gi|88798414|ref|ZP_01113999.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
 gi|88778854|gb|EAR10044.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
          Length = 433

 Score =  118 bits (295), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 194/450 (43%), Gaps = 37/450 (8%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH---FIYASLLQV 68
           +W   D R+ DN AL  A    +   + V      Q R++       H   F+  SL ++
Sbjct: 1   MWFTQDQRLDDNPALRLAAEADEMLCVFVVEQGWFQSRRYQYPQMGPHRWVFLQLSLSEL 60

Query: 69  QKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + L   G  ++  Y Q       +E +     +  + ++   R    +E+R+ + LE +
Sbjct: 61  NQRLQLHGQRLLVVYGQAE-----VE-IGRLVERYDINRVVRARSPGTDELRQWRWLESQ 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                 C++ D + L     +   +      ++ FR+ L +  V   + ++P     +T 
Sbjct: 115 FPETEWCQA-DAATLFEDDQVAGLSRSWPMSFSAFRR-LAERWVVPAVTAMPQLPNTITQ 172

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ---GTS 243
            ++   +P +     +A   MF  GE  AL  L  +     Y    +RD  AI     +S
Sbjct: 173 QISQLTLPDWLPNA-RASHSMFDGGESEALRHLDCYLASD-YPQTYKRDRNAIDDWDSSS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL-------MA 296
           ++SP+L+ G LS R+   +L E   D       G      EL+WRE+++ L       + 
Sbjct: 231 KMSPWLNAGNLSARRLKQKLDE--YDQQHGASDGTHWLFVELLWREYFQWLAQSIGTKLF 288

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +  +   KP   +         S   + W++G T + I++A MRQL   G++ NR R I
Sbjct: 289 HFQGLSEHKPLTSFY--------SDRFRNWREGNTPWAIVNACMRQLKETGYLSNRGRQI 340

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS LV +L +DWR G  +F   L+D D+ASN G WQ+ A  G DS    R FN   Q +
Sbjct: 341 AASALVNELALDWRYGAAWFEYCLVDYDVASNWGNWQYIAGVGTDSRG-GRHFNIDKQTE 399

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
            FD  G+F   W  +    P   +  P  W
Sbjct: 400 LFDADGSFRARWAADAEPQPLDTLD-PTGW 428


>gi|254454708|ref|ZP_05068145.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238]
 gi|198269114|gb|EDY93384.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238]
          Length = 322

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 127/286 (44%), Gaps = 24/286 (8%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           G + A+  LR F   +   Y+     P       S+LS +L+ G LS R+    + +   
Sbjct: 5   GRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAHLAWGTLSVREVAQSIVKRRA 64

Query: 269 DLLIKPKSG------AFSWLNELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKD 319
            L             AF   + L WR  +   +   P +   CM   F     ++  + D
Sbjct: 65  QLSPDENKSFGRNLTAFG--SRLAWRCHFIQKIEDQPEIETHCMHPAFEGL--RVGEHND 120

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
            H  QAW  G TG+P +DA MR L   GW+  R+R +  SF    L +DWR+  E+    
Sbjct: 121 LHF-QAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQLWLDWRVTGEHLARL 179

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
             D +   +    Q    +G   +   R++NP  Q    DP+GTFIR W+PEL +VP ++
Sbjct: 180 FTDYEPGIHYS--QLQMQSGVTGINTMRVYNPIKQSMEHDPKGTFIRKWVPELKSVPDEF 237

Query: 440 IHAPHSW----LDKNDLSL--NYPLPIVDHKKACHHTLNQYYAAKK 479
           IH P  W    +D  D +L  +YP P+VD   +      Q  A +K
Sbjct: 238 IHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQISAIRK 283


>gi|86131288|ref|ZP_01049887.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
           photolyase subfamily [Dokdonia donghaensis MED134]
 gi|85818699|gb|EAQ39859.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
           photolyase subfamily [Dokdonia donghaensis MED134]
          Length = 494

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 212/510 (41%), Gaps = 72/510 (14%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           K+ + ++VH  W + DLR+ DN+ L+ A  +S+  VI ++I  P        S R  +FI
Sbjct: 3   KSKSHITVH--WFKRDLRLQDNENLWQALQHSEP-VILLYIFEPSLLDDEHYSERHFNFI 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ--YEINEVRR 119
             SL  +Q  L             N+D  I       +Q  V  +F   Q  Y I  V  
Sbjct: 60  KESLQDLQSRLE------------NYDTKI-----LVVQGEVIPVFKKLQQHYTIKRVYS 102

Query: 120 --DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--VQA--- 172
             +  + K     +  K +  S  +     +N+ +         R++L   +  VQ    
Sbjct: 103 HVETGIRKTYDRDIAFKVYQQSQDIRWIQFINNGV---------RRSLSNRVGWVQGWEW 153

Query: 173 ---DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI-------GEQNALHILRKF 222
              + + + VP    +G +        F+  F  +    P        G    L     F
Sbjct: 154 WMTEPQRIFVPQ---SGDLVTKKEVEVFEQYFDCVSLQTPENTAFQKGGTTMGLRYYDSF 210

Query: 223 CKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            ++++  Y      P  A +  S+LSPY++ G LS R+ W R K+       K +   F+
Sbjct: 211 LRDRIKNYNAHISKPLLARKSCSRLSPYIAWGNLSVREVWQRAKKLRQASPYKRQIDGFT 270

Query: 281 ----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
               W    I +      M F   V + + F      ++   +    +AW++G TG+P++
Sbjct: 271 SRLRWSAHFIQKFEMEDTMEF---VSVNRGF----HSLKKVSNPVYAKAWQEGKTGYPLV 323

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DA MR L   G+++ R+R +T SF   +L   W+    +   Q LD +   +    Q  A
Sbjct: 324 DACMRCLVETGYLNFRMRALTLSFFTHNLWQPWQDASAFLARQFLDFEPGIHYPQIQMQA 383

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDK----N 450
             G   +   RI+NP       DP+G FI+ W+PEL  VP  YIH P   S L++     
Sbjct: 384 --GETGINMLRIYNPVKNSYEHDPEGEFIKKWIPELREVPLSYIHEPWTMSLLEQQFCNT 441

Query: 451 DLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +  +YP PIV+ K+   +  +  +  K++
Sbjct: 442 TIGKDYPAPIVNIKETQKYATDTMWKYKER 471


>gi|145354261|ref|XP_001421409.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145354330|ref|XP_001421440.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581646|gb|ABO99702.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581677|gb|ABO99733.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 565

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 134/308 (43%), Gaps = 29/308 (9%)

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK---EKVYYYVEQRDIPAIQGTSQLSP 247
           S++ +  D+    I   + + E  A      F     EK      + DI A    S LSP
Sbjct: 114 SDVDKRLDWA-AGIRAEWTMSESGAASTWEHFASVGLEKFEDDHGRADIVAPAAVSTLSP 172

Query: 248 YLSIGVLSPRQCWNRL--KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY------- 298
           YL  G +SPRQ ++ L  K+   D +   K      L+ + W   YR   A++       
Sbjct: 173 YLRHGQISPRQIYHELATKKMGSDGVEGKK------LSRVFWHRLYRREFAYWQLHNWPE 226

Query: 299 -PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            PS  +   +      +E ++ +  L  W+ G TGFP +DA MR+L   GWMH   RMI 
Sbjct: 227 LPSKSVRGHYENRKAWLEGDEAAVALHRWQTGTTGFPTVDAGMRRLWATGWMHQSERMIA 286

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGK 416
           A+FLV    V W  G ++F+  L+D DLA N+  WQ A  +G D    F     P    +
Sbjct: 287 ATFLVDYCGVHWTHGADWFLDTLVDADLAINSMMWQNAGKSGLDQWDVFAGSLTPDGSSR 346

Query: 417 RFDPQGTFIRHWLPELNNVPTQYI-----HAPHSWLDKNDLSLNYPLP---IVDHKKACH 468
             DP+G  I  W+PEL  +P  ++      A    LD   + L    P   I D + A  
Sbjct: 347 AHDPEGESIARWIPELAALPKGHLRHRPWEASAKQLDAAGVELGSTYPTRMITDLEGARR 406

Query: 469 HTLNQYYA 476
             L+   A
Sbjct: 407 RMLDDVNA 414


>gi|88706143|ref|ZP_01103850.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
 gi|88699537|gb|EAQ96649.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
          Length = 488

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 127/503 (25%), Positives = 200/503 (39%), Gaps = 68/503 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VWL+ DLR+ D+ AL AA   S   V+ ++   PE  +      R   F++ SL  + +
Sbjct: 4   VVWLKRDLRLQDHAALEAAL-GSGLPVVLLYCFEPELLKDPHYDERHWRFVWESLRDMHR 62

Query: 71  SLSQKGIVF------------------QYHQCSNFDDS-IEWLDSYCLQQRVTKLFYNRQ 111
            L                         Q H   +++++ +E   ++   + +  LF  R 
Sbjct: 63  RLEAHPRSLRVLHGDPREIFRVLADEEQLHSVYSYEETGLE--KTFARDRELAALFQERS 120

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
               E   + +   R   +   + +   +  P   + +H L    +   F  A  + L  
Sbjct: 121 IPWKEFPSNGVQRGRKNRKGWNRKWTAQMSAPCHDV-DHRL----IRGSF--ACEERLAA 173

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
             LR LP                R  D  FQ+       GE  A   L  F + +   Y 
Sbjct: 174 FHLRDLP-------------GSWRSPDNQFQSG------GESEAWQTLNDFLERRSPAYA 214

Query: 232 EQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRL----KEEFVDLLIKPKSGAFSWLNEL 285
                P  +    S+LSP+L+ G LS RQ +  L    KE      ++       W    
Sbjct: 215 RNISKPLASRSSCSRLSPFLAWGNLSIRQVYQALRAAQKERGSSRALQAFESRLHWHCHF 274

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           I ++F       +  +  G    P +      +D  L +AW +G TG+P+IDA+MR L  
Sbjct: 275 I-QKFEMECRMEHEDINRGYLHHPRS------RDDALARAWAEGNTGYPLIDASMRCLAA 327

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+++ R R +  SFL   L  DWR+G  +  S  LD +   +    Q  A  G   +  
Sbjct: 328 TGYINFRSRAMLVSFLTHHLWQDWRVGAAHLASLFLDFEPGIHFAQLQMQA--GVTGINT 385

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-----SLNYPLPI 460
            RI+NP  Q +  DP G FIR W+PEL  VPT  IH P        L     S  Y  P+
Sbjct: 386 IRIYNPVKQSEEHDPDGAFIRQWVPELAEVPTPMIHRPWDLSPMEQLIYGLDSKPYAPPV 445

Query: 461 VDHKKACHHTLNQYYAAKKQSLL 483
           VD ++      ++ +A K   ++
Sbjct: 446 VDVRETYRSARDRLWALKDDPVV 468


>gi|325135093|gb|EGC57721.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M13399]
          Length = 433

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 190/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRTVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G         Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPQPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W  AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     + DP GTF+R  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412


>gi|119945274|ref|YP_942954.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
 gi|119863878|gb|ABM03355.1| Deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
          Length = 517

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 206/495 (41%), Gaps = 86/495 (17%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVF----IATPEQWRQHGISARQSHFIYAS 64
           V++VWL+ DLR++D++ L  +  +    +  VF    IA P   ++H        FI+ S
Sbjct: 16  VNIVWLKRDLRLSDHQPLSESIQSGLTLLYYVFEPLLIADPHYDKRHW------RFIWQS 69

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR--VTKLFYNRQYEI-NEVRRDK 121
           +  +   LS     F       F D++  L+   +QQR  +T LF + +  + +   RDK
Sbjct: 70  IEDINTQLS----AFNAQIYVYFGDAVAGLNE--IQQRFNITGLFSHEEVGLLSTFERDK 123

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            + K  + + I      S     G++             +RK +   L Q        PA
Sbjct: 124 AVNKWCKAQNIVWHESAS-----GAVTRGKKNRNNWDKDWRKIMKAELCQ--------PA 170

Query: 182 IRLTGPVTPSNIPRF--FDYPFQAIDP---MFPIGEQNALHILRKFC--KEKVYYYVEQR 234
           +     ++   + R   F  P     P   M   GE  A  +L+ F   + K Y++   +
Sbjct: 171 LSCNTLLSKQCLERLPQFILPVSWSTPDDFMLKGGELWAQKMLQSFLNGRGKNYHFDISK 230

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG----------------- 277
              + +  S+LSPYL+ G +S RQ +       + L+ +P++G                 
Sbjct: 231 PQASRKSCSRLSPYLAWGNISLRQFYQ------IILMKRPQNGWKRPIDALASRLHWHCH 284

Query: 278 ---AFSWLNELIWREFYRHLMAF-YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
               F   +++ WR   R    F YP +  G                  L  WK   TG+
Sbjct: 285 FIQKFESEHQMQWRPVNRAYSNFSYPDLHCGLSV------------ETRLNKWKTAQTGY 332

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           P++DA M  L   G+++ R+R +  SFL   LL+DWR+G  Y     LD +   +    Q
Sbjct: 333 PLVDACMLCLIKTGYINFRMRAMLVSFLCHHLLLDWRLGVSYLAKLFLDFEPGIHYP--Q 390

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWL 447
           +   +G       R++NP  Q    D  G FIR WLP+L+ +P + IH P         L
Sbjct: 391 FQMQSGVTGTNIIRVYNPVKQSLEKDKDGLFIRTWLPQLSELPNEIIHTPWQLSPMEQQL 450

Query: 448 DKNDLSLNYPLPIVD 462
            +  L   YPLPIVD
Sbjct: 451 YQCQLGETYPLPIVD 465


>gi|170059953|ref|XP_001865587.1| cryptochrome-1 [Culex quinquefasciatus]
 gi|167878532|gb|EDS41915.1| cryptochrome-1 [Culex quinquefasciatus]
          Length = 789

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 197/488 (40%), Gaps = 76/488 (15%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +VH  W R  LR+ DN AL     ++ A +  VF+  P       +   +  F+   L  
Sbjct: 52  TVH--WFRKGLRLHDNPALREGLKDA-ASLRCVFVIDPWFAGSSNVGINKWRFLLQCLED 108

Query: 68  VQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           + ++L Q   +  V +           +   + CL       F        +VR   + E
Sbjct: 109 LDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCL------TFEEDPEPFGKVRDHNISE 162

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVY-----TPFRKALIQNLVQADLRSL-- 177
                  +CK  +  V+    S ++H L  YK+         R  L  N  QA + S+  
Sbjct: 163 -------MCKELNIDVI----SAVSHTL--YKLERIIEKNNGRAPLTYNQFQAIIASMDA 209

Query: 178 ---PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
              P PAI L   +  +  P+  D+     D  + +     L    +  K  ++   E  
Sbjct: 210 PPQPEPAITLAA-IGRAVTPQCDDH-----DDKYGVPTLEELGFETEGLKPPIWVGGE-- 261

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                +  ++L  +L       R+ W           IK      S   +L WREF+   
Sbjct: 262 ----TEALARLERHLE------RKAWK----------IKKAYPPLSLHGQLFWREFFYCA 301

Query: 295 MAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
               P+     G P      +I W++++  L  W  G TGFP IDA M QL   GW+H+ 
Sbjct: 302 ATKNPNFDKMAGNPIC---VQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHL 358

Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
            R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P
Sbjct: 359 ARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCP 417

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465
              G++ DP G +IR +LP L N PT+YIH P +  +      +  +  NYPLP+V+H  
Sbjct: 418 VKFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPESVQRAARCIIGKNYPLPMVNHAI 477

Query: 466 ACHHTLNQ 473
           A    + +
Sbjct: 478 ASRANMER 485


>gi|218709609|ref|YP_002417230.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
 gi|218322628|emb|CAV18793.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
          Length = 470

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 131/469 (27%), Positives = 206/469 (43%), Gaps = 67/469 (14%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAV-------FIATPEQWRQHGISARQSHFI 61
           + L    +DLRI DN+ L+ A  + D  +  +       F A   Q + +G  A +  F+
Sbjct: 4   IGLYLFTSDLRINDNQLLHCAAQSVDKLIFVIVEPTLVRFSADLAQEQSYG--AHRQTFV 61

Query: 62  YASLLQVQKSLS-----QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
             S+  ++ +L+     Q+ +V   +     D + + L      Q VT  F N     +E
Sbjct: 62  SQSIDNLELNLNLVRLGQQLVVIHSNHLEP-DAAEQTLSQIIATQHVTHFFANAHCGYDE 120

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL--NHAL--QMYKV---YTPFRKALIQNL 169
            +    L+ R    + C        LP  S L  +H +  ++ KV   +T FRK L+++L
Sbjct: 121 RQLIHSLQSRHPDLITC--------LPHHSTLFDSHEMPFELSKVPSSFTKFRK-LVEHL 171

Query: 170 ----VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNAL-HILRKFC 223
                +  +  LP P      P   + IP F     + A+   +  GE   L H+   F 
Sbjct: 172 DVNGGETVIAHLPPPVTPTLTPAHTTAIPIFSSPNVERAVTNDYLGGEDAGLAHLDNYFA 231

Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +    Y + R+    I+ +++ SP+L++G +SP+     LK+  ++      + +  W+
Sbjct: 232 HDYALNYKQTRNAFDGIENSTKFSPWLALGCVSPKTICRHLKQFEIE---HGSNDSTYWI 288

Query: 283 N-ELIWRE-FYRHLMAFYPSVCMG---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
             EL+WRE FY   ++  PS+      K   P       N +      WK G T +PI+D
Sbjct: 289 YFELLWREYFYWKCLSQGPSLFGNFSDKKLYPPNSSGTSNLN---FAKWKSGNTNYPIVD 345

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           A MRQLN  G+M NR R + AS L+ +L +DWR G  YF SQL+D D+ASN G W + A 
Sbjct: 346 ACMRQLNETGYMSNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAG 405

Query: 398 TGNDSV------------------PYFRIFNPTIQGKRFDPQGTFIRHW 428
             N  V                  P  R F+   Q   +DP   FI  W
Sbjct: 406 ALNSQVNTQDNKQNDAKQPKPKTKPKSRHFDLGKQTNMYDPDHAFINKW 454


>gi|254515582|ref|ZP_05127642.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3]
 gi|219675304|gb|EED31670.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3]
          Length = 488

 Score =  117 bits (293), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 129/491 (26%), Positives = 200/491 (40%), Gaps = 44/491 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWL+ DLR+ D+  L AA   + +  + ++   PE       S R   F++ SL  +++
Sbjct: 4   LVWLKRDLRLQDHAPLRAAI-AAGSSTLLLYCFEPELLSDPHYSDRHWRFVWQSLEDMRR 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF-YNRQYEINEVRRDKLLEKRLQH 129
           SL  +      H C    D  E         ++ +++ Y          RD+ +   LQ 
Sbjct: 63  SLGPQASAL--HVC--LGDPREIFARLLQDGQLQRVYSYEETGLAKTFARDRDVAAMLQS 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQM---YKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             I      S  +  G             ++ TP      Q +         + A  LT 
Sbjct: 119 HGIPWEEFPSNGVQRGRCNRKGWNRDWGRQMNTPCDTTNPQEIYSNAAAGSTLKAFHLTD 178

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
           P      P+ +    +        GE  A   LR F + +V  Y      P  + +  S+
Sbjct: 179 P------PQSWTASHKDFQTG---GESTARRTLRDFLERRVSGYARNISKPLASRESCSR 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G LS RQ +  L E        P     ++ + L W   + H +  +   C  
Sbjct: 230 LSPYLAWGNLSIRQVYQALGE--AQNRGGPSRALQAFESRLHW---HCHFIQKFEMECRM 284

Query: 305 KPFIPWTEKIEWNKDSH-------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +      E I     +H        ++AW QG TG+P+IDA+MR L   G+++ R R + 
Sbjct: 285 E-----HEDINRGYLAHPRAFCEDRVRAWAQGNTGYPLIDASMRCLAATGYINFRSRAML 339

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFL   L  DWR+G  +     LD +   +    Q  A  G   +   RI+NP  Q + 
Sbjct: 340 VSFLTHHLWQDWRVGAAHLAGLFLDFEPGIHFAQLQMQA--GVTGINTIRIYNPVKQSEE 397

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDKNDLSLN---YPLPIVDHKKACHHTLN 472
            DP G FIR W+PEL  VP   IH P   S +++    L+   Y  PIVD  +      +
Sbjct: 398 HDPDGVFIRQWVPELAEVPAPMIHRPWDLSPMEQIIYGLDTKAYSPPIVDVSETYRSARD 457

Query: 473 QYYAAKKQSLL 483
           + +A K  S++
Sbjct: 458 RLWALKDDSVV 468


>gi|261391823|emb|CAX49280.1| deoxyribodopyrimidine photo-lyase (DNA photolyase;
           photoreactivating enzyme) [Neisseria meningitidis 8013]
          Length = 433

 Score =  117 bits (293), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 188/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL  A       +I ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPIIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLYTAA------SPAGLVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G         Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPPPAALSDGIFLPQNS-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKHTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHTD----------DDPSDGNPEHTLRLTLWQQGRTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AA
Sbjct: 313 DAAMRCLHKTGSLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     + DP GTF+R  +PEL ++    +H P
Sbjct: 373 S---------RHTCPDIAAAAHKTDPDGTFVRRHIPELAHLSADTVHTP 412


>gi|149202359|ref|ZP_01879332.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
 gi|149144457|gb|EDM32488.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
          Length = 496

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 118/504 (23%), Positives = 185/504 (36%), Gaps = 85/504 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W + DLR+ D+ AL  A       ++ ++I  P  W +   S RQ  FI   L  +++
Sbjct: 6   ILWFKRDLRVQDHPALTHAARLG--PILPLYIVEPGLWAEPDASGRQYAFICECLESLRE 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF----------YNRQYEINEVRRD 120
            L+  G+           D++  L+       V  L           + R   + E  R 
Sbjct: 64  DLAGLGLTL----VVRVGDAVTVLEDLRAAHAVVHLVSHEETGNLWSFGRDRRVAEWARG 119

Query: 121 KLLE----------KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
           + +           +RL  R   +   D V+  P            V  P +        
Sbjct: 120 QGVRWEEMPQSGVVRRLGSRDAWQGARDRVMRAP------------VLGPVQ-------- 159

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-LHILRKFCKEKVYY 229
              +R L V +  L  P T            +   P+   G + A +  L+ F   +   
Sbjct: 160 --GVRGLAVASDDLPAPAT---------LGLKDACPLRQKGGRGAGMRALQSFLSTRGES 208

Query: 230 YVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN---- 283
           Y      P    +  S++SP+L+ G LS       L+E      + P      W      
Sbjct: 209 YQRAMSSPLHGARACSRISPHLAFGTLS-------LREAVQTGAMAPGGRGADWARSMRS 261

Query: 284 ---ELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
               L WR+ +   +   P +   C+   +     +     D+  L AW  G TG P +D
Sbjct: 262 FQARLAWRDHFMQKLEDEPEIERRCLHPAYEGLRPR---EADALRLAAWSTGETGLPFVD 318

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAA 396
           A MR L   GW++ R+R +  +     L +DWR           D +   +   W Q   
Sbjct: 319 ACMRSLLATGWLNFRMRSMLMAVASYHLWLDWRSTGPVLAQAFTDYEPGIH---WPQVQM 375

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLN 455
            +G   +   RI+NP  QG   DP G F R WLPEL  VP  Y+  P  W +    L   
Sbjct: 376 QSGTTGMNTIRIYNPVKQGLDQDPTGEFTRRWLPELAQVPDAYLQRPWDWPEAERLLERG 435

Query: 456 YPLPIVDHKKACHHTLNQYYAAKK 479
           YP PIVD  +A        +A ++
Sbjct: 436 YPAPIVDPVEAARVAREAVWACRR 459


>gi|254506555|ref|ZP_05118696.1| FAD binding domain of DNA photolyase protein [Vibrio
           parahaemolyticus 16]
 gi|219550428|gb|EED27412.1| FAD binding domain of DNA photolyase protein [Vibrio
           parahaemolyticus 16]
          Length = 492

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 203/449 (45%), Gaps = 38/449 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S++LVWL+ DLR+TD++ L+ A  +     + ++I  P        S R   F+  SL  
Sbjct: 3   SINLVWLKRDLRLTDHQPLHDAIQDGTPFAL-IYIFEPLLLNDPHFSDRHWRFVLQSLDD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126
           + ++L+  G          F D+ +  +S      + K+F +++  +N    RDK L   
Sbjct: 62  INETLTPFGTSVHI----LFGDATQCFESLAHHYSIGKVFSHQEIGLNNTFERDKRLAAW 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHA---LQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
                I   + +S     G++L  A    Q  + +  F +A + +      R + +  I 
Sbjct: 118 FTSNGI--QWHES---QHGAVLRGAKTRQQWDERWHTFMRAPLADPQLDHARWVNLEGIE 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--G 241
                +P       ++  +A + M   G Q A   L  F + +   Y  +   P++    
Sbjct: 173 PHMRFSPP-----LEWQGKA-NGMQTGGSQLAWKTLDDFFRRRGKDYYRRISSPSLSRSA 226

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            +++SPYL+ G +S R+ +  L + +   L   K  A +  + L W   + H M  + S 
Sbjct: 227 CTRISPYLAWGNVSLREVYQYLLQHWQ--LKGFKRSAIALSSRLHW---HCHFMQKFESE 281

Query: 302 ------CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                 C+ + + P   +    KD  +L+AWK G TG P++DA MR L+  G+++ R+R 
Sbjct: 282 VEMEFRCLNRGYEPLIVQST-RKDEMMLKAWKTGTTGLPLVDACMRCLHHTGYLNFRMRA 340

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414
           +  S L   +  DWR G  +     LD +   +   +Q  A  TG ++V   RI+NPT Q
Sbjct: 341 MLVSVLCHHMNQDWRDGVTHLAQLFLDFEPGIHYPQFQMQAGVTGINTV---RIYNPTKQ 397

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
            +  DP G FI+ WLPEL  +P   +  P
Sbjct: 398 AQEHDPDGHFIKKWLPELAALPAPLLFEP 426


>gi|113953044|ref|YP_731210.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           CC9311]
 gi|113880395|gb|ABI45353.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           CC9311]
          Length = 504

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 126/495 (25%), Positives = 205/495 (41%), Gaps = 57/495 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW + DLR+ D+K L  A       V+ +++  PE W+Q   S RQ  F   SLL
Sbjct: 1   MALQLVWFKRDLRVKDHKPLQQALLR--GPVLPLYVVEPELWQQQDASERQWLFCRESLL 58

Query: 67  QV--------QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            +        Q  L + G V +  + ++    +E L S+  ++      Y R   +    
Sbjct: 59  DLRLALAALGQPLLVRSGDVVEVFERAHRQFGLEALWSH--EETGNGWTYQRDQRVALWC 116

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           R        QH +  K       +P   ++       +    +   + + +  +    L 
Sbjct: 117 R--------QHGIAWKE------IPQFGVIRRLRSRTRWAKRWEAQMAEPITPS---PLG 159

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRD 235
           +P+I         + P    +P  A DP       G   AL  L  F + +   Y     
Sbjct: 160 LPSIEGIDAGVIPDCP----HPTLASDPCPHRQSGGRSMALLELDDFLEHRAPGYARSIS 215

Query: 236 IP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P  A  G S+LS YL+ G LS       ++E           G  S+ + L W   +  
Sbjct: 216 SPNTAFTGCSRLSAYLTWGCLS-------MREVIQTSRGFSGRGISSFESRLHWHCHFIQ 268

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +   PS+   + F P+   +    D  LL AW +G TG P +DA MR L   GW++ R+
Sbjct: 269 KLEAQPSIEF-EDFHPFMRGLRCTNDQRLL-AWAEGRTGVPFVDACMRALRAHGWINFRM 326

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPT 412
           R +  SF    L + WR    +   Q +D +   +   W Q    +G+ ++   R++NP 
Sbjct: 327 RAMLMSFASYHLWLPWRDSGLHLARQFVDYEPGIH---WSQCQMQSGSTAINTVRVYNPI 383

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466
            QG+  D  G FIR W+PEL+ V   Y+H P              L ++YPLP+V+   A
Sbjct: 384 KQGQDHDLNGEFIRTWVPELHLVSNVYVHEPWKLSTAAQRQAGLQLGVDYPLPMVEPALA 443

Query: 467 CHHTLNQYYAAKKQS 481
                 + +A +++S
Sbjct: 444 AREAKQRIWAIRERS 458


>gi|325137115|gb|EGC59711.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M0579]
          Length = 433

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 190/469 (40%), Gaps = 91/469 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL  A       VI ++I   E       + R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDDAET-----DNPRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI   Y   S  +     L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPL-YTAASPAE-----LVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G         Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------SAPQPAALSDGIFLPQNG-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +S R     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKNTSLMGAYLSAGCISSRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPII 336
             +W + +I R+F+  L   +             +  + N +  L L  W+QG TG PII
Sbjct: 265 --AWADNIIRRDFFLQLALQHAD----------DDPSDGNPEHTLRLTLWQQGQTGIPII 312

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  LR ++A F    L +  R GE +F  QL D D+A N G W+ AA
Sbjct: 313 DAAMRCLHKTGGLHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDVAINQGNWRLAA 372

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     R DP GTFI+  +PEL ++    +H P
Sbjct: 373 S---------RHTYPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 412


>gi|325518601|gb|EGC98260.1| deoxyribodipyrimidine photolyase [Burkholderia sp. TJI49]
          Length = 111

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/89 (55%), Positives = 60/89 (67%)

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFNP  Q
Sbjct: 1   MVVASFLAKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGVDAAPYFRIFNPVAQ 60

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           G+RFDP G ++R W+PEL  +    IHAP
Sbjct: 61  GRRFDPHGAYVRRWVPELAGLDDAAIHAP 89


>gi|114561960|ref|YP_749473.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB
           400]
 gi|114333253|gb|ABI70635.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina
           NCIMB 400]
          Length = 504

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 125/500 (25%), Positives = 217/500 (43%), Gaps = 44/500 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  T   ++++VW + DLR++D++ L  A  N D   + ++   P        + R   F
Sbjct: 1   MPDTIKQAINIVWFKRDLRLSDHQPLVDA-FNHDLPCLLIYTFEPFMLADSHYNERHWRF 59

Query: 61  IYASLLQV-QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVR 118
           ++ SL  + Q+ L   G V+ +         I+ LD       +  ++ +++  + N   
Sbjct: 60  VWQSLQDMNQQLLRFNGQVYMFSM-----PMIDLLDEISQTFEIKNIYSHQEIGLHNSFE 114

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           RDK + +    + +  S+  S   P G+++             R+A  Q+  Q     + 
Sbjct: 115 RDKTVARWCNQQPV--SWQQS---PTGAVVRGRKN--------RQAWDQHWQQVMNSPIA 161

Query: 179 VPAIRLTGPVTPSNIPR-FFDYPFQAIDPMFPIGEQNALH-ILRKFCKEKVYYYVEQRDI 236
           +P  +        N      D    A +  F IG   A   IL  F   +   Y      
Sbjct: 162 IPNWQQCQLQKLDNYQEPTLDNAIMAHNDQFQIGGPKAARTILSSFLTHRGKDYQRSISS 221

Query: 237 PAIQGT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           P++  T  S+LSPYL+ G +S +Q +      + ++    K+     L  +    ++ H 
Sbjct: 222 PSLSRTHCSRLSPYLAWGNISLKQVYQATLTRYNEVQTSNKAWRKPLLAMMSRLHWHCHF 281

Query: 295 MAFYPSVCMGK--PFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           M  + S C  +  P  P      +  D  +   +Q W  G TG PIIDA MR L   G++
Sbjct: 282 MQKFESQCSMEFTPVNPGYVDYPYRTDDKVQQDIQRWADGQTGIPIIDACMRCLKETGYI 341

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRI 408
           + R+R +  SF+   L + W+       +  LD +   +    Q  AS TG +++   R+
Sbjct: 342 NFRMRAMLVSFVTHHLNIAWQHASLPLANYFLDFEPGIHYPQLQMQASVTGINTI---RL 398

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSL--NYPLPI 460
           +NP  Q +  DP+G FIR W PEL N+P +YIH P  W         ND+ L  +YP P+
Sbjct: 399 YNPVKQSQDQDPRGEFIRLWCPELTNLPNEYIHQP--WQQPPMEAIFNDIILGRDYPEPM 456

Query: 461 VDHKKACHHTLNQYYAAKKQ 480
           +D  +A     ++ ++ ++Q
Sbjct: 457 IDLTQASQTARDRLWSYREQ 476


>gi|323493058|ref|ZP_08098192.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
 gi|323312706|gb|EGA65836.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
          Length = 449

 Score =  116 bits (291), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 184/460 (40%), Gaps = 71/460 (15%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKV-------IAVFIATPEQWRQHGISARQSHFI 61
           + L W  NDLR+ DN  L  A    D  +       ++ ++A   Q  Q   S  +  F+
Sbjct: 5   IGLYWFTNDLRVHDNPLLSKAAAEVDQLICLYCYPSVSPYLARYSQ--QAKWSEPKLQFL 62

Query: 62  YASLLQVQKSLSQ----------------KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105
            ASL  +  SL+                 K +V+       + D++   D   +   +  
Sbjct: 63  DASLHCLNLSLNALNQRLLVVDSHPYHAIKDLVYGLGVSHLYVDAVAGCDEQSIIDSLKA 122

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
            F        EVR    LE+          F+ S L  P +      Q+  +  P   + 
Sbjct: 123 EFDALDVAQKEVRTLFTLEQL--------PFELSAL--PDTFTQFRKQVEPLVVPLPISW 172

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCK 224
           ++ L      +L +P I LT                     +F  GEQ  L H  R F  
Sbjct: 173 VKRLPSLP-DTLSLPGISLT---------------HHGGSALFEGGEQAGLAHCRRYFSS 216

Query: 225 EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
                Y E R+ +  +  +++ SP+L+ G LS +  +  LK    + L       +    
Sbjct: 217 ACPSEYKETRNALDGLDYSTKFSPWLAHGCLSAKTIYAMLKR--YERLNGANESTYWIYF 274

Query: 284 ELIWREF-------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
           EL+WRE+       YR  +  +  +    P   +         +H  Q WK G T F I+
Sbjct: 275 ELLWREYFYWYARRYRQKLFRFGGIRNQPPLTSFY--------AHRFQQWKNGQTPFAIV 326

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           +A M QLN  G+M NR R + AS L+ +L +DWR G  YF SQL+D D+ASN G WQ+ A
Sbjct: 327 NACMHQLNQTGYMSNRGRQLVASCLIHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLA 386

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436
             G D     R FN   Q + +DP   FI  W    +  P
Sbjct: 387 GVGADPRGS-RQFNLEKQTQMYDPYQEFIDRWQGRCDASP 425


>gi|309378182|emb|CBX23190.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 433

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 189/468 (40%), Gaps = 89/468 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA     + +I + I   E       + R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIRIDDAETG-----NPRRTAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQVLAGRGIPLYTAA------SPAGLVRLAVRLNIRTVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-------DDSVLLPPGSILNHALQMYK----------------V 157
             L   L    I  +F       D++ L+P     +     Y+                +
Sbjct: 117 NALWHELDKHGITLTFVNDRSVFDNTDLIPDNGTAHTDFNRYREVWLDRFSKHPPADSDI 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           ++ +R+   +NL        P PA    G   P N                  GE  A  
Sbjct: 177 FSTYRQPFPENL------PAPPPAAFSDGIFLPQNG-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFIEQADSYSV-LKDFPSRKNTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYP--SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
             +W + +I R+F+  L   +   +   G P           + +  L  W+QG TG PI
Sbjct: 265 --AWTDNIIRRDFFLQLALQHADDAPADGNP-----------EHTLRLTLWQQGRTGIPI 311

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           IDA+MR L+  G +H  L+ ++A F    L +  R GE +F  QL D D A N G W+ A
Sbjct: 312 IDASMRCLHKTGSLHPALKRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLA 371

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           +S       Y  I        + DP GTF+R  +PEL ++P   IH P
Sbjct: 372 SSQHT----YPDI---AAAAHKTDPDGTFVRRHIPELAHLPAAVIHTP 412


>gi|313669234|ref|YP_004049518.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ST-640]
 gi|313006696|emb|CBN88164.1| deoxyribodopyrimidine photolyase [Neisseria lactamica 020-06]
          Length = 433

 Score =  116 bits (291), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 188/470 (40%), Gaps = 93/470 (19%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I   E       + R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAETG-----NPRRTAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQVLAGRGIPLYTAA------SPAGLVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF--DDSV-----LLPPGSILNHALQMYK----------------V 157
             L   L    I  +F  D +V     L+P G         Y+                +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGSDL 176

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           +  +R+   +NL      S P PA    G   P N                  GE  A  
Sbjct: 177 FAAYRQPFPENL------STPPPAAFSDGIFLPQNG-----------------GETAAWR 213

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
             R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +     
Sbjct: 214 QWRRFLEQADSYSV-LKDFPSRKNTSLMGAYLSAGCISPRL----LARESLERRLN---- 264

Query: 278 AFSWLNELIWREFYRHLMAFYP--SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
             +W + +I R+F+  L   +       G P           + +  L  W+QG TG PI
Sbjct: 265 --AWADNIIRRDFFLQLALQHADDGPSDGNP-----------EHTLRLTLWQQGRTGIPI 311

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           IDAAMR L+  G +H  L  ++A F    L +  R GE +F  QL D D A N G W+ A
Sbjct: 312 IDAAMRCLHKTGSLHPALIRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLA 371

Query: 396 ASTGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           AS         R   P I     + DP GTF+R  +PEL ++P   IH P
Sbjct: 372 AS---------RHTYPDIAAAAHKTDPDGTFVRRHIPELAHLPAAVIHTP 412


>gi|255020504|ref|ZP_05292568.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970024|gb|EET27522.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
           51756]
          Length = 493

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 126/507 (24%), Positives = 202/507 (39%), Gaps = 101/507 (19%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV----FIATPEQWRQHGISARQSHFIYASLL 66
           LVW + DLR TD+  L AA     A  + V    ++  PE   QH        FI  SLL
Sbjct: 6   LVWFKRDLRCTDHAPLAAAARCRSAVGLYVLEDEWLGAPEWDPQHW------EFIRQSLL 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +++ +L+ +G+                     L++    L       + ++ RD    + 
Sbjct: 60  ELRDNLAARGMPL------------------LLRRGAMPLV------LAQLWRDYPFTEL 95

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---------LRSL 177
           L H     ++  +      +        ++ +  F   +++ L Q D         +   
Sbjct: 96  LSHEETGSAWTYARDRRVAAWCRERGIAWRQWPQF--GVVRPLAQRDGWAEAWERFMARP 153

Query: 178 PVPAI-RLTGPVTP---SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           P+ A+ +L G  TP    +IP        A  P+ P GE  A   L  F  E+   Y+  
Sbjct: 154 PLAAVGQLPGTTTPLDGGDIPSLDALGLPAARPIPPAGEAAATRTLESFIAERGSRYLHT 213

Query: 234 RDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
              P  A +G S+LS +L+ G +S RQ   R ++   +L  +  + A          E  
Sbjct: 214 LSSPLLAERGCSRLSAHLAYGTVSMRQVVQRTRQRLRELRKEGSAEAG---------ERA 264

Query: 292 RHLMAFYPSVCMGKPFI------PWTE------------KIEWNKDSHLLQAWKQGYTGF 333
           RHL  F   +     FI      P +E            + +W+++  L  AW +G TGF
Sbjct: 265 RHLRGFLSRLHWHCHFIQKLEDEPASEFHNFSRSYDGLREDDWSEERFL--AWAEGRTGF 322

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           P +DA MR L   GW++ R+R +  SF    L + WR    +   Q LD +   +    Q
Sbjct: 323 PFVDACMRCLRATGWINFRMRAMLVSFASYHLWLHWRGTGLFLARQFLDFEPGIHWS--Q 380

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453
               +G   +   RI++P  Q    DP+G F+R WLPE                     S
Sbjct: 381 MQMQSGTTGINTLRIYSPNKQWADQDPRGEFVRRWLPEWG-------------------S 421

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +YP PIVD ++A      + +A ++Q
Sbjct: 422 PDYPPPIVDEQRAARIAKERIWARRRQ 448


>gi|332292002|ref|YP_004430611.1| DNA photolyase FAD-binding protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170088|gb|AEE19343.1| DNA photolyase FAD-binding protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 510

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 126/499 (25%), Positives = 214/499 (42%), Gaps = 46/499 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V++VW + DLR+ D+  LY A       ++ ++I  P        S R  +FI  SLL 
Sbjct: 15  EVNIVWFKRDLRLHDHLPLYNALQEGQP-LLLLYILEPSLEVDPHYSDRHFNFIKESLLN 73

Query: 68  VQKSL---SQKGIVFQYHQCSNFDDSIEWLDSYCL---QQRVTKLFYNRQYEINEVRRDK 121
           +QK L   + K ++      S F + I+    + +   Q+   ++ Y+R   + E   + 
Sbjct: 74  LQKELKAFNTKILIIHDEVVSAFKELIKHYKIHTVFSHQETGLRVTYDRDLAL-EAYANN 132

Query: 122 LLEKRLQHRVICKSFDDSVLLPP-----GSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           L     +++     F ++ +        G   +    M +   PF+    Q L   D+ +
Sbjct: 133 LKIASPENKFGWVEFANNGVQRKLRNRVGWSEDWEWFMKQPQIPFQPKKNQLLSIEDINA 192

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY-YVEQRD 235
           L     +++   + S+       PFQ        G   A+  L  F  +  Y  Y +   
Sbjct: 193 LEDNFKKVSLQTSASS-------PFQKG------GTTMAMRYLTSFLHDNRYLNYAKHIS 239

Query: 236 IPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P++  +  S+LSPY++ G +S RQ +   K        K K     + + L W+  +  
Sbjct: 240 KPSLARKSCSRLSPYIAWGNVSIRQVYQEAKH--FRESSKNKRAIDGFTSRLRWQAHFIQ 297

Query: 294 LMAFYPS---VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
                 S   V + K +     K+  N +    +AWK+G TG+P++DA MR L   G+++
Sbjct: 298 KFEMEDSMEFVSVNKGY----HKLSKNVNVKYQKAWKEGKTGYPLVDACMRCLCETGYLN 353

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
            R+R +T SF   +L   W+    +   Q LD +   +    Q  A  G   +   RI+N
Sbjct: 354 FRMRAMTLSFFTHNLWQPWQDATYHLAQQFLDFEPGIHYPQIQMQA--GETGINMLRIYN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWLDK----NDLSLNYPLPIVDHK 464
           P       D  G FI+ W+PEL NVP  YIH P   S L++      +  +YP PI+D K
Sbjct: 412 PVKNSYEHDEDGEFIKKWIPELVNVPVAYIHEPWTMSALEQQFCNTVIGEDYPAPIIDIK 471

Query: 465 KACHHTLNQYYAAKKQSLL 483
           K   H  +  +  K  +++
Sbjct: 472 KTAKHAGDVLWKLKDDNMV 490


>gi|260772745|ref|ZP_05881661.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           metschnikovii CIP 69.14]
 gi|260611884|gb|EEX37087.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           metschnikovii CIP 69.14]
          Length = 451

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 124/235 (52%), Gaps = 16/235 (6%)

Query: 206 PMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           P++  GE  AL H+   F  +    Y + R+ +   + +++ SP+L+ G LS  +   RL
Sbjct: 208 PLWRGGESAALEHLEDYFSSDASLIYKQTRNALDEWESSTKFSPWLANGCLSIGRLLARL 267

Query: 264 KEEFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFYPSVCMG----KPFIPWTEKIEWNK 318
            +       +  + +  W+  EL+WRE+++     Y +        K  +P T       
Sbjct: 268 NDYETQ---RGANESTYWIYFELLWREYFQWYALKYGAQLFQFSGIKGQVPLTSYY---- 320

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
               +++W  G T +PI++AAM+QL   G++ NR R + AS LV +L +DWR G +YF S
Sbjct: 321 -PQRMRSWINGTTPYPIVNAAMKQLKATGYLSNRSRQLVASCLVHELSIDWRYGAQYFQS 379

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           QL+D D+ASN G WQ+ A  G D   + R F+   Q   +DP+ +FIRHW  E +
Sbjct: 380 QLIDYDVASNWGNWQYLAGVGADPRGH-RRFDLAKQTALYDPELSFIRHWQGEAD 433


>gi|225011849|ref|ZP_03702287.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-2A]
 gi|225004352|gb|EEG42324.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-2A]
          Length = 490

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 130/268 (48%), Gaps = 25/268 (9%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           P GEQ A   L  F + +   Y +    P  A +  S+LSPY++ G +S RQ   R +EE
Sbjct: 196 PGGEQKASRYLNSFFERRYLNYQKHISKPDLARKSCSRLSPYIAWGNISMRQVLQRTQEE 255

Query: 267 FVDLLIKPKSGAF-SWLNELIWR-----EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
                   KS A  S+ + L W+     +F       Y S+  G   +   +++++    
Sbjct: 256 KER---GNKSRALVSFGSRLRWQAHFIQKFEMECSMEYKSINKGYHALVKEKRVDY---- 308

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
             L+AW+ G+TG P++DAAMR L T G+++ R+R +  SF++  L   W+    +   Q 
Sbjct: 309 --LKAWETGHTGIPMVDAAMRCLVTTGYLNFRMRALVVSFVIHQLWQPWQSISGFLARQF 366

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD +   +    Q  A  G   +   RI+NP   G   DPQG F+  W+PEL  +P +++
Sbjct: 367 LDFEPGIHFPQIQMQA--GETGINTLRIYNPVKNGLEHDPQGKFVSKWIPELQKLPERFL 424

Query: 441 HAP------HSWLDKNDLSLNYPLPIVD 462
           H P       S L    L  +YP PIVD
Sbjct: 425 HTPWEITPLESSLYDFKLGEDYPHPIVD 452


>gi|261400529|ref|ZP_05986654.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ATCC 23970]
 gi|269209791|gb|EEZ76246.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ATCC 23970]
          Length = 429

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 191/469 (40%), Gaps = 94/469 (20%)

Query: 3   ATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           AT A +++ LVW R +LRI DN AL AA     + +I ++I   E       + R++ F 
Sbjct: 7   ATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIWIDDAETG-----NPRRTAFY 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D 
Sbjct: 61  RQSAAELAQVLAGRGIPLYTAA------SPAGLVRLAVRLNIRTVIADASHTFADKLADN 114

Query: 122 LLEKRLQHRVICKSF-------DDSVLLPPGSILNHALQMYK----------------VY 158
            L   L    I  +F       D++ L+P     +     Y+                ++
Sbjct: 115 ALWHELDKHGIALTFVNDRSVFDNTDLIPDNGTAHTDFNRYREVWLDRFSKHPPADSDLF 174

Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI 218
             +R+   +NL        P PA    G   P N                  GE  A   
Sbjct: 175 AAYRQPFPENL------PAPQPAAFSDGIFLPQNG-----------------GETAAWRQ 211

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            R+F ++   Y V  +D P+ + TS +  YLS G +SPR     L  E ++  +      
Sbjct: 212 WRRFLEQADSYSV-LKDFPSRKNTSLMGAYLSAGCISPRL----LARESLERRLN----- 261

Query: 279 FSWLNELIWREFYRHLMAFYP--SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
            +W + +I R+F+  L   +   +   G P           + +  L  W+QG TG PII
Sbjct: 262 -AWADNIIRRDFFLQLALQHADDAPSDGNP-----------EHTLRLTLWQQGRTGIPII 309

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR L+  G +H  L+ ++A F    L +  R GE +F  QL D D A N G W+ AA
Sbjct: 310 DAAMRCLHKTGSLHPALKRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAA 369

Query: 397 STGNDSVPYFRIFNPTIQGK--RFDPQGTFIRHWLPELNNVPTQYIHAP 443
           S         R   P I     R DP GTFI+  +PEL ++    +H P
Sbjct: 370 S---------RHTCPDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTP 409


>gi|85711300|ref|ZP_01042359.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica
           OS145]
 gi|85694801|gb|EAQ32740.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica
           OS145]
          Length = 483

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 129/476 (27%), Positives = 212/476 (44%), Gaps = 49/476 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++++VW + DLR++D++ L AA  ++    +  F   P          R   FI  S+ 
Sbjct: 1   MAINVVWFKRDLRLSDHEPLKAAI-STGRPTLLWFNFEPWLVNDPHYDERHWRFIVESIR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEK 125
            + + L      +       + D++E L  +  Q  +  L+ +++  + N   RDK +  
Sbjct: 60  DINRKLK----AYNTQIYVTYGDTVEQLQIWHQQFSIESLYSHQEVGLLNTFDRDKQVAS 115

Query: 126 RL-QHRVICKSFDDSVLLPPGSI---LNHALQMYKVYTPFRKALIQNLVQADL-RSLPVP 180
              QH V    F+     P G++   LN   Q  K +    KA    L   DL R  PV 
Sbjct: 116 WCRQHHV--NWFES----PTGAVQRGLNSRQQWQKHWYETMKA---PLATPDLARIQPVK 166

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-EQNALHILRKFCKEK--VYYYVEQRDIP 237
           A+ +     P +   +F+       P F  G    A   L  F +++   Y+Y   + I 
Sbjct: 167 AVSVDYRTLPKS---WFER-----RPSFQYGGPAAAWATLNSFLEQRGRAYHYSISQPIR 218

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A    S+LSPYL+ G LS R+C+    ++  +   K    AF  L+ L W   +  +  F
Sbjct: 219 AQHHCSRLSPYLAWGNLSLRECYQATVDKRRETGWKRPLNAF--LSRLHWHCHF--IQKF 274

Query: 298 YPSVCMG-KPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                M   P     E   +  D+ +   L+AW+QG TG+P++DAAMR L   G+++ R+
Sbjct: 275 ESETAMQHAPLNRAYENYPYRSDTQVEQHLKAWQQGKTGYPMVDAAMRCLLQTGYINFRM 334

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPT 412
           R +  SFL   L + W+    +  +  LD +   +    Q  A   G +++   R++NP 
Sbjct: 335 RALLVSFLCHYLHIHWQYATTHLAALFLDFEPGIHYPQIQMQAGIIGTNTI---RMYNPE 391

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVD 462
            Q    DP G +I  W+PEL  +P +  HAP+      + +    L  +YP PIVD
Sbjct: 392 KQAIEKDPTGAYIDQWVPELAELPLEIKHAPYRITPMEAQMYGFKLGEDYPSPIVD 447


>gi|126665677|ref|ZP_01736658.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
 gi|126629611|gb|EBA00228.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
          Length = 519

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 120/512 (23%), Positives = 202/512 (39%), Gaps = 83/512 (16%)

Query: 9   VHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + + WL+ +LR+ D++  + +        KV+ ++   PE  +Q  +S +   FI  +L 
Sbjct: 1   MQIFWLKRNLRLQDSEPFFESMRAFRKKGKVLPLYCHEPELIQQPDVSRQHQLFIQETLE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           ++ +     G            ++++ LD     Q +TK++ +++   N + +RDK +  
Sbjct: 61  ELDRDFQSIGGKL----LQAVGETVDVLDRIHRVQPLTKIWTHQETTQNSQFQRDKAVA- 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                  C      +L    + +    Q  +++ P+    + +              +L 
Sbjct: 116 -----AWCADHGVELLELAQNGIARGSQKPELFPPYFACSVSS--------------KLR 156

Query: 186 GPVTPSNIPRFFDYPFQAIDPMF---------PI----GEQNALHILRKFCKE---KVYY 229
            P+      RF   PF + DP           P+    G   A+  L +F      K Y 
Sbjct: 157 DPIGTDLAERFAPLPFPSCDPKAIPKAAGTDKPLRQKGGRSQAIKNLNRFFTVPYLKQYP 216

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS--------W 281
           +       A QG S++S YL+ G++S R+ +  +     D   +  +  F         +
Sbjct: 217 FQISSPNTAWQGCSRISTYLAYGIVSDRELFQAVDRVVTDAHSRMNADQFGKFQENARFY 276

Query: 282 LNELIWREFYRHLMAFYPSV---CMGKPF-------------IPWTEKIEWNKDSHLLQA 325
           L+ L WR  Y       P +   CM   F             +  +      +      A
Sbjct: 277 LDRLSWRRQYMQTFEASPELEFQCMLAQFNGVREADYSEGHSLTHSSTPSSGQSEQHFTA 336

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           WKQG TGFP IDAAMR LN  GW++ RLR    SF   +L +      EY  ++ LD + 
Sbjct: 337 WKQGLTGFPYIDAAMRFLNQTGWINMRLRATLVSFATMNLWIPTTKVAEYLATEFLDYEP 396

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
             ++   Q  A  G        +++P  QG+  D  G FIR W+PEL +VP   +H    
Sbjct: 397 GIHHVIHQIIA--GTTEFNELMVYDPVKQGRDHDLDGHFIRKWVPELADVPGSELHD--- 451

Query: 446 WLDKNDLSLN----------YPLPIVDHKKAC 467
            L K    L+          YP  IVDH+   
Sbjct: 452 -LAKTAFRLSKQAEIRGYMPYPEAIVDHRATA 482


>gi|261047492|gb|ACX54505.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 166

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 11/172 (6%)

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           N   EE V+L +K           +  RE+ R++   +P     +P +   +   W  D 
Sbjct: 6   NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
           +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   L
Sbjct: 55  NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           LD DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL
Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPEL 166


>gi|302745162|gb|ADL62684.1| cryptochrome 4 [Phreatichthys andruzzii]
          Length = 274

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 123/244 (50%), Gaps = 19/244 (7%)

Query: 193 IPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIP--AIQGTSQLSP 247
           +P   D   +   D ++P GE +AL  L K  + +  V  + + R +P   +  ++ LSP
Sbjct: 39  VPSLADLGLEVEFDVLWPGGETHALQRLDKHFQSQGWVTSFSKTRTVPNSLLPSSTGLSP 98

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSVCM- 303
           YLS+G LS R  +++L   +     + K+ +    S   +++WREF+  + +  P+    
Sbjct: 99  YLSLGCLSVRTFYHQLSSVYA----QSKNHSLPPLSLQGQVLWREFFYTVASSTPNFTKM 154

Query: 304 -GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G P      +I+W  D   L+ W+   TGFP IDA M QL   GW+H+  R   A FL 
Sbjct: 155 EGNPIC---LQIQWYHDPEALEKWRTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLT 211

Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           + DL + W  G + F   LLD D + N G W W +++      Y RIF P   G+R DPQ
Sbjct: 212 RGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFH-KYTRIFCPVRFGRRTDPQ 270

Query: 422 GTFI 425
           G ++
Sbjct: 271 GQYL 274


>gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
 gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
          Length = 522

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/253 (32%), Positives = 118/253 (46%), Gaps = 16/253 (6%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           T+ LSPY S G LS R  ++RL + +  L    ++ A S    +I R     L+      
Sbjct: 252 TTGLSPYFSFGCLSVRHFYHRLDKIYAKLR-SHQTSASSKSRVMIERTRCVLLLEMLSRT 310

Query: 302 C-----MGKPFIPWTEKIEWNKDSHLLQAW--KQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           C     +      W  +      S  +  +      TGFP IDA M QL   GW+H+  R
Sbjct: 311 CRLIARLIFLLCNWHNRFLQLTISDFVACFLSSVAETGFPWIDAIMSQLQKEGWVHHLAR 370

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G++ F   LLD D + N G W W + +      Y RIF P  
Sbjct: 371 HAVACFLTRGDLWISWEEGQKVFEELLLDADYSVNAGNWMWLSGSAFYH-QYTRIFCPVR 429

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLDKND-----LSLNYPLPIVDHKKAC 467
            GKR DP GTFIR +LP L + P QYI+ P  + L+  +     + ++YP P+VDH+   
Sbjct: 430 FGKRTDPDGTFIRAYLPVLKDFPAQYIYEPWKAPLNVQEAAGCIVGMDYPFPMVDHEIVS 489

Query: 468 HHTLNQYYAAKKQ 480
              L      ++Q
Sbjct: 490 QQNLELMREIREQ 502


>gi|159463644|ref|XP_001690052.1| cryptochrome DASH2 [Chlamydomonas reinhardtii]
 gi|158284040|gb|EDP09790.1| cryptochrome DASH2 [Chlamydomonas reinhardtii]
          Length = 647

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 108/244 (44%), Gaps = 42/244 (17%)

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL----------------------IKPK 275
            +  +++LSP+ ++G ++PR+ +  ++   V                         + P 
Sbjct: 412 GVDSSTKLSPFCALGCITPRRIYQEVEAVRVAAKAAAVPCSVGAEAGGGGGGGAAHLLPA 471

Query: 276 SGAFSWLN-ELIWREFYRH------LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
                WL   L  R+F+ +      L        +G+P       + W +D  +L  W  
Sbjct: 472 PAECDWLAMHLCIRDFWTYTVLKEGLATLDERGIVGQP-------VSWRRDPEVLARWCS 524

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG P +DA MR+L   GWM NR R   AS L KDL  DWR G E F   LLD D+A N
Sbjct: 525 GRTGLPFVDANMRELAATGWMSNRGRQNVASLLAKDLQQDWRWGAELFECLLLDSDVAVN 584

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
              W + A  GND  P  R F    QG ++D        WLPEL ++P +  HAP S   
Sbjct: 585 YCNWNYFAGVGND--PRNRRFKTVTQGMQYDEDAVLAATWLPELAHLPPRLRHAPWS--- 639

Query: 449 KNDL 452
            NDL
Sbjct: 640 -NDL 642


>gi|148980022|ref|ZP_01815843.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3]
 gi|145961465|gb|EDK26769.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3]
          Length = 447

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 124/264 (46%), Gaps = 35/264 (13%)

Query: 194 PRFFDYPF-------QAIDPMFPIGEQNA--LHILRKFCKEKVYYYVEQRD-IPAIQGTS 243
           P+   YP+       +A D    +G + A  +H+   F  +    Y + R+ +  I+ ++
Sbjct: 179 PQTATYPYREPILESEASDIGDYVGGETAGLIHLESYFSNDYAGTYKQTRNALDGIENST 238

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLN-ELIWRE-FYRHLMAFY 298
           + SP+L++G +SP+  +  LK+       +   GA     W+  EL+WRE FY   +   
Sbjct: 239 KFSPWLALGCVSPKTIYRHLKQ------FEAHRGANDSTYWIYFELLWREYFYWKCLTLG 292

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            S+          E++           WK G T +PI+DA MRQLN  G+M NR R + A
Sbjct: 293 TSLFGRASNDLSNEQLLDTNTGASFARWKSGNTNYPIVDACMRQLNATGYMSNRGRQLVA 352

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY------------- 405
           S L+ +L +DWR G  YF SQL+D D+ASN G W + A   N   P              
Sbjct: 353 SCLIHELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALNPQAPQNANKQSVAHQSQF 412

Query: 406 -FRIFNPTIQGKRFDPQGTFIRHW 428
             R F+   Q + +DP+  FI  W
Sbjct: 413 KSRHFDLVKQTEMYDPEHAFINKW 436


>gi|294670537|ref|ZP_06735417.1| hypothetical protein NEIELOOT_02259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307816|gb|EFE49059.1| hypothetical protein NEIELOOT_02259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 235

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 112/242 (46%), Gaps = 30/242 (12%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y  Q   PA +G SQLS +   G LS R+    ++E           G  +WL+    R 
Sbjct: 12  YPLQGGFPAKKGVSQLSAHFCFGTLSVREVCRNIRES--------GQGGAAWLDGPARRA 63

Query: 290 FYRHLMAFYPSVC-----MGKPFIPWTE--KI--EWNKDSHLLQAWKQGYTGFPIIDAAM 340
           + R  + F   +       G+  + W +  K+  E ++    L  W++G TG PIIDAAM
Sbjct: 64  YCRRALPFSDGLLELTMKGGRAALHWLQLPKMIREPDRGGEALMRWQEGRTGVPIIDAAM 123

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R LN  G +H  LR + A FL   L +    GE  F ++L D + A N+  WQ       
Sbjct: 124 RALNGGGSLHPALRRLCADFLTGRLNISAAHGEACFAARLTDYEYAVNHHNWQQVG---- 179

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLP 459
                 R+ NP  +    DP G FIR  LPEL ++P   +H PH  L  +D+  N YP P
Sbjct: 180 ------RLNNPFAESLNLDPDGRFIRRHLPELAHLPASALHTPH--LAGSDVETNGYPPP 231

Query: 460 IV 461
            V
Sbjct: 232 CV 233


>gi|327342156|gb|AEA50865.1| cry2-2 [Populus tremula]
          Length = 234

 Score =  114 bits (286), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 114/214 (53%), Gaps = 24/214 (11%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL------- 263
           G  NA   L +F ++ +  YVE R +     TS LSPYL  G LS R+ +  +       
Sbjct: 31  GWSNADKALTEFAEQHLIDYVESR-LKVGTSTSLLSPYLHFGELSVRKVFQCVQLKQLLW 89

Query: 264 -KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWN 317
            KEE  +L+ K     F  L  +  RE+ R+L   +P     S+     + PW      N
Sbjct: 90  AKEE--NLMGKESVTLF--LRSIGLREYSRYLCFNFPFTHERSLLSNLKYFPW------N 139

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
            +    +AW+QG TG+P++DA MR+L   GW+HN++R+I +SF VK LL+ WR G +YF 
Sbjct: 140 DNQVHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSSFAVKVLLLPWRWGMKYFW 199

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
             LLD DL S+  GWQ+ + +  D+    R+ NP
Sbjct: 200 DTLLDADLESDILGWQYISGSLPDAHELERLDNP 233


>gi|156977867|ref|YP_001448773.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
 gi|156529461|gb|ABU74546.1| hypothetical protein VIBHAR_06659 [Vibrio harveyi ATCC BAA-1116]
          Length = 493

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 201/452 (44%), Gaps = 44/452 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++LVWL+ DLR+TD+  L  A  + +  V+ ++I  P        S R   F++ S+  
Sbjct: 3   TINLVWLKRDLRLTDHLPLQHAVSSKNPTVL-LYIFEPMLLDDPHYSERHWRFVWQSIQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           +   L+Q            F ++ + L +   Q  +  +F +++  +N    RDK +   
Sbjct: 62  MNAQLAQHNQKVSV----MFGNARDCLSAIQNQFSIDAVFSHQEIGLNCTFERDKQVSAW 117

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMY---KVYTPFRKALIQN--LVQADLRSLPVP 180
           LQ + I    F+       G+++  A   +   K +    ++ I+   L  A L +L V 
Sbjct: 118 LQAQDIPWHEFEH------GAVVRGAKDRFGWDKHWDTVMRSPIEEVELESASLITLDVE 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A+  T    PS + +        +  +   G   A   L  F + +   Y      P   
Sbjct: 172 ALGFTFTPPPSWLEK--------VKGVQTGGSSIAWQTLEDFFQRRGRDYYRSISSPTAS 223

Query: 241 GT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            T  ++LSPYL+ G +S R+ +  L + +     +    A S  + L W   + H M  +
Sbjct: 224 RTACTRLSPYLAWGNISLREVYQYLLQHWQVTGFRRSLIALS--SRLHW---HCHFMQKF 278

Query: 299 PSVC------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            S C      + + + P   +   N D   L AWK G TG P++DA MR L+  G+++ R
Sbjct: 279 ESECEMEFRCVNQAYDPLLRQAS-NNDPIRLDAWKAGTTGIPLVDACMRCLHHTGYINFR 337

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNP 411
           +R +  SFL   + +DWR G  +     LD +   +   +Q  A  TG +++   RI+NP
Sbjct: 338 MRAMLVSFLTHHMNMDWRDGVTHLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNP 394

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           T Q +  D  G FI  W+PEL  VPT  +  P
Sbjct: 395 TKQAQEHDTDGEFIHKWIPELAKVPTPLLFEP 426


>gi|260765941|gb|ACX50001.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 143

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 89/142 (62%), Gaps = 8/142 (5%)

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GW
Sbjct: 1   YPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGW 60

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLD 448
           Q+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH    AP S L 
Sbjct: 61  QYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQ 120

Query: 449 KNDLSL--NYPLPIV--DHKKA 466
              + L  NYP PIV  D  KA
Sbjct: 121 AAGIELGSNYPRPIVGLDEAKA 142


>gi|88802282|ref|ZP_01117809.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii
           23-P]
 gi|88781140|gb|EAR12318.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii
           23-P]
          Length = 496

 Score =  114 bits (285), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 128/496 (25%), Positives = 206/496 (41%), Gaps = 45/496 (9%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           T    +H+VW + DLR+ DN+A+  A   S+ +V+ +++             R   FI  
Sbjct: 3   TNKEEIHVVWFKRDLRLQDNEAIQNALA-SNKRVLFLYVFENSLIEDPHYDTRHWDFIKQ 61

Query: 64  SLLQVQKSLSQ---KGIVFQYHQCSNFD---DSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           S++ +   L +   K +  Q    + F+   DS +    +  Q+    + YNR  E    
Sbjct: 62  SVVALNAELKKYDTKVLCVQTEVVNAFNQIFDSFKVDTVFSHQETGLLITYNRDKEFTRY 121

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            R+        + V  K  +++ +L    +LN A    K         I+N + A+    
Sbjct: 122 CRN--------NSVTWKENNNNGVLR--GLLNRADWFDKWDDYMYDTQIKNTLNAEKFIS 171

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                ++        +       FQ        G + A      F + +   Y+     P
Sbjct: 172 IEEIEQIEAYFNTVALETPKHSYFQ------QGGTKMAWKYADTFFQTRHEKYMSNISKP 225

Query: 238 AI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF----SWLNELIWREFY 291
           A+  Q  S+LSPYL+ G +S RQ +    +   D   K   GAF     W    I +   
Sbjct: 226 ALARQSCSRLSPYLAWGNVSIRQIFQEATKRKTDA-NKRHLGAFISRLRWQAHFIQKFEM 284

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            H M    S+  G   +  +  +E+ K      AW+ G TGFP+IDA+MR L   G+++ 
Sbjct: 285 EHTME-NASINKGYQKLKKSISLEYQK------AWETGTTGFPLIDASMRCLKETGYLNF 337

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R +  SF    L   W+   ++     LD +   +    Q  A  G   +   RI+NP
Sbjct: 338 RMRAMVVSFFTHILWQPWQSSSQHLSKLFLDFEPGIHFSQLQMNA--GETGINTLRIYNP 395

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKN----DLSLNYPLPIVDHKK 465
                  D  GTFI+ W+PEL N+   +IH P+  + LD+     +L +NYP PIVD K 
Sbjct: 396 IKNSIEHDEDGTFIKKWVPELANLSIAFIHEPYLMTPLDQQFNNFELGINYPHPIVDIKI 455

Query: 466 ACHHTLNQYYAAKKQS 481
           A     +  +  KK S
Sbjct: 456 ARKKASDTLWEMKKNS 471


>gi|119476543|ref|ZP_01616894.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2143]
 gi|119450407|gb|EAW31642.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2143]
          Length = 444

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 199/459 (43%), Gaps = 48/459 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-----TPEQWRQHGISARQSHFIYA 63
           V L W  +DLRI DN  L  A    D  +I ++ A      P   +   +S R+  F++ 
Sbjct: 4   VGLFWFNHDLRIDDNATLLRAAAEVDT-LICLYCADTAKTGPGSRQPAELSLRRREFLFE 62

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  ++  L++ G              +E +        V+ ++ +      E     +L
Sbjct: 63  SLQDLEAQLNRHGQKL----VVRIQPPLEAIAQLITVHNVSHIYRSNHVGSYENTIWTIL 118

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRS-LPVPA 181
            KR       +    ++  P  S L  A+ Q+   ++ FR+ + +  + + +   LP P 
Sbjct: 119 RKRYGMLTFTQCHTHTLFEP--SQLPFAIDQLPSSFSKFRRVVEKMDINSGIAEPLPTP- 175

Query: 182 IRLTGPVTPSNIP---RFFDYPFQAID-PMFPIGEQNA--LHILRKFCKEKVYYYVEQRD 235
             L  P   +++    R+ +Y  Q+ D P    G  +A   H+   F   +   Y   R+
Sbjct: 176 TSLPKPALVADLAWQKRWHEYFTQSSDSPALFRGGASAGRRHLENYFGSRRASDYKATRN 235

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREF 290
            +  +  +++ SP+L+ G LS R    +L+        + ++GA    +  L EL+WRE+
Sbjct: 236 GLDGMDYSTKFSPWLANGSLSTRHIVRQLQG------YEERAGANDSTYWILFELLWREY 289

Query: 291 -------YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
                  Y+  +  +  +    P   +  +          + W  G T + II+A MRQL
Sbjct: 290 FQWYGHKYQQRLFTFSGIGNSTPITSFYPE--------RFKKWCVGNTPYAIINACMRQL 341

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           N  G++ NR R + AS  V +L +DWR G  YF  QL+D D+ASN G WQ+ A  G D  
Sbjct: 342 NATGYLSNRGRQLAASCFVHELGLDWRHGATYFEQQLVDYDVASNWGNWQYLAGVGADPR 401

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            + R F+   Q + +DP   F+  W  E +  P   + A
Sbjct: 402 GH-RHFDLQKQAQIYDPDNHFVHRWAGEDSLQPLDSVDA 439


>gi|329896420|ref|ZP_08271519.1| Deoxyribodipyrimidine photolyase/cryptochrome family protein [gamma
           proteobacterium IMCC3088]
 gi|328921840|gb|EGG29211.1| Deoxyribodipyrimidine photolyase/cryptochrome family protein [gamma
           proteobacterium IMCC3088]
          Length = 499

 Score =  114 bits (284), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 127/501 (25%), Positives = 211/501 (42%), Gaps = 50/501 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A   + V  VW + DLR+ D+  L AA +     ++ VF   PE       S R   F
Sbjct: 1   MSANEGLQV--VWFKRDLRLEDHAPLAAAANGKPTLLLYVF--EPELMNDPHYSERHWRF 56

Query: 61  IYASLLQVQ---KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           +  SLL++    + L+Q+  + +          +E LD+      ++ L  + +  +   
Sbjct: 57  VTQSLLEMNGRLEPLNQRVYILK-------GSMLEVLDAIHAHNPISNLLSHEETGLRVT 109

Query: 118 -RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
             RDK +     QHRV  + +  +       +             + + + Q L + +  
Sbjct: 110 YERDKAISTWCRQHRVNWQEYQSN------GVKRGRYSRDGWAHDWHRVMSQPLAEPEWA 163

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKE--KVYYYVE 232
            L +PA      ++   +       +   DP   +G   A  H L  F  E  K+Y+   
Sbjct: 164 QL-LPAEDQQRCLSDYVMESALLKAWSTRDPSHQLGGVGAAQHALESFFDERGKIYHKAL 222

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG---AFSWLNELIWRE 289
            + + + +  S+LSPYL+ G LS RQ + RL+ E      + +SG   A S LN  +   
Sbjct: 223 SKPLLSRKHCSRLSPYLAWGNLSIRQVYQRLQAE------RGRSGWGRALSALNSRL--H 274

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL---QAWKQGYTGFPIIDAAMRQLNTI 346
           ++ H +  + S    + F P        +D H L   QAW  G TG P +DA +R L   
Sbjct: 275 WHCHFIQKFESEDRIE-FEPMNFGYHQFQDDHSLANEQAWATGNTGIPYLDACLRCLQNT 333

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G++H R R +  S L   +   W+          LD +   +    Q     G   +   
Sbjct: 334 GYLHFRGRAMIVSALCHLMQGRWQFAARQLAQWFLDFEPGIHYA--QIQMQVGLTGINTL 391

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLNYPLPIVD 462
           RI+NP  QG   DP   FI+ W+PEL+ +P   +H P  W    +++  + +NYP P++D
Sbjct: 392 RIYNPVKQGLDHDPDAVFIKKWVPELSELPVPLVHTP--WELGPIERACMDMNYPDPVID 449

Query: 463 HKKACHHTLNQYYAAKKQSLL 483
             +A H      Y  ++Q+ L
Sbjct: 450 IAQA-HKAARALYWDRRQNPL 469


>gi|124107288|dbj|BAF45421.1| cryptochrome precursor [Dianemobius nigrofasciatus]
          Length = 539

 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 214/505 (42%), Gaps = 79/505 (15%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
            R+ LR+ DN AL  A  + DA  + +FI   E      +   +  F+  SL  +   L 
Sbjct: 16  FRHGLRLHDNPALLDAVKDCDA-FLPIFIFDGESAGTKLVGYNRMKFLLESLQDIDSQLK 74

Query: 74  QKG-----------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           + G            VFQY        +I  L   C +Q    ++ +R   + +  ++  
Sbjct: 75  KYGGNLYLFHGTPLCVFQY-----ISQTIG-LHKLCFEQDCEPIWQHRDDLVKKFCKENG 128

Query: 123 LE--KRLQHRV-----ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           ++  +R+ H +     + K+   +  +PP +       +  +  P R          +  
Sbjct: 129 IKCIERVSHTLWNPHDVIKT---NGGIPPLTFEMFVHTVSVIGPPPRPVEDVEWSVVNFG 185

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPI-----GEQNALHILRKFC 223
            LP+ +I       PS+I  F ++P          +  M  I     GE  AL  L++  
Sbjct: 186 VLPMSSI-------PSDIKVFKNFPTPEDFGISSEVGNMNRIIQWIGGESQALRHLQERL 238

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSP------YLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
           K +   + E   +P       L P       L  G LS R+ +  +++ +  +     + 
Sbjct: 239 KVEENAFREGYCLPNQARPDLLGPPTSQSAALRFGCLSVRKFYWSIQDMYSSICGPSPNQ 298

Query: 278 AFSWLNELIWREFYRHLMA---FYPS-----VCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
             +  ++LIWRE++  +     +Y       +C+    IPW  K ++  D      WK+G
Sbjct: 299 NIT--SQLIWREYFYTMSVGNEYYAEMDRNPICLN---IPW--KNDYGSD---FNKWKEG 348

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388
            TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G  +F+  LLD D +  
Sbjct: 349 KTGYPFIDAIMRQLIQEGWIHHVARNAVACFLTRGDLWISWEEGLNFFLQYLLDADWSVC 408

Query: 389 NGGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSW 446
            G W W +S+  +  +       P   G+R DP G +I+ ++PEL N P +Y++ P  + 
Sbjct: 409 AGNWMWVSSSAFEQLLDCSHCMCPVNYGRRLDPWGQYIKRYIPELKNYPVEYLYEPWKAP 468

Query: 447 LDKND-----LSLNYPLPIVDHKKA 466
           L   +     +  +YP  I+DH+ A
Sbjct: 469 LHVQETAGCIVGKDYPERIIDHQIA 493


>gi|327342142|gb|AEA50858.1| cry1-1 [Populus tremula]
          Length = 308

 Score =  113 bits (283), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 141/315 (44%), Gaps = 32/315 (10%)

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           VR  +  E      +  +SF+  +L  P  + +   + +  +  F +  +      +   
Sbjct: 5   VRDHRAKEILTAQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPL 64

Query: 177 LPVPAIRLTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYY 230
           LP P   ++G V+  PS    F D   +  + +    +  G  NA   L  F    +  Y
Sbjct: 65  LP-PKRIISGDVSRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEY 123

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCW--------------NRLKEEFVDLLIKPKS 276
              R       TS LSP+L  G +S R+ +              N+  EE V+L IK   
Sbjct: 124 SMNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFIK--- 180

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
                   +  RE+ R+L   +P     +P +   +   W  D    +AW+QG TG+P++
Sbjct: 181 -------SIGLREYSRYLSFNHP-YTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLV 232

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DA MR+L   GW+H+R+R++ ASF VK L + WR G +YF   LLD DL S+  GWQ+  
Sbjct: 233 DAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYIT 292

Query: 397 STGNDSVPYFRIFNP 411
            T  D   + RI NP
Sbjct: 293 GTLPDCREFDRIDNP 307


>gi|322694523|gb|EFY86350.1| Putative cryptochrome DASH [Metarhizium acridum CQMa 102]
          Length = 702

 Score =  113 bits (283), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 117/258 (45%), Gaps = 30/258 (11%)

Query: 208 FPIGEQNALHILRKFCKEKVY--YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK- 264
           F  GE +    LR   K      Y   +  +  +  + +LS YLS+G L+ RQ    L  
Sbjct: 263 FTGGETSGWARLRHLGKSSAMTSYKDTRNGLVGVDYSLKLSAYLSLGCLTARQIHEELLK 322

Query: 265 -EEFVDLLIKPKSGAFSWLN--------ELIWREFYR-----------HLMAFYPSVCMG 304
            E+  D   K   G     N        EL+WR++ R            L  F       
Sbjct: 323 LEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRLCTAKFGRKLFRLSGFRQDRSYD 382

Query: 305 KPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           K +    E+   ++        S +L+ ++ G TG  IIDA+ R+L   G+  NR R   
Sbjct: 383 KKWKTANEEKAASEQEPPPAQISKILERFQNGTTGMGIIDASQRELFHTGYTSNRARQNA 442

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASF  K L +DWR G E++   L+D D++SN   WQ+ A TGND     R FNP  Q   
Sbjct: 443 ASFFSKHLEIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGTGNDPRGDARTFNPVKQAFD 502

Query: 418 FDPQGTFIRHWLPELNNV 435
           +D +GT++R W+PEL  +
Sbjct: 503 YDKEGTYVRMWVPELQGL 520


>gi|254468682|ref|ZP_05082088.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
           proteobacterium KB13]
 gi|207087492|gb|EDZ64775.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
           proteobacterium KB13]
          Length = 416

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 201/443 (45%), Gaps = 52/443 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS ++ W RN+LRI DN  L   C      +  V+I         G    ++ F+  +L 
Sbjct: 1   MSHNIFWFRNNLRIHDNYPL-VQCIKDSTSISFVYIVNRHLRVLDGHENHKNKFLIDALN 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN--RQYEINEVRRDKLL- 123
           Q++ +LS  G     H+             Y ++   + +F +  +QY+IN++  +K++ 
Sbjct: 60  QLKINLSDLG-----HEL------------YIIEGEPSDIFSSLAKQYQINKIYCEKIVS 102

Query: 124 -----EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                E+    +    SF DS LL    +    + +   +T FRK +    + A L    
Sbjct: 103 PYETDEELSITQTDVLSFWDSTLLNIDDLDFDVIDLPDTFTTFRKKVELKPITATL---- 158

Query: 179 VPAIRLTGPVTPSNIPRF----FDYPFQ-AIDPM--FPIGEQNALHILRKFCKEK--VYY 229
              + L  P   SNI  +    FD  ++ ++D +  + I E  A   ++ +  +K  + Y
Sbjct: 159 YEGLTLPKPANLSNINSYQLPNFDIKYRGSVDFLNHYTICENGAQKYVKDYFSDKKALEY 218

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---W-LNEL 285
              + ++     +++ S +L+ G++S RQ +  LK        +  +GA     W L EL
Sbjct: 219 KQTRNELMGNDFSTKFSVWLAHGLISARQIFTSLKN------YEESNGANESTYWILFEL 272

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WR+++R L   Y      +  +   E  E ++D+  +   ++  T    I+A +R+L  
Sbjct: 273 LWRDYFRLLHFKYNRKLYFQFGLKNKEINETSQDN--ISNLEEANTESSFINAGIRELQN 330

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G++ NR+R I ASF++ ++ +DWRIG ++F   L+D D+ SN G W + A  G D    
Sbjct: 331 SGFLSNRMRQILASFIIFEMKIDWRIGADFFQKYLIDFDIYSNQGNWIYIAGYGTDPRG- 389

Query: 406 FRIFNPTIQGKRFDPQGTFIRHW 428
            R FN   Q   +D    +   W
Sbjct: 390 GRRFNVEKQKNTYDIDNQYEMCW 412


>gi|121705010|ref|XP_001270768.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
 gi|119398914|gb|EAW09342.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
          Length = 613

 Score =  113 bits (282), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 125/266 (46%), Gaps = 34/266 (12%)

Query: 211 GEQNALHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCW----- 260
           GE  AL +L  + ++  Y   + + +  PA    Q T+ LSP+L  G LS R+ W     
Sbjct: 247 GETAALRVLAGYIQDGEYVGTFEKPKTSPAAFEPQATTLLSPHLHFGSLSVRKFWWDVQG 306

Query: 261 ---NRLKEE---------------FVDLLIKPKSGAFSWLNELIWREFYR----HLMAFY 298
               R K++               F D+    ++       + +  ++ R    HL   Y
Sbjct: 307 VLQQRRKQKKANASIPTNLPGQLLFRDMYFAAQAAIGHAFGQTLGNKYVRFIDWHLPTNY 366

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +   GK     T  ++ ++  +  + WK+G TGFP IDA MRQL   GW+H+  R   A
Sbjct: 367 ITTEEGKYQPDGTYTVDSSEAENWFRRWKEGRTGFPWIDALMRQLKLEGWIHHLGRHSVA 426

Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            FL +    V W  G E F   L+D + A N G WQW + T   S  Y+  ++P   GK+
Sbjct: 427 CFLTRGGCYVSWERGAEVFEDWLVDHETACNVGNWQWLSCTAFYSQ-YYHCYSPIAFGKK 485

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAP 443
           +DP+G F+R + PEL N   +YI+ P
Sbjct: 486 WDPEGEFVRRYCPELANFDKKYIYEP 511


>gi|163801389|ref|ZP_02195288.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4]
 gi|159174878|gb|EDP59678.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4]
          Length = 493

 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 130/495 (26%), Positives = 219/495 (44%), Gaps = 50/495 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++L+WL+ DLR+TD+ AL  A  +S    + +++  P        S R   F++ SL  
Sbjct: 3   TINLLWLKRDLRLTDHLALQHAL-SSGHPTLLLYVFEPMLLEDPHYSERHWRFVWQSLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           +   L+  G     H      + ++ L +   Q  ++ +F +++  +N   +RDK +   
Sbjct: 62  MNAQLADYG----QHILVLSGNVVDCLSAIQTQFDISAVFSHQEIGLNCTFKRDKQVANW 117

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHA---LQMYKVYTPFRKALIQN--LVQADLRSLPVP 180
           LQ + I    F+       G+++  A   L   K +    +A I+N  L  A L SL   
Sbjct: 118 LQAQGIPWHEFE------YGAVVRGAKDRLGWDKHWNAVMRAAIRNPELKNASLISLSND 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            +  +    PS   R           M   G   A   L  F + +   Y  +   P+  
Sbjct: 172 TLNCSFTPPPSWTVR--------TKGMQTGGSSVAWQTLDDFFQRRGRDYYRRISSPSAS 223

Query: 241 GT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            T  ++LSPYL+ G +S R+ +  L E +     +    A S  + L W   + H +  +
Sbjct: 224 RTACTRLSPYLAWGNISLREVYQYLLEHWQLAGFRRSLIALS--SRLHW---HCHFIQKF 278

Query: 299 PSVCMGKPFIPWTEKIE------WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            S C  + F    +  E       ++D   L+AWK G TG P+IDA MR L+  G+++ R
Sbjct: 279 ESECKME-FRCVNQAYEALLRQACSQDQTALEAWKVGSTGIPLIDACMRCLHHTGYINFR 337

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNP 411
           +R +  SFL   + +DWR G  +     LD +   +   +Q  A  TG +++   RI+NP
Sbjct: 338 MRAMLVSFLTHHMNMDWRDGVAHLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNP 394

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVDHKK 465
           T Q +  D  G FI  W+PEL  VPT  +  P       + + + D    Y  PI+D   
Sbjct: 395 TKQAQEHDADGKFIHKWIPELAMVPTPLLFEPWKMTAMETVMYQIDPDSCYLAPIIDLDN 454

Query: 466 ACHHTLNQYYAAKKQ 480
           +      + +A +K+
Sbjct: 455 SAKAARERLWAWRKR 469


>gi|77361123|ref|YP_340698.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876034|emb|CAI87256.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 503

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 218/489 (44%), Gaps = 43/489 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M +++VW + DLR++D++ L  A  N     + ++   P        + R   F+Y S++
Sbjct: 1   MKINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLLYNFEPLMLEDTHYNERHWRFVYQSIV 59

Query: 67  QVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLE 124
           ++   L++    V+ ++   N  D +E L +   Q  +  +F +++  +N    RDK ++
Sbjct: 60  ELNNQLTRFNACVYIFN--LNMGDLLESLKT---QFEIVNIFSHQEIGLNNTFERDKAIK 114

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-R 183
              QH  I  ++ +S     G+++            +++ +   +   + +S+    +  
Sbjct: 115 VWCQHNHI--NWQESQT---GAVIRGKKNRNNWNERWQQTMQAPIAVPNWKSIKTITLNN 169

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242
              P  PS   +  D  FQ   P+       A  +L+ F  E+   Y +    P++    
Sbjct: 170 YQAPELPSAYTQNHD-SFQQGGPL------QARTVLQSFFAERGKGYQKGISSPSLSQVH 222

Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPS 300
            S+LSPYL+ G +S RQ +    +E+       K G    L   + R  ++ H M  + S
Sbjct: 223 CSRLSPYLAWGNISLRQVYQMAFDEYHSKH-PDKRGWKRPLAAFVSRLHWHCHFMQKFES 281

Query: 301 VCMGK--PFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            C  +     P      +  D H+   ++ W QG TG PIIDA MR L   G+++ R+R 
Sbjct: 282 ECSMEFLALNPGYHVFPYRDDEHVKSDIERWVQGQTGIPIIDACMRCLKATGYINFRMRA 341

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414
           +  SF+   L + W+       +  LD +   +    Q  AS TG +++   R +NP  Q
Sbjct: 342 MLVSFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVTGINTI---RHYNPIKQ 398

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD---HKK 465
            +  DP G+FI+ W PEL  +P +Y+H P       +  +   L  +YP P++D     K
Sbjct: 399 SEDQDPTGSFIKKWCPELEKLPIEYLHQPWQQTPMEALFNDFKLGEDYPEPMLDLTAASK 458

Query: 466 ACHHTLNQY 474
           A    L QY
Sbjct: 459 AARERLWQY 467


>gi|255080632|ref|XP_002503889.1| predicted protein [Micromonas sp. RCC299]
 gi|226519156|gb|ACO65147.1| predicted protein [Micromonas sp. RCC299]
          Length = 869

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 123/271 (45%), Gaps = 15/271 (5%)

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           G + PS+  R +    +A   M   G   A    ++           + D+     TS L
Sbjct: 289 GLIPPSDAARDWSAGLRAEWDMSESGASEAWAQFKRMGLAGYEATHGRCDLTHKSSTSLL 348

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF-----YPS 300
           SPYL  G LSPR+ ++ L++      +    G    L+   W   YR   A+     +P 
Sbjct: 349 SPYLRFGQLSPRRVYSELRDARFGTAVDGVEGRR--LSRTFWHRLYRREFAYWQLGVFPQ 406

Query: 301 VCMGKPFIPWTEKIEW---NKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           + +      +  + +W    +D   +  L+ W++G TGFP++DA MR+L   GWMH   R
Sbjct: 407 LAVTSWRSHYESRGDWRWPERDPAAAEDLRRWQKGETGFPVVDAGMRRLIRTGWMHQTER 466

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTI 413
           M+ A+FLV  L + W  G  +F   L+D DLA N+  WQ A  +G D    F     P  
Sbjct: 467 MLAATFLVDYLHIHWSHGARWFHDYLVDADLAINSMMWQNAGKSGLDQWDVFAGGLAPDG 526

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYI-HAP 443
             +  DP G  I  ++PEL  +P  ++ H P
Sbjct: 527 SARTHDPNGETIAQYVPELAGLPPGHLRHRP 557


>gi|88859578|ref|ZP_01134218.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2]
 gi|88818595|gb|EAR28410.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2]
          Length = 437

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 184/441 (41%), Gaps = 50/441 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYA 63
           + L    +DLR+ DN AL     + D  +I +++  P+     Q+ Q   SA +  F+  
Sbjct: 4   IGLFIFDHDLRVLDNPALKVLADSVDT-LICLYVHVPQDAFSQQFSQTQPSAAKLGFLQQ 62

Query: 64  SLLQVQKSLS--QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            L+++ ++L    + +V ++    +       + +Y     +T +        NE    +
Sbjct: 63  HLVELDENLRLLNQFLVIEHGSVPSV------VSNYIKHYGITDIGRTIHAGFNEQHHWQ 116

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L+        C +   S L     +      + K +TP RK   Q  V A     P+ A
Sbjct: 117 YLQATFPAVKFC-AHSGSSLFRLADLPFELADLPKSFTPCRKLFEQLTVPA-----PLEA 170

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-YYYVEQRDIPAIQ 240
           +    P   S   +  D    A +  +  GE  A   L  +   K    Y E R+  A+ 
Sbjct: 171 LTYLPPPLLSTEHKKHDLKPSAFNRYYNGGEITAHAYLHHYFSSKAPSIYKETRN--ALM 228

Query: 241 G---TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY-----R 292
           G   +++LS +L+ G LSPRQ    LK    +         +    EL+WRE++     +
Sbjct: 229 GDDFSTKLSGFLAHGALSPRQIMAALKR--YESTQGANESTYWIYFELLWREYFYWYARK 286

Query: 293 HLMAFYPS-----VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           H    + +       +   F P              + W +G T +P+++A MR+LN  G
Sbjct: 287 HQQRLFSAGGVRQKSLATSFYP-----------SRFKQWCEGSTPYPLVNALMRELNETG 335

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WM NR R I AS  V +L +DWR G  YF  +L+D D+ SN G WQ+ A  G D     R
Sbjct: 336 WMSNRGRQIVASCFVNELELDWRYGAAYFEQRLIDYDVGSNWGNWQYLAGVGPDPRG-GR 394

Query: 408 IFNPTIQGKRFDPQGTFIRHW 428
            F+   Q   +DP   F+  W
Sbjct: 395 HFHIKKQAALYDPNNAFVTFW 415


>gi|330915233|ref|XP_003296949.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
 gi|311330639|gb|EFQ94953.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
          Length = 655

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 138/325 (42%), Gaps = 42/325 (12%)

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
           N +Q D       A  L GP +   +P   +   +        GE  AL  L +    + 
Sbjct: 199 NAIQRDGHEASYTA--LAGPNSDFAVPTMEELGLKPATTAHRGGETEALRALDEIIANEE 256

Query: 228 YY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           Y   + + +  P     Q T+ LSP++  G LS R  + R ++       K      S  
Sbjct: 257 YTATFEKPKTAPTAFEPQSTTLLSPHMHFGSLSCRLFYWRAQDVVDKFKGKASQPPVSLT 316

Query: 283 NELIWREFY---RHLMAFYPSVCMGKP---FIPWTEKIEWNKDSHLL------------- 323
            +L++R+ Y   +  + +        P   FIPW    + +  S L+             
Sbjct: 317 GQLLFRDMYFGAQAALGYSFGQTYNNPNCRFIPWHLPSKIDTKSGLITGEYMVDNAEAET 376

Query: 324 --QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQL 380
             Q WK G TGFP IDA MRQL   GW+H+  R   A FL +    +DW  G E F   L
Sbjct: 377 HFQRWKHGQTGFPWIDALMRQLAQEGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWL 436

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           +D + A N G WQW + T      ++R ++P    +++D +G F+R ++PEL     +YI
Sbjct: 437 IDHEAACNIGNWQWLSCTAF-FAQFYRCYSPIAFPQKWDKEGEFVRKYVPELARFDKKYI 495

Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKK 465
           + PH              PIVD KK
Sbjct: 496 YEPHK------------APIVDQKK 508


>gi|323455842|gb|EGB11710.1| hypothetical protein AURANDRAFT_6503 [Aureococcus anophagefferens]
          Length = 127

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 74/121 (61%), Gaps = 2/121 (1%)

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L+AW+ G TGFP++DAAMRQL   GWM N +R + ASFLV+ L +DWR GE +F   L+D
Sbjct: 2   LRAWQLGLTGFPLVDAAMRQLWVWGWMPNYVRHVVASFLVEHLHLDWRHGEAWFHDTLVD 61

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D A N   WQ    +G D   +  + +P    K  DP+G ++R W PEL  +P  +IH 
Sbjct: 62  ADAAINAFMWQNGGRSGMDQWNF--VMHPVHAAKNCDPEGDYVRRWCPELAALPRDHIHQ 119

Query: 443 P 443
           P
Sbjct: 120 P 120


>gi|315126037|ref|YP_004068040.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
 gi|315014551|gb|ADT67889.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
          Length = 509

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 210/478 (43%), Gaps = 48/478 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + +++VW + DLR++D++ L  A  N     + ++   P        + R   F+Y S+ 
Sbjct: 3   IKINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLIYNFEPLLLDDAHYNERHWRFVYQSIC 61

Query: 67  QVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLE 124
            +   L++    V+ ++     +D    L+S   Q  +T LF +++  +N    RD  ++
Sbjct: 62  DLNTQLARFNSRVYIFN-----EDMQTLLESLHSQFEITNLFSHQEIGLNNTFERDIAIK 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183
              QH  I     + +  P G+++            +++ +   +   + + + P+    
Sbjct: 117 AWCQHHHI-----NWLESPTGAVIRGKRNRSNWNERWQQTMQAPIAIPNWKQIKPLTLTD 171

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242
              P+ PS   +  ++ FQ   P        A  +++ F  E+   Y +    P++  T 
Sbjct: 172 YQTPILPSAYTQDNEH-FQHGGPRL------AREVMQSFFAERGKGYQKGISSPSLSRTH 224

Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-----GAFSWLNELIWREFYRHLMA 296
            S+LSPYL+ G +S RQ +    + +       K       AF  ++ L W   + H M 
Sbjct: 225 CSRLSPYLAWGNISLRQVYQMAIDAYHSTSADKKGWKRPLAAF--VSRLHW---HCHFMQ 279

Query: 297 FYPSVCMG--KPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            + S C    K   P      +  D+ +   ++ W QG TG PIIDA MR L   G+++ 
Sbjct: 280 KFESECTMEFKALNPGYHAFPYRDDAQVTSDIERWAQGQTGIPIIDACMRCLKATGYINF 339

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFN 410
           R+R +  SF+   L + W+       +  LD +   +    Q  AS TG +++   R +N
Sbjct: 340 RMRAMLVSFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVTGINTI---RHYN 396

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD 462
           P  Q +  DP G FI+ W PEL  +P +Y+H P       +  +   L  +YP P++D
Sbjct: 397 PIKQSEDQDPTGAFIKKWCPELEKLPIEYLHQPWEQTPMEALFNDFKLGEDYPEPMLD 454


>gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera]
          Length = 633

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 147/327 (44%), Gaps = 62/327 (18%)

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAI--DPMFPI--GEQNALHILRKFCKEK--VYYYVE 232
           +P +   G    SN+P   +  ++ I  D + P   GE  AL  LR+  ++K  V  + +
Sbjct: 308 LPPVGDVGTCEISNVPTVKELGYEEIGQDELTPFKGGESEALKRLRESIRDKDWVANFEK 367

Query: 233 QRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            +  P+      T+ LSPYL  G LS R  +  L + + ++  +  S   S + +L+WR+
Sbjct: 368 PKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNVK-RHTSPPVSLVGQLLWRD 426

Query: 290 FYRHLMAFYPSVCMGKPFIP------WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           F      FY +V  G P           ++I WN D  LL AW++  TG+P IDA M QL
Sbjct: 427 F------FY-TVGFGTPNFDRMKGNRICKQIPWNDDDELLAAWREARTGYPWIDAIMVQL 479

Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
              GWMH+  R   A FL + DL V W  G + F   L+D D A NNG W W + +    
Sbjct: 480 RKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSS--- 536

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNY 456
             +F  + P                      ++P +YI+    AP S   K    +  +Y
Sbjct: 537 --FF--YQP----------------------DMPKEYIYEPWTAPPSIQXKAKCIIGKDY 570

Query: 457 PLPIVDHKKA---CHHTLNQYYAAKKQ 480
           P P+V H  A   C   L + YA  K+
Sbjct: 571 PKPVVCHDSAXKECKRKLAEAYALNKR 597


>gi|332532093|ref|ZP_08407976.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038434|gb|EGI74878.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 509

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 115/475 (24%), Positives = 213/475 (44%), Gaps = 46/475 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW + DLR++D++ L  A  N     + ++   P        + R   F+Y S++++
Sbjct: 5   INIVWFKRDLRLSDHQPLKNAFSNG-LPTLLLYDFEPLLLEDAHYNERHWRFVYQSIVEL 63

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126
              L++    V+ ++   N     + L+S  +Q  +  +F +++  +N    RDK+++  
Sbjct: 64  NNQLARFNACVYIFNLNMN-----DLLESLKMQFEIVNIFSHQEIGLNNTFERDKVIKAW 118

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-RLT 185
            QH  I  ++ +S     G+++            +++ +   +   + +S+    +    
Sbjct: 119 CQHNHI--NWQESQT---GAVIRGKKNRNNWNERWQQTMQAPIAVPNWKSIKTITLNNYQ 173

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--S 243
            P  PS   +  D  FQ   P+      +A  +++ F  E+   Y +    P++  T  S
Sbjct: 174 APELPSAYTQDHD-SFQQGGPL------HARTVMQSFFAERGKGYQKGISSPSLSQTHCS 226

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPSVC 302
           +LSPYL+ G +S RQ +    +E+       K G    L   + R  ++ H M  + S C
Sbjct: 227 RLSPYLAWGNISLRQVYQMAIDEYHSKH-PDKRGWKRPLAAFVSRLHWHCHFMQKFESEC 285

Query: 303 M--------GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                    G    P+        D   ++ W QG TG PIIDA MR L   G+++ R+R
Sbjct: 286 SMEFLALNPGYHVFPYRNDERVKND---IERWAQGQTGIPIIDACMRCLKATGYINFRMR 342

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTI 413
            +  SF+   L + W+       +  LD +   +    Q  AS TG +++   R +NP  
Sbjct: 343 AMLVSFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVTGINTI---RHYNPIK 399

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD 462
           Q +  DP G+FI+ W PEL  +P +Y+H P       +  +   L  +YP P++D
Sbjct: 400 QSEDQDPTGSFIKKWCPELEKLPIEYLHQPWEQTPMEALFNDFKLGEDYPEPMLD 454


>gi|269104335|ref|ZP_06157031.1| deoxyribodipyrimidine photolyase single-strand-specific
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268160975|gb|EEZ39472.1| deoxyribodipyrimidine photolyase single-strand-specific
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 436

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 121/442 (27%), Positives = 186/442 (42%), Gaps = 46/442 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61
           M   L   +NDLR+ DN AL  A    D +++ V+     Q     +  H   A +  F+
Sbjct: 1   MKTGLYLFQNDLRLHDNLALLNATTQCD-RLLLVYCLPYHQANRYPYHIHNYGALRLQFL 59

Query: 62  YASLLQVQK---SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
             SL Q+ +    L Q+ +VF  H        I   D + +       +Y  Q      +
Sbjct: 60  LQSLHQLHQQLQDLEQELLVFLEHPLHILPQLISQYDIHTIISSEQVGYYENQTWQTLNQ 119

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           R   +E         K +    LL    +     ++   ++ FR+ +        +   P
Sbjct: 120 RYPYIE--------FKQWPTHTLLHKEQLPFDLNKLPSTFSQFRRQV------EHIELTP 165

Query: 179 VPAIRLTGPVTPSNIPR------FFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYV 231
           +       P +P+ I        F  +P  +    F  GE  A+ H+   F  +K   Y 
Sbjct: 166 LTPYISHLPPSPNKIAHISILDSFISHPKPSD---FIGGEATAISHLTAYFKSDKASRYK 222

Query: 232 EQR-DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-ELIWRE 289
           E R D+     +++ SP+L+ G LS ++    L +    +   P S    W+  EL+WRE
Sbjct: 223 ETRNDLDGWDYSTKFSPWLAQGCLSAKRVIYELNQYHHQVDETPSS---QWIKFELLWRE 279

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTI 346
           +++    +Y      K F     K      S      + W +  T +P+++A MRQL T 
Sbjct: 280 YFQ----WYAHHHQQKIFQFKGIKSSSPHTSFYPERFKRWSESNTPYPLVNALMRQLITT 335

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+M NR R I AS  V +L +DWR G  +F   L+D D+ASN G WQ+ A  G D     
Sbjct: 336 GYMSNRGRQIVASCFVNELELDWRYGAAFFEQHLIDYDIASNWGNWQYLAGVGADPKGN- 394

Query: 407 RIFNPTIQGKRFDPQGTFIRHW 428
           R FN   Q + FDPQG FI  W
Sbjct: 395 RHFNLDKQTELFDPQGQFITKW 416


>gi|171057933|ref|YP_001790282.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
 gi|170775378|gb|ACB33517.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
          Length = 493

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 188/497 (37%), Gaps = 72/497 (14%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW + DLR+TD+  L  A     A  +A+FI  P          R   ++   L 
Sbjct: 1   MSRAVVWFKRDLRVTDHAPLAEAARCDAA--LALFIIEPAWLDSPECHPRHVTWLLKCLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
            ++ +L+ +G+           +++E L +   +   T+LF + +        RD+ + +
Sbjct: 59  PLRDALAARGLPLLVRT----GEAVEVLAALRREFACTRLFSHEETGPGWSYARDRAVAR 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                  C++   +    P + +   L+  + +        Q  + A    +P       
Sbjct: 115 ------WCRAHGVAWTEWPQTGVIRRLKDRRGWA----GRWQQRMDAPCVRVPAGWRAAP 164

Query: 186 G--PVT-PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240
           G  P T P+++P   +          P GE  A  +L+ F   +   Y      P  A  
Sbjct: 165 GFAPSTLPADLPTLRELGVATAPDTPPAGEAAAQQMLQSFLGGRALGYRRHLSSPLAAEA 224

Query: 241 GTSQLSPYLSIGVLSPR-------QCWNRLKEEFVDLLIKPKSGAFSWLNELI------- 286
           G S+LS +L+ G LS R              +  +   ++  +G   W    +       
Sbjct: 225 GCSRLSEHLAFGTLSLRMLHQATEATLRATSDRELAYSLRGFAGRLRWHCHFMQKLEDEP 284

Query: 287 ---WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
              WR F R      P                   D   LQAW +G TGFP++DA MRQL
Sbjct: 285 AIEWRNFARSADGLRPG----------DGSALQTADRERLQAWCEGRTGFPMVDACMRQL 334

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDS 402
              GW++ R+R +  SF    L + WR    +   Q LD +   +   W Q    +G   
Sbjct: 335 RATGWLNFRMRAMLVSFAAYHLWLHWREPGLFLARQFLDFEPGIH---WSQMQMQSGTTG 391

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           +   RI++P  Q    DPQG ++R W+PE                     S  YP PIVD
Sbjct: 392 INTLRIYSPAKQALDHDPQGEYVRRWVPEFG-------------------SAAYPAPIVD 432

Query: 463 HKKACHHTLNQYYAAKK 479
            + A      + Y  ++
Sbjct: 433 ERAAVAAAKQRLYGLRQ 449


>gi|284035533|ref|YP_003385463.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
 gi|283814826|gb|ADB36664.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
          Length = 561

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 131/280 (46%), Gaps = 29/280 (10%)

Query: 201 FQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPR 257
           +Q  +P F P GE N    L  F +E++  Y      P  + +G S+LSPYL+ G LS R
Sbjct: 234 WQRPNPSFQPGGEYNGHRYLASFLQERIALYAASISKPLASRRGCSRLSPYLAWGCLSIR 293

Query: 258 QCWNRL-----KEEFVDLLIKPKSGAFSWLNELIWREFY---RHLMAFYPSVCMGKPFIP 309
           Q +        K +   L  + +  AF+  + L W   +              + + F  
Sbjct: 294 QVYQAQQQAAKKPQLAGL--RRQLAAFA--SRLRWHCHFIQKFEREERMEFENVNRAF-- 347

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             + +  N +     AW+ G TG+P++DA MR L   G+++ R+R +  SFL   L   W
Sbjct: 348 --DAVPKNVNPDHYAAWRDGRTGYPLVDACMRCLAATGYINFRMRAMLTSFLTHHLFQHW 405

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           + G  +      D +   +    Q  +  TG +++   RI+NP  Q +  DPQG FI+ W
Sbjct: 406 QEGGWHLARLYTDFEPGIHYAQLQMQSGMTGTNTI---RIYNPVKQSQEHDPQGVFIKQW 462

Query: 429 LPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD 462
           +PEL N PT YIH P         ++   + ++YP PI+D
Sbjct: 463 VPELANCPTAYIHQPWTMPPLEQAMEHFQIGIDYPAPIID 502


>gi|149188415|ref|ZP_01866708.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
 gi|148837633|gb|EDL54577.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
          Length = 472

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 184/440 (41%), Gaps = 43/440 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHFIYASL 65
           + W  +DLR+ DNK L  A  + D      F      + +  +      + +  F   +L
Sbjct: 33  IYWFNHDLRLHDNKLLQKASEHVDRLHCVYFDELKTMYDRRFLPVEIDDSAKREFKMQAL 92

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY--NRQYEINEVRRDKLL 123
            ++ +SL Q G V      ++ D+++  L+       +T L+   +  + I+ V    LL
Sbjct: 93  GELNQSLMQLGQVLHQVSVTSLDEAVSQLEQMFDYYSITDLYVANSASWYIDYVVTKALL 152

Query: 124 EKR--LQHRVICKSFDDSVLLP------PGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           ++   + HR   +S     LLP      P S      +M  +  P   +  Q   Q    
Sbjct: 153 KRTDIVLHRDDTESLFHQTLLPFDLEDLPHSFTRFKNKMESIVVP---SPSQTTTQ---- 205

Query: 176 SLPVPAIRLTG-PVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQ 233
            LP P     G P +    P         +      GE   L H+   F  +    Y   
Sbjct: 206 -LPRPMNNRDGLPASYGCEPSSL-----KLHSSVRGGELAGLGHVRDYFATQAALSYKST 259

Query: 234 R-DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWR 288
           R ++     +++ S +L+ G +SPR   N+L         + K G+    +  L EL+WR
Sbjct: 260 RNELDNWSSSTKFSLWLANGNVSPRAVVNQLHR------FEQKHGSNESTYWILFELLWR 313

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E++      Y +       I     +     S L Q W +G T FPI++A M QL   G+
Sbjct: 314 EYFHWYSHKYGAKLFAFGGIQDKRPLTTFYASRLRQ-WVEGNTPFPIVNACMNQLRETGY 372

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R + AS LV +L +DWR G  YF   L+D D+ SN G WQ+ A  G D     R 
Sbjct: 373 MSNRGRQLVASCLVHELSLDWRYGACYFQHMLIDYDVGSNWGNWQYLAGVGADPRGN-RK 431

Query: 409 FNPTIQGKRFDPQGTFIRHW 428
           F+   Q + +DP+  FIR W
Sbjct: 432 FDLDKQSQLYDPESVFIRKW 451


>gi|18857915|dbj|BAB85473.1| CRYPTOCHROME [Sarcophaga crassipalpis]
          Length = 216

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 9/169 (5%)

Query: 313 KIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWR 370
            I W + +H  LQ W QG TGFP+IDAAMRQL   GW+H+ LR   A+FL +  L  +W 
Sbjct: 10  NIPWAQTNHEQLQRWYQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWE 69

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWL 429
            G  YF+  LLD D +   G W W +S+  + +    +   P    KR DP G +I+ ++
Sbjct: 70  HGLRYFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLDPMGQYIKQYV 129

Query: 430 PELNNVPTQYIHAPHSW---LDKND---LSLNYPLPIVDHKKACHHTLN 472
           PEL NVP +YIH P +    + +N    + ++YP  ++D   A    +N
Sbjct: 130 PELANVPKEYIHEPWNMPINVQENSECVIGIHYPERLIDLNVASKRNMN 178


>gi|156752080|gb|ABU93792.1| cryptochrome 3 [Carassius auratus]
          Length = 237

 Score =  110 bits (276), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 108/231 (46%), Gaps = 16/231 (6%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLK 264
           GE  AL  L K    K +  V   + P I   S       LSPYL  G LS R  +  L 
Sbjct: 13  GETEALERLNKHLDRKAW--VANFERPRITAQSLFASPTGLSPYLRFGCLSCRVFYYNLW 70

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHL 322
           E ++ L  +  S   S   +L+WREF+       P+     G P      +I W+ +   
Sbjct: 71  ELYMKLR-RSSSPPLSLFGQLLWREFFYTAGTNNPNFDHMEGNPIC---VQIPWDHNPEA 126

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLL 381
           L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LL
Sbjct: 127 LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLL 186

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           D D + N G W W + +      +F  + P   G+R DP G +IR ++P+L
Sbjct: 187 DADWSVNAGSWMWLSCSAFFQ-QFFHCYCPVGFGRRTDPSGDYIRRYIPKL 236


>gi|71023669|ref|XP_762064.1| hypothetical protein UM05917.1 [Ustilago maydis 521]
 gi|46101498|gb|EAK86731.1| hypothetical protein UM05917.1 [Ustilago maydis 521]
          Length = 623

 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 117/247 (47%), Gaps = 25/247 (10%)

Query: 242 TSQLSPYLSIGVLSPR---QCWNRLKEEFVDLL--IKPKSGAFSWLNELIWREFYRHLMA 296
           +++    L++G+LSPR   Q    L     D       K G +  + EL+WR+++  +  
Sbjct: 326 STKFGAALALGLLSPRLIAQKATELDNATHDATHNASNKGGGYWIIFELLWRDYFYFVGW 385

Query: 297 FYPSVCMGKPFI--------PWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQ 342
            + S       I          ++  EW   + L         W    TG P+IDA M +
Sbjct: 386 KFGSKLFSLRGIEDDISARSAPSKASEWKSSASLSDRDDGFVRWCTAQTGVPLIDANMVE 445

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           +   G+M NR R   ASFL KDL  +WR G E+F S L+D +  SN G WQ+ A  GND 
Sbjct: 446 MVQTGFMSNRGRQNVASFLTKDLGWNWRHGAEFFESWLVDYEPNSNWGNWQYVAGVGNDP 505

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLNYP 457
               R FNP  QG  +D  G ++  WLP L+++P QY H P      +W ++   +   P
Sbjct: 506 RSS-RQFNPIKQGNDYDANGEYVATWLPLLSDMPPQYRHHPWTCPDAAWAEQAHSAHYPP 564

Query: 458 LPIVDHK 464
            PIV+ +
Sbjct: 565 TPIVEQQ 571


>gi|153831330|ref|ZP_01983997.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39]
 gi|148873186|gb|EDL71321.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39]
          Length = 180

 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 2/157 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164
            + I   +FDD  +LPPGS+     + +KV+TPF++A
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRA 156


>gi|317969609|ref|ZP_07970999.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
          Length = 480

 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 133/279 (47%), Gaps = 32/279 (11%)

Query: 206 PMFPIGEQNALHILRKFCK---EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
           P+   G   AL  L +F +    + YY+  +   P+ + TS LSPYL  GV+SPRQC  R
Sbjct: 106 PIPKAGTDAALGRLDRFLEGSDSRTYYW--ELSYPSAKVTSGLSPYLKFGVVSPRQCLQR 163

Query: 263 L-------KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
           L       KE      ++     FS    L W         + P + +   +  + ++  
Sbjct: 164 LTAAGLRAKENADRSRLRSIQQLFS---RLRWGCSIHQRFRYLPQLELRSLWSAFDQESA 220

Query: 316 WNKDS-HLLQAWKQGYTGFPIIDAAMRQL-NTIGWM--HNRLRMITASFLVKDLLVDWRI 371
            +     L +AWK+G TGFPI+DAA   L    GW+  + R R I ASFL     +DWR 
Sbjct: 221 LSAQQIELYEAWKEGRTGFPIVDAAANCLRGGGGWLELNFRSRAIYASFLSNLCGIDWRY 280

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTG---NDSVPYFRIFNPT-IQGKRFDPQGTFIRH 427
           G  +FM  L+DGD   ++  +QWA   G        +  I++P  +   R DP G FIR 
Sbjct: 281 GALHFMRHLIDGDCPIDH--YQWAMQAGATYRGRKAWTPIYHPGQVAVNRCDPHGLFIRR 338

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           WLP+L  +    +  P ++ D       YP P++++++A
Sbjct: 339 WLPQLERLTNDQLGEPPAFAD-------YPAPVLNYEEA 370


>gi|313228122|emb|CBY23272.1| unnamed protein product [Oikopleura dioica]
          Length = 168

 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 93/166 (56%), Gaps = 8/166 (4%)

Query: 314 IEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
           I W+K+   L  A++   TGFP +DA + +L T G + +  R+  A+FL K L VDWR G
Sbjct: 4   IWWSKNQKELFAAFEDARTGFPFVDAMVTELKTRGDVRHWARLCLANFLTKVLHVDWRHG 63

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           E++F   L+D D   NNG WQ+   TG        I+NP  Q K+FD  G +I+ WLP L
Sbjct: 64  EKFFARHLVDYDPIVNNGNWQYCGGTGTGIAHRPDIYNPWNQSKKFDKNGEYIQKWLPFL 123

Query: 433 NNVPTQYIHAPHSWLDKNDL----SLNYPLPIVDHKKACHHTLNQY 474
             V   ++HA   W DK+ L     L+Y  P+V++ KA  ++L  +
Sbjct: 124 AKVGPAHLHA---WEDKHKLYNLSKLDYVKPVVEYAKAREYSLKMF 166


>gi|294339498|emb|CAZ87857.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As]
          Length = 493

 Score =  110 bits (275), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 193/490 (39%), Gaps = 63/490 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ LVW + DLR+ D+ AL+AA        +A+F+  PE        A+   F    +  
Sbjct: 3   TLALVWFKRDLRVQDHAALHAA--AQCDAALALFVMEPEWIASPECDAQHVQFAADCVSA 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           +Q+SL+  G+           D  +  +    + R T LF + +        RDK    R
Sbjct: 61  LQESLAGLGLRL----LVRVGDVPQVFEDIRREVRFTHLFSHEETGPGWTYARDK----R 112

Query: 127 LQHRVICKSFDDSVLL---PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AI 182
           + H   C+  +  V+    P   ++            +++ +       D   LPVP A+
Sbjct: 113 VAH--WCR--EQGVIWQEWPQNGVVRRLRDRAGWAARWQRRM-------DAPQLPVPQAL 161

Query: 183 R-LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239
           R  + P+   + P   D    A  PM   G   AL  L  F   +   Y      P  A 
Sbjct: 162 RDASKPLAAGDFPALRDLRLPAARPMSAAGTAAALSTLHSFLDTRGAQYRRDLSSPLTAE 221

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWREFYR 292
           +G S+LS +L+ G LS RQ     ++    L    ++ A S       +   L W   + 
Sbjct: 222 RGCSRLSAHLAFGTLSMRQVHQATEQRIRALQASGEAPARSMAYHLRGFAGRLRWHCHFM 281

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             +   P +        +    E   +    +AW  G TGFP++DA MR LN  GW++ R
Sbjct: 282 QKLEDEPGIEFHNFARAYDGLREPEFNPAYFEAWCSGNTGFPMVDACMRCLNATGWINFR 341

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA---STGNDSVPYFRIF 409
           +R +  SF    L + WR    +   Q LD +      G  W+     +G   +   R++
Sbjct: 342 MRAMLVSFAAYHLWLHWREPGLHLARQFLDFE-----PGIHWSQMQMQSGTTGINTLRVY 396

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
           +P  Q    DPQG FIR W+PE                        YP PIV+ + A   
Sbjct: 397 SPAKQQADHDPQGEFIRQWVPEWGTS-------------------AYPPPIVNERSAVKQ 437

Query: 470 TLNQYYAAKK 479
             ++ YA ++
Sbjct: 438 AKDRIYAIRQ 447


>gi|310791128|gb|EFQ26657.1| DASH family cryptochrome [Glomerella graminicola M1.001]
          Length = 705

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 140/548 (25%), Positives = 220/548 (40%), Gaps = 101/548 (18%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFI------------------A 43
           TA ++ +   R+DLRI DN  ++     SD     V+ +++                   
Sbjct: 2   TATNILIYLFRHDLRIADNPIIHHLSTASDHGFTHVLPIYVFPAHQIEISGFLREGSKSP 61

Query: 44  TPEQWRQHG----ISARQSHFIYASLLQVQKSLS--QKGIVFQYHQCSNFDDSIEWLDSY 97
            PE   Q G        ++ F+  S+  +++SL     G+  +  +  +  D +  L S+
Sbjct: 62  YPEARSQIGKFWRCGPHRTKFVAQSVWNLKESLESVHSGLALRAGKFGDVVDDL--LRSF 119

Query: 98  C-LQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILN--HALQ 153
              +Q+V  ++   +  + E R +K +    + H V  K++ D         L+     +
Sbjct: 120 ADKKQKVGAVWMTAEESVEEKRDEKAVSAACEKHGVAFKTWTDEKYFIDDRDLHFESPSE 179

Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV----------TPSNIPRFFDY---- 199
           +  V+T FRK   + L +    +LP P      P           TP  IP  +D     
Sbjct: 180 LADVFTAFRKTQ-EPLREKPRPTLPHPKKGSLPPYPDQSIIPPQRTPFQIPSTYDALEAA 238

Query: 200 -------PFQAIDPMFP----------IGEQNALHILRKFCKE-KVYYYVEQR-DIPAIQ 240
                  PF   +P FP           GE  A+  L    K   V  Y + R ++  + 
Sbjct: 239 LLKPLKSPFNE-EPKFPENAKSVHPFKGGEDFAIERLEHLVKTGSVSSYKDTRNEMLGVD 297

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLN--------ELIWREF 290
            +++LS YL++G L+ RQ    L   E+  D   K   G     N        EL+WR++
Sbjct: 298 FSTKLSAYLALGCLTSRQIHEALVKYEDGQDDRFKETPGYGKGENDGTKAVRFELLWRDY 357

Query: 291 YR-HLMAFYPSV-CMGKPFIPWTEKIEWNKDSH----------------LLQAWKQGYTG 332
            R   M F   + C+       T K +     H                +LQ +  G TG
Sbjct: 358 MRLCTMKFGAKLFCVTGFKNDTTPKWKSADPEHVVSEDNLGTPVDDVQKILQRFLNGTTG 417

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
             +IDA+ R+L   G+  NR R   ASFL K L +DWR G E++   L+D D+ SN   W
Sbjct: 418 MGLIDASQRELYHTGYTSNRARQNVASFLTKHLGIDWRYGAEWYEYLLVDYDVNSNWSNW 477

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-----QYIHAPHSWL 447
           Q+ A  GND     RIFNP  Q   +D  G +++ W+ E   V       Q    P   L
Sbjct: 478 QYVAGVGNDPRGDNRIFNPVKQAFDYDKTGEYVKAWVVETREVENLENVFQLWTTPQEEL 537

Query: 448 DKNDLSLN 455
           ++  LS N
Sbjct: 538 ERLGLSKN 545


>gi|328470041|gb|EGF40952.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
          Length = 338

 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 114/235 (48%), Gaps = 28/235 (11%)

Query: 207 MFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           +F  GE + L H  R F       Y E R+ +  +  +++ SP+L++G +SPR  +  LK
Sbjct: 91  LFSGGEWSGLAHCRRYFSSGLASSYKETRNGLDGMAYSTKFSPWLALGCVSPRMIYAMLK 150

Query: 265 EEFVDLLIKPKSGAFSWLN----ELIWREF-------YRHLMAFYPSVCMGKPFIPWTEK 313
           +       +   GA    N    EL+WRE+       Y+  +  +  +    P   +   
Sbjct: 151 Q------YEQTQGANDSTNWIYFELLWREYFYWYARCYQQRLFRFGGIRNQPPLTSFY-- 202

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
                 +H  Q WK G T + I++A M QLN  G+M NR R + AS LV +L +DWR G 
Sbjct: 203 ------AHRFQQWKNGTTPYLIVNACMHQLNHTGYMSNRGRQLVASCLVHELGLDWRYGA 256

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
            +F +QL+D D+ SN G WQ+ A  G D     R FN   Q + +DP   FI  W
Sbjct: 257 AHFETQLIDYDVGSNWGNWQYLAGVGADPRGS-RQFNLEKQTQMYDPNHEFIERW 310


>gi|323455593|gb|EGB11461.1| hypothetical protein AURANDRAFT_20741 [Aureococcus anophagefferens]
          Length = 529

 Score =  110 bits (274), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 124/260 (47%), Gaps = 25/260 (9%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLL-IKPKSGAFSWLNELIWREF-----YRHLM 295
           T+ LSPYL  G +S R    RL + +      +P +   S L +L +RE       +H  
Sbjct: 255 TTVLSPYLKFGCVSARLFRARLADVYAGGSHAQPPT---SLLGQLYFREMAYANALKHGA 311

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           AF  S       IPW +       +  L+AW+ G TG+P +DAAMRQL   GW+H+  R 
Sbjct: 312 AFAASPSPVCADIPWDDPATDAAAAARLRAWEAGETGYPFVDAAMRQLRETGWIHHLARH 371

Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
             A FL + DL + W  G   F   LLD D A NN  W   A   + S P+FR+++P   
Sbjct: 372 AVACFLTRGDLWLPWTEGARVFDRDLLDADWAVNNFNWLGLAGVASWSPPFFRVYSPVPN 431

Query: 415 GKRF-----DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NYPLPIV 461
            K+      D  G ++  ++PEL  +P +Y +AP  W     +           YP P+V
Sbjct: 432 HKQSSLNVDDAAGAYVDRFVPELRKLPAKYKYAP--WTAPAAVLAAAGVVLGDTYPRPLV 489

Query: 462 DHKKACHHTLNQYYAAKKQS 481
           DHK      + ++  A++++
Sbjct: 490 DHKVQSKDNIARFKEAQQRN 509


>gi|159043774|ref|YP_001532568.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
 gi|157911534|gb|ABV92967.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
          Length = 514

 Score =  109 bits (273), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 125/285 (43%), Gaps = 28/285 (9%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNR--LKEE 266
           G   AL +L  F  E+   Y      P    +  S+LSP+L++G LS R+      +++ 
Sbjct: 192 GRDEALSLLGGFLTERGRTYRAAMANPLDGAEACSRLSPHLALGTLSGREAVQAAAMRKA 251

Query: 267 FVDLLIKPKSGAF-SWLNELIWREFYRHLMAFYPSV---CMG------KPFIPWTEKIEW 316
            V        GA  S+   L WR+ +   +   P +   C+       +P +P       
Sbjct: 252 EVKGTRDGWIGAMKSFEARLAWRDHFMQKLEDAPRLEHACLHSAYEGLRPAVP------- 304

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
             D   L AW +G TG P +DA MR L   GW++ R R +  +     L +DWR      
Sbjct: 305 --DPVRLGAWAKGETGLPFVDACMRSLIATGWLNFRARAMLVAVASYHLWLDWRASGTIL 362

Query: 377 MSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
                D +   +   W Q    +G   +   RI+NP  QG   DP+G F R WLPEL  V
Sbjct: 363 GRYFTDFEPGIH---WPQVQMQSGTTGMNTVRIYNPVKQGHDNDPEGVFTRRWLPELAEV 419

Query: 436 PTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P +Y+  P  W   +  L+  YP PIV+ K A     ++ +A ++
Sbjct: 420 PDRYLQEPWRWEGADSVLNRTYPAPIVEPKAAAAAARDKVWAVRR 464



 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
          LVW + DLR+ D+ AL  A   +   V+ V+I  PE W+   +SARQ  F    +  + +
Sbjct: 8  LVWFKRDLRVADHPALARAA--ALGPVLPVYIVEPEYWQLRDVSARQWAFTRECVADLSR 65

Query: 71 SLSQKG 76
           L+  G
Sbjct: 66 ELAALG 71


>gi|284799906|ref|ZP_05985171.2| deoxyribodopyrimidine photolyase [Neisseria subflava NJ9703]
 gi|284796575|gb|EFC51922.1| deoxyribodopyrimidine photolyase [Neisseria subflava NJ9703]
          Length = 428

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 192/454 (42%), Gaps = 57/454 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LR+ DN AL AA   S   +  V+++   Q      + RQS F Y +  ++  
Sbjct: 24  LVWFRRNLRLHDNAALNAAV-ASGLPITCVWVS---QRPSENHNPRQSLFHYQAAQELHT 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L+   I    +  ++ +D +    +      +T    +  Y   E+R+D  L     Q 
Sbjct: 80  RLAAHHIPL--YVVASDEDLLPLAAALNAHTVIT----DEAYTEAEIRQDNHLWHNFDQA 133

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +  +D  +L    +++     Y  +  +++A +Q           +P         
Sbjct: 134 GIALQHANDRGILAKSPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETKLPV------QI 187

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             N+P F  +    +      GE  AL     F +  V+Y + Q + PA + TS L+ YL
Sbjct: 188 GQNVPLFPAHTGAVLPAYQQSGETAALTQWHAFKQNLVHYPITQ-NFPARKNTSLLNAYL 246

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSVCMGKP 306
           S G +SPR             L+  +S A   F WL++LI+R+ Y + +A++  +     
Sbjct: 247 SAGCISPR-------------LLAAESLANRHFEWLDKLIFRD-YCYQLAYHRRLPETTD 292

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P  E             W+ G TG PIIDA++R L   G +H  L+ + A +    L 
Sbjct: 293 AAPVREY------------WRHGQTGVPIIDASIRGLEATGHLHPVLQQLCAHYFCHALN 340

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
            D   G  +  S     D A N   W  AA     +V Y        +  + DP G++IR
Sbjct: 341 FDPNQGIAWTASVQTGTDPALNQANWHLAAQ-DTATVRYAH------RSHQIDPDGSYIR 393

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLP 459
            +LPEL ++P+  IH P  W   +D+  + YP P
Sbjct: 394 SYLPELAHLPSTLIHTP--WAAADDIDTHGYPFP 425


>gi|156383455|ref|XP_001632849.1| predicted protein [Nematostella vectensis]
 gi|156219911|gb|EDO40786.1| predicted protein [Nematostella vectensis]
          Length = 513

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 122/494 (24%), Positives = 198/494 (40%), Gaps = 71/494 (14%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W R DLR+ DN AL  +  N  A    V+   P   ++  +S  +  F+  SL  +  +L
Sbjct: 21  WFRKDLRLHDNPALLESFKNCQA-FYGVYFLDPASVQRSNLSPNRWWFLLESLRDLDYNL 79

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL---LEKRLQH 129
              G      +     +  + LD    Q  + +L      E    +RD +   L K L  
Sbjct: 80  RSLGSRLLVVRGQPVQEMPKLLD----QWNIKRLTLEYDSEPPAKQRDAVVTHLAKNLGV 135

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK-------ALIQNLVQADLRSLPVPAI 182
            VI +             ++H L  Y V T              +    A+    P P  
Sbjct: 136 EVIQR-------------VSHTL--YDVETVLETNDGKLPMTFDEMAKTAEQLGPPCPPC 180

Query: 183 RLTG---------PVTPS-----NIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFC 223
           +            PV P       +P   ++  + +        +  GE  AL  L    
Sbjct: 181 QTVDKTVFGACLTPVGPDHADKYGVPLLSEFGMKELKEATAKKYWTGGEPEALRRLSAAL 240

Query: 224 KEKVYYYVEQRD---IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
           K+      E+R           + LSPY+  G LSPR  + +L   ++    K      +
Sbjct: 241 KKCAENDFEERGWTIDEMFSNDAHLSPYMRFGCLSPRLYYQQLALTYMK--EKKSIPPAT 298

Query: 281 WLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
               L+ RE + H+ +    +   +  P    + +  W ++   L+ WK+G TGFP IDA
Sbjct: 299 LFTGLVRRELFLHVASHNADLDKMLDNPL---SVQFPWEENKEGLERWKEGKTGFPWIDA 355

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GW+H+  R     FL +  L V W  G + F    LD + + N   W W + 
Sbjct: 356 IMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNASNWLWLSC 415

Query: 398 TG--NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI----HAPHSWLD--K 449
           +   + +VP+   + P   GK+ DP G +I+ ++PE+  +P++Y+    +AP S     +
Sbjct: 416 SSYVHGAVPW---YCPVEVGKKVDPTGDYIKRYVPEVRGLPSEYVCEPWNAPLSVQKACR 472

Query: 450 NDLSLNYPLPIVDH 463
             +  +YP PIVDH
Sbjct: 473 CVVGEDYPSPIVDH 486


>gi|312211632|emb|CBX91717.1| hypothetical protein [Leptosphaeria maculans]
          Length = 709

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 134/309 (43%), Gaps = 40/309 (12%)

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPAI-- 239
           L GP     +P   +   +        GE  AL  L K    + Y   + + +  P    
Sbjct: 259 LAGPNGDFAVPTMKELGLKLATSTHRGGETLALEALEKIIANEEYTATFEKPKTAPTAFE 318

Query: 240 -QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY---RHLM 295
            Q T+ LSP+L  G LS R+ + R+++       K      S   +L++R+ Y   +  +
Sbjct: 319 PQATTLLSPHLHFGSLSCREFYWRVQDVVDRFKGKASQPPTSLTGQLLFRDMYFGAQAAL 378

Query: 296 AFYPSVCMGKP---FIPWTEKIEWNKDSHL---------------LQAWKQGYTGFPIID 337
            +  S     P   FIPW    + +  S +                + WK+G TGFP ID
Sbjct: 379 GYSFSQTYNNPQCRFIPWHLPSKIDIKSSMTTGEYLVDDAEAEIHFKRWKEGCTGFPWID 438

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A MRQL   GW+H+  R   A FL +    +DW  G E F   L+D + A N G WQW +
Sbjct: 439 ALMRQLKREGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLS 498

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456
            T      +FR ++P    +++D +G F++ ++PEL     +YI+ P            +
Sbjct: 499 CTAF-FAQFFRCYSPIAFPQKWDKEGEFVKRYVPELAKFDKKYIYEP------------W 545

Query: 457 PLPIVDHKK 465
             PI D KK
Sbjct: 546 KAPIADQKK 554


>gi|20336481|gb|AAM19303.1| cryptochrome-2 [Gallus gallus]
          Length = 266

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 8/160 (5%)

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371
           +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  
Sbjct: 10  QIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWES 69

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G   F   LLD D + N G W W + +      +F  + P   G+R DP G +++ +LP+
Sbjct: 70  GVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVKRYLPK 128

Query: 432 LNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465
           L   P++YI+ P +  +      K  + ++YP P+V+H +
Sbjct: 129 LKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAE 168


>gi|330951090|gb|EGH51350.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae Cit 7]
          Length = 108

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 66/96 (68%), Gaps = 1/96 (1%)

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           +DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G FI+ WLPEL ++  + I
Sbjct: 1   IDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQI 60

Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           H P S +     + +YP PIVD  K+    L  + A
Sbjct: 61  HDP-SLIGDLFGAADYPKPIVDLSKSRARALAAFKA 95


>gi|189188250|ref|XP_001930464.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972070|gb|EDU39569.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 655

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 131/309 (42%), Gaps = 40/309 (12%)

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPAI-- 239
           L GP     +P   +   +        GE  AL  L +    + Y   + + +  P    
Sbjct: 213 LAGPNGDFAVPTMEELGLKPATTAHRGGETEALRALDEIIANEEYTATFEKPKTAPTAFE 272

Query: 240 -QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY---RHLM 295
            Q T+ LSP++  G LS R  + R ++       K      S   +L++R+ Y   +  +
Sbjct: 273 PQSTTLLSPHMHFGSLSCRLFYWRAQDVVDKFKGKASQPPVSLTGQLLFRDMYFGAQAAL 332

Query: 296 AFYPSVCMGKP---FIPWTEKIEWNKDSHLL---------------QAWKQGYTGFPIID 337
            +        P   FIPW    + +  S L+               Q WK G TGFP ID
Sbjct: 333 GYSFGQTYNNPNCRFIPWHLPSKIDTKSGLITGEYMVDNAEAEAHFQRWKHGQTGFPWID 392

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A MRQL   GW+H+  R   A FL +    +DW  G E F   L+D + A N G WQW +
Sbjct: 393 ALMRQLAQEGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLS 452

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456
            T      ++R ++P    +++D +G  +R ++PEL     +YI+ PH            
Sbjct: 453 CTAF-FAQFYRCYSPIAFPQKWDKEGKLVRKYVPELAKFDKKYIYEPHK----------- 500

Query: 457 PLPIVDHKK 465
             PIVD KK
Sbjct: 501 -APIVDQKK 508


>gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula]
          Length = 517

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 52/279 (18%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL------- 263
           GE  AL  L  FC  +    +    +  +     LSPY+  G LS RQ +++L       
Sbjct: 238 GETEALSRLSSFCSRRAA--IPNEPVHWLMSKDTLSPYIKFGCLSVRQLFSQLLQFASTS 295

Query: 264 --KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP--------SVCMGKPFIPWTEK 313
              +E  +LL K           L+ REF   + +  P        S+C+  P       
Sbjct: 296 SKGQELFELLTK----------NLLLREFAFLVGSSSPKFDVMEGNSLCIQLP------- 338

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIG 372
             W  ++  +QA++ G TG+P IDA +RQ+   GW H   R   A FL +  L + W +G
Sbjct: 339 --WESNNVFIQAFRNGQTGYPWIDAIIRQIRQDGWAHFLARQSIAVFLTRGYLWISWVLG 396

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           +E+F   ++D +L  ++  W  ++ +G         ++P + GK+ D  G +I+ ++PEL
Sbjct: 397 KEFFQEFMIDFELPVSSVCWMQSSCSGFFCT-QIESYDPCLVGKQIDTDGHYIKTYVPEL 455

Query: 433 NNVPTQYIHAP---------HSWLDKNDLSLNYPLPIVD 462
            + P++Y+H P          SWL   +    YP PI+D
Sbjct: 456 KDFPSEYVHQPWKCSSLHTEASWLCDRE---QYPKPIID 491


>gi|90085022|dbj|BAE91252.1| unnamed protein product [Macaca fascicularis]
          Length = 278

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 87/165 (52%), Gaps = 8/165 (4%)

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLV 367
           P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL +
Sbjct: 5   PICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWI 64

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W  G + F   LLD D + N G W W  S  +    +F  + P   G+R DP G +IR 
Sbjct: 65  SWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRR 123

Query: 428 WLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466
           +LP L   P +YI+ P +       + K  + +NYP P+V+H +A
Sbjct: 124 YLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEA 168


>gi|320589803|gb|EFX02259.1| DNA photolyase [Grosmannia clavigera kw1407]
          Length = 893

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 6/132 (4%)

Query: 307 FIPWTEKIEWNKD------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           F P  +  +W+++      ++ L+ W+ G TG  +IDA+ R+L   G+  NR RM+ ++F
Sbjct: 458 FSPRADMADWDQEQSPEQTANYLRRWQLGTTGLSLIDASQRELMYTGFTSNRARMVVSNF 517

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
             K + +DWR G E++   L+D D+ SN G WQ+AA  GND     R  NP  Q   +DP
Sbjct: 518 FAKRMQIDWRCGAEWYEMMLMDYDVYSNWGNWQYAAGVGNDPRGIERDLNPVKQAFDYDP 577

Query: 421 QGTFIRHWLPEL 432
           +G ++R WLPE+
Sbjct: 578 KGLYVRAWLPEV 589


>gi|145605082|ref|XP_365369.2| hypothetical protein MGG_02071 [Magnaporthe oryzae 70-15]
 gi|145012947|gb|EDJ97588.1| hypothetical protein MGG_02071 [Magnaporthe oryzae 70-15]
          Length = 614

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 132/497 (26%), Positives = 197/497 (39%), Gaps = 103/497 (20%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS------ 64
           + W R DLR+ D+ AL AA     A +  +F   P             H++Y S      
Sbjct: 7   IYWFRTDLRLHDSPALQAALDLDPAVLWPIFTWDP-------------HYVYRSRGGLNR 53

Query: 65  ---LLQVQKSLS---------QKGIVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYNRQ 111
              LL  Q  LS          K  V +    S F    + W        +VT L + + 
Sbjct: 54  WQYLLDCQNDLSASITNLNPRSKLFVLREAPQSLFPKLFKAW--------KVTHLVFEKD 105

Query: 112 YEINEVRRDKLLEKRLQH---RVICK---SFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
            +    +RD++++K  Q    +VI +   +  DS  +   +     + M ++ T      
Sbjct: 106 TDAYARQRDEVVKKAAQAAGVKVITRYGRTLWDSDAIVKANGGEPTMSMARLRT------ 159

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
               V A + S+P P         P  +P  F+          P   Q+     R   KE
Sbjct: 160 ----VGAKVGSIPRPIPAPKALPDPGEMPLDFNLDL-------PDVGQDYNAKWRSEGKE 208

Query: 226 KVYYYVEQRDIP-AIQGTSQL------SPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSG 277
           K Y  +   +   AI+   +L      +PY     L+ R+    ++ ++ VD   + K  
Sbjct: 209 KAYGAIAGPNGDFAIETLEELGYPPATTPYKGGESLALRELDAIIENQDTVDAYNQAKKK 268

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGK-----------PFIPW---------------T 311
             S   E +  +     M F     +G             FIPW                
Sbjct: 269 GASLPPESLTGQLLFRDMYFAAQAAIGPCFSQTAGNAHCRFIPWHLPSHVEDNAVSGQVL 328

Query: 312 EKIEWNKDSHLLQAW----KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LL 366
            K E+  DS   ++W    + G TGFP IDA MRQL   GW+H+  R   A FL +    
Sbjct: 329 RKFEYEVDSEQAESWFRRWEAGQTGFPWIDALMRQLRVEGWIHHLGRHSVACFLTRGGCY 388

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           V W  G + F   LLD + A N G WQW + T   S  YFR ++P   GK++DP GTFIR
Sbjct: 389 VSWERGLDVFEELLLDHEPACNAGNWQWLSCTAFFSQ-YFRCYSPISFGKKWDPDGTFIR 447

Query: 427 HWLPELNNVPTQYIHAP 443
            W+PEL ++  +YI+ P
Sbjct: 448 KWVPELASLDKKYIYEP 464


>gi|260772995|ref|ZP_05881911.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio metschnikovii CIP 69.14]
 gi|260612134|gb|EEX37337.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio metschnikovii CIP 69.14]
          Length = 492

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 200/472 (42%), Gaps = 42/472 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +TT  S+++VW + DLR++D+  L AA  +S    + V+   P        S R   F
Sbjct: 1   MMSTT--SINIVWFKRDLRLSDHPPLCAAL-DSGIPTLLVYFFEPMLLNDRHYSERHWRF 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYNRQYE-INEVR 118
           ++ SL  + + L+  G     HQ    + S E  L +      +  L+ +++   +N   
Sbjct: 58  VWQSLQDINQQLASFG-----HQILIANVSAEQGLATLAAHFSIQGLYSHQEVGLVNTFE 112

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           RD  ++     + I  S+  S     G++   A         ++  +   L   ++ +  
Sbjct: 113 RDIAIQHWCTEQGI--SWHQSAY---GAVRRAATHRQGWDKHWQAIMRAPLAMPNITTQG 167

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           + ++  T     +N+P  +    + +      GE  A   L  F + +   Y  Q   P+
Sbjct: 168 LISVCATDLGLDNNVPSAWRRKEKGLQTG---GETLAKQTLEDFFQRRAKNYYFQISSPS 224

Query: 239 IQ--GTSQLSPYLSIGVLSPRQC-------WNR--LKEEFVDLLIKPKSGAFSWLNELIW 287
           +     S++SPYL+ G +S R+        WN   L+   + L     +    W    I 
Sbjct: 225 LARLSCSRMSPYLAWGNISLREMYQTLLSYWNAAGLRRSLIAL-----ASRLHWHCHFIQ 279

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           +      M F    C+ + + P   +     D+ LL+AWK G TG P++DA MR L   G
Sbjct: 280 KFESECEMEFR---CVNRAYEPLLAQ-ACQPDTELLEAWKSGQTGIPLVDACMRCLYHTG 335

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +++ R+R +  S L   +  +WR G  +     LD +   +   +Q  A  G   +   R
Sbjct: 336 YLNFRMRAMLVSVLTHHMNQNWRAGVGHLAQLFLDFEPGIHYAQFQMQA--GVTGINTIR 393

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
           I+NP  Q +  D QG FIR W+PEL  VP   +  P  W      ++ Y LP
Sbjct: 394 IYNPIKQAQEHDAQGVFIRQWVPELAEVPLSLLFEP--WQMSPMEAMMYQLP 443


>gi|171684045|ref|XP_001906964.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941983|emb|CAP67635.1| unnamed protein product [Podospora anserina S mat+]
          Length = 813

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 5/141 (3%)

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
           + +L+ +  G TG  +IDA+ R+L   G+  NR R   ASFL K L +DWR G E++   
Sbjct: 499 AKILERFNLGTTGMGLIDASQRELLHTGYTSNRARQNVASFLAKHLDIDWRYGAEWYEML 558

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-- 437
           L+D D++SN   WQ+ A  GND   + RIFNP  QG  +DP G+++R W+PE++ +    
Sbjct: 559 LVDYDVSSNWANWQYVAGVGNDPRGHMRIFNPVKQGFEYDPSGSYVRTWIPEVSGLEKLE 618

Query: 438 ---QYIHAPHSWLDKNDLSLN 455
              Q   A    L+K  LS N
Sbjct: 619 NAFQPWTASKEELEKTGLSGN 639


>gi|163756026|ref|ZP_02163142.1| putative deoxyribodipyrimidine photolyase [Kordia algicida OT-1]
 gi|161323900|gb|EDP95233.1| putative deoxyribodipyrimidine photolyase [Kordia algicida OT-1]
          Length = 495

 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 210/491 (42%), Gaps = 52/491 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M     + +++V  + DLR+ DN+A++ A  ++  K + +F+           S R  +F
Sbjct: 1   MNTQNKIEINVVLFKRDLRLQDNEAIHNAL-STGKKTLLLFVFEDILLNDPHYSERHWNF 59

Query: 61  IYASLLQVQKSL----SQKGIVFQYHQCSNFDDSIEWL-DSYCLQQRVTKLFYNRQYEIN 115
           I  SL+ +  SL    S+  IV      SN + +++ + ++Y    ++T LF +++  I 
Sbjct: 60  IKESLIDLNNSLIAYNSEILIV-----RSNINRTLQIIQETY----KITHLFSHQETGIK 110

Query: 116 EV-RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
               RDK+L++ L + +I             +I N   +  +  T + +   +N +   L
Sbjct: 111 VTYDRDKMLKRFLANNMITWV---------ENINNGVFRGLQDRTDWIEKW-ENFMNQPL 160

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--MFPIGEQN-ALHILRKFCKEKVYYYV 231
            S      +L       ++  FF  P    +P  +F  G    AL     F +++   Y 
Sbjct: 161 LSFLPKKDQLFTKKEVQHLASFFHVPSLETNPDTLFQKGGTTMALKYKNTFFRDRGKNYN 220

Query: 232 EQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-----SGAFSWLNE 284
                P  A +  S+LSPYL+ G LS R+         ++  I PK          W   
Sbjct: 221 HHISKPLLARRSCSRLSPYLAWGNLSVREVIQETTR-CIEQNIYPKQMESFGSRLRWQAH 279

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
            I +      M F   V + K +     K++       ++AWK G TG+P++DA MR L 
Sbjct: 280 FIQKFEMEDEMEF---VSINKGY----RKLKKRVSERYIEAWKNGMTGYPLVDACMRCLK 332

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+++ R+R +  SF   +L   W+          LD +   +    Q  A  G   + 
Sbjct: 333 ETGYLNFRMRALVVSFFTHNLWQPWQKATVILSQYFLDFEPGIHFPQIQMQA--GETGIN 390

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458
             R++NPT  G   DP+G FI+ W+PEL  + T ++H P              L  +YP 
Sbjct: 391 MLRMYNPTKNGIAHDPEGIFIKKWVPELAELDTAFVHEPSKMTPMEQQMANFILGKDYPK 450

Query: 459 PIVDHKKACHH 469
           PIV+ ++   H
Sbjct: 451 PIVNLQETRKH 461


>gi|119468403|ref|ZP_01611494.1| putative deoxyribodipyrimidine photolyase [Alteromonadales
           bacterium TW-7]
 gi|119447911|gb|EAW29176.1| putative deoxyribodipyrimidine photolyase [Alteromonadales
           bacterium TW-7]
          Length = 509

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 113/477 (23%), Positives = 216/477 (45%), Gaps = 50/477 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW + DLR++D++ L +A  ++    + ++   P        + R   F+Y S++ +
Sbjct: 5   INIVWFKRDLRLSDHQPLKSAF-DTGLPTLLIYNFEPLLLEDAHYNERHWRFVYQSIVDL 63

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126
              L++    V+ +++  N    ++ L+    Q  ++ +F +++  +N    RD  ++  
Sbjct: 64  NSQLARFNAKVYTFNE--NMQTLLQKLNG---QFEISYIFSHQEIGLNNTFERDLAIKAW 118

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             H  I  ++ +S   P G+++            ++K +   L   + ++  V +++L  
Sbjct: 119 CHHNHI--NWQES---PTGAVIRGKKNRDNWNERWQKTMQAPLAIPNWKN--VNSVKLKN 171

Query: 187 PVTPSNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242
              P  +P  +   D  FQ   P+      +A  +++ F  ++   Y +    P++  T 
Sbjct: 172 YKNPE-LPETYTQDDDNFQQGGPL------HAREVMQSFFTQRGKGYQKGISSPSLSRTH 224

Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW---LNELIWR-EFYRHLMAF 297
            S+LSPYL+ G +S RQ +    +  +D           W   L   + R  ++ H M  
Sbjct: 225 CSRLSPYLAWGNISLRQVY----QTAIDAYHSNHPDKKGWKRPLAAFVSRLHWHCHFMQK 280

Query: 298 YPSVCMG--KPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           + S C    K   P      +  D H+   ++ W QG TG PIIDA MR L   G+++ R
Sbjct: 281 FESECTMEFKALNPGYHSFPYRTDKHVKHDIERWAQGQTGVPIIDACMRCLKATGYINFR 340

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNP 411
           +R +  SF+   L + W+       +  LD +   +    Q  AS TG +++   R +NP
Sbjct: 341 MRAMLVSFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVTGINTI---RHYNP 397

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD 462
             Q +  DP G FI+ W PEL  +P +Y+H P       +  +   L  +YP P++D
Sbjct: 398 IKQSEDQDPTGAFIKKWCPELEKLPIEYLHEPWEQTPMEALFNDFKLGEDYPEPMLD 454


>gi|148976255|ref|ZP_01812979.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium
           SWAT-3]
 gi|145964349|gb|EDK29604.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium
           SWAT-3]
          Length = 497

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 194/449 (43%), Gaps = 38/449 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++++VWL+ DLR+TD+  L  A  +     I ++I  P        S R   F++ SL  
Sbjct: 3   TINVVWLKRDLRLTDHAPLQHAL-SDQYPTILLYIFEPMLLNNAHYSERHWRFVWQSLQC 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDS-IEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + +SL   G     HQ S    S ++  ++   +  +  LF +++  +N    RD+ L  
Sbjct: 62  MNQSLKAYG-----HQVSILHGSAVDCFEAIQSRYHIKNLFSHQEIGLNCTFERDRELST 116

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--LVQADLRSLPVPAI 182
              +H +  + F    ++  GS     +   K +    +A I+        L +L    +
Sbjct: 117 WFTEHNIPWQEFAQGAVVR-GS--KDRVGWDKHWNSVMRAPIEESLFTAESLHTLDPEEL 173

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--Q 240
            L      + + +        ++ +   G   A   L  F   +   Y      P     
Sbjct: 174 ELAMEPPQAWLTK--------VNGIQTGGSALAWATLHDFFDRRGRDYYRSISSPEASRH 225

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             ++LSPYL+ G +S R+ +  L   +     +    A S  + L W   + H M  + S
Sbjct: 226 ACTRLSPYLAWGNISLREVYQHLLGHWQVAGFRRSLIALS--SRLHW---HCHFMQKFES 280

Query: 301 VC------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            C      +   +    +K E  KD   LQAWK G TG P++DA MR L+  G+++ R+R
Sbjct: 281 ECAMEYRCINHAYEALLQK-ETVKDPTHLQAWKIGMTGVPLVDACMRCLHHTGYINFRMR 339

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SFL   + +DWR G  +     LD +   +   +Q  A  G   +   RI+NPT Q
Sbjct: 340 SMLVSFLTHHMNMDWRDGVTHLAQMFLDFEPGIHYPQFQMQA--GVTGINTIRIYNPTKQ 397

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
            +  D  G FIR W+PEL+++PT  +  P
Sbjct: 398 AQEHDSDGDFIRKWVPELSDIPTPLLFEP 426


>gi|302422386|ref|XP_003009023.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102]
 gi|261352169|gb|EEY14597.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102]
          Length = 703

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 130/290 (44%), Gaps = 28/290 (9%)

Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
           PF   +    ++A L   PV  +    P  PSN      +P +        GE +AL  +
Sbjct: 226 PFEMPVTYEELEAALLK-PVEDVLDDAPEYPSNATSV--HPLKG-------GELDALQRV 275

Query: 220 RKFCKE-KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRL----------KEEF 267
               K   +  Y   R+ +  +  +++LS YL++G L+ RQ    +           +E 
Sbjct: 276 NHLIKSCSMSNYKNTRNGLLGVDFSTKLSGYLALGCLTARQVHEEMVKYEDGQGPQYKEI 335

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLM-AFYPSVCMGKPFIPWTEKIEWNKD-----SH 321
                    G  +   EL+WR++ R     F   +   + F    +  +W        + 
Sbjct: 336 DGFGNGENEGTKAVRFELLWRDYMRLCTRKFGHRLFRAEGFRDDRKPTQWKTAKQPEIAE 395

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           +L+ +  G TG   IDA+ R+L   G+  NR R   ASFL K L +DWR G E++   L+
Sbjct: 396 ILKRFLAGTTGMGFIDASQRELLHTGYTSNRARQNVASFLAKHLGIDWRYGAEWYECMLI 455

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           D D++SN   WQ+ A  GND     RIFNP  Q   +D QG +++ W+PE
Sbjct: 456 DYDVSSNWSNWQYVAGVGNDPRGEARIFNPVKQAFDYDKQGEYVKAWVPE 505


>gi|225076344|ref|ZP_03719543.1| hypothetical protein NEIFLAOT_01388 [Neisseria flavescens
           NRL30031/H210]
 gi|224952329|gb|EEG33538.1| hypothetical protein NEIFLAOT_01388 [Neisseria flavescens
           NRL30031/H210]
          Length = 428

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 191/451 (42%), Gaps = 51/451 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LR+ DN AL AA   S   +  V+++   Q      ++RQS F Y +  ++  
Sbjct: 24  LVWFRRNLRLHDNAALNAAV-ASGLPIACVWVS---QRPSENHNSRQSLFHYQAAQELHT 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I    +  ++ +D +    +      +T    +  Y   E+R+D  L       
Sbjct: 80  RLAAHHIPL--YVVASDEDLLPLAAALNAHTVIT----DEAYTEAEIRQDNHLWHNFDRA 133

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +  +D  +L    +++     Y  +  +++A +Q           +P        T
Sbjct: 134 GITLQHANDRGILAKSPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETELPV------QT 187

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             N+P F  +    +      GE  AL     F +  V+Y + Q   PA + TS L+ YL
Sbjct: 188 GQNVPLFPAHTGAVLPAYQQGGETAALTQWHAFKQNLVHYPITQ-TFPARKNTSLLNAYL 246

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           S G +SPR     L  E +       +  F WL +LI+R+ Y + +A++  +       P
Sbjct: 247 SAGCISPR----LLAAEGL------ANRHFEWLEKLIFRD-YCYQLAYHRRLPETTDAAP 295

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             E             W+ G TG PIIDA++R L   G +H  L+ + A +    L  D 
Sbjct: 296 VREY------------WRHGQTGVPIIDASIRGLEATGHLHPILQQLCAHYFCHALNFDP 343

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             G  +  S     D A N   W +AA     +V Y        +  + DP G++IR ++
Sbjct: 344 NQGIAWTASVQTGTDPALNQANWHFAAQ-DTATVRYAH------RSHQIDPDGSYIRSYV 396

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLN-YPLP 459
           PEL ++P+  IH P  W   +D+  + YP P
Sbjct: 397 PELAHLPSTLIHTP--WAAADDIDTHGYPFP 425


>gi|261047494|gb|ACX54506.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 162

 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 95/168 (56%), Gaps = 11/168 (6%)

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           N   EE V+L +K           +  RE+ R++   +P     +P +   +   W  D 
Sbjct: 6   NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
           +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   L
Sbjct: 55  NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           LD DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R W
Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRW 162


>gi|116256289|gb|ABJ90474.1| cryptochrome 1 [Equus caballus]
          Length = 378

 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 107/230 (46%), Gaps = 16/230 (6%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPYL  G LS R  +
Sbjct: 156 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPAGLSPYLRFGCLSCRLFY 213

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318
            RL + +  +  K  S   S   +L+WREF+       P      G P      +I W+K
Sbjct: 214 FRLTDLYRKV-KKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDK 269

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F 
Sbjct: 270 NPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 329

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
             LLD D + N G W W  S  +    +F  + P   G+R DP G +IR 
Sbjct: 330 ELLLDADWSINAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRR 378


>gi|322709598|gb|EFZ01174.1| Putative cryptochrome DASH [Metarhizium anisopliae ARSEF 23]
          Length = 695

 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 115/258 (44%), Gaps = 30/258 (11%)

Query: 208 FPIGEQNALHILRKFCKEKVY--YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK- 264
           F  GE +    LR   K      Y   +  +  +  + +LS YLS+G L+ RQ    L  
Sbjct: 263 FTGGETSGWARLRHLGKSSAMTSYKDTRNGLVGVDYSLKLSGYLSLGCLTARQIHEELLK 322

Query: 265 -EEFVDLLIKPKSGAFSWLN--------ELIWREFYR-----------HLMAFYPSVCMG 304
            E+  D   K   G     N        EL+WR++ R            L  F       
Sbjct: 323 LEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRLCTAKFGRKLFRLSGFRQDSSYD 382

Query: 305 KPFIPWTEKI---EWNKD----SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           K +    E+    E   D    S +L+ ++ G TG  +IDA+ R+L   G+  NR R   
Sbjct: 383 KKWKTADEEKAGPEQEPDPAQISKILERFQNGTTGMGLIDASQRELFHTGYTSNRARQNA 442

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASF  K L +DWR G E++   L+D D++SN   WQ+ A  GND     R FNP  Q   
Sbjct: 443 ASFFSKHLEIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGIGNDPRGDARTFNPVKQAFD 502

Query: 418 FDPQGTFIRHWLPELNNV 435
           +D +G ++R W+PEL  +
Sbjct: 503 YDKEGIYVRMWVPELQGL 520


>gi|71009567|ref|XP_758291.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
 gi|46098033|gb|EAK83266.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
          Length = 684

 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 130/295 (44%), Gaps = 45/295 (15%)

Query: 211 GEQNALHILRKFCKEKVYY--YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLK 264
           GE  AL  L   CK+  Y   + + +  P        T+ LSPYL  G LS R+ W   +
Sbjct: 270 GEPIALEKLANICKDAKYVATFAKPKTSPGQSAEDPSTTLLSPYLKFGCLSVRKLWWDAE 329

Query: 265 EEFVDLLIKPKSGAFSWLN-ELIWREFYRHLMAFYP-----------SVCMGKPFIPWTE 312
           E         K+G    LN +L++R+ Y    A Y             VC    ++ W  
Sbjct: 330 EAKNRYKGGSKTGPPENLNGQLLFRDMY--ACAEYAIGDAFGRVRGNEVCR---YMDWYL 384

Query: 313 KIEWNKDSHL--------------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
              ++++  +              L A+K G TGFP IDA MRQL   GWMH+  R   A
Sbjct: 385 PTHYDENGEVVLPRPAGDAVSEARLSAYKLGQTGFPWIDALMRQLRLEGWMHHLGRHSVA 444

Query: 359 SFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           +FL +    + W  G E F   L+D D  SN G W W + +      YFR++       +
Sbjct: 445 AFLTRGQCWISWERGAEIFDEYLIDWDPCSNPGNWMWLSCSAF-FTQYFRLYGLATFPAK 503

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHKKA 466
           +D  G  +R + PEL   P +YI+    AP     K    +  +YPLP++D K+A
Sbjct: 504 YDKTGALVRKYCPELAKFPDKYIYEPFNAPKEVQQKAGCIIGKDYPLPMLDEKEA 558



 Score = 37.0 bits (84), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 11/178 (6%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS H   L W R DLR+ D+ AL AA     A +  V+   P    +H +   +  F+  
Sbjct: 1   MSKHVRVLYWFRTDLRLHDSPALQAALDLKPAALFPVWCWDPNYVYKHRVGVNRFRFLLE 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL- 122
           S++ + K+++      Q        +  E L     +  +T L + +       RRD+L 
Sbjct: 61  SMIALSKNITSTQSNSQLLVVRG--EPTELLPELWKRWSITHLVFEKDPSAYGRRRDQLI 118

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           LE   +  V   +     L  P  ++N      K       + +Q +V AD+  +P P
Sbjct: 119 LEAAEKSNVKVVAVQGHHLYDPEQVVNKN----KGKPTMSMSTLQKIV-ADMGDVPKP 171


>gi|329133696|gb|AEB78729.1| DNA photolyase [Acinetobacter sp. Ver7]
          Length = 62

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 54/62 (87%)

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RMI A FL K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIF
Sbjct: 1   HNRVRMIVAIFLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIF 60

Query: 410 NP 411
           NP
Sbjct: 61  NP 62


>gi|241759630|ref|ZP_04757731.1| deoxyribodopyrimidine photolyase [Neisseria flavescens SK114]
 gi|241320002|gb|EER56383.1| deoxyribodopyrimidine photolyase [Neisseria flavescens SK114]
          Length = 411

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 192/451 (42%), Gaps = 51/451 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LR+ DN AL AA   S   +  V+++   Q      + RQS F Y +  ++  
Sbjct: 7   LVWFRRNLRLHDNAALNAAV-ASGLPIACVWVS---QRPSENHNPRQSLFHYQAAQELHT 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I    +  ++ +D +    ++     +T    +  Y   E+R+D  L       
Sbjct: 63  RLATHHIPL--YVVASDEDLLPLAAAFNAHTVIT----DEAYTEAEIRQDNHLWHNFDRA 116

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +  +D  +L    +++     Y  +  +++A +Q           +P        T
Sbjct: 117 GITLQHANDRGILAKFPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETELPV------QT 170

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             N+P F  +    +      GE  AL     F +  V+Y + Q + PA + TS L+ YL
Sbjct: 171 RQNVPLFPAHTGAVLPAYQQGGETAALTQWHAFKQNLVHYPITQ-NFPARKNTSLLNAYL 229

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           S G +SPR     L  E +       +  F WL++LI+R+ Y + +A++  +       P
Sbjct: 230 SAGCISPR----LLAAEGL------ANRHFEWLDKLIFRD-YCYQLAYHRRLPETTDAAP 278

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             E             W+ G TG PIIDA++R L   G +H  L+ + A +    L  D 
Sbjct: 279 VREY------------WRLGQTGVPIIDASIRGLEATGHLHPVLQQLCAHYFCHALNFDP 326

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             G  +  S     D A N   W  AA     +V Y        +  + DP G++IR ++
Sbjct: 327 NQGIAWAASVQTGTDPALNQANWHLAAQ-DTATVRYAH------RSHQIDPDGSYIRSYV 379

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLN-YPLP 459
           PEL ++P+  IH P  W   +D+  + YP P
Sbjct: 380 PELAHLPSTLIHTP--WAAADDIDTHGYPFP 408


>gi|86134108|ref|ZP_01052690.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
           photolyase subfamily [Polaribacter sp. MED152]
 gi|85820971|gb|EAQ42118.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
           photolyase subfamily [Polaribacter sp. MED152]
          Length = 496

 Score =  107 bits (266), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 132/270 (48%), Gaps = 22/270 (8%)

Query: 222 FCKEKVYYYVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNR---LKEEFVDLLIKPKS 276
           F +E+   Y+     PA+  +  S+LSPY++ G LS RQ + +   LK +      K + 
Sbjct: 210 FFEERYKNYMNHISKPALSRKSCSRLSPYIAWGNLSIRQVYQKAIMLKND----ENKRQL 265

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFI-PWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           GAF  ++ L W+  +  +  F     M +  I     K++ N  +   +AW++G TGFPI
Sbjct: 266 GAF--VSRLRWQAHF--IQKFEMEHTMEEASINKGYHKLKKNISTKYQKAWREGKTGFPI 321

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           IDA+MR L+  G+++ R+R + ASF    L   W+    +     LD +   +    Q  
Sbjct: 322 IDASMRCLSETGYLNFRMRSMLASFFTHILWQPWQDSSHHLSQLFLDFEPGIHFP--QLN 379

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKN--- 450
             +G   +   R++NP       D    FI+ W+PEL N+PT +IH P+  + LD+    
Sbjct: 380 MQSGETGINEIRVYNPIKNSLEHDEDANFIKEWVPELANLPTAFIHQPYLMTPLDEQFNN 439

Query: 451 -DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
             L ++YP PIVD K A        +  KK
Sbjct: 440 FKLGVDYPKPIVDFKSARKRATQTLWDMKK 469


>gi|254480682|ref|ZP_05093929.1| FAD binding domain of DNA photolyase protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039265|gb|EEB79925.1| FAD binding domain of DNA photolyase protein [marine gamma
           proteobacterium HTCC2148]
          Length = 495

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 199/474 (41%), Gaps = 46/474 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +VWL+ DLR+ D++ L  A  +S   V   +   P        S R   F+  SL 
Sbjct: 1   MSVSVVWLKRDLRLNDHQPLLRAL-SSGLPVFIFYCFEPMLLNDPRYSERHWRFVSQSLQ 59

Query: 67  QVQKSLSQ---KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKL 122
            + + L Q   + +VFQ        D++        +  ++ ++ + +  ++    RD+ 
Sbjct: 60  DMNRQLRQNRFRVLVFQ-------SDALPLFKLIHAESPISAVYSHEETGVDSTFGRDRS 112

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +   L +  I      +  +  G          + ++   K      V   + + P  A 
Sbjct: 113 IASWLNNEGIAWHESPTNGVQRGRTDRKGWN--RRWSEVMKMPQDQPVWDAVCAPPPLAG 170

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240
              G     + P  +  P Q +      GE  A  +L  F  E+  +Y      P  +  
Sbjct: 171 GALGEALLRSPPEQWLRPVQDLQQG---GETAATQVLDSFLTERGAHYERHISKPDKSQL 227

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYP 299
             S+LSP+L+ G +S RQ    L+        +P +G    +N    R  ++ H +  + 
Sbjct: 228 HCSRLSPHLAWGNISIRQVSQALEAR------RPYAGWERSMNAFESRLHWHCHFIQKFE 281

Query: 300 SVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
             C     + W +       +E + D     AW++G TG+P+IDAAMR L   G+++ R 
Sbjct: 282 MECS----MEWRDLNRGYLDVERSYDPAAQLAWREGRTGYPLIDAAMRCLQATGYVNFRC 337

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPT 412
           R +  SF    L   W     +  S  LD +   +    Q  A  TG ++V   RI+NP 
Sbjct: 338 RAMLVSFFCHLLWQPWHDAAVHLASLFLDFEPGIHYPQLQMQAGVTGINTV---RIYNPI 394

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLNYPLPIVD 462
            Q    DP+G FIR W+PEL  +P   IH P  W    +++  LS +YP PI+D
Sbjct: 395 KQAIDHDPKGHFIRQWVPELRTMPEHLIHQP--WNANPMERMLLSCDYPEPIID 446


>gi|307105812|gb|EFN54060.1| hypothetical protein CHLNCDRAFT_136148 [Chlorella variabilis]
          Length = 661

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 118/271 (43%), Gaps = 58/271 (21%)

Query: 212 EQNALHILRKFCKEK-VYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
           E++  H +R   +E  +  Y E R  P  +  +++LS +LS+G LSPR        E   
Sbjct: 322 EESDGHSVRSVDQEAPIATYRETRMQPFGVDSSAKLSAFLSLGCLSPRT----AHAEVAR 377

Query: 270 LLI---------------------------------------KPKSG-AFSWL-NELIWR 288
           L +                                       +P++G  + WL   L  R
Sbjct: 378 LAVLEQQQQQQQRRRRGQASSGDAAATAAVAAAAGEAAAAWREPQAGDTWRWLLMHLAIR 437

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +F+    A      +  P       +EW +D  L + W QG TG P +DA MR+L   G+
Sbjct: 438 DFFV-FTAVKEGDALEAPGGIRGRAVEWRRDDELFRRWAQGQTGLPFVDACMRELGATGF 496

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R         +L +DWR+G  YF S L D + A N G W + A TG+D  P  R 
Sbjct: 497 MSNRGRQ-------NELCLDWRLGLRYFESCLADHEWALNAGNWAYCAGTGSD--PRDRR 547

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNV-PTQ 438
           F    QG+R+DP+   I+ W+P+L  + P Q
Sbjct: 548 FKTVSQGERYDPEARLIQAWVPQLAALRPAQ 578


>gi|224004440|ref|XP_002295871.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209585903|gb|ACI64588.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 571

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 106/219 (48%), Gaps = 24/219 (10%)

Query: 233 QRDIPAIQGT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWL-NELIWR 288
           +R++  + G+  S+LS  L++G LSPRQ +  +K E   L     S    +W+ N L  R
Sbjct: 317 ERNLCDVSGSHSSKLSVPLALGTLSPRQIYRYVKSEQEQLGNTTTSPDGIAWIINHLEIR 376

Query: 289 EFYRHLMAFYPSVCMGKPFI------PWTEK----IEW---NKDSHLLQAWKQGYTGFPI 335
           +++      + S   GK         P   K     EW   +        W  G T  P+
Sbjct: 377 DYF-----LFESFLNGKAAYNLQGRRPTAHKPNVQREWLSLHDGQDAFTRWTSGKTNLPL 431

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DA M +L   G++ NR+R    S L KDL +DWR+G E+F   L D D+A+N G WQ+ 
Sbjct: 432 VDAGMNELIATGYISNRIRQNIVSVLTKDLTIDWRLGAEWFQLALEDHDVAANYGNWQYF 491

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
           A  G D  P  R F    Q  R+D +G F+R W+  L +
Sbjct: 492 AGVGGD--PKNRHFRTVSQAWRYDARGVFVRKWIDRLKD 528


>gi|31321921|gb|AAM50087.1| cryptochrome 4 [Gallus gallus]
          Length = 140

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 73/129 (56%), Gaps = 2/129 (1%)

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEE 374
           W +D+  L  WK   TGFP IDA M QL   GW+H+  R   A FL + DL + W  G +
Sbjct: 2   WYEDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGMK 61

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
            F   LLD D + N G W W +++      Y RIF P   G+R DP+G +IR +LP L N
Sbjct: 62  VFEELLLDADYSINAGNWMWLSASAFFH-HYTRIFCPVRFGRRTDPEGQYIRKYLPILKN 120

Query: 435 VPTQYIHAP 443
            P++YI+ P
Sbjct: 121 FPSKYIYEP 129


>gi|260220872|emb|CBA28873.1| hypothetical protein Csp_A09310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 468

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 186/449 (41%), Gaps = 39/449 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI----ATPEQWRQHGISARQSHFIYASLL 66
           + W R+D+R+ DN A   AC      +   F     A    W   G+S  +  +  A++ 
Sbjct: 24  IYWFRSDMRLQDNPAWTRACAMGRPVLAVTFAPVLSAREAAWGIPGLSPSRKAWWAATVQ 83

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF---YNRQYEINEVRRDKLL 123
           ++++ L   G+     +  + +  +   ++      V +     Y R  +++ +R   ++
Sbjct: 84  ELRRELDALGVSLLVLRGGSMEALVRLFEASGAVALVCEEIAAPYERA-QLSSLRASGIV 142

Query: 124 EKRLQHRVICKSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPV 179
              +    + K+ D   SV   PG       ++ +   PFR  L    N+   DL    V
Sbjct: 143 VHSVWQGTLFKAEDLPFSVTDLPGVFTRFRNEVERAKVPFRTPLPAPVNVTGYDLACDAV 202

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA----------------IDPMFPIGEQNALHILRKFC 223
                   V  +   +F   P  A                +D +         ++     
Sbjct: 203 SFAEDF--VDGAAAGKFVADPRSAFQWRSGSSGANDEVLHLDEVLAGSGGGHAYLQHYLE 260

Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
             +V  Y   R+ +  +  +S+ SP+L++G +S  +    LK    +       G++   
Sbjct: 261 SGRVAQYKATRNGLTGMAYSSKWSPWLALGAVSAPELMAALKAH--EREHGTTDGSYWLW 318

Query: 283 NELIWREFYRHLMAFYPSVCM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
            EL+WR+++R L   Y +      G      +E++  ++ S  L  W QG TG  ++DA 
Sbjct: 319 FELLWRDYFRWLHLQYGAGLYRPKGLLEAAKSERVPHHRRSFTL--WTQGRTGCDLVDAG 376

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR+L   G++ NR+R + ASFL+ +L  DWR G  +F SQLLD D+ SN G W + A  G
Sbjct: 377 MRELACSGYLSNRMRQVVASFLIYELGCDWRAGAAWFESQLLDFDVYSNQGNWLYIAGLG 436

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
            D     R FN   Q    DP G +   W
Sbjct: 437 TDPRG-GRRFNVAKQTADHDPDGAYRALW 464


>gi|241701053|ref|XP_002411902.1| DNA photolyase, putative [Ixodes scapularis]
 gi|215504842|gb|EEC14336.1| DNA photolyase, putative [Ixodes scapularis]
          Length = 253

 Score =  105 bits (262), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 19/231 (8%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPAIQGTSQ--LSPYLSIGVLSPRQCW 260
           D ++P GE  AL  L +  + K +   +   +  P     SQ  LSPYL  G LS R  +
Sbjct: 23  DAVWPGGETEALARLERHLERKAWVASFGSPKMTPKSLLASQTGLSPYLRFGCLSARLFY 82

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI-----PWTEKIE 315
           ++L + +    IK  +   S   +L+WREF      FY +      F      P   +I 
Sbjct: 83  HQLADLYRK--IKKSNPPLSLQGQLLWREF------FYCAATRNPNFDRMHNNPICVQIP 134

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEE 374
           W+ ++  L  W  G TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G +
Sbjct: 135 WDVNAEALAKWANGQTGYPWIDAIMRQLREEGWIHHVARYAVACFLTRGDLWLSWEEGMK 194

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            F   LLD D + N G W W  S  +    +F ++ P   G++ DP G FI
Sbjct: 195 VFDELLLDADWSVNAGSWMW-LSCSSFFQQFFHLYCPVRFGRKADPSGDFI 244


>gi|332211183|ref|XP_003254698.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2-like [Nomascus
           leucogenys]
          Length = 543

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 110/243 (45%), Gaps = 23/243 (9%)

Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249
             +P + + P ++  GE  AL  L K  + K +  V   + P +   S       LSPYL
Sbjct: 240 LGFPTEGLGPAVWQGGETEALARLDKHLERKAW--VANYERPRMSANSLLASPTGLSPYL 297

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSV--CMG 304
             G LS R  + RL     DL  K K  +    S   +L+WREF+       P      G
Sbjct: 298 RFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEG 353

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK- 363
            P      +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + 
Sbjct: 354 NPIC---IQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 410

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL V W  G   F   LLD D + N G W W + +      +F  + P   G+R DP G 
Sbjct: 411 DLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGD 469

Query: 424 FIR 426
           +IR
Sbjct: 470 YIR 472


>gi|149198712|ref|ZP_01875755.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155]
 gi|149138148|gb|EDM26558.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155]
          Length = 481

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 128/270 (47%), Gaps = 25/270 (9%)

Query: 211 GEQNALHILRKFCKE--KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           GE  A   L  F  +  K Y+    +   + +   +LSPYL+ G +S RQ +  +KE   
Sbjct: 193 GEDTAHRYLTSFLADRGKDYHRFISKPSKSRKSCGRLSPYLAWGNISSRQVYQFIKE--- 249

Query: 269 DLLIKPKSGAFS-WLNELIWREFY---RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
               K    A+S  L  + WR  +     +   Y  + + K +    E +  N ++  ++
Sbjct: 250 SPKYKDNKRAYSGLLTRIKWRSHFIQKFEVECSYEYLYLNKGY----ELLSLNFNAEHIR 305

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           AW++G TG+P++DA MR L+  GW++ R+R +  SF    L  DWR G  +     LD +
Sbjct: 306 AWEKGKTGYPLVDACMRCLHATGWINFRMRAMLTSFFCHHLAQDWRDGVYHLAKLFLDYE 365

Query: 385 LASNNGGWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
              +   +Q  A +TG ++V   RI+NP  Q    DP G FIR W+PEL  +    IH P
Sbjct: 366 PGIHFPQFQMQAGTTGINTV---RIYNPIKQSMDNDPHGEFIRQWVPELKELNNNEIHEP 422

Query: 444 -------HSWLDKNDLSLNYPLPIVDHKKA 466
                         +L L YP PI+D K+ 
Sbjct: 423 WKIELMEAKMKGYANLHL-YPDPIIDIKET 451



 Score = 40.4 bits (93), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 8  SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++VWL+ DLR+ D+  L AA   S    + ++   P       +S    +FIY SLL+
Sbjct: 3  EINVVWLKRDLRLNDHACL-AAAEASKLPYLIIYCFEPRLINAPDVSENHLNFIYLSLLE 61

Query: 68 VQKSLS 73
          +QK L 
Sbjct: 62 MQKKLE 67


>gi|311695859|gb|ADP98732.1| deoxyribodipyrimidine photo-lyase [marine bacterium HP15]
          Length = 538

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 129/285 (45%), Gaps = 21/285 (7%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKE--E 266
           G      +L  F   +   Y      P  A++  S+LSP+++ G +S R+ +   K    
Sbjct: 218 GSARGEKLLESFLDRRCVGYQYNISSPNTAVRACSRLSPHIAYGTVSLREIYQEAKATGN 277

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK----DSHL 322
             + L + K    S+ + L W   +   +   P +     F     ++E  K    DS  
Sbjct: 278 HRNTLPRKKKSLTSFRSRLHWHCHFIQKLEDEPEL----EFRAMHREMEALKTGPNDSER 333

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           LQ W++G TG+P++DA+MR L   GW++ R+R +  +     L + WR    +      D
Sbjct: 334 LQRWQEGQTGWPLVDASMRALAHSGWINFRMRAMLMAIASYQLWLHWRDPALHLARLFTD 393

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            +   +    Q    +G   +   RI+NP +Q ++ DP+G FIR W+PEL  VP++ IH 
Sbjct: 394 FEPGIHYS--QTQMQSGLTGINALRIYNPVLQSQKLDPEGEFIRRWIPELAGVPSEMIHT 451

Query: 443 PHSWL----DKNDLSLN-YPLPIVDHKKACHHTLNQYYAAKKQSL 482
           P  WL     K     N Y  P+ DH++A           +KQS+
Sbjct: 452 P--WLMTPAQKERYGGNTYIAPVCDHEQAARVARKAVGDFRKQSV 494


>gi|160335014|gb|ABX24915.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335192|gb|ABX25004.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 161

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 11/166 (6%)

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           N   EE V+L +K           +  RE+ R++   +P     +P +   +   W  D 
Sbjct: 6   NEAGEESVNLFLK----------SIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDE 54

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
           +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   L
Sbjct: 55  NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTL 114

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           LD DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R
Sbjct: 115 LDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 160


>gi|223997602|ref|XP_002288474.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975582|gb|EED93910.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 408

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 127/287 (44%), Gaps = 24/287 (8%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS--QLSPYLSIGVLSPRQ---CWNRLKE 265
           GE  A  +L  F   +   Y      P    TS  +LSPYL+ G +S R       R +E
Sbjct: 111 GETKAFGMLHSFLTHRGANYSAGISSPNTSWTSCSRLSPYLTWGHISLRYVIVTTQRKQE 170

Query: 266 EFVDLLIKPKSGAFS---WLNELI-------WREFYRHLMAFYPSVCMGKPFIPWT--EK 313
           E  +   + KS   +   WL  L        WR  +   +   PS+ +    + ++   +
Sbjct: 171 ELREHRKRNKSRGEAPSLWLRSLASFQSRMHWRSHFIQKLESQPSLEVQDQCLAFSHLRR 230

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
              + +    ++W +G TG+P +DA MR L   GW++ R R +  SF   +L +DW+   
Sbjct: 231 QPGDFNESYYESWCEGKTGYPYVDACMRCLRHCGWINFRARAMLVSFATYNLWLDWKRIA 290

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
            Y     LD +   +    Q    +G   +   R++N T QGK  DP G FIR  +PEL 
Sbjct: 291 SYLARLFLDYEPGIHYP--QLQMQSGVTGINAMRVYNVTKQGKDQDPNGVFIRKHVPELR 348

Query: 434 NVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           NVP +YIH P          + YP PIVD K A     ++    +KQ
Sbjct: 349 NVPVEYIHEPFGM-----PCVYYPAPIVDEKAAAKAAKDKLSGVRKQ 390


>gi|91217399|ref|ZP_01254359.1| putative deoxyribodipyrimidine photolyase [Psychroflexus torquis
           ATCC 700755]
 gi|91184507|gb|EAS70890.1| putative deoxyribodipyrimidine photolyase [Psychroflexus torquis
           ATCC 700755]
          Length = 485

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 203/493 (41%), Gaps = 70/493 (14%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++VW + DLR+ D+  L+ A       V+ ++I  P   +    S R   FI  SL  +
Sbjct: 2   VNVVWFKRDLRLQDHAPLHLALQKKQP-VLLLYIFEPILLKDSHYSERHFRFIKESLRDI 60

Query: 69  QKSLSQKGIVFQYH-QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--RRDKLLEK 125
           QK L        YH Q    + + E +     QQ   K  ++ Q    ++  +RDK L+ 
Sbjct: 61  QKQLEA------YHTQVLIVEGNAEDVFKTIHQQLTIKSVFSHQETGLQITFKRDKNLKL 114

Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR- 183
             +   I  K F ++ ++         LQ  K +      L +N +  DL        + 
Sbjct: 115 LFKSLSIQWKEFVNNGVI-------RGLQNRKTWI----NLWENFMSQDLLYFSASLGQF 163

Query: 184 --------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                   L G ++P ++    +  FQ        G   AL  L+ F +++   Y +   
Sbjct: 164 ENQNQIDSLKGQLSPVDLSTERNLNFQKG------GRPTALRYLKGFLQDRYPNYQKNIS 217

Query: 236 IP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR----- 288
            P  A +  S+LSPY++ GVLS R+      E  +    K K     + + L W+     
Sbjct: 218 KPLLARKSCSRLSPYIAWGVLSMREVIQASIE--IQDKTKHKQALSQFQSRLRWQAHFIQ 275

Query: 289 ----EFYRHLMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
               E++     F  +   + KP+           +  L +AWK+G TGFP++DA+M+ L
Sbjct: 276 KFEMEYHAEFQNFNSAFNVLEKPY-----------NKALAEAWKKGETGFPLVDASMKCL 324

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              G+++ R+R +  SF    L   W+    +  S  LD +   +    Q  A  G   +
Sbjct: 325 IQTGYLNFRMRALLVSFFTHLLWQTWQEASSHLASLFLDFEPGIHYPQLQMQA--GTTGI 382

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYP 457
              RI+NP     + D  G FI  +LP L  +P +++H P         +   +L  +YP
Sbjct: 383 HTLRIYNPVKNSYKHDLDGEFILTYLPSLKGIPLEFVHEPWKLTAMEQSMYNFELGKDYP 442

Query: 458 LPIVDHKKACHHT 470
            PI++      H 
Sbjct: 443 RPIIEMATTRQHA 455


>gi|169617021|ref|XP_001801925.1| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
 gi|160703316|gb|EAT80731.2| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
          Length = 1229

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 113/248 (45%), Gaps = 35/248 (14%)

Query: 240  QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY---RHLMA 296
            Q T+ LSP+L  G LS R+ + R+++       K      S   +L++R+ Y   +  + 
Sbjct: 841  QSTTLLSPHLHFGSLSVREFYWRVQDIVTSFKGKASQPPASLTGQLLFRDMYFGAQAALG 900

Query: 297  FYPSVCMGKP---FIPWTEKIEWNKDSHLL---------------QAWKQGYTGFPIIDA 338
            +        P   FIPW      +  ++L+               Q WK G TGFP IDA
Sbjct: 901  YSFGQTYNNPACRFIPWHLPSAIDPATNLITGKYLVDSALAESHFQRWKHGRTGFPWIDA 960

Query: 339  AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
             MRQL   GW+H+  R   A FL +    +DW  G E F   L+D + A N G WQW + 
Sbjct: 961  LMRQLAREGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEFLIDHESACNIGNWQWLSC 1020

Query: 398  TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457
            T      +FR ++P     ++D  G F+R ++PEL +   ++I+ P            + 
Sbjct: 1021 TAF-FAQFFRCYSPVAFPAKWDKNGDFVRRYVPELAHFDKKFIYEP------------WK 1067

Query: 458  LPIVDHKK 465
             PI D KK
Sbjct: 1068 APIADQKK 1075


>gi|79313247|ref|NP_001030703.1| UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase [Arabidopsis
           thaliana]
 gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana]
          Length = 445

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 184/441 (41%), Gaps = 69/441 (15%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + +    S  L+W R  LR+ DN AL  A   S+  +  VF+  P             H+
Sbjct: 17  ITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEF-MYPVFVIDP-------------HY 62

Query: 61  IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSY--------------CLQQ-R 102
           + +         S+ G   I F      + D S++ L S               CLQ+ +
Sbjct: 63  MESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWK 122

Query: 103 VTKLFYNRQYEIN---EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN-HALQMYKVY 158
           V +L +  +Y+ +   +    K+ +      V   S     L  P  I+  +  +    Y
Sbjct: 123 VKRLCF--EYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSY 180

Query: 159 TPFRKALIQ-NLVQADL--RSLPVPAIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIG 211
             F K   + +  +++L      +P I   G +  S +P   +  +    QA    F  G
Sbjct: 181 QSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGG 240

Query: 212 EQNALHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           E  AL  L K   +K +   + + +  P+      T+ +SPYL  G LS R  +  L+  
Sbjct: 241 ESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNI 300

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS--------VCMGKPFIPWTEKIEWNK 318
           + D+  K  S   S L +L+WREF+       P+        +C         ++I WN+
Sbjct: 301 YKDVK-KHTSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNRIC---------KQIPWNE 350

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           D  +L AW+ G TG+P IDA M QL   GWMH+  R   A FL + DL + W  G + F 
Sbjct: 351 DHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFE 410

Query: 378 SQLLDGDLASNNGGWQWAAST 398
             L+D D A NNG W W + +
Sbjct: 411 RLLIDSDWAINNGNWMWLSCS 431


>gi|332141438|ref|YP_004427176.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551460|gb|AEA98178.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 273

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 7/225 (3%)

Query: 208 FPIGEQNALHILRKFC---KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           F  GE  AL+ L  +    K    Y   +  +   + +++LS +L+ G LS R+   R  
Sbjct: 53  FIGGESAALNHLETYLFDWKAAATYKETRNTLDTWKDSTKLSAWLANGSLSAREV-IRQV 111

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
           + F   + K  S  + +  EL+WREF+  L   Y +       I    K     D     
Sbjct: 112 QRFEQTIEKNDSTYWVYF-ELLWREFFHWLQCKYGAKWFRFSGIQ-GRKPTTCHDPETFS 169

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            W +G TG+ I+DA MRQL   G+M NR R + AS  V +L  DWR G  +F  QL+D D
Sbjct: 170 RWCKGETGYRIVDACMRQLAETGYMSNRGRQLVASCFVHELRQDWRYGAAWFEHQLIDYD 229

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + SN G W + A  G+D   + R FN   Q + +DP G F + WL
Sbjct: 230 VGSNWGNWLYLAGVGSDPRGH-RQFNLQKQTEIYDPDGRFRKAWL 273


>gi|302745164|gb|ADL62685.1| cryptochrome 5 [Phreatichthys andruzzii]
          Length = 411

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 180/419 (42%), Gaps = 47/419 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+H  W R  LR+ DN AL AA  +    +  +F+  P       I   +  F+  +L  
Sbjct: 5   SIH--WFRKGLRLHDNPALLAALKDC-RHIYPLFLLDPWYPNNTHIGINRWRFLIEALKD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-- 125
           +  SL  K +  +    S      E L     + ++T+L +    E     RDK + K  
Sbjct: 62  LDSSL--KKLNSRLFVVSG--PPAEVLPKLFEKWKITRLTFEVDTEPYSQSRDKEVMKLA 117

Query: 126 ---------RLQHRV--ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
                    ++ H +  I +  +++   PP + +     +  + +P  K  +    + D+
Sbjct: 118 EENGVEVIPKISHTLYNIDRIIEENNGKPPMTYVRFLSVVNAIGSP--KKPVPAPTKEDM 175

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDP-MFPIGEQNALHILRKFCKEKVYY-- 229
           + +  P            IP   D      ++ P +FP GEQ AL  L +  +   +   
Sbjct: 176 KGVSTPFFE--DHEEEFRIPTLEDLGLDTSSLGPNLFPGGEQEALRRLDEHMERTTWVCK 233

Query: 230 YVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
           + + +  P   I  T+ LSPY+  G LS R  W RL + +     +      S   +L+W
Sbjct: 234 FEKPQTSPNSIIPSTTVLSPYIRFGCLSARTFWWRLADVYRGK--QHSEPPVSLHGQLLW 291

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           REF      FY +  +G P     E      +++W+ +   L AW++  TGFP IDA M 
Sbjct: 292 REF------FY-TTAVGIPNFNRMEGNRHCVQVDWDNNPEHLAAWREARTGFPFIDAIMT 344

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           QL   GW+H+  R   A FL + DL + W  G++ F   LLD D + N G WQW +++ 
Sbjct: 345 QLCQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSASA 403


>gi|255533599|ref|YP_003093971.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
 gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
          Length = 430

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 180/415 (43%), Gaps = 40/415 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65
           LVW RNDLR+ DN+ L  A   SD+ ++ V+   P  +        ++      F+  S+
Sbjct: 7   LVWFRNDLRLHDNEMLVEAIAKSDS-ILPVYFFDPRYFENTRFGTAKTGIVRASFLLESI 65

Query: 66  LQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           L ++K+  + G   ++ Q        D +E  D       + +++++R+    E      
Sbjct: 66  LSLRKAFQRFGGDILLVQGKPEDMIRDLVEQFD-------IAEVYHHREVGPEETEISGH 118

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +E  L   ++  K F    L     +      +  V+  F+K   ++ +       P   
Sbjct: 119 VEDLLWTLKINLKHFIGHTLYNKEDLPFPIKDIPDVFAQFKKKTERDAIVKACFLTP-EH 177

Query: 182 IRLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQ--R 234
           I          +P   D  F+      I+     GE + L  L +  +     Y++Q  +
Sbjct: 178 IDFVENADWGQLPSLKDLGFETVAGAMIEKYATGGEDSGLQHLAQLLEAGADIYLKQNTK 237

Query: 235 DIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYR 292
             P   G +S+LS +L+IG LSPR  + ++KE E V  L    S  F     L+WR+++R
Sbjct: 238 HTPEKPGFSSRLSAWLTIGCLSPRMVYWKVKEAEGVFGLNANFSQIFL---GLLWRDYFR 294

Query: 293 -----HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
                H +AF     + K  +   E+++       L+ WK G T  P++D  M  LN  G
Sbjct: 295 FMFKKHGIAFLQETDLEKDIMQAIERVD-----PALEKWKTGCTAHPVVDKYMYDLNATG 349

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           ++ +  R++ A++LV  L + W  G  YF  +L+D   ASN G W   A  G D+
Sbjct: 350 FIPHSGRLLVATYLVHVLKIHWTCGAAYFEEKLIDYAPASNWGNWASVAGIGKDA 404


>gi|225010805|ref|ZP_03701273.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-3C]
 gi|225005013|gb|EEG42967.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-3C]
          Length = 491

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 131/291 (45%), Gaps = 33/291 (11%)

Query: 211 GEQNALHILRKFCKEKVYYYVE--QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           G  N    L  F  +++  Y +   + + +   + ++SPYL+ G+LS +Q    +     
Sbjct: 194 GSLNGWKYLHSFMTKRISGYQKYYSKPLESRLHSGRISPYLAWGMLSAKQVLQYVTRH-- 251

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV----------CMGKPFIPWTEKIEWNK 318
              +  K    S+L+ L W+  +       PS+           + K  IP         
Sbjct: 252 QKQVSNKRNINSFLSRLSWQAHFIQKFEMEPSIEFDAVNKGYAALNKTVIP--------- 302

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
            +H L AW+QG TG P++DAAMR L   G+++ RLR + ASF    L   W+    +   
Sbjct: 303 -AHQL-AWRQGQTGVPMVDAAMRCLVQTGFVNFRLRAMLASFFTHLLWQPWQDCSPHLAQ 360

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
             LD +   +    Q  A  G   +   RI+NP   G   DP+G FI+ W+PEL  +P  
Sbjct: 361 HFLDFEPGIHFPQLQMQA--GETGINTIRIYNPVKNGLDHDPKGIFIKKWVPELALIPEV 418

Query: 439 YIHAP------HSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
           Y+H P       +      L  +YP PI+D +K+  +  +Q +  +K +L+
Sbjct: 419 YVHEPWKMPPLEAAFLNFTLGNDYPAPIIDLEKSRKYAADQLWGLRKTNLV 469


>gi|229529536|ref|ZP_04418926.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae 12129(1)]
 gi|229333310|gb|EEN98796.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae 12129(1)]
          Length = 485

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 194/466 (41%), Gaps = 42/466 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  +
Sbjct: 4   INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + L+Q KG V           + +W    C  +   +      Y   EV      ++ L
Sbjct: 63  NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181
                C+  D      P + +    Q  K +    + +++      +L +A+   L   A
Sbjct: 113 ALAQWCQQHDIVWHQLPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAA 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
           + L      S+IP  +         M   G   A   L  F   +   Y      P++  
Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
              S++SPYL+ G +S R+ +  L + +     +    A S    W    I +      M
Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F    C+ + +    ++   +  +  L AW+ G+TG P++DA MR L   G+++ R+R 
Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPTIQ 414
           +  S L   + VDWR G  Y     LD +   +   +Q  A  TG +++   RI+NPT Q
Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
            +  D +G FI  W+PEL  VP   +  P  WL     +  Y +P+
Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441


>gi|331006214|ref|ZP_08329536.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
 gi|330419971|gb|EGG94315.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
          Length = 477

 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 196/460 (42%), Gaps = 43/460 (9%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAA--CHNSDAKVIAVFIATPEQWRQ-----HGISA 55
           A T     L+W  +DLRI DN  L+ A   +N+  +++ ++    E + Q       I+ 
Sbjct: 4   APTPEPTTLLWFTHDLRIHDNALLFYANKINNNKHRLLCLYCIDEEWFEQDRFGLQRIAT 63

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK--LFYNRQYE 113
            + +F+  SL  +   L   G      + +  +   + L  Y +   ++   + YN Q  
Sbjct: 64  HRWNFLVGSLHALNTELQALGQQLVIAKGNPTEIISDLLSRYSINTVISSNTVGYNEQAY 123

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVL------LPPG-SILNHALQMYKVYTPFRKALI 166
             E+         +Q       F +S L      LP   S     ++  K +  +  A+ 
Sbjct: 124 WQEISNKYPHLAFIQQETFTL-FAESQLPFLLNNLPDNFSKFRRLIESTKNHPHYLDAIK 182

Query: 167 QNLVQADLRSLPVPAIRL------TGPVTPS--NIPRFFDYPFQAIDPMFPIGEQNAL-H 217
            +L+    +  P   I L      + P T +  N     D         F  GE + + H
Sbjct: 183 SSLIGQPTKLPPKLHITLQEEHQFSWPRTSTIPNGKNNHDINANKNSLGFYGGEASGISH 242

Query: 218 ILRKFCKEKVYYYVEQRDIPAI-----QGTSQLSPYLSIGVLSPR---QCWNRLKEEFVD 269
           + + F      +Y + R+         Q +S+ SP+L+ G LS R   Q  +R +EE   
Sbjct: 243 LKQYFSTNAPSHYKDTRNALGCEKEEWQLSSKFSPWLANGSLSARYIVQMLSRYEEE--- 299

Query: 270 LLIKPKSGAFSWLN-ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
                 + +  W+  EL+WRE+++     Y      +  I     +  +      Q W  
Sbjct: 300 ---NGANDSTYWIMFELLWREYFQWYARKYGKKLFHRAGIQQRAPLA-SFYPQRFQQWCN 355

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G T +P+++A M+QLN  G++ NR R I AS L+ +L +DWR G  YF  QL+D D+A+N
Sbjct: 356 GSTPWPLVNACMKQLNQTGFLSNRGRQIVASVLIHELGLDWRCGAAYFEQQLIDYDVAAN 415

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
            G WQ+ A  G D     R FN   Q + +DP  T+I+ W
Sbjct: 416 WGNWQYIAGVGADPRG-GRQFNIDKQQQLYDPDETYIKRW 454


>gi|156055622|ref|XP_001593735.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980]
 gi|154702947|gb|EDO02686.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 651

 Score =  103 bits (258), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 28/221 (12%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLK---------EEFVDLLI---KPKSGAFSWLNELIWRE 289
           +++LS YL++G ++ RQ    +          + + DL         G ++   EL+WR+
Sbjct: 301 STKLSAYLALGSITSRQIHASMSVFENGSTSDDRYKDLEGYGNGENEGTYAVRFELLWRD 360

Query: 290 FYRHLM-AFYPSV-------CMGKPFIPWTEKIEWNKDS-------HLLQAWKQGYTGFP 334
           + R     F P +         G     W+ +++  KD         +++ +  G TG  
Sbjct: 361 YMRLCTRKFGPQLFRLGGFKAEGNAHSKWS-RLDSPKDGFSKEQIQEIVERFLNGTTGMG 419

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
            IDA+ R++   G+  NR R   ASFL K L +DWRIG E++   L+D D++SN G WQ+
Sbjct: 420 FIDASQREIYHTGYTSNRARQNVASFLSKHLYIDWRIGAEWYECMLVDYDVSSNWGNWQY 479

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
            A  GND     RIFNP  Q   +DP+  ++  W+ EL  V
Sbjct: 480 VAGVGNDPRGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGV 520


>gi|327484059|gb|AEA78466.1| Cryptochrome [Vibrio cholerae LMA3894-4]
          Length = 485

 Score =  103 bits (257), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 194/466 (41%), Gaps = 42/466 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  +
Sbjct: 4   INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + L+Q KG V           + +W    C  +   +      Y   EV      ++ L
Sbjct: 63  NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEVIYSHQEVGLACTFQRDL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181
                C+  D      P + +    Q  K +    + +++      +L +A+   L   A
Sbjct: 113 ALAQWCQQHDIVWHQLPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAA 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
           + L      S+IP  +         M   G   A   L  F   +   Y      P++  
Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
              S++SPYL+ G +S R+ +  L + +     +    A S    W    I +      M
Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F    C+ + +    ++   +  +  L AW+ G+TG P++DA MR L   G+++ R+R 
Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW-AASTGNDSVPYFRIFNPTIQ 414
           +  S L   + VDWR G  Y     LD +   +   +Q  A  TG +++   RI+NPT Q
Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
            +  D +G FI  W+PEL  VP   +  P  WL     +  Y +P+
Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441


>gi|40063354|gb|AAR38165.1| deoxyribodipyrimidine photolyase family protein [uncultured marine
           bacterium 580]
          Length = 478

 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 215/489 (43%), Gaps = 44/489 (8%)

Query: 9   VHLVWLRNDLRITDNKALY-AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++VWL+ DLR+TD+  LY A C   D + + ++I  P          R   FI  SL  
Sbjct: 5   TNIVWLKRDLRLTDHAPLYEATCR--DEQFLVLYIYEPSLINDSHTDERHWRFIQQSLSV 62

Query: 68  VQKSLSQKGIVFQYHQCS-NFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           ++K L++     Q  Q S  + ++ +       Q  +T +F + +  +     RDK L+K
Sbjct: 63  MEKILAK-----QSKQLSIAYGEADQIFSEIINQHEITNVFSHEETGLKLTYERDKKLKK 117

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIR 183
               + I      +  +  G  LN+     K +    +  I+  NL +A++ S   P   
Sbjct: 118 IFNAKKIQWHEYQTNAVIRG--LNNRKTWEKQWNKVMREEIKTINLAEANIISHNFPNY- 174

Query: 184 LTGPVTPSNIPRFF-DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                   +IP+F  D  +Q   P   +  Q  +H   +   +  + ++ + D  +    
Sbjct: 175 --------SIPKFRNDLNYQ---PGGCLPGQKEMHDFFETRGQDYFKFISKPD-RSRTSC 222

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS-- 300
           S+LSPY++ G LS R+ +  L + +     +    A S  + L W   + H +  Y S  
Sbjct: 223 SRLSPYIAYGNLSMREVYQTLLKSWNKTGWRRSMAALS--SRLHW---HCHFIQKYESEI 277

Query: 301 ----VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
               + + + +  +  K+  N +     AW  G TG+P+IDA+MR L   G+++ R+R +
Sbjct: 278 DIEDLPINRGYKDFPYKV-INCEHEDFLAWANGETGYPLIDASMRALKKTGYLNFRMRAM 336

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SF     ++ W++  ++  +  LD +   +    Q  A  G   +   RI+NP+ Q +
Sbjct: 337 VVSFACHYFMIHWKLVAKHLATLFLDFEPGIHYPQIQMQA--GVTGINTIRIYNPSKQLQ 394

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHA-PHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQY 474
             DP   FIR W+ EL++   +YI   P    D    S N YP P  D  +   +  N  
Sbjct: 395 DHDPDTKFIRDWIDELSDQDKEYILGLPDDNFDLFSNSQNFYPTPAYDFFERTKYAKNLL 454

Query: 475 YAAKKQSLL 483
           +  KK SL+
Sbjct: 455 WQWKKSSLV 463


>gi|295113007|emb|CBL31644.1| Deoxyribodipyrimidine photolyase [Enterococcus sp. 7L76]
          Length = 111

 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 61/90 (67%), Gaps = 6/90 (6%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ ++PEL  VP +Y
Sbjct: 2   LIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKY 61

Query: 440 IHAPHSWLDK------NDLSLNYPLPIVDH 463
           IH P+   +         L  NYP PIVD+
Sbjct: 62  IHQPNLMNEALQTQYHVHLGENYPKPIVDY 91


>gi|262190301|ref|ZP_06048568.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae CT 5369-93]
 gi|262033809|gb|EEY52282.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae CT 5369-93]
          Length = 504

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 194/466 (41%), Gaps = 42/466 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  +
Sbjct: 4   INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + L+Q KG V           + +W    C  +   +      Y   EV      ++ L
Sbjct: 63  NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181
                C+  D      P + +    Q  K +    + +++      +L +A+   L   A
Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAA 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
           + L      S+IP  +         M   G   A   L  F   +   Y      P++  
Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
              S++SPYL+ G +S R+ +  L + +     +    A S    W    I +      M
Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F    C+ + +    ++   +  +  L AW+ G+TG P++DA MR L   G+++ R+R 
Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414
           +  S L   + VDWR G  Y     LD +   +   +Q  A  TG +++   RI+NPT Q
Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
            +  D +G FI  W+PEL  VP   +  P  WL     +  Y +P+
Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441


>gi|149925501|ref|ZP_01913765.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
 gi|149825618|gb|EDM84826.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
          Length = 453

 Score =  103 bits (256), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 116/498 (23%), Positives = 204/498 (40%), Gaps = 68/498 (13%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + ++W + DLR++D+  L+ A  N+     V+ ++I  P Q      + +   F++  L 
Sbjct: 1   MQVLWFKRDLRLSDHMPLFEAMRNAKHHGLVLPLYIHEPSQILDAHTARQHQLFVHECLD 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEK 125
            +Q+  ++ G            ++++ L +   Q + T L+ +++  +  + +RD+ +  
Sbjct: 61  DLQQQFAKVGGYLH----EELGEAVDVLAALHAQFKFTHLWAHQETTQFAQYQRDRAVA- 115

Query: 126 RLQHRVICKSFDDSVL---LPPGSILNHALQMYKVYTPFRKAL---IQNLVQADLRSLPV 179
                  CKS  + V+   LP  ++           T   +A    I+N    +L++   
Sbjct: 116 -----AWCKS--EGVVFHELPQNNVQRARGNKADFQTYLNRAAQEEIKNPAGRNLQAFFA 168

Query: 180 PAIRLTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKF---CKEKVYYYVEQR 234
           P  R    +   N+P     D P +        G   A  +  KF    K K Y +    
Sbjct: 169 P--RPPPVLKRCNVPNAAGEDKPLR-----MKGGRTQARAVAAKFFTPAKLKSYPFSISS 221

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD---------LLIKPKSGAFSWLNEL 285
            + A  G S+LSPYL+ GV+S R+   +L    V+         L+ K +  A  +++ L
Sbjct: 222 PLKAWNGCSRLSPYLAYGVVSDREVLQKLNA-LVNTVHGQGDSVLISKVEDAARFYVDRL 280

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           IWR+ Y  L        +        E  E N++   L AW+ G TGF  IDA    L  
Sbjct: 281 IWRQGY--LQQLENHTGLETDAFYGDEPAEVNQE--FLNAWQHGRTGFAYIDACQHFLQQ 336

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GW++ R R    SF    L + W+    Y   Q LD + A + G  Q   ++G      
Sbjct: 337 TGWLNMRARATLVSFACVQLGLPWQPVALYLAQQFLDFEPAIHYG--QVRIASGTSHFSQ 394

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
             +++P  Q    DP+G F++ WLP                         YP PI+D+ +
Sbjct: 395 MLVYDPLKQQAEQDPKGEFVKRWLPGYGTA-------------------GYPAPIIDNAE 435

Query: 466 ACHHTLNQYYAAKKQSLL 483
           +      + +A ++  LL
Sbjct: 436 SLKQGKARLHAMRQNRLL 453


>gi|302745158|gb|ADL62682.1| cryptochrome 2b [Phreatichthys andruzzii]
          Length = 180

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371
           +I W+++   L  W +  TGFP IDA M QL   GW+H   R     FL + DL ++W  
Sbjct: 8   RIPWDRNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHYLARNAVTCFLTRGDLWINWEE 67

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G + F   LLD D + N G W    S  +    +F  + P   G+R DP G FIR +LP 
Sbjct: 68  GMKIFEELLLDADWSVNAGSWL-CHSCSSFFQQFFHCYCPVGFGRRIDPNGDFIRCYLPV 126

Query: 432 LNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
           L + P ++I+ P +  D      K  + ++YP P+V+H +A
Sbjct: 127 LRDFPAKFIYDPWNAPDDVQRAAKCVIGMDYPKPMVNHAEA 167


>gi|269965812|ref|ZP_06179907.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829547|gb|EEZ83786.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 343

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 114/241 (47%), Gaps = 16/241 (6%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--SQLSPYLSIGVLSPRQCWNRLKEE-- 266
           G + A   L  F   +   Y      P    T  ++LSPYL+ G +S R+ +  L +   
Sbjct: 44  GSRLAWKTLEDFFHRRGRDYYRSISSPTASRTACTRLSPYLAWGNISLREVYQYLLKHWQ 103

Query: 267 ---FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
              F   LI   S    W    I +    + M FY   C+ + + P  ++     D   L
Sbjct: 104 VAGFRRSLIA-LSSRLHWHCHFIQKFESEYDMEFY---CVNRAYEPLIKQSS-TFDEEKL 158

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            AWK G+TG P+IDA MR L+  G+++ R+R +  SFL   + +DWR+G  +     LD 
Sbjct: 159 AAWKSGHTGVPLIDACMRCLHHTGYINFRMRAMLVSFLTHHMNMDWRVGVTHLAQLFLDF 218

Query: 384 DLASNNGGWQW-AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
           +   +   +Q  A  TG +++   RI+NP  Q +  DP GTFI  W+PEL  VP   +  
Sbjct: 219 EPGIHYPQFQMQAGVTGTNTI---RIYNPIKQAQEHDPNGTFIYKWVPELQMVPPPLLFE 275

Query: 443 P 443
           P
Sbjct: 276 P 276


>gi|154305828|ref|XP_001553315.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10]
 gi|150853030|gb|EDN28222.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10]
          Length = 651

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 105/220 (47%), Gaps = 26/220 (11%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLK---------EEFVDLLIKPKS---GAFSWLNELIWRE 289
           +++LS YL++G ++ RQ  + +            + DL    K    G +    EL+WR+
Sbjct: 301 STKLSAYLALGSITSRQIHSSMSIFENGSDSDNRYKDLEGYGKGENEGTYGVRFELLWRD 360

Query: 290 FYRHLM-AFYPSVCMGKPF-------IPWT------EKIEWNKDSHLLQAWKQGYTGFPI 335
           + R     F P +     F         W+      + +   +   +++ +  G TG   
Sbjct: 361 YMRLCTRKFGPKLFQLGGFKDEENAHSKWSRLDSPRDGVSKEQIQEIIERFLNGTTGMGF 420

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           IDA+ R+    G+  NR R   ASFL K L +DWRIG E++   L+D D++SN G WQ+ 
Sbjct: 421 IDASQRECYHTGYTSNRARQNVASFLAKHLYIDWRIGAEWYECMLVDYDVSSNWGNWQYV 480

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           A  GND     RIFNP  Q   +DP+  ++  W+ EL  V
Sbjct: 481 AGVGNDPRGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGV 520


>gi|229515760|ref|ZP_04405219.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae TMA 21]
 gi|229347529|gb|EEO12489.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae TMA 21]
          Length = 504

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 116/466 (24%), Positives = 194/466 (41%), Gaps = 42/466 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  +
Sbjct: 4   INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + L+Q KG V           + +W    C  +   +      Y   EV      ++ L
Sbjct: 63  NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181
                C+  D      P + +    Q  K +    + +++      +L +A+   L   A
Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAA 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
           + L      S+IP  +         M   G   A   L  F   +   Y      P++  
Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
              S++SPYL+ G +S R+ +  L + +     +    A S    W    I +      M
Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F    C+ + +    ++   +  +  L AW+ G+TG P++DA MR L   G+++ R+R 
Sbjct: 285 EFR---CVNRAYDSLLQQSS-DVPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414
           +  S L   + VDWR G  Y     LD +   +   +Q  A  TG +++   RI+NPT Q
Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
            +  D +G FI  W+PEL  VP   +  P  WL     +  Y +P+
Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441


>gi|170878123|gb|ACB38886.1| putative 6-4 photolyase [Cercospora zeae-maydis]
          Length = 691

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 142/335 (42%), Gaps = 65/335 (19%)

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY--YVEQRDIPAI-- 239
           + GP    + P   +    A       GE   L  L +  K++ Y   + + +  PA   
Sbjct: 214 IAGPKGDFSPPTLEELGMPAATSPHKGGESVVLERLEEMFKDEDYTGTFQKPKTSPAAFE 273

Query: 240 -QGTSQLSPYLSIGVLSPRQCWNRLKEEFV--DLLIKPKSGA-FSWLNELIWREFY---R 292
            Q T   SPYL  G LS R  ++R+ E     +   KP S    S   +L++R+ Y   +
Sbjct: 274 PQSTFLTSPYLHFGALSCRYFYHRVAEIVAKRNKEKKPTSSPPESLAGQLLFRDMYFAAQ 333

Query: 293 HLMAFYPSVCMGKP---FIPW--------------------TEKIE-------------- 315
             + +     +G     FIPW                    +E+ E              
Sbjct: 334 AALGWQFGQTLGNSHCRFIPWHLPSKVDMSSKRITGAHEIDSEETELWLQRWTHGITGFP 393

Query: 316 W--NKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371
           W  ++++ L LQ W  G TGFP ID  MRQL   GW+H+  R   A FL +    + W  
Sbjct: 394 WIDSEETELWLQRWTHGTTGFPWIDVIMRQLRHEGWIHHLARHSVACFLTRGGCYISWER 453

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G E F   L+D + A N G WQW + T      ++R ++P   GK++D  G FIR ++PE
Sbjct: 454 GLEVFEELLIDHESACNIGNWQWLSCTAF-FAQFYRCYSPVAFGKKWDENGDFIRKFVPE 512

Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           L + P +YI+ PH              P+ D KKA
Sbjct: 513 LAHFPKKYIYEPHK------------APLADQKKA 535


>gi|254225326|ref|ZP_04918938.1| cryptochrome Cry2 [Vibrio cholerae V51]
 gi|125622167|gb|EAZ50489.1| cryptochrome Cry2 [Vibrio cholerae V51]
          Length = 504

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 194/467 (41%), Gaps = 44/467 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  +
Sbjct: 4   INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + L+Q KG V           + +W    C  +   +      Y   EV      ++ L
Sbjct: 63  NRDLAQSKGEVLIV--------TSDW--QTCFSRLAERYAIEAIYSHQEVGLACTFQRDL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181
                C+  D      P + +    Q  K +    + +++      +L +A+   L   A
Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAA 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
           + L      S+IP  +         M   G   A   L  F   +   Y      P++  
Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFVRRGREYYRSISSPSLAR 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEE-----FVDLLIKPKSGAFSWLNELIWREFYRHL 294
              S++SPYL+ G +S R+ +  L +      F   LI   S    W    I +      
Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIA-LSSRLHWHCHFIQKFESECE 283

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           M F    C+ + +    ++   +  +  L AW+ G+TG P++DA MR L   G+++ R+R
Sbjct: 284 MEFR---CVNRAYDSLLQQSS-DVPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMR 339

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTI 413
            +  S L   + VDWR G  Y     LD +   +   +Q  A  TG +++   RI+NPT 
Sbjct: 340 AMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTK 396

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           Q +  D +G FI  W+PEL  VP   +  P  WL     +  Y +P+
Sbjct: 397 QAQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441


>gi|323228031|gb|EGA12174.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
          Length = 84

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/82 (56%), Positives = 58/82 (70%)

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457
           TG D+ PYFRIFNPT QG+RFD  G FIR WLP L ++P + IH P  W +K  + L+YP
Sbjct: 1   TGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYP 60

Query: 458 LPIVDHKKACHHTLNQYYAAKK 479
            PIV+HK+A   TL+ Y AA+K
Sbjct: 61  RPIVEHKQARIATLSAYEAARK 82


>gi|183179386|ref|ZP_02957597.1| cryptochrome Cry2 [Vibrio cholerae MZO-3]
 gi|183012797|gb|EDT88097.1| cryptochrome Cry2 [Vibrio cholerae MZO-3]
          Length = 504

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 194/467 (41%), Gaps = 44/467 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  +
Sbjct: 4   INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + L+Q KG V           + +W    C  +   +      Y   EV      ++ L
Sbjct: 63  NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181
                C+  D      P + +    Q  K +    + +++      +L +A+   L   A
Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDDHWQQVMRSPCCDPDLTRANWLKLDAAA 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
           + L      S+IP  +         M   G   A   L  F   +   Y      P++  
Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFVRRGREYYRSISSPSLAR 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEE-----FVDLLIKPKSGAFSWLNELIWREFYRHL 294
              S++SPYL+ G +S R+ +  L +      F   LI   S    W    I +      
Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIA-LSSRLHWHCHFIQKFESECE 283

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           M F    C+ + +    ++   +  +  L AW+ G+TG P++DA MR L   G+++ R+R
Sbjct: 284 MEFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMR 339

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTI 413
            +  S L   + VDWR G  Y     LD +   +   +Q  A  TG +++   RI+NPT 
Sbjct: 340 AMLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTK 396

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           Q +  D +G FI  W+PEL  VP   +  P  WL     +  Y +P+
Sbjct: 397 QAQEHDSEGHFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441


>gi|74696815|sp|Q7SI68|CRYD_NEUCR RecName: Full=Putative cryptochrome DASH, mitochondrial; Flags:
           Precursor
 gi|38567324|emb|CAE76612.1| related to deoxyribodipyrimidine photo-lyase [Neurospora crassa]
          Length = 745

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 103/225 (45%), Gaps = 34/225 (15%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLN--------ELIWREFY 291
           +++LS YL+ G ++ RQ  + L   E+      K   G     N        EL+WR++ 
Sbjct: 300 STKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYM 359

Query: 292 RHLMAFYPSVCM------GK--PFIPWTEKIEW----------------NKDSHLLQAWK 327
           R     Y           GK   +    +K  W                 K S +L  + 
Sbjct: 360 RLCHQKYGDKLFRVEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFN 419

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TG  +IDA+ R+L   G+  NR R   ASFL K L +DWR G E++   L+D D++S
Sbjct: 420 AGTTGMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSS 479

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           N   WQ+ A  GND     RIFNP  Q   +D  GT++R W+PE+
Sbjct: 480 NWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEV 524


>gi|229521502|ref|ZP_04410921.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae TM 11079-80]
 gi|229341600|gb|EEO06603.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae TM 11079-80]
          Length = 499

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 193/466 (41%), Gaps = 42/466 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  +
Sbjct: 4   INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + L+Q KG V           + +W    C  +   +      Y   EV      ++ L
Sbjct: 63  NRDLAQSKGEVLIV--------TSDW--QTCFSRLAERYAIEAIYSHQEVGLACTFQRDL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181
                C+  D      P + +    Q  K +    + +++      +L +A+   L    
Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAV 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
           + L      S+IP  +         M   G   A   L  F   +   Y      P++  
Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
              S++SPYL+ G +S R+ +  L + +     +    A S    W    I +      M
Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F    C+ + +    ++   +  +  L AW+ G+TG P++DA MR L   G+++ R+R 
Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414
           +  S L   + VDWR G  Y     LD +   +   +Q  A  TG +++   RI+NPT Q
Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
            +  D +G FI  W+PEL  VP   +  P  WL     +  Y +P+
Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441


>gi|72012168|ref|XP_786331.1| PREDICTED: similar to cryptochrome [Strongylocentrotus purpuratus]
 gi|115937430|ref|XP_001183029.1| PREDICTED: similar to cryptochrome [Strongylocentrotus purpuratus]
          Length = 450

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 183/447 (40%), Gaps = 44/447 (9%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W R+ LR+ DN AL         +   VFI   E          +  F++  L+ + + L
Sbjct: 9   WFRHGLRLHDNPALLEG-MTLGKEFYPVFIFDNEVAGTKTSGYNRWRFLHDCLVDLDEQL 67

Query: 73  SQKG---IVFQYHQCSNFDDS-IEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              G    VF    C  F +  +EW   Y   +   +  +  +      RR K L K + 
Sbjct: 68  KAAGGRLFVFHGDPCLIFKEMFLEWGVRYLTFESDPEPIWTER-----DRRVKALCKEM- 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKV-YTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            +V C       L  P  I+        + Y+ F + + +  +    R +P P +     
Sbjct: 122 -KVECIERVSHTLWNPDIIIEKNGGTPPITYSMFMECVTE--IGHPPRPMPDPILTKVNM 178

Query: 188 VTPSNIPRFFDYPFQAI-----------DPMFPIGEQNALHI--LRKFCKEKVY---YYV 231
             PS+       P   +             ++  GE  AL +  +R   +E+ +   Y +
Sbjct: 179 KIPSDFEERCALPSLEVMGVNMECTEQEKKVWKGGETRALELFRVRILHEEEAFKGGYCL 238

Query: 232 EQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL----- 285
             + +P + GT + LS YL  G LS R+ + ++ + + ++        +  L E+     
Sbjct: 239 PNQYMPDLLGTPKSLSAYLRFGCLSVRRFYWKIHDTYSEVRSVSLFLVYRRLEEVSPSHL 298

Query: 286 ----IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
               IWRE++ + M+            P    IEW +D   L+AW  G TG+P IDA M+
Sbjct: 299 TAQVIWREYF-YTMSVGNIHFNKMKENPICLNIEWKEDDEKLKAWTDGRTGYPWIDACMK 357

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H   R  TA FL + DL + W  G + F   LLD D +   G W W +S+  
Sbjct: 358 QLKYEGWIHQVGRHATACFLTRGDLWISWEDGLQVFDKYLLDADWSICAGNWMWISSSAF 417

Query: 401 DS-VPYFRIFNPTIQGKRFDPQGTFIR 426
           +  +     F P   G+R DP G ++R
Sbjct: 418 EKFLQCPNCFCPVRYGRRMDPTGEYVR 444


>gi|164428444|ref|XP_965722.2| hypothetical protein NCU00582 [Neurospora crassa OR74A]
 gi|157072149|gb|EAA36486.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 722

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 103/225 (45%), Gaps = 34/225 (15%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLN--------ELIWREFY 291
           +++LS YL+ G ++ RQ  + L   E+      K   G     N        EL+WR++ 
Sbjct: 290 STKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYM 349

Query: 292 RHLMAFYPSVCM------GK--PFIPWTEKIEW----------------NKDSHLLQAWK 327
           R     Y           GK   +    +K  W                 K S +L  + 
Sbjct: 350 RLCHQKYGDKLFRVEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFN 409

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TG  +IDA+ R+L   G+  NR R   ASFL K L +DWR G E++   L+D D++S
Sbjct: 410 AGTTGMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSS 469

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           N   WQ+ A  GND     RIFNP  Q   +D  GT++R W+PE+
Sbjct: 470 NWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEV 514


>gi|157130453|ref|XP_001655724.1| DNA photolyase [Aedes aegypti]
 gi|108881984|gb|EAT46209.1| DNA photolyase [Aedes aegypti]
          Length = 321

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 105/232 (45%), Gaps = 15/232 (6%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEE 266
           GE  AL  L +  + K +     R     Q      + LSPYL  G LS R  + +L + 
Sbjct: 93  GETEALARLERHLERKAWVASFGRPKMTPQSLLARQTGLSPYLRFGCLSTRLFYYQLTDL 152

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQ 324
           +    IK      S   +L+WREF+       P+     G P      +I W++++  L 
Sbjct: 153 YKK--IKKACPPLSLYGQLLWREFFYCAATKNPNFDKMAGNPIC---VQISWDRNAEALA 207

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDG 383
            W  G TGFP IDA M QL   GW+H+  R   A FL + DL +    G + F   LLD 
Sbjct: 208 KWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISCEEGMKVFEELLLDA 267

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           D + N G W   +S       +F  + P   G++ DP G +IR +LP L  V
Sbjct: 268 DWSVNAGMWLSCSSFFQQ---FFHCYCPVKFGRKADPNGDYIRRYLPVLKEV 316


>gi|15641404|ref|NP_231036.1| deoxyribodipyrimidine photolyase, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121590807|ref|ZP_01678134.1| cryptochrome Cry2 [Vibrio cholerae 2740-80]
 gi|153817778|ref|ZP_01970445.1| cryptochrome Cry2 [Vibrio cholerae NCTC 8457]
 gi|153821321|ref|ZP_01973988.1| cryptochrome Cry2 [Vibrio cholerae B33]
 gi|227081563|ref|YP_002810114.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229505031|ref|ZP_04394541.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae BX 330286]
 gi|229511299|ref|ZP_04400778.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae B33]
 gi|229518417|ref|ZP_04407861.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae RC9]
 gi|229608035|ref|YP_002878683.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae MJ-1236]
 gi|254848511|ref|ZP_05237861.1| cryptochrome Cry2 [Vibrio cholerae MO10]
 gi|255745773|ref|ZP_05419721.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholera CIRS 101]
 gi|262158947|ref|ZP_06030059.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae INDRE 91/1]
 gi|298498528|ref|ZP_07008335.1| cryptochrome Cry2 [Vibrio cholerae MAK 757]
 gi|81858115|sp|Q9KS67|CRY2_VIBCH RecName: Full=Cryptochrome-like protein cry2
 gi|9655888|gb|AAF94550.1| deoxyribodipyrimidine photolyase, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547333|gb|EAX57450.1| cryptochrome Cry2 [Vibrio cholerae 2740-80]
 gi|126511716|gb|EAZ74310.1| cryptochrome Cry2 [Vibrio cholerae NCTC 8457]
 gi|126521139|gb|EAZ78362.1| cryptochrome Cry2 [Vibrio cholerae B33]
 gi|227009451|gb|ACP05663.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229345132|gb|EEO10106.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae RC9]
 gi|229351264|gb|EEO16205.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae B33]
 gi|229357254|gb|EEO22171.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae BX 330286]
 gi|229370690|gb|ACQ61113.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae MJ-1236]
 gi|254844216|gb|EET22630.1| cryptochrome Cry2 [Vibrio cholerae MO10]
 gi|255736848|gb|EET92245.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholera CIRS 101]
 gi|262029132|gb|EEY47784.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae INDRE 91/1]
 gi|297542861|gb|EFH78911.1| cryptochrome Cry2 [Vibrio cholerae MAK 757]
          Length = 504

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 193/466 (41%), Gaps = 42/466 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  +
Sbjct: 4   INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + L+Q KG V           + +W    C  +   +      Y   EV      ++ L
Sbjct: 63  NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181
                C+  D      P + +    Q  K +    + +++      +L +A+   L    
Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAT 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
           + L      S+IP  +         M   G   A   L  F   +   Y      P++  
Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
              S++SPYL+ G +S R+ +  L + +     +    A S    W    I +      M
Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F    C+ + +    ++   +  +  L AW+ G+TG P++DA MR L   G+++ R+R 
Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414
           +  S L   + VDWR G  Y     LD +   +   +Q  A  TG +++   RI+NPT Q
Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
            +  D +G FI  W+PEL  VP   +  P  WL     +  Y +P+
Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441


>gi|88860348|ref|ZP_01134986.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           tunicata D2]
 gi|88817546|gb|EAR27363.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           tunicata D2]
          Length = 500

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 197/454 (43%), Gaps = 45/454 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW + DLR++D+  L  A  +S   V+ ++   P        +AR   F++ SL  +
Sbjct: 5   INIVWFKRDLRLSDHAPLQHAFASS-IPVLLIYNFEPLLLDDPHYTARHWRFVWQSLADL 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
            + L++    F+       +  I  L     Q  +  LF +++  +N    RDK +    
Sbjct: 64  NQQLAR----FKTQIYIFSEPMIALLQRLGEQFEIRGLFSHQEIGLNNTFMRDKAVS--- 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVY--TPFRKALIQNLVQADLRSLPVPAIRLT 185
                C S           I+ H  Q   V      R+   Q    + L  +  P  +  
Sbjct: 117 ---AWCHS---------NKIVWHETQTGAVVRGKKHRRDWQQLWQNSILSQVSTPNWQQL 164

Query: 186 GPVTPSNIPRF-FDYPFQAIDPMFPIG-EQNALHILRKFCKEKVYYYVEQRDIPAIQ--G 241
             V  ++      D  +Q +D  F +G  + A  ++  F  E+   Y +    P++    
Sbjct: 165 NTVYLTDYQELKLDERYQMVDENFQLGGPKQARALIASFFVERGVGYQKGISSPSLSRLH 224

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW-----REFYRHLMA 296
            S+LSPYL+ G +S RQ +++    +       +    ++++ L W     ++F      
Sbjct: 225 CSRLSPYLAWGNVSLRQVYHQAIGHYEIAKRGWRKPLAAFISRLHWHCHFMQKFESESRI 284

Query: 297 FYPSVCMGKPFIPW--TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            +  + M     P+   E++E     H L  W+ G TG PIIDA MR L   G+++ R+R
Sbjct: 285 EFEPLNMAYLHYPYRTDEQVE-----HDLALWQHGNTGIPIIDACMRCLKHTGYINFRMR 339

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTI 413
            +  SF+   L + W+          LD +   +    Q  AS TG +++   R++NP  
Sbjct: 340 AMLVSFVTHHLNISWQQASMPLAQYFLDFEPGIHYPQIQMQASVTGMNTI---RLYNPIK 396

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           Q +  DP G FIR W PEL N+P++YIH P  WL
Sbjct: 397 QSQDQDPDGVFIRTWCPELKNLPSEYIHQP--WL 428


>gi|313230294|emb|CBY07998.1| unnamed protein product [Oikopleura dioica]
          Length = 429

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 158/369 (42%), Gaps = 33/369 (8%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQSHFIYASLLQVQK 70
            R DLRI DN +L AA  +   K++ VFI  PEQ  +      S     F+  SL QV K
Sbjct: 73  FRRDLRIFDNTSLIAAAADG-FKILPVFIFPPEQIDEKENEYFSHPCVQFMCLSLSQVHK 131

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L + G    + + +N D     L     +     ++ N  Y    V RD+ +     ++
Sbjct: 132 ELVKIGSKLNFIKLANADA----LTQLKKEVNFDAVYSNEDYSFYAVSRDQEVRSWCREN 187

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVP----AIRL 184
           RV     +D  ++     L+   +  + +  F +    N  V+        P    +  L
Sbjct: 188 RVKFVQKEDYGMMKLDENLDKHKRPIRTHAAFMRGFRANCTVRRPTEVAWTPDNFVSFDL 247

Query: 185 TGPVTPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              +    I  F++  P  A+ P    G    +  L+ F  EK+  Y  Q ++   Q TS
Sbjct: 248 NCEIPEQQIHTFYENNPKLAVTP----GRSGGMANLKSF--EKLVDYRAQHNM-LDQETS 300

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           + SP+   G +S R+ + R  + F +         F  + +L WRE Y  + A  P    
Sbjct: 301 RSSPHTKFGTVSVRETYWRGMDLFGE--------DFHVIRQLGWREMYLKVYAARPEWQK 352

Query: 304 GKPFIP-WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           G+       E ++W+ D  + Q W QG TGFPI+DA MR+LN  G+ HNR RM  AS L 
Sbjct: 353 GQSIHKILDEHVDWSYDEEVFQKWCQGETGFPIVDAGMRELNETGFQHNRARMNCASVLT 412

Query: 363 --KDLLVDW 369
               L+  W
Sbjct: 413 WGGQLMAAW 421


>gi|229523510|ref|ZP_04412915.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae bv. albensis VL426]
 gi|229337091|gb|EEO02108.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae bv. albensis VL426]
          Length = 506

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 193/466 (41%), Gaps = 42/466 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  +
Sbjct: 6   INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 64

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + L+Q KG V           + +W    C  +   +      Y   EV      ++ L
Sbjct: 65  NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181
                C+  D      P + +    Q  K +    + +++      +L +A+   L    
Sbjct: 115 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAT 174

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
           + L      S+IP  +         M   G   A   L  F   +   Y      P++  
Sbjct: 175 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 226

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
              S++SPYL+ G +S R+ +  L + +     +    A S    W    I +      M
Sbjct: 227 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 286

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F    C+ + +    ++   +  +  L AW+ G+TG P++DA MR L   G+++ R+R 
Sbjct: 287 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 342

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414
           +  S L   + VDWR G  Y     LD +   +   +Q  A  TG +++   RI+NPT Q
Sbjct: 343 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 399

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
            +  D +G FI  W+PEL  VP   +  P  WL     +  Y +P+
Sbjct: 400 AQEHDSEGHFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 443


>gi|297624491|ref|YP_003705925.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
           17093]
 gi|297165671|gb|ADI15382.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
           17093]
          Length = 486

 Score =  101 bits (252), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 120/260 (46%), Gaps = 26/260 (10%)

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA------FSWLNELIWREFY 291
           A++  S+LSPYL++G LS RQ +       ++L     +G+       ++   L WR+ +
Sbjct: 206 ALRYASRLSPYLALGNLSVRQVFAASARRRLELRAHLGAGSRFERALLAFETRLRWRDAF 265

Query: 292 RHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
              + +YP      + + F    E +        L+A+  G TG+P++DA MR L   GW
Sbjct: 266 IQKLEWYPRTEFENLNRGFDGMREGLPEVLARERLEAFAAGRTGYPMVDACMRALQAGGW 325

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA---ASTGNDSVPY 405
           ++ R+R +  SF    L +DWR      + +LL         G  W      +G   V  
Sbjct: 326 LNFRMRALLVSFACYHLWLDWRP-----VGRLLARGWLDYEPGIHWPQLQMQSGVTGVHA 380

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSL----NYPLP 459
            RI++P  Q +  DP G FIR W+PEL  +PT  +  P +   L +  L      +YP P
Sbjct: 381 PRIYSPAKQARDHDPTGAFIRRWVPELAGLPTHDLAEPWAAPPLVQTMLGCVVGKHYPAP 440

Query: 460 IVDHKKA---CHHTLNQYYA 476
           IVD K A      TL  + A
Sbjct: 441 IVDPKAAYAEARRTLGAWRA 460



 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 9  VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
          V+LVW + DLR+ D+  L  A       V+ +++  PE +     S      +  SLL +
Sbjct: 7  VNLVWFKRDLRVADHAPLREAARRG--AVLCLYVYEPEVYGAETFSGAHLELLNQSLLSL 64

Query: 69 QKSLSQKG--IVFQYHQCSNFDDSI 91
          +  L+ +G  +VF+  +     +++
Sbjct: 65 EAELAARGGRLVFRVGEMPAVLEAL 89


>gi|77462528|ref|YP_352032.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           2.4.1]
 gi|77386946|gb|ABA78131.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           2.4.1]
          Length = 454

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 191/494 (38%), Gaps = 93/494 (18%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W RNDLR+ D+ AL  A   +D +V+ + I  P +W     S RQ  F    L  ++ 
Sbjct: 4   LIWFRNDLRVADHPALARA---ADDRVLPLAIVDPAEWADPARSGRQWAFRAECLADLRA 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G            D+   L   C   R+                          R
Sbjct: 61  DLAALGAPLAV----RVGDAQAVLSKLCKLHRIG-------------------------R 91

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           ++C   +D    P  + L+ ALQ +   T      ++    A     P+PA+   GP+ P
Sbjct: 92  ILC--LED----PAFAELDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVE-PGPIPP 144

Query: 191 SNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD--IPAIQGTSQLS 246
           +   R  +   P +      P G      +L+ F + +   Y + R+  + A + +S+LS
Sbjct: 145 ARALRLAEDRCPHRQ-----PGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLS 199

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L+ G LS        +EE +  +    +            ++ R L AF  ++  G P
Sbjct: 200 PHLAAGTLS--------REEVLAAVAARLAERPD-------ADWVRSLGAFRAALASGAP 244

Query: 307 FI-----------------PWTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTIG 347
                               + ++ E   D+  L+  A   G TG P +DAA+R +   G
Sbjct: 245 GARGAVCPPGRPGGGGSPRGYLDQTEGEADALRLRLAALHAGETGLPFVDAALRAMAASG 304

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+  RLR + AS  +  L +  +       + L D     ++    WA       V   R
Sbjct: 305 WLPARLRGMLASVALHHLGLSEQAAGAALAAGLTD-----HSPPIHWAQMR---RVALGR 356

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPLPIVD--HK 464
             +P       DP G F R WLPEL  VP + + AP  W   +  L   YP P+VD    
Sbjct: 357 PVDPERLAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAA 416

Query: 465 KACHHTLNQYYAAK 478
           +A   TL +   A+
Sbjct: 417 RAAGRTLARRPTAR 430


>gi|153830168|ref|ZP_01982835.1| cryptochrome Cry2 [Vibrio cholerae 623-39]
 gi|148874347|gb|EDL72482.1| cryptochrome Cry2 [Vibrio cholerae 623-39]
          Length = 504

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 192/466 (41%), Gaps = 42/466 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  +
Sbjct: 4   INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + L+Q KG V           + +W    C  +   +      Y   EV      ++ L
Sbjct: 63  NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181
                C+  D      P + +    Q  K +    + +++      +L +A+   L    
Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAT 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
           + L      S+IP  +         M   G   A   L  F   +   Y      P++  
Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFARRGREYYRSISSPSLAR 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
              S++SPYL+ G +S R+ +  L + +     +    A S    W    I +      M
Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F    C+ + +    ++      +  L AW+ G+TG P++DA MR L   G+++ R+R 
Sbjct: 285 EFR---CVNRAYDSLLQQSS-QAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414
           +  S L   + VDWR G  Y     LD +   +   +Q  A  TG +++   RI+NPT Q
Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
            +  D +G FI  W+PEL  VP   +  P  WL     +  Y +P+
Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441


>gi|52699557|gb|AAU86901.1| cryptochrome 2 [Sylvia borin]
          Length = 244

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 8/147 (5%)

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384
           W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G   F   LLD D
Sbjct: 1   WAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDAD 60

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            + N G W W + +      +F  + P   G+R DP G +++ +LP+L   P++YI+ P 
Sbjct: 61  FSVNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPW 119

Query: 445 SWLD------KNDLSLNYPLPIVDHKK 465
           +  +      K  + ++YP P+V+H +
Sbjct: 120 NAPESVQKAAKCIIGVDYPKPMVNHAE 146


>gi|121727525|ref|ZP_01680637.1| cryptochrome Cry2 [Vibrio cholerae V52]
 gi|147673506|ref|YP_001216950.1| cryptochrome Cry2 [Vibrio cholerae O395]
 gi|153212697|ref|ZP_01948354.1| cryptochrome Cry2 [Vibrio cholerae 1587]
 gi|262169310|ref|ZP_06037002.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae RC27]
 gi|121630109|gb|EAX62512.1| cryptochrome Cry2 [Vibrio cholerae V52]
 gi|124116347|gb|EAY35167.1| cryptochrome Cry2 [Vibrio cholerae 1587]
 gi|146315389|gb|ABQ19928.1| cryptochrome Cry2 [Vibrio cholerae O395]
 gi|227013307|gb|ACP09517.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
 gi|262022123|gb|EEY40832.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae RC27]
          Length = 504

 Score =  101 bits (251), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 193/466 (41%), Gaps = 42/466 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  +
Sbjct: 4   INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + L+Q KG V           + +W    C  +   +      Y   EV      ++ L
Sbjct: 63  NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181
                C+  D      P + +    Q  K +    + +++      +L +A+   L    
Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAT 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
           + L      S+IP  +         M   G   A   L  F   +   Y      P++  
Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFVRRGREYYRSISSPSLAR 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
              S++SPYL+ G +S R+ +  L + +     +    A S    W    I +      M
Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F    C+ + +    ++   +  +  L AW+ G+TG P++DA MR L   G+++ R+R 
Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414
           +  S L   + VDWR G  Y     LD +   +   +Q  A  TG +++   RI+NPT Q
Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
            +  D +G FI  W+PEL  VP   +  P  WL     +  Y +P+
Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQVPL 441


>gi|153825249|ref|ZP_01977916.1| cryptochrome Cry2 [Vibrio cholerae MZO-2]
 gi|149741077|gb|EDM55136.1| cryptochrome Cry2 [Vibrio cholerae MZO-2]
          Length = 504

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 192/466 (41%), Gaps = 42/466 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  +
Sbjct: 4   INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + L+Q KG V           + +W    C  +   +      Y   EV      ++ L
Sbjct: 63  NRDLAQSKGEVLIV--------TSDW--QTCFARIAERYAIEAIYSHQEVGLACTFQRDL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181
                C+  D      P + +    Q  K +    + +++      +L  A+   L    
Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTSANWLKLDAAT 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
           + L      S+IP  +         M   G   A   L  F   +   Y      P++  
Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWATLEDFFVRRGREYYRSISSPSLAR 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
              S++SPYL+ G +S R+ +  L + +     +    A S    W    I +      M
Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F    C+ + +    ++   +  +  L AW+ G+TG P++DA MR L   G+++ R+R 
Sbjct: 285 EFR---CVNRAYDSLLQQSS-DAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414
           +  S L   + VDWR G  Y     LD +   +   +Q  A  TG +++   RI+NPT Q
Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
            +  D +G FI  W+PEL  VP   +  P  WL     +  Y +P+
Sbjct: 398 AQEHDSEGQFIHKWVPELAQVPVPLLFEP--WLMTPLEAQMYQIPL 441


>gi|13543860|gb|AAH06077.1| Cry2 protein [Mus musculus]
          Length = 243

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 8/145 (5%)

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386
           +G TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D +
Sbjct: 1   EGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFS 60

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
            N G W W + +      +F  + P   G+R DP G +IR +LP+L   P++YI+ P + 
Sbjct: 61  VNAGSWMWLSCSAFFQQ-FFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNA 119

Query: 447 LD------KNDLSLNYPLPIVDHKK 465
            +      K  + ++YP PIV+H +
Sbjct: 120 PESVQKAAKCIIGVDYPRPIVNHAE 144


>gi|94501553|ref|ZP_01308071.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
 gi|94426371|gb|EAT11361.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
          Length = 440

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 20/227 (8%)

Query: 211 GEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           GEQ  L H+   F       Y   R+ +   + +S+ S +L+ G LS R     L++ F 
Sbjct: 203 GEQKGLEHLYDYFNGSYALQYKATRNALDGWENSSKFSYWLAQGSLSVRLILQELRQ-FE 261

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFY-------PSVCMGKPFIPWTEKIEWNKDSH 321
            L    +S    ++ EL+WREF++    FY         +   +P   +  +        
Sbjct: 262 SLHSNNESTEHLYM-ELLWREFFQWYSHFYGKQLFYFSGIQKKRPLTTFYPQA------- 313

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             + W +G+T +P+++A M QL T G+M NR R I AS L+ +L VDWR G + F   LL
Sbjct: 314 -FRMWLEGHTEWPLVNACMNQLRTTGYMSNRGRQIVASCLLNELKVDWRAGAQAFEHYLL 372

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           D D+A+N G WQ+ A  G D     R FN   Q + +DP   FI  W
Sbjct: 373 DYDVAANWGNWQYIAGVGADPRG-GRHFNIEKQTQLYDPDNLFIDKW 418


>gi|169609250|ref|XP_001798044.1| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15]
 gi|160701810|gb|EAT85178.2| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15]
          Length = 582

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 129/286 (45%), Gaps = 44/286 (15%)

Query: 198 DYPFQA-IDPMFPI---GEQNAL----HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
           D PF+   D  F I   GE++ L    H++R        Y   +  +  +  +++LS YL
Sbjct: 190 DIPFKLWADEKFYIDDGGEEHGLDRIAHLIRSGAMSS--YKATRNGMLGLDFSTKLSAYL 247

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKS----------GAFSWLNELIWREFYR------- 292
           + G ++ RQ    +K+ F +   + K           G  +   EL+WR++ R       
Sbjct: 248 AQGHITARQVHWAMKD-FEEGRGEGKGIAGYGKGENEGTAAVRFELLWRDYMRLCMRKFG 306

Query: 293 -HLMAFYP----SVCMGKPFI----------PWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
             + A Y         G   I          P     +  K+    Q ++ G TG  +ID
Sbjct: 307 HKMFALYGIQPHRKGQGDEPIYKKRWRMVHKPNGAGDDHKKNMETFQRFRSGRTGVGLID 366

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           A+ R+L   G+  NR R   ASFL   L +DWRIG E++   L+D D+ASN G WQ+ A 
Sbjct: 367 ASNRELFCTGYTSNRARQNVASFLSSHLDIDWRIGAEWYEMLLIDYDVASNWGNWQYVAG 426

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
            GND     RIFNP  Q   +D +G +I+ W+PEL  +      AP
Sbjct: 427 VGNDPRQ-GRIFNPVKQAFDYDGKGEYIKAWVPELRQLKLTKTVAP 471


>gi|221638381|ref|YP_002524643.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           KD131]
 gi|221159162|gb|ACM00142.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           KD131]
          Length = 454

 Score =  100 bits (250), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 119/490 (24%), Positives = 179/490 (36%), Gaps = 85/490 (17%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W RNDLR+ D+ AL  A   +D +V+ + I  P +W     S RQ  F    L  ++ 
Sbjct: 4   LIWFRNDLRVADHPALARA---ADDRVLPLAIVDPAEWADPARSGRQWAFRTECLADLRA 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G            D    L   C   R+ ++F        E              
Sbjct: 61  DLAALGAPLAV----RVGDPQAVLSKLCRLHRIRRIFCLEDPAFAE-------------- 102

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                            L+ ALQ +   T      ++    A     P+PA+   GP+ P
Sbjct: 103 -----------------LDLALQAWAAGTGLELIRLKPGPGAPAALTPLPAVE-PGPIPP 144

Query: 191 SNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD--IPAIQGTSQLS 246
           +   R  +   P +      P G      +L+ F + +   Y + R+  + A + +S+LS
Sbjct: 145 ARALRLAEDRCPHRQ-----PGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLS 199

Query: 247 PYLSIGVLS---------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           P+L+ G LS               P   W R    F   L    +GA   +      E  
Sbjct: 200 PHLAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGATGARGAVCPPAAPEGA 259

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                 + +   GKP          +     L A   G TG P +DAA+R +   GW+  
Sbjct: 260 APPEDIW-TRLKGKP----------DALRLRLAALHAGETGLPFVDAALRAMAASGWLPA 308

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLR + AS  +  L +  +       + L D     ++    WA       V   R  +P
Sbjct: 309 RLRGMLASVALHHLGLSEQAAGAALAAGLTD-----HSPPIHWAQMR---RVALGRPVDP 360

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPLPIVD--HKKACH 468
                  DP G F R WLPEL  VP + + AP  W   +  L   YP P+VD    +A  
Sbjct: 361 ERLAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAG 420

Query: 469 HTLNQYYAAK 478
            TL +   A+
Sbjct: 421 RTLARRPTAR 430


>gi|254286160|ref|ZP_04961120.1| cryptochrome Cry2 [Vibrio cholerae AM-19226]
 gi|150423829|gb|EDN15770.1| cryptochrome Cry2 [Vibrio cholerae AM-19226]
          Length = 504

 Score =  100 bits (249), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 192/466 (41%), Gaps = 42/466 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  +
Sbjct: 4   INLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQAI 62

Query: 69  QKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + L+Q KG V           + +W    C  +   +      Y   EV      ++ L
Sbjct: 63  NRDLAQSKGEVLIV--------TSDW--QTCFSRIAERHAIEAIYSHQEVGLACTFQRDL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------NLVQADLRSLPVPA 181
                C+  D      P + +    Q  K +    + +++      +L +A+   L    
Sbjct: 113 ALAQWCQQHDIVWHEFPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAAT 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
           + L      S+IP  +         M   G   A   L  F   +   Y      P++  
Sbjct: 173 LGLR-----SDIPATWQSKQAG---MQTGGSDMAWTTLEDFFARRGRDYYRSISSPSLAR 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
              S++SPYL+ G +S R+ +  L + +     +    A S    W    I +      M
Sbjct: 225 HACSRMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALSSRLHWHCHFIQKFESECEM 284

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F    C+ + +    ++      +  L AW+ G+TG P++DA MR L   G+++ R+R 
Sbjct: 285 EFR---CVNRAYDSLLQQSS-QATTAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRA 340

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQ 414
           +  S L   + VDWR G  Y     LD +   +   +Q  A  TG +++   RI+NPT Q
Sbjct: 341 MLVSVLTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQ 397

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
            +  D +G FI  W+PEL  VP   +  P  WL     +  Y +P+
Sbjct: 398 AQEHDSEGLFIHKWVPELAQVPVPLLFEP--WLMTPFEAQMYQVPL 441


>gi|254480196|ref|ZP_05093444.1| FAD binding domain of DNA photolyase, putative [marine gamma
           proteobacterium HTCC2148]
 gi|214039758|gb|EEB80417.1| FAD binding domain of DNA photolyase, putative [marine gamma
           proteobacterium HTCC2148]
          Length = 227

 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 104/218 (47%), Gaps = 7/218 (3%)

Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           V  Y E R+ +  +  +S LSP+L+ G L+  +    L +   + L         + +EL
Sbjct: 7   VTSYKETRNQLDGLFYSSFLSPWLANGSLAVSKLAWELDQ--FEKLHGANDSTRHFYSEL 64

Query: 286 IWREF-YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           +WREF YR  +    S+   K      E+     D      W  G T +P+++A M QL 
Sbjct: 65  LWREFFYRREVEDSSSLFRAKGTA--RERKLVTFDPRGFARWCAGATDYPLVNALMHQLV 122

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             GWM NR R I AS LV ++ VDWR G  +F   LLD D ASN G WQ+ A  G D   
Sbjct: 123 ESGWMSNRGRQIAASCLVNEMNVDWRFGAAFFEQHLLDYDAASNYGNWQYIAGVGADPRG 182

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
             R F+   Q ++FDP+G F + W       P   + A
Sbjct: 183 G-RHFDLVKQTRQFDPEGEFTQRWEGYCPKQPEHIVDA 219


>gi|189200290|ref|XP_001936482.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983581|gb|EDU49069.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 675

 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 27/228 (11%)

Query: 242 TSQLSPYLSIGVLSPRQC-WNRLKEEFVDLLIKPK--------SGAFSWLNELIWREFYR 292
           +++LS YL+ G ++ RQ  W  L  E      + K         G  +   EL+WR++ R
Sbjct: 331 STKLSAYLAQGHITARQVHWAMLDFEEGRGPGEKKHAYGQGENEGTAAVRFELLWRDYMR 390

Query: 293 HLMAFYPSVCMG-----------------KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
             M  +     G                 K      +  +  K   + + ++ G TG  +
Sbjct: 391 LCMRKFGHKMFGLYGIQDRGAKGSQHKKWKKLYKGEDGEDPQKTMEVFERFRSGRTGVGL 450

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           IDA+ R+L   G+  NR R   ASFL   L +DWR+G E++   L+D D ASN G WQ+ 
Sbjct: 451 IDASNRELFVTGYTSNRARQNVASFLSSHLNIDWRVGAEWYECFLVDYDAASNWGNWQYV 510

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           A  GND     R+FNP  Q   +D +G +I+ W+PEL ++       P
Sbjct: 511 AGVGNDPR-QGRVFNPVKQALDYDKRGEYIKAWVPELRDIKLTRTVGP 557


>gi|312212963|emb|CBX93045.1| hypothetical protein [Leptosphaeria maculans]
          Length = 989

 Score =  100 bits (248), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 1/110 (0%)

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           ++ G TG  +IDA+ R+L   G+  NR R   ASFL   L +DWRIG E++   L D D 
Sbjct: 752 FRSGRTGVGLIDASNRELFVTGYTSNRARQNVASFLASHLNIDWRIGAEWYECFLTDYDC 811

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           ASN G WQ+ A  GND     R+FNP  Q   +DP+G +I+ W+PEL  +
Sbjct: 812 ASNWGNWQYVAGVGNDPR-QGRVFNPVKQAFDYDPKGEYIKAWVPELRGI 860


>gi|47215847|emb|CAG02310.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 606

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 106/232 (45%), Gaps = 16/232 (6%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  + +  + K +    +R  P +   S       LSPYL  G LS R  +
Sbjct: 176 VWPGGETEALTRIERHLERKAWVANFER--PRMNANSLLASPTGLSPYLRFGCLSCRLFY 233

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNK 318
            +L + +  +  K  S   S   +L+WREF+       P      G P      +I W++
Sbjct: 234 FKLTDLYRKV-KKNTSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPIC---VRIPWDR 289

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFM 377
           +   L  W +  TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F 
Sbjct: 290 NMEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFE 349

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             LLD D + N G W W  S  +    +F  + P   G+R DP G FI   L
Sbjct: 350 ELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDFISRSL 400


>gi|221124384|ref|XP_002163516.1| PREDICTED: similar to cryptochrome dash [Hydra magnipapillata]
          Length = 438

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 8/203 (3%)

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y   +  +  +  +S+ SP+L++G +S  +    LK    +       G++    EL+WR
Sbjct: 237 YKATRNGLTGMAYSSKWSPWLALGAVSAPELMAALKAH--EREHGTTDGSYWLWFELLWR 294

Query: 289 EFYRHLMAFYPSVCM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +++R L   Y +      G      +E++  ++ S  L  W QG TG  ++DA MR+L  
Sbjct: 295 DYFRWLHLQYGAGLYRPKGLLEAAKSERVPHHRRSFTL--WTQGRTGCDLVDAGMRELAC 352

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G++ NR+R + ASFL+ +L  DWR G  +F SQLLD D+ SN G W + A  G D    
Sbjct: 353 SGYLSNRMRQVVASFLIYELGCDWRAGAAWFESQLLDFDVYSNQGNWLYIAGLGTDPRG- 411

Query: 406 FRIFNPTIQGKRFDPQGTFIRHW 428
            R FN   Q    DP G +   W
Sbjct: 412 GRRFNVAKQTADHDPDGAYRALW 434


>gi|46129334|ref|XP_389028.1| hypothetical protein FG08852.1 [Gibberella zeae PH-1]
 gi|97047717|sp|Q4I1Q6|CRYD_GIBZE RecName: Full=Putative cryptochrome DASH
          Length = 678

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 75/139 (53%), Gaps = 7/139 (5%)

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           ++  W +G TG  ++DA+ R+L   G+  NR R   AS+L K L +DWR+G EY+   L+
Sbjct: 387 MIDRWIRGTTGMGLVDASQRELQLTGYTSNRARQNVASYLTKSLGIDWRLGAEYYEQSLI 446

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT---- 437
           D D  SN G WQ+ AS GND  P  R FN   Q   +D  G F R W+ E+ ++      
Sbjct: 447 DYDTHSNWGNWQYQASCGND--PRSRSFNQVKQAFDYDQDGRFTRTWVNEVKSIDRLEHV 504

Query: 438 -QYIHAPHSWLDKNDLSLN 455
            Q    P   L+K+ LS N
Sbjct: 505 FQICTCPKQELEKHGLSDN 523


>gi|332141437|ref|YP_004427175.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327551459|gb|AEA98177.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 478

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 197/464 (42%), Gaps = 53/464 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           +   T   + ++WL+ DLR+ D++ L+ A   S+ +++ ++   P    +  +S R  HF
Sbjct: 2   LSDNTKPPITIIWLKRDLRLRDHEPLFRAV-ASNERILLLYCWEPSLIEEPHMSVRHWHF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY-------CLQQRVTKLFYNRQYE 113
           I  S+  +   L +   V   H  +   D++ ++  +         Q+   K+ YNR   
Sbjct: 61  IQQSIDDINGQLPEHVNVLTLHMEAV--DALAFISRFYTINAVRSYQEIGLKVTYNRDLR 118

Query: 114 I-NEV--RRDKLLEKR-------LQHRVICKSFDDSVLLPPGSILNHALQM-----YKVY 158
           + N +  RR   LE +       L HR   K+  +       S  ++ L+      + V+
Sbjct: 119 VANHLNNRRIPFLEAKCGAVIRGLPHRAQWKANWEEYFAE--STYDYDLKRANWVKWNVH 176

Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI 218
              +KA   +L  +++ +L      +             +        M P GE+ A  +
Sbjct: 177 VDIQKA---SLTLSEVSALYAAKKYINKDYLSKYCGVLSEDGLIDFSAMQPGGERRAWQV 233

Query: 219 LRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWN---RLKEEFVDLLIK 273
           L+ F  ++  YY +    P  A +  S+LSPYL+ G +S +Q +    R K +   L I 
Sbjct: 234 LKDFFNDRGQYYHQHISKPEYARRACSRLSPYLAWGNISIKQVYQSVQRQKHKKRALPIH 293

Query: 274 PK----------SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            K          +    W    I +    H + + P     + F P+ +  E  +     
Sbjct: 294 EKKRWSRALSALTSRLHWHCHFIQKFESEHSIEWRPMNSAYENF-PYIDGPEAERR---F 349

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             W  G TG+P++DA MR L   G+++ R+R +  SFL   L V W     Y  +Q LD 
Sbjct: 350 YHWSIGQTGYPLVDACMRALRQTGYLNFRMRAMVTSFLCHHLNVHWIKAAHYLATQFLDF 409

Query: 384 DLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +   +    Q  AS TG  +V   R++NP  Q K+ DP+G FI+
Sbjct: 410 EPGIHYPQIQMQASVTGIHTV---RLYNPASQSKKLDPEGEFIK 450


>gi|126461462|ref|YP_001042576.1| DNA photolyase domain-containing protein [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126103126|gb|ABN75804.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 454

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 190/495 (38%), Gaps = 95/495 (19%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W RNDLR+ D+ AL  A   +D +V+ + I  P +W     S RQ  F    L  ++ 
Sbjct: 4   LIWFRNDLRVADHPALARA---ADDRVLPLAIVDPAEWADPARSGRQWAFRAECLADLRA 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G            +    L   C   R+                          R
Sbjct: 61  DLAALGAPLAV----RVGEPQAVLSKLCRLHRIG-------------------------R 91

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           ++C   +D       + L+ ALQ +   T      ++    A     P+PA+   GP+ P
Sbjct: 92  ILC--LEDPAF----AELDLALQAWAGGTGLDFIRLKPCAGAPAALTPLPAVE-PGPIPP 144

Query: 191 SNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD--IPAIQGTSQLS 246
           +   R  +   P +      P G      +L+ F + +   Y + R+  + A + +S+LS
Sbjct: 145 ARALRLAEDRCPHRQ-----PGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLS 199

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L+ G LS        +EE +  +    +            ++ R L AF  ++  G P
Sbjct: 200 PHLAAGTLS--------REEVLAAVAARLAERPD-------ADWVRSLGAFRAALASGAP 244

Query: 307 FIP------------------WTEKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLNTI 346
                                WT +++   D+  L+  A   G TG P +DAA+R +   
Sbjct: 245 GARGAVCPPAAPEGAAPPEDIWT-RLKGKPDALRLRLAALHAGETGLPFVDAALRAMAAS 303

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GW+  RLR + AS  +  L +  +       + L D     ++    WA       V   
Sbjct: 304 GWLPARLRGMLASVALHHLGLSEQAAGAALAAGLTD-----HSPPIHWAQMR---RVALG 355

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPLPIVD--H 463
           R  +P       DP G F R WLPEL  VP + + AP  W   +  L   YP P+VD   
Sbjct: 356 RPVDPERLAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSA 415

Query: 464 KKACHHTLNQYYAAK 478
            +A   TL +   A+
Sbjct: 416 ARAAGRTLARRPTAR 430


>gi|300771338|ref|ZP_07081214.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762008|gb|EFK58828.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
          Length = 425

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 173/404 (42%), Gaps = 28/404 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS-LLQ 67
           V L+W RNDLR  DN+ L+     S   +I V+   P  + +     R++    A  +L 
Sbjct: 5   VTLIWFRNDLRFHDNEILFETVSKSPI-IIPVYCFDPRYFSKKSSGHRKTGVHRARFILD 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             + L +K +       S      E +     +  V ++F++R+    E    + +E  L
Sbjct: 64  AVRELKEKFVAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISENVETAL 123

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLT 185
            + ++  K F    L     +      +   +  F+K + +   ++ +R   P P + +T
Sbjct: 124 WKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIER---ESTVRQPFPTPEVMVT 180

Query: 186 GP-VTPSNIPRF--FDYPFQAIDPMF--PI----GEQNALHILRKFCKEKVYYYVEQRDI 236
            P +  + IP      Y  + I      PI    GE  AL  + +    +   + EQ D 
Sbjct: 181 HPHLEKTTIPTLEELGYTTEEIQTANNNPIHLRGGEDEALKKVEEVLSGQ---FNEQLDY 237

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                   LSPY++ G LSP   ++++K+     L+  K        +L+WR+++R ++ 
Sbjct: 238 ------MMLSPYIAAGALSPIYLYHKIKDA---KLVLNKKRTEKLTAQLLWRDYFRFMLK 288

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            YP+V   K     +E      +   L+ W+ G TG+  ID AM+ L+  G + + ++ I
Sbjct: 289 KYPNVFFKKNGTGKSEYSNVETNPEDLKKWQSGQTGYEFIDKAMQFLSQTGNLPSDIKKI 348

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
            + F V++   DWR G  YF   L+D   A+  G W   A  G 
Sbjct: 349 VSLFFVQEYQGDWRKGASYFEDMLIDYAPATTYGYWAHYAGVGT 392


>gi|303276951|ref|XP_003057769.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460426|gb|EEH57720.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 502

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 128/289 (44%), Gaps = 41/289 (14%)

Query: 181 AIRLTGPVTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD-- 235
           ++RLT        PRF    D+    I   + I E+ A  +   F +  +  Y  +    
Sbjct: 162 SVRLTSLDDLGVSPRFPPGRDWS-SGIRDEWDISERGANEVWASFTRRGLPEYEAEHGRA 220

Query: 236 --IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW-----R 288
             +     TS++SPYL  G +SPR  ++ LK      +           + L W     R
Sbjct: 221 DAVAPAASTSRMSPYLRFGQISPRAMYHDLKRADGKRV-----------SRLFWHRVHRR 269

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFPIIDAAMR 341
           EF    +A +P +        +  + +W  D       + +L+ W++G TGFP +DA MR
Sbjct: 270 EFAYWQLANWPDMGTKSIRRHYDRRADWIPDPTRDAASAEILRRWREGRTGFPAVDAGMR 329

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L T GWMH   RM+ A+FL   L V W  G  +F   L+D DLA N   WQ A  +G D
Sbjct: 330 RLWTTGWMHQTERMLCATFLCDYLNVHWVHGARWFHDTLVDADLAINAMMWQNAGKSGLD 389

Query: 402 SVPYFRIFNPTIQ------GKRFDPQGTFIRHWLPELNNVPTQYI-HAP 443
               + +F+ ++        +  DP G  I   +PEL  +P  ++ H P
Sbjct: 390 Q---WDVFSGSLAPDGSKPCRAHDPLGDAIATRVPELAGLPRGHLRHRP 435


>gi|296135391|ref|YP_003642633.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
 gi|295795513|gb|ADG30303.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
          Length = 493

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 119/489 (24%), Positives = 194/489 (39%), Gaps = 61/489 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ LVW + DLR+ D+ AL+AA        +A+F+  PE        A+   F    +  
Sbjct: 3   TLALVWFKRDLRVQDHAALHAA--AQCDAALALFVMEPEWIASPECDAQHVQFAADCVAA 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           +++SL+Q G+           D  +  +    + R T LF + +        RDK    R
Sbjct: 61  LRESLTQAGLRL----LVRVGDVPQVFEGVRREMRFTHLFSHEETGPGWTYARDK----R 112

Query: 127 LQHRVICKSFDDSVLL---PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AI 182
           + H   C+  +  V+    P   ++            ++K +       D   +PVP  +
Sbjct: 113 VAH--WCR--EQGVIWQEWPQNGVVRRLRDRAGWAARWQKRM-------DAPQVPVPQGL 161

Query: 183 R-LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239
           R  + P+   + P   D    A  P    G   AL  L  F   +   Y      P  A 
Sbjct: 162 RDASKPLAAGDFPTLRDLRLPAARPTPAAGTAAALSTLHSFLDTRGAQYRRDLSSPLTAE 221

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-------SWLNELIWREFYR 292
           +G S+LS +L+ G LS RQ     ++    L    +  A         +   L W   + 
Sbjct: 222 RGCSRLSAHLAFGTLSMRQVHQATEQRIRALQASGEPSARNMAYHLRGFAGRLRWHCHFM 281

Query: 293 HLMAFYPSVCMGKPFIPWTEKI-EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             +   P +     F   ++ + E   +    +AW  G TGFP++DA MR LN  GW++ 
Sbjct: 282 QKLEDEPGIEFHN-FARASDGLREPEFNPAYFEAWCSGNTGFPMVDACMRCLNATGWINF 340

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGNDSVPYFRIFN 410
           R+R +  SF    L + WR    +   Q LD +   +   W Q    +G   +   R+++
Sbjct: 341 RMRAMLVSFAAYHLWLHWREPGLHLARQFLDFEPGIH---WSQMQMQSGTTGINTLRVYS 397

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  Q    DPQG FIR W+PE                     +  YP PIV+ + A    
Sbjct: 398 PAKQQADHDPQGEFIRQWVPEWG-------------------TSAYPPPIVNERSAVKQA 438

Query: 471 LNQYYAAKK 479
            ++ YA ++
Sbjct: 439 KDRIYAIRQ 447


>gi|47223395|emb|CAG04256.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 136

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/98 (51%), Positives = 62/98 (63%), Gaps = 1/98 (1%)

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           L  AWK+G TG P +DA MR+L T G+M NR R   ASFL KDL +DWR+G E+F S L+
Sbjct: 3   LFDAWKEGKTGVPFVDANMRELATTGFMSNRGRQNVASFLTKDLGLDWRMGAEWFESLLV 62

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           D D+ SN G W ++A  GND     R FN   QG  +D
Sbjct: 63  DHDVCSNYGNWLYSAGIGNDPREN-RKFNMIKQGLDYD 99


>gi|31322270|gb|AAP22941.1| cryptochrome 2 [Arvicanthis ansorgei]
          Length = 139

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 2/128 (1%)

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371
           +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL V W  
Sbjct: 13  QIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWES 72

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G   F   LLD D + N G W W + +      +F  + P   G+R DP G +IR +LP+
Sbjct: 73  GVRVFDELLLDADFSVNAGSWMWLSCSAFFQ-QFFHCYCPVGFGRRTDPSGDYIRRYLPK 131

Query: 432 LNNVPTQY 439
           L   P++Y
Sbjct: 132 LKGFPSRY 139


>gi|330920090|ref|XP_003298886.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1]
 gi|311327731|gb|EFQ93028.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1]
          Length = 678

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 19/178 (10%)

Query: 284 ELIWREFYR--------HLMAFY---PSVCMGKPFIPWTEKIEWNKDSH-------LLQA 325
           EL+WR++ R         + A Y        G     W +  +  +D         + + 
Sbjct: 382 ELLWRDYMRLCMRKFGHKMFALYGIQDRGAKGSQHKKWKKLHKSGEDGENPQKTMEIFER 441

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           ++ G TG  +IDA+ R+L   G+  NR R   ASFL   L +DWRIG E++   L+D D 
Sbjct: 442 FRSGRTGVGLIDASNRELFVTGYTSNRARQNVASFLSSHLNIDWRIGAEWYECFLVDYDA 501

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           ASN G WQ+ A  GND     R+FNP  Q   +D +G +I+ W+PEL ++       P
Sbjct: 502 ASNWGNWQYVAGVGNDPR-QGRVFNPVKQALDYDKRGEYIKAWVPELRDIKLTRTVGP 558


>gi|332557413|ref|ZP_08411735.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
 gi|332275125|gb|EGJ20440.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
          Length = 454

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 121/489 (24%), Positives = 182/489 (37%), Gaps = 85/489 (17%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W RNDLR+ D+ AL  A   +D +V+ + I  P +W     S RQ  F    L  ++ 
Sbjct: 4   LIWFRNDLRVADHPALARA---ADDRVLPLAIVDPAEWADPARSGRQWAFRAECLADLRA 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G            +    L   C   R+                          R
Sbjct: 61  DLAALGAPLAV----RVGEPQAVLSKLCRLHRIG-------------------------R 91

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           ++C   DD    P  + L+ ALQ +   T      ++    A     P+PA+   GP+ P
Sbjct: 92  ILC--LDD----PAFAELDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVE-PGPIPP 144

Query: 191 SNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD--IPAIQGTSQLS 246
           +   R  +   P +      P G      +L+ F + +   Y + R+  + A + +S+LS
Sbjct: 145 ARALRLAEDRCPHRQ-----PGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLS 199

Query: 247 PYLSIGVLS---------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           P+L+ G LS               P   W R    F   L    +GA   +      E  
Sbjct: 200 PHLATGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGATGARGAVCPPAAPEGA 259

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                 + +   GKP          +     L A   G TG P +DAA+R +   GW+  
Sbjct: 260 APPEDIW-TRLKGKP----------DALRLRLAALHAGETGLPFVDAALRAMAASGWLPA 308

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLR + AS  +  L +  +       + L D     ++    WA       V   R  +P
Sbjct: 309 RLRGMLASVALHHLGLSEQAAGAALAAGLTD-----HSPPIHWAQMR---RVALGRPVDP 360

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPLPIVD--HKKACH 468
                  DP G F R WLPEL  VP + + AP  W   +  L   YP P+VD    +A  
Sbjct: 361 ERLAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAG 420

Query: 469 HTLNQYYAA 477
            TL +   A
Sbjct: 421 RTLARRPTA 429


>gi|149210621|ref|XP_001522685.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15]
 gi|86196738|gb|EAQ71376.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15]
          Length = 793

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 5/125 (4%)

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
           IP  EKI+   D  L      G TG  +IDA+MR+L   G+  NR R   A+FL K L +
Sbjct: 417 IPEPEKIKVCLDRFLA-----GTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHLGI 471

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR G E++   L+D D+ SN   WQ+ A  GND     RIFNP  Q   +D +G +++ 
Sbjct: 472 DWRWGAEWYEMLLVDYDVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYVKM 531

Query: 428 WLPEL 432
           W+PEL
Sbjct: 532 WVPEL 536


>gi|289622017|emb|CBI51195.1| putative cryptochrome [Sordaria macrospora]
          Length = 530

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 103/225 (45%), Gaps = 34/225 (15%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLN--------ELIWREFY 291
           +++LS YL+ G ++ RQ  + L   E+  D   +   G     N        EL+WR++ 
Sbjct: 82  STKLSAYLAQGCVTARQIHHALVAYEDGSDTRYQGADGFGEGDNQGTETVRIELLWRDYM 141

Query: 292 RHLMAFYPSVCM------GK--PFIPWTEKIEW----------------NKDSHLLQAWK 327
           R     Y           GK   +    +K  W                 K + +L  + 
Sbjct: 142 RLCHQKYGDKLFRIEGFNGKHTDYEGEDKKHGWKTANTSIALPGQDPTPEKVADILARFN 201

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TG  +IDA+ R+L   G+  NR R   ASFL K + +DWR G E++   L+D D++S
Sbjct: 202 AGTTGMGLIDASQRELLHTGYTSNRARQNVASFLAKHMEIDWRYGAEWYEMLLVDYDVSS 261

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           N   WQ+ A  GND     RIFNP  Q   +D  G ++R W+PE+
Sbjct: 262 NWANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGVYVRAWVPEV 306


>gi|39971071|ref|XP_366926.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15]
 gi|145017156|gb|EDK01519.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15]
          Length = 770

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 5/125 (4%)

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
           IP  EKI+   D  L      G TG  +IDA+MR+L   G+  NR R   A+FL K L +
Sbjct: 417 IPEPEKIKVCLDRFLA-----GTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHLGI 471

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR G E++   L+D D+ SN   WQ+ A  GND     RIFNP  Q   +D +G +++ 
Sbjct: 472 DWRWGAEWYEMLLVDYDVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYVKM 531

Query: 428 WLPEL 432
           W+PEL
Sbjct: 532 WVPEL 536


>gi|156752078|gb|ABU93791.1| cryptochrome 2 [Carassius auratus]
          Length = 164

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 76/158 (48%), Gaps = 7/158 (4%)

Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +L+WREF+       P      G P      +I W+K+   L  W +  TGFP IDA M
Sbjct: 11  GQLLWREFFYTAATTNPRFDKMEGNPIC---VRIPWDKNPEALAKWAEAKTGFPWIDAIM 67

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  
Sbjct: 68  TQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCS 126

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
           +    +F  + P   G+R DP G FIR +LP L   P 
Sbjct: 127 SFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPA 164


>gi|80971694|gb|ABB52817.1| cryptochrome 1 [Sesamia nonagrioides]
          Length = 247

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 104/220 (47%), Gaps = 27/220 (12%)

Query: 192 NIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFC--KEKVYYYVEQRDIPAI--QGTSQ 244
           +IP   +  F    ++P+ +P GE   L  L  +   +E V  + +    P      T+ 
Sbjct: 39  DIPSLDELEFDESGLNPLKYPGGETEGLRRLNMYMARREWVCKFEKPNSSPNSLEPSTTV 98

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP----- 299
           LSPY+S G LS +  +++LKE    +  +      S L +L+WREFY    A        
Sbjct: 99  LSPYISHGCLSAKLFYHKLKEVLNSM--RHTEPPVSLLGQLMWREFYYTAGAGTENFDKM 156

Query: 300 ---SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
              SVC          +I W K+   L AW +G TG+P +DA MRQL   GW+H+  R +
Sbjct: 157 VGNSVCT---------QIPWGKNEEHLIAWAEGRTGYPFVDAIMRQLKQEGWIHHLARHM 207

Query: 357 TASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
            A FL + DL + W  G + F   LLD D + N G W W 
Sbjct: 208 VACFLTRGDLWISWEQGAKVFEDYLLDYDWSLNAGNWMWV 247


>gi|329909778|ref|ZP_08275122.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546398|gb|EGF31408.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 439

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 26/204 (12%)

Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKV-YYYVEQRD-IPAIQGTSQLSPYLSIGVLSP 256
           +P+Q+   +   G    L  L ++ + K+ + Y + R+ +  +  +S+ SP+L+ G LS 
Sbjct: 203 FPYQSA--VCAGGTSAGLAHLHQYLERKLAHTYKDTRNGLMGLDYSSKFSPWLATGALSA 260

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY----------PSVCMGKP 306
           R   N   E+F D      S  + W  EL+WR+++R L   Y              M +P
Sbjct: 261 RTI-NAAIEQFEDDFGANDSTYWLWF-ELLWRDYFRFLHLKYGRKLYRHYGLADAGMARP 318

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                       D+     W  G TG PI+DA MR+L T G++ NRLR I AS+L+ DL 
Sbjct: 319 V----------HDAAQFARWSHGLTGEPIVDAGMRELATTGYLSNRLRQIVASYLIHDLG 368

Query: 367 VDWRIGEEYFMSQLLDGDLASNNG 390
            DWR G  +F SQL+D D+ S  G
Sbjct: 369 GDWRAGAAWFESQLVDYDVYSQPG 392


>gi|146279110|ref|YP_001169269.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557351|gb|ABP71964.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 455

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 172/473 (36%), Gaps = 80/473 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW RNDLR+TD+ AL      +D   + + I  P +W     S RQ  F  A  LQ   
Sbjct: 4   LVWFRNDLRVTDHPALA----RADGHALPLVIVDPAEWADPARSGRQWAF-RAECLQ--- 55

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L +              D +  L++ C   R+ ++        +       L++R+Q  
Sbjct: 56  DLREALAALGAPLALRVGDPLTVLETLCRLHRIGRILCIEDLACHA------LDRRVQAW 109

Query: 131 VICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                 + + L P PG+                               P+P +   GP+ 
Sbjct: 110 AAAAGVEFTALAPGPGAPATLT--------------------------PLPGVE-PGPIP 142

Query: 190 PSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
           P+ + R  +   P +      P G      +L+ F + +  +Y + RD P  A +  S+L
Sbjct: 143 PARVLRIAEDRCPHRQ-----PGGRMQGRLLLQSFLERRGEHYRDGRDRPLGAERICSRL 197

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMG 304
           SP+L+ G L+  +    +           +     W   L  +R           +VC  
Sbjct: 198 SPHLATGTLARVEVREAVTARM-------EEAGPDWTRSLGAFRAALAQADVARGAVCPP 250

Query: 305 KP----------FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                       F    + I         +A + G TG P +DAA R L+  GW+  RLR
Sbjct: 251 AAPEGAAPPEDIFARMKDGIASGAARR--EALRLGETGLPFVDAAARALSATGWLPARLR 308

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  S  +  L +  R       + L D   A +     WA           R  +P   
Sbjct: 309 GLLVSAAMHHLRLCERTAGVVIAAGLTDHAPAVH-----WARVR---RAARARPVDPLGL 360

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKA 466
               DP+G F R WLPEL +VP  ++ AP  W      L   YP P+VD   A
Sbjct: 361 AAALDPEGAFTRRWLPELADVPDLFLQAPWRWEGARQLLGRRYPEPLVDPATA 413


>gi|227540558|ref|ZP_03970607.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227239640|gb|EEI89655.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 425

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 171/402 (42%), Gaps = 26/402 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS-LLQ 67
           V L+W RNDLR  DN+ L+     S   +I V+   P  + +     R++    A  +L 
Sbjct: 5   VTLIWFRNDLRFHDNEILFETVSKSPI-IIPVYCFDPRYFSKKSSGHRKTGVHRARFILD 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             + L +K         S      E +     +  V ++F++R+    E    + +E  L
Sbjct: 64  AVRELKEKFAAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISENVETAL 123

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLT 185
            + ++  K F    L     +      +   +  F+K + +   ++ +R   P P + +T
Sbjct: 124 WKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIER---ESTVRQPFPTPEVMVT 180

Query: 186 GP-VTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-------LRKFCKEKVYYYVEQRDIP 237
            P +  + IP   +  + A +        N +H+       L+K  +     + EQ D  
Sbjct: 181 HPHLEKTTIPTLEELGYTAEE--IQTANNNPIHLRGGEDEALKKVEEVLSGQFNEQLDY- 237

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
                  LSPY++ G LSP   ++++K+     L+  K        +L+WR+++R ++  
Sbjct: 238 -----MMLSPYIAAGALSPIYLYHKIKDA---KLVLNKKRTEKLTAQLLWRDYFRFMLKK 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           YP+V   K      E    + +   L+ W+ G TG   ID AM+ L+  G + + L+ I 
Sbjct: 290 YPNVFFKKNGTGKNEYSNTDTNPEDLKKWQSGQTGHVFIDKAMQFLSQTGNLPSDLKKIV 349

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           + F V++   DWR G  YF   L+D   A+  G W   A  G
Sbjct: 350 SLFFVQEYQGDWRKGASYFEDILIDYAPATTYGYWAHYAGVG 391


>gi|213647828|ref|ZP_03377881.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
          Length = 92

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 65/92 (70%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98
           +Q +L++KGI   +H+ ++F+ SIE + + C
Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVC 92


>gi|323499198|ref|ZP_08104176.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
 gi|323315831|gb|EGA68864.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
          Length = 488

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 4/126 (3%)

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D   L AWKQG TG P+IDA MR L+  G+++ R+R +  SFL   + +DWR G  +   
Sbjct: 302 DRDKLNAWKQGQTGIPLIDACMRCLHHTGYINFRMRAMLVSFLTHHMNMDWREGVTHLAQ 361

Query: 379 QLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LD +   +   +Q  A  TG +++   RI+NPT Q +  D +G FI+ WLPEL +VPT
Sbjct: 362 LFLDFEPGIHYPQFQMQAGVTGTNTI---RIYNPTKQAQEHDSEGVFIKQWLPELKHVPT 418

Query: 438 QYIHAP 443
             +  P
Sbjct: 419 PLLFEP 424


>gi|47212596|emb|CAF93038.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 662

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 29/182 (15%)

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371
           +I W+++   L  W +G TGFP IDA M QL   GW+H++ R  +A FL + DL + W  
Sbjct: 452 QIPWDQNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHQARRASACFLTRGDLWISWEC 511

Query: 372 G---------------------EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           G                      + F   LLD D + N G W W + +      +F+ + 
Sbjct: 512 GMKVGGPPWSRRRRRRLSARLLPQVFEELLLDADWSVNAGSWMWLSCSAFFQQ-FFKCYC 570

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
           P   G+R DP G +IR ++P L + P +YI+ P +  +         + ++YP P+++H 
Sbjct: 571 PVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAVQKAANCVVGVDYPRPMINHA 630

Query: 465 KA 466
           + 
Sbjct: 631 EG 632


>gi|213422521|ref|ZP_03355587.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 102

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           ++ RQ+ FI A L  +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QY
Sbjct: 1   MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQY 60

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY 155
           E NE +RD  +EK L   VIC+ FDDSV+L PG+++    +MY
Sbjct: 61  EFNERQRDAAVEKTLP-SVICEGFDDSVILAPGAVMTGNHEMY 102


>gi|313234987|emb|CBY24933.1| unnamed protein product [Oikopleura dioica]
          Length = 374

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 168/404 (41%), Gaps = 60/404 (14%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-QWRQHGISARQSHFIYA 63
           T  +VH  W R  LR+ DN+ALY A   S   V  ++I   + Q  +   SA ++ F+  
Sbjct: 4   THRTVH--WFRKGLRLHDNEALYHAVTTSQV-VFPIYILDVDWQTEKEKFSALKTRFLIE 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L  + + L + G            D+   +  +C +  +T++ + +  EI    RD+ +
Sbjct: 61  CLRDLDEGLKKCGTRLYVLT----GDATTVIKKFCKENEITQMTWMKDAEIFYRERDEEI 116

Query: 124 EKRLQHR--VICKSF-------DDSVLLPPGSILNHALQ--------MYKVYTPFRKALI 166
            K + HR  +  KSF        D V+   G  +   L         M +   P   + I
Sbjct: 117 TK-VVHRMEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTSCI 175

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
              V     +  +P I + G   P ++P            ++  GE+ AL  L+    + 
Sbjct: 176 APAVDNHESTYGIPKISVWGHQAPRSLP------------IYRGGERQALKALQAKINDP 223

Query: 227 VYYYVE---QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             + +    Q     +  T+ LS Y + G +S R  W   ++        P+S       
Sbjct: 224 TLFTLNGFNQGVKTKLPHTTYLSAYQNYGCISTRHFWKAAEK-------LPESKTIMLRG 276

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWT-----EKIEWNKDSHLLQAWKQGYTGFPIIDA 338
           ++++REF      FY +      F          +IEW K+   L AW++G TG+P IDA
Sbjct: 277 QIMYREF------FYVAASQVNNFTKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDA 330

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMSQLL 381
            MRQL T G++H+  R   ASFL    L ++W  G+E     L+
Sbjct: 331 VMRQLVTEGFIHHLNRWAVASFLTNGQLWLNWEHGQESMFYDLI 374


>gi|302918988|ref|XP_003052768.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI
           77-13-4]
 gi|256733708|gb|EEU47055.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI
           77-13-4]
          Length = 640

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 130/312 (41%), Gaps = 50/312 (16%)

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG 211
            Q+   Y  F + L+Q          P+  +    PV P +      +PF         G
Sbjct: 217 FQVPDTYEEFERRLLQ----------PIDYMLANPPVLPQDAKSA--HPFDG-------G 257

Query: 212 EQNALHILRKFCKEK-VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK--EEF 267
           E  A   LR   +   +  Y E R+ +     +++LS YL++G +S R     L   E+ 
Sbjct: 258 ESFAWERLRHLIRTGGMCTYQETRNGLLGKDYSTKLSGYLALGCISARSIHEELLKLEDG 317

Query: 268 VDLLIKPKSGAFSWLNE--------LIWREFYRHLMAFYPS---------VCMGKPFIPW 310
            D       G     NE        L+WR++ R     + +            G+    W
Sbjct: 318 TDQAYARARGFDRGENEGTKAVRFELLWRDYMRLCTKKFGAQLFRVSGFKGATGQYEKKW 377

Query: 311 ------TEKIEWNKDSH----LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 T  I+ +        ++  + +G TG   IDA+ R+L   G+  NR R   ASF
Sbjct: 378 KTADKKTAAIDQDPSPEEVGTIIDRFLEGTTGMGFIDASQRELYHTGYTSNRARQNVASF 437

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
             K L +DWR G E++   L+D D++SN   WQ+ A  GND     RIFNP  Q   +D 
Sbjct: 438 FSKHLGIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGVGNDPRGDARIFNPVKQAFDYDN 497

Query: 421 QGTFIRHWLPEL 432
            G ++R W+PE+
Sbjct: 498 NGAYVRTWVPEV 509


>gi|318041064|ref|ZP_07973020.1| DNA photolyase, FAD-binding protein [Synechococcus sp. CB0101]
          Length = 314

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 84/156 (53%), Gaps = 16/156 (10%)

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNT-IGWM--HNRLRMITASFLVKDLLVDWRIGEE 374
           +   L  AW++G TGFPI+DAA R L    GW+  + R R I ASFL     +DWR G  
Sbjct: 41  QQEELYAAWREGRTGFPIVDAAARCLQAEGGWLELNFRSRAIYASFLSNLCGIDWRFGAL 100

Query: 375 YFMSQLLDGDLASNNGGWQWAASTG---NDSVPYFRIFNPT-IQGKRFDPQGTFIRHWLP 430
           ++M  L+DGD   ++  +QWA   G   + +  + RI++P  +   R DP G FIR WLP
Sbjct: 101 HYMRHLIDGDCPIDH--YQWAMQAGVTYHGTKAWTRIYHPGQVAVDRCDPHGLFIRRWLP 158

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           EL  +    +  P +  D       YP P++D++ +
Sbjct: 159 ELRGLTNDQLGTPPAMAD-------YPAPVLDYETS 187


>gi|253995627|ref|YP_003047691.1| DNA photolyase FAD-binding [Methylotenera mobilis JLW8]
 gi|253982306|gb|ACT47164.1| DNA photolyase FAD-binding [Methylotenera mobilis JLW8]
          Length = 407

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 96/190 (50%), Gaps = 16/190 (8%)

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
           LRK        Y   R+   I G  + LSPYL  G L+  + ++ +K++F          
Sbjct: 44  LRKLHAVDAVQYGRNRNF--INGAVTHLSPYLRHGCLNLNEVFSFVKQKF-------GLQ 94

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ-AWKQGYTGFPII 336
             S L EL WR+F+R +  FY     G       E+ + N D   L  + KQ  TG P +
Sbjct: 95  GESLLMELAWRDFWRQVW-FYE----GNAIFSEMEQPKVNLDYQPLSVSVKQANTGLPCM 149

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           D  +++L   G+MHN  RM  AS++V  L VDWR   ++F + LLDGD ASN+  WQW A
Sbjct: 150 DGFIKELLDTGYMHNHARMWFASYVVHHLKVDWREAADWFEAHLLDGDFASNHLSWQWIA 209

Query: 397 STGNDSVPYF 406
           ST +    YF
Sbjct: 210 STFSSKPYYF 219


>gi|326404724|ref|YP_004284806.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
 gi|325051586|dbj|BAJ81924.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
          Length = 539

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 113/265 (42%), Gaps = 17/265 (6%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQC----WNRLK 264
           G   AL  L  F   +   Y      P       S+LSPYL+ G +S R+     W R +
Sbjct: 197 GRAAALETLGSFLASRGEDYTRAMSSPVSGEAACSRLSPYLAYGCVSIREAAQAAWRRQR 256

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
           E  V    +  +   S++  L W   +   +   P     +PF    E +    D   L 
Sbjct: 257 E--VPAASRWGAALRSFIARLHWHCHFIQKLEAEPEAEW-RPFARIYEGMRPPADPARLA 313

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           AW +G TG+P IDAAMR L   GW++ R+R +  SF   DL + W+  E   +   L  D
Sbjct: 314 AWAEGRTGYPFIDAAMRYLAAHGWINFRMRAMLMSFASHDLFLPWQ--ESGLVLARLFTD 371

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
                   Q    +G   +   R+++P  QG   DP G FIR  +PEL  V    +H P 
Sbjct: 372 YEPGIHWPQCQMQSGETGINTVRVYSPVKQGFDQDPAGRFIRLHVPELAAVAGALVHEP- 430

Query: 445 SW----LDKNDLSLNYPLPIVDHKK 465
            W     ++  L   YP  IV H++
Sbjct: 431 -WRLDAAERARLCPEYPARIVIHEE 454


>gi|255038083|ref|YP_003088704.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
           18053]
 gi|254950839|gb|ACT95539.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
           18053]
          Length = 396

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 184/428 (42%), Gaps = 74/428 (17%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYASL 65
           + W RNDLR+ DN+AL AA  ++D ++I V++  P Q+ +  +  R++      F+  S+
Sbjct: 6   IYWFRNDLRLKDNQALSAAVGSAD-EIIPVYVFDPRQFEKTKLGFRRTGALRARFLIESV 64

Query: 66  LQVQKSLSQKG------------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            ++++++ QKG            IV Q  +  N D                 ++ +++  
Sbjct: 65  AELRENIRQKGGDLIIRTGAPEAIVAQLAEDYNAD----------------YVYTSKEIA 108

Query: 114 INEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
             E R +  L K L+   V  K F    ++    +     ++   +  F + L  +L   
Sbjct: 109 PQETRIESSLSKNLKTANVDIKLFWMDTMINATDLPFPVSKLPSGFAEFERLLSNDLKIK 168

Query: 173 DLRSLPVPA-IRLTGPVTPSNIPRFFDYPFQAIDP-------MFPI--GEQNALHILRKF 222
           D    P PA I L   V    IP     P   IDP         P+  GE  AL +L+++
Sbjct: 169 D--QFPTPASITLPADVEAGAIPGL---PELGIDPNEIPAGTTGPLAGGEARALAVLKEY 223

Query: 223 CKEKVYYYVEQRDI--PAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            +E V     ++DI  P+ +    ++LS +LS+G +S    +  +K      +++     
Sbjct: 224 VEEYV-----KKDIAYPSAEPLTDTRLSDWLSLGCVSASYIYRSVKTAQSHAVVEDPI-- 276

Query: 279 FSWLNELIWREFYR-HLMAFYPSVCMGKPFIPWTEK----IEWNKDSHLLQAWKQGYTGF 333
              +  L+ REF    L+ F P +     F P   K      W  D+   + W  G TG 
Sbjct: 277 ---ITNLLRREFLHWTLLRFGPRM-----FKPSGVKHHFNRRWKNDNAAFEKWINGQTGD 328

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
             I+  +R+L   G++    R   A +LV DL ++W  G  YF S L+D + + N G W 
Sbjct: 329 QSINDIIRRLTATGFITAAERESAARYLVDDLDINWTWGAMYFESLLMDYEASVNWGRWN 388

Query: 394 WAASTGND 401
             A  G D
Sbjct: 389 HIAGVGED 396


>gi|193795850|gb|ACF21978.1| CPD1 [Cercospora zeae-maydis]
          Length = 72

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 49/72 (68%)

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           E+ WREFY+H++A +P VCM KPF      +EW  D  L + W  G TGFPI+DAAMRQ 
Sbjct: 1   EVAWREFYKHVLAHWPYVCMSKPFKYEYSDVEWEYDDALFEKWTSGLTGFPIVDAAMRQC 60

Query: 344 NTIGWMHNRLRM 355
             + WMHNRLRM
Sbjct: 61  KEMSWMHNRLRM 72


>gi|115727477|ref|XP_783613.2| PREDICTED: similar to cryptochrome dash [Strongylocentrotus
           purpuratus]
 gi|115935378|ref|XP_001186661.1| PREDICTED: similar to cryptochrome dash [Strongylocentrotus
           purpuratus]
          Length = 463

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 118/251 (47%), Gaps = 30/251 (11%)

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY----PFQA 203
             H  ++  VYT FRK +          ++P P   L   V   +IP F  +    P   
Sbjct: 197 FRHLAEVPNVYTEFRKKVENRSHVRPPINMPKPLKGLPQGVEEGDIPVFSSFGLKDPGSD 256

Query: 204 IDPMFPI--GEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQ 258
               FP   GE   L  +  +    + +  Y E R+ +   + +++ + +L+ G +SPRQ
Sbjct: 257 SRTAFPFQGGETTGLARIEDYFWKSDCIAKYKETRNGLIGSEYSTKFAAWLAHGCVSPRQ 316

Query: 259 CWNRLKEEFVDLLIKPKSGAFSW-LNELIWREFYRHLM------AFYPSVCMG--KPFIP 309
               +K    +   + ++ +  W + ELIWR++++ +        FY S  +G  KP   
Sbjct: 317 IHAEVKRYEKE---RTENQSTYWVIFELIWRDYFKFVALKFGDKMFYLSGLLGVHKP--- 370

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                 WNK+     AW +G TG P +DA +R++   G+M NR R   ASFL KDL++DW
Sbjct: 371 ------WNKNKQWFDAWCKGQTGVPFVDANIREMAATGFMSNRGRQNVASFLTKDLVLDW 424

Query: 370 RIGEEYFMSQL 380
           R+G E+F   L
Sbjct: 425 RLGAEWFEQML 435


>gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis]
 gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis]
          Length = 463

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 91/196 (46%), Gaps = 19/196 (9%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLK 264
           GE  AL  L +  + K +  +     P +   S       +SPYL  G LSPR  + RL 
Sbjct: 231 GETEALKRLDRHLERKAW--IASFGKPKVTSDSLMASPSGVSPYLRFGCLSPRLFYYRL- 287

Query: 265 EEFVDLLIKPKSGA--FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
              +DL  K K G    S   +L+WREF+  +    P+    +   P    I+W  D  +
Sbjct: 288 ---MDLYRKVKGGPPPTSLYGQLLWREFFFVVSTNNPNFDKMES-NPICLYIKWRTDKQV 343

Query: 323 ---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEEYFMS 378
              LQ W    TGFP IDA M QL   GW+H   R+  ASFL +  L + W  G + F  
Sbjct: 344 ASDLQKWTDAQTGFPWIDAIMSQLKQEGWIHYLARVAVASFLTRGCLWISWEAGMKVFAE 403

Query: 379 QLLDGDLASNNGGWQW 394
            LLD D +SN G W W
Sbjct: 404 HLLDADWSSNAGNWMW 419


>gi|126735513|ref|ZP_01751258.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
 gi|126714700|gb|EBA11566.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
          Length = 505

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 124/287 (43%), Gaps = 28/287 (9%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--SQLSPYLSIGVLSPRQCWNRL--KEE 266
           G   A   L  F  ++   Y +    P    T  S+LSP+L  G +S R+ +     ++ 
Sbjct: 199 GLAAARATLDSFLHDRGAPYQKAMSSPVSGETACSRLSPHLMAGSISMREVYQATLARQS 258

Query: 267 FVDLLIKPKSGAF-----SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK--- 318
            V  L K   G +     S++  L W   +   +   P +     ++P     E  +   
Sbjct: 259 AVAALPKADRGTWPSAMKSFVGRLHWHCHFMQKLEAEPEI----EWLPMARIYEGLRPTP 314

Query: 319 -DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
            DS LL A+++G TG+P +DA MR L   GW++ R+R +  SF   +L + W+       
Sbjct: 315 TDSSLLSAFEEGRTGYPFVDACMRYLRATGWINFRMRAMLMSFASYNLWLPWQQSGTVLA 374

Query: 378 SQLLDGDLASNNGGWQWAAS---TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
               D        G  W  S   +G   +   RI++P  QG   DP G F R W+PEL +
Sbjct: 375 RLFTD-----YEPGIHWPQSQMQSGETGINAVRIYSPVKQGYDQDPTGVFTRQWVPELAH 429

Query: 435 VPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +  + +  P + LD   L   YP  IVDH++       + Y  ++ +
Sbjct: 430 LTGKALQDPWT-LDA--LPKGYPARIVDHQQTAREAKQRIYGLRRTA 473


>gi|255027720|ref|ZP_05299706.1| hypothetical protein LmonocytFSL_17612 [Listeria monocytogenes FSL
           J2-003]
          Length = 282

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 131/300 (43%), Gaps = 36/300 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR++DNKALY AC   D  ++ +F   P Q+   G  + Q+ F  AS+   ++
Sbjct: 4   VMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFNT-GSPSHQAFF--ASVAHFKQ 58

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT------KLFYNRQYEINEVRRDKLLE 124
            + +  ++        F + +E     CL+Q         K+++NR        RD+  +
Sbjct: 59  EVDKTALL-----QIMFGEPVE-----CLKQLKETLPSWDKVYFNRDETGYGAERDEAAK 108

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
                + I  ++F DS L     +     + YK++TP+ K       + +++  P     
Sbjct: 109 TFFDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKW-----REEIKETPFKVTL 163

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               +   N+   ++  F  +    PI   GE+ A   L  F K  V  Y + RD P + 
Sbjct: 164 KADNIRKENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPELD 223

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS LS YL  G +S R  W  L+E       +   G   +  EL WR+FY  +   +P+
Sbjct: 224 KTSHLSRYLRTGEISVRTIWQALQEN------EATEGRAIFEKELCWRDFYNMIYVSFPN 277


>gi|302417194|ref|XP_003006428.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
 gi|261354030|gb|EEY16458.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
          Length = 626

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 120/271 (44%), Gaps = 32/271 (11%)

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPAI-- 239
           + GP     I    +  F +       GE  AL  L++  K+  Y   + + +  PA   
Sbjct: 215 IAGPNGDFGIETMEELGFPSATTPHRGGESRALETLKEVMKDVKYAATFRKPQTSPAAFE 274

Query: 240 -QGTSQLSPYLSIGVLSPRQC-WNRLKEEFVDLLIKPKSGA-FSWLNELIWREFY---RH 293
            Q T+ LSP++  G LS R+  W  +  + V    K  SG   S   +L++R+ Y   + 
Sbjct: 275 PQSTTLLSPHMHFGSLSVREFYWQAV--DAVKAFGKGASGPPESLTGQLLFRDMYFAAQA 332

Query: 294 LMAFYPSVCMGKP---FIPWTEKIEWNKDSHLLQA---------------WKQGYTGFPI 335
            + +      G     FIPW    + N ++ L+                 WK G TGFP 
Sbjct: 333 ALGYKFEQTRGNAYCRFIPWHLPSKVNTETGLITGQYHVDSEEADLWFRRWKAGQTGFPW 392

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA MRQL   GW+H+  R   A FL +    +DW  G E F   L+D + A N G WQW
Sbjct: 393 IDALMRQLAEEGWIHHLGRHSVACFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQW 452

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +     S  YFR ++P   G+++D +G  I
Sbjct: 453 LSCAAFFSQ-YFRCYSPVSFGQKWDKEGLLI 482


>gi|75907163|ref|YP_321459.1| deoxyribodipyrimidine photo-lyase family protein [Anabaena
           variabilis ATCC 29413]
 gi|75700888|gb|ABA20564.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Anabaena variabilis ATCC 29413]
          Length = 278

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 20/171 (11%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LSPY+  GVLS R+       ++V   +K    A   +NEL WR++++ L      V 
Sbjct: 63  TRLSPYIRYGVLSLREI-----RDYVLDNVKHSDDATKLINELGWRDYWQRLY-----VK 112

Query: 303 MGKPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +G     W ++ E+          S L    K+G TG   ID+  R+L   G++HN +RM
Sbjct: 113 LGNGI--WEDQEEYKTGYTPAEYASDLATDIKEGKTGLVCIDSFSRELRETGYLHNHMRM 170

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
             A+++V    + W+ G ++F+  LLDGD ASNN  WQW AST +   PYF
Sbjct: 171 WLAAYIVHWRRIRWQEGAKWFLEHLLDGDPASNNMSWQWVASTFSQK-PYF 220


>gi|148261329|ref|YP_001235456.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5]
 gi|146403010|gb|ABQ31537.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Acidiphilium cryptum JF-5]
          Length = 389

 Score = 91.7 bits (226), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 111/265 (41%), Gaps = 17/265 (6%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQC----WNRLK 264
           G   AL  L  F   +   Y      P       S+LSPY + G +S R+     W R +
Sbjct: 47  GRAAALATLGSFLATRGEDYTRAMSSPVSGEAACSRLSPYFAYGCVSIREAAQAAWRRQR 106

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
           E  V    +  +   S++  L W   +   +   P     +PF    E +    D   L 
Sbjct: 107 E--VPAASRWGAALRSFIARLHWHCHFIQKLEAEPEAEW-RPFARIYEGMRPPADPARLA 163

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           AW +G TG+P IDAAMR L   GW++ R+R +  SF   DL + W+  E   +   L  D
Sbjct: 164 AWAEGRTGYPFIDAAMRYLAAHGWINFRMRAMLMSFASHDLFLPWQ--ESGLVLARLFTD 221

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
                   Q    +G   +   R+++P  QG   DP G  IR  +PEL  V    +H P 
Sbjct: 222 YEPGIHWPQCQMQSGETGINTVRVYSPVKQGFDQDPAGRLIRLHVPELAAVAGALVHEP- 280

Query: 445 SW----LDKNDLSLNYPLPIVDHKK 465
            W     ++  L   YP  IV H++
Sbjct: 281 -WRLDAAERARLCPEYPARIVIHEE 304


>gi|302847741|ref|XP_002955404.1| cryptochrome [Volvox carteri f. nagariensis]
 gi|300259246|gb|EFJ43475.1| cryptochrome [Volvox carteri f. nagariensis]
          Length = 738

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
           + W  D      W QG TG P +DA MR+L   GWM NR R   AS L KDL VDWR G 
Sbjct: 592 VSWRNDMETFTRWAQGRTGLPFVDANMRELAVTGWMSNRGRQNVASLLTKDLGVDWRWGA 651

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           E F S L+D D+A N   W + A  GND  P  R F    Q
Sbjct: 652 ELFESLLVDCDVAVNYCNWNYFAGIGND--PRNRHFKTVTQ 690


>gi|222525279|ref|YP_002569750.1| putative deoxyribodipyrimidine photolyase [Chloroflexus sp.
           Y-400-fl]
 gi|222449158|gb|ACM53424.1| putative deoxyribodipyrimidine photolyase [Chloroflexus sp.
           Y-400-fl]
          Length = 271

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 93/185 (50%), Gaps = 10/185 (5%)

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
            V++Y   R+    +G S LSPYL  G+LS  +  + +   F    I P +  F  +NEL
Sbjct: 49  NVHHYARTRNDVVQRGVSMLSPYLRHGMLSLAEVRDSILGRFG---ITPDTEKF--VNEL 103

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR F++ + A      +     P   K    +   L        TG   ID ++R+L T
Sbjct: 104 AWRAFWQLVYAHLGDR-IHHDIEPAKHKARVPR-RRLPPDVTAATTGLVCIDESLRELYT 161

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           +G+MHN  RM  A++L+  L VDWR G + F   LLDGD ASN+  WQW  ST +   PY
Sbjct: 162 VGYMHNHARMWVAAYLIHWLGVDWREGADLFYRHLLDGDPASNSLSWQWVNSTFSHK-PY 220

Query: 406 FRIFN 410
             IFN
Sbjct: 221 --IFN 223


>gi|465501|sp|Q05380|YAT1_SYNP1 RecName: Full=Uncharacterized 31.6 kDa protein in atpI 5'region;
           AltName: Full=URF1
 gi|480494|pir||S36967 hypothetical protein 1 (uncI 5' region) - Synechococcus sp.  (PCC
           6716)
 gi|49221|emb|CAA49877.1| unnamed protein product [Synechococcus sp.]
          Length = 284

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 122/298 (40%), Gaps = 34/298 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL W R DLR+ DN  LYAA  ++   V+ VF   P   +   ++A +  ++   L  +
Sbjct: 5   LHLFWHRRDLRLADNLGLYAARQHTP-TVVGVFCFDPALLQGQDVAAVRVAYLLGCLQAL 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++  Q+G      Q     D  + +       + T + ++   E     RD+++   L 
Sbjct: 64  KEAYQQRGGCLLMVQ----GDPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATLN 119

Query: 129 HRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRK--------------ALIQNLVQAD 173
              I      D +L PP ++     Q Y VYTPF +                   L   +
Sbjct: 120 DLGIAVHRQWDQLLHPPSAVQTQQGQPYTVYTPFWRNWSALPKAAPVPPPPDFAPLEATE 179

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           + S+P+P+    G          FD+  + I      GE  A   L  F +  +Y Y EQ
Sbjct: 180 IASIPLPSTHDLG----------FDWSGELI---LAPGEAAAAQQLAHFSQHAIYEYGEQ 226

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREF 290
           R+ P   GT+ LSP L  GV+  R  W   +         + ++   +W  EL WREF
Sbjct: 227 RNYPGRPGTALLSPALKFGVIGIRTVWAASEAALEHARSDEARASIRTWQQELAWREF 284


>gi|219128726|ref|XP_002184557.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404007|gb|EEC43956.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 524

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 22/191 (11%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-NELIWREFYRHLMAFYPS 300
           +S+LS +L++G++SPR          V  +         WL + L  R+F+ +L     S
Sbjct: 345 SSRLSTFLALGIISPRT---------VHAITAEGGEGARWLCSHLTMRDFFIYLCFASGS 395

Query: 301 ---------VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                    V   +  IPW       K     + W QG+TG P+IDA MR+L   G+  N
Sbjct: 396 RLYQQEGLPVNAKRKNIPWYSPAAPQK-YDCWRRWAQGFTGLPLIDAGMRELCQTGYCSN 454

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R   AS L +DL +DWR G E     L D  +A+N G W + +  G D  P  R F  
Sbjct: 455 RVRQNIASVLCRDLQIDWRAGAEVLQFLLRDHCVAANWGNWLYFSGVGPD--PKSRHFRS 512

Query: 412 TIQGKRFDPQG 422
             Q  R+DP+ 
Sbjct: 513 VSQALRYDPEA 523


>gi|213022877|ref|ZP_03337324.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 84

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 60/84 (71%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67 QVQKSLSQKGIVFQYHQCSNFDDS 90
           +Q +L++KGI   +H+ ++F+ S
Sbjct: 61 ALQTALAEKGIPLLFHEVADFNAS 84


>gi|311697144|gb|ADQ00016.1| deoxyribodipyrimidine photolyase [marine bacterium HP15]
          Length = 505

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 198/497 (39%), Gaps = 73/497 (14%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + +  L+ +LR+ D+   Y A         V+ ++I  P   RQ  I  +  +FI+ +L 
Sbjct: 1   MQVFLLKRNLRLQDSDPFYEAMRGYRRFGPVLPLYIHEPSIIRQPDICLQHQNFIFETLD 60

Query: 67  QVQKSLSQKG-----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           ++ + +   G     +V +     +    I  +   C  Q  T+     QYE     RDK
Sbjct: 61  ELSQEIRSIGGKLLELVGEAVPTLDVIHQIAPIARICTHQETTQ---GVQYE-----RDK 112

Query: 122 LLEK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            + K   ++ V    F    ++  G   +   Q +  Y  F  ++ + L       L V 
Sbjct: 113 AVRKWCSRNSVKLVEFQQDGVVRAG-CRDQKKQTFPEY--FADSVNRELKDPGGIDLGVR 169

Query: 181 AIRLTGPVTPS-NIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCK-EKVYYYVEQRDI 236
                 P  P   IPR   +D PF+        G   A  + + F     +  Y  +   
Sbjct: 170 FASTPLPSAPRVTIPRAQGYDRPFRQRG-----GRSEAEKLFKDFFSVGSINSYPFKLSS 224

Query: 237 P--AIQGTSQLSPYLSIGVLSPRQCWNRLKE------EFVDLLI--KPKSGAFSWLNELI 286
           P  A +G S++S YLS G++S R     + +       ++D     K +  A  +L+ L+
Sbjct: 225 PNTAWEGCSRISAYLSYGIVSDRAVMKAIDDVVSSGHSYMDAAAFEKLQGRARFYLDRLM 284

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR  Y  +    P++        +      +++  L +AW+ G TGFP IDA +R L   
Sbjct: 285 WRRNYLQMFEDDPTLEHRHALSQFDGVRISDREDPLFKAWQSGRTGFPFIDACVRCLKET 344

Query: 347 GWMHNRLRMITASFLVKDL--------------LVDWRIGEEYFMSQLLDGDLASNNGGW 392
           GW++ R R    SF   +L               +D+  G  + + Q++ G  +  NG  
Sbjct: 345 GWLNMRGRAAITSFATMNLWHDSLNVAAFLAGEFLDYMPGIHWPIIQVVSGTASPQNG-- 402

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-----APH-SW 446
                          ++ P  Q    D  G FIR ++PEL+++   +IH       H S 
Sbjct: 403 -------------IMVYCPMKQALDHDKDGVFIRKYVPELSDLQAPHIHDLSRTTNHLSD 449

Query: 447 LDKNDLSLNYPLPIVDH 463
           L +    L YP PIVDH
Sbjct: 450 LARRSGFLPYPAPIVDH 466


>gi|282901135|ref|ZP_06309066.1| deoxyribodipyrimidine photolyase-like protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193967|gb|EFA68933.1| deoxyribodipyrimidine photolyase-like protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 264

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 106/205 (51%), Gaps = 24/205 (11%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           P G + A+  L K        Y + R+       ++LSPY+  GVLS R+    ++E  +
Sbjct: 33  PGGRKAAVEQLEKV---NAVLYAKTRNY-LTGAVTRLSPYIRHGVLSLRE----VREYIL 84

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------- 321
           + +   + G+   +NEL WR++++ L      + +GK    W  + E+    H       
Sbjct: 85  NTVENSEDGS-KLINELGWRDYWQRLY-----MKLGKGI--WENQEEYKTGYHRGDYSHT 136

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           L +  ++G TG   ID+  ++L   G++HN +RM  AS+++    + W+ G ++F+  LL
Sbjct: 137 LPEDIREGKTGMVCIDSFSQELRVTGYLHNHIRMWLASYIIHWRKIQWQAGAKWFLQHLL 196

Query: 382 DGDLASNNGGWQWAASTGNDSVPYF 406
           DGD ASNN  WQW AST +   PYF
Sbjct: 197 DGDPASNNMSWQWVASTFSHK-PYF 220


>gi|254468896|ref|ZP_05082302.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
 gi|207087706|gb|EDZ64989.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
          Length = 477

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 195/467 (41%), Gaps = 53/467 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ DLR+ D++ LY A    +   I ++I  P          R   FI  SL  +
Sbjct: 5   INIVWLKRDLRLQDHEPLYRA-QEENIPFILLYIYEPSLILDPHYDKRHWRFIQESLEDI 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
           Q  L++     Q      + +S++  +    +  +  +F + +  +N    RDK +    
Sbjct: 64  QLELAKN----QNKLSIAYGESVDIFNELSNRYDIQYVFSHEETGLNTTFERDKNVANFF 119

Query: 128 QHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           + + I   +S  + V+          LQ  K +    KA  + +    ++  P     + 
Sbjct: 120 KRQNITWIESQSNGVI--------RGLQDRKTWD---KAWARFMRDKTIKINPQKLNIID 168

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQ-NALHILRKF--CKEKVYYYVEQRDIPAIQGT 242
                 NIP F +      D  F  G    A   L  F   + + YY    +   +    
Sbjct: 169 IDFGEINIPSFEE------DSNFQKGGMVEAQTTLEDFFSTRGQDYYKFISKPHKSRSSC 222

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S++S Y++ G +S RQ + ++ E +  +  +    A S  + + W   + H +  + S C
Sbjct: 223 SRMSAYIAYGNISIRQIYQKILENWNRVGWRRSMAALS--SRIHW---HCHFIQKFESEC 277

Query: 303 --------MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                    G    P+  + E + D     +W  G TGFP+IDA+MR L   G+++ R R
Sbjct: 278 RIENETINKGYQNFPYLVEDEEHAD---FTSWLNGMTGFPLIDASMRALRYSGYINFRSR 334

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF    L + W++  +      LD +   +    Q  A  G   +   RI+NP  Q
Sbjct: 335 AMVVSFACHYLRIHWKLVAKALARLFLDFEPGIHYPQIQMQA--GVTGINTIRIYNPKKQ 392

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDL---SLNYP 457
               DP+  FI+ W+PELN+   +Y I+ P   L  NDL     NYP
Sbjct: 393 AMDHDPEAIFIKTWIPELNSHQPEYIINLP---LQSNDLFSNESNYP 436


>gi|28625001|emb|CAD24679.1| photolyase related protein [Aphrocallistes vastus]
          Length = 563

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 142/300 (47%), Gaps = 24/300 (8%)

Query: 183 RLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           RL  P+ PS IP+    F +     ++ +F  GE+     L ++ + ++       D   
Sbjct: 232 RLDSPL-PSEIPKLNALFTEEEIAKLNFIFQGGERRTEDYLNEYREARLRDVSGDEDASP 290

Query: 239 IQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL--M 295
           I   +  +SP+L  G ++PR  +N L +   D     +      L  ++ R+F   +  +
Sbjct: 291 IAAKAMGISPHLRFGCITPRHLFNFLVKTIKDANYS-RIKINKVLAGIMARDFALQVSQL 349

Query: 296 AFYPS--VCMGKPFIPWTEKIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
              P   + + K  +P    I W+K+++ +++      TGFP  DAA+ QL T G++ N 
Sbjct: 350 QTIPERIISLNKICLP----IPWDKNNNEIVEKLTDAQTGFPFFDAAITQLKTEGYVINE 405

Query: 353 LRMITASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           +    A+F+   LL V W  G+ +F   L+  DLA +   W  A+ +   +       +P
Sbjct: 406 VSEALATFVTNSLLWVSWEEGQNFFSQHLICFDLAMSTHSWLEASGSTMVTGRQKSYQDP 465

Query: 412 TI-QGKRFDPQGTFIRHWLPELNNVPTQYIHAP-HSWLDKND-----LSLNYPLPIVDHK 464
            +   K+ DP G +I+ +LP+  N P ++IH P ++ L+        + ++YP P+ +++
Sbjct: 466 LLFVSKKLDPNGEYIKRYLPKFINFPIEFIHKPGNASLEAQQAANCVIDIDYPKPLFEYE 525


>gi|260220871|emb|CBA28870.1| hypothetical protein Csp_A09300 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 529

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 107/238 (44%), Gaps = 7/238 (2%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKE--- 265
           G   A  +L+ F  ++   Y      P  A +  S+LSPYL++G LS R+    ++E   
Sbjct: 209 GRARAEQVLQSFLTDRSARYRGGISSPLSASEACSRLSPYLALGCLSVREVVQAVQEVQG 268

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
              +   + ++G  S+ + L W   +   +   P +        +    E   +   L+ 
Sbjct: 269 ARGEGRKRHQAGLRSFTSRLHWHCHFIQKLESEPDIEFRNMHRGYDGLREAEHNPEHLKV 328

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
              G TG+P++DA +  L   GW++ R+R +  S     L + WR   E+   + LD + 
Sbjct: 329 LMAGRTGWPLVDACIAMLRETGWVNFRMRAMIVSIAAYPLWLHWRPVGEWLAREFLDYEP 388

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
             +    Q  + T   ++P  RI+NP  Q +  DP G F+R WLP +  VP  ++  P
Sbjct: 389 GIHWSQLQMQSGTTGINIP--RIYNPIKQARDQDPDGQFVRRWLPAMRKVPDAWLFEP 444


>gi|186686489|ref|YP_001869685.1| deoxyribodipyrimidine photolyase-like protein [Nostoc punctiforme
           PCC 73102]
 gi|186468941|gb|ACC84742.1| deoxyribodipyrimidine photolyase-like protein [Nostoc punctiforme
           PCC 73102]
          Length = 295

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 20/171 (11%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LSPY+  GVLS R+       ++V   ++ K+ A   +NEL WR++++ L      V 
Sbjct: 67  TRLSPYIRYGVLSLREI-----RDYVLDQVQQKNDATKLINELGWRDYWQRLY-----VK 116

Query: 303 MGKPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +G     W ++ E+            L Q  +QG TG   ID+    L   G++HN  RM
Sbjct: 117 LGDEI--WKDQEEYKTGYTVAEYLPELPQDIRQGTTGRVCIDSFSHDLKETGYLHNHARM 174

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
             A+++V    + W+ G ++F+  LLDGD ASNN  WQW AST +   PYF
Sbjct: 175 WLAAYIVHWRRIGWQAGAKWFLEHLLDGDPASNNMSWQWVASTFSQK-PYF 224


>gi|167009708|ref|ZP_02274639.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367213|ref|ZP_04983243.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica 257]
 gi|295313747|ref|ZP_06804324.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|134253033|gb|EBA52127.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica 257]
          Length = 164

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 2/125 (1%)

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           +    +AWK G TG+P+IDA MR L    W++ R+R +  SF    L +DWR+   Y   
Sbjct: 42  NQQCFEAWKTGNTGYPMIDACMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAG 101

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
              D +   +    Q    +G   +   RI+NP  Q     P G FIR WLPEL NV  +
Sbjct: 102 LFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNE 159

Query: 439 YIHAP 443
            IH P
Sbjct: 160 NIHTP 164


>gi|80971696|gb|ABB52818.1| cryptochrome 2 [Sesamia nonagrioides]
          Length = 264

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 14/160 (8%)

Query: 245 LSPYLSIGVLSPRQ-CWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           LSP L  G LS R  CW+   L  E     +  +S +     +LIWRE++  +    P+ 
Sbjct: 110 LSPALRFGCLSVRSFCWSVQDLFREVHQGRLATQSASHFITGQLIWREYFYTMSVNNPNY 169

Query: 302 CM--GKPF---IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
               G P    IPW      N +   LQ W +G TGFP +DAAMRQL T GW+H+  R  
Sbjct: 170 GQMSGNPICLDIPWK-----NPEGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHVARNT 224

Query: 357 TASFLVKDLL-VDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
            A FL +  L + W  G  +F+  LLD D +   G W W 
Sbjct: 225 VAFFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWV 264


>gi|17230458|ref|NP_487006.1| hypothetical protein alr2966 [Nostoc sp. PCC 7120]
 gi|17132060|dbj|BAB74665.1| alr2966 [Nostoc sp. PCC 7120]
          Length = 278

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 20/171 (11%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LSPY+  GVLS  +  N     +V   +K    A   +NEL WR++++ L      + 
Sbjct: 63  TRLSPYIRYGVLSLGEIRN-----YVLDNVKHPDDAKKLINELGWRDYWQRLY-----IK 112

Query: 303 MGKPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +G     W ++ E+          S L    K+G TG   ID+  R+L   G++HN +RM
Sbjct: 113 LGNGI--WEDQEEYKTGYTPAEYASDLAADIKEGKTGLVCIDSFSRELQETGYLHNHMRM 170

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
             A+++V    + W+ G ++F+  LLDGD ASNN  WQW AST +   PYF
Sbjct: 171 WLAAYIVHWRRIRWQEGAKWFLEHLLDGDPASNNMSWQWVASTFSQK-PYF 220


>gi|290953049|ref|ZP_06557670.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 150

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 62/125 (49%), Gaps = 2/125 (1%)

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           +    +AWK G TG+P+IDA MR L    W++ R+R +  SF    L +DWR+   Y   
Sbjct: 28  NQQCFEAWKTGNTGYPMIDACMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAG 87

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
              D +   +    Q    +G   +   RI+NP  Q     P G FIR WLPEL NV  +
Sbjct: 88  LFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNE 145

Query: 439 YIHAP 443
            IH P
Sbjct: 146 NIHTP 150


>gi|237654597|ref|YP_002890911.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
 gi|237625844|gb|ACR02534.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
          Length = 526

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 122/286 (42%), Gaps = 24/286 (8%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           G   AL +L  F   +   Y      P  A    S+LSPYL+ G LS R+     +    
Sbjct: 210 GRHAALEVLHDFLDARSGQYRGGISSPLKAPTACSRLSPYLAWGCLSLRELVQATRARVA 269

Query: 269 DL--LIKPKSGAFSWLNELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLL 323
            L    + ++G  ++L+ L W   +   +   P++    + + +    E  EWN+ +H  
Sbjct: 270 ALPEGDRRRAGLAAFLSRLYWHCHFIQKLESEPTLEFRNLHRGYDGLREP-EWNQ-AHF- 326

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            A   G TG+P++DA +  L   GW++ R+R +  S     L + WR    +     LD 
Sbjct: 327 DALVGGRTGWPLVDACVAMLRATGWLNFRMRAMLVSVAAYPLWLHWREVGLWLARAFLD- 385

Query: 384 DLASNNGGWQWA---ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
                  G  W+     +G   +   R++NP  Q +  DPQG F+R WLP L  VP  ++
Sbjct: 386 ----YEPGIHWSQLQMQSGTTGINTTRVYNPIKQARDHDPQGVFVRRWLPALRRVPDTWL 441

Query: 441 HAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             P    +         +  +  LP+VD + A      + +A + Q
Sbjct: 442 FEPWRMPESVQARCGVRVGEDIALPVVDLESATRAAKTRIHALRAQ 487


>gi|261335266|emb|CBH18260.1| DNA photolyase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 848

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 102/240 (42%), Gaps = 28/240 (11%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           Q  S+LSPYLS G LSPR+ +  L+    E   D  ++ +   +      + R  Y H M
Sbjct: 526 QRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNFVQQQ---YREALLRLSRRDYWHWM 582

Query: 296 AFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                  +   + P  E  +    W  D  ++Q W  G TG P  DAAMR+L   G++ +
Sbjct: 583 GLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGLTGIPFADAAMRELTLTGFVAD 642

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
             R      L +    DWR+G E+     +D D     G   + +    D       F  
Sbjct: 643 EGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYGNCAYYSELVRDD------FGE 696

Query: 412 TIQ-----GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           T++         D  G +++ WLP+L+ +P  YIH PH   ++        L  NYP P+
Sbjct: 697 TVRNIHWLAHHHDQTGIYVKKWLPQLSKIPPVYIHRPHVLTERMQAMHGVQLGKNYPYPL 756


>gi|219848494|ref|YP_002462927.1| DNA photolyase FAD-binding [Chloroflexus aggregans DSM 9485]
 gi|219542753|gb|ACL24491.1| DNA photolyase FAD-binding [Chloroflexus aggregans DSM 9485]
          Length = 271

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 104/225 (46%), Gaps = 28/225 (12%)

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           GP TPS        P +        G   AL  LR F    V  Y   R+  A +  SQL
Sbjct: 27  GPATPS--------PIRG-------GRWAALRRLRAF---DVRNYARTRNDVARRTVSQL 68

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  GVL+  +  + +   F      P +  F  +NEL WR F++ + A +    +  
Sbjct: 69  SPYLRHGVLTLAEVRDSILNRFGH---TPDTEKF--VNELAWRAFWQIVYA-HLGERIHH 122

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              P   +    + S L        TG   ID ++++L T G+MHN  RM  A++L   L
Sbjct: 123 DLEPAKHRSRVARRS-LPPEVLTATTGLVCIDESLQELYTTGYMHNHARMWVAAYLQHWL 181

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
            VDWR G + F   LLDGD ASN+  WQW  ST +   PY  IFN
Sbjct: 182 GVDWREGADLFYRHLLDGDPASNSLSWQWVGSTFSHK-PY--IFN 223


>gi|74025462|ref|XP_829297.1| DNA photolyase [Trypanosoma brucei TREU927]
 gi|70834683|gb|EAN80185.1| DNA photolyase, putative [Trypanosoma brucei]
          Length = 848

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 102/240 (42%), Gaps = 28/240 (11%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLK----EEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           Q  S+LSPYLS G LSPR+ +  L+    E   D  ++ +   +      + R  Y H M
Sbjct: 526 QRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNFVQQQ---YREALLRLSRRDYWHWM 582

Query: 296 AFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                  +   + P  E  +    W  D  ++Q W  G TG P  DAAMR+L   G++ +
Sbjct: 583 GLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGLTGIPFADAAMRELTLTGFVAD 642

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
             R      L +    DWR+G E+     +D D     G   + +    D       F  
Sbjct: 643 EGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYGNCAYYSELVRDD------FGE 696

Query: 412 TIQ-----GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           T++         D  G +++ WLP+L+ +P  YIH PH   ++        L  NYP P+
Sbjct: 697 TVRNIHWLAHHHDQTGIYVKKWLPQLSKIPPVYIHRPHVLTERMQAMHGVQLGKNYPYPL 756


>gi|282896459|ref|ZP_06304479.1| deoxyribodipyrimidine photolyase-like protein [Raphidiopsis brookii
           D9]
 gi|281198565|gb|EFA73446.1| deoxyribodipyrimidine photolyase-like protein [Raphidiopsis brookii
           D9]
          Length = 262

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 20/173 (11%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             ++LSPY+  GVLS R+    ++E  ++ +   + G+   +NEL WR++++ L      
Sbjct: 61  AVTRLSPYIRHGVLSLRE----VREYILNTVENSEDGS-KLINELGWRDYWQRLY----- 110

Query: 301 VCMGKPFIPWTEKIEWNKDSH-------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           + +GK    W  + E+    H       L +  ++  TG   ID+  ++L   G++HN +
Sbjct: 111 MKLGKGI--WENQEEYKTGYHTEDYSHNLPEDIQESKTGLVCIDSFSQELRVTGYLHNHI 168

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           RM  AS+++    + W+ G ++F+  LLDGD ASNN  WQW AST +   PYF
Sbjct: 169 RMWLASYIIHWRKIQWQAGAKWFLQHLLDGDPASNNMSWQWVASTFSHK-PYF 220


>gi|146078221|ref|XP_001463490.1| DNA photolyase [Leishmania infantum JPCM5]
 gi|134067576|emb|CAM65855.1| putative DNA photolyase [Leishmania infantum JPCM5]
          Length = 932

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 36/244 (14%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-------------EFVDLLIKPKSGAFSWLNELI 286
           Q  +++SPY+++G LSPR+ +  L+E             +F + L++            +
Sbjct: 592 QKLARVSPYIALGALSPRKYYEVLREFAQENQRDAFVQQQFREGLLR------------L 639

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            R  Y H M       +   + P  E      EW  D  ++Q W  G TG P  DAAMR+
Sbjct: 640 SRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRE 699

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G++    R   A  L +    DWR+G E+     LD D     G + ++     D 
Sbjct: 700 LVGTGFVAQEGRQALAWLLTRGYGQDWRVGAEWMERCSLDYDPFVCYGNYAYSCGLMLDD 759

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456
                + N      + D  G +++ WLP+L+ VP  YIH PH   ++        L  NY
Sbjct: 760 FGE-PVRNVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGKNY 818

Query: 457 PLPI 460
           P P+
Sbjct: 819 PYPL 822


>gi|322496922|emb|CBZ31992.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 932

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 36/244 (14%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-------------EFVDLLIKPKSGAFSWLNELI 286
           Q  +++SPY+++G LSPR+ +  L+E             +F + L++            +
Sbjct: 592 QKLARVSPYIALGALSPRKYYEVLREFAQENQRDAFVQQQFREGLLR------------L 639

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            R  Y H M       +   + P  E      EW  D  ++Q W  G TG P  DAAMR+
Sbjct: 640 SRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRE 699

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G++    R   A  L +    DWR+G E+     LD D     G + ++     D 
Sbjct: 700 LVGTGFVAQEGRQALAWLLTRGYGQDWRVGAEWMERCSLDYDPFVCYGNYAYSCGLMLDD 759

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456
                + N      + D  G +++ WLP+L+ VP  YIH PH   ++        L  NY
Sbjct: 760 FGE-PVRNVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGKNY 818

Query: 457 PLPI 460
           P P+
Sbjct: 819 PYPL 822


>gi|322488942|emb|CBZ24191.1| putative DNA photolyase [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 933

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 36/244 (14%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-------------EFVDLLIKPKSGAFSWLNELI 286
           Q  +++SPY+++G LSPR+ +  L+E             +F + L++            +
Sbjct: 593 QKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLLR------------L 640

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            R  Y H M       +   + P  E      EW  D  ++Q W  G TG P  DAAMR+
Sbjct: 641 SRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRE 700

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G++    R   A  L +    DWR+G E+     LD D     G + ++     D 
Sbjct: 701 LVGTGFVAQEGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGNYAYSCGLMLDD 760

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456
                + N      + D  G +++ WLP+L+ VP  YIH PH   ++        L  NY
Sbjct: 761 FGE-PVRNVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGRNY 819

Query: 457 PLPI 460
           P P+
Sbjct: 820 PYPL 823


>gi|323650256|gb|ADX97214.1| cryptochrome 1a isoform 1 [Perca flavescens]
          Length = 278

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 8/138 (5%)

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W
Sbjct: 1   IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELLLDADWSVNAGSWMW 60

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
             S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      
Sbjct: 61  L-SCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEIVQKAA 119

Query: 449 KNDLSLNYPLPIVDHKKA 466
           K  + ++YP P+V+H +A
Sbjct: 120 KCVIGVHYPKPMVNHAEA 137


>gi|171057934|ref|YP_001790283.1| deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii
           SP-6]
 gi|170775379|gb|ACB33518.1| Deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii
           SP-6]
          Length = 420

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 98/217 (45%), Gaps = 18/217 (8%)

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254
           R  D P    D + P        I R   +   Y         A+ G   LSPYL+ G++
Sbjct: 8   RLEDSPAPWADTLPPTRSAALARIAR--VRPAAYARTRNHLDGAVTG---LSPYLTHGLI 62

Query: 255 S-PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           + P      L+ E +++  K        + EL WREF+RH         +         +
Sbjct: 63  TLPEVLAGVLQRERLEVRHK-------LVFELGWREFFRHAWGHAGDAILQSLHT--GPR 113

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
            +      L    +Q  TG P+ID A+R L   G +HN  RM  AS++V    V WR G 
Sbjct: 114 PDETCAPVLPADIRQARTGVPVIDEAVRTLYATGTLHNHARMWLASYVVHLRHVHWRAGA 173

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           ++ ++ LLDGDLASN+  WQW A TG+   PY  +FN
Sbjct: 174 DWLVAHLLDGDLASNHLSWQWVAGTGSHK-PY--LFN 207


>gi|332093769|gb|EGI98823.1| deoxyribodipyrimidine photo-lyase domain protein [Shigella boydii
           5216-82]
          Length = 78

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 50/73 (68%)

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           RIFNP  QG++FD +G FIR WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A
Sbjct: 4   RIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEA 63

Query: 467 CHHTLNQYYAAKK 479
              TL  Y AA+K
Sbjct: 64  RVQTLAAYEAARK 76


>gi|71386194|gb|AAZ31072.1| cryptochrome 2B apoprotein [Medicago sativa]
          Length = 154

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 66/107 (61%), Gaps = 6/107 (5%)

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ +P IQG ++D +
Sbjct: 2   VKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPEIQGTKYDSE 61

Query: 422 GTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462
           G ++R WLPEL  +PT++IH    AP + L  + + L  NYP PI+D
Sbjct: 62  GEYVRQWLPELARIPTEWIHHPWNAPPTVLRASGVELGQNYPKPIID 108


>gi|213423099|ref|ZP_03356117.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 47

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/47 (76%), Positives = 40/47 (85%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           L+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q +RFD  G FIR
Sbjct: 1   LIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFIR 47


>gi|300309758|ref|YP_003773850.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1]
 gi|300072543|gb|ADJ61942.1| deoxyribodipyrimidine photolyase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 439

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 91/186 (48%), Gaps = 21/186 (11%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA---- 296
             + LSPYL+ G++S R     + + +      P      ++ EL WR FYR++ +    
Sbjct: 71  AVTGLSPYLTHGMVSLRDVLAGVCQRY------PLEVQHKFVYELGWRAFYRYVWSRRGA 124

Query: 297 -FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             + S+  G   +P     E      L    + G TG P+ID A+R L   G +HN  RM
Sbjct: 125 RIFDSLHAGP--LP-----EAAYARELPDDIRAGATGVPVIDQAVRTLYATGNLHNHARM 177

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             AS++V    V WR G ++ +  LLDGDLASN+  WQW A TG+   PY  +FN     
Sbjct: 178 WLASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTGSHK-PY--LFNAENVA 234

Query: 416 KRFDPQ 421
           K   PQ
Sbjct: 235 KYAPPQ 240


>gi|119510319|ref|ZP_01629455.1| hypothetical protein N9414_16217 [Nodularia spumigena CCY9414]
 gi|119465063|gb|EAW45964.1| hypothetical protein N9414_16217 [Nodularia spumigena CCY9414]
          Length = 280

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 94/173 (54%), Gaps = 20/173 (11%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             ++LSPY+  GVLS R+    ++++ ++ +  P   A   +NEL WR++++ L      
Sbjct: 61  AVTRLSPYIRYGVLSLRE----VRDDVLEKVQDPND-ASKLINELGWRDYWQRLY----- 110

Query: 301 VCMGKPFIPWTEKIEWN-----KD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           V +G     W ++ E+      KD    L      G TG   ID+  ++L + G++HN +
Sbjct: 111 VKLGDRI--WEDQEEYKTGYSPKDYADQLPADITAGTTGMVCIDSFSQELRSTGYLHNHM 168

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           RM  A+++V    + W+ G ++F+  LLDGD ASNN  WQW AST +   PYF
Sbjct: 169 RMWLAAYIVHWRRIRWQAGAKWFLEHLLDGDPASNNMSWQWVASTFSHK-PYF 220


>gi|149928547|ref|ZP_01916775.1| probable deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
 gi|149822733|gb|EDM81992.1| probable deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
          Length = 426

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 19/190 (10%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEE----FVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
             + LSP+++ G LS R+    L E+    F D LI           E  WREF++H  A
Sbjct: 38  AVTGLSPWITHGYLSVREAAQLLMEKYRLSFEDKLI----------FEFAWREFFKHAHA 87

Query: 297 FYPSVCMGKPFIP-WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              +  +     P W+ K     +  L +  ++G TG   IDA +  L   G++HN +RM
Sbjct: 88  ELGNGILSDVRRPVWSGKY----NQQLPEDIREGRTGVEAIDAGVALLYETGYLHNHVRM 143

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             AS++V    V W++G ++  + LLDGDLASN+  WQW A T +     F   N     
Sbjct: 144 WIASYVVHMRKVHWKVGADWMYAHLLDGDLASNHLSWQWVAGTFSHKPYVFNADNVKKYA 203

Query: 416 KRFDPQGTFI 425
            ++D   T I
Sbjct: 204 PKWDCSDTAI 213


>gi|297537351|ref|YP_003673120.1| DNA photolyase FAD-binding protein [Methylotenera sp. 301]
 gi|297256698|gb|ADI28543.1| DNA photolyase FAD-binding protein [Methylotenera sp. 301]
          Length = 413

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 33/176 (18%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL-----MA 296
            + LSPYL  G ++  + +  +K  F        + A   + EL WR+++R +      A
Sbjct: 66  VTHLSPYLRHGCVTLNEAYEFIKRRF-------DASADKLVYELAWRDYWRQVWFSEGNA 118

Query: 297 FY-----PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ-LNTIGWMH 350
            Y     P V +G    P +E I            +QG TG P +D  + + L   G++H
Sbjct: 119 IYSDMEPPKVAIGHA--PLSEDI------------RQGKTGLPCMDGFINEDLFATGYVH 164

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           N  RM  +S++V    VDWR+  ++F + L+DGD+ASN+  WQW AST + S PYF
Sbjct: 165 NHARMWLSSYIVHHRKVDWRLAADWFEAYLIDGDIASNHLSWQWVASTFS-SKPYF 219


>gi|46560024|gb|AAT00492.1| cryptochrome 2 [Cebus apella]
          Length = 166

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLM 295
           +   + LSPYL  G LS R  + RL     DL  K K  +    S   +L+WREF+    
Sbjct: 13  LASPTGLSPYLRFGCLSCRLFYYRL----WDLYKKVKRNSTPPLSLFGQLLWREFFYTAA 68

Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
              P      G P      +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 69  TNNPRFDRMEGNPI---CIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 125

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           R   A FL + DL V W  G   F   LLD D + N G W
Sbjct: 126 RHAVACFLTRGDLWVSWESGVRVFDDVLLDADFSVNAGSW 165


>gi|71416884|ref|XP_810407.1| DNA photolyase [Trypanosoma cruzi strain CL Brener]
 gi|70874932|gb|EAN88556.1| DNA photolyase, putative [Trypanosoma cruzi]
          Length = 341

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 30/222 (13%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWN--------RLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           Q  S++SPYLS G LSPR+ +          L++ FV +  +      S       R  Y
Sbjct: 6   QRLSRVSPYLSNGSLSPRRFYEMLRRYATENLRDNFVQMQYREALLRLS-------RRDY 58

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
            H M       +  P+ P  E+ +    W  D  ++Q W  G TG P  DAAMR+L T G
Sbjct: 59  WHWMGLRYGTLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTG 118

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           ++ +  R   A  L +    DWR+G E+     LD D     G + + +    D      
Sbjct: 119 FVAHEGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDD----- 173

Query: 408 IFNPTIQ-----GKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            F   ++         D  G +++ WLP L+ +P  YIH PH
Sbjct: 174 -FGEPVRSVHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPH 214


>gi|322817684|gb|EFZ25335.1| DNA photolyase, putative [Trypanosoma cruzi]
          Length = 871

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 106/244 (43%), Gaps = 36/244 (14%)

Query: 240 QGTSQLSPYLSIGVLSPRQ------CWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           Q  S++SPYLS G LSPR+      C+    L++ FV +  +        L  L  R+++
Sbjct: 536 QRLSRVSPYLSNGSLSPRRFYEMLRCYTTENLRDNFVQMQYREA------LLRLSRRDYW 589

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
            H M       +  P+ P  E+ +    W  D  ++Q W  G TG P  DAAMR+L T G
Sbjct: 590 -HWMGLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTG 648

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           ++ +  R   A  L +    DWR+G E+     LD D     G + + +    D      
Sbjct: 649 FVAHEGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDD----- 703

Query: 408 IFNPTIQ-----GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456
            F   ++         D  G +++ WLP L+ +P  YIH PH    +        L   Y
Sbjct: 704 -FGEPVRSVHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTY 762

Query: 457 PLPI 460
           P P+
Sbjct: 763 PYPL 766


>gi|157865002|ref|XP_001681209.1| DNA photolyase [Leishmania major strain Friedlin]
 gi|68124504|emb|CAJ02458.1| putative DNA photolyase [Leishmania major strain Friedlin]
          Length = 934

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 103/244 (42%), Gaps = 36/244 (14%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-------------EFVDLLIKPKSGAFSWLNELI 286
           Q  +++SPY+++G LSPR+ +  L+E             +F + L++            +
Sbjct: 594 QKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLLR------------L 641

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            R  Y H M       +   + P  E      EW  D  ++Q W  G TG P  DAAMR+
Sbjct: 642 SRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPEWRHDRKVVQRWCDGLTGIPFADAAMRE 701

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G++    R   A  L +    DWR+G E+     LD D     G +  +     D 
Sbjct: 702 LVGTGFVAQEGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGNYAHSCGLMLDD 761

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456
                + N      + D  G +++ WLP+L+ VP  YIH PH   ++        L  NY
Sbjct: 762 FGE-PVRNVYYLAHQHDQTGIYVKKWLPQLSKVPPVYIHRPHVLTERMQAMHGVYLGKNY 820

Query: 457 PLPI 460
           P P+
Sbjct: 821 PYPL 824


>gi|89255767|ref|YP_513129.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica LVS]
 gi|89143598|emb|CAJ78782.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica LVS]
          Length = 164

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 61/125 (48%), Gaps = 2/125 (1%)

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           +    +AWK G TG+P+IDA MR L    W++ R+R +  SF    L +DWR+   Y   
Sbjct: 42  NQQCFEAWKTGNTGYPMIDACMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAG 101

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
              D +   +    Q    +G   +   RI+NP  Q     P   FIR WLPEL NV  +
Sbjct: 102 LFTDYEPGIHYS--QVQMQSGTTGINSIRIYNPIKQSIDQYPNVEFIRRWLPELENVSNE 159

Query: 439 YIHAP 443
            IH P
Sbjct: 160 NIHTP 164


>gi|154332778|ref|XP_001562651.1| DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134059654|emb|CAM41774.1| putative DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 959

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 106/246 (43%), Gaps = 40/246 (16%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE-------------EFVDLLIKPKSGAFSWLNELI 286
           Q  +++SPY+++G LSPR+ +  L+E             +F + L++            +
Sbjct: 619 QKLARVSPYIALGALSPRKYYEVLREFAQANQRDAFVQQQFREGLLR------------L 666

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            R  Y H M       +   + P  E  +    W  D  ++Q W  G TG P  DAAMR+
Sbjct: 667 SRRDYWHWMGLRFGDRLFFSYGPHPEHTDDVPDWRHDRKVVQRWCNGLTGIPFADAAMRE 726

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G++ +  R   A  L +    DWR+G E+     LD D     G + ++     D 
Sbjct: 727 LVGTGFVAHEGRQALAWLLTRGYGQDWRLGAEWMERCSLDYDPFVCYGNYAYSCGLILDD 786

Query: 403 V--PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSL 454
              P   ++    Q    D  G +++ WLP+L+ VP  Y+H PH   ++        L  
Sbjct: 787 FGEPVRSVYYLAHQ---HDQTGIYVKKWLPQLSKVPPVYVHRPHVLTERMQAMHGVYLGK 843

Query: 455 NYPLPI 460
           NYP P+
Sbjct: 844 NYPYPL 849


>gi|71659265|ref|XP_821356.1| DNA photolyase [Trypanosoma cruzi strain CL Brener]
 gi|70886733|gb|EAN99505.1| DNA photolyase, putative [Trypanosoma cruzi]
          Length = 875

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 36/244 (14%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWN--------RLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           Q  S++SPYLS G LSPR+ +          L++ FV +  +        L  L  R+++
Sbjct: 540 QRLSRVSPYLSNGSLSPRRFYEMLRRYATENLRDNFVQMQYREA------LLRLSRRDYW 593

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
            H M       +  P+ P  E+ +    W  D  ++Q W  G TG P  DAAMR+L T G
Sbjct: 594 -HWMGLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTG 652

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           ++ +  R   A  L +    DWR+G E+     LD D     G + + +    D      
Sbjct: 653 FVAHEGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDD----- 707

Query: 408 IFNPTIQ-----GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456
            F   ++         D  G +++ WLP L+ +P  YIH PH    +        L   Y
Sbjct: 708 -FGEPVRSVHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTY 766

Query: 457 PLPI 460
           P P+
Sbjct: 767 PYPL 770


>gi|257359518|gb|ACV53158.1| cryptochrome-like protein [Crassostrea gigas]
          Length = 393

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 163/405 (40%), Gaps = 39/405 (9%)

Query: 18  LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77
           LR+ DN +L       D +   VFI   E          +  F+   L  + K+L   G 
Sbjct: 2   LRLHDNPSLIDGLSECD-RFYPVFIFDGEVAGTKTAGYNRFRFLLECLQDLDKNLKAAGT 60

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-VICKSF 136
                Q    D     L+    +  VTK+ +    E     RD+L+ + L  + V C   
Sbjct: 61  RLYCFQGQPTDI----LERLIEEWGVTKVTFEADPEPIWQERDRLVRELLDKKNVQCVEK 116

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-----IRLTGPVTPS 191
               L  P  I+ +        +P     + NLV + +   P P        ++ PV+ +
Sbjct: 117 VSHTLWDPYEIIEN-----NGGSPPLTFSLFNLVTSTIGPPPRPVEDPDFTDISLPVSQN 171

Query: 192 NIPRFFDYPFQAIDPMFPIGEQN------------ALHILRKFCKEKVYYYVEQRDIPAI 239
           +  +F     + ++      EQN            AL +L    K +   Y     +P  
Sbjct: 172 HDKQFGIPSLEDLNVRPECEEQNKRLVEWLGGESKALELLAIRMKHEEKAYENGYVMPNQ 231

Query: 240 QGTSQLSPYLSI------GVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYR 292
                LSP LS+      G LS R+ +  + ++F +  +KP  GA  S   +L+WRE++ 
Sbjct: 232 YHPDLLSPPLSLSAHLRFGCLSVRKFYWSIHDKFEE--VKPSMGAPVSLSAQLMWREYF- 288

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           + MA            P    I W  +    + W QG TG+P IDA M+QL   GW+H+ 
Sbjct: 289 YTMAINNINYDKMETNPICLNIPWYDNPEHEEKWTQGETGYPWIDAIMKQLRYEGWVHHV 348

Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
            R   + FL + DL ++W +G + F   LLD D +   G W W +
Sbjct: 349 ARHAVSCFLTRGDLWLNWEVGLKVFYKYLLDADWSVCAGNWMWLS 393


>gi|149279053|ref|ZP_01885187.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
           sp. BAL39]
 gi|149230332|gb|EDM35717.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
           sp. BAL39]
          Length = 410

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 10/165 (6%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE----LIWREFYRHLMAF 297
           +S+LS +LS+G LSPR  +  +KE       + K G+ +  N+    L+WR++YR +   
Sbjct: 226 SSRLSGWLSLGCLSPRMVYWMVKE------AESKFGSNANFNQMLLGLLWRDYYRFMFKK 279

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           + +    +P          +  + +L+ WK   TG+P+ID  M +LN  G++    R++ 
Sbjct: 280 HGTRFFKEPDFESDFFSSVDPANSVLKKWKTADTGYPLIDNYMTELNDTGYISYTGRLVV 339

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           A++LV  L V W  G  YF  +L+D   ASN G W   A  G D 
Sbjct: 340 ATYLVHFLKVHWTNGAVYFEEKLIDYAPASNWGNWANVAGVGKDG 384


>gi|87300685|ref|ZP_01083527.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           5701]
 gi|87284556|gb|EAQ76508.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           5701]
          Length = 299

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 98/207 (47%), Gaps = 25/207 (12%)

Query: 202 QAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
           QA     PI  G + AL  L     + V Y   +  +      S LSPY+  GV+S  Q 
Sbjct: 55  QASGGASPIRGGSKPALAALEAL--DPVRYAASRNHLDGA--VSGLSPYIRHGVVSLAQV 110

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
            + +++        P+  +   L EL WR++++ L      + +G     W E +E  K 
Sbjct: 111 RDLVQQRMAG---GPEPVSEKLLQELAWRDYWQRLW-----LRLGDGL--W-ENLEPLKT 159

Query: 320 SHLLQAWK--------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
            H   A+         +G TG   IDA  RQL+  GW+HN  RM  A+++V    V W+ 
Sbjct: 160 GHPEAAYAPELPGDIDEGRTGLACIDAFARQLSDTGWLHNHARMWLAAYVVHWRRVRWQA 219

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAAST 398
           G  +F+  LLDGD ASNN  WQW AS+
Sbjct: 220 GAHWFLRHLLDGDPASNNLSWQWVASS 246


>gi|255264745|ref|ZP_05344087.1| deoxyribodipyrimidine photo-lyase family protein [Thalassiobium sp.
           R2A62]
 gi|255107080|gb|EET49754.1| deoxyribodipyrimidine photo-lyase family protein [Thalassiobium sp.
           R2A62]
          Length = 378

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 102/253 (40%), Gaps = 30/253 (11%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQR--DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           FP     AL  L  F       Y   R  D P   G S LSPY+   +L+  +    ++E
Sbjct: 5   FPPTRAAALTRLHAFAPGAGRAYARDRNFDRPDAAGVSALSPYIRHRMLTEPEVLASVRE 64

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI-----EWN--- 317
              D      + A  ++ E+ WR +++  +   PSV        W + +      WN   
Sbjct: 65  NHSD------ADAEKFIQEVFWRTYWKGWLELRPSV--------WDDYVVERDQAWNDVQ 110

Query: 318 KDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
             S L  AW+    G TG    D   + L   G++HN  RM  AS  +  L + W +G +
Sbjct: 111 TQSGLRTAWEDACLGRTGIECFDHWAQDLAATGYLHNHSRMWFASIWIFTLRLPWSLGAD 170

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPT-IQGKRFDPQGTFIRHWLPEL 432
           +F+  LLDGD ASN   W+W A        Y  R  N T   G RF P+     H  P  
Sbjct: 171 FFLRHLLDGDAASNTLSWRWVAGLQTIGKTYLARPDNITKYTGGRFRPK-ELATHAFPVD 229

Query: 433 NNVPTQYIHAPHS 445
              P     AP S
Sbjct: 230 GTPPRARGPAPTS 242


>gi|294339500|emb|CAZ87859.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As]
          Length = 396

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 14/174 (8%)

Query: 239 IQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           +QG  ++LSPYL+ G L  R     L      L ++ K      L EL WR F++ +   
Sbjct: 37  LQGHVTRLSPYLTHGFLGLRDVVQHLSMRH-GLGLQDKL-----LQELGWRAFFQQVWRH 90

Query: 298 YPS-VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             S +   +   P  ++        L     +G TG P+ID A+R L   G++HN  RM 
Sbjct: 91  EGSGILQSQHLGPLPDRA---YAPALPADLCEGRTGVPVIDQAVRTLYATGYLHNHARMW 147

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
            AS+ V    V WR G ++ ++ LLDGDLASN+  WQW A TG+ S PY  +FN
Sbjct: 148 LASYTVHLRKVHWRAGADWMVAHLLDGDLASNHLSWQWVAGTGS-SKPY--LFN 198


>gi|27804353|gb|AAO22533.1| cryptochrome 2 [Brassica rapa subsp. pekinensis]
          Length = 157

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 15/162 (9%)

Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN--RLKEEF--VD 269
           NA  +L +F ++++  Y +         TS LSPYL  G +S R+ +   R+K+     D
Sbjct: 2   NADKLLTEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARD 61

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYP-----SVCMGKPFIPWTEKIEWNKDSHLLQ 324
              + +  A  +L  +  R++ R++   +P     S+     F PW   +E        +
Sbjct: 62  KNGQGEESAVLFLRGIGLRDYSRYICFNFPFTHEQSLLSHLRFFPWDADVE------KFK 115

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           AW+QG TG+P++DA MR+L   GWMHNR+R+I +SF VK LL
Sbjct: 116 AWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLL 157


>gi|260436077|ref|ZP_05790047.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp.
           WH 8109]
 gi|260413951|gb|EEX07247.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp.
           WH 8109]
          Length = 303

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 18/204 (8%)

Query: 211 GEQNALHILRKFCKEK-----VYYYVEQRDIPAIQGT-SQLSPYLSIGVLSPRQCWNRLK 264
           GE + +   R+  K+K     V +Y + R+   ++G  + LSPY+  GVL+  +  + + 
Sbjct: 36  GELSPIRGGREAAKDKLRRIDVRHYAKSRN--HLKGAVTGLSPYIRHGVLTLAEVRDSV- 92

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHL 322
             F  +  + + G    +NEL WR+F++ +            +PF    +   + ++  L
Sbjct: 93  --FARIRNRDEGGKL--INELGWRDFWQRMWLDLGDAINNDQEPFKTGHDAGAYARE--L 146

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
               + G TG   +D    QL T GW+HN  RM  A++LV    V W+ G ++F+  LLD
Sbjct: 147 PADVRAGSTGLACMDGFRDQLVTTGWLHNHARMWMAAWLVHWRRVHWKAGADWFLEHLLD 206

Query: 383 GDLASNNGGWQWAASTGNDSVPYF 406
           GD ASN+  WQW AST +   PYF
Sbjct: 207 GDPASNHLSWQWVASTFSHK-PYF 229


>gi|296135394|ref|YP_003642636.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
 gi|295795516|gb|ADG30306.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
          Length = 396

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 87/178 (48%), Gaps = 29/178 (16%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY----RH---- 293
            ++LSPYL+ G L  R     L      L ++ K      L EL WR F+    RH    
Sbjct: 41  VTRLSPYLTHGFLGLRDVVQHLSMRH-GLGLQDKL-----LQELGWRAFFQQVWRHEGKG 94

Query: 294 -LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            L + +P     + + P            L    ++G T  P+ID A+R L   G++HN 
Sbjct: 95  ILQSQHPGPLPDRAYAP-----------ALPADLREGRTDVPVIDQAVRTLYATGYLHNH 143

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
            RM  AS+ V    V WR G ++ ++ LLDGDLASN+  WQW A TG+ S PY  +FN
Sbjct: 144 ARMWLASYTVHLRKVHWRAGADWMVAHLLDGDLASNHLSWQWVAGTGS-SKPY--LFN 198


>gi|156752076|gb|ABU93790.1| cryptochrome 1 [Carassius auratus]
          Length = 132

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 59/115 (51%), Gaps = 2/115 (1%)

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLV 367
           P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL +
Sbjct: 18  PICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWI 77

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            W  G + F   LLD D + N G W W  S  +    +F  + P   G+R DP G
Sbjct: 78  SWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNG 131


>gi|293321545|emb|CAZ66368.1| cryptochrome [Crateromorpha meyeri]
          Length = 520

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 133/307 (43%), Gaps = 40/307 (13%)

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ---LSPYLSIGVLSPR 257
             +ID  F  GE  A+  L K    +     E  ++P +   +Q   +SP +  G +S R
Sbjct: 196 MSSIDTKFRGGETAAILQLEKLIANRC----EPNNLPKVAQLNQYDAISPAIKFGCISVR 251

Query: 258 QCWNRLKEEFVDLLIKPKSGAFS--WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
             +NR+ +      ++PK         + L  R++   +    P++        +T  + 
Sbjct: 252 TIYNRVSK------LEPKYNEVKNQIYDGLRNRDYCILVGGNCPNIDNQGSI--YTYILP 303

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL-VDWRIGEE 374
           W+        ++ G TG+P IDAA+ QL   G++HN ++ I    L  DL+ + W  G  
Sbjct: 304 WDVKQDASTRFQTGRTGYPFIDAAIAQLKREGFIHNSVKNILVRTLTCDLMWIGWHEGVR 363

Query: 375 YFMSQLLDGDLASNNGGWQWAASTG--NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
            F    LD + A     W   + +    + +   +I NP  + K  D  G +IR +LPEL
Sbjct: 364 MFYKWSLDYNAAICALSWMHGSKSTWLLEEISISQI-NPIEEAKEIDKDGDYIRKYLPEL 422

Query: 433 NNVPTQYIHAPHSWLDKND--------LSLNYPLP----IVDHKKACHHTLNQYY----- 475
            + P++YIH P  WL   D        +  +YP P    + +  + C   L  +Y     
Sbjct: 423 KDYPSEYIHTP--WLAPLDQQIESECVIGQDYPYPNYCDVEERVQQCRKRLQIFYNIMPI 480

Query: 476 AAKKQSL 482
           A K+++L
Sbjct: 481 AKKRRTL 487


>gi|255607778|ref|XP_002538784.1| DNA photolyase, putative [Ricinus communis]
 gi|223510429|gb|EEF23599.1| DNA photolyase, putative [Ricinus communis]
          Length = 351

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 97/207 (46%), Gaps = 18/207 (8%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           + P +  G  +AL  L     E  Y     +   A+ G   LSPYL  G LS       L
Sbjct: 43  LSPAWQGGRASALARLSTVDAED-YARSRNQLTGAVTG---LSPYLRHGCLS-------L 91

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            E   D+  +    A     EL +R+++R +   +    M     P         D  + 
Sbjct: 92  PETMADVGARFGKHAHKLAAELSYRDYFRQVWYRFGEAIMQ----PMESPKVGLGDRPMP 147

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
               QG+TG   +D  +RQL   G++HN  RM  A+++V  L VDWR   ++F +QLLDG
Sbjct: 148 DFIAQGFTGLVCMDEIVRQLQQHGYVHNHARMWFAAYVVHWLKVDWRQAADWFETQLLDG 207

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFN 410
           D ASN+  WQW AS+ ++  PY  +FN
Sbjct: 208 DTASNHLSWQWIASSFSNK-PY--LFN 231


>gi|148243387|ref|YP_001228544.1| DNA photolyase FAD binding subunit [Synechococcus sp. RCC307]
 gi|147851697|emb|CAK29191.1| DNA photolyase FAD binding domain [Synechococcus sp. RCC307]
          Length = 330

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 126/292 (43%), Gaps = 58/292 (19%)

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSL---------------PVPAIRLTGPVTPSNIPRF 196
           + + +++ P R + I  ++Q  +                  PVPA   +  + P ++PR 
Sbjct: 1   MPVTRIFLPVRSSSIGAVLQGGIARFSPMPRQDRRLVDQLAPVPAA--SSSLDPGDLPRQ 58

Query: 197 F------------DYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQG-T 242
                        ++P +A   + PI G + A  +  +  K     Y   R+   ++G  
Sbjct: 59  LPNREALNSLLQQEFP-EASGQLSPIRGGRKAAEM--RLSKVDPARYARSRN--HLEGMV 113

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + LSPY+  GVLS  +       + V   I+ +      +NEL WR+F++ +      + 
Sbjct: 114 TGLSPYIRHGVLSLAEV-----RDAVFRRIRHRDEGGKLINELGWRDFWQRMW-----LE 163

Query: 303 MGKPFIPWTEKIEWNKDSH--------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +G       E  E  K  H        L Q    G TG   +D    QL T GW+HN  R
Sbjct: 164 LGDAI---AEDQEEYKTGHPASSYSRELPQDLCDGCTGLACMDGFHEQLVTTGWLHNHAR 220

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           M  A+++V    V WR G ++F+  LLDGD ASN+  WQW AS  +   PYF
Sbjct: 221 MWLAAYVVHWRRVHWRAGADWFLEHLLDGDPASNHLSWQWVASCFSHK-PYF 271


>gi|119094174|gb|ABL60996.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
           HF10_25F10]
          Length = 254

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 97/219 (44%), Gaps = 29/219 (13%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             ++LSPY+  GVLS  +  N      VD    PK  A  ++ EL WR++++ +   +P 
Sbjct: 51  AVTRLSPYIRHGVLSLDEVRNAALASVVD----PKQ-AEKFIQELAWRDYWQRIYLEHPE 105

Query: 301 VCMGKPFIPWTEKIEWNK-------DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                    WT+   +         D+ L      G TG   ID  +  L   G++HN  
Sbjct: 106 RI-------WTDVESYKTGFDAAEYDAELPADIAAGETGIACIDQFIATLVETGYLHNHA 158

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM  AS+ V    V W+ G  +F+  L+D D ASNN  WQW AST ++  PY  IFN   
Sbjct: 159 RMYLASYTVHWRRVSWQAGARFFLEHLVDADPASNNLSWQWIASTFSNK-PY--IFNLEN 215

Query: 414 QGKRFDPQ-GTFIRHWL------PELNNVPTQYIHAPHS 445
             K   P   T  RH L        L+ +   Y+  PH 
Sbjct: 216 VAKYCGPDINTIPRHNLVLDQSYEHLSELLFPYMGGPHG 254


>gi|298162590|gb|ADI59662.1| cryptochrome [Amphiprion melanopus]
          Length = 308

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 87/186 (46%), Gaps = 13/186 (6%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYLSIGVLSPRQCW 260
           ++P GE  AL  L +  + K +  V   + P +   S       LSPY   G LS R  +
Sbjct: 125 VWPGGETEALTRLERHLERKAW--VANFERPRMNANSLLASPTGLSPYPRFGCLSCRLFY 182

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK-PFIPWTEKIEWNKD 319
            +L + +  +  K  S   S   +L+WREF+       P  C  K    P   +I W+++
Sbjct: 183 FKLTDLYRKV-KKNSSPPLSLYGQLLWREFFYTAATNNP--CFDKMESNPICVQIPWDRN 239

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMS 378
              L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F  
Sbjct: 240 PEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEE 299

Query: 379 QLLDGD 384
            LLD D
Sbjct: 300 LLLDAD 305


>gi|320102681|ref|YP_004178272.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
 gi|319749963|gb|ADV61723.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
          Length = 456

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 19/165 (11%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             ++LSPYL  GVL+  +  N   +     L+K    A  ++NEL WR++++ +   Y  
Sbjct: 74  AVTRLSPYLRHGVLTLAEVRNHALK-----LVKHPVEAAKFINELGWRDYWQRV---YER 125

Query: 301 VCMGKPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +  G     W ++  +          + L Q   +G TG   +D   R+L   G++HN  
Sbjct: 126 LGDGV----WRDREPYKTGYSARRYAAELPQEIAEGQTGMACMDEFARELRDTGYLHNHA 181

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           RM  A+++V    V W+ G  +F+  LLDGD ASNN  WQW AST
Sbjct: 182 RMWLAAYVVHWRQVRWQAGATWFLEHLLDGDPASNNLSWQWVAST 226


>gi|304391892|ref|ZP_07373834.1| deoxyribodipyrimidine photo-lyase family protein [Ahrensia sp.
           R2A130]
 gi|303296121|gb|EFL90479.1| deoxyribodipyrimidine photo-lyase family protein [Ahrensia sp.
           R2A130]
          Length = 408

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 98/224 (43%), Gaps = 17/224 (7%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIP-AIQG---TSQLSPYLSIGVLSPRQCWNRL 263
           FP   QNAL     F  E    Y   R+I   ++G    S+LSPY+   +++ ++     
Sbjct: 7   FPATRQNALKQAENFAPEMGSNYSSNRNIDRGLEGDSTVSKLSPYIRRRLMTEQEL---- 62

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
               + L       +  ++ E++WR +++  +   P+V          E+   + ++ + 
Sbjct: 63  --ALLALETHGAKASGKFVQEIVWRTYWKGWLEHRPTVWNDYLQDVADERDRLSSNTGIH 120

Query: 324 QAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
            A++Q   G TG    D   ++L    ++HN  RM  AS  V  L + W +G E+F   L
Sbjct: 121 HAYQQAIEGRTGIECFDVWAQELVETNYLHNHARMSFASIWVHTLRLPWSLGAEFFFHHL 180

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYF---RIFNPTIQGKRFDPQ 421
           LDGD ASN   W+W A        Y     I N    G RF P+
Sbjct: 181 LDGDAASNTLSWRWVAGAHTAGKTYLADPAIINRCSNG-RFSPK 223


>gi|309779655|ref|ZP_07674414.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp.
           5_7_47FAA]
 gi|308921596|gb|EFP67234.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp.
           5_7_47FAA]
          Length = 516

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 120/283 (42%), Gaps = 27/283 (9%)

Query: 218 ILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL----- 270
           +LR F  E+   Y      P  A    S+LSPYL+ G L  R+     ++  + L     
Sbjct: 201 VLRDFLFERSRNYRGGISSPLTAPSACSRLSPYLAYGCLGMREVVQATEQRVLQLRASTD 260

Query: 271 --LIKPKSGAFSWLNELIWREFYRHLMAFYPSV---CMGKPFIPWTEKIEWNKDSHLLQA 325
              +  + G  ++++ L W   +   +   P++    + + +    E   WN D     A
Sbjct: 261 EDAVWQRKGLAAFVSRLHWHCHFIQKLESEPAIEFRNLHRGYDGLRESA-WNADH--FAA 317

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
              G TG+P++DA +  L   GW++ R+R +  S     L + WR    +   Q +D + 
Sbjct: 318 LVAGRTGWPMVDACVAMLRETGWINFRMRAMLVSVASYPLWLHWRPVGVWLARQFVDYEP 377

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
             +    Q  A  G   +   R++NP  Q +  DP G F+R WLP L  VP  ++  P  
Sbjct: 378 GIHWSQMQMQA--GTTGINTTRVYNPIKQAQDQDPHGRFVRRWLPALRRVPDAWLLQP-- 433

Query: 446 WLDKNDLSL--------NYPLPIVDHKKACHHTLNQYYAAKKQ 480
           W    D+          + P+P+VD + A      + +A + +
Sbjct: 434 WRMPPDVQARCGVRVGEDIPVPLVDLEAATRQAKMRVHALRAR 476


>gi|318042774|ref|ZP_07974730.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101]
          Length = 340

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 118/254 (46%), Gaps = 42/254 (16%)

Query: 178 PVPAIRLTG-----PVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRK------- 221
           PV    L+G     P  P  +PR F+   QA+      +FP G + +L   R        
Sbjct: 30  PVATDSLSGAPLSWPEQPGELPRQFES-RQALAAELQRLFP-GAEGSLSPFRGGRHQAEQ 87

Query: 222 -FCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
              + +   Y + R+   + G  ++LSPY+  G LS  +       + V   ++ ++   
Sbjct: 88  LLSRIQPARYAKGRNF--LDGPVTRLSPYIRQGALSLAEV-----RDAVFAKLRSRTDGE 140

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH-------LLQAWKQGYTG 332
             +NEL WR++++ L   +  +  G     W ++ E     H       L     +G TG
Sbjct: 141 KLINELGWRDYWQRL---WHQLGHGI----WRDQEELKTGHHPGAYSPELPGDIAEGRTG 193

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
              +D  + +L++ GW+HN  RM  A++LV    + W+ G ++F+  LLDGD ASNN  W
Sbjct: 194 LACMDGFITELHSTGWLHNHARMWLAAYLVHWRRIRWQAGAQWFLRHLLDGDPASNNLSW 253

Query: 393 QWAASTGNDSVPYF 406
           QW AS+ +   PYF
Sbjct: 254 QWVASSFSHK-PYF 266


>gi|116075573|ref|ZP_01472832.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           RS9916]
 gi|116066888|gb|EAU72643.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           RS9916]
          Length = 321

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 113/247 (45%), Gaps = 30/247 (12%)

Query: 178 PVPAIRLTGPVTPSNIPRFFDYP---FQAIDPMFPIGEQN----------ALHILRKFCK 224
           PVP      P  P ++ R FD      Q ++  FP  E            A H L++  +
Sbjct: 5   PVPPPLAWDPA-PGDLSRDFDDRQALAQLLETQFPEAEGELSPLQGGRTAAEHQLKRV-E 62

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            K Y         A+ G   LSP++  GVL+  +  + +  +  +   +   GA   +NE
Sbjct: 63  AKRYGRSRNHLDGAVTG---LSPWIRHGVLTLAEVRDAVFAQLNERHQRRDDGA-KLINE 118

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-----SHLLQAWKQGYTGFPIIDAA 339
           L WR+F++ + +      +G       E +    D       L    ++G TG   +DA 
Sbjct: 119 LGWRDFWQRMWSD-----LGDGINDDQEALNTGHDPASYARSLPTDIREGNTGLACMDAF 173

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            R+L T GW+HN  RM  A+++V    V W+ G ++F+  LLDGD ASN+  WQW AS+ 
Sbjct: 174 QRELVTHGWLHNHARMWMAAYVVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASSF 233

Query: 400 NDSVPYF 406
           +   PYF
Sbjct: 234 SHK-PYF 239


>gi|33864760|ref|NP_896319.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
 gi|33632283|emb|CAE06739.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           8102]
          Length = 299

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/240 (30%), Positives = 110/240 (45%), Gaps = 37/240 (15%)

Query: 187 PVTPSNIPRFF------------DYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQ 233
           P  P ++PR F            ++P  A  P+ PI G + A     K    +   Y + 
Sbjct: 7   PHNPGDLPRQFASRDALEALLVEEFP-SAEGPLSPIPGGRQAAEA--KLAGVQPARYAKS 63

Query: 234 RD--IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           R+    A+ G   LSPY+  GVL+  +    +K+   + + K   G    +NEL WR+F+
Sbjct: 64  RNHLNGAVTG---LSPYIRHGVLTLAE----VKQAVFERIRKRDDGG-KLINELGWRDFW 115

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTI 346
           + +      + +G       E  +   D+      L Q  + G TG   +D    +L T 
Sbjct: 116 QRMW-----LDLGDGIHDDQEAFKTGHDASSYARELPQDVRDGRTGLACMDGFRDKLVTT 170

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GW+HN  RM  A++LV    V W  G  +F+  LLDGD ASN+  WQW AS+ +   PYF
Sbjct: 171 GWLHNHARMWMAAWLVHWRRVHWTAGANWFLEHLLDGDPASNHLSWQWVASSFSHK-PYF 229


>gi|110680064|ref|YP_683071.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456180|gb|ABG32385.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 468

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 120/291 (41%), Gaps = 47/291 (16%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNR 262
           +FP   + AL  L  F  +    Y  +R+     G     S LSPYL   +++       
Sbjct: 72  LFPPSHRAALERLTAFVPKAGRDYAARRNYDLGPGNHTHVSTLSPYLRCRLIT------- 124

Query: 263 LKEEFVDLLIKPKSGAFS--WLNELIWREFYRHLMAFYPSVCMGKPFIPWTE-----KIE 315
            + E V+ ++   S A +  ++ E+ WR +++  +   P+V        WT+        
Sbjct: 125 -ESEVVNAVLHRHSPAAAEKFVQEVFWRTYWKGWLELRPAV--------WTQYQMALDQA 175

Query: 316 WN---KDSHLLQAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
           WN     + L   W+   +G TG    DA  R+L   G++HN  RM  AS  +  L + W
Sbjct: 176 WNDVQTQAGLRARWENACRGETGIHCFDAWARELVETGYLHNHARMWFASIWIFTLELPW 235

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFN-PTIQGKRFDPQGTFIRH 427
            +G ++F+  LLDGD ASN  GW+W A        Y  R  N       RF P+      
Sbjct: 236 ELGADFFLRHLLDGDPASNTLGWRWVAGIQTQGKTYLARTSNISKFTENRFHPKWQLAGE 295

Query: 428 WLPELNNVPTQYIHAPHS-----------WLDKNDLSLNYPLPIVDHKKAC 467
            +P    +P +    P              L + DLS  + L +VD   AC
Sbjct: 296 AIPRHAPLPPEPRSLPAGDAFDPALRTGFLLHEEDLSPGFFLNMVD-PHAC 345


>gi|254486393|ref|ZP_05099598.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp.
           GAI101]
 gi|214043262|gb|EEB83900.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp.
           GAI101]
          Length = 403

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 17/201 (8%)

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
            L  LR F  +   +Y E+R+           S LSPYL  G++S        + E +  
Sbjct: 15  GLERLRNFAPDAGRHYGERRNYLGTAKNPGAVSALSPYLRTGLVS--------QSEVLRT 66

Query: 271 LIKPKSG--AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           ++   S   A  ++ E++WR +++  +A  PSV                  S L Q W+ 
Sbjct: 67  VLDQHSAKDADRYIAEVLWRSYWQGWLALRPSVWDAYQADLKRLHNAVQTQSGLRQRWEN 126

Query: 329 ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
              G TG    DA   +L   G++HN  RM  AS  V  L + W++G ++F+  LLDG  
Sbjct: 127 ACLGQTGIAPFDAWANELAHSGYLHNHARMWFASIWVHTLELPWQLGADFFLRHLLDGCP 186

Query: 386 ASNNGGWQWAASTGNDSVPYF 406
           ASN  GW+W A       PY 
Sbjct: 187 ASNTLGWKWVAGIQTIGKPYL 207


>gi|293605132|ref|ZP_06687523.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
 gi|292816456|gb|EFF75546.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
          Length = 115

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 2/110 (1%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+WLR DLR+ DN AL AA  N    V A+F+A P+QWRQHG +  +  F   +L ++ +
Sbjct: 4   LLWLRTDLRMHDNPALAAAREN--GTVTALFLAAPDQWRQHGDAPAKVDFWLRNLHELSR 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
            L ++GI  +    +++  + E + ++C    +T++  N ++ INE RRD
Sbjct: 62  DLGERGIPLKLLTVADWSKAPEAIAAFCQAHAITQVHANTEWAINERRRD 111


>gi|159043938|ref|YP_001532732.1| putative deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae
           DFL 12]
 gi|157911698|gb|ABV93131.1| putative deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae
           DFL 12]
          Length = 405

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 90/201 (44%), Gaps = 15/201 (7%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQR--DIPAIQG---TSQLSPYLSIGVLSPRQC 259
           D  FP      L  LR F  +    Y   R  D+P  QG    SQLSPYL   +++  + 
Sbjct: 4   DTAFPPTRDAGLARLRDFLPKAAGDYTRGRNYDLPE-QGHPHVSQLSPYLRHRLVTEGEV 62

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
            + +   F          A  ++ E+ WR +++  +   PSV M             + +
Sbjct: 63  LDAVLGRFS------LKSAEKFVQEVYWRTYWKGWLERRPSVWMAYKGGLSQALDRLHVE 116

Query: 320 SHLLQAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
           S     W+   +G TG    DA  R+L + G+MHN  RM  AS  +  L + W +G ++F
Sbjct: 117 SGFRAEWEAACKGETGIDGFDAWARELVSTGYMHNHARMWFASIWIFTLRLPWELGADFF 176

Query: 377 MSQLLDGDLASNNGGWQWAAS 397
           +  LLDGD ASN   W+W A 
Sbjct: 177 LRHLLDGDAASNTLSWRWVAG 197


>gi|307101791|gb|EFN50420.1| hypothetical protein CHLNCDRAFT_29124 [Chlorella variabilis]
          Length = 92

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 1/84 (1%)

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R + R+L   +P     +  +     + W  D  L +AW+QG TG+P++DAAMR++   G
Sbjct: 1   RRYSRYLSFHFP-FTHERSLLEHLRAVPWRFDQRLFKAWRQGRTGYPLVDAAMREVWGTG 59

Query: 348 WMHNRLRMITASFLVKDLLVDWRI 371
           WMHNR+R++ ASF+VK+LL+ W++
Sbjct: 60  WMHNRMRVVAASFMVKNLLLPWQV 83


>gi|330825550|ref|YP_004388853.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans
           K601]
 gi|329310922|gb|AEB85337.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans
           K601]
          Length = 516

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 13/243 (5%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           G      +L  F   +  +Y      P  A    S+LSPYL++G L  R+     +   V
Sbjct: 194 GRTPGQQVLHDFLHMRGAWYRGGISSPLTAPTACSRLSPYLALGCLGMREVVQATQLRQV 253

Query: 269 DL-------LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            L         + + G  ++++ + W   +   +   P +        +    E+  +  
Sbjct: 254 QLKSADDPRAARLRQGLAAFMSRMHWHCHFIQKLESEPELEWRNLHRGYDGLREYAWNPA 313

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
              A + G TG+PI+DA +  L   GW++ R+R +  S     L + WR    +   Q L
Sbjct: 314 HFDALQAGQTGWPIVDACVAMLRETGWVNFRMRAMLVSVAAYPLWLHWRPVGLWLARQFL 373

Query: 382 DGDLASNNGGW-QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           D +   +   W Q     G   +   R++NP  Q +  DP G F+R WLP L  VP  ++
Sbjct: 374 DYEPGIH---WSQMQMQAGTTGINTTRVYNPIKQAQDHDPHGVFVRRWLPALRRVPDAWL 430

Query: 441 HAP 443
             P
Sbjct: 431 FEP 433


>gi|78211770|ref|YP_380549.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp.
           CC9605]
 gi|78196229|gb|ABB33994.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           CC9605]
          Length = 303

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 16/170 (9%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            + LSPY+  GVL+  +  + + E      I+ +      +NEL WR+F++ +      +
Sbjct: 71  VTGLSPYIRHGVLTLAEVRDSVFER-----IRNRDEGGKLINELGWRDFWQRMW-----L 120

Query: 302 CMGKPFIPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +G       E  +   D+      L    + G TG   +D    QL + GW+HN  RM 
Sbjct: 121 DLGDGIHDDQEPFKTGHDAGAYAQELPADVRAGTTGLACMDGFRDQLVSTGWLHNHARMW 180

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
            A++LV    V W+ G ++F+  LLDGD ASN+  WQW AST +   PYF
Sbjct: 181 MAAWLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASTFSHK-PYF 229


>gi|77964002|gb|ABB13342.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
          Length = 304

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 6/93 (6%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PT++
Sbjct: 3   LLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEW 62

Query: 440 IH----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           IH    AP S L    + L  NYPLPIV+  +A
Sbjct: 63  IHHPWDAPESVLQAAGIELGSNYPLPIVELDEA 95


>gi|22298095|ref|NP_681342.1| putative deoxyribodipyrimidine [Thermosynechococcus elongatus BP-1]
 gi|22294273|dbj|BAC08104.1| tll0552 [Thermosynechococcus elongatus BP-1]
          Length = 276

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 10/167 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            + LS YL  GV+S     +R+++     L+   S A + L +L WR++++ L A +   
Sbjct: 76  VTGLSAYLRHGVISLAAVRDRVRQ-----LVDDPSEAEALLQQLAWRDYWQRLYAHWGDR 130

Query: 302 CMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P+      +++  D  L  A     TG   +DA    L   G++HN  R+  A+
Sbjct: 131 LWQDIEPYKTGWSAVDYATD--LPAALVAAETGLACMDAFSSDLQRTGYLHNHARLWLAA 188

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           ++V    V W+ G  +F+  LLDGD ASNN  WQW AST +   PYF
Sbjct: 189 YVVHWCRVRWQAGAAWFLQHLLDGDPASNNLSWQWVASTFSHK-PYF 234


>gi|88808065|ref|ZP_01123576.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           7805]
 gi|88788104|gb|EAR19260.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           7805]
          Length = 309

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 33/243 (13%)

Query: 177 LPVPAIR-LTGPVTPSNIPRFF------------DYPFQAIDPMFPI--GEQNALHILRK 221
           LP+P I  L+ P  P ++PR              ++P  A  P+  I  G Q A   L++
Sbjct: 3   LPLPPITPLSWPEQPGDLPRDLPDRDALDRRLANEFP-SAQGPLSGIQGGRQAAESQLQR 61

Query: 222 FCKEKVYYYVEQRDIPAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
              ++   Y   R+   ++G  ++LSP++  GVL+  +    +  +  D       G+  
Sbjct: 62  MEAKR---YGRSRN--HLKGAVTRLSPWIRHGVLTLAEIREAVFAQLRDRGQGRDDGS-K 115

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-----SHLLQAWKQGYTGFPI 335
            +NEL WR+F++ +        +G       E+++   D       L    ++G TG   
Sbjct: 116 LINELGWRDFWQRMWG-----DLGDGIHESQEELKTGHDPSSYSRELPDDVREGRTGLAC 170

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +D    +L + GW+HN  RM  A++LV    V W+ G ++F+  LLDGD ASN+  WQW 
Sbjct: 171 MDGFSEELVSSGWLHNHARMWMAAYLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWV 230

Query: 396 AST 398
           AS+
Sbjct: 231 ASS 233


>gi|148654199|ref|YP_001274404.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus sp.
           RS-1]
 gi|148566309|gb|ABQ88454.1| Deoxyribodipyrimidine photolyase-like protein [Roseiflexus sp.
           RS-1]
          Length = 270

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 12/172 (6%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             + LSPY+  GVLS  +    +++  +  + +P   A   ++EL WR++++ L      
Sbjct: 65  AVTHLSPYIRYGVLSLAE----VRDAALSRVRRPADAA-KLVSELGWRDYWQRLYERLGD 119

Query: 301 VCM--GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                 +P+       E+   + L     +G TG   +DA  R L + G++HN  RM  A
Sbjct: 120 DVWRDQEPYKTGYRADEYA--AELPDDIIEGRTGLACMDAFSRDLRSTGYLHNHARMWLA 177

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           S++V    V W+ G  +F+  LLDGD ASNN  WQW AST +   PY  IFN
Sbjct: 178 SYVVHWRRVAWQAGARWFLEHLLDGDPASNNLSWQWVASTFSHK-PY--IFN 226


>gi|294084366|ref|YP_003551124.1| hypothetical protein SAR116_0797 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663939|gb|ADE39040.1| hypothetical protein SAR116_0797 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 267

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 20/172 (11%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S+LSPY+  G++S     N ++   + +  +P+     ++ EL WR++++         
Sbjct: 65  VSRLSPYIRHGIIS----LNDVRNHALSISGEPQQTE-KFIQELAWRDYWQRRY------ 113

Query: 302 CMGKPFIPWTE----KIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P   W +    K  +  D +   L    + G TG  +ID  + +L T G++HN  R
Sbjct: 114 -RQNPHDIWHDIEAYKTGFTADDYAETLPADIEAGETGVAVIDHFIHELCTTGYLHNHAR 172

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           M  A+++V    + W+ G ++F+  LLDGD ASNN  WQW AST  +  PYF
Sbjct: 173 MYVAAYIVHWRRIKWQAGAQWFLHHLLDGDPASNNLSWQWVASTFANK-PYF 223


>gi|317968593|ref|ZP_07969983.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
          Length = 302

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 43/240 (17%)

Query: 190 PSNIPRFFD------------YPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRD 235
           P ++PR F             +P +A   + PI  G   A  +LR+   E+   Y + R+
Sbjct: 9   PGDLPRQFSDRSALECTLQQLFP-EASGSLSPIQGGRSQADALLRRVQPER---YAKARN 64

Query: 236 IPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
              + G  ++LSPY+  G +S  +       + V    K +  +   +NEL WR++++ L
Sbjct: 65  F--LSGPVTRLSPYIRHGAISLAEV-----RDAVFARTKQRQASEKLINELGWRDYWQRL 117

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK--------QGYTGFPIIDAAMRQLNTI 346
                   +G     W+++ E  K  H   A+         +G TG   +D   ++L   
Sbjct: 118 WE-----QLGDGI--WSDQ-EPLKTGHHPGAYAPELPADITEGRTGLACMDGFSQELQQT 169

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GW+HN  RM  A+++V    + W+ G ++F+  LLDGD ASNN  WQW AS+ +   PYF
Sbjct: 170 GWLHNHARMWLAAYVVHWRRIRWQAGAQWFLRHLLDGDPASNNLSWQWVASSFSHK-PYF 228


>gi|87123060|ref|ZP_01078911.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           RS9917]
 gi|86168780|gb|EAQ70036.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           RS9917]
          Length = 313

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 16/172 (9%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYP 299
            ++LSP++  GVLS  +  + +   F+ L  + +S       +NEL WR+F++ +     
Sbjct: 98  VTRLSPWIRHGVLSLAEVRDAV---FLQLQKRGQSRDDGAKLINELGWRDFWQRMWQ--- 151

Query: 300 SVCMGKPFIPWTEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +G       E+++   D       L +  + G TG   IDA   +L   GW+HN  R
Sbjct: 152 --ALGDRIHDSQEELKTGHDPASYRVELPEDIRDGRTGLACIDAFRAELVHSGWLHNHAR 209

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           M  A+++V    V W+ G ++F+  LLDGD ASN+  WQW AS+ +   PYF
Sbjct: 210 MWLAAYVVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASSFSHK-PYF 260


>gi|113954353|ref|YP_729493.1| blue light photoreceptor cryptochrome [Synechococcus sp. CC9311]
 gi|113881704|gb|ABI46662.1| blue light photoreceptor cryptochrome [Synechococcus sp. CC9311]
          Length = 315

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 2/164 (1%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LSPY+  G+L+  +  + +  +      +  +G    +NEL WR+F++ +        
Sbjct: 78  TRLSPYIRHGILTLAEVRDAVFSQLKQTSQRRDNGE-KLINELGWRDFWQRMWLDLGDRI 136

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                   T       +  L    ++G T    +D    +L T GW+HN  RM  A++LV
Sbjct: 137 HDDQEDHKTGHAASEYEQGLPDDIREGRTNLACMDGFRNELVTQGWLHNHARMWMAAYLV 196

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
               V WR+G ++F+  LLDGD ASN+  WQW AS  +   PYF
Sbjct: 197 HWRRVHWRVGADWFLEHLLDGDPASNHLSWQWVASCFSHK-PYF 239


>gi|67906774|gb|AAY82837.1| predicted deoxyribodipyrimidine photolyase [uncultured bacterium
           MedeBAC46A06]
          Length = 287

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 18/196 (9%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             ++LSPY+  G+LS     + ++   + ++  PK  A  ++ EL WR++++ L   +P 
Sbjct: 84  AVTRLSPYIRHGILS----LDEVRNAALAMVDDPKQ-AEKFIQELAWRDYWQRLYLAHPE 138

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                     T     + D  L      G TG   ID  +  L   G++HN  RM  A++
Sbjct: 139 WIWADVESYKTGFDSSDYDPDLPDDIAAGETGVACIDQFIATLVETGYLHNHARMYLAAY 198

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            V    V W+ G  +F+  L+D D ASNN  WQW AST ++  PY  IFN          
Sbjct: 199 TVHWRRVSWQAGARWFLGHLIDADPASNNLSWQWIASTFSNK-PY--IFN---------- 245

Query: 421 QGTFIRHWLPELNNVP 436
                ++  PE+N +P
Sbjct: 246 LENVAKYSGPEINTIP 261


>gi|77964000|gb|ABB13341.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
          Length = 301

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 6/92 (6%)

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PT++I
Sbjct: 1   LDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWI 60

Query: 441 H----APHSWLDKNDLSL--NYPLPIVDHKKA 466
           H    AP S L    + L  NYPLPIV+  +A
Sbjct: 61  HHPWDAPESVLQAAGIELGSNYPLPIVELDEA 92


>gi|56752236|ref|YP_172937.1| deoxyribodipyrimidine photolyase [Synechococcus elongatus PCC 6301]
 gi|56687195|dbj|BAD80417.1| similar to deoxyribodipyrimidine photolyase [Synechococcus
           elongatus PCC 6301]
          Length = 305

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 31/171 (18%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             ++LSPY+  GVLS     +R+  +     I+ +S     + EL WR++++ +      
Sbjct: 83  AVTRLSPYIRHGVLSLATVRDRVLAQ-----IRQRSDGEKLITELAWRDYWQRI------ 131

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAW-------------KQGYTGFPIIDAAMRQLNTIG 347
                 +  W ++I W         W             +   TG   +D   R+L   G
Sbjct: 132 ------YWEWGDRI-WRDREPYKTGWDSQQYSEALPPDLQAAETGLACMDRFSRELKETG 184

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           ++HN  RM  A++LV    + W+ G  +F+  LLDGD ASNN  WQW AST
Sbjct: 185 YLHNHARMWMAAYLVHWRRIRWQAGARWFLQHLLDGDPASNNLSWQWVAST 235


>gi|254442576|ref|ZP_05056052.1| hypothetical protein VDG1235_809 [Verrucomicrobiae bacterium
           DG1235]
 gi|198256884|gb|EDY81192.1| hypothetical protein VDG1235_809 [Verrucomicrobiae bacterium
           DG1235]
          Length = 423

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 44/261 (16%)

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           AL+ L+ F       Y   R+     G     SQLSPY+  G++S        +EE V  
Sbjct: 24  ALNRLKDFVVRAGSDYRANRNHDGGAGQHVYVSQLSPYIRNGLIS--------EEEVVAT 75

Query: 271 LIKPKSGAFS--WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           ++K  + A +  +L E+ WR +++  +   P        + WT    + +D  +L+    
Sbjct: 76  ILKSHTFAEAEKFLQEVFWRVYWKGYLENRP--------VLWTR---YREDLEILKNKAA 124

Query: 329 GYTGFPIIDAAM----------RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
            Y  +P  D+A           ++L   G++HN  RM  AS  +  L + W++G ++F+ 
Sbjct: 125 DYQDYPRADSASTGIKCFDTWSQELQETGYLHNHTRMWFASIWIFTLKLPWQLGADFFLR 184

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            LLDGD ASN   W+W A        Y           R      F  +  P++N + TQ
Sbjct: 185 HLLDGDPASNTLSWRWVAGLHTKGKNYL---------ARSSNIAKFTANRFPDVNGLATQ 235

Query: 439 YIHAPHSWLDKNDLSLNYPLP 459
                 S  D    S   PLP
Sbjct: 236 ADAIEESHPDSPITSTELPLP 256


>gi|218198693|gb|EEC81120.1| hypothetical protein OsI_23997 [Oryza sativa Indica Group]
          Length = 133

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 45/64 (70%)

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D ASN G W
Sbjct: 69  YPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGNW 128

Query: 393 QWAA 396
            + A
Sbjct: 129 TYGA 132


>gi|81300676|ref|YP_400884.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus
           elongatus PCC 7942]
 gi|81169557|gb|ABB57897.1| Deoxyribodipyrimidine photo-lyase family protein [Synechococcus
           elongatus PCC 7942]
          Length = 293

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 31/171 (18%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             ++LSPY+  GVLS     +R+  +     I+ +S     + EL WR++++ +      
Sbjct: 71  AVTRLSPYIRHGVLSLATVRDRVLAQ-----IRQRSDGEKLITELAWRDYWQRI------ 119

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAW-------------KQGYTGFPIIDAAMRQLNTIG 347
                 +  W ++I W         W             +   TG   +D   R+L   G
Sbjct: 120 ------YWEWGDRI-WRDREPYKTGWDSQQYSEALPPDLQAAETGLACMDRFSRELKETG 172

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           ++HN  RM  A++LV    + W+ G  +F+  LLDGD ASNN  WQW AST
Sbjct: 173 YLHNHARMWMAAYLVHWRRIRWQAGARWFLQHLLDGDPASNNLSWQWVAST 223


>gi|78183829|ref|YP_376263.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
 gi|78168123|gb|ABB25220.1| Deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp.
           CC9902]
          Length = 298

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 14/208 (6%)

Query: 202 QAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-SQLSPYLSIGVLSPRQ 258
           +A   + PI  G + A   +RK     V  Y   R+   + G  ++LSPY+  GV +  +
Sbjct: 33  EASGAISPIRGGRRAAEKQIRKM---DVKRYARSRN--HVNGAVTRLSPYIRHGVFTLAE 87

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
               +++     + K   G+   +NEL WR+F++ +                T     + 
Sbjct: 88  ----VRDAVFQGISKRDDGS-KLINELGWRDFWQRMWQDLGDRIDDDQEAFKTGHSAASY 142

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
              L    + G TG   +D    +L + GW+HN  RM  A++LV    V W+ G ++F+ 
Sbjct: 143 SRELPDDVRDGCTGLACMDGFREELVSTGWLHNHARMWMAAWLVHWRHVHWKAGADWFLE 202

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYF 406
            LLDGD ASN+  WQW AST +   PYF
Sbjct: 203 HLLDGDPASNHLSWQWIASTFSHK-PYF 229


>gi|148238603|ref|YP_001223990.1| FAD binding domain-containing protein [Synechococcus sp. WH 7803]
 gi|147847142|emb|CAK22693.1| FAD binding domain of DNA photolyase [Synechococcus sp. WH 7803]
          Length = 340

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 12/170 (7%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            ++LSP++  GVL+  +    +  +  D       G    +NEL WR+F++ + +     
Sbjct: 109 VTRLSPWIRHGVLTLAEIREVVFAQLRDRGQGRDDGG-KLINELGWRDFWQRMWSD---- 163

Query: 302 CMGKPFIPWTEKIEWNKD-----SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +G       E+++   D       L    ++G TG   +D     L + GW+HN  RM 
Sbjct: 164 -LGDSIHESQEELKTGHDPASYSRELPDDVREGRTGLACMDGFRDDLVSSGWLHNHARMW 222

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
            A++LV    V W+ G ++F+  LLDGD ASN+  WQW AS+ +   PYF
Sbjct: 223 MAAYLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASSFSHK-PYF 271


>gi|224005941|ref|XP_002291931.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972450|gb|EED90782.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 485

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 28/174 (16%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LSPYL  GVLSP++                K G      +L+WR++          + 
Sbjct: 223 TKLSPYLRWGVLSPQRA--------------AKCGVRR--RDLLWRDWSHLCYGLVGPLR 266

Query: 303 MGKPFIPWT----------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            G   + +           +K+  +    L + W  G TG+ ++DA MRQL   GWM  +
Sbjct: 267 RGDAVLEYMNKACSDDTSDDKLNADNKDELFRLWCVGNTGYELVDAGMRQLWAEGWMSRK 326

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
            R++ A+ LV+ + V W++G ++F   L+D D A N   WQ A   G D  P++
Sbjct: 327 ARLLAAACLVEGMGVSWQLGRDWFAYTLIDHDPAINEMMWQNAGLCGVD--PFY 378


>gi|300712647|ref|YP_003738460.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3]
 gi|299126331|gb|ADJ16669.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3]
          Length = 196

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 68/145 (46%), Gaps = 12/145 (8%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR L   G+++ R+R + ASF    L   WRIG ++    L+D D A N    QW    G
Sbjct: 1   MRALTETGFLNFRMRAMVASFFSYILKQWWRIGADFMYYHLIDADPAINYA--QWQMQCG 58

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP---------HSWLDKN 450
                  RI+NP  Q +  DP G FIR ++PEL N+ T ++  P          S +   
Sbjct: 59  LVGCHPNRIYNPRKQVRENDPAGEFIREYVPELQNLSTTFLERPEKTPLHVQEQSGVTIG 118

Query: 451 DLS-LNYPLPIVDHKKACHHTLNQY 474
           D S   YP PIVD ++       Q+
Sbjct: 119 DTSDAVYPYPIVDFEREATLAREQF 143


>gi|116071562|ref|ZP_01468830.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
 gi|116065185|gb|EAU70943.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
          Length = 298

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 6/164 (3%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LSPY+  GV +  +       + V   I  +      +NEL WR+F++ +        
Sbjct: 72  TRLSPYIRHGVFTLAEV-----RDAVFRGISKRDDGSKLINELGWRDFWQRMWQNLGDRI 126

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                   T     +    L    + G TG   +D    +L + GW+HN  RM  A++LV
Sbjct: 127 NDDQEELKTGHSAASYSRELPDDVRDGCTGLACMDGFRNELVSTGWLHNHARMWMAAWLV 186

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
               V W+ G ++F+  LLDGD ASN+  WQW AST +   PYF
Sbjct: 187 HWRHVHWKAGADWFLEHLLDGDPASNHLSWQWIASTFSHK-PYF 229


>gi|254449813|ref|ZP_05063250.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
 gi|198264219|gb|EDY88489.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
          Length = 405

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 8/182 (4%)

Query: 248 YLSIGVLSPRQCWNRLKEEFV---DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           + ++ VLSP  C   L E  V    L +     A +++ E++WR +++  +   P V   
Sbjct: 39  HTAVSVLSPYICRRLLCEREVVAAALAVHGPDDARAFIEEVVWRGYFKGWLERRPQVWAS 98

Query: 305 KPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                  +     +D  L   ++  + G +G    D    +L   G++HN  RM  AS  
Sbjct: 99  YVSGLNADLESLKRDRQLRRDVELAETGQSGLGYFDTWAHELVNTGYLHNHARMWFASIW 158

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFN-PTIQGKRFD 419
           +  L + WR+G ++F   LLDGD A+N   W+WAA       PY  R  N  T  G RF+
Sbjct: 159 IFTLGLPWRLGADFFYRHLLDGDAAANTLNWRWAAGLHTRGKPYPARAENIATFTGGRFN 218

Query: 420 PQ 421
           P+
Sbjct: 219 PR 220


>gi|213158207|ref|YP_002320258.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057]
 gi|213057367|gb|ACJ42269.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057]
          Length = 193

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 4/172 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  +QK
Sbjct: 7   LIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L +H
Sbjct: 65  ELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNRH 124

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVP 180
                 F D  + P  SI N + Q Y+V++ F+KA    L  + L +  PVP
Sbjct: 125 GKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVP 176


>gi|313217172|emb|CBY38333.1| unnamed protein product [Oikopleura dioica]
          Length = 571

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 114/261 (43%), Gaps = 37/261 (14%)

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW---NRLKEEFVDLLIKPKSGAFSWLNEL 285
           +++  R+  +      ++PY+  G LS RQ +   NR+ EE     I+ +          
Sbjct: 287 HWLINRETQSTPDLRAVTPYIVQGCLSVRQVYHDVNRVYEE-----IQGEKATLKLHFAA 341

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           + R+F  +L           P       + ++ D   ++ W +G TGFP +DA MRQ  T
Sbjct: 342 LHRDFLYNLAVV--------PNDDLNLDVSFDCDEARIRTWLEGNTGFPWVDAVMRQFRT 393

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGE--EYFMSQLLDGDLASNNGGWQWAASTG---N 400
            GW+   LR     FL + +L  W+  E    FMS+    DL    G   WA+ TG    
Sbjct: 394 EGWVAPTLRQAVLWFLTRGVL--WQTPEIAVQFMSEFCLLDLPLAKGYAAWASGTGAWCE 451

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           + V +        +  + DP   +IR W+PE+ N+  + IH P  W  +      Y   I
Sbjct: 452 NDVAH--------KCPKVDP--NYIRQWVPEVANLTDEQIHEP--WTTQT--PTEYVSLI 497

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
           V HK +   + ++Y+   K+S
Sbjct: 498 VQHKISHRRSESKYHETLKRS 518


>gi|85709235|ref|ZP_01040300.1| DNA photolyase-like protein [Erythrobacter sp. NAP1]
 gi|85687945|gb|EAQ27949.1| DNA photolyase-like protein [Erythrobacter sp. NAP1]
          Length = 412

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 18/196 (9%)

Query: 213 QNALHILRKFCKEKVYYYVEQRD----IPA---IQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           +  L  L +F       Y   R+    +P    +   SQLSP+L  G+LS R+       
Sbjct: 8   KAGLDRLAEFAPRSGSAYASNRNYDDGVPEDGMLSNVSQLSPWLHAGLLSEREV------ 61

Query: 266 EFVDLLIKPKSG-AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
             +  L +   G A  ++ E+ WR +++  +   PSV            I    +S L +
Sbjct: 62  -ILAALNEHGPGKAEKFIAEVFWRVYFKGYLEQRPSVWDAYKQGRDGALIAVENNSGLAK 120

Query: 325 AWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
            +++   G TG    D  +R+L   G++HN  RM  AS  +  L +DW++G ++F+  L+
Sbjct: 121 VYEEAVAGRTGIEAFDQWVRELVQTGYLHNHARMWFASVWIFTLKLDWQLGADFFLRHLM 180

Query: 382 DGDLASNNGGWQWAAS 397
           DGD ASN   W+W A 
Sbjct: 181 DGDAASNTLSWRWVAG 196


>gi|163731524|ref|ZP_02138971.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter litoralis
           Och 149]
 gi|161394978|gb|EDQ19300.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter litoralis
           Och 149]
          Length = 404

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 33/217 (15%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNR 262
           MF      AL  L  F  +    Y  +R+     G     S LSPYL   +++       
Sbjct: 8   MFLPTHTAALERLSAFVPQAGRDYATRRNYDFGPGNHTHVSGLSPYLRCRLIT------- 60

Query: 263 LKEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE-----KIE 315
            + E V+ +++  S   A  ++ E+ WR +++  +   P+V        WT+        
Sbjct: 61  -ESEVVNAVLQRHSIAAAEKFMQEVFWRTYWKGWLELRPAV--------WTQYQVALDQA 111

Query: 316 WN---KDSHLLQAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
           WN     + L   W+   +G TG    DA   +L   G++HN  RM  AS  +  L + W
Sbjct: 112 WNDVQTQAGLRARWENACRGETGIDCFDAWAHELVETGYLHNHARMWFASIWIFTLELPW 171

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
            +G ++F+  LLDGD ASN  GW+W A        Y 
Sbjct: 172 ELGADFFLRHLLDGDPASNTLGWRWVAGIQTQGKTYL 208


>gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus]
          Length = 359

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 16/162 (9%)

Query: 211 GEQNALHILRKFCKEK--VYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           GE   L  L +   ++  V  + + R +P   +  T+ LSPY S+G LS R  + RL   
Sbjct: 201 GETEGLQRLERHLTDQGWVTSFTKPRTVPNSLLPSTTGLSPYFSMGCLSVRTFFYRLS-- 258

Query: 267 FVDLLIKPKSGAF---SWLNELIWREFYRHLMAFYPSVCM--GKPFIPWTEKIEWNKDSH 321
             ++  + K  +    S   +L+WREF+  + +  P+     G P      +I W KD+ 
Sbjct: 259 --NIYAQAKHHSLPPVSLQGQLLWREFFYTVASATPNFTQMAGNPI---CLQICWYKDAE 313

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            L  WK   TGFP IDA M QL   GW+H+  R   A FL +
Sbjct: 314 RLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 355


>gi|156744165|ref|YP_001434294.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156235493|gb|ABU60276.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus
           castenholzii DSM 13941]
          Length = 270

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 32/180 (17%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM------- 295
           + LSPY+  GVLS  +       +     ++  + A   ++EL WR++++ L        
Sbjct: 67  THLSPYIRHGVLSLAEV-----RDAALSRVRRSADAAKLVSELGWRDYWQRLYERLGDNV 121

Query: 296 -----AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
                ++    C G       + I             +G TG   IDA   +L   G++H
Sbjct: 122 WRDQESYKTGYCAGDYAAELPDDI------------IEGRTGLACIDAFSHELRATGYLH 169

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           N  RM  A+++V    + W+ G  +F+  LLDGD ASNN  WQW AST +   PY  IFN
Sbjct: 170 NHARMWLAAYVVHWRRIRWQAGARWFLEHLLDGDPASNNLSWQWVASTFSHK-PY--IFN 226


>gi|226494726|ref|NP_001146620.1| hypothetical protein LOC100280217 [Zea mays]
 gi|219888051|gb|ACL54400.1| unknown [Zea mays]
          Length = 421

 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 166/421 (39%), Gaps = 40/421 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKAL----YAACHNSDAKVIAVFIATPEQWRQHGISAR 56
           M+A TA +  ++W R  LR+ DN AL          + A++  VF+  P   R   ++A 
Sbjct: 1   MEAATAATAAMMWFRKGLRVHDNPALDAARRHGAGAASARLYPVFVLDPRYLRPDAVAAS 60

Query: 57  QS---------HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107
                       F+  SL  +   L +     +       DD  + + +      + KL 
Sbjct: 61  PGSARAGVARIRFLLESLSDLDARLRRL--GSRLLLLRARDDVADAVCAALKDWNIGKLC 118

Query: 108 YNRQYEINEVRRDK-LLEKRLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKAL 165
           +    E   + RDK + +  L   +   +     L  P  I+  +  +    Y  F    
Sbjct: 119 FESDTEPYALARDKKVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFVSIA 178

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRK 221
            +    A      +P +  TG      +P   +  +  I     P F  GE  AL  +++
Sbjct: 179 GEPPAPAMEEYSELPPLGDTGEYELLPVPTVEELGYGDISQEEIPPFHGGETEALRRMKE 238

Query: 222 FC--KEKVYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
               KE V  + + +  P+      T+ LSPYL  G LS R  ++ +++    +    K 
Sbjct: 239 SLQNKEWVAKFEKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHCIQDVHRSVRNHTKP 298

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFI------PWTEKIEWNKDSHLLQAWKQGY 330
              S   +L+WR+F      FY +V  G P           ++I W+++  L  AW+ G 
Sbjct: 299 -PVSLTGQLLWRDF------FY-TVSYGTPNFDRMKGNKICKQIPWSENEDLFVAWRDGQ 350

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG+P IDA M QL   GWMH+  R   A FL +  +     GE       L+  L   NG
Sbjct: 351 TGYPWIDAIMIQLRNWGWMHHLARHSVACFLTRGDMCCRCEGESSSRLHPLNSHLHPLNG 410

Query: 391 G 391
           G
Sbjct: 411 G 411


>gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica]
          Length = 377

 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 153/391 (39%), Gaps = 43/391 (10%)

Query: 7   MSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      SD  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAIHWFRKGLRLHDNPALKECIQGSDT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQ---KSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +    + L+ +  V +      F     EW        ++++L      E     RD 
Sbjct: 60  EDLDANLRKLNSRLFVIRGQPADVFPRLFKEW--------KISRLSIEYDSEPFGKERDA 111

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
            ++K      +      S  L     L+  +++     P      Q L+ + +   +PV 
Sbjct: 112 AIKKLASEAAVEVIVRISHTL---YDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVE 168

Query: 181 AI------RLTGPVTPS-----NIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEK 226
            I      + T PV+        +P   +  F        ++P GE  AL  L +  + K
Sbjct: 169 TITAEVMGKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERK 228

Query: 227 VYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +    +R        +  T+ LSPYL  G LS    + +L + +  ++ K  S   S  
Sbjct: 229 AWVANFERPRMNANSLLASTTGLSPYLRFGCLSCCLFYFKLTDLY-KMVKKNSSPPLSLY 287

Query: 283 NELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +L+WREF+       P      G P      +I W+++   L  W +G TGFP IDA M
Sbjct: 288 GQLLWREFFYTAATNNPRFDKMEGNPI---CVQIPWDRNPEALAKWAEGRTGFPWIDAIM 344

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWR 370
            QL   GW+H+  R   A FL + DL +  R
Sbjct: 345 TQLRQEGWIHHLARHAVACFLTRGDLWISGR 375


>gi|311747654|ref|ZP_07721439.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
 gi|126575640|gb|EAZ79950.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
          Length = 365

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 21/226 (9%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             +QLSPY+S GV+S  Q +     E++  L  P S     + EL WR++++ +      
Sbjct: 33  AVTQLSPYISRGVISTNQVF-----EYIKSLNFPWSQCEKLVQELAWRDYWQQVW----- 82

Query: 301 VCMGKPFIPWTEKIEWNKDSHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +  G+      +  +    +H +  A  Q  TG   +D  +  L   G+MHN +RM  AS
Sbjct: 83  LAKGEAIFEDLKNEQKPVQNHQIPSAIIQAKTGIEAVDQGILDLYQTGYMHNHMRMYVAS 142

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
                    W    ++  S LLDGDLASN+  WQW A   ++      + N     K F+
Sbjct: 143 ICCNIANSHWLNPAKWMYSHLLDGDLASNHLSWQWVAGAFSNKK---YLANQENINKYFN 199

Query: 420 PQ--GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
            +  GTF+     E + + T     P   L   + +    LP +D+
Sbjct: 200 SEQKGTFLDVAYHEFDELKT-----PELLLQTEEFTTKTTLPSIDN 240


>gi|298364134|gb|ADI79210.1| photolyase [Halococcus hamelinensis]
          Length = 263

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 102/242 (42%), Gaps = 14/242 (5%)

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSI 147
           D  E L     +     +F+N  Y      RD+ +E  L    I  ++F D+V   PG+I
Sbjct: 20  DPAEELPRLADEHGAEAVFWNHDYTGLARERDRRVESALDDADIDHETFHDAVHHEPGAI 79

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAI 204
             +    Y V++ F K  +    ++   S P P   A+R      P++    FD P  A 
Sbjct: 80  TTNDGDPYAVFSYFGKKWLDREKES---SYPPPNGDALRAGDDDLPTSDDLGFDEP-DAT 135

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
            P    G + A   L  FC+  +  Y  +R+ PA  GTS+LS  L  G +  R+   R+ 
Sbjct: 136 PPE--AGTEAARDRLDSFCEAAIGEYETEREYPARAGTSRLSQDLKYGTIGIREVSERVA 193

Query: 265 EEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
            E  D       +    ++  EL WREFY  ++ + P V   + +  +   IEW +    
Sbjct: 194 -EAADRADGDDVRESIEAYREELAWREFYTQVLRYNPEVVT-ENYSSYENPIEWRESDDD 251

Query: 323 LQ 324
           L 
Sbjct: 252 LD 253


>gi|254461876|ref|ZP_05075292.1| deoxyribodipyrimidine photo-lyase, putative [Rhodobacterales
           bacterium HTCC2083]
 gi|206678465|gb|EDZ42952.1| deoxyribodipyrimidine photo-lyase, putative [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 408

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 97/236 (41%), Gaps = 15/236 (6%)

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR--DIPAIQGT--SQLSPYLSI 251
           F D P    D +F       L  L  F      +Y  QR  D+ A   +  S LSP++  
Sbjct: 12  FDDLPRLNKDVVFTPTRAAGLAQLETFVSRMGDHYTAQRNYDLGAQDRSTASALSPWIRH 71

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
            +++  +   R       L     S A  ++ E+ WR +++  +  +PSV          
Sbjct: 72  RLITEEEVLTRA------LARHSPSAASKFVQEVFWRGYFKGWLEQHPSVWKAFRHDLRL 125

Query: 312 EKIEWNKDSHLLQAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                  D  L   +    +G +G    D  + +L   G++HN  RM  AS  +  L + 
Sbjct: 126 AYARLENDEVLKHDYTDATEGRSGIACFDHWVNELVQTGYLHNHARMWFASIWIFSLRLP 185

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFN-PTIQGKRFDPQG 422
           W++G ++FM  LLDGD ASN   W+W          Y  R  N     G RF+P+G
Sbjct: 186 WQLGADFFMQHLLDGDPASNTLSWRWVGGLHTKGKTYLARASNIAKYTGGRFNPEG 241


>gi|161138108|gb|ABX58026.1| cryptochrome 1b [Triticum aestivum]
          Length = 76

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 46/72 (63%)

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G +YF   LLD DL S+  GWQ+ + +  DS     I NP ++G +FDP G ++R WLPE
Sbjct: 2   GMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDPHGEYVRRWLPE 61

Query: 432 LNNVPTQYIHAP 443
           L  +PT++IH P
Sbjct: 62  LARLPTEWIHHP 73


>gi|254431208|ref|ZP_05044911.1| probable deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
 gi|197625661|gb|EDY38220.1| probable deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
          Length = 440

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 84/196 (42%), Gaps = 54/196 (27%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL------------------ 282
             + LSPY+  GVLS               L + +   F WL                  
Sbjct: 57  AVTGLSPYIRHGVLS---------------LAEVRDAVFGWLRQRGYGEPGRRAEAQQLA 101

Query: 283 ----NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK--------QGY 330
               NEL WR++++ L        +G     W + +E  +  H  +A+         +  
Sbjct: 102 GKLINELGWRDYWQRLWRL-----LGDGI--WHD-LEPLRTGHPAEAYAAELPPDITEAR 153

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG   IDA   +L T GW+HN  RM  AS++V    V W+ G  +F+  LLDGD ASNN 
Sbjct: 154 TGLACIDAFAAELRTSGWLHNHARMWLASYVVHWRRVRWQAGARWFLQHLLDGDPASNNL 213

Query: 391 GWQWAASTGNDSVPYF 406
            WQW AS+ + S PY 
Sbjct: 214 SWQWVASSFS-SKPYI 228


>gi|68164596|gb|AAY87325.1| predicted deoxyribodipyrimidine photolyase [uncultured bacterium
           BAC17H8]
          Length = 269

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 12/172 (6%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             ++LSPY+  GVLS     + ++   V  +  P+  A  ++ EL WR++++ +   +P 
Sbjct: 66  AVTRLSPYIRHGVLS----LDEVRNHAVAAVRDPRE-AEKFVQELAWRDYWQRIYLAHPD 120

Query: 301 VCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                 + +    +  E+ +D  L        TG   ID     L   G++HN  RM  A
Sbjct: 121 RIWNDVEAYKTGFDAGEYEQD--LPGDVADAETGVACIDQFATMLMETGYLHNHARMYLA 178

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           +++V    V W+ G  +F+  L+D D ASNN  WQW AST ++  PY  IFN
Sbjct: 179 AYIVHWRRVSWQAGARWFLEHLIDADPASNNLSWQWVASTFSNK-PY--IFN 227


>gi|319954988|ref|YP_004166255.1| DNA photolyase fad-binding protein [Cellulophaga algicola DSM
           14237]
 gi|319423648|gb|ADV50757.1| DNA photolyase FAD-binding protein [Cellulophaga algicola DSM
           14237]
          Length = 378

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 78/170 (45%), Gaps = 14/170 (8%)

Query: 239 IQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           I G+ S LSPYL+ GV+S +Q +  L E    +     S A  ++ EL WR++++ +   
Sbjct: 38  IDGSVSYLSPYLARGVISTKQVYQSLLERGFTI-----SNAEKFIQELAWRDYWQQVWIH 92

Query: 298 YPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +      K   P  E  E      + +   +G TG   ID A+  L   G+MHN LRM
Sbjct: 93  KENAIDSDLKHPQPTVENYE------IPKIVAEGTTGIIAIDEAISLLYKTGYMHNHLRM 146

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
             AS         W+I  ++    LLD D ASN   WQW A   ++   Y
Sbjct: 147 YIASIACNVAKSHWKIPAQWMYYHLLDADWASNALSWQWVAGANSNKKYY 196


>gi|225873485|ref|YP_002754944.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC
           51196]
 gi|225793521|gb|ACO33611.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC
           51196]
          Length = 470

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 187/447 (41%), Gaps = 62/447 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIAT---PEQWRQHGISARQSHFIYAS 64
           + W++   R  DN AL  A    +     V+A F A    P    +H +      F+   
Sbjct: 30  VYWMQRAQRALDNPALDMAIRIGNELGLPVVAYFSAISNFPHANLRHYV------FLNQG 83

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLL 123
           L  +++ ++++ + F   +     +S+E L    L++    +    +    E  R  +++
Sbjct: 84  LADIEEDMAERNVTFIVRRPPG--NSLEQL----LEEVQAAMLIGDENPCREPERWRQVI 137

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-----QADLRSLP 178
            KRL   +   + D  V++P      H   ++     F   L Q LV     QA+ +S P
Sbjct: 138 AKRLN--MPYWTIDADVVVPSNLFPKHQYMVHIFRKRFEPLLPQYLVPQPVIQAE-KSWP 194

Query: 179 VP----AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
            P    A  +   VT       FD   + +D  F  G   A  +L+ F   K+  Y ++R
Sbjct: 195 HPKGFEAFDVRHDVTEGWSK--FDRSVKPVD-SFHGGTHEAQRLLKDFVTNKLANYPKER 251

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRH 293
           + P + GTS+LSPYL  G +SP      +++   +     +    S+LNELI WR+   +
Sbjct: 252 NHPELDGTSRLSPYLHFGHISPLTIALAVEDAHKNKHAS-REACDSYLNELIAWRDMAVN 310

Query: 294 LMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIG 347
            + F P     +    W +K   E  +D+    + L+  ++  T   + +AA RQ+   G
Sbjct: 311 FVKFVPGYDSFEAAPEWAQKTLREHARDTRDPIYTLEELERAETCDELWNAAQRQMLHAG 370

Query: 348 WMHNRLRMITASFLVK---DLLVDWR----IGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           WMHN +RM  A  +++     +  W     + + YF    LDG   +   G  WA    +
Sbjct: 371 WMHNYMRMYWAKKILEWSPSPVQAWETCVYLNDRYF----LDGRDPNGYAGIAWAIGGVH 426

Query: 401 DSVPYF--------RIFNPTIQGKRFD 419
           D  P+F        R  +     K+FD
Sbjct: 427 DR-PWFERDIFGTIRYMSGNAAAKKFD 452


>gi|254505021|ref|ZP_05117172.1| hypothetical protein SADFL11_5060 [Labrenzia alexandrii DFL-11]
 gi|222441092|gb|EEE47771.1| hypothetical protein SADFL11_5060 [Labrenzia alexandrii DFL-11]
          Length = 384

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 15/198 (7%)

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYPS 300
           S LSPY+   ++S        ++E V   ++     GA  ++ E+ WR +++  +   P+
Sbjct: 22  SCLSPYIRRRLIS--------EQEVVTAALRNHGLDGAEKFIQEVFWRGYFKGWLERRPA 73

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +          +  +  KDS L QA    + G TG    DA + +L   G++HN +RM  
Sbjct: 74  IWTSYRQGLTADLEDLKKDSGLRQAVARAEAGQTGIDCFDAWVNELIDTGYLHNHVRMWF 133

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFN-PTIQG 415
           AS  +  L + WRIG ++F   LLDGD ASN   W+W A        Y  + +N     G
Sbjct: 134 ASIWIFTLKLPWRIGADFFYRHLLDGDPASNTLSWRWVAGLHTRGKTYEAQAWNIAKFTG 193

Query: 416 KRFDPQGTFIRHWLPELN 433
            RF P+ + +   +  L+
Sbjct: 194 GRFAPESSELETGVKSLD 211


>gi|85374772|ref|YP_458834.1| DNA photolyase-like protein [Erythrobacter litoralis HTCC2594]
 gi|84787855|gb|ABC64037.1| DNA photolyase-like protein [Erythrobacter litoralis HTCC2594]
          Length = 407

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 18/188 (9%)

Query: 219 LRKFCKEKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           L+ F  +    Y E R   D P     SQLSP+L  G+L         + E ++  ++  
Sbjct: 14  LQAFLPDAGRQYAETRNYDDGPGRGNVSQLSPWLHTGLLR--------EHEVLEATLREH 65

Query: 276 SG--AFSWLNELIWREFYRHLMAFYPSV----CMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
               A  + NE+ WR +++  +   PS+    C  +     T       D    +   +G
Sbjct: 66  GARAAEKFGNEIFWRVYFKGYLEQRPSIWRSYCQQRD-TALTALDRNAGDRTAYEEATEG 124

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG    D   ++L   G++HN  RM  AS  +  L +DW +G ++F+  L+DGD ASN 
Sbjct: 125 RTGIGAFDYWAQELIETGYLHNHARMWFASIWIFTLKLDWTLGADFFLRHLVDGDAASNT 184

Query: 390 GGWQWAAS 397
             W+W   
Sbjct: 185 LSWRWVGG 192


>gi|161138102|gb|ABX58023.1| cryptochrome 1a [Triticum aestivum]
 gi|161138104|gb|ABX58024.1| cryptochrome 1a [Triticum aestivum]
 gi|161138106|gb|ABX58025.1| cryptochrome 1a [Triticum aestivum]
          Length = 76

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 45/72 (62%)

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G +YF   LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPE
Sbjct: 2   GMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPE 61

Query: 432 LNNVPTQYIHAP 443
           L  +PT++IH P
Sbjct: 62  LARLPTEWIHHP 73


>gi|331656727|ref|ZP_08357689.1| deoxyribodipyrimidine photo-lyase (DNA
          photolyase)(Photoreactivating enzyme) [Escherichia coli
          TA206]
 gi|331054975|gb|EGI26984.1| deoxyribodipyrimidine photo-lyase (DNA
          photolyase)(Photoreactivating enzyme) [Escherichia coli
          TA206]
          Length = 57

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
          M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I
Sbjct: 1  MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPHQWAAHNVSPRQAELI 55


>gi|99078346|ref|YP_611604.1| deoxyribodipyrimidine photo-lyase family protein [Ruegeria sp.
           TM1040]
 gi|99035484|gb|ABF62342.1| Deoxyribodipyrimidine photo-lyase family protein [Ruegeria sp.
           TM1040]
          Length = 410

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 11/186 (5%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSPYL   +L+  +           L       A  ++ E++WR +++  M   P 
Sbjct: 46  AVSMLSPYLRRRLLTEPEVIA------AALAAHGPQEADKFVQEVLWRGYFKGWMERRPE 99

Query: 301 VCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           V          + +   +D  L   + A + G TG    D   ++L   G++HN  RM  
Sbjct: 100 VWANYITGRDADFVALEEDPGLAIRVNAAETGETGLAYFDTWAKELVRTGYLHNHARMWF 159

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN--PTIQG 415
           AS  +  L + WR+G ++F+  LLDGD ASN   W+W A       PY    +      G
Sbjct: 160 ASLWIFTLKLPWRLGADFFLRHLLDGDPASNTCSWRWVAGLHTRGKPYVAQASNIARFSG 219

Query: 416 KRFDPQ 421
            RF PQ
Sbjct: 220 GRFAPQ 225


>gi|91762575|ref|ZP_01264540.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718377|gb|EAS85027.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 380

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 15/198 (7%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDI---PAIQ-GTSQLSPYLSIGVLSPRQCWNR 262
           +F      A+  L  F ++ +  Y + R+    P+ +  TS LSPY++ G+++       
Sbjct: 2   IFEASRAKAVDKLTNFIEQNLSDYSKLRNFDFGPSNRSNTSCLSPYITHGIINEL----- 56

Query: 263 LKEEFVDLLIKPKSGAFS--WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
              E VD  +K  S A +  ++ E++WR +++  +   P+V           K E+  + 
Sbjct: 57  ---EVVDKSLKKFSFAKNEKFIQEVLWRVYWKGWLELRPNVWSDYLIELGKFKGEFKNNQ 113

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
           + L A  +G T     +  + +L    ++HN  RM  AS  +  L + W++G E+FM  L
Sbjct: 114 NYLDA-IEGKTNIDCFNEWVIELKENNYLHNHTRMWFASIWIFTLELPWQLGAEFFMQHL 172

Query: 381 LDGDLASNNGGWQWAAST 398
            DGD ASN  GW+W A  
Sbjct: 173 FDGDAASNTLGWRWVAGV 190


>gi|300957649|ref|ZP_07169841.1| hypothetical protein HMPREF9547_03390 [Escherichia coli MS 175-1]
 gi|300315626|gb|EFJ65410.1| hypothetical protein HMPREF9547_03390 [Escherichia coli MS 175-1]
          Length = 58

 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 38/51 (74%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ 57
          M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ
Sbjct: 1  MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQ 51


>gi|126735413|ref|ZP_01751159.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. CCS2]
 gi|126715968|gb|EBA12833.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. CCS2]
          Length = 386

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 13/196 (6%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           MF       L  L  F       Y  +R+   +   S LSPY+   +++        +E+
Sbjct: 1   MFEPTYTAGLERLAAFVPHAGRDYASKRNYDNLAHVSALSPYIRHRIIT--------EED 52

Query: 267 FVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
            +   +   S   A  ++ E+ WR +++  +   PSV                 +S L Q
Sbjct: 53  VLKATLARHSPQTAEKFIQEVYWRTYWKGWLEMRPSVWAMYRSDLQAALNRVQTESGLRQ 112

Query: 325 AWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
            W+   +G TG    D   +QL   G++HN  RM  AS  +  L + W +G ++FM  LL
Sbjct: 113 EWEAACKGDTGIDCFDHWAKQLADTGYLHNHARMWFASIWIFTLRLPWTLGADFFMRHLL 172

Query: 382 DGDLASNNGGWQWAAS 397
           DGD ASN   W+W   
Sbjct: 173 DGDAASNTLSWRWVGG 188


>gi|225848662|ref|YP_002728825.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644140|gb|ACN99190.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 452

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 168/396 (42%), Gaps = 21/396 (5%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
           LR D   +   A+  A   +   +++ FI      +    + R   F+   +L+ +K++ 
Sbjct: 29  LREDFNFSLEFAIQKANKLNKPLLVSFFITD----KYKHSNQRYYKFMIEGILKTKKAIE 84

Query: 74  QKGIVFQYHQCSNFDDSIEW-LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
           ++GI F   +    + +++   ++ C+      L   R++  N  +  ++   +L++ V+
Sbjct: 85  ERGIKFVIQKDDYVNGTLKLSKEAVCIVLDKNYLKTQRKWRENIAKASQVAVYQLENDVV 144

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192
                 S    P + L +  ++ KV   F K + +  ++ + + L V ++    P    +
Sbjct: 145 VPIQVVSDKPIPYAYL-YRDRLNKVIDRFLKPVEKIDLKVNSKDLDVESLEFKTPDEFLS 203

Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG 252
           I    D     +D  F  G   A   L++F ++K+Y Y E R  P+   TS LSPYL  G
Sbjct: 204 ILNI-DKTVSTVDKYFVGGYDEAEKRLKEFIEKKLYKYKEFRSDPSKDYTSNLSPYLHFG 262

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWT 311
            +SP     ++  E +    K      S+ NELI WRE  R+   + P     +    W 
Sbjct: 263 QISPL----KIVLEVLKHYDKNDENVVSFFNELIVWRELSRNFCWYNPLYNQYEGIPQWA 318

Query: 312 EKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV--- 362
            +   E  KD     + LQ +++  T  P  +AA ++L   G +HN +RM  A  ++   
Sbjct: 319 RQTLEEHKKDKRDYVYSLQEFEEAKTHDPYWNAAQKELLKTGKIHNYMRMYWAKKIIEWT 378

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           +D    + I         LDG   +  GG  W   T
Sbjct: 379 EDPKQAFDIACYLNDKYALDGRDPNGYGGISWCFGT 414


>gi|302384123|ref|YP_003819946.1| DNA photolyase FAD-binding protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194751|gb|ADL02323.1| DNA photolyase FAD-binding protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 418

 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 47/278 (16%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           FP      L  L  F       Y   R+  A  G     S LSP+L   +L+ R+    +
Sbjct: 8   FPPTRAAGLQRLADFVPHAGEAYAMGRNTDAGPGGHLAVSGLSPWLRHRLLTEREVVAGV 67

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE---KIEWNKDS 320
            E        P++ A  ++ E++WR +++  +   P V        WT    + +  + S
Sbjct: 68  LERH-----DPRA-AQRFIQEVLWRTYWKGWLQMNPEV--------WTRYQAERDAPRAS 113

Query: 321 HLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
            L +A  Q   G TG    D   R+L   G++HN  RM  AS  +  L + W +G ++F+
Sbjct: 114 GLERAVAQAEAGATGIEGFDDWARELVRTGYLHNHARMWFASIWIFTLGLPWALGADFFL 173

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT----IQGKRFDPQGTFIRHWLPELN 433
             LLDGD ASN   W+W A  G  +V    +  P         RF P+G   R  LP   
Sbjct: 174 RHLLDGDPASNTLSWRWVA--GLQTVGKTYLATPENIQRFTNGRFKPRGLATRA-LP--- 227

Query: 434 NVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
                        L ++ L    PLP+++       +L
Sbjct: 228 -------------LSEDPLPAARPLPMLEASPPAGRSL 252


>gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1 [Passer domesticus]
          Length = 361

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 79/176 (44%), Gaps = 15/176 (8%)

Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249
             +P   + P ++  GE  AL  L K  + K +  V   + P +   S       LSPYL
Sbjct: 188 LGFPTDGLAPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 245

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPF 307
             G LS R  + RL E +  +  +  +   S   +L+WREF+       P      G P 
Sbjct: 246 RFGCLSCRLFYYRLWELYKKV-KRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPI 304

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL +
Sbjct: 305 CI---QIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 357


>gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus]
          Length = 361

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 79/176 (44%), Gaps = 15/176 (8%)

Query: 197 FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS------QLSPYL 249
             +P   + P ++  GE  AL  L K  + K +  V   + P +   S       LSPYL
Sbjct: 188 LGFPTDGLAPAVWQGGETEALARLDKHLERKAW--VANYERPRMNANSLLASPTGLSPYL 245

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPF 307
             G LS R  + RL E +  +  +  +   S   +L+WREF+       P      G P 
Sbjct: 246 RFGCLSCRLFYYRLWELYKKV-KRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPI 304

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL +
Sbjct: 305 CI---QIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 357


>gi|315500507|ref|YP_004089309.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB
           48]
 gi|315418519|gb|ADU15158.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB
           48]
          Length = 390

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 88/215 (40%), Gaps = 13/215 (6%)

Query: 214 NALHILRKFCKEKVYYYVEQRDI-PAIQGT---SQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            AL  L  F       Y   R+I P    T   S+LSPY+   ++   +     ++    
Sbjct: 10  QALERLEAFLPRAGSAYARDRNIDPGPNDTGHVSKLSPYVRHRLIGEWELARAAEKAHGA 69

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
              K       +++E+ WR ++R  +   P++         +++ E  + +    A   G
Sbjct: 70  AASK-------FIDEVCWRSYWRGYLEMRPALWASYVDYLLSDEAETARQTDTYCAAVSG 122

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG    D    +L T G++HN  RM  AS  V  L + W++G  +F+  LLDGD A+N 
Sbjct: 123 QTGIDAFDVWTAELITTGYLHNHARMSFASIWVHTLRLPWQLGAAFFLEHLLDGDEAANT 182

Query: 390 GGWQWAASTGNDSVPYFRIFNP--TIQGKRFDPQG 422
             W+W A        Y        T    RF P G
Sbjct: 183 LSWRWVAGLHTPGKVYLASSEAIDTCSAGRFRPTG 217


>gi|323449922|gb|EGB05806.1| hypothetical protein AURANDRAFT_30135 [Aureococcus anophagefferens]
          Length = 73

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 45/73 (61%)

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           L   W +G TG+P +DA MRQL   G M + LR + A+FLV+DL V WR G E+F + LL
Sbjct: 1   LFAKWTRGATGYPFVDAGMRQLAAEGRMPHLLRQLCAAFLVRDLRVPWRWGAEWFEAHLL 60

Query: 382 DGDLASNNGGWQW 394
           D    +N G W +
Sbjct: 61  DHAPDANYGNWGY 73


>gi|72382567|ref|YP_291922.1| putative DNA photolyase [Prochlorococcus marinus str. NATL2A]
 gi|72002417|gb|AAZ58219.1| putative DNA photolyase [Prochlorococcus marinus str. NATL2A]
          Length = 371

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 11/129 (8%)

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI---EWNKDSHLLQAWKQGYTGFPIID 337
           + +E++WR +++  +  Y S+        W E I   E + +S+L+ +   G TG    D
Sbjct: 68  YTDEILWRIYWKGYLENYKSI--------WFEYINFKENSNNSYLISSAMNGKTGIDCFD 119

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
             + +L    ++HN  RM  AS  +  L + W++G   FM  LLDGD ASN   W+W A 
Sbjct: 120 TWIEELKENNYLHNHARMWFASIWIFTLGLPWQLGARLFMKHLLDGDAASNTLSWRWVAG 179

Query: 398 TGNDSVPYF 406
              +  PY 
Sbjct: 180 MHTNKKPYL 188


>gi|227505175|ref|ZP_03935224.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940]
 gi|227198224|gb|EEI78272.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940]
          Length = 120

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 40/54 (74%)

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
           L+AW+ G TG P++DA MR+L   G+MHN +RM+  SFL K+L + WR GEE+F
Sbjct: 40  LEAWRTGETGIPLVDAGMRELWQTGYMHNHVRMVVGSFLTKNLGIHWRHGEEWF 93


>gi|254251923|ref|ZP_04945241.1| Deoxyribodipyrimidine photolyase [Burkholderia dolosa AUO158]
 gi|124894532|gb|EAY68412.1| Deoxyribodipyrimidine photolyase [Burkholderia dolosa AUO158]
          Length = 93

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 12/94 (12%)

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN 455
           A  G D+ PYFR+FNP  QG++  P G  +R W+PEL  V    +HA   W D + L+L 
Sbjct: 2   AGCGADAAPYFRVFNPVAQGRKLGPSGAHVRRWVPELARVDDAAVHA--RW-DASPLTLA 58

Query: 456 ---------YPLPIVDHKKACHHTLNQYYAAKKQ 480
                    YP P+VDH  A    L+ +    K+
Sbjct: 59  AAGVRLGVVYPAPLVDHDAARRRALDAFATLPKR 92


>gi|146337586|ref|YP_001202634.1| putative deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp.
           ORS278]
 gi|146190392|emb|CAL74388.1| putative Deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp.
           ORS278]
          Length = 406

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 31/175 (17%)

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------------LQAWKQG 329
           + E+IWR +++  +   P V        WT  +   +D+ L            + A + G
Sbjct: 77  VEEVIWRGYFKGWLERRPQV--------WTSYLR-GRDADLERLDSDGALQARVAAAEAG 127

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG    DA  ++L   G +HN  RM  AS  +  L + WR+G ++F+  LLDGD ASN 
Sbjct: 128 RTGLACFDAFAQELVATGMLHNHARMWFASLWIFTLGLPWRLGADFFLRHLLDGDPASNT 187

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQ--GKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            GW+W A        Y    +   Q    RF P+        PE   +P Q + A
Sbjct: 188 LGWRWVAGLHTRGKVYAATASNIAQYSAGRFAPR--------PEDIVIPAQGLEA 234


>gi|124026272|ref|YP_001015388.1| DNA photolyase-like protein [Prochlorococcus marinus str. NATL1A]
 gi|123961340|gb|ABM76123.1| DNA photolyase-like protein [Prochlorococcus marinus str. NATL1A]
          Length = 371

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 35/214 (16%)

Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256
           FD     +D  F     N+ H LR +      Y +E R        SQ+S Y S      
Sbjct: 4   FDEANDLLDN-FIFNHLNSYHQLRNYD-----YGIEDR-----TNVSQISKYTS------ 46

Query: 257 RQCWNRLKEEFVDLL--IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
               +R+  EF D++  +K       + +E++WR +++  +  Y S+        W E I
Sbjct: 47  ----HRILYEF-DIIEKLKKYDKKQKYTDEILWRIYWKGYLENYKSI--------WFEYI 93

Query: 315 ---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
              E + +S+L+ +   G TG    D  + +L    ++HN  RM  AS  +  L + W++
Sbjct: 94  NFKENSNNSYLISSAINGKTGIDCFDTWIEELRENNYLHNHARMWFASIWIFTLGLPWQL 153

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           G   FM  LLDGD ASN   W+W A    +  PY
Sbjct: 154 GARLFMKHLLDGDAASNTLSWRWVAGMHTNKKPY 187


>gi|297184363|gb|ADI20479.1| deoxyribodipyrimidine photolyase [uncultured alpha proteobacterium
           EB080_L58F04]
          Length = 278

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 89/216 (41%), Gaps = 21/216 (9%)

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            LR F       Y   R+     G     S LSPYL       R+           +L  
Sbjct: 21  TLRAFAPRMGKGYTNGRNHDRGAGKHRDVSMLSPYLR------RRLVMEQDAVATAVLEH 74

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSV------CMGKPFIPWTEKIEWNKDSHLLQAWK 327
              GA  ++ E+IWR +++  M   P V       + +  +         +     +A++
Sbjct: 75  GAEGAEKFIQEVIWRGYFKGWMERRPVVWDQYREGLMRDLMALDRDRGLRRRVESAEAYQ 134

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
              TG    D    +L   G++HN  RM  AS  +  L + WR+G ++F   LLDGD AS
Sbjct: 135 ---TGLDYFDNWAEELVETGYLHNHARMWFASIWIFTLELPWRLGADFFYRHLLDGDPAS 191

Query: 388 NNGGWQWAASTGNDSVPYF-RIFN-PTIQGKRFDPQ 421
           N  GW+W A       PY+ R +N      KRF+P+
Sbjct: 192 NTLGWRWVAGLHTRGKPYYARAWNIAKFTDKRFNPR 227


>gi|317406428|gb|EFV86641.1| hypothetical protein HMPREF0005_05613 [Achromobacter xylosoxidans
           C54]
          Length = 151

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 3/150 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+WLR DLR+ DN AL AA   ++    A+FIA P QWR HG +  +  F   +L  + +
Sbjct: 4   LIWLRTDLRLHDNPALAAA--AAEGTATALFIAAPGQWRLHGDAPAKVDFWLRNLRTLSR 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ GI  +      +D   + L  +C +  +T +  N ++ +NE RRD  +  RL   
Sbjct: 62  DLARLGIPLKLLTVDTWDQVPDALPRFCREHGITAVHANTEWAVNERRRDDAVACRLAEA 121

Query: 131 VICKSFDDSV-LLPPGSILNHALQMYKVYT 159
            I  +      LL PG+++      Y+VYT
Sbjct: 122 GIDWTLHHGASLLRPGTVVTGKGDCYRVYT 151


>gi|161138098|gb|ABX58021.1| cryptochrome 2 [Triticum aestivum]
          Length = 76

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/72 (41%), Positives = 45/72 (62%)

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G +YF   LLD D+ S+  GWQ+ A    D     R+ NP +QG+++DP G ++R W+PE
Sbjct: 2   GMKYFWDVLLDADIESDILGWQYIAGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIPE 61

Query: 432 LNNVPTQYIHAP 443
           L  +P ++IH P
Sbjct: 62  LARMPGEWIHHP 73


>gi|255564190|ref|XP_002523092.1| DNA photolyase, putative [Ricinus communis]
 gi|223537654|gb|EEF39277.1| DNA photolyase, putative [Ricinus communis]
          Length = 458

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 136/322 (42%), Gaps = 42/322 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62
           +VW RNDLR+ DN+ L +A +N    V+ V+   P   R++G S+         ++ F+ 
Sbjct: 129 IVWFRNDLRVHDNECLNSA-NNESMSVLPVYCFDP---REYGKSSSGFDKTGPYRASFLI 184

Query: 63  ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
            S+  ++K+L  +G  +V +  +          L           ++ +++   +EV+ +
Sbjct: 185 ESVTDLRKNLQDRGSDLVVRVGKPETV------LVELAKAIGADAVYAHKEVSHDEVKAE 238

Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP- 178
             +E  ++   V  K F  S L     +      M   Y  FR+ +    V+  + +L  
Sbjct: 239 DKIEAAMKDEGVEVKYFWGSTLYHVDDLPFKLEDMPSNYGGFREKVHGLEVRKTIAALDQ 298

Query: 179 VPAIRLTGPVTPSNIPRFFDY---PFQAIDPMFPI----GEQNALHILRKF---CKEKVY 228
           +      G V P  IP   D    P Q   P        GE  AL  L+KF   C+ +  
Sbjct: 299 LKGKPSRGDVEPGEIPSLLDLGLNPTQGGKPAATASMVGGETEALQRLKKFAAECQAQPP 358

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG---------AF 279
               Q  I     + ++SP+L++G +SPR  ++ LK+     +     G           
Sbjct: 359 KGGSQDSIYGANFSCKISPWLTMGCISPRSMFDELKKTATRTISAASKGNDGGSPPDTGM 418

Query: 280 SWLN-ELIWREFYRHLMAFYPS 300
           +WL  EL+WR+F+R +   Y S
Sbjct: 419 NWLMFELLWRDFFRFITKKYSS 440


>gi|84516926|ref|ZP_01004284.1| DNA photolyase-like protein [Loktanella vestfoldensis SKA53]
 gi|84509394|gb|EAQ05853.1| DNA photolyase-like protein [Loktanella vestfoldensis SKA53]
          Length = 400

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 87/223 (39%), Gaps = 15/223 (6%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           MF     +A+  L  F       Y   R+   I   S LSPY+   +++       +   
Sbjct: 1   MFTPTYTDAVTRLAAFTPHAGRDYAAMRNHDDIAHVSALSPYIRHRIITEADVLRAV--- 57

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
              L       A  ++ E+ WR +++  +   P+V             +    + L   W
Sbjct: 58  ---LARHSPQAAEKFVQEVFWRTYWKGWLELRPTVWANYQRDLAAAMNQIQTQAGLRAQW 114

Query: 327 KQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +    G TG    D   RQL   G++HN  RM  AS  +  L + W +G ++F+  LLDG
Sbjct: 115 ETACLGQTGIDGFDHWARQLADTGYLHNHARMWFASIWIHTLKLPWVLGADFFLRHLLDG 174

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK----RFDPQG 422
           D ASN   W+W          Y  +  P    K    RF P+G
Sbjct: 175 DAASNTLSWRWVGGIQTQGKAY--LAQPDNIAKYTQGRFRPEG 215


>gi|108859915|emb|CAK26694.1| putative cryptochrome [Picea abies]
 gi|108859929|emb|CAK26701.1| putative cryptochrome [Picea abies]
 gi|108859931|emb|CAK26702.1| putative cryptochrome [Picea abies]
 gi|108859945|emb|CAK26709.1| putative cryptochrome [Picea abies]
 gi|108859969|emb|CAK26721.1| putative cryptochrome [Picea abies]
          Length = 259

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-- 441
           DL  +  GWQ+ +    D     RI NP  +G +FDP G ++R WLPEL  +PT++IH  
Sbjct: 1   DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60

Query: 442 --APHSWLDKNDLSL--NYPLPIVDHKKA 466
             AP + L    + L  NYPLPIV+   A
Sbjct: 61  WDAPRAVLQAAGVELGSNYPLPIVEISTA 89


>gi|108859871|emb|CAK26672.1| putative cryptochrome [Picea abies]
 gi|108859873|emb|CAK26673.1| putative cryptochrome [Picea abies]
 gi|108859875|emb|CAK26674.1| putative cryptochrome [Picea abies]
 gi|108859879|emb|CAK26676.1| putative cryptochrome [Picea abies]
 gi|108859881|emb|CAK26677.1| putative cryptochrome [Picea abies]
 gi|108859883|emb|CAK26678.1| putative cryptochrome [Picea abies]
 gi|108859885|emb|CAK26679.1| putative cryptochrome [Picea abies]
 gi|108859887|emb|CAK26680.1| putative cryptochrome [Picea abies]
 gi|108859889|emb|CAK26681.1| putative cryptochrome [Picea abies]
 gi|108859891|emb|CAK26682.1| putative cryptochrome [Picea abies]
 gi|108859893|emb|CAK26683.1| putative cryptochrome [Picea abies]
 gi|108859899|emb|CAK26686.1| putative cryptochrome [Picea abies]
 gi|108859901|emb|CAK26687.1| putative cryptochrome [Picea abies]
 gi|108859903|emb|CAK26688.1| putative cryptochrome [Picea abies]
 gi|108859907|emb|CAK26690.1| putative cryptochrome [Picea abies]
 gi|108859909|emb|CAK26691.1| putative cryptochrome [Picea abies]
 gi|108859911|emb|CAK26692.1| putative cryptochrome [Picea abies]
 gi|108859917|emb|CAK26695.1| putative cryptochrome [Picea abies]
 gi|108859921|emb|CAK26697.1| putative cryptochrome [Picea abies]
 gi|108859923|emb|CAK26698.1| putative cryptochrome [Picea abies]
 gi|108859925|emb|CAK26699.1| putative cryptochrome [Picea abies]
 gi|108859927|emb|CAK26700.1| putative cryptochrome [Picea abies]
 gi|108859933|emb|CAK26703.1| putative cryptochrome [Picea abies]
 gi|108859935|emb|CAK26704.1| putative cryptochrome [Picea abies]
 gi|108859937|emb|CAK26705.1| putative cryptochrome [Picea abies]
 gi|108859939|emb|CAK26706.1| putative cryptochrome [Picea abies]
 gi|108859941|emb|CAK26707.1| putative cryptochrome [Picea abies]
 gi|108859943|emb|CAK26708.1| putative cryptochrome [Picea abies]
 gi|108859949|emb|CAK26711.1| putative cryptochrome [Picea abies]
 gi|108859951|emb|CAK26712.1| putative cryptochrome [Picea abies]
 gi|108859953|emb|CAK26713.1| putative cryptochrome [Picea abies]
 gi|108859955|emb|CAK26714.1| putative cryptochrome [Picea abies]
 gi|108859957|emb|CAK26715.1| putative cryptochrome [Picea abies]
 gi|108859959|emb|CAK26716.1| putative cryptochrome [Picea abies]
 gi|108859961|emb|CAK26717.1| putative cryptochrome [Picea abies]
 gi|108859963|emb|CAK26718.1| putative cryptochrome [Picea abies]
 gi|108859965|emb|CAK26719.1| putative cryptochrome [Picea abies]
 gi|108859967|emb|CAK26720.1| putative cryptochrome [Picea abies]
 gi|108859973|emb|CAK26723.1| putative cryptochrome [Picea abies]
          Length = 259

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-- 441
           DL  +  GWQ+ +    D     RI NP  +G +FDP G ++R WLPEL  +PT++IH  
Sbjct: 1   DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60

Query: 442 --APHSWLDKNDLSL--NYPLPIVDHKKA 466
             AP + L    + L  NYPLPIV+   A
Sbjct: 61  WDAPRAVLQAAGVELGSNYPLPIVEISTA 89


>gi|108859897|emb|CAK26685.1| putative cryptochrome [Picea abies]
          Length = 259

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-- 441
           DL  +  GWQ+ +    D     RI NP  +G +FDP G ++R WLPEL  +PT++IH  
Sbjct: 1   DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60

Query: 442 --APHSWLDKNDLSL--NYPLPIVDHKKA 466
             AP + L    + L  NYPLPIV+   A
Sbjct: 61  WDAPRAVLQAAGVELGSNYPLPIVEISTA 89


>gi|254440134|ref|ZP_05053628.1| hypothetical protein OA307_5004 [Octadecabacter antarcticus 307]
 gi|198255580|gb|EDY79894.1| hypothetical protein OA307_5004 [Octadecabacter antarcticus 307]
          Length = 384

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 8/180 (4%)

Query: 250 SIGVLSP---RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           ++ VLSP   R+     +     L       A  ++ E+IWR +++  +   P V     
Sbjct: 20  AVSVLSPYIRRRLLTEAEVVAAALTTHGPDDARVFIEEVIWRGYFKGWLERRPQVWDSYA 79

Query: 307 FIPWTEKIEWNKDSHLL---QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                + +  N+D  L    +  + G TG    D   ++L   G++HN  RM  AS  + 
Sbjct: 80  LGLNADLVSLNRDRRLRRDLELAETGQTGMDYFDTWAQELVDTGYLHNHARMWFASIWIF 139

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFN-PTIQGKRFDPQ 421
            L + WR+G ++F   LLDGD A+N   W+WAA       PY  R  N  T  G RF+P+
Sbjct: 140 TLGLPWRLGADFFYRHLLDGDAAANTLNWRWAAGLHTRGKPYPARAKNIATFTGGRFNPR 199


>gi|108859877|emb|CAK26675.1| putative cryptochrome [Picea abies]
 gi|108859895|emb|CAK26684.1| putative cryptochrome [Picea abies]
 gi|108859905|emb|CAK26689.1| putative cryptochrome [Picea abies]
 gi|108859913|emb|CAK26693.1| putative cryptochrome [Picea abies]
 gi|108859919|emb|CAK26696.1| putative cryptochrome [Picea abies]
 gi|108859947|emb|CAK26710.1| putative cryptochrome [Picea abies]
 gi|108859971|emb|CAK26722.1| putative cryptochrome [Picea abies]
          Length = 259

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH-- 441
           DL  +  GWQ+ +    D     RI NP  +G +FDP G ++R WLPEL  +PT++IH  
Sbjct: 1   DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60

Query: 442 --APHSWLDKNDLSL--NYPLPIVDHKKA 466
             AP + L    + L  NYPLPIV+   A
Sbjct: 61  WDAPRAVLQAAGVELGSNYPLPIVEISTA 89


>gi|161138100|gb|ABX58022.1| cryptochrome 2 [Triticum aestivum]
          Length = 76

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 46/72 (63%)

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G +YF   LLD D+ S+  GWQ+ + +  D     R+ NP +QG+++DP G ++R W+PE
Sbjct: 2   GMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIPE 61

Query: 432 LNNVPTQYIHAP 443
           L  +P ++IH P
Sbjct: 62  LARMPGEWIHHP 73


>gi|31322268|gb|AAP22940.1| cryptochrome 1 [Arvicanthis ansorgei]
          Length = 155

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 7/109 (6%)

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G + F   LLD D + N G W W  S  +    +F  + P   G+R DP G 
Sbjct: 2   DLWISWEEGMKVFEELLLDADWSINAGSWMWL-SCSSFFQQFFHCYCPVGFGRRTDPNGD 60

Query: 424 FIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466
           +IR +LP L   P +YI+ P +       + K  + LNYP P+V+H +A
Sbjct: 61  YIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCLIGLNYPKPMVNHAEA 109


>gi|296419444|ref|XP_002839318.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635446|emb|CAZ83509.1| unnamed protein product [Tuber melanosporum]
          Length = 265

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 52/187 (27%)

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPF-IPWTEKIEWNKDSHLLQAW-KQGYTGFPIID 337
           +W++E+  ++F+++++  +P VC  K   +P +   +++  + L +++   G+TG PIID
Sbjct: 118 TWISEIAQKDFHKNVLVNWPFVCTNKTSKLPHSPTPQYS--TSLAESYFYAGHTGDPIID 175

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           AA+RQL    ++ NR R +                                         
Sbjct: 176 AAIRQLQKTKYIRNRARTV--------------------------------------CVG 197

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457
           TG D  PYFR+FNP ++  +F P    IR W+ +L  V     HAP   LD+        
Sbjct: 198 TGVDPQPYFRLFNP-VKSLQFYPHSEHIRTWVGKLKEV-----HAPPKVLDEEGAK---- 247

Query: 458 LPIVDHK 464
            P+VDH+
Sbjct: 248 KPLVDHE 254


>gi|149198711|ref|ZP_01875754.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera
           araneosa HTCC2155]
 gi|149138147|gb|EDM26557.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera
           araneosa HTCC2155]
          Length = 365

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 32/182 (17%)

Query: 230 YVEQRDIPAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y + R+   + GT S LSPY+S GV+S R  ++ L +   +L    K     ++ EL WR
Sbjct: 23  YAKTRNF--LDGTVSCLSPYISRGVISTRTVYDSLIKRGYNLEKIEK-----FVQELAWR 75

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWK---------QGYTGFPIIDA 338
           ++++    FY               I+ NKD  H  QA+          +G     + + 
Sbjct: 76  DYWQSQWKFYG--------------IKINKDLRHTQQAFHNHGMPHCLVKGQCSIQMFNT 121

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           A++QLN+ G++HN +RM  A  +       W    ++    L+DGD ASN   WQW A  
Sbjct: 122 AIKQLNSTGYLHNHMRMYLAMSICNIGSYHWHKPAQWMYYNLIDGDWASNALSWQWVAGC 181

Query: 399 GN 400
            N
Sbjct: 182 LN 183


>gi|254456085|ref|ZP_05069514.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083087|gb|EDZ60513.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 379

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 11/195 (5%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNR 262
           +F      AL  L  F +  +  Y + R+           S LSPY++ G++S  +  ++
Sbjct: 2   IFEASRAKALDKLNHFVESNLSQYSKLRNFDFGPDNRSNISCLSPYITHGIISELEVIDK 61

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             ++F       K+  F  + E++WR +++  +   P+V           + E+    + 
Sbjct: 62  SLKKFS----FTKNEKF--IQEVLWRVYWKGWLELRPNVWSDFLMELNNLRNEFKDKQNY 115

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L A  +G T     +  + +L    ++HN  RM  AS  +  L + W++G E+FM  L D
Sbjct: 116 LDA-IEGKTDLECFNQWVNELKENNYLHNHTRMWFASIWIFTLELPWQLGAEFFMKHLYD 174

Query: 383 GDLASNNGGWQWAAS 397
           GD ASN  GW+W A 
Sbjct: 175 GDAASNTLGWRWVAG 189


>gi|311743861|ref|ZP_07717667.1| deoxyribodipyrimidine photolyase family protein [Aeromicrobium
           marinum DSM 15272]
 gi|311312991|gb|EFQ82902.1| deoxyribodipyrimidine photolyase family protein [Aeromicrobium
           marinum DSM 15272]
          Length = 416

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 72/168 (42%), Gaps = 22/168 (13%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +G S++SPY+  G+L     W+ + +        P S    + +EL+W+E+ RHL A   
Sbjct: 72  RGASRMSPYIRHGLLDLPTVWDAVTD-------APASDRRRYRDELLWQEYARHLYARL- 123

Query: 300 SVCMGKP--FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                +P  F P     +   D  +               A  R+L   GW+ N+ RM  
Sbjct: 124 GTATAEPLRFDPPRPAADPQWDEQMA-----------CTAAVRRELKDDGWLVNQTRMWW 172

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           AS         WR GE+ F   LLDG  A+N  GWQW   TG    PY
Sbjct: 173 ASHWTVRHGRHWRDGEDDFFRHLLDGSRAANRLGWQWTVGTGTGK-PY 219


>gi|15558998|gb|AAL02087.1|AF348456_1 cryptochrome 1 [Cucumis melo]
          Length = 61

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 41/59 (69%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD DL S+  GWQ+ + T  DS  + RI NP ++G +FDP G ++R WLPEL+ +PT+
Sbjct: 3   LLDADLESDALGWQYISGTLPDSREFDRIDNPQLEGYKFDPNGEYVRRWLPELSRLPTE 61


>gi|114769242|ref|ZP_01446868.1| DNA photolyase-like protein [alpha proteobacterium HTCC2255]
 gi|114550159|gb|EAU53040.1| DNA photolyase-like protein [alpha proteobacterium HTCC2255]
          Length = 418

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCM--GKPFIPWTEKIEWN---KDSHLLQAWKQGYT 331
            A  ++ E+ WR +++  +  +P+V        I    K+E N   K+S++      G T
Sbjct: 86  SAMKFIQEVFWRGYFKGWLEQHPTVWSHHNDKLIKEYAKLENNRFVKESYMSAV--NGET 143

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G    D    QL + G++HN +RM  AS  V  L +   +G ++FM  L+D D ASN   
Sbjct: 144 GIECFDFWCEQLKSTGYLHNHVRMWFASIWVFTLKLPMELGADFFMLHLIDADAASNTLS 203

Query: 392 WQWAASTGNDSVPY-FRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP--HSWL 447
           W+W +        Y  R  N       +F+P G  + +  P + N+    +  P  H  +
Sbjct: 204 WRWVSGLHTKGKAYAARASNIEKFTNGQFNPSGQLVENIEPLIENIDHPLVSLPQLHQSI 263

Query: 448 DKNDLSL 454
           +K+ + L
Sbjct: 264 EKDAILL 270


>gi|254461840|ref|ZP_05075256.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083]
 gi|206678429|gb|EDZ42916.1| conserved hypothetical protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 419

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 6/207 (2%)

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIID 337
           +++E+ WR +++  +  +P+V          +     KD  L   +     G TG    D
Sbjct: 90  FVHEVFWRTYFKGWLEHHPTVWSAYQAGLLRQLKSAGKDRRLAANYAAAMAGETGIDGFD 149

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
              ++L T G++HN  RM  AS  +  L + W +G ++F+  L+DGD ASN   W+W A 
Sbjct: 150 DWTKELLTTGYLHNHARMWFASIWIFTLGLPWELGADFFLRHLMDGDPASNTLAWRWVAG 209

Query: 398 TGNDSVPYF-RIFNPT-IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN 455
                 PY  R+ N +    +RF P         P       Q    P++     +++ +
Sbjct: 210 IQTKGRPYVARVSNISKFTDQRFSPLHQLNTQVEPLSEEADHQRHPLPNA-ATSAEITGD 268

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQSL 482
           Y L + +       TL   +AAK  +L
Sbjct: 269 YLLLVTEDDMQVEETLPHPHAAKIGAL 295


>gi|71083003|ref|YP_265722.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062116|gb|AAZ21119.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 380

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 15/197 (7%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNR 262
           +F      A+  L  F ++ +  Y + R+    P+ +   S LSPY++ G+++  +  N+
Sbjct: 2   IFEASRAKAVDKLNTFVEQNLSDYSKLRNFDFGPSNRSNVSCLSPYITHGIINELEVINK 61

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS 320
             ++F        +    ++ E++W  +++  +   P V     ++   +KI  E+  + 
Sbjct: 62  SLKKF------SFANNEKFIQEVLWHVYWKGWLELRPDVW--SDYLIELDKIKKEFKNNQ 113

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
             L A  +G T     +  + +L    ++HN  RM  AS  +  L + W++G E+FM  L
Sbjct: 114 SYLDA-TEGKTNVDCFNQWVSELKENNYLHNHTRMWFASIWIFTLELPWQLGAEFFMQHL 172

Query: 381 LDGDLASNNGGWQWAAS 397
            DGD ASN  GW+W A 
Sbjct: 173 YDGDAASNTLGWRWVAG 189


>gi|152967990|ref|YP_001363774.1| deoxyribodipyrimidine photolyase-like [Kineococcus radiotolerans
           SRS30216]
 gi|151362507|gb|ABS05510.1| Deoxyribodipyrimidine photolyase-like [Kineococcus radiotolerans
           SRS30216]
          Length = 371

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 69/168 (41%), Gaps = 16/168 (9%)

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P  +G ++LSPY+  G+L     W    +        P      + +EL+W+E+ RHL A
Sbjct: 35  PERRGATRLSPYVRHGLLPLPTVWAAAGD-------APARDRAKFRDELLWQEYARHLYA 87

Query: 297 -FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P+      F        W ++      W Q       +     +L+  GW+ N+ RM
Sbjct: 88  RLGPATARPLRFAAPVPAQPWEREP-----WPQDMA---CVATTTAELHEEGWLVNQTRM 139

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             AS        DWR G       LLDG  A+N  GWQWA  TG   V
Sbjct: 140 WLASQYSVRAGADWREGAREMYRHLLDGSPAANRLGWQWAVGTGTGKV 187


>gi|294053665|ref|YP_003547323.1| DNA photolyase FAD-binding protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293612998|gb|ADE53153.1| DNA photolyase FAD-binding protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 399

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 11/187 (5%)

Query: 215 ALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           AL  L  F       Y E R+    P  QG  S+LSP++   +L      + + E     
Sbjct: 9   ALAALGDFLPHAGRDYAEGRNTDPGPEQQGAVSRLSPWIRTRMLPEWYVISAVLERHS-- 66

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
                S A  +++E+ WR +++  +   PS+      +   + ++   D         G 
Sbjct: 67  ----ASAASKYIDEVCWRTYWKGWLQLRPSIWKDY-LLARNDLLDQYADHPDYNNAISGQ 121

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG    DA  ++L     +HN  RM  AS  V  L + W++G ++F+  LLDGD ASN  
Sbjct: 122 TGIDCFDAWAKELTETNQLHNHARMWYASIWVHSLKLPWQLGADWFLRHLLDGDPASNTL 181

Query: 391 GWQWAAS 397
            W+W   
Sbjct: 182 SWRWVTG 188


>gi|254437730|ref|ZP_05051224.1| hypothetical protein OA307_2600 [Octadecabacter antarcticus 307]
 gi|198253176|gb|EDY77490.1| hypothetical protein OA307_2600 [Octadecabacter antarcticus 307]
          Length = 408

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 42/78 (53%)

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TG    DA   +L   G++HN  RM  AS  +  L + WR+G ++F   LLDGD AS
Sbjct: 128 NGQTGIECFDARAMELVDTGYLHNHARMWFASIWIFTLGLPWRLGADFFYRHLLDGDAAS 187

Query: 388 NNGGWQWAASTGNDSVPY 405
           N  GW+WAA       PY
Sbjct: 188 NTLGWRWAAGLHTRGKPY 205


>gi|149916364|ref|ZP_01904884.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149809818|gb|EDM69670.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 407

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 82/192 (42%), Gaps = 17/192 (8%)

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           AL  LR F  +    Y   R+     G     S LSPYL   +L+        ++E +  
Sbjct: 17  ALDRLRVFAPKAGGDYARLRNYDLGPGRHSHVSTLSPYLRHRLLT--------EDEVLRT 68

Query: 271 LIKPKS--GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK- 327
           ++   S   A  ++ E+ WR +++  +   P+V                 +S L Q W  
Sbjct: 69  VLARHSPQAAEKFIQEVFWRSYWKGWLEMRPAVWTAYRAGLAAALNRTQVESGLRQRWSD 128

Query: 328 --QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
              G TG    D    +L   G++HN  RM  AS  V  L + W +G ++F+  L DGD 
Sbjct: 129 ACNGQTGIDGFDHWAHELIQTGYLHNHARMWFASIWVFTLGLPWELGADFFLRHLHDGDP 188

Query: 386 ASNNGGWQWAAS 397
           ASN  GW+W A 
Sbjct: 189 ASNTLGWRWVAG 200


>gi|318041065|ref|ZP_07973021.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. CB0101]
          Length = 251

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 116/282 (41%), Gaps = 61/282 (21%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +VW R DLR++D+ AL  AC+     V+ VF+   +       +  +  F+  +L 
Sbjct: 1   MACTVVWFRRDLRLSDHAALSEACNQ--GAVLPVFVLDRDLLFHPETAVARVAFMLNNLQ 58

Query: 67  QVQKSLSQKGI------------VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
            +   L Q+G             + Q  Q S  D  I   DS  L  RV           
Sbjct: 59  ALDADLRQRGGRLLIRCGDPAEQLLQVVQLSGADGVIAHTDSERLVGRV----------- 107

Query: 115 NEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
               RD  + + L  HR+  +  +     P G     A      Y+ + +   Q +    
Sbjct: 108 ----RDARVSRTLAAHRIPLRWVE-----PAG-----ACGELMAYSGWSRQWHQAMASP- 152

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID---------PMFPIGEQNALHILRKFCK 224
             +LP P  R+  P   S +P   D P  +++         P+ P G   AL  L +FC+
Sbjct: 153 --ALPAPE-RVVVPPPSSALP---DTPVPSLEALGLRPDAKPIPPGGTAAALKRLEQFCE 206

Query: 225 ---EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
               + YY+  +   P+ + T+ LSPYL  GV+SPRQC  RL
Sbjct: 207 GSASRSYYW--ELSYPSAKVTTGLSPYLKFGVISPRQCLQRL 246


>gi|123966755|ref|YP_001011836.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9515]
 gi|123201121|gb|ABM72729.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9515]
          Length = 378

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 28/227 (12%)

Query: 222 FCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
           F + K+  Y + R+       +   S+LSPY+S  +L   +    +K+++    I     
Sbjct: 14  FLENKIQNYEKFRNFDYGPENVSSVSKLSPYVSHRILLEYELIEEVKKKYQSQKINK--- 70

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFP 334
              ++ E+ WR +++  M   P+V        W + I      +  +A+++   G T   
Sbjct: 71  ---FIEEIYWRIYWKGWMENRPNV--------WVDFISEKNFKYDFEAYEKAINGDTDLS 119

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
             ++ + +L T  ++HN  RM  AS  + +  + W +G  +F   L DGD ASN   W+W
Sbjct: 120 FFNSWVNELKTHNYLHNHTRMWFASTWIFNFGLPWELGANFFFKHLYDGDSASNILSWRW 179

Query: 395 AASTGNDSVPYFRIFNPT----IQGKRFDPQGTFIRH-WLPELNNVP 436
            A        Y  +F+P+        RF+ +    +  +L ELN +P
Sbjct: 180 VAGLQTKGKQY--LFSPSNLRKFSNNRFNVEKINNKQIFLEELNQIP 224


>gi|242812722|ref|XP_002486016.1| DNA photolyase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218714355|gb|EED13778.1| DNA photolyase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 356

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           V W  G E F   L+D + ASN G W W + T   S  Y+R ++P   G+R+DP G F+R
Sbjct: 260 VSWEQGVEVFQEWLIDHEEASNVGNWMWLSCTAFFSQ-YYRCYSPIAFGRRWDPNGDFVR 318

Query: 427 HWLPELNNVPTQYIHAP 443
            + PEL +   +YI+ P
Sbjct: 319 RYCPELKDYDKKYIYEP 335


>gi|319993041|emb|CBY94069.1| cryptochrome [Fagus sylvatica]
          Length = 126

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 6/64 (9%)

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPL 458
           + RI NP  QG +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPL
Sbjct: 3   FDRIDNPQFQGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLHAAGIELGSNYPL 62

Query: 459 PIVD 462
           PIV+
Sbjct: 63  PIVE 66


>gi|209965665|ref|YP_002298580.1| hypothetical protein RC1_2382 [Rhodospirillum centenum SW]
 gi|209959131|gb|ACI99767.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 484

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 88/224 (39%), Gaps = 15/224 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRD---IPAIQG-TSQLSPYLSIGVLSPRQCWNRL 263
           FP      L  L  F       Y  +R+    PA +G  S L PY+   +++  +    +
Sbjct: 66  FPPRRDAGLARLHAFLPRAGQRYAAERNHDRGPADRGNVSGLGPYVRHRLVTEAEVIRHV 125

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
                 L +     A  ++ E  WR +++  +   P V           +   ++D  L 
Sbjct: 126 ------LDVHSFGAAEKFIQEQFWRTYWKGWLELRPQVWRDWLAGVAEARRRLDRDPGLH 179

Query: 324 QAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
             +     G TG    DA   +L   G++HN  RM  AS  +  L + W +G E+F+  L
Sbjct: 180 DCYTDAVAGRTGIDGFDAWAAELRETGYLHNHARMWFASIWIFTLRLPWELGAEFFLRHL 239

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYF--RIFNPTIQGKRFDPQG 422
           LDGD ASN   W+W          Y   R    T    RFDP G
Sbjct: 240 LDGDPASNTLSWRWVGGLQTVGKTYLARRDNIRTYTEGRFDPVG 283


>gi|15559000|gb|AAL02088.1|AF348457_1 cryptochrome 2 [Cucumis melo]
          Length = 61

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 39/59 (66%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD DL S+  GWQ+ + +  D     R+ +P IQG ++DP G +IRHWLPEL  +PT+
Sbjct: 3   LLDADLESDILGWQYISGSLPDGHELERLDDPQIQGSKYDPDGEYIRHWLPELARMPTE 61


>gi|78779842|ref|YP_397954.1| deoxyribodipyrimidine photo-lyase family protein [Prochlorococcus
           marinus str. MIT 9312]
 gi|78713341|gb|ABB50518.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Prochlorococcus marinus str. MIT 9312]
          Length = 384

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 15/187 (8%)

Query: 215 ALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           A ++   F K K+  Y + R+    P  +G+ S+LSP+++  +LS     N +K ++   
Sbjct: 7   AQNVWDNFAKYKINDYSKLRNFDFGPNNEGSVSKLSPFITHRILSEYDLINDIKSKY--- 63

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
             K K+    ++ E+ WR +++  M   P V        +T +   + D  L +    G 
Sbjct: 64  --KIKNST-KFVEEIFWRVYWKGWMENRPKVWQ-----YFTLEKNLDFDYELYENAISGN 115

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           T     ++ + +L    ++HN  RM  AS  + +L + W++G ++F   L DGD ASN  
Sbjct: 116 TELDFFNSWVLELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLL 175

Query: 391 GWQWAAS 397
            W+W A 
Sbjct: 176 SWRWVAG 182


>gi|126727584|ref|ZP_01743417.1| DNA photolyase-like protein [Rhodobacterales bacterium HTCC2150]
 gi|126703174|gb|EBA02274.1| DNA photolyase-like protein [Rhodobacterales bacterium HTCC2150]
          Length = 407

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 3/125 (2%)

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK---QGYTG 332
           S A  ++ E+ WR +++  +  +PSV         T +   + ++ L   +    +G TG
Sbjct: 76  STAMKFIQEVFWRGYFKGWLEQHPSVWNSYKQGVRTAQNRLHSNAELNADYIGAIEGRTG 135

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
               D   R+L   G++HN  RM  AS  +  L + W +G ++F++ L+DGD ASN   W
Sbjct: 136 IACFDHWCRELVETGYLHNHARMWFASIWIFTLRLPWELGADFFLNHLIDGDSASNTLSW 195

Query: 393 QWAAS 397
           +W   
Sbjct: 196 RWVGG 200


>gi|89055300|ref|YP_510751.1| deoxyribodipyrimidine photo-lyase family protein [Jannaschia sp.
           CCS1]
 gi|88864849|gb|ABD55726.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Jannaschia sp. CCS1]
          Length = 403

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 18/194 (9%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQR--DIPAIQG---TSQLSPYLSIGVLSPRQCWNRL 263
           P      L  L +F       Y  +R  D+P  QG    SQLSPYL   +++  +    +
Sbjct: 6   PPTRAAGLERLARFVPAAGRDYAAKRNYDLPG-QGHPHVSQLSPYLRHRLVTEEEVLEAV 64

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            E +        + A  ++ E+ WR +++  +   PS      +  +   ++    + + 
Sbjct: 65  LERYS------LANAEKFVAEVCWRTYWKGWLELRPSA-----WAEYRRDLDHIDRTGVA 113

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +A + G T     +A  R+L   G++HN  RM  AS  +  L + W+ G ++FM  LLDG
Sbjct: 114 KA-EAGQTDIDAFNAWTRELVETGYLHNHARMWFASIWIFTLGLPWQAGADFFMRHLLDG 172

Query: 384 DLASNNGGWQWAAS 397
           D ASN   W+W A 
Sbjct: 173 DPASNTLSWRWVAG 186


>gi|108803508|ref|YP_643445.1| deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764751|gb|ABG03633.1| Deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus
           DSM 9941]
          Length = 464

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 147/365 (40%), Gaps = 39/365 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIAT---PEQWRQHGISARQSHFIYAS 64
           L W++   R   N AL  A   ++A    ++ VF  T   PE       + R   F+   
Sbjct: 27  LYWMQASQRAEHNHALEYAVRQANALGRSLVCVFGLTDGYPE------ANLRHYAFMLEG 80

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  V+K L ++GI F   + S  + ++E        +R   +  +R Y  ++VR  + + 
Sbjct: 81  LADVEKGLRRRGIGFAVRRGSPDEVALE------AGRRAALIVTDRGYLRHQVRWRENVA 134

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAIR 183
                RV     +  VL+P  +  +      + + P   + L + LV     +L  P+  
Sbjct: 135 AEAGCRVT--QVESDVLVPVETASDRREYAARTFRPRVSRHLERFLVGLGTTALRRPSAG 192

Query: 184 LT-GPVTPSNIPRFF-----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
              G +  S+  R       D     +  ++  G + A  +LR+F +E +  Y   RD P
Sbjct: 193 AGLGGLDLSDPGRVLEELDLDRGVGPVGHLYRGGTRAAKRLLRRFLEEGLPGYASGRDQP 252

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMA 296
              G S +S YL  G +SP     R +         P+    ++L EL + RE   + + 
Sbjct: 253 HAGGVSHMSKYLHFGHISPLYVALRARGSGA-----PEEDVGAFLEELVVRRELAVNFVR 307

Query: 297 FYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           + P+         W      E   DS    +  +  ++  T  P  +AAM ++   G++H
Sbjct: 308 YTPNYDSYSCLPEWARSTLEEHRGDSRERVYTRRQLEEAATHDPYWNAAMVEMRHTGYLH 367

Query: 351 NRLRM 355
           N +RM
Sbjct: 368 NHMRM 372


>gi|298162610|gb|ADI59672.1| cryptochrome [Haliotis discus hannai]
          Length = 96

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLV 367
           P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL +
Sbjct: 17  PICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWI 76

Query: 368 DWRIGEEYFMSQLLDGD 384
            W  G + F   LLD D
Sbjct: 77  SWEEGMKVFEELLLDAD 93


>gi|218506724|ref|ZP_03504602.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli Brasil 5]
          Length = 191

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 9/154 (5%)

Query: 117 VRRDKLLEKRLQHR-----VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           +RR      R++H      +  KSF   +L  P  ++  +   Y+VYTPF +AL  ++ +
Sbjct: 14  IRRASPSTPRIEHELEKQAIEVKSFGGQLLHEPSRLMTGSGTPYRVYTPFWRALESSIER 73

Query: 172 A--DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKV 227
              D+ S    A +L G     +       P  A +   ++  GE+ A   LR F ++++
Sbjct: 74  EPLDIPSKLQLASKLPGSENLESWKLLSTQPDWASNFADLWTPGEEGAQEKLRTFIEDRL 133

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
             Y E RD PA   TS LSP+L++G +SP + W+
Sbjct: 134 DGYKENRDYPAKPATSMLSPHLALGEISPARIWD 167


>gi|258405445|ref|YP_003198187.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM
           5692]
 gi|257797672|gb|ACV68609.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM
           5692]
          Length = 469

 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 171/459 (37%), Gaps = 72/459 (15%)

Query: 13  WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W+  D R+ DN AL  A H      A +I VF   P      G + R   F+   L QV 
Sbjct: 29  WMSRDQRLHDNWALLQAQHMARTRQAPLIIVFCLVPSY---SGGARRHFDFMLTGLRQVA 85

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            S ++ GI F        +D    L  +C    +  +  +     + +R     +++ QH
Sbjct: 86  DSAAKLGIPFV---LLTGEDPPGELAGFCRTHAIGTVVMD----FDPLR----TKQQWQH 134

Query: 130 RVI------CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLP 178
                    C   D   ++P         Q Y   T  R  L + L +      +L   P
Sbjct: 135 TFAGHWEGECLEVDAHNVVP--CRWASEKQEYAART-IRPKLQRQLPEFLDPFPELVPHP 191

Query: 179 VPAIRLTGPVTPS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           VP     G + P        R    P       +  GE+ AL + R+F    +  Y E+R
Sbjct: 192 VP---WRGSLLPEPDWEAASRSLAAPEYGPPLSWSSGEETALDLAREFIASGLSAYAEKR 248

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           + P     S LSPYL  G ++P+    R+     D    P      +L EL+ R      
Sbjct: 249 NDPTAGAVSGLSPYLHFGQIAPQ----RVALMARDANWAPAESREGFLEELVIRRELAEN 304

Query: 295 MAFYPSV--CMGKPFIPWTEK-IEWNKDSH-----LLQAWKQGYTGFPIIDAAMRQLNTI 346
             FY  V  C G     W ++ ++ ++  H       + W+   T  P+ +AA +++   
Sbjct: 305 FCFYNPVYDCFGG-LPAWAQQTLDDHRGDHREVVYTFEQWEAARTHDPLWNAAQQEMVQT 363

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL--------LDGDLASNNGGWQWAAST 398
           G MH  +RM    +  K +L +W    E  +S          LDG   +   G  W+   
Sbjct: 364 GKMHGYMRM----YWAKKIL-EWSASPEEALSTAITLNDRYELDGRDPNGYTGVLWSIGG 418

Query: 399 GND----SVPYF---RIFNPTIQGKRFDPQGTFIRHWLP 430
            +D      P +   R  N     ++FD Q  +IR + P
Sbjct: 419 VHDRPWKERPVYGKVRYMNDRGAARKFDVQ-AYIRRFFP 456


>gi|302793095|ref|XP_002978313.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
 gi|300154334|gb|EFJ20970.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
          Length = 345

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 126/314 (40%), Gaps = 38/314 (12%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYA 63
             +VW RNDLR+ DN+AL AA +     VI V+   P+ + +           ++ F+  
Sbjct: 21  ASIVWFRNDLRVHDNEAL-AAANKESLSVIPVYCFDPKDYGKSASGFDKTGPYRAKFLVE 79

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKL 122
            +  ++ +L ++G            + +E L +         L+ +++    E+   DK+
Sbjct: 80  CVANLRDNLRERG----SELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELGMEDKV 135

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLRS 176
                   V  K F  S L     +      M   Y  FR  +    V+A       L+ 
Sbjct: 136 TSALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAPKQLKG 195

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFC--KEKV 227
           LP       G V   +IP   +     +             GE  AL  L+ F       
Sbjct: 196 LPS-----QGDVKAGDIPSLQELGLSPVSAAGQHKRNRMIGGEVEALKRLKSFSLVSPPP 250

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE---EFV-DLLIKPKSG--AFSW 281
               ++  I     +S++SP+L++G LSPR+ +  LK+    FV D L+   SG     W
Sbjct: 251 SKGGKENSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSLVASTSGDSGMQW 310

Query: 282 LN-ELIWREFYRHL 294
           L  EL+WR+F+R +
Sbjct: 311 LVFELLWRDFFRFV 324


>gi|326403400|ref|YP_004283481.1| hypothetical protein ACMV_12520 [Acidiphilium multivorum AIU301]
 gi|325050261|dbj|BAJ80599.1| hypothetical protein ACMV_12520 [Acidiphilium multivorum AIU301]
          Length = 393

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG    D+  R++    ++HN  RM  AS  +  L + W +G ++F+  LLDGD+ASN
Sbjct: 126 GRTGIDCFDSWAREIVARNYLHNHARMWFASIWIFTLRLPWELGADFFLRHLLDGDIASN 185

Query: 389 NGGWQWAASTGNDSVPYF-RIFN-PTIQGKRFDPQG 422
              W+W A        Y  R  N     G RFDP+G
Sbjct: 186 TLSWRWVAGLHTPGKHYLARAENIARFTGGRFDPRG 221


>gi|148259631|ref|YP_001233758.1| deoxyribodipyrimidine photolyase-like protein [Acidiphilium cryptum
           JF-5]
 gi|146401312|gb|ABQ29839.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Acidiphilium cryptum JF-5]
          Length = 396

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG    D+  R++    ++HN  RM  AS  +  L + W +G ++F+  LLDGD+ASN
Sbjct: 129 GQTGIDCFDSWAREIVARNYLHNHARMWFASIWIFTLRLPWELGADFFLRHLLDGDIASN 188

Query: 389 NGGWQWAASTGNDSVPYF-RIFN-PTIQGKRFDPQG 422
              W+W A        Y  R  N     G RFDP+G
Sbjct: 189 TLSWRWVAGLHTPGKHYLARAENIARFTGGRFDPRG 224


>gi|116787609|gb|ABK24574.1| unknown [Picea sitchensis]
 gi|224284157|gb|ACN39815.1| unknown [Picea sitchensis]
          Length = 526

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 137/332 (41%), Gaps = 55/332 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISAR--------QSHFI 61
           +VW RNDLR+ DN+AL +A  N +A  V+ V+   P   R +G S+         ++ F+
Sbjct: 191 IVWFRNDLRVHDNEALSSA--NKEALSVLPVYCFDP---RDYGKSSSGFDKTGPFRATFL 245

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              +  ++ +L ++G           +  +E   S         L+ +++    E+  ++
Sbjct: 246 LECVANLRANLRERGSDLVVRIGRPEEVLVELAKSIG----ADALYAHQEVSHEEIATEE 301

Query: 122 LLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQ--ADL 174
            ++  L+   V  K F  S L  P  +      M   Y  FR+ +    ++ +++    L
Sbjct: 302 KIKSSLEEEGVETKFFWGSTLYHPEDLPFKLQDMPSNYGGFRERVQRLSVRQIIKDPEQL 361

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQ---------AIDPMFPIGEQNALHILRKF--- 222
           + LP       G V P  +P   D             A++     GE  AL  L++F   
Sbjct: 362 KGLPT-----RGDVEPGKVPSLLDLGLNPNFGQDGKTAVNASLTGGESEALQRLKRFAVE 416

Query: 223 CKEKVYYYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRL---------KEEFVDL 270
           C+E+     +     ++ G   + ++SP+L++G LSPR  +  L                
Sbjct: 417 CREQPNKLGKDGSGESLYGANFSCKISPWLAMGCLSPRYMFEELKKSEKISISSSLGKSS 476

Query: 271 LIKPKSGAFSWLN-ELIWREFYRHLMAFYPSV 301
                 G  +WL  EL+WR+F+R +   Y S 
Sbjct: 477 GADSGQGGLNWLKFELLWRDFFRFITKKYGSA 508


>gi|238603470|ref|XP_002395956.1| hypothetical protein MPER_03894 [Moniliophthora perniciosa FA553]
 gi|215467586|gb|EEB96886.1| hypothetical protein MPER_03894 [Moniliophthora perniciosa FA553]
          Length = 114

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDG 383
           AWK+G TGFP IDA MRQL   GW+H+  R   A FL +    + W  G E F   L+D 
Sbjct: 33  AWKEGRTGFPWIDAIMRQLRQEGWIHHLARHSVACFLTRGQCYISWERGAEVFDEYLIDW 92

Query: 384 DLASNNG 390
           D  SN G
Sbjct: 93  DPCSNPG 99


>gi|260431372|ref|ZP_05785343.1| deoxyribodipyrimidine photo-lyase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415200|gb|EEX08459.1| deoxyribodipyrimidine photo-lyase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 461

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 35/228 (15%)

Query: 214 NALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
           N L  L++F      +Y   R+           S LSP+L   +++  +    +      
Sbjct: 70  NGLARLKQFVGRTGRHYASTRNYDFGTERRSNVSGLSPWLRHRLITETEVLAAV------ 123

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT-------EKIEWNKDSHL 322
           L     + A  ++ E+ WR +++  +   PSV        WT          E   D   
Sbjct: 124 LASHNFNAAEKFVQEVFWRTYFKGWLEQRPSV--------WTLYQRDLSHACERLSDDDC 175

Query: 323 LQA----WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           L+A       G TG    D  +R+L   G++HN  RM  AS  +  L + W++G ++F+ 
Sbjct: 176 LRARFSDAVNGNTGIDCFDHWVRELLVTGYLHNHARMWFASIWIFTLRLPWQLGADFFLR 235

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK----RFDPQG 422
            LLDGD ASN   W+W          Y  +  P    K    RF P+G
Sbjct: 236 HLLDGDPASNTLSWRWVGGLHTKGKTY--LARPDNIAKYTEGRFQPKG 281


>gi|15559012|gb|AAL02094.1|AF348463_1 cryptochrome 1 [Musa acuminata]
          Length = 61

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 37/59 (62%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PTQ
Sbjct: 3   LLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTQ 61


>gi|114765681|ref|ZP_01444780.1| DNA photolyase-like protein [Pelagibaca bermudensis HTCC2601]
 gi|114542003|gb|EAU45037.1| DNA photolyase-like protein [Roseovarius sp. HTCC2601]
          Length = 401

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 15/193 (7%)

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLS-PRQCWNRLKEEF 267
           +  L  L  F       Y E R      G     S LSPYL   +++ P      ++   
Sbjct: 9   EAGLRRLEAFRPHMGRDYAELRGFDLGAGGHVHVSGLSPYLRRRLVTEPEVISTAVETHG 68

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
           +D       GA ++++E++WR +++  +   P V          +    ++D+ L     
Sbjct: 69  ID-------GAGTFVSEVLWRSYFKGWLEQRPQVWNDYRDGLRRDLAALDEDADLRDRVA 121

Query: 328 Q---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           +   G TG   +D    +L   G++HN  RM  AS  +    + WR+G ++F+  LLDGD
Sbjct: 122 RVCAGRTGLAGVDDWAAELVQTGYLHNHARMWFASIWIFTRGLPWRLGADFFLRHLLDGD 181

Query: 385 LASNNGGWQWAAS 397
            ASN   W+W A 
Sbjct: 182 PASNTCSWRWVAG 194


>gi|260586482|gb|ACX46123.1| cryptochrome 4 [Sylvia borin]
          Length = 78

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIG 372
           I W KD+  L  WK   TGFP IDA M QL   GW+H+  R   A FL +  L + W  G
Sbjct: 1   ICWYKDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGHLWISWEEG 60

Query: 373 EEYFMSQLLDGDLASNNG 390
            + F   L+D D + N G
Sbjct: 61  MKVFEELLIDADYSINAG 78


>gi|302765677|ref|XP_002966259.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
 gi|300165679|gb|EFJ32286.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
          Length = 345

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 125/314 (39%), Gaps = 38/314 (12%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYA 63
             +VW RNDLR+ DN+AL AA +     VI V+   P+ + +           ++ F+  
Sbjct: 21  ASIVWFRNDLRVHDNEAL-AAANKESLSVIPVYCFDPKDYGKSASGFDKTGPYRAKFLVE 79

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKL 122
            +  ++ +L ++G            + +E L +         L+ +++    E+   DK+
Sbjct: 80  CVANLRDNLRERG----SELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELGMEDKV 135

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------DLRS 176
                   V  K F  S L     +      M   Y  FR  +    V+A       L+ 
Sbjct: 136 TSALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAPKQLKG 195

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFC--KEKV 227
           LP       G V   +IP   +     +             GE  AL  L+ F       
Sbjct: 196 LPS-----QGDVKAGDIPSLQELGLSPVSAAGQHKRNRMIGGEVEALKRLKSFSLVSPPP 250

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE----FVDLLIKPKSG--AFSW 281
               ++  I     +S++SP+L++G LSPR+ +  LK+      +D ++   SG     W
Sbjct: 251 SKGGKENSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSVVASTSGDSGMQW 310

Query: 282 LN-ELIWREFYRHL 294
           L  EL+WR+F+R +
Sbjct: 311 LVFELLWRDFFRFV 324


>gi|157413923|ref|YP_001484789.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9215]
 gi|157388498|gb|ABV51203.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9215]
          Length = 384

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 22/233 (9%)

Query: 215 ALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           A +    F K K+  Y + R+    P  + + S+LSP+++  +LS     N +K ++   
Sbjct: 7   AQNTWENFAKYKINDYAKLRNFDFGPNNESSVSKLSPFITHRILSEYDLINDIKSKY--- 63

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
             K K+    ++ E+ WR +++  M   P V   + FI  +EK   + D  L +    G 
Sbjct: 64  --KSKNST-KFVEEIFWRVYWKGWMENRPKVW--ENFI--SEK-NLDFDYELYKKAINGN 115

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           T     ++ + +L    ++HN  RM  AS  + +L + W++G ++F   L DGD ASN  
Sbjct: 116 TEIDFFNSWVLELKQHNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLL 175

Query: 391 GWQWAASTGNDSVPYFRIFNPT----IQGKRFDPQGTFIRH-WLPELNNVPTQ 438
            W+W          Y  +F+ +        RF+ +    +  +L E N +P +
Sbjct: 176 SWRWVGGLQTKGKQY--LFSSSNLRKFSNNRFNVEKIINKQIYLEESNQIPLE 226


>gi|15559002|gb|AAL02089.1|AF348458_1 cryptochrome 1a [Hordeum vulgare]
          Length = 61

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD DL S+  GWQ+ + +  DS     I NP ++G +FDP G ++R WLPEL  +PT+
Sbjct: 3   LLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDPHGEYVRRWLPELARLPTE 61


>gi|238612106|ref|XP_002398132.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553]
 gi|215474046|gb|EEB99062.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553]
          Length = 228

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 5/162 (3%)

Query: 13  WLR-NDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           W+R  DLRI+DN+AL  A   +  +   ++ +F+ +P+ +  H   AR+  F   +L  V
Sbjct: 40  WMRMADLRISDNRALSLASAQAKEENIPLVVIFVISPQDYIAHDRGARRIDFTLRNLFCV 99

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + SL++  I          ++    + S+         + N +YE++E+RRD  +    +
Sbjct: 100 KDSLAKLPIPLHTFTEQTGENYRRPVISFLQDYSCNSFYANIEYEVDELRRDLKVCALAK 159

Query: 129 HRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
            + +   F  +  ++ PG +   A + Y VY+PF +  I  L
Sbjct: 160 SKGMKAMFVHNKCIIEPGVVTTKANKAYAVYSPFERTWISKL 201


>gi|170782720|ref|YP_001711054.1| putative ATP-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157290|emb|CAQ02475.1| putative ATP-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 408

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 33/205 (16%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQR--DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRL 263
           MF       L  L  F       Y   R  D+ A +   S LSPYL   +++        
Sbjct: 1   MFIPTRAAGLEALHDFVDRAGPAYARDRNHDLGASRDNVSGLSPYLRHRLVT-------- 52

Query: 264 KEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
           ++E V  ++   S   A  ++ E+ WR +++  +   P          W     + +D  
Sbjct: 53  EQEVVAAVLARHSLSAAEKFVQEVFWRTYWKGWLEQNPEA--------WRR---YRRDVE 101

Query: 322 LLQAWK---------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            L A            G +G   +DA +R+L   G++HN  RM  AS  +  L + W++G
Sbjct: 102 ELTAGDLPTGYLDAVGGRSGIDAMDAWVRELVETGYLHNHTRMWFASIWIFTLGLPWQLG 161

Query: 373 EEYFMSQLLDGDLASNNGGWQWAAS 397
            ++F   LLDGD ASN   W+W A 
Sbjct: 162 ADFFHRHLLDGDAASNTLSWRWVAG 186


>gi|15559004|gb|AAL02090.1|AF348459_1 cryptochrome 1b [Hordeum vulgare]
          Length = 61

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 37/59 (62%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PT+
Sbjct: 3   LLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTE 61


>gi|254527101|ref|ZP_05139153.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9202]
 gi|221538525|gb|EEE40978.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9202]
          Length = 384

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 15/187 (8%)

Query: 215 ALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           A  I   F K K+  Y   R+    P  + + S+LSP+++  +LS     N +K ++   
Sbjct: 7   AQSIWDNFAKCKINDYARLRNFDFGPNNESSVSKLSPFITHRILSEYDLINDIKSKY--- 63

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
             K K+    ++ E+ WR +++  M   P V   + FI  +EK   N D  L +    G 
Sbjct: 64  --KIKNST-KFVEEIFWRVYWKGWMENRPKVW--ENFI--SEK-NLNFDYELYKKAINGN 115

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           T     ++ + +L    ++HN  RM  AS  + +L + W++G ++F   L DGD ASN  
Sbjct: 116 TEIDFFNSWVLELKQHNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLL 175

Query: 391 GWQWAAS 397
            W+W   
Sbjct: 176 SWRWVGG 182


>gi|323193108|gb|EFZ78328.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
          Length = 45

 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAH 45


>gi|213584005|ref|ZP_03365831.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
          Length = 46

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAH 45


>gi|66910424|gb|AAH97079.1| Cry4 protein [Danio rerio]
          Length = 418

 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 10/75 (13%)

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--------NY 456
           Y RIF P   G+R DPQG ++R +LP L N P+QYI+ P  W    D+ L        +Y
Sbjct: 266 YTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEP--WKAPEDVQLSAGCIIGKDY 323

Query: 457 PLPIVDHKKACHHTL 471
           P PIV H +A    L
Sbjct: 324 PRPIVSHIEASQRNL 338



 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 11/91 (12%)

Query: 188 VTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIP- 237
           VTP ++ R +  P  A        + ++P GE +AL  L K  + +  V  + + R IP 
Sbjct: 180 VTPVDVDRVYAVPSLAHLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKPRTIPN 239

Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
             +  T+ LSPYLS+G LS R  +++    F
Sbjct: 240 SLLPSTTGLSPYLSLGCLSVRTFYHKYTRIF 270


>gi|224128470|ref|XP_002320340.1| predicted protein [Populus trichocarpa]
 gi|222861113|gb|EEE98655.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 138/332 (41%), Gaps = 60/332 (18%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62
           +VW RNDLR+ DN+ L +A ++S   V+ V+   P   R +G S+         +++F+ 
Sbjct: 88  IVWFRNDLRVHDNECLNSASNDS-MSVLPVYCFDP---RDYGKSSSGFDKTGPYRANFLI 143

Query: 63  ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-R 119
            S+  ++K+L  +G  +V +  +          L           ++ +R+   +EV+  
Sbjct: 144 ESVSDLRKNLQARGSDLVVRVGRPETV------LVELAKAIGADAVYAHREVSHDEVKAE 197

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--D 173
           DK+ E      V  K F  S L     +      M   Y  F++ +    I+  V+   +
Sbjct: 198 DKIEEVMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQVLEIRKTVETLDE 257

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDY---PFQ----AIDPMFPIGEQNALHILRKFCKE- 225
           L+ LP       G V P +IP   D    P Q      +     GE  AL  L+KF  E 
Sbjct: 258 LKGLPS-----RGDVEPGDIPNLLDLGLNPAQDGKATANASMVGGEAEALQRLQKFAAEC 312

Query: 226 ----KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL---------- 271
                         I     + ++SP+L++G +SPR  ++ LK+     +          
Sbjct: 313 QAQPPKGTNGSHDSIYGANFSCKISPWLTVGCISPRSMFDELKKTAARTISGASNCGGGG 372

Query: 272 ----IKPKSGAFSWLN-ELIWREFYRHLMAFY 298
                 P +G  +WL  EL+WR+F+R +   Y
Sbjct: 373 GGGSGSPDTG-MNWLMFELLWRDFFRFITKKY 403


>gi|330814279|ref|YP_004358518.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487374|gb|AEA81779.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 382

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 36/199 (18%)

Query: 215 ALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           AL  L  F    +  Y  +R+          TS LS Y+S  ++  ++    ++  +  L
Sbjct: 7   ALSRLENFSNNNLGKYAAERNFDPGPVNRNNTSLLSQYISHRIIDEQET---IRSAYSKL 63

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK--- 327
              P      ++ E+ WR +++  +   P V              W+  +H L+      
Sbjct: 64  ---PFKKIEKFVQEVFWRTYWKGWLEMRPQV--------------WDDYNHDLKNLHNEL 106

Query: 328 ---------QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
                    +G T    ++  + +L   G++HN  RM  AS  +  L + W++G  +F+ 
Sbjct: 107 TSSNYKEAIEGNTKISCLNDWVLELKEFGYLHNHARMWFASIWIFTLGLPWQLGANFFLK 166

Query: 379 QLLDGDLASNNGGWQWAAS 397
            LLDGD ASN  GW+W A 
Sbjct: 167 HLLDGDPASNTLGWRWVAG 185


>gi|15559014|gb|AAL02095.1|AF348464_1 cryptochrome 2 [Musa acuminata]
          Length = 61

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD DL S+  GWQ+ + +  D     R+ NP + G+++DP G +IR+W+PEL  +PT+
Sbjct: 3   LLDADLESDILGWQYVSGSLPDGHELKRLDNPEVLGQKYDPDGEYIRNWIPELARLPTE 61


>gi|195651415|gb|ACG45175.1| photolyase/blue-light receptor PHR2 [Zea mays]
          Length = 446

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 142/339 (41%), Gaps = 67/339 (19%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           LVW R DLR+ D++  +AA   S + ++ VF+  P  + +           +++F+  S+
Sbjct: 110 LVWFRADLRLHDHEPFHAAAGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSV 168

Query: 66  LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL- 122
             +++SL  +G  +V +             +    + +          Y   EV RD++ 
Sbjct: 169 ADLRRSLRARGGDLVVRV-----------GMPEVVIPELARAAGAEAVYAHGEVSRDEVR 217

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQ-------MYKVYTPFRKAL----IQNLVQ 171
            E+R+Q  V  +  +       GS L H          M   Y  FR+A+    ++ +++
Sbjct: 218 AEERVQKAVEKEGINVKYFW--GSTLYHVEDLPFRLEDMPSNYGGFREAVKGLEVRKVLE 275

Query: 172 A--DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA-----------IDPMFPIGEQNALHI 218
           A  +++ +P+  +     + P +IP   +    A           +      GE  AL  
Sbjct: 276 APEEVKCVPMKNV-----LEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALER 330

Query: 219 LRKFCKE------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE---EFVD 269
           L+KF  E      KV     Q  I     + ++SP+L+ G LSPR  +  LK+   + + 
Sbjct: 331 LKKFAAECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIP 390

Query: 270 LLIKPKS------GAFSWLN-ELIWREFYRHLMAFYPSV 301
               PK+         +WL  EL+WR+F+R +   Y SV
Sbjct: 391 FGSTPKNNDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 429


>gi|126696885|ref|YP_001091771.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9301]
 gi|126543928|gb|ABO18170.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9301]
          Length = 382

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 21/190 (11%)

Query: 215 ALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           A +    F K K+  Y + R+    P  + + S+LSP+++  +LS  +  + +K ++   
Sbjct: 7   AQNTWENFAKYKINDYAKLRNFDFGPNNESSVSKLSPFITHRILSEYELIHDIKSKY--- 63

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWK 327
             K K+    ++ E+ WR +++  M   P V        W   I  N    D  L ++  
Sbjct: 64  --KIKNST-KFVEEIFWRVYWKGWMENRPKV--------WRNFISENNLDFDYELYESAI 112

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G T     ++ + +L    ++HN  RM  AS  + +L + W++G ++F   L DGD +S
Sbjct: 113 NGNTELDYFNSWVHELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDASS 172

Query: 388 NNGGWQWAAS 397
           N   W+W   
Sbjct: 173 NLLSWRWVGG 182


>gi|299135755|ref|ZP_07028939.1| DNA photolyase FAD-binding [Acidobacterium sp. MP5ACTX8]
 gi|298601879|gb|EFI58033.1| DNA photolyase FAD-binding [Acidobacterium sp. MP5ACTX8]
          Length = 487

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 94/232 (40%), Gaps = 26/232 (11%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G   A+  L  FC + +  Y   R+ P + G+S+LSPYL  G L P      L  + V  
Sbjct: 250 GHHAAMKRLHLFCGQMLETYDRDRNHPELDGSSKLSPYLHFGHLGPLTIALALNAQ-VKR 308

Query: 271 LIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLL 323
             K  +   S+ NELI WRE   + + + P          W      E ++D     + L
Sbjct: 309 QPKLAAARDSYFNELIVWRELAVNFVRYQPEYDSPGCADNWARATIAEHDRDEREVLYTL 368

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-----DLLVDWRI--GEEYF 376
              +   T   + +AA  Q+   GWMHN LRM  A  +V+        + W I   + YF
Sbjct: 369 AQLEGARTHDELWNAAQLQMVRYGWMHNYLRMYWAKKIVEWTRNTATAMKWAIYLNDRYF 428

Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSV----PYF---RIFNPTIQGKRFDPQ 421
               LDG   +   G  WA     D      P F   R  +    G++FD +
Sbjct: 429 ----LDGRDPNGYAGVAWAVLGKFDRAWGERPVFGKRRYMSGASTGRKFDAE 476


>gi|304319762|ref|YP_003853405.1| DNA photolyase-like protein [Parvularcula bermudensis HTCC2503]
 gi|303298665|gb|ADM08264.1| DNA photolyase-like protein [Parvularcula bermudensis HTCC2503]
          Length = 424

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%)

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           QA  +G TG    DA  ++L   G++HN  RM  AS  +  L + W +G ++F   LLDG
Sbjct: 138 QAAVEGRTGIDGFDAWTKELIATGYLHNHARMWFASIWIFTLRLPWSLGADFFHRHLLDG 197

Query: 384 DLASNNGGWQWAAS 397
           D ASN   W+W   
Sbjct: 198 DAASNTLSWRWVGG 211


>gi|225437398|ref|XP_002270248.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 454

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 136/334 (40%), Gaps = 60/334 (17%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62
           +VW RNDLR+ DN+ L +A  N    ++ V+   P   R +G S+         ++ F+ 
Sbjct: 121 IVWFRNDLRVHDNECLNSA-SNESMSMLPVYCFDP---RDYGKSSSGFDKTGPYRASFLI 176

Query: 63  ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
            S+  ++++L ++G  +V +  +          L           ++ +R+   +EV+ +
Sbjct: 177 ESVSDLRQNLQKRGSDLVVRIGKPETV------LVELAKAVGADAIYAHREVSHDEVKGE 230

Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------IQNLVQ 171
           + +E  ++   V  K F  S L     +     QM   Y  F++ +        I  L Q
Sbjct: 231 EKIEAAMKEEGVELKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKGLEIRKTIATLDQ 290

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ--AIDPMFPI---------GEQNALHILR 220
             LR LP       G V    IP   D      A  P   +         GE  AL  L+
Sbjct: 291 --LRGLPA-----RGDVEAGEIPSLLDLGLSPSATLPQNGMSTANGSLVGGETEALQRLK 343

Query: 221 KF---CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS- 276
           KF   C+ +         I     + ++SP+L++G LSPR  ++ +K+     +    S 
Sbjct: 344 KFAAECQAQPPKGAANDSIYGANFSCKISPWLAMGCLSPRSMFDEIKKSASRTISASTSK 403

Query: 277 --------GAFSWLN-ELIWREFYRHLMAFYPSV 301
                      +WL  EL+WR+F+R +   Y S 
Sbjct: 404 DGGSGQSDTGMNWLMFELMWRDFFRFITKKYSSA 437


>gi|254451912|ref|ZP_05065349.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
 gi|198266318|gb|EDY90588.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
          Length = 276

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           D   ++L   G++HN  RM  AS  +  L + WR+G ++F   LLDGD A+N   W+WAA
Sbjct: 5   DTWAQELVDTGYLHNHARMWFASIWIFTLGLPWRLGADFFYRHLLDGDAAANTLNWRWAA 64

Query: 397 STGNDSVPY-FRIFN-PTIQGKRFDPQ 421
                  PY  R  N     G RF+P+
Sbjct: 65  GLHTRGKPYPARAQNIAAFTGGRFNPR 91


>gi|212275814|ref|NP_001131008.1| hypothetical protein LOC100192113 [Zea mays]
 gi|194690696|gb|ACF79432.1| unknown [Zea mays]
 gi|194701496|gb|ACF84832.1| unknown [Zea mays]
          Length = 446

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 142/339 (41%), Gaps = 67/339 (19%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           LVW R DLR+ D++  +AA   S + ++ VF+  P  + +           +++F+  S+
Sbjct: 110 LVWFRADLRLHDHEPFHAAAGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSV 168

Query: 66  LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL- 122
             +++SL  +G  +V +  +               + +          Y   EV RD++ 
Sbjct: 169 ADLRRSLRARGGDLVVRVGR-----------PEVVIPELARAAGAEAVYAHGEVSRDEVR 217

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQ-------MYKVYTPFRKAL----IQNLVQ 171
            E+R+Q  V  +  +       GS L H          M   Y  FR+A+    ++ +++
Sbjct: 218 AEERVQKAVEKEGINVKYFW--GSTLYHVEDLPFRLEDMPSNYGGFREAVKGLEVRKVLE 275

Query: 172 A--DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA-----------IDPMFPIGEQNALHI 218
           A  +++ +P+  +     + P +IP   +    A           +      GE  AL  
Sbjct: 276 APEEVKCVPMKNV-----LEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALER 330

Query: 219 LRKFCKE------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE---EFVD 269
           L+KF  E      KV     Q  I     + ++SP+L+ G LSPR  +  LK+   + + 
Sbjct: 331 LKKFAAECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIP 390

Query: 270 LLIKPKS------GAFSWLN-ELIWREFYRHLMAFYPSV 301
               PK+         +WL  EL+WR+F+R +   Y SV
Sbjct: 391 FGSTPKNNDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 429


>gi|242040969|ref|XP_002467879.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
 gi|241921733|gb|EER94877.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
          Length = 447

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 144/332 (43%), Gaps = 53/332 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           LVW R DLR+ D++  +AA   S + ++ VF+  P  + +           +++F+  S+
Sbjct: 111 LVWFRADLRLHDHEPFHAAAGASSS-LLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSV 169

Query: 66  LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
             +++SL  +G  +V +  +          +           ++ + +   +EVR ++ +
Sbjct: 170 ADLRRSLRARGGDLVVRVGRPEVV------IPELARAAGAEAVYAHGEVSRDEVRAEERV 223

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--DLRS 176
           +K ++   I  K F  S L     +  H   M   Y  FR+A+    ++ +++A  +++ 
Sbjct: 224 QKAVEKEGINVKYFWGSTLYHVEDLPFHLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKC 283

Query: 177 LPVPAIRLTGPVTPSNIPRFFDY-----PFQAIDPMFPIG------EQNALHILRKFCKE 225
           +P+  +     + P +IP   +      P  A D    +G      E  AL  L+KF  E
Sbjct: 284 VPMKNV-----LEPGDIPTLAELGLTAPPAMAQDSKPAVGSTLIGGETEALERLKKFAVE 338

Query: 226 ------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE---EFVDLLIKPKS 276
                 K      Q  I     + ++SP+L+ G LSPR  +  LK+     +     PK+
Sbjct: 339 CSMQPNKADKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATRAIPFGSTPKN 398

Query: 277 ------GAFSWLN-ELIWREFYRHLMAFYPSV 301
                    +WL  EL+WR+F+R +   Y SV
Sbjct: 399 NDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 430


>gi|325285641|ref|YP_004261431.1| DNA photolyase FAD-binding protein [Cellulophaga lytica DSM 7489]
 gi|324321095|gb|ADY28560.1| DNA photolyase FAD-binding protein [Cellulophaga lytica DSM 7489]
          Length = 372

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 31/176 (17%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             + LSPY+S GV+S +     + +E +    KP      ++ EL WR++++ +      
Sbjct: 40  AVTHLSPYISRGVISTK----YILKEVLSQGHKPLEIE-KFIQELAWRDYWQQV------ 88

Query: 301 VCMGKPFIPWTEK-IEWNKDSHLLQ----------AWKQGYTGFPIIDAAMRQLNTIGWM 349
                    W  K  E N D    Q          +  +  TG   +D A+R+L   G+M
Sbjct: 89  ---------WIAKGDEINTDLKHTQTPVSNIQIPKSIVEANTGIIAVDNAIRKLEQTGYM 139

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           HN LRM  AS         W +  ++    LLD D ASN   WQW A + ++   Y
Sbjct: 140 HNHLRMYAASLACNIGQSHWLLPAKWMYYYLLDADWASNALSWQWVAGSNSNKKYY 195


>gi|297824863|ref|XP_002880314.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
 gi|297326153|gb|EFH56573.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
          Length = 448

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 141/326 (43%), Gaps = 52/326 (15%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIYAS 64
           W RNDLR+ DN+ L +A ++    V+ V+   P   R +G S+         ++ F+  S
Sbjct: 121 WFRNDLRVHDNECLNSA-NDECVSVLPVYCFDP---RDYGKSSSGFDKTGPFRAQFLIES 176

Query: 65  LLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           + +++K+L  +G  +V +  +          L     +     ++ +R+   +EV+ +  
Sbjct: 177 VSELRKNLQARGSNLVVRVGKPEAV------LVELAKEIGADAVYAHREVSHDEVKAEGK 230

Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFR----KALIQNLVQA--DLR 175
           +E  ++   V  K F  S L     +      +   Y  F+    K  I+  + A   L+
Sbjct: 231 IESAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVHKLEIRKTIAALDQLK 290

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKF---CKE 225
           SLP       G V   +IP   D          Q   P    GE  AL  L+ F   C+ 
Sbjct: 291 SLPS-----RGDVELGDIPSLLDLGISPTARTSQEGKPTMVGGETEALTRLKSFAADCQA 345

Query: 226 KVYYYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKEEF--VDLLIKPKSG--- 277
           ++    ++    ++ G   + ++SP+L++G +SPR  ++ LK+          P++G   
Sbjct: 346 RLSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTTTTPRNGPGD 405

Query: 278 -AFSWLN-ELIWREFYRHLMAFYPSV 301
              +WL  EL+WR+F+R +   Y S 
Sbjct: 406 TGLNWLMYELLWRDFFRFITKKYSSA 431


>gi|323451015|gb|EGB06894.1| hypothetical protein AURANDRAFT_28788 [Aureococcus anophagefferens]
          Length = 183

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFLV+ L V W  G  +F   L+D D A N   WQ A  +G D   +  + +P  +
Sbjct: 1   MVVASFLVEYLRVSWVQGAAWFEETLVDMDPAINAMMWQNAGRSGIDQWNF--VMSP--E 56

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVD 462
               DP G F   ++PEL  +PT+++H P              L   YPL +VD
Sbjct: 57  NASQDPTGKFTLRYVPELAGLPTKHLHRPWTAPAAALAKAGVALGETYPLRVVD 110


>gi|313620255|gb|EFR91705.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378]
          Length = 158

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 16/157 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DNKALY A    D  +I +F   PEQ+ + G  + Q+ F  AS+   Q+
Sbjct: 4   VMWFRRDLRVNDNKALYHAXXEED--LILLFQVNPEQFIK-GSPSHQAFF--ASVAHFQQ 58

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINEVRRDKLLEKRL 127
            L++       H    F + IE L    L++++    K+F+NR        RD+      
Sbjct: 59  ELNKNT-----HLQIMFGEPIELLKQ--LKEKIPTWDKVFFNRDETGYGASRDEAARAFF 111

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
             + +   S+ DS L     +   A + YK++TP+ K
Sbjct: 112 ADKEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYK 148


>gi|123969094|ref|YP_001009952.1| DNA photolyase-like protein [Prochlorococcus marinus str. AS9601]
 gi|123199204|gb|ABM70845.1| DNA photolyase-like protein [Prochlorococcus marinus str. AS9601]
          Length = 384

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 21/190 (11%)

Query: 215 ALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           A +    F K K+  Y + R+    P  + + S+LSP+++  +LS     + +K ++   
Sbjct: 7   AQNTWENFAKYKINDYAKLRNFDFGPNNESSVSKLSPFITHRILSEYDLIHDIKSKY--- 63

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWK 327
             K K+    ++ E+ WR +++  M   P V        W   I  N    D  L +   
Sbjct: 64  --KIKNST-KFVEEIFWRVYWKGWMENRPKV--------WRNFISENNLDFDYELYENAI 112

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G T     ++ + +L    ++HN  RM  AS  + +L + W++G ++F   L DGD +S
Sbjct: 113 NGNTELDFFNSWVHELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDASS 172

Query: 388 NNGGWQWAAS 397
           N   W+W   
Sbjct: 173 NLLSWRWVGG 182


>gi|118484811|gb|ABK94273.1| unknown [Populus trichocarpa]
          Length = 457

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 137/328 (41%), Gaps = 57/328 (17%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62
           +VW RNDLR+ DN+ L +A +N    V+ V+   P   R +G S+         +++F+ 
Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDP---RDYGKSSSGFDKTGPYRANFLI 182

Query: 63  ASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
            S+  ++K+L  +G  +V +  +          L           ++ +R+   +EV+ +
Sbjct: 183 ESVSDLRKNLQARGSDLVVRVGRPETV------LVELAKAIGADAVYAHREVSHDEVKAE 236

Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------IQNLVQ 171
           + +E+ ++   V  K F  S L     +      M   Y  F++ +        I+ L Q
Sbjct: 237 EKIEELMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQ 296

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDY---PFQ----AIDPMFPIGEQNALHILRKF-- 222
             L+ LP       G V P +IP   D    P Q    A +     GE  AL  L KF  
Sbjct: 297 --LKGLPS-----RGDVEPGDIPNLLDLGLNPAQDGKAAANASMVGGETEALQRLNKFAA 349

Query: 223 -CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL---------- 271
            C+ +         I     + ++SP+L++G +S R  ++ LK+     +          
Sbjct: 350 ECQAQPPKGGSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTVSAASNHNSGG 409

Query: 272 IKPKSGAFSWLN-ELIWREFYRHLMAFY 298
                   +WL  EL+WR+F+R +   Y
Sbjct: 410 SSSPGAGMNWLMFELMWRDFFRFITKKY 437


>gi|238606859|ref|XP_002396828.1| hypothetical protein MPER_02855 [Moniliophthora perniciosa FA553]
 gi|215470103|gb|EEB97758.1| hypothetical protein MPER_02855 [Moniliophthora perniciosa FA553]
          Length = 134

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGND---SVPYFRIFNPTIQGKRFDPQGTFIRH 427
           +G E++ S L+D D+ASN G W + A  GND   S    R FNP  Q   +D +G ++R 
Sbjct: 1   LGAEWYESLLIDYDVASNYGNWAYVAGVGNDPRASEGEPRKFNPVKQAFDYDAKGEYVRT 60

Query: 428 WLPELN--NVPTQYIHAPHSWLDKND 451
           W+ E N  N+  +++      L+K+D
Sbjct: 61  WIGEFNGFNMKEEWLFQAWKALEKDD 86


>gi|188996663|ref|YP_001930914.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931730|gb|ACD66360.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 455

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 12/155 (7%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           F  G   A   L++F ++K++ Y E R  P +   S LSPYL  G +SP +    +  E+
Sbjct: 222 FIGGYSQAKRCLKEFIEKKLHKYKEYRSHPELDYQSNLSPYLHFGQISPIEVALEILSEY 281

Query: 268 VDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDS----- 320
                K      S+ NELI WRE  R+   + PS    +    W +K +E +K+      
Sbjct: 282 -----KKDENVDSFFNELIAWRELARNFCYYNPSYNHYEGIPDWAKKTLEDHKNDKRDYV 336

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           + L+ ++   T     +AA  +L   G MHN +RM
Sbjct: 337 YTLEEFENAKTHDEYWNAAQLELLKSGKMHNFMRM 371


>gi|33861916|ref|NP_893477.1| DNA photolyase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640284|emb|CAE19819.1| similar to DNA photolyase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 379

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LSPY+S  VL   +    +K+++    I        ++ E+ WR +++  M   P 
Sbjct: 37  SVSKLSPYISHRVLLEYELLEEVKKKYRSQKINK------FVEEIYWRIYWQGWMENRPK 90

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG---FPIIDAAMRQLNTIGWMHNRLRMIT 357
           V        W   I  N   + ++ +++   G       ++ + +L T  ++HN  RM  
Sbjct: 91  V--------WCNFISENNYEYDIETYEKAINGNSELGFFNSWVNELKTYNYLHNHTRMWF 142

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ--- 414
           AS  + +L + W++G  +F   L DGD ASN   W+W A        Y R  +  ++   
Sbjct: 143 ASTWIFNLGLPWQLGASFFFKHLYDGDAASNLLSWRWVAGLQTKGKQY-RFSSANLRKFS 201

Query: 415 GKRFDPQGTFIRH-WLPELNNVP 436
             RF+ +    R  +L E N +P
Sbjct: 202 NNRFNVEKISNRQIFLEEKNQIP 224


>gi|330814061|ref|YP_004358300.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487156|gb|AEA81561.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 271

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 15/222 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W+R D RI DN ALY  C N   K+ A FI   ++++     + Q  +++ +L+  Q  
Sbjct: 7   LWVREDFRIDDNPALYNIC-NIQEKIEAFFIYDEKKFKNR---SAQRWWLHKTLVNFQNK 62

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HR 130
           L+  GI F+ +     D+ I ++      +++   +YN     +E   +  +EK L  + 
Sbjct: 63  LNNIGISFKVYA----DNEIVYIKKLIKNEKIDNFYYNAIARPDERLIENEIEKNLAIYD 118

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLTGPVT 189
           V  + F+ ++L  P S+       ++V+TP+ R A  Q L   +  S  +   + T    
Sbjct: 119 VNYEKFESNLLQDPFSVRKKDNTPFQVFTPYWRNAEEQYLKNKNFISKKITYKKSTIKED 178

Query: 190 PSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKV 227
            + +      P    F+  +  +  GE  A  +L+ F K+K+
Sbjct: 179 NTAVLNLI-LPKKEWFEKFEKFWTPGEDMAKTLLKDFIKKKL 219


>gi|15226633|ref|NP_182281.1| PHR2 (photolyase/blue-light receptor 2); DNA photolyase
           [Arabidopsis thaliana]
 gi|116248577|sp|Q8LB72|PHR2_ARATH RecName: Full=Blue-light photoreceptor PHR2
 gi|2529668|gb|AAC62851.1| photolyase/blue-light receptor (PHR2) [Arabidopsis thaliana]
 gi|3319288|gb|AAC26199.1| photolyase/blue light photoreceptor PHR2 [Arabidopsis thaliana]
 gi|115646759|gb|ABJ17108.1| At2g47590 [Arabidopsis thaliana]
 gi|330255768|gb|AEC10862.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
          Length = 447

 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 141/326 (43%), Gaps = 52/326 (15%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIYAS 64
           W RNDLR+ DN+ L +A ++    V+ V+   P   R +G S+         ++ F+  S
Sbjct: 120 WFRNDLRVHDNECLNSA-NDECVSVLPVYCFDP---RDYGKSSSGFDKTGPFRAQFLIES 175

Query: 65  LLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           + +++K+L  +G  +V +  +          L     +     ++ +R+   +EV+ +  
Sbjct: 176 VSELRKNLQARGSNLVVRVGKPEAV------LVELAKEIGADAVYAHREVSHDEVKAEGK 229

Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFR----KALIQNLVQA--DLR 175
           +E  ++   V  K F  S L     +      +   Y  F+    K  I+  + A   L+
Sbjct: 230 IETAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLK 289

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKF---CKE 225
           SLP       G V   +IP   D          Q   P    GE  AL  L+ F   C+ 
Sbjct: 290 SLPS-----RGDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQA 344

Query: 226 KVYYYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSG--- 277
           ++    ++    ++ G   + ++SP+L++G +SPR  ++ LK+          P++G   
Sbjct: 345 RLSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGD 404

Query: 278 -AFSWLN-ELIWREFYRHLMAFYPSV 301
              +WL  EL+WR+F+R +   Y S 
Sbjct: 405 TGLNWLMYELLWRDFFRFITKKYSSA 430


>gi|326493834|dbj|BAJ85379.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 448

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 135/338 (39%), Gaps = 45/338 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           LVW R DLR+ D++ L+AA   S + ++ VF+  P  + +           ++ F+  S+
Sbjct: 110 LVWFRADLRLHDHEPLHAAVGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRASFLLDSV 168

Query: 66  LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
             +++SL  +G  +V +  +          +           ++ + +   +E R ++ +
Sbjct: 169 ADLRRSLRARGGDLVVRVGRPEVV------IPELARAAGAEAVYAHGEVSRDECRTEEKV 222

Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VP 180
            K ++   V  K F  S L     +      M   Y  FR+A ++ L    +   P  V 
Sbjct: 223 SKAIEKEGVEVKYFWGSTLYHLDDLPFRLNDMPSSYGGFREA-VKGLEVRKVLDAPEEVK 281

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKE---- 225
            + +   + P +IP   +    A   M              GE  AL  L+KF  E    
Sbjct: 282 CVPMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAECCMQ 341

Query: 226 --KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL---IKPKSG--- 277
             K      Q  I     + ++SP+L+ G LSPR  +  LK+  +  +     PK G   
Sbjct: 342 PNKAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGT 401

Query: 278 ---AFSWLN-ELIWREFYRHLMAFYPSVCMGKPFIPWT 311
                +WL  EL+WR+F+R +   Y S        P T
Sbjct: 402 SDAGTNWLMFELLWRDFFRFVTKKYSSAQKTSEVAPAT 439


>gi|237756180|ref|ZP_04584748.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691667|gb|EEP60707.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 455

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 12/155 (7%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           F  G   A   L++F ++K++ Y E R  P +   S LSPYL  G +SP +    +  E+
Sbjct: 222 FIGGYNQAKRCLKEFIEKKLHKYKEYRSHPELDYQSNLSPYLHFGQISPIEVVLEILSEY 281

Query: 268 VDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDS----- 320
                K      S+ NELI WRE  R+   + P+    +    W +K +E +K+      
Sbjct: 282 -----KKDENVDSFFNELIVWRELARNFCYYNPNYNHYEGIPDWAKKTLEDHKNDKRDYV 336

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           + L+ ++   T     +AA  +L   G MHN +RM
Sbjct: 337 YTLEEFENAKTHDEYWNAAQLELLKSGKMHNYMRM 371


>gi|21592984|gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana]
          Length = 447

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 140/326 (42%), Gaps = 52/326 (15%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIYAS 64
           W RNDLR+ DN+ L +A ++    V+ V+   P   R +G S+         ++ F+  S
Sbjct: 120 WFRNDLRVHDNECLNSA-NDECVSVLPVYCFDP---RDYGKSSSGFDKTGPFRAQFLIES 175

Query: 65  LLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           + +++K+L  +G  +V +  +          L     +     ++ +R+   +EV+ +  
Sbjct: 176 VSELRKNLQARGSNLVVRVGKPEAV------LVELAKEIGADAVYAHREVSHDEVKAEGK 229

Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFR----KALIQNLVQA--DLR 175
           +E  ++   V  K F  S L     +      +   Y  F+    K  I+  + A   L+
Sbjct: 230 IETAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLK 289

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKF---CKE 225
           SLP       G V   +IP   D          Q   P    GE  AL  L+ F   C+ 
Sbjct: 290 SLPS-----RGDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQX 344

Query: 226 KVYYYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSG--- 277
           +     ++    ++ G   + ++SP+L++G +SPR  ++ LK+          P++G   
Sbjct: 345 RXSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGD 404

Query: 278 -AFSWLN-ELIWREFYRHLMAFYPSV 301
              +WL  EL+WR+F+R +   Y S 
Sbjct: 405 TGLNWLMYELLWRDFFRFITKKYSSA 430


>gi|83859814|ref|ZP_00953334.1| DNA photolyase-like protein [Oceanicaulis alexandrii HTCC2633]
 gi|83852173|gb|EAP90027.1| DNA photolyase-like protein [Oceanicaulis alexandrii HTCC2633]
          Length = 414

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK---QGYTGFP 334
           A  ++ E+ WR +++  +    +V               ++D  L Q ++   +G TG  
Sbjct: 81  AEKFIQEVCWRTYWKGWLELRSAVWADYKAEREQAFTAVSEDQALAQRYEAAIEGRTGLE 140

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
             DA   +L   G++HN  RM  AS  +  L + W +G ++F+  L+DGD ASN   W+W
Sbjct: 141 GFDAWATELMQTGYLHNHARMWFASIWIFTLDLPWVLGADHFLRHLIDGDAASNTLSWRW 200


>gi|327342158|gb|AEA50866.1| cry2-2 [Populus tremula]
          Length = 226

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 12/59 (20%)

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---------DLSLNYPLPIVD 462
           IQG +FDP+G ++R WLPEL  +P ++IH  H W D +         +L +NYP PI+D
Sbjct: 1   IQGSKFDPEGEYVRRWLPELARMPAEWIH--HPW-DASIAVLKAAGVELGINYPKPIID 56


>gi|15559006|gb|AAL02091.1|AF348460_1 cryptochrome 2 [Hordeum vulgare]
          Length = 61

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 36/59 (61%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           LLD D  S+  GWQ+ +    D     R+ NP +QG+++DP G ++R W+PEL  +P +
Sbjct: 3   LLDADRESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIPELARMPGE 61


>gi|48716245|dbj|BAD23781.1| putative cryptochrome 2 [Oryza sativa Japonica Group]
          Length = 298

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 112/265 (42%), Gaps = 17/265 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL +A    D  V+ VFI  P    Q         ++  SL  + +
Sbjct: 8   VVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLSQ 65

Query: 71  SLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128
           SL   G  +      S  +  +  +DS       T+L YN  Y+ ++ VR DK+ ++   
Sbjct: 66  SLESLGCPLVLIRAESTLEALLRCIDSV----GATRLVYNHLYDPVSLVRDDKIKKELSA 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----LRSLPVPAIR 183
             +  +SF+  +L  P  I + +   +  +  + +  ++  + A       + +PVP + 
Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGLE 181

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +  ++        ++ + +       G +NA  +L +F    +  Y +       
Sbjct: 182 SVRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVEG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLK 264
             TS LSPYL  G +S R+ +  ++
Sbjct: 242 ATTSLLSPYLHFGEVSVRKVYQLVR 266


>gi|296121685|ref|YP_003629463.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
           3776]
 gi|296014025|gb|ADG67264.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
           3776]
          Length = 493

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 155/387 (40%), Gaps = 49/387 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+ +  R+  N  L  A H +    + + I  P   R    S R  HF+   + +   
Sbjct: 28  LYWMISARRLQWNFGLQQAVHRAQTLNLPLVILEPIGCRAKWSSVRFHHFVIEGMAEHHA 87

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              ++GI +  +        +  +++Y   Q+   +  +        R  + L +R+   
Sbjct: 88  LCQERGIAYHPYVEPEPGHGVGLVEAYA--QKAAAVITDDFPCYFLPRMVQTLGQRIDVP 145

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-------ADLRSLPVPAIR 183
           + C   D + + P    +    Q++     FR+ L +N+         AD  + P+ ++ 
Sbjct: 146 LEC--VDSNGIFP----MRATDQVFTTAHAFRRFLQKNIKPYLSEFPVADSLAGPILSME 199

Query: 184 LTG-------PVTPSNIPR----FFDYPF-QAIDPM-FPIGEQNALHILRKFCKEKVYYY 230
           + G       P TP  + R        P  Q + P  F  G + A   + +F K ++  Y
Sbjct: 200 IPGQIARKWSPATPGLLNRDASALAQLPIDQTVQPAAFRGGLKAAQEAVARFFKSRLPRY 259

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL--KEEFV-DLLIKPKSG---------- 277
            + R+ P  +  S LSPYL  G +S  + ++RL  KE +  + L +  SG          
Sbjct: 260 ADDRNNPEQEAASGLSPYLHFGHVSAHEVFSRLAAKESWKPEHLPEKASGSREGWWQMSP 319

Query: 278 -AFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWT-EKIEWNKDSHL-----LQAWKQG 329
            A ++L+ELI WRE   +  +        +    W  + +E +   H      L   +  
Sbjct: 320 AAEAFLDELITWREVGYNFTSHREDYDQYESLPAWARQSLEKHAGDHRPSLYDLHQLEIA 379

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            T   + +AA RQL   G MHN LRM+
Sbjct: 380 QTHDELWNAAQRQLVREGRMHNYLRML 406


>gi|149195752|ref|ZP_01872809.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera
           araneosa HTCC2155]
 gi|149141214|gb|EDM29610.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera
           araneosa HTCC2155]
          Length = 359

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 35/173 (20%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LS Y+S G++S R  ++ L +   DL    K     ++ EL WR++++    ++ +
Sbjct: 33  AVSYLSAYISRGIISTRTVYDSLIKRGYDLEKIEK-----FVQELAWRDYWQSQWNYHGA 87

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT--GFP-----------IIDAAMRQLNTIG 347
                            K +H L+  +  Y   G P           + + A++QL T G
Sbjct: 88  -----------------KINHDLRHSQMAYNKHGMPSRLVDEKCSIQVFNTAIKQLKTTG 130

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           ++HN +RM  A          W     +    L+DGD ASN   WQW A   N
Sbjct: 131 YLHNHMRMYLAMSTCNIGGYHWHDPARWMYYHLIDGDWASNALSWQWVAGCLN 183


>gi|320109156|ref|YP_004184746.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4]
 gi|319927677|gb|ADV84752.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4]
          Length = 479

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 97/447 (21%), Positives = 170/447 (38%), Gaps = 64/447 (14%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W++   R  DN AL  A   +D   + V             + R  HF+   LL V+  L
Sbjct: 37  WMQRAQRGRDNAALNLAVQIADELGLPVVTYFAGISNFPHANLRHYHFLQQGLLDVENDL 96

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRLQHRV 131
           +++GI F             + D++        +    +  +  + R   ++ K ++  V
Sbjct: 97  AERGIGFVLRNAPECSPVQFFADAHA------AIVIGDENPLRAMERWRSMVAKNIE--V 148

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
              + D  V++P   +L  A    +   P  K  +   +        V +I  + P    
Sbjct: 149 PYWTIDTDVIVP-SKLLEKAQYAARTIRPRLKKFLPEFLHL------VKSIDNSAPAKEW 201

Query: 192 NIPRFFDYPFQAID----------PMFPIGEQNA--------LHILRKFCKEKVYYYVEQ 233
             PR   +   +ID           + P+ E N         LH+  K     +  Y  +
Sbjct: 202 QQPRGLRHDKLSIDMTKQWPDLDRSVLPVDEWNGGSGAAYKRLHLFTK----NLGNYDRE 257

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYR 292
           R+ P   GTS LSP+L  G + P      +++          SG  ++L++LI WRE   
Sbjct: 258 RNHPETDGTSMLSPFLHFGHIGPLTIALAVRKAIQTNPAAKVSGE-AYLDQLITWRELCI 316

Query: 293 HLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTI 346
           + + + P+        PW +    E  +D     + L+  ++  T   + +A+ RQ+   
Sbjct: 317 NFVKYEPNYDTAACADPWAKVTIGEHARDERSPLYSLEQLERAETYDELWNASQRQMVYR 376

Query: 347 GWMHNRLRMITASFLVK-----DLLVDWRI--GEEYFMSQLLDGDLASNNGGWQWAASTG 399
           GWMHN +RM  A  +++     D+  +  +   + YF    LDG   +  G   WA    
Sbjct: 377 GWMHNYMRMYWAKKILEWSPSVDVAFERAVHLNDRYF----LDGRDPNGYGSIAWALVGK 432

Query: 400 NDSV----PYF---RIFNPTIQGKRFD 419
            D      P F   R  +    G++FD
Sbjct: 433 FDRAWGERPIFGKIRYMSGASTGRKFD 459


>gi|78188846|ref|YP_379184.1| DNA photolyase, class 2 [Chlorobium chlorochromatii CaD3]
 gi|78171045|gb|ABB28141.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
           chlorochromatii CaD3]
          Length = 459

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 112/255 (43%), Gaps = 48/255 (18%)

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG-----EQNALHILRKFCKEKV 227
           +L +LP P   LT P  P N  +   + F A   + P+G     E  A   L+ F ++K+
Sbjct: 183 ELEALPQP---LTEP--PVNWQKLRSH-FHADASVAPVGWLTAGEAGAHATLQCFVQQKL 236

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK----PKSGAFSWLN 283
             Y  QR+ P+++ TS+LSPYL  G +S          +FV L +K    P+    ++L 
Sbjct: 237 NGYATQRNDPSLEATSRLSPYLHFGQIS---------TQFVALQVKAAHAPQEDKDAFLE 287

Query: 284 ELIWR----EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS------HLLQAWKQGYTGF 333
           ELI R    + Y H  A Y  +  G P   W ++      +      +  +A++Q  T  
Sbjct: 288 ELIVRRELSDNYCHYNASYDRLS-GIP--AWAQETLARHATDPRDYIYSHEAFEQAKTHD 344

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL-------LDGDLA 386
           P+ +AA  +L   G +H  +RM    +  K +L   R  EE F   L       LDG   
Sbjct: 345 PLWNAAQHELLQSGIIHGYMRM----YWAKKILEWSRTPEEAFEIALWLNDRYALDGREP 400

Query: 387 SNNGGWQWAASTGND 401
           +   G  W+    +D
Sbjct: 401 NGYVGVAWSIGGVHD 415


>gi|327342144|gb|AEA50859.1| cry1-1 [Populus tremula]
          Length = 268

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 6/54 (11%)

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIV 461
           +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV
Sbjct: 2   EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIV 55


>gi|158333885|ref|YP_001515057.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
 gi|158304126|gb|ABW25743.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
          Length = 465

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 18/205 (8%)

Query: 159 TPFRKALIQ-NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
            PF    +Q + +  DL+SL +  I       P       D     +  +F  G   A  
Sbjct: 178 VPFASTPVQHSSLHLDLKSLDLSNIEAVLAKLP------LDCSVPPVSSLFQGGTTRAKE 231

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
           IL KF ++    Y + R+ P     S +S YL  G +SP      L  +   +   P+  
Sbjct: 232 ILEKFLQKSFAIYADHRNQPQTDDVSYMSQYLHFGQISPLY----LALQIQSMGNVPRDN 287

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH-------LLQAWKQGY 330
             +++ ELI R       A+Y         +P   K   +   H        L+   +  
Sbjct: 288 VDTYIEELIVRRELAMNFAYYTPDYDAYSCLPNWAKTTLDNHRHDPRTPCYSLEQLDESR 347

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRM 355
           T  P  +AAMR++   G+MHN +RM
Sbjct: 348 TEDPYWNAAMREMKHTGYMHNYMRM 372


>gi|77964004|gb|ABB13343.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
          Length = 286

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 6/55 (10%)

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSL--NYPLPIVD 462
           +G +FDP G ++R WLPEL  +PT++IH    AP S L    + L  NYPLPIV+
Sbjct: 1   EGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVE 55


>gi|167563425|ref|ZP_02356341.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis EO147]
          Length = 188

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  +++  +VW R+DLR++D+ AL  A  +    + A         R  G +AR   +
Sbjct: 1   MSAVLSIAPAVVWFRDDLRVSDHPALVRAAESGRPVIGAYVFDECAGGRPLGGAARW--W 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G            D  + + S+        +++NR+Y + +   D
Sbjct: 59  LHGSLRALDAALAALGSRLVLLS----GDEADTITSFAAALGAGAVYWNRRYALAQRAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
             ++  L+ R I  ++F+ S+L  PG ++  + + Y+V+T + +A ++  V A
Sbjct: 115 NTVQTALEARGIDVETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHA 167


>gi|325971354|ref|YP_004247545.1| DNA photolyase FAD-binding protein [Spirochaeta sp. Buddy]
 gi|324026592|gb|ADY13351.1| DNA photolyase FAD-binding protein [Spirochaeta sp. Buddy]
          Length = 459

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 151/378 (39%), Gaps = 46/378 (12%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQS 58
           M    A S  + W++   R+  N+AL  A   ++A  K + VF      +   G   R  
Sbjct: 13  MPVNKAGSFVVYWMQAAQRVRQNEALAFAIEQANALGKPLVVFFGLERSFA--GAQERHY 70

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L +VQ+ L   GI    H     D  I  L    L   ++ L  +R Y     R
Sbjct: 71  RFMLEGLAEVQQQLRLLGIPLWVHG----DGIIPGLAK--LVPFISVLVTDRAY----TR 120

Query: 119 RDKLLEKRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRK-----------AL 165
            ++   K++   V C  ++   +V++P  ++ +   + Y   T  RK             
Sbjct: 121 VERQWRKQVASFVSCPFYEVETNVIVPLEAVSDK--EEYSAATLRRKIESMIAYFAQIVA 178

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
           IQ  +   L   P+ A    G  T   +          + P    GE  A   L +F + 
Sbjct: 179 IQKPLVDGLSEEPLFACVNLGD-TAMVLKALALGKMGGVCPHLVGGEIQAHQKLSQFIES 237

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNE 284
           K+  Y   R+ P+ Q +S LSPYL  G +S    ++ ++E E  D+ +        +L E
Sbjct: 238 KLSGYAIHRNDPSQQFSSGLSPYLHFGQISAIDIYHAVREIEVEDVPV--------FLEE 289

Query: 285 LIWR-EFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHL--LQAWKQGYTGFPIID 337
           LI R E   + + F P     +    W +K     E ++   L      +Q  T  P  +
Sbjct: 290 LIVRRELAYNFVWFNPLYDAYEGLPSWAQKSLAFHEQDRRPILYSFAELEQAQTHDPYWN 349

Query: 338 AAMRQLNTIGWMHNRLRM 355
           AA ++L  +G MHN LRM
Sbjct: 350 AAQKELTELGTMHNYLRM 367


>gi|71083008|ref|YP_265727.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062121|gb|AAZ21124.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 496

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 18/206 (8%)

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY------VEQRDIPA 238
           T  + P     F D+P    D        + + +L  F KEK   +      V Q+D   
Sbjct: 202 TKKLKPIIEKLFKDHPGSTNDFWLATEYNDVVKLLDFFIKEKSNLFGDYEDAVNQKD--N 259

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAF 297
           I   S LSPY+++G+++P     ++ E      I+  S    ++ ++I WREF R +   
Sbjct: 260 ILFHSALSPYINLGLITPEIIIQKILEFHKKHKIRMNSLE-GYIRQIIGWREFMRGIYQG 318

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y      K F        +N +  + ++W +G TG P +D A++     GW H+  R++ 
Sbjct: 319 YSDEMETKNF--------FNHERKMKKSWYEGTTGLPPLDHAIKNAVNHGWSHHIERLMI 370

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDG 383
            S ++    V   I  ++FM   +D 
Sbjct: 371 LSNIMNLCEVKPTIVYKWFMEMFVDS 396


>gi|300708917|ref|XP_002996629.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01]
 gi|239605945|gb|EEQ82958.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01]
          Length = 473

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 91/225 (40%), Gaps = 41/225 (18%)

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
           NIP++   P +     +  G    L ++  F   K + Y E R+ P + G S LSPY+ +
Sbjct: 215 NIPKY--EPAKYYQGTYSAG----LKVMDDFFNNKFHIYNECRNNPDVDGLSNLSPYIHL 268

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKPFIPW 310
           G+LSP++      E+F     K K     ++ E+ IWRE   H           K +   
Sbjct: 269 GILSPQKIIKLAYEKFYK---KDKDNLDGYVAEIFIWRETSEHFCYH------NKDYDNI 319

Query: 311 TEKIEWNKDS----------HLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
              +EW +DS          HL   +  + G T     +AA  QL  +  +H  +RM  A
Sbjct: 320 MGALEWARDSLHEHAKDEREHLYTKEELEFGKTNDSFWNAAENQLLKLNKIHGYVRMYWA 379

Query: 359 SFLVKDLLVDW--------RIGEEYFMSQLLDGDLASNNGGWQWA 395
             LVK     W        +IG E      +DG+  +   G  W 
Sbjct: 380 KQLVK-----WTKTPEEAVKIGIELNDKYSIDGNDPNGYTGVMWC 419


>gi|88604444|ref|YP_504622.1| deoxyribodipyrimidine photolyase [Methanospirillum hungatei JF-1]
 gi|88189906|gb|ABD42903.1| Deoxyribodipyrimidine photo-lyase type II [Methanospirillum
           hungatei JF-1]
          Length = 448

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 143/377 (37%), Gaps = 67/377 (17%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFI-------ATPEQWRQHGISARQSHF 60
           L W+++ +R   N AL  A   S+     +I VF        ATP  +R          F
Sbjct: 21  LYWMQSAVRTRYNHALEYAIERSNELKKPLIVVFCLDHSYPEATPVHYR----------F 70

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++  L  V +SL+++GI FQ    S  D      D  C+   VT   + R   +    R 
Sbjct: 71  LWEGLQDVNRSLTERGIGFQILSGSPVDIIPRIADDACMM--VTDQGWTR---LQREWRQ 125

Query: 121 KLLEKRLQHRVICKSFDDSVLLP--------PGSILNHALQMYKVYTPFRKALIQNLVQA 172
           K+++      VI ++   ++++P          S      ++ +    F   LI   VQ 
Sbjct: 126 KVIDTAPCKVVIVET---NLIVPVHVASPKEEWSAGTFRPKITRQLPAFLHPLICRHVQG 182

Query: 173 D------LRSLPVPAIR-LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
           +         LPV A +  TG   P +    F           P GE  A H L  F  E
Sbjct: 183 ESTDCEPFTGLPVGAEQQFTGKPLPEDTSTQF----------LPGGENAADHYLSAFLSE 232

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
            +  Y    + P    TS LS YL  G +SP     R+ E        P  G  ++L +L
Sbjct: 233 TIDRYEATHNDPTAHATSYLSAYLHFGHISPLDIALRVMEH-------PGPGTNAFLEQL 285

Query: 286 IWREFYRHLMAFYPSVCMGKPFIP-WTEK------IEWNKDSHLLQAWKQGYTGFPIIDA 338
           I R    H   +Y  +      +P WT K      I+  + S+    +++  T     +A
Sbjct: 286 IVRRELSHNFVWYNPLYDHYEGLPEWTRKSLEKHRIDTREYSYTPADFEECRTHDRAWNA 345

Query: 339 AMRQLNTIGWMHNRLRM 355
               +   G++H  LRM
Sbjct: 346 MQLSMIRTGYLHGYLRM 362


>gi|83816766|ref|YP_445872.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
 gi|83758160|gb|ABC46273.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
          Length = 462

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 137/368 (37%), Gaps = 43/368 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+    R   N AL  A H++    + + +           + R   F+   L + ++
Sbjct: 24  LYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFPEATLRHHTFLLEGLQETKQ 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +G+     + +  D ++              L  +R Y    +R  K    R+   
Sbjct: 84  RLADRGLKLVVREGAPDDVAL------AHAGAAAVLVTDRGY----LRHQKQWRARVAEE 133

Query: 131 VICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPVP 180
             C+    +  V++P  ++ + A    +   P     ++          V+     L + 
Sbjct: 134 APCRVEQVEGDVVVPVETVTDKAEYAARTIRPKIHEHLERCLQLPEPVPVETPSLDLDID 193

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           + R    +         D    A+  ++P G   A  IL  F  E +  Y E R+     
Sbjct: 194 SGRSLDDIAAVTDQMDLDRGVGAVSDLYPGGVSEAEAILDDFLAEHLDGYDENRNQIHSH 253

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP 299
             S +S YL  G +SP   W  L ++ V     P+S   S++ EL+  RE   + + F P
Sbjct: 254 AVSHMSKYLHYGQISP--VW--LAQQ-VRRAEGPESDIESYIEELVVRRELTMNHVHFRP 308

Query: 300 SVCMGKPFIPWTEKIEWNKDS------------HLLQAWKQGYTGFPIIDAAMRQLNTIG 347
                   +P     EW ++S            + L   + G T  P  +AAM+++   G
Sbjct: 309 DTYDSYTCLP-----EWARESLAEHADDEREYVYSLDELEGGTTHDPYWNAAMKEMRETG 363

Query: 348 WMHNRLRM 355
           +MHN +RM
Sbjct: 364 YMHNYMRM 371


>gi|187478088|ref|YP_786112.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N]
 gi|115422674|emb|CAJ49201.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N]
          Length = 407

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 14/121 (11%)

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           +  TG P+ID A+R L   G++HN  R+  AS++V    V WR   ++ +  LLDGDL S
Sbjct: 122 EARTGLPVIDLAVRTLYASGYLHNHARLWLASYVVHARQVHWRCAADWLLGHLLDGDLGS 181

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N+  WQW A T + + PY  +FN      RF P+  +           P   I AP+  L
Sbjct: 182 NHLSWQWVAGTAS-AKPY--LFN-AENVARFAPEAWY----------SPGTPIDAPYERL 227

Query: 448 D 448
           D
Sbjct: 228 D 228


>gi|126735514|ref|ZP_01751259.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
 gi|126714701|gb|EBA11567.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
          Length = 487

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 83/201 (41%), Gaps = 18/201 (8%)

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLK 264
           P F      A   L  F  + +  Y  +R+  A + G S+LSPYL  GVL PR+    ++
Sbjct: 233 PDFEPSAAAARSALDGFVTDALATYPYRRNNAADKAGVSRLSPYLHFGVLGPRKMTAAVR 292

Query: 265 EEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP---SVCMGKPFIPWTEKIEWNKDS 320
              V    K     + +L+EL+ WRE++ H +A+     +     P  P T     + D 
Sbjct: 293 AADVTANAK-----WKYLDELLTWREYF-HYLAYQDDNFASFRSLPDAPRTSLEAHSSDP 346

Query: 321 ----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK---DLLVDWRIGE 373
               + L     G TG    +AA RQ    G+MHN LRM     ++K   D    W    
Sbjct: 347 RPTLYALTDLVHGNTGDETWNAAQRQWLATGYMHNNLRMYWGKQIIKWTPDPETAWDTAC 406

Query: 374 EYFMSQLLDGDLASNNGGWQW 394
                  LDG   +  G  +W
Sbjct: 407 YLNDRLALDGRDPATYGNMKW 427


>gi|163840007|ref|YP_001624412.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
 gi|162953483|gb|ABY22998.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
          Length = 230

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 13/161 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VWLR++LR+TDN AL  AC      V+ V     E  R  G + R   +++ SL  +  
Sbjct: 20  MVWLRDNLRLTDNPALAKACATGPTAVLYVLDEVSEGIRPLGGATR--WWLHHSLQNLAA 77

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            +++ G      +     ++ E +     +     +F+NR+Y   E   D  L+  L + 
Sbjct: 78  EIAELGGSLILRR----GNAAEIVPEVAQKTGAEAVFWNRRYGGAERAIDSELKSALTKA 133

Query: 130 RVICKSFDDSVLLPP------GSILNHALQMYKVYTPFRKA 164
               +SF  ++L  P      G+    +   YKV+TPF +A
Sbjct: 134 DFTVQSFQANLLFEPWTIQPKGAGPAESSAHYKVFTPFWRA 174


>gi|213428165|ref|ZP_03360915.1| hypothetical protein SentesTyphi_22875 [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
          Length = 45

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 30/39 (76%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP 45
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTP 39


>gi|167998494|ref|XP_001751953.1| AtCRY1/HY4-like cryptochrome blue light photoreceptor protein
           [Physcomitrella patens subsp. patens]
 gi|162697051|gb|EDQ83388.1| AtCRY1/HY4-like cryptochrome blue light photoreceptor protein
           [Physcomitrella patens subsp. patens]
          Length = 413

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 6/57 (10%)

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVD 462
           +++G RFDP G ++R W+PEL  +P +++H    AP S L     +L  NYP PIV+
Sbjct: 102 SVEGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVE 158


>gi|294507782|ref|YP_003571840.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
 gi|294344110|emb|CBH24888.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
          Length = 462

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 75/368 (20%), Positives = 137/368 (37%), Gaps = 43/368 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+    R   N AL  A H++    + + +           + R   F+   L + ++
Sbjct: 24  LYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFPEATLRHHTFLLEGLQETKQ 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +G+     + +  D ++              L  +R Y    +R  +    R+   
Sbjct: 84  RLADRGLKLVVREGAPDDVAL------AYAGAAAVLVTDRGY----LRHQRQWRARVAEE 133

Query: 131 VICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--------VQADLRSLPVP 180
             C+    +  V++P  ++ + A    +   P     ++          V+     L + 
Sbjct: 134 APCRVEQVEGDVVVPVETVTDKAEYAARTIRPKMHEHLERCLQLPEPVPVETPSLDLDID 193

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           + R    +         D    A+  ++P G   A  IL  F  E +  Y E R+     
Sbjct: 194 SGRSLDDIEAVTDQMDLDRGVGAVSDLYPGGVSEAEAILDDFLAEHLDGYDENRNQIHSH 253

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP 299
             S +S YL  G +SP   W  L ++ V     P+S   S++ EL+  RE   + + F P
Sbjct: 254 AVSHMSKYLHYGQISP--VW--LAQQ-VRRAEGPESDIESYIEELVVRRELTMNHVHFRP 308

Query: 300 SVCMGKPFIPWTEKIEWNKDS------------HLLQAWKQGYTGFPIIDAAMRQLNTIG 347
                   +P     EW ++S            + L   + G T  P  +AAM+++   G
Sbjct: 309 DTYDSYTCLP-----EWARESLAEHADDEREYVYSLDELEGGTTHDPYWNAAMKEMRETG 363

Query: 348 WMHNRLRM 355
           +MHN +RM
Sbjct: 364 YMHNYMRM 371


>gi|47212597|emb|CAF93039.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 642

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 29/141 (20%)

Query: 354 RMITASFLVK-DLLVDWRIG---------------------EEYFMSQLLDGDLASNNGG 391
           R   A FL + DL + W  G                      + F   LLD D + N G 
Sbjct: 454 RRAVACFLTRGDLWISWECGMKVGGAAWSRRRRRRLSARLLPQVFEELLLDADWSVNAGS 513

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           W W + +      +F+ + P   G+R DP G +IR ++P L + P +YI+ P +  +   
Sbjct: 514 WMWLSCSAFFQQ-FFKCYCPVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAVQ 572

Query: 452 ------LSLNYPLPIVDHKKA 466
                 + ++YP P++  ++ 
Sbjct: 573 KAANCVVGVDYPRPMIQPRRG 593



 Score = 43.5 bits (101), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 130/335 (38%), Gaps = 58/335 (17%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SVH  W R  LR+ DN AL  A   +D+ +  V++  P       +   +  F+  +L  
Sbjct: 5   SVH--WFRKGLRLHDNPALQEALSGADS-LRCVYVLDPWFAGAANVGINRWRFLLEALED 61

Query: 68  VQKSLSQ---------------------------KGIVFQYHQCSN--FDDSIEWLD-SY 97
           +  SL +                           + +VFQ    +      S   L  S 
Sbjct: 62  LDCSLKKLNSRLFVVRGQPTDVFPRLLKVGAGPVRSLVFQSADRAGAMIRASCRCLILSV 121

Query: 98  CLQQ--RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY 155
           C+ Q  +VT+L +          RD  + K  Q   +     +S  L     L+  ++M 
Sbjct: 122 CVPQEWKVTRLTFEYDPRAYGKERDGAIIKMAQQFGVETIVRNSHTL---YNLDRIVEMN 178

Query: 156 KVYTPFRKALIQNLV-QADLRSLPVPAI------RLTGPVTPS-----NIPRFFDYPFQ- 202
               P      Q +V + +L   P+P++      +   PV  +     +IP   +  F+ 
Sbjct: 179 NNSPPLTFKRFQTIVSRLELPRRPLPSVTQQQMDKCGTPVADNHDQLYSIPSLEELGFRT 238

Query: 203 -AIDP-MFPIGEQNALHILRKFCKEKVYY----YVEQRDIPAIQGTSQLSPYLSIGVLSP 256
             + P ++  GE  AL  LRK  ++KV+     +            + LSPYL  G LS 
Sbjct: 239 GGLAPAVWRGGESEALERLRKHLEKKVWVSHLEHSRANTCSLYASPAGLSPYLRFGCLSC 298

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           R  +  L+E ++  L K  S   S   +L+WREF+
Sbjct: 299 RVFYYNLREHYIR-LCKGCSPPLSLFGQLLWREFF 332


>gi|94971523|ref|YP_593571.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553573|gb|ABF43497.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter
           versatilis Ellin345]
          Length = 446

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 161/419 (38%), Gaps = 43/419 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           + W++   R  DN AL  A   ++A K+  V    P  +  H  + R   F+   +  + 
Sbjct: 1   MYWMQRAQRAFDNPALDVAVQAANALKLPCVIFFAPVPFYPHA-NLRHYAFLQQGIPDIA 59

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRLQ 128
           +   ++ I F   +          L  +C + +   L    +  + E+R   ++  K+L 
Sbjct: 60  EMAEERDIGFVLRRFPEHS-----LIKFCDEVKAA-LVIGDENPMRELREWREIAAKKL- 112

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-----------DLRSL 177
            RV   + D  V++P   +L       ++  P  KA  + L+               R L
Sbjct: 113 -RVPLWTVDADVIVP-SKLLGKEQYAARIIRPRLKAHFKELLVPCENPRAHVKWHAARGL 170

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                R T  +T        D   + +D  F  G + AL +L +F K  +  Y E+ +  
Sbjct: 171 QQLDWRGTEDITEG---WEIDRSVKPVDS-FHGGTREALRLLDEFVKHGLTRYPERHNQA 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA 296
              GT++LSPYL  G + P      +++  V     P+     +L+++I WRE   +++ 
Sbjct: 227 DENGTARLSPYLHFGHIGPHTVALAVEKSKV-----PREAKDDFLDQVITWRELAINMVH 281

Query: 297 FYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQGYTGFPIID----AAMRQLNTIGWMH 350
           F P     +    W  K   E  KD   +Q   +        D    AA  Q+   GWMH
Sbjct: 282 FNPLYDTLECGENWAHKTLGEHAKDPRPIQYTPKQLEAAETYDDLWNAAQLQMVHAGWMH 341

Query: 351 NRLRMITASFLV---KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           N +RM  A  ++   K   V +           LDG   +   G  WA   G    P+F
Sbjct: 342 NYMRMYWAKKILEWSKSPQVAYNTAVYLNDKYFLDGRDPNGYAGIAWAI-VGKFDRPWF 399


>gi|315425180|dbj|BAJ46850.1| deoxyribodipyrimidine photo-lyase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 360

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 36/177 (20%)

Query: 201 FQAIDPMFPI-----GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
           F +I+ + P+     GE  A   L  F  E++  Y  +R  P  +  S+LSPYL  G++S
Sbjct: 111 FGSIEFVEPVKDVVGGEDEAHKRLETFVGERLDRYAAERSDPGSEACSELSPYLRYGMIS 170

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
           P Q   R+ E       +      S +NEL +WRE  R+          G+ + P+ EK 
Sbjct: 171 PVQVLKRVFE----YRRRGDVNVESLINELVVWRELARN----------GEVYNPFFEKY 216

Query: 315 ----EWNKDSHLLQAWKQGYTGFPIID------------AAMRQLNTIGWMHNRLRM 355
               EW +++  + A  +    + + +            AA ++L   G +HN +RM
Sbjct: 217 EGLPEWARETLSIHAGDRREQVYSMSELERADTHDVYWNAAQQELLATGKIHNYMRM 273


>gi|224068346|ref|XP_002302716.1| predicted protein [Populus trichocarpa]
 gi|222844442|gb|EEE81989.1| predicted protein [Populus trichocarpa]
          Length = 471

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 135/340 (39%), Gaps = 67/340 (19%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62
           +VW RNDLR+ DN+ L +A +N    V+ V+   P   R +G S+         +++F+ 
Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDP---RDYGKSSSGFDKTGPYRANFLI 182

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  ++K+L  +G              +E   +         ++ +R+   +EV+ ++ 
Sbjct: 183 ESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAI----GADAVYAHREVSHDEVKAEEK 238

Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--------IQNLVQAD 173
           +E+ ++   V  K F  S L     +      M   Y  F++ +        I+ L Q  
Sbjct: 239 IEELMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQ-- 296

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDY---PFQ------------------AIDPMFPIGE 212
           L+ LP       G V P +IP   D    P Q                  A +     GE
Sbjct: 297 LKGLPS-----RGDVEPGDIPNLLDLGLNPAQGTCCIVSLNTCQSQDGKAAANASMVGGE 351

Query: 213 QNALHILRKF---CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
             AL  L KF   C+ +         I     + ++SP+L++G +S R  ++ LK+    
Sbjct: 352 TEALQRLNKFAAECQAQPPKGGSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATR 411

Query: 270 LLIKP----------KSGAFSWLN-ELIWREFYRHLMAFY 298
            +                  +WL  EL+WR+F+R +   Y
Sbjct: 412 TISAASNHNSGGSSSPGAGMNWLMFELMWRDFFRFITKKY 451


>gi|298530238|ref|ZP_07017640.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509612|gb|EFI33516.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 448

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 15/200 (7%)

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYY 230
           D++  P PA   TG V P  + +  D   + I P+     G   A  +L  F   ++  Y
Sbjct: 180 DVKPHPYPAQAGTG-VDPDGLLQEMDLD-KTITPVRWLSPGPAGAGEVLDDFMAHRLSLY 237

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WRE 289
            EQR+ P +Q  S LSPYL  G  S ++   ++K++    L  P     ++L ELI  RE
Sbjct: 238 HEQRNDPNMQVLSNLSPYLHFGHTSAQRVALQVKKQ----LDTPVQSREAFLEELIVRRE 293

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQL 343
              +   +  +    +    W +K   +   DS    +  QA +QG T  P+ +AA  ++
Sbjct: 294 LSDNFCHYNQNYDNFQGLPAWAQKTLDKHRSDSRDYLYEPQALEQGLTHDPLWNAAQTEM 353

Query: 344 NTIGWMHNRLRMITASFLVK 363
              G MH  +RM  A  +++
Sbjct: 354 VKSGKMHGYMRMYWAKKILE 373


>gi|125543822|gb|EAY89961.1| hypothetical protein OsI_11521 [Oryza sativa Indica Group]
          Length = 451

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 138/342 (40%), Gaps = 53/342 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           LVW R DLR+ D++ L+AA   S + ++ VF+  P  + +           ++ F+  S+
Sbjct: 113 LVWFRADLRLHDHEPLHAAVGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRAGFLLDSV 171

Query: 66  LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
             +++ L  +G  +V +  +          +           +F + +   +E R ++ +
Sbjct: 172 ADLRRGLRARGGDLVVRVGRPEVV------IPELARAAGAEAVFAHGEVSRDECRAEEKV 225

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--DLRS 176
            K ++   I  K F  S L     +      M   Y  FR+A+    ++ ++ A  +++ 
Sbjct: 226 SKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLDAPEEVKC 285

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQA-----------IDPMFPIGEQNALHILRKFCKE 225
           +P+  +     + P  IP   +    A           +      GE  AL  L+KF  E
Sbjct: 286 VPMKNV-----LEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFASE 340

Query: 226 ------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL---IKPKS 276
                 K      +  I     + ++SP+L+ G LSPR  +  LK+     +     PK+
Sbjct: 341 CCMQPNKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTPKN 400

Query: 277 G------AFSWLN-ELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G        +WL  EL+WR+F+R +   Y S        P T
Sbjct: 401 GDGTSDAGTNWLMFELLWRDFFRFITKKYSSAQKTSEVAPAT 442


>gi|115452953|ref|NP_001050077.1| Os03g0343400 [Oryza sativa Japonica Group]
 gi|108708083|gb|ABF95878.1| photolyase/blue-light receptor PHR2, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113548548|dbj|BAF11991.1| Os03g0343400 [Oryza sativa Japonica Group]
 gi|125586213|gb|EAZ26877.1| hypothetical protein OsJ_10801 [Oryza sativa Japonica Group]
          Length = 459

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 138/342 (40%), Gaps = 53/342 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           LVW R DLR+ D++ L+AA   S + ++ VF+  P  + +           ++ F+  S+
Sbjct: 121 LVWFRADLRLHDHEPLHAAVGAS-SSLLPVFVFDPRDFGKSPSGFDRTGPYRAGFLLDSV 179

Query: 66  LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
             +++ L  +G  +V +  +          +           +F + +   +E R ++ +
Sbjct: 180 ADLRRGLRARGGDLVVRVGRPEVV------IPELARAAGAEAVFAHGEVSRDECRAEEKV 233

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--DLRS 176
            K ++   I  K F  S L     +      M   Y  FR+A+    ++ ++ A  +++ 
Sbjct: 234 SKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLDAPEEVKC 293

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQA-----------IDPMFPIGEQNALHILRKFCKE 225
           +P+  +     + P  IP   +    A           +      GE  AL  L+KF  E
Sbjct: 294 VPMKNV-----LEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFASE 348

Query: 226 ------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL---IKPKS 276
                 K      +  I     + ++SP+L+ G LSPR  +  LK+     +     PK+
Sbjct: 349 CCMQPNKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTPKN 408

Query: 277 G------AFSWLN-ELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G        +WL  EL+WR+F+R +   Y S        P T
Sbjct: 409 GDGTSDAGTNWLMFELLWRDFFRFITKKYSSAQKTSEVAPAT 450


>gi|258611843|ref|ZP_05711678.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           R2-503]
 gi|258606567|gb|EEW19175.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           R2-503]
          Length = 164

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 27/177 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           ++W R DLR+ DNKALY AC   D  ++ +F   P Q+    I+   SH   +AS+   +
Sbjct: 4   VMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQF----ITGSPSHQGFFASVAHFK 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV------TKLFYNRQYEINEVRRDKLL 123
           + + +       H    F + IE     C QQ         K+++NR       +RD+  
Sbjct: 58  QEIDKTA-----HLQIMFGEPIE-----CFQQLKDSLPSWDKVYFNRDETGYGAKRDEAA 107

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---IQNLVQADLRS 176
           +    + ++  ++F DS L     +     + YK++T   K      +N VQ+D ++
Sbjct: 108 QAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTLIIKMARRNKRNAVQSDFKA 164


>gi|295113008|emb|CBL31645.1| Deoxyribodipyrimidine photolyase [Enterococcus sp. 7L76]
          Length = 256

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 33/256 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRV----TKLFYNRQYEINEVRRDKL 122
           + + Q+    I+             E LD +   +R       +++N        +RD+ 
Sbjct: 61  ERIDQEAHLQIMVG-----------EPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQ 109

Query: 123 LEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             +  +   I   SF D+ L     I  +    Y+V+TP+      N  +   +  P+P 
Sbjct: 110 AMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPY-----YNKWKEAPKETPIPV 164

Query: 182 IR-----LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                   +  + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD 
Sbjct: 165 SYTAEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDF 224

Query: 237 PAIQGTSQLSPYLSIG 252
           P    TS LS +   G
Sbjct: 225 PYQDQTSHLSTFFKNG 240


>gi|73668073|ref|YP_304088.1| deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri
           str. Fusaro]
 gi|72395235|gb|AAZ69508.1| Deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri
           str. Fusaro]
          Length = 462

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 149/373 (39%), Gaps = 47/373 (12%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W+  D R+ DN AL  A   +    + VF+      +  G   RQ  F+   L +V+ +L
Sbjct: 22  WMSRDQRVEDNWALLFARKIALEADVPVFVVFCLVDKFLGAIRRQYEFMLKGLQEVEATL 81

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
           ++K I F + Q    +   ++++ Y +   +T        + + +R  +   +++   + 
Sbjct: 82  ARKKIPFFFLQGDPEEKIPDFIEKYGIGTLIT--------DFSPLRIKRTWTEKVASSIK 133

Query: 133 CKSF--DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--- 187
              F  D   ++P         Q Y  +T FR  L++ L+   L   P     L  P   
Sbjct: 134 VPFFEVDAHNVVPCWEASKK--QEYAAHT-FRPKLLR-LLPEFLTEYPELETNLEFPEIA 189

Query: 188 VTPSNIPRFFDYPFQAID------------------PMFPIGEQNALHILRKFCKEKVYY 229
           V      RF +     I                    +F  GE  A  ++ +F   K+  
Sbjct: 190 VRSGKAERFSEVQKSGIGTRLPGEFLEKKAGFLPDLALFEAGETAARKVMDEFLTNKLDS 249

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR- 288
           Y   R+ P     S LSPYL  G +S ++   ++++   DL  K       +L+EL+ R 
Sbjct: 250 YSSLRNDPTKDALSNLSPYLHFGQISAQRVALKVEKAKADLESKR-----VFLDELLVRK 304

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHL--LQAWKQGYTGFPIIDAAMRQ 342
           E   +   + P       F  W +K       ++ SH+  L+  + G T  P+ +A+  +
Sbjct: 305 ELADNFCYYNPFYDSFDGFPDWAKKTLNSHRRDQRSHIFTLEELETGRTYDPLWNASQIE 364

Query: 343 LNTIGWMHNRLRM 355
           L   G MH+ +RM
Sbjct: 365 LIRKGKMHSYMRM 377


>gi|320166331|gb|EFW43230.1| photolyase [Capsaspora owczarzaki ATCC 30864]
          Length = 559

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           +S +SPYL  G +SPR+ +  + + ++D  + P     S L +L WREF+  + A  P+ 
Sbjct: 233 SSVMSPYLRFGCVSPRRFFFEINKVYIDSGVTPTQPPVSLLGQLYWREFFYLVAAGTPNF 292

Query: 302 --CMGKPFIPWTEKIEWNKDSHLLQAW 326
               G P     ++I+W+ +   L AW
Sbjct: 293 DRAAGNPIC---KQIQWDVNPEYLAAW 316



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 10/71 (14%)

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--------LSLNYPLPIVDHKKACHH 469
           +DP+G F+R ++P L N P++YI+ P  W    +        + ++YP PIVDH++ C  
Sbjct: 318 YDPEGKFVRRFVPALRNFPSEYIYMP--WSAPLEVQREAGCIVGVDYPKPIVDHEQVCRT 375

Query: 470 TLNQYYAAKKQ 480
            + +   A  Q
Sbjct: 376 NMERMRDAYAQ 386


>gi|303245763|ref|ZP_07332046.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ]
 gi|302493026|gb|EFL52891.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ]
          Length = 453

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 131/376 (34%), Gaps = 66/376 (17%)

Query: 13  WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W+  D R  DN AL  A      S A ++ VF   P      G + RQ  F+ A L + +
Sbjct: 24  WMSRDQRAADNWALLHAASLAGESGAPLVVVFALAPAY---PGATRRQYAFMLAGLAETE 80

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L    I               +L S      VT               D L  KR+  
Sbjct: 81  AALRAHSIPLAVLTGEPGFTVPAFLHSVDAGVCVTDF-------------DPLRVKRVWK 127

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             +        +  PG+++   +  + V   F  +  +    A LR    P I    P  
Sbjct: 128 AAVA-------VASPGALVE--VDAHNVAPCFLASQKREYAAATLR----PKIHRLLPEF 174

Query: 190 PSNIPRFFDYPFQAIDPMFPI-----------------------GEQNALHILRKFCKEK 226
               P    +P   +D   P+                       G   A  +L  F +++
Sbjct: 175 LKPFPDLPTFPAANLDGFAPVDWRAAADFVQADPSVPPVTGIVPGSAAATQVLDDFLRDR 234

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL- 285
           +  Y  +R+ P    TS LSPY   G L+P+    R     ++   + K GA ++L EL 
Sbjct: 235 LEGYAARRNDPNAGATSGLSPYFHFGQLAPQ----RAALATLEARSRAKEGADAFLEELV 290

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAA 339
           + RE   +   + P     +    W  K       DS    +  + +    T   + +AA
Sbjct: 291 VRRELADNFCLYEPEYDSFEALPEWARKTLAAHAADSRPYLYDRETFAAATTHSALWNAA 350

Query: 340 MRQLNTIGWMHNRLRM 355
            RQL+  G +H  +RM
Sbjct: 351 QRQLSREGRIHGYMRM 366


>gi|189499730|ref|YP_001959200.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1]
 gi|189495171|gb|ACE03719.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1]
          Length = 451

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 138/364 (37%), Gaps = 43/364 (11%)

Query: 13  WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W+  D R  +N AL  A      ++  +I  F   P        + R   F+   L+QV+
Sbjct: 23  WMSRDQRAENNWALLFAEQLSMQNNQPLIVAFNLVPSYPEA---TLRHYDFMLKGLMQVE 79

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE----- 124
           + L    I F      N +  I    + C    V   F     +I+E  ++K+LE     
Sbjct: 80  QQLEALNIPFLV-LSGNPEREIPRFTASCRAGAVVTDF--SPLKISETWKNKVLEHIPIP 136

Query: 125 --KRLQHRVI-CKSFDDSVLLPPGSI---LNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             +   H ++ C++  + +     +I   +N  L+ +    P  K       Q+  R   
Sbjct: 137 FYEVDAHNIVPCRTASNKLEFSARTIRPKINRLLETFLTGFPELKG------QSPERKSA 190

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           VP +          I R    P   IDP    G   A   L+KF   ++  Y + R+ P 
Sbjct: 191 VPPVEWNKLYETLRINRAV-APVTWIDP----GGDAATKTLKKFIDHRLASYPKLRNDPN 245

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAF 297
               S LSPYL  G +S +     ++         P+S    +L EL I RE   +   +
Sbjct: 246 AHAVSDLSPYLHFGQISAQHVAREIQASDA-----PRSAKDVFLEELVIRRELADNYCLY 300

Query: 298 YPSVCMGKPFIPW-TEKIEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                  K   PW  E +E ++       +     ++  T  P+ +AA ++L   G MH 
Sbjct: 301 NKHYDSLKGIHPWAAETLERHRTDTREFLYTADDLEKASTHDPLWNAAQKELCNTGKMHG 360

Query: 352 RLRM 355
            LRM
Sbjct: 361 YLRM 364


>gi|332295845|ref|YP_004437768.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM
           14796]
 gi|332178948|gb|AEE14637.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM
           14796]
          Length = 443

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 13/153 (8%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G + A  IL  F  +K  YY + R+ P  +  S +SPYL  G +SP +  + L     ++
Sbjct: 216 GYKEAKKILDYFVSKKFKYYKDNRNNPEKESESNISPYLHFGNISPLEILDTL-----EI 270

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI--PWTEKIEW-NKDS-----HL 322
             K     +S+  E++ R    H   +Y +       +   W  K  + +KD      + 
Sbjct: 271 FDKSSENYYSFFEEMVIRRELAHNFTYYSNDLNNLENLLPAWAFKTFYEHKDDKREYVYS 330

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           L+ ++   T   I +A+ R+L   G +HN +RM
Sbjct: 331 LEEFENSKTHDEIWNASQRELKKRGKIHNYMRM 363


>gi|78186406|ref|YP_374449.1| DNA photolyase, class 2 [Chlorobium luteolum DSM 273]
 gi|78166308|gb|ABB23406.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium luteolum DSM
           273]
          Length = 495

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 106/253 (41%), Gaps = 27/253 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+  N+AL+ A   +    A +I  F  +P      G + RQ  F+   L++
Sbjct: 21  IYWMSRDQRVEQNRALHYARFRAVADGAPLIVAFTLSPSF---IGATFRQYDFMLRGLME 77

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSI---EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           V++ L +  I F   +    +  +   E + S C+    + L  +R+++           
Sbjct: 78  VERRLRELEIGFVLLEGDPAEAIVRFRESIGSGCVVTDYSPLRISRRWKATAA------- 130

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 V+    D   ++P   ++    Q Y   T FR  + + L +  +   PV  +  
Sbjct: 131 --AALPVLFIEVDAHNIVP--CLMASPKQEYSART-FRPKVNRLLGEFLIALPPVERVPA 185

Query: 185 TGPVTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           + P  P++  R       + P   +    P GE  A+  L  F +E++ +Y E+R+ P  
Sbjct: 186 SEPWAPTDWERVRARLPVERPAGTVRHPQP-GEAAAIRHLETFIRERLAWYGERRNDPNA 244

Query: 240 QGTSQLSPYLSIG 252
             TS LSPYL  G
Sbjct: 245 DATSGLSPYLHFG 257


>gi|312881041|ref|ZP_07740841.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans
           DSM 12260]
 gi|310784332|gb|EFQ24730.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans
           DSM 12260]
          Length = 464

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 64/156 (41%), Gaps = 14/156 (8%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEE 266
            P G       L  F +E +  Y   R+ P  +G S LSPYL  G +SP R  W  L+ +
Sbjct: 226 LPPGSAAGQARLEAFLREGLPRYARDRNDPLREGQSGLSPYLHFGQISPQRAAWEVLRAD 285

Query: 267 FVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS----- 320
                  P     ++L EL+ R E   +     P     + F  W  K      S     
Sbjct: 286 ------APPEDREAFLEELVVRGELAENFCLHTPGYDTVEAFPDWARKTLAAHASDRRPA 339

Query: 321 -HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            + L+  ++G T  P+ +AA R+L   G M   LRM
Sbjct: 340 LYSLRELEEGRTHDPLWNAAQRELVLTGRMPGYLRM 375


>gi|113955504|ref|YP_730566.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           CC9311]
 gi|113882855|gb|ABI47813.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           CC9311]
          Length = 468

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 141/348 (40%), Gaps = 41/348 (11%)

Query: 28  AACHNSDAKVIA--VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI-VFQYHQC 84
             C N    +IA  + +    QW    I  R+      S+L  QK L  KG  VF     
Sbjct: 17  GICDNRSIALIADGLILGGDPQWPL-TIHPRKLQLHQESMLAYQKHLELKGFSVFTLTPK 75

Query: 85  SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP 144
            N   S        L  ++    Y   Y +N +  D LL KR+++ +  +    +VL P 
Sbjct: 76  QNQQTS-------DLLNQLVDSGYKTFYLVNPI--DDLLSKRVRNTLERRHCVLNVL-PT 125

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP---------SNIPR 195
             +L     M + +   RK ++ N  Q   + L V       PV             +P+
Sbjct: 126 PMLLTPTEVMDEHFNGRRKPMMANFYQMQRKRLGVLIDDQGAPVGGRWSYDADNRKKLPK 185

Query: 196 FFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLS 250
             + P + +ID   P+  ++A   L  F ++++  +    D  +    +   S L+P L+
Sbjct: 186 GINVPEEPSID--LPVDHRSAKQWLDTFLEQRLSGFGTFEDAISSKHRVMWHSVLTPMLN 243

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIP 309
           +G+L+P+Q  N+      +    P +    +L ++I WREF   +   +        F  
Sbjct: 244 LGLLTPQQVLNQ-TLAVAETSEIPLNSLEGFLRQIIGWREFMAAMYLRHGVTMRNSNF-- 300

Query: 310 WTEKIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                 WN D   +  A+ QG TG P ID A+++    G+ H+  R++
Sbjct: 301 ------WNFDDRPIPDAFYQGTTGLPPIDDAIKRALNTGYCHHIERLM 342


>gi|332703027|ref|ZP_08423115.1| DNA photolyase, FAD-binding protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553176|gb|EGJ50220.1| DNA photolyase, FAD-binding protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 465

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 93/431 (21%), Positives = 165/431 (38%), Gaps = 78/431 (18%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  + R+ DN  L  A     + D  +   +   P+ + + G+  RQ  F+ A L +
Sbjct: 23  LYWMHREHRVNDNWGLLRARELAVDRDVPLAVAYGLAPD-YLEAGL--RQYAFLLAGLRE 79

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+  L   GI F +    +  + I  L  Y     +   F     +   ++R  L     
Sbjct: 80  VEHGLEAIGIPF-FLLLGDPAEVIPDLARYLAVGAIITDF-----DPLRIKRGWLKRIAA 133

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + ++  +  D   ++P  ++        + + P     I  L+   L ++P         
Sbjct: 134 EVQIAVEEVDSRNIVPCRAVSEKKEWAARTFRP----KIHRLLPEFLTAIPT-------- 181

Query: 188 VTPSNIPRFFDYPF----QAIDPMF-----------PIGEQNALHILRKFCKEKVYYYVE 232
           + P  +P   D+P     QA+D +              GE  A  +L +F  E++  Y  
Sbjct: 182 LKPQTVPWNLDWPANDWSQAMDSLKVSSDVGRLSGPRSGELAAGALLAEFTAERLSGYAV 241

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI----KPKSGAFSWLNELI-W 287
            R+ P    TS+LS +L  G+LS ++         V L++     P+    ++L +L+  
Sbjct: 242 GRNDPNGGATSRLSAHLHFGMLSAQR---------VALVVIQADAPQEDKDAFLEQLVVR 292

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---------LLQAWKQGYTGFPIIDA 338
           RE   +     P+    + F  W  +     D+H              +Q  T  P+ +A
Sbjct: 293 RELAENFCLHEPAYDSAESFPDWARR---TLDAHQGDPRPYLYSRDELEQACTHDPLWNA 349

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL--------LDGDLASNNG 390
           A R++   G+MH  LRM    +  K +L +W    E  M+          LDG   +   
Sbjct: 350 AQREMLATGYMHGYLRM----YWAKKIL-EWSKSPEEAMAVAVRLNDRWELDGRDPNGYA 404

Query: 391 GWQWAASTGND 401
           G  WA    +D
Sbjct: 405 GLAWAIGGVHD 415


>gi|145544633|ref|XP_001458001.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425820|emb|CAK90604.1| unnamed protein product [Paramecium tetraurelia]
          Length = 453

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 112/290 (38%), Gaps = 37/290 (12%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W++   R   N AL  A   ++ + I +F       +    + R  HF+   L Q++ SL
Sbjct: 23  WIQASQRTKYNHALELAIQKANQEQIPLFCFFGLT-KYPAANQRPYHFMLEGLQQLKTSL 81

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
           + + I+F   + S  D +I       + Q    L  +  Y    +R  K   K++   + 
Sbjct: 82  ADRKILFGVAKQSPDDLAI------SIAQNAKLLIVDCGY----LRIQKQWRKKVADTID 131

Query: 133 CK--SFDDSVLLPPGSILNHALQMYKVYTP--------FRKALIQNLVQADLRSLPVPAI 182
           C+    +  VL+P            K   P        F K L +  +   +  LP    
Sbjct: 132 CQFIQVETDVLVPVEQASQKEEWAAKTIRPKIQSLTKYFAKELNEETLVKQMDKLPFQEY 191

Query: 183 RLTGPVTPSNIPRFFDY----PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            +      SNI +  D        +I   F  GE  A   L +F  +K+  Y + R+ P+
Sbjct: 192 DI------SNITKVIDDLGVDKSVSIVQQFKGGEIEAQKRLEEFLNKKLKNYAKNRNDPS 245

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           +  TS LSPYL  G++SP   +         +   P     S+L ELI R
Sbjct: 246 LNATSNLSPYLHFGMISPLHIY------LEAMKFPPSESRESFLEELIVR 289


>gi|183221861|ref|YP_001839857.1| putative deoxyribodipyrimidine photo-lyase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911933|ref|YP_001963488.1| deoxyribodipyrimidine photolyase-like protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776609|gb|ABZ94910.1| Deoxyribodipyrimidine photolyase-related protein [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780283|gb|ABZ98581.1| Putative deoxyribodipyrimidine photo-lyase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 499

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 22/196 (11%)

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-----YYYVEQRDIPAIQGTSQLSPYLS 250
           F ++P    D   P   + A   L+ F KE+      Y      D P +Q  S L+P+L+
Sbjct: 214 FPNHPGNTKDFWLPTDRKGAKLWLQDFLKERFVQFGPYEDAFSLDFPFLQ-HSVLTPFLN 272

Query: 251 IGVLSPRQCWNRLKEEFVDLLIK---PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKP 306
           +G+L+P++    + E  +D   K   P      ++ ++I WREF R     Y +    + 
Sbjct: 273 VGLLTPKE----VIESTLDYAKKNSVPMESLEGFIRQIIGWREFIR---GIYQNFGAKQE 325

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
            I +     +     L + W  G TG P +D  +++ N  G+ H+  R++    L+    
Sbjct: 326 SINY-----FGHKRKLTKHWYDGTTGIPPLDFVIQKCNLYGYAHHIERLMVVGSLMVLFE 380

Query: 367 VDWRIGEEYFMSQLLD 382
           +D +    +FM   +D
Sbjct: 381 IDPKDAYRWFMEMFID 396


>gi|322433858|ref|YP_004216070.1| DNA photolyase FAD-binding protein [Acidobacterium sp. MP5ACTX9]
 gi|321161585|gb|ADW67290.1| DNA photolyase FAD-binding protein [Acidobacterium sp. MP5ACTX9]
          Length = 470

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 102/247 (41%), Gaps = 31/247 (12%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G    L  L++F  + +  Y  QR+ P   GTS +SPYL  G L P Q      +     
Sbjct: 229 GTHAGLAQLKRFTTKLLGDYEVQRNKPEADGTSSMSPYLHYGHLGP-QTIALAVDAAAKA 287

Query: 271 LIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLL 323
             K +S   S+ NELI WRE   + + F       +    W +K   E  +D     +  
Sbjct: 288 NPKLQSARDSYFNELIAWRELAVNFVRFSSVYDTAECAENWAQKTIAEHARDEREHIYTT 347

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-------DLLVDWRIGEEYF 376
           +  +   T   + +AA  Q+   GWMHN +RM  A  +++        + V   + ++YF
Sbjct: 348 KQLEFAETYDTLWNAAQIQMVRHGWMHNYMRMYWAKKILEWTPDVDTAMKVCVYLNDKYF 407

Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSV----PYF---RIFNPTIQGKRFDPQGTFIRHWL 429
               +DG   +   G  WA     D      P F   R  +     K+FD +  +IR   
Sbjct: 408 ----IDGRDPNGYAGIAWAILGKFDRAWGTRPVFGKRRYMSGASTSKKFDSKA-YIR--- 459

Query: 430 PELNNVP 436
            ++N +P
Sbjct: 460 -QMNALP 465


>gi|118580428|ref|YP_901678.1| deoxyribodipyrimidine photolyase [Pelobacter propionicus DSM 2379]
 gi|118503138|gb|ABK99620.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter propionicus
           DSM 2379]
          Length = 450

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 173/458 (37%), Gaps = 76/458 (16%)

Query: 13  WLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W+  D R  DN AL  A        A ++ +F   P      G + RQ  F+   L +  
Sbjct: 25  WMSRDQRAMDNWALLHAQELALERRAPLVVLFTLAPSFL---GATLRQYGFMLRGLAETA 81

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L++  I F   +     + +  L S+  + RV  +  +     + +R  ++  +    
Sbjct: 82  QLLAKMNIPFYLLR----GEPVGQLCSFVERNRVGTVVTD----FDPLRVKRVWREGAAR 133

Query: 130 RVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                 F+ DS  + P   ++   Q Y  +T          ++  LR L    +    P+
Sbjct: 134 LCGVPFFEVDSHNIVPCRFVSDK-QEYGAHT----------LRPKLRRLLADFLHEFPPL 182

Query: 189 TPSNIPRFFDYPFQAIDPMFPI-----------------GEQNALHILRKFCKEKVYYYV 231
            P   P  +  PFQ +DP   +                 G + A   LR F  + +  Y 
Sbjct: 183 IPH--PHAWPVPFQPLDPQGILSDLYMDRSVSELSNPLPGTRAAGERLRSFIAQGLEDYG 240

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREF 290
            +R+ P   G S+LSP+L  G L+P++      E    L   P S AF  L+ELI  RE 
Sbjct: 241 LRRNDPCCDGQSELSPWLHFGQLAPQRV---ALETVRTLSGSPSSEAF--LDELIVRREL 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLN 344
             +      +    + F  W  K   E   D     +  + ++   T  P+ +AA R L 
Sbjct: 296 SDNFCLHNQAYDRLEGFPAWALKTLGEHRHDRREYLYTQEQFQDAETHDPLWNAAQRSLL 355

Query: 345 TIGWMHNRLRMITASFLV-------KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
             G MH  LRM  A  ++       + L V  R+ + Y     LDG   +   G  W+  
Sbjct: 356 LGGKMHGYLRMYWAKKILEWSASPEEALAVAIRLNDRYS----LDGRDPNGYAGIAWSMG 411

Query: 398 TGNDSV----PYF---RIFNPTIQGKRFDPQGTFIRHW 428
             +D      P F   R  N     ++FD    +IR W
Sbjct: 412 GVHDRAWGERPVFGKIRYMNDRGCRRKFDVD-AYIRRW 448


>gi|116074855|ref|ZP_01472116.1| photolyase protein family [Synechococcus sp. RS9916]
 gi|116068077|gb|EAU73830.1| photolyase protein family [Synechococcus sp. RS9916]
          Length = 495

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 33/205 (16%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCW 260
           D ++PI  Q A   L +F +E+  ++ +  D  +    +     L+P L+IG+L+P Q  
Sbjct: 221 DCLYPIDHQGAQDWLDRFLEERFEHFGDYEDAISRHHRVMWHGVLTPMLNIGLLTPEQVL 280

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
            R  E      I P +    ++ ++I WREF   +   +        F        W  +
Sbjct: 281 RRALEAGESRSI-PLNSLEGFVRQIIGWREFMASMYQRHGRQMRTTNF--------WGFN 331

Query: 320 SHLL-QAWKQGYTGFPIIDAAMRQLNTIGWMHN--RLRMITASFLV------------KD 364
           +  L +A+  G TG P ID A+      GW H+  RL +I    L+             D
Sbjct: 332 NQPLPEAFYTGTTGLPPIDDAIHHALETGWCHHIERLMLIGNVMLLCRFHPDRVYQWFMD 391

Query: 365 LLV---DW-RIGEEYFMSQLLDGDL 385
           L V   DW  +   Y MSQ  DG L
Sbjct: 392 LFVDAYDWVMVPNVYGMSQFADGGL 416


>gi|227505176|ref|ZP_03935225.1| possible deoxyribodipyrimidine photolyase [Corynebacterium striatum
           ATCC 6940]
 gi|227198225|gb|EEI78273.1| possible deoxyribodipyrimidine photolyase [Corynebacterium striatum
           ATCC 6940]
          Length = 178

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 18/187 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+R+DLR+ DN AL  A   S  +VIA  +  P       + +  + +   SL ++  
Sbjct: 4   LYWIRDDLRLHDNPALTWAA--SRGEVIACVLDEPAYPGSRPLGSATAWWRERSLSRLAA 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE---INEVRRDKLLEKRL 127
           +L+   +           D+   L ++    +V+ + +NR+Y    I+   +D LL + L
Sbjct: 62  NLASYNVPLYRLN----GDARSVLPAFAASHKVSAVCWNRRYHLSTIDATAKDTLLAQGL 117

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +      SF    L+ P     HA++ +KVY+ F +A    L      +L VP +   G 
Sbjct: 118 E----AHSFAAHCLVEP-----HAVKPFKVYSAFARAARAVLQDTMQPALGVPDLHGPGA 168

Query: 188 VTPSNIP 194
           +    +P
Sbjct: 169 IAWEELP 175


>gi|262198146|ref|YP_003269355.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365]
 gi|262081493|gb|ACY17462.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365]
          Length = 496

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 21/167 (12%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL--KEEFV 268
           G + A   L +F +  +  Y+E R+ PA   TSQLSPYL  G +S  + + R+  ++++ 
Sbjct: 244 GARAAGETLERFVRAGLPRYLEARNQPADPVTSQLSPYLHFGHISAHEVFRRVMARDQWT 303

Query: 269 DLLIKPKS--------GAFS----WLNELI-WREFYRHLMAFYPSVCMGKPFIPWT---- 311
              + P++        GA S    +L+ELI WRE   ++ A        +    W     
Sbjct: 304 PDRMAPRATGSREGFWGASSEVEGFLDELITWREIGYNMAAKRDDYDRYESLPAWAQTTL 363

Query: 312 EKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           E+   +   HL  L  ++Q  T   + +AA  QL   G +HN +RM+
Sbjct: 364 EEHTGDPRPHLYELDEFEQARTHDALWNAAQTQLVREGRIHNYMRML 410


>gi|21758676|dbj|BAC05354.1| unnamed protein product [Homo sapiens]
          Length = 194

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSW--LDKNDLSLNYPL 458
           +F  + P   G+R DP G +IR +LP L   P +YI+    AP     + K  + +NYP 
Sbjct: 17  FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDLWNAPEGIQKVAKCLIGVNYPK 76

Query: 459 PIVDHKKA 466
           P+V+H +A
Sbjct: 77  PMVNHAEA 84


>gi|167619332|ref|ZP_02387963.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4]
          Length = 170

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +  + +  +VW R+DLR++D+ AL A    S   VI V++   E+     +      +
Sbjct: 1   MSSFDSTAPAVVWFRDDLRVSDHPAL-ARAAESGRPVIGVYV-FDERAGGRALGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        +++NR+Y   +   D
Sbjct: 59  LHGSLRALDAALAGLGGRLVLLRGDEADTFV----SFVAALGAGAVYWNRRYAFAQRAFD 114

Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
             ++  L   RV  ++F+ S+L  P  I+N   + Y+V+  + +A ++
Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALR 162


>gi|167581247|ref|ZP_02374121.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH]
          Length = 168

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +  + +  +VW R+DLR++D+ AL A    S   VI V++   E+     +      +
Sbjct: 1   MSSFDSTAPAVVWFRDDLRVSDHPAL-ARAAESGRPVIGVYV-FDERAGGRALGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        +++NR+Y   +   D
Sbjct: 59  LHGSLRALDAALAGLGGRLVLLRGDEADTFV----SFVAALGAGAVYWNRRYAFAQRALD 114

Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
             ++  L   RV  ++F+ S+L  P  I+N   + Y+V+  + +A ++
Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALR 162


>gi|262277789|ref|ZP_06055582.1| photolyase protein family protein [alpha proteobacterium HIMB114]
 gi|262224892|gb|EEY75351.1| photolyase protein family protein [alpha proteobacterium HIMB114]
          Length = 494

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 20/178 (11%)

Query: 213 QNALHILRKFCKEKVYYY------VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           ++A  +L  F K+K+  +      V+QRD   I   S LSP+++ G ++P++  + L + 
Sbjct: 230 KDAKLVLDNFLKDKLKLFGDYEDAVDQRD--NILFHSALSPFINNGSITPQEILDELTKF 287

Query: 267 FVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
              + I    G   +L ++I WREF R +   +        F        +N  + +  +
Sbjct: 288 EKKVSINSYEG---YLRQVIGWREFMRGIYQNFDDKMQKSNF--------FNHKNKMKNS 336

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           W +G TG   +D A++      W H+  R++  S ++    ++ R   ++FM   +D 
Sbjct: 337 WYEGTTGLDPLDHAIKNAKDYAWSHHIERLMILSNIMNLCEIEPRQVYKWFMEMFMDS 394


>gi|300781309|ref|ZP_07091163.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
           33030]
 gi|300533016|gb|EFK54077.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
           33030]
          Length = 179

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 13/186 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           M + T   + L W R+DLR+TDN AL +AA H     V+ +FI   E      + A  + 
Sbjct: 1   MVSPTPQPLALAWFRDDLRLTDNAALTWAAQHG---HVVGLFIFE-EIDAARPLGAAAAW 56

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           +   S+ ++   L+Q+G+    H      D  E +     +   T + +NR+Y +     
Sbjct: 57  WQRESVRKLHADLAQRGV----HLIIEHGDPREIIPRIAAELGATAVTWNRRYHLLFRDV 112

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D  L++ L       S    +L  P ++   +   ++V+TP+ KA    L+ A     P 
Sbjct: 113 DAELKRTLAQSCEVTSHPGYLLNEPWTVQTGSGTPFRVFTPYGKASQSMLIDAP----PT 168

Query: 180 PAIRLT 185
           P++  T
Sbjct: 169 PSLSPT 174


>gi|168016051|ref|XP_001760563.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688260|gb|EDQ74638.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 137/337 (40%), Gaps = 56/337 (16%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYA 63
             +VW RNDLR+ DN+AL +A  +S   ++ V+   P+ + +           +++F+  
Sbjct: 179 ASIVWFRNDLRVHDNEALVSANRDS-LSILPVYCFDPKDYGKSSSGFDKTGPYRANFLLE 237

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            +  ++ SL ++G        S     ++   S   +     L+ +++    E++ ++ +
Sbjct: 238 CVANLRSSLRERGSDLIVRVGSPEAVLVDLAKSVGAEA----LYVHQEVTYEELQAEEKV 293

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VP 180
              LQ + I  K F  S L     +      M   Y  FR+  +QN+   D    P  + 
Sbjct: 294 AAALQEKGIETKYFWGSTLFHLEDLPFKLQDMPSNYGGFREK-VQNVAIRDTIEAPQQLK 352

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN--------------ALHILRKFCKE- 225
            +   G V P +IP         ++P   + + +              AL  L+KF  E 
Sbjct: 353 GLPACGNVKPGSIPSI---EVLGLNPATNLRKGSVTVGGDGLLGGEEEALQRLQKFALEA 409

Query: 226 -------KVYYYVEQRDIPAIQG---TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-- 273
                  K      +    ++ G   + ++SP+L++G LSPR+ +  LK+          
Sbjct: 410 RSQTSNLKASKSQSESSGDSLYGANFSCKISPWLTMGCLSPRRMFEDLKKSASSASAGAM 469

Query: 274 -----PKSGAFS------WLN-ELIWREFYRHLMAFY 298
                  SGA S      WL  EL+WR+F+R +   Y
Sbjct: 470 SALAVKASGAGSDDNGLNWLVFELLWRDFFRFITKKY 506


>gi|307297559|ref|ZP_07577365.1| DNA photolyase FAD-binding [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916819|gb|EFN47201.1| DNA photolyase FAD-binding [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 449

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 148/364 (40%), Gaps = 43/364 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA--RQSHFIYASLLQV 68
           L W++   R  +N AL  A    +AK + V +A       +  S   R   F++  L  V
Sbjct: 21  LYWMQASQRTEENHALELA--KQEAKELDVPLAVLFVLNANYPSGNLRSFSFMFDGLRDV 78

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L ++GI F   +    D          +  +V+K       ++  +R      KR+ 
Sbjct: 79  KSELEEQGIRFVIFKGDPVD----------IVPKVSKRCALVVTDVGYLRHQIDWRKRIA 128

Query: 129 HRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-------ADLRSLPV 179
            ++ C   S + +V++P  +      + Y   T FRK ++++  +        +LRS   
Sbjct: 129 EKLECPFLSVESNVVVPVRTA--SCKEEYSAAT-FRKKVMKHFAEFVNDFEAVELRSRAS 185

Query: 180 PAIRLTGPVTPSNIP-RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            A    G     ++     D     +   F  G++ A   L  F  + +  + E+R+ P 
Sbjct: 186 LA-EFEGATGIEDVDLSDLDQSVSVVSD-FHGGQKEAKRRLEVFLSKNLDRFEEERNDPN 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S++SP+L  G +SP     R+    +D   K K+   +++ EL+ R        FY
Sbjct: 244 SGCLSEMSPFLHFGHISPSYIARRV----IDSCSKGKN---AYIEELVVRRELGVNFVFY 296

Query: 299 PSVCMGKPFIP-WTEKI--EWNKDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            S       +P W +K   E  KD  +    L   + G T  P  +AA ++++  G MH 
Sbjct: 297 NSKYDSFEALPQWAQKTLNEHRKDKRVRSFSLSELESGKTDDPYWNAAQKEMSLTGKMHG 356

Query: 352 RLRM 355
            +RM
Sbjct: 357 YMRM 360


>gi|120603889|ref|YP_968289.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris DP4]
 gi|120564118|gb|ABM29862.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio vulgaris
           DP4]
          Length = 473

 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 144/386 (37%), Gaps = 59/386 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  + R  DN AL  A   + A    + +      R    + RQ HF+   +    +
Sbjct: 24  LYWMHREHRAHDNWALLHAIGEAKAAGAPLAVVWCLSPRFLDAAYRQFHFLLRGMRGTAE 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK---LFYNRQY--EINEVRRDKLLEK 125
           +L + GI F   Q    D+   +  ++     VT    L   R +  +++E     L E 
Sbjct: 84  TLREHGIPFFLLQGDPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVHEALACPLHEV 143

Query: 126 RLQHRVICKSFDD------------------SVLLPPGSILNHALQMYKVYTPFRKALIQ 167
             ++ V C+   D                    L P  S+   A  +     P   A+  
Sbjct: 144 DGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDPFPSLATEASGVAAWKAPVPDAMAA 203

Query: 168 NLVQADLRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
               A L + P    VPA  LTGP  P  +P                GE+ A   L  F 
Sbjct: 204 PDWDALLAAHPADRSVPA--LTGPDAP--VP----------------GEEGARRTLETFL 243

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             +++ Y E+R+ P     S LSPYL  G+++ ++   R+                S++ 
Sbjct: 244 TSRIHRY-EKRNDPNADAVSGLSPYLHFGMMAAQRVVQRVTASTA----GSADARASFIE 298

Query: 284 EL-IWREFYRHLMAFYPSVCMGKPFIPWTE-KIEWNKDS---HLLQ--AWKQGYTGFPII 336
           EL + RE   +     P       F  W +  ++ ++D    HL    A ++  T  P+ 
Sbjct: 299 ELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKARTADPLW 358

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLV 362
           +AA  QL   G +H  +RM  A  L+
Sbjct: 359 NAAQTQLMRCGVIHGYMRMYWAKQLL 384


>gi|167919770|ref|ZP_02506861.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BCC215]
          Length = 176

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 86/174 (49%), Gaps = 9/174 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSH 59
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       R  G +AR   
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARW-- 57

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           +++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     
Sbjct: 58  WLHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAV 113

Query: 120 DKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
           D  ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A
Sbjct: 114 DNAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPA 167


>gi|258541537|ref|YP_003186970.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632615|dbj|BAH98590.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635672|dbj|BAI01641.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638727|dbj|BAI04689.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641781|dbj|BAI07736.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644836|dbj|BAI10784.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647891|dbj|BAI13832.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650944|dbj|BAI16878.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653935|dbj|BAI19862.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-12]
          Length = 211

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LV LR+D R+ DN AL+AAC      V+  ++   +   Q     R + +  A+  Q+  
Sbjct: 11  LVLLRDDYRVADNPALHAACATGQ-PVLCAYVQ--DAALQDASGTRIADWAQAACAQLAT 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV--TKLFYNRQYEINEVRRDKLLEKRLQ 128
           SL ++G      Q          L    L Q V  T +F+NR+Y+   +  D  +   L+
Sbjct: 68  SLHEQG------QTLFMLSGPTRLSVPALAQAVHATDVFWNRRYDAPGIAADTDVHASLK 121

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164
            + V   S    +L  P +I   A Q Y+V+T + +A
Sbjct: 122 KQGVTVHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRA 158


>gi|225425190|ref|XP_002264876.1| PREDICTED: similar to predicted protein [Vitis vinifera]
          Length = 467

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           Q   +DP+G ++RHWLPEL  VPT++IH P
Sbjct: 104 QSSNYDPEGEYVRHWLPELARVPTEWIHHP 133


>gi|167816640|ref|ZP_02448320.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 91]
          Length = 168

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 86/174 (49%), Gaps = 9/174 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSH 59
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       R  G +AR   
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARW-- 57

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           +++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     
Sbjct: 58  WLHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAV 113

Query: 120 DKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
           D  ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A
Sbjct: 114 DNAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPA 167


>gi|317151798|ref|YP_004119846.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942049|gb|ADU61100.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2]
          Length = 450

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 14/169 (8%)

Query: 203 AIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
           A+ P+  + GE  A   L +F  ++++ Y  QR+ P   GTS+LS Y   G L+P+    
Sbjct: 211 AVGPVSLVPGEDAAHDALDRFVADRLHVYAGQRNDPNADGTSRLSAYFHFGQLAPQ---- 266

Query: 262 RLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYP--SVCMGKPFIPWTEKIEWNK 318
             +            G  ++L EL + RE   +     P      G P        E   
Sbjct: 267 --RAALAAAASGRGEGQAAYLEELVVRRELADNFCLHNPQYDSLAGAPAWALKTLGEHRA 324

Query: 319 D----SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           D     +  + ++Q  TG  + +AA  +L   G+MH  +RM  A  +++
Sbjct: 325 DPRAHCYTRETFEQARTGSRLWNAAQNELRQTGFMHGYMRMFWAKKILE 373


>gi|116625724|ref|YP_827880.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228886|gb|ABJ87595.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 456

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 97/246 (39%), Gaps = 31/246 (12%)

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR------- 183
           V  ++ D S ++P G+I   +   Y +     +  I  L+   L++ P   IR       
Sbjct: 128 VRLEAVDGSCIVPVGAIPGRSYAAYSI-----RPRIHRLLPKYLKAAPALEIRRRSRERF 182

Query: 184 --LTGPVTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             L   V+  NI         D+  +A    FP G   A   L++F +E++  Y   ++ 
Sbjct: 183 EDLHTEVSAPNIASLVAECEIDHGVRA-STTFPGGRMAAEAGLQRFLEERLRRYARDKNE 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P++  TS+LSPYL  G +   +    ++E         K  A  +L ELI R    H  A
Sbjct: 242 PSLHATSELSPYLHYGHIGALEVALAVREHAA----AHKLIADEFLEELIVRRELAHNFA 297

Query: 297 FYPSVCMGKPFIP-WTEKI--EWNKDSHLLQAWKQGYTGFPIID----AAMRQLNTIGWM 349
            Y         +P W  K   +  +D+      +  + G    D    A  ++L   G +
Sbjct: 298 RYAPRLDSLDVLPDWARKTIEDHRRDTRDPVYGRAEFEGAATHDDLWNATQKELVLRGKI 357

Query: 350 HNRLRM 355
           H   RM
Sbjct: 358 HGYYRM 363


>gi|167629931|ref|YP_001680430.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum
           Ice1]
 gi|167592671|gb|ABZ84419.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum
           Ice1]
          Length = 498

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 90/436 (20%), Positives = 157/436 (36%), Gaps = 65/436 (14%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++   + V +         G +AR   F+   L  V++
Sbjct: 22  LYWMQASQRAEYNHALEYAIGEANKLGLPVLVFFGLTGGVPGANARHYRFLLEGLCDVRE 81

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L ++GI     +    +  +       L +R   +  +R Y    +R  +   +    R
Sbjct: 82  ALQRRGIAMIIRRIPPVEGVV------ALARRAALVVTDRGY----LRYQRQWREAAAAR 131

Query: 131 VICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIRLTGP 187
           + C     +  V++P  +           + P  K L+   LV  + R    PA  +   
Sbjct: 132 IDCPFIQVESDVIVPVETASPKEEYGAATFRPKIKRLLDTFLVPLEERDTDCPAPDVEAL 191

Query: 188 VTPS--NIPRFFD--YPFQAIDPMFPI------------GEQNALHILRKFCKEKVYYYV 231
           +  +    P F D   P  +I     +            G + A   L  F  +K++ Y 
Sbjct: 192 LDEALPGEPVFADSATPLSSIVTALSVDASISPARGWRGGSKEAHRRLDDFLGKKLFRYH 251

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF--------------------VDLL 271
           E +  P++ G S+LSP+L  G +SP +   + ++                      V + 
Sbjct: 252 EDKKDPSLDGLSELSPFLHFGQISPLEVALKARQAVATDLSLDGTGLSLDGTGPSPVGVG 311

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
             P  G  ++L ELI R       A+Y P+         W +       SH L + +  Y
Sbjct: 312 PSPNPGLAAFLEELIVRRELAMNFAYYNPAYDQFAALPAWAQA---TLHSHRLDSREFNY 368

Query: 331 TGFPII---------DAAMRQLNTIGWMHNRLRMITASFLVK---DLLVDWRIGEEYFMS 378
           T   +          +AA  +L   G MH  +RM     +++   D    +RI  E   +
Sbjct: 369 TKAELENACTHDRYWNAAQTELVLRGKMHGYMRMYWGKKILEWTADPERAYRIAVELNDT 428

Query: 379 QLLDGDLASNNGGWQW 394
             LDG   +   G  W
Sbjct: 429 YALDGRDPNGYTGIAW 444


>gi|262195259|ref|YP_003266468.1| deoxyribodipyrimidine photolyase-related protein [Haliangium
           ochraceum DSM 14365]
 gi|262078606|gb|ACY14575.1| deoxyribodipyrimidine photolyase-related protein [Haliangium
           ochraceum DSM 14365]
          Length = 519

 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 16/196 (8%)

Query: 195 RFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPY 248
           RF D+P +  +     P   + AL  LR F  E++  +    D  + +G     S LSP 
Sbjct: 220 RFADHPGELSEAGWWLPSTRRQALAWLRGFLDERLERFGAYEDALSTRGPVLFHSVLSPL 279

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPF 307
           L++G+++P +   R      D  + P +    +L ++I WREF R        V  G   
Sbjct: 280 LNLGLITPDEVVERTLAHAEDHRV-PLNSLEGFLRQIIGWREFVR-------GVYRGHSE 331

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
              T    W     +   W    TG   +D A+ ++  +GW H+  R++    L+    +
Sbjct: 332 QQETANA-WGHHRRMKPCWWDASTGLRPLDDAIAKVLRMGWAHHIERLMVLCNLMNLCEI 390

Query: 368 DWRIGEEYFMSQLLDG 383
           + R   ++F++  +D 
Sbjct: 391 EPRQVHDWFLAMFVDA 406


>gi|78355226|ref|YP_386675.1| deoxyribodipyrimidine photo-lyase type II [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217631|gb|ABB36980.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 487

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 8/164 (4%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEE 266
            P GE  AL  L  F + +++ Y  +R+ P +   S LSPYL  G+LS  R     ++ +
Sbjct: 223 LPPGENAALAELTAFIRVRMHRYAAERNNPLMPVLSHLSPYLHFGMLSAQRAVLEVMQAQ 282

Query: 267 FVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSH 321
                     GA +++ EL + RE   +   + PS    + F  W  K       ++  +
Sbjct: 283 GTAAGGTYGEGAAAFVEELVVRRELADNFCWYEPSYDSVEAFPDWALKTLDRHRADRRPY 342

Query: 322 LL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           L   Q  ++  T  P+ +AA +++   G MH  +RM  A  +++
Sbjct: 343 LYDEQQLEKARTHDPLWNAAQQEMVLTGKMHGYMRMYWAKKILE 386


>gi|145219390|ref|YP_001130099.1| deoxyribodipyrimidine photo-lyase type II [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205554|gb|ABP36597.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
           phaeovibrioides DSM 265]
          Length = 452

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 114/291 (39%), Gaps = 31/291 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+  N+AL  +   + A    + +         G + RQ HF+   L +++ 
Sbjct: 21  IYWMSRDQRVQHNRALLFSQMKAKALGQPLRVVFTLASSFIGATYRQYHFMLEGLREIEL 80

Query: 71  SLSQKGIVFQYHQCS-NFDDSIEWLDSY-------CLQQRVTKLFYNRQYEINEVRRDKL 122
            L +  I F   QCS       + L+ Y       C+    + L  +RQ++       K 
Sbjct: 81  LLGELNIGFVLLQCSPQSGGPGKELEGYAGSSGAGCVVTDYSPLRISRQWKQQAAASLK- 139

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
                   V     D   ++P  +         + + P    L+   +Q  L++  V A+
Sbjct: 140 --------VPLYEVDAHNIVPCHAASGKQEYAARTFRPKINRLLGEFLQP-LQA--VEAM 188

Query: 183 RLTGPVTPSNIPRFF-----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                +   N    F     D   + ID + P GE+ A   LR+F  EK+  Y E R+ P
Sbjct: 189 PHRAELQKVNWREVFANLSVDRTVEPIDWLKP-GERAASEHLRRFISEKLPRYSELRNDP 247

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
             +GTS LS YL  G LS  Q    ++         P+    ++L ELI R
Sbjct: 248 TAEGTSLLSAYLHFGQLSAAQVALEVQSSGA-----PEESKAAFLEELIVR 293


>gi|149175245|ref|ZP_01853867.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797]
 gi|148845854|gb|EDL60195.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797]
          Length = 497

 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 111/280 (39%), Gaps = 68/280 (24%)

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFR----KALIQNLVQADLRSLPVPAIRLTG 186
           V  ++ D + LLP    L  A Q+Y     FR    KAL  +L Q        P I    
Sbjct: 140 VRLEAIDSNGLLP----LRAASQIYPTAYAFRRFLHKALPDHLDQ-------TPKI---N 185

Query: 187 PVTPSNIPRFFDYPFQAID--PM--------------------------FPIGEQNALHI 218
           P++  ++P F   P + ++  PM                          F  G + A   
Sbjct: 186 PLSHIDLPEFSSLPAKILERWPMASDQLLQATPEVLADLPLDHQVGPADFDGGMKAASKT 245

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-------EFVDLL 271
           L++F   +   Y E+R++P  + TS LSPYL  G +S  + + R+ +       + +D  
Sbjct: 246 LKQFLNVRFERYAEERNLPEEEVTSGLSPYLHFGHISVHEVFKRVADREDWNAAKVIDQK 305

Query: 272 IKPKSG--------AFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWT-----EKIEWN 317
              K          A  +L+ELI WRE   ++          +    W      E     
Sbjct: 306 ATGKRAGWWQMSETAEGFLDELITWRELGYNMCWQRDDYDQYESLPDWARTTLEEHAADK 365

Query: 318 KD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +D  + L+ ++Q  T   + +AA  QL T G MHN +RM+
Sbjct: 366 RDPCYTLEEFEQARTHDELWNAAQTQLVTEGRMHNYMRML 405


>gi|21226954|ref|NP_632876.1| deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1]
 gi|20905266|gb|AAM30548.1| Deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1]
          Length = 464

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 12/155 (7%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           F  GE+ A  ++  F  +++  Y   R+ P     S LSPYL  G +S +    R+  E 
Sbjct: 230 FEPGEKAAKKVMESFIADRLDSYGALRNDPTKNMLSNLSPYLHFGQISSQ----RVVLEV 285

Query: 268 VDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWT-EKIEWNKD---SHL 322
                 P S   ++L+E LIW+E   +   + P     + F  W  E +  +++   SH+
Sbjct: 286 EKAESNPGSKK-AFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHI 344

Query: 323 --LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             L+ ++ G T  P+ +A+  +L + G MH  +RM
Sbjct: 345 YTLEEFEAGKTHDPLWNASQMELLSTGKMHGYMRM 379


>gi|224371018|ref|YP_002605182.1| DNA deoxyribo-dipyrimidine photolyase family protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223693735|gb|ACN17018.1| DNA deoxyribo-dipyrimidine photolyase family protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 453

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 143/380 (37%), Gaps = 68/380 (17%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W++   R  +N AL  A + +   D  V+ VF  T +       + R   F+   L +
Sbjct: 22  LYWMQQAQRAEENHALEYAIYQANQQDKMVVVVFSLTNDS---PDANLRHYTFMLEGLNE 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            +KSL ++GI   +       + ++      + ++ + +  +R Y    +R  +   K +
Sbjct: 79  TRKSLEKRGIRMIFRIGHPVKEVLD------IGRKASMIVCDRGY----LRHQRAWRKAI 128

Query: 128 QHRVICK--SFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             +  C     +  V++P   + + A    Y +     + L Q L   +   L  P++ +
Sbjct: 129 AEKSGCPVVQVETDVVIPVEQVSDKAEYAAYTIRPKISRQLDQYLTPIEHIELRNPSLEI 188

Query: 185 TGPVTPSNIPRF--------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              +  + + R          D   Q +  +F  G   A      F  +    Y   R+ 
Sbjct: 189 A--LKSTELERIKTVLKDLNVDDSIQPVSHIFRGGTSEAKARFDVFLDQHFSRYAVHRNE 246

Query: 237 PAIQGTSQLSPYLSIGVLSP-------RQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WR 288
           P     S +SPYL  G +SP       + C N  +E            A ++L ELI  R
Sbjct: 247 PKYLAVSCMSPYLHFGQISPLYLALKIKACKNEAQE-----------AAAAYLEELIVRR 295

Query: 289 EFYRHLMAFYPSV----CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII-------- 336
           E   + + F P      C+  P  P     E  KD          YT   +I        
Sbjct: 296 ELAANFVYFNPYYDSLGCL--PAWPTKTLAEHEKDVR-----DPVYTKSQLIACRTHDEY 348

Query: 337 -DAAMRQLNTIGWMHNRLRM 355
            +AAM+++   G+MHN +RM
Sbjct: 349 WNAAMKEMIVTGFMHNYMRM 368


>gi|18874061|dbj|BAB85485.1| cryptochrome [Sarcophaga bullata]
          Length = 81

 Score = 47.0 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA----PHSWLDKND--LSLNYPLPIVDHK 464
           P    KR DP G +I+ ++PEL NVP +YIH     P +  + +D  + ++YP  ++D  
Sbjct: 8   PIALAKRLDPMGQYIKQYVPELANVPKEYIHEPWRMPMNIQEDSDCVIGIHYPERLIDLN 67

Query: 465 KAC 467
            AC
Sbjct: 68  VAC 70


>gi|27262422|gb|AAN87492.1| Deoxyribodipyrimidine photolyase [Heliobacillus mobilis]
          Length = 257

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 13/152 (8%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G   A  +L +F   K+ +Y E+R+ P+++  S LSPYL  G +SP     R++E  +  
Sbjct: 28  GASAAKGLLDRFIATKLEHYGERRNDPSLEYVSSLSPYLHFGQISPLYMALRVQESNI-- 85

Query: 271 LIKPKSGAFSWLNELIWRE-----FYRHLMAF--YPSVCMGKPFIPWTEKIEWNKDSHLL 323
               ++   ++L ELI R      F  + + +  + ++        +T +++  + ++ L
Sbjct: 86  ----RASVDAYLEELIVRRELSINFVHYNLRYDEFTALPEWARQTLYTHRVDCREFNYGL 141

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              + G T  P  +AA  +L   G +H  +RM
Sbjct: 142 SELENGLTDDPFFNAAQTELRKRGIIHGYMRM 173


>gi|46578529|ref|YP_009337.1| deoxyribodipyrimidine photolyase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46447940|gb|AAS94596.1| deoxyribodipyrimidine photolyase, putative [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 474

 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 142/386 (36%), Gaps = 59/386 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  + R  DN AL  A   + A    + +      R    + RQ HF+   +    +
Sbjct: 20  LYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPRFLDAAYRQFHFLLRGMRGTAE 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK---LFYNRQY--EINEVRRDKLLEK 125
           +L + GI F   Q    D+   +  ++     VT    L   R +  ++ E     L E 
Sbjct: 80  TLREHGIPFFLLQGDPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVREALACPLHEV 139

Query: 126 RLQHRVICKSFDD------------------SVLLPPGSILNHALQMYKVYTPFRKALIQ 167
             ++ V C+   D                    L P  S+   A  +     P   A+  
Sbjct: 140 DGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDPFPSLATEASGVAAWKAPVPDAMAA 199

Query: 168 NLVQADLRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
               A L + P    VPA  LTGP  P  +P                GE+ A   L  F 
Sbjct: 200 PDWDALLAAHPADRSVPA--LTGPDAP--VP----------------GEEGARRTLETFL 239

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             +++ Y E+R+ P     S LSPYL  G+++ ++   R+                S++ 
Sbjct: 240 TSRIHRY-EKRNDPNADAVSGLSPYLHFGMMAAQRVVQRVTASTA----GSADARASFIE 294

Query: 284 EL-IWREFYRHLMAFYPSVCMGKPFIPWTE-KIEWNKDS---HLLQ--AWKQGYTGFPII 336
           EL + RE   +     P       F  W +  ++ ++D    HL    A ++  T  P+ 
Sbjct: 295 ELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKARTADPLW 354

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLV 362
           +A   QL   G +H  +RM  A  L+
Sbjct: 355 NAGQTQLMRCGVIHGYMRMYWAKQLL 380


>gi|311232455|gb|ADP85309.1| DNA photolyase FAD-binding protein [Desulfovibrio vulgaris RCH1]
          Length = 478

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 142/386 (36%), Gaps = 59/386 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  + R  DN AL  A   + A    + +      R    + RQ HF+   +    +
Sbjct: 24  LYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPRFLDAAYRQFHFLLRGMRGTAE 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK---LFYNRQY--EINEVRRDKLLEK 125
           +L + GI F   Q    D+   +  ++     VT    L   R +  ++ E     L E 
Sbjct: 84  TLREHGIPFFLLQGDPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVREALACPLHEV 143

Query: 126 RLQHRVICKSFDD------------------SVLLPPGSILNHALQMYKVYTPFRKALIQ 167
             ++ V C+   D                    L P  S+   A  +     P   A+  
Sbjct: 144 DGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDPFPSLATEASGVAAWKAPVPDAMAA 203

Query: 168 NLVQADLRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
               A L + P    VPA  LTGP  P  +P                GE+ A   L  F 
Sbjct: 204 PDWDALLAAHPADRSVPA--LTGPDAP--VP----------------GEEGARRTLETFL 243

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             +++ Y E+R+ P     S LSPYL  G+++ ++   R+                S++ 
Sbjct: 244 TSRIHRY-EKRNDPNADAVSGLSPYLHFGMMAAQRVVQRVTASTA----GSADARASFIE 298

Query: 284 EL-IWREFYRHLMAFYPSVCMGKPFIPWTE-KIEWNKDS---HLLQ--AWKQGYTGFPII 336
           EL + RE   +     P       F  W +  ++ ++D    HL    A ++  T  P+ 
Sbjct: 299 ELVVRRELADNFCLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAALEKARTADPLW 358

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLV 362
           +A   QL   G +H  +RM  A  L+
Sbjct: 359 NAGQTQLMRCGVIHGYMRMYWAKQLL 384


>gi|91762569|ref|ZP_01264534.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91718371|gb|EAS85021.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 445

 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 18/194 (9%)

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY------VEQRDIPAIQGTSQLSPYL 249
           F D+P    D        + + +L  F KEK   +      V Q+D   I   S LSPY+
Sbjct: 162 FKDHPGSTNDFWLATEYADVVELLDFFIKEKSNLFGDYEDAVNQKD--NILFHSALSPYI 219

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFI 308
           ++G+++P     ++ E      I+  S    ++ ++I WREF R +   Y      K F 
Sbjct: 220 NLGLITPEIIIQKILEFHKKHKIRMNSLE-GYIRQIIGWREFMRGIYQGYSHEMETKNFF 278

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
               K++        ++W +G TG   +D A++     GW H+  R++  S ++    V 
Sbjct: 279 KHNRKMK--------KSWYEGTTGLLPLDYAIKNAVNHGWSHHIERLMILSNIMNLCEVK 330

Query: 369 WRIGEEYFMSQLLD 382
                ++FM   +D
Sbjct: 331 PTTVYKWFMEMFVD 344


>gi|167903518|ref|ZP_02490723.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei NCTC
           13177]
          Length = 224

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 84/173 (48%), Gaps = 7/173 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 49  LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFD-ERAGGRPLGGAARWW 106

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     D
Sbjct: 107 LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 162

Query: 121 KLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A
Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPA 215


>gi|311029788|ref|ZP_07707878.1| deoxyribodipyrimidine photolyase [Bacillus sp. m3-13]
          Length = 221

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 40/240 (16%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQS---HF 60
           M++ ++W R D R+ DN ALY A   +  +   ++ V+   P      G +   +    F
Sbjct: 1   MTLSIMWFRRDFRLQDNAALYHAVKETQHRNEPLLLVYHLDP------GFTTNDTPNHRF 54

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY--CLQQ--RVTKLFYNRQYEINE 116
            +A+L +  K   ++GI     + +       W +++   L+    VT L+YN+      
Sbjct: 55  FFAALDRFIKRCEKQGIYIHLVEGT-------WQEAFNQILEHFPEVTSLYYNQDEVGAG 107

Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQN------ 168
            +RDK ++K    R I   S+ D  +     +      +YKV+TP F+K + Q       
Sbjct: 108 QKRDKEVDKFFIKRGIRVSSYIDYTIHGANEVKKPDNSIYKVFTPYFKKWMAQPKRDPYI 167

Query: 169 LVQADL--RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
           L + DL   ++   A+   G    SN+ +  D   Q I P     E+ AL +L  F K+K
Sbjct: 168 LTKEDLTIENIKNDALYSKGQKVLSNLIKVSD---QDIIPH----EEAALEVLNLFLKKK 220


>gi|297623532|ref|YP_003704966.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
           17093]
 gi|297164712|gb|ADI14423.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
           17093]
          Length = 489

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 21/159 (13%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           F  G +    +LR F +E+   Y   R+ P     S +S YL  G +SP          F
Sbjct: 253 FRGGTREGERVLRAFLRERFGDYAATRNQPQTNNVSHMSKYLHFGQISP---------VF 303

Query: 268 VDLLIKPKSGAFS----WLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS 320
           V L ++ ++GA      +L ELI  RE   + + + P          W  K   E   D+
Sbjct: 304 VALEVQ-RAGAGKNAEVYLEELIVRRELPMNFVFYEPHYDRYDALPAWARKTLDEHRGDA 362

Query: 321 --HLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             HL   +  +   T  P  +AAM+++   G+MHN +RM
Sbjct: 363 REHLYTREQLEAAETHDPYWNAAMKEMLHTGYMHNYMRM 401


>gi|294495094|ref|YP_003541587.1| deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii
           DSM 5219]
 gi|292666093|gb|ADE35942.1| Deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii
           DSM 5219]
          Length = 457

 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           P +  G   A   L  F   ++  Y E+R+ P +   S +SPYL  G +SP +   ++++
Sbjct: 214 PRYKGGIHQAREKLSDFIAHRLGDYDEKRNDPNLDFLSGMSPYLHFGQISPLEIALKVQD 273

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP-WTEKI------EWNK 318
                    K G+ +++ EL+ R        +Y         +P W +K       ++ +
Sbjct: 274 -------AKKGGSTAYMEELVVRRELAMNFVYYDKDYDSLDCLPDWAKKTLAEHRDDFRQ 326

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +  + ++Q  T  P  +AA R++   G MH  +RM
Sbjct: 327 YIYTQEEFEQARTHDPYWNAAQREMVLTGKMHGYMRM 363


>gi|115379247|ref|ZP_01466362.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
 gi|310819481|ref|YP_003951839.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
 gi|115363746|gb|EAU62866.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
 gi|309392553|gb|ADO70012.1| Deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
          Length = 469

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 80/201 (39%), Gaps = 25/201 (12%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           F  G   A  +LR F    +  Y E R  P     S +S YL  G +SP           
Sbjct: 222 FRGGTSEAKRVLRGFVTRHLPEYQENRPHPETDHVSHMSKYLHFGQISPVVV---ALAAR 278

Query: 268 VDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI-----EWNKDSH 321
               ++P+   F  L ELI  RE  ++   + P          W  K         +  H
Sbjct: 279 EARALRPQRDTF--LEELIVRRELAQNFAEYTPQYDDYTSLPAWARKTLAAHAGDKRPFH 336

Query: 322 LLQA-WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
             +A  +Q  T  P  +AAMR++   G+MHN +RM    +  K +L   R  EE + + L
Sbjct: 337 YTKAQLEQARTHDPYWNAAMREMRYTGYMHNAMRM----YWGKKILEWGRTPEEAYRTAL 392

Query: 381 -------LDGDLASN--NGGW 392
                  LDG  A++  N GW
Sbjct: 393 TLNNTYFLDGRDANSFTNIGW 413


>gi|254456383|ref|ZP_05069812.1| photolyase protein family protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083385|gb|EDZ60811.1| photolyase protein family protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 469

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 24/197 (12%)

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY------VEQRDIPAIQGTSQLSPYL 249
           F D+P    +        + + +L  F KEK   +      V Q+D   I   S LSPY+
Sbjct: 186 FKDHPGSTDNFWLATEYDDVVKLLNFFIKEKSNLFGDYEDAVNQKD--NILFHSALSPYI 243

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPK---SGAFSWLNELI-WREFYRHLMAFYPSVCMGK 305
           ++G+++P     ++    +D   K K   +    ++ ++I WREF R +   Y       
Sbjct: 244 NLGLITPELIIQKI----LDFHKKNKIRMNSLEGYIRQVIGWREFMRGIYQGYSEKMETG 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F     K++         +W  G TG P +D A++     GW H+  R++  S ++   
Sbjct: 300 NFFKQNRKMK--------NSWYVGTTGLPPLDYAIKNAVNHGWSHHIERLMILSNIMNLC 351

Query: 366 LVDWRIGEEYFMSQLLD 382
            +   I  ++FM   +D
Sbjct: 352 EIKPTIVYKWFMEMFVD 368


>gi|289740223|gb|ADD18859.1| photolyase [Glossina morsitans morsitans]
          Length = 510

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G +NA H L +FC+ ++  + ++R+ P I   S LSP+ + G +S ++C   +K    + 
Sbjct: 273 GYKNACHQLLEFCQNRLKLFHDKRNDPNIDALSGLSPWFNFGQISIQRCILEIKT--YEH 330

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQ 324
             K    AF     ++ RE   +   +  +    +    W+ K   E  KD     + L+
Sbjct: 331 KFKDSVAAFC-EEAIVRRELADNFCFYNQNYDNFQGLQDWSRKTLNEHRKDERSPCYSLE 389

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            ++Q  T   + ++A  QL   G MH  LRM  A  +++
Sbjct: 390 EFEQARTHDDLWNSAQLQLMREGKMHGFLRMYWAKKILE 428


>gi|167009786|ref|ZP_02274717.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 133

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 88  DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGS 146
           D+ +E +     +  +T  ++NR Y+   + RD  +++ LQ H++   SF+ S+L+ P  
Sbjct: 17  DNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQFLQQHKINVNSFNGSLLIEPWQ 76

Query: 147 ILNHALQMYKVYTPFRKALIQ 167
                   YKVYTPF K LI+
Sbjct: 77  CKKDDGTHYKVYTPFYKELIK 97


>gi|302850180|ref|XP_002956618.1| photolyase [Volvox carteri f. nagariensis]
 gi|300258145|gb|EFJ42385.1| photolyase [Volvox carteri f. nagariensis]
          Length = 667

 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 19/147 (12%)

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSW 281
           C  +VY  V+   +    GTS++SPYL  G++SP +   R   E   +      SGA  +
Sbjct: 444 CPIRVYANVQMWSV-QRSGTSRMSPYLHWGMVSPFRSAERGGYEIAREAAASGGSGAGKF 502

Query: 282 LNEL-IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-----------HLLQAWKQG 329
           L+EL +WRE       +  S       +P      W +D+             LQ  + G
Sbjct: 503 LDELLVWRELSYSFCFYRYSQLQSLSVLP-----RWAQDTLAAHATDPRVVKTLQQLELG 557

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            TG P  DAA  QL++ G +HN +RM 
Sbjct: 558 ATGDPFWDAAQCQLSSYGELHNNVRMT 584


>gi|220931344|ref|YP_002508252.1| Deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168]
 gi|219992654|gb|ACL69257.1| Deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168]
          Length = 466

 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 143/379 (37%), Gaps = 60/379 (15%)

Query: 11  LVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIAT----PEQWRQHGISARQSHFIYAS 64
           L W++   R   N AL  A    N   K + V+       PE  R+H        F+   
Sbjct: 23  LYWMQASQRTEYNHALEYAIIEANKSNKPLLVYFGIDTSFPEANRRH------YQFMLEG 76

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +V+KSL  +GI           D +++ +   L      L  +R Y    ++ ++   
Sbjct: 77  LQEVKKSLYNRGIKMIIESVPPDKDILKFAEYASL------LVVDRGY----LKIERTWR 126

Query: 125 KRLQHRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
             +  ++ C     + +V++P    +  + + Y  YT  RK L + L +  L  L    I
Sbjct: 127 NNVSQQIDCPLIQVESNVIVPVE--VASSKEEYAAYT-IRKKLYRKLPEF-LHPLHTRTI 182

Query: 183 RLTGPVTPSNIPRFFDYPFQ---------AIDPMFPI------GEQNALHILRKFCKEKV 227
           R++      +   + D P            +D   P       G   AL +   F   K+
Sbjct: 183 RVSSLDLKLSFINYKDIPLDNVTLCLDRLKVDNTVPEVNLYRGGTTRALALYNDFLHNKI 242

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLN 283
             Y E R+ P     S +SPYL  G +SP        N  K+  +D       G   +  
Sbjct: 243 KDYHEYRNDPVKNWISNMSPYLHFGQVSPLHLIIKGNNYCKKHEID------KGFKEFFE 296

Query: 284 EL-IWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKD----SHLLQAWKQGYTGFPII 336
           EL I RE   + + + P     K    W +K   E   D    S+ LQ  +   T  P  
Sbjct: 297 ELVIRRELSFNFVYYNPDYDSIKSLPDWAKKTLKEHENDTREFSYSLQELEDAKTHDPYW 356

Query: 337 DAAMRQLNTIGWMHNRLRM 355
           +AA ++L   G +H  +RM
Sbjct: 357 NAAQKELLLTGKIHGYMRM 375


>gi|195657177|gb|ACG48056.1| hypothetical protein [Zea mays]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 16/107 (14%)

Query: 211 GEQNALHILRKFCKE------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           GE  AL  L+KF  E      KV     Q  I     + ++SP+L+ G LSPR  +  LK
Sbjct: 84  GETEALERLKKFAAECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELK 143

Query: 265 EEFVDLL---IKPKS------GAFSWLN-ELIWREFYRHLMAFYPSV 301
           +     +     PK+         +WL  EL+WR+F+R +   Y SV
Sbjct: 144 KHATKAIPFGSTPKNNDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 190


>gi|327342154|gb|AEA50864.1| cry2-2 [Populus tremula]
          Length = 177

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 17/159 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL  
Sbjct: 4   SKTIVWFRRDLRIEDNPALAAAAR--DGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61

Query: 68  VQKSLSQKG----IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122
           + +SL   G    ++  +       D IE + +       T++ +N  Y+ ++ VR   +
Sbjct: 62  LGQSLKSLGAELVLIKTHSTVVALLDCIETIGA-------TRVVFNHLYDPVSLVRDHNI 114

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILN---HALQMYKVY 158
            EK ++  +  +S++  +L  P  I +   +A   ++ Y
Sbjct: 115 KEKLVELGISVQSYNGDLLYEPWEIYDERGYAFTTFEAY 153


>gi|294102825|ref|YP_003554683.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM
           12261]
 gi|293617805|gb|ADE57959.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM
           12261]
          Length = 456

 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 170/435 (39%), Gaps = 67/435 (15%)

Query: 13  WLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISA--RQSHFIYASLLQ 67
           W+  D R+ DN AL  A   +      ++ VF  TP     H +SA  R  HF+   L +
Sbjct: 21  WMNRDQRVEDNWALLEAQKYALLNKKPLLVVFCLTP-----HFLSASYRAYHFMLHGLHE 75

Query: 68  VQKSLSQKGIVF---QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD---K 121
           V++ L    I F   +     +  + I+ +D   L    + L   +++ + ++++D    
Sbjct: 76  VRQGLLGLNIPFILLEQEAPLSLPNLIKKIDVSALFTDFSPLRIKKEW-VEQIKKDIAIP 134

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             E    + V C            +     L+    +     +LI++     L      A
Sbjct: 135 FYEIDAHNIVPCWEASTKKEYSARTFRPRILKKVPDFLTPIPSLIRHPYNETL------A 188

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           ++   P+    +   + YP Q   P++    G    +  L+KF K+K+  Y E R+ P  
Sbjct: 189 LKTAAPL---EMLTKYHYP-QKTLPLYGGKAGYTAGMECLQKFIKKKLRVYKELRNDPTN 244

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--------KSGAFSWLNELIWREFY 291
              SQLSP+L  G ++P++         V ++IK         +    S+L ELI R   
Sbjct: 245 NVLSQLSPFLHFGQIAPQR---------VAIVIKKHGENHESIRDSVDSFLEELIVRREL 295

Query: 292 RHLMAFY-PSVCMGKPFIPWTEKI----EWN--KDSHLLQAWKQGYTGFPIIDAAMRQLN 344
                FY PS    + F  W +K      W+  K ++ L+  + G T   + +A    + 
Sbjct: 296 ADNFCFYTPSYDCFEGFPQWAQKTLDEHRWDPRKFTYTLEELEHGKTHDQLWNACQLDIL 355

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL--------LDGDLASNNGGWQWAA 396
             G +H+ LRM  A       +++W    E  M           +DG   +   G  W+ 
Sbjct: 356 FHGKLHSWLRMYWAK-----KILEWSKSPEEAMKAAIYLNDCYEIDGRDPNGYAGIAWSI 410

Query: 397 STGNDSV-PYFRIFN 410
              +D   P  +IF 
Sbjct: 411 GGVHDRAWPERQIFG 425


>gi|301090094|ref|XP_002895279.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans
           T30-4]
 gi|262100969|gb|EEY59021.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans
           T30-4]
          Length = 582

 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 26/215 (12%)

Query: 198 DYPFQAIDPMFPIGEQNALHILRKF-CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256
           D   +A+   F  GE+ A    +KF   + +  Y  +R+ P++   S LS YL  G +  
Sbjct: 282 DRSVKAVGWHFKGGEKAASACAKKFLTADNLVSYATKRNEPSLDAGSDLSLYLRYGHI-- 339

Query: 257 RQCWNR--LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAF----YPSVCMGKPF-- 307
             C  R  L    +  + + K G  S+L ELI  RE   +L+ +    Y S+C    +  
Sbjct: 340 --CVVRVVLAAHKLKGVKRAKEGLASFLEELIVRRELSVNLVVYNQDNYDSMCCLPSYAQ 397

Query: 308 IPWTEKIEWNKDSHLLQAWKQGY-TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           I   E  +  +D    +   + Y TG    +AA R+L   G MH  +RM    +  K LL
Sbjct: 398 ITLQEHADDKRDQLYSREQLENYQTGDRFWNAAQRELVVTGKMHGYMRM----YWGKKLL 453

Query: 367 VDWRIGEEYFMSQL-------LDGDLASNNGGWQW 394
              R  E+ F + L       LD   A++  G  W
Sbjct: 454 EWTRTPEDGFNAALVLNNKYALDAPDANSYAGVAW 488


>gi|321460192|gb|EFX71237.1| DNA photolyase 2 [Daphnia pulex]
          Length = 523

 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
           D     +D + P G ++ L  L  FC+ ++  Y E+R+ P +   S LSP+L  G +S +
Sbjct: 269 DRTVGEVDWITP-GTKSGLQELFNFCQRRLKMYAEKRNDPNLAALSNLSPWLHFGQISAQ 327

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG-KPFIPWTEKI-- 314
           +C   +K        K      +++ E I R        FY +     K    W ++   
Sbjct: 328 RCILEVK----GYKTKHAKSVDAYMEETIIRRELSDNFCFYNTNYDNLKGAANWAQETLE 383

Query: 315 --EWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             + +K   LL A   ++G T   + +A+  QL   G MH  LRM
Sbjct: 384 VHKKDKRPALLSAQQLEEGKTHDDLWNASQIQLTRTGKMHGFLRM 428


>gi|158999384|gb|ABW87016.1| cryptochrome [Musca domestica]
          Length = 72

 Score = 45.1 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 390 GGWQWAASTGNDSVPYFRIFN-PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           G W W +S+  + +    +   P    KR DP GT+I+ ++PEL  VP  +IH P
Sbjct: 4   GNWMWVSSSAFERLLDSSLVTCPVALAKRLDPLGTYIKQYVPELAKVPQLFIHEP 58


>gi|304393315|ref|ZP_07375243.1| photolyase family protein [Ahrensia sp. R2A130]
 gi|303294322|gb|EFL88694.1| photolyase family protein [Ahrensia sp. R2A130]
          Length = 505

 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 17/161 (10%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS-----QLSPYLSIGVLSPRQCWNR 262
           FPI  + A   L  F +++ + +    D   ++G S      L+P L++G+L+PRQ  N 
Sbjct: 227 FPIDHEGAAEWLNTFLEQRFHLFGPYEDA-IVKGESWLWHGVLTPMLNVGLLTPRQIVNE 285

Query: 263 LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
               F D    P +    ++ ++I WREF   + A Y  +      +       W     
Sbjct: 286 TL-AFADKHDVPINSLEGFIRQIIGWREF---MAATYADLG-----VEMRTTNHWKHTRK 336

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR-MITASFL 361
           +  ++  G TG   ID A+ ++N   + H+  R M+   F+
Sbjct: 337 IPHSFYDGTTGIGPIDDAIHRINDTAYAHHIERLMVLGGFM 377


>gi|85858841|ref|YP_461043.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB]
 gi|85721932|gb|ABC76875.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 140/374 (37%), Gaps = 60/374 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           L W++   R T N AL  A   ++A  + + VF    + + +   + R   F+   L   
Sbjct: 22  LYWMQASQRETCNHALEYAIRKANALCQPVVVFFGIVDDFPE--ANERHYFFMLEGLCDA 79

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++L ++GI      CS                 +  +  +R   +  V R  L  ++  
Sbjct: 80  KRTLEKRGIQLVIQHCS---------------PELGVVMMSRDASLVVVDRGYLRIQKAW 124

Query: 129 HRVICKSFDDSVLLPPGSIL-----NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             V   S D  ++     ++       + + Y   T  RK + Q L Q       + ++ 
Sbjct: 125 RNVAAASMDCPLIQVESDVVVPIEETSSKEEYSAAT-IRKKIHQKLNQY------LISLE 177

Query: 184 LTGPVTPSNIPRFFDYPFQAID---------------PMFPIGEQNALHILRKFCKEKVY 228
            T P+  S    F  +P   ++                 F  G +     L  F  +K+ 
Sbjct: 178 ETKPMADSLSLDFESFPIDDVERAILRLDIDRSVKCVSFFRGGFEEGRKHLDVFIDQKLE 237

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           +Y E R+ P +   S +SPYL  G +SP     R       +L   ++ + ++L ELI R
Sbjct: 238 HYAEHRNDPTLDCLSLMSPYLHFGQISPLYIALR-------ILNSGRTSSEAYLEELIVR 290

Query: 289 EFYRHLMAFYPSVCMGKPFIP-WTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMR 341
                   FY +       +P W +K      KD     +  +  + G T  P  +AA +
Sbjct: 291 RELGINFVFYNTHYDTFECLPGWAKKSLRTHEKDQRPYHYSRKELEDGKTHDPYWNAAQK 350

Query: 342 QLNTIGWMHNRLRM 355
           ++   G MH  +RM
Sbjct: 351 EMVLKGKMHGYMRM 364


>gi|256426122|ref|YP_003126775.1| deoxyribodipyrimidine photolyase-related protein [Chitinophaga
           pinensis DSM 2588]
 gi|256041030|gb|ACU64574.1| deoxyribodipyrimidine photolyase-related protein [Chitinophaga
           pinensis DSM 2588]
          Length = 492

 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 32/213 (15%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLS 255
           P  A    +P+  Q A H L +F +E+   +    D      +I   S L+P L+IG+L 
Sbjct: 214 PGDATTCRYPVTHQQAEHWLEQFLEERFRKFGIYEDAIVQTESILYHSMLTPALNIGLLL 273

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI 314
           P Q   +       +   P +    ++ +++ WREF R L     S      F       
Sbjct: 274 PMQILEKAIA-MAPVHKVPLNSLEGFIRQILGWREFIRILYRREGSKQRTTNF------- 325

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR-MITASFLV-----KDLLVD 368
            W+ +  +  ++  G TG P ID  + +L   G+ H+  R MI  +F++      D +  
Sbjct: 326 -WDHERPMPDSFYTGNTGIPPIDQTIHKLLRHGYTHHIERLMILGNFMLLCELHPDAVYQ 384

Query: 369 W------------RIGEEYFMSQLLDGDLASNN 389
           W             +   Y MSQ  DG L S  
Sbjct: 385 WFMELYIDAYDWVMVPNVYGMSQFADGGLMSTK 417


>gi|170744406|ref|YP_001773061.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46]
 gi|168198680|gb|ACA20627.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46]
          Length = 465

 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 14/164 (8%)

Query: 202 QAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
           +A+ P+  F  GE  A+  L  +       Y   R+ P     S +SPYL  G +SP   
Sbjct: 218 RAVRPVRRFRGGEDEAMARLDAYLAGPFAQYGTVRNRPEAGAASHMSPYLHFGQISPVAI 277

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIP-WTEKI--E 315
             +++         P+  A S+L ELI  RE   + + + P     +  +P W  +   E
Sbjct: 278 ALKVRAAAAG---GPEDKA-SYLEELIVRRELAMNHVHYQPGYDRYESAVPDWARRALAE 333

Query: 316 WNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              D     +   A ++G T     +AAMR++   G+MHN LRM
Sbjct: 334 HAGDRRDPLYDEAALEEGRTHDRHWNAAMREMRETGYMHNHLRM 377


>gi|87303557|ref|ZP_01086340.1| deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           WH 5701]
 gi|87281970|gb|EAQ73933.1| deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           WH 5701]
          Length = 504

 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 274 PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
           P +    +L ++I WREF R +   +      + F        WN    L   W  G TG
Sbjct: 299 PIASLEGFLRQVIGWREFVRGIDRVHGETQASRNF--------WNHRRRLAPCWTDGSTG 350

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE--EYFMSQLLD 382
            P +DAA+ +LN  G+ H+  R++  S L+  LL +    E   +FM + LD
Sbjct: 351 LPPLDAAIERLNRTGYNHHIERLMVISNLM--LLCEIHPAEVQRWFMERYLD 400


>gi|218514415|ref|ZP_03511255.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3]
          Length = 105

 Score = 44.3 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
          ++W R DLR+ DNKAL AA H S   +I+++I  PE      + A QS +++ SL  +  
Sbjct: 10 ILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQSWWLHHSLEALDG 68

Query: 71 SLSQK 75
          SL ++
Sbjct: 69 SLRKR 73


>gi|313672005|ref|YP_004050116.1| deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312938761|gb|ADR17953.1| Deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 444

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           F  GE  A  +LR F  EK  ++ E+R  P++   S LS YL  G +SP     ++ +E 
Sbjct: 211 FIGGESKADKLLRDFLNEKYLFFAEKRGDPSLDVESNLSFYLHFGFISPI----KILKEA 266

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP-WTEK--IEWNKDS---- 320
           + +   PK+    +   ++ RE   +   +  ++     F+P W  K  IE   D     
Sbjct: 267 IKIDTDPKNYETLFEQLVVRRELAHNFTYYCDNISDLFSFLPNWAVKTVIEHKDDIRKYL 326

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           + L+  +   T     +AA  +L   G +HN +RM
Sbjct: 327 YKLEDLENFKTHDKFWNAAQYELIHKGKIHNYMRM 361


>gi|283851297|ref|ZP_06368579.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B]
 gi|283573247|gb|EFC21225.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B]
          Length = 462

 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 101/256 (39%), Gaps = 47/256 (18%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
           P   I P    G + A   L  F  +++  Y ++R+ P    TS LSP+   G L+P+  
Sbjct: 214 PVAGITP----GPEAAREALAAFLADRLPAYADRRNDPNAGATSTLSPWFHHGHLAPQ-- 267

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP-------FIPWTE 312
             R   + ++   +  +GA ++L EL+ R   R L   Y   C+ +P          W +
Sbjct: 268 --RAALDALEAKKRAPAGAEAFLEELVVR---RELADNY---CLHEPAYDTLAALPAWAQ 319

Query: 313 KIEWNKDS------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           K      +      +  + ++   T   + +AA RQL   G +H  +RM    +  K +L
Sbjct: 320 KTLGAHAADPRPYRYTAREFETAATHSALWNAAERQLVRQGRLHGYMRM----YWAKKIL 375

Query: 367 VDWRIGEEYFMSQ--------LLDGDLASNNGGWQWAASTGND----SVPYF---RIFNP 411
            +W    E  ++          LDG   S   G  W+    +D    S P F   R  N 
Sbjct: 376 -EWSATPEAALATALSLNDRYALDGSDPSGVAGVLWSVGGLHDRPWASRPVFGQIRYMNA 434

Query: 412 TIQGKRFDPQGTFIRH 427
               ++FD      RH
Sbjct: 435 RGCRRKFDVDAYIARH 450


>gi|39997921|ref|NP_953872.1| deoxyribodipyrimidine photolyase [Geobacter sulfurreducens PCA]
 gi|39984866|gb|AAR36222.1| deoxyribodipyrimidine photolyase, putative [Geobacter
           sulfurreducens PCA]
 gi|298506859|gb|ADI85582.1| deoxyribodipyrimidine photolyase, putative [Geobacter
           sulfurreducens KN400]
          Length = 461

 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 147/373 (39%), Gaps = 40/373 (10%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A        A +  +F   P   R  G +ARQ  F+   L Q
Sbjct: 21  IYWMSRDQRVADNWALIHAQKLALARSAPLGVLFCLAP---RFLGATARQYRFMLKGLEQ 77

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+ +L++  I F         D    + ++  + RV+ L  +  ++   V+R+   +   
Sbjct: 78  VRAALNRLDIPFFLVT----GDPKGAVAAFTRRHRVSYLVTD--FDPLRVKREWKRQVAG 131

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  +     D   ++P    +    Q +  YT   K  I  L+   +   P P  R   P
Sbjct: 132 EISIPFDEVDAHNIVP--CWITSQRQEWGAYTIRPK--IHRLLPDFMEPFP-PLQRHPFP 186

Query: 188 ---VTPSNIPRFFDYPFQAIDPMFP------IGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                PS+      +    +D   P       GE+ A   L +F ++ +  Y  +R+ PA
Sbjct: 187 WQGALPSDAEWRETFTGMTLDESVPEVSWLASGEEAAQAALARFLEDGLAGYATRRNNPA 246

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAF 297
           + G S LSP+L  G LS      +   +       P     ++L ELI  RE   +   +
Sbjct: 247 VMGQSGLSPWLHFGQLS-----AQRVAQAAFAAAAPIESRDAFLEELIVRRELADNFCYY 301

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQ-------AWKQGYTGFPIIDAAMRQLNTIGWMH 350
             +      F  W ++   N+  H  +         +QG T   + +AA  ++   G MH
Sbjct: 302 NDAYDRFDGFPEWAQRT-LNRHRHDPRPQCYEHDVLEQGQTHDSLWNAAQLEMVRWGRMH 360

Query: 351 NRLRMITASFLVK 363
             LRM  A  L++
Sbjct: 361 GYLRMYWAKKLLE 373


>gi|301057335|ref|ZP_07198453.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2]
 gi|300448565|gb|EFK12212.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2]
          Length = 499

 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 26/183 (14%)

Query: 199 YPFQAIDPMFPIGEQNA---LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
           YP   I P  P GE  A   L +L++F    + +Y + R+ P    TS LSPYL  G +S
Sbjct: 227 YPIDHIIPPVP-GEGGAVRGLRMLKRFIMSGLPHYADGRNQPDQPVTSGLSPYLHFGHVS 285

Query: 256 PRQC---------WNRLK--EEFVDLLIKP----KSGAFSWLNELI-WREFY----RHLM 295
           P Q          W R K  E+ VD            A ++L++LI WRE      RH  
Sbjct: 286 PHQVFHEIARNQGWQRQKSAEKKVDGRRAGWWGMDENAEAFLDQLITWRELGFNMCRHDE 345

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +     + +      E  E +K  ++  L+ ++   T   + +AA  QL   G +HN L
Sbjct: 346 KYDRYASLPQWVRDTLEAHEKDKRPYVYALEDFENAQTHDSLWNAAQNQLVREGRIHNYL 405

Query: 354 RMI 356
           RM+
Sbjct: 406 RML 408


>gi|330814352|ref|YP_004358591.1| protein-like deoxyribodipyrimidine photolyase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487447|gb|AEA81852.1| protein-like deoxyribodipyrimidine photolyase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 469

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 14/159 (8%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLK 264
           P   ++A+ +   F KEK   + +  D   ++      S LSP +++G+++P     R  
Sbjct: 199 PTTRKDAIKLYLNFLKEKFALFGDYEDSMTVKSHTVFHSMLSPIINLGLITPATLI-RET 257

Query: 265 EEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            +F      P +    ++ ++I WREF R +   Y    +   F        +N    L 
Sbjct: 258 LDFAKANKIPLNSLEGYVRQIIGWREFMRGIYQNYEKRLLNTNF--------FNHQRKLS 309

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           ++W  G TG   +D A++     G+ H+  R++    L+
Sbjct: 310 KSWYDGTTGIVPLDHAIKNCLQFGYTHHIERLMVVCNLM 348


>gi|291286943|ref|YP_003503759.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884103|gb|ADD67803.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 446

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 148/377 (39%), Gaps = 54/377 (14%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHF--IYASL 65
           + W+  D R+ DN AL  A   ++++   +  VF   P+       SAR  HF  +   L
Sbjct: 22  IYWMNRDQRVRDNWALIKAMELAESRQSPMAVVFCLIPDY-----PSARNQHFRFMMEGL 76

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK---LFYNRQY--EINEVRRD 120
            ++   L    I F     +  D+  +++        VT    L +NR+   E+ EV   
Sbjct: 77  CEIDLELEYLKIPFFMISGNPVDELSKFIRQVGAGAVVTDFSPLKFNRKMKLELAEVINV 136

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSI---LNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            L+E    + V C+           +I   +N  L  + V  P    L Q   +    + 
Sbjct: 137 PLIEVDAHNIVPCRIASHKEEFAARTIRPKINGLLSQFLVEFP---KLKQQRYKWKGHTA 193

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            +   R+   +    IP  F          +P G + A   L  F    +  Y  +R+ P
Sbjct: 194 HIDWERV---INSFGIPNNF----------YPAGIRAADEALHNFVTGSLNGYNIKRNDP 240

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWR----EFYR 292
            I   S LSPYL  G +S ++C     E F  D  I+      ++  EL+ R    E Y 
Sbjct: 241 TIDHQSNLSPYLHFGNISAQRCALDAGEAFWADEDIR------AFKEELVVRRELAENYC 294

Query: 293 HLMAFYPSVCMGKPFIPWTEK-IEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTI 346
                Y SV        W +K IE ++D      +    ++Q  T  P+ +AA +++   
Sbjct: 295 FYNDHYDSVEGAH---SWAKKTIEEHRDDSREYIYGYDEFEQAKTHDPLWNAAQKEMAIK 351

Query: 347 GWMHNRLRMITASFLVK 363
           G MH  +RM  A  +++
Sbjct: 352 GKMHGYMRMYWAKKMLE 368


>gi|51859619|gb|AAU11091.1| class-II photolyase [Antonospora locustae]
          Length = 528

 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 95/453 (20%), Positives = 173/453 (38%), Gaps = 63/453 (13%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W+  D R+ DN AL  A   +    + +FI      R    + RQ  F+ A L +V+   
Sbjct: 100 WMSRDQRVQDNWALLCAQGIAVRHGLPLFICFCLVPRFLDATTRQFRFMLAGLREVETEA 159

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSY---CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            Q GI F   + S  +    +++ +   C+      L   R++         LL +RL+ 
Sbjct: 160 LQLGIAFHVLKGSAPEALPRFVEHHKIGCVVADFNPLRVVREW-------CSLLCERLRG 212

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-LTGP 187
            RV     D   ++P   + +      +   P     I   + A L   P  A+  ++GP
Sbjct: 213 MRVSVVQVDAHNIVPAWVVSDKQEAGARTMRP----KIHRHLPAFLTEYPPVAVHPVSGP 268

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-----GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            +        +   +A   +        G + A  +L  FC E+++ Y + R+ PA  G 
Sbjct: 269 ASVRVDWAALEASVRADTGVGDCSWIRSGTRAAFEVLDVFCSERLHAYADVRNDPARDGL 328

Query: 243 SQLSPYLSIGVLSPRQC------WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           S +SPY   G ++ ++       + R     VD+ ++           ++ RE   +   
Sbjct: 329 SNMSPYFHFGQIAVQRAVLVVCSFRRTHGVSVDVFVE---------EAVVRRELADNFCL 379

Query: 297 F---YPSVCMGKPFIPWT---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               Y SV     +   T    + +  + ++ L+  +   T   + +AA  Q+   G MH
Sbjct: 380 HNRNYDSVEGASSWARGTLDAHRADRREHTYTLEQLEHAQTHDELWNAAQTQMTRDGKMH 439

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQL--------LDGDLASNNGGWQWAASTGNDS 402
             +RM    +  K +L +W +  E  +           LDG   +   G  W+    +D 
Sbjct: 440 GFMRM----YWAKKIL-EWSVSPEEALRHAIYLNDRYELDGRDPNGYVGCMWSICGVHDR 494

Query: 403 V----PYF---RIFNPTIQGKRFDPQGTFIRHW 428
                P F   R  + +   ++FD  G +IR +
Sbjct: 495 AWAERPVFGKVRYMSYSGCLRKFD-VGCYIRRY 526


>gi|163840006|ref|YP_001624411.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
 gi|162953482|gb|ABY22997.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
          Length = 91

 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA+  TS+LSP+L  G LSP Q W  L++     +       F   +E+ WREF  H
Sbjct: 3   RDNPAMAATSKLSPHLRFGELSPFQVWAALRQS--PGIAAEDERVFR--SEVGWREFCWH 58

Query: 294 LMAFYPSVC 302
           L+  +P + 
Sbjct: 59  LLYHHPDLA 67


>gi|170595219|ref|XP_001902292.1| FAD binding domain of DNA photolyase family protein [Brugia malayi]
 gi|158590106|gb|EDP28860.1| FAD binding domain of DNA photolyase family protein [Brugia malayi]
          Length = 442

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           GE  AL +L  F    +  Y E+R+IP     S LSPY+  G+L+P     ++K+     
Sbjct: 184 GEDAALQVLDYFIVNNLNTYDEERNIPNSGKQSLLSPYIHFGMLNPIMIVVKVKQSEA-- 241

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFY 298
              PKS   ++L EL+ R    H    Y
Sbjct: 242 ---PKSAKDAFLEELVVRRELAHNFVXY 266


>gi|217074550|gb|ACJ85635.1| unknown [Medicago truncatula]
          Length = 220

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 37/176 (21%)

Query: 158 YTPFR----KALIQNLVQA--DLRSLPVPAIRLTGPVTPSNIPRFFDYPF---------- 201
           Y  FR    K  I+  ++A   L+ LP       G V   +IP   D             
Sbjct: 33  YGGFRDRVQKLEIRKTIEALDQLKGLPS-----RGDVQLGDIPTLMDLGLNPSAIMSQDG 87

Query: 202 -QAIDPMFPIGEQNALHILRKFCKE------KVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254
            Q  +     GE  AL  L++F  E      K +    Q  I     + ++SP+L++G L
Sbjct: 88  KQVPNSSMTGGETEALQRLKRFAAECEAQSNKGFKDGAQDSIYGANFSCKISPWLAMGCL 147

Query: 255 SPRQCWNRLKEEFVDLLI---------KPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           SPR  ++ LK+     +            K+G    + EL+WR+F+R +   Y S 
Sbjct: 148 SPRAMFDELKKTASSAVSASSSKNDGGSSKTGTNWLMFELLWRDFFRFITKKYSST 203


>gi|226228098|ref|YP_002762204.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27]
 gi|226091289|dbj|BAH39734.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27]
          Length = 495

 Score = 43.9 bits (102), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 81/381 (21%), Positives = 143/381 (37%), Gaps = 49/381 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+++  R+ DN  L AA   +D   + V +           SAR   FI        +
Sbjct: 38  LYWMQSTHRLDDNWGLRAAIRTADRLKLPVVVHQGLDPTYPHASARHHTFILQGARDTAR 97

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV--TKLFYNRQYEINEVRRDKLLEKRLQ 128
                GI +Q+       D    +D    +  V  T LF           R+++   R  
Sbjct: 98  QAEALGIHYQFVLRPQRTDDARVVDRLAARAYVVFTDLFPTAGV------RERV--ARFA 149

Query: 129 HRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--------ADLRSLPV 179
            RV C+    DSV   P  +   A    +   P    L+ + ++        +D+ +   
Sbjct: 150 QRVTCRVLAVDSVCTVPSGLFEKAEYAARTIRPKLARLLAHAIEPVEDHTPRSDVSTSLA 209

Query: 180 PAIRLT----GPVTPSNIPRFFDYPFQ------AID------PMFPIGEQNALHILRKFC 223
            ++R T    G + P +I +  D          AID      PM P G   A     +F 
Sbjct: 210 TSLRATVAEGGGLVPLDIAQMDDAAIARTVAGCAIDHDVCAVPM-PGGSSAANARWTRFL 268

Query: 224 KEKVYYYVEQRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +  +  Y E+R+  +  +GTS+LSPYL  G +S  +     ++  V       +   +++
Sbjct: 269 EHGLPQYDERRNEASDGEGTSRLSPYLHFGQISSARVVREAQQAGVG-----AANLDAFV 323

Query: 283 NEL-IWREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPI 335
            ++  WRE   +     P+         W ++       +   + +     ++  TG  +
Sbjct: 324 QQITTWRELSYNWCVRTPAFDQLSALPAWVQRTMQEHVNDPRPELYTRDQLERAQTGDRL 383

Query: 336 IDAAMRQLNTIGWMHNRLRMI 356
            +AA  +L   G +HN  RM+
Sbjct: 384 WNAAQTELVQEGIIHNYPRML 404


>gi|77920307|ref|YP_358122.1| deoxyribodipyrimidine photolyase [Pelobacter carbinolicus DSM 2380]
 gi|77546390|gb|ABA89952.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter carbinolicus
           DSM 2380]
          Length = 490

 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 78/186 (41%), Gaps = 25/186 (13%)

Query: 195 RFFDYPFQAIDPMFPI--GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG 252
           R  + P     P  P   G + A   L  F +E +  YV  R+ P    TS LSPYL  G
Sbjct: 221 RLHNLPIGQNTPAVPTKGGSEAARKALDLFLREHLDLYVAHRNQPQRDVTSGLSPYLRWG 280

Query: 253 VLSPRQCWNRLKEEF----VDLLIKPKSGAFSW----------LNELI-WREFYRHLMAF 297
            +S  +   RL +       DL ++ +     W          L++L+ WRE   HL  F
Sbjct: 281 HISSHEIVQRLLDREGWHPSDLGLETRGQRSGWWGVGADAEAFLDQLVTWRELG-HLFCF 339

Query: 298 YPSVCMGKPFIP-WTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
                     +P W +    +  +D     + L+ ++ G T  P+ +AA  QL   G +H
Sbjct: 340 KRHDYDRMESLPAWAQTTLQDHMQDPRPYLYSLEEFQAGRTHDPLWNAAQMQLVREGRLH 399

Query: 351 NRLRMI 356
           N LRM+
Sbjct: 400 NYLRML 405


>gi|291334324|gb|ADD93984.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
           MedDCM-OCT-S09-C3]
          Length = 496

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 21/167 (12%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL--KEEFV 268
           G   A   L+KF ++++  Y   R+ P   G S LSP+L  G +S  +  N +   +++ 
Sbjct: 247 GSVTARTELKKFIEQRLNTYHVDRNHPERHGGSGLSPWLHFGHISSFEIVNEVLTSQKWN 306

Query: 269 DLLIKP------------KSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI- 314
            +LI P              GA ++L+++I WRE        +P     +    W +K  
Sbjct: 307 PMLITPPHNGRRAGWWGLSEGAEAFLDQVITWRELGFVYCYEHPDHTSYQTLPEWAKKTL 366

Query: 315 -EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            E   D     +  +  +   T  P+ +AA  QL   G +HN LRM+
Sbjct: 367 EEHATDERPYVYTFEQLENAETHDPLWNAAQTQLRKEGIIHNYLRML 413


>gi|71733126|gb|AAZ40188.1| DNA-photolyase [Synechocystis sp. PCC 6803]
          Length = 60

 Score = 43.5 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLM 295
           GTSQLS  L  GV+SPR  W    E +     +    +  +W  EL WREFY+H +
Sbjct: 2   GTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFYQHCL 57


>gi|221057079|ref|XP_002259677.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase) [Plasmodium knowlesi strain H]
 gi|193809749|emb|CAQ40451.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase), putative [Plasmodium knowlesi strain H]
          Length = 923

 Score = 43.5 bits (101), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
           A+ P F + E+ A  +L+ FC + +  Y  +R+ P     S L PY+++G++S ++C   
Sbjct: 634 AVVPNFVLTEKKAEELLKDFCSKVLDKYNVKRNDPNSDAGSVLLPYVNLGIISSQRCVLE 693

Query: 263 L-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + K  + +  I   SG  S+ ++ I R+       +Y
Sbjct: 694 VHKHAYNNPSINAVSGKESFSDDFIMRKELADNYCYY 730


>gi|119357754|ref|YP_912398.1| deoxyribodipyrimidine photo-lyase type II [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355103|gb|ABL65974.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
           phaeobacteroides DSM 266]
          Length = 468

 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 12/152 (7%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           GE  A   L  F K ++  Y   R+ P     SQLSPYL  G +S +    R+ E     
Sbjct: 230 GETAAAESLENFIKSRLSGYATARNDPNSNALSQLSPYLHFGQISAQHVALRVAESRA-- 287

Query: 271 LIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKPFIPWTEKI----EWNKDSHL--L 323
              P+    ++L EL I RE   +   + PS    +    W ++       +K  +L  +
Sbjct: 288 ---PQKDKTAFLEELIIRRELSDNFCNYNPSYDRFEGIPAWAKQTLLLHGQDKREYLYTI 344

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +++  T   + +AA  +L   G +H  +RM
Sbjct: 345 DVFEKAATHDKLWNAAQSELVQSGKIHGYMRM 376


>gi|68304208|ref|YP_249676.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|67973037|gb|AAY84003.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus]
          Length = 489

 Score = 43.5 bits (101), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 148/373 (39%), Gaps = 48/373 (12%)

Query: 13  WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W+  D R+ DN AL  A    H +   +  VF  T      +  S RQ HF+   L +V+
Sbjct: 52  WMSRDSRVQDNWALIYAQELAHTAKLPLYVVFCMTKSF---NNASMRQFHFLIKGLEEVR 108

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKRLQ 128
               +  I F     S      +W+  + +   V    +N    + E V R   +  +L 
Sbjct: 109 VECQKLDITFVMLDGSADLVLNDWVREHDICAVVCD--FNPLRTVREWVSR---IRDQLP 163

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----- 183
             V     D   ++P     N   Q Y     F +  + + ++  L+  P P +R     
Sbjct: 164 DTVYFAQVDAHNVVPCWVASNK--QEYSAM--FMRKKLNSKLECYLKPFP-PVVRHEYRS 218

Query: 184 --LTGPVTPSNI-------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
             +  P T ++I        R  D     +D + P G  +AL++L +F +  +  Y   R
Sbjct: 219 SVVLDPCTTTHIDWQQLLASRDADVSVGPVDWIEP-GYISALNVLARFIRCNLLKYKMSR 277

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           + P ++  S +SP+   G +S ++    L    ++   K  SG  S +N+ I   F R  
Sbjct: 278 NNPVLKTQSNMSPFYHFGQISVQRVMLHLNSLKIN---KNDSGIDSNINDYIEECFVRRE 334

Query: 295 MA----FYPS---VCMGKPFIPWTEKIEWNKDSH-----LLQAWKQGYTGFPIIDAAMRQ 342
           +A    FY S     +G P       +    DS      LLQ ++   T   + +AA RQ
Sbjct: 335 LADNFCFYNSNYDTFLGAPNWAKETLVIHKSDSRQYIYSLLQ-FEHNQTHDELWNAAQRQ 393

Query: 343 LNTIGWMHNRLRM 355
           L   G +H  LRM
Sbjct: 394 LRNEGKIHGYLRM 406


>gi|297743900|emb|CBI36870.3| unnamed protein product [Vitis vinifera]
          Length = 190

 Score = 43.5 bits (101), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 29/152 (19%)

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQ-----------AIDPMFPIGEQNALHILRKF 222
           LR LP       G V    IP   D                 +     GE  AL  L+KF
Sbjct: 27  LRGLPA-----RGDVEAGEIPSLLDLGLSPSATLPQNGMSTANGSLVGGETEALQRLKKF 81

Query: 223 ---CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--- 276
              C+ +         I     + ++SP+L++G LSPR  ++ +K+     +    S   
Sbjct: 82  AAECQAQPPKGAANDSIYGANFSCKISPWLAMGCLSPRSMFDEIKKSASRTISASTSKDG 141

Query: 277 ------GAFSWLN-ELIWREFYRHLMAFYPSV 301
                    +WL  EL+WR+F+R +   Y S 
Sbjct: 142 GSGQSDTGMNWLMFELMWRDFFRFITKKYSSA 173


>gi|298162586|gb|ADI59660.1| cryptochrome [Paralichthys olivaceus]
          Length = 96

 Score = 43.1 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLV 367
           P    I W+++   L  W +G   FP I A M QL   G + +  R   A FL +  L +
Sbjct: 17  PICVMIPWDRNPKALAKWAEGRRSFPWIHAIMTQLTLDGRIDHLARHAVACFLTRGHLRI 76

Query: 368 DWRIGEEYFMSQLLDGD 384
            W+ G + F   LLD D
Sbjct: 77  TWKEGLKVFEELLLDAD 93


>gi|124006828|ref|ZP_01691658.1| photolyase protein family [Microscilla marina ATCC 23134]
 gi|123987509|gb|EAY27218.1| photolyase protein family [Microscilla marina ATCC 23134]
          Length = 425

 Score = 43.1 bits (100), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 32/206 (15%)

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWN 261
           P++     +A   L+ F  E++  +    D       I   S L+P L++G+L+PRQ  +
Sbjct: 143 PLYATNFADAEAWLQAFLTERLAEFGTYEDAIVQEEVILNHSVLTPMLNVGLLTPRQVID 202

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
                F      P +    ++ ++I WREF R +  +  +    K +  +T KI      
Sbjct: 203 NTL-AFSQAQQVPLNSLEGFVRQIIGWREFIRGVYQYKGTEERTKNYWGFTRKIP----- 256

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR-MITASFLV-------------KDLL 366
               ++ +G TG   +D  ++++   G+ H+  R M+  +F+V              +L 
Sbjct: 257 ---PSFYEGTTGITPVDVTIKKVLKTGYCHHIERLMVLGNFMVLCEFDPDEVYRWFMELF 313

Query: 367 V---DW-RIGEEYFMSQLLDGDLASN 388
           V   DW  +   Y MSQ  DG L S 
Sbjct: 314 VDAYDWVMVPNVYGMSQFADGGLMST 339


>gi|20092859|ref|NP_618934.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A]
 gi|19918164|gb|AAM07414.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A]
          Length = 462

 Score = 43.1 bits (100), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 12/155 (7%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           F  GE+ A   +  F   ++  Y   R+ P     S LSPYL  G +S ++    +++  
Sbjct: 228 FEPGEKAARKEMESFLAARLDSYNTLRNDPTKNALSNLSPYLHFGQISAQRVVLEVEKAK 287

Query: 268 VDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDS 320
            D    P+S   ++L+E L+W+E   +   + P     + F  W +K       +  K  
Sbjct: 288 SD----PESKK-AFLDEILVWKEIADNFCYYNPGYDSFESFPDWAKKSLNAHRNDRRKYI 342

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +  + ++ G T  P+ +A+  +L   G MH+ +RM
Sbjct: 343 YTFEEFEAGKTHDPLWNASQIELLRTGKMHSYMRM 377


>gi|110596745|ref|ZP_01385035.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM
           13031]
 gi|110341432|gb|EAT59892.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM
           13031]
          Length = 450

 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 115/293 (39%), Gaps = 45/293 (15%)

Query: 156 KVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQ 213
           + + P  K+L+  L+    +  P+ A   + PV  S+I      D+    ++ + P GE+
Sbjct: 160 RTFRPKIKSLLGELLTGFPQLEPLEATTESHPVDWSSISCSLKADHRVAPVEWLKP-GEE 218

Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            A + L  F ++++  Y E R+ P     S LSPYL  G +S +    R+ E  +     
Sbjct: 219 AAANCLDTFLEKRLSSYAELRNDPNSGVLSNLSPYLHFGQISAQYIALRVSESRM----- 273

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS------------H 321
           P     ++L ELI R        FY        +  +     W K+S            +
Sbjct: 274 PDESRSAFLEELIVRRELSDNYCFY-----NDRYDSFDGSPTWAKESLMNHRNDHREYLY 328

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL- 380
               +    T   + +AA  +L T G +H  +RM    +  K +L      E+ F + + 
Sbjct: 329 TADEFATAKTHDRLWNAAQLELVTTGKIHGYMRM----YWAKKILEWSESAEQAFETAMA 384

Query: 381 ------LDGDLASNNGGWQWAASTGNDSVPYF--------RIFNPTIQGKRFD 419
                 LDG   +   G  W+    +D  P+F        R  N +   ++FD
Sbjct: 385 LNDRYALDGRDPNGYAGVAWSIGGVHDR-PWFERPVYGKIRYMNASGCARKFD 436


>gi|189424834|ref|YP_001952011.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ]
 gi|189421093|gb|ACD95491.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ]
          Length = 447

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258
            + P F  GEQ A   L  F  + +  Y  +R+ P + G S LSP+L  G LSP++
Sbjct: 210 GVVPGFRPGEQAAFEALADFIAQGLNGYASRRNDPTVHGQSGLSPWLHFGHLSPQR 265


>gi|92429522|gb|ABD93505.2| DNA photolyase protein [Physalis sp. TA1367]
          Length = 190

 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 32/204 (15%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIYA 63
           VW RNDLR+ DN+ L AA HN    V+ V+   P   R +G S+         ++ F+  
Sbjct: 1   VWFRNDLRVHDNECLNAA-HNESMSVLPVYCFDP---RDYGKSSSGFDKTGPYRATFLIE 56

Query: 64  SLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           S+  ++K+L  +G  +V +  +          L           ++ +R+   +EV+ ++
Sbjct: 57  SVADLKKNLQARGSDLVVRIGKPETV------LVELAKAVGAEAVYAHREVSYDEVKGEE 110

Query: 122 LLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--DL 174
            +E  ++   V  K F  S L     +      M   Y  FR+ +    I+  ++A   +
Sbjct: 111 KIEGVMKDEGVDVKFFWGSTLYHVDDLPFKLEGMPTNYGGFREKVKGLEIRKTIEALDQM 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFD 198
           R LP       G V P  IP   D
Sbjct: 171 RGLPA-----RGDVEPGEIPSLVD 189


>gi|87311465|ref|ZP_01093585.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645]
 gi|87285877|gb|EAQ77791.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645]
          Length = 494

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 69/175 (39%), Gaps = 25/175 (14%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG---------VLS 255
           D +   G   A   L  F  +++  Y E+R+ P     S LSPYL  G          LS
Sbjct: 234 DAVMEGGSVAAQQTLDSFLGDRLLRYGEERNSPESDAASGLSPYLHFGHISAHDIFVQLS 293

Query: 256 PRQCWNRLKEEFVDLLIKPKSG-------AFSWLNELI-WREFYRHLMAFYPSVCMGKPF 307
            R+ WN       D     + G       A S+L+ELI WRE   ++ +   +    +  
Sbjct: 294 ERESWN--VSHLADKATGSREGWWNMSTDAESFLDELITWREVGYNMCSRESNYDRYQSL 351

Query: 308 IPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             W      E  KD     + L   +   T   + +AA  QL   G MHN LRM+
Sbjct: 352 PDWALVTLGEHQKDPRPYVYDLAQLESSRTHDQLWNAAQSQLVREGRMHNYLRML 406


>gi|188586748|ref|YP_001918293.1| Deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351435|gb|ACB85705.1| Deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 456

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 20/156 (12%)

Query: 211 GEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           GE  AL  L  F  +   +  Y+++++ P++Q TS+LSPYL  G +SP          F+
Sbjct: 228 GENQALEQLSGFLNQGKGLELYIQKKNDPSVQATSKLSPYLHFGQISPL---------FI 278

Query: 269 DLLIKPKSGAFS--WLNELIW-REFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS--- 320
            L +   +  ++  +L +LI  RE   +L+    +     P   W+ K   E   D    
Sbjct: 279 ALEVLKFTQDYNHEFLEQLIVRRELSLNLIEKNINYLTLSPLPQWSIKTLNEHRNDPRNN 338

Query: 321 -HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            + L+  +   T     +AA ++L + G +HN +RM
Sbjct: 339 FYTLEEIEAANTHDKYFNAAQKELMSRGTIHNYIRM 374


>gi|109899107|ref|YP_662362.1| deoxyribodipyrimidine photolyase-related protein [Pseudoalteromonas
           atlantica T6c]
 gi|109701388|gb|ABG41308.1| deoxyribodipyrimidine photolyase-related protein [Pseudoalteromonas
           atlantica T6c]
          Length = 503

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 32/235 (13%)

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-----SQLSPYLS 250
           F D+P      ++P+  ++A   L  F +++  Y+    D   ++G      S L+P L+
Sbjct: 222 FSDHPGNGQTIIYPVTHEDAQLWLTAFFEQRFKYFGRFED-AIVEGQNWLYHSVLTPMLN 280

Query: 251 IGVLSPRQCWNR----LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGK 305
           IG+L+P+Q  ++      E  VDL     +    ++ ++I WREF R   A Y  +    
Sbjct: 281 IGLLTPKQVISQAIQCADEHEVDL-----ASLEGFVRQIIGWREFMR---ATYSDIG--- 329

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN--RLRMITASFLVK 363
             +    +  W     +  A+  G TG   +D  ++++   G+ H+  RL ++   F + 
Sbjct: 330 --VSMRTQNHWQHKRKIPSAFYTGDTGIIPLDDTIKRILQTGYCHHIERLMVLGGFFFLC 387

Query: 364 DLLVDWRIGEEYFMSQLLDG---DLASNNGGWQWAASTGNDSV-PYFRIFNPTIQ 414
           +   D   G  +FM   +D     + SN       A  G  +  PYF   N  I+
Sbjct: 388 EFEPDEIYG--WFMDMFIDSYDWVMVSNVYAMSQHADGGQITTKPYFSGSNYIIK 440


>gi|156392837|ref|XP_001636254.1| predicted protein [Nematostella vectensis]
 gi|156223355|gb|EDO44191.1| predicted protein [Nematostella vectensis]
          Length = 382

 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 20/165 (12%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G    L +L  FCK+++ Y+   R+ P  +  S LSP+   G +SP++   R++    D 
Sbjct: 150 GTAEGLFMLESFCKDRLKYFHSSRNDPTKRALSNLSPWFHTGQISPQRAILRVR----DF 205

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW----------NKDS 320
             K +    S++ E I R        +Y +    + +       EW          +K  
Sbjct: 206 RSKFRESVESFIEECIIRRELSDNFCYYNN----EKYDSIEGTNEWARKTLNDHAKDKRE 261

Query: 321 HLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +L    K  +  T   + +AA RQL   G +H  LRM  A  +++
Sbjct: 262 YLYARGKLEKAQTHDDLWNAAQRQLVREGKLHGFLRMYWAKKILE 306


>gi|325187408|emb|CCA21946.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
          Length = 532

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 72/173 (41%), Gaps = 24/173 (13%)

Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256
            D    ++D +   GE  A    + F K K+  Y E R+ P   G+S LS YL  G +SP
Sbjct: 283 LDRSVVSVDSIIG-GEDEAERHTQDFAKNKLSKYAEARNEPGADGSSNLSCYLHYGHISP 341

Query: 257 RQCWNRLKEEFVDLLIK------PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIP 309
              W       + LL+K       K+   ++L E+I  RE   + + + P+       IP
Sbjct: 342 --VW-------IALLVKNIDNENSKNSRDAFLEEMIVRRELSVNFVVYNPNFYDSFEGIP 392

Query: 310 WTEKIEWN-----KDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              K   N     K  H+  L   + G T     +AA  ++   G MH  +RM
Sbjct: 393 NFAKKTLNDHRGDKRPHIYSLDDLESGRTDDNYWNAAQLEVVHSGQMHGYMRM 445


>gi|221505029|gb|EEE30683.1| DNA photolyase, putative [Toxoplasma gondii VEG]
          Length = 631

 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 22/169 (13%)

Query: 205 DPMFPI-----GEQNALHILRKFCKEK-VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258
           DP  P+     G + AL +L  F   K +  Y + R+ P     S LSPY+  G +S ++
Sbjct: 277 DPPEPLDSWKPGTKAALELLHSFATPKNLAEYGKSRNDPVAGVQSDLSPYIHFGHISVQR 336

Query: 259 CW---NRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYP--SVCMGKPFIPWTE 312
           C    ++LK    D  +  K G  S+++E++ R +   + + F P      G P   W +
Sbjct: 337 CLLEVSKLKSTAADKTL--KEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPL--WAQ 392

Query: 313 KI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +       +  +  +   A + G T   + +AA  QL   G MH  LRM
Sbjct: 393 QTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQLQLVRDGKMHGYLRM 441


>gi|221481951|gb|EEE20317.1| DNA photolyase, putative [Toxoplasma gondii GT1]
          Length = 631

 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 22/169 (13%)

Query: 205 DPMFPI-----GEQNALHILRKFCKEK-VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258
           DP  P+     G + AL +L  F   K +  Y + R+ P     S LSPY+  G +S ++
Sbjct: 277 DPPEPLDSWKPGTKAALELLHSFATPKNLAEYGKSRNDPVAGVQSDLSPYIHFGHISVQR 336

Query: 259 CW---NRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYP--SVCMGKPFIPWTE 312
           C    ++LK    D  +  K G  S+++E++ R +   + + F P      G P   W +
Sbjct: 337 CLLEVSKLKSTAADKTL--KEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPL--WAQ 392

Query: 313 KI-----EWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +      +  ++ H    A + G T   + +AA  QL   G MH  LRM
Sbjct: 393 QTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQLQLVRDGKMHGYLRM 441


>gi|15678924|ref|NP_276041.1| DNA deoxyribodipyrimidine photolyase (photoreactivation)
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2507184|sp|P12769|PHR_METTH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|639674|dbj|BAA06411.1| photolyase [Methanothermobacter thermautotrophicus]
 gi|2622000|gb|AAB85402.1| DNA deoxyribodipyrimidine photolyase (photoreactivation)
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 445

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 27/232 (11%)

Query: 137 DDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
           + +V++P  +  +        + P  ++ L + +V   +R+L + ++ L       +  R
Sbjct: 141 ESNVIVPVETASDKEEYSAGTFKPKIKRHLKRFMVPLRMRTLKMDSLDLEPGPEFEDAVR 200

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
            F  P      +F  G   AL I  +F +EK+  +   R+ P     S +SPYL  G +S
Sbjct: 201 DFRAPEDLEPSVFRGGTSTALSIFSEFLREKLECFERYRNDPVKNCLSNMSPYLHFGQIS 260

Query: 256 PRQCWNRLKE-----EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-CMGKPFIP 309
           P     R  E     EF++ LI  +  + +++          H    Y S+ C+ +    
Sbjct: 261 PLYLALRASEAGECPEFLEELIVRRELSMNFV----------HYSDSYSSISCLPE---- 306

Query: 310 WTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           W ++       +  +  + L+  +   T  P  +AA +++   G MH  +RM
Sbjct: 307 WAQRTLMDHVADPREYEYSLRELESASTHDPYWNAAQQEMVITGKMHGYMRM 358


>gi|313228121|emb|CBY23271.1| unnamed protein product [Oikopleura dioica]
          Length = 361

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 122/313 (38%), Gaps = 43/313 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH---FIYASLLQ 67
           L   R D R+ DN    AA   SD K+I  FI TPEQ      S +  +   F+  SL  
Sbjct: 8   LFIFRRDYRLFDNVGWIAAAKASD-KIIPAFIFTPEQIDASKNSYKNDNCVQFMIESLKD 66

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + K L  K  +F         D I           V  ++ N  Y     +RD  +E   
Sbjct: 67  LDKQLEGKLSLFYGANTVVVADLISEFG-------VDAVYVNADYTPYSKKRDADIEAIC 119

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLT 185
            +H+V   S  D  L+ PG I+       K  T F  +    +++   R S   P I  +
Sbjct: 120 DEHQVPFVSSHDMCLVDPGEIV------IKEGTKFEPSFFNKVMELKTRKSEAAPEIS-S 172

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI----GEQNALHILRKFCKEK-------VYYYVEQR 234
             V  S     +    +  D    I    G   AL I+ K   +K       V     + 
Sbjct: 173 EKVKKSEFSIDWKKTKEFYDKNDKIELKGGRSVALKIIEKVKSDKFQKQYGCVPTAFREG 232

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
             P ++ T++L+ YL  G +S R+    + EEF  L  +        + + I R+++ H+
Sbjct: 233 TFPKMK-TTELAAYLRFGCVSTRE----VVEEFEKLNKR------MLITQTIRRDYWVHM 281

Query: 295 MAFYP-SVCMGKP 306
              +P  + +GKP
Sbjct: 282 FHNFPHQMGIGKP 294


>gi|70934909|ref|XP_738613.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase) [Plasmodium chabaudi chabaudi]
 gi|56514975|emb|CAH79340.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase), putative [Plasmodium chabaudi chabaudi]
          Length = 368

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           F   E+ A  +L  FCK K+  Y  +R+ P     + L PY+++G++S ++C   + +  
Sbjct: 173 FVCTEKKARDVLEDFCKNKLDKYGVKRNDPNYDTINLLMPYINLGIISSQRCILEVNKYA 232

Query: 268 VDLLIKPKSGAFSWLNE--LIWREFYRHLMAF---YPSVCMGKPFIPWT-EKIEWNKDSH 321
           +       S    + N+  LI +E   +   +   Y +    K +   + +K E +K SH
Sbjct: 233 LQFPSIHTSSGKEYFNDDLLIKKELADNFCYYNKNYDNFNGAKDWAKESLKKHELDKRSH 292

Query: 322 L--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           L   + ++   T   I +    QL   G +H  LRM
Sbjct: 293 LYDYEDFRNARTHNDIWNCCQLQLVNEGTIHEFLRM 328


>gi|312143870|ref|YP_003995316.1| DNA photolyase FAD-binding protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904521|gb|ADQ14962.1| DNA photolyase FAD-binding protein [Halanaerobium sp.
           'sapolanicus']
          Length = 458

 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 11/155 (7%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL--- 263
            F  G Q A   L +F   K+  Y E+R+IP     S LSPYL  G +S ++   R    
Sbjct: 220 FFKGGYQAAEQKLNEFLTNKIADYGEKRNIPYFDYQSDLSPYLHFGQISAQEIALRALEN 279

Query: 264 ---KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
               EEF++ LI  +  +F+++     + +   L    P            +K ++N   
Sbjct: 280 SKEAEEFLEELIVRRELSFNFV--YYNQNYDGSLKDVLPDWAAKSLKKHAADKRDYN--- 334

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +  +  K   T     +AA  ++   G MHN +RM
Sbjct: 335 YSYEQLKNAETHDQYWNAAQTEMKITGKMHNYMRM 369


>gi|218780190|ref|YP_002431508.1| deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761574|gb|ACL04040.1| Deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 456

 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 89/230 (38%), Gaps = 32/230 (13%)

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
           I +  D+ +LLP    L + ++ +          IQ L  +D  SL      L  P TP 
Sbjct: 167 INRELDNFLLLPEKCALKNKVRDFD---------IQGLDLSDPASL---LKNLGMPETPP 214

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
            +  FF             G   A   + KF ++ +  Y    + P +   S + PYL  
Sbjct: 215 GVSAFFKG-----------GASAAQKRMDKFIQKSLDNYSRHHNRPDLADVSGMGPYLHF 263

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G +S      R+K    D    P++ A      ++ RE   + + F P+         W 
Sbjct: 264 GQVSAAALALRVKN-LKD--ADPEAQAAYLEQIIVRRELAMNFVHFTPNYDQYACLPTWA 320

Query: 312 EKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +K   E  +D     +     +   T  P  +AAMR++   G+MHN +RM
Sbjct: 321 QKTLKERAQDPRDPLYTPDQLEACDTHDPYWNAAMREMVVTGYMHNHMRM 370


>gi|324506249|gb|ADY42672.1| Deoxyribodipyrimidine photo-lyase [Ascaris suum]
          Length = 549

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           D  F  GE  A  +L  F   K+  Y   R+IP  +  S LSPYL  G++S  +   R+K
Sbjct: 218 DSGFVGGETVAQRMLSFFISNKLVSYHPGRNIPGSKYQSLLSPYLHFGMISAIEIIKRVK 277

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +        PK    S++ EL+ R    H   +Y
Sbjct: 278 DAKA-----PKHAIDSFIEELLVRRDLSHNFVYY 306


>gi|68076095|ref|XP_679967.1| DNA photolyase FAD binding domain [Plasmodium berghei strain ANKA]
 gi|56500825|emb|CAH99772.1| FAD binding domain of DNA photolyase, putative [Plasmodium berghei]
          Length = 812

 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           F   E+ A  IL  FCK K+  Y  +R+ P     + L PY+++G++S ++C   + +  
Sbjct: 513 FVCTEKKAKEILENFCKNKLDKYSVKRNDPNYDTINLLIPYINLGIISSQRCILEVNKYA 572

Query: 268 VDLLIKPKSGAFSWLNE--LIWREFYRHLMAF---YPSVCMGKPFIPWT-EKIEWNKDSH 321
           +       S    + N+  LI +E   +   +   Y +    K +   + +K E +K +H
Sbjct: 573 LQFPSIHASSGKEYFNDDLLIKKELADNFCYYNKNYDNFNGAKDWAKESLKKHELDKRNH 632

Query: 322 L--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           L   + ++   T   I +    QL   G +H  LRM
Sbjct: 633 LYDYEDFRSARTHNDIWNCCQLQLVNEGTIHEFLRM 668


>gi|327342146|gb|AEA50860.1| cry1-2 [Populus tremula]
          Length = 104

 Score = 42.0 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           +VW R DLR+ DN AL A        V+AVF+  PE+   H    R S  ++  SL  + 
Sbjct: 8   IVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEE-EGHYYPGRVSRWWLKQSLAHLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
            SL   G      + +   DS+  L         T+LF+N  Y
Sbjct: 65  SSLRSLGTSLVTKRST---DSVSTLLEVIKSTGATQLFFNHLY 104


>gi|124506191|ref|XP_001351693.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase), putative [Plasmodium falciparum 3D7]
 gi|23504621|emb|CAD51500.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase), putative [Plasmodium falciparum 3D7]
          Length = 1113

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 26/165 (15%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           F   EQ A  IL+ FC +K+  Y  +++ P  +  + L+PY++ G++S ++C        
Sbjct: 829 FVCTEQKAHEILQNFCSKKLERYSLKKNDPNSEMINLLTPYINFGIISSQRCV------- 881

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC-----MGKPFIPWTEKIEWNKDS-- 320
             L +   + ++  +N +  +E +   M     +        K +  +    +W KDS  
Sbjct: 882 --LEVNKYANSYPSINTISGKELFSEEMIMKKELADNFCYYNKNYDNFNGGKDWAKDSLK 939

Query: 321 ----------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                     +    +K   T   + +    QL   G +H  LRM
Sbjct: 940 KHDSDKREYLYDFDDFKNAKTHDDLWNCCQLQLINEGIIHEFLRM 984


>gi|92429524|gb|ABD93506.2| DNA photolyase protein [Solanum lycopersicum]
          Length = 189

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 32/203 (15%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIYAS 64
           W RNDLR+ DN+ L AA HN    V+AV+   P   R +G S+         ++ F+  S
Sbjct: 1   WFRNDLRVHDNECLNAA-HNESMSVLAVYCFDP---RDYGKSSSGFDKTGPYRASFLIDS 56

Query: 65  LLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           +  ++K+L  +G  +V +  +          L           ++ +R+   +EV+ +  
Sbjct: 57  VADLRKNLQARGSDLVVRIGKPETV------LVELAKAVGAEAVYAHREVSHDEVKGEDK 110

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--DLR 175
           ++  ++   +  K F  S L     +     QM   Y  FR+ +    ++  ++A   LR
Sbjct: 111 IDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLR 170

Query: 176 SLPVPAIRLTGPVTPSNIPRFFD 198
            LP       G V P  IP   D
Sbjct: 171 GLPA-----RGDVEPGEIPSLVD 188


>gi|237837047|ref|XP_002367821.1| DNA photolyase, putative [Toxoplasma gondii ME49]
 gi|211965485|gb|EEB00681.1| DNA photolyase, putative [Toxoplasma gondii ME49]
          Length = 631

 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 22/169 (13%)

Query: 205 DPMFPI-----GEQNALHILRKFCKEK-VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258
           DP  P+     G + AL +L  F   K +  Y + R+ P     S LSPY+  G +S ++
Sbjct: 277 DPPEPLDSWKPGTKAALELLHSFATPKNLAEYGKSRNDPLAGVQSDLSPYIHFGHISVQR 336

Query: 259 CW---NRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYP--SVCMGKPFIPWTE 312
           C    ++LK    D  +  K G  S+++E++ R +   + + F P      G P   W +
Sbjct: 337 CLLEVSKLKSTAADKTL--KEGVMSFIDEVVVRSQLSDNFVFFNPHYDDIKGAPL--WAQ 392

Query: 313 KI-----EWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +      +  ++ H    A + G T   + +AA  QL   G MH  LRM
Sbjct: 393 QTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQLQLVRDGKMHGYLRM 441


>gi|227553401|ref|ZP_03983450.1| conserved hypothetical protein [Enterococcus faecalis HH22]
 gi|227177452|gb|EEI58424.1| conserved hypothetical protein [Enterococcus faecalis HH22]
          Length = 80

 Score = 42.0 bits (97), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
          ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4  VIWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70 KSLSQKG 76
          + + Q+ 
Sbjct: 61 ERIDQEA 67


>gi|159469690|ref|XP_001692996.1| CPH-like protein [Chlamydomonas reinhardtii]
 gi|158277798|gb|EDP03565.1| CPH-like protein [Chlamydomonas reinhardtii]
          Length = 443

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS 54
          LVW RNDLR+ DN AL  AC  S + V+ V++  P  + + G S
Sbjct: 45 LVWFRNDLRLHDNPALEQACRQS-SSVLPVYVFDPRDYGKAGYS 87


>gi|83315336|ref|XP_730750.1| DNA photolyase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490568|gb|EAA22315.1| FAD binding domain of DNA photolyase, putative [Plasmodium yoelii
           yoelii]
          Length = 849

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 22/163 (13%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW---NRLK 264
           F   E+ A  IL  FCK K+  Y  +R+ P     + L PY+++G++S ++C    N+  
Sbjct: 549 FVCTEKKAREILEDFCKNKLDKYSVKRNDPNYDTINLLIPYINLGIISSQRCILEVNKYA 608

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---- 320
            +F    I   SG   + ++L+ ++       FY      K +  +    +W K+S    
Sbjct: 609 LQFPS--IHASSGKEYFNDDLLIKKELADNFCFY-----NKNYDNFNGAKDWAKESLKKH 661

Query: 321 ------HL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                 HL   + ++   T   I +    QL   G +H  LRM
Sbjct: 662 ELDKRNHLYDYEDFRNARTHNDIWNCCQLQLINEGTIHEFLRM 704


>gi|9633937|ref|NP_052016.1| gp127L [Rabbit fibroma virus]
 gi|6578656|gb|AAF18010.1|AF170722_128 gp127L [Rabbit fibroma virus]
          Length = 445

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 103/256 (40%), Gaps = 34/256 (13%)

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI-----GEQNALHILR 220
           IQ L+   L   P   I+   PV    +  F       +D + PI     G +  +  LR
Sbjct: 167 IQKLLTTYLTKFP-SVIKHPYPVQDVYVEDFT----PTLDDVSPIRGITAGNKGGMRKLR 221

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            F K K+ YY E ++ P +   S LSP+L  G LS ++    + E        P+S A +
Sbjct: 222 AFLKHKLRYYHEFKNDPTVDACSGLSPWLRYGHLSAQRV---VLETVAYTSTYPESVA-T 277

Query: 281 WLNELIWR----EFYRHLMAFYPSVCMGKPFIPWT---EKIEWNKDSHLLQAWKQGYTGF 333
           +L+E++ R    + + +    Y S+    P+   T    + +     +   + +   T  
Sbjct: 278 FLDEIVVRRELSDNFCYYNKLYDSITSTHPWALRTLDDHRQDLRPYLYDTSSLEHARTHD 337

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL--------LDGDL 385
           P+ + A  Q+   G MH  LRM  A       +++W    E  +S          LDG  
Sbjct: 338 PLWNTAQLQMINEGKMHGYLRMYWAK-----KILEWSKTPESALSVCIYLNDKYELDGTD 392

Query: 386 ASNNGGWQWAASTGND 401
            +   G  WA +  +D
Sbjct: 393 PNGYVGCLWAVAGLHD 408


>gi|328784628|ref|XP_003250474.1| PREDICTED: deoxyribodipyrimidine photo-lyase [Apis mellifera]
          Length = 480

 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 11/160 (6%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G +N +  L  F + ++  Y ++R+ P     S LSP+   G++S ++C   +K E+  L
Sbjct: 242 GYENGIKELENFLQNRLKKYGDERNNPLSNAISNLSPWFHFGMISVQRCILEIK-EYKKL 300

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFY-PSVCMGKPFIPWT------EKIEWNKDSHLL 323
               K    S++ E I R+       FY     + +   PW        + +  K  + L
Sbjct: 301 Y---KKSVESFMEEAIIRKELSDNFCFYNEKYDLIEGAYPWAIETLNKHRKDKRKYIYFL 357

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              +   T   + +A   Q+ TIG MH  LRM  A  +++
Sbjct: 358 NHLENSETHDDLWNACQNQMVTIGKMHGFLRMYWAKKILE 397


>gi|304315052|ref|YP_003850199.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis
           str. Marburg]
 gi|313104153|sp|P58818|PHR_METTM RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|302588511|gb|ADL58886.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis
           str. Marburg]
          Length = 444

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 17/162 (10%)

Query: 202 QAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW 260
           + ++P +F  G   A+ +  +F  EK+  + + R+ P     S +SPYL  G +SP    
Sbjct: 206 EELEPSIFSGGASEAIRLFDEFLSEKLACFEKYRNDPVKNCLSNMSPYLHFGHISPL--- 262

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK--IEWN 317
                 ++ +          +L ELI  RE   + + +  +    +    W +K  +E  
Sbjct: 263 ------YLAMKASKTGECPEFLEELIVRRELSMNFVHYSDNYSSIRCLPEWAQKTLMEHA 316

Query: 318 KD----SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +D     + L+ +++  T  P  +AA +++   G MH  +RM
Sbjct: 317 RDPKEYEYTLREFEEARTHDPYWNAAQKEMVITGKMHGYMRM 358


>gi|227553400|ref|ZP_03983449.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis
           HH22]
 gi|227177451|gb|EEI58423.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis
           HH22]
          Length = 178

 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 10/134 (7%)

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-----LTGPVT 189
           SF D+ L     I  +    Y+V+TP+      N  +   +  P+P         +  + 
Sbjct: 41  SFQDAYLHGSEEIKKNDGSKYQVFTPY-----YNKWKEAPKETPIPVSYTAEKIFSACLF 95

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
           P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS +L
Sbjct: 96  PEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTFL 155

Query: 250 SIGVLSPRQCWNRL 263
             G LS R  W  L
Sbjct: 156 RTGELSIRTIWQEL 169


>gi|188579437|ref|YP_001922882.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
 gi|179342935|gb|ACB78347.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
          Length = 476

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 79/381 (20%), Positives = 142/381 (37%), Gaps = 50/381 (13%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A    S  L W+    R   N AL  A   ++ + + V +           +AR   F
Sbjct: 31  LPARDGASYVLYWMGLSQRARFNPALEYAVEEANGRGLPVLVCYGLAEGIPEANARHWAF 90

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   + +V   L+++GI +   +    + ++              +  +R Y +  VRR 
Sbjct: 91  LLEGMAEVGPELAKRGIAYVARRQPPVETAL------LYAADAALVICDRNY-LKPVRR- 142

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSIL---NHALQMYKVYTPFRKALIQNLVQADLRSL 177
                    R  C+       +          H +    +    R+ L + LV  + RS+
Sbjct: 143 --FYADFAARAPCRVVQVEGEVVVPVETASPKHEVAARTLRPKIRRLLPEYLVPLEERSV 200

Query: 178 PVPAIRLTGPVTP--SNIPRFFDY--PFQAIDPM--FPIGEQNALHILRKFCKEKVYYYV 231
              A  L+   T   S++PR        Q++ P+  F  G   A   L  +   +  +Y 
Sbjct: 201 AHRADHLSFESTLDLSDVPRLVASLKADQSVRPVRRFKGGTTQAEATLSHYLDARFNHYA 260

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-------FSWLNE 284
           + R  P     S +SPYL  G +SP           V + +K ++ A        ++L E
Sbjct: 261 QIRGRPEAGAASHMSPYLHYGQISP-----------VAIALKVQAAATGGEDDKAAYLEE 309

Query: 285 LI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---------LLQAWKQGYTGFP 334
           LI  RE   + + + P+    +    W  K     D+H           + +++G T   
Sbjct: 310 LIVRRELAMNHIYYEPNYDSYEAAPAWARK---TLDAHRGDPRPYLYTPEQFERGETHDR 366

Query: 335 IIDAAMRQLNTIGWMHNRLRM 355
             +AAM ++   G+MHN +RM
Sbjct: 367 YWNAAMMEMRETGYMHNHMRM 387


>gi|269122091|ref|YP_003310268.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC
           33386]
 gi|268615969|gb|ACZ10337.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC
           33386]
          Length = 453

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 108/269 (40%), Gaps = 46/269 (17%)

Query: 11  LVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + W++  +R + N +L  A H  N   K + V      ++ +  ++ R  +F++ SL   
Sbjct: 22  IYWMQRSIRSSYNHSLEYAIHLANDLKKNLLVIFCFDRKFSE--MNERSCYFLFESLKDA 79

Query: 69  QKSLSQKGIVFQYHQCSNFDDSI-EWLD-SYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +K+L  +GI F     S     I E+   S C+      L Y R+       R+++ EK 
Sbjct: 80  EKNLKDRGIRFIVLDSSPLITKILEYSKRSVCIITDRAYLKYLRKI------REEVGEK- 132

Query: 127 LQHRVICKSFDDSVLLPPGSI------------LNHALQMYK----VYTPFRKALIQNL- 169
           +  R+I    D  V +   S+            L+  L  Y      YT +    +  + 
Sbjct: 133 VSVRMIQIESDVVVPIEIASLKEEYSARTLRGKLHKVLDFYLNKDFEYTKYEMNYLDEIK 192

Query: 170 VQADLRSLP--VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
              DL  +   + ++ +   V  SN               F  GE  A  IL  F  EK+
Sbjct: 193 TDFDLEKIHEIIESLNIDKTVRKSN--------------YFTGGENTAKKILENFISEKL 238

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256
             Y + R+ P ++  S LSPYL  G +SP
Sbjct: 239 EGYSKFRNNPELEYQSNLSPYLHFGNISP 267


>gi|197105770|ref|YP_002131147.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium
           zucineum HLK1]
 gi|196479190|gb|ACG78718.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium
           zucineum HLK1]
          Length = 455

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 13/133 (9%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   R  P     S LSPYL  G +SP +    ++E  V       SG  ++L ELI R 
Sbjct: 240 YEADRSRPEAGAVSHLSPYLHFGQISPVEIALAVREAGV------VSGVATYLEELIVRR 293

Query: 290 FYRHLMAFYPSVCMGKPFIP-WTEKIEWNKDS----HLL--QAWKQGYTGFPIIDAAMRQ 342
                 AF          +P W  +   +  S    HL     ++   T     +AAM +
Sbjct: 294 ELAMNHAFQAPAYDRYEVLPEWARQTLADHASDPRPHLYTRDQFEAAETHDSYWNAAMLE 353

Query: 343 LNTIGWMHNRLRM 355
           +   G+MHNRLRM
Sbjct: 354 MRATGYMHNRLRM 366


>gi|33865778|ref|NP_897337.1| photolyase family protein [Synechococcus sp. WH 8102]
 gi|33632948|emb|CAE07759.1| photolyase protein family [Synechococcus sp. WH 8102]
          Length = 495

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 19/157 (12%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRL 263
           +PI  + A   L  F  E++  +    D  + Q        L+P L+IG+L+P+Q  +R 
Sbjct: 224 YPIDHKEASRWLDNFLDERLVQFGAYEDAISTQHQVMWHGVLTPMLNIGLLTPQQVLDRT 283

Query: 264 --KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KD 319
             + E  D+ +    G   ++ ++I WREF   +   +        F        W  +D
Sbjct: 284 LARAEVGDVPLNSLEG---FIRQIIGWREFMAAMYRRHGVTMRNGNF--------WEVED 332

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             + +A+  G TG P ID A+      G+ H+  R++
Sbjct: 333 RPIPEAFYTGSTGLPPIDDAISHALDTGYCHHIERLM 369


>gi|464378|sp|P34205|PHR_CARAU RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|222872|dbj|BAA01987.1| DNA photolyase [Carassius auratus]
          Length = 556

 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 12/160 (7%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G    +++L  F  +++  +   R+ P     S LSP++  G LS ++   ++K E    
Sbjct: 310 GTSGGMNMLESFIDQRLRLFATHRNNPNYDALSHLSPWIHTGQLSAQRVVKQVKRE---- 365

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFY-PSVCMGKPFIPWTEKI--EWNKDS----HLL 323
                    S++ EL+ R        FY PS         W +K   +  KDS    +  
Sbjct: 366 -KNASESVASFIEELVVRRELADNFCFYNPSYDNISGAYDWAKKTLQDHAKDSRQYLYTK 424

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +  +   T   + +AA RQL + G MH  LRM  A  +++
Sbjct: 425 EQLENAKTHDQLWNAAQRQLVSEGKMHGFLRMYWAKKILE 464


>gi|165924275|ref|ZP_02220107.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Coxiella burnetii
           RSA 334]
 gi|165916280|gb|EDR34884.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Coxiella burnetii
           RSA 334]
          Length = 341

 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 76/207 (36%), Gaps = 27/207 (13%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEFVD 269
           GEQ A+ +   F   ++  Y   R+ P + G S LSPY   G L+P R  W+  + +   
Sbjct: 126 GEQAAMQVFADFETHRLQSYPADRNNPCMNGQSNLSPYFHFGQLAPQRVAWDIWQSD--- 182

Query: 270 LLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKPFIPWTEK--IEWNKDSHL---- 322
                +    S+L EL I RE   +   +         F  W  K       D  L    
Sbjct: 183 ---TDQESKESYLEELIIRRELSDNYCYYTADYDHTNAFPDWARKSLAAHRLDPRLSVAN 239

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL-- 380
           L   +   T   + +   R+L   G +H  LRM  A       +++W    E  M+    
Sbjct: 240 LHILENASTEDELWNGCQRELTGWGKLHGYLRMYWAK-----KILEWSPSPEEAMANAIF 294

Query: 381 ------LDGDLASNNGGWQWAASTGND 401
                 LDG   +   G  W+    +D
Sbjct: 295 LNDKYSLDGRDPNGYAGIAWSIGGVHD 321


>gi|92429534|gb|ABD93511.2| DNA photolyase protein [Solanum tuberosum]
          Length = 189

 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 32/203 (15%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIYAS 64
           W RNDLR+ DN+ L AA HN    V+AV+   P   R +G S+         ++ F+  S
Sbjct: 1   WFRNDLRVHDNECLNAA-HNESMSVLAVYCFDP---RDYGKSSSGFDKTGPYRASFLIES 56

Query: 65  LLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           +  ++K+L  +G  +V +  +          L           ++ +R+   +EV+ +  
Sbjct: 57  VADLRKNLQARGSDLVVRIGKPETV------LVELAKAVGAEAVYAHREVSHDEVKGEDK 110

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQA--DLR 175
           ++  ++   +  K F  S L     +     QM   Y  FR+ +    ++  ++A   L+
Sbjct: 111 IDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLK 170

Query: 176 SLPVPAIRLTGPVTPSNIPRFFD 198
            LP       G V P  IP   D
Sbjct: 171 GLPA-----RGDVEPGEIPSLVD 188


>gi|312899443|ref|ZP_07758773.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0470]
 gi|311293313|gb|EFQ71869.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0470]
          Length = 220

 Score = 41.2 bits (95), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
          ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4  VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70 KSLSQKG 76
          + + Q+ 
Sbjct: 61 ERIDQEA 67


>gi|302847739|ref|XP_002955403.1| hypothetical protein VOLCADRAFT_119073 [Volvox carteri f.
           nagariensis]
 gi|300259245|gb|EFJ43474.1| hypothetical protein VOLCADRAFT_119073 [Volvox carteri f.
           nagariensis]
          Length = 128

 Score = 40.8 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP 45
           T   S+ L WLR DLR  DN+AL  AC  +DA V+ VF   P
Sbjct: 65  TQVKSLGLWWLRRDLRTADNEALTGACRQADA-VLPVFCFDP 105


>gi|148239607|ref|YP_001224994.1| deoxyribodipyrimidine photolyase-like protein protein
           [Synechococcus sp. WH 7803]
 gi|147848146|emb|CAK23697.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           WH 7803]
          Length = 495

 Score = 40.8 bits (94), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 147/383 (38%), Gaps = 77/383 (20%)

Query: 25  ALYAACHNSDAKVI---AVFIATPEQW-----RQHGISARQSHFIYASLLQVQKSLSQKG 76
           A + A H   A  +    +   T  QW     RQ  +  R S   YA  L+ Q       
Sbjct: 13  ADHPALHKGRAVALIEDPLLFGTDPQWPIQVHRQRLLLHRASMTAYAETLRAQGY----- 67

Query: 77  IVF--QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134
            VF  ++HQ SN ++ ++ L +           +   Y  + V  D LLEKRL+ + + +
Sbjct: 68  TVFYRRHHQASNTEEHLQALRASG---------FVSFYLADPV--DDLLEKRLR-QFVAR 115

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP---- 190
           S  D  +L    +L  A  + + +   RK  +    +   R + +      GP+      
Sbjct: 116 SGGDLRILDSPMLLTPASMVEEHFAGGRKPFMAKFYEHQRRRMGLLLDDNGGPLGGQWSF 175

Query: 191 -----SNIPRFFDYPFQ-------AIDPM-------------------FPIGEQNALHIL 219
                  +P+    P +        ID                     +PI  ++A   L
Sbjct: 176 DADNRKKLPKGISVPSEPCHHGDAEIDQARRELETETLPFIGNWDFFSYPIRHEDADRWL 235

Query: 220 RKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           + F  ++   +    D  + Q      S L+P L++G+L+P+Q  +R  E   D  I P 
Sbjct: 236 QIFLDQRFRDFGAYEDAISTQHRVMWHSVLTPMLNVGLLTPQQVIDRTLERAADGDI-PL 294

Query: 276 SGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGF 333
           +    ++ +++ WREF   +M     V M K          W  +D  +  A+  G TG 
Sbjct: 295 NSLEGFIRQIVGWREFMA-VMYRRHGVAMRKSNF-------WEFEDRPIPDAFYTGTTGL 346

Query: 334 PIIDAAMRQLNTIGWMHNRLRMI 356
           P +D A+      G+ H+  R++
Sbjct: 347 PPVDDAIHHALAHGYCHHIERLM 369


>gi|242278435|ref|YP_002990564.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM
           2638]
 gi|242121329|gb|ACS79025.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM
           2638]
          Length = 445

 Score = 40.8 bits (94), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 15/153 (9%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           GE  A   L +F    +  Y E+R+ P  + TS+LS Y   G L+P++         +++
Sbjct: 217 GESAAHAALDEFVTYGLGAYAEKRNDPNAEATSRLSAYYHFGQLAPQRA-------ALEV 269

Query: 271 LIKPKSGAF-SWLNELIW-REFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HL 322
             +P   +  S+L ELI  RE   +     P+         W +K   E + D     + 
Sbjct: 270 AARPTGESVDSYLEELIIRRELSDNFCLHTPNYDSLDAAPEWAQKTLSEHSADRRAYLYS 329

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            + ++Q  T   + +AA  Q+   G+MH  +RM
Sbjct: 330 YEDFEQARTHSALWNAAQSQMVHSGFMHGYMRM 362


>gi|187234364|gb|ACD01434.1| DNA photolyase II [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|195976055|gb|ACG63559.1| DNA photolyase II [Plusia acuta nucleopolyhedrovirus]
          Length = 243

 Score = 40.8 bits (94), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 20/168 (11%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
           P   I+P    G  +AL++L +F +  +  Y   R+ P ++  S +SP+   G +S ++ 
Sbjct: 78  PVDWIEP----GYISALNVLARFIRCNLLKYKMSRNNPVLKTQSNMSPFYHFGQISVQRV 133

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA----FYPS---VCMGKPFIPWTE 312
              L    ++   K  SG  S +N+ I   F R  +A    FY S     +G P      
Sbjct: 134 MLHLNSLKIN---KNDSGIDSNINDYIEECFVRRELADNFCFYNSNYDTFLGAPNWAKET 190

Query: 313 KIEWNKDSH-----LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            +    DS      LLQ ++   T   + +AA RQL   G +H  LRM
Sbjct: 191 LVIHKSDSRQYIYSLLQ-FEHNQTHDELWNAAQRQLRNEGKIHGYLRM 237


>gi|269839711|ref|YP_003324403.1| deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791441|gb|ACZ43581.1| Deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 449

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 33/191 (17%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
           P   I    P GE+ A   L+KF  EK+ YY   R+       S LSP+L +G +S    
Sbjct: 188 PACGIRIAHPPGEKAARRHLQKFIDEKLEYYALLRNDVGRDFQSDLSPWLHLGHISSL-- 245

Query: 260 WNRLKEEFVDLLIKP--------------KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
             R+  + ++ + +P              +  A+  +N L+     R  ++   + C+  
Sbjct: 246 --RVALQVIEAVGRPPLLLERAKLAEHSGQPSAYDGMNALLEEMIVRKELS--DNFCLHN 301

Query: 306 PFIPWTEKI-EWNKD------------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           P     +   EW +             ++ LQ W++  T     +AA  QL  +G +H  
Sbjct: 302 PHYKSLQGAPEWGRQTLEAHREDPREFTYSLQEWEEARTHDRAWNAAQTQLRRVGKIHGY 361

Query: 353 LRMITASFLVK 363
           +RM  A  +++
Sbjct: 362 MRMYWAKKMLE 372


>gi|116750550|ref|YP_847237.1| DNA photolyase, FAD-binding [Syntrophobacter fumaroxidans MPOB]
 gi|116699614|gb|ABK18802.1| Deoxyribodipyrimidine photo-lyase type II [Syntrophobacter
           fumaroxidans MPOB]
          Length = 468

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 64/169 (37%), Gaps = 19/169 (11%)

Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
           D    ++   +  G   A  +   F ++ +  Y E R+ P     S +S YL  G +SP 
Sbjct: 212 DRSVPSVTRYYRGGTSRAKELFETFLRDDIGRYTEDRNQPHAGAVSHMSMYLHFGQISPV 271

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE-----FYRHLMAFYPSVCMGKPFIPWTE 312
               RL E  V      +  AF  L +L+ R      F  H   +    C+ +    W  
Sbjct: 272 YLALRLGE--VGRERDTQKAAF--LEQLLVRRELALNFVHHTRNYDSYECLPR----WAR 323

Query: 313 KI--EWNKDSHLLQAWKQGYTGFPIID----AAMRQLNTIGWMHNRLRM 355
           +      KD    +  +Q        D    AAM ++   G+MHN +RM
Sbjct: 324 ETLARHRKDRREFRYGRQELENLRTHDEYWNAAMTEMKFTGYMHNHMRM 372


>gi|145353298|ref|XP_001420955.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357465|ref|XP_001422939.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581191|gb|ABO99248.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583183|gb|ABP01298.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 477

 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 41/170 (24%)

Query: 211 GEQNALHIL-----RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ-CWNR-- 262
           GE+ AL  L       F  +++  Y E+    + +  S+LSPYL+ G LSPR+  W    
Sbjct: 232 GERAALAALLDPNVDSFLPQRLTLYGERNKPTSPRAVSRLSPYLNHGQLSPRRAAWEAAQ 291

Query: 263 ----LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI-EWN 317
               + +E +D          S+L ELI R   R L   Y   C+  P+    +   +W 
Sbjct: 292 LRGIVDDEAID----------SYLEELIVR---RELSDNY---CLFNPYYDSLQGASQWA 335

Query: 318 KDSHLLQA------------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +DS  L A             ++G T   + +AA ++L  +G MH  +RM
Sbjct: 336 QDSLSLHARDVREYVYDYKTLERGNTHDELWNAAQKELYHLGRMHGFMRM 385


>gi|310658527|ref|YP_003936248.1| deoxyribodipyrimidine photo-lyase [Clostridium sticklandii DSM 519]
 gi|308825305|emb|CBH21343.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
           (Photoreactivating enzyme) [Clostridium sticklandii]
          Length = 447

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 26/165 (15%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           + ++  G   A   L+ F + K  YY E ++ P +  +S LSPYL  G +SP   +  LK
Sbjct: 213 ESIYKGGSVEAEKYLKDFIENKAQYYSELKNHPGMNYSSNLSPYLHFGQISP--LYIALK 270

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS-- 320
              +   IK K     +L ELI R   R L   Y  +   K +    EKI   W  DS  
Sbjct: 271 --IIKSDIKSKK---DFLEELITR---RELAINY--IYYNKNYDSDIEKILPSWAYDSLI 320

Query: 321 ----------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                     + L+  +   T     + A +++   G MH  +RM
Sbjct: 321 SHQNDLKDYLYSLEELENAKTHDEFWNKAQKEMVITGKMHGYMRM 365


>gi|9633763|ref|NP_051841.1| m127L [Myxoma virus]
 gi|6523982|gb|AAF15015.1|AF170726_131 m127L [Myxoma virus]
 gi|170664593|gb|ACB28750.1| m127L [Myxoma virus]
 gi|170664766|gb|ACB28922.1| m127L [recombinant virus 6918VP60-T2]
 gi|301134653|gb|ADK63767.1| m127L [Myxoma virus]
          Length = 445

 Score = 40.0 bits (92), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 26/207 (12%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G +  L  LR F K  + YY   ++ P  +  S LSP+L  G LS ++    + +  V  
Sbjct: 212 GTKEGLKTLRAFLKHTLRYYYAFKNDPTARACSGLSPWLHYGHLSAQRV---VLDTVVYA 268

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAF----YPSVCMGKPFIPWTEKIEWNKDS--HLLQ 324
            I P S A ++L+E++ R        +    Y S+    P+   T   E  +D+  +L  
Sbjct: 269 SIYPASVA-AFLDEIVVRRELSDNFCYYNKRYDSITSTHPWALRTLD-EHRRDTRPYLYD 326

Query: 325 AW--KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL-- 380
            +  +   T  P+ +AA  Q+   G MH  LRM  A       +++W    E  +S    
Sbjct: 327 TYSLEHARTHDPLWNAAQLQMVREGKMHGYLRMYWAK-----KILEWSETPESALSVCIY 381

Query: 381 ------LDGDLASNNGGWQWAASTGND 401
                 LDG   +   G  WA +  +D
Sbjct: 382 LNDKYELDGTDPNGYVGCLWAVAGLHD 408


>gi|87124470|ref|ZP_01080319.1| photolyase protein family protein [Synechococcus sp. RS9917]
 gi|86168042|gb|EAQ69300.1| photolyase protein family protein [Synechococcus sp. RS9917]
          Length = 482

 Score = 40.0 bits (92), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 19/158 (12%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNR 262
           + PI    A   L  F  +++  +    D  +    +   S L+P L+IG+L+P+Q  +R
Sbjct: 210 LVPIDHSGAERWLDAFLAQRLQQFGAYEDAISREHHVLWHSVLTPMLNIGLLTPQQVLDR 269

Query: 263 L--KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-K 318
              + E  D+   P +    ++ ++I WREF   +   +        F        W  +
Sbjct: 270 TLARAEAGDV---PHNSLEGFVRQIIGWREFMALMYRHHGVTLRNGNF--------WGLE 318

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           D  + +A+  G TG P IDA ++++   G+ H+  R++
Sbjct: 319 DRPIPEAFSTGDTGLPPIDAVIQRVRRSGYCHHIERLM 356


>gi|193652710|ref|XP_001949151.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon
           pisum]
          Length = 506

 Score = 40.0 bits (92), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 15/159 (9%)

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW---NR 262
           P    G +  +  L +F K+++  Y   R+ P   G S+LSP+L  G +S ++C    ++
Sbjct: 262 PGLKAGFKAGMSELEQFLKKRLPKYSTDRNNPVKDGLSKLSPWLHFGQISAQRCILEVSK 321

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKDS 320
           L +++ D +   +  A      ++ RE   +   + P      G P    T   E  KD 
Sbjct: 322 LSKQYPDSVAAYREEA------IVRRELSDNFCFYNPKYDKIEGAPNWAQTSLNEHRKDK 375

Query: 321 HLL----QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            +     +  +   T   + ++A  QL   G MH  LRM
Sbjct: 376 RMFVYTREELESSRTHDDLWNSAQIQLVKEGKMHGFLRM 414


>gi|226495065|ref|NP_001144536.1| hypothetical protein LOC100277533 [Zea mays]
 gi|195643560|gb|ACG41248.1| hypothetical protein [Zea mays]
          Length = 131

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL AA       V+ +FI  P  + Q+        ++  SL  + K
Sbjct: 8   VVWFRRDLRIQDNPALAAAAKG--GSVLPIFIWCPSDYGQYYPGRCSRWWLKQSLAHLGK 65

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           SL   G  +V    + S     +E + S       T++ YNR Y
Sbjct: 66  SLELLGCPLVLIRAEDSTLAALLECVRSI----SATRVVYNRLY 105


>gi|325115796|emb|CBZ51351.1| hypothetical protein NCLIV_044160 [Neospora caninum Liverpool]
          Length = 636

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 18/175 (10%)

Query: 205 DPMFPI-----GEQNALHILRKFCK-EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258
           DP  P+     G + AL +L+ F   + +  Y + R+ P     S LSPY+  G ++ ++
Sbjct: 285 DPPEPLDSWKPGTKAALRLLQSFATPQNIAKYGKARNDPLADCQSDLSPYIHFGHIAVQR 344

Query: 259 CW---NRLKEEFVDLLIKPKSGAFSWLNELIWR-EFYRHLMAFYPSVCMGKPFIPWTEKI 314
           C    ++LK+   D  +    G  ++++E++ R +   + + F P     K    W ++ 
Sbjct: 345 CLMEVSKLKDTTGDRAV--HEGVRAFIDEVVVRSQLSDNFVFFNPHYDDIKGAPDWAKQT 402

Query: 315 --EWNKDSHLLQ----AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             +  KD    Q    A ++G T   + +AA  QL   G MH  LRM  A  L++
Sbjct: 403 LEKHAKDKREPQYEFTALEEGKTYDSLWNAAQLQLVRDGKMHGYLRMYWAKKLLE 457


>gi|32475397|ref|NP_868391.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
 gi|32445938|emb|CAD78669.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
          Length = 507

 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 21/169 (12%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE-- 266
           P G   A    ++F  +K+  Y + R+ P    T+ LSP+L  G +S  +  + + E   
Sbjct: 252 PGGTVEATRRWQEFLNKKLSRYNDDRNHPDEHATTGLSPHLHFGHISAHEMVSSILEHEG 311

Query: 267 -FVDLLIKPKSGAFSWLNE-----------LIWREFYRHLMAFYPSVCMGKPFIP-WTEK 313
              D   KP     S+ N            L WRE   +     P        +P W +K
Sbjct: 312 WSADQTSKPNGKNHSFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQK 371

Query: 314 I--EWNKDS--HL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
              E   D   HL  L  ++   T   I +AA R+L   G MHN +RM+
Sbjct: 372 TLNETRDDERPHLYTLAEFENAETHDEIWNAAQRELVETGEMHNYMRML 420


>gi|255076989|ref|XP_002502150.1| predicted protein [Micromonas sp. RCC299]
 gi|226517415|gb|ACO63408.1| predicted protein [Micromonas sp. RCC299]
          Length = 645

 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 20/158 (12%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           GE+ AL  L +F + K+  Y   R+ P+++  S LSP++  G +S     +R + +    
Sbjct: 358 GEREALRKLDRFLESKLTNYASSRNDPSLRLQSHLSPHIHYGQISVVYVAHRAR-KVAAA 416

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI-EWNKDS--------- 320
             + +     +L+EL+ R   R L   +   C+  P     E + EW + +         
Sbjct: 417 RPELRRSVDVFLDELVVR---RELAINF---CLNNPAYDAYEGVPEWARRTLATHATDHR 470

Query: 321 ---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              + L+ +++  T   + +AA R+L   G  HN LRM
Sbjct: 471 SFVYTLEQFERCATHDALWNAAQRELVVSGKQHNYLRM 508


>gi|327342140|gb|AEA50857.1| cry1-1 [Populus tremula]
          Length = 104

 Score = 39.3 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-FIYASLLQVQ 69
           +VW R DLR+ DN AL A        V+AVF+  PE+   H    R S  ++  SL  + 
Sbjct: 8   IVWFRRDLRVEDNPALAAGVRA--GAVVAVFVWAPEE-EGHYYPGRVSRWWLKQSLGHLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
            SL   G      + +   DS+  L         T+L +N  Y
Sbjct: 65  SSLRSLGTSLVTKRST---DSVSTLLEVVKSTGATQLLFNHLY 104


>gi|302547631|ref|ZP_07299973.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302465249|gb|EFL28342.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC
           53653]
          Length = 502

 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           FP   + AL  LR F   ++  +    D       +   SQLS  L++G+L P +C +R 
Sbjct: 221 FPATRREALASLRHFVTHRLPCFGPYEDAMLAADPVMCHSQLSAPLNLGLLHPAECVDRA 280

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHL 294
           +  + D  + P +GA  ++ ++  WRE+  HL
Sbjct: 281 ERAWRDGAV-PLAGAEGFVRQIAGWREYVWHL 311


>gi|260436163|ref|ZP_05790133.1| photolyase protein family protein [Synechococcus sp. WH 8109]
 gi|260414037|gb|EEX07333.1| photolyase protein family protein [Synechococcus sp. WH 8109]
          Length = 498

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 19/157 (12%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRL 263
           +P+   +A   L +F ++++  +    D  + Q      S L+P L+IG+L+P Q  +R 
Sbjct: 227 YPVTHGDAARWLDQFLEQRLRQFGAYEDAISTQHQVMWHSVLTPMLNIGLLTPLQVLDRT 286

Query: 264 KE--EFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
            E  E  D+ +    G   +L ++I WREF   +   +        F        W  D 
Sbjct: 287 LERAEAGDIPLNSLEG---FLRQIIGWREFMAAIYRRHGVEMRNGNF--------WGFDD 335

Query: 321 H-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             +  A+    TG P ID A+R     G+ H+  R++
Sbjct: 336 RPIPSAFYTASTGLPPIDDAIRHALETGYCHHIERLM 372


>gi|325285638|ref|YP_004261428.1| deoxyribodipyrimidine photolyase-like protein [Cellulophaga lytica
           DSM 7489]
 gi|324321092|gb|ADY28557.1| deoxyribodipyrimidine photolyase-related protein [Cellulophaga
           lytica DSM 7489]
          Length = 494

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 16/150 (10%)

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA 296
           +I   S L+P L++G+++P++  ++   ++      P +    ++ ++I WREF R +  
Sbjct: 258 SILNHSVLTPMLNVGLITPKEIIDKAL-DYAKTNNVPINSTEGFVRQIIGWREFIRGMYI 316

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR-M 355
              +      +  +T KI          ++  G TG P ID  +++L   G+ H+  R M
Sbjct: 317 TRGAEERTTNYWKFTRKIP--------ASFYNGTTGIPPIDQTIKKLLQTGYCHHIERLM 368

Query: 356 ITASFLVKDLLVDWRIGEEY--FMSQLLDG 383
           + ++F+   LL ++   E Y  FM   +D 
Sbjct: 369 VLSNFM---LLCEFNPDEVYQWFMELFIDS 395


>gi|40556144|ref|NP_955229.1| CNPV206 putative photolyase [Canarypox virus]
 gi|40233969|gb|AAR83552.1| CNPV206 putative photolyase [Canarypox virus]
          Length = 472

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 79/199 (39%), Gaps = 13/199 (6%)

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
           I  ++   L   PV      GP + S   N    FD     +    P G + A  +L  F
Sbjct: 178 INGMLDTYLTEFPVITKHPYGPFSVSIANNKGVEFDDTVHPVSWAVP-GSKAAFKVLDDF 236

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            K ++  Y    + P  +  S LSP+L  G +S ++    + E      I PKS +    
Sbjct: 237 LKNRLAAYESDHNNPTCEALSNLSPWLHFGHISAQRV---VLETLKYKSIHPKSVSVFLD 293

Query: 283 NELIWREFYRHLMAF---YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPII 336
             +I RE   +   +   Y S+     +   T +   N     + + KQ     T  P+ 
Sbjct: 294 EIIIRRELADNFCYYNKRYDSIESTHSWARETLEAHVNDRRKYIYSLKQLERAETHDPLW 353

Query: 337 DAAMRQLNTIGWMHNRLRM 355
           ++A  Q+  +G MH+ LRM
Sbjct: 354 NSAQIQMVRLGKMHSFLRM 372


>gi|88808546|ref|ZP_01124056.1| photolyase protein family protein [Synechococcus sp. WH 7805]
 gi|88787534|gb|EAR18691.1| photolyase protein family protein [Synechococcus sp. WH 7805]
          Length = 495

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 33/206 (16%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRL 263
           +PI  ++A   L+ F + ++  +    D  + Q      S L+P L+IG+L+P+Q  +R 
Sbjct: 224 YPIRHEDADRWLQTFLEYRLRDFGAYEDAISTQHRVMWHSVLTPMLNIGLLTPQQILDRT 283

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSH 321
            E   D  I P +    ++ +++ WREF         +V   +  +       W  +D  
Sbjct: 284 LERAADGDI-PLNSLEGFIRQIVGWREFM--------AVMYRRHGVAMRNSNFWKFEDRP 334

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHN--RLRMITASFLV------------KDLLV 367
           +  A+    TG P ID A+    + G+ H+  RL ++    L+             +L V
Sbjct: 335 IPDAFYTATTGLPPIDDAIGHALSSGYCHHIERLMLLGNVMLLCGFHPQRVYQWFMELFV 394

Query: 368 ---DWRIGEEYF-MSQLLDGDLASNN 389
              DW +    F MSQ  DG L +  
Sbjct: 395 DAYDWVMVPNVFGMSQFADGGLFTTK 420


>gi|78184690|ref|YP_377125.1| photolyase family protein [Synechococcus sp. CC9902]
 gi|78168984|gb|ABB26081.1| photolyase protein family [Synechococcus sp. CC9902]
          Length = 505

 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 33/202 (16%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRL 263
           +P+  Q A   L +F  ++   +    D  +    +     L+P L+IG+L+PRQ  +R 
Sbjct: 234 YPVNHQQAALWLDQFLDDRFKDFGAYEDAISRYHRVMWHGVLTPMLNIGLLTPRQILDRT 293

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSH 321
            E      I P +    ++ ++I WREF         +V   +  +       W  +D  
Sbjct: 294 LEYSKKNDI-PLNSLEGFIRQIIGWREFM--------AVMYRRHGVEMRNSNFWEFEDRP 344

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK--------------DLLV 367
           +  A+  G TG P ID A++     G+ H+  R++    +++              +L V
Sbjct: 345 IPDAFYTGNTGLPPIDDAIKHALQTGYCHHIERLMLVGNIMQLCGFHPNRVYVWFMELFV 404

Query: 368 ---DW-RIGEEYFMSQLLDGDL 385
              DW  +   Y MSQ  DG +
Sbjct: 405 DAYDWVMVPNVYGMSQFADGGI 426


>gi|312091466|ref|XP_003146989.1| DNA photolyase 1 [Loa loa]
 gi|307757849|gb|EFO17083.1| DNA photolyase 1 [Loa loa]
          Length = 261

 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y ++R+IP  +  S LSPY+  G+L+P    N +K+        PKS   ++L E++ R 
Sbjct: 12  YDKERNIPNGKKQSLLSPYMHFGMLNPITIVNEVKQSKA-----PKSAKDAFLEEMVVRR 66

Query: 290 FYRHLMAFY 298
              H   +Y
Sbjct: 67  ELAHNFVYY 75


>gi|283778509|ref|YP_003369264.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
 gi|283436962|gb|ADB15404.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
          Length = 502

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 22/167 (13%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS----PRQCWNRLKEE 266
           G  +A  +L +F   ++  Y E R+ P     S LSP+L  G +S     R+   R    
Sbjct: 243 GAASAARVLERFLDSRLSRYGE-RNEPDANAASGLSPWLHFGHVSVHDIARRALARESWS 301

Query: 267 FVDLLIKPKSGAFSW----------LNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK-- 313
              L  K    A +W          L+ELI WRE   +  +   +    +    W +K  
Sbjct: 302 HAKLSAKTDGKAGAWWGVSAACEGFLDELITWREIGFNFCSRNDNFDQDESLPTWVQKTL 361

Query: 314 ----IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
               ++   + + L  ++   T   + +AA RQL   G +HN +RM+
Sbjct: 362 DKHAVDPRPNLYTLDQFESSTTHDLLWNAAQRQLVREGRIHNYMRML 408


>gi|302336786|ref|YP_003801992.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301633971|gb|ADK79398.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 453

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 14/131 (10%)

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E+R+ P+ +G S +SPYL  G +S  +   R  E        P  G  ++L ELI R   
Sbjct: 244 EERNDPSKEGLSCMSPYLHYGQISALEIALRASEH-------PGPGCEAFLEELIIRREL 296

Query: 292 RHLMAFYPSVCMGKPFIP-WT----EKIEWNKDSHLLQ--AWKQGYTGFPIIDAAMRQLN 344
                FY         +P W     E  E +K   L      ++  T  P  +AA R+L 
Sbjct: 297 AFNFVFYNRFYDSFEALPRWAREDLEAHEGDKREVLYDDAQLEEAKTHDPYWNAAQRELT 356

Query: 345 TIGWMHNRLRM 355
             G MH  +RM
Sbjct: 357 HKGKMHGYMRM 367


>gi|156095570|ref|XP_001613820.1| deoxyribodipyrimidine photolyase [Plasmodium vivax SaI-1]
 gi|148802694|gb|EDL44093.1| deoxyribodipyrimidine photolyase, putative [Plasmodium vivax]
          Length = 973

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL-KEEFVDL 270
           E+ A  +L  FC++ +  Y  +R+ P     + L PY+++GV+S ++C   + K  + + 
Sbjct: 693 EKKAQELLSHFCRQVLDKYNVKRNDPNSDAATVLLPYVNMGVISAQRCILEVHKHAYSNP 752

Query: 271 LIKPKSGAFSWLNELIWRE 289
            I   SG  S+ ++ I R+
Sbjct: 753 SINAVSGKESFTDDFIMRK 771


>gi|116070558|ref|ZP_01467827.1| photolyase protein family [Synechococcus sp. BL107]
 gi|116065963|gb|EAU71720.1| photolyase protein family [Synechococcus sp. BL107]
          Length = 495

 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 33/202 (16%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRL 263
           +PI  + A   L +F  ++   +    D  +    +     L+P L+IG+L+PRQ  +R 
Sbjct: 224 YPINHEQAALWLDQFLDDRFKDFGAYEDAISRHHRVMWHGVLTPMLNIGLLTPRQILDR- 282

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSH 321
             E  D    P +    ++ ++I WREF         +V   +  +       W  +D  
Sbjct: 283 TLECADKNNIPLNSLEGFIRQIIGWREFM--------AVMYRRHGVEMRNGNFWQFEDRP 334

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK--------------DLLV 367
           +  A+  G TG P ID A++     G+ H+  R++    +++              +L V
Sbjct: 335 IPDAFYTGTTGLPPIDDAIKHALQTGYCHHIERLMLLGNMMQLCGFHPNRVYVWFMELFV 394

Query: 368 ---DW-RIGEEYFMSQLLDGDL 385
              DW  +   Y MSQ  DG +
Sbjct: 395 DAYDWVMVPNVYGMSQFADGGI 416


>gi|33330687|gb|AAQ10672.1| type II CPD photolyase [Stellaria longipes]
          Length = 499

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 28/163 (17%)

Query: 211 GEQNALHILRK----FCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCW----- 260
           GE  AL +L      F  +++  Y   R+IP   +  S LSPYL  G +S ++C      
Sbjct: 233 GETAALEVLMGEKDGFLTKRLKKYGTDRNIPLKPRALSGLSPYLHFGQISAQRCALEARQ 292

Query: 261 -NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI---- 314
             +L  E VD          ++L ELI  RE   +   + P     K    W  K     
Sbjct: 293 VRKLSPESVD----------TFLEELIVRRELADNFCYYQPHYDSIKGAWDWARKTLMDH 342

Query: 315 EWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +K  HL   +  ++  T  P+ +A+  ++ T G MH  +RM
Sbjct: 343 ASDKREHLYTREQLEKAQTADPLWNASQMEMVTFGKMHGFMRM 385


>gi|195154062|ref|XP_002017941.1| GL17032 [Drosophila persimilis]
 gi|194113737|gb|EDW35780.1| GL17032 [Drosophila persimilis]
          Length = 540

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 11/160 (6%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G + A   L +FC  ++  + ++R+ P +   S LSP+L  G +S ++C   ++      
Sbjct: 302 GYKAACLQLYEFCSRRLGKFNDKRNDPTVDALSGLSPWLHFGQISAQRCVLEVQR----Y 357

Query: 271 LIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWT-EKIEWNKDS-----HLL 323
             + K+ A ++  E ++ RE   +   +  +    K   PW  + +E ++       + L
Sbjct: 358 RSQHKASADAYCEEAIVRRELADNFCYYNENYDSLKGLSPWAYQSLEAHRKDKRDPCYTL 417

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +  +Q  T   + ++A  QL   G MH  LRM  A  +++
Sbjct: 418 EELEQSLTYDDLWNSAQLQLVREGKMHGFLRMYWAKKILE 457


>gi|9964339|ref|NP_064807.1| putative CPD photolyase [Amsacta moorei entomopoxvirus 'L']
 gi|9944548|gb|AAG02731.1|AF250284_25 AMV025 [Amsacta moorei entomopoxvirus 'L']
          Length = 453

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC---WNRLKE 265
           G  N ++ +  F K K+  Y ++++ P  + TS LSP+L  G++S ++C    N+LK+
Sbjct: 215 GYTNGINRMNNFFKNKINTYKDKKNNPNYENTSILSPWLHCGMISAQRCVLEANKLKK 272


>gi|327538009|gb|EGF24703.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
          Length = 479

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 21/169 (12%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE-- 266
           P G   A    ++F  +K+  Y + R+ P    T+ LSP+L  G +S  +  + L +   
Sbjct: 224 PGGTAEASRRWQEFLNKKLSRYNDDRNHPDEHATTGLSPHLHFGHISAHEMVSSLLDHEG 283

Query: 267 -FVDLLIKPKS----------GAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIP-WTEK 313
              D   KP             A + L++L+ WRE   +     P        +P W +K
Sbjct: 284 WSADQTSKPNGKNHGFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQK 343

Query: 314 I--EWNKDS--HL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
              E   D   HL  L  ++   T   I +AA R+L   G MHN +RM+
Sbjct: 344 TLNETRDDERPHLYTLAEFENAETHDEIWNAAQRELVETGEMHNYMRML 392


>gi|198458346|ref|XP_001361001.2| GA10839 [Drosophila pseudoobscura pseudoobscura]
 gi|198136308|gb|EAL25577.3| GA10839 [Drosophila pseudoobscura pseudoobscura]
          Length = 540

 Score = 38.1 bits (87), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 11/160 (6%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G + A   L +FC  ++  + ++R+ P +   S LSP+L  G +S ++C   ++      
Sbjct: 302 GYKAACLQLYEFCSRRLGKFNDKRNDPTVDALSGLSPWLHFGQISAQRCVLEVQR----Y 357

Query: 271 LIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWT-EKIEWNKDS-----HLL 323
             + K+ A ++  E ++ RE   +   +  +    K   PW  + +E ++       + L
Sbjct: 358 RSQHKASADAYCEEAIVRRELADNFCYYNENYDSLKGLSPWAYQSLEAHRKDKRDPCYTL 417

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +  +Q  T   + ++A  QL   G MH  LRM  A  +++
Sbjct: 418 EELEQSLTYDDLWNSAQLQLVREGKMHGFLRMYWAKKILE 457


>gi|195026713|ref|XP_001986318.1| GH21292 [Drosophila grimshawi]
 gi|193902318|gb|EDW01185.1| GH21292 [Drosophila grimshawi]
          Length = 530

 Score = 38.1 bits (87), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 9/143 (6%)

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
           L +FC  ++ Y+ E+R+ P     S LSP+L  G +S ++C   L+ +    + K  + A
Sbjct: 299 LYEFCTRRLRYFDEKRNDPTADALSGLSPWLHFGQISAQRC--ALEVQRYTSMHKASADA 356

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT------EKIEWNKDSHLLQAWKQGYTG 332
           F     ++ RE   +   +       K    W        + +     + L+  +Q  T 
Sbjct: 357 FC-EEAIVRRELADNFCYYNEHYDSLKGLHDWAYQTLQEHRTDERNPCYSLEELEQSRTY 415

Query: 333 FPIIDAAMRQLNTIGWMHNRLRM 355
             + ++A  QL   G MH  LRM
Sbjct: 416 DDLWNSAQLQLVKEGKMHGFLRM 438


>gi|262373183|ref|ZP_06066462.1| photolyase [Acinetobacter junii SH205]
 gi|262313208|gb|EEY94293.1| photolyase [Acinetobacter junii SH205]
          Length = 509

 Score = 37.7 bits (86), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 12/99 (12%)

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGT-----SQLSPYLSIGVLSPRQCWNRLKEEF 267
           Q AL  L+ F   ++ ++ + +D   + G      S LSPYL+ G+LSP++  +  ++ +
Sbjct: 232 QQALEALQYFIDYQLIHFGQYQD-AMVSGKDYLFHSLLSPYLNCGLLSPKEVCDAAQQAY 290

Query: 268 VDLLIKPKSGAFSWLNELI-WREFYRHL----MAFYPSV 301
            D  + P + A  ++ +++ WREF R +    M  YP +
Sbjct: 291 FDHHV-PLNAAEGFIRQILGWREFIRGIYWLKMPTYPDL 328


>gi|24215349|ref|NP_712830.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45657217|ref|YP_001303.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196458|gb|AAN49848.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45600455|gb|AAS69940.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 516

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 102/235 (43%), Gaps = 36/235 (15%)

Query: 191 SNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRD---IPAIQGTSQL 245
           S I +  ++ FQ I P+     G +  + +L+KF K  +  Y E R     P    +S L
Sbjct: 222 SEICKKCNFNFQNIPPVPGKKGGREEGIKLLQKFLKRGLSGYAELRSNPKPPEESYSSFL 281

Query: 246 SPYLSIGVLSPRQC------WNRLKEEFVDLLIKP-----KSGAF-------SWLNELI- 286
           SPY+  G +S  +       WN L   +   +I P     K G F       S+L+ELI 
Sbjct: 282 SPYIHFGHISQEEIVSEVLNWN-LDGSWTPGVIIPENKNRKEGYFHPDPNVNSFLDELIT 340

Query: 287 WREFYRHLMAFYPSVCMGKPFIP-WTEK-IEWNKDS-----HLLQAWKQGYTGFPIIDAA 339
           WR+    +    PS       +P W +K ++++K+      +  +  +   T   I +AA
Sbjct: 341 WRDVGFLMFWKKPSFRKDLSILPDWIQKNLDFHKNDVRPYIYTKEQLENSKTHDVIWNAA 400

Query: 340 MRQLNTIGWMHNRLRMITASFLVK---DLLVDWRIGEEYFMSQLLDG-DLASNNG 390
            ++L   G M N LRM+    +++   D    + I EE+      DG D  S NG
Sbjct: 401 QKELVLSGCMQNYLRMLWGKKVIEWSPDYQTAFEILEEFNNKYAYDGRDPNSYNG 455


>gi|168053729|ref|XP_001779287.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
           patens]
 gi|162669299|gb|EDQ55889.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
           patens]
          Length = 435

 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-----HFIYA 63
             +VW RNDLR+ DN+AL +A  +S   ++ V+   P  +    +   ++      F++ 
Sbjct: 55  ASIVWFRNDLRLHDNEALVSASRDS-LSILPVYCFDPRDYGNSSLGIDKNGPYRVKFLFE 113

Query: 64  SLLQVQKSLSQKG 76
            +  ++ SL ++G
Sbjct: 114 CVANLRSSLRERG 126


>gi|241958274|ref|XP_002421856.1| conserved hypothetical protein [Candida dubliniensis CD36]
 gi|223645201|emb|CAX39800.1| conserved hypothetical protein [Candida dubliniensis CD36]
          Length = 1910

 Score = 37.7 bits (86), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 71  SLSQKGIVFQYH-QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           S+S  GI+     +  + DD I+W+DS  L+ R  +L  +++ E+NE+  D+L+ K+ Q
Sbjct: 78  SISNTGILSNTKFKAKDADDVIDWIDS--LKSRYEQLIIHQKNELNEITNDELMRKQQQ 134


>gi|217074548|gb|ACJ85634.1| unknown [Medicago truncatula]
          Length = 235

 Score = 37.7 bits (86), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           +VW RNDLR+ DN+AL  A +N    V+ V+   P  + +           ++ F+  S+
Sbjct: 121 IVWFRNDLRVHDNEALNTA-NNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIESI 179

Query: 66  LQVQKSLSQKG 76
             ++K+L  +G
Sbjct: 180 SDLRKNLKARG 190


>gi|218506351|ref|ZP_03504229.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli Brasil
          5]
          Length = 57

 Score = 37.4 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE 46
          ++W R DLR+ DNKAL AA H S   +I ++I  PE
Sbjct: 10 ILWFRKDLRLDDNKALNAA-HFSGRPIICLYIREPE 44


>gi|297521221|ref|ZP_06939607.1| deoxyribodipyrimidine photolyase [Escherichia coli OP50]
          Length = 28

 Score = 37.4 bits (85), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 18/27 (66%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNS 33
          M  HLVW R DLR+ DN AL  AC +S
Sbjct: 1  MITHLVWFRQDLRLHDNLALAGACRHS 27


>gi|320102273|ref|YP_004177864.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
 gi|319749555|gb|ADV61315.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
          Length = 486

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 14/186 (7%)

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           P +P G + A   L++F  +++  Y + R+ P    TS+LS +L  G +SP      +++
Sbjct: 233 PNYPGGTREAERRLQRFVAQRLARYGKDRNEPIPYMTSELSAHLHFGHISPLTIALAVQK 292

Query: 266 EFVDLLIK--PKSGAFSWLNELI-WREFYRHLMAFYPS--VCMGKPFIPWTEKIEWNKDS 320
           E  +  +    K+   S+L E+I  RE   + +A  P      G P        +   D 
Sbjct: 293 EAEEAGVAAETKASVESYLEEMIVRRELAINFVARNPKYDSLAGCPDWARATLAKHANDP 352

Query: 321 ----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
               +     ++  T  P+ +AA +++   G MHN LRM    +  K +L +W    E  
Sbjct: 353 RPKLYTATQLERAETHDPLWNAAQKEMTLTGRMHNYLRM----YWAKKIL-EWSPDPETA 407

Query: 377 MSQLLD 382
            +  LD
Sbjct: 408 FAVALD 413


>gi|183221779|ref|YP_001839775.1| deoxyribodipyrimidine photo-lyase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167780201|gb|ABZ98499.1| Deoxyribodipyrimidine photolyase (DNA photolyase; Photoreactivating
           enzyme) [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 496

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 39/213 (18%)

Query: 183 RLTGPVTPS---NIPRFFD-----YPFQAI-DPMFPI--GEQNALHILRKFCKEKVYYYV 231
           +L G   P     +P+  D      PFQ I  P+  +  G   AL +L  F K K+  Y+
Sbjct: 191 KLNGKTNPPERIGLPKSIDGILKLIPFQNIVSPVKGVKGGRNEALRLLNDFLKHKLDLYL 250

Query: 232 EQR---DIPAIQGTSQLSPYLSIGVL------------SPRQCWN--RLKEEF---VDLL 271
            +R   + P +  TS LSPYL  G +            S +  WN  R+  E     +  
Sbjct: 251 TKRSEPNRPELTATSGLSPYLHFGWIGLDEIFVAVLKHSAKGKWNPERMSHEKPGDREHF 310

Query: 272 IKPKSGAFSWLNELI-WREF-YRHLMAFYPSVCMGKPFIPWTE-KIEWNKDSH-----LL 323
             P   A  +L+ELI WR+  Y       P          W +   + +++ H      L
Sbjct: 311 YSPSVSANHFLDELITWRDIGYLFFWKDKPKQINLSHLPDWVKTNFQKHQNDHREYVYTL 370

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           + ++   T   + +AA  +L   G +HN +RM+
Sbjct: 371 EQFESAKTHDELWNAAQTELVKTGKIHNYMRML 403


>gi|309389065|gb|ADO76945.1| DNA photolyase FAD-binding protein [Halanaerobium praevalens DSM
           2228]
          Length = 454

 Score = 37.0 bits (84), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 17/163 (10%)

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
           Q +   F  G + A   L  F K K+  Y E+R+IP +   S LSPYL  G ++      
Sbjct: 214 QDLSDHFRGGYKAAKLKLNDFLKNKLKDYEEKRNIPHLNFQSDLSPYLHFGQIAA----- 268

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK---PFIPWTEK--IEW 316
              +E     +  +    S+L ELI R        +Y     G        W  +  +E 
Sbjct: 269 ---QEIALAALNSEYDEKSFLEELIVRRELAFNFVYYNQNYDGSLKDILYDWAYQSLMEH 325

Query: 317 NKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             D     +  Q  +   T     +AA +++   G MHN +RM
Sbjct: 326 QADEREYLYTYQELENAKTHDKYWNAAQKEMLLTGKMHNYMRM 368


>gi|189911853|ref|YP_001963408.1| deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776529|gb|ABZ94830.1| Deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
          Length = 523

 Score = 37.0 bits (84), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 39/213 (18%)

Query: 183 RLTGPVTPS---NIPRFFD-----YPFQAI-DPMFPI--GEQNALHILRKFCKEKVYYYV 231
           +L G   P     +P+  D      PFQ I  P+  +  G   AL +L  F K K+  Y+
Sbjct: 218 KLNGKTNPPERIGLPKSIDGILKLIPFQNIVSPVKGVKGGRNEALRLLNDFLKHKLDLYL 277

Query: 232 EQR---DIPAIQGTSQLSPYLSIGVL------------SPRQCWN--RLKEEF---VDLL 271
            +R   + P +  TS LSPYL  G +            S +  WN  R+  E     +  
Sbjct: 278 TKRSEPNRPELTATSGLSPYLHFGWIGLDEIFVAVLKHSAKGKWNPERMSHEKPGDREHF 337

Query: 272 IKPKSGAFSWLNELI-WREF-YRHLMAFYPSVCMGKPFIPWTE-KIEWNKDSH-----LL 323
             P   A  +L+ELI WR+  Y       P          W +   + +++ H      L
Sbjct: 338 YSPSVSANHFLDELITWRDIGYLFFWKDKPKQINLSHLPDWVKTNFQKHQNDHREYVYTL 397

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           + ++   T   + +AA  +L   G +HN +RM+
Sbjct: 398 EQFESAKTHDELWNAAQTELVKTGKIHNYMRML 430


>gi|157278339|ref|NP_001098271.1| photolyase [Oryzias latipes]
 gi|1401038|dbj|BAA05043.1| photolyase [Oryzias latipes]
          Length = 504

 Score = 37.0 bits (84), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 24/157 (15%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G +  L +L  F   ++  +  QR+ P     SQLSP+L  G LS ++   ++++     
Sbjct: 273 GTEAGLAMLESFIDVRLKLFGTQRNDPNAAALSQLSPWLRFGQLSAQRVALQVRKN---- 328

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---------- 320
              P   AF  + EL+ R        FY      K +   T   EW + +          
Sbjct: 329 -SSPSVPAF--IEELVVRRELTDNFCFY-----NKNYDSVTGAYEWAQKTLKDHAKDKRE 380

Query: 321 --HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +  + +++  T   + +AA  Q+ T G MH  LRM
Sbjct: 381 YLYTREQFEKAQTHDKLWNAAQIQMVTEGKMHGFLRM 417


>gi|224099353|ref|XP_002334490.1| predicted protein [Populus trichocarpa]
 gi|222872649|gb|EEF09780.1| predicted protein [Populus trichocarpa]
          Length = 230

 Score = 37.0 bits (84), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 12/74 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR--------QSHFIY 62
           +VW RNDLR+ DN+ L +A +N    V+ V+   P   R +G S+         +++F+ 
Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDP---RDYGKSSSGFDKTGPYRANFLI 182

Query: 63  ASLLQVQKSLSQKG 76
            S+  ++K+L  +G
Sbjct: 183 ESVSDLRKNLQARG 196


>gi|316975640|gb|EFV59048.1| deoxyribodipyrimidine photolyase [Trichinella spiralis]
          Length = 515

 Score = 37.0 bits (84), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
           G   A+ +L  F  +K+  Y + R+IP + G S LSPY++ G +S
Sbjct: 246 GHSEAVKLLDNFVSKKLPNYDKLRNIPGLDGQSGLSPYINFGHIS 290


>gi|226479206|emb|CAX73098.1| photorepair [Schistosoma japonicum]
          Length = 530

 Score = 36.6 bits (83), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 22/178 (12%)

Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
           D   + +D + P G  + L  L KF  E++  Y + R+ P     S LSP+   G ++P+
Sbjct: 286 DISVKPVDWIIP-GTNSGLTTLHKFIHERLSKYADCRNDPTKNCLSDLSPWFHYGQVAPQ 344

Query: 258 QC------WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           +       W    ++ VD  ++            I RE   +   + P     +    W 
Sbjct: 345 RALIEVKLWRHKYKDSVDAFVE---------EAFIRRELSDNFCYYNPKYDSMEGAWKWA 395

Query: 312 EKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +        +    S+  +      T   + +AA RQL   G +H  LRM  A  +++
Sbjct: 396 QDTLTQHAHDKRNPSYSEETMVSADTKDDLWNAAQRQLVRTGKLHGFLRMYWAKKILE 453


Searching..................................................done


Results from round 2




>gi|254781170|ref|YP_003065583.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040847|gb|ACT57643.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 483

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/483 (100%), Positives = 483/483 (100%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF
Sbjct: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD
Sbjct: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP
Sbjct: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ
Sbjct: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS
Sbjct: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF
Sbjct: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP
Sbjct: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ
Sbjct: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480

Query: 481 SLL 483
           SLL
Sbjct: 481 SLL 483


>gi|315122561|ref|YP_004063050.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495963|gb|ADR52562.1| deoxyribodipyrimidine photolyase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 477

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 363/476 (76%), Positives = 414/476 (86%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSVHLVWLRNDLRITDNKALYAAC N +AKVIAVFIATP+QW QHG+SARQ+ FIYA+LL
Sbjct: 1   MSVHLVWLRNDLRITDNKALYAACKNPNAKVIAVFIATPQQWNQHGMSARQATFIYATLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           QVQ+SLS++GIV QYHQCS+FDD+I+WLD YC +++VT+LFYNRQYEINE RRD+ LE+R
Sbjct: 61  QVQQSLSKRGIVLQYHQCSHFDDAIKWLDVYCQEKKVTELFYNRQYEINEHRRDQELERR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++RVIC+ FDDSVLLPPG I N A +MYK+YTPFRK  IQNL Q+DLRS+P P IR TG
Sbjct: 121 LKNRVICRGFDDSVLLPPGKIFNRACEMYKIYTPFRKEFIQNLTQSDLRSVPAPTIRQTG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           PV  + +P +FDYPFQ +DP+FPIGE NAL ILRKFCKEKV YYVEQRDIPAIQGTS LS
Sbjct: 181 PVILTKVPLYFDYPFQEVDPIFPIGEYNALQILRKFCKEKVQYYVEQRDIPAIQGTSHLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYLSIG LSPRQCWNRL  EF D+LIK  SGAFSWLNELIWREFY HL+ FYPS+C GKP
Sbjct: 241 PYLSIGALSPRQCWNRLNVEFSDVLIKTNSGAFSWLNELIWREFYHHLIVFYPSLCTGKP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+KIEWN D   L+ WKQG TGFP++DAAMRQLNT+GWMHNRLRMITASFLVKDLL
Sbjct: 301 FIQWTDKIEWNNDPRALEVWKQGNTGFPLVDAAMRQLNTMGWMHNRLRMITASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWRIGE+YFMSQLLDG+LASNNGGWQWAASTG+DSVPYFRIFNPT QGKRFDP+G FIR
Sbjct: 361 IDWRIGEKYFMSQLLDGNLASNNGGWQWAASTGHDSVPYFRIFNPTTQGKRFDPKGIFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
            WLPEL NVP QYIH PH+W+D  +    YP PIVDHK+A  HT+++Y  A+KQS+
Sbjct: 421 QWLPELKNVPDQYIHTPHNWIDNKNTIHPYPHPIVDHKQARQHTISKYSIAQKQSI 476


>gi|157369495|ref|YP_001477484.1| deoxyribodipyrimidine photolyase [Serratia proteamaculans 568]
 gi|157321259|gb|ABV40356.1| Deoxyribodipyrimidine photo-lyase [Serratia proteamaculans 568]
          Length = 476

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 305/473 (64%), Positives = 374/473 (79%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRITDNKAL+AAC + DA+V+AVFIATP+QWRQH ++ RQ  FI+A+LL
Sbjct: 1   MTTHLVWLRNDLRITDNKALHAACSDPDARVLAVFIATPQQWRQHEMAPRQVAFIHANLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           QVQ++L+++GI   YHQC +F  +++WL +YC QQ+V +LFYNRQYEINE +RD+ LE+R
Sbjct: 61  QVQQALAERGIPLGYHQCDDFAAAVDWLTAYCAQQQVDRLFYNRQYEINERQRDQRLEQR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  + IC+SFDDS+LLPPGS+   + +MYK+YTPFRKA IQ L ++D++SLP P  R  G
Sbjct: 121 LSGQAICQSFDDSLLLPPGSVQTGSGEMYKIYTPFRKAFIQRLTESDIQSLPAPKPRAGG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  + IP  FDYP    +  FP GE+ AL  LR FC+E+V  Y+EQRD+PAI GTS LS
Sbjct: 181 ALPVTAIPEAFDYPPAEPNEDFPAGEEAALQRLRSFCREQVQDYLEQRDLPAIAGTSSLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IGVLSPRQC+NRL+ E   LL    SGAF WLNELIWREFYRHLM  YP++C  +P
Sbjct: 241 PYLAIGVLSPRQCFNRLRAECPQLLENHDSGAFGWLNELIWREFYRHLMVAYPALCKHRP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ W  +  LLQAW+QG TG+PI+DAAMRQLNT GWMHNRLRMI+ASFLVKDLL
Sbjct: 301 FIEWTDRVRWQDNQELLQAWQQGVTGYPIVDAAMRQLNTTGWMHNRLRMISASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQGTFIR
Sbjct: 361 IDWRAGESYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGTFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WL EL +VP   IH PH W ++    L+YPLPIVDHK+A   TL  + AAK+
Sbjct: 421 KWLSELADVPDNAIHQPHRWAEQQQRVLDYPLPIVDHKQARLETLAAFEAAKR 473


>gi|270263757|ref|ZP_06192026.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
 gi|270042641|gb|EFA15736.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
          Length = 476

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 299/473 (63%), Positives = 366/473 (77%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRITDNKAL+AAC +  A+V+AVFIATP QWRQH ++ RQ+ FI+A+LL
Sbjct: 1   MATHLVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQHEMAPRQAAFIHANLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           QVQ++L+ +GI    HQC +F  +++WL +YC Q+RV  LFYNRQYEINE++RD+  ++R
Sbjct: 61  QVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQRR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  +VIC+SFDDS+LLPPGS+     +MYK+YTPFRKA IQ L ++D+RSLP P  R  G
Sbjct: 121 LSGQVICQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAFIQRLTESDVRSLPAPKRREGG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  S  P  FDYP       FP GE  AL  LR FC+E+V  Y++QRD PAI GTS LS
Sbjct: 181 ALPVSVAPAAFDYPQVEAGADFPAGEDAALKRLRAFCREQVQDYLQQRDFPAIAGTSSLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IGVLSPRQC+NRL+ E   +L    SGAF WLNELIWREFYRHLM  YP++C  +P
Sbjct: 241 PYLAIGVLSPRQCFNRLRAECPQVLENSDSGAFGWLNELIWREFYRHLMVAYPALCRHRP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ W  +  LL AW++G TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKDLL
Sbjct: 301 FIEWTDRVRWRNNDALLLAWQKGATGYPIVDAAMRQLNKTGWMHNRLRMISASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQGTFIR
Sbjct: 361 IDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGTFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP   +H PH W +K   +L+YPLPIVDHK+A   TL  + AAK+
Sbjct: 421 KWLPELADVPDNALHQPHLWAEKQQRTLDYPLPIVDHKQARLETLAAFEAAKR 473


>gi|320539319|ref|ZP_08038988.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia
           symbiotica str. Tucson]
 gi|320030444|gb|EFW12454.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia
           symbiotica str. Tucson]
          Length = 475

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 301/475 (63%), Positives = 365/475 (76%), Gaps = 1/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRITDNKAL+AAC+  DA+V+AVFIATP+QWR+H I+ RQ+  I+ASL 
Sbjct: 1   MTTHLVWLRNDLRITDNKALHAACNEPDARVLAVFIATPQQWRRHDIAPRQAALIHASLK 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q++L QKGI    HQC +F  SI+WL  YC +Q+VT LFYNRQYE+NE RRD+ +E+R
Sbjct: 61  QLQQALEQKGIPLYCHQCDDFAASIDWLTDYCAKQQVTVLFYNRQYELNEWRRDQQVEQR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  RV C+ FDDS+LLPPGS+   + +MYKVYTPFR A I+ L ++D+R LP P  R  G
Sbjct: 121 LAGRVRCQHFDDSLLLPPGSVQTGSGEMYKVYTPFRNAFIRRLTESDVRCLPAPQPR-AG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +   + P  F+Y        FP GEQ AL  LR FC+++V  Y+ QRD+PAI GTS LS
Sbjct: 180 ALPIPDAPPAFEYSHADPGEDFPAGEQAALQRLRAFCRQQVQDYLTQRDLPAIAGTSSLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IG LSPRQC+NRL  E   +L + +SGAF WLNELIWREFYRHLMA YP++C  +P
Sbjct: 240 PYLAIGTLSPRQCFNRLCAEHPSVLEERESGAFGWLNELIWREFYRHLMAAYPALCRHRP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+K+ W  D  LLQAW++G TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKDLL
Sbjct: 300 FIAWTDKVRWRNDESLLQAWQRGKTGYPIVDAAMRQLNNTGWMHNRLRMISASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE YFMSQLLDGDLA+NNGGWQWAASTG D+VPYFRIFNPT Q +RFDPQGTFIR
Sbjct: 360 IDWRVGERYFMSQLLDGDLAANNGGWQWAASTGTDAVPYFRIFNPTSQSERFDPQGTFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP   IH PH W  K  L LNYPLP+VDH++A   TL  + AAK+  
Sbjct: 420 KWLPELADVPDNDIHQPHLWAQKQQLVLNYPLPVVDHRQARLETLAAFEAAKQGG 474


>gi|322833858|ref|YP_004213885.1| Deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602]
 gi|321169059|gb|ADW74758.1| Deoxyribodipyrimidine photo-lyase [Rahnella sp. Y9602]
          Length = 476

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 276/475 (58%), Positives = 347/475 (73%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLRITDN+AL+AAC +  A+VIAVF+ATPEQW+QH ++ RQ+ FIY  L 
Sbjct: 1   MTTHLVWFRNDLRITDNRALHAACEDPQARVIAVFVATPEQWKQHEMAPRQAMFIYQHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+++GI   YHQC +F DS+ WL  +C  ++V  LFYN+QYE NE +RD  LE  
Sbjct: 61  ALQHALAERGIGLHYHQCDDFADSVTWLKDFCKTEKVDALFYNKQYEFNERQRDAALENA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   VIC +FDDS+LLPPGS++    +MYKVYTPFR+A +  L ++D RSLP P  R   
Sbjct: 121 VSESVICHAFDDSLLLPPGSVMTGNNEMYKVYTPFRRAFLSRLTESDSRSLPAPQTRGNA 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               ++    FDYP   I   F IGE+ A + LR FC+E+V  Y+EQRD+PA+ GTS LS
Sbjct: 181 EKVVTHRLMPFDYPLADIGDHFAIGEEAARNRLRSFCREQVQDYLEQRDLPAVDGTSSLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IGVLSPRQC NRL+ E  D+L K   GAF WLNEL+WREFYRHL+  +P +C  +P
Sbjct: 241 PYLAIGVLSPRQCLNRLRAECPDVLEKTDGGAFGWLNELVWREFYRHLIVAWPKLCKHQP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F+ WT+ + W      LQAWK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 301 FVAWTDNVRWRHAPDDLQAWKDGKTGYPIVDAAMRQLNATGWMHNRLRMIVASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           ++WR GE YFMSQLLDGDLA+NNGGWQW ASTG D+ PYFRIFNPT QG+RFD  G FI+
Sbjct: 361 INWREGERYFMSQLLDGDLAANNGGWQWGASTGTDAAPYFRIFNPTTQGERFDKTGCFIK 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            W+PEL +VP + IH PH W +K+   L+YPLP++DH +A   TL  + AAK +S
Sbjct: 421 AWVPELADVPERDIHQPHRWAEKHHRVLDYPLPVIDHAQARKDTLAAFEAAKNRS 475


>gi|209917958|ref|YP_002292042.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11]
 gi|293432976|ref|ZP_06661404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088]
 gi|300823005|ref|ZP_07103140.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7]
 gi|331667072|ref|ZP_08367937.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           TA271]
 gi|331676388|ref|ZP_08377085.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H591]
 gi|209911217|dbj|BAG76291.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11]
 gi|291323795|gb|EFE63217.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088]
 gi|300524546|gb|EFK45615.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7]
 gi|324020349|gb|EGB89568.1| FAD binding domain of DNA photolyase [Escherichia coli MS 117-3]
 gi|331065428|gb|EGI37321.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           TA271]
 gi|331075881|gb|EGI47178.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H591]
          Length = 472

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + PS      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGDYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|293397249|ref|ZP_06641522.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
 gi|291420269|gb|EFE93525.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
          Length = 476

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 287/475 (60%), Positives = 356/475 (74%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLR+TDN+ALYAAC +  A V+AVFIATP+QWRQH ++ARQ+ FI+A+L 
Sbjct: 1   MTTHLVWLRNDLRVTDNQALYAACRDPQATVMAVFIATPQQWRQHHMAARQAAFIHATLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q++L+Q+GI     QC +F  +++WL  +C    V  LFYNRQYE+NE RRD+ LE+R
Sbjct: 61  QLQQALAQRGIPLVTQQCDDFAAAVDWLADFCQASHVDALFYNRQYELNERRRDRQLEQR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V C++FDDS+LLPPGS+L+   +MYK+YTPFR+A +  L ++D+ SLP PA R  G
Sbjct: 121 LNGMVNCQAFDDSLLLPPGSVLSGNGEMYKMYTPFRRAFLARLAESDIASLPAPAQRSCG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                  P  FDYP   +D  FP GE+ AL  LR FC+++V  Y  QRDIPA+ GTS LS
Sbjct: 181 QWQAITPPAPFDYPAAELDDGFPAGEEAALRRLRHFCRQQVQDYHHQRDIPAVDGTSVLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++G LSPRQC NRL+ E  D+L  P  GAF WLNELIWREFYRHL+   P++C  +P
Sbjct: 241 PYLAVGALSPRQCVNRLRAECPDMLANPHGGAFCWLNELIWREFYRHLLVANPALCRHRP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ WN  +    AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 301 FIAWTDRVRWNPAADNFLAWQQGRTGYPIVDAAMRQLNQTGWMHNRLRMIAASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QGKRFDPQG+FIR
Sbjct: 361 IDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGKRFDPQGSFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP   +H PH W +K    L+YPLPIVDH +A   TL  + AAK+ +
Sbjct: 421 KWLPELADVPDNELHQPHRWAEKQQRVLDYPLPIVDHPQARLATLAAFDAAKRGA 475


>gi|331645860|ref|ZP_08346963.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           M605]
 gi|330910459|gb|EGH38969.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86]
 gi|331044612|gb|EGI16739.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           M605]
          Length = 472

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 333/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIDPAPSITL-NYPCQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|238752103|ref|ZP_04613586.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380]
 gi|238709680|gb|EEQ01915.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380]
          Length = 480

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 276/476 (57%), Positives = 344/476 (72%), Gaps = 1/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLRITDN AL+AAC +S A VIAVF+ATP QW +  ++ RQ+ F++ +L 
Sbjct: 1   MATHLVWFRNDLRITDNLALHAACKDSQATVIAVFVATPVQWGKQDMAPRQAAFLWQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q++  L+++ I   YHQC  F DSI WLD +C Q ++  LFYN+QYE NE +RD  L  +
Sbjct: 61  QLRAVLAERAIPLHYHQCDEFKDSINWLDDFCQQHQIDALFYNQQYEWNERQRDDALIAK 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  RVIC SF DS+LLPPGS+L    +MY+V+TPFR+A IQ L+ +D RS+P P  R T 
Sbjct: 121 LAGRVICHSFHDSLLLPPGSVLTGNGKMYQVFTPFRRAFIQRLMMSDYRSVPAPKARQTK 180

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                     FDYP Q++D  +FP GE+ AL  LR FC+E+V  Y +QRD+PA+ GTS L
Sbjct: 181 IAIEPASWGPFDYPQQSVDNQLFPAGEEAALLRLRTFCREQVQDYQQQRDLPAVAGTSCL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++G+LSPRQC NRL+ E  ++  K   GAF WLNELIWREFYRHL+  YP +C  +
Sbjct: 241 SPYLALGILSPRQCVNRLRAECPEVFEKADGGAFIWLNELIWREFYRHLLVAYPRLCQHR 300

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKDL
Sbjct: 301 PFIDWTDAVVWNHSEQHLLAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKDL 360

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI
Sbjct: 361 LINWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKKGIFI 420

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL+ VP   IH P  W  +    L+YP P+VDHK+A   TL  + AAK+  
Sbjct: 421 RRWLPELSAVPDSDIHQPWHWAQQQQHPLDYPPPLVDHKQARLATLAAFDAAKRDG 476


>gi|251790504|ref|YP_003005225.1| deoxyribodipyrimidine photolyase [Dickeya zeae Ech1591]
 gi|247539125|gb|ACT07746.1| Deoxyribodipyrimidine photo-lyase [Dickeya zeae Ech1591]
          Length = 476

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 269/474 (56%), Positives = 344/474 (72%), Gaps = 1/474 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R+DLR+TDN AL+AAC + +A+V AVFIATP+QW  H ++  Q+ F+  +L 
Sbjct: 1   MTTHLVWFRHDLRLTDNLALHAACQDPEARVEAVFIATPQQWASHDMAPCQAAFLLGNLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L +KGI   YHQC +F  S+ WL ++C + +VT+LFYNRQYE NE RRD+ LE  
Sbjct: 61  CLQQALQEKGIPLHYHQCDDFAASVRWLTAFCREHQVTRLFYNRQYEWNERRRDEQLEPA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L     C  FDDS+LLPPGS++  +  MYKV+TPFR A I+ L Q D+ S+P P  R  G
Sbjct: 121 LAGVTDCYGFDDSLLLPPGSVVTGSGDMYKVFTPFRAAFIKRLQQQDVGSVPAPVSRHQG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             T   +   FDYP   +   FP+GE  AL  LR+FC+E+  +Y E+RD+PA   TS+LS
Sbjct: 181 EFTLVPLAP-FDYPQTDVHADFPVGESAALQRLRQFCREQAAFYHERRDLPAQAATSKLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++G+LSPRQC+NRL+ E  D L +P+SGAF+W NEL+WREFYRHL+ F PS+C  +P
Sbjct: 240 PYLALGILSPRQCFNRLRMEHPDWLTRPESGAFTWFNELVWREFYRHLLVFSPSLCKHQP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT K+ W      L AW++G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 300 FIGWTRKVAWRNAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW  GE YFMS+LLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIR
Sbjct: 360 IDWCEGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGEFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PEL  +P + +H PH W  +    ++YP PIVDHK+A   TL  + AAKK 
Sbjct: 420 RWVPELAQIPGKAVHQPHDWAIRQHRRIDYPAPIVDHKQARTRTLTAFEAAKKS 473


>gi|281177846|dbj|BAI54176.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15]
          Length = 472

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 333/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 AIDPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|323947030|gb|EGB43044.1| DNA photolyase [Escherichia coli H120]
          Length = 472

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + PS      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGDYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|307130086|ref|YP_003882102.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Dickeya
           dadantii 3937]
 gi|306527615|gb|ADM97545.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Dickeya
           dadantii 3937]
          Length = 476

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 267/475 (56%), Positives = 347/475 (73%), Gaps = 1/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R+DLR+TDN AL+AAC + DA+V AVFIATP+QW  H ++  Q+ F+  +L 
Sbjct: 1   MTTHLVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHAMAPCQAAFLLGNLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ L +K I   Y QC +F   + WL  +C  ++VT+LFYNRQYE NE +RD+ LE+ 
Sbjct: 61  CLQQELREKSIPLHYRQCDDFAAGVRWLADFCRARQVTRLFYNRQYEWNERQRDQQLEQA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L     C+ FDDS+LLPPGS++  +  MYKV+TPFR A ++ L Q D+ S+P PA R  G
Sbjct: 121 LTDVTECRGFDDSLLLPPGSVVTGSGDMYKVFTPFRAAFLKQLQQRDVGSVPAPAARQQG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +TP+++   FDYP   +   FP GE  AL  LR+FC+E+V +Y EQRD+PA+  TS+LS
Sbjct: 181 DITPASLAP-FDYPQTDVHADFPAGEPAALQRLRQFCREQVMFYHEQRDLPALAATSKLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++GVLSPRQC+NRL+ E  D L + +SGAF+W NEL+WREFYRHL+ F P++C  +P
Sbjct: 240 PYLALGVLSPRQCFNRLRMEHPDWLARSESGAFTWFNELVWREFYRHLLVFSPALCKHQP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT ++ W      L AW++G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 300 FISWTRRVAWRNAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW  GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FIR
Sbjct: 360 IDWCEGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEGEFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            W+PEL  +P + +H PH W  +    ++YPLP+VDHK+A   TL  + AAK  +
Sbjct: 420 RWVPELAQIPGKAVHQPHEWAIRQQRQIDYPLPMVDHKQARTRTLAAFEAAKNGA 474


>gi|320175355|gb|EFW50459.1| Deoxyribodipyrimidine photolyase [Shigella dysenteriae CDC 74-1112]
          Length = 472

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + PS      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|317491170|ref|ZP_07949606.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920717|gb|EFV42040.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 476

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 272/475 (57%), Positives = 340/475 (71%), Gaps = 3/475 (0%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + H+VW RNDLRITDN+AL+AAC +  AKVIAV+IATPEQW+QH ++ RQ+ FI+ +L  
Sbjct: 3   ATHVVWFRNDLRITDNRALHAACQDPQAKVIAVYIATPEQWKQHDMAPRQAAFIHQNLQC 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L+ K I   YHQC++F  S +WL  +C +  VT LFYNRQYE+NE RRD  + + L
Sbjct: 63  LVHALAGKNIPLFYHQCTDFTASAKWLVDFCQKNEVTDLFYNRQYELNERRRDDAVTELL 122

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                  SFDD++LLPPGS++  + +MYKV+TPFR A +Q L  +D+RSLP P  R    
Sbjct: 123 AGVCGIHSFDDALLLPPGSVVTGSGEMYKVFTPFRNAFLQRLTHSDVRSLPAPKTREQAC 182

Query: 188 VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                  + FDY  Q +D  +FP GE+ AL  LR FC+E V  Y +QRDIPA+ GTS LS
Sbjct: 183 EMSE--IKPFDYSQQGLDSVLFPAGEEAALQRLRVFCREHVQDYAQQRDIPAVDGTSVLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++GVLSPRQC NRL  E  D L   +SGAF WLNEL+WREFYRHL+  +P +C  KP
Sbjct: 241 PYLAVGVLSPRQCLNRLLAECPDTLEDGESGAFVWLNELVWREFYRHLLVAHPKLCRHKP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+ + W+ D   L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 301 FIAWTDHVHWSGDIEHLTAWQQGETGYPIVDAAMRQLNHTGWMHNRLRMIVASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           ++WR GE YFMSQL+DGDLA+NNGGWQWAAS+G D+ PYFRIFNPT QG+RFD +G FIR
Sbjct: 361 INWRAGERYFMSQLIDGDLAANNGGWQWAASSGTDAAPYFRIFNPTTQGERFDKKGDFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLPEL +VP   IH PH W  K    L+YP P+VDH  A   TL  +  AK+++
Sbjct: 421 RWLPELADVPDSDIHHPHQWAMKQCRVLDYPQPLVDHALARKQTLQAFEDAKRRA 475


>gi|82543137|ref|YP_407084.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227]
 gi|81244548|gb|ABB65256.1| deoxyribodipyrimidine photolyase [Shigella boydii Sb227]
 gi|320183678|gb|EFW58518.1| Deoxyribodipyrimidine photolyase [Shigella flexneri CDC 796-83]
 gi|332097668|gb|EGJ02643.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 3594-74]
          Length = 472

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACSNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + PS      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|323170823|gb|EFZ56473.1| deoxyribodipyrimidine photo-lyase [Escherichia coli LT-68]
          Length = 472

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + PS      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K++
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKEA 472


>gi|284920486|emb|CBG33548.1| deoxyribodipyrimidine photolyase [Escherichia coli 042]
          Length = 472

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 248/476 (52%), Positives = 332/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVLCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W ++    +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|187734160|ref|YP_001879362.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94]
 gi|187431152|gb|ACD10426.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94]
          Length = 472

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFIASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + PS      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|193070647|ref|ZP_03051584.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019]
 gi|260866839|ref|YP_003233241.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O111:H- str. 11128]
 gi|300906963|ref|ZP_07124633.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1]
 gi|301305193|ref|ZP_07211291.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1]
 gi|192956035|gb|EDV86501.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019]
 gi|257763195|dbj|BAI34690.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O111:H- str. 11128]
 gi|300401266|gb|EFJ84804.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1]
 gi|300839505|gb|EFK67265.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1]
 gi|315257624|gb|EFU37592.1| FAD binding domain of DNA photolyase [Escherichia coli MS 85-1]
 gi|323180055|gb|EFZ65611.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1180]
          Length = 472

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + PS      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|260853943|ref|YP_003227834.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O26:H11 str. 11368]
 gi|257752592|dbj|BAI24094.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O26:H11 str. 11368]
 gi|323153779|gb|EFZ40026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa14]
          Length = 472

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG++     +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVKTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + PS      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|161504129|ref|YP_001571241.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865476|gb|ABX22099.1| hypothetical protein SARI_02227 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 473

 Score =  531 bits (1368), Expect = e-149,   Method: Composition-based stats.
 Identities = 255/476 (53%), Positives = 336/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++IATP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYIATPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F  SIE + + C Q  V+ LFYN +YE+NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYEYEVNERQRDAAVEKA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           LQ  VIC+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +P P IR +G
Sbjct: 121 LQS-VICEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRASG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E  A+  LR+FC +    Y  +RD PA++GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAAIAQLRQFCAQGADGYASRRDFPAVEGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVTWQENPHYFQAWRKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIVDHK+A   TL+ Y AA+K  
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVDHKQARIATLSAYEAARKGG 473


>gi|293409079|ref|ZP_06652655.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469547|gb|EFF12031.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 472

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 336/476 (70%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++HLVW R DLR+ DN AL AAC  S A+V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTIHLVWFRQDLRLHDNFALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E ++  C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVEQVCAENRVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGTVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W ++    +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIVWTDRVQWQRNPTHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL NVP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRNVPGKAVHEPWKWAEKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|261822355|ref|YP_003260461.1| deoxyribodipyrimidine photolyase [Pectobacterium wasabiae WPP163]
 gi|261606368|gb|ACX88854.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium wasabiae WPP163]
          Length = 492

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 274/476 (57%), Positives = 351/476 (73%), Gaps = 2/476 (0%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           TT +  H+VWLRNDLR+TDN AL+AAC N +A V+AVFIATP QW+QH ++  Q+ F+  
Sbjct: 2   TTPVVTHVVWLRNDLRVTDNLALHAACQNPNATVLAVFIATPAQWKQHDMAPHQATFLLD 61

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L  VQ++L++KGI   YH+C++F  S++WL  +C QQ+ T LFYN QYEINE  RDK +
Sbjct: 62  NLTLVQQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNHQYEINERLRDKQV 121

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + RL   V+C  + DS+LLPPGS+L    +MYKV+TPFR+A I+ L++AD   +P P +R
Sbjct: 122 KDRLTDSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTMCVPAPDVR 181

Query: 184 LTGPVTPSNIPRFFDYP-FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              P+  +     F YP  +  +  FP GE+ AL  LR+FC+E+V  Y +QRD PA  GT
Sbjct: 182 -GEPINNTVAFVPFSYPRVEVNNDDFPCGERAALQQLRRFCREQVQDYDQQRDFPAQPGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL++G++SPRQC+NRL+ E  ++L + + GAF+W NEL+WREFYRHL+  +P +C
Sbjct: 241 SKLSPYLALGIVSPRQCFNRLRTECPEMLERREGGAFTWFNELVWREFYRHLIVSWPLLC 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PF  WT+ ++W +    L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLV
Sbjct: 301 KHRPFTAWTQWVKWRESPEDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLV 360

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G
Sbjct: 361 KDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEG 420

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            FIRHWLPEL  VP + IH PH W DK    LNYP PIVDHK A   TL  + AAK
Sbjct: 421 RFIRHWLPELAIVPDKDIHQPHRWADKQHFKLNYPQPIVDHKTARQDTLAAFEAAK 476


>gi|300816355|ref|ZP_07096577.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1]
 gi|300531045|gb|EFK52107.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1]
          Length = 472

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|218704025|ref|YP_002411544.1| deoxyribodipyrimidine photolyase [Escherichia coli UMN026]
 gi|293403952|ref|ZP_06647946.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412]
 gi|298379728|ref|ZP_06989333.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302]
 gi|300900701|ref|ZP_07118851.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1]
 gi|218431122|emb|CAR11998.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           UMN026]
 gi|291428538|gb|EFF01563.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412]
 gi|298279426|gb|EFI20934.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302]
 gi|300355813|gb|EFJ71683.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1]
          Length = 472

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAKLINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 MIEPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQSGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALEGGAGSV--WLNELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W ++   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIVWTDRVQWQRNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|301647446|ref|ZP_07247253.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1]
 gi|301074420|gb|EFK89226.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1]
          Length = 472

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 250/474 (52%), Positives = 331/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + PS      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDQGGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|300918366|ref|ZP_07134966.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1]
 gi|300414429|gb|EFJ97739.1| FAD binding domain of DNA photolyase [Escherichia coli MS 115-1]
          Length = 472

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 249/474 (52%), Positives = 330/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDHEGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|191167217|ref|ZP_03029036.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A]
 gi|309797420|ref|ZP_07691812.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7]
 gi|190902765|gb|EDV62495.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A]
 gi|308118944|gb|EFO56206.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7]
          Length = 472

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|323976322|gb|EGB71412.1| DNA photolyase [Escherichia coli TW10509]
          Length = 472

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 253/474 (53%), Positives = 336/474 (70%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC  S A+V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGGPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM ++PS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYHPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W DK+ ++L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWADKSGVTLDYPQPIVDHKEARVRTLAAYEAARK 470


>gi|16128683|ref|NP_415236.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107566|ref|AP_001346.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160187|ref|YP_001457505.1| deoxyribodipyrimidine photolyase [Escherichia coli HS]
 gi|170080375|ref|YP_001729695.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188495323|ref|ZP_03002593.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638]
 gi|238899973|ref|YP_002925769.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           BW2952]
 gi|256023690|ref|ZP_05437555.1| deoxyribodipyrimidine photolyase [Escherichia sp. 4_1_40B]
 gi|300947213|ref|ZP_07161423.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1]
 gi|301027120|ref|ZP_07190490.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1]
 gi|307137319|ref|ZP_07496675.1| deoxyribodipyrimidine photolyase [Escherichia coli H736]
 gi|331641209|ref|ZP_08342344.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H736]
 gi|130152|sp|P00914|PHR_ECOLI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|147268|gb|AAA24388.1| deoxyribopyrimidine photolyase [Escherichia coli]
 gi|1651311|dbj|BAA35367.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K12 substr. W3110]
 gi|1786926|gb|AAC73802.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. MG1655]
 gi|6006450|emb|CAB56782.1| DNA photolyase [Escherichia coli str. K-12 substr. W3110]
 gi|157065867|gb|ABV05122.1| deoxyribodipyrimidine photolyase [Escherichia coli HS]
 gi|169888210|gb|ACB01917.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188490522|gb|EDU65625.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638]
 gi|238860746|gb|ACR62744.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           BW2952]
 gi|260450139|gb|ACX40561.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli DH1]
 gi|299879409|gb|EFI87620.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1]
 gi|300453199|gb|EFK16819.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1]
 gi|309700930|emb|CBJ00227.1| deoxyribodipyrimidine photolyase [Escherichia coli ETEC H10407]
 gi|315135364|dbj|BAJ42523.1| deoxyribodipyrimidine photolyase [Escherichia coli DH1]
 gi|315614653|gb|EFU95294.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3431]
 gi|323938286|gb|EGB34543.1| DNA photolyase [Escherichia coli E1520]
 gi|323942969|gb|EGB39132.1| DNA photolyase [Escherichia coli E482]
 gi|331038007|gb|EGI10227.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H736]
 gi|332342043|gb|AEE55377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNK88]
          Length = 472

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 250/474 (52%), Positives = 332/474 (70%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + PS      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|157154932|ref|YP_001461868.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A]
 gi|218553235|ref|YP_002386148.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI1]
 gi|218694131|ref|YP_002401798.1| deoxyribodipyrimidine photolyase [Escherichia coli 55989]
 gi|256021218|ref|ZP_05435083.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
 gi|300926110|ref|ZP_07141923.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1]
 gi|301327896|ref|ZP_07221069.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1]
 gi|332282445|ref|ZP_08394858.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
 gi|157076962|gb|ABV16670.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A]
 gi|218350863|emb|CAU96561.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           55989]
 gi|218360003|emb|CAQ97550.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           IAI1]
 gi|300417809|gb|EFK01120.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1]
 gi|300845580|gb|EFK73340.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1]
 gi|323185134|gb|EFZ70500.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1357]
 gi|332104797|gb|EGJ08143.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
          Length = 472

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 328/476 (68%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|329296060|ref|ZP_08253396.1| deoxyribodipyrimidine photolyase [Plautia stali symbiont]
          Length = 477

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 266/479 (55%), Positives = 342/479 (71%), Gaps = 6/479 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVWLRNDLRI DN AL AAC  S A+V+A+FIATP QW+QH ++ +Q+ FI+ +L 
Sbjct: 1   MSTHLVWLRNDLRINDNSALAAACRESQAEVLALFIATPGQWQQHSMAPKQAAFIHQNLC 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+SL+++GI   +HQC +F  S+++L ++C Q +V  LFYN QYEINE +RD  +EK+
Sbjct: 61  LLQQSLAERGIKLHFHQCDDFAASVDYLATFCQQHKVDALFYNYQYEINERQRDAAVEKQ 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  + V+C+ FDDS+LLPPGS+   +  M+KV+TPF KA I+ L Q        P  R  
Sbjct: 121 LDQQSVVCQGFDDSLLLPPGSVQTGSNSMFKVFTPFSKAFIRRLQQGLPECHHAPKARAR 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV        FDYP +  D  + P GE+ AL  LR+F +++V  Y +QRDIPAI GTS+
Sbjct: 181 APVAAGKKIAAFDYPLEEFDETWFPAGEEAALKQLRQFVQQRVEKYDQQRDIPAIDGTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLSPRQC +R+ +E    L      A  WLNEL+WREFYRHLM  +P++C  
Sbjct: 241 LSPYLAIGVLSPRQCLHRILKEHPQAL--NNGSALVWLNELVWREFYRHLMVTFPALCKH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF+ WT  + W ++   L AW+QG TG+PI+DAAMRQLNT+GWMHNRLRMITASFLVKD
Sbjct: 299 QPFVDWTRNVSWQQNEQYLTAWQQGKTGYPIVDAAMRQLNTLGWMHNRLRMITASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWA--ASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           LL+DWR GE YFM QL+DGDLA+NNGGWQWA    TG D+ PYFRIFNPT QG+RFD QG
Sbjct: 359 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTGTDAAPYFRIFNPTTQGERFDKQG 418

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            FIR WLPEL +VP   IH PH+W +KN+  L+YP PIV+HK A   TL+ +  A+  +
Sbjct: 419 EFIRRWLPELQDVPDSAIHQPHAWAEKNNKKLDYPAPIVEHKAARKKTLDAFERARSAA 477


>gi|212711667|ref|ZP_03319795.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
           30120]
 gi|212685769|gb|EEB45297.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
           30120]
          Length = 477

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 269/477 (56%), Positives = 338/477 (70%), Gaps = 3/477 (0%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MSV HLVW RNDLR+TDNKAL  AC +  A VI V+IATPEQW  H +S RQ  F++ +L
Sbjct: 1   MSVCHLVWFRNDLRVTDNKALTFACEDPTATVIGVYIATPEQWATHNVSPRQIAFLHQNL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +++Q +L+++GI    H  + F DS++WL  +  QQ  T L++N QYE+NE  RD+ L +
Sbjct: 61  VELQHALAKRGIPLICHTAATFADSVKWLLDFAQQQNATGLYFNHQYELNERLRDEQLRQ 120

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           + QH  I  ++DD++LLPPGS+      MY+VYTPFR+A +  L+ +D RS P P  R  
Sbjct: 121 QSQHLNIL-TYDDALLLPPGSVTTQKGDMYQVYTPFRRAFLSQLMMSDFRSFPAPKPRGA 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   N    F +      P F  GE  AL  LR+FC E+V  Y   RDIPAI GTSQL
Sbjct: 180 A-LAVENTHPLFVHQSVETSPQFIAGEHAALAKLRQFCSERVQDYQRDRDIPAINGTSQL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++GVLSPRQC NRL  E   +    +SG FSWLNELIWREFY HL+  +P +C  +
Sbjct: 239 SPYLALGVLSPRQCVNRLLAENPQVFDSQESGGFSWLNELIWREFYSHLLVAFPRLCRHQ 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ I+WN D  +  AWK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDL
Sbjct: 299 PFIKWTQHIQWNPDDAIFSAWKSGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDL 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR GE YFMSQL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQGTFI
Sbjct: 359 LVDWRKGEHYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           R WLPEL +VP ++IH PH+W + + +SLNYP PIVDHK+A   TL  + A K++S+
Sbjct: 419 REWLPELRDVPEKFIHEPHTWAESHQVSLNYPTPIVDHKQARLMTLEAFEAGKRKSI 475


>gi|291281640|ref|YP_003498458.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
           CB9615]
 gi|209776604|gb|ACI86614.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|290761513|gb|ADD55474.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
           CB9615]
 gi|320654283|gb|EFX22336.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659916|gb|EFX27458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 472

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 252/474 (53%), Positives = 331/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL NVP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|110640918|ref|YP_668646.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
 gi|191174072|ref|ZP_03035588.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
 gi|300996480|ref|ZP_07181454.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
 gi|110342510|gb|ABG68747.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
 gi|190905680|gb|EDV65303.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
 gi|300304534|gb|EFJ59054.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
 gi|324010431|gb|EGB79650.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1]
          Length = 472

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC      Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCLNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|331662061|ref|ZP_08362984.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143]
 gi|331060483|gb|EGI32447.1| deoxyribodipyrimidine photolyase [Escherichia coli TA143]
          Length = 472

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 253/476 (53%), Positives = 334/476 (70%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT+LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTRLFYNYQYEVNERARDAQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W DK+ ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWADKSGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|271499741|ref|YP_003332766.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586]
 gi|270343296|gb|ACZ76061.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586]
          Length = 481

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 266/475 (56%), Positives = 346/475 (72%), Gaps = 1/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R+DLR+TDN AL+AAC + DA+V AVFIATP+QW  H ++  Q+ F+  +L 
Sbjct: 1   MTTHLVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHDMAPCQAAFLLGNLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L +KGI   Y QC +F  S+ WL  +C +++VT+LFYNRQYE NE +RD  L + 
Sbjct: 61  CLQQALQEKGIPLHYQQCDDFAASVRWLADFCRERQVTQLFYNRQYEWNERQRDGQLTQA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L    +C+ FDDS+LLPPGS++  + +MYKV+TPFR A I+ L   D+ SLP P  R  G
Sbjct: 121 LAGVTVCREFDDSLLLPPGSVVTGSGEMYKVFTPFRTAFIKRLQLQDVSSLPAPVTRQQG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            VT + +   FDYP   +   FP+GE  A+  LR+FC+E+V +Y   RD+PA   TS+LS
Sbjct: 181 DVTLAPLAP-FDYPQAEVHADFPVGEAAAVQRLRQFCREQVAFYHALRDLPARPATSKLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++G+LSPRQC+NRL+ E  D L +P+ GAF+W NEL+WREFYRHL+ F PS+C  +P
Sbjct: 240 PYLALGILSPRQCFNRLRMEHPDWLSQPEGGAFTWFNELVWREFYRHLLVFSPSLCRHQP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT ++ W      L AW++G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL
Sbjct: 300 FIGWTRRVAWRHAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMS+LLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIR
Sbjct: 360 IDWREGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPDGEFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           HW+PEL  +P + +H PH W       ++YP PIVDHK+A   TL  + AAK+++
Sbjct: 420 HWIPELAQIPGKAVHQPHDWAACQHRRIDYPAPIVDHKQARTRTLAAFEAAKQEA 474


>gi|170020947|ref|YP_001725901.1| deoxyribodipyrimidine photolyase [Escherichia coli ATCC 8739]
 gi|169755875|gb|ACA78574.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 8739]
          Length = 472

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|331651706|ref|ZP_08352725.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           M718]
 gi|331049984|gb|EGI22042.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           M718]
          Length = 472

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 250/474 (52%), Positives = 331/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|292898878|ref|YP_003538247.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946]
 gi|291198726|emb|CBJ45835.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946]
          Length = 482

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 275/478 (57%), Positives = 348/478 (72%), Gaps = 5/478 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  A VIA+FIATP+QWR H ++ +Q+ FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPQQWRMHHMAPKQAEFIWQSLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ KGIV    QC +F  S+  L  +C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 61  DVQQSLAAKGIVLHVAQCDDFSASVTLLQDFCREHRVDRLFYNYQYEVNERQRDAAVERA 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L +  V+ + FDDS+LLPPGS+L    +MYKV+TPF KA ++ L Q     LP PA+R +
Sbjct: 121 LFEDDVVSQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRQS 180

Query: 186 GPVTPSN-IPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G + P     + FDYP + I+  +FP GE+ A+  LR+FC++ V  Y +QRD+PA  GTS
Sbjct: 181 GAIEPEAGSLKPFDYPREDIESSLFPSGEKAAIARLREFCQQAVTDYPKQRDLPARDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L   +   F WLNELIWREFYRHL+  +P++C 
Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPAGLEDSR--VFVWLNELIWREFYRHLLVAFPALCR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF  WT  ++W  D   L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 299 HQPFTRWTNSVKWRDDKQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 359 DLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR WLPEL  VPT+YIH PH W  KN  +L+YPLP+VDHK+A   TL+ + AA+K  
Sbjct: 419 FIRRWLPELRQVPTEYIHQPHQWARKNQRTLDYPLPLVDHKQARQQTLDVFEAARKNG 476


>gi|238762829|ref|ZP_04623797.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC
           33638]
 gi|238698840|gb|EEP91589.1| Deoxyribodipyrimidine photo-lyase [Yersinia kristensenii ATCC
           33638]
          Length = 481

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 283/477 (59%), Positives = 343/477 (71%), Gaps = 2/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLR+TDN AL+AAC +  A V+AVFIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRLTDNLALHAACQDPQAIVMAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+++GI   YHQC +F DSI WL+ +C QQ V  LFYN+QYE+NE  RD+ L  +
Sbjct: 61  LLQSALAERGIPLHYHQCDDFKDSITWLNDFCQQQPVDALFYNQQYELNERVRDEALMAQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I C  F DSVLLPPG++L    +MYKV+TPFR+A IQ L+ +D RS+P P  R T
Sbjct: 121 LSQRAIACHGFHDSVLLPPGTVLTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKARTT 180

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             VTPS     FDYP Q +D  +FP GE+ AL  LR+FC+E    Y +QRD PAI GTS 
Sbjct: 181 AAVTPSQPLAPFDYPQQPVDNQLFPAGEEAALQRLRRFCREDAQDYQQQRDFPAIAGTSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC NRL+ E  DLL   + GAF WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPDLLENVEGGAFIWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 HPFISWTDAVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 361 LLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP P+VDHK+A   TL  + AAK+  
Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQPLDYPPPLVDHKQARLATLAAFEAAKRDG 477


>gi|312970785|ref|ZP_07784964.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70]
 gi|310336546|gb|EFQ01713.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70]
          Length = 472

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 328/476 (68%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FD SV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|193065554|ref|ZP_03046622.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
 gi|194429065|ref|ZP_03061596.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
 gi|260842916|ref|YP_003220694.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O103:H2 str. 12009]
 gi|192926843|gb|EDV81469.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
 gi|194412896|gb|EDX29187.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
 gi|257758063|dbj|BAI29560.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O103:H2 str. 12009]
 gi|320198176|gb|EFW72780.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B]
 gi|323158756|gb|EFZ44769.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010]
          Length = 472

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 328/476 (68%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|194439253|ref|ZP_03071333.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1]
 gi|253774322|ref|YP_003037153.1| deoxyribodipyrimidine photolyase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160778|ref|YP_003043886.1| deoxyribodipyrimidine photolyase [Escherichia coli B str. REL606]
 gi|300929490|ref|ZP_07144958.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1]
 gi|194421838|gb|EDX37845.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1]
 gi|253325366|gb|ACT29968.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972679|gb|ACT38350.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli B
           str. REL606]
 gi|253976873|gb|ACT42543.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           BL21(DE3)]
 gi|300462599|gb|EFK26092.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1]
 gi|313848579|emb|CAQ31174.2| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
           coli BL21(DE3)]
 gi|323963088|gb|EGB58658.1| DNA photolyase [Escherichia coli H489]
          Length = 473

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|323971992|gb|EGB67212.1| DNA photolyase [Escherichia coli TA007]
          Length = 472

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 250/474 (52%), Positives = 331/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + PS      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LNDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|307315377|ref|ZP_07594947.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W]
 gi|306905271|gb|EFN35815.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W]
 gi|315059950|gb|ADT74277.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
           coli W]
 gi|323379489|gb|ADX51757.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli KO11]
          Length = 472

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMI+ASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMISASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|325498130|gb|EGC95989.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ECD227]
          Length = 472

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 252/476 (52%), Positives = 332/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSAHVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDD V+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDCVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SLDPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGASQYDQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM ++PS+C  +
Sbjct: 239 SASLATGRLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYHPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y  AKK +
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQPIVDHKEARLRTLAAYEEAKKGA 472


>gi|323967456|gb|EGB62875.1| DNA photolyase [Escherichia coli M863]
 gi|327254382|gb|EGE66004.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_7v]
          Length = 472

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 252/474 (53%), Positives = 332/474 (70%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R + 
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGVPECVAAPKVRSSV 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +  +      +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 MIEAAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQSGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARVRTLAAYEAARK 470


>gi|15829987|ref|NP_308760.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           Sakai]
 gi|168750637|ref|ZP_02775659.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757158|ref|ZP_02782165.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763986|ref|ZP_02788993.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767146|ref|ZP_02792153.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777031|ref|ZP_02802038.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779189|ref|ZP_02804196.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786859|ref|ZP_02811866.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC869]
 gi|168801385|ref|ZP_02826392.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC508]
 gi|195939049|ref|ZP_03084431.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809646|ref|ZP_03251983.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815503|ref|ZP_03256682.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822977|ref|ZP_03263295.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397896|ref|YP_002269331.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325709|ref|ZP_03441793.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791854|ref|YP_003076691.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224409|ref|ZP_05938690.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261254600|ref|ZP_05947133.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
           coli O157:H7 str. FRIK966]
 gi|13360191|dbj|BAB34156.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767666|gb|EDU31510.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015195|gb|EDU53317.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003074|gb|EDU72060.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355803|gb|EDU74222.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363333|gb|EDU81752.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365922|gb|EDU84338.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373172|gb|EDU91588.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC869]
 gi|189376468|gb|EDU94884.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC508]
 gi|208729447|gb|EDZ79048.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732151|gb|EDZ80839.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737170|gb|EDZ84854.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159296|gb|ACI36729.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209776598|gb|ACI86611.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|209776600|gb|ACI86612.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|209776602|gb|ACI86613.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|209776606|gb|ACI86615.1| deoxyribodipyrimidine photolyase [Escherichia coli]
 gi|217321930|gb|EEC30354.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591254|gb|ACT70615.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O157:H7 str. TW14359]
 gi|320193102|gb|EFW67742.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637955|gb|EFX07724.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           G5101]
 gi|320643350|gb|EFX12530.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str.
           493-89]
 gi|320648699|gb|EFX17332.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H- str. H
           2687]
 gi|320664741|gb|EFX31879.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326341556|gb|EGD65346.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           1044]
 gi|326345773|gb|EGD69512.1| Deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           1125]
          Length = 472

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 251/474 (52%), Positives = 331/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+++A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL NVP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|74311231|ref|YP_309650.1| deoxyribodipyrimidine photolyase [Shigella sonnei Ss046]
 gi|73854708|gb|AAZ87415.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
           sonnei Ss046]
 gi|323163860|gb|EFZ49670.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 53G]
          Length = 472

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 250/474 (52%), Positives = 330/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + PS      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGVGSV--WLNELIWREFYRHLITYHPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P I WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PIIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDLEGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL NVP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RQWLPELRNVPGKSVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|15800411|ref|NP_286423.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 EDL933]
 gi|12513619|gb|AAG55031.1|AE005249_2 deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
           coli O157:H7 str. EDL933]
          Length = 472

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 251/474 (52%), Positives = 331/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+++A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARLLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQXNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL NVP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|170769095|ref|ZP_02903548.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627]
 gi|170122167|gb|EDS91098.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627]
          Length = 472

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 250/474 (52%), Positives = 333/474 (70%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++HLVW R DLR+ DN AL  AC NS A+V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTIHLVWFRQDLRLHDNLALAVACRNSSARVLALYIATPCQWAAHSMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+  V  Y +QRD PA++GTS+L
Sbjct: 180 SIDPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGVGQYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G  SPRQC +RL  E    L         WLNELIWREFYRHL+ +YP++C  +
Sbjct: 239 SASLATGGGSPRQCLHRLLAEQPQALEGGAGSV--WLNELIWREFYRHLITYYPTLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W  K  + L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAQKAGVRLDYPEPIVDHKEARLRTLAAYEAARK 470


>gi|320179459|gb|EFW54416.1| Deoxyribodipyrimidine photolyase [Shigella boydii ATCC 9905]
          Length = 472

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 248/474 (52%), Positives = 330/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +M+KV+TPF+ A ++ L +     + VP +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMHKVFTPFKNAWLKRLREGMPECVAVPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|333010183|gb|EGK29618.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-272]
 gi|333021140|gb|EGK40397.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-227]
          Length = 472

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 250/474 (52%), Positives = 329/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIVWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL NVP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RRWLPELRNVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|301020834|ref|ZP_07184898.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1]
 gi|300398480|gb|EFJ82018.1| FAD binding domain of DNA photolyase [Escherichia coli MS 69-1]
          Length = 472

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC  S A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  RLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQ W++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQVWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|242238580|ref|YP_002986761.1| deoxyribodipyrimidine photolyase [Dickeya dadantii Ech703]
 gi|242130637|gb|ACS84939.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech703]
          Length = 477

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 273/476 (57%), Positives = 350/476 (73%), Gaps = 1/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLRITDN ALYAAC + +A+V AVFIATP QW++H ++ RQ+  ++  +L
Sbjct: 1   MTTHLVWFRNDLRITDNLALYAACQDPEAQVEAVFIATPGQWKRHEMAPRQAALLFDCVL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q++L +KGI   YHQC +FD ++EWL + C Q++ T LFYNRQYE NE RRD+ L + 
Sbjct: 61  QLQRALYEKGIPLHYHQCEDFDGALEWLAALCRQRQATHLFYNRQYEWNEQRRDQALSRH 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L++ V  ++FDDS+LL PGS++  + +MYKV+TPFR A I  L+Q    S+P P  R   
Sbjct: 121 LENGVRIQAFDDSLLLAPGSVVTGSGEMYKVFTPFRTAFITQLLQTSTDSVPAPTARRQP 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P   P  FDYP   +   FP GE  AL  LR+FC+E+V+ Y E RD+P+   TS+LS
Sbjct: 181 -LPPLTPPAPFDYPQLDVAGDFPAGEAAALQRLRQFCREQVHVYHELRDVPSRPATSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++GVLSPRQC+NRL+ E  D L + + GAF W NEL+WREFYRHL+ F+P++C  +P
Sbjct: 240 PYLALGVLSPRQCFNRLRAEHPDWLAQREGGAFCWFNELVWREFYRHLLVFHPALCRHRP 299

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ W      L AW++G TG+PI+DA MRQL+  GWMHNRLRMI ASFLVKDLL
Sbjct: 300 FIAWTDRVVWRSAPQELLAWQRGETGYPIVDAGMRQLHQTGWMHNRLRMICASFLVKDLL 359

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G FIR
Sbjct: 360 IDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPNGDFIR 419

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
            W+PEL  VP + IH PH W +K    L+YPLPIVDHK+A   TL  + AAKK ++
Sbjct: 420 RWVPELAGVPGKDIHQPHRWAEKMRCRLDYPLPIVDHKQARVRTLAAFDAAKKLAV 475


>gi|1827916|pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase
 gi|1827917|pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase
          Length = 471

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 249/473 (52%), Positives = 331/473 (69%), Gaps = 5/473 (1%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L  
Sbjct: 1   TTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNG 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ L
Sbjct: 61  LQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G 
Sbjct: 121 R-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGS 179

Query: 188 VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           + PS      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS
Sbjct: 180 IEPSPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLS 238

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +P
Sbjct: 239 ASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRP 296

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL
Sbjct: 297 FIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLL 356

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR
Sbjct: 357 IDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIR 416

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL +VP + +H P  W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 QWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 469


>gi|227114750|ref|ZP_03828406.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 492

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 275/476 (57%), Positives = 352/476 (73%), Gaps = 2/476 (0%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           TT    H+VWLRNDLR+TDN ALYAAC + +A V+AVFIATP QW +H ++ RQ+ F+  
Sbjct: 2   TTHAVTHVVWLRNDLRVTDNLALYAACQDPNATVLAVFIATPVQWEKHDMAPRQAAFLLE 61

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L  VQ++L++KGI   YH+C++F  S++WL  +C QQ+ T LFYN QYEINE  RDK +
Sbjct: 62  NLRLVQQALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQV 121

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + RL   V+C  + DS+LLPPGS+L    +MYKV+TPFR+A I+ L+++D   +P P  R
Sbjct: 122 KDRLADSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVPAPDAR 181

Query: 184 LTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              P+        F YP + +D   FP GE+ AL  LR+FC+E+V  Y +QRD PA+ GT
Sbjct: 182 -GEPINNMVELAPFSYPQREVDGDDFPSGERAALQQLRRFCREQVQDYDQQRDFPALPGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL++G++SPRQC+NRL+ E  ++L + + GAF+W NEL+WREFYRHL+  +P +C
Sbjct: 241 SKLSPYLALGIVSPRQCFNRLRAECPEMLERREGGAFTWFNELVWREFYRHLIVSWPQLC 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PF  WT+ ++W +    L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLV
Sbjct: 301 KHRPFTAWTQWVKWRESREDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLV 360

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G
Sbjct: 361 KDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEG 420

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            FIRHWLPEL  VP + IH PH W DK+   LNYPLPIVDHK A   TL  + AAK
Sbjct: 421 RFIRHWLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQDTLAAFEAAK 476


>gi|222032448|emb|CAP75187.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli LF82]
 gi|312945236|gb|ADR26063.1| deoxyribodipyrimidine photolyase [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 472

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 248/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|110804662|ref|YP_688182.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401]
 gi|110614210|gb|ABF02877.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401]
 gi|332760931|gb|EGJ91219.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 4343-70]
 gi|333008008|gb|EGK27484.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-218]
          Length = 472

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 249/474 (52%), Positives = 329/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|261344548|ref|ZP_05972192.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
 gi|282567462|gb|EFB72997.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
          Length = 478

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 268/473 (56%), Positives = 340/473 (71%), Gaps = 2/473 (0%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           HLVW R DLR+TDNKAL +AC +SD++VI VFIATP+QW  HG+S RQ  F++ +L+++Q
Sbjct: 5   HLVWFRGDLRVTDNKALSSACQDSDSQVIGVFIATPDQWASHGVSPRQITFMHQNLIELQ 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L+++GI    H  S F DS +WL  Y  QQ+V  LF+N+QYE+NE +RD+ + +  Q 
Sbjct: 65  RALAERGIPLVCHTVSTFADSAKWLLEYAKQQQVKALFFNQQYELNERQRDQWVTQHAQS 124

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             +  S+DD+VL+ PG +     +MY+VYTPFR+A +  L+  D RSLP P  R + P+ 
Sbjct: 125 LNVF-SYDDAVLISPGVVQTQKGEMYQVYTPFRRAFLSQLMMTDYRSLPAPKPR-SEPII 182

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             N    F +    I P F  GEQ AL  LR FC+E+V  Y   RDIP+I GTSQLSPYL
Sbjct: 183 IDNSQPLFPHTPVEIAPQFIAGEQAALAKLRLFCRERVQDYQRDRDIPSIDGTSQLSPYL 242

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           +IG LSPRQC NRL  E   +   P SG FSWLNEL+WREFY HL+  +P +C  +PFI 
Sbjct: 243 AIGTLSPRQCVNRLLAENPHIFDSPDSGGFSWLNELVWREFYSHLLVAFPRLCRHQPFIE 302

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
           WT+ I+WN D     AWK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDLL+DW
Sbjct: 303 WTQHIQWNPDEDAFTAWKTGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKDLLIDW 362

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE YF+SQL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQGTFI  WL
Sbjct: 363 RKGEHYFISQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDPQGTFIHKWL 422

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           PEL NVP Q+IH PH+W + N ++LNYP PIVDHK+A  +TL  + A K+ S+
Sbjct: 423 PELRNVPEQFIHEPHTWAESNQVTLNYPTPIVDHKQARLNTLEAFEAGKRGSM 475


>gi|194433989|ref|ZP_03066260.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012]
 gi|194417754|gb|EDX33852.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012]
 gi|332096470|gb|EGJ01466.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 155-74]
          Length = 472

 Score =  526 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 248/474 (52%), Positives = 330/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +
Sbjct: 239 SVSLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W+ K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWVQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|218688505|ref|YP_002396717.1| deoxyribodipyrimidine photolyase [Escherichia coli ED1a]
 gi|218426069|emb|CAR06886.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           ED1a]
          Length = 472

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 333/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFHEVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|227327531|ref|ZP_03831555.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 492

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 275/476 (57%), Positives = 353/476 (74%), Gaps = 2/476 (0%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           TT +  H+VWLRNDLR+TDN ALYAAC + +A V+AVFIATP QW +H ++ RQ+ F+  
Sbjct: 2   TTHVVTHVVWLRNDLRVTDNLALYAACQDPNASVLAVFIATPAQWEKHDMAPRQAAFLLE 61

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L  VQ +L++KGI   YH+C++F  S++WL  +C QQ+ T LFYN QYEINE  RDK +
Sbjct: 62  NLTLVQHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQV 121

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + RL   V+   + DS+LLPPGS+L    +MYKV+TPFR+A I+ L+++D   +P P  R
Sbjct: 122 KDRLADSVVFHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLESDTTCVPAPDAR 181

Query: 184 LTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              P+  +     F YP + +D   FP GE+ AL  LR+FC+E+V  Y +QRD PA+ GT
Sbjct: 182 -GEPIDNTVELAPFSYPQREVDSEDFPRGERAALQQLRRFCREQVQDYDQQRDFPALPGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL++G++SPRQC+NRL+ E  D+L + + GAF+W NEL+WREFYRHL+  +P +C
Sbjct: 241 SKLSPYLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLC 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PF  WT+ ++W +    L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLV
Sbjct: 301 KHRPFTAWTQWVKWRESPKDLAAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMICASFLV 360

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G
Sbjct: 361 KDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPEG 420

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            FIRHWLPEL  VP + IH PH W DK+   LNYPLPIVDHK A  +TL  + AAK
Sbjct: 421 RFIRHWLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQNTLAAFEAAK 476


>gi|331672227|ref|ZP_08373018.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280]
 gi|331070422|gb|EGI41786.1| deoxyribodipyrimidine photolyase [Escherichia coli TA280]
          Length = 472

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC  S A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|331682139|ref|ZP_08382761.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H299]
 gi|331080563|gb|EGI51739.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           H299]
          Length = 472

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSASVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERARDVQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTDNHEMYKVFTPFQNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGMTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|306812880|ref|ZP_07447073.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101]
 gi|305853643|gb|EFM54082.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101]
 gi|324006250|gb|EGB75469.1| FAD binding domain of DNA photolyase [Escherichia coli MS 57-2]
          Length = 472

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 332/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|333007384|gb|EGK26864.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri VA-6]
          Length = 472

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 248/474 (52%), Positives = 328/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A   TL  Y  A+K
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYETARK 470


>gi|50120288|ref|YP_049455.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610814|emb|CAG74259.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 497

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 271/475 (57%), Positives = 342/475 (72%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           T     H+VWLRNDLRITDN ALYAAC +  A V+AVFIATP QW +H ++ RQ+ F+  
Sbjct: 7   THHAVTHVVWLRNDLRITDNLALYAACQDPSATVLAVFIATPAQWEKHDMAPRQAAFLLE 66

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L  VQ  L++KGI   YH+C++F  S++WL  +C +Q+ T LFYN QYEINE  RDK +
Sbjct: 67  NLTLVQHVLAEKGIPLHYHECADFAASVDWLMQFCAEQQATDLFYNHQYEINERLRDKQV 126

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + RL   V+C  + DS+LLPPGS+L    +MYKV+TPFR+A I+ L++AD   +P P  R
Sbjct: 127 KDRLADSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEADTTCVPAPDAR 186

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                  + +  F     +     FP GE+ AL  LR+FC+E+V  Y +QRD PA+ GTS
Sbjct: 187 GEPINNTAELVPFSYPQCEVDSEDFPCGERAALQQLRRFCREQVQDYDQQRDFPALPGTS 246

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL++G++SPRQC+NRL+ E  D+L + + GAF+W NEL+WREFYRHL+  +P +C 
Sbjct: 247 KLSPYLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLCK 306

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF  WT+ ++W +    L AW+QG TG+PI+DAAM QLN  GWMHNRLRMI ASFLVK
Sbjct: 307 HRPFTAWTQWVKWRESPEDLTAWQQGKTGYPIVDAAMHQLNETGWMHNRLRMICASFLVK 366

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP G 
Sbjct: 367 DLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPDGR 426

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIRHWLPEL  VP + IH PH W DK  + LNYPLPIVDHK A   TL  + AAK
Sbjct: 427 FIRHWLPELAAVPDKDIHQPHRWADKQHVKLNYPLPIVDHKTARLDTLAAFEAAK 481


>gi|170681516|ref|YP_001742812.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5]
 gi|300937834|ref|ZP_07152629.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1]
 gi|170519234|gb|ACB17412.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5]
 gi|300457153|gb|EFK20646.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1]
          Length = 472

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS  +V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDD V+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSI--WLNELIWREFYRHLITYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +S  L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|323191055|gb|EFZ76320.1| deoxyribodipyrimidine photo-lyase [Escherichia coli RN587/1]
          Length = 472

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 330/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC  S A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRYSSARVLALYIATPRQWAAHNVSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDAQVERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGMTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|253687618|ref|YP_003016808.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754196|gb|ACT12272.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 497

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 278/477 (58%), Positives = 353/477 (74%), Gaps = 2/477 (0%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           AT   + HLVWLRNDLRITDN AL AAC + +A V+AVFIATP QW +H ++ RQ+ F+ 
Sbjct: 6   ATHHAATHLVWLRNDLRITDNLALSAACQDPNATVLAVFIATPAQWEKHDMAPRQAAFLL 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  VQ +L++KGI   YH+C++F  S++WL  +C QQ+ T LFYN QYEINE  RDK 
Sbjct: 66  ENLTSVQHALAEKGIPLHYHECADFAASVDWLVQFCAQQQATDLFYNYQYEINERLRDKQ 125

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ RL   V+C  + DS+LLPPGS+L    +MYKV+TPFR+A I+ L++A+   +P P  
Sbjct: 126 VKDRLADSVVCHGYHDSLLLPPGSVLTGNGEMYKVFTPFRQAFIKRLLEAETTCVPAPDA 185

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           R   P+        F YP + +D   FP GE+ AL  LR+FC+E+V  Y  QRD+PA+ G
Sbjct: 186 R-GEPIHNMMALAPFSYPQREVDSDDFPCGERAALQQLRRFCREQVQDYDRQRDVPALPG 244

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSPYL++G++SPRQC+NRL+ E  D+L + + GAF+W NEL+WREFYRHL+  +P +
Sbjct: 245 TSKLSPYLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQL 304

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           C  +PF  WT+ ++W + S  L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFL
Sbjct: 305 CKHRPFTAWTQWVKWRESSEDLTAWQQGKTGYPIVDAAMRQLNGTGWMHNRLRMICASFL 364

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+
Sbjct: 365 VKDLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPE 424

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           G FIRHWLPEL  VP + IH PH W DK+   LNYPLPIVDHK A  +TL  + AAK
Sbjct: 425 GRFIRHWLPELAAVPDKDIHQPHRWADKHHHQLNYPLPIVDHKTARQNTLAAFEAAK 481


>gi|324116248|gb|EGC10169.1| DNA photolyase [Escherichia coli E1167]
          Length = 472

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 248/476 (52%), Positives = 327/476 (68%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  + L+YP  IVDHK+A   TL  Y  A+K +
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQLIVDHKEARLRTLAAYEEARKGA 472


>gi|161615066|ref|YP_001589031.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364430|gb|ABX68198.1| hypothetical protein SPAB_02826 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 500

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 251/479 (52%), Positives = 335/479 (69%), Gaps = 4/479 (0%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
            + M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A
Sbjct: 25  RSCMPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISA 84

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L  +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +
Sbjct: 85  QLNALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAV 144

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           EK L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR
Sbjct: 145 EKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIR 203

Query: 184 LTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           ++G ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GT
Sbjct: 204 VSGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGT 263

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C
Sbjct: 264 SRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALC 321

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLV
Sbjct: 322 KHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLV 381

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G
Sbjct: 382 KDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDG 441

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            FIR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 442 EFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 500


>gi|85058846|ref|YP_454548.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str.
           'morsitans']
 gi|84779366|dbj|BAE74143.1| deoxyribodipyrimidine photolyase [Sodalis glossinidius str.
           'morsitans']
          Length = 481

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 265/475 (55%), Positives = 337/475 (70%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++HLVWLRNDLR+ DN AL+AAC ++ A+V+AVFIATP+QWR H +S RQ+ FI  +L 
Sbjct: 1   MTIHLVWLRNDLRLHDNTALHAACQDTQARVLAVFIATPQQWRDHDMSPRQAAFIRQNLR 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+ +GI   YHQC++F   +EWL ++C ++RV KLFYN QYE+NE  RD+ LE+R
Sbjct: 61  HLAEELAARGIALHYHQCADFAAQVEWLAAFCQRERVDKLFYNYQYELNERERDRRLEQR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +  + +C+ FDDSVLLPPGS+     QMYKVYTPFR A +  L + D   LP P+ R   
Sbjct: 121 IGEKTLCQGFDDSVLLPPGSVHTGNQQMYKVYTPFRNAFLGRLEEQDPACLPAPSPRAGA 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P         FDYP       +P GE  AL  LR FC +++  Y   RDIPA+  TS+LS
Sbjct: 181 PCAKVCEIAPFDYPMTPPGEAYPAGEAAALSRLRTFCHQQLQDYHRGRDIPALDATSRLS 240

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L++GVLSPRQC+ RL++ +   L   ++GAF+WLNELIWR+FYRHL+  +P++C  +P
Sbjct: 241 AWLAVGVLSPRQCYQRLRKAYPRALTPGQNGAFTWLNELIWRDFYRHLLVAWPALCRYQP 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FIPWT  + W +D  L  AW  G TG+PI+DAAMRQL   GWMHNRLRMI+ASFLVKDLL
Sbjct: 301 FIPWTRHVVWRQDDDLFDAWCAGRTGYPIVDAAMRQLAETGWMHNRLRMISASFLVKDLL 360

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FIR
Sbjct: 361 IDWRRGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDGDGAFIR 420

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            WLP L +VP  Y+H P+ W D     L+YPLPIVDH KA    L+ Y AAK + 
Sbjct: 421 RWLPALESVPDTYLHQPNRWPDAQRAGLDYPLPIVDHGKARAWALDAYEAAKARG 475


>gi|26246677|ref|NP_752717.1| deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
 gi|227884323|ref|ZP_04002128.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
 gi|300989880|ref|ZP_07179009.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
 gi|301046034|ref|ZP_07193214.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
 gi|26107076|gb|AAN79260.1|AE016757_164 Deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
 gi|227838409|gb|EEJ48875.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
 gi|300301951|gb|EFJ58336.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
 gi|300407283|gb|EFJ90821.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
 gi|307552561|gb|ADN45336.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972]
 gi|315292023|gb|EFU51375.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1]
          Length = 472

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC      Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCLNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|218699057|ref|YP_002406686.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI39]
 gi|218369043|emb|CAR16797.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           IAI39]
          Length = 472

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS  +V+A++IATP QW  H +S RQ+ FI A L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNMSPRQAEFINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  GLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDD V+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP +C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPLLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W ++    +AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|145598860|ref|YP_001162936.1| deoxyribodipyrimidine photolyase [Yersinia pestis Pestoides F]
 gi|145210556|gb|ABP39963.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Pestoides
           F]
          Length = 487

 Score =  524 bits (1351), Expect = e-147,   Method: Composition-based stats.
 Identities = 277/477 (58%), Positives = 344/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R + C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPAPLVDHKQARLATLAAFEAAKRDS 475


>gi|117622905|ref|YP_851818.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1]
 gi|218557628|ref|YP_002390541.1| deoxyribodipyrimidine photolyase [Escherichia coli S88]
 gi|237707328|ref|ZP_04537809.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA]
 gi|115512029|gb|ABJ00104.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1]
 gi|218364397|emb|CAR02076.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           S88]
 gi|226898538|gb|EEH84797.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA]
 gi|294490015|gb|ADE88771.1| deoxyribodipyrimidine photo-lyase [Escherichia coli IHE3034]
 gi|307627874|gb|ADN72178.1| deoxyribodipyrimidine photolyase [Escherichia coli UM146]
 gi|315287176|gb|EFU46588.1| FAD binding domain of DNA photolyase [Escherichia coli MS 110-3]
 gi|320194132|gb|EFW68764.1| Deoxyribodipyrimidine photolyase [Escherichia coli WV_060327]
 gi|323952730|gb|EGB48598.1| DNA photolyase [Escherichia coli H252]
 gi|323958455|gb|EGB54161.1| DNA photolyase [Escherichia coli H263]
          Length = 472

 Score =  524 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P  R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|82775975|ref|YP_402322.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197]
 gi|309786366|ref|ZP_07680992.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617]
 gi|81240123|gb|ABB60833.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197]
 gi|308925760|gb|EFP71241.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617]
          Length = 472

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 249/474 (52%), Positives = 329/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFQNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   F + E+ A+  LR+FC+     Y +QRD PA +GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFLVEEKAAIAQLRQFCQNGAGEYEQQRDFPAAEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C   
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHC 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|24112014|ref|NP_706524.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 301]
 gi|30062127|ref|NP_836298.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2a str. 2457T]
 gi|24050832|gb|AAN42231.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
           flexneri 2a str. 301]
 gi|30040372|gb|AAP16104.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
           flexneri 2a str. 2457T]
 gi|281599976|gb|ADA72960.1| Deoxyribodipyrimidine photolyase [Shigella flexneri 2002017]
 gi|313649656|gb|EFS14080.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2a str. 2457T]
 gi|332761188|gb|EGJ91474.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2747-71]
 gi|332763978|gb|EGJ94216.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-671]
 gi|332768197|gb|EGJ98382.1| deoxyribodipyrimidine photolyase [Shigella flexneri 2930-71]
 gi|333021492|gb|EGK40742.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-304]
          Length = 472

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 248/474 (52%), Positives = 329/474 (69%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP +W  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRKWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WL+ELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PIIDAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP  QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|238898396|ref|YP_002924077.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466155|gb|ACQ67929.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 484

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 277/473 (58%), Positives = 343/473 (72%), Gaps = 2/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVWLR+DLR+TDN+AL AAC +S+AKV+AVFIATP QW+ H ++ RQ+ F+ A L 
Sbjct: 1   MPTHLVWLRHDLRVTDNRALNAACQHSEAKVLAVFIATPIQWKTHHMAPRQAAFLLAHLK 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ  L++  I   YH+C +F D+++WL  +C   +V KLFYN QYEINE RRD  LEK+
Sbjct: 61  AVQARLAELNIPLHYHECDDFQDAVKWLIDFCDHHKVDKLFYNHQYEINESRRDHALEKK 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L H+VIC+ F D+VLLPP  +L    QMY+V+TPFR+A ++ L   +L  +PVP  R   
Sbjct: 121 LSHQVICQGFHDAVLLPPEKVLKENGQMYQVFTPFRRAFLKQLFLTNLSCIPVPKKRDGP 180

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            V+ S     FDYP    D  +FPIGE  A   L +FC  KV  Y   RD+ AI+GTS L
Sbjct: 181 QVSISLTELSFDYPLLDFDTELFPIGEAAAQKQLTRFCDAKVSAYSHARDMLAIKGTSGL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++G+LSPRQC   L+E F + +   K GAF WLNELIWR+FYRHL+  YP +  G 
Sbjct: 241 SPYLTLGILSPRQCLGCLREAFPEGIEDHK-GAFDWLNELIWRDFYRHLLIAYPRLSKGH 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT  ++W+    LL+ W+QG TG+PI+DAAMRQLNT GWMHNRLRMITASFLVKDL
Sbjct: 300 PFIGWTTFVQWHHSDSLLEKWQQGQTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDP+G FI
Sbjct: 360 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPKGEFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           RHWLPELN VP   IH P SW +KN   L+YP PIVDH++A   TL+ +  AK
Sbjct: 420 RHWLPELNPVPESEIHQPWSWAEKNHKQLDYPTPIVDHQQARQATLSAFATAK 472


>gi|123443172|ref|YP_001007146.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090133|emb|CAL12996.1| putative deoxyribodipyrimidine photolyase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 481

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 281/477 (58%), Positives = 338/477 (70%), Gaps = 2/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLR+TDN AL+ AC +  A VIAVFIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRVTDNLALHTACQDPQATVIAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ + I   YHQC +F DSI WL  +C QQ+V  LFYN QYE+NE  RD+ L  +
Sbjct: 61  LLQDALAARAIPLHYHQCDDFKDSITWLADFCQQQQVDALFYNHQYELNERMRDEALMTK 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L HR I C  F DSVLLPPGS+L    +MYKV+TPFR+A IQ L+ +D RS+P P  R T
Sbjct: 121 LSHRAIACHGFHDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKTRTT 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             V PS     FDYP Q +D  +FP GE+ AL  LR FC+E V  Y +QRD PA+ GTS 
Sbjct: 181 AAVIPSQPLAPFDYPQQPVDSQLFPAGEEAALQRLRSFCREDVQDYQQQRDFPAVAGTSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC NRL+ E   +L     GAF WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPQVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 HPFIGWTDAVLWNHSKQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++   SL+YP P+V+HK+A   TL  + AAK+  
Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQSLDYPPPLVEHKQARLATLAAFEAAKRDG 477


>gi|293413984|ref|ZP_06656633.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185]
 gi|291434042|gb|EFF07015.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185]
          Length = 472

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 249/474 (52%), Positives = 332/474 (70%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVELVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ ++PS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LINWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL NVP + +H P  W +K  + L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 417 RQWLPELRNVPGKSVHEPWKWAEKAGVKLDYPQPIVEHKEARVQTLAAYEAARK 470


>gi|22125169|ref|NP_668592.1| deoxyribodipyrimidine photolyase [Yersinia pestis KIM 10]
 gi|45442282|ref|NP_993821.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108811346|ref|YP_647113.1| deoxyribodipyrimidine photolyase [Yersinia pestis Nepal516]
 gi|149365412|ref|ZP_01887447.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
           CA88-4125]
 gi|162421421|ref|YP_001607911.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
 gi|165925225|ref|ZP_02221057.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165937153|ref|ZP_02225718.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008496|ref|ZP_02229394.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212293|ref|ZP_02238328.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167421168|ref|ZP_02312921.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423664|ref|ZP_02315417.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468999|ref|ZP_02333703.1| deoxyribodipyrimidine photolyase [Yersinia pestis FV-1]
 gi|218929768|ref|YP_002347643.1| deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
 gi|229838256|ref|ZP_04458415.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895550|ref|ZP_04510721.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           Pestoides A]
 gi|229898820|ref|ZP_04513965.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901594|ref|ZP_04516716.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           Nepal516]
 gi|270489781|ref|ZP_06206855.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
 gi|294504486|ref|YP_003568548.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
 gi|21958032|gb|AAM84843.1|AE013730_2 deoxyribodipyrimidine photolyase (photoreactivation) [Yersinia
           pestis KIM 10]
 gi|45437146|gb|AAS62698.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774994|gb|ABG17513.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Nepal516]
 gi|115348379|emb|CAL21314.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
 gi|149291825|gb|EDM41899.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
           CA88-4125]
 gi|162354236|gb|ABX88184.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
 gi|165915016|gb|EDR33628.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922832|gb|EDR39983.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992878|gb|EDR45179.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206224|gb|EDR50704.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960657|gb|EDR56678.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167057834|gb|EDR67580.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681523|gb|EEO77617.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           Nepal516]
 gi|229688368|gb|EEO80439.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694622|gb|EEO84669.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701356|gb|EEO89384.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
           Pestoides A]
 gi|262362522|gb|ACY59243.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
 gi|262366473|gb|ACY63030.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
 gi|270338285|gb|EFA49062.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
 gi|294354945|gb|ADE65286.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
 gi|320016095|gb|ADV99666.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 487

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R + C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|237730671|ref|ZP_04561152.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2]
 gi|226906210|gb|EEH92128.1| deoxyribodipyrimidine photolyase [Citrobacter sp. 30_2]
          Length = 472

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 248/474 (52%), Positives = 327/474 (68%), Gaps = 4/474 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC +  A V+A++I+TPEQW+ H ++ RQ+  + A L 
Sbjct: 1   MTTHLVWFRRDLRLHDNLALAAACRDRSAHVLALYISTPEQWKAHDMAPRQAALVNAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+  +F  S+E + + C+Q  V+++FYN QYEINE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVGDFATSVETVKNVCVQHGVSRMFYNYQYEINERQRDAAVEKS 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V+C+ FDDSV+LP G+++    +MYKV+TPF+ A ++ +       +  P +R +G
Sbjct: 121 LPQ-VVCEGFDDSVILPAGAVMTGNHEMYKVFTPFKNAWLKRIKDGIPECVSAPKVRESG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +          YP Q  D   FP  E+ A+  LR FC++    Y + RD PAI GTS+L
Sbjct: 180 ALDSPLTSITLSYPQQDFDSQQFPAEEKLAIAQLRHFCQQAAGEYEQLRDFPAIDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC NRL  E    L         WLNELIWREFYRHLM ++P++C  +
Sbjct: 240 SASLATGGLSPRQCLNRLLVEQPQALEDGAGSV--WLNELIWREFYRHLMTYHPALCRYQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAWK G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTDRVQWQNNPTHLQAWKTGNTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  G FI
Sbjct: 358 LIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL +VP + IH P SW +K  ++L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 418 RQWVPELRDVPGKAIHEPWSWAEKAQVTLSYPRPIVDHKQARLATLAAYEAARK 471


>gi|238786314|ref|ZP_04630253.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
 gi|238712773|gb|EEQ04846.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
          Length = 481

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 281/477 (58%), Positives = 346/477 (72%), Gaps = 2/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLR+TDN ALYAAC +  A+VIAVFIATP+QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWLRNDLRVTDNLALYAACQDEHARVIAVFIATPKQWAAHDMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F DSI WLD++C QQ+V  LFYN+QYE+NE RRD+    +
Sbjct: 61  LLQGALASRGIPLHYHQCDDFQDSIVWLDNFCQQQQVDALFYNQQYELNERRRDEAFTAQ 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L +  + C SF DSVLLPPGS+     +MYK++TPFR+A IQ L+ +D R +P P  R  
Sbjct: 121 LNRQSIACHSFHDSVLLPPGSVQTGNHEMYKIFTPFRRAFIQRLMMSDCRCVPAPQARQN 180

Query: 186 GPVTPSNIPRFFDYP-FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 +    FDYP   A + +FP GE+ AL  LR FC+E+V  Y++QRD PAI GTS 
Sbjct: 181 SGAVELSPLEPFDYPQHSADNSLFPAGEEAALQRLRSFCREQVQDYLQQRDRPAIAGTSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G++SPRQC+NRL+ E  DLL +  SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGIVSPRQCFNRLRAECPDLLERSDSGAFTWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 HPFIGWTDAVRWNHSEQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +GTF
Sbjct: 361 LLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W  +    LNYP P+VDHK A   TL  + AAK+  
Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAQRQQQHLNYPPPLVDHKLARLATLAAFDAAKRDG 477


>gi|283479118|emb|CAY75034.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia
           pyrifoliae DSM 12163]
          Length = 504

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 274/475 (57%), Positives = 347/475 (73%), Gaps = 5/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  A VIA+FIATP QWR H ++ +Q+ FI+ SL 
Sbjct: 28  MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 87

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ +GIV    QC +F  S+  L  +C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 88  DVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 147

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQH  V+ + FDDS+LLPPGS+L    +MYKV+TPF KA ++ L Q     LP PA+R  
Sbjct: 148 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 207

Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G V   +     FDYP + ID  +FP GE+ A+  LR+FC++ V  Y ++R++PA  GTS
Sbjct: 208 GAVEARAGSLVAFDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 267

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L   +   F WLNELIWREFYRHL+  +P++C 
Sbjct: 268 RLSVYLATGVLSPRQCLHRLLKQHPGALEDSR--VFVWLNELIWREFYRHLLVAFPALCR 325

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF+ WT+ ++W  DS  L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 326 HQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 385

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 386 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 445

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIRHWLPEL +VP +YIH PH W  KN  +L+YP P+VDHK A   TL+ + AAK
Sbjct: 446 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAK 500


>gi|300715863|ref|YP_003740666.1| deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661]
 gi|299061699|emb|CAX58815.1| Deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661]
          Length = 475

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 267/477 (55%), Positives = 345/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL+WLRNDLR+ DN AL+AAC ++DA V+A+FIATP QW+ H ++ +Q+ FIY +LL
Sbjct: 1   MATHLIWLRNDLRVHDNYALHAACRDADATVLALFIATPAQWKSHSMAPKQAAFIYQNLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ SL++KGI     QC +F  S+E L  +C Q  V +LFYN QYE+NE +RD   E+R
Sbjct: 61  DVQHSLAEKGIALHTVQCDDFAASVEALSDFCQQHHVDRLFYNYQYEVNERQRDAAAERR 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    +I + FDDS+LLPPGS+L    +MYKV+TPF +A ++ L +     +P P  R  
Sbjct: 121 LFDLDIISQGFDDSLLLPPGSVLTGNREMYKVFTPFSRAFVKRLHEGLPECVPAPKPRQG 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P++ +   + FDYP +A D  +F  GE+ ALH LR FC++ V  Y + R+IPA+ GTS+
Sbjct: 181 APLSKTPEIKPFDYPTEAFDSELFAAGEKAALHQLRHFCQQPVTEYPDTRNIPAVDGTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GVLSPRQC +RL  E    L    S  F WLNELIWREFYRHL+  +P +C  
Sbjct: 241 LSVYLATGVLSPRQCLHRLLAEHPRGL--DDSNVFVWLNELIWREFYRHLLVAWPKLCRY 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           KPFI WT+ ++W      L+AW+QG TG+PI+DAAMRQ+N +GWMHNRLRMI ASFLVKD
Sbjct: 299 KPFIAWTDNVKWQPADKQLEAWQQGKTGYPIVDAAMRQMNQLGWMHNRLRMIVASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAAS+GND+ PYFRIFNPT QG+RFD +G F
Sbjct: 359 LLIDWREGERYFMSQLIDGDLAANNGGWQWAASSGNDAAPYFRIFNPTTQGERFDKEGEF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL +VP ++IH PH W D   ++L+YP P+VDHK+A   TL  + AA+KQS
Sbjct: 419 IRKWLPELKDVPVKHIHQPHIWADNVGVALDYPQPVVDHKEARKRTLEAFEAARKQS 475


>gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
           PB1/+]
 gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+]
          Length = 487

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R + C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKTRHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLESADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|91209744|ref|YP_539730.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89]
 gi|91071318|gb|ABE06199.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89]
          Length = 472

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQMCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P  R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKFRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|315299251|gb|EFU58505.1| FAD binding domain of DNA photolyase [Escherichia coli MS 16-3]
          Length = 472

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 248/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + R+T LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+T F+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTSFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIEPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E   +L         WLNELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQVLEGGPGSV--WLNELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W +K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAEKTGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|170023409|ref|YP_001719914.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
           YPIII]
 gi|169749943|gb|ACA67461.1| Deoxyribodipyrimidine photo-lyase [Yersinia pseudotuberculosis
           YPIII]
          Length = 487

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWATHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R + C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|324114816|gb|EGC08784.1| DNA photolyase [Escherichia fergusonii B253]
          Length = 472

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 248/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 -RRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+  +  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SLDPAPSITL-NYPRQSFDTAHFPVEEKAVIAQLRQFCQSGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM ++PS+C  +
Sbjct: 239 SASLATGRLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYHPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  AKK +
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAVYEEAKKGA 472


>gi|51597229|ref|YP_071420.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
           32953]
 gi|51590511|emb|CAH22151.1| putative deoxyribodipyrimidine photolyase [Yersinia
           pseudotuberculosis IP 32953]
          Length = 487

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R + C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|167552876|ref|ZP_02346627.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205322586|gb|EDZ10425.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 473

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|188534445|ref|YP_001908242.1| deoxyribodipyrimidine photolyase [Erwinia tasmaniensis Et1/99]
 gi|188029487|emb|CAO97364.1| Deoxyribodipyrimidine photo-lyase [Erwinia tasmaniensis Et1/99]
          Length = 477

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 273/477 (57%), Positives = 349/477 (73%), Gaps = 5/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  AKVIA+FIATPEQWR H ++ +Q+ FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNHALYAACRSQQAKVIALFIATPEQWRAHHMAPKQAEFIWQSLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ KGI     QC +FD S+  L ++C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 61  DVQQSLAAKGIALHVAQCDDFDASVPLLQAFCREHRVDRLFYNYQYEVNERQRDAAMEQA 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L +  V+ + FDDS+LLPPGS+L    +MYKV+TPF KA ++ L Q     LP P +R  
Sbjct: 121 LFEDDVVAQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPDVRQG 180

Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G +   ++    F+YP + IDP +FP GE+ A+  LR+FC++ V  Y ++RD+PA  GTS
Sbjct: 181 GAIEAGADPLEPFNYPREDIDPSLFPSGEKAAIARLREFCQQAVTDYPDKRDLPASDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L   +   F WLNELIWREFYRHL+  +P++C 
Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHSGALEDAR--VFVWLNELIWREFYRHLLVAFPALCR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF  WT  ++W +    L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 299 HQPFTRWTRNVKWREAPQHLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLLVDWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 359 DLLVDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FIR WLPEL +VP +YIH PH W  KN  +L+YP P+VDHK+A   TL+ + AA+K+
Sbjct: 419 FIRRWLPELRDVPAEYIHQPHQWARKNQQTLDYPQPLVDHKQARQQTLDAFEAARKK 475


>gi|168238850|ref|ZP_02663908.1| deoxyribodipyrimidine photo-lyase (DNA photolyase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194736598|ref|YP_002113816.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712100|gb|ACF91321.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288345|gb|EDY27726.1| deoxyribodipyrimidine photo-lyase (DNA photolyase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 473

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 252/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  QRD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESQRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|215485731|ref|YP_002328162.1| deoxyribodipyrimidine photolyase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312965140|ref|ZP_07779377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75]
 gi|215263803|emb|CAS08139.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312290231|gb|EFR18114.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75]
          Length = 472

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 249/476 (52%), Positives = 329/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I   L 
Sbjct: 1   MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAVHNVSPRQAELINTQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD   E+ 
Sbjct: 61  ALQNALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDD V+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q  D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIDPAPSITL-NYPRQPFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHL+ +YPS+C  +
Sbjct: 239 SASLATGGLSPRQCLHRLLAEQPQALDGGAGSI--WLNELIWREFYRHLITYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +S  L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 417 RQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEARKGA 472


>gi|218549732|ref|YP_002383523.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ATCC
           35469]
 gi|218357273|emb|CAQ89908.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia
           fergusonii ATCC 35469]
          Length = 472

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 331/476 (69%), Gaps = 5/476 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC NS A+V+A+ IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALNIATPRQWAAHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L++KGI   + +  +F  S+E +   C + RVT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLRIALAEKGIPLLFREVDDFVASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +  +      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIETAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGRLSPRQCLHRLLAEQPQALDGGAGSV--WLNELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   L+AW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSSGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FI
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLPEL +VP + +H P  W  K  ++L+YP PIVDHK+A   TL  Y  AKK +
Sbjct: 417 RQWLPELRDVPGKAVHEPWKWAQKAGVTLDYPQPIVDHKEARLRTLAAYEEAKKGA 472


>gi|238797755|ref|ZP_04641249.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
 gi|238718396|gb|EEQ10218.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
          Length = 481

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 281/477 (58%), Positives = 349/477 (73%), Gaps = 2/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R+DLRITDN AL+AAC +  AKV+AVFIATP+QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRHDLRITDNLALHAACQDEQAKVMAVFIATPKQWAAHDMAPRQAAFLRQNLH 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC++F DSI WL  +C QQ+V  LFYN+QYE+NE+RRD+    +
Sbjct: 61  LLQAALADRGIPLHYHQCADFQDSILWLADFCQQQQVDALFYNQQYELNEMRRDEAFTVQ 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R + C SF DSVLLPPGS+     +MYK++TPFR+A IQ L+ +D RS+P P  R  
Sbjct: 121 LNRRSIACHSFHDSVLLPPGSVQTGNNEMYKIFTPFRRAFIQRLMMSDCRSVPAPKARQN 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                      FDYP Q++D  +FP GE+ AL  LR FC+E+V  Y++QRD+PA+ GTS 
Sbjct: 181 AGAITLTPLEPFDYPQQSVDSQLFPAGEEAALQRLRSFCREQVQDYLQQRDLPAVAGTSG 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC+NRL+ E  DLL    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCFNRLRAECPDLLESSDSGAFTWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PF+ WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKD
Sbjct: 301 HPFMGWTDAVRWNHSEPQLIAWQQGLTGYPIVDAAMRQLNETGWMHNRLRMITASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +GTF
Sbjct: 361 LLIDWRLGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGTF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP + IH P  W  +    LNYP P+VDHK A   TL  + AAK+  
Sbjct: 421 IRRWLPELAAVPDRDIHQPWRWAQQQQQHLNYPPPLVDHKLARLATLAAFDAAKRDG 477


>gi|168240558|ref|ZP_02665490.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448497|ref|YP_002044740.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194406801|gb|ACF67020.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339950|gb|EDZ26714.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 473

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|310767008|gb|ADP11958.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia sp.
           Ejp617]
          Length = 477

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 274/475 (57%), Positives = 347/475 (73%), Gaps = 5/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  A VIA+FIATP QWR H ++ +Q+ FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNHALYAACRSKQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ KGIV    QC +F  S+  L  +C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 61  DVQQSLAAKGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 120

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQH  V+ + FDDS+LLPPGS+L    +MYKV+TPF KA ++ L Q     LP PA+R  
Sbjct: 121 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 180

Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G V   ++     DYP + ID  +FP GE+ A+  LR+FC++ V  Y ++R++PA  GTS
Sbjct: 181 GAVEARADSLVALDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L   +   F WLNELIWREFYRHL+  +P++C 
Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPGALEDSR--VFVWLNELIWREFYRHLLVAFPALCR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF+ WT+ ++W  DS  L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 299 HQPFMRWTKSVKWRVDSQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 359 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIRHWLPEL +VP +YIH PH W  KN  +L+YP P+VDHK A   TL+ + AAK
Sbjct: 419 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAK 473


>gi|238911653|ref|ZP_04655490.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 473

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 335/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SI+ + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIKTVKNICRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  QRD PA++GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESQRDFPAVEGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|168230599|ref|ZP_02655657.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194472292|ref|ZP_03078276.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194458656|gb|EDX47495.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205334675|gb|EDZ21439.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 473

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  QRD PA++GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYASQRDFPAVEGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVMLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|204929858|ref|ZP_03220879.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320852|gb|EDZ06053.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 473

 Score =  521 bits (1343), Expect = e-146,   Method: Composition-based stats.
 Identities = 253/476 (53%), Positives = 335/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  QRD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESQRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|197250843|ref|YP_002145681.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214546|gb|ACH51943.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 473

 Score =  521 bits (1343), Expect = e-146,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 335/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SI+ + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIKTVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|291616713|ref|YP_003519455.1| PhrB [Pantoea ananatis LMG 20103]
 gi|291151743|gb|ADD76327.1| PhrB [Pantoea ananatis LMG 20103]
          Length = 475

 Score =  521 bits (1342), Expect = e-146,   Method: Composition-based stats.
 Identities = 269/477 (56%), Positives = 335/477 (70%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC   DA+VIA+FIATP QW+QH ++ARQ  FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLD 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q SL+++GI   +HQC +F  SI++L  +C +Q+V KLFYN QYE+NE  RD   EKR
Sbjct: 61  MLQSSLAERGIPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKR 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L +  V+C+ FDDS+LLPPGSI     +MYKV+TPF KA ++ L Q     +P P  R  
Sbjct: 121 LHEANVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREG 180

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+        FDYP   ID  +FP GEQ A+  LR+F K+ V  Y +QRD+PA+  TS+
Sbjct: 181 TPLKEPKSLPPFDYPKADIDTSLFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDSTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YLS GVLSPRQC +R+  E    L      A  W+NELIWREFYRHL+  +P +C  
Sbjct: 241 LSVYLSTGVLSPRQCLHRILHEQPKALDSG--PAAVWINELIWREFYRHLIVAHPRLCKH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF+ WT  + W ++S    AWK G TG+PI+DAAMRQ+ TIGWMHNRLRMITASFLVKD
Sbjct: 299 QPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF+ QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G F
Sbjct: 359 LLIDWREGERYFIQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGEF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR +LPEL  VP   IH PH W  KN+  L+YP PIV+HK A   TL+ +  AK  +
Sbjct: 419 IRRYLPELKEVPDSDIHQPHQWAQKNNKKLDYPAPIVEHKDARKKTLDAFERAKNAA 475


>gi|332160904|ref|YP_004297481.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604809|emb|CBY26307.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665134|gb|ADZ41778.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862934|emb|CBX73069.1| deoxyribodipyrimidine photo-lyase [Yersinia enterocolitica W22703]
          Length = 481

 Score =  521 bits (1342), Expect = e-146,   Method: Composition-based stats.
 Identities = 281/477 (58%), Positives = 341/477 (71%), Gaps = 2/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLR+TDN AL+ AC +  A VIAVFIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRVTDNLALHTACQDPQATVIAVFIATPAQWAAHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ + I   YHQC +F DSI WLD +C QQ+V  LFYN QYE+NE  RD+ L  +
Sbjct: 61  LLQDALAARAIPLHYHQCDDFKDSITWLDDFCQQQQVDALFYNHQYELNERMRDEALVVQ 120

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           + HR I C  F D+VLLPPGSIL    +MYKV+TPFR+A IQ L+ +D RS+P P  R T
Sbjct: 121 MGHRAIACHGFHDAVLLPPGSILTGNNEMYKVFTPFRRAFIQRLMMSDCRSVPAPKARTT 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             V PS     FDYP Q +D  +FP GE+ AL  LR+FC+E V  Y +QRD PA+ GTS 
Sbjct: 181 AAVIPSQPLAPFDYPQQPVDSQLFPAGEEAALQRLRRFCREDVQDYQQQRDFPAVAGTSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC NRL+ E  ++L     GAF WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPEVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 HPFIGWTDAVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQDGVF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++   SL+YP P+V+HK+A   TL  + AAK+  
Sbjct: 421 IRRWLPELAAVPDSDIHQPWRWAERQQQSLDYPPPLVEHKQARLATLAAFEAAKRDG 477


>gi|153947154|ref|YP_001400093.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
           31758]
 gi|152958649|gb|ABS46110.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
           31758]
          Length = 487

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 277/477 (58%), Positives = 344/477 (72%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHVMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +LS +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALSARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R + C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++    L+YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQQQHLDYPVPLVDHKQARLATLAAFEAAKRDS 475


>gi|259909092|ref|YP_002649448.1| deoxyribodipyrimidine photolyase [Erwinia pyrifoliae Ep1/96]
 gi|224964714|emb|CAX56231.1| Deoxyribodipyrimidine photo-lyase [Erwinia pyrifoliae Ep1/96]
          Length = 477

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 274/475 (57%), Positives = 347/475 (73%), Gaps = 5/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN ALYAAC +  A VIA+FIATP QWR H ++ +Q+ FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNHALYAACRSEQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            VQ+SL+ +GIV    QC +F  S+  L  +C + RV +LFYN QYE+NE +RD  +E+ 
Sbjct: 61  DVQQSLAARGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERT 120

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQH  V+ + FDDS+LLPPGS+L    +MYKV+TPF KA ++ L Q     LP PA+R  
Sbjct: 121 LQHDNVVVQGFDDSLLLPPGSVLTGNREMYKVFTPFSKAFVKRLQQGLPECLPAPAVRPG 180

Query: 186 GPVTP-SNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           G V   +     FDYP + ID  +FP GE+ A+  LR+FC++ V  Y ++R++PA  GTS
Sbjct: 181 GAVEARAGSLVAFDYPREDIDAGLFPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ GVLSPRQC +RL ++    L   +   F WLNELIWREFYRHL+  +P++C 
Sbjct: 241 RLSVYLATGVLSPRQCLHRLLKQHPGALEDSR--VFVWLNELIWREFYRHLLVAFPALCR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF+ WT+ ++W  DS  L AW+QG TG+PI+DAAMRQLN++GWMHNRLRMITASFLVK
Sbjct: 299 HQPFMRWTKSVKWRVDSQQLTAWQQGITGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G 
Sbjct: 359 DLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIRHWLPEL +VP +YIH PH W  KN  +L+YP P+VDHK A   TL+ + AAK
Sbjct: 419 FIRHWLPELRHVPPEYIHQPHQWARKNRQTLDYPQPLVDHKLARQQTLDAFEAAK 473


>gi|198244498|ref|YP_002214691.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197939014|gb|ACH76347.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326622447|gb|EGE28792.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 473

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 252/476 (52%), Positives = 335/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ HG++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHGMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEHPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|194444359|ref|YP_002039947.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403022|gb|ACF63244.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 473

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAELFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|322615844|gb|EFY12762.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621240|gb|EFY18097.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623660|gb|EFY20498.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628932|gb|EFY25712.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634912|gb|EFY31642.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636560|gb|EFY33264.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641813|gb|EFY38445.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647801|gb|EFY44281.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651869|gb|EFY48238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652634|gb|EFY48983.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658442|gb|EFY54705.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664955|gb|EFY61146.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668375|gb|EFY64531.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670537|gb|EFY66670.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675277|gb|EFY71353.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679703|gb|EFY75744.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684821|gb|EFY80820.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323200590|gb|EFZ85665.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202262|gb|EFZ87310.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205471|gb|EFZ90437.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213490|gb|EFZ98283.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215324|gb|EGA00069.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220237|gb|EGA04693.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323231025|gb|EGA15141.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234142|gb|EGA18231.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238163|gb|EGA22221.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243598|gb|EGA27616.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247378|gb|EGA31337.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251366|gb|EGA35238.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258495|gb|EGA42167.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263118|gb|EGA46658.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264721|gb|EGA48223.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272232|gb|EGA55644.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 473

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 252/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F  SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMIWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|200390561|ref|ZP_03217172.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603006|gb|EDZ01552.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 473

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVRALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADGYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|327393138|dbj|BAK10560.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355]
          Length = 475

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 270/477 (56%), Positives = 335/477 (70%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC   DA+VIA+FIATP QW+QH ++ARQ  FI+ SL 
Sbjct: 1   MTTHLVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLD 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q SL+++G    +HQC +F  SI++L  +C +Q+V KLFYN QYE+NE  RD   EKR
Sbjct: 61  MLQSSLAERGFPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKR 120

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L +  V+C+ FDDS+LLPPGSI     +MYKV+TPF KA ++ L Q     +P P  R  
Sbjct: 121 LHEANVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREG 180

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+        FDYP   ID  +FP GEQ A+  LR+F K+ V  Y +QRD+PA+  TS+
Sbjct: 181 APLKEPKSLPPFDYPKADIDTSLFPPGEQAAVKRLREFAKQAVLDYAKQRDLPALDSTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YLS GVLSPRQC +R+  E    L    S A  W+NELIWREFYRHL+  +P +C  
Sbjct: 241 LSVYLSTGVLSPRQCLHRILHEQPKAL--ESSPAAVWINELIWREFYRHLIVAHPRLCKH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF+ WT  + W ++S    AWK G TG+PI+DAAMRQ+ TIGWMHNRLRMITASFLVKD
Sbjct: 299 QPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGWMHNRLRMITASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G F
Sbjct: 359 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKEGEF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR +LPEL  VP   IH PH W  KN+  L+YP PIV+HK A   TL+ +  AK  +
Sbjct: 419 IRRYLPELKEVPDSDIHQPHQWAQKNNKKLDYPAPIVEHKDARKKTLDAFERAKNAA 475


>gi|16764079|ref|NP_459694.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992982|ref|ZP_02574077.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262487|ref|ZP_03162561.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|207856166|ref|YP_002242817.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|20141633|sp|P25078|PHR_SALTY RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|16419217|gb|AAL19653.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|197240742|gb|EDY23362.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205328867|gb|EDZ15631.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|206707969|emb|CAR32258.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261245973|emb|CBG23775.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992447|gb|ACY87332.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157301|emb|CBW16789.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911734|dbj|BAJ35708.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084977|emb|CBY94766.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321226285|gb|EFX51336.1| Deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129020|gb|ADX16450.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987646|gb|AEF06629.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 473

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|168467738|ref|ZP_02701575.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195629172|gb|EDX48540.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 473

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|168264324|ref|ZP_02686297.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205347157|gb|EDZ33788.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 473

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAELPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|283784466|ref|YP_003364331.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168]
 gi|282947920|emb|CBG87482.1| deoxyribodipyrimidine photolyase [Citrobacter rodentium ICC168]
          Length = 472

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 247/475 (52%), Positives = 320/475 (67%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW R DLR+ DN AL AAC +S A+V+A++I+TP QW +H +S RQ+ FI A L 
Sbjct: 1   MSTHLVWFRCDLRLHDNLALAAACRSSTARVLALYISTPAQWTKHTMSPRQAAFIAAQLE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+ KGI   + + ++FD S+E + + C    VT LFYN QYE+NE  RD  +EK 
Sbjct: 61  ALQQALADKGIPLLFEETADFDASVETVKAVCESHDVTHLFYNYQYELNERERDAAVEKA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+ +VIC+ FDDSV+LPPGS++    +MYKV+TPF+ A ++ L +        P  R   
Sbjct: 121 LR-KVICEGFDDSVILPPGSVMTGNHEMYKVFTPFKNAWLKRLKEGMPECAAAPKARDRA 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            V P           Q    +FP+ E+  +  LR+FC++    Y  QRD PA  GTS+LS
Sbjct: 180 AVAPQQKITLNYPQQQFDRTLFPVDEKAVIAQLRQFCQQGAGEYEHQRDFPATDGTSRLS 239

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM   P++C  +P
Sbjct: 240 ASLATGGLSPRQCLHRLLAEHPQALDGGAGSV--WLNELIWREFYRHLMTRNPALCKHRP 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           FI WT+++ W  ++   QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDLL
Sbjct: 298 FIAWTDRVAWRDNAAHFQAWQEGKTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  G FIR
Sbjct: 358 IDWRKGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            W+PEL  VP + IH P  W +   ++L+YP P+VDHK+A   TL  Y AA+K +
Sbjct: 418 RWIPELREVPGKAIHEPWKWANSVGVTLSYPQPVVDHKQARATTLAAYEAARKGA 472


>gi|283834013|ref|ZP_06353754.1| deoxyribodipyrimidine photolyase [Citrobacter youngae ATCC 29220]
 gi|291070150|gb|EFE08259.1| deoxyribodipyrimidine photolyase [Citrobacter youngae ATCC 29220]
          Length = 472

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 251/475 (52%), Positives = 328/475 (69%), Gaps = 4/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC +  A+V+A++IATP QW+ H ++ RQ+ F+ A L 
Sbjct: 1   MTTHLVWFRRDLRLHDNLALAAACRDRSAQVLALYIATPGQWQAHDMAPRQAAFVSAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F  S++ +   CLQ  V++LFYN QYEINE +RD  +EK 
Sbjct: 61  TLQTALAEKGIPLLFHEVADFAASVDTVKRVCLQHGVSRLFYNYQYEINERQRDANVEKS 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ +       +  P  R +G
Sbjct: 121 LPQ-VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRIKDGIPECVSAPKERASG 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +          YP Q  D  + P  E+ A+  LR+FC++    Y ++RD PAI GTS+L
Sbjct: 180 ALDAPLTAITLSYPQQEFDAQWFPADEKLAIAQLRQFCQQAAGEYEQRRDFPAINGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC NRL  E    L         WLNELIWREFYRHLM ++P++C  +
Sbjct: 240 SASLATGGLSPRQCLNRLLAEQPQALEGGAGSV--WLNELIWREFYRHLMTYHPALCRHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WTE+++W  +   LQAW+ G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDL
Sbjct: 298 PFIRWTERVQWQNNPAHLQAWQTGKTGYPIVDAAMRQLNATGWMHNRLRMIAASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  G FI
Sbjct: 358 LIDWRKGEQYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R WLPEL NVP + IH P SW +    +LNYP PIVDHK+A   TL  Y AA+K+
Sbjct: 418 RQWLPELRNVPGKAIHNPWSWAENAQATLNYPRPIVDHKQARLATLAAYEAARKE 472


>gi|238756042|ref|ZP_04617366.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
 gi|238705767|gb|EEP98160.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
          Length = 479

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 281/474 (59%), Positives = 352/474 (74%), Gaps = 2/474 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL+W R+DLR+TDN AL+AAC +  A+VIAVFIATP+QW  H +S +Q+ FI  +L 
Sbjct: 1   MATHLIWFRHDLRVTDNLALHAACQDPQAQVIAVFIATPQQWAAHNMSPKQATFIQQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+ + I   YHQC +FD S  WL ++  +++V KLFYN QYE+NE RRD  LE  
Sbjct: 61  CLQQALALRSIPLYYHQCHDFDASRRWLAAFSREKQVDKLFYNHQYELNERRRDAELEDS 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+ +V C+ + DS+LL PGS+L     MYK+YTPFR+A IQ L+ +D + +P P  R   
Sbjct: 121 LRGQVACQGYHDSLLLAPGSVLTGNGDMYKIYTPFRRAFIQRLLISDCQCVPAPRAR-GE 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           P+T       FDYP + +D  +FP GE+ AL  LR+FC+E V  Y +QRD+PAI GTSQL
Sbjct: 180 PITTIQPLAPFDYPTENVDSVLFPAGEEAALQRLRQFCREPVRDYHQQRDLPAIAGTSQL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LSPRQC+NRL+ E  D+L +P SGAFSWLNELIWREFYRHL+  YP +C  +
Sbjct: 240 SPYLAIGQLSPRQCFNRLRVECPDMLEQPDSGAFSWLNELIWREFYRHLLVAYPRLCQHR 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ WN D+  LQAW+QG TG+PI+DAAMRQ+N  GWMHNRLRMITASFLVKDL
Sbjct: 300 PFIGWTDEVRWNTDAERLQAWQQGMTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR GE YFMS+LLDGDLA+NNGGWQWAASTG DS PYFRIFNPT QG+RFD  G FI
Sbjct: 360 LVDWRQGERYFMSKLLDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDKHGVFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           RHWLPEL  VP   IH P  W  +    L+YPLP+VDHK+A   TL  + AA++
Sbjct: 420 RHWLPELAAVPASDIHQPWRWAQRQQQHLDYPLPMVDHKQARLDTLAAFEAARR 473


>gi|108808420|ref|YP_652336.1| deoxyribodipyrimidine photolyase [Yersinia pestis Antiqua]
 gi|167398528|ref|ZP_02304052.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|108780333|gb|ABG14391.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Antiqua]
 gi|167051032|gb|EDR62440.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
          Length = 485

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 6/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS HLVW RNDLR+TDN AL+AAC +  A VIAVFIATP QW  HG++ RQ+ F+  +L 
Sbjct: 1   MSTHLVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ +GI   YHQC +F  S  WL  +C QQ+V  LFY++QYE+NE  RD  L  +
Sbjct: 61  HLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQ 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R + C+SF DSVLL PG++L    +MYKV+TPFR+A IQ L+ +D   +P P  R  
Sbjct: 121 LSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV  S +P  FDYP Q++D  +FP GE  AL  LR+FC+E+V  Y + RD+PA+ GTS 
Sbjct: 181 PPVLLSPLP--FDYPQQSVDSQLFPAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTSC 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL +GVLSPRQC+NRL  E  ++L    SGAF+WLNELIWREFYRHL+  YP +C  
Sbjct: 239 LSPYLVLGVLSPRQCFNRLWAESPEMLENADSGAFTWLNELIWREFYRHLLVAYPRLCQH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PFI WT+ + WN+    L+AW+QG TG+PI+DAAMRQ+N  GWMHNRLRMI+ASFLVKD
Sbjct: 299 HPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMISASFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 359 LLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P  W ++  L  +YP+P+VDHK+A   TL  + AAK+ S
Sbjct: 419 IRRWLPELAAVPDSDIHQPWRWAERQHL--DYPVPLVDHKQARLATLAAFEAAKRDS 473


>gi|238790472|ref|ZP_04634241.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC
           33641]
 gi|238721416|gb|EEQ13087.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC
           33641]
          Length = 481

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 277/477 (58%), Positives = 336/477 (70%), Gaps = 2/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLR+TDN AL+AAC +  A VIAVF+ATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRLTDNLALHAACQDPQATVIAVFVATPTQWATHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q +L+ + I   YHQC +F  SI+WLD +C Q +V  LFYN+QYE+NE  RD  L  R
Sbjct: 61  QLQTALAARAIPLHYHQCDDFQGSIDWLDDFCQQHQVNVLFYNQQYELNEQLRDNALVAR 120

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R + C SF DSVLLPPGS+L    +MYKV+TPFR+A IQ L+ +D  S+P P  R  
Sbjct: 121 LNGRDIACNSFHDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLIMSDCGSVPAPKARSA 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                      FDYP Q +D  +FP GE+ AL  LR FC+E+V  Y +QRD PAI  TS 
Sbjct: 181 SMEIVPQPLTPFDYPQQPLDNVLFPAGEEAALQRLRTFCREQVQDYQQQRDFPAIAATSC 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G+LSPRQC NRL+ E  ++L     GAF WLNELIWREFYRHL+  YP +C  
Sbjct: 241 LSPYLALGILSPRQCVNRLRAECPEVLENADGGAFIWLNELIWREFYRHLLVAYPRLCQH 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASFLVKD
Sbjct: 301 RPFIGWTDAVVWNHSQQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVKD 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G F
Sbjct: 361 LLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGVF 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP   IH P +W  +    L+YPLP+VDHK A   TL  + AAK+  
Sbjct: 421 IRRWLPELAMVPDSDIHQPWNWAQRQQQPLDYPLPLVDHKAARLATLAAFDAAKRDG 477


>gi|168820166|ref|ZP_02832166.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343136|gb|EDZ29900.1| deoxyribodipyrimidine photo-lyase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 473

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 333/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT ++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTIRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|16759651|ref|NP_455268.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142576|ref|NP_805918.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163180|ref|ZP_03348890.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213865098|ref|ZP_03387217.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289826651|ref|ZP_06545657.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25291449|pir||AI0587 deoxyribodipyrimidine photolyase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501943|emb|CAD05171.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138207|gb|AAO69778.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 473

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q +RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|56414171|ref|YP_151246.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363094|ref|YP_002142731.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128428|gb|AAV77934.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094571|emb|CAR60092.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 473

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 250/476 (52%), Positives = 332/476 (69%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DW +GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWWLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|205351986|ref|YP_002225787.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271767|emb|CAR36601.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627026|gb|EGE33369.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 473

 Score =  518 bits (1334), Expect = e-145,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 334/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGRAIHEPWRWAEKAGVVLDYPRPIVEHKQARISTLSAYEAARKGA 473


>gi|224582537|ref|YP_002636335.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224467064|gb|ACN44894.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322713765|gb|EFZ05336.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 473

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 251/476 (52%), Positives = 336/476 (70%), Gaps = 4/476 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + ++C Q  V+ LFYN QY+ NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNFCRQHDVSHLFYNYQYQFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 418 RQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 473


>gi|308186057|ref|YP_003930188.1| Deoxyribodipyrimidine photolyase [Pantoea vagans C9-1]
 gi|308056567|gb|ADO08739.1| Deoxyribodipyrimidine photolyase [Pantoea vagans C9-1]
          Length = 474

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 277/477 (58%), Positives = 345/477 (72%), Gaps = 5/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC +S AKVIA+F+ATPEQW+QH +S RQ+ FI+ASL+
Sbjct: 1   MTTHLVWLRNDLRINDNLALHAACRDSKAKVIALFLATPEQWQQHDMSPRQAAFIHASLV 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +VQ +L+++GI   Y  C+ F DSI+ L  +C + +V +LFYN QYE+NE +RD   EKR
Sbjct: 61  EVQNALAERGIALHYQACNAFSDSIDALAEFCDKHQVDQLFYNYQYEVNERQRDAEAEKR 120

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    VIC+ FDDS+LLPPGS+ +    MYKV+TPF KA ++ L Q+    +P P  R  
Sbjct: 121 LDDTGVICQGFDDSLLLPPGSVQSGDRSMYKVFTPFSKAFVRRLQQSLPECVPAPKPRDG 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+  + IP  FD P +A D  +FP GE  AL  LR F  + +  Y  +RD+PA+  TS+
Sbjct: 181 APLKTTPIP-AFDCPTEAFDEDLFPAGEAAALKRLRHFATQPIIDYPAKRDLPALDATSR 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YLS GVLSPRQC +R+  E  D L    S AF+WLNELIWREFYRHL+  YP++C  
Sbjct: 240 LSVYLSTGVLSPRQCLHRVLHEHPDAL--DNSRAFTWLNELIWREFYRHLLVAYPALCRH 297

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           KPFI WT  +EW ++     AWK G TG+PI+DAAMRQ+  +GWMHNRLRMITASFLVKD
Sbjct: 298 KPFIDWTRNVEWQREDAHFDAWKAGKTGYPIVDAAMRQMKALGWMHNRLRMITASFLVKD 357

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG DS PYFRIFNPT QG+RFD QG F
Sbjct: 358 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDEQGEF 417

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IRH+LPEL +VP  +IH PH W +KN+  L+YP PIVDHK A   TL+ +  AK  +
Sbjct: 418 IRHYLPELADVPDSHIHQPHVWAEKNNRKLDYPAPIVDHKAARKKTLDAFERAKSAA 474


>gi|311280415|ref|YP_003942646.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1]
 gi|308749610|gb|ADO49362.1| Deoxyribodipyrimidine photo-lyase [Enterobacter cloacae SCF1]
          Length = 471

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 252/474 (53%), Positives = 332/474 (70%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC +S AKV+A+FIATP QWRQH ++ RQ+ +I A L 
Sbjct: 1   MTTHLVWFRADLRLHDNLALAAACRDSYAKVLALFIATPGQWRQHRMAPRQAAYIQAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+ KGI     +  +F  S + +   C + +V+ L+YN QYE+NE RRD  +EK 
Sbjct: 61  DLQRNLADKGIPLLLREAEDFAASAQVIRQVCNEHKVSSLYYNYQYELNERRRDARVEKA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+L PGS++    QMYKV+TPF+ A ++ L +     +  P++R  G
Sbjct: 121 LKD-VLCQGFDDSVMLAPGSVMTGDRQMYKVFTPFKNAYLKRLKEGLPECVRAPSVREEG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +      +  +YP    DP +FP  E++A+  LR+FC+++   Y ++RD PA++GTS+L
Sbjct: 180 AIKVCQPLKL-NYPQTPFDPDLFPADEKSAIARLRQFCQQQAAEYEQKRDFPAMEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L++GVLSPRQC  RL  E    L         WLNELIWREFYRHLM F+P +C  K
Sbjct: 239 SCCLTVGVLSPRQCLRRLLAECSGALEGGAGSV--WLNELIWREFYRHLMTFHPELCRFK 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ ++W +D   L AW++G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDL
Sbjct: 297 PFIKWTDNVKWCEDHTRLNAWQRGQTGYPIVDAAMRQLNDTGWMHNRLRMIVASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI
Sbjct: 357 LIDWREGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGEFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL +VP + +H+P  W DK   +++YP PIVDH +A   TL  Y AA+K
Sbjct: 417 RRWLPELKDVPDKALHSPWQWADKEGGTIDYPRPIVDHPQARLETLAAYEAARK 470


>gi|317047331|ref|YP_004114979.1| deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b]
 gi|316948948|gb|ADU68423.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b]
          Length = 475

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 264/477 (55%), Positives = 332/477 (69%), Gaps = 4/477 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC +  A+V+A+FIATP QW+QH ++ +Q+ FIY SL 
Sbjct: 1   MTTHLVWLRNDLRINDNSALHAACRDPGARVLALFIATPGQWQQHHMAPKQAAFIYQSLC 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+++GI   Y QC +F  S+E L  +C QQ+V +LFYN QYEINE +RD   EKR
Sbjct: 61  LLQAALAERGIPLHYQQCDDFAASLEVLADFCQQQQVDQLFYNYQYEINERQRDAAAEKR 120

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    VIC+ FDDS+LL PGS+      M+KV+TPF KA ++ L Q        P  R  
Sbjct: 121 LDDQGVICQGFDDSLLLAPGSVQTGNHTMFKVFTPFSKAFVRRLHQGLPECHMAPRARQG 180

Query: 186 GPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+        FDYP +  D  +FP GE+ AL  LR F ++ V  Y  +RD PA+ GTS+
Sbjct: 181 APINVEKKIPPFDYPMEDFDVTLFPAGEEAALQQLRHFAQQSVVDYAAERDKPAVDGTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GVLSPRQC +R+ ++  D L      AF WLNELIWREFYRHLM  +P++C  
Sbjct: 241 LSVYLATGVLSPRQCLHRILKQHPDALDGGL--AFVWLNELIWREFYRHLMVAFPALCKH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF+ WT  + W K+   L AW+QG TG+PI+DAAMRQLN +GWMHNRLRMI A FLVKD
Sbjct: 299 QPFVGWTRHVRWQKNQRHLTAWQQGKTGYPIVDAAMRQLNALGWMHNRLRMIVACFLVKD 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DW  GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFDPQG F
Sbjct: 359 LLIDWHDGERYFMQQLMDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDPQGAF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL  VP  +IH PH W  KN+++L YP PIV+HK A   TL+ +  A+  +
Sbjct: 419 IRQWLPELAVVPDAHIHQPHVWAQKNNMTLAYPAPIVEHKDARKKTLDAFERARSAA 475


>gi|304395693|ref|ZP_07377576.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB]
 gi|304356987|gb|EFM21351.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB]
          Length = 474

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 274/477 (57%), Positives = 345/477 (72%), Gaps = 5/477 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLRNDLRI DN AL+AAC +SDAKVIA++++TPEQW+QH +S +Q+ FI+ASLL
Sbjct: 1   MTTHLVWLRNDLRINDNLALHAACRDSDAKVIALYLSTPEQWQQHDMSPKQAAFIHASLL 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +VQ +L+++GI   Y  C  F DSI+ L  +C +Q+V +LFYN QYE+NE +RD   EKR
Sbjct: 61  EVQSALAERGIPLHYQACHAFSDSIDALAEFCEKQKVDQLFYNYQYEVNERQRDARAEKR 120

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    VIC+ FDDS+LLPPGS+ +    MYKV+TPF KA ++ L Q+    +P P  R  
Sbjct: 121 LDDAGVICQGFDDSLLLPPGSVQSGDRSMYKVFTPFSKAFVRRLQQSLPECVPAPKPREG 180

Query: 186 GPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+  + IP  FDYP +A D  +FP GE  AL  LR F  + V  Y  +RD+PA+  TS+
Sbjct: 181 SPLKVTPIP-AFDYPTKAFDEDLFPAGEAAALKRLRHFATKPVIDYPAKRDLPALDATSR 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GVLSPRQC +R+  E  D L    S AF+WLNELIWREFYRHL+  YP++C  
Sbjct: 240 LSVYLATGVLSPRQCLHRVLHEHPDAL--DNSRAFTWLNELIWREFYRHLLVAYPALCRH 297

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PFI WT  +EW ++     AWK G TG+PI+DAAMRQ+  +GWMHNRLRMITASFLVKD
Sbjct: 298 QPFIDWTRNVEWQRNDAHFDAWKAGRTGYPIVDAAMRQMKALGWMHNRLRMITASFLVKD 357

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G F
Sbjct: 358 LLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDEKGDF 417

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IRH+LPEL +VP   IH PH W +K+   L+YP PIVDHK A   TL+ +  AK  +
Sbjct: 418 IRHYLPELADVPDSDIHQPHVWAEKHHKKLDYPAPIVDHKAARKKTLDAFERAKSAA 474


>gi|238793873|ref|ZP_04637493.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909]
 gi|238726776|gb|EEQ18310.1| Deoxyribodipyrimidine photo-lyase [Yersinia intermedia ATCC 29909]
          Length = 485

 Score =  514 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 284/482 (58%), Positives = 344/482 (71%), Gaps = 8/482 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL+W RNDLRITDN AL+AAC +  A VIA+FIATP QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLIWFRNDLRITDNLALHAACQDPQATVIALFIATPAQWAAHDMAPRQAAFLLQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+Q +L+ +GI   YHQC +F DSI WLD +C QQ+V  LF+N+QYE+NE  RD  L  R
Sbjct: 61  QLQHALAIRGIPLHYHQCDDFQDSIIWLDDFCQQQQVDALFFNQQYELNEQLRDGALVTR 120

Query: 127 LQHR------VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           L HR      + C  FDDSVLLPPGS+L    +MYKV+TPFR+A IQ L+ ++ R +P P
Sbjct: 121 LNHRQGAGHTITCHRFDDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLMMSECRCVPAP 180

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            IR +  V P  +   FDYP Q +D  +FP GE+ AL  LR FC+E+V  Y  QRD+PA+
Sbjct: 181 KIRDSVAVMPLPL-LPFDYPQQPVDNQLFPAGEEAALQRLRSFCREQVQDYQLQRDLPAV 239

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS LSPYL++GVLSPRQC+NRL  E   LL     GAF+WLNELIWREFYRHL+  YP
Sbjct: 240 AGTSCLSPYLALGVLSPRQCFNRLLAECPALLENTDGGAFTWLNELIWREFYRHLLVAYP 299

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +C  +PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+AS
Sbjct: 300 RLCRHRPFIDWTDGVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISAS 359

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVKDLL+DWR GE YFMSQLLDGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD
Sbjct: 360 FLVKDLLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 419

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
             G FIR WLPEL  VP   IH P  W  +    L+YPLP+VDHK A   TL  + AAK+
Sbjct: 420 SNGAFIRRWLPELAGVPDSDIHQPWRWAQRQQQHLDYPLPLVDHKLARLATLAAFEAAKR 479

Query: 480 QS 481
             
Sbjct: 480 DG 481


>gi|261341301|ref|ZP_05969159.1| deoxyribodipyrimidine photolyase [Enterobacter cancerogenus ATCC
           35316]
 gi|288316605|gb|EFC55543.1| deoxyribodipyrimidine photolyase [Enterobacter cancerogenus ATCC
           35316]
          Length = 470

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 262/475 (55%), Positives = 333/475 (70%), Gaps = 6/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC   DA+V+A+FIATPEQW+QH ++ RQ+ ++ A L 
Sbjct: 1   MPTHLVWFRADLRVHDNIALAAACRAKDARVLALFIATPEQWQQHDMAPRQAAYLCAHLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+SL +KGI   Y + S+F   ++ + + C +  VT LFYN QYE NE +RD+ LE R
Sbjct: 61  ELQRSLGEKGIPLIYKEVSDFSAQLQAVQAICDEHDVTHLFYNYQYEFNEQQRDRQLENR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V+C+ FDDSV+LPPGS++    +MYKV+TPF+ A I+ L +A    +  PA R  G
Sbjct: 121 L-DTVVCQGFDDSVMLPPGSVMTGNHEMYKVFTPFKNAFIKRLKEALPECVAAPAAR--G 177

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                     FDYP QA D  +FP  E+ A+  LR FCK+    Y  QRD PA++GTS+L
Sbjct: 178 EPLTDLPALTFDYPQQAFDETLFPADEKAAITQLRHFCKQGAAEYESQRDFPAVEGTSRL 237

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L++GVLSPRQC +RL  E    L         WLNEL WREFYRHLM ++P +C  +
Sbjct: 238 SACLALGVLSPRQCLHRLLAEQPQALDGAAGAV--WLNELTWREFYRHLMTYHPDLCKHR 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WTE ++W ++   L+AW+ G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 296 PFIRWTENVKWQQNDDRLRAWQNGTTGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 355

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 356 LIDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDADGEFI 415

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           RHWLPELN VP + IH P +W DK  ++L+YP P+VDHK+A   TL  Y AA+  
Sbjct: 416 RHWLPELNEVPAKAIHEPWTWADKQGVTLDYPRPLVDHKQARVATLAAYEAARNA 470


>gi|146310870|ref|YP_001175944.1| deoxyribodipyrimidine photolyase [Enterobacter sp. 638]
 gi|145317746|gb|ABP59893.1| deoxyribodipyrimidine photo-lyase type I [Enterobacter sp. 638]
          Length = 470

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 255/474 (53%), Positives = 325/474 (68%), Gaps = 6/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC +  A+V+AVFIATP+QWRQH ++ RQ+ ++ A L 
Sbjct: 1   MTTHLVWFRADLRLHDNIALAAACRSQHARVLAVFIATPDQWRQHDMAPRQAAYLRAHLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ L+++GI   Y + S+F      +   C Q  VT LFYN QYE NE +RD+ LEK 
Sbjct: 61  GLQQGLAERGIPLIYEEVSDFAAQSAKVQQLCQQHDVTHLFYNYQYEFNEQQRDRQLEKM 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V+C+ FDDSV+LPPGS++    +MYKV+TPF+ A ++ L +     +  PA+R   
Sbjct: 121 L-DGVVCQGFDDSVMLPPGSVMTGNHEMYKVFTPFKNAYVKRLKEGLPECVAAPAVREQK 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              P +    F+YP Q  D  +FP  E+ A+  LR FC+     Y  +RD P+I GTS+L
Sbjct: 180 --LPPSAEIEFNYPQQDFDAELFPASEKAAIAQLRHFCQHGAGEYEARRDFPSIDGTSRL 237

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L++GVLSPRQC +RL  E    L   +     WLNELIWREFYRHLM ++P +C  +
Sbjct: 238 SACLALGVLSPRQCLHRLLAEQPRALDGGEGSV--WLNELIWREFYRHLMTYHPDLCKHR 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+ ++W  D  LLQAW+ G TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKDL
Sbjct: 296 PFIRWTDNVQWQHDDVLLQAWQDGKTGYPIVDAAMRQLNETGWMHNRLRMIVASFLVKDL 355

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFM+QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 356 LIDWRAGERYFMAQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDATGEFI 415

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLP L  VP + +H P  W DK  ++L+YP PIVDHK+A   TL  Y AA+K
Sbjct: 416 RKWLPSLRGVPIKSLHEPWVWADKTGVTLDYPRPIVDHKQARVATLAAYEAARK 469


>gi|156934798|ref|YP_001438714.1| deoxyribodipyrimidine photolyase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533052|gb|ABU77878.1| hypothetical protein ESA_02638 [Cronobacter sakazakii ATCC BAA-894]
          Length = 473

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 256/475 (53%), Positives = 336/475 (70%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC + DA+VI +FIATP+QWR H ++ RQ+ FI+ +L 
Sbjct: 1   MTTHLVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIHQNLE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+++GI     +  +F  +++ L ++C +Q+V+ LFYN QYE+NE RRD  +E+R
Sbjct: 61  ALQQALAKRGIALFTREVPDFAAAVDALAAFCDEQQVSALFYNYQYELNEARRDAAVERR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+ RV C+ FDDSV+LPPGS++    +MYKV+TP+ +A ++ L +     +  P  R  G
Sbjct: 121 LEGRVACQGFDDSVMLPPGSVVTGNGEMYKVFTPYSRAFLRRLGEGLPACVSAPKPRHGG 180

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +T       FDYP +  D + FP GE+ AL  LR+FC+     Y E+RD PAI+GTS L
Sbjct: 181 AITDVPGLAPFDYPCETPDALLFPAGEEAALKRLREFCQTAAGDYPEKRDFPAIRGTSLL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL+IGVLSPRQC +RL  E    L         WLNELIWREFYRHL+  +P +C  +
Sbjct: 241 SAYLAIGVLSPRQCLHRLLTEHPRALEGGSGAV--WLNELIWREFYRHLIVAWPHLCRHQ 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT ++ W ++    QAW +G TG+PI+DAAMRQ+N  GWMHNRLRMITASFLVKDL
Sbjct: 299 PFIDWTARVAWQQNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR GE YFMSQL+DGD A+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI
Sbjct: 359 LVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDAEGEFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R W+PEL+++P + +H PH W  KN  +L YP PIVDHK+A   TL  Y AA+K+
Sbjct: 419 RRWVPELSHIPGKAVHEPHLWAKKNGKALRYPQPIVDHKQARVATLAAYEAARKE 473


>gi|296103357|ref|YP_003613503.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057816|gb|ADF62554.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 470

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 259/475 (54%), Positives = 331/475 (69%), Gaps = 6/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC +  A+V+A+FIATP QW+QH ++ RQ+ ++ + L 
Sbjct: 1   MPTHLVWFRADLRLHDNIALAAACRSEHARVLALFIATPGQWQQHDMAPRQAAYLCSHLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+SL++KGI   Y + S+F   +  +   C Q  VT LFYN QYE NE +RD+ LE+ 
Sbjct: 61  ALQRSLAEKGIPLIYKEVSDFTAQLSAVQEVCQQNDVTHLFYNYQYEFNEQQRDRELERI 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V C+ FDDSV+L PGS++    +MYKV+TPF+ A I+ L +A    +  P+ R  G
Sbjct: 121 LGD-VECQGFDDSVMLAPGSVMTGNREMYKVFTPFKNAFIKRLKEALPECVAAPSAR--G 177

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                     FDYP QA D  +FP  E+ A+  LR+FCK     Y  +RD PAI+GTS+L
Sbjct: 178 ECVNDLPELTFDYPQQAYDHSLFPADEKAAIAQLRQFCKTGAAAYEARRDFPAIEGTSRL 237

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L++GVLSPRQC +RL  E    L         WLNELIWREFYRHLM ++P +C  +
Sbjct: 238 SACLALGVLSPRQCLHRLLAEQPQALEGGAGSV--WLNELIWREFYRHLMTYHPELCKHR 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WTE ++W ++  LLQAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 296 PFIRWTENVQWQQNEMLLQAWQKGETGYPIVDAAMRQLNETGWMHNRLRMITASFLVKDL 355

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD  GTFI
Sbjct: 356 LIDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQKFDADGTFI 415

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           RHWLP L  VP + IH P +W DK  ++L+YP PIV+HK+A   TL  Y AA+K 
Sbjct: 416 RHWLPALKAVPAKAIHDPWAWADKQGVTLDYPRPIVEHKQARVATLAAYEAARKA 470


>gi|288936505|ref|YP_003440564.1| deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22]
 gi|288891214|gb|ADC59532.1| Deoxyribodipyrimidine photo-lyase [Klebsiella variicola At-22]
          Length = 480

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 255/474 (53%), Positives = 325/474 (68%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIVSHLH 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHTALAERGIPLWVEEAGDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  VIC+ FDDSVLLPPGS++  + +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LRD-VICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +P   +YP    D + F   E+ AL  LR FC++    Y  QRD PA++GTS+L
Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP L+ GVLSPRQC +RL  E    L        +WLNELIWREFYRHLM +YP +C G+
Sbjct: 239 SPCLATGVLSPRQCLHRLLTEHPAALDGGAGA--TWLNELIWREFYRHLMVYYPKLCKGR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+K+ W +D   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 297 PFIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+
Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFM 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL  VP + +H P +W DK  + L+YP PIVDHK+A   TL  + AA+K
Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 470


>gi|268592334|ref|ZP_06126555.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131]
 gi|291312119|gb|EFE52572.1| deoxyribodipyrimidine photolyase [Providencia rettgeri DSM 1131]
          Length = 480

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 266/473 (56%), Positives = 335/473 (70%), Gaps = 2/473 (0%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           HL+W RNDLR+TDNKAL +AC + +AKVIA+F ATP+QW+QH ++ RQ  FI+ +L+++Q
Sbjct: 8   HLIWFRNDLRVTDNKALSSACADPNAKVIALFTATPKQWQQHDMAERQISFIHQNLVELQ 67

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL++ GI       ++F D+ +W+  Y   Q+   LF+NRQYE NE +RD+ L  +  H
Sbjct: 68  NSLAELGIPLVCQTVNHFTDAAQWVLDYAKTQQADALFFNRQYEWNEKQRDEWLINQ-PH 126

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +   +FDD +LLPPGS+     +MY+VYTPFR+A +  L   D RSL  P  R      
Sbjct: 127 GLHIHAFDDYLLLPPGSVTTQKGEMYQVYTPFRRAFLTQLTVTDCRSLRAPEKRAAAINI 186

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
              +P F   P +     FP GE++AL  LR+FC  KV  Y   RDIP+I GTSQLSPYL
Sbjct: 187 DKALPLFPHQPIEDFQQ-FPAGEKSALTRLRQFCSLKVGDYQNDRDIPSIDGTSQLSPYL 245

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           ++GVLSPRQC+NRL+ E   +L  P SGAF+WLNEL+WREFY HL+  +P +C  +PFI 
Sbjct: 246 AVGVLSPRQCFNRLQAENPQVLDHPDSGAFTWLNELVWREFYSHLLVAFPRLCRHQPFIQ 305

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
           WT+ I WN  S    AWK G TG+PI+DAAMRQLNT GWMHNRLRMI ASFLVKDLL+DW
Sbjct: 306 WTQHIHWNDSSTDFAAWKTGQTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLVKDLLIDW 365

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE+YFMSQLLDG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FD QG FIRHWL
Sbjct: 366 RKGEKYFMSQLLDGSLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFDAQGAFIRHWL 425

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           PEL  VP +YIH PH W   ++ +LNYP PIVDHK+A   TL  + A K+ SL
Sbjct: 426 PELQQVPDKYIHTPHEWAVISNTALNYPEPIVDHKQARLATLAAFEAGKRNSL 478


>gi|206580444|ref|YP_002239663.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae 342]
 gi|206569502|gb|ACI11278.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae 342]
          Length = 480

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 255/474 (53%), Positives = 325/474 (68%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLH 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  VIC+ FDDSVLLPPGS++  + +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LRD-VICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +P   +YP    D + F   E+ AL  LR FC++    Y  QRD PA++GTS+L
Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP L+ GVLSPRQC +RL  E    L        +WLNELIWREFYRHLM +YP +C G+
Sbjct: 239 SPCLATGVLSPRQCLHRLLTEHPAALDGGAGA--TWLNELIWREFYRHLMVYYPKLCKGR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+K+ W +D   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 297 PFIAWTDKVAWREDDAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+
Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFM 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL  VP + +H P +W DK  + L+YP PIVDHK+A   TL  + AA+K
Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 470


>gi|152969283|ref|YP_001334392.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954132|gb|ABR76162.1| deoxyribodipyrimidine photolyase (photoreactivation) [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 480

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 255/474 (53%), Positives = 322/474 (67%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSVLLPPGS+L    +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 L-CDVICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +P   +YP    D + F   E+ AL  LR FC++    Y  QRD PA++GTS+L
Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP L+IGVLSPRQC +RL  E    L        +WLNELIWREFYRHLM +YP +C G+
Sbjct: 239 SPCLAIGVLSPRQCLHRLLTEHPAALDGGAGA--TWLNELIWREFYRHLMVYYPKLCKGR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF  WT+K+ W  +   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 297 PFTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI
Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL  VP + +H P +W DK  ++L+Y  PIVDHK+A   TL  + AA+K
Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQETLAAWEAARK 470


>gi|238893748|ref|YP_002918482.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae NTUH-K2044]
 gi|238546064|dbj|BAH62415.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 480

 Score =  504 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 254/474 (53%), Positives = 322/474 (67%), Gaps = 5/474 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q + + LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQASHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  VIC+ FDDSVLLPPGS+L    +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +P   +YP    D + F   E+ AL  LR FC++    Y  QRD PA++GTS+L
Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP L+IGVLSPRQC +RL  E    L        +WLNELIWREFYRHLM +YP +C G+
Sbjct: 239 SPCLAIGVLSPRQCLHRLLTEHPAALDGGAGA--TWLNELIWREFYRHLMVYYPKLCKGR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF  WT+K+ W  +   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 297 PFTAWTDKVAWRAEEAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI
Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R WLPEL  VP + +H P +W DK  ++L+Y  PIVDHK+A   TL  + AA+K
Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQETLAAWEAARK 470


>gi|183596981|ref|ZP_02958474.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827]
 gi|188023634|gb|EDU61674.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827]
          Length = 483

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 265/477 (55%), Positives = 334/477 (70%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             + HLVW RNDLR+TDNKAL +AC + DAKV+AVF ATPEQWR H +S+RQ  F++ +L
Sbjct: 4   KQACHLVWFRNDLRVTDNKALSSACADPDAKVLAVFTATPEQWRAHHLSSRQITFLHQNL 63

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + ++ SL++  I        +F  + +W+  +  QQ+V  L++N QYE+NE RRD+ L  
Sbjct: 64  IALRDSLAKLSIPLFCQTTPDFLSAAQWVLDFAQQQQVDHLYFNHQYELNEHRRDEWLIH 123

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q      +FDD++LLPP S+ N   +MY+VYTPFR+A I  LV  D RSLP P  R  
Sbjct: 124 HPQRAFRVHAFDDALLLPPKSVTNQKGEMYQVYTPFRRAFISQLVTTDFRSLPAPQPRGE 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                      F +    I P FP GE  A   LR+FC+ KV +Y + RDIP+I+GTS L
Sbjct: 184 ALAIDDLSLPLFAHHAVDIVPHFPAGESAARQQLRQFCRLKVQHYQQHRDIPSIEGTSLL 243

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IGVLSPRQC NRL  E+  L   P SGAF+WLNELIWREFY HL+  +P +C  +
Sbjct: 244 SPYLAIGVLSPRQCLNRLLAEYPPLFDSPDSGAFTWLNELIWREFYHHLLVAFPRLCRHQ 303

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT  I+WN      +AW+ G TG+PI+DAAMRQLNT GWMHNRLRMITASFLVKDL
Sbjct: 304 PFIEWTNHIQWNSSDADFKAWQLGQTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVKDL 363

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE+YFM QL+DG LA+NNGGWQW+ASTG D+ P+FRIFNPT QGK+FDPQG FI
Sbjct: 364 LIDWRLGEQYFMQQLIDGTLAANNGGWQWSASTGTDAQPWFRIFNPTTQGKKFDPQGAFI 423

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           R WLPEL +VP +YIH PH W + N ++L+YP PIVDHK+A   TL  + A K  S+
Sbjct: 424 RQWLPELQSVPDKYIHTPHEWAEANHVTLDYPAPIVDHKQARLATLAAFEAGKSDSV 480


>gi|197287042|ref|YP_002152914.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
 gi|194684529|emb|CAR46324.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
          Length = 476

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 250/475 (52%), Positives = 312/475 (65%), Gaps = 1/475 (0%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  VHLVW R+DLR+TDNKAL+ AC N+ A+V A+F  TP QW+ H ++  Q  FI+ +L
Sbjct: 3   SAPVHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDAL 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           L +  +L++  I         + D+ + +  YC Q +VT LF+N QY +NE  RDK + +
Sbjct: 63  LNLSHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVME 122

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L H      + D+V +PPG+++    +MYKV+TPFR A ++  +  D  SLP P IR  
Sbjct: 123 LLAHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAH 182

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                      F  P  +   MFP  EQ AL  L++FC E+V +Y + RDIPAI GTSQL
Sbjct: 183 QKAVSPLSAPLFALPISSTK-MFPASEQAALQRLKQFCYERVIHYAKWRDIPAIDGTSQL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG++S RQC+NRL +   D L    S  F W NEL+WREFY+HL+   PS+    
Sbjct: 242 SPYLAIGLVSVRQCFNRLYQTEPDFLENNHSSTFVWFNELVWREFYQHLIVANPSLSKQI 301

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F PWTE I W  D     AW QG TGFPIIDAAMRQLN  GWMHNRLRM+TASFLVKDL
Sbjct: 302 AFQPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVKDL 361

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRIFNPT QG++FDP G FI
Sbjct: 362 LIDWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFI 421

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           RHWLPEL +VP +YIH P  W  K    L+YP PIVDH KA    +  Y  AKK+
Sbjct: 422 RHWLPELADVPDRYIHTPSEWAIKTGHYLDYPQPIVDHAKARVTAIASYEEAKKR 476


>gi|227354710|ref|ZP_03839129.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906]
 gi|227165220|gb|EEI50045.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906]
          Length = 476

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 250/475 (52%), Positives = 312/475 (65%), Gaps = 1/475 (0%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  VHLVW R+DLR+TDNKAL+ AC N+ A+V A+F  TP QW+ H ++  Q  FI+ +L
Sbjct: 3   SAPVHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHDAL 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           L +  +L++  I         + D+ + +  YC Q +VT LF+N QY +NE  RDK + +
Sbjct: 63  LNLSHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKVME 122

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L H      + D+V +PPG+++    +MYKV+TPFR A ++  +  D  SLP P IR  
Sbjct: 123 LLAHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEIRAH 182

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                      F  P  +   MFP  EQ AL  L++FC E+V +Y + RDIPAI GTSQL
Sbjct: 183 QKTVSPLSAPLFALPISSTK-MFPASEQAALQRLKQFCYERVIHYAKWRDIPAIDGTSQL 241

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG++S RQC+NRL +   D L    S AF W NEL+WREFY+HL+   PS+    
Sbjct: 242 SPYLAIGLVSVRQCFNRLYQTEPDFLENNHSSAFVWFNELVWREFYQHLIVANPSLSKQI 301

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F PWTE I W  D     AW QG TGFPIIDAAMRQLN  GWMHNRLRM+TASFLVKDL
Sbjct: 302 AFQPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRLRMLTASFLVKDL 361

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYFRIFNPT QG++FDP G FI
Sbjct: 362 LIDWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTTQGRKFDPDGEFI 421

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           RHWLPEL +VP + IH P  W  K    L+YP PIVDH KA    +  Y  AKK+
Sbjct: 422 RHWLPELADVPDRDIHTPSEWAIKTGHYLDYPQPIVDHAKARVTAIASYEEAKKR 476


>gi|260597109|ref|YP_003209680.1| deoxyribodipyrimidine photolyase [Cronobacter turicensis z3032]
 gi|260216286|emb|CBA29241.1| Deoxyribodipyrimidine photo-lyase [Cronobacter turicensis z3032]
          Length = 473

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 257/475 (54%), Positives = 333/475 (70%), Gaps = 3/475 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL AAC + DA+VI +FIATP+QWR H ++ RQ+ FI+ +L 
Sbjct: 1   MTTHLVWFRADLRVNDNLALAAACRDPDARVIGLFIATPQQWRDHTLAPRQAAFIHQNLE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++L+ +GI     +  +F  +++ L ++C +Q+V  LFYN QYE+NE RRD  + +R
Sbjct: 61  ALQQALATRGIALFTREAPDFAAAVDALAAFCDEQQVAALFYNYQYELNEARRDAAVARR 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+ RV C+ FDDSV+LPPGS +    +MYKV+TP+ +A I+ L +     +  P  R  G
Sbjct: 121 LEGRVACQGFDDSVMLPPGSAVTGNGEMYKVFTPYSRAFIRRLGEGLPPCVSAPKPRAGG 180

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +T +     FDYP +  D  +FP GE+ AL  LR FC+     Y E+RD PAI+GTS L
Sbjct: 181 ALTDAPALAPFDYPCETPDGMLFPAGEEAALKRLRDFCRHDAGDYPEKRDFPAIRGTSLL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IGVLSPRQC +RL  E    L         WLNELIWREFYRHL+  +P +C  +
Sbjct: 241 SPYLAIGVLSPRQCLHRLLTEHPRALEGGSGAV--WLNELIWREFYRHLIVAWPHLCRHQ 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT ++ W ++    QAW +G TG+PI+DAAMRQ+N  GWMHNRLRMITASFLVKDL
Sbjct: 299 PFIDWTARVAWQRNDAHFQAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVKDL 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR GE YFMSQL+DGD A+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD +G FI
Sbjct: 359 LVDWRRGERYFMSQLIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDAEGEFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R W+PEL+++P + +H PH W  KN  +L YP PIVDHK+A   TL  Y AA+K+
Sbjct: 419 RRWVPELSHIPGKAVHEPHVWAKKNGKALRYPQPIVDHKQARVATLAAYEAARKE 473


>gi|329998823|ref|ZP_08303226.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3]
 gi|328538550|gb|EGF64657.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3]
          Length = 461

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 251/465 (53%), Positives = 317/465 (68%), Gaps = 5/465 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  VIC+ FDDSVLLPPGS+L    +MYKV+TPF+ A I+ L       +  P  R   
Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPACVAAPKPRQAP 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +P   +YP    D + F   E+ AL  LR FC++    Y  QRD PA++GTS+L
Sbjct: 180 ARQAPPLPEL-NYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP L+IGVLSPRQC +RL  E    L        +WLNELIWREFYRHLM +YP +C G+
Sbjct: 239 SPCLAIGVLSPRQCLHRLLTEHPAALDGGAGA--TWLNELIWREFYRHLMVYYPKLCKGR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF  WT+K+ W  +   LQAW++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 297 PFTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG FI
Sbjct: 357 RLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           R WLPEL  VP + +H P +W DK  ++L+Y  PIVDHK+A   T
Sbjct: 417 RRWLPELAKVPEKALHQPWAWADKQGITLDYSRPIVDHKQARQET 461


>gi|237747870|ref|ZP_04578350.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13]
 gi|229379232|gb|EEO29323.1| deoxyribodipyrimidine photolyase [Oxalobacter formigenes OXCC13]
          Length = 498

 Score =  488 bits (1256), Expect = e-135,   Method: Composition-based stats.
 Identities = 235/472 (49%), Positives = 319/472 (67%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           HLVW R DLR+TDNKAL AAC + DA V A+F A   QW +HG+S RQ  F++  L ++ 
Sbjct: 12  HLVWFRQDLRLTDNKALAAACEDKDATVYALFTAPLSQWEEHGVSERQVAFMHRHLEKLS 71

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L + GI    H C NFDD+  ++  +C ++++  +F+N QYE+NE RRD+ LE  L  
Sbjct: 72  EGLERIGIPLVCHVCGNFDDAARFVIDFCRREQIDDVFFNNQYELNEQRRDRWLEDNLPQ 131

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                 +DD +LLPPG+  N   +MY+V+TPF++  ++ L  AD  SLP P  RL     
Sbjct: 132 ETSLNRYDDCLLLPPGAANNRQGEMYRVFTPFKRTFLEKLGSADTGSLPQPERRLHVTRI 191

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             +   FF Y   +    +  GE+ A+ +L  FC+EKV+ Y + RD P + GTS++S YL
Sbjct: 192 KGSSSPFFPYEKVSFGAEYTPGEEAAIALLENFCREKVHDYDKTRDRPDLDGTSRVSAYL 251

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           +IGVLSPRQC N L  E  D + + K G   WLNEL+WREFY HL+A +P +C  +PF+ 
Sbjct: 252 AIGVLSPRQCLNALLAEVPDAIWQSKGGGAVWLNELVWREFYYHLIAAFPRLCRYEPFLE 311

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
           WT++I WN +    +AW +G TG+PI+DAAMR+L   GWMHNRLRMI ASFLVKDLLVDW
Sbjct: 312 WTDRIVWNANEADFRAWVEGRTGYPIVDAAMRELKETGWMHNRLRMIVASFLVKDLLVDW 371

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE YFMSQL+DG+L +NNGGWQW+ASTG D++P+FRIFNP  QG++FDP G ++R WL
Sbjct: 372 RKGERYFMSQLIDGNLPANNGGWQWSASTGVDAMPWFRIFNPVTQGQKFDPAGHYVRRWL 431

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           PEL +VP   IH P  W  KN + L+YP P+VDH++A   TLN + A ++++
Sbjct: 432 PELKDVPEGDIHTPQLWAKKNHVVLDYPDPVVDHRQAREKTLNAFNAVRQKA 483


>gi|297521407|ref|ZP_06939793.1| deoxyribodipyrimidine photolyase [Escherichia coli OP50]
          Length = 452

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 236/454 (51%), Positives = 314/454 (69%), Gaps = 5/454 (1%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88
           AC NS A+V+A++IATP QW  H +S RQ+  I A L  +Q +L++KGI   + +  +F 
Sbjct: 2   ACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFV 61

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            S+E +   C +  VT LFYN QYE+NE  RD  +E+ L+  V+C+ FDDSV+LPPG+++
Sbjct: 62  ASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALR-NVVCEGFDDSVILPPGAVM 120

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-M 207
               +MYKV+TPF+ A ++ L +     +  P +R +G + P+      +YP Q+ D   
Sbjct: 121 TGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPAPSITL-NYPRQSFDTAH 179

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS  L+ G LSPRQC +RL  E 
Sbjct: 180 FPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQ 239

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
              L         WL+ELIWREFYRHLM +YPS+C   PFI WT++++W  +   LQAW+
Sbjct: 240 PQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQ 297

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           +G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+
Sbjct: 298 EGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAA 357

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P  W 
Sbjct: 358 NNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA 417

Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            K  + L+YP PIVDHK+A   TL  Y  A+K +
Sbjct: 418 QKAGVMLDYPQPIVDHKEARLRTLAAYEEARKGA 451


>gi|330830812|ref|YP_004393764.1| deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
 gi|328805948|gb|AEB51147.1| Deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
          Length = 473

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 214/475 (45%), Positives = 289/475 (60%), Gaps = 6/475 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW RNDLR+ DN AL  AC   D  V A+FI +P QWRQH ++  +  F+ A + ++
Sbjct: 1   MKLVWFRNDLRLADNPALRHACA-GDEPVAALFIISPTQWRQHKMAPIRQRFMLAQVDEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L+  GI     +   F +    L + C +Q VT+L+ N+  EI+E+RRD  +   L 
Sbjct: 60  GRELAALGIQLHLLRVETFAEVPAVLANLCREQGVTQLYANQAIEIDELRRDHAVSAALA 119

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---L 184
            + V C  F+   +LPPG +L  + +M+KV+TPF +A +++L +        P  R   L
Sbjct: 120 EQAVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKSLDEEGFVIHRAPTPRGEPL 179

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                              +DP +P+GE  AL  L  F ++ V  Y E RD PAI GTS 
Sbjct: 180 PWQPLAERAWVDEALGELTVDPRWPVGEAEALRRLNIFLEQAVLDYGETRDFPAIAGTSV 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G++SPRQC   L++             F WLNELIWREFYRHL+   P++ M 
Sbjct: 240 LSPYLAAGIISPRQCVAVLQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPALSMN 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF P T  + W+ D     AW +G TG+PI+DAAMR LNT GWMHNRLRMI ASFL KD
Sbjct: 300 RPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNTTGWMHNRLRMIVASFLTKD 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + WR+GE+YFMS+L+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQG F
Sbjct: 360 LHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEF 419

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR W+ EL ++P  Y+H PH WL       +YP+P+VDH  A    +  + + +K
Sbjct: 420 IRTWVTELADIPPAYVHQPHDWLRLKGR-QDYPVPMVDHAVARVRAIEMFRSLEK 473


>gi|89073732|ref|ZP_01160246.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
 gi|89050507|gb|EAR55999.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
          Length = 489

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 217/475 (45%), Positives = 308/475 (64%), Gaps = 11/475 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R+DLR+ DN AL  A   S   +IA+FIATP QW QH ++A Q  FI+  L  +++
Sbjct: 12  IIWFRSDLRVVDNTALNHAIE-SGLPIIALFIATPMQWHQHNMAAVQVDFIHRRLQVLKQ 70

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+++ I  Q  + ++F +S+  ++  C+      +F N+QY INE +RD  + + L  +
Sbjct: 71  QLAKRNIPLQVIEVNDFSESVYLIEQVCIDYNAVHVFANKQYPINEHKRDNSVGELLAKK 130

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT---- 185
            +    FDD+ +L P  +L    +++KV+TPFR A I+    +    + + +  +T    
Sbjct: 131 SIKFSIFDDNYILQPEMVLTRDGELFKVFTPFRNAWIKRFSSSTCYPVTINSDIVTSGVV 190

Query: 186 -GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              ++ S+  + F+YP      ++P+ E+     L  FC+ K   Y + RD PAI GTS 
Sbjct: 191 SKLLSDSSQIKAFNYPI-IDSVLWPVDEETIAQRLETFCETKAETYHQNRDFPAIDGTSC 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCM 303
           LSPYL+IG LS RQC ++L++ F +     K  GAF+WLNE++WREFY HL+  YP +  
Sbjct: 250 LSPYLAIGALSARQCLHQLQQYFPNAFEINKDDGAFTWLNEIVWREFYGHLLHRYPELSK 309

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF  +T+ ++W  D  LL+AW++G TGFPI+DA MRQL   GWMHNRLRMITASFL K
Sbjct: 310 HQPFQKFTQFVKWKDDEALLKAWQEGKTGFPIVDAGMRQLRATGWMHNRLRMITASFLTK 369

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL DWR+GE++FM  L+DGD +SNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP+G 
Sbjct: 370 DLLCDWRVGEQWFMQHLIDGDFSSNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPKGD 429

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+ EL +VP +YIH PH W  +   SLNYPLPIVDHK+A    +  +  AK
Sbjct: 430 FIRTWVKELEHVPDKYIHTPHQWASEE--SLNYPLPIVDHKEARLIAIESFKQAK 482


>gi|117618175|ref|YP_855643.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559582|gb|ABK36530.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 473

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 214/475 (45%), Positives = 285/475 (60%), Gaps = 6/475 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+W RNDLR+ DN AL  AC   D  V A+FI +P QWRQH ++  +  F+ A +  +
Sbjct: 1   MKLIWFRNDLRLADNPALRHACA-GDEPVAALFILSPSQWRQHKLAPIRQRFLLAQVDVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L+  GI     +   F +    L   C +  VT+L+ N+  EI+E+RRD+ +   L 
Sbjct: 60  GRELAALGIPLHLLRVETFSEVPAALAELCRELGVTQLYANQAIEIDELRRDQAVSAALA 119

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186
            + V C   +   +LPPG +L  + +M+KV+TPF +A ++ L +        PA R    
Sbjct: 120 EQTVGCHWLNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALDEDGFVIHRPPAPRGEPL 179

Query: 187 PVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           P  P     F D        DP +P+GE  A   L  F ++ V  Y E RD PAI GTS 
Sbjct: 180 PWQPLAERHFVDAALGELTADPRWPVGEAEASRRLNDFLEQAVLDYGETRDFPAIAGTSV 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G++SPRQC   L++             F WLNELIWREFYRHL+   P++ M 
Sbjct: 240 LSPYLAAGIISPRQCVAALQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVQIPTLSMN 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF P T  + W+ D     AW +G TG+PI+DAAMR LN  GWMHNRLRMI ASFL KD
Sbjct: 300 RPFKPETAALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTKD 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + WR+GE+YFMS+L+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQG F
Sbjct: 360 LHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGEF 419

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR W+ EL ++P  Y+H PH WL       +YP P+VDH  A    +  + A +K
Sbjct: 420 IRTWVSELADLPAAYLHQPHDWLRLKGRH-DYPAPMVDHAVARVRAIEMFRALEK 473


>gi|294637450|ref|ZP_06715740.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685]
 gi|291089391|gb|EFE21952.1| deoxyribodipyrimidine photolyase [Edwardsiella tarda ATCC 23685]
          Length = 477

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 243/473 (51%), Positives = 320/473 (67%), Gaps = 4/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ H+VWLRNDLR+TDN+AL+AAC + DA+V+A+++ATP QW+   ++ RQ+ FI+ +L 
Sbjct: 1   MTTHVVWLRNDLRVTDNRALHAACADPDARVLALYVATPRQWQAQDMAPRQAQFIWQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L+ + I       +++    + +  +C Q + T LF+NRQYE+NE RRD+ L   
Sbjct: 61  CLRLELAARHIALHGLSVADYAAQRQAVAHFCAQHQATALFFNRQYELNERRRDEALCAT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   + C  FDD++LLPPG++L  A QM+KV+TPF+ A +Q L Q D   LP P  R   
Sbjct: 121 LS--IPCHGFDDALLLPPGAVLTAAGQMFKVFTPFKHAFLQALGQQDNAPLPAPTRRAYP 178

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              P  +P  FDYP   +D  +FP GE  A   L  FC+  +  Y  +RD PA  GTS L
Sbjct: 179 CAPPPVLPT-FDYPAATVDATLFPAGEAAAQARLAHFCRTDLATYAVRRDFPAQAGTSLL 237

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++GV+SPRQC   L+   +D       G  +WLNELIWREFYRHL+  +P +C  +
Sbjct: 238 SPYLTLGVVSPRQCLAVLQSGMLDSPNAASGGGAAWLNELIWREFYRHLLVAWPDLCRHR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF+PWT +I W  D   L+ W+QG TGFP+IDAAMRQLN  GWMHNRLRM+TASFLVKDL
Sbjct: 298 PFLPWTARIRWRDDEQGLRRWQQGMTGFPLIDAAMRQLNHCGWMHNRLRMLTASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+R+D QG FI
Sbjct: 358 LIDWRLGERYFLSQLIDGDLAANNGGWQWAASTGCDAAPYFRIFNPTTQGQRYDAQGQFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R WLP L +VP   IH P  W  +    L+YP P+VDH +A   TL  +  A+
Sbjct: 418 RRWLPALKDVPDSEIHHPQRWALRQRRVLDYPDPMVDHARARQDTLLAFQRAR 470


>gi|330961741|gb|EGH62001.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 481

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/472 (41%), Positives = 271/472 (57%), Gaps = 6/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +L +  +     Q   +D + E L + C Q +V  L+ N +Y INE RRD  ++K L+
Sbjct: 59  EAALGKLNVPLLIRQADTWDKAPEVLSTLCQQFKVEGLYLNEEYGINETRRDLAVQKMLE 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLT 185
              +   S+ D +L  PGSIL      ++V+T F+K     L +    +R          
Sbjct: 119 EAGVQVNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEATHPVRMPAAQQALSI 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +  + F  P Q +  ++P GE  A   +  F  E++ YY ++RD PA  GTSQL
Sbjct: 179 TSDPVPDQVKGFATPSQTLRALWPAGEGEAKRRMDAFADEQISYYKDERDFPAKPGTSQL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   +
Sbjct: 239 SAYLAAGVISPRQCLHAALSSNHGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRHR 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+L
Sbjct: 299 AFRPETEALKWRDAPDELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNL 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G FI
Sbjct: 359 LIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + WLPEL N+  + IH P S      ++ +YP PIVD  K+    L  + A 
Sbjct: 419 KRWLPELANLNKKQIHDPSSMGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 469


>gi|289624749|ref|ZP_06457703.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289648378|ref|ZP_06479721.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330868910|gb|EGH03619.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 482

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L 
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  V   S+ D +L  PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +    F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|90577743|ref|ZP_01233554.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14]
 gi|90440829|gb|EAS66009.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14]
          Length = 489

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 225/486 (46%), Positives = 308/486 (63%), Gaps = 12/486 (2%)

Query: 1   MKATTAMSVHLV-WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           M   T    H+V W R+DLR+ DN AL  A  +S   +IA+FIATP QW QH ++A Q  
Sbjct: 1   MTNKTVTEQHVVIWFRSDLRVVDNTALNHAI-DSGLPIIALFIATPMQWHQHNMAAVQVD 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI+  L  +++ L+++ I  Q  + ++F +S+  +D  C       +F N+QY INE +R
Sbjct: 60  FIHRRLQVLKQQLAKRNIPLQVIEVNDFAESVHVIDQICFDYNAVHVFANKQYPINEQQR 119

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D    + +  + I    FDD+ +L P ++L    +++KV+TPFR A I+    +    + 
Sbjct: 120 DNSAGELIAKKGIKFSIFDDNYILQPETVLTRDGELFKVFTPFRNAWIKRFTLSPCYPVT 179

Query: 179 VPAIRLTGP-----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                +T       ++ SN  + F+YP      ++P+ E+     L  F + K   Y + 
Sbjct: 180 KDGYIVTSDAVIKLLSVSNPIKAFNYPI-IDSVLWPVDEETIAQRLETFFETKAETYHQN 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292
           RD PAI GTS LSPYL+IG LS RQC  +L + F + L   K  GAF+WLNE++WREFY 
Sbjct: 239 RDFPAIDGTSCLSPYLAIGALSARQCLYQLLQHFPNALEINKDDGAFTWLNEIVWREFYG 298

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HL+  YP +   +PF  +T  ++W  D+ LL+AW++G TGFPI+DAAMRQL + GWMHNR
Sbjct: 299 HLLHRYPELSQYQPFQKFTRFVQWKDDAVLLKAWQEGKTGFPIVDAAMRQLRSTGWMHNR 358

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMITASFL KDLL DWR+GE++FM  L+DGD ASNNGGWQWAASTG D+ PYFR+FNPT
Sbjct: 359 LRMITASFLTKDLLCDWRVGEQWFMQHLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPT 418

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           +QG+RFDP+G FIR W+ EL +VP +YIH PH W      SLNYPLPIVDHK+A    + 
Sbjct: 419 LQGQRFDPKGDFIRTWVKELEHVPDKYIHTPHQWASAE--SLNYPLPIVDHKEARLIAIE 476

Query: 473 QYYAAK 478
            +  AK
Sbjct: 477 SFKQAK 482


>gi|311693606|gb|ADP96479.1| deoxyribodipyrimidine photolyase [marine bacterium HP15]
          Length = 467

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 202/471 (42%), Positives = 279/471 (59%), Gaps = 7/471 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW RNDLR+ DN AL AAC +S+ +V A FI TP+QW++H  S  +  F+ A    +
Sbjct: 2   TQLVWFRNDLRVADNPALTAACESSE-EVRACFILTPDQWQEHDWSPARVQFVVAHANAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++ GI   + Q   FDDS+  L+S+C +  VT L +N +Y +NE +RDK L+ R  
Sbjct: 61  AEELAKLGIPLSFIQAKRFDDSLGKLESHCEEHGVTALHFNEEYGVNERKRDKALKHRFD 120

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I  + + D  + P G IL      Y V+TPF +     + +      P P  R    
Sbjct: 121 QLGIAVRKYRDQTVAPVGEILTQQNDPYSVFTPFSRRWRSWIEETHPGLFPTPKARGNA- 179

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V+P  I    +    A +P+   GE  A   L +F +++   Y E+RD PAI GTSQ+SP
Sbjct: 180 VSPEQIDAIPEAFRDAPEPLVATGEDAAHDQLERFLEKRGGAYKEKRDFPAIDGTSQISP 239

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+ GVLS RQC    ++         + G  +W+ E+ WR+FY +++  +P V M + F
Sbjct: 240 YLANGVLSGRQCLIAGRQ--AQGAGGNQEGLGTWITEIAWRDFYINILYHFPRVSMHRAF 297

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P TE +EWN      +AWK G TG PI+DAAMRQLN  GWMHNRLRMITA +L K+L +
Sbjct: 298 KPETETLEWNNPGDRFEAWKTGNTGVPIVDAAMRQLNQTGWMHNRLRMITAMYLTKNLFI 357

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE YFMS+L+DG LASNNGGWQW+ASTG D+ PYFR+FNP  Q +RFDP G FIR 
Sbjct: 358 DWRLGEAYFMSKLIDGFLASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPDGDFIRE 417

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           W+PEL  + ++ IH P +      +   YP  IVD K++    + ++   K
Sbjct: 418 WVPELAKLDSKRIHDPGA--KGGVIPKGYPRQIVDLKESRKEAIAKFQELK 466


>gi|237799740|ref|ZP_04588201.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022595|gb|EGI02652.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 482

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 190/473 (40%), Positives = 272/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QW  H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAALQRG--PTLAVYLLSPAQWHSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L + C + +V  +  N++Y +NE RRD+ +++ L+
Sbjct: 59  EKALGKLNVPLLIREADTWDKAPEVLSTLCKELKVEGVHLNQEYGVNETRRDQAVQQTLE 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I    + D +L  PGSIL      ++V+T F+K     L +A  R +  P  +    
Sbjct: 119 KDGIHVTHYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRLVRTPPAQQPLS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           V         + F  P +A+  ++P GE  A   +  F  E++ YY   RD PA  GTSQ
Sbjct: 179 VKSDAIPEQVKGFATPSKALRDLWPAGEAEASRRMAAFADEQISYYKTDRDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  +P V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGFPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPDELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + +H P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQLHDPSSIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|330887853|gb|EGH20514.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 482

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 196/473 (41%), Positives = 275/473 (58%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L 
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  V   S+ D +L  PGSIL  A   ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKAGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +    F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|257482020|ref|ZP_05636061.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330988593|gb|EGH86696.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 482

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L 
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  V   S+ D +L  PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +    F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALTAFKAL 470


>gi|213967212|ref|ZP_03395361.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           T1]
 gi|301381052|ref|ZP_07229470.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062191|ref|ZP_07253732.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           K40]
 gi|213928054|gb|EEB61600.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           T1]
          Length = 482

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 277/473 (58%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMQRG--PTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L + C Q +V  L+ N +Y INE RRD+ +++ +Q
Sbjct: 59  EKALGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQSMQ 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S  D +L  PGSIL      ++V+T F+K     L QA  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +  + F  P + +  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S      ++ +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|331008878|gb|EGH88934.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 482

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L 
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  V   S+ D +L  PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +    F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSPPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALTAFKAL 470


>gi|71733434|ref|YP_273281.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71553987|gb|AAZ33198.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 482

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 273/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +K+L    +     +   +D + E L + C Q ++  L  N++Y INE RRD+ ++K L 
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGINETRRDQAVQKALE 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  V   S+ D +L  PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +    F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DW  GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWHEGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|330873295|gb|EGH07444.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 482

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 277/473 (58%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAALQRG--PTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L S C Q +V  L  N +Y INE RRD+ +++ +Q
Sbjct: 59  EKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQAMQ 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S  D +L  PGSIL      ++V+T F+K     L +A  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTVHTPEAQQPLS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +  + F  P +++  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADEQISYYKDERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ W+PEL ++  + IH P S      ++ +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWMPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|320325702|gb|EFW81763.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327379|gb|EFW83393.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881872|gb|EGH16021.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 482

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 274/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +K+L    +     +   +D + E L + C Q ++  L  N++Y INE RRD+ ++K L 
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQLKIEGLHLNQEYGINETRRDQAVQKALE 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  V   S+ D +L  PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +    F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRMATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S       + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASIGGLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|330964968|gb|EGH65228.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 482

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 276/473 (58%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAALQRG--PTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L S C Q +V  L  N +Y INE RRD+ +++ +Q
Sbjct: 59  EKALGKLNVPLLIREADTWDQAPEVLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQAMQ 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S  D +L  PGSIL      ++V+T F+K     L +A  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTVHTPEAQQPLS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +  + F  P +++  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKSLRDLWPAGEVEASRRIEAFADEQISYYKDERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL  GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLVAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ W+PEL ++  + IH P S      ++ +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWMPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|298485692|ref|ZP_07003771.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159718|gb|EFI00760.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 482

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 196/473 (41%), Positives = 275/473 (58%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +K+L    +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K L 
Sbjct: 59  EKALGALNVPLLIREADTWDQAPEVLSTLCTQFKVEGLHLNQEYGINETRRDQAVQKALE 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  V   S+ D +L  PGSIL      ++V+T F+K     + QA  + +  P  + +  
Sbjct: 119 KAGVQVTSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPVRTPKAQQSLS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +    F  P +A+  ++P GE  A   +  F   ++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDSIPDQVEGFATPSKALRDLWPAGEAEARRRVATFADAQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALGSNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGLF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S     D + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNRKQIHDPASIGGLFDAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|28868336|ref|NP_790955.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28851573|gb|AAO54650.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331018110|gb|EGH98166.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 482

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 276/473 (58%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMQRG--PTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L + C Q +V  L  N +Y INE RRD+ +++ +Q
Sbjct: 59  EKALGKLNVPLLIREADTWDQAPEVLATLCKQFKVEGLHLNEEYGINETRRDQAVQQSMQ 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S  D +L  PGSIL      ++V+T F+K     L QA  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +  + F  P + +  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S      ++ +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|329894045|ref|ZP_08270030.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
 gi|328923217|gb|EGG30537.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
          Length = 467

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 194/471 (41%), Positives = 279/471 (59%), Gaps = 4/471 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW R DLR+ DN AL+ AC + +A VIA+F ATP+QWR H ++  +  F++ +L 
Sbjct: 1   MTRHLVWFRQDLRVYDNTALWHACLDPEADVIALFCATPQQWRLHDMAPVRERFLWRNLT 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++ L +  I      C  F+D ++ + + C    VT L+ N +Y +NE +RD+ + + 
Sbjct: 61  ALKERLGELNIPLVVKHCQTFEDCVQDVPTLCEALGVTNLYANCEYPVNEQKRDRAIREA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  +V C    D  + P G +L      Y V++PF++A I+          P P  R   
Sbjct: 121 LADKVSCHWHHDFGIKPLG-LLTKTGNPYTVFSPFKRAWIERWRADPAPIYPAPEPRRCS 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              P +     D   QA+D  +P GE  A++ L  FC++++ +Y  +RD+PA  GTS+LS
Sbjct: 180 AAVPGSELLASDK--QAMDQFWPAGEDAAMNRLAHFCEDRIDHYKAKRDLPAEPGTSELS 237

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ GV+SPR C +         + + + G  +W++ELIWR+FY H++  YP V M + 
Sbjct: 238 PYLAAGVISPRVCLDAAIRANRGDIHEGRQGPDTWISELIWRDFYIHILDTYPRVSMNRC 297

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    EKI W        AW +G TG+PI+DAAMRQL   GWMHNRLRM+ A FL K LL
Sbjct: 298 FRVEGEKIPWRNAPEDFAAWCEGRTGYPIVDAAMRQLVQTGWMHNRLRMLVAMFLTKQLL 357

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE +FM  L+DGDL +NNGGWQWAASTG D+ PYFRIFNP  Q ++FD  G FIR
Sbjct: 358 IDWREGERFFMQHLIDGDLGANNGGWQWAASTGTDAAPYFRIFNPITQSQKFDASGAFIR 417

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            ++PEL  +  + IH P + L +  L+  YP P+V+ K A    L  + + 
Sbjct: 418 RFVPELRELSDKDIHMP-APLMRQSLASAYPEPVVELKFARERALAAFKSV 467


>gi|302130079|ref|ZP_07256069.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 482

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 277/473 (58%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRVHDNTALTAAMQRG--PTLAVYLLSPTQWRNHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K++ +  +     +   +D + E L + C Q +V  L+ N +Y INE RRD+ +++ +Q
Sbjct: 59  EKAIGKLNVPLLIREADTWDQAPEVLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQSMQ 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S  D +L  PGSIL      ++V+T F+K     L QA  R++  P  +    
Sbjct: 119 ADGVHFTSHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTVHTPEAQQPLS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +  + F  P + +  ++P GE  A   +  F  E++ YY ++RD PA  GTSQ
Sbjct: 179 IKSDAIPDQVKGFSTPSKTLRDLWPAGEVEASRRIEAFAGEQISYYKDERDFPARPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELLAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P S      ++ +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADLNKKQIHDPASVGGLFGVA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|330448252|ref|ZP_08311900.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492443|dbj|GAA06397.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 489

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 227/474 (47%), Positives = 299/474 (63%), Gaps = 9/474 (1%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R+DLR  DN AL  A       VIA+F+ATP QW +H ++A Q  FI+  L  +++
Sbjct: 12  IIWFRDDLRTVDNTALNHAIETG-LPVIALFVATPMQWHEHHVAAIQIDFIHRRLRVLKQ 70

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I  Q  QC++F +S++ +  YC Q RV  +F N+QY +NE  RD+ L   L   
Sbjct: 71  QLAALNIPLQVMQCNDFSESVDAIAEYCHQHRVVHVFANKQYPLNEQLRDEKLGVLLAQS 130

Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL---VQADLRSLPVPAIRLTG 186
            I +S FDD+ +L P +ILN   +++KV+TP+R A I+         + +    A+  T 
Sbjct: 131 GIKQSLFDDNYVLEPETILNREGELFKVFTPYRNAWIKRFSAEQSYPVTTNKEVALSDTT 190

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               ++        +  I+  ++P+ E+  L  L  FC  K   Y +QRD PAI GTS L
Sbjct: 191 SAMLADSTDIQSLGYPVIESVLWPVDEEAILQRLDTFCVTKAQDYHQQRDFPAIDGTSCL 250

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCMG 304
           SP+L+IG LS RQC  +L + F   L   K  GAF+WLNE+IWREFY HL+  YP +   
Sbjct: 251 SPFLAIGALSARQCVYQLLQHFPHALEVNKEDGAFTWLNEIIWREFYGHLLHRYPELSKN 310

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PF  +T+ + W  +  LL+AW+ G TGFPI+DAAMRQL   GWMHNRLRMITASFL KD
Sbjct: 311 HPFQDYTQYVRWQDNPILLKAWQDGKTGFPIVDAAMRQLRATGWMHNRLRMITASFLTKD 370

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL DWR GE++FM  L+DGD ASNNGGWQWAASTG DS PYFRIFNPT+QG+RFDP+G F
Sbjct: 371 LLCDWRAGEQWFMQHLIDGDFASNNGGWQWAASTGTDSQPYFRIFNPTLQGQRFDPKGDF 430

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+ EL  VP +YIH PH W      SL+YPLPIVDHK+A    +  +  AK
Sbjct: 431 IRTWVKELAKVPDKYIHTPHQWDSSG--SLDYPLPIVDHKEARLLAIEAFKQAK 482


>gi|77460957|ref|YP_350464.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
           Pf0-1]
 gi|77384960|gb|ABA76473.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
           Pf0-1]
          Length = 488

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 191/482 (39%), Positives = 269/482 (55%), Gaps = 7/482 (1%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
            T   + L+WLR+DLR  DN AL AA     +  +AV++ +P+QW++H  +  +  F   
Sbjct: 3   QTETDMQLIWLRSDLRQHDNTALAAAAERGPS--VAVYLLSPQQWQEHDDAPCKIDFWLR 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L ++ KSL    I        ++D +   L   C Q ++  +  N +Y INE RRD  +
Sbjct: 61  NLHKLSKSLGDLNIPLLIRTAPHWDQAPAVLLELCRQLKIEAVHVNEEYGINESRRDAAV 120

Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            K LQ   +   S+ D +L  PGS+L      ++V++ FRK   ++L ++       P  
Sbjct: 121 AKALQAEGITFHSYLDQLLFKPGSVLTRTGTYFQVFSQFRKVCYEHLHRSMPSLKQAPGK 180

Query: 183 RLT---GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           +                F  P  ++  ++P GE  A   L  F   ++ YY  +RD PA 
Sbjct: 181 QSALNIASDPVPEAIEGFPTPGASLRALWPAGETEARRRLDTFADAQIDYYKSERDFPAK 240

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTSQLS YL+ GV+SPRQC +   +         K GA +W+NEL+WREFY+H++  YP
Sbjct: 241 PGTSQLSAYLAAGVISPRQCLHAALQSNQGEFESGKVGAVTWINELLWREFYKHILVGYP 300

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V   + F P TE + W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A 
Sbjct: 301 RVSRHRAFRPETEDLAWRNAPEDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAM 360

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DS PYFRIFNP  Q ++FD
Sbjct: 361 FLTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDSAPYFRIFNPVSQSEKFD 420

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            +G FI+HWLPEL  +  + IH P S      ++ +YP PIV+   +    L  +     
Sbjct: 421 SEGLFIKHWLPELAGLNKKEIHNPASVGGLFGVA-DYPAPIVNLSASRERALAAFKNLPS 479

Query: 480 QS 481
           +S
Sbjct: 480 RS 481


>gi|120555269|ref|YP_959620.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8]
 gi|120325118|gb|ABM19433.1| deoxyribodipyrimidine photo-lyase type I [Marinobacter aquaeolei
           VT8]
          Length = 463

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 197/471 (41%), Positives = 265/471 (56%), Gaps = 11/471 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW RNDLR+ DN AL AAC + +  V A F+ TP+QW +H  SA +  F+      +
Sbjct: 2   TQLVWFRNDLRLADNPALTAACQSGE-PVRACFVVTPQQWLEHDWSAARVRFVLEHANAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++ G+   +     F D  + L  +C    +  + +N +Y INE RRDK L  RL 
Sbjct: 61  ARELAELGVPLTFLNAERFSDGSDALLQFCKDSDIADVHFNEEYGINERRRDKALRDRLV 120

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +    + D  + P G IL    + Y V+TPF +     + +      P PA  +   
Sbjct: 121 DFGIRVSKYRDQTVAPVGQILTQQNEPYSVFTPFSRRWRSWIEETRPTLHPRPAA-IGNA 179

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V P            A +P+ P GE  A   L  F  E+   Y + RD PA+ GTSQLSP
Sbjct: 180 VKPEQTDTLPAPFRDAPEPLVPTGEDAAHEQLEAFLTERAKDYKDNRDFPALDGTSQLSP 239

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+ GVLS RQC    K+  +        G  +W+NE+ WR+FY H++  YP V MG+ F
Sbjct: 240 YLANGVLSGRQCLIAAKQSGL-----SGEGVETWINEIAWRDFYIHILYHYPRVSMGRAF 294

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
              TE + WN      +AWK+G TG PI+DAAMRQL   GWMHNRLRMITA FL K+L +
Sbjct: 295 KEETEALAWNTPGEHFEAWKEGRTGIPIVDAAMRQLKATGWMHNRLRMITAMFLTKNLFI 354

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE +FM  L+DG LASNNGGWQW+ASTG D+ PYFR+FNP  Q +RFDP+G FIR+
Sbjct: 355 DWRLGEAWFMQNLVDGFLASNNGGWQWSASTGTDAAPYFRVFNPVTQSERFDPKGEFIRN 414

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           W+PEL  +  + IH P        +   YP PIVD K++    + ++ A K
Sbjct: 415 WVPELAKLDNKRIHDPSR---GGVIPKGYPRPIVDLKESRKEAIARFQALK 462


>gi|262274043|ref|ZP_06051855.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886]
 gi|262221853|gb|EEY73166.1| deoxyribodipyrimidine photolyase [Grimontia hollisae CIP 101886]
          Length = 483

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 220/474 (46%), Positives = 284/474 (59%), Gaps = 5/474 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR+ DN AL  AC + +  VIA++  TP QW+ H ++  Q+  I   L+ +
Sbjct: 1   MKLVWFRRDLRVKDNVALTEACKSGE-PVIAIYYETPVQWKAHALAPMQADLIQRRLVTL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L    I   +     + D  + L   C Q ++  +F  R YE +EV RD  +   L 
Sbjct: 60  RQELETLNIPLLFRSVDRYKDINQSLAQLCQQYQIADIFCTRDYETDEVDRDNAIAGMLS 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                   FD   +  PG + N A   Y+V+TPF+KA I    Q DL  +  P+   T  
Sbjct: 120 LTGTTLHRFDYKCIFAPGMVTNGAGNTYRVFTPFKKAWITQATQLDLSPIGAPSPVKTDA 179

Query: 188 VTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +T + + +     F   Q     +PI +   +  LR FC+ +V +Y   RD PAI GTSQ
Sbjct: 180 LTSALLRQPCQIAFRYPQCDSVGWPIDDSAIIQRLRDFCRYRVDHYQATRDFPAIPGTSQ 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG +SPRQC  RL  E  + + K   GA  WL+ELIWREFY+H+ A Y  V  G
Sbjct: 240 LSPYLAIGAISPRQCLARLLAEVPNCMEKDAGGAHVWLSELIWREFYQHIAAAYIDVSKG 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           K F  WT+ IEWN+D    Q WKQG TGFPI+DAAMRQLN  GWMHNRLRMI ASFLVKD
Sbjct: 300 KAFQDWTDNIEWNRDELQFQRWKQGKTGFPIVDAAMRQLNDTGWMHNRLRMIVASFLVKD 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D+ PYFR+FNP  Q K+FDP   F
Sbjct: 360 LHIDWRWGERYFMSKLIDGDFAANNGGWQWSASTGTDAQPYFRVFNPASQSKKFDPNVRF 419

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR WL EL +VP   +H PH W +K  + L+YP PIVDHK A    +  +  AK
Sbjct: 420 IRRWLKELESVPDSALHTPHIWAEKKGIELSYPAPIVDHKTARISAIEMFEMAK 473


>gi|302185909|ref|ZP_07262582.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
           642]
          Length = 482

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 275/473 (58%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++L +  +     +   +D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EQALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S+ D +L  PGSIL      ++V+T F+K     + +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRMHEAMPHPIRTPKAQPAQS 178

Query: 188 V---TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +   T  +  + F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDTVPDQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHNPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|145300128|ref|YP_001142969.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852900|gb|ABO91221.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 473

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/475 (43%), Positives = 281/475 (59%), Gaps = 6/475 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW RNDLR+ DN AL  AC  +  +V A+F+ +P QW+QH ++  +  F+ A + ++
Sbjct: 1   MKLVWFRNDLRLADNPALRHACAEA-GEVAALFVISPTQWQQHKMAPIRQQFLLAQVDEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            K+L+  GI     +   F +    L S   +  V++L+ N+  EI+E RRD  +   L 
Sbjct: 60  GKALAALGIPLHLLRVETFAEMPTALASLSRELGVSQLYANQAIEIDEQRRDLAVSAMLA 119

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + V C  F+   +LPPG +L  + +M+KV+TPF +A ++ L +        PA R    
Sbjct: 120 EQEVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKALEEDGFVIHRAPAPRAEPL 179

Query: 188 VTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                  R + Y        DP +P+GE  A   L  F +  V  Y E RD PA  GTS 
Sbjct: 180 PWQPLTEREWSYGALGEVTPDPRWPVGEAEAQRRLHAFLEPAVLDYEETRDFPAQAGTSI 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G++SPRQC   L++             F WLNEL+WREFYRHL+   P++ M 
Sbjct: 240 LSPYLAAGIISPRQCVGVLQQRLGHRPQSKAQPGFVWLNELVWREFYRHLLVLVPTLSMN 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PF P T  + W+ D     AW +G TG+PI+DAAMR L+  GWMHNRLRMI ASFL KD
Sbjct: 300 LPFKPETATLPWSWDPVAFAAWCEGRTGYPIVDAAMRCLHATGWMHNRLRMIVASFLTKD 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + WR+GE+YFMSQL+DGDLA+NNGGWQWAA TG D+ PYFR+FNPT QG+RFDPQG F
Sbjct: 360 LHIHWRLGEDYFMSQLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFDPQGDF 419

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR W+ EL ++P  Y+H PH WL        YP P+VDH  A    +  +   +K
Sbjct: 420 IRTWVTELADIPAAYVHQPHDWLRLKG-GRGYPAPMVDHALARVKAIEMFRNLEK 473


>gi|289678393|ref|ZP_06499283.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
           FF5]
          Length = 482

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +  ++D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S+ D +L  PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPYPVRTPKAQPAQS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +  + F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDVVPDQVKGFAMPSKALRDLWPAGEAEARRRMDTFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|330941669|gb|EGH44445.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 482

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +  ++D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S+ D +L  PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +  + F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDAVPDQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|66044214|ref|YP_234055.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254921|gb|AAY36017.1| Deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 482

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 195/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +K+L +  +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K + 
Sbjct: 59  EKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGINETRRDQAVQKAMG 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  V   S+ D +L  PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPQAQAAQS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +         + F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDAVPKQVKGFATPSKALRDLWPAGEAEARRRMDAFAAEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|330975589|gb|EGH75655.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 482

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 193/473 (40%), Positives = 273/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +  ++D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGALNVPLLIREADSWDQAPEVLAKLCAQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S+ D +L  PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +  + F  P + +  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDAVPDQVKGFATPSKTLRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|330969367|gb|EGH69433.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 482

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 274/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L + C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGELNVPLLIREADTWDQAPEVLATLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S+ D +L  PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPQAQAAQS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +         + F  P +A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 MKSDAVPEQVKGFATPSKALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|90411278|ref|ZP_01219290.1| Deoxyribodipyrimidine photolyase [Photobacterium profundum 3TCK]
 gi|90327807|gb|EAS44138.1| Deoxyribodipyrimidine photolyase [Photobacterium profundum 3TCK]
          Length = 488

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 228/475 (48%), Positives = 294/475 (61%), Gaps = 10/475 (2%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R+DLRITDN AL  ACH S   VIA++IATP+QW +H ++  Q   I   LL +Q
Sbjct: 7   QLIWFRSDLRITDNTALIHACH-SGRPVIALYIATPKQWYEHTVAPIQIDLIQRRLLVLQ 65

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           + L    I     +  ++    E + +   Q  ++ +F N+Q E NE +RD  + + L +
Sbjct: 66  QQLHTLNIPLLICEVDDYTSIPELMKNLVNQHHISHVFCNKQDEWNEKQRDHSVNQALVE 125

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            +V    FDDS  + PG +       +KV+TPFR+  +         + P P   +  P+
Sbjct: 126 KQVKVSIFDDSCAIAPGRVKTKQGGTFKVFTPFRREWLNVYHSLLPEAQPAPQAVVLHPI 185

Query: 189 TPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           T   + +      F YP +     +P+ E +    L+ FC EKV+ Y E RDIPAI GTS
Sbjct: 186 TSELLAQSATSVSFSYP-EKDSAFWPVEEDDIRRQLQAFCLEKVHLYNEHRDIPAIDGTS 244

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IG LS RQC + L+ EF   L   + GAF WLNELIWREFYRHL   Y  +  
Sbjct: 245 CLSPYLAIGALSVRQCISILRSEFPHCLESSEQGAFIWLNELIWREFYRHLTESYGKLSR 304

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF  WT KI W      L+ W+QG TGFPI+DAAM+QL   GWMHNRLRMI ASFL K
Sbjct: 305 NQPFHAWTTKIRWRSADDELKCWQQGETGFPIVDAAMKQLLATGWMHNRLRMIVASFLTK 364

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE++FMSQL+DGD ASNNGGWQWAASTG D+ PYFR+FNPT+QG+RFDP G 
Sbjct: 365 DLLIDWREGEKWFMSQLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFDPNGD 424

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+ EL +VP +YIH PH W   N  +LNYP PIVDHK+A    +  +  AK
Sbjct: 425 FIRKWIKELKDVPNKYIHTPHLWDGAN--TLNYPKPIVDHKQARLLAIETFKQAK 477


>gi|149377119|ref|ZP_01894869.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
 gi|149358655|gb|EDM47127.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
          Length = 466

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 189/471 (40%), Positives = 268/471 (56%), Gaps = 8/471 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW RNDLRI DN AL AAC     +V A FI TP QW++H  S  +  F+      +
Sbjct: 2   TQLVWFRNDLRIADNAALTAACKQ-QQQVQACFIVTPTQWQEHDWSPARVQFVLDHANAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++ GI   +   + F DS+E L+ +C ++ +  + +N +Y +NE RRDK ++  L 
Sbjct: 61  SEELAKLGISLSFITATTFADSVEKLEKFCRRESIRHVHFNEEYGVNERRRDKAVKHALD 120

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V    + D  + P G+IL    + Y V+TPF +     + +A     P+P   +   
Sbjct: 121 EIGVAVNKYRDQTVAPVGNILTQQGEPYSVFTPFSRRWRSWIDEAQPTLFPIPKP-VGDT 179

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V P +              +   GE  A   L +F  +    Y   RD+P++ GTS LSP
Sbjct: 180 VEPPHYEGLSKSFDNPPPRLVETGEDAAHRQLEQFLDDHAGDYKNLRDLPSVDGTSLLSP 239

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+ GVLS +QC    ++     +   + G  +W NE+ WR+FY +++  YP + M + F
Sbjct: 240 YLANGVLSGKQCLIAARQN--QGMGGNQEGLVTWTNEIAWRDFYINILYHYPRISMHRAF 297

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P TE ++WN      +AWK G TG PI+DAAMRQLN  GWMHNRLRMITA FL K+L +
Sbjct: 298 KPETEALKWNTPGENFEAWKAGNTGIPIVDAAMRQLNQTGWMHNRLRMITAMFLTKNLFI 357

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE YFMS+L+DG LASNNGGWQW+ASTG D+ PYFR+FNP  Q +RFDP G FIR 
Sbjct: 358 DWRLGEAYFMSKLVDGFLASNNGGWQWSASTGTDAAPYFRVFNPATQSERFDPDGEFIRK 417

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++PE+  +  + IH P        +   YP P+VD K++    + ++ A K
Sbjct: 418 YVPEIAKLDNKRIHQPWV---GGVIPGGYPRPVVDLKESRKEAIAKFQALK 465


>gi|293609792|ref|ZP_06692094.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
 gi|292828244|gb|EFF86607.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
          Length = 480

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 192/479 (40%), Positives = 272/479 (56%), Gaps = 15/479 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ D+ AL+ A        I + I +PEQW+ H  +  + +F    L Q++
Sbjct: 6   QLIWFRQDLRVRDHAALWHASQ--QGPCIGLIILSPEQWKMHHDAPIKINFYLRQLQQLK 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K L Q  I         + D  +++     Q  +  ++ N +  +NE++RDK ++  L  
Sbjct: 64  KELEQLNIPLIIQVIPYWKDIADYIGELSTQLNIENVYSNIEIGVNELKRDKTVQDFLNQ 123

Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187
           +      F D  + P  SI N + Q Y+V+  F+KA    L +    +  P+P  + + P
Sbjct: 124 QGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQSSYP 183

Query: 188 VTPSNIPRFFDYPFQAI---------DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            + S I        +A            ++P GE  AL  L  F K+++  Y  +RD P 
Sbjct: 184 ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDRLSDYKLERDFPN 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTSQLSPYL+IG+LS RQC   L             G  +WL+ELIWREFY+H++  +
Sbjct: 244 VRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELIWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+WN +   L AW+ G TG PIIDA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLIAWQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWR+GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           DP G +IR W+ EL ++  + IH P+S   K ++ LNYP PIVD K+     +  + + 
Sbjct: 424 DPNGDYIRQWVEELAHLDNKAIHEPYS--TKTNIQLNYPKPIVDLKETRLKAIETFKSI 480


>gi|323496501|ref|ZP_08101559.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
 gi|323318778|gb|EGA71731.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
          Length = 474

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 218/474 (45%), Positives = 291/474 (61%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN A  AA  NS+  V+A FIATP+ W QH ++  Q+  I   L ++
Sbjct: 1   MRLVWFRRDLRTIDNTAFIAAI-NSNEPVVAAFIATPDSWSQHHMAPMQADLIKRRLFEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           Q  L+  G+   Y + S++  S++ + ++  Q  VT +  N++YEINEVRRD   E+ L 
Sbjct: 60  QNDLASLGVPLIYAETSDYASSVDVVCNWVKQYSVTSVHLNKEYEINEVRRDDKAEQALT 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  V+    DD     PGS++N     +KV+TP+++A +Q L Q  ++   V A+     
Sbjct: 120 RLDVVLHRHDDKCQFIPGSVVNKQGHYFKVFTPYKRAYLQKLEQFPVQVQKVTAVNGQKA 179

Query: 188 VTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                     D  F+        + +  +  L  LR F KE    Y ++RD PAI+GTS+
Sbjct: 180 KVDECDLFSKDCSFRYPTEESQAYQVSTEQILDQLRSFVKEHSDDYQDERDFPAIEGTSR 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LS RQC  RL  +    L     G  +WL+ELIWREFY+HL+ F P +  G
Sbjct: 240 LSPYLAIGALSVRQCMARLLYQQTAPL---SEGRQTWLSELIWREFYQHLLYFEPKLSRG 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+PW   + W      ++AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI ASFLVKD
Sbjct: 297 ESFLPWGVHLRWENCPRRIKAWQQGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L VDWR+GE+YFMS+L+DG+ A+NNGGWQW ASTG D  PYFRIFNPT QG+RFDP+G F
Sbjct: 357 LQVDWRVGEDYFMSKLVDGEYAANNGGWQWCASTGCDGQPYFRIFNPTTQGERFDPKGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R W+PEL ++P + IH P  WL       +YP PIVDHK     TL  Y  AK
Sbjct: 417 VRRWVPELADLPDKQIHQPSKWLSVK--GSSYPAPIVDHKVQREITLANYKNAK 468


>gi|330502050|ref|YP_004378919.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
           NK-01]
 gi|328916336|gb|AEB57167.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
           NK-01]
          Length = 478

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 191/477 (40%), Positives = 271/477 (56%), Gaps = 7/477 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R+DLR+ DN AL  A +      IA+++ TP+QW++H  +  +  F   +L ++ 
Sbjct: 3   QLMWFRSDLRVQDNTALSQAMNRGAT--IALYLITPDQWQRHDDAPCKVDFWLRNLRELS 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K+L++  +     QC ++ D    +   C +  +  +  N +Y INE  RD+ +   L Q
Sbjct: 61  KALAELNVPLLVRQCHDWGDVPVQVADVCQEHTICAVHVNEEYGINESLRDRRVSAYLSQ 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   S  D +L  PGS+L  +   ++VY+ FRK   + L  A    +  P  +    V
Sbjct: 121 QAIAWHSHLDQILFKPGSVLTRSGGYFQVYSQFRKVCYERLHSALPALVTQPKAQTPMDV 180

Query: 189 TPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +  + F  P +++  ++P GEQ AL  L +F  E+V +Y ++RD PA  GTSQL
Sbjct: 181 KSDIIPDSVKGFATPSESLRLLWPAGEQAALQRLERFADEQVAFYKDERDFPAKPGTSQL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL+ G+LSPRQC +               G  +W+NEL+WREFY+H++  YP V   +
Sbjct: 241 SAYLAAGILSPRQCLHAALSANRGEFDSGNQGVITWINELLWREFYKHILVGYPRVSRHR 300

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P TE + W      L AW++G TG PIIDAAMRQL   GWMHNRLRMI A FL K+L
Sbjct: 301 AFRPETEAVPWRNAPEELAAWQEGRTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTKNL 360

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP  Q ++FDP G FI
Sbjct: 361 LIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPISQSQKFDPDGQFI 420

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           R W+PEL  +  + IH P S L        YP PIVD  ++    L  +     + +
Sbjct: 421 RQWVPELAGLNKRDIHDP-SALGGLFAPSGYPRPIVDLARSRERALAAFKNLSAREV 476


>gi|237807886|ref|YP_002892326.1| Deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187]
 gi|237500147|gb|ACQ92740.1| Deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187]
          Length = 465

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 213/468 (45%), Positives = 287/468 (61%), Gaps = 6/468 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW R+DLR+ D+ ALYAA  + +  + A++  TPEQW++  ++  ++  I   L Q+
Sbjct: 2   TSLVWFRDDLRVHDHPALYAASLHPE-PLQAIYFVTPEQWKKQDLAPVRADLIARQLNQL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            ++L+  GI F     +++      L SYC Q  V++LF NR   I E+ RD  ++++  
Sbjct: 61  GEALAALGIPFSVLTVADYQQIPARLASYCQQHEVSQLFVNRDIGIYELARDLSVQQQCD 120

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I  + FD   +  PGS+L  + +M+KV+TPF KA ++ L     +  P P+ R    
Sbjct: 121 ATGIRVQWFDARCVFAPGSVLTGSKEMFKVFTPFSKAWLKKLAAEGYQVWPKPSARGG-- 178

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              S      DYP +     +P+GE   L  L+ FC EK+  Y EQRD PA  GTS++SP
Sbjct: 179 -ILSWSSVSIDYP-RVDSSDWPVGEAAVLQQLQDFCAEKLRQYDEQRDFPACPGTSRISP 236

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL++G++S RQC   ++     L  +  +  F WLNELIWREFY+HL+  +P V   K F
Sbjct: 237 YLTLGIISVRQCLAAIEAALGQLPFERGAPGFVWLNELIWREFYQHLLVAFPHVSKHKAF 296

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P T+ I W  D     AW +G TG+PI+DAAMR LN  GWMHNRLRMI ASFL KDL +
Sbjct: 297 KPETDHIRWLWDDARFTAWCEGKTGYPIVDAAMRCLNQTGWMHNRLRMIVASFLTKDLHI 356

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE YFM  L+DG+LA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD QG FI+ 
Sbjct: 357 DWRLGERYFMQHLIDGELAANNGGWQWAASTGADAAPYFRIFNPTTQGQRFDEQGQFIKQ 416

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           WLPEL  VP +YIH PH WL   D   +YP PIVDH ++    L  + 
Sbjct: 417 WLPELELVPAKYIHTPHDWLKVFDPQDSYPAPIVDHSESRTIALALFQ 464


>gi|299769190|ref|YP_003731216.1| deoxyribodipyrimidine photo-lyase [Acinetobacter sp. DR1]
 gi|298699278|gb|ADI89843.1| deoxyribodipyrimidine photo-lyase [Acinetobacter sp. DR1]
          Length = 480

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 192/479 (40%), Positives = 273/479 (56%), Gaps = 15/479 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ D+ AL+ AC    +  I + I +PEQW+ H  +  + +F    L Q++
Sbjct: 6   QLIWFRQDLRVRDHAALWHACQQGPS--IGLVILSPEQWKIHHDAPIKINFYLRQLQQLK 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K L +  I         + D  +++     Q  +  ++ N +  +NE++RDK +++ L  
Sbjct: 64  KELEKLNIPLIIQVIPYWKDIADYICELTHQLHIENVYSNIEVGVNELKRDKTVQQALNQ 123

Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187
           +      F D  + P  SI N + Q Y+V+  F+KA    L +    +  P+P  + + P
Sbjct: 124 QGKELFLFHDRTIFPLRSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQKSNP 183

Query: 188 VTPSNIPRFFDYPFQAI---------DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            + SNI        +A            ++P GE  AL  L  F +  +  Y  +RD P 
Sbjct: 184 ESDSNIKSLSLEDIEAFFDSSISKDQQNLWPTGEGFALEQLDVFIENHLSDYKLERDFPN 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTSQLSPYL++G+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 VKGTSQLSPYLNLGILSIRQCLQALFRTEHGNFHIANEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+WN +   L AW+ G TG PIIDA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIIDAGMRQLQKTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRIGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           DP G +IR W+ EL ++  + IH P+S   K  L LNYP PIVD K+     +  + + 
Sbjct: 424 DPNGDYIRQWVDELADLDNKMIHEPYS--SKTPLQLNYPKPIVDLKETRMKAIETFKSI 480


>gi|330900868|gb|EGH32287.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 482

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 194/473 (41%), Positives = 272/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L    +     +  ++D + E L   C Q +V  L  N++Y INE RRD+ + K ++
Sbjct: 59  EKALGALNVPLLIREADSWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVHKAME 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S+ D +L  PGSIL      ++V+T F+K     L +A   ++  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHTVRTPKAQPAQS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +  + F  P  A+  ++P GE  A   +  F  E++ YY  +RD PA  GTSQ
Sbjct: 179 IKSDAIPDQAKGFATPSIALRDLWPAGEAEARRRMDAFADEQISYYKTERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGDVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE + W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALNWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ WLPEL ++  + IH P    D    + +YP PIVD  K+    L  + A 
Sbjct: 419 IKRWLPELADMNKKQIHDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 470


>gi|325123018|gb|ADY82541.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 480

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 189/479 (39%), Positives = 273/479 (56%), Gaps = 15/479 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ D+ AL+ A        I + I +PEQW+ H  +  + +F    L Q++
Sbjct: 6   QLIWFRQDLRVRDHAALWHASQ--QGPCIGLIILSPEQWQTHHDAPIKINFYLRQLQQLK 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K L Q  I         + D  +++    +Q  +  ++ N ++ +NE++RDK ++  L  
Sbjct: 64  KELEQLNIPLIIQVIPYWKDIADYIGELSIQLNIENVYSNIEFGVNELKRDKTVQDFLNQ 123

Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187
           +      F D  + P  SI N + Q Y+V+  F+KA    L +    +  P+P  + + P
Sbjct: 124 QGKELFLFHDRTIFPLCSIRNQSQQPYQVFGAFKKACYSKLDISGLPQCYPIPEKQSSYP 183

Query: 188 VTPSNIPRFFDYPFQAI---------DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            + S I        +A            ++P GE  AL  L  F K+ +  Y  +RD P 
Sbjct: 184 ASFSKINSLTLEDIEAFFDPSVSKEQQGLWPAGENFALEQLDIFIKDHLSDYKLERDFPN 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTSQLSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 VRGTSQLSPYLNIGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+W+ +   L AW+ G TG PIIDA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKNTQKIKWSHNPEHLTAWQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K++L+DWR+GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNMLIDWRVGEQWFMEHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           DP G +IR W+ EL ++  + IH P+S   K ++ LNYP PIVD K+     +  + + 
Sbjct: 424 DPNGDYIRQWVQELAHLDNKAIHEPYS--TKTNIQLNYPKPIVDLKETRLKAIETFKSI 480


>gi|62179298|ref|YP_215715.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62126931|gb|AAX64634.1| deoxyribodipyrimidine photolyase (photoreactivation) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 446

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 231/433 (53%), Positives = 308/433 (71%), Gaps = 4/433 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + ++C Q  V+ LFYN QY+ NE +RD  +EK 
Sbjct: 61  ALQAALAEKGIPLLFHEVADFNASIETVKNFCRQHDVSHLFYNYQYQFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENSHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDRDGEFI 417

Query: 426 RHWLPELNNVPTQ 438
           R WLP L ++P +
Sbjct: 418 RQWLPALRDMPWK 430


>gi|312883049|ref|ZP_07742780.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369209|gb|EFP96730.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 476

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 209/479 (43%), Positives = 286/479 (59%), Gaps = 12/479 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW R DLR+ DN AL  AC + +  V+ V+ ATP+ W +H +SA Q+  IY  L  +
Sbjct: 1   MNVVWFRRDLRVEDNTALIEACQSGE-PVVGVYFATPKTWERHSLSAIQADLIYRRLFAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L +  I   Y +  ++ D +E +         + LF+N+QYE +EV+RD  + + L+
Sbjct: 60  QDDLRKLNIPLYYAEVDSYKDCVELIADVMTSSSASGLFFNKQYEFDEVQRDSAIVQLLK 119

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V C + +D   LPPGS+LN     +KV+TPF++A +Q +    L  +       T P
Sbjct: 120 ESNVDCSAHEDKCFLPPGSVLNKQGGYFKVFTPFKRAYLQQMEVTPLNVIKAKKQSNTLP 179

Query: 188 VTPSNIPRFF--DYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              +   R F  D PF   +     + +     +  LR+F ++KV  Y E RD P++  T
Sbjct: 180 TLDNTRLRLFSQDSPFSYPRVSSNNYKVETTEVIQALREFEEKKVKLYAENRDYPSVDAT 239

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL++G+LS RQC  R+        +    G   W +ELIWREFY+HL  F P + 
Sbjct: 240 SILSPYLAVGILSIRQCMARV---MYQQQLPLSGGREVWQSELIWREFYQHLAYFEPKLS 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G+ F PW E + W      L+AWK G TG+PI+DAAM+QLN  GWMHNRLRMI ASFL+
Sbjct: 297 KGESFNPWGEHLRWENSQVFLEAWKSGKTGYPIVDAAMKQLNETGWMHNRLRMIVASFLI 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL +DWR+GE+YFMS+L+DGD  +NNGGWQW +STG D  PYFRIFNP  QG+RFDP G
Sbjct: 357 KDLHIDWRVGEQYFMSKLVDGDYPANNGGWQWCSSTGCDGQPYFRIFNPITQGERFDPDG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            FI  WLP+L  VP +++H P  W   + L   YP PIVDHK     TL+ Y  AK+ S
Sbjct: 417 RFIIRWLPQLAEVPKKFLHQPWKWSRASQLK--YPAPIVDHKVQRGITLDLYKQAKEYS 473


>gi|238920766|ref|YP_002934281.1| deoxyribodipyrimidine photo-lyase [Edwardsiella ictaluri 93-146]
 gi|238870335|gb|ACR70046.1| deoxyribodipyrimidine photo-lyase [Edwardsiella ictaluri 93-146]
          Length = 471

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 242/467 (51%), Positives = 316/467 (67%), Gaps = 3/467 (0%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +WLR+DLR+TDN+AL+AAC +  A+V+A+++ATP QW    ++ RQ+ FI+ +LL +Q +
Sbjct: 1   MWLRSDLRMTDNRALHAACADVRARVVALYVATPRQWLAQEMAPRQAQFIWQNLLALQVT 60

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L Q+ I        ++      +   CL++R   LF NRQYE+NE RRD  L   L   +
Sbjct: 61  LGQRQIPLYCLSVDDYAAQARAVREVCLRERADALFVNRQYELNERRRDDALAAAL--TI 118

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
            C  FDD++LL PG++L  A QM+KV+TPF++A ++ L+ ADLR LP P+ R  G   P 
Sbjct: 119 PCHFFDDALLLAPGTVLTGAGQMFKVFTPFKRAFLRGLMSADLRVLPAPSPRQPGSAPPV 178

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
              RF     +    +FP GE  A   L +FC   +  Y  +RD PA  GTSQLSPYL++
Sbjct: 179 QAERFNYPDAEVDSALFPAGEAAAQTRLVQFCHGALAAYAARRDFPAQAGTSQLSPYLTL 238

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           GVLSPRQC   L+ + + +     SGA +WLNELIWREFYRHL+  +P +C  +PFIPWT
Sbjct: 239 GVLSPRQCLAALQPQAL-VSPGLSSGAEAWLNELIWREFYRHLLVAWPDLCRHRPFIPWT 297

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
            +I W  D   L  W+QG TGFP++DAAMRQLN  GWMHNRLRM+TASFLVKDLL+DWR+
Sbjct: 298 ARIRWRDDPAGLLRWQQGMTGFPLVDAAMRQLNRCGWMHNRLRMLTASFLVKDLLIDWRL 357

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           GE YF+ QLLDGDLA+NNGGWQWAASTG+D+ PYFRIFNP +QG+R+DPQG FIR WLPE
Sbjct: 358 GERYFLRQLLDGDLAANNGGWQWAASTGSDAAPYFRIFNPRVQGQRYDPQGQFIRRWLPE 417

Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           L +VP   IH P  W  +    L+YP P VDH +A   TL  +  A+
Sbjct: 418 LRDVPDSDIHHPQRWALRRQRVLDYPDPQVDHARARQDTLLAFARAR 464


>gi|107099673|ref|ZP_01363591.1| hypothetical protein PaerPA_01000691 [Pseudomonas aeruginosa PACS2]
 gi|254244448|ref|ZP_04937770.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192]
 gi|126197826|gb|EAZ61889.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192]
          Length = 481

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 193/474 (40%), Positives = 274/474 (57%), Gaps = 8/474 (1%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
             + ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +
Sbjct: 2   NGLPMNLIWFRCDLRTTDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRN 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L+   I      C ++  + E +   C +  V  +  N++Y +NE RRD+ + 
Sbjct: 60  LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVP 180
           +RL+ + +   S  D +   PGS+L      ++V++ FRK   + L QA           
Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQ 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                      +    F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ 
Sbjct: 180 PPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALP 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP 
Sbjct: 240 GTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPR 299

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRLRM+ A F
Sbjct: 300 VSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +RFDP
Sbjct: 360 LSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDP 419

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +G FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  +
Sbjct: 420 RGEFIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAF 471


>gi|296391481|ref|ZP_06880956.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAb1]
          Length = 481

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 192/474 (40%), Positives = 274/474 (57%), Gaps = 8/474 (1%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
             + ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +
Sbjct: 2   NGLPMNLIWFRCDLRTTDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRN 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L+   I      C ++  + E +   C +  +  +  N++Y +NE RRD+ + 
Sbjct: 60  LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVG 119

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVP 180
           +RL+ + +   S  D +   PGS+L      ++V++ FRK   + L QA           
Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQ 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                      +    F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ 
Sbjct: 180 PPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALP 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP 
Sbjct: 240 GTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPR 299

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRLRM+ A F
Sbjct: 300 VSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +RFDP
Sbjct: 360 LSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDP 419

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +G FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  +
Sbjct: 420 RGEFIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAF 471


>gi|15599855|ref|NP_253349.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1]
 gi|9950915|gb|AAG08047.1|AE004880_3 deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1]
          Length = 481

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 193/474 (40%), Positives = 274/474 (57%), Gaps = 8/474 (1%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
             + ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +
Sbjct: 2   NGLPMNLIWFRCDLRTTDNSALLAAA--DGRPCLALYLLSPAQWREHDDAPCKVDFWLRN 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L+   I      C ++  + E +   C +  V  +  N++Y +NE RRD+ + 
Sbjct: 60  LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVP 180
           +RL+ + +   S  D +   PGS+L      ++V++ FRK   + L QA           
Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQ 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                      +    F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ 
Sbjct: 180 PPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALP 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP 
Sbjct: 240 GTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPR 299

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRLRM+ A F
Sbjct: 300 VSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +RFDP
Sbjct: 360 LSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDP 419

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +G FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  +
Sbjct: 420 RGEFIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAF 471


>gi|229588295|ref|YP_002870414.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25]
 gi|229360161|emb|CAY47018.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fluorescens SBW25]
          Length = 481

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 190/473 (40%), Positives = 268/473 (56%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL+WLR DLR+ DN AL AA       + AV++ TPEQW  H  +  +  F   +L  +
Sbjct: 1   MHLIWLRTDLRLHDNTALAAASQRG--PIAAVYLITPEQWLAHDDAPCKVDFWLRNLHAL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +  I       + +D +   L   C +  V  +  N +Y I+E RRD  + K L+
Sbjct: 59  SATLGELNIPLLIRTAATWDQAPRVLSQLCQELSVESVHVNEEYGIHESRRDAAVSKALE 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + +   S+ D +   PGS+L      ++V++ FRK     L  A  R +  P  +    
Sbjct: 119 AQGVSFHSYLDQLFFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRIVAAPKAQAALT 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP     F+ P QA+  ++P GE  A   L  F  +++ YY ++RD PA  GTSQ
Sbjct: 179 LKSDPIPTTVEGFEPPSQALRALWPAGEDEARRRLDAFADQQISYYKDERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +   +           GA +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSAYLAAGVVSPRQCLHAALQTNGGEFESGDMGAITWINELLWREFYKHILVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE + W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEAVAWRNAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIF+P  Q ++FD  G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSEKFDSDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+HWLPEL  +  + +H P +      ++ +YP  IVD KK+    L  + + 
Sbjct: 419 IKHWLPELAALNKKDVHNPDAAGGLFGVA-DYPRSIVDLKKSRERALAAFRSL 470


>gi|218893757|ref|YP_002442626.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58]
 gi|218773985|emb|CAW29800.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58]
          Length = 481

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 193/474 (40%), Positives = 274/474 (57%), Gaps = 8/474 (1%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
             + ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +
Sbjct: 2   NGLPMNLIWFRCDLRTTDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRN 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L+   I      C ++  + E +   C +  V  +  N++Y +NE RRD+ + 
Sbjct: 60  LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVP 180
           +RL+ + +   S  D +   PGS+L      ++V++ FRK   + L QA           
Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQ 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                      +    F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ 
Sbjct: 180 PPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALP 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP 
Sbjct: 240 GTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPR 299

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRLRM+ A F
Sbjct: 300 VSRHRPFREETEALCWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +RFDP
Sbjct: 360 LSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDP 419

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +G FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  +
Sbjct: 420 RGEFIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAF 471


>gi|83644572|ref|YP_433007.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
 gi|83632615|gb|ABC28582.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
          Length = 481

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 199/480 (41%), Positives = 273/480 (56%), Gaps = 10/480 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M   L W RNDLR  DN ALYAA   +   ++++IA F+ +PEQWR H ++  +  F+  
Sbjct: 1   MPRTLHWFRNDLRTRDNPALYAAAQRAREQNSELIACFLVSPEQWRSHDMADIKLDFMLR 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L  +Q  L++  I         FD++   L +   Q + + L +N ++ +NE RRDK +
Sbjct: 61  NLKALQAELAKLNIPLFILDAPRFDEAPTKLLTLMQQHQCSALTFNEEFGVNERRRDKAV 120

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L    +    F D  +LP GSI       Y V+TP+++A      +  +   P PA 
Sbjct: 121 KETLNAEGLEALKFRDQSILPAGSIRTGQGTPYAVFTPYKRAWFSQCPE-HIELWPEPAK 179

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           + +   TP          F  +    +  GE  AL  L  F + KV  Y EQRD PAI G
Sbjct: 180 QPSPMQTPEGDVPESVSGFDKVSSQTYAAGEDAALQKLDDFLEHKVDRYHEQRDFPAIDG 239

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            SQLSPYL++GVLS RQC++   +           G  +W+NELIWR+FY H++  +P +
Sbjct: 240 VSQLSPYLALGVLSGRQCFHAA-QRHRHASPNASEGVDTWINELIWRDFYIHILYDFPRI 298

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            M K F   TE ++W        AW +G TG PI+DAAMRQLN  GWMHNRLRMI A FL
Sbjct: 299 SMTKAFKQETENLQWRHSEKDFLAWCEGKTGIPIVDAAMRQLNQTGWMHNRLRMICAMFL 358

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+DWR+GE YFM +L+DG LA+NNGGWQW+ASTG D+ PYFR+FNP  Q +RFDP 
Sbjct: 359 SKNLLLDWRLGERYFMCKLIDGHLAANNGGWQWSASTGVDAAPYFRMFNPVAQSERFDPN 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           G FIRH+ PEL  +  + IH P S +      L YP+PIVD K +    L  +   K  +
Sbjct: 419 GDFIRHYAPELAELSAKLIHQPPSDVRSR---LGYPVPIVDLKASRERALQAFRELKNST 475


>gi|116052805|ref|YP_793122.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588026|gb|ABJ14041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 481

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 192/474 (40%), Positives = 274/474 (57%), Gaps = 8/474 (1%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
             + ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +
Sbjct: 2   NGLPMNLIWFRCDLRTTDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRN 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L+   I      C ++  + E +   C +  +  +  N++Y +NE RRD+ + 
Sbjct: 60  LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVG 119

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVP 180
           +RL+ + +   S  D +   PGS+L      ++V++ FRK   + L QA           
Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQ 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                      +    F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ 
Sbjct: 180 PPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRGFADQHLADYHERRDFPALP 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP 
Sbjct: 240 GTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPR 299

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRLRM+ A F
Sbjct: 300 VSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +RFDP
Sbjct: 360 LSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDP 419

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +G FIRHWLPEL  +  + IH P S        ++YP P+VD K +    L  +
Sbjct: 420 RGEFIRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAF 471


>gi|260774030|ref|ZP_05882945.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14]
 gi|260610991|gb|EEX36195.1| deoxyribodipyrimidine photolyase [Vibrio metschnikovii CIP 69.14]
          Length = 475

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 216/474 (45%), Positives = 289/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL  A  + ++ V A+F+ATP QW++H ++  Q+ FIY  L  +
Sbjct: 1   MKLVWLRRDLRAIDNTALQQAIASGES-VSALFVATPHQWQRHDLAPIQADFIYRRLFTL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   I   Y Q  ++  + + +  +     V ++  NR YE NE +RD   E+ L 
Sbjct: 60  QQELAALNIPLFYKQVDDYQQASQVVSEFAQSLSVNQVLVNRDYEWNEQQRDSQTEQALS 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   + DD  LL PG +LN   + +KV+TPF++A +       + S P  A+     
Sbjct: 120 TLGIDWLACDDKCLLTPGQVLNKQGEYFKVFTPFKRAWLSRFTPPVIVSTPTAAVNPLLD 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              + +    + F YP  + D  +P+  +   H LR+FC++ +  Y +QRD PA +GTS+
Sbjct: 180 SEHNALWNERQDFAYPRVSSDQ-WPVDFETVRHQLRQFCQQSIDDYHQQRDFPAQEGTSR 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG+LS RQC  R+  +    L+   SGA  WL+ELIWREFY+HL+ F   +  G
Sbjct: 239 LSPYLAIGMLSVRQCIARMYAQSQSGLL--SSGAEIWLSELIWREFYQHLLVFESKLSKG 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           K F  W ++++W+ D      W +G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL KD
Sbjct: 297 KAFHSWGDQLQWSDDKQAFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DW  GE YFM QL+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG+RFDP G F
Sbjct: 357 LHIDWHWGERYFMQQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGERFDPSGQF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +VPT YIH P  W      SL YP P+VDHK A   TL  Y  AK
Sbjct: 417 IRQWVPELASVPTAYIHTPWKW--PGVKSLLYPSPMVDHKVAREVTLRLYKEAK 468


>gi|104780105|ref|YP_606603.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Pseudomonas entomophila L48]
 gi|95109092|emb|CAK13789.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Pseudomonas entomophila L48]
          Length = 484

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 198/474 (41%), Positives = 275/474 (58%), Gaps = 9/474 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLRI DN AL AAC       +A++IA+P QW++H  +A +  F   +L  +
Sbjct: 1   MQLIWLRSDLRIDDNTALSAACQ--GGPAVALWIASPGQWQRHDDAACKVDFWLRNLRLL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            ++L    I         + +  + L   C + ++  + +N +Y +NE  RD      L+
Sbjct: 59  SQALEALNIPLLVRTTDTWREVPQVLLEACREHQIGTVHWNEEYGVNETLRDSAARALLE 118

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   +  D +L  PGS+L    Q ++V++ F++  +++L ++       P  +    
Sbjct: 119 QSGVATHTHLDQLLFKPGSVLTRGGQYFQVFSQFKRVCLEHLHRSLPARAQRPKRQAPLD 178

Query: 188 VTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP   D    P Q++   +P GE+ A   L +F  E V  Y + RD+PA  GTSQ
Sbjct: 179 IASDPIPEQIDGFAIPPQSLRDHWPAGEEEAQRRLSRFIDETVEDYPQLRDLPAKAGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GV+SPRQC +              +G  +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSPYLAAGVISPRQCLHAALASNHGEFDSGNAGVQTWVNELLWREFYKHILVGYPQVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W      L+AWKQG TGFPIIDAAMRQL   GWMHNRLRMI A FL K+
Sbjct: 299 RAFRVHTEALPWRNAPDDLEAWKQGRTGFPIIDAAMRQLLETGWMHNRLRMIVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNPT Q +RFDP+GTF
Sbjct: 359 LLIDWREGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPTTQSQRFDPKGTF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYY 475
           IR WLPEL  +  + IH P    D    N+ S NY  PIVD   +    L+ + 
Sbjct: 419 IRQWLPELQAMDEKTIHRPVKSADLFVTNNYSSNYTSPIVDLDSSRQRALDAFK 472


>gi|315182348|gb|ADT89261.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio furnissii NCTC 11218]
          Length = 475

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 215/474 (45%), Positives = 282/474 (59%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL  A   SD  V A+F+ATP QW+QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWLRRDLRSVDNTALNEALA-SDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           Q  L+   +   Y +   F ++++ +          ++  NR YE+NE +RD    +RL 
Sbjct: 60  QTELAALNVPLLYREVVTFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLH 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q  +  +SFDD  ++PPGS+ N     +KV+TPF++A +       +++           
Sbjct: 120 QQGIEWQSFDDKCVMPPGSVRNKQGDYFKVFTPFKRAWLTQFSPPRIQASRAAKPWSLPE 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              S +    + F +P  + D  +P+        LR FC+E++  Y +QRD PA  GTS 
Sbjct: 180 ALQSLLWCESQPFTHPRVSSD-AWPVDFDTIRGRLRAFCQEQLDDYKQQRDFPAQDGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LSPRQC  R+  E    +     GA +WL+ELIWREFY+HL+ F P +   
Sbjct: 239 LSPYLAIGALSPRQCIARVYAE--SAMGALSDGAQTWLSELIWREFYQHLLTFEPKLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           K F+ W  ++ W  D      W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 KDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFM  L+DGD A+NNGGWQW ASTG D  PYFRIFNPT QG++FDPQG F
Sbjct: 357 LHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGEKFDPQGRF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL  VP  +IHAP +W   N L   YP PIVDHK     TL  Y  AK
Sbjct: 417 IRQWVPELATVPEAHIHAPSNWGGVNSLL--YPQPIVDHKAEREVTLRLYKEAK 468


>gi|269104447|ref|ZP_06157143.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161087|gb|EEZ39584.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 494

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 217/486 (44%), Positives = 301/486 (61%), Gaps = 14/486 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S +L+W R+DLRITDN AL   C+ S   VIA++IATP QW QH ++  Q   I   L  
Sbjct: 13  SHNLMWFRSDLRITDNTALSEVCNQS-LPVIALYIATPMQWHQHHVAPIQVDLIKRRLAV 71

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L++  I     +  +FD ++E ++  CL   +  +  N QY +NE  RD+ L   L
Sbjct: 72  LTEQLAELSIPLIVLETEDFDSTVEKIEEICLMFNIASVHCNNQYLVNEEHRDQKLAANL 131

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------LPV 179
           +  ++    +DD   L PGS+LN   + +KV+TP+ KA ++   Q  +            
Sbjct: 132 KRYQISLVQYDDDCALAPGSVLNKQGEPFKVFTPYSKAWLKQYKQQTVEPTAMVGNTHKE 191

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            +  +   +      + +D+ +  +  + +P+ ++  L  L  FC +KV  Y +QRD P+
Sbjct: 192 LSQEIEELLAVCGTVQHYDFQYPQVSSLTWPVDDEVILQHLYSFCCDKVGVYHQQRDYPS 251

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAF 297
           ++GTS LSPYL+IG LS RQC   +++     L   K  G F W+NELIWREFY HLMA 
Sbjct: 252 LEGTSTLSPYLAIGALSVRQCLKAVQQVDPSCLEINKECGGFVWVNELIWREFYHHLMAE 311

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y  +C G+PF  +T+ + WN+DSH L+AW+QG TGFPI+DAAMRQL   GWMHNRLRMIT
Sbjct: 312 YKHLCKGQPFQAYTQYVTWNEDSHYLKAWQQGKTGFPIVDAAMRQLQQTGWMHNRLRMIT 371

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDLL+ W  GE +F+  L+DGD ASNNGGWQWAASTG D+ PYFR+FNPT QG+R
Sbjct: 372 ASFLTKDLLLHWHHGERWFLQHLIDGDFASNNGGWQWAASTGTDAQPYFRVFNPTTQGER 431

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP+G FIR W+PEL +VP +YIH PH W   +     YP PI+DHK+A    +  +  A
Sbjct: 432 FDPEGEFIRKWIPELVDVPNKYIHTPHLW---HGDKKGYPAPIIDHKQARLRAIEVFKNA 488

Query: 478 KKQSLL 483
           K+ + L
Sbjct: 489 KEINTL 494


>gi|254228731|ref|ZP_04922154.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25]
 gi|262396547|ref|YP_003288400.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|151938678|gb|EDN57513.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25]
 gi|262340141|gb|ACY53935.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
          Length = 471

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 211/477 (44%), Positives = 284/477 (59%), Gaps = 12/477 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  D+ AL AA  +S   V+A FIATPEQWR+H ++  Q+  I   L  +
Sbjct: 1   MILVWFRRDLRTLDHTALKAAL-DSGQPVVACFIATPEQWREHHMAPMQADLIARRLEYL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L    + F Y +  +F D  E +  +      T +  N  YE+NE   D  + + L 
Sbjct: 60  NDELESLNVPFLYKEVPSFSDCTEVISEWAKTLEATSVMANIHYEVNERELDAQVSEALA 119

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            H +  + F D  + PP ++LN   + +KV+TPF++A +       +      A   +  
Sbjct: 120 SHDIDFELFHDKCVHPPTTVLNKQGEYFKVFTPFKRAWLTQFQMPAVTKPQEQAPLSSKL 179

Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +      RF     F YP ++ +  F     + L  LR+F +E+   Y E+RD PAI GT
Sbjct: 180 LEQLEPIRFSSDFTFSYPRESSEDWF-ASTNDVLKQLREFARERSDAYKEERDFPAIDGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P + 
Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENQQNDL--TEGKATWLSEIIWREFYQHLLVFEPKLV 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            GK FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL 
Sbjct: 297 KGKGFIDWEDKIQWSYDEQAFERWKAGATGYPIVDAAMRQLNQTGWMHNRLRMVVASFLT 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G
Sbjct: 357 KDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            F+RHW+PE+ +VP +YIH P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 417 QFVRHWVPEIKSVPNKYIHKPWTWEGFSLLE--YHKPMVDHKTEREITLRLFKSAKE 471


>gi|153835921|ref|ZP_01988588.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810]
 gi|149750675|gb|EDM61420.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810]
          Length = 471

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 208/477 (43%), Positives = 283/477 (59%), Gaps = 12/477 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  D+ AL AA       V+A F+ATPEQW++H ++  Q+  I   L  V
Sbjct: 1   MILVWFRRDLRTLDHTALKAALDTGQ-PVVACFVATPEQWQEHHMAPMQADLIARRLEHV 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++  I   Y +   FDD  + +  +  +   T +  N  YE+NEV  D+ + + L 
Sbjct: 60  HQELTELNIPLLYKEVPRFDDCTKVICDWADKLNATAVMVNINYEVNEVELDRKVSQALD 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +R +   +F D  +  P ++LN   + +KV+TPF++A +Q        S P     L   
Sbjct: 120 NRGVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFS-LPTVSKPQKQNELPSE 178

Query: 188 VTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              +     FD  F     +     +     + L  LR F +E+   Y  +RD PAI GT
Sbjct: 179 QLAAVKQDGFDADFTFSYPRESSEAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P + 
Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENPQPDL--SEGKATWLSEIIWREFYQHLLVFEPKLV 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G+ FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL 
Sbjct: 297 KGRGFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G
Sbjct: 357 KDLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            F+RHW+PE+ +VP ++IH P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 417 QFVRHWVPEIKSVPNKFIHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471


>gi|119944756|ref|YP_942436.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
 gi|119863360|gb|ABM02837.1| Deoxyribodipyrimidine photo-lyase type I [Psychromonas ingrahamii
           37]
          Length = 453

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 198/471 (42%), Positives = 269/471 (57%), Gaps = 19/471 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HLVW RNDLR +DN ALY AC      V  ++  TP QW+ H ++  Q+ FI  +L  +
Sbjct: 1   MHLVWFRNDLRTSDNSALYYACLKG--PVTGIYFVTPGQWKNHQLAPIQADFIEQNLKVL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L+  GI     + ++F      L        +  +  N + EINE  RD+ ++K   
Sbjct: 59  AEELAALGIPLLIEEVADFSHIPARLKQIQKDHHINTIHANDEPEINEKERDQAVKKA-- 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    +    +L  GS+L     MYKV+T FR A ++ + Q DL  LP PA ++    
Sbjct: 117 -GLPLVLYQCDCILQAGSVLTKQGGMYKVFTAFRNAWMKEVKQTDLTPLPKPADQMPSLN 175

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
              +     +Y  +     +P GE  AL  LR F  + +  Y   RDIP++ GTS LS Y
Sbjct: 176 VSWSKNISVNYD-KKSSQAWPAGETAALRRLRHFLLQDIEDYHHNRDIPSLDGTSGLSAY 234

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  GV+S ++C   +   F D L    S  FSW+NE++WREFYRHLM F P +C GK F 
Sbjct: 235 LKFGVISAKRCVYEVLAAFPDALDAQDSSVFSWINEIVWREFYRHLMIFNPQLCKGKNFN 294

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              + I W+ +    +AW +G TG+ ++DAAMRQLN  GWMHNRLRM+TASFL K LL+D
Sbjct: 295 KLADNITWSNNPDDFKAWCEGRTGYGLVDAAMRQLNQTGWMHNRLRMVTASFLTKHLLID 354

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE YF   L+DGDLASNNGGWQWAASTG D+ PYFRIFNP IQ ++FDP+G FIR +
Sbjct: 355 WRWGEAYFREHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIIQSQKFDPKGLFIRKY 414

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + ELN    + IH P +              IV+HK+A  + L++Y   KK
Sbjct: 415 VKELNGFDNKKIHFPVNA-------------IVEHKQARLNALDRYSVLKK 452


>gi|46107828|ref|XP_380973.1| hypothetical protein FG00797.1 [Gibberella zeae PH-1]
          Length = 635

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 175/486 (36%), Positives = 266/486 (54%), Gaps = 20/486 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLRI+DN+AL  A      +   +IA++I +P+ +  H  +  +  F+  +L  
Sbjct: 144 VHWFKMDLRISDNRALALASDKAKEAGVPLIALYIISPQDYEAHLRAPVRIDFMLRTLSV 203

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKR 126
           +++ L++  I              + +     +   + L+ N +YE++E+RR+   ++  
Sbjct: 204 IKEDLAKLDIPLYVETVEKRKHLPDRILELMDEWGASHLYANMEYEVDELRREAAMIKDF 263

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--------DLRSLP 178
            ++    +   D+ ++PPG +   A + Y VYTP+ K  I ++ +              P
Sbjct: 264 AENGKAFEVVHDTCIVPPGELHTGAGKQYAVYTPWFKTWIAHIHENLDLLELYEPPEKNP 323

Query: 179 VPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             A +    +  + IP      R  D   + +  ++P GE  A   L KFC+E++  Y E
Sbjct: 324 DSARKKFKKLFNAEIPEAPKSKRLGDEEKERLRSLWPCGEHEAKKRLDKFCEERIGNYHE 383

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
           +R+IPA   TS LS +L+ G +S R C    ++      L     G  +W++E+ WR+FY
Sbjct: 384 KRNIPADAATSSLSVHLASGTISARTCVRTARDRNKTKKLNGGNDGIQTWISEVAWRDFY 443

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    I W+ D+    AW +G TGFPI+DAAMRQ+NTIG+MHN
Sbjct: 444 KHVLVNWPYVCMNKPFKPEYSNISWSYDNDHFAAWCEGRTGFPIVDAAMRQMNTIGYMHN 503

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL KDLL+DWR GE+YFM  L+DGD ASNNGGW ++AS G D  PYFRIFNP
Sbjct: 504 RCRMIVASFLAKDLLLDWRKGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRIFNP 563

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHT 470
            +Q ++FDP G +IR W+PEL ++  + IH P++           YP PIV HK      
Sbjct: 564 LLQSEKFDPDGDYIRKWVPELKDLDNKAIHDPYNRKAGPQAKKKGYPEPIVTHKDCRERA 623

Query: 471 LNQYYA 476
           L  Y  
Sbjct: 624 LAAYKE 629


>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
 gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
          Length = 479

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 185/481 (38%), Positives = 245/481 (50%), Gaps = 20/481 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + + W R DLR+ DN AL AA   S   VI VFI           S  ++ F+  SL  +
Sbjct: 1   MLIHWFRRDLRLRDNTALLAAADASGGAVIPVFIFDDAILGGRFASPARTQFLLDSLTAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L   G+     +     + +  L +   +     + +NR Y    V+RD  +++ L+
Sbjct: 61  DGELRSLGLHLVLRRG----EPLTTLMALLRESGAHGVTWNRDYTPYAVQRDSTIKRELR 116

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                 +S+ D+V+     ++  A Q Y VYTP+ K     L    +R   VP +     
Sbjct: 117 AAGYRAESYKDAVIFEMNEVVTAAGQPYTVYTPYAKRWRARLESEPVRVQGVPELTAIPL 176

Query: 188 VTPSNIPRFFDY--PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                +P   D         P F  GE  A   L  F    +  Y   RD+ AI GTS+L
Sbjct: 177 PASDPLPALNDLLPTAPTSVPRFATGETAARAALEHFIHNAIANYATARDLVAIAGTSRL 236

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  GVLSPRQC    +            G  SW+ ELIWREFY  ++  +P    G 
Sbjct: 237 SPYLRFGVLSPRQCVVAARAA------PSGPGPESWIGELIWREFYIQVLYHFPHALRG- 289

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P  ++I W  D  L  AW+QG TG+PI+DAAMRQL   GWMHNR RMI ASFL KDL
Sbjct: 290 SFKPVYDRIVWPNDPALFAAWQQGRTGYPIVDAAMRQLQQEGWMHNRARMIVASFLTKDL 349

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGD A+NNGGWQWAA TG D+ PYFRIFNP  QG++FDP G ++
Sbjct: 350 LIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPYFRIFNPVSQGQKFDPDGAYV 409

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R ++PEL  VPT+YIH PH             +  +Y  P+VDH       L  Y +A +
Sbjct: 410 RRYVPELAGVPTRYIHEPHKMPPSEQVRAGVQIGRDYSAPVVDHATQRLRALELYRSATR 469

Query: 480 Q 480
            
Sbjct: 470 A 470


>gi|91794189|ref|YP_563840.1| deoxyribodipyrimidine photolyase [Shewanella denitrificans OS217]
 gi|91716191|gb|ABE56117.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella denitrificans
           OS217]
          Length = 497

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 201/486 (41%), Positives = 274/486 (56%), Gaps = 22/486 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            L+W RNDLR+ DN AL AAC  +     KV AV++ TP+QW+ H ++  Q  FI   L 
Sbjct: 17  SLMWFRNDLRLGDNPALNAACEYAGVHGGKVRAVYLVTPKQWQHHHVAPMQIDFIRRHLE 76

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + +SL   GI         FDD+   L  Y  + ++  +F  ++ EINE RRD  L   
Sbjct: 77  LLARSLGALGIPLDVLYGQVFDDTAALLVDYVNEHQIGAIFAGKEPEINEQRRDNAL--- 133

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   +         LL PG++LN +  MYKV+TPF K   Q      +  +PVPA    G
Sbjct: 134 IASGLNLTLLQQDCLLAPGAVLNLSGDMYKVFTPFSKKWKQIAASMQILPVPVPAP--VG 191

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                  P  FD P ++ +  +  GE  A  IL +F  + V  Y   RD PA +GTS+LS
Sbjct: 192 SAITQIAPIVFDCPMRSSE-AWQAGEGAAKRILERFLNQNVAEYQVLRDFPAEEGTSRLS 250

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL++G++SP+QC   + + F + L+   S A +WLNEL+WREFYRHL+  +P + MG  
Sbjct: 251 PYLALGIISPKQCVAAILQRFPEALVDYTSPAKTWLNELMWREFYRHLLVAFPRLSMGHN 310

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    + I+W  D     AW +G TG+P++DAAMRQLN  GWMHNRLRM+ ASFL K LL
Sbjct: 311 FNALGDGIKWRNDKAEFNAWCEGRTGYPLVDAAMRQLNQTGWMHNRLRMLVASFLTKHLL 370

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF  QL+DGDLA+NNGGWQW+A TG D+ PYFR+F+P  Q  +FD    FI+
Sbjct: 371 IDWRWGEQYFRQQLIDGDLAANNGGWQWSAGTGCDAQPYFRVFSPLSQSAKFDSDCEFIK 430

Query: 427 HWLPELNNVPTQYIHAPH-------------SWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
            ++PEL+ V  + IH                +  +    S  YP PIV+H  A    +  
Sbjct: 431 RFVPELSEVSNKAIHEIKCSAAYEAAKVDLFAPPELEGKSATYPAPIVEHSFARKRAIEV 490

Query: 474 YYAAKK 479
             A KK
Sbjct: 491 LSALKK 496


>gi|313107322|ref|ZP_07793517.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016]
 gi|310880019|gb|EFQ38613.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016]
          Length = 476

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 191/470 (40%), Positives = 272/470 (57%), Gaps = 8/470 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +L ++
Sbjct: 1   MNLIWFRCDLRTTDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRNLGEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   I      C ++  + E +   C +  +  +  N++Y +NE RRD+ + +RL+
Sbjct: 59  QRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGIGAVHVNQEYGVNEERRDQAVGQRLR 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIRL 184
            + +   S  D +   PGS+L      ++V++ FRK   + L QA               
Sbjct: 119 EQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQPPHA 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                  +    F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ GTSQ
Sbjct: 179 LASDPLPDAVPAFPRPADSLRRLWPAGEKVAQERLRDFADQHLADYHERRDFPALPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF   TE + W +    L+AW+QG TG  IIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RPFREETEALRWRQAPAELEAWQQGRTGITIIDAAMRQLLATGWMHNRLRMVVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q +RFDP+G F
Sbjct: 359 LLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSERFDPRGEF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           IRHWLPEL  +  + IH P S        ++YP P+VD K +    L  +
Sbjct: 419 IRHWLPELAGLERKAIHDPSSLGLFA--GVDYPRPMVDLKASRERALAAF 466


>gi|254448088|ref|ZP_05061551.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
 gi|198262214|gb|EDY86496.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC5015]
          Length = 486

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 204/480 (42%), Positives = 284/480 (59%), Gaps = 12/480 (2%)

Query: 12  VWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           VW R+DLR  DN+AL  A   ++A    +IA +IATP+QW +H +SA Q  FI   L  +
Sbjct: 9   VWFRSDLRCHDNRALSRAAEQANAQNLPLIAFYIATPKQWLEHDVSALQVDFILRHLPIL 68

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L++  I F+   C +F    E L   C    + +LF NR+Y +NE++RD+ + + L+
Sbjct: 69  QTQLARYQIPFRVWVCDDFSQVPELLLEQCQNWNIQQLFANREYPVNEIQRDQRVARTLE 128

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +    FDD  LL PGS+       YKV+TPF+K   + L +AD+   P   I    P
Sbjct: 129 STSIETHFFDDFTLLAPGSVRTGQGDPYKVFTPFKKQCFKQLQEADIAEAPTARIEAEAP 188

Query: 188 --VTPSNIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                S      D       + ++ ++P GE  AL  L  F + ++++Y ++RD P  +G
Sbjct: 189 SHFAQSPPESLADFAPHLDTKTLEHLWPAGESAALERLETFAEHRLHHYQQRRDYPNAKG 248

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS +S YL+IG LSPR                   GA +W++EL+WR+FY+H++  +P V
Sbjct: 249 TSAISAYLAIGSLSPRAAMRAATRANQGEWTSGSEGAQTWISELLWRDFYQHILTAFPRV 308

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G+ F P TE I W  D    QAW +G TG PI+DAAMRQL   GWMHNRLRM+TA FL
Sbjct: 309 SRGRAFQPHTENIVWRDDPEAFQAWCEGRTGIPIVDAAMRQLLQTGWMHNRLRMVTAMFL 368

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+DWR GE+YF  QL+DG+L +NNGGWQWAASTG D+ PYFRIFNP  QG+RFD  
Sbjct: 369 SKNLLIDWRRGEQYFRRQLIDGELGANNGGWQWAASTGTDAAPYFRIFNPVTQGQRFDKD 428

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           G FIRH++PEL ++P +Y+H P +  D + L  +YP PIVD K +    +  +  A + S
Sbjct: 429 GAFIRHYVPELKDLPNKYLHEPWTHPDADQL--DYPQPIVDLKLSRQRAIEVFRQASEHS 486


>gi|269965348|ref|ZP_06179468.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
 gi|269829994|gb|EEZ84223.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
          Length = 471

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 209/477 (43%), Positives = 282/477 (59%), Gaps = 12/477 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  D+ AL AA  +S   V+A FIATPEQWR+H ++  Q+  I   L  +
Sbjct: 1   MILVWFRRDLRTLDHTALKAAL-DSGQPVVACFIATPEQWREHHMAPMQADLIARRLACL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L    I F Y +  +F D  + +  +      T +  N  YE+NE   D  + + L 
Sbjct: 60  NEELESLNIPFLYKEVPSFSDCTDVISGWAETLEATSVMANIHYEVNERELDTQVSEALA 119

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            H +  + F D  +  P ++LN   + +KV+TPF++A +       +      A      
Sbjct: 120 SHDIEFELFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLTQFHMPTVVKPHEQAPLNKKV 179

Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +      RF     F YP ++ +  +     + L  LR+F +E+   Y  +RD PAI GT
Sbjct: 180 LEQLESARFNSSFTFSYPRESSED-WLASTNDILKQLREFARERSDAYQSERDFPAIDGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P + 
Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENQQNDL--TEGKATWLSEIIWREFYQHLLVFEPKLV 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            GK FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL 
Sbjct: 297 KGKGFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G
Sbjct: 357 KDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDANG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            F+RHW+PE+ +VP +YIH P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 417 EFVRHWVPEIKSVPNKYIHKPWTWEGFSLLE--YHKPMVDHKTEREITLQLFKSAKE 471


>gi|323193139|gb|EFZ78358.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
          Length = 427

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 227/430 (52%), Positives = 300/430 (69%), Gaps = 4/430 (0%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           ++ RQ+ FI A L  +Q +L++KGI   +H+ ++F  SIE + + C Q  V+ LFYN QY
Sbjct: 1   MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQY 60

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
           E NE +RD  +EK L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L + 
Sbjct: 61  EFNERQRDAAVEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 119

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYV 231
               +P P IR++G ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y 
Sbjct: 120 IPPCVPAPKIRVSGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYE 179

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            +RD PA+ GTS+LS  L+ G LSPRQC +RL  E    L         WLNELIWREFY
Sbjct: 180 SRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFY 237

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RHLM +YP++C  +PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHN
Sbjct: 238 RHLMIWYPALCKHQPFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHN 297

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP
Sbjct: 298 RLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNP 357

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
           T QG+RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL
Sbjct: 358 TTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATL 417

Query: 472 NQYYAAKKQS 481
           + Y AA+K +
Sbjct: 418 SAYEAARKGA 427


>gi|260769655|ref|ZP_05878588.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
 gi|260614993|gb|EEX40179.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
          Length = 475

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 215/474 (45%), Positives = 283/474 (59%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL  A   SD  V A+F+ATP QW+QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWLRRDLRSVDNTALNEALA-SDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           Q  L+   +   Y + + F ++++ +          ++  NR YE+NE +RD    +RL 
Sbjct: 60  QTELAALNVPLLYREVATFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLH 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q  +  +SFDD  ++PPGS+ N     +KV+TPF++A +       +++           
Sbjct: 120 QQGIEWQSFDDKCVMPPGSLRNKQGDYFKVFTPFKRAWLTQFSPPRIQASRAAKPWSLPE 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              S +    + F +P  + D  +P+        LR FC+E++  Y +QRD PA  GTS 
Sbjct: 180 ALQSLLWCEAQPFTHPRVSSD-AWPVDFDTIRRRLRAFCQEQLDDYKQQRDFPAQDGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LSPRQC  R+  E    +     GA +WL+ELIWREFY+HL+ F P +   
Sbjct: 239 LSPYLAIGALSPRQCIARVYAE--SAMGALSDGAQTWLSELIWREFYQHLLTFEPKLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           K F+ W  ++ W  D      W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 KDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFM  L+DGD A+NNGGWQW ASTG D  PYFRIFNPT QG++FDPQG F
Sbjct: 357 LHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGEKFDPQGRF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL  VP  +IHAP +W   N L   YP PIVDHK     TL  Y  AK
Sbjct: 417 IRQWVPELATVPEAHIHAPSNWGGVNSLL--YPQPIVDHKAEREVTLRLYKEAK 468


>gi|312958863|ref|ZP_07773382.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6]
 gi|311286633|gb|EFQ65195.1| DNA photolyase, FAD-binding [Pseudomonas fluorescens WH6]
          Length = 480

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 186/473 (39%), Positives = 266/473 (56%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL+WLR DLR+ DN AL AA       V AV++ TPEQWR H  +  +  F   +L ++
Sbjct: 1   MHLIWLRTDLRLHDNTALAAASQRG--PVAAVYLITPEQWRAHDDAPCKVDFWLRNLQRL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +  I       + +      +   C +  V  +  N +Y I+E RRD  + ++L+
Sbjct: 59  SLALGELNIPLLIRSAATWQQVPAVVSELCRELSVKSVHVNEEYGIHENRRDAAVAQQLE 118

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V    + D +L  PGS+L      ++V++ FRK     L  A  R +  P  +    
Sbjct: 119 ACGVTFHRYLDQLLFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRIVATPKAQQKLA 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +P+    F+ P   +  ++P GE  A   L  F ++++ YY ++RD PA  GTSQ
Sbjct: 179 FNSDPVPQTVDGFEPPSDCLRALWPAGEDEARRRLDAFAEQQISYYKDERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +   +           G  +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSAYLAAGVVSPRQCLHAALQSNQGEFESGDIGTITWINELLWREFYKHILVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE + W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEAVAWRHAPKDLAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIF+P  Q ++FD  G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFSPLSQSEKFDSDGVF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+HWLPEL  +  + +H P +      ++ +YP  IVD KK+    L  + + 
Sbjct: 419 IKHWLPELAALNKKDVHNPEAVGGLFGMA-DYPRAIVDLKKSRERALAAFRSL 470


>gi|262278230|ref|ZP_06056015.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258581|gb|EEY77314.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           calcoaceticus RUH2202]
          Length = 480

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 190/477 (39%), Positives = 272/477 (57%), Gaps = 15/477 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ D+ AL+ AC    +  I + I +PEQW+ H  +  + +F    L Q++
Sbjct: 6   QLIWFRQDLRVRDHAALWHACQQGPS--IGLIILSPEQWKIHHDAPIKINFYLRQLQQLK 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K L Q  I         + D  +++     Q  +  ++ N +  +NE++RDK++++ L  
Sbjct: 64  KELEQLNIPLIIQVIPYWKDIADYISKLAQQLNIENVYSNIEVGVNELKRDKIVQQALNQ 123

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRLTGP 187
           +      F D  + P  SI N + Q Y+V++ F+KA    L +    +  P+P  +   P
Sbjct: 124 QSKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYSKLDISGLPQCYPIPEKQNAYP 183

Query: 188 VTPSNIPRFFDYPFQAI---------DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            + SNI        +A            ++P GE  AL  L  F  + + +Y  +RD P 
Sbjct: 184 QSFSNIKSLGLEDIEAFFDSSIPKEQQDLWPTGEDFALEQLDLFINDHLSHYKLERDFPN 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTSQLSPYL++G+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 VKGTSQLSPYLNLGILSIRQCLQALFRAEHGNFHLTNEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+ I+W  +   L AW+ G TG PIIDA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHYPFKKNTQNIKWENNQEHLVAWQNGQTGIPIIDAGMRQLQKTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWR+GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRVGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           DP G +IR W+ EL ++  + IH P+S   K  L LNYP PIVD K+     +  + 
Sbjct: 424 DPNGDYIRQWVNELAHLDNKMIHEPYS--TKTHLQLNYPKPIVDLKETRIKAIETFK 478


>gi|261213071|ref|ZP_05927355.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
 gi|260838136|gb|EEX64813.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
          Length = 469

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 214/474 (45%), Positives = 287/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA  + +  V+AV+IATP QW+QH ++  Q+ FI+  L ++
Sbjct: 1   MKLVWFRRDLRSFDNTALSAAIASGE-PVVAVYIATPAQWQQHHVAPIQADFIWRRLGEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  + E +     +   T++F NR YE++E +RD+  E  L 
Sbjct: 60  QQELAALNVPLLYQQVADFKAAAEAVSQLASKLNATQVFANRDYELDEQQRDRHTELLLD 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R I   +FDD  LLPPG +     + +KV+TPF++A +       +             
Sbjct: 120 ERGISWATFDDKCLLPPGCVRTKQGEHFKVFTPFKRAWLSLFQPPIITKNQPAEPWTLSS 179

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              S +      FDYP       +P+  +   + LR FC+++V  Y +QRD PA +GTS 
Sbjct: 180 EWASWVWNSAQTFDYPRVDSQS-WPVDFETIRNQLRDFCRDQVQNYHQQRDFPAREGTSV 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGALSARQCVARLYRE--SSMGALSEGAQVWLSELIWREFYQHLVAIEPNISKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F  W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFHEWGSRLEWWDDNEKFQRWCEGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDPQG F
Sbjct: 357 LHIDWRWGERYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPQGEF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IRHW+PEL ++   YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRHWVPELRSMSAAYIHQPWTYPAVNSVP--YPARLVDHKQEREVTLRLYKTAK 468


>gi|91223275|ref|ZP_01258541.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
 gi|91192088|gb|EAS78351.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
          Length = 471

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 209/477 (43%), Positives = 282/477 (59%), Gaps = 12/477 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  D+ AL AA  +S   V+A FIATPEQWR+H ++  Q+  I   L  +
Sbjct: 1   MILVWFRRDLRTLDHTALKAAL-DSGHPVVACFIATPEQWREHHMAPMQADLIARRLACL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L    I F Y +  +F D  + +  +      T +  N  YE+NE   D  + + L 
Sbjct: 60  NEELESLNIPFLYKEVPSFSDCTDVISGWAETLEATSVMANIHYEVNERELDTQVSEALA 119

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            H +  + F D  +  P ++LN   + +KV+TPF++A +       +      A      
Sbjct: 120 SHDIEFELFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLTQFHMPTVVKPHEQAPLNKKV 179

Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +      RF     F YP ++ +  +     + L  LR+F +E+   Y  +RD PAI GT
Sbjct: 180 LEQLESARFNSSFTFSYPRESSED-WLASTNDILKQLREFARERSDAYQSERDFPAIDGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P + 
Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENQQNDL--TEGKATWLSEIIWREFYQHLLVFEPKLV 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            GK FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL 
Sbjct: 297 KGKGFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G
Sbjct: 357 KDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDANG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            F+RHW+PE+ +VP +YIH P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 417 EFVRHWVPEIKSVPNKYIHKPWTWEGFSLLE--YHKPMVDHKTEREITLQLFKSAKE 471


>gi|126175256|ref|YP_001051405.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS155]
 gi|125998461|gb|ABN62536.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella baltica OS155]
          Length = 505

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 202/491 (41%), Positives = 285/491 (58%), Gaps = 15/491 (3%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQ 57
           M      +  L+W R DLR+ DN+AL AAC     +   + A++IATP QW++H ++  Q
Sbjct: 18  MSIKVQGNNALMWFRQDLRLADNQALTAACDWARANGVALKAIYIATPTQWQRHDVAPIQ 77

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI   +  + + L+  GI F+  Q   F D   ++  YC QQ ++++F   + EINE 
Sbjct: 78  LDFIERHINLLAQGLASLGITFELIQLDAFADVPAFIGHYCQQQGISRVFAGSEPEINEQ 137

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           +RD+     +Q  +     D+  LL PG++LN +  MYKV+TPF +   +   +  +  L
Sbjct: 138 QRDQA---CIQAGIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAIFLL 194

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           PVPA    GPV     P  F+   +    ++  GE  A  IL  F ++KV  Y + RD P
Sbjct: 195 PVPAP--LGPVLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFP 252

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           AI GTS +SPYL+IGV+SPRQC   L  +F ++++   S A +WLNEL WREFYRHL+  
Sbjct: 253 AIDGTSSISPYLAIGVISPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVA 312

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +     F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ 
Sbjct: 313 FPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVV 372

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++
Sbjct: 373 ASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEK 432

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACHHT 470
           FDP G+FIR +LPEL +   + +H P +    +       ++   YP  IV+H  A    
Sbjct: 433 FDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFEQPLFNIKTAYPSAIVEHSAARARA 492

Query: 471 LNQYYAAKKQS 481
           L      KK +
Sbjct: 493 LTVLGVLKKAA 503


>gi|146306105|ref|YP_001186570.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
           ymp]
 gi|145574306|gb|ABP83838.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
           ymp]
          Length = 477

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 198/469 (42%), Positives = 272/469 (57%), Gaps = 7/469 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R+DLRI DN AL  A   S    IA+++ TP QW++H  +  +  F   +L  + 
Sbjct: 3   QLMWFRSDLRIDDNTALSQAM--SRGSTIALYLVTPGQWQRHDDAPCKVDFWLRNLAHLS 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           ++L+   +     QC +++ +   +   C Q  V  +  N +Y INE  RD+ +   L Q
Sbjct: 61  RALAALNVPLLIRQCEDWNQAPAVIAEVCHQHNVCAVHANEEYGINENLRDRCVAAYLAQ 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   S  D +L  PGSIL  +   ++VY+ FRK   ++L  A    +  P  +   P+
Sbjct: 121 QDIAWHSHLDQLLFKPGSILTRSGGYFQVYSQFRKVCYEHLHMALPGLVARPVAQAPTPL 180

Query: 189 TPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               IP   D    P + +  ++P GE+ A   L +F  E++ YY ++RD PA+ GTSQL
Sbjct: 181 ASDAIPHAVDGFAMPSEQLRSLWPAGEEAARQRLERFADEQIGYYKDERDFPALPGTSQL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ GVLSPRQC +              +G  +W+NEL+WREFY+H++  YP V   +
Sbjct: 241 SPYLAAGVLSPRQCLHAALAANRGEFDSGNAGVVTWVNELLWREFYKHILVGYPRVSRHR 300

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P TE + W +    L AW+QG TG PIIDAAMRQL   GWMHNRLRMI A FL K+L
Sbjct: 301 AFRPETEAVAWRRAPEELAAWQQGRTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTKNL 360

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP  Q ++FD +G FI
Sbjct: 361 LIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPISQSQKFDSEGRFI 420

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           RHWLPEL  +  + IH P S L        YP PIVD  ++    L  +
Sbjct: 421 RHWLPELAGLNKRDIHDPAS-LGGLFAPAGYPRPIVDLSRSRERALAAF 468


>gi|152989300|ref|YP_001350641.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
 gi|150964458|gb|ABR86483.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
          Length = 477

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 194/474 (40%), Positives = 271/474 (57%), Gaps = 9/474 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVW R DLR +DN AL AA        +A+++ +P QWR+H  +  +  F   +L ++
Sbjct: 1   MNLVWFRCDLRTSDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRNLSEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   I      C ++  +   L   C +  +  +  N++Y  NE RRD+ + + L+
Sbjct: 59  QRQLAALNIPLLVRDCEHWRQAPTVLGRLCSELGIGAVHVNQEYGANEQRRDQAVARHLR 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIR 183
            + +      D +   PGS+L      ++V++ FR+   + L QA      R  P P  R
Sbjct: 119 EQGVAFHEHLDQLFFAPGSVLTRGGGYFQVFSQFRRVCHERLYQALPAVQPRPQPQPPHR 178

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           L       +    F  P   +  ++P GE  A   LR F ++ +  Y EQRD PA+ GTS
Sbjct: 179 LLPGDPLPDAVPGFAAPGAGLRALWPAGETAAQQRLRDFAEQHLDDYHEQRDFPALPGTS 238

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP V  
Sbjct: 239 QLSPYLAAGVLSPRQCLDAALVANRGEFSGGRQGAATWINELLWREFYKHILVGYPRVSR 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF   TE + W +    L+AW+QG TG PIIDAAMRQL   GWMHNRLRM+ A FL K
Sbjct: 299 HRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMRQLLATGWMHNRLRMVVAMFLSK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q KRFDP+G 
Sbjct: 359 NLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRLFNPLSQSKRFDPRGE 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FIRHWLPEL  +  + IH P          ++YP  +VD K +    L  +   
Sbjct: 419 FIRHWLPELAGLERKAIHDPSRLGLFA--GVDYPQSMVDLKASRERALAAFRDL 470


>gi|153001581|ref|YP_001367262.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185]
 gi|151366199|gb|ABS09199.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS185]
          Length = 500

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 203/491 (41%), Positives = 285/491 (58%), Gaps = 15/491 (3%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQ 57
           M+     +  L+W R DLR+ DN+AL AAC     +   + A++IATP QW++H ++  Q
Sbjct: 13  MRIEVQGNNALMWFRQDLRLADNQALTAACDWARANGVALKAIYIATPTQWQRHDVAPIQ 72

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI   +  + + L+  GI F+  Q   F D   ++  YC QQ + ++F   + EINE 
Sbjct: 73  LDFIERHINLLAQGLASLGIAFELIQLDTFADVPAFISDYCHQQGIDRVFAGSEPEINEQ 132

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           +RD+     +Q  +     D+  LL PG++LN +  MYKV+TPF +   +   +  +  L
Sbjct: 133 QRDQA---CIQAGIPLVLTDEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPL 189

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           PVPA    GPV     P FF++  +    ++  GE  A  IL  F ++KV  Y + RD P
Sbjct: 190 PVPAP--LGPVLTEPKPHFFNHVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFP 247

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           AI GTS +SPYL+IGV+SPRQC   L   F ++++   S A +WLNEL WREFYRHL+  
Sbjct: 248 AIDGTSSISPYLAIGVISPRQCVAALLHHFPEVIVDDTSPARTWLNELTWREFYRHLLVA 307

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +     F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ 
Sbjct: 308 FPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVV 367

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++
Sbjct: 368 ASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEK 427

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-------DLSLNYPLPIVDHKKACHHT 470
           FDP G+FIR +LPEL +   + +H P +    +       +    YP  IV+H  A    
Sbjct: 428 FDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFEQPLFNTKTAYPSAIVEHSAARARA 487

Query: 471 LNQYYAAKKQS 481
           L      KK +
Sbjct: 488 LTVLGVLKKAT 498


>gi|262403201|ref|ZP_06079761.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
 gi|262350700|gb|EEY99833.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
          Length = 469

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 212/473 (44%), Positives = 293/473 (61%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL AA  + D  V+AV++ATP+QW+QH ++  Q+ FI+  L  +
Sbjct: 1   MRLVWLRRDLRCVDNSALSAAIASGD-PVVAVYLATPKQWQQHHLAPIQADFIWRRLGAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           Q+ L++  +   Y Q ++F D+ E +       +  ++F NR YE++E +RD   E+RL 
Sbjct: 60  QQELAKLNVPLLYRQVADFHDAAEVICQLAKTLKAKQVFANRDYELDEQQRDLRTEQRLA 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTG 186
           + ++   +FDD  +LPPGS+     + +KV+TPF++A +       + ++ P     +  
Sbjct: 120 EQQIAWWAFDDKCILPPGSVRTQQGEFFKVFTPFKRAWLSLFQPPTIVKNSPALKGIIPS 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +T         + ++ +D   +P+  +   + LR FC+E+V  Y + RD PA  GTS L
Sbjct: 180 ELTDWIWNSEQAFDYERVDSSQWPVEFETIRNQLRDFCRERVQDYHQWRDFPARTGTSSL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IG LS RQC  RL  E    ++    GA  WL+ELIWREFY+HL+A  P++   +
Sbjct: 240 SPYLAIGALSARQCVARLYRESAMGVLG--EGAQVWLSELIWREFYQHLVAREPNLSKSR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F  W   +EW  D    Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFHEWGSHLEWWNDHEKFQRWCEGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMSQL+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G FI
Sbjct: 358 HIDWRWGERYFMSQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL  + + YIH P ++   N +   YP P+VDHK+    TL  Y  AK
Sbjct: 418 RRWVPELRGLSSAYIHQPWTYPAVNSVL--YPAPLVDHKQEREVTLRLYKTAK 468


>gi|193077986|gb|ABO12900.2| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
           [Acinetobacter baumannii ATCC 17978]
          Length = 480

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 195/477 (40%), Positives = 274/477 (57%), Gaps = 15/477 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  +Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKIGFYLRQLRTLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K L+   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L +
Sbjct: 64  KELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187
           H      F D  + P  SI N + Q Y+V++ F+KA    L  + L    PVP  +   P
Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNEVP 183

Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   +    I + F          ++P+GEQ AL  L +F +E V +Y  +RD P 
Sbjct: 184 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKVERDFPN 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 IQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPITQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           DP+G +IR W+ EL ++  + IH P+S   K DL LNYP PIVD K+     +  + 
Sbjct: 424 DPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKETRLKAIETFK 478


>gi|213428164|ref|ZP_03360914.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 427

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 225/430 (52%), Positives = 298/430 (69%), Gaps = 4/430 (0%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           ++ RQ+ FI A L  +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QY
Sbjct: 1   MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQY 60

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
           E NE +RD  +EK L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L + 
Sbjct: 61  EFNERQRDAAVEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKED 119

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYV 231
               +P P IR++G ++    P   +YP QA D  +FP+ E   +  LR FC +    Y 
Sbjct: 120 IPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYA 179

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            +RD PA+ GTS+LS  L+ G LSPRQC +RL  E    L         WLNELIWREFY
Sbjct: 180 SRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFY 237

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RHLM +YP++C  +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHN
Sbjct: 238 RHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHN 297

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNP
Sbjct: 298 RLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNP 357

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
           T Q +RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL
Sbjct: 358 TTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATL 417

Query: 472 NQYYAAKKQS 481
           + Y AA+K +
Sbjct: 418 SAYEAARKGA 427


>gi|94501522|ref|ZP_01308040.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
 gi|94426340|gb|EAT11330.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
          Length = 478

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 208/471 (44%), Positives = 275/471 (58%), Gaps = 10/471 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S + VW R DLR+ DN AL+ A  N     IA +    +QW +H +S RQ   I   L  
Sbjct: 3   SFNAVWFRRDLRVHDNPALFHAMKNGQ--CIAFYCLAQKQWDEHQVSLRQRSLIRQQLED 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL+  G+       ++F    +   S   Q  V +LF N +YE+NEV   K + + L
Sbjct: 61  LTQSLAALGVPLIVIDTADFKSIPKTFVSVLQQYNVEQLFCNAEYEVNEVALTKNVTEAL 120

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           Q + + C  + D  L+ PG I+N   Q YKV+T F+KA +  L        P+P  +   
Sbjct: 121 QQQDIKCHEYHDQCLIQPGVIVNKQDQPYKVFTAFKKAYLAQLDIYMRDLYPLPK-KQQA 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P   ++I          IDP +   EQ AL  L +FCK+++  Y   RDIP++ GTS LS
Sbjct: 180 PKVKTDISALQSIAQVDIDP-WQGSEQVALDALDEFCKDRIKAYKRDRDIPSLDGTSTLS 238

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+IG LS RQCW   ++           G  +W +ELIWR+FYRHL+ F+P VC  K 
Sbjct: 239 PYLAIGSLSVRQCWQMSQQVSPS--GSKPEGIATWQSELIWRDFYRHLIYFFPHVCQYKA 296

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F   T+ + W KD  L QAW  G TG+P++DAAMRQLN  GWMHNRLRM+ A FL K L 
Sbjct: 297 FKQETDHLPWKKDQALFQAWCDGRTGYPLVDAAMRQLNQTGWMHNRLRMVAAMFLSKHLF 356

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE YFM QL+DGDLASNNGGWQW+ASTG D+VPYFRIFNP  Q +RFD +GTF+R
Sbjct: 357 IDWRLGEAYFMQQLIDGDLASNNGGWQWSASTGVDAVPYFRIFNPIRQSERFDSKGTFLR 416

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            ++PEL ++  + IH P     K    L YP PIVDHK+A   T   +   
Sbjct: 417 QYVPELASLDDKRIHNPDPITVK---KLGYPAPIVDHKQAVVQTKQWFKEL 464


>gi|269139942|ref|YP_003296643.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda EIB202]
 gi|267985603|gb|ACY85432.1| deoxyribodipyrimidine photo-lyase [Edwardsiella tarda EIB202]
 gi|304559777|gb|ADM42441.1| Deoxyribodipyrimidine photolyase [Edwardsiella tarda FL6-60]
          Length = 471

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 242/468 (51%), Positives = 316/468 (67%), Gaps = 5/468 (1%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +WLR+DLR+TDN+AL+AAC ++ A+V+A+++ATP QW    ++ RQ+ FI+ +L  +Q++
Sbjct: 1   MWLRSDLRMTDNRALHAACADARARVVALYVATPRQWLAQEMAPRQAQFIWQNLSALQEA 60

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L Q+ I        ++      +   CL++R   LF NRQYE+NE RRD  L   L    
Sbjct: 61  LGQRQIPLYCLSVDDYAAQARTVREVCLRERADALFANRQYELNERRRDDALAAALP--F 118

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
            C  FDD++LL PG++L  A  M+KV+TPF++A ++ L  ADLR LP P+ R      P+
Sbjct: 119 PCHFFDDALLLAPGAVLTGAGAMFKVFTPFKRAFLRGLASADLRVLPAPSPRQPIAAAPT 178

Query: 192 NIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
            + R  DYP  A+D  +FP GE  A   L +FC   +  Y  +RD PA  GTSQLSPYL+
Sbjct: 179 PVARV-DYPDAAVDSALFPAGETAAQVRLAQFCHGALATYAARRDFPAQAGTSQLSPYLT 237

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           +GVLSPRQ      +        P SGA +WLNELIWREFYRHL+  +P +C  +PFIPW
Sbjct: 238 LGVLSPRQ-CLAALQAQALASPSPSSGAEAWLNELIWREFYRHLLVAWPDLCRHRPFIPW 296

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T +I W  D   LQ W+QG TGFP++DAAMRQLN  GWMHNRLRM+TASFLVKDLL+DWR
Sbjct: 297 TARIRWRDDPAGLQRWQQGMTGFPLVDAAMRQLNRCGWMHNRLRMLTASFLVKDLLIDWR 356

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           +GE YF+ QL+DGDLA+NNGGWQWAASTG+D+ PYFRIFNP +QG+R+DPQG FIR WLP
Sbjct: 357 LGERYFLRQLIDGDLAANNGGWQWAASTGSDAAPYFRIFNPRVQGQRYDPQGQFIRRWLP 416

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           EL  VP   IH P  W  +    L+YP P+VDH +A   TL  +  A+
Sbjct: 417 ELREVPDSDIHHPQRWALRQRRVLDYPDPLVDHARARQDTLLAFARAR 464


>gi|28901326|ref|NP_800981.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362883|ref|ZP_05775752.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030]
 gi|260880171|ref|ZP_05892526.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034]
 gi|260895288|ref|ZP_05903784.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus
           Peru-466]
 gi|28809873|dbj|BAC62814.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085662|gb|EFO35357.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus
           Peru-466]
 gi|308091875|gb|EFO41570.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034]
 gi|308112450|gb|EFO49990.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030]
          Length = 471

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 207/476 (43%), Positives = 284/476 (59%), Gaps = 10/476 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  D+ AL AA       V+A FIATPEQW++H ++  Q+  I   L  V
Sbjct: 1   MILVWFRRDLRTLDHTALKAALDTGQ-PVVACFIATPEQWQEHHMAPMQADLIARRLEHV 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++  I   Y +   FDD  + +  +  +   T    N  YE+NEV  D+ + + L 
Sbjct: 60  HQELTELNIPLLYKEVPRFDDCTQVICDWADKLNATAAMVNINYEVNEVELDRKVSQALD 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL----VQADLRSLPVPAIR 183
           +R +   +F D  +  P ++LN   + +KV+TPF++A +Q      V    R   +P+ +
Sbjct: 120 NRGVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFSLPTVSKPQRQNELPSAQ 179

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           L           F     +     + +   + L  LR F +E+   Y  +RD PAI GTS
Sbjct: 180 LAAVKQDGFDADFTFSYPRESSEAWCVSTNDILKQLRTFARERSDGYQMKRDFPAIDGTS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P +  
Sbjct: 240 QLSPYLAIGALSPRQCIARLYAENPQPDL--SEGKATWLSEIIWREFYQHLLVFEPKLVK 297

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G+ FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 298 GRGFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 357

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G 
Sbjct: 358 DLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGQ 417

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           F+RHW+PE+ +VP +++H P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 418 FVRHWVPEIKSVPNKFVHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471


>gi|192360182|ref|YP_001982413.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107]
 gi|190686347|gb|ACE84025.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107]
          Length = 476

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 192/475 (40%), Positives = 280/475 (58%), Gaps = 10/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW RNDLR+ DN ALY A       V+AV++       +  I+  +  FI   LL +
Sbjct: 2   TALVWFRNDLRVRDNPALYKAAEEKQG-VLAVYVHCEAYVGRFPIAPARLDFIRRHLLVL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L+Q  I  +    +  +     L +   Q  + K F+N +Y ++E+ RD  + + L+
Sbjct: 61  VRELAQLNIPLRLIAVNRAEQIAPALAALVTQYNIDKCFFNAEYPLDELARDHQVNQLLR 120

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186
            + +  K   D V++PPG I     + YKV+T F++  +Q ++   L+ L +P  +    
Sbjct: 121 AQGVLVKRCHDRVIVPPGMIRTGNGEPYKVFTAFKRKWLQTVMPLHLQPLGLPDKQAQPM 180

Query: 187 ---PVTPSNIPRFF-DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              PVT ++I R F ++  + ++ ++P GE  A   L  F +  + +Y ++RD PA+QGT
Sbjct: 181 PVKPVTQADINRLFGEHSVRDLEHLWPAGEDEACARLDSFIESGLTHYQDKRDFPALQGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL+IG LSPRQ  + +   +     +  +GA  W++ELIWREFY+H++  +P VC
Sbjct: 241 STLSPYLAIGSLSPRQAISSVL-CYTQGDWESNAGASCWISELIWREFYQHVVVDFPQVC 299

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +     TE   W KD      W QG TG P++DAAMRQL   GWMHNRLRM+ A FL 
Sbjct: 300 KHRAMQVHTEAFPWKKDKKQFSRWCQGNTGIPLVDAAMRQLVMTGWMHNRLRMVVAMFLT 359

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+L +DWR+GE +FM  L+DGD A+NNGGWQW+ASTG D+ PYFR+FNP  Q +RFDPQG
Sbjct: 360 KNLQIDWRLGERFFMEHLIDGDFAANNGGWQWSASTGTDAAPYFRVFNPISQSERFDPQG 419

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            FIR W+PEL +VP +YIH P +  DK+  SL YP P+VD  ++   T+  +   
Sbjct: 420 DFIRSWIPELADVPLKYIHNPSA--DKSFSSLQYPAPMVDLAESRKSTIALFSQL 472


>gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
           35110]
 gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
           35110]
          Length = 477

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 184/483 (38%), Positives = 253/483 (52%), Gaps = 19/483 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASL 65
           M+  +VW R DLRI D+ AL  A   +D ++I +FI   +   R+   S     F+  SL
Sbjct: 1   MNRIIVWHRRDLRIFDHSALAEAAKFAD-EIIPIFILDDDILLRREDFSPACVGFMLESL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  S +  G      +       +E L S   + R   +++N  YE     RD+ ++ 
Sbjct: 60  EALALSYANIGGKLIVRRG----QVLEVLKSLVGETRAQAIYFNEDYEPFAKMRDQAVQS 115

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             +   V  K+F D V   P  +L    Q Y V+TP++K  +  L        P      
Sbjct: 116 EFEKLGVRVKAFTDQVCFHPQRVLKDNGQPYTVFTPYQKKWLA-LSGNIPTPQPALTRIS 174

Query: 185 TGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           T  +    +P+  D   + ++ P+   GE   L  LR F  + +Y+Y E RD PA   TS
Sbjct: 175 TPELPSIPLPKTSDIRKKFSVQPIVQGGEPKGLKRLRAFLSQNIYHYKELRDFPATNATS 234

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS  L  G LS R  ++             + G  ++++ELIWREFY  ++  +P V  
Sbjct: 235 LLSADLRFGTLSIRHVFHESMRLVPQASEPAREGIQTFISELIWREFYFQILDHFPHVEK 294

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F P  E ++W  +    +AWK G TG+PI+DAAMR L   GWMHNRLRMI ASFL K
Sbjct: 295 H-SFKPEFENLKWENNEVFFEAWKNGQTGYPIVDAAMRALRQTGWMHNRLRMIVASFLTK 353

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YFM  L+DGDLA+NNGGWQW+ASTG D+ PYFRIFNP +Q ++FDP+G 
Sbjct: 354 DLLIDWRWGELYFMQHLIDGDLAANNGGWQWSASTGTDAQPYFRIFNPVLQSQKFDPKGE 413

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN---------DLSLNYPLPIVDHKKACHHTLNQY 474
           FIR ++PEL  VP +YIH P   L K+          L  +YP PIV+HK      L  Y
Sbjct: 414 FIRKYVPELQAVPVRYIHFPAEILRKSPLLAREIGVALGKDYPHPIVEHKVQREKALRLY 473

Query: 475 YAA 477
            A 
Sbjct: 474 KAM 476


>gi|260549666|ref|ZP_05823883.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp.
           RUH2624]
 gi|260407183|gb|EEX00659.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter sp.
           RUH2624]
          Length = 480

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/479 (39%), Positives = 275/479 (57%), Gaps = 15/479 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ AC    +  I + I +PEQW+QH  +  +  F    L ++Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHACQQGPS--IGLVILSPEQWKQHDDAPIKISFYLRQLKELQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K L+   I         ++D+ +++  +  +  +  ++ N +   NE++RDK ++  L +
Sbjct: 64  KELASLHIPLVIQVIPYWEDTAKFISDFSKKYNIENVYANIEMGANELKRDKTVQDSLNK 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLPVPAIRLT 185
                  F D  + P  SI N + Q Y+V++ F+KA    L  + L     LP     ++
Sbjct: 124 ESKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYAKLNTSGLPQCFPLPHKQNEIS 183

Query: 186 GPVTPSNIPRFFDYP-------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                       +          +    ++P+GE  AL  L +F ++ V +Y  +RD P 
Sbjct: 184 LEFLDEKSVDLAEIEKLFCSSISKEQQDLWPVGESYALEQLDQFVEDSVSHYKVERDFPH 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS+LSPYL+IG+LS RQC   L             G  +WL+ELIWREFY+H++  +
Sbjct: 244 VHGTSKLSPYLNIGILSVRQCLQALFRNQHGNFHLDNEGQQTWLDELIWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+WN +   L+AW+ G TG PI+DA MRQL   GWMHNR+RMITA
Sbjct: 304 PYVSKHLPFKKDTQKIKWNHNPEHLKAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q ++F
Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPISQSQKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           DP G +IR W+ EL ++  + IH P+S  +K +LSLNYP PIVD K+     +  +   
Sbjct: 424 DPNGDYIRKWVKELAHLDNKSIHDPYS--NKINLSLNYPKPIVDLKETRLKAIETFKHI 480


>gi|217972489|ref|YP_002357240.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223]
 gi|217497624|gb|ACK45817.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223]
          Length = 499

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 200/490 (40%), Positives = 285/490 (58%), Gaps = 14/490 (2%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQ 57
           M+     +  L+W R DLR+ DN+AL AAC     +   + A++IATP QW++H ++  Q
Sbjct: 13  MRIEVQGNNALMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQ 72

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI   +  + + L+  GI+F+  Q   F D   ++  YC QQ ++++F   + EINE 
Sbjct: 73  LDFIERHINLLAQGLASLGIIFELIQLDTFADVPAFISDYCQQQGISRVFAGSEPEINEQ 132

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           +RD+     +Q  +     ++  LL PG++LN +  MYKV+TPF +   +   +  +  L
Sbjct: 133 QRDQA---CIQVGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPL 189

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           PVPA    GPV     P  F+   +    ++  GE  A  IL  F ++KV  Y + RD P
Sbjct: 190 PVPAP--LGPVLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFP 247

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           +I GTS +SPYL+IGV+SPRQC   L  +F ++++   S A +WLNEL WREFYRHL+  
Sbjct: 248 SIDGTSSISPYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVA 307

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +     F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ 
Sbjct: 308 FPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVV 367

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++
Sbjct: 368 ASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEK 427

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTL 471
           FDP G+FIR +LPEL +   + +H P +    +           YP  IV+H  A    L
Sbjct: 428 FDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARSRAL 487

Query: 472 NQYYAAKKQS 481
                 KK +
Sbjct: 488 TVLGVLKKAA 497


>gi|260556618|ref|ZP_05828836.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           baumannii ATCC 19606]
 gi|260409877|gb|EEX03177.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           baumannii ATCC 19606]
          Length = 480

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 196/477 (41%), Positives = 274/477 (57%), Gaps = 15/477 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  +Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKIGFYLRQLRTLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K L+   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L +
Sbjct: 64  KELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187
           H      F D  + P  SI N + Q Y+V++ F+KA    L  + L    PVP  +   P
Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNEVP 183

Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   +    I + F          ++P+GEQ AL  L +F +E V +Y  +RD P 
Sbjct: 184 LDFLQGKNIDLDEIEKLFCPSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKLERDFPH 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           IQGTS+LSPYL+IG+LS RQC   L             G   WL+EL+WREFY+H++  +
Sbjct: 244 IQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQIWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRIRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           DP+G +IR W+ EL ++  + IH P+S   K DL LNYP PIVD K+     +  + 
Sbjct: 424 DPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKETRLKAIETFK 478


>gi|304410099|ref|ZP_07391718.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183]
 gi|307302189|ref|ZP_07581947.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175]
 gi|304351508|gb|EFM15907.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS183]
 gi|306914227|gb|EFN44648.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica BA175]
          Length = 503

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 201/490 (41%), Positives = 282/490 (57%), Gaps = 14/490 (2%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQ 57
           M      +  L+W R DLR+ DN+AL AAC     +   + A++IATP QW++H ++  Q
Sbjct: 18  MSIEVQGNNALMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQ 77

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI   +  + + L+  GI F+  Q   F D   ++  YC QQ ++++F   + EINE 
Sbjct: 78  LDFIERHINLLAQGLASLGITFELIQLDTFADVPAFISDYCQQQGISRVFAGSEPEINEQ 137

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           +RD+     +Q  +     ++  LL PG++LN +  MYKV+TPF +   +   +  +  L
Sbjct: 138 QRDQA---CIQAGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPL 194

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           PVPA    GPV     P  F+   +    ++  GE  A  IL  F ++KV  Y + RD P
Sbjct: 195 PVPAP--LGPVLTEPKPHLFNNVIKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFP 252

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           AI GTS +SPYL+IGV+SPRQC   L  +F ++++   S A +WLNEL WREFYRHL+  
Sbjct: 253 AIDGTSSISPYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVA 312

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +     F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ 
Sbjct: 313 FPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVV 372

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++
Sbjct: 373 ASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEK 432

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHA------PHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
           FDP G+FIR +LPEL +   + +H       P  +         YP  IV+H  A    L
Sbjct: 433 FDPDGSFIRKYLPELASWGIKQLHQSSTAQTPSLFDQPLFTKTAYPSAIVEHSAARARAL 492

Query: 472 NQYYAAKKQS 481
                 KK +
Sbjct: 493 TVLGVLKKAA 502


>gi|327480577|gb|AEA83887.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri DSM 4166]
          Length = 476

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 197/470 (41%), Positives = 279/470 (59%), Gaps = 7/470 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+WLR+DLR +DN AL +A        +AV++ TP QW  H  +A +  F   +L+++
Sbjct: 2   TQLIWLRSDLRTSDNTALASAMAAG--PTVAVYLITPGQWLAHDDAACKVDFWLRNLVEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L    +        ++  + + L   C +  V +L YN +Y +NE RRD+ +  RL+
Sbjct: 60  AGRLQALNVPLLIRDAEDWQAAPDALLKLCQELAVQRLHYNDEYGVNEQRRDQAVAARLR 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I  + + D +L  PGS+L  +   +KV+  FR+A +  L  +    +  PA +    
Sbjct: 120 AAGIDVRGYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPACVAPPAPQQPMT 179

Query: 188 VT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           VT   P +  R FD P   +  ++P GE  A H L  F ++ ++ Y ++RD+PA  GTSQ
Sbjct: 180 VTSDVPPDEVRGFDRPSDYLRTLWPAGETFAQHRLAAFIEDDLHQYHQRRDLPAEPGTSQ 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+S RQC +         L    +GA +W+NEL+WREFY+H++  YP V M 
Sbjct: 240 LSAYLAAGVISIRQCLHAAVASNRGELDSGSAGATTWINELLWREFYKHILVGYPRVSMH 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W + +  LQAW++G TGFPIIDAAMRQL   GWMHNRLRM+TA FL K+
Sbjct: 300 RAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRMVTAMFLSKN 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DSVPYFR+FNP  Q +RFDP G F
Sbjct: 360 LLIDWREGERWFMRNLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQRFDPDGQF 419

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +R WLPEL  +  + IH P S         +YP PI+D  ++    L+ +
Sbjct: 420 LRRWLPELQGLGKREIHNP-SAQRSLFGKADYPAPIIDLGESRARALDAF 468


>gi|213581260|ref|ZP_03363086.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 426

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 225/428 (52%), Positives = 296/428 (69%), Gaps = 4/428 (0%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
            RQ+ FI A L  +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE 
Sbjct: 2   PRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEF 61

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           NE +RD  +EK L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +   
Sbjct: 62  NERQRDAAVEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIP 120

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQ 233
             +P P IR++G ++    P   +YP QA D  +FP+ E   +  LR FC +    Y  +
Sbjct: 121 PCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASR 180

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA+ GTS+LS  L+ G LSPRQC +RL  E    L         WLNELIWREFYRH
Sbjct: 181 RDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRH 238

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           LM +YP++C  +PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  GWMHNRL
Sbjct: 239 LMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRL 298

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT 
Sbjct: 299 RMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTT 358

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q +RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PIV+HK+A   TL+ 
Sbjct: 359 QRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPIVEHKQARIATLSA 418

Query: 474 YYAAKKQS 481
           Y AA+K +
Sbjct: 419 YEAARKGA 426


>gi|170723611|ref|YP_001751299.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida W619]
 gi|169761614|gb|ACA74930.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas putida W619]
          Length = 480

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 194/476 (40%), Positives = 275/476 (57%), Gaps = 7/476 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL AAC       +A+++A+P QW+ H  +A +  F   +L  +
Sbjct: 1   MQLIWLRSDLRVNDNTALSAACERG--PAVALWLASPGQWQAHDDAACKVDFWLRNLRDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL    I     +   +D + + L   C Q ++  + +N +Y INE  RD+     L+
Sbjct: 59  RQSLEGLNIPLLVRRIDTWDQAAQTLLDVCRQHKIEAVHWNDEYGINENSRDQATRALLE 118

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   ++ D +L  PGS+L  +   ++V++ F+K  +++L ++     P    +    
Sbjct: 119 ASGVQAHNYLDQLLFRPGSVLTRSGDYFQVFSQFKKVCLEHLHRSLPSQAPRVKRQAPVG 178

Query: 188 VTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP+    FD P +A+   +P GE  A   L +F  E +  Y   RD+PA  GTSQ
Sbjct: 179 IASDPIPQHIEGFDKPSRALSEHWPAGEDEAQARLSRFVDETIEDYHHLRDLPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +              +G  +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNRGEFDSGSTGTQTWINELLWREFYKHILTGYPQVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W      L+AW+QG TGFPIIDAAMRQL   GWMHNRLRMI A FL K+
Sbjct: 299 RAFRTHTELLPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDPQG F
Sbjct: 359 LLIDWRLGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGHF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IRHW+PEL  +  + IH P    D      +Y  PIVD   +    L  +    + 
Sbjct: 419 IRHWVPELRGLDEKSIHQPTQNKD-LFADNSYHRPIVDLSSSRQRALEAFKGLSRS 473


>gi|70732464|ref|YP_262226.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Pf-5]
 gi|68346763|gb|AAY94369.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Pf-5]
          Length = 481

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 192/473 (40%), Positives = 273/473 (57%), Gaps = 7/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN AL A         +AV++ +PEQW  H  +  +  F   +L  +
Sbjct: 1   MQLIWLRSDLRLHDNTALSA--AAQRGAAVAVYLLSPEQWLAHDDAPCKIDFWLRNLQSL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +  I       + ++ + + L   C Q +V  L +N++Y I+E RRD  + + LQ
Sbjct: 59  STALGRLNIPLLIRSAATWEQAPQVLLELCRQLQVQMLHFNQEYGIHESRRDAAVTRALQ 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           H  I  +   D +L  PGS+L  +   ++V++ FRK     L  A    +  P  +L   
Sbjct: 119 HAGISVQGHLDQLLFQPGSVLTKSGGYFQVFSQFRKVCYSRLHTALPALVKAPGAQLPLS 178

Query: 188 VTPSNIPR---FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P+    F  P QA+  ++P G+  A   L KF  E+++YY  +RD PA  GTSQ
Sbjct: 179 INADPLPQRVEGFPSPTQALRELWPAGDDEAQRRLEKFSDEQIHYYQSERDFPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GV+SPRQC +               GA +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSPYLAAGVISPRQCLHAALRGNQGEFESGSPGAVTWINELLWREFYKHILVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEAVKWRHAPEELAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW++STG DS PYFRIFNP  Q ++FD +G F
Sbjct: 359 LLIDWREGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPISQSQKFDSEGRF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+HWLP+L  +  + IH P +      +   YP PIVD  ++    L  + A 
Sbjct: 419 IKHWLPQLAGLNKKDIHNPAAMGGLFGVP-GYPAPIVDLSRSRERALAAFKAL 470


>gi|260901113|ref|ZP_05909508.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037]
 gi|308109383|gb|EFO46923.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037]
          Length = 471

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 206/477 (43%), Positives = 281/477 (58%), Gaps = 12/477 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  D+ AL AA       V+A F+ATPEQW++H ++  Q+  I   L  V
Sbjct: 1   MILVWFRRDLRTLDHTALKAALDTGQ-PVVACFVATPEQWQEHHMAPMQADLIARRLQHV 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++  I     +   FDD  + +  +  +   T    N  YE+NEV  D+ + + L 
Sbjct: 60  HQELTELNIPLLCKEVPRFDDCTKVICDWADKLNATAAMVNINYEVNEVELDRKVSQALD 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +R +   +F D  +L P ++LN   + +KV+TPF++A +Q        S P     L   
Sbjct: 120 NRGVEFHAFHDKCVLAPTTVLNKQGEYFKVFTPFKRAWLQKFS-LPTVSKPQRQNELPSE 178

Query: 188 VTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              +     FD  +     +     +     + L  LR F +E+   Y  +RD PAI GT
Sbjct: 179 QLEAVKQDGFDADYTFSYPRESSEAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P + 
Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENPQPDL--SEGKATWLSEIIWREFYQHLLVFEPKLV 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G+ FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL 
Sbjct: 297 KGRGFIDWEDKIQWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G
Sbjct: 357 KDLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            F+RHW+PE+  VP +++H P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 417 QFVRHWVPEIKRVPNKFVHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471


>gi|127512408|ref|YP_001093605.1| deoxyribodipyrimidine photo-lyase [Shewanella loihica PV-4]
 gi|126637703|gb|ABO23346.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella loihica PV-4]
          Length = 478

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 205/480 (42%), Positives = 279/480 (58%), Gaps = 20/480 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+WLR D R+ DN AL  A      +  A+FIATP QW+QH ++  ++  I   L  + 
Sbjct: 3   ALLWLRRDFRLHDNPALSEAVRLRVKQ--ALFIATPAQWQQHDMAPIKADLIRRHLELMA 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L++ GI       ++F D +  L  YC    V  L  N + E++E  RDK +      
Sbjct: 61  GELAEYGIELVILSATDFSDQVRVLCDYCRDHGVKLLLANSEPELDEQERDKQVMAA--- 117

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI------- 182
            +  + + +  +LPPGS+LN   +M+KV+TPF+KA ++ +    +  +P PA        
Sbjct: 118 GIDLRLWQNDTILPPGSVLNQQGEMFKVFTPFKKAWLKCVAAKGIECVPTPAKSTPVKSI 177

Query: 183 -------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                  +L    TP +     DYP       +P  EQ    +L  F ++K+  Y E+RD
Sbjct: 178 GDAQAASQLPQQPTPQSSSINLDYPLVDSGR-WPDSEQVMGQLLPHFWQDKLLNYGERRD 236

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PAI+GTS LSPYL+IG +S R    +L +   +++   + GAF+WLNELIWR+FY+HL+
Sbjct: 237 FPAIKGTSGLSPYLAIGAISSRWLALQLVQRHPEVIYDTQHGAFTWLNELIWRDFYKHLL 296

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             YP +  G  F P  E + W  +    QAW +G TG+PI+DAAM+QL   GWMHNRLRM
Sbjct: 297 FHYPELIKGGSFQPKYESLPWPNNEAHFQAWCEGRTGYPIVDAAMKQLRRTGWMHNRLRM 356

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL K LLVDW  GE +FM QL+DGD ++NNGGWQWAASTG D+ PYFRIFNP  Q 
Sbjct: 357 IVASFLTKHLLVDWHKGERFFMQQLIDGDFSANNGGWQWAASTGCDAQPYFRIFNPITQS 416

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           ++FDP+G FIR +LPEL  VP + IH PH +L     +  YP PIVDHK A    L  Y 
Sbjct: 417 QKFDPRGEFIRKYLPELREVPDKQIHFPHDYLASQGKAEIYPAPIVDHKAARQRALAFYK 476


>gi|328469264|gb|EGF40210.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
          Length = 471

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 207/477 (43%), Positives = 282/477 (59%), Gaps = 12/477 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  D+ AL AA       V+A F+ATPEQW++H ++  Q+  I   L  V
Sbjct: 1   MILVWFRRDLRTLDHTALKAALDTGQ-PVVACFVATPEQWQEHHMAPMQADLIARRLEHV 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++  I   Y +   FDD  + +  +  +   T    N  YE+NEV  D+ + + L 
Sbjct: 60  HQELTELNIPLLYKEVPRFDDCTKVICDWADKLNATAAMVNINYEVNEVELDRKVSQALD 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +R +   +F D  +  P ++LN   + +KV+TPF++A +Q        S P     L   
Sbjct: 120 NRGVEFHAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLQKFS-LPTVSKPQRQNELPSA 178

Query: 188 VTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              +     FD  F     +     +     + L  LR F +E+   Y  +RD PAI GT
Sbjct: 179 QLAAVKQDAFDADFTFSYPRESSKAWCASTNDILKQLRTFARERSDGYQMKRDFPAIDGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P + 
Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENPQPDL--SEGKATWLSEIIWREFYQHLLVFEPKLV 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G+ FI W +KI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL 
Sbjct: 297 KGRGFIDWEDKIQWSYDEQAFECWKTGSTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLA 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL +DWR GEEYFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G
Sbjct: 357 KDLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            F+RHW+PE+ +VP +++H P +W   + L   Y  P+VDHK     TL  + +AK+
Sbjct: 417 QFVRHWVPEIKSVPNKFVHKPWTWEGFSLLE--YHKPMVDHKVEREITLRLFKSAKE 471


>gi|169795130|ref|YP_001712923.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Acinetobacter baumannii AYE]
 gi|169148057|emb|CAM85920.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Acinetobacter baumannii AYE]
          Length = 498

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/477 (40%), Positives = 274/477 (57%), Gaps = 15/477 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  +Q
Sbjct: 24  QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 81

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L +
Sbjct: 82  KELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 141

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187
           H      F D  + P  SI N + Q Y+V++ F+KA    L  + L    PVP  +   P
Sbjct: 142 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNEVP 201

Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   +    I + F          ++P+GEQ AL  L +F ++ V +Y  +RD P 
Sbjct: 202 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDFPH 261

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 262 IQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 321

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   ++KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMITA
Sbjct: 322 PHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 381

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 382 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 441

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           DP+G +IR W+ EL ++  + IH P+S   K+DL LNY  PIVD K+     +  + 
Sbjct: 442 DPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIETFK 496


>gi|160876317|ref|YP_001555633.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195]
 gi|160861839|gb|ABX50373.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS195]
 gi|315268506|gb|ADT95359.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS678]
          Length = 499

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 200/490 (40%), Positives = 283/490 (57%), Gaps = 14/490 (2%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQ 57
           M+     +  L+W R DLR+ DN+AL AAC     +   + A++IATP QW++H ++  Q
Sbjct: 13  MRIEVQGNNALMWFRQDLRLADNQALSAACDWARENGVALKAIYIATPTQWQRHDVAPIQ 72

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI   +  + + L+  GI F+  Q   F D   ++  YC QQ ++++F   + EINE 
Sbjct: 73  LDFIERHINLLAQGLASLGITFELIQLDTFADVPAFISDYCQQQGISRVFAGSEPEINEQ 132

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           +RD+     +Q  +     ++  LL PG++LN +  MYKV+TPF +   +   +  +  L
Sbjct: 133 QRDQA---CIQAGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREIAARHAILPL 189

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           PVPA    GPV     P  F+   +    ++  GE  A  IL  F ++KV  Y + RD P
Sbjct: 190 PVPAP--LGPVLTEPKPHLFNNVTKVSSELWAAGEGQAKRILSAFIQQKVQDYKQDRDFP 247

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           AI GTS +SPYL+IGV+SPRQC   L  +F ++++   S A +WLNEL WREFYRHL+  
Sbjct: 248 AIDGTSSISPYLAIGVVSPRQCVAALLHDFPEVIVDDTSPARTWLNELTWREFYRHLLVA 307

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +     F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ 
Sbjct: 308 FPDLSKNYNFNRQADHVQWRNNQQEFAAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVV 367

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DWR GE  F  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++
Sbjct: 368 ASFLTKHLLIDWRWGERNFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEK 427

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTL 471
           FDP G+FIR +LPEL +   + +H P +    +           YP  IV+H  A    L
Sbjct: 428 FDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFDQPLFTKTAYPSAIVEHSAARARAL 487

Query: 472 NQYYAAKKQS 481
                 KK +
Sbjct: 488 TVLGVLKKAA 497


>gi|325273235|ref|ZP_08139517.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51]
 gi|324101641|gb|EGB99205.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. TJI-51]
          Length = 473

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 198/477 (41%), Positives = 281/477 (58%), Gaps = 9/477 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL AA        +A+++ +P QWR H  +  +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSAATERG--PTVALWLVSPGQWRAHDDADCKVDFWLRNLRDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++L +  I     +   +D + + +   C Q +V  + +N +Y INE RRD    K L+
Sbjct: 59  RQALEKLNIPLLIRKIDTWDQAPQAVLDVCQQHQVQSVHWNEEYGINEQRRDAATRKLLE 118

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIR 183
              V   S+ D +L  PG+IL  +   ++V++ F+K  +++L ++      R     A++
Sbjct: 119 KASVQAHSYLDQLLFRPGTILTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAALK 178

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +     P +I  F   P +A+   +P GE +A   L +F  E +  Y++ RD+PA+ GTS
Sbjct: 179 IHSDPIPQDIDGFEKTP-RALREHWPAGEAHAQQRLSQFLDETIDDYLKTRDLPAMPGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+ GV+SPRQC +              +G  +W+NEL+WREFY+H++  YP V  
Sbjct: 238 QLSPYLAAGVISPRQCLHGALAANKGEFDSGSTGVQTWVNELLWREFYKHILTGYPQVSR 297

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F   TE + W      L+AW+QG TGFPIIDAAMRQL   GWMHNRLRMI A FL K
Sbjct: 298 HRAFRSHTEALPWRDAPGDLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMFLSK 357

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DSVPYFRIFNP  Q +RFDP+G 
Sbjct: 358 NLLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRIFNPVSQSQRFDPEGR 417

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FIRHWLPEL ++  + IH P    D      +Y  PIVD   +    L  +    ++
Sbjct: 418 FIRHWLPELRDIDEKTIHGPMKSTD-LFAGNSYHNPIVDLGSSRQRALEAFKGLPRR 473


>gi|239501100|ref|ZP_04660410.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii AB900]
          Length = 480

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 195/477 (40%), Positives = 275/477 (57%), Gaps = 15/477 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  +Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHASQQGTS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K L+   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L +
Sbjct: 64  KELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187
           H      F D  + P  SI N + Q Y+V++ F+KA    L  + L    PVP  +   P
Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNEVP 183

Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   +    I + F          ++P+GEQ AL  L +F +E V +Y  +RD P 
Sbjct: 184 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALDQLDQFIEESVCHYKLERDFPH 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           IQGTS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 IQGTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIF+P  Q K+F
Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFHPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           DP+G +IR W+ EL ++  + IH P+S   K DL LNYP PIVD K+     +  + 
Sbjct: 424 DPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLNYPKPIVDLKETRLKAIKTFK 478


>gi|119773948|ref|YP_926688.1| deoxyribodipyrimidine photo-lyase [Shewanella amazonensis SB2B]
 gi|119766448|gb|ABL99018.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella amazonensis
           SB2B]
          Length = 475

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 209/478 (43%), Positives = 282/478 (58%), Gaps = 14/478 (2%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLL 66
            LVW R DLR  DN+AL  AC +++A+   V A+FIA+P QW++H +  RQ  F+ A+L 
Sbjct: 3   TLVWFRQDLRTIDNQALTRACEDANARGGKVHALFIASPGQWQRHDMGVRQQRFLLANLN 62

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+  GI     +   F  +   L ++C +  ++ +F   Q EI+E RRD+ L   
Sbjct: 63  ALGEELASMGIPLSLLKVDFFYQTAAALKAFCKEHGISSIFAGAQIEIDERRRDQAL--- 119

Query: 127 LQHRVICKSFDDSVLLPPGSILNHA-----LQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L      +  D+  +LPPGS++          MY+V+TPF +   +      L  +P PA
Sbjct: 120 LDKGFPLQLTDEHCMLPPGSVVTQGQRDQGGAMYRVFTPFARRWREIAASRSLWPIPAPA 179

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              T PV  +    + D         +P+G+  AL  L +F +  +  Y E RD PAI G
Sbjct: 180 SVAT-PVVFTPFAFWGDINDDPALDKWPVGQDAALEKLSRFRELGMGRYGENRDFPAIDG 238

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSPYL++GV+SPRQC   L E+F D+ +   S A  WLNEL+WREFYRHL+  +P +
Sbjct: 239 TSSLSPYLALGVISPRQCLAALLEDFPDVFVNESSPARPWLNELVWREFYRHLLVAFPGL 298

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            M K F P  + I W  D    +AWK G TG+P++DAAMRQLN  GWMHNRLRM+ ASFL
Sbjct: 299 SMAKNFNPLGDGIRWRNDETEFEAWKHGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFL 358

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+DWR GE YF  QL+DG LA+NNGGWQWAA TG D+ PYFRIFNP  Q ++FDP+
Sbjct: 359 TKHLLIDWRWGERYFREQLIDGCLAANNGGWQWAAGTGCDAQPYFRIFNPMSQSEKFDPE 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           G FIR +LPEL   PT+ +H        +  S  YP PIV+H +A    L+     KK
Sbjct: 419 GRFIRKYLPELAQWPTRSLHQASGPGLFD--SSGYPSPIVEHTQARVRALDVMAVMKK 474


>gi|184159014|ref|YP_001847353.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU]
 gi|332874793|ref|ZP_08442663.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059]
 gi|183210608|gb|ACC58006.1| Deoxyribodipyrimidine photolyase [Acinetobacter baumannii ACICU]
 gi|322508994|gb|ADX04448.1| Deoxyribodipyrimidine photolyase Photoreactivation [Acinetobacter
           baumannii 1656-2]
 gi|323518978|gb|ADX93359.1| deoxyribodipyrimidine photolyase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737054|gb|EGJ68011.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6014059]
          Length = 480

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 195/477 (40%), Positives = 275/477 (57%), Gaps = 15/477 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  +Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K L+   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L +
Sbjct: 64  KELAALHIPLVIQVIPYWKEIANFISDFSKKYNIENVYANIEIGVNELKRDKNVQDYLNR 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGP 187
           H      F D  + P  SI N + Q Y+V++ F+KA    L  + L +  PVP  +   P
Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNKQNEVP 183

Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   +    I + F          ++P+GEQ AL  L +F +E V +Y  +RD P 
Sbjct: 184 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEESVCHYKVERDFPH 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 IQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T+KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKDTQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           DP+G +IR W+ EL ++  + IH P+S   K DL LNYP PIVD K+     +  + 
Sbjct: 424 DPEGEYIRQWIKELTHLDNKTIHDPYS--SKTDLGLNYPKPIVDLKETRLKAIETFK 478


>gi|171694686|ref|XP_001912267.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947585|emb|CAP59746.1| unnamed protein product [Podospora anserina S mat+]
          Length = 734

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 176/496 (35%), Positives = 263/496 (53%), Gaps = 21/496 (4%)

Query: 2   KATTAMSVHLV-WLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQ 57
           +A T ++  +V W + DLR TDN AL+ A   + A    +IA++I +P+ +  H  +  +
Sbjct: 233 RANTPVAGAVVHWFKMDLRTTDNTALFCASQKAQAAGVPLIALYILSPQDFEAHLTAPVR 292

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+  +L  ++K L+   I           +    +     +   + LF N +YE++E+
Sbjct: 293 VDFMLRTLEILKKDLAALDIPLWVETVKKRKEIPSRIVELMGEWGASHLFANMEYEVDEL 352

Query: 118 RRDKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---- 172
           RRD  + + L  R +      D+ ++PPG + + +   Y VYTP+ +  ++++ +     
Sbjct: 353 RRDARMARLLAKRGLVMDVLHDTCIVPPGRLTSGSGGQYAVYTPWFRTWVRHVHENLDLL 412

Query: 173 --------DLRSLPVPAIRLTGPVTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
                   +  S       L     PS            +    ++P GE  A+  L KF
Sbjct: 413 ELVESPTKNPESTRQKLAHLFECPIPSAPENKTLSKEDRERFRALWPAGEHEAMKRLSKF 472

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSW 281
             + +  Y + R+IP+  GTS LS + + G LS R      +       L     G  +W
Sbjct: 473 ADQAIGKYQQNRNIPSNPGTSSLSVHFASGTLSARTAVRTARGRNNTKKLDGGNEGIQTW 532

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + E+ WR+FY+H++  +P +CM KPF P    IEW+ +     AWK+G TGFPI+DAAMR
Sbjct: 533 IREVAWRDFYKHVLVQWPYICMNKPFKPEYANIEWSYNMEHFDAWKEGRTGFPIVDAAMR 592

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           QL ++GW+HNR RMI ASFL KDLL+DWR+GE+YFM  L+DGD ASNNGGW ++AS G D
Sbjct: 593 QLRSMGWVHNRCRMIVASFLCKDLLLDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGVD 652

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-DLSLNYPLPI 460
             PYFRIFNP +Q ++FDP G +IR W+PEL  V  + IH P+        +   YP  I
Sbjct: 653 PQPYFRIFNPLLQSEKFDPDGEYIRKWVPELKEVKGKAIHDPYGRGAAALAIKAGYPKHI 712

Query: 461 VDHKKACHHTLNQYYA 476
           VDHK A   TL  Y  
Sbjct: 713 VDHKGARERTLAAYKK 728


>gi|323494304|ref|ZP_08099416.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
 gi|323311467|gb|EGA64619.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
          Length = 475

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 211/476 (44%), Positives = 290/476 (60%), Gaps = 13/476 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLRI DN+AL +A   S+  V+A++IATPE W++HG++  Q+  I   L+ +
Sbjct: 1   MKLVWLRRDLRIEDNRALCSAIE-SEQPVMALYIATPETWQRHGLAPIQADLIKRRLVTL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L+   +   Y Q   +  + + +        +  +++N++YE +E  RD  L++ L 
Sbjct: 60  QTDLATINVPLYYAQVDTYQQAAQLVAEIAKSNSLDGVYFNKEYEFDEQNRDARLQELLV 119

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           H  I   SFDD   L PGS+LN     +KV+TPF++A +    Q  +  +    I     
Sbjct: 120 HAGIAAHSFDDKCALQPGSVLNKQGHYFKVFTPFKRAYLTRFYQQPISVIRPQPIGEVAQ 179

Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +       F     FDYP ++    +P+   + ++ LR F   +   Y + RDIP+I+GT
Sbjct: 180 LHGEQAQLFSDNSSFDYPTESSAT-YPVDTSSIINQLRDFVAHRSERYSDLRDIPSIEGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL+IG LS RQC  RL ++    L     G   W++ELIWREFY+HL+ F   + 
Sbjct: 239 SRLSPYLAIGALSVRQCMARLHDQHPKPLP---PGREMWMSELIWREFYQHLIYFESKLS 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            GK F+ W +++ W   S  + AWK+G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL+
Sbjct: 296 KGKCFLEWGDRLSWRNSSADIDAWKKGQTGYPIVDAAMRQLNHTGWMHNRLRMVVASFLI 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL VDW +GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG+RFDP G
Sbjct: 356 KDLHVDWHVGERYFMSKLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGERFDPDG 415

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            F+  W+PEL  VP ++IH P  W    +LS  YP PIVDHK     TL+ Y  AK
Sbjct: 416 EFVCQWIPELAAVPRKFIHQPWKWCKAKELS--YPPPIVDHKTEREITLSLYKEAK 469


>gi|219682219|ref|YP_002468603.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621952|gb|ACL30108.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086037|gb|ADP66119.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086610|gb|ADP66691.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 207/473 (43%), Positives = 296/473 (62%), Gaps = 2/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  +  + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R +
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       +         FP+GE+ A++ L+ FC  K   Y  +RD P +  TS L
Sbjct: 181 DRDIFLTSISLKNVNLNFNKSFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYLS G++S R C   L +    L +       SW ++++WREFY HL+  +P +   +
Sbjct: 241 SPYLSAGIISSRYCLKVLLKTKNSLPLNVLL-TSSWFDQILWREFYYHLLIGFPKISRSE 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L
Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GEEYF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP  Q K FD  G FI
Sbjct: 360 LINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+ +  A+
Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472


>gi|146282327|ref|YP_001172480.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501]
 gi|145570532|gb|ABP79638.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri A1501]
          Length = 476

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 196/470 (41%), Positives = 276/470 (58%), Gaps = 7/470 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+WLR+DLR +DN AL +A        +AV++ TP QW  H  +A +  F   +L+++
Sbjct: 2   TQLIWLRSDLRTSDNTALASAMAAG--PTVAVYLITPGQWLAHDDAACKVDFWLRNLVEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L    +         +  + + L   C +  V +L YN +Y +NE RRD+ +  RL+
Sbjct: 60  AGRLQALNVPLLIRDVEEWQAAPDALLKLCQELAVQRLHYNGEYGVNEQRRDQAVAARLR 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I  + + D +L  PGS+L  +   +KV+  FR+A +  L  +    +  PA +    
Sbjct: 120 AAGIDVRRYLDQLLFAPGSVLTQSGGYFKVFGQFRRACLARLSMSLPACVAPPAPQHPMT 179

Query: 188 VT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           V    P +  R FD P   +  ++P GE  A H L  F  + ++ Y ++RD+PA  GTSQ
Sbjct: 180 VASDVPPDEVRGFDRPSDYLRTLWPAGETFAQHRLAAFIGDDLHQYHQRRDLPAEPGTSQ 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+S RQC +         L    +GA +W+NEL+WREFY+H++  YP V M 
Sbjct: 240 LSAYLAAGVISIRQCLHAAVASNRGELDSGSAGATTWINELLWREFYKHILVGYPRVSMH 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W + +  LQAW++G TGFPIIDAAMRQL   GWMHNRLRM+TA FL K+
Sbjct: 300 RAFRAETEALPWRRATDELQAWQEGRTGFPIIDAAMRQLRETGWMHNRLRMVTAMFLSKN 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DSVPYFR+FNP  Q +RFDP G F
Sbjct: 360 LLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQSQRFDPDGQF 419

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +R WLPEL  +  + IH P S         +YP PI+D  ++    L+ +
Sbjct: 420 LRRWLPELQGLGKREIHNP-STQRSLFGKADYPAPIIDLGESRARALDAF 468


>gi|145605824|ref|XP_370339.2| hypothetical protein MGG_06836 [Magnaporthe oryzae 70-15]
 gi|145013607|gb|EDJ98248.1| hypothetical protein MGG_06836 [Magnaporthe oryzae 70-15]
          Length = 595

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 169/486 (34%), Positives = 249/486 (51%), Gaps = 20/486 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN AL  A     ++   +IA++  +P+ W  H  +  +  F   SL  
Sbjct: 104 VHWFKMDLRVADNTALRLASEKAKSAGVPLIALYTVSPKDWEAHLRAPVRVDFTLRSLEV 163

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ L++  I        +     + + S   +   + L+ N +YE++E+RR+  L + L
Sbjct: 164 LRQDLAKLDIPLHVETVDDRRAMKQRVLSLMEEWDASHLYANMEYEVDELRREANLVRLL 223

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                  +   D+ ++PPG +     + Y VY+P+ +A +++L        P+       
Sbjct: 224 AENGKSMEVVHDTCVVPPGKLQTGTGRQYAVYSPWYRAWLKHLSGDPELLEPMEPPHKNP 283

Query: 187 PVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                     FD                 Q +  M+P GE  A   L  F K ++  Y  
Sbjct: 284 ASAREKFSHLFDGKIPAAPKSKQMNEEEQQRLAAMWPAGEHEARKRLDAFIKRRIDGYAA 343

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFY 291
           +R+ PA  GTS +S +L+ G LS R   +   +      L     G  +W++E+ WR+FY
Sbjct: 344 KRNFPADDGTSSISVHLAAGTLSARTAVHLAHKASGTRKLDGGSQGIQTWISEVAWRDFY 403

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    I W+ D     AW +G TGFPI+DAAMRQL   GWMHN
Sbjct: 404 KHVLVNWPYVCMNKPFKPEYSNIAWSYDMEHFAAWCEGRTGFPIVDAAMRQLRGTGWMHN 463

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL KD L+DWR+GE YFM  L+DGD ASNNGGW +AAS G D  PYFR+FNP
Sbjct: 464 RCRMIVASFLAKDFLIDWRMGERYFMENLVDGDFASNNGGWGFAASVGVDPQPYFRVFNP 523

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHT 470
            +Q ++FDP G +IR W+PEL  +  + IH P+      +     YP P+VDHK      
Sbjct: 524 LLQSEKFDPNGEYIRKWIPELKGIKGKAIHDPYGRGCGVEAKKKGYPKPLVDHKGCRERA 583

Query: 471 LNQYYA 476
           L  Y  
Sbjct: 584 LKAYKE 589


>gi|311087720|gb|ADP67799.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 205/473 (43%), Positives = 295/473 (62%), Gaps = 2/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  +  + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R +
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       +         FP+GE+ A++ L+ FC  K   Y  +RD P +  TS L
Sbjct: 181 DRDIFLTSISLKNVNLNFNKSFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYLS G++S R C   L +    L +        W ++++WREFY HL+  +P +   +
Sbjct: 241 SPYLSAGIISSRYCLKVLLKTKNSLPLNVLL-TSPWFDQILWREFYYHLLIGFPKISRSE 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L
Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GE+YF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP  Q K FD  G FI
Sbjct: 360 LINWREGEKYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+ +  A+
Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472


>gi|301345220|ref|ZP_07225961.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB056]
 gi|301596996|ref|ZP_07242004.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB059]
          Length = 480

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/477 (40%), Positives = 275/477 (57%), Gaps = 15/477 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  +Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L +
Sbjct: 64  KELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGP 187
           H      F D  + P  SI N + Q Y+V++ F+KA    L  + L +  PVP  +   P
Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNKQNEVP 183

Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   +    I + F          ++P+GEQ AL  L +F ++ V +Y  +RD P 
Sbjct: 184 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDFPH 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 IQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   ++KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           DP+G +IR W+ EL ++  + IH P+S   K+DL LNY  PIVD K+     +  + 
Sbjct: 424 DPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIETFK 478


>gi|261251524|ref|ZP_05944098.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891]
 gi|260938397|gb|EEX94385.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891]
          Length = 475

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 220/478 (46%), Positives = 292/478 (61%), Gaps = 13/478 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VWLR DLR+ DN AL  A   S   V AV+IATP+ W++H ++  Q+  I+  LL +
Sbjct: 1   MKIVWLRRDLRVDDNTALVEAV-MSGGSVAAVYIATPKTWQRHNMAPIQADLIFRRLLVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRL 127
           ++ LS K I   Y +   + D+ + L     Q     +++N QYE++E++RD+ L+ + L
Sbjct: 60  KQELSAKNIPLYYAEVPTYRDAAQLLADVAQQSDAGSVYFNHQYEVDEIQRDRHLVNQLL 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              + C  FDD  +L PGS++N   + YKV+TPF++A  Q L Q  +    V  +     
Sbjct: 120 DTNIECVGFDDKCVLSPGSVVNKQREYYKVFTPFKRAYCQRLYQTPISVKRVIEVGSVAE 179

Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           ++   +  F     F YP    +  F +  +N +  LR F  EKV  Y  QRD P ++GT
Sbjct: 180 LSSEKVTHFHPKVEFSYPRVTSERYF-VDTKNIIQKLRDFESEKVDAYALQRDFPEMEGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLSPYL+IG LS RQC  RL     +       G   WL+EL+WREFY+HL+ F P + 
Sbjct: 239 SQLSPYLAIGALSVRQCLIRLL---CNNPPPIAGGREVWLSELVWREFYQHLIYFEPKLS 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G  F  W + + W  +   ++AWK G TG+PI+DAAM QLN  GWMHNRLRMI ASFLV
Sbjct: 296 KGHSFTSWGDNLVWRNNPAEIEAWKLGRTGYPIVDAAMAQLNRTGWMHNRLRMIVASFLV 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL VDWRIGEEYFMS+L+DGD A+NNGGWQW ASTG D  PYFR+FNPT QG++FD + 
Sbjct: 356 KDLHVDWRIGEEYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRVFNPTTQGEKFDSEA 415

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +FIR WLPEL  VP +YIH P  W +   LS  YP PIVDHK     TL  Y  AK+ 
Sbjct: 416 SFIRSWLPELEEVPDRYIHKPWCWPNAKSLS--YPTPIVDHKAEREITLALYKDAKEN 471


>gi|311087193|gb|ADP67273.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 206/473 (43%), Positives = 295/473 (62%), Gaps = 2/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  +  + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R +
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       +         FP+GE+ A++ L+ FC  K   Y  +RD P +  TS L
Sbjct: 181 DRDIFLTSISLKNVNLNFNKSFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYLS G++S R C   L +    L +        W ++++WREFY HL+  +P +   +
Sbjct: 241 SPYLSAGIISSRYCLKVLLKTKNSLPLNVLL-TSPWFDQILWREFYYHLLIGFPKISRSE 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L
Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GEEYF+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP  Q K FD  G FI
Sbjct: 360 LINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+ +  A+
Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472


>gi|215482677|ref|YP_002324873.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii
           AB307-0294]
 gi|301511002|ref|ZP_07236239.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB058]
 gi|213987651|gb|ACJ57950.1| Deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii
           AB307-0294]
          Length = 480

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 193/477 (40%), Positives = 274/477 (57%), Gaps = 15/477 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  +Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L +
Sbjct: 64  KELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187
           H      F D  + P  SI N + Q Y+V++ F+KA    L  + L    PVP  +   P
Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNEVP 183

Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   +    I + F          ++P+GEQ AL  L +F ++ V +Y  +RD P 
Sbjct: 184 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDFPH 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 IQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   ++KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           DP+G +IR W+ EL ++  + IH P+S   K+DL LNY  PIVD K+     +  + 
Sbjct: 424 DPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIETFK 478


>gi|229514567|ref|ZP_04404028.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
 gi|229348547|gb|EEO13505.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
          Length = 469

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 210/474 (44%), Positives = 287/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  +I  +FDD  +LPPGS+     + +KV+TPF++A +       +      A+     
Sbjct: 120 EQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNVPS 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 ALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|262164645|ref|ZP_06032383.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
 gi|262027025|gb|EEY45692.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
          Length = 469

 Score =  444 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 212/474 (44%), Positives = 284/474 (59%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA  + +  V AV++ATP+QW QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVATPQQWLQHHLAPIQADFIWRRLSAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   I   Y Q ++F ++   ++         ++  NR YE++E +RD   E+ L 
Sbjct: 60  QQELAAINIPLFYQQVADFREAAHAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S FDD  +LPPGS+       +KV+TPF++A +       +      A      
Sbjct: 120 EQGISWSAFDDKCILPPGSVRTKQGDFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWDVPN 179

Query: 188 VTP---SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                  N  + F+YP +     +P+  +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 EFSHLVWNTDQVFNYP-RVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSV 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEPNISKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  DS   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP P+VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPAPLVDHKQEREVTLRLYKTAK 468


>gi|153827504|ref|ZP_01980171.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae MZO-2]
 gi|149738567|gb|EDM52922.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae MZO-2]
          Length = 469

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 216/475 (45%), Positives = 291/475 (61%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S FDD  +LPPGS+     + +KV+TPF++A +  L Q  +     PA     P
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL-TLFQPPVIGKNRPAALWDVP 178

Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            T + +     + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS
Sbjct: 179 STLAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++  
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 296 SRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 356 DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 416 FIRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|153831640|ref|ZP_01984307.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01]
 gi|148872150|gb|EDL70967.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01]
          Length = 471

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 205/476 (43%), Positives = 285/476 (59%), Gaps = 10/476 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  D+ AL AA       V+A F++TPEQW++H ++  Q+  I   L+ +
Sbjct: 1   MILVWFRRDLRTLDHTALKAALDTGQ-PVVAGFVSTPEQWQEHNMAPMQADLIARRLVHL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
            + L+   I   Y +   F +  E +  + L      +  N  YE+NE   D+ +   L 
Sbjct: 60  NEELADLNIPLLYKEVPKFSNVTEVIKDWALSLNAKSVMANIHYEVNEQALDREVADVLA 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + +V  ++F D  +  P ++LN   + +KV+TPF++A +       +      A      
Sbjct: 120 KSQVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKFQMPMVSKPEPQAEIPQEA 179

Query: 188 VTPSNIPRFF-DYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           + P    R+  D PF   +     + +   + +H LR+F +E+   Y E+RD+P++ GTS
Sbjct: 180 IQPLEADRYHADVPFTYPRESSDQWYVSTSDIVHHLREFARERSDAYQEKRDLPSVDGTS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P +  
Sbjct: 240 QLSPYLAIGALSPRQCIARLYAENPHTDL--TDGKATWLSEIIWREFYQHLLVFEPKLVK 297

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           GK FIPW +KIEW+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 298 GKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNATGWMHNRLRMIVASFLTK 357

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  GT
Sbjct: 358 DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGT 417

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           F+R+W+PE+  VP ++IH P  W   N L  +Y  P+VDHK     TL  +  AK+
Sbjct: 418 FVRYWVPEIKQVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471


>gi|15600828|ref|NP_232458.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121585968|ref|ZP_01675761.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae 2740-80]
 gi|153820061|ref|ZP_01972728.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae NCTC 8457]
 gi|227811685|ref|YP_002811695.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229506767|ref|ZP_04396276.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
 gi|229510438|ref|ZP_04399918.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
 gi|229517431|ref|ZP_04406876.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
 gi|229605241|ref|YP_002875945.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
 gi|254850324|ref|ZP_05239674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
 gi|255746116|ref|ZP_05420063.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
 gi|262158603|ref|ZP_06029717.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
 gi|298499922|ref|ZP_07009728.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
 gi|81858027|sp|Q9KNA8|PHR_VIBCH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|9657440|gb|AAF95971.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549904|gb|EAX59924.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae 2740-80]
 gi|126509396|gb|EAZ71990.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae NCTC 8457]
 gi|227010827|gb|ACP07038.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229345467|gb|EEO10440.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
 gi|229352883|gb|EEO17823.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
 gi|229357118|gb|EEO22036.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
 gi|229371727|gb|ACQ62149.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
 gi|254846029|gb|EET24443.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
 gi|255735870|gb|EET91268.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
 gi|262029483|gb|EEY48133.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
 gi|297541903|gb|EFH77954.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
          Length = 469

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/474 (44%), Positives = 288/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+L ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLS 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  +I  +FDD  +LPPGS+     + +KV+TPF++A +       +      A+     
Sbjct: 120 EQGIIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPVALWNVPS 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 ALAELVWHPEQAFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|30315019|gb|AAP30741.1|AF500083_1 photolyase [Fusarium oxysporum]
          Length = 630

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 171/486 (35%), Positives = 263/486 (54%), Gaps = 20/486 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR++DN+AL  A      +   +IA++I +P+ +  H  S  +  F+  +L  
Sbjct: 139 VHWFKMDLRLSDNRALALASDKAKEAGVPLIAMYIISPQDYEAHLRSPVRVDFMLRTLEV 198

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKR 126
           ++  L++  I              + +     Q     L+ N +YE++E+RR+  ++   
Sbjct: 199 IKHDLAKLDIPLYVETVEKRKRVPDRILELMDQWGAGHLYANMEYEVDELRREASMIRDF 258

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--------DLRSLP 178
            ++    +   D+ ++PPG +   A + Y VYTP+ ++ + ++ +              P
Sbjct: 259 AENGKAFEVVHDTCVVPPGELHTGAGKQYAVYTPWYRSWVAHIHENLDLLELYEPPEKNP 318

Query: 179 VPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             A ++   +    IP      R      + +  ++P GE  A   L KFC+E +  Y +
Sbjct: 319 SSARKVFAKLFDVEIPDAPKSKRLDGEEKERLRSLWPCGEHEAKKRLDKFCEEMIGNYQK 378

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
           +R+IPA  GTS +S +L+ G +S R C    ++      L     G  +W++E+ WR+FY
Sbjct: 379 KRNIPAEAGTSSISVHLASGTISARTCVRTARDRNKTKKLNGGNEGIQTWISEVAWRDFY 438

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    I W+ D+    AW +G TGFPI+DAAMRQLN +G+MHN
Sbjct: 439 KHVLVHWPYVCMNKPFKPEYSNISWSYDNEHFAAWCEGRTGFPIVDAAMRQLNHLGYMHN 498

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI A FL KDLL+DWR GE YFM  L+DGD ASNNGGW ++AS G D  PYFRIFNP
Sbjct: 499 RCRMIVACFLAKDLLLDWRKGERYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRIFNP 558

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470
            +Q ++FDP G +IR W+PEL ++  + IH P++    +    N YP PIV HK      
Sbjct: 559 LLQSEKFDPDGDYIRKWVPELKDLDRKAIHDPYNRGAGSKAKKNGYPAPIVTHKDCRDRA 618

Query: 471 LNQYYA 476
           L  Y  
Sbjct: 619 LAAYKE 624


>gi|229522729|ref|ZP_04412145.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
 gi|229340714|gb|EEO05720.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
          Length = 469

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/474 (44%), Positives = 286/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  ++  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLMWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S FDD  +LPPGS+     + +KV+TPF++A +       +      A+     
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWGVPS 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 ALAELVWHPEQAFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL  E    + +P  GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGEPSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 LDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|254284783|ref|ZP_04959750.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae AM-19226]
 gi|150425568|gb|EDN17344.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae AM-19226]
          Length = 469

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/474 (44%), Positives = 286/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S FDD  +LPPGS+     + +KV+TPF++A +       +      A+     
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWNVPS 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 ALAELVWHPEQTFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|229527954|ref|ZP_04417345.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
 gi|229334316|gb|EEN99801.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
          Length = 469

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/474 (44%), Positives = 286/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S FDD  +LPPGS+     + +KV+TPF++A +       +      A+     
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 AFAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|153212812|ref|ZP_01948448.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae 1587]
 gi|124116325|gb|EAY35145.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae 1587]
          Length = 469

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/474 (44%), Positives = 286/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S FDD  +LPPGS+     + +KV+TPF++A +       +      A+     
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWNVPS 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 ALAELVWHPEQTFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|258622171|ref|ZP_05717197.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio mimicus VM573]
 gi|258585495|gb|EEW10218.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio mimicus VM573]
          Length = 469

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 209/474 (44%), Positives = 284/474 (59%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL  A  + +  V AV++ATP+QW+QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWFRRDLRSFDNTALTVAIESGET-VAAVYVATPQQWQQHHLAPIQADFIWRRLAAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F ++   ++         ++  NR YE++E +RD   E+ L 
Sbjct: 60  QQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S FDD  +LPPGS+     + +KV+TPF++A +       +      A      
Sbjct: 120 EQGILWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWDVSN 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    + FDY  +     +P+  +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 EFSHLVWHTDQIFDY-TRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSV 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEPNISKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  DS   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP P+VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPAPLVDHKQEREVTLRLYKTAK 468


>gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
 gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
          Length = 471

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 169/480 (35%), Positives = 253/480 (52%), Gaps = 19/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  VI ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     +     D  E +     Q  V  +++NR YE   + RDK ++  
Sbjct: 57  ALGKSLNQQGLSLVLRKG----DPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLA 112

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R +  +SF+ ++L  P +I N     +KV+TP+ K   Q L         +      
Sbjct: 113 LGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL--NIPSPFMLTKRPRG 170

Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +T  ++ ++   P           +  GE+ A   L +F    +  Y  +RD PA   
Sbjct: 171 IEITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFPAKNA 230

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G +SP     R  E          +    +L+EL WREF  +L+  +P +
Sbjct: 231 TSRLSPHLHFGEISPW-VILRALELAKLEQTCDLASVEHFLSELGWREFSVYLLYHFPKL 289

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                F    +   W  D  LL  W++G TG+PIIDA MR+L   G+MHNR+RMI ASFL
Sbjct: 290 DCEN-FRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFL 348

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDLL+DWR G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP +Q ++FDP 
Sbjct: 349 TKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPD 408

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479
           G +IR W+PEL  + +Q IH P +  D N +     YP PI+DH++A    L+ Y   KK
Sbjct: 409 GIYIRQWIPELAQLNSQSIHQPWTDADANSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468


>gi|50084372|ref|YP_045882.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Acinetobacter sp. ADP1]
 gi|49530348|emb|CAG68060.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Acinetobacter sp. ADP1]
          Length = 477

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 184/475 (38%), Positives = 268/475 (56%), Gaps = 12/475 (2%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W RNDLR+ D+ AL+ A        IA    +P QW+QH  +  +  F    L Q++
Sbjct: 3   QLIWFRNDLRLNDHAALWHATQAGST--IAFVALSPLQWQQHDDAIIKIDFYMRQLTQLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L+   I         + D    + S   +  +  ++ N +  INE+ RD  +++ L  
Sbjct: 61  QELNTINIPLIVQIIPLWKDIATEIISISDRYHIQDVYANIETGINEIERDHAVQEALSK 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                  F D  L P GSI N +   Y+V+TPF+K   + L     +  P P  +   P 
Sbjct: 121 IGKNLILFHDKTLFPLGSIRNKSQAPYQVFTPFKKTCYERLNIDIPKCFPYPHKQKQQPE 180

Query: 189 ---TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                + IP      +  ID      +PIGE  AL++L  F ++K+  Y E RD PA  G
Sbjct: 181 IAKKEAAIPSLKQLGYSQIDQHIQNEWPIGETFALNLLEDFTQDKINRYHESRDYPAQDG 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS +S YL+IG+LS RQC   + ++          G   WLNEL+WREFY+ L+  +P +
Sbjct: 241 TSHISAYLTIGILSIRQCIQAIFQKQHGQFFLNNKGQEIWLNELLWREFYQQLLFDFPKL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +PF   T+ I WN++    +AW QG TG PI+DA MRQL   GWMHNR+RMI A FL
Sbjct: 301 SRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVDAGMRQLKATGWMHNRVRMICAMFL 360

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K+LL+DWR GE++FM  L+DGDLA+N+GGWQW+ASTG D+ PYFRIFNP  Q ++FDP+
Sbjct: 361 SKNLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSASTGTDASPYFRIFNPVTQSQKFDPE 420

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           G F++ W+PEL ++ +++IH P+++  K +L  NYP PI+D K    + +  +  
Sbjct: 421 GVFLKKWIPELKHLDSKHIHDPYAYQHKTEL--NYPKPIIDLKATRKNAIEVFKK 473


>gi|229526306|ref|ZP_04415710.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
           VL426]
 gi|229336464|gb|EEO01482.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
           VL426]
          Length = 469

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/474 (44%), Positives = 285/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQFLS 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I   +FDD  +LPPGS+     + +KV+TPF++A +       +      A+     
Sbjct: 120 EQGITWFAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWNVPS 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 ALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P  W      S+ YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQP--WTYPAINSVLYPARLVDHKQEREVTLRLYKTAK 468


>gi|156976349|ref|YP_001447255.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
 gi|156527943|gb|ABU73028.1| hypothetical protein VIBHAR_05122 [Vibrio harveyi ATCC BAA-1116]
          Length = 471

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 206/476 (43%), Positives = 284/476 (59%), Gaps = 10/476 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  D+ AL AA       V+A F++TPEQW++H ++  Q+  I   L+ +
Sbjct: 1   MILVWFRRDLRTLDHTALKAALDTGQ-PVVAAFVSTPEQWQEHNMAPMQADLIARRLVHL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
            + L+   I   Y +   F D    +  + L      +  N  YE+NE   D+ +   L 
Sbjct: 60  DEELADLNIPLLYKEVPKFSDVTGVIKGWALSLNAKSVMANIHYEVNEQALDREIADVLA 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + +V  ++F D  +  P ++LN   + +KV+TPF++A +       +      A  L   
Sbjct: 120 KSQVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKFQMPMVSKPQPQAEILQEA 179

Query: 188 VTPSNIPRFF-DYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             P    R+  D PF   +     + +   + +H LR+F +E+   Y E+RD+P++ GTS
Sbjct: 180 TQPLEADRYHADVPFTYPRESSEQWFVSTSDIVHHLREFARERSDAYQEKRDLPSVDGTS 239

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P +  
Sbjct: 240 QLSPYLAIGALSPRQCIARLYAENPHTDL--TDGKATWLSEIIWREFYQHLLVFEPKLVK 297

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           GK FIPW +KIEW+ D    + WK G TG+PI+DAAMRQLNT GWMHNRLRMI ASFL K
Sbjct: 298 GKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLTK 357

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G 
Sbjct: 358 DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDGA 417

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           F+R+W+PE+  VP ++IH P  W   N L  +Y  P+VDHK     TL  +  AK+
Sbjct: 418 FVRYWVPEIKQVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471


>gi|183179740|ref|ZP_02957951.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae MZO-3]
 gi|183013151|gb|EDT88451.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae MZO-3]
          Length = 469

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 207/473 (43%), Positives = 286/473 (60%), Gaps = 8/473 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTG 186
            + I  S FDD  +LPPGS+     + +KV+TPF++A +       + ++ P     +  
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWNVPS 179

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +          + +  +D   +    +     LR FC+E+V  Y + RD PA +GTS L
Sbjct: 180 ALAELVWHPEQTFGYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSSL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++   +
Sbjct: 240 SPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKSR 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KDL
Sbjct: 298 DFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G FI
Sbjct: 358 HIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDFI 417

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 418 RRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|149187439|ref|ZP_01865737.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
 gi|148838975|gb|EDL55914.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
          Length = 467

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 209/472 (44%), Positives = 284/472 (60%), Gaps = 6/472 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LV    DLR+TDN AL  A  + +  VIA F+ATPEQW+ H +S  Q+  I+  L  +
Sbjct: 1   MRLVLFNRDLRVTDNTALIEAI-DGETPVIAAFVATPEQWKSHSLSPIQADLIWRRLTVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L Q  +   Y +  ++  +  WL   C Q  V ++F NR YEINE  R + L +   
Sbjct: 60  QSELKQINVPLIYQEAQDYAAANTWLAEICHQFDVQEVFLNRDYEINEANRIQELSEIAG 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                ++FDD  +L PGS+LN     +KV+TPF+KA ++ + +  +R   V A+      
Sbjct: 120 TEWRVRAFDDKCILKPGSVLNQKGDYFKVFTPFKKAWLKIVGEFIVRKPQVSALVTAPAN 179

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
              +    F YP +     + +     +  LR F  +K   Y  +RD PA+  TS LSPY
Sbjct: 180 LLFDSSSSFSYPTRDS-SGWSVDSHEIIQQLRDFSADKANLYHAERDFPALDSTSMLSPY 238

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+IG +S RQC  RLK  +        +GA +WL+ELIWREFY+HL+ F P +C    ++
Sbjct: 239 LAIGAISARQCVARLK--YDAANTSLSTGAETWLSELIWREFYQHLIYFEPKLCKHHGYL 296

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
            W + ++W       + W +G TG+PI+DAAMRQLNT GWMHNRLRM+ ASFL KDL +D
Sbjct: 297 SWEKHLKWTGKLDHFKQWCEGKTGYPIVDAAMRQLNTKGWMHNRLRMVVASFLTKDLHID 356

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+GE+YFM+QL+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FD  G FIR W
Sbjct: 357 WRLGEQYFMTQLIDGDFAANNGGWQWCASTGCDGQPYFRIFNPISQGEKFDANGEFIRTW 416

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +PELN+VP ++IH P  W +  ++  +YP PIVDHK     TL  Y  AK Q
Sbjct: 417 IPELNSVPNKFIHKPWLWNEFENV--DYPQPIVDHKIQRDITLALYKDAKDQ 466


>gi|322696650|gb|EFY88439.1| photolyase [Metarhizium acridum CQMa 102]
          Length = 587

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 177/492 (35%), Positives = 257/492 (52%), Gaps = 22/492 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A    + W + DLR  DN+AL  A      +   +I ++I +P+ +  H  S  +  FI 
Sbjct: 91  AKDSVVHWFKTDLRCNDNRALALASEKAKEAAVPLICMYIVSPQDFEAHLTSPVRVDFIL 150

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  ++K L+   I              + +     Q     LF N +YE++E+RR+  
Sbjct: 151 RTLEILKKDLANLDIPLYIETVERRKQIPDKILELMEQWGSRHLFANMEYEVDELRREAN 210

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
           L   L       +   D+ ++PPG + + +   Y VY+P+ ++ + ++    +L  L  P
Sbjct: 211 LVHDLAENGKSFEVVHDTCVVPPGQLRSGSGNQYAVYSPWYRSWVAHIHADLELLELFDP 270

Query: 181 AIRLTG--------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
             +  G              P  PSN  +      +    ++P GE  A   L KFC+EK
Sbjct: 271 PNKNPGTARKQFKDLFECAVPEAPSN-KQLTKEEKRRFHSLWPAGESAAKERLEKFCEEK 329

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNEL 285
           V  Y   R+IP   GTS LS +L+ G +S R C    ++      L     G   W++E+
Sbjct: 330 VGGYSNNRNIPGEDGTSSLSVHLASGTISSRTCVRTARDRNKTKRLDAGNEGIRVWISEV 389

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR+FY+H++  +P VCM KP+ P    I W+ +     AW +G TGFPI+DAAMRQLN 
Sbjct: 390 AWRDFYKHVLVHWPYVCMNKPYKPEYSNIAWSYNEEHFNAWCEGRTGFPIVDAAMRQLNH 449

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+MHNR RMI ASFL KDLL+DWR GE YFM  L+DGD ASNNGGW ++AS G D  PY
Sbjct: 450 NGYMHNRCRMIVASFLSKDLLIDWRKGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPY 509

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHK 464
           FRIFNP +Q ++FDP+G +IR W+PEL ++ ++ IH P+            YP PIV+HK
Sbjct: 510 FRIFNPLLQSEKFDPEGVYIRKWVPELQDLDSKEIHEPYGRGAGGKAKKAGYPKPIVNHK 569

Query: 465 KACHHTLNQYYA 476
                 L+ Y  
Sbjct: 570 DCRDRALDAYKE 581


>gi|322707580|gb|EFY99158.1| photolyase [Metarhizium anisopliae ARSEF 23]
          Length = 587

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 176/492 (35%), Positives = 259/492 (52%), Gaps = 22/492 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIY 62
           A    + W + DLR  DN+AL  A   +      +I ++I +P+ +  H  S  +  FI 
Sbjct: 91  AKDSVIHWFKTDLRCNDNRALALASEKAKETAVPLICMYIVSPQDFEAHLTSPVRVDFIL 150

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  +++ L++  I              + +     Q     LF N +YE++E+RR+  
Sbjct: 151 RTLEILKRDLAKLDIPLYIETVERRKQIPDRVLELMEQWGSRHLFANMEYEVDELRREAN 210

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVP 180
           +   L       +   D+ ++PPG + + +   Y VY+P+ ++ + ++    DL  L  P
Sbjct: 211 MVHDLAENGKSFEVVHDTCVVPPGQLQSGSGNQYAVYSPWYRSWVAHIHADLDLLELFDP 270

Query: 181 AIRLTG--------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
             +  G              P  PSN         +    ++P GE  A   L KFC+E+
Sbjct: 271 PNKNPGTARKRFKDLFDCAVPEAPSN-KELTKEEKRRFHSLWPAGENAAKERLDKFCEER 329

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNEL 285
           +  Y + R+IPA  GTS LS +L+ G +S R C    ++      L     G   W++E+
Sbjct: 330 IGGYSDNRNIPAEDGTSSLSVHLASGSISSRTCVRTARDRNKTKKLDGGNEGIRVWISEV 389

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR+FY+H++  +P VCM KP+ P    I W+ +    +AW +G TGFPI+DAAMRQLN 
Sbjct: 390 AWRDFYKHVLVHWPYVCMNKPYKPEYSNIAWSYNEEHFKAWCEGRTGFPIVDAAMRQLNH 449

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+MHNR RMI ASFL KDLL+DWR GE YFM  L+DGD ASNNGGW ++AS G D  PY
Sbjct: 450 NGYMHNRCRMIVASFLSKDLLIDWRKGERYFMEHLIDGDFASNNGGWGFSASVGVDPQPY 509

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHK 464
           FRIFNP +Q ++FDP+G +IR W+PEL ++  + IH P+            YP PIV+HK
Sbjct: 510 FRIFNPLLQSEKFDPEGVYIRKWVPELQDLDNKEIHDPYGRGAGAKARKAGYPKPIVNHK 569

Query: 465 KACHHTLNQYYA 476
                 LN Y  
Sbjct: 570 DCRDRALNAYKE 581


>gi|254224596|ref|ZP_04918212.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae V51]
 gi|125622659|gb|EAZ50977.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae V51]
          Length = 469

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 210/474 (44%), Positives = 285/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL  A ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTTALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S FDD  +LPPGS+     + +KV+TPF++A +       +      A+     
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 ALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|254505847|ref|ZP_05117992.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16]
 gi|219551070|gb|EED28050.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus 16]
          Length = 465

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 216/466 (46%), Positives = 296/466 (63%), Gaps = 12/466 (2%)

Query: 18  LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77
           +R  DN AL AA  + +  VIA F+ATP+ WR+H ++  Q+  I   L++++  LS+  I
Sbjct: 1   MRTIDNTALNAAIESGE-PVIAAFVATPDSWREHKMAPIQADLIKRRLVELKSELSELNI 59

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSF 136
              Y +  ++  S++ + S+  Q  VT +  N++YE+NEV RD   E +L    V    +
Sbjct: 60  PLIYSEAPDYSSSVDVVLSWVKQYGVTNVHVNKEYELNEVSRDDKAESKLSELGVPLHRY 119

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRLTGPVTPSNIPR 195
           DD     PGS++N     +KV+TP+++A +Q L Q  ++   V  A+ L   + P +I +
Sbjct: 120 DDKCHFAPGSVVNKQGHYFKVFTPYKRAYLQKLEQYPVQVQKVKGAVELGRELRPQDILQ 179

Query: 196 F---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG 252
               F YP +  D ++P+     L +LR F  E+   Y   RD P+I+GTS+LS YL+IG
Sbjct: 180 HDMTFSYPTECSD-VYPVKTTQILELLRAFVNERSDDYQADRDFPSIEGTSRLSLYLAIG 238

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312
            LS RQC  RL     + ++    G  +WL+ELIWREFY+HL+ F P +  G+ F+PW  
Sbjct: 239 ALSVRQCMARLL---YEQILPLSEGRQTWLSELIWREFYQHLIYFEPKLSRGESFLPWGR 295

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            + W  D   +QAWK+G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL+KDL VDWRIG
Sbjct: 296 HLTWQNDEKRIQAWKEGMTGYPIVDAAMRQLNQTGWMHNRLRMIAASFLIKDLQVDWRIG 355

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           E+YFMS+L+DG+ ++NNGGWQW ASTG D  PYFRIFNPT QG+RFDP+G F+RHW+PEL
Sbjct: 356 EDYFMSKLIDGEYSANNGGWQWCASTGCDGQPYFRIFNPTTQGERFDPKGDFVRHWVPEL 415

Query: 433 NNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            NVP +YIH P  W +   +S  YP PIVDHK     TL  Y  AK
Sbjct: 416 KNVPDKYIHQPSKWANAKGVS--YPSPIVDHKAQREITLANYKNAK 459


>gi|219681664|ref|YP_002468050.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471353|ref|ZP_05635352.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624507|gb|ACL30662.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 205/473 (43%), Positives = 294/473 (62%), Gaps = 2/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVHDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  +  + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R +
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       +         FP+GE+ A++ L+ FC  K   Y  +RD P +  TS L
Sbjct: 181 DRDIFLTSISLKNVNLNFNKNFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYLS G++S R C   L +    L +        W ++++WREFY HL+  +P +   +
Sbjct: 241 SPYLSAGIISSRYCLKVLLKTKNSLPLNVLL-TSPWFDQILWREFYYHLLIGFPKIGRSE 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L
Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GEEYF+S L+DGDLA NNGGWQW+AS G DS PY RIFNP  Q K FD  G FI
Sbjct: 360 LINWREGEEYFISNLIDGDLALNNGGWQWSASVGCDSAPYIRIFNPLHQSKTFDESGNFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+ +  A+
Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472


>gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
 gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
          Length = 471

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 167/480 (34%), Positives = 253/480 (52%), Gaps = 19/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  VI ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     + +      E +     Q  V  +++NR YE   + RDK ++  
Sbjct: 57  ALGKSLNQQGLCLVLRKGAP----QEIILELVAQYGVESVYWNRCYEPQAIARDKKIKLA 112

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R +  +SF+ ++L  P +I N     +KV+TP+ K   Q L         +      
Sbjct: 113 LGEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL--NIPSPFMLTKRPRG 170

Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +T  ++ ++   P           +  GE+ A   L +F    +  Y  +RD PA   
Sbjct: 171 IKITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFPAKNA 230

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G +SP     R  E          +    +L+EL WREF  +L+  +P +
Sbjct: 231 TSRLSPHLHFGEISPW-VILRALELAKLEQTCDLASVEHFLSELGWREFSVYLLYHFPKL 289

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                F    +   W  D  LL  W++G TG+PIIDA MR+L   G+MHNR+RMI ASFL
Sbjct: 290 DCEN-FRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFL 348

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDLL+DWR G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP +Q ++FDP 
Sbjct: 349 TKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPD 408

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479
           G +IR W+PEL  + +Q IH P +  D + +     YP PI+DH++A    L+ Y   KK
Sbjct: 409 GVYIRQWIPELAQLNSQSIHQPWTDADASSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468


>gi|3947746|emb|CAA08916.1| DNA photolyase [Trichoderma atroviride]
          Length = 629

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 171/492 (34%), Positives = 262/492 (53%), Gaps = 20/492 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR +DN++L  A      +   +I V+I +P+ +  H  S  +  F+  +L  
Sbjct: 138 VHWFKMDLRHSDNRSLALASAKAKEAGVPLICVYIISPQDFEAHLTSPVRVDFMLRTLSV 197

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKR 126
           ++  L+   I           D    +     +     LF N +YE++E+RR+ +++ + 
Sbjct: 198 LKDDLAALDIPLHVETVDKRKDIPRRILELMEEWGSNHLFANMEYEVDELRRETRMIRQF 257

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            ++ +  +   D+ ++PPG + +   + Y VYTP+ +A + ++ +               
Sbjct: 258 AENNMSFEVVHDTCVVPPGELHSGTGKQYAVYTPWYRAWMAHIHENLDLLEIYDRPEKNP 317

Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             T       FD P               +    ++P GE  A+  L KFC E V  Y +
Sbjct: 318 GATRRTFKTLFDCPIPDAPKNKQLNDEEKKRFHGLWPCGEHEAMSRLEKFCDEAVTSYHD 377

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
           +R+IP   GTS LS +L+ G +S R C    ++      L     G   W++E+ WR+FY
Sbjct: 378 RRNIPGDNGTSCLSVHLASGTISSRTCVRTARDRNKTKRLDGGHQGIHVWISEVAWRDFY 437

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    IEW+ +    +AW +G TGFPI+DAAMRQLN +G+MHN
Sbjct: 438 KHVLVNWPYVCMNKPFKPEYANIEWSYNMDHFEAWCEGRTGFPIVDAAMRQLNHMGYMHN 497

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL KDLL+DWR+GE+YFM  L+DGD ASNNGGW ++AS G D  PYFR+FNP
Sbjct: 498 RCRMIVASFLSKDLLIDWRMGEKYFMEHLVDGDFASNNGGWGFSASVGVDPQPYFRVFNP 557

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHHT 470
            +Q ++FDP G +IR W+PEL  +  + IH P++           YP  IVDHK A    
Sbjct: 558 LLQSEKFDPNGEYIRKWIPELKALSDKEIHDPYNRGAGTKAKKQGYPKQIVDHKGARERA 617

Query: 471 LNQYYAAKKQSL 482
           L+ Y    ++ +
Sbjct: 618 LSAYKDGLERGI 629


>gi|121730224|ref|ZP_01682610.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae V52]
 gi|147672153|ref|YP_001214921.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae O395]
 gi|262168985|ref|ZP_06036679.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
 gi|121628028|gb|EAX60578.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae V52]
 gi|146314536|gb|ABQ19076.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio cholerae O395]
 gi|227014689|gb|ACP10898.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
 gi|262022684|gb|EEY41391.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
          Length = 469

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 210/474 (44%), Positives = 287/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +          ++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAKQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S FDD  +LPPGS+     + +KV+TPF++A +       +      A+     
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWNVPS 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    + FDYP     P +    +     LR+FC+E+V  Y + RD PA +GTS 
Sbjct: 180 ALAELVWHPEQAFDYPRIDSTP-WAADFETVRAQLREFCRERVQDYHQARDFPAQEGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL  E    + +   GA +WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQAWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWAYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|260776993|ref|ZP_05885887.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606659|gb|EEX32933.1| deoxyribodipyrimidine photolyase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 471

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 217/476 (45%), Positives = 282/476 (59%), Gaps = 13/476 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWLR DLRI DN AL  A    +  V+ ++ ATPE W +HG++  Q+  IY  L  +
Sbjct: 1   MNLVWLRRDLRIEDNSALVNAVETGE-PVVCIYTATPETWHEHGLAPIQADLIYRRLQGL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L    I   Y +   + +S + +          ++  N++YE+NE RRD  LE  L 
Sbjct: 60  KQDLESLRIPLLYEEVDTYTESAKRVAEIATLLSANRVLVNKEYEVNEQRRDATLEMCLN 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIRL 184
              I  KS DD  +  PGSI+N     +KV+TPF+KA +  L +      +     + RL
Sbjct: 120 DTAIQVKSSDDKCIFAPGSIVNKQGSYFKVFTPFKKAYLAELGECSFQVRKPQVACSSRL 179

Query: 185 TGPVTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              ++         F YP +  D  F    Q+ +  LR F  + V  Y   RD PAI GT
Sbjct: 180 PEHLSSLLFADDVTFSYPREPSDQ-FAADTQSIIQTLRDFDSQDVEGYASNRDFPAIAGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLSPYL+IG LS RQC  RL       L +   G   W +ELIWREFY+HL+ F   + 
Sbjct: 239 SQLSPYLAIGALSVRQCMARLMFGQAPPLSQ---GREVWQSELIWREFYQHLIYFEAKLS 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G+ F+ W +++ W  +   ++AWKQG TGFPI+DAAM+QLN  GWMHNRLRMI ASFLV
Sbjct: 296 KGRSFVDWGDRLVWKNEPQYIEAWKQGETGFPIVDAAMKQLNQTGWMHNRLRMIVASFLV 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL VDWR+GE YF+++L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG+RFDPQG
Sbjct: 356 KDLHVDWRVGERYFINKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPITQGERFDPQG 415

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            F+R WLPEL  VP +Y+H P  W      SL+YP PIVDHK     TL  Y  AK
Sbjct: 416 EFVRQWLPELAQVPDKYLHQPWKW--SGVRSLSYPPPIVDHKVEREVTLRLYKEAK 469


>gi|262173169|ref|ZP_06040846.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
 gi|261890527|gb|EEY36514.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
          Length = 469

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 211/474 (44%), Positives = 285/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA  + +  V AV++ATP+QW QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVATPQQWLQHHLAPIQADFIWRRLAAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F ++   ++         ++  NR YE++E +RD   E+ L 
Sbjct: 60  QQELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S FDD  +LPPGS+     + +KV+TPF++A +       +      A      
Sbjct: 120 EQGISWSAFDDKCILPPGSLRTKQGEFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWNVPN 179

Query: 188 VTP---SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                  N  + F+YP +     +P+  +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 EFSHLVWNTDQMFNYP-RVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSI 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGALSARQCVARLYRESE--MSALSEGAQVWLSELIWREFYQHLVAIEPNISKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  DS   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP P+VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPPPLVDHKQEREVTLRLYKTAK 468


>gi|269962802|ref|ZP_06177143.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832492|gb|EEZ86610.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 471

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 211/477 (44%), Positives = 288/477 (60%), Gaps = 12/477 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  D+ AL AA  +S   V+A F+ATPEQW++H ++  Q+  I   L  +
Sbjct: 1   MILVWFRRDLRTLDHTALKAAL-DSGQPVVAGFVATPEQWQEHHMAPMQADLIARRLTHL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L++  +   Y +   F D  E +  + L   V  +  N  YE+NE   D+ + + L 
Sbjct: 60  EEELTELNVPLLYKEVPKFSDVTEVIKGWALSLNVESVMANIHYEVNEQALDREVSEVLA 119

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  V  ++F D  +  P ++LN   + +KV+TPF++A +    Q  + S P P   L+  
Sbjct: 120 NSEVTFEAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLLKF-QMPMVSKPQPQAELSKE 178

Query: 188 V--TPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           V           D PF   +     +     + +  LR+F +E+   Y  +RD+PA+ GT
Sbjct: 179 VLQAVEADRYHADVPFSYPRESSERWHASTTDIVQQLREFARERSDAYQAERDLPAVDGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLSPYL+IG LSPRQC  RL  E    L     G  +WL+E+IWREFY+HL+ F P + 
Sbjct: 239 SQLSPYLAIGALSPRQCIARLYAENP--LPDLTEGKATWLSEIIWREFYQHLLVFEPKLV 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            GK FIPW EKI+W+ D    + WK G TG+PI+DAAMRQLN  GWMHNRLRM+ ASFL 
Sbjct: 297 RGKGFIPWEEKIQWSYDEQAFERWKTGTTGYPIVDAAMRQLNMTGWMHNRLRMVVASFLT 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G
Sbjct: 357 KDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDSDG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           TF+RHW+PE+  VP ++IH P  W   N L  +Y  P+VDHK     TL  +  AK+
Sbjct: 417 TFVRHWVPEIKEVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471


>gi|15616910|ref|NP_240123.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11133758|sp|P57386|PHR_BUCAI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|25291445|pir||A84965 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [imported] -
           Buchnera sp. (strain APS)
 gi|10038974|dbj|BAB13009.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 483

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 205/473 (43%), Positives = 295/473 (62%), Gaps = 2/473 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W RNDLR+ DN AL+ AC N   KVI++FI+TP+QW    +S ++  F+Y  L+
Sbjct: 1   MQKNLIWFRNDLRVYDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLI 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L +  I+  YH+ ++F +SIE+L  +C + +V  LFYN +Y INE  RD L++K+
Sbjct: 61  SLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKK 120

Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  +  + K F D++L     I N   + YKV+T F+K +IQNL     +  PVP+ R +
Sbjct: 121 LSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKS 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       +         FP+GE+ A++ L+ FC  K   Y  +RD P +  TS L
Sbjct: 181 DRDIFLTSISLKNVNLNFNKNFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLDATSML 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYLS G++S R C   L +    L +        W ++++WREFY HL+  +P +   +
Sbjct: 241 SPYLSAGIISSRYCLKVLLKTKNSLPLNVLL-TSPWFDQILWREFYYHLLIGFPKISRSE 299

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             + W ++I W  +     AWK+G TGFPIIDA MRQLN +GWMHNRLRMIT+SFLVK+L
Sbjct: 300 SLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNL 359

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++WR GEE+F+S L+DGDLA NNGGWQW+AS G DSVPY RIFNP  Q K FD  G FI
Sbjct: 360 LINWREGEEHFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNPLHQSKTFDESGNFI 419

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL NVP  +IH PH W  + +  ++YP PI+++ ++   +L+ +  A+
Sbjct: 420 KKFIPELKNVPNHHIHQPHEWSKQKNFKIDYPNPIINYSESRKTSLSLFKQAR 472


>gi|330811712|ref|YP_004356174.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379820|gb|AEA71170.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 483

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 187/481 (38%), Positives = 274/481 (56%), Gaps = 9/481 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR+ DN     A   +    +AV++ +PEQWR H  +  +  F   +L  +
Sbjct: 1   MQLIWLRSDLRLHDNT--ALAAAAAQGPCVAVYLTSPEQWRAHDDAPCKIDFWLRNLGAL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
             +L++  I       +++  + + L   C +  V  +  N +Y +NE RRD  + + L 
Sbjct: 59  SATLAELNIPLLIRAAAHWHQAPQVLLKLCRELNVGAVHVNEEYGLNETRRDAEVARVLN 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   S  D +L  PGS+L      ++V++ FRK     L  +    +  PA +    
Sbjct: 119 DQGVEFHSHLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHFSLPSLVATPARQALTG 178

Query: 188 VTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P   D    P +A+  ++P GE  A   L  F  + +  Y  +RD PA  GTSQ
Sbjct: 179 IARDPVPTQVDGFAPPSEALRALWPAGETEARRRLDTFVDQHIDDYQGERDYPARPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL  GV+SPRQC +   +          +GA +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSAYLVAGVVSPRQCLHAALQANQGEFESGSAGAVTWINELLWREFYKHILVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE + W K    L+AWKQ  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALAWRKAPAELEAWKQARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG DS P+FRIFNP  Q ++FD +G F
Sbjct: 359 LLIDWREGERFFMQHLIDGDLAANNGGWQWSASTGTDSAPWFRIFNPLSQSEKFDREGLF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA--AKKQSL 482
           I+ WLPELN++  Q +H+P++       +++YP PIVD +++    L  +    A++ + 
Sbjct: 419 IKRWLPELNDLDKQQVHSPNTQGGLFG-AVDYPAPIVDLRQSRARALAAFRNLPARQDAT 477

Query: 483 L 483
           +
Sbjct: 478 V 478


>gi|332853990|ref|ZP_08435106.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150]
 gi|332869730|ref|ZP_08438918.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113]
 gi|332728272|gb|EGJ59654.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013150]
 gi|332732632|gb|EGJ63865.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii 6013113]
          Length = 480

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 192/477 (40%), Positives = 273/477 (57%), Gaps = 15/477 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  +Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L +
Sbjct: 64  KELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187
           H      F D  + P  SI N + Q Y+V++ F+KA    L  + L    PVP  +   P
Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLPQCYPVPNKQNEVP 183

Query: 188 --------VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   +    I + F          ++P+GEQ AL  L +F ++ V +Y  +RD P 
Sbjct: 184 LDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYALEQLDQFIEQSVCHYKVERDFPH 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           IQ TS+LSPYL+IG+LS RQC   L             G  +WL+EL+WREFY+H++  +
Sbjct: 244 IQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDF 303

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   ++KI+WN +   L AW+ G TG PI+DA MRQL   GWMHNR+RMITA
Sbjct: 304 PHVSKHIPFKKDSQKIKWNHNPEHLTAWQTGQTGIPIVDAGMRQLLQTGWMHNRVRMITA 363

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q K+F
Sbjct: 364 MFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKF 423

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           D +G +IR W+ EL ++  + IH P+S   K+DL LNY  PIVD K+     +  + 
Sbjct: 424 DLEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKPIVDLKETRLKAIETFK 478


>gi|327485291|gb|AEA79697.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3894-4]
          Length = 469

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 210/474 (44%), Positives = 285/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +          ++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNAIQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S FDD  +LPPGS+     + +KV+TPF++A +       +      A+     
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 ALAELVWHPEQTFDYPRVDSTP-WAADFETVRAQLRGFCRERVQDYHQARDFPAREGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|313497105|gb|ADR58471.1| PhrB [Pseudomonas putida BIRD-1]
          Length = 480

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 189/476 (39%), Positives = 269/476 (56%), Gaps = 7/476 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL A+        IA+++ +P QW+ H  +  +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSASTERGQT--IALWLVSPGQWQAHDDADCKVDFWLRNLHDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL +  I         +D + + +   C Q +V  + +N +Y INE RRD      L+
Sbjct: 59  RQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRALLE 118

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIRL 184
              +   S+ D +   PG++L  +   ++V++ F+K  +++L ++     R +   A   
Sbjct: 119 KSAIQAHSYLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAPLN 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            G          F     A+   +P GE  A   L +F  + +  Y   RD+PA  GTSQ
Sbjct: 179 IGSDPIPQHVEGFGKTTHALRDHWPAGEAEAQSRLSRFLDDTIDDYHHLRDLPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GV+SPRQC +              +G  +W+NEL+WREFY+H+++ YP V   
Sbjct: 239 LSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSGYPQVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W      L+AW+QG TGFPIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDPQG F
Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGQF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IRHW+PEL  +  + IH P    D    + +Y  PIVD   +    L  +    ++
Sbjct: 419 IRHWVPELQELDEKAIHQPIKPTDLFGNT-SYLSPIVDLSSSRQRALEAFKGLARR 473


>gi|254414764|ref|ZP_05028529.1| deoxyribodipyrimidine photolyase family [Microcoleus chthonoplastes
           PCC 7420]
 gi|196178612|gb|EDX73611.1| deoxyribodipyrimidine photolyase family [Microcoleus chthonoplastes
           PCC 7420]
          Length = 475

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 176/477 (36%), Positives = 246/477 (51%), Gaps = 17/477 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AAC  S  KVI VF   P+   +  I+  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNIGLAAACQKSQ-KVIGVFCLDPDILERDDIAPARVTYMMGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             ++ G            +  + + +         + +NR  E     RD+ ++  L+ +
Sbjct: 65  RYAEAGSQLLILH----QNPSQGIPTLADTLNAKAVVWNRDVEPYARTRDRTVQDALEEK 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PAIR 183
            I  +SF D +L  PG I  ++   YKVYTPF K        A   SL            
Sbjct: 121 GIAVESFWDQLLHAPGEIRTNSGNPYKVYTPFWKNWKDQAKAAPAESLKNGEGLTETEQD 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +   V    +P   +  F   + +    GE+ A   L +FC   +  Y  QR++PAI GT
Sbjct: 181 VVKKVGVMELPTAKELGFTWDNSLMLEPGEKAAKQRLEEFCDRAIDDYQHQRNLPAIDGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSV 301
           S+LS  L  G +  R  W   +             G  +W  EL WREFY+H + F+P +
Sbjct: 241 SRLSAALKFGAIGIRTVWQATQTAIERSRSDETRDGIQTWQQELAWREFYQHALYFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+    E   W+ +  L QAW +G TG+PI+DAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 ASG-PYRDTFENFPWDNNQTLFQAWCEGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE YFM +L DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q +++DP 
Sbjct: 360 TKDLIINWQWGETYFMQKLYDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKYDPD 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           G +IR WLPEL+++ T+ +       D+   S  YP PIVDHKK       +Y   K
Sbjct: 419 GEYIRQWLPELSSLDTKDLVTGKISSDECS-SCGYPEPIVDHKKRQKEFKQRYQQQK 474


>gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
           Alcoy]
 gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 471

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/480 (34%), Positives = 253/480 (52%), Gaps = 19/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  +I ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHET-IIPLYIYDD---KCSVLGQAQAWWLHHSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     + S     +E +     Q  +  +++NR YE   + RDK ++  
Sbjct: 57  ALGKSLNQQGLSLVLRKGSP----LEIILELVTQYGLESVYWNRCYEPQVIARDKKIKLA 112

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  + I   SF+ ++L  P +I N     +KV+TP+ K   Q L         +      
Sbjct: 113 LGEKGIKVHSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQIL--NIPSPFMLTKRPRG 170

Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +T  ++ ++   P           +  GE+ A   L +F    +  Y  +RD PA   
Sbjct: 171 IEITSDDLGKWKLLPAINWAARFSEYWTPGEEGAQKKLNEFVVHHLSGYKRERDFPAKNA 230

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G +SP     R  E          +    +L+EL WREF  +L+  +P +
Sbjct: 231 TSRLSPHLHFGEISPW-VILRALELAKLEQTCDLASLEHFLSELGWREFSVYLLYHFPKL 289

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                F    +   W  D  LL  W++G TG+PIIDA MR+L   G+MHNR+RMI ASFL
Sbjct: 290 DCEN-FRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFL 348

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDLL+DWR G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP +Q ++FDP 
Sbjct: 349 TKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPD 408

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479
           G +IR W+PEL  + +Q IH P +  + + +     YP PI+DH++A    L+ Y   KK
Sbjct: 409 GVYIRQWIPELAQLNSQSIHQPWTDANASSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468


>gi|258624237|ref|ZP_05719186.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio mimicus VM603]
 gi|258583388|gb|EEW08188.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
           dimer-specific [Vibrio mimicus VM603]
          Length = 469

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 209/474 (44%), Positives = 284/474 (59%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA  + +  V AV++A P+QW QH ++  Q+ FI+  L  +
Sbjct: 1   MKLVWFRRDLRSFDNTALTAAIESGET-VAAVYVAAPQQWHQHHLAPIQADFIWRRLAAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F ++   ++         ++  NR YE++E +RD   E+ L 
Sbjct: 60  QQELAAINVPLFYQQVADFREAATAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLA 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S FDD  +LPPGS+     + +KV+TPF++A +       +      A      
Sbjct: 120 EQGISWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSLFQPPVIPRNHSAAPWDVPN 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    + F+YP +     +P+  +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 EFSHLVWHTDQMFNYP-RVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGTSV 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG LS RQC  RL  E    +     GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGALSARQCVARLYRE--SAMSALSEGAQVWLSELIWREFYQHLVAIEPNISKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  DS   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP P+VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPPPLVDHKQEREVTLRLYKTAK 468


>gi|26987475|ref|NP_742900.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida KT2440]
 gi|24982139|gb|AAN66364.1|AE016264_8 deoxyribodipyrimidine photolyase [Pseudomonas putida KT2440]
          Length = 480

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 190/476 (39%), Positives = 267/476 (56%), Gaps = 7/476 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL A+        IA+++ +P QW+ H  +  +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSASTERG--PTIALWLVSPGQWQAHDDADCKVDFWLRNLHDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL +  I         +D + + +   C Q +V  + +N +Y INE RRD      L+
Sbjct: 59  RQSLEKLNIPLLIRTIDTWDQAPQAVLDICRQHQVQSVHWNEEYGINEQRRDDATRAMLE 118

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIRL 184
              +   S  D +   PG++L  +   ++V++ F+K  +++L ++     R +   A   
Sbjct: 119 KSAIQAHSHLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAPLN 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            G          F     A+   +P GE  A   L +F  E +  Y   RD+PA  GTSQ
Sbjct: 179 IGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYHHLRDLPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GV+SPRQC +              +G  +W+NEL+WREFY+H+++ YP V   
Sbjct: 239 LSPYLAAGVISPRQCLHGALAGNRGEFDSGSTGVQTWINELLWREFYKHILSGYPQVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W      L AW+QG TGFPIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRAQTEALPWRDAPADLAAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDPQG F
Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGRF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IRHW+PEL  +  + IH P    D    + +Y  PIVD   +    L  +    ++
Sbjct: 419 IRHWVPELQELDEKAIHQPIKSTDLFGNT-SYLSPIVDLSSSRQRALEAFKGLPRR 473


>gi|289208005|ref|YP_003460071.1| deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix]
 gi|288943636|gb|ADC71335.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix]
          Length = 469

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 172/479 (35%), Positives = 248/479 (51%), Gaps = 19/479 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              LVWLR DLR+ D  AL+AA     A VI VFI  P++  Q    A  + +++ SL  
Sbjct: 3   GPTLVWLRQDLRLADQPALHAAVERGGA-VIPVFIHAPDEDLQWPPGAASNWWLHHSLQS 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + ++L++ G             S++ L     +   T +++NR YE   V RD+ ++  L
Sbjct: 62  LNEALNKAGSPLVVRAGP----SLDTLRELVAETGATAVYWNRVYEPARVLRDQGIKAGL 117

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   +  +SF+ ++L+ P  +       Y+V+TPF +A +Q  ++ +    P        
Sbjct: 118 RADGLDVRSFNAALLIEPWDVETGQGGPYRVFTPFWRACLQRGIEQNPLPAPSRLPAPGK 177

Query: 187 PVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           P     +      P       +   +  GE+ A   L +F ++ +  Y + RD P   GT
Sbjct: 178 PPRSLMLDDLELLPPIDWAGGLRATWTPGERGARDRLERFLEQAIAGYADSRDRPDQDGT 237

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP+L  G +SPRQ    L++  V L  K   G  S++ EL WR+F  H++  +P   
Sbjct: 238 SRLSPHLHFGEVSPRQVLRALRDAGVSLDHK---GPESFVRELGWRDFAHHVLYHFPHTT 294

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +P  P  E   W +    L AW+QG TG PI+DAAMRQL   GWMHNRLRM+  SFL 
Sbjct: 295 E-QPLNPRFEDFPWRESEADLAAWQQGRTGIPIVDAAMRQLWETGWMHNRLRMVVGSFLT 353

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+L + W  G  +F   L+D DLASN  GWQWA   G D+ PYFRIFNP  QG+++DP G
Sbjct: 354 KNLRLHWGHGARWFWDTLVDADLASNTLGWQWAGGCGADAAPYFRIFNPQRQGEQYDPDG 413

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            F+R +LP L    T+YIHAP         +  YP PIVD K +    L  + A KK S
Sbjct: 414 RFVRSFLPVLKKTETRYIHAP-----GAGGTPGYPDPIVDLKASRQAALEAFEAIKKTS 467


>gi|297579803|ref|ZP_06941730.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
 gi|297535449|gb|EFH74283.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
          Length = 469

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 211/474 (44%), Positives = 286/474 (60%), Gaps = 10/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQVAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I  S FDD  +LPPGS+     + +KV+TPF++A +       +      A+     
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTLFQPPVIGKNRPAALWDVPS 179

Query: 188 VTPSNIP---RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +    + FDYP     P +    +     LR FC+E+V  Y + RD PA +GTS 
Sbjct: 180 ALAELVWHPEQTFDYPRIDSTP-WAADFETVRAQLRDFCRERVQDYHQARDFPAREGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IGVLS RQC  RL  E    + +   GA  WL+ELIWREFY+HL+A  P++   
Sbjct: 239 LSPYLAIGVLSARQCVARLYHE--SSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSKS 296

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W  ++EW  D+   Q W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 297 RDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 356

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 357 LHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGDF 416

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 417 IRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 468


>gi|302404190|ref|XP_002999933.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum
           VaMs.102]
 gi|261361435|gb|EEY23863.1| deoxyribodipyrimidine photo-lyase [Verticillium albo-atrum
           VaMs.102]
          Length = 589

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 174/501 (34%), Positives = 263/501 (52%), Gaps = 28/501 (5%)

Query: 3   ATTAMS--------VHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQH 51
           A T+M+          + W + DLR++DN +L  A     ++   +IA++I +P+ +  H
Sbjct: 81  ADTSMTRKGVKVGAAVVHWFKMDLRLSDNTSLRLASERAKDAGVPLIAMYIISPQDFEAH 140

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
             +  +  F   +L  ++  L++  I              + +     +   T LF N +
Sbjct: 141 LTAPIRVDFTLRTLEILKHDLAKLDIPLHIETVEKRRQISDRIVELMGEWGATHLFANME 200

Query: 112 YEINEVRRD-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
           YE++E+RR+ KL+       +  ++  D+ ++PPG +     + Y VYTP+ ++ ++++ 
Sbjct: 201 YEVDELRREAKLVRTFADKGMSFEAVHDTCVVPPGQLQTGTGKQYAVYTPWYRSWMRHVH 260

Query: 171 QAD--------LRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNAL 216
           +              P  A    G +  S IP             +    +FP GE  A 
Sbjct: 261 ENPDRLELFDHPNKNPSSAKERFGNLFASEIPEEVPNKTLGAEEKKRFRALFPAGEHAAR 320

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPK 275
             L KFC   +  Y ++R+IP   GTS LS +L+ G +S R C    ++      L    
Sbjct: 321 ERLDKFCDGSISSYADRRNIPGDNGTSSLSMHLASGTISSRTCVRTARDRNKTKKLDGGN 380

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
            G  +W++E+ WR+FY+H++  +P VCM KPF P    IEW+ +    +AW +G TGFPI
Sbjct: 381 GGIQTWISEVAWRDFYKHVLVHWPYVCMNKPFKPEYANIEWSYEKDDFKAWCEGKTGFPI 440

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DAAMRQ+  +GWMHNR RMI ASFL KDLL+DWR+GE +FM  L+DGD ASNNGGW ++
Sbjct: 441 VDAAMRQMIHVGWMHNRCRMIVASFLCKDLLIDWRMGERFFMEHLVDGDFASNNGGWGFS 500

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SL 454
           AS G D  PYFRIFNP +Q ++FDP G +IR W+PEL  V  + IH P+           
Sbjct: 501 ASVGVDPQPYFRIFNPLLQSEKFDPDGEYIRKWVPELAGVKGKAIHDPYGRGAGPQAKKK 560

Query: 455 NYPLPIVDHKKACHHTLNQYY 475
            YP PIV HK      L +Y 
Sbjct: 561 GYPEPIVAHKDVRERALTEYK 581


>gi|254786801|ref|YP_003074230.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
 gi|237686103|gb|ACR13367.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
          Length = 465

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 196/469 (41%), Positives = 269/469 (57%), Gaps = 5/469 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L+W R DLR+ DN AL A+         AV+      W +H +S  +   I   L ++
Sbjct: 1   MNLMWFRADLRVADNPALCASMQAG--PTAAVYTLCEATWSEHRLSPAKISLICRQLEKL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +L+   +      CSNF      L S+  +  ++ +++N ++EINE    K +   LQ
Sbjct: 59  ESALAALHVPLIIIPCSNFKRVPGELKSFAAKHNISAVYFNHEFEINERLLSKRVIAELQ 118

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   SF+D   + PG +   +   YKV+TPF+K  +           P P  +   P+
Sbjct: 119 PHIDTWSFNDQCAIAPGKLKTGSDDWYKVFTPFKKRYLAEFSSMARAVYPTPKAQKKIPI 178

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           T S  P            ++P GE  A   L +F K+ +  Y E RD PA+ GTS LSPY
Sbjct: 179 TSSIAPLQQVQFESCWQNLWPAGEDEAHRRLHRFGKDGMSRYHEDRDFPAVDGTSTLSPY 238

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L++G +S RQC +   ++      +   GA +WL+EL+WR+FYRHL+  YP +C  K F 
Sbjct: 239 LAVGAISTRQCMDAAIQQGGMENDQSTQGAQTWLSELVWRDFYRHLLYGYPDLCKFKAFQ 298

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
             TE++ W  DS LL AW++G TGFPI+DAAM+QL   GWMHNRLRMITA FL K L VD
Sbjct: 299 QNTERLPWRHDSRLLTAWQEGRTGFPIVDAAMKQLVQTGWMHNRLRMITAMFLTKHLFVD 358

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+GE++FM  L+DGDLASNNGGWQW+ASTG D+ PYFRIFNPT Q +RFDP G FIRH+
Sbjct: 359 WRLGEDFFMQHLVDGDLASNNGGWQWSASTGVDAAPYFRIFNPTRQSERFDPNGEFIRHY 418

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           LPEL N+  + IH+P     +   S  YP PIVDH  A   T   +   
Sbjct: 419 LPELKNLSNKAIHSPSVIEAE---SCGYPKPIVDHSTAVKQTKAWFKEL 464


>gi|88857379|ref|ZP_01132022.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           tunicata D2]
 gi|88820576|gb|EAR30388.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           tunicata D2]
          Length = 475

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 189/468 (40%), Positives = 278/468 (59%), Gaps = 6/468 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L+WLR DLRI DN AL AA  +   +  A+FIATPEQW+QH ++  Q  FI   L  +
Sbjct: 1   MNLMWLRRDLRIDDNPALIAALQSGPTQ--ALFIATPEQWQQHDMAPIQVDFIERHLNLL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L++ GI        N+      L  +C  Q+++++F N++ E+NE  RD+ +   L 
Sbjct: 59  AEQLAKYGIPLTVLTVPNYASCTIALKEFCHTQQISQIFANQEVELNECIRDRQI---LA 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    ++  V++P G++      M+ V+TPFR A ++ L Q  +++   P+  LT   
Sbjct: 116 AGLNLTLYEADVIVPKGTVKTGKGDMFHVFTPFRNAWVKQLQQHSIKTSSHPSEVLTHYQ 175

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           +        +   +     +P+      H++ +F + K   Y + RD PA++GTS +SPY
Sbjct: 176 SIRAEKIVLE-ATKKSSEKWPLVSDIKKHVMPEFLQTKHADYKQYRDFPALKGTSGVSPY 234

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+IG LS +   +++ +    +L   K+  F WLNEL WR+FY+HL+  YP++  G  F 
Sbjct: 235 LAIGALSSKMLASQVLQHVPFILDNAKADIFCWLNELAWRDFYKHLLFAYPNLIKGITFS 294

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                + W   +    AW +G TG+P++DAAMRQL   GWMHNRLRM+ ASFL K LLVD
Sbjct: 295 EKYSNLNWPNSNEYFIAWCEGRTGYPLVDAAMRQLRQTGWMHNRLRMVVASFLTKHLLVD 354

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+GE++FM  L+DGD ++NNGGWQWAA TG D+ PYFRIFNP  Q ++FDP G+FIR +
Sbjct: 355 WRLGEQFFMQHLIDGDFSANNGGWQWAAGTGCDAQPYFRIFNPITQSEKFDPDGSFIRKY 414

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           LPEL+NVP +YIH PHS+L     S  Y   IV+H +A    L  Y  
Sbjct: 415 LPELSNVPVKYIHLPHSYLAATGQSECYWPAIVEHSQARQIALAFYKQ 462


>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
 gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
          Length = 475

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 174/477 (36%), Positives = 250/477 (52%), Gaps = 17/477 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L  A   S   V+ +F   P+   +  ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNIGLSTARQRS-PHVVGIFCLDPDILEKDDVAPARVTYLIGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  Q G      +        + +       +   +F+N   E     RD+ +   LQ +
Sbjct: 65  NYQQAGSQLLILKGKPS----QAIPILAESLKAQAVFWNLDVEPYAQTRDEQVSNALQEK 120

Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------VPAIR 183
            I    F D +L  PG IL  + + YKVYTPF +   Q L ++ +++L          I 
Sbjct: 121 GIATEKFWDQLLHAPGKILTLSKEPYKVYTPFWRNWSQELKKSPVQALEDVQGLNQQQIS 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           L       ++P   D  +   +P+    GE  A   L++FCK  +  Y EQRD+PAI GT
Sbjct: 181 LAKEAGIIDLPTAKDLGYLWENPLMLNPGETAAKERLQEFCKTSINNYQEQRDLPAIDGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301
           S+LS  L  G +  R  W    E + +      +    +W  EL WREFY+H M F+P +
Sbjct: 241 SRLSAALKFGAIGIRTVWQATLELYENSRSDEVRESIQTWQQELAWREFYQHCMYFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+     +  W+ D  L QAW +G TG+PI+DAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 ADG-PYRKEFREFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D  P  RIFNP  Q +++DP 
Sbjct: 360 TKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQKYDPD 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           G +IR W+PEL ++ T+Y+               YP PIVDHKK       +Y   K
Sbjct: 419 GEYIRQWIPELKSLDTEYLVT-GKIPTSELRQCGYPEPIVDHKKRQAEFKQRYKEVK 474


>gi|119473269|ref|ZP_01614930.1| putative deoxyribodipyrimidine photolyase [Alteromonadales
           bacterium TW-7]
 gi|119444513|gb|EAW25832.1| putative deoxyribodipyrimidine photolyase [Alteromonadales
           bacterium TW-7]
          Length = 464

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 193/468 (41%), Positives = 270/468 (57%), Gaps = 9/468 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L W R DLR+  N+AL  A +N      A+F    +QW+QH  +  Q   +   +  +Q
Sbjct: 3   TLFWFRRDLRLFSNEALIEALNNGAKH--AIFFVCEKQWQQHQAAPIQIDLLKRRVTYLQ 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L+  GI        +F D    L S+C    +  +  N +YE+NEV RDK +  +   
Sbjct: 61  EQLANFGITLNVINAPSFSDCESELLSFCETHDIQHIIANTEYELNEVNRDKAVLAQCDK 120

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R +    ++  ++ P GSI N + +MYKV+TPF++A ++            P  +    +
Sbjct: 121 RSITFTLYEGDLIAPVGSIKNQSNEMYKVFTPFKRAWLKQYQDTHFSLAQWPQEQNPIKI 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             S                +P+ ++  L ++  F  +K+  Y +QRDIP+I+GTS LSPY
Sbjct: 181 EKSQH-----LESDGSSDKWPVDDETLLSVVDNFICDKLTSYDDQRDIPSIKGTSGLSPY 235

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L++G++SP+Q    +++ + D+L   KS  F+W+NELIWREFYRHL+A YP +  G+ F 
Sbjct: 236 LALGIVSPKQLLINIQQRYPDILTTSKSKTFTWVNELIWREFYRHLIAEYPKLSRGENFN 295

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                +EW K      AW +G TG+P++DAAM QL   GWMHNRLRM+ ASFL K LL+D
Sbjct: 296 EKYNPVEWRKSEKEFNAWCEGRTGYPLVDAAMLQLKQTGWMHNRLRMVVASFLTKHLLID 355

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE +FM  L+DGDLASNNGGWQWAASTG D+ PYFRIFNP  Q +RFDP G FIR +
Sbjct: 356 WREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPITQSERFDPTGKFIRKY 415

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475
           LPEL NVP ++IH PH++L         Y   IVDHK A    L  + 
Sbjct: 416 LPELENVPDKHIHFPHTYLAATGKGSECYWPAIVDHKAARERALAAFK 463


>gi|218677191|ref|YP_002396010.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
 gi|218325459|emb|CAV27611.1| Deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
          Length = 486

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 200/488 (40%), Positives = 293/488 (60%), Gaps = 28/488 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W+R DLRI DN AL +A  N  +  IAVFI+TP+QW+QH ++  ++ FIY  L Q + 
Sbjct: 4   ILWIRRDLRIHDNPALVSAVENGAS--IAVFISTPQQWQQHHLAPIKADFIYRHLKQFES 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ GI   + + ++F+D    L + C Q   T ++ N + E++E  RDK L       
Sbjct: 62  QLAEFGITLLHLKATDFNDQASQLINLCKQVDATCVYANSEPEVDEQLRDKRLIAT---G 118

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---------- 180
           +  K  D   +LP GS+LN   +M+KV+TPF+ A ++ +    +     P          
Sbjct: 119 IKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICSHAPVHSTGSAQAG 178

Query: 181 -----AIRLTGPVTPSNIPR-------FFDYPFQAIDP-MFPIGEQNALHILRKFCKEKV 227
                +++   P  P+ + +        +D+ F   D   +P+ +     ++  F   KV
Sbjct: 179 SSETDSLQNLSPQNPTPLNQSLSGFSGEYDFDFPRTDSERWPLSQDVLESVIPNFLANKV 238

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y   RDIP+I+GTS LSPYL+IG +SPR    +L ++  DLL   +  AFSWLNELIW
Sbjct: 239 NDYSRLRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIW 298

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+FY+HLM  +P +  G  F      ++W  D+   +AW +G TG+P++DAAMRQL   G
Sbjct: 299 RDFYKHLMFHHPILVKGANFQQKYNGLDWYHDNPSFKAWCEGKTGYPLVDAAMRQLVETG 358

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNRLRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFR
Sbjct: 359 WMHNRLRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFR 418

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467
           IFNP  Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN +   Y  PIV+HK+A 
Sbjct: 419 IFNPITQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNGIDSEYWQPIVEHKEAR 478

Query: 468 HHTLNQYY 475
              L  + 
Sbjct: 479 LRALAFFK 486


>gi|148546013|ref|YP_001266115.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida F1]
 gi|148510071|gb|ABQ76931.1| Deoxyribodipyrimidine photo-lyase type I [Pseudomonas putida F1]
          Length = 475

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 192/476 (40%), Positives = 269/476 (56%), Gaps = 7/476 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL A+        IA+++ +P QW+ H  +A +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSASTERG--PTIALWLVSPGQWQAHDDAACKVDFWLRNLHDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL +  I         +D + + +   C Q +V  + +N +Y INE RRD      L+
Sbjct: 59  RQSLEKLNIPLLIRTIDTWDQAPQAVLDVCRQHQVQSVHWNEEYGINEQRRDDATRALLE 118

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIRL 184
              +   S+ D +   PG++L  +   ++V++ F+K  +++L ++     R +   A   
Sbjct: 119 KSAIQAHSYLDQLFFRPGTVLTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVKRQAPLN 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            G          F     A+   +P GE  A   L +F  E +  Y   RD+PA  GTSQ
Sbjct: 179 IGSDPIPQHVEGFGKTTPALRDHWPAGEAEAQSRLSRFLDETIDDYQHLRDLPAKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GV+SPRQC +               G  +W+NEL+WREFY+H+++ YP V   
Sbjct: 239 LSPYLAAGVISPRQCLHGALASNRGEFDSGSMGVQTWINELLWREFYKHILSGYPQVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W      L+AW+QG TGFPIIDAAMRQL   GWMHNRLRMI A FL K+
Sbjct: 299 RAFRAQTEALPWRDAPADLEAWEQGRTGFPIIDAAMRQLLHTGWMHNRLRMIVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDPQG F
Sbjct: 359 LLIDWRKGERHFMRNLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGHF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IRHW+PEL  +  + IH P    D    + +Y  PIVD   +    L  +    ++
Sbjct: 419 IRHWVPELQALDEKAIHQPIKSTDLFGNT-SYLSPIVDLSSSRQRALEAFKGLPRR 473


>gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 471

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 168/478 (35%), Positives = 249/478 (52%), Gaps = 15/478 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  VI ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHYSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     + S      E +     Q  V  +++NR YE   + RDK ++  
Sbjct: 57  ALGKSLNQQGLSLVLRKGSP----QEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLA 112

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-VQADLRSLPVPAIRL 184
           L  R +  +SF+ ++L  P +I N     +KV+TP+ K   Q L + +       P    
Sbjct: 113 LVEREIKVQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIPSPFILTKRPRGIE 172

Query: 185 TGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                           + A     +  GE+ A   L +F    +  Y   RD PA   TS
Sbjct: 173 IASDDIGKWKLLPAINWAARFSEYWIPGEEGAQKKLDEFIVHHLSGYKRDRDFPAKNATS 232

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L  G +SP     R  E          +    +L+EL WREF  +L+  +P +  
Sbjct: 233 RLSPHLHFGEISPW-VILRALELAKLEHTCDLASVEHFLSELGWREFSVYLLYHFPKLDC 291

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    +   W  D  LL  W++G TG+PIIDA MR+L   G+MHNR+RMI ASFL K
Sbjct: 292 EN-FRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTK 350

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP +Q ++FDP G 
Sbjct: 351 DLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPILQSQKFDPDGV 410

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +IR W+PEL  + +Q IH P +  D + +     YP PI+DH++A    L+ Y   KK
Sbjct: 411 YIRQWIPELAQLNSQSIHQPWTDADASSIFLGKKYPKPIIDHQEARTKALSYYQQIKK 468


>gi|255950764|ref|XP_002566149.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593166|emb|CAP99543.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 581

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 174/491 (35%), Positives = 254/491 (51%), Gaps = 19/491 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           S  + W ++DLR+ D++ALYAA          +I +++ +PE W  H  S  +  F   +
Sbjct: 91  SAVVHWFKSDLRLHDSRALYAAYQFAKEHQVPLIGLYVVSPEDWTAHSTSPARVDFTLRT 150

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L +  I                +   C Q     L+ N +YE++E+RR+  L 
Sbjct: 151 LKRLQQDLGELDIPLYMETQDKRKTIPNRIVELCQQWGAKSLYANIEYEVDELRREAKLV 210

Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LR 175
           +      +      D+ ++ PG++ +   + Y VYTP+ ++ +  L +            
Sbjct: 211 RLCADNDINFTPSHDTCVVTPGALASQQGKQYSVYTPWYRSWLAFLKENPDYLEVSEEPG 270

Query: 176 SLPVPAIRLTGP------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
           S P  A +              N     D   +  + ++P GE  AL  L  F +EK   
Sbjct: 271 SNPGNARQQFKDFFDCNVPAAPNTHILLDEEQKRFEGLYPAGEHEALQRLDNFLEEKGKE 330

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y E R + + + TS LSPY + G LS R      K      + +   G  +W++EL WR+
Sbjct: 331 YEETRSMLSGESTSVLSPYFACGALSARTAVATAKRINKGHIDRYNPGYMTWISELAWRD 390

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FY+H++  +P +CM K F P    IEW  D    QAW  G TGFPI+DAAMRQL    WM
Sbjct: 391 FYKHVLVNWPFICMNKCFKPEHTNIEWEYDKDQFQAWCDGKTGFPIVDAAMRQLRHCAWM 450

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RM+ +SF  KDL++DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIF
Sbjct: 451 HNRTRMVVSSFFTKDLMLDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDPQPYFRIF 510

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACH 468
           NP  Q +RFDP+G +I+HWLPEL +V  + IH P++         N YP PIVDH ++  
Sbjct: 511 NPLRQSERFDPEGEYIQHWLPELRDVSGKAIHEPYARGAAEIAQKNGYPRPIVDHAESRD 570

Query: 469 HTLNQYYAAKK 479
             L ++  A K
Sbjct: 571 RALERFKKALK 581


>gi|86144852|ref|ZP_01063184.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
 gi|85837751|gb|EAQ55863.1| putative deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
          Length = 481

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 198/483 (40%), Positives = 291/483 (60%), Gaps = 23/483 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W+R DLRI DN AL +A  N  +  IAVFI+TP+QW+QH ++  ++ FIY  L Q + 
Sbjct: 4   ILWIRRDLRIHDNPALVSAVENGVS--IAVFISTPQQWQQHHLAPIKADFIYRHLKQFES 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ GI   + + ++F+D    L + C Q   T ++ N + E++E  RD   +  +   
Sbjct: 62  QLAEFGITLLHLKATDFNDQAIQLINLCKQVDATYVYANSEPEVDEQLRD---KHLIASG 118

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---------- 180
           +  K  D   +LP GS+LN   +M+KV+TPF+ A ++ +    +   P P          
Sbjct: 119 IKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQAKGIICSPTPVHSTGSAQAG 178

Query: 181 AIRLTGPVTPSNIPR-------FFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVE 232
           +        PS + +        +D+ F   D   +P+ +     ++  F   KV  Y  
Sbjct: 179 SSETDSLQNPSQLKQSLSGFSGEYDFEFPRTDSERWPLSQDVLESVIPNFLANKVNDYSR 238

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RDIP+++GTS LSPYL+IG +SPR    +L ++  DLL   +  AFSWLNELIWR+FY+
Sbjct: 239 LRDIPSVKGTSGLSPYLTIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFYK 298

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HLM  +P +  G  F      ++W  D+   +AW +G TG+P++DAAMRQL   GWMHNR
Sbjct: 299 HLMFHHPILVKGANFQQKYNGLDWYHDNPSFKAWCEGRTGYPLVDAAMRQLVETGWMHNR 358

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFRIFNP 
Sbjct: 359 LRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNPI 418

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN +   Y  PIV+HK+A    L 
Sbjct: 419 TQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNGIDSEYWQPIVEHKEARLRALA 478

Query: 473 QYY 475
            + 
Sbjct: 479 FFK 481


>gi|148975313|ref|ZP_01812237.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium
           SWAT-3]
 gi|145965237|gb|EDK30487.1| putative deoxyribodipyrimidine photolyase [Vibrionales bacterium
           SWAT-3]
          Length = 471

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 195/473 (41%), Positives = 293/473 (61%), Gaps = 13/473 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W+R DLRI DN AL +A  N  +  IAVFI+TP++W QH ++  ++ FI+  L Q++ 
Sbjct: 4   ILWIRRDLRIHDNPALVSAIENGVS--IAVFISTPQKWHQHHLAPIKADFIFRHLKQLEA 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  GI   + + ++FDD  + L     Q     +F N + E++E  RD+ L   +   
Sbjct: 62  ELADLGITLLHLKATDFDDQSKQLTELYQQLGSQAVFANSEPEVDEQARDQQL---ISSG 118

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPV 188
           +  +  D  V+LP GS+LN   +M+KV+TPF+ A ++ +    ++  P    +      +
Sbjct: 119 INLQISDCDVMLPLGSVLNQQGEMFKVFTPFKNAWLKEVQAKGIQCSPAVLTSKNNAKAL 178

Query: 189 TPSNIPRF-----FDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            P+N+        +D+ F  +D   +P+ +    +++  F   KV  Y   RDIP+++GT
Sbjct: 179 LPNNLQTLQLASDYDFDFPHVDSSRWPLSQDVLGNVIPNFLANKVNDYAHLRDIPSVKGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL+IG +SPR    +L ++  DLL   +  AFSWLNELIWR+FY+HLM  +P + 
Sbjct: 239 SGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFYKHLMFHHPKLV 298

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G  F      ++W +D    +AW +G TG+P++DAAMRQL   GWMHNRLRM+ ASFL 
Sbjct: 299 KGANFQQKYNGLDWYQDHPNFKAWCEGKTGYPLVDAAMRQLVDTGWMHNRLRMVVASFLT 358

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE +FM  L+DGD ++NNGGWQWA+STG D+ PYFRIFNP  Q ++FDP+G
Sbjct: 359 KHLLIDWRWGERFFMDHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNPITQSEKFDPKG 418

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            FIR ++PEL N+P +++H PH ++ KN ++  Y  PIV+HK+A    L  + 
Sbjct: 419 IFIRKYIPELKNIPDKHVHFPHDYIAKNGINSEYWQPIVEHKEARLRALAFFK 471


>gi|145588429|ref|YP_001155026.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046835|gb|ABP33462.1| deoxyribodipyrimidine photo-lyase type I [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 492

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 180/498 (36%), Positives = 255/498 (51%), Gaps = 35/498 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---------ARQ 57
           M   LVWLR DLR+ DN AL+ A   S  +V   FI   E  +               R+
Sbjct: 1   MQKGLVWLRRDLRLYDNAALHYALKESK-QVWVTFIFDEEILKPLLKGELDAQRLKHDRR 59

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI+  L Q+ + L ++G          F   +E +        V  +F N  YE + +
Sbjct: 60  VDFIWQGLEQIDEELRKQGGGLIVR----FGKPVECIPQIAKDLGVDTVFTNHDYEPSAI 115

Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ ++  L +  +  +SF D V+     IL ++  ++ ++TP++   ++ L + DL +
Sbjct: 116 ARDEAVKTLLAKSDIQFESFKDQVIFEKKEILTNSNTVFSIFTPYKNNWLKTLQEKDLVA 175

Query: 177 LPVPAIRLTGPVTP----SNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYY 230
               A        P      IP      F    I+   P G +     L  F   ++  Y
Sbjct: 176 YECSAKPGQFAAIPKKLAQEIPTLESMGFCKTGIEAYLPPGAEGGQAFLEDFLP-RIDQY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              RD PAI+G S LS +L  G+LS R              +    GA  WL+ELIWR+F
Sbjct: 235 QVGRDFPAIKGVSYLSTHLRFGMLSIRGLVREAHRRM----LAGSMGATIWLSELIWRDF 290

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           Y  ++A +P +  G  F P  + I W +      L  AW +G TG+P++DAAM QLN  G
Sbjct: 291 YFMILANHPRLAKGASFKPDYDNIVWEQGSVAKKLFAAWCEGKTGYPLVDAAMHQLNQSG 350

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+ ASFL KDL VDWR GE YF   L D +L+SNNGGWQWA+S+G D+ PYFR
Sbjct: 351 YMHNRLRMVVASFLTKDLGVDWRWGEAYFAEHLNDFELSSNNGGWQWASSSGCDAQPYFR 410

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDL--SLNYPLPIV 461
           IFNP  Q ++FDP+G FIR +LP+LN++  + IHAP       L+   +    +YPLP+V
Sbjct: 411 IFNPITQSEKFDPEGKFIRRYLPQLNHLSKKSIHAPWKAGHIELEAAGITLGRDYPLPVV 470

Query: 462 DHKKACHHTLNQYYAAKK 479
           DH +A   TL +Y   KK
Sbjct: 471 DHDEARKKTLVRYSVVKK 488


>gi|119497467|ref|XP_001265492.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya
           fischeri NRRL 181]
 gi|119413654|gb|EAW23595.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya
           fischeri NRRL 181]
          Length = 584

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 180/499 (36%), Positives = 264/499 (52%), Gaps = 19/499 (3%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58
           +A  A +  + W ++DLR+ DN+AL  A       +  +IA++I +P+    H +S  + 
Sbjct: 85  RAIRANNAVVYWFKSDLRLYDNRALRLAYETAKEHNIPLIALYILSPQDLTAHLLSPARV 144

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
             I  +L Q+++ LS+  I           +  + +   C Q     L+ N +YE++E+R
Sbjct: 145 DLILRTLHQLKRDLSELDIPLYLETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDELR 204

Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---- 173
           R+  L +      I   +  D+ ++PPG + +   + Y VY+P+ +  +  L +      
Sbjct: 205 REAKLVRLCAKNGIKFDTAHDACVVPPGQVTSQQGKQYAVYSPWYRTWLAYLNENPDCLE 264

Query: 174 ----LRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                 S P  A +    +  S +P      +  +   Q +  ++P GE  AL  L  F 
Sbjct: 265 LSEEPGSNPGDARKYFKELFDSEVPAAPENKQLSEEEKQHLGQLYPAGEHEALRRLEAFL 324

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           +EKV  Y E R++ + Q TS LSPY + G+LS R      +      L     G   W+ 
Sbjct: 325 EEKVRDYAEARNMVSGQTTSILSPYFASGLLSARTAIEHARRANKGSLQHGDPGLVHWIG 384

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           E+ WREFYRH++  +PS+CM K F P    +EW  D      W +G TGFPI+DAAMRQ+
Sbjct: 385 EVAWREFYRHVLVHWPSICMNKCFKPEFTNLEWEYDEDRFTTWCEGKTGFPIVDAAMRQV 444

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
               WMHNR RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  
Sbjct: 445 KQDKWMHNRTRMIVASFLSKDLLIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQ 504

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVD 462
           PYFRIFNP  Q +RFDP G +IR W+PEL ++    IH P++     +   N YP P+VD
Sbjct: 505 PYFRIFNPLRQSERFDPDGEYIRKWVPELRDIKEAAIHEPYARGAGANAEKNGYPRPMVD 564

Query: 463 HKKACHHTLNQYYAAKKQS 481
           H K+    L++Y  A K  
Sbjct: 565 HSKSRDLALHRYKRACKNG 583


>gi|77362362|ref|YP_341936.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877273|emb|CAI89490.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 468

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 186/468 (39%), Positives = 268/468 (57%), Gaps = 5/468 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L W R DLR+  N+AL  A +N      A+F    +QW+QH  +  Q   +   +  + 
Sbjct: 3   TLFWFRRDLRLFSNEALIQALNNGANH--AIFFICEKQWQQHQAAPIQIDLLKRRITYLH 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L+  GI         F D    L  +C    V  +  N +YE+NEV RDK +  +   
Sbjct: 61  QQLADHGITLHIIDAPYFADCETQLIDFCKANNVKHVIANTEYELNEVNRDKAILAKCDE 120

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    ++  ++ P GS+ N + +MYKV+TPF++A ++  ++        P   ++G  
Sbjct: 121 LSITFTLYEGDLIAPVGSVKNQSNEMYKVFTPFKRAWLKQYIEVHFSLPQWPVEHVSGGA 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             S           +    +P+ ++    ++  F  +K+  Y + RDIP+I+GTS LSPY
Sbjct: 181 QLSKNETNL-LKGDSSSEKWPVDDKTLATVVDNFICDKLTSYDDHRDIPSIKGTSGLSPY 239

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L++G++S +Q    +++ + D+L   KS  F+W+NELIWREFYRHL+A +P +  G  F 
Sbjct: 240 LALGIISTKQLLINIQQRYPDILSTSKSKTFTWVNELIWREFYRHLIAQFPKLSRGDNFN 299

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                + W       +AW +G TG+P++DAAMRQL   GWMHNRLRM+ ASFL K LL+D
Sbjct: 300 EKYNAVVWRSSDDDFKAWCEGRTGYPLVDAAMRQLLQTGWMHNRLRMVVASFLTKHLLID 359

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE +FM  L+DGDLASNNGGWQWAASTG D+ PYFR+FNP  Q +RFDP G FIR +
Sbjct: 360 WRKGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPIRQSERFDPNGEFIRKY 419

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475
           +PEL NVP ++IH PHS+L     S + Y   IVDHK A    L  + 
Sbjct: 420 IPELENVPDKHIHFPHSYLASLGQSDSCYWPAIVDHKAARERALAAFK 467


>gi|262369609|ref|ZP_06062937.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           johnsonii SH046]
 gi|262315677|gb|EEY96716.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           johnsonii SH046]
          Length = 475

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 180/477 (37%), Positives = 267/477 (55%), Gaps = 14/477 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W R DLRI D+ AL+ A  +    ++A+ I +P+QW  H  +A +       L  +
Sbjct: 1   MNIIWFRQDLRIHDHAALWHASQHG--PMLALVILSPQQWLLHHDAAVKIDLYVRQLHDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           ++SL+Q  I         + D    L S C   +V K+F N +  +NE++RD  +++ L 
Sbjct: 59  KQSLAQLNIPLLILNIPLWQDIPPQLSSLCHTLQVQKIFANIEMGVNELKRDAEVQQCLN 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT-- 185
           Q  +    F D  L P  SI N + + Y+V+  F+K   + L     +  P+P+ +    
Sbjct: 119 QQHIEFTLFQDRTLFPLNSIRNQSDKPYQVFGAFKKTCYERLNIGLPQCYPLPSAQQPIL 178

Query: 186 -------GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                        ++          I   +P  E  AL +L  F   KV  Y ++RD P 
Sbjct: 179 LPADLNAAIPHIESLIHVNTNELNQIKAYWPETEIYALSVLDDFIDHKVSDYQKERDFPF 238

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  TSQLS YL++G++S RQC N L        +   +G  +WL+EL+WREFY+H++  +
Sbjct: 239 LNSTSQLSAYLNLGIVSIRQCLNALFRAQHGQFMIDNTGQQTWLDELLWREFYQHILFDF 298

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V    PF   T++I W      L AW+QG TG PI+DA MRQL   GWMHNR+RMI A
Sbjct: 299 PQVSKHLPFKANTQRIVWRDSPEDLNAWQQGRTGIPIVDAGMRQLLATGWMHNRVRMIVA 358

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL K+LL+DWR+GE++FM  L DGDLA+NNGGWQW ASTG D+VPYFR+FNP  Q ++F
Sbjct: 359 MFLTKNLLIDWRLGEQWFMQHLADGDLAANNGGWQWCASTGTDAVPYFRVFNPVSQSQKF 418

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           D  G +IR WLPEL ++  + IH P++   + ++ L+YP PIVD K +    +  + 
Sbjct: 419 DSNGDYIRQWLPELAHLDAKSIHEPYA--KQQNMELDYPQPIVDLKSSRVRAIEAFK 473


>gi|332529962|ref|ZP_08405912.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
 gi|332040435|gb|EGI76811.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
          Length = 501

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 190/474 (40%), Positives = 265/474 (55%), Gaps = 9/474 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVWLRNDLR+ DN AL+AA       VIAV++       +  I+  +  F    L  +
Sbjct: 2   TALVWLRNDLRLHDNPALHAAAELRQG-VIAVYVHCDAYVTRFPIAPSRLDFARRHLHLL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L++  I  Q  + +   +    L        ++  F+N +Y ++E+ RD+ + + L+
Sbjct: 61  TTELARHHIALQVLRVAQVSEIAPALARLARDHGISHCFFNAEYPLDELNRDQQVNQLLR 120

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V  K   D V++PPG + N A   YKV+TP+++  +Q      LR +  PA +   P
Sbjct: 121 AQGVTVKRCHDRVVIPPGKVRNEAGTPYKVFTPYKRKWLQLASLLPLRPVEAPAHQAALP 180

Query: 188 VTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              ++       F     + +   +P GE  A   L++F  + + +Y  QRD+PA+ GTS
Sbjct: 181 CPSASAQDIDHLFEGQELRDLSTPWPAGEAVARARLQRFVAQDLDHYQTQRDLPAVAGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL+IG LSPRQ    +            +G  +W++ELIWREFY+HL+  YP VCM
Sbjct: 241 GLSPYLAIGALSPRQALAAVLSR-TGGDWNANAGVSTWISELIWREFYQHLVVDYPQVCM 299

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +     TE   W +       W+QG TG PIIDAAMRQLN  GWMHNRLRM+ A FL K
Sbjct: 300 HRAMQVHTEAFPWRQAPEDFALWRQGRTGIPIIDAAMRQLNATGWMHNRLRMLVAMFLTK 359

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L +DWR GE YFM QL+DGD A+NNGGWQW+ASTG D+ PYFRIFNP  Q +RFDP+G 
Sbjct: 360 NLQIDWRWGERYFMEQLIDGDFAANNGGWQWSASTGTDAAPYFRIFNPITQSQRFDPRGQ 419

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FIR W+PEL  +  + IHAPH  L  +     YP P+VD   +   T+  + + 
Sbjct: 420 FIRLWVPELAGLSDKAIHAPH--LAPSGPPPGYPAPMVDLGASRKATIALFASL 471


>gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 482

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 165/491 (33%), Positives = 259/491 (52%), Gaps = 22/491 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    ++W R DLR+ DN+AL AA H S   +I ++I  P       + A Q+ +++
Sbjct: 2   AKDAAKPVILWFRKDLRLDDNQALTAA-HRSGRPIIPLYIREPAAAGTGPLGAAQAWWLH 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + +SL +              +++E L ++  +     +F+NR+Y+   +  D  
Sbjct: 61  HSLEALNRSLQKLNGRLVLASG----EALEVLCAFIKESAAEAVFWNRRYDPAGISIDAR 116

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           ++  L +  +  +SF   +L  P  ++      Y+VYTPF +AL            P   
Sbjct: 117 IKHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGGEPEPPLDAPAKL 176

Query: 182 IRLTGPVT-----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              + P +        +P   D+    +D ++  GE+ A   L  F ++ +  Y E RD 
Sbjct: 177 RLASQPKSEVLGSWKLLPTKPDWAGDFVD-LWTPGEEGAQQRLHVFVEDALEGYKENRDY 235

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA   TS LSP+L++G +SP + W+  +     +   P +    +  E+ WREF  HL+ 
Sbjct: 236 PARPATSMLSPHLALGEISPARIWDATRGLSQRV---PAADIVHFREEIAWREFSYHLLF 292

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P +     +    +  EW  +S   +AW++G TG+PI+DA MRQL   GWMHNR+RMI
Sbjct: 293 HFPRLASAN-WNDRFDGFEWRNNSGDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMI 351

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+KDL++DWR GE +F   L+D D A+N   WQW A +G D+ P+FRIFNP +QG+
Sbjct: 352 VASFLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGE 411

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHT 470
           +FDP G ++R ++PEL  +  +YIH    AP S LD+  ++L   YP PIVDH  A +  
Sbjct: 412 KFDPDGDYVRTYVPELRELGPKYIHRPFEAPKSMLDEAGITLGQTYPKPIVDHASARNRA 471

Query: 471 LNQYYAAKKQS 481
           L  Y A +  +
Sbjct: 472 LAAYKAIRDAA 482


>gi|163800188|ref|ZP_02194089.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
 gi|159175631|gb|EDP60425.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
          Length = 471

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 203/477 (42%), Positives = 278/477 (58%), Gaps = 12/477 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  D+ AL AA       V+A F++TPEQWR+H +S  Q+  I   L+ +
Sbjct: 1   MILVWFRRDLRTLDHTALKAALETGQ-PVVAGFVSTPEQWREHNMSPMQADLIARRLVLL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L+   I   Y +   F D  + +  + +   V  +  N  YE+NE   D+ +   L 
Sbjct: 60  EEELTGLNIPLIYKEVPKFADVGKVIHQWAVSLNVKSVMANIHYEVNEQALDREVVNLLN 119

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   +F D  +  P ++LN   + +KV+TPF++A +       +      A      
Sbjct: 120 ESSITFDAFHDKCVHAPTTVLNKQGEYFKVFTPFKRAWLSQFQMPKVWKPEPQAALSKEV 179

Query: 188 VTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +      R+     F YP ++ +  + +     L  LR F +E+   Y  +RD PA+ GT
Sbjct: 180 LQAVKADRYHVDVSFSYPRESSER-WHVSTSAILQQLRGFTRERSDAYQAERDFPAVDGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQLSPYL+IG LSPRQC  RL  E     +    G  +WL+E+IWREFY+HL+ F P + 
Sbjct: 239 SQLSPYLAIGALSPRQCIARLHAENPHTDL--TEGKATWLSEIIWREFYQHLLVFEPKLV 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G+ FI W +KIEW+ D    + W  G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL 
Sbjct: 297 KGQGFIQWEDKIEWSYDEVAFERWSNGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL +DWR GE YFMS+L+DGD A+NNGGWQW+ASTG D  PYFRIFNP  QG++FD  G
Sbjct: 357 KDLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFDHDG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           TF+RHW+PE+  VP ++IH P  W   N L  +Y  P+VDHK     TL  +  AK+
Sbjct: 417 TFVRHWVPEIKQVPNKFIHNPWLWSGFNLL--DYHKPMVDHKVEREITLRLFKNAKE 471


>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
 gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
          Length = 476

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 167/481 (34%), Positives = 251/481 (52%), Gaps = 18/481 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ + W R DLR++DN  L  A   S +K++ +F   P   ++  I+  + +++   L  
Sbjct: 3   NIIIFWHRRDLRLSDNIGLSKAYQKS-SKLVGLFCLDPNILQRDDIAPARVNYMLGCLRN 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+S  + G      Q        E   S     +V  + +N   E     RDK +++ L
Sbjct: 62  LQESYQKLGGQLLIFQGQPTKIIPEVAKSL----KVNCVIWNNDVEPYSKERDKQVKEAL 117

Query: 128 QHRVIC-KSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           Q + I  +++ D +L  PG IL       YKVYTPF ++ ++        S+        
Sbjct: 118 QEKGITSETYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEDKANIAESIEKLDSLSD 177

Query: 186 GPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             +         D P          I  +  +GE  A   L  FC   +Y Y EQR+ PA
Sbjct: 178 EEINTVKNIGLIDLPTAKDLGYGWDIPLLLELGETAAKEQLHYFCNSTIYSYQEQRNFPA 237

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAF 297
           I GTS+LSP    GV+  R+ W    E + +    + +    +W  E+ WREFY+H + F
Sbjct: 238 IDGTSKLSPAFKFGVIGIREVWQTTIEAYENTRSDEARENIQTWQQEIAWREFYQHCLYF 297

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +  G P+    +   W+ +    QAW +G TG+PI+DAAMRQLN  GWMHNR RMI 
Sbjct: 298 FPELAEG-PYREEFQDFPWDNNEDHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIV 356

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q ++
Sbjct: 357 ASFLTKDLMINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQK 415

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +DP G +IR W+PE++++ T+Y+        +   S  YP PIVDHK        +Y   
Sbjct: 416 YDPDGEYIRLWVPEISSLDTEYLVTGKIPPLEAH-SCGYPQPIVDHKHQQREFKERYKQI 474

Query: 478 K 478
           K
Sbjct: 475 K 475


>gi|302924301|ref|XP_003053859.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734800|gb|EEU48146.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 597

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 163/486 (33%), Positives = 257/486 (52%), Gaps = 20/486 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLRI+DNKAL  A      +   +IA+FI +P+ +  H  +  +  F+  +L  
Sbjct: 105 VHWFKMDLRISDNKALALASDKAKQAGVPLIAMFIVSPQDYEAHLRAPVRVDFMLRTLAV 164

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKR 126
           +++ L++  I           +  + +     +   + ++ N +YE++E+RR+   +   
Sbjct: 165 LKEDLAKLDIPLYVETVEKRRNIPDRILELMDEWGASHMYANMEYEVDELRREAAMIRDF 224

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            ++    ++  D+ ++PPG +   A + Y VYTP+ +A + ++ +               
Sbjct: 225 AENGKAFEAVHDTCVVPPGKLQTGAGKQYAVYTPWYRAWVAHIHENPDLLELYDPPEKNP 284

Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                   + FD                 + +  ++P GE  A   L KFC+E +  Y +
Sbjct: 285 ASARKTFKKLFDIDIPDAPKNKQLDTEEKKRLRSLWPCGEHEAKKRLDKFCEEMIGNYHK 344

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
           +R+IP+  GTS LS +L+ G +S R C    ++      L     G  +W++E+ WR+FY
Sbjct: 345 KRNIPSDLGTSCLSVHLASGTISARTCVRTARDRNKTKKLNAGSEGIQTWISEVAWRDFY 404

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    I W+ D     AW +G TGFPI+DAAMRQ+  +G+MH+
Sbjct: 405 KHVLVNWPYVCMNKPFKPEYSNISWSYDEEQFAAWCEGRTGFPIVDAAMRQMKHLGYMHS 464

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI A FL KDLL+DWR GE +FM  L+DGD ASNNGGW ++AS G D  PYFRIFNP
Sbjct: 465 RCRMIVACFLAKDLLIDWRKGERFFMESLIDGDFASNNGGWGFSASVGVDPQPYFRIFNP 524

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470
            +Q ++FDP G +IR W+PEL +   + +H P++         N YP  IV+HK      
Sbjct: 525 LLQSEKFDPDGDYIRKWVPELKDCNKKEVHDPYNRGAGPKAKKNGYPKAIVEHKGCRERA 584

Query: 471 LNQYYA 476
           L  Y  
Sbjct: 585 LEAYKE 590


>gi|117919615|ref|YP_868807.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3]
 gi|117611947|gb|ABK47401.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3]
          Length = 493

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 207/474 (43%), Positives = 276/474 (58%), Gaps = 17/474 (3%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSH 59
           T A    L+W R DLR+TDN+AL AAC        AK+ A++IATP QW  H ++  Q  
Sbjct: 6   TPAAKHALMWFRQDLRLTDNQALTAACDWVRQAPGAKLRAIYIATPNQWLSHDMAPIQID 65

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI   +  + + L+  GI F+  Q  +F +   +L SYC +  V ++F  R+ EINE +R
Sbjct: 66  FIQRHVNLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINEQKR 125

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D+     L   +     D+  LLPPG++LN +  MYKV+TPF +   +   +  +  L V
Sbjct: 126 DQA---CLDTGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREIAAKRAIFPLAV 182

Query: 180 PAIR---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           PA     L  P   S   RF           +  GE  A  IL  F K+KV  Y + RD 
Sbjct: 183 PAPLGPMLPEPKPISFKERFQSTSKLTSSEQWAAGEGQAKRILTAFIKQKVQDYKQDRDF 242

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA+ GTS +SPYL++GVLSPRQC   L   F D+++   S   +WLNELIWREFYRHL+ 
Sbjct: 243 PALDGTSVISPYLALGVLSPRQCIAALLGRFPDVIVDDTSPGRTWLNELIWREFYRHLLV 302

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P +  G  F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+
Sbjct: 303 AFPDLSKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMV 362

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K LL+DWR GE YF   L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q +
Sbjct: 363 VASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSE 422

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLN--YPLPIVDH 463
           +FDP G+FIR +LPEL +   + +H P      S  +   L  +  YP  IV+H
Sbjct: 423 KFDPDGSFIRKYLPELASWGIKRLHQPNMQKTPSLFEAPMLESDSAYPCAIVEH 476


>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
           13941]
 gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
           13941]
          Length = 487

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 175/486 (36%), Positives = 241/486 (49%), Gaps = 22/486 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + + W R DLR+ DN AL+ A   SD +VI +FI            A +  F+ A+L  +
Sbjct: 2   IWIHWFRRDLRLHDNPALHTASIRSDGRVIPLFILDDAILHAPRTGAARIAFMIAALRDL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L  +G      +       ++ + +   +   T + +NR Y     RRD  +E  L+
Sbjct: 62  DANLRARGSRLVIRRGRT----LDVIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALR 117

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL----PVPAIR 183
              V     +D+V+  P  +     + Y VYTP+R+       Q     L    P     
Sbjct: 118 DLNVETSIAEDAVVFSPDDVRTGDGRPYTVYTPYRRRWRALTEQRRAEVLRAIEPPLLRP 177

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK----EKVYYYVEQRDIPAI 239
               V    +P   D        + P GE +    L  F        +  Y E RD+ A 
Sbjct: 178 APEAVADQTVPDHADLGIVVSQRIPPGGETHGAARLAAFVDLAAAHSIAGYAEGRDLLAE 237

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAF 297
             TS+LSPYL  G ++PRQ           +    ++     +W+ EL WR+FY  ++  
Sbjct: 238 PATSRLSPYLRFGCVAPRQALRAALRLLDIVGDDHRTVRSIETWIGELAWRDFYYQILWH 297

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           YP V   + F P  + + W  D  L  AWK+G TG+PIIDAAM QL    WMHNR RMI 
Sbjct: 298 YPHVVR-RSFKPQYDALAWENDPALFDAWKEGRTGYPIIDAAMHQLRQEAWMHNRARMIV 356

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDLL+DWR GE YFM QL+DGD A+NNGGWQW+A TG D+ PYFRIFNP  QG++
Sbjct: 357 ASFLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQK 416

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471
           FDP+G ++R +LPEL  VP +YIHAP +            +  +YP PIVDH +     L
Sbjct: 417 FDPKGLYVRRYLPELAQVPDRYIHAPWTMPRAEQQRCGVVIGRDYPAPIVDHAERRMRAL 476

Query: 472 NQYYAA 477
             Y A 
Sbjct: 477 ALYRAV 482


>gi|146293808|ref|YP_001184232.1| deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens CN-32]
 gi|145565498|gb|ABP76433.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella putrefaciens
           CN-32]
          Length = 493

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 198/491 (40%), Positives = 279/491 (56%), Gaps = 16/491 (3%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSH 59
           AT+ +   L+W R DLR+ DN+AL AAC         + A++IATP QW  H ++  Q  
Sbjct: 9   ATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWECHDVAPIQLD 68

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI   +  + K L   GI F+  Q   F D  +++  YC Q  +T++F   + EINE  R
Sbjct: 69  FIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEINERVR 128

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D+     +   V     D+  LL PG++LN + +MY+V+TPF +   +   +  +  L V
Sbjct: 129 DQA---CIDAGVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAILPLGV 185

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           PA        P  +    +   +     +  GE  A  +L  F ++KV  Y + RD PA+
Sbjct: 186 PAPLGPVLPEPKALNLAVN---KVSSEQWGAGEGQAKRLLCDFIQQKVQDYKQDRDFPAL 242

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS +SPYL+IGVLS RQC   L + F ++++   S   +WLNEL+WREFYRHL+  +P
Sbjct: 243 DGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLLVAFP 302

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +     F    ++++W  +    +AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ AS
Sbjct: 303 DLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVAS 362

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FD
Sbjct: 363 FLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFD 422

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK-------NDLSLNYPLPIVDHKKACHHTLN 472
           P G+FIR +LPEL +   + +H P++                 YP  IVDH +A    L+
Sbjct: 423 PDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARVRALS 482

Query: 473 QYYAAKKQSLL 483
                KK S L
Sbjct: 483 VLGVLKKASAL 493


>gi|226946177|ref|YP_002801250.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ]
 gi|226721104|gb|ACO80275.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ]
          Length = 468

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 188/477 (39%), Positives = 277/477 (58%), Gaps = 16/477 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+WLR+DLR+ DN+AL AA        +A+++ +P QWR H  +  +  F   +L ++ 
Sbjct: 3   QLIWLRSDLRVRDNRALGAAM--GAGPTLALYLLSPAQWRTHDDAPCKVDFRLRNLAELS 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L+  G+     +   +D++   L   C +Q + ++  N +Y ++E RRD  +E+ LQ 
Sbjct: 61  HGLASLGVPLLIRRVDTWDEAPALLTRLCHEQNIVRVHVNDEYGVHESRRDAAVERALQA 120

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----SLPVPAIRL 184
           + +  +   D +LL P S+   +   ++++  FR+A    L  +        +  P + +
Sbjct: 121 QGVGLQRHLDQLLLAPDSLRTRSGGSFRLFAQFRRACHWRLAVSLPAVGGLPMAQPPLNV 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            G   P+ +  F   P +++  ++P GE  A   L +F + ++  Y E RD PA  GTS+
Sbjct: 181 VGNAVPAALEGFATPP-ESLRRLWPAGEIAAQRRLHEFVENRLAAYAEARDFPAEPGTSR 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ GVLSPRQC + +           +  A +W +EL+WREFY+H++A +P V MG
Sbjct: 240 LSPYLAAGVLSPRQCLHAVLR----TGGFDRPEASAWFDELLWREFYKHILAGHPRVSMG 295

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +     TE + W      L AW+QG TGFP+IDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 296 RALRTETEALPWRDAPQELAAWQQGRTGFPLIDAAMRQLLATGWMHNRLRMVVAMFLSKN 355

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW ASTG D+VPYFR+FNP  Q +RFDP+G F
Sbjct: 356 LLIDWRHGERWFMHHLIDGDLAANNGGWQWCASTGTDAVPYFRLFNPLAQSRRFDPEGRF 415

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IR WLPEL ++  + IHAP   L        YP PIVD   +    L  + A +++ 
Sbjct: 416 IRQWLPELASLDNRDIHAPAGALRPA----GYPPPIVDLPSSRERALAAFKALRRRG 468


>gi|120598121|ref|YP_962695.1| deoxyribodipyrimidine photo-lyase [Shewanella sp. W3-18-1]
 gi|120558214|gb|ABM24141.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. W3-18-1]
          Length = 493

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 198/491 (40%), Positives = 279/491 (56%), Gaps = 16/491 (3%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSH 59
           AT+ +   L+W R DLR+ DN+AL AAC         + A++IATP QW  H ++  Q  
Sbjct: 9   ATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVAPIQLD 68

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI   +  + K L   GI F+  Q   F D  +++  YC Q  +T++F   + EINE  R
Sbjct: 69  FIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEINERVR 128

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D+     +   V     D+  LL PG++LN + +MY+V+TPF +   +   +  +  L V
Sbjct: 129 DQA---CIDAGVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAILPLGV 185

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           PA        P  +    +   +     +  GE  A  +L  F ++KV  Y + RD PA+
Sbjct: 186 PAPLGPVLPEPKALNLAVN---KVSSEQWGAGEGQAKRLLCDFVQQKVQDYKQDRDFPAL 242

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS +SPYL+IGVLS RQC   L + F ++++   S   +WLNEL+WREFYRHL+  +P
Sbjct: 243 DGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLLVAFP 302

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +     F    ++++W  +    +AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ AS
Sbjct: 303 DLSKNYNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVAS 362

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FD
Sbjct: 363 FLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFD 422

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK-------NDLSLNYPLPIVDHKKACHHTLN 472
           P G+FIR +LPEL +   + +H P++                 YP  IVDH +A    L+
Sbjct: 423 PDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARVRALS 482

Query: 473 QYYAAKKQSLL 483
                KK S L
Sbjct: 483 VLGVLKKASAL 493


>gi|319427180|gb|ADV55254.1| Deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens 200]
          Length = 493

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 198/491 (40%), Positives = 279/491 (56%), Gaps = 16/491 (3%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSH 59
           AT+ +   L+W R DLR+ DN+AL AAC         + A++IATP QW  H ++  Q  
Sbjct: 9   ATSNVGDTLMWFRQDLRLADNQALTAACDWARAQGTALRAIYIATPIQWACHDVAPIQLD 68

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI   +  + K L   GI F+  Q   F D  +++  YC Q  +T++F   + EINE  R
Sbjct: 69  FIERHINLLAKGLGCLGIQFELIQLERFADIPQFMLDYCQQHNITRVFAGSEPEINERVR 128

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D+     +   V     D+  LL PG++LN + +MY+V+TPF +   +   +  +  L V
Sbjct: 129 DQA---CIDAGVPLLLTDEHCLLAPGTVLNLSGEMYRVFTPFSRKWREIAARHAILPLGV 185

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           PA        P  +    +   +     +  GE  A  +L  F ++KV  Y + RD PA+
Sbjct: 186 PAPLGPVLPEPKALNLAVN---KVSSEQWGAGEGQAKRLLCDFVQQKVQDYKQDRDFPAL 242

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS +SPYL+IGVLS RQC   L + F ++++   S   +WLNEL+WREFYRHL+  +P
Sbjct: 243 DGTSCISPYLAIGVLSARQCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRHLLVAFP 302

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +     F    ++++W  +    +AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ AS
Sbjct: 303 DLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRLRMVVAS 362

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DWR GE YF  +L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++FD
Sbjct: 363 FLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFD 422

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK-------NDLSLNYPLPIVDHKKACHHTLN 472
           P G+FIR +LPEL +   + +H P++                 YP  IVDH +A    L+
Sbjct: 423 PDGSFIRKYLPELASWGIKQLHQPNTAKTPLLFKQPLFAEQAAYPSAIVDHTEARVRALS 482

Query: 473 QYYAAKKQSLL 483
                KK S L
Sbjct: 483 VLGVLKKASAL 493


>gi|220934567|ref|YP_002513466.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995877|gb|ACL72479.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 483

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 170/482 (35%), Positives = 247/482 (51%), Gaps = 20/482 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+TDN AL  A    D +VI V+I  PE+            +++ SL  + 
Sbjct: 3   TLLWFRRDLRLTDNPALARALE--DGEVIPVYIHAPEEEGDWAPGGASLWWLHHSLAALG 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L  +G+     Q +    S+E L +   +    ++ +NR YE   + RD  ++++L+ 
Sbjct: 61  EDLRARGVDLVIRQGA----SLETLQALIRETGAQQVLWNRLYEPALIARDTGIKQQLRD 116

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLT 185
           + I  +SF+ ++L  P ++       YKV+TPF KA +   V  D+   P       +L 
Sbjct: 117 QGIRTQSFNAALLFEPWTVAKQDGTPYKVFTPFWKACLGLGVPVDVTPAPERIQGPAQLP 176

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              T  ++    D  + A    ++  GE  AL  L +F  E V  Y E R+ P   G+S+
Sbjct: 177 PGETLKSLGLLPDIDWAAGFTELWQPGEAGALARLAEFMDEAVADYDEMRNRPDRDGSSR 236

Query: 245 LSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           LSPYL  G + PRQ     +  +          G  S+L E+ WREF  HL+  +P    
Sbjct: 237 LSPYLHFGEIGPRQAAAACQVAKDRHGGKAAHQGIDSFLREIGWREFAHHLLYHFPRTS- 295

Query: 304 GKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            +P  P   K+ W + D   L+AW++G TG P++DAAMR L   GWMHNR+RMI AS L 
Sbjct: 296 DEPLDPRFRKLPWRELDEETLRAWQRGRTGIPLVDAAMRALWATGWMHNRVRMIVASLLT 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+L   W  G  +F   L+D DLA N  GWQW A  G D+ PYFR+FNP +QG+RFDP G
Sbjct: 356 KNLGAHWLTGARWFWDTLVDADLAGNTLGWQWTAGCGADAAPYFRVFNPVLQGERFDPNG 415

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYA 476
            ++R W+PEL  +P +YIH P    +         L  NYP PIVD  ++    L  +  
Sbjct: 416 DYLRQWVPELAKLPAKYIHRPWEAPEAILKAAGVRLGGNYPRPIVDLAESRRQALEMWEV 475

Query: 477 AK 478
            K
Sbjct: 476 IK 477


>gi|37676017|ref|NP_936413.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016]
 gi|37200557|dbj|BAC96383.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016]
          Length = 471

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 208/476 (43%), Positives = 286/476 (60%), Gaps = 12/476 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVWLR DLR  DN AL  A   S  +V+A F+ATP QWR H ++  Q+  I   L 
Sbjct: 1   MAMKLVWLRRDLRCVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L+   I   Y +  ++  S   + ++  Q  V+++  NR+YE+NE  RD+ L  R
Sbjct: 60  VLAEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVLNREYEVNERVRDEQLVNR 119

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    +     +D  +  PG +LN     +KV+TPF+KA +++ +   +         + 
Sbjct: 120 LASSEMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFIPPQIIKTSAAQPVVL 179

Query: 186 GPVTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                S++      F YP Q+ +  + +  Q     LR+FC E+V  Y EQRD PA  GT
Sbjct: 180 PEALQSSLWHEQAPFSYPRQSSE-AWSVDSQQIRETLRRFCHEEVDRYHEQRDFPATAGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL+IG +S RQC  RL  +   L     +G   WL+ELIWREFY HL+ F P + 
Sbjct: 239 SVLSPYLAIGAISVRQCIARLYWQQSYL----SNGREVWLSELIWREFYHHLIHFEPKLV 294

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G+ F+ W + + W       + W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL 
Sbjct: 295 KGQGFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 354

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G
Sbjct: 355 KDLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFDPNG 414

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            F++HWLPEL  VP++++H P  WL    + L+YP P+VDHK+    TL+ Y  AK
Sbjct: 415 EFVKHWLPELAEVPSKFVHQPWKWL--GHMRLDYPAPMVDHKQEREITLSLYTQAK 468


>gi|84386253|ref|ZP_00989282.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
 gi|84379023|gb|EAP95877.1| putative deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
          Length = 481

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 200/483 (41%), Positives = 287/483 (59%), Gaps = 23/483 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W+R DLRI DN AL AA  N      AVFI+TP+QW+QH ++  ++  IY  L Q++ 
Sbjct: 4   ILWIRRDLRIHDNPALVAAVENG--VTTAVFISTPQQWQQHHLAPIKADLIYRHLQQLES 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ GI   + +  +FDD    L     Q   T ++ N + E++E  RDK L   +   
Sbjct: 62  QLAEFGIDLLHLKARDFDDQAVQLTHLYKQLDATCIYANSEPEVDEQLRDKRL---IASG 118

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-------- 182
           +  K  D   +LP GS+LN   +M+KV+TPF+ A ++ +    +   P P          
Sbjct: 119 IKLKITDCDTILPLGSVLNKQGEMFKVFTPFKNAWLKEVQVKGIICSPAPVAPAKLQQTP 178

Query: 183 ---------RLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVE 232
                    +L+       I   +D+ F  +D   +P+ +     ++  F   KV  Y  
Sbjct: 179 LQQTQRPQSQLSDDSKALRISADYDFDFPRVDSSRWPLSQDVLESVIPNFLSNKVNDYSR 238

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RDIP+I+GTS LSPYL+IG +SPR    +L ++  DLL   +  AFSWLNELIWR+FY+
Sbjct: 239 LRDIPSIKGTSGLSPYLAIGAVSPRWLAIQLIQQQPDLLFDTQLPAFSWLNELIWRDFYK 298

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HLM  +P +  G  F      ++W  D+   +AW +G TG+P++DAAMRQL   GWMHNR
Sbjct: 299 HLMFHHPKLVKGANFQQKYNGLDWYHDNPSFKAWCEGKTGYPLVDAAMRQLVETGWMHNR 358

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+ ASFL K LL+DWR GE +FMS L+DGD ++NNGGWQWA+STG D+ PYFRIFNP 
Sbjct: 359 LRMVVASFLTKHLLIDWRWGERFFMSHLIDGDFSANNGGWQWASSTGCDAQPYFRIFNPI 418

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            Q ++FDP+G FIR ++PEL N+P +++H PH ++ KN +   Y  PIV+HK+A    L 
Sbjct: 419 TQSEKFDPKGIFIRKYIPELQNIPDKHVHFPHDFIAKNRIDSEYWQPIVEHKEARLRALA 478

Query: 473 QYY 475
            + 
Sbjct: 479 FFK 481


>gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis alexandrii HTCC2633]
 gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis alexandrii HTCC2633]
          Length = 480

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 171/486 (35%), Positives = 258/486 (53%), Gaps = 23/486 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              +VW R DLR+ DN A   A   + A VI V+I   +             +++ SL  
Sbjct: 6   PPVIVWFRQDLRLADNPA-LQAAAATGAPVIPVYILDDDAPGDWRPGGASRWWLHHSLAS 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L Q G      +     ++ E LD+   Q     +F+NR YE    +RD+ ++  L
Sbjct: 65  LASDLQQLGGELALMKG----EAQEQLDALIEQTGADTVFWNRLYEPWARKRDEAIKSSL 120

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + R +  +SF+ S+++ P  I       YKV+TPF K+L  +   A+    P  A++L  
Sbjct: 121 KDRGVRARSFNGSLIVEPWDIATKTGNPYKVFTPFWKSLKADHTPAEPTGRP-DALQLHA 179

Query: 187 PVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                ++      P +      +   +  GE  A   L +F K  V  Y ++RD+P   G
Sbjct: 180 HEGGLSLDDLDLLPTKPDWSGGLQENWTPGEAAAHGRLGQFLKAAVSDYSDRRDLPGQSG 239

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G +SPRQ W+ +K+           GA ++L+E+ WREF  +L+  +P +
Sbjct: 240 TSRLSPHLHFGEISPRQVWHAVKQ----SDHARTGGADTYLSEIAWREFSYNLLYHFPDL 295

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                F    +  EW++    L+AW++G TG+PI+DA MR+L   GWMHNR+RMI ASFL
Sbjct: 296 PEAN-FQSKFDAFEWDECEDKLKAWQKGQTGYPIVDAGMRELWATGWMHNRVRMIVASFL 354

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +KDL + WR GE++F   L+D DLASN   WQW A +G D+ PYFR+FNP  Q ++FDP+
Sbjct: 355 IKDLFIHWRRGEDWFWDTLVDADLASNAASWQWTAGSGADAAPYFRVFNPVGQSEKFDPK 414

Query: 422 GTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475
           G ++R W+PEL ++P + IHAP     S L +  ++L   YP PIVDH +A    L  + 
Sbjct: 415 GDYLRKWIPELADLPDKVIHAPWTAEKSVLSRAGVTLGETYPEPIVDHGEARKRALAAFE 474

Query: 476 AAKKQS 481
             K   
Sbjct: 475 KIKDAG 480


>gi|114564201|ref|YP_751715.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB
           400]
 gi|114335494|gb|ABI72876.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina
           NCIMB 400]
          Length = 477

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 196/482 (40%), Positives = 267/482 (55%), Gaps = 14/482 (2%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           T+M+  L+W R DLR+ DN AL AAC    ++   V AV+  TP QW QH ++  Q  FI
Sbjct: 2   TSMN-SLMWFRQDLRVADNPALVAACEFASSNRGHVRAVYFVTPAQWAQHDVAPIQIDFI 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              +  + ++L+  GI        +FD+    L +Y  Q  +  ++   + EINE RRD+
Sbjct: 61  QRHVNLLAQALAVLGIHLDVLHAQDFDEVQTLLAAYIAQHDIAAVYAANEPEINERRRDR 120

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L   +   V     D   +L  G + N A  MYKV++PF K       Q  +  + VPA
Sbjct: 121 AL---IDSGVPLTLIDQDCVLAAGQVKNLAGDMYKVFSPFAKKWKSIAGQRAIVPVAVPA 177

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                  TP+ +       ++     +P GE  A  IL +F   +V  Y  +RD PA++G
Sbjct: 178 PIAAVLATPNEVVFNC---YKMSSEQWPAGEGAAKRILDQFLANQVADYQAERDFPALEG 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L+IGV+S RQC   +   +   L++    A +WLNELIWREFYRHL+  +P +
Sbjct: 235 TSRLSPFLAIGVISSRQCVAAILARYPQALVEDTCPAKTWLNELIWREFYRHLLVAFPRL 294

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            M   F    + I W  +     AW  G TG+PIIDAAMRQLN  GWMHNRLRM+ ASFL
Sbjct: 295 SMNHNFNELGDGIVWRNNLAEFTAWCDGQTGYPIIDAAMRQLNQTGWMHNRLRMVVASFL 354

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LLVDWR GE YF  +L+DGDLA+NNGGWQW+A TG D+ PYFR+FNP  Q  +FDP 
Sbjct: 355 TKHLLVDWRWGERYFRQKLIDGDLAANNGGWQWSAGTGCDAQPYFRVFNPMTQSSKFDPD 414

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +FI+ ++ EL+      IH P +     L        YP PIV+HK A    +    A 
Sbjct: 415 ASFIKRYVSELSAWSLADIHQPKTINVNDLFAQRQDDRYPQPIVEHKMARLRAIEVLSAL 474

Query: 478 KK 479
           K+
Sbjct: 475 KR 476


>gi|148358421|ref|YP_001249628.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
           Corby]
 gi|148280194|gb|ABQ54282.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
           Corby]
          Length = 471

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 168/480 (35%), Positives = 253/480 (52%), Gaps = 19/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW R DLR+TDN A   AC + +  VI ++I      +   +   Q+ +++ SL+
Sbjct: 1   MTIALVWFRQDLRLTDNPAFIEACSHHEI-VIPLYIYDD---KCSVLGQAQAWWLHHSLI 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + KSL+Q+G+     + S      E +     Q  V  +++NR YE     RDK ++  
Sbjct: 57  ALGKSLNQQGLSLVLRKGSP----QEIILELVSQYGVESVYWNRCYEPPVFARDKKIKLA 112

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R +  +SF+ ++L  P +I N     +KV+TP+ K   Q L       L +      
Sbjct: 113 LGEREIKAQSFNGNLLHEPWAIKNKNGDFFKVFTPYWKQCRQIL--NIPSPLMLTKRPRG 170

Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +T  +I ++   P           +  GE+ A   L +F    +  Y   RD PA   
Sbjct: 171 IEITSDDIDKWKLLPAINWAARFSEYWTPGEKGAQKKLDEFIIHHLSGYKRDRDFPAKNA 230

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G +SP     R  E          +    +L+EL WREF  +L+  +P +
Sbjct: 231 TSRLSPHLHFGEISPW-VILRALELTKLEQTCDLASVEHFLSELGWREFSVYLLYHFPKL 289

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                F    +   W  D  LL  W++G TG+P+IDA MR+L   G+MHNR+RMI ASFL
Sbjct: 290 DCEN-FRNEFDAFPWQNDEQLLTRWQKGMTGYPLIDAGMRELWATGYMHNRVRMIVASFL 348

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDLL+DWR+G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP +Q ++FDP 
Sbjct: 349 TKDLLIDWRLGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPD 408

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           G +IR W+PEL  + +Q IH P +    + + L   YP PI++H++A    L+ Y   KK
Sbjct: 409 GVYIRQWIPELAQLNSQSIHQPWTDASASSIFLGNKYPKPIINHQEARTKALSYYQQIKK 468


>gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 483

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 163/491 (33%), Positives = 258/491 (52%), Gaps = 21/491 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    ++W R DLR+ DN+AL AA H S   +I ++I  P       + A Q+ +++
Sbjct: 2   AKDAAKPVILWFRKDLRLDDNQALTAA-HRSGRPIIPLYIGEPAAAGTGPLGAAQAWWLH 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + +SL ++             +++E L ++  +     +F+NR+Y+   +  D  
Sbjct: 61  HSLEALNRSLQKRHGRLVLASG----EALEVLRAFIKESGAEAVFWNRRYDPAGISIDAR 116

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           ++  L +  +  +SF   +L  P  ++      Y+VYTPF +AL            P   
Sbjct: 117 IKHELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGDEPEPPLEAPAEL 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              +   T   +  +   P +         ++  GE+ A   L  F ++ +  Y E RD 
Sbjct: 177 RLTSQLPTSETLESWKLLPTKPDWAGDFVDLWTPGEEGAQQRLHAFVEDALEGYKENRDY 236

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA   TS LSP+L++G +SP + W+  +     +   P +    +  E+ WREF  HL+ 
Sbjct: 237 PARPATSMLSPHLALGEISPARIWDATRGLSQRV---PAADIVHFRKEIAWREFSYHLLF 293

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P +     +    + +EW  DS   +AW++G TG+PI+DA MRQL   GWMHNR+RMI
Sbjct: 294 HFPRLASAN-WNDRFDGLEWCNDSDDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMI 352

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+KDL++DWR GE +F   L+D D A+N   WQW A +G D+ P+FRIFNP +QG+
Sbjct: 353 VASFLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGE 412

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHT 470
           +FDP G +++ ++PEL  +  +YIH    AP S LD+  ++L   YP PIVDH  A +  
Sbjct: 413 KFDPNGDYVKTYVPELRELGAKYIHRPFEAPKSMLDEAGITLGQTYPRPIVDHASARNRA 472

Query: 471 LNQYYAAKKQS 481
           L  Y A +  +
Sbjct: 473 LAAYSATRDAA 483


>gi|121703429|ref|XP_001269979.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           clavatus NRRL 1]
 gi|119398122|gb|EAW08553.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           clavatus NRRL 1]
          Length = 586

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 172/490 (35%), Positives = 261/490 (53%), Gaps = 19/490 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ DN+AL  A       +  +I ++I +P+    H  S  +      +L Q
Sbjct: 96  VHWFKSDLRLHDNRALQMAYQTAKEHNIPLIGLYILSPQDLTAHLSSPARVDLTLRTLDQ 155

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ L++  I           D  + +   C +  V  +F N +YE++E+RR+  L +  
Sbjct: 156 LKRDLNELDIPLYMETQETRKDIPQRIIDLCQEWGVNNIFANLEYEVDELRREAKLVRMC 215

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSLP 178
               I  ++  D+ ++ PG++ +   + Y VY+P+ +A + +L +            S P
Sbjct: 216 AQNGIKFETAHDACVVTPGAVASQQGKQYAVYSPWYRAWLVHLRENPDCLELSEEPGSNP 275

Query: 179 VPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             A +    +  S +P      R  D   +    ++P GE  AL  L KF +E+V  Y +
Sbjct: 276 GNARKHFAKLFESEVPAAPENKRLSDEQRKYFGQLYPAGEHEALDRLEKFVEERVKDYAD 335

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R++   Q TS LSPY + G LS R      ++     L +   G  SW++E+ WR+FY+
Sbjct: 336 ARNMMFGQTTSILSPYFASGSLSARTAVVHARKANKGSLDRGDPGLASWISEVAWRDFYK 395

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  D +   AW +G TGFPI+DAAMRQ+    WMHNR
Sbjct: 396 HVLVHWPFICMNKCFKPEFTNLEWEYDENKFAAWCEGKTGFPIVDAAMRQMKHDAWMHNR 455

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 456 ARMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 515

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IR WLPEL  +    +H P++         N YP PI++H K+    L
Sbjct: 516 RQSERFDPDGEYIRKWLPELRGIKGSAVHEPYARGAGATAEKNGYPRPILEHSKSRAQAL 575

Query: 472 NQYYAAKKQS 481
            ++  A +  
Sbjct: 576 ERFKRASENG 585


>gi|27367890|ref|NP_763417.1| Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6]
 gi|27359463|gb|AAO08407.1|AE016813_159 Deoxyribodipyrimidine photolyase [Vibrio vulnificus CMCP6]
          Length = 471

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 205/476 (43%), Positives = 283/476 (59%), Gaps = 12/476 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVWLR DLR  DN AL  A   S  +V+A F+ATP QWR H ++  Q+  I   L 
Sbjct: 1   MAMKLVWLRRDLRSVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEK 125
            + + L+   I   Y +  ++  S   + ++  Q  V+++  NR+YE+NE  RD+  + +
Sbjct: 60  VLAEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVLNREYEVNERVRDEQLVNQ 119

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                +     +D  +  PG +LN     +KV+TPF+KA +++ V   +         + 
Sbjct: 120 LASSEIGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFVPPQIIKTSAAQPVVL 179

Query: 186 GPVTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                S++      F YP Q+ +  + +  Q     LR FC E+V  Y EQRD PA  GT
Sbjct: 180 PEALQSSLWHEQAPFSYPRQSSEE-WSVDSQQIRETLRHFCHEEVDRYHEQRDFPATAGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL+IG +S RQC  RL  +   L     +G   WL+ELIWREFY HL+ F P + 
Sbjct: 239 SVLSPYLAIGAISVRQCIARLYWQQSYL----SNGREVWLSELIWREFYHHLIHFEPKLV 294

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G+ F+ W + + W         W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL 
Sbjct: 295 KGQGFVEWEKHLLWPAKPDWFDRWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASFLT 354

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G
Sbjct: 355 KDLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFDPNG 414

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            F++HWLPEL  VP++++H P +W     + L+YP P+VDHK+    TL+ Y  AK
Sbjct: 415 EFVKHWLPELVEVPSKFVHQPWNW--PGHMQLDYPAPMVDHKQEREITLSLYTQAK 468


>gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
 gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
          Length = 481

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 168/482 (34%), Positives = 250/482 (51%), Gaps = 15/482 (3%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           +  +    +VW R DLRI DN AL  A  +S   V+ ++I   E      + A    ++ 
Sbjct: 8   SEASPGAVIVWFRKDLRIADNPALRHAA-DSGRPVVCLYILD-ETPGVRPMGAASLWWLD 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + + L + G      +      + + LD+   +   T + +NR Y+   V RD  
Sbjct: 66  KSLKSLAQELEKLGNRLVLRKG----VAADVLDALIAETGATGVVWNRLYDKASVDRDAT 121

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           ++ RL+   + C+SF+  +L  P ++ N + Q YKV+TP+ +A  Q+L    +   P   
Sbjct: 122 IKARLKEAGVDCQSFNAGLLNEPWTVQNGSGQPYKVFTPYWRAARQHLDDVTVEPAPKVL 181

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             L   V    +  +  +P +        ++  GE  A   L  F    +  Y E+RDIP
Sbjct: 182 RCLDKAVRSEPLAAWDLHPTRPDWSKGFDLWTPGEAGARARLDAFLSGPITGYGEKRDIP 241

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           +   TS+LSP+L  G + PRQ W   +    +    P + A  +L+EL WREF   ++  
Sbjct: 242 SAPATSRLSPHLHFGEIGPRQVWLAARNA-AEAGDIPTAEADKFLSELGWREFNHSILFH 300

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +   + F P  +   W KD    +AW +G TG+PI+DA MR+L T G+MHNR+RMI 
Sbjct: 301 WPQLP-ARNFKPEFDGFPWAKDHAAFEAWTRGETGYPIVDAGMRELWTTGFMHNRVRMIV 359

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL+K L++DWR GE +F   L+D DLA+N G WQW A +G D+ PYFRIFNP  QG++
Sbjct: 360 ASFLIKHLMIDWREGEAWFWDTLVDADLANNVGNWQWTAGSGADAAPYFRIFNPISQGEK 419

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           FDP+G ++R W+PEL  VP   IH P              Y  PIVDH KA    L  Y+
Sbjct: 420 FDPRGDYVRRWVPELKTVPDDVIHKPWERPLHLSPAARRIYAKPIVDHAKARERALEAYH 479

Query: 476 AA 477
           + 
Sbjct: 480 SL 481


>gi|114046742|ref|YP_737292.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7]
 gi|113888184|gb|ABI42235.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7]
          Length = 493

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 202/472 (42%), Positives = 276/472 (58%), Gaps = 17/472 (3%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           A    L+W R DLR+TDN+AL AAC        AK+ A++IATP QW  H ++  Q  FI
Sbjct: 8   AAKHALMWFRQDLRLTDNQALTAACDWVRQAPGAKLRAIYIATPSQWLSHDMAPIQIDFI 67

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              +  + + L+  GI F+  Q  +F +   +L SYC +  V ++F  R+ EINE +RD+
Sbjct: 68  QRHVNLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINEQKRDQ 127

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
                L   +     D+  LLPPG++LN +  MYKV+TPF +   +   +  +  L VPA
Sbjct: 128 A---CLDAGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREVAAKRAILPLAVPA 184

Query: 182 IRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   P  I     +PF +       +  GE  A  IL  F ++K   Y + RD PA
Sbjct: 185 PLGPMLPEPKPISFKERFPFTSKLTSSEQWAAGEGQAKRILTAFIQQKAQDYKQDRDFPA 244

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTS +SPYL++GVLSPRQC   L   F ++++   S   +WLNELIWREFYRHL+  +
Sbjct: 245 LEGTSVISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVAF 304

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +  G  F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ A
Sbjct: 305 PDLSKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVA 364

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF   L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++F
Sbjct: 365 SFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKF 424

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLN--YPLPIVDH 463
           DP G+FIR +LPEL +   + +H P      S  +   L  +  YP  IV+H
Sbjct: 425 DPDGSFIRKYLPELASWGIKRLHQPNMQKTPSLFEVQMLESDSAYPCAIVEH 476


>gi|75763261|ref|ZP_00743014.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489251|gb|EAO52714.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 478

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 164/487 (33%), Positives = 256/487 (52%), Gaps = 25/487 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M++    +V  + D R+ DN AL+ A  + +  V+ V+I          I +    +++ 
Sbjct: 1   MTMQKKIIVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQD----ETFSIGSAAKWWLHH 54

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +++ VQK L   G  F            E + S   Q  +T +++N  Y+ + ++ ++ +
Sbjct: 55  AIIDVQKQLKALGSTFIIRNGKT----QEEILSLIEQLDITAVYWNICYDPDRLQSNQKM 110

Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +  L+   +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +     
Sbjct: 111 KMMLEDKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKW 170

Query: 183 --RLTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              L   ++ S +      P+ + I+ ++   E+ A    +KF   K+  Y E RD P  
Sbjct: 171 GSSLPASLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 230

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFY 298
              S L+PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  Y
Sbjct: 231 NAHSMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHY 290

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P   + KP     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  A
Sbjct: 291 P-FTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVA 349

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK LL+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++F
Sbjct: 350 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 409

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLN 472
           D  G +IR W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L 
Sbjct: 410 DKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIELGNTYPLPVVDHKAARERALC 469

Query: 473 QYYAAKK 479
            Y + K+
Sbjct: 470 AYKSMKE 476


>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
          Length = 475

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 168/476 (35%), Positives = 253/476 (53%), Gaps = 17/476 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S +K++ +F   P     + ++  +  ++   L ++++
Sbjct: 6   LFWHRRDLRISDNMGLAAARKQS-SKIVGLFCLDPNILNSNEVAPARVTYMLGCLQELKE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQH 129
           S S+ G      +     + IE +    +  +VT +F+++  E     RD  +E+  L+ 
Sbjct: 65  SYSKIGSQLLIVRG----EPIEAIPQLAVALQVTGVFWHKDGEPYARERDGKVEQELLKQ 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRSLPVPAIR 183
            +   ++ D +L PP  IL  + + Y VYTPF K   Q            ++ L    I+
Sbjct: 121 GIAVTNYWDQLLHPPEDILTQSGKPYTVYTPFWKNWSQKPKLEVAEKLDRIQGLTAEEIK 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +       ++P   D  +     +    GE  A   L +F +  +  Y EQR+ PA++GT
Sbjct: 181 IAQETGVVSLPTGKDLGYYWDGELILTPGETAAREQLEEFSERAIAQYQEQRNFPAVEGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301
           S LSP L  GV+  R  W    E   +   +  ++   +W  EL WREFY+H +  +P +
Sbjct: 241 SLLSPALRFGVIGIRTVWQATLEATKNSYSEEVRANIETWQKELAWREFYQHALYHFPQL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            + +P+    +   W+ +    QAW +G TG+P++DAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 TV-EPYRQQFKDFPWDNNPEHFQAWCEGKTGYPMVDAAMRQLNETGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE+YFM +L DGDLASNNGGWQW+AS G D  P  RIFNP  Q K+FDP+
Sbjct: 360 TKDLIINWQWGEQYFMQKLCDGDLASNNGGWQWSASCGMDPKP-LRIFNPASQAKKFDPE 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           G +IR WLPEL+++ T+Y+       D      +YP PIVDH         +Y   
Sbjct: 419 GEYIRQWLPELSSIDTEYLVR-GKIPDDERERCDYPQPIVDHNLRQREFKRRYKEL 473


>gi|300957650|ref|ZP_07169842.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1]
 gi|300315627|gb|EFJ65411.1| FAD binding domain of DNA photolyase [Escherichia coli MS 175-1]
          Length = 395

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 211/396 (53%), Positives = 279/396 (70%), Gaps = 5/396 (1%)

Query: 85  SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP 144
            +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ L+  V+C+ FDDSV+LPP
Sbjct: 2   DDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALR-NVVCEGFDDSVILPP 60

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
           G+++    +MYKV+TPF+ A ++ L +     +  P +R +G + PS      +YP Q+ 
Sbjct: 61  GAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPSPSITL-NYPRQSF 119

Query: 205 DP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+LS  L+ G LSPRQC +RL
Sbjct: 120 DTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRL 179

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
             E    L         WLNELIWREFYRHL+ ++PS+C  +PFI WT++++W  +   L
Sbjct: 180 LAEQPQALDGGAGSV--WLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHL 237

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           QAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DG
Sbjct: 238 QAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDG 297

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           DLA+NNGGWQWAASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P
Sbjct: 298 DLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEP 357

Query: 444 HSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
             W  K  ++L+YP PIV+HK+A   TL  Y AA+K
Sbjct: 358 WKWAQKAGVTLDYPQPIVEHKEARVQTLAAYEAARK 393


>gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
 gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
          Length = 484

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 166/489 (33%), Positives = 247/489 (50%), Gaps = 26/489 (5%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A +  S  L+W R DLR+ DN AL AA       V+AV+I   E             +++
Sbjct: 7   AMSNASPTLLWFRRDLRLADNPALTAAVRRG-RPVVAVYILDDEDAGDWASGGASRWWLH 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL ++ +SL  +G      + +    +   LD    +     +++NR YE     RD+ 
Sbjct: 66  HSLERLAESLRGRGSRLILRRGA----AAAVLDRLISETGAEAVYWNRCYEPWATARDQA 121

Query: 123 LEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--V 179
           ++  L+ R    +SF+ S+L  P  I +     Y+V+TPF KAL       DL   P  +
Sbjct: 122 IKASLRLRGHEVRSFNASLLREPWEIASKVGGPYRVFTPFWKALRAMGDPGDLLPTPDRI 181

Query: 180 PAIRLTGPVTPSNIPRF----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           P + +       +         D+ F  +   +  GE  A   L  F       Y ++R+
Sbjct: 182 PTLEVAPASDDIDAWALTPSKPDWAF-GLRAAWKPGEAAARQRLEAFLDGAAPEYAKRRN 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P   GTS+LSP+L  G + PRQ W+        +          +L+E+ WREF  HL+
Sbjct: 241 FPGTNGTSRLSPHLHFGEIGPRQIWHAASFHHTGM------ATDQFLSEIAWREFSHHLL 294

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +    P  P     +W+ D   L AW+ G TG+PI+DA MR+L   GWMHNR+RM
Sbjct: 295 FHFPMLPTT-PLRPEFADFQWSDDPGALAAWRHGMTGYPIVDAGMRELWATGWMHNRVRM 353

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFLVKDLL+ W++G  +F   L+D DLASN+  WQW A  G+D+ P+FR+FNP++QG
Sbjct: 354 IVASFLVKDLLLPWQVGARWFWDTLVDADLASNSASWQWVAGCGSDAAPFFRVFNPSLQG 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469
            +FDPQGT++R W+PE+  +P   IH P              L  +YPLPI+DH+ A   
Sbjct: 414 AKFDPQGTYVRRWVPEIAGLPDSIIHKPSDARLIDLSDAGIRLGHDYPLPIIDHRAARDR 473

Query: 470 TLNQYYAAK 478
            L  + + +
Sbjct: 474 ALTAFRSLR 482


>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
 gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
          Length = 481

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/478 (35%), Positives = 245/478 (51%), Gaps = 17/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L  A   S +KV+ +F        +  I+  +  ++   L ++Q+
Sbjct: 6   LFWHRKDLRISDNVGLAKARQES-SKVVGIFCFDSNILERDDIAPARIAYLLGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G    + Q          +           +F+N   E    RRD+ + + L+ +
Sbjct: 65  TYQKLGSNLLFIQGEPSH----IIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQ 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRSLPVPAIR 183
            I  +++ D +L  PG I+  + + YKVYTPF K               +L  L    + 
Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLENLEGLTQTELE 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               V   ++P   +  ++   P+    GE  A   L  FC   +  Y EQR+ PAI+GT
Sbjct: 181 QAKTVKIIDLPTVKELGYRWDYPLILSPGETAAAERLDYFCDAAINEYQEQRNFPAIEGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301
           SQLSP L  GV+  R  W    +   +      +    +W  EL WREFY+H + F+P +
Sbjct: 241 SQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWREFYQHCLYFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+    +   W+ +  L QAW  G TG+PI+DAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 AEG-PYREDFQDFPWDNNEVLFQAWCDGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE+YFM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++FDP 
Sbjct: 360 TKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPD 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
             +IR WLPEL ++ T+ +           LS  YP PIV+H +       +Y   K+
Sbjct: 419 ADYIRQWLPELRSLDTEVLVTGKISPLDC-LSCGYPQPIVNHNQQQREFKRRYSQVKQ 475


>gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
           centenum SW]
 gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
           centenum SW]
          Length = 489

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 165/492 (33%), Positives = 240/492 (48%), Gaps = 25/492 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             +  LVW R DLR+ DN AL  A   S   V+ VF+   +             +++ SL
Sbjct: 2   RATPILVWFRQDLRLADNPALSDAAR-SGRPVVPVFVLDDDTPGGWRPGGASRWWLHHSL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + +SL+  G      +          +     +     + +NR YE     RD  L+ 
Sbjct: 61  ASLSRSLATAGSPLVLRRGRADV----AIGELVRETGAGTVLWNRCYEPWATERDSRLKA 116

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   V  KSF+ S+L  P ++   A + Y+V+TPF +A+  +    +  + P    RL
Sbjct: 117 DLRAAGVEVKSFNGSLLREPMTVRTAAGEPYRVFTPFWRAVSSSPDWPEPLAAPD---RL 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             P T         +      P         +  GE      LR F +     Y E RD 
Sbjct: 174 EAPPTAPASDPLESWGLLPTTPDWAGGLRQAWQPGEAAVAARLRAFLEGAAADYAEGRDR 233

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLM 295
           P   GTS+LSPYL  G +SPRQ W   ++  +     + +  A S+L EL WREF  +L+
Sbjct: 234 PGSDGTSRLSPYLHFGEISPRQVWAATRDAMLSGNPPEHRRHAESFLRELGWREFCYNLL 293

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +   +P  P  E   W  DS  L +W++G TG+PI+DA MRQL T GWMHNR+RM
Sbjct: 294 YHFPKLPE-RPLNPRFEDFPWQPDSAALDSWQRGRTGYPIVDAGMRQLWTTGWMHNRVRM 352

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I  SFLVK LL+ W+ G+ +F   L+D DLA+N  GWQW A  G D+ PYFR+FNP +QG
Sbjct: 353 IVGSFLVKHLLLPWQEGQRWFWDTLVDADLANNAAGWQWIAGCGADAAPYFRVFNPVLQG 412

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469
            +FDP G ++R W+PEL  +P   IH P +   +        L  +YP P ++HK+    
Sbjct: 413 GKFDPDGRYVRRWVPELAALPDTLIHQPWTATAETLRRAGIRLGTDYPAPCIEHKRGRDR 472

Query: 470 TLNQYYAAKKQS 481
            L  +   ++  
Sbjct: 473 ALAAFATLRQAG 484


>gi|229030832|ref|ZP_04186854.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
 gi|228730481|gb|EEL81439.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
          Length = 476

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 161/480 (33%), Positives = 247/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      + +      E + S   Q  +T +++N  Y+   ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGNT----QEEILSLIEQLGITAVYWNICYDPERLQSNQKMKMMLEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IRLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + I+ M+   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSKLHLLPTIPWTSHIESMWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S R  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLTVWQKGDTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLPIVDHK A    L  Y + KK
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQEANIQLGHTYPLPIVDHKAARERALCAYKSMKK 474


>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
 gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
          Length = 484

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 174/484 (35%), Positives = 251/484 (51%), Gaps = 18/484 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ D+ AL+AA    D  +I V+I          +  ++ H  ++++  +
Sbjct: 2   TAIVWFRRDLRLHDHAALHAAMLTGD-PIIPVYIVEDSLCLSAAVGDKRLHAHFSAIAAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
             +L Q G      +     +  + L     +    KLF+NR Y  +  +RD+L+ + L 
Sbjct: 61  DDALVQLGGRLLIRRG----EPQQVLCQLAQETGAEKLFFNRDYTPDARKRDELVSEVLS 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-----LPVPAI 182
           +H V   +  D VL  PG I+      Y V+TP+R+                  L     
Sbjct: 117 RHGVFVHACKDLVLHEPGEIMTKQRTPYAVFTPYRRVWQTLPKDRPFPQPTEWILFDRLK 176

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            L     P+      + P      M   GE+ A   L++F    +Y Y E+RD+P +  T
Sbjct: 177 ELPSEPVPTVEAFGRNRPMGTEWEMEQFGERAARKRLQQFLDRDIYTYKEKRDMPGVNAT 236

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS  L+ G LS R  ++R++E       +  +   ++L ELIWREFY+ ++ F+P   
Sbjct: 237 SRLSFALNAGTLSIRTVYHRVQEVLASARGEQVTSIEAFLTELIWREFYQQVLYFHPH-T 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               ++P  E++ W     L   W QG TG+PI+DAAM+QLN  GWMHNRLRMITASFL 
Sbjct: 296 TNHAYLPQFEEVAWENKKDLFVRWCQGETGYPIVDAAMKQLNETGWMHNRLRMITASFLT 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLLVDWR G  YF  QL+D D A+N GGWQW+ASTG D+ PYFRIFNP  QG++FD  G
Sbjct: 356 KDLLVDWRWGMAYFAQQLIDFDEAANIGGWQWSASTGTDAQPYFRIFNPVTQGEKFDRDG 415

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            F++ +LP L  VP QYIH P    +         +  +YPLP VDH +     +  +  
Sbjct: 416 VFVKKYLPVLREVPLQYIHKPWDMPEHIQEQAGCKIGFDYPLPCVDHAQRRKLAMALFQE 475

Query: 477 AKKQ 480
           AK +
Sbjct: 476 AKDR 479


>gi|113969509|ref|YP_733302.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4]
 gi|113884193|gb|ABI38245.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4]
          Length = 493

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 202/472 (42%), Positives = 276/472 (58%), Gaps = 17/472 (3%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           A    L+W R DLR+TDN+AL AAC        AK+ A++IATP QW  H ++  Q  FI
Sbjct: 8   AAKHTLMWFRQDLRLTDNQALTAACDWVRQVPGAKLRAIYIATPSQWLSHDMAPIQIDFI 67

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              +  + + L+  GI F+  Q  +F +   +L SYC +  V ++F  R+ EINE +RD+
Sbjct: 68  QRHVNLLAQGLASLGIEFELIQLDSFKEVPAFLASYCEKLGVERVFAGREPEINEQKRDQ 127

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
                L   +     D+  LLPPG++LN +  MYKV+TPF +   +   +  +  L VPA
Sbjct: 128 A---CLDVGIPLVLSDEHCLLPPGTVLNLSGDMYKVFTPFSRKWREVAAKRAILPLAVPA 184

Query: 182 IRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   P  I     +PF +       +  GE  A  IL  F ++K   Y + RD PA
Sbjct: 185 PLGPMLPEPKPISFKERFPFTSKLTSSEQWAAGEGQAKRILTAFIQQKAQDYKQDRDFPA 244

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GTS +SPYL++GVLSPRQC   L   F ++++   S   +WLNELIWREFYRHL+  +
Sbjct: 245 LEGTSVISPYLALGVLSPRQCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVAF 304

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +  G  F    + ++W  +     AW +G TG+PI+DAAMRQLN  GWMHNRLRM+ A
Sbjct: 305 PDLSKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVA 364

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF   L+DGDLA+NNGGWQW+A  G D+ PYFRIFNP  Q ++F
Sbjct: 365 SFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKF 424

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAP-----HSWLDKNDLSLN--YPLPIVDH 463
           DP G+FIR +LPEL +   + +H P      S  +   L  +  YP  IV+H
Sbjct: 425 DPDGSFIRKYLPELASWGIKRLHQPNMQKTPSLFEVPTLESDSAYPYAIVEH 476


>gi|85115208|ref|XP_964834.1| hypothetical protein NCU08626 [Neurospora crassa OR74A]
 gi|130155|sp|P27526|PHR_NEUCR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|3054|emb|CAA41549.1| deoxyribodipyrimidine photolyase [Neurospora crassa]
 gi|28926629|gb|EAA35598.1| hypothetical protein NCU08626 [Neurospora crassa OR74A]
          Length = 642

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 175/498 (35%), Positives = 254/498 (51%), Gaps = 33/498 (6%)

Query: 11  LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A      +   +I +++ +PE    H  +  +  F+  +L  
Sbjct: 138 VHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLEV 197

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L   GI           +    +         + LF   +YE++E+RR+  L K L
Sbjct: 198 LKTDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYEVDELRREAKLVKLL 257

Query: 128 QHR-----VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
                   +      D+ ++ PG++ + +   Y VY+P+ +A I+++ +           
Sbjct: 258 AEGEKGEKMAADVVHDTCVVMPGALQSGSGGQYAVYSPWFRAWIKHIEENPECLEIYEKP 317

Query: 183 RLTGPVTPSNIPRFF--------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
               P T       F              D        ++P GE  AL  L KFC E + 
Sbjct: 318 GPNPPGTKEKHENLFACSIPEAPEGKRLRDDEKARYHSLWPAGEHEALKRLEKFCDEAIG 377

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIW 287
            Y E+R+IPA+QGTS LS + + G LS R      ++      L     G   W++E+ W
Sbjct: 378 KYAERRNIPAMQGTSNLSVHFASGTLSARTAIRTARDRNNTKKLNGGNEGIQRWISEVAW 437

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+FY+H++  +P VCM KPF P    IEW+ +     AW QG TGFPIIDAAMRQ+ + G
Sbjct: 438 RDFYKHVLVHWPYVCMNKPFKPTYSNIEWSYNVDHFHAWTQGRTGFPIIDAAMRQVLSTG 497

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRMI ASFL KDLLVDWR+GE YFM  L+DGD ASNNGGW +AAS G D  PYFR
Sbjct: 498 YMHNRLRMIVASFLAKDLLVDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFR 557

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVP------TQYIHAPHS----WLDKNDLSLNYP 457
           +FNP +Q ++FDP G +IR W+ EL ++P         IH P+      + K      YP
Sbjct: 558 VFNPLLQSEKFDPDGDYIRKWVEELRDLPELKGGKGGEIHDPYGRGSEKVKKKLEEKGYP 617

Query: 458 LPIVDHKKACHHTLNQYY 475
            PIV+H  A    L+ Y 
Sbjct: 618 RPIVEHSGARDRALDAYK 635


>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
 gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
          Length = 479

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 184/482 (38%), Positives = 251/482 (52%), Gaps = 20/482 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++ W R DLR+ DN AL AA   +   V+ VFI      R    S  ++ F+   L  +
Sbjct: 1   MYIHWFRRDLRLRDNTALMAAATAAGGAVVPVFIFDDAILRGRFASPARTQFLLDCLAAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L   G+     +        + L     +   + + +NR Y    VRRD  +++ L+
Sbjct: 61  DAELRTFGLHLVVRRGDPLRTLFDVL----RESGASGVTWNRDYTPYAVRRDTAIKQALR 116

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                  SF D+V+     +     + Y VYTP+ K     L    +    +P +     
Sbjct: 117 EAGYEAHSFKDTVIFEMKEVATADGRPYTVYTPYAKRWRSRLAAEPVTVQDMPRLATIPL 176

Query: 188 VTPSNIPRFFDY--PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                +P   D      A  P FP GE  AL  L +F +  +  Y + RD+ A+ GTS+L
Sbjct: 177 PVSEPLPHLTDLLPDAPATLPRFPAGEAVALEALERFVRGPLASYAQGRDLMAVAGTSRL 236

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL +GVLSPRQC             +      SW+ ELIWR+FY  ++  +P    G 
Sbjct: 237 SPYLRLGVLSPRQCVAAALAAPPGPGPE------SWIGELIWRDFYVQVLYHFPHALRG- 289

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P   +I+W  D  L  AW+QG TG+PI+DAAMRQL   GWMHNR RMI ASFL KDL
Sbjct: 290 SFKPAYNRIDWPNDPVLFAAWQQGLTGYPIVDAAMRQLQREGWMHNRARMIVASFLTKDL 349

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGD A+NNGGWQWAA TG D+ P+FRIFNP  QG++FDP+G ++
Sbjct: 350 LIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPFFRIFNPVSQGQKFDPEGAYV 409

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R ++PEL NVPT+YIH PH             +  +YP PIVDH       L  Y AA +
Sbjct: 410 RRYVPELVNVPTRYIHEPHKMSLAEQRKAGVLIGRDYPAPIVDHATQRTKALELYRAATR 469

Query: 480 QS 481
            +
Sbjct: 470 HN 471


>gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 476

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 252/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ +++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYD----ETFSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +     +E + S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLETLGSTLIIRKGNT----LEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVNK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474


>gi|46446306|ref|YP_007671.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399947|emb|CAF23396.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25]
          Length = 471

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 165/480 (34%), Positives = 255/480 (53%), Gaps = 27/480 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVF--IATPEQWRQHGISARQSHFIYASL 65
           +  +VW R D R+ DN AL AA       VI VF  +  PE  ++  +      ++Y SL
Sbjct: 3   NPSIVWFRQDFRLEDNPALNAATQKG-GPVIPVFNWVFNPE--KEWQLGGASQWWLYYSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + ++  LS+ G+     +    +D ++ L     +     +++NR+YE   ++ D  ++ 
Sbjct: 60  ISLKNDLSELGLSLIIRK----EDPLKSLLEIAHETGADTVYWNRRYEPMLIQDDAKIKT 115

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            LQ + I   SF+ ++L  P +I N   + ++V+TPF    ++         +P    + 
Sbjct: 116 ELQKQGIKAHSFNGNLLFEPWTIANKQGKPFQVFTPFWNQCLKLNDPEVPLPVPHSLKKF 175

Query: 185 TGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            G +   +I      P     + +  ++  G ++A  +L+K     +  Y++ RD+P   
Sbjct: 176 VGQLQTESIDSLNLLPKIKWDKGLKEVWSPGAKSAKALLKKGLTGVIDQYLDIRDLPDHD 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LSPYL  G +SPR  W  +KE           GA  +L ++ WREF  HL+  +P 
Sbjct: 236 GTSLLSPYLHFGEISPRMIWQAVKENST------SKGAEGYLRQIGWREFAHHLLYHFPE 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               KP         W  D   L+AW++G TG+PIIDA MRQL  IGWMHNR+R+I  SF
Sbjct: 290 TP-QKPLRSQFNSFSWKNDKQNLKAWQKGQTGYPIIDAGMRQLWKIGWMHNRVRLIVGSF 348

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDL++ W  G ++F   L+D DLA+N  GWQW A  G D+ PYFRIFNP  QG++FDP
Sbjct: 349 LVKDLMIHWIEGAKWFWDTLVDADLANNTMGWQWIAGCGADAAPYFRIFNPITQGEKFDP 408

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQY 474
           +G +++ W+PEL N+P +++H P    ++       +L +NYP PIV+H KA    L  Y
Sbjct: 409 EGNYVKKWVPELINLPKEWLHQPWEAPEEILRQSGIELGINYPKPIVNHAKAREEALQAY 468


>gi|320158160|ref|YP_004190538.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O]
 gi|319933472|gb|ADV88335.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O]
          Length = 469

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 205/474 (43%), Positives = 286/474 (60%), Gaps = 12/474 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLR DLR  DN AL  A   S  +V+A F+ATP QWR H ++  Q+  I   L  +
Sbjct: 1   MKLVWLRRDLRSVDNTALNHAIATSQ-EVVACFVATPLQWRDHHMAPMQADLIARRLAVL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRL 127
            + L+   I   Y +  ++  S   + ++  Q  V+++ +NR+YE+NE  RD+  + +  
Sbjct: 60  AEELNALNIPLLYDEVDDYAQSATRVANWAEQLAVSEVVFNREYEVNERVRDEQLINQLA 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTG 186
              +     +D  +  PG +LN     +KV+TPF+KA +++ V   + ++     + L  
Sbjct: 120 SSEMGVLDVEDKCVQAPGCVLNKQGDYFKVFTPFKKAWLKSFVPPQIIKTSAAQPVVLPE 179

Query: 187 PVTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + PS       F YP ++ +  + +  Q     LR FC E+V  Y EQRD PA  GTS 
Sbjct: 180 ALQPSLWHEQAPFSYPRESSE-AWSVDSQQIRETLRHFCHEEVDRYHEQRDFPATAGTSV 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+IG +S RQC  RL  +   L     +G   WL+ELIWREFY HL+ F P +  G
Sbjct: 239 LSPYLAIGAISVRQCIARLYWQQSYL----SNGREVWLSELIWREFYHHLIHFEPKLVKG 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F+ W + + W       + W +G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 295 QGFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKD 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L V+WR+GE+YFM +L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G F
Sbjct: 355 LHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFDPNGEF 414

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++HWLPEL  VP++++H P +W     + L+YP P+VDHK+    TL+ Y  AK
Sbjct: 415 VKHWLPELAQVPSKFVHQPWNW--PGHMQLDYPAPMVDHKQEREITLSLYTQAK 466


>gi|312211251|emb|CBX91336.1| hypothetical protein [Leptosphaeria maculans]
          Length = 811

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 176/494 (35%), Positives = 258/494 (52%), Gaps = 22/494 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           T+    + W + DLR+ DN  L  A      ++  VI V+I +P+ W  H +S  +  F 
Sbjct: 311 TSGDAVIHWFKRDLRLRDNTGLSKAYELAKENNIGVIGVWIMSPQDWEAHLVSPAKCDFE 370

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120
             S+  + K L++  I       S   +    +     +  V  ++ N +YE +E+RR+ 
Sbjct: 371 LRSVEALSKELNELDIPLHIETVSRRKEVAYRMVELAQEWNVKNVYCNLEYEPDELRREE 430

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------- 173
           +L+   LQ  +      D  ++PPGS+     + Y VY+P+ ++ + +L           
Sbjct: 431 RLVRLMLQKGINFDPQHDDCVVPPGSLKTGGGKQYAVYSPWFRSWLAHLHAHPHLLNERT 490

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEK 226
                P         +  S IP   +      D       ++P GE  A+  LR+F  EK
Sbjct: 491 MPEKNPSGFRERFAKLFDSTIPELPESKSLTEDQRKQFHHLWPAGEAAAIERLRRFLTEK 550

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNEL 285
           V  Y + R+ P +  T ++S + + G L+ R      ++      L   K G   W++E+
Sbjct: 551 VAKYNDTRNFPNLNSTGRVSAHHAAGTLAARTSVRLARDMNTSKKLDGGKDGIKVWISEV 610

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR+FYRH++  +P VCM KPF      IEW  +    ++W QG TG+PI+DAAMR LN 
Sbjct: 611 AWRDFYRHVLVHWPYVCMNKPFKYEYTNIEWEYNDPHFRSWTQGKTGYPIVDAAMRSLNQ 670

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
             +MHNRLRMITASFL K LL+DWR+GE+YF+S L+DGD ASNNGGW ++ASTG D  PY
Sbjct: 671 TAYMHNRLRMITASFLAKHLLLDWRLGEQYFISHLIDGDFASNNGGWGFSASTGVDPQPY 730

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVD 462
           FRIFNP +Q ++FD +G FIR W+PEL  V    IH P++   K         YP PIV+
Sbjct: 731 FRIFNPWLQSEKFDAEGDFIRKWVPELQGVEGAAIHNPYAAGGKAAQIAKKNRYPEPIVE 790

Query: 463 HKKACHHTLNQYYA 476
           HK A    L +Y A
Sbjct: 791 HKFARERCLARYKA 804


>gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
 gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
          Length = 479

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 167/482 (34%), Positives = 256/482 (53%), Gaps = 19/482 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+D+K L AA     ++V+ VF   P    Q  ++  +  ++   L ++QK
Sbjct: 6   LFWHRRDLRISDHKGL-AAAREKSSQVVGVFCLDPNILDQDDVAPARVTYMIGCLQELQK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
              + G      Q          +           +++N   E     RD+ + + L+  
Sbjct: 65  QYEKVGSQLLILQGQPS----SAIPKLAKALEAKAVYWNLDVEPYAKDRDQQVSEALKEV 120

Query: 130 RVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRS-------LPVPA 181
            +  ++  D +L  P  I    A + YKVYTP+     +   Q  + +       L    
Sbjct: 121 NIGVETVWDQLLHTPDEIRTKSANEPYKVYTPYWNNWSKRKKQKPIHTFSENPTGLTEKQ 180

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           +++       ++P   D  F   + +    GE+ A + L +FC   ++ Y EQR+ PA  
Sbjct: 181 LKIAKENGIIDLPLAEDLGFVWENELILEPGEEAAQNRLEEFCDRALFEYDEQRNFPAND 240

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAFYP 299
           GTSQLS  L  GV+S R  W +  E   +    + ++   +W  EL WREFY+  M  +P
Sbjct: 241 GTSQLSAALKFGVISIRTVWAKTVEAMENTRSDEARNNIKAWQQELAWREFYQQAMYHFP 300

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +  G P+    +   W+++    QAW +G TG+PI+DAAMRQLN IGWMHNR RMI A+
Sbjct: 301 ELANG-PYRDHFKDFPWSENQEHFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVAN 359

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNPT Q +++D
Sbjct: 360 FLTKDLMINWQWGEKYFMQKLMDGDLSANNGGWQWSASSGMDPKP-LRIFNPTTQAQKYD 418

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P+G +IR WLPEL+++ T+Y+        K+  + +YP PIVDHK+      + Y   K+
Sbjct: 419 PEGEYIRQWLPELSSLDTEYLVT-GKISSKDREACDYPEPIVDHKQQQQQFKSLYKEQKE 477

Query: 480 QS 481
            S
Sbjct: 478 AS 479


>gi|167031795|ref|YP_001667026.1| deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1]
 gi|166858283|gb|ABY96690.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas putida GB-1]
          Length = 475

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 192/476 (40%), Positives = 271/476 (56%), Gaps = 7/476 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL WLR+DLRI DN AL AA        IA+++ +P QW+ H  +A +  F   +L  +
Sbjct: 1   MHLTWLRSDLRIDDNTALSAATERG--PTIALWLVSPGQWQAHDDAACKVDFWLRNLRAL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL    I     +   +D + + +   C Q +V  + +N +Y INE +RD      L+
Sbjct: 59  RQSLEGLNIPLLIRKIDTWDQAPQAVLDVCRQHQVQSVHWNEEYGINEQQRDDATRALLE 118

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVPAIRL 184
              +   S  D +L  PG+IL  +   ++V++ F+K  +++L ++     R +   A   
Sbjct: 119 KSSIQACSHLDQLLFRPGTILTRSGDYFQVFSQFKKTCLEHLHRSLPALARRVERQAPLQ 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                       F+ P +A+   +P GE  A   L +F  E +  Y + RD+PA  GTSQ
Sbjct: 179 IQSDPIPQHVDGFETPTRALREHWPAGEAEAQARLSRFLDETIDEYQQLRDLPAKHGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +              +G  +W+NEL+WREFY+H++  YP V   
Sbjct: 239 LSTYLAAGVISPRQCLHGALASNRGEFDSGSTGVQTWINELLWREFYKHILNGYPQVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W      L+AWKQG TGFPIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRAHTEALPWRDAPADLEAWKQGRTGFPIIDAAMRQLLHTGWMHNRLRMVVAMFLSKN 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +FM  L+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q +RFDPQG F
Sbjct: 359 LLIDWRKGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPVSQSQRFDPQGRF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IRHWLPEL ++  + IH P    D    + +Y  P+V    +    L  +    ++
Sbjct: 419 IRHWLPELRDMDEKTIHEPMK-SDDLFANNSYHRPMVILGSSRQRALEAFKGLPRR 473


>gi|256823595|ref|YP_003147558.1| Deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069]
 gi|256797134|gb|ACV27790.1| Deoxyribodipyrimidine photo-lyase [Kangiella koreensis DSM 16069]
          Length = 459

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 186/468 (39%), Positives = 263/468 (56%), Gaps = 14/468 (2%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             +++LVW RNDLR+ DN AL+ A       VI +++   EQ   H  +  +  FIY S+
Sbjct: 2   RKNINLVWFRNDLRVGDNPALFYAAE--QGAVIGIYLEPVEQREAHDDAPCKIGFIYDSV 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +++K L++  I     +  ++  S+E +     Q     +++N +Y  NE  RD  LEK
Sbjct: 60  NELRKKLNKLNIPLHSFKVKDYQQSVEKIVQLVEQYNTDGVYFNNEYPFNERNRDDELEK 119

Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             L      K FD  V++PP S+     + YKV+TP++K+ I+      +  LP+P+ + 
Sbjct: 120 VLLGKGKEVKRFDGDVIIPPNSVSTGKGEPYKVFTPYKKSWIEFHKTQGISPLPIPSKQD 179

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                  +    +D+       ++P GE  A   L++F   K  YY E RDIPA++GTS 
Sbjct: 180 FKIEKQHD----YDFGHDYRKDLWPAGELAAQDRLKEFLP-KAGYYKEHRDIPAVKGTSM 234

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G +S +QC   L E +     +      +WL+E+IWREFYR ++   P +   
Sbjct: 235 LSPYLTVGAISAKQCIESLLEWYE--GDQEAFYLDTWLSEIIWREFYRQIIIDNPQISYH 292

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            PF    +++ WN    L + W Q  TGFP+IDAAMRQL   GWMHNRLRM  A FL K 
Sbjct: 293 LPFKKDAKEV-WNGQHELFEKWCQAETGFPLIDAAMRQLIQTGWMHNRLRMNVAMFLNKL 351

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
            L+DWR GE +FM  L+DGD ASNNGGWQW +STG D  PYFRI +P  Q +RFDPQG F
Sbjct: 352 CLIDWREGEAFFMRHLIDGDFASNNGGWQWCSSTGADGAPYFRIMSPITQSQRFDPQGKF 411

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           IR  +PEL ++  + IH P S   K    L YP PI+D+K+A    L 
Sbjct: 412 IRKLVPELASLNNKDIHFPTSQQRKE---LGYPEPIIDYKEARKAALA 456


>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
 gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
          Length = 518

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 168/485 (34%), Positives = 256/485 (52%), Gaps = 19/485 (3%)

Query: 5   TAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           ++M+   + W R DLR++DN  L  A  +S +K++ +F    +   Q  ++  +  ++  
Sbjct: 41  SSMTNSVIFWHRRDLRVSDNIGLSKAYQHS-SKLVGLFCLDTDILNQDNVAPARITYMLG 99

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L  +++S  Q G      Q +      +  D+     +V  +F+N   E    +RD  +
Sbjct: 100 CLQDLRESYQQLGGQLLIFQGNPTQIIPQVADAL----KVDCVFWNNDVEPYSKKRDNQV 155

Query: 124 EKRLQHRVIC-KSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQA------DLR 175
            + LQ R I  +++ D +L  PG IL  +    YKVYTPF ++ ++            L 
Sbjct: 156 IEALQERGIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIAQALGKLE 215

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQR 234
           SL    I     +   ++P   D  +    P+    GE  A   L  FC   +Y Y EQR
Sbjct: 216 SLSEEEINTVKNLGIIDLPTAKDLGYSWDAPLILEPGETAAKEQLNYFCDSLIYNYQEQR 275

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRH 293
           + P I GTS LSP    GV+  R+ W      + +    + +    +W  E+ WREFY+H
Sbjct: 276 NYPGINGTSTLSPAFKFGVIGIREVWQATLSAYENTYSDEARENIQTWQQEIAWREFYQH 335

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            M F+P +  G P+    +   W+ +    QAW +G TG+PI+DAAMRQLN  GWMHNR 
Sbjct: 336 CMYFFPELATG-PYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRC 394

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  
Sbjct: 395 RMIVASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPAS 453

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q +++DP G +IR W+PE++++ T+Y+        +   S  Y  PIVDHK+       +
Sbjct: 454 QAQKYDPDGEYIRLWVPEISSLDTEYLVTGKIPPLEAH-SCGYLQPIVDHKQQQREFKER 512

Query: 474 YYAAK 478
           Y   K
Sbjct: 513 YKQIK 517


>gi|315123469|ref|YP_004065475.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp.
           SM9913]
 gi|315017229|gb|ADT70566.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas sp.
           SM9913]
          Length = 464

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 181/468 (38%), Positives = 270/468 (57%), Gaps = 9/468 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L W R DLR+  N+AL  A +N     I  F    +QW QH  +  Q   +   +  ++
Sbjct: 3   TLFWFRRDLRLFSNEALIEALNNGAKHTI--FFVCEKQWAQHNTAPIQIDLLKRRVSYIR 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           + L++ GI     +   F D    L  +C Q  +  +  N++YE+NE  RDK ++ +  Q
Sbjct: 61  EKLAEYGINLHVIEAPYFTDCQTKLLDFCQQYEIKHIIANKEYELNEFNRDKAIQAQCDQ 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            ++    ++  ++ P GS+     +MYKV+TPF++A ++         +  P        
Sbjct: 121 QQITFTLYEGDIIAPVGSVRTQNNEMYKVFTPFKRAWLKQYQDTHFSLVSWPL-----SS 175

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P +I              +P+ +     ++  F  +K+  Y + RDIP+++GTS LSPY
Sbjct: 176 NPIDIESCELLSSDDSSKKWPVDDDTLASVVDNFIHDKLASYDDVRDIPSVKGTSGLSPY 235

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L++GV+S +Q    +++++ D+L   KS  F+W+NELIWREFY+HL+A +P +  G  F 
Sbjct: 236 LALGVVSSKQLMVNIQQQYPDILTTSKSKTFTWVNELIWREFYKHLIAEFPKLSRGANFN 295

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              + + W  +    + W +G TG+P++DAAM+QL   GWMHNRLRM+ ASFL K LL+D
Sbjct: 296 EKYDSVAWRDNEAEFKLWCEGRTGYPLVDAAMQQLLQTGWMHNRLRMVVASFLTKHLLID 355

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE++FM  L+DGDLASNNGGWQWAASTG D+ PYFR+FNP  Q +RFDP G FIR +
Sbjct: 356 WRKGEQFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPITQSERFDPSGQFIRKY 415

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475
           LPEL  VP ++IH PH++L     S + Y   IVDHK A    L+ + 
Sbjct: 416 LPELEKVPDKHIHFPHTYLAATGQSEHCYWPAIVDHKAARARALDAFK 463


>gi|317052654|ref|YP_004113770.1| deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
 gi|316947738|gb|ADU67214.1| Deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
          Length = 469

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 195/467 (41%), Positives = 270/467 (57%), Gaps = 6/467 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWLRNDLRI+D +A   A       V+AVF     QW++H ++A +  F+  +L  +
Sbjct: 1   MNLVWLRNDLRISDQRA-LGAAAAEGGSVLAVFCLCQRQWQRHHMAAVRRDFLLRNLECL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L   GI      C +F    E L          +LF+N +Y I+E RRD  +E+  +
Sbjct: 60  RLQLQAVGIPLFVLDCHDFAAVPEALLKLARTTGARRLFFNEEYAIDEWRRDMAVERCFR 119

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                 +   D V++P G + +   + Y+V+TPF+KA ++ +V+      P P +     
Sbjct: 120 ENGMEVRRCCDHVVVPAGQLRSGRGECYRVFTPFQKAWLKLVVENPALLAPAPIVNTQPH 179

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             P +           +  ++P GE  A   L+ F    +  Y   RD PAI+GTS LSP
Sbjct: 180 PFPGDGAALPTDIPHPLAHLWPAGEAEAQRRLQAFLDGPIRRYHLDRDFPAIEGTSALSP 239

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+ GVLS RQC +   E    L      GA  WL+ELIWREF++H++  +P V   + F
Sbjct: 240 YLACGVLSIRQCVSAALE----LANGGSEGARVWLSELIWREFFQHILRAFPRVSTNRAF 295

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
              TE + W  D     AW +G TG+PI+DAAM QL++ GWMHNRLRMI A FL KDLL+
Sbjct: 296 QEHTETVAWRYDEGEFAAWCEGRTGYPIVDAAMAQLHSTGWMHNRLRMICAMFLTKDLLI 355

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YFM  L+DGDLA+NNGGWQWAASTG D+VPYFR+F+PT Q KRFDP G FIRH
Sbjct: 356 DWRWGERYFMEHLVDGDLAANNGGWQWAASTGTDAVPYFRVFHPTTQSKRFDPHGQFIRH 415

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +LP+L  +  +YIH PH        +++YP P+VDHK A    ++ +
Sbjct: 416 FLPQLAELDEKYIHEPHDSSGLLRPNIDYPRPMVDHKVARQRAIDAF 462


>gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
 gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
          Length = 476

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 252/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ +++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYD----ETFSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     + +E + S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKG----NILEEILSLIKQLGITAVYWNICYDPERLQFNQKVKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKVMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474


>gi|218246283|ref|YP_002371654.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
 gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
          Length = 481

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 170/478 (35%), Positives = 247/478 (51%), Gaps = 17/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L  A   S +KV+ +F        Q+ I+  +  ++   L ++Q+
Sbjct: 6   LFWHRKDLRISDNIGLAKARQKS-SKVVGIFCFDSNILEQNDIAPVRIAYLIGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G    + Q          +           +F+N   E    RRD+ + + L+ +
Sbjct: 65  TYQKLGSNLLFIQGEPSH----IIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQ 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ADLRSLPVPAIR 183
            I  +++ D +L  PG I+  + + YKVYTPF K                L  L    ++
Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLESLEGLTQTELQ 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               V   ++P   +  ++   P+    GE  A   L  FC   +  Y EQR+ PAI+GT
Sbjct: 181 QAKNVNIIDLPTVQELGYRWDYPLILSPGETAAAERLDYFCDAAINEYQEQRNFPAIEGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301
           SQLSP L  GV+  R  W    +   +      +    +W  EL WREFY+H + F+P +
Sbjct: 241 SQLSPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWREFYQHCLYFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+    +   W+ +  L QAW +G TG+PI+DAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 AEG-PYREDFQDFPWDNNEVLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE+YFM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++FDP 
Sbjct: 360 TKDLMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPD 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
             +IR WLPEL ++ T+ +           LS  YP PIV+H +       +Y   K+
Sbjct: 419 ADYIRQWLPELRSLDTEVLVTGKISPLDC-LSCGYPQPIVNHNQQQREFKRRYSQVKQ 475


>gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 476

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 253/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++   +      +      +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQDEDFL----MGEASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      +        E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + I+ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAYKSMKE 474


>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
 gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
          Length = 476

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 165/481 (34%), Positives = 254/481 (52%), Gaps = 18/481 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ + W R DLR++DN  L  A   S +K++ +F        +  I+  + +++   L  
Sbjct: 3   NIIIFWHRRDLRVSDNIGLSQAYQKS-SKLVGLFCLDSNLLNRDDIAPARVNYMLGCLQH 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QKS  + G      Q        +  D+      V  +F+N   E     RDK +++ L
Sbjct: 62  LQKSYQKLGSQLLIFQGEPTKIIPKVADAL----NVDCVFWNNDVEPYSKERDKQVKEAL 117

Query: 128 QHR-VICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQA------DLRSLPV 179
           + + +  K++ D +L  PG IL       YKVYTPF ++ ++            L SL  
Sbjct: 118 EEKSIQSKTYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEEKADIVESIEKLESLSD 177

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             I     +   ++P   D  +    P+    GE  A   L  F    +Y Y EQR++PA
Sbjct: 178 EEINTVKDLGLIDLPTAKDLGYSWDAPLLLEPGETAAKEQLNYFSDNAIYSYQEQRNLPA 237

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAF 297
           I  TS+LSP    G++  R+ W    E + +    + +    +W  E+ WREFY+H + F
Sbjct: 238 IDATSKLSPAFKFGIIGIREVWQATVEAYENTRSDEARENIQTWQQEIAWREFYQHCLYF 297

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +  G P+    ++  W+ +    QAW +G TG+PI+DAAMRQLN  GWMHNR RMI 
Sbjct: 298 FPELAEG-PYRDEFKEFPWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIV 356

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDL+++W+ GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q ++
Sbjct: 357 ASFLTKDLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQK 415

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +DP G +IR W+PE++++ T+ +        +   S  YP PIVDHK+       +Y   
Sbjct: 416 YDPDGEYIRLWVPEISSLDTECLVTGKIPPLEAH-SCGYPQPIVDHKQQQREFKERYKRI 474

Query: 478 K 478
           K
Sbjct: 475 K 475


>gi|262377211|ref|ZP_06070436.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii
           SH145]
 gi|262307949|gb|EEY89087.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter lwoffii
           SH145]
          Length = 469

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 185/475 (38%), Positives = 277/475 (58%), Gaps = 12/475 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+W R DLRI D+ AL+ A        IAV + +PEQW+ H  +  +  F    L  +
Sbjct: 1   MQLIWFRQDLRIHDHAALWHATQ--QGSCIAVMVLSPEQWKLHQDARIKIDFYLRRLDIL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L+Q  I         + D    + S C + ++  L  N +  +NE++RD  +++ L+
Sbjct: 59  KQQLAQLNIPLIILNVPLWQDLPAEMRSLCQKLQIDTLHANIEVGVNELQRDAQVQQMLE 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIR 183
            + I  + + D  L P  SI N + Q Y++Y+ F+K   + L+Q      P       + 
Sbjct: 119 QQQIRVELYHDRSLFPLTSIRNQSNQPYQIYSAFKKKCYERLIQNIPGCYPDIQAQDPVE 178

Query: 184 LTGPVTPSNIPRFF-DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           L   +T  ++ +F  +Y       ++P  +  AL +L  F ++K+ +Y  +R++PA+ GT
Sbjct: 179 LPDQLTSFDLQKFAANYEVDHAAQLWPAQDHTALELLDDFIEDKIAHYKTERELPAVDGT 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL+IG+LS RQC   L ++          G  +WL+EL+WREFY H +  +P V 
Sbjct: 239 SRLSPYLNIGILSIRQCMQTLFKDSY--FQIDDIGQQTWLDELLWREFYLHTLFDFPRVS 296

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +PF   T+ I+W      L AW+QG TG PI+DA MRQ+   GWMHNR+RMITA FL 
Sbjct: 297 RHRPFKENTDNIQWRNAPDNLAAWQQGQTGIPIVDAGMRQMRATGWMHNRVRMITAMFLC 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+LL+DWR+GE +FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q ++FDP G
Sbjct: 357 KNLLIDWRLGESWFMQHLIDGDLAANNGGWQWCASTGMDAVPYFRIFNPVSQSQKFDPNG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +IR W+PEL ++  + IH P++     DL+L+YP PIVD K +    +  +   
Sbjct: 417 DYIRQWVPELTHLNAKSIHEPYA--KNPDLALDYPKPIVDLKASRVRAIEAFKQI 469


>gi|24374895|ref|NP_718938.1| deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1]
 gi|24349596|gb|AAN56382.1|AE015774_17 deoxyribodipyrimidine photolyase [Shewanella oneidensis MR-1]
          Length = 512

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 202/510 (39%), Positives = 278/510 (54%), Gaps = 36/510 (7%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGISARQSH 59
             +    L+W R DLR+TDN+A  AAC     +  AK+ A++IATP QW QH I+  Q  
Sbjct: 6   NRSGKHALMWFRQDLRLTDNQAFTAACDWVRQHHAAKLKAIYIATPSQWHQHDIAPIQLD 65

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI   +  + + L   G+ F+  Q  +F D   +L SYC +  + ++F  ++ EINE +R
Sbjct: 66  FIQRHVNLLAQGLVSLGVEFELIQLDSFRDIPAFLTSYCEEHSIGRVFAGQEPEINEQKR 125

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D+     ++  +     D+  LLPPG++LN +  MY+V+TPF +   +   +  +  L V
Sbjct: 126 DQA---CVEAGIPLSLSDEHCLLPPGTVLNLSGDMYRVFTPFSRKWREVAAKQAILPLGV 182

Query: 180 PAIRLTGPVTP---------------SNIPRFFDYPFQAIDP-------MFPIGEQNALH 217
           PA   +    P               S         F    P        +  GE  A  
Sbjct: 183 PAPLGSILSEPKPLFFKNIGSTYLAASKDIASSKKGFNQTAPNPLISSEQWAAGEGQAKR 242

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
           +L +F ++KV  Y + RD PAI GTS +SPYL+IGVLSPRQC   L + F ++++   S 
Sbjct: 243 LLNQFIQQKVQDYKQDRDFPAIDGTSVISPYLAIGVLSPRQCVAALLQRFPEVIVDDTSP 302

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
             +WLNELIWREFYRHL+  +P +  G  F    + + W  +     AW +G TG+PI+D
Sbjct: 303 GRTWLNELIWREFYRHLLVAFPDLSKGNNFNRQADHVLWRNNQSEFLAWCEGKTGYPIVD 362

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           AAMRQLN  GWMHNRLRM+ ASFL K LL+DWR GE YF   L+DGDLA+NNGGWQW+A 
Sbjct: 363 AAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAG 422

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS---- 453
            G D+ PYFRIFNP  Q ++FDP G FIR +LPEL +     +H P+     +       
Sbjct: 423 CGCDAQPYFRIFNPMSQSEKFDPDGRFIRKYLPELASWGVTRLHQPNQQKMPSLFEAPLF 482

Query: 454 ---LNYPLPIVDHKKACHHTLNQYYAAKKQ 480
               +YP  IV+H  A    L      KK 
Sbjct: 483 ASQADYPNAIVEHNAARARALTVLGVLKKA 512


>gi|330722082|gb|EGG99998.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC2047]
          Length = 463

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 210/465 (45%), Positives = 288/465 (61%), Gaps = 6/465 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVWLRNDLR+ DN ALYAACH   A V AV+IATP+QW QH  SA +  F  A+L  +
Sbjct: 1   MKLVWLRNDLRLDDNPALYAACH-GTAPVRAVYIATPKQWLQHDESAAKLGFRSAALTDL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L++ GI F+  Q S F D  + L  YC +  VT L++NR++ ++E  RD  + +RL 
Sbjct: 60  KSKLAELGIGFELLQASYFSDIADLLADYCQRHAVTDLYFNREFPLHEQDRDNQVCQRLT 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              I     ++ LL    I N   Q YKV+TP+ KA ++ L   D   L  P    +   
Sbjct: 120 ALNINCHTSNADLLICAPIQNLQGQPYKVFTPWYKAWLKQLNNQDNTPLTAPKAVGSALN 179

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           +P+N            D ++P  EQ+AL  L +FC+ ++++Y + RD PAI GTS LSPY
Sbjct: 180 SPNNEHVKLPNSGAFRDDLWPASEQDALQHLAQFCQRRLHHYSDTRDFPAINGTSTLSPY 239

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G++SPR+C   +++   +     +  A  WL EL WREFYR+LM  +P +  GKPF 
Sbjct: 240 LASGLVSPRRCLMAIQQTAFEQGWDWRESA--WLRELGWREFYRYLMISFPHISHGKPFK 297

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              ++  W ++  LL AW+ G TGFPIIDAAMRQL +  WMHNRLRM+ ASFL K +L+D
Sbjct: 298 TTPQQWPWRENPALLSAWQTGNTGFPIIDAAMRQLVSTSWMHNRLRMLVASFLCKLMLID 357

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE +FM QL+DGD  SNNGGWQW+ASTG D+ P+FRIFNPT Q ++FD +G FIR +
Sbjct: 358 WREGERFFMQQLIDGDFTSNNGGWQWSASTGCDASPWFRIFNPTTQSQKFDAEGKFIRKF 417

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           LPEL  +  + IH P + L +    L YP PI+D+K A    ++ 
Sbjct: 418 LPELAELDNKQIHNPSNTLRQ---KLGYPDPIIDYKTARERAISA 459


>gi|171463059|ref|YP_001797172.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192597|gb|ACB43558.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 490

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 172/498 (34%), Positives = 249/498 (50%), Gaps = 35/498 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---------ARQ 57
           M   LVWLR DLR+ DN AL+ A   S  +V   FI   E  +               R+
Sbjct: 1   MQKALVWLRRDLRLYDNSALHHALKES-RQVWLAFIFDTEILKPLLRGKLDANGLKHDRR 59

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI+  + Q+   L  +G          F +  E +     +  V  +F N  YE + +
Sbjct: 60  VDFIWQGIKQIDDQLRAQGGGLIVR----FSNPTECIPQLASELGVNAVFANHDYEPSAI 115

Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+++  +L +  +   +F D V+     IL ++  ++ ++TP++    + L + DL +
Sbjct: 116 ERDEVVTAKLEKEGIEFLTFKDQVIFEKKEILTNSNTVFSIFTPYKNNWFKTLQEKDLAA 175

Query: 177 LPVPAIRLTGPVTPSNIPR----FFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                        P  I +         F    I+   P G +     L  F   ++  Y
Sbjct: 176 YECNPKPGQLAAIPKKISKPLPSLESMGFCPTGIESYLPPGSEGGQAFLEDFLT-RIDQY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              RD PAI+G S LS +L  G+LS R              +    GA  WL+ELIWR+F
Sbjct: 235 QISRDFPAIKGVSYLSTHLRFGMLSIRGLVREAHRRM----LAGSMGATIWLSELIWRDF 290

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           Y  ++A +P +  G  F P  + I W        L  AW +G TG+P++DAAM QLN  G
Sbjct: 291 YFMILANHPRLAKGASFKPDYDNIVWESGATAKKLFTAWCEGKTGYPLVDAAMHQLNQSG 350

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+ ASFL KDL +DWR GE YF   L D +L+SNNGGWQW +S+G D+ PYFR
Sbjct: 351 YMHNRLRMVVASFLTKDLGIDWRWGEAYFAEHLNDFELSSNNGGWQWVSSSGCDAQPYFR 410

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSL--NYPLPIV 461
           IFNP  Q ++FDP+G FI+ +LP+L  +  + +H P       L+   +SL  +YPLP+V
Sbjct: 411 IFNPITQSEKFDPEGKFIKRYLPQLEKLSKKSVHTPWKAGHIELEAAGISLDKDYPLPVV 470

Query: 462 DHKKACHHTLNQYYAAKK 479
           DH +A   TL +Y   KK
Sbjct: 471 DHDEARKKTLVRYSVVKK 488


>gi|254428910|ref|ZP_05042617.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
 gi|196195079|gb|EDX90038.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
          Length = 501

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 180/482 (37%), Positives = 264/482 (54%), Gaps = 18/482 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNS------DAKVIAVFIATPEQWRQHGISARQSHFIY 62
           ++LVW RNDLR+  +  L AA   S        + +AV+     QW +H ++  +  ++ 
Sbjct: 1   MNLVWYRNDLRVAAHSPLQAALSESSGEAVSGPRALAVYCLCQGQWDRHQVAPLRRWYVL 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+ ++ ++L+++GI     +   F    E L  +  +  VT L+ NR+Y +NE +RDK 
Sbjct: 61  ESVRELGEALARRGIDLHVLEADTFAAVPEVLAQFAQEHGVTHLYCNREYPLNEKQRDKA 120

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           + +RL+   V  + FDD VL+PP ++       Y V+  ++K     +        P P 
Sbjct: 121 VAERLRGQGVSLQGFDDGVLVPPAALRTGKGTPYTVFGAYKKRWDVWMADHHPAVTPAPP 180

Query: 182 I-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                    G        +    P +A+   +  GE+ A   L +F ++ +  Y  QRD 
Sbjct: 181 ESDHRGNFVGAAVVDKALKALSVP-EALTQQWLPGEEAAWQQLDQFVEQALAGYRRQRDF 239

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P I GTS LS  LS G LS   C+    +   D   +   GA  W+ EL WR+FYR +MA
Sbjct: 240 PDIAGTSGLSAALSAGALSVASCYRAASQAMADAGSRD--GATCWIGELAWRDFYRQIMA 297

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V  G+ F P T+ ++W++D     AW +G TG+P++DAAMRQL   GWMHNRLRM+
Sbjct: 298 QFPRVSRGQAFRPETDLLQWDQDDERFAAWCEGRTGYPLVDAAMRQLVATGWMHNRLRMV 357

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TA FL K L +DWR GE +FM+ L+DGD A+NNGGWQW+AS G D+VPYFR+FNP  QG+
Sbjct: 358 TAMFLSKHLWLDWRRGEAFFMAHLMDGDFAANNGGWQWSASAGTDAVPYFRVFNPVRQGQ 417

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           RFD +G FI  W+PEL  + ++ IH P     +  L+ +YP PIV H          + A
Sbjct: 418 RFDSEGRFIARWVPELRGLDSKQIHEPWK---QPLLAPDYPPPIVPHAGVRERVTTAFKA 474

Query: 477 AK 478
           AK
Sbjct: 475 AK 476


>gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           ATCC 10987]
 gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           ATCC 10987]
          Length = 476

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 252/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFKATQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGSTE----EEILSLIEQLGITAVYWNICYDPDRLQFNQNMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GITCKEFNSHLLLEPWMIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPES 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ + +      P+ + I+ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVTELHLLPTIPWTSHIESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S R  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474


>gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
 gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
          Length = 476

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 252/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +     +E + S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNT----LEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474


>gi|228934418|ref|ZP_04097254.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825271|gb|EEM71067.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 476

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 253/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGSTE----EEILSLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 PS--NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            S   +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-K 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFL+K L
Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           G9842]
 gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           G9842]
          Length = 476

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 253/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      +        E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + I+ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHIESIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERALCAYKSMKE 474


>gi|91774946|ref|YP_544702.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
           flagellatus KT]
 gi|91708933|gb|ABE48861.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
           flagellatus KT]
          Length = 481

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 171/482 (35%), Positives = 254/482 (52%), Gaps = 24/482 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVW R DLR  D+ ALY A  +S+ +V+  F+   +         R+  FI+ S+ 
Sbjct: 1   MTKSLVWFRRDLRDYDHAALYHALKDSE-QVVCAFVFDTDILDGLPRDDRRVEFIWESVR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +++ +L ++G             + E + +      V  ++ NR YE   V+RD  + ++
Sbjct: 60  ELKLALQERGGDLLVRHGK----ATEEIPALASVLGVECVYCNRDYEPAAVKRDDTVSQQ 115

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRL 184
           L    +  KSF D V+     I+  +   + V+TP++ A ++ L    L++ PV   I  
Sbjct: 116 LGTQGIAFKSFKDQVIFERDEIMTKSGTPFSVFTPYKNACLRKLDDFHLKAYPVDRYIHH 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                P  +P      F   +      P G    + +   F  E++  Y + RD PA++G
Sbjct: 176 LAQSAPQPMPSLESLAFARSNLKQLRLPTGMSGGMALFEDF-SERMPRYRDARDFPALKG 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS +L  G +S R       ++         +GA +WLNEL+WR+FY  ++  +P V
Sbjct: 235 PSYLSVHLRFGTVSIRHLARTAWQQ-------GGAGAETWLNELLWRDFYFQVLYHHPQV 287

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G  F P  E I +     L +AW +G TG+P++DAAMRQ+N  G+MHNRLRM+ A FL
Sbjct: 288 AEGHSFKPEFEHIPFPNGESLFKAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMVAAGFL 347

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDLL+DWR GE YF  +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q ++FDP+
Sbjct: 348 VKDLLIDWRWGERYFAEKLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDPE 407

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           G FIR ++PEL     + IHAP              +  +YP P+VDH       L+ Y 
Sbjct: 408 GKFIRKYVPELQPCDDKEIHAPWLIPPLRQQALGLVIGKDYPAPVVDHAMRREQVLSLYR 467

Query: 476 AA 477
            A
Sbjct: 468 QA 469


>gi|332535427|ref|ZP_08411214.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035151|gb|EGI71663.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 464

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 183/468 (39%), Positives = 266/468 (56%), Gaps = 9/468 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L W R DLR+  N+AL  A +N      A+F  + +QW+QH  +  Q   +   +  +Q
Sbjct: 3   TLFWFRRDLRLFSNEALIQALNNGAKH--AIFFVSEKQWQQHQAAPIQIDLLKRRVAYLQ 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L+  GI     +  +F D    L ++C    V  +  N +YE+NEV RDK +      
Sbjct: 61  SQLADYGITLHIIEAPSFCDCTRELINFCKANDVKHVIANTEYELNEVNRDKAILHECDE 120

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    ++  ++ P G++ N + +MYKV+TPF++A ++            P        
Sbjct: 121 LSITFTLYEGDLIAPVGTVKNQSNEMYKVFTPFKRAWLKQYQDTHFSLPQWPLTSDPIEF 180

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             S++              +P+ ++    ++  F  +K+  Y +QRDIP+++GTS LSPY
Sbjct: 181 DESDL-----LKSDGCSDKWPVDDETLSTVVDNFICDKLTSYDDQRDIPSVKGTSGLSPY 235

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L++G++S +Q    +++ + D+L   KS  F+W+NEL+WREFYRHL+A +P +  G  F 
Sbjct: 236 LALGIVSTKQLLINIQQRYPDILTTSKSKTFTWINELVWREFYRHLIAEFPKLSRGDNFN 295

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                + W K     +AW +G TG+P++DAAM QL   GWMHNRLRM+ ASFL K LL+D
Sbjct: 296 EKYNAVVWRKSESDFKAWCEGRTGYPLVDAAMLQLKQTGWMHNRLRMVVASFLTKHLLID 355

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE +FM  L+DGDLASNNGGWQWAASTG D+ PYFR+FNP  Q +RFDP G FIR +
Sbjct: 356 WREGERFFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRVFNPIRQSERFDPTGKFIRKY 415

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYY 475
           LPEL NVP ++IH PH++L         Y   IVDHK A    L  + 
Sbjct: 416 LPELENVPDKHIHFPHTYLAATGKDKECYWPAIVDHKAARERALAAFK 463


>gi|301054669|ref|YP_003792880.1| deoxyribodipyrimidine photolyase [Bacillus anthracis CI]
 gi|300376838|gb|ADK05742.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
           str. CI]
          Length = 476

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 156/481 (32%), Positives = 251/481 (52%), Gaps = 22/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VLPVYVHD----ETFSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +      E + S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNTM----EEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474

Query: 480 Q 480
            
Sbjct: 475 S 475


>gi|226952488|ref|ZP_03822952.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
           [Acinetobacter sp. ATCC 27244]
 gi|226836759|gb|EEH69142.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
           [Acinetobacter sp. ATCC 27244]
          Length = 476

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 189/477 (39%), Positives = 268/477 (56%), Gaps = 16/477 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A        +A+ I +PEQ + H  +  +  F    L Q+Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHATQTG--PTVALVILSPEQCQLHDDAPIKIDFYLRQLQQLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            +L    I         + D  +          + +++ N +  +NE++RD  ++K L Q
Sbjct: 64  IALQSLNIPLIVQHLPLWKDITQLFADLMQNIPIQQVYANIELGVNELKRDNEVQKLLNQ 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                  F D  L P  SI N + Q Y+V++ F+K   Q L Q+  +  PVP ++   P+
Sbjct: 124 QNKELVLFHDRTLFPVASIRNQSHQPYQVFSAFKKVCYQRLQQSLPQCYPVPDVQQ--PI 181

Query: 189 TPSNIPRFFDYP---------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                P   D+             +   +P+GE  AL +L +F  +++  Y   RD PA 
Sbjct: 182 NIDPYPSLEDFKELQLKYTQQINHLTQQWPVGESYALTLLDQFIHDRLDDYKNARDFPAQ 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTSQLS YL+IG LS RQC   L  +     +    G  +WL+EL+WREFY+H++  YP
Sbjct: 242 AGTSQLSAYLNIGTLSIRQCLQALFRKQHGDFVIESEGQQTWLDELLWREFYQHILFDYP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V    PF   T+KI W  D   LQ W+QG+TG PI+DA MRQL   GWMHNR+RMI A 
Sbjct: 302 RVSKHLPFQLSTKKINWCDDPVALQQWQQGHTGIPIVDAGMRQLLATGWMHNRVRMICAM 361

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP  Q ++FD
Sbjct: 362 FLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQKFD 421

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           P G ++R W+PEL ++  + IH P+++  K + SLNYP+PIVD K +    +  +  
Sbjct: 422 PNGDYLRQWIPELAHLDAKSIHEPYAY--KMNSSLNYPIPIVDLKSSRARAIAAFKE 476


>gi|49185961|ref|YP_029213.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Sterne]
 gi|65320437|ref|ZP_00393396.1| COG0415: Deoxyribodipyrimidine photolyase [Bacillus anthracis str.
           A2012]
 gi|165868433|ref|ZP_02213093.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0488]
 gi|167631730|ref|ZP_02390057.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0442]
 gi|167637299|ref|ZP_02395579.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0193]
 gi|170684891|ref|ZP_02876116.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0465]
 gi|177649852|ref|ZP_02932853.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0174]
 gi|190564773|ref|ZP_03017694.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227814024|ref|YP_002814033.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. CDC 684]
 gi|229603798|ref|YP_002867382.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0248]
 gi|254685712|ref|ZP_05149571.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254723122|ref|ZP_05184910.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A1055]
 gi|254738183|ref|ZP_05195886.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Western North America USA6153]
 gi|254742647|ref|ZP_05200332.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Kruger B]
 gi|254752497|ref|ZP_05204533.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Vollum]
 gi|254761013|ref|ZP_05213037.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Australia 94]
 gi|270000553|ref|NP_845490.2| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Ames]
 gi|49179888|gb|AAT55264.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. Sterne]
 gi|164715159|gb|EDR20676.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0488]
 gi|167514806|gb|EDR90172.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0193]
 gi|167532028|gb|EDR94664.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0442]
 gi|170671151|gb|EDT21889.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0465]
 gi|172083804|gb|EDT68863.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0174]
 gi|190564090|gb|EDV18054.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005678|gb|ACP15421.1| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. CDC 684]
 gi|229268206|gb|ACQ49843.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. A0248]
 gi|269850227|gb|AAP26976.2| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. Ames]
          Length = 476

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 254/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+H+
Sbjct: 60  QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHK 115

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 PS--NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            S   +      P+ + ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-K 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|302035591|ref|YP_003795913.1| deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
 gi|300603655|emb|CBK39986.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
          Length = 481

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/481 (35%), Positives = 266/481 (55%), Gaps = 20/481 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVW R DLR++DN AL AAC     +++ +F+      R H   +    F+   L +++
Sbjct: 3   GLVWFRRDLRLSDNPALSAACQEC-REIVPLFVFDEPLLRSHAFGSACVGFMLGCLEELR 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL+  G+   +      +  ++  D +    +V  +++NR YE   + RD+ +++RL  
Sbjct: 62  RSLALHGVSLAWRMGDPVESVLQAADDF----KVDAVYWNRDYEPAALERDREVQQRLAQ 117

Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           +    ++F D V+     +   +   ++ Y+ +R         A    L +P+    G  
Sbjct: 118 QGRTVRTFKDHVVFEAEEVRGLSGDPFQRYSAYRDRWWTKWRAAAPPLLGIPSFPPAGKA 177

Query: 189 TPSNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           +  +  ++    D  ++++      GEQ A   L+ F +  V+ YV  R++PAI GTS+L
Sbjct: 178 STPDSRKWPSVTDLGYESVPMWIEPGEQAAHARLQWFLRGPVHQYVTGRNLPAIDGTSKL 237

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG- 304
           SP+L  G +S R   +             ++  F+W++EL+WREF++ ++A +P V  G 
Sbjct: 238 SPHLRFGTVSARTLVHAALNALAKGGAVSRADVFTWVDELVWREFFQQVLAAFPHVAHGP 297

Query: 305 ---KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              KP +P        +D  L  AW QG TG+PI+DA MRQLN  GWMHNR+RM+ ASFL
Sbjct: 298 FKAKPGLPEPRPAGPERDR-LFAAWSQGLTGYPIVDAGMRQLNQTGWMHNRVRMVVASFL 356

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDL VDW+ GE YFM +L+DGDLA+NNG WQW ASTG D++  +RIFNP IQ ++FD +
Sbjct: 357 VKDLRVDWQSGERYFMERLVDGDLAANNGNWQWCASTGTDAMQGYRIFNPRIQSEKFDAE 416

Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G ++R ++PEL +VPT++IH PH             +  +YP PIVDH++A    L+   
Sbjct: 417 GEYLRRYVPELKHVPTKWIHEPHLMPPLEQVQAGCRIGSDYPEPIVDHRQARQEYLDLGK 476

Query: 476 A 476
           A
Sbjct: 477 A 477


>gi|255318398|ref|ZP_05359631.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens
           SK82]
 gi|262378628|ref|ZP_06071785.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           radioresistens SH164]
 gi|255304390|gb|EET83574.1| deoxyribodipyrimidine photo-lyase [Acinetobacter radioresistens
           SK82]
 gi|262299913|gb|EEY87825.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
           radioresistens SH164]
          Length = 479

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 193/481 (40%), Positives = 267/481 (55%), Gaps = 15/481 (3%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MSV  LVW R DLRI D+ AL+ A        IA+   +P QWRQH  +  +       L
Sbjct: 1   MSVYQLVWFRQDLRIVDHSALWHARQTG--PCIALVTLSPVQWRQHDDAVIKIDLYLRQL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++ L Q  I         + +  E+L   C    V ++  + +  INE +RD+  ++
Sbjct: 59  KVLKEQLKQLNIPIIIQTIPLWKEVPEFLLECCQSLSVQQIHAHIEAGINEQQRDQDCQQ 118

Query: 126 RLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    I  + + D  L P GSI N   Q Y+V+  F+KA    L  A  +       + 
Sbjct: 119 LLDTSGIALTLYQDRTLFPFGSITNQNGQPYQVFGAFKKACYSRLEIALPKCYTEITAQN 178

Query: 185 TGPV--------TPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
              +        T  +I +  D P  ++I  ++P  E +A  +L +F +  + +Y  +RD
Sbjct: 179 PITLPALDQFQQTVPDIRQLCDIPVPESIQQLWPACENHAHTLLEQFLENHIQHYHIERD 238

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PA  GTSQLS YL+IGVLS RQC   L        +  + G   WL+EL+WREFY+H++
Sbjct: 239 FPAHSGTSQLSAYLNIGVLSIRQCIQALFRHQSGYFVPEQEGQSIWLDELLWREFYQHIL 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P+V    PF      I W  D   L AW+QG TG PI+DA MRQL   GWMHNR+RM
Sbjct: 299 YLFPNVSKYLPFKANARNIPWQDDKTALTAWQQGQTGIPIVDAGMRQLLVTGWMHNRVRM 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           ITA FL K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG DSVPYFRIFNP  Q 
Sbjct: 359 ITAMFLCKNLLIDWRQGEQWFMQHLIDGDLAANNGGWQWCASTGTDSVPYFRIFNPVSQS 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           ++FDP+G +IR W+PEL ++  + IHAP+    K    L+YP PIVD K +    ++ + 
Sbjct: 419 RKFDPEGQYIRTWIPELAHLDAKTIHAPYE--SKTVQQLDYPKPIVDLKYSRARAIDHFK 476

Query: 476 A 476
            
Sbjct: 477 Q 477


>gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 474

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/483 (33%), Positives = 249/483 (51%), Gaps = 24/483 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
             V +VW+R DLRI D+ AL AA       VI ++I +P++     +      +++ SL 
Sbjct: 2   AKVTIVWMRQDLRIEDHPALDAAAQRG--SVIPLYIWSPQEEGHWPLGGASKWWLHHSLK 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L   G+     +      S++ L     +     +F++R+YE   ++RD  ++ +
Sbjct: 60  SLENDLRSLGLPLIIRKGK----SLDCLRDVIKETNADAVFWSRRYEPYAIKRDIQVKSK 115

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L +  ++ KSF  +VL  P SI N   + ++V+T F K  +         S P+      
Sbjct: 116 LSEEGLLAKSFPGNVLYEPWSIQNKQGKPFQVFTFFWKNCLAKEQPLAPLSAPIGVKGKI 175

Query: 186 GPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             V   +I      P  + D      +  G   A   L  F +   + Y E+RD P + G
Sbjct: 176 VEVDSLHIEDLKLLPTTSWDEGIAHTWKPGSVYAKEFLSYFLEGGAHDYNERRDRPDLPG 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S+LSPYL  G +S R  W+ + ++           A  +L +L WR+F  HL+  +P  
Sbjct: 236 VSRLSPYLHFGEISVRMVWDEIVKKL------GFQEAEPYLRQLGWRDFAYHLLYHFPKT 289

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +P         W ++  LL+ W++G TG+P +DA MRQL   GWMHNR RM+  SFL
Sbjct: 290 PE-EPLRQEFAYFPWKENKKLLKVWQKGMTGYPFVDAGMRQLWMTGWMHNRARMVVGSFL 348

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDLL+ W+ G ++F   L+D DLA+N  GWQW A +G D+ PYFRIFNP  QG++FDP+
Sbjct: 349 VKDLLLPWQTGAQWFWDTLVDADLANNTLGWQWVAGSGADAAPYFRIFNPITQGEKFDPE 408

Query: 422 GTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475
           G+++R W+PE+ N+P ++IH P       L+K  + L   YP PIV+H +A    L  + 
Sbjct: 409 GSYVRKWVPEIANLPDKWIHKPWEAPLDVLEKAGVKLGQTYPYPIVNHDEARLAALEAFE 468

Query: 476 AAK 478
             K
Sbjct: 469 EIK 471


>gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
           neptunium ATCC 15444]
          Length = 485

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/489 (32%), Positives = 244/489 (49%), Gaps = 22/489 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++ S  ++W R DLR+TDN AL AA  NS   +I V++          +      ++  S
Sbjct: 2   SSASPAILWFREDLRLTDNPALNAAV-NSGRPLICVYLRETGAGAPREMGGASRWWLNKS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G             + + + +   +     +F+NR+Y + E   D  ++
Sbjct: 61  LASLGASLEAIGGKLTLRTGP----AEKIIPALVEETGAAAVFWNRRYGLPERETDAAIK 116

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           K L+   + C+SF+  +L+ P  +   +   YKV+TPF +AL           +P P   
Sbjct: 117 KTLKDNGVECQSFNGRLLMEPWDLKTGSGGWYKVFTPFWRALQAQYK--PPAFIPSPKKI 174

Query: 184 LTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   N+  +  +P +      I   +  GE  A   L  F    V  YV  R++P 
Sbjct: 175 AGASAETENLKDWGLHPEKPDWSGGIAAAWEPGEVGAQKRLDAFLDGPVSDYVGTRNLPG 234

Query: 239 IQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           +  GTS+LSP+L  G + P Q W  ++    +     +  A  +L+E+ WREF   L+ +
Sbjct: 235 VSTGTSRLSPHLRFGEIGPAQIWRAVRARL-EAQQADEDSARVFLSEIAWREFSYTLLYY 293

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P++     +     ++ W KD     AW +G TG+PI+DA MR+L   GWMHNR+RMI 
Sbjct: 294 NPALATEN-YNSNFNQMAWRKDDSGFAAWSRGQTGYPIVDAGMRELWHTGWMHNRVRMIV 352

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+ W+ GE++F   L+D D A+N   WQW A +G D+ PYFR+FNP  QG++
Sbjct: 353 ASFLTKHLLLPWQQGEQWFWDTLVDADPAANPASWQWTAGSGADAAPYFRVFNPISQGQK 412

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTL 471
           FD  G ++RHW PEL  +P +Y+HAP           +  L  +YP PI+DH       L
Sbjct: 413 FDEDGAYVRHWCPELAGLPDKYLHAPFEADAQTLKRARVMLGTDYPEPIIDHPVGRQRAL 472

Query: 472 NQYYAAKKQ 480
           + Y A K++
Sbjct: 473 DAYKAMKEE 481


>gi|229156755|ref|ZP_04284842.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
 gi|228626675|gb|EEK83415.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
          Length = 476

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 161/480 (33%), Positives = 253/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQK
Sbjct: 6   IMMFQKDFRLYDNPALFEAAQSGE--VVPVYVQD----ETFSIGSASKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      + +      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGNT----QEEILSLIEQLNITAVYWNSCYDPDRLKSNQKMKIVLEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IRLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + I+ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHIESIWNPTEEGAYKTCKKFFFSKLASYSEGRDFPNENAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S R  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474


>gi|304391382|ref|ZP_07373324.1| cryptochrome-2 [Ahrensia sp. R2A130]
 gi|303295611|gb|EFL89969.1| cryptochrome-2 [Ahrensia sp. R2A130]
          Length = 480

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/487 (32%), Positives = 234/487 (48%), Gaps = 22/487 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  S  ++W R DLR+ DN AL AA   S   V+AVF+          +      +++ S
Sbjct: 2   SKTSPIIMWFRQDLRLDDNPALIAAAE-SGKPVVAVFVFDEASEGIRKLGGAMRWWLHHS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + K L   G+     +        E +     +     + +NR+Y   E   D  ++
Sbjct: 61  LKSLTKDLGALGVDLILRRGP----GAEVIFDLAKEVGAENVVWNRRYGDAEQTVDATIK 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              +     KS+   ++  P ++       YKVYTPF K   +  +  D    P      
Sbjct: 117 GDFE--GEAKSYGGIIMHEPINVRTGTGNPYKVYTPFWKKFCEMGLPRDAHPAPQEIAGF 174

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            G V   N+  +   P +         ++  GE  A    R F  + +  Y   RD+P  
Sbjct: 175 GGDVASDNLDEWDLLPTKPDWSDGWLKVWTPGESAAQTRARAFMSDDLDVYDSARDLPGD 234

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LSP+L  G +SP + W   ++     L        +W+ EL+WREF  HL+  +P
Sbjct: 235 DRTSRLSPHLRWGEISPYRLWQMAQD---GRLSAGSKARETWVKELVWREFSYHLLQEWP 291

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   + F    +   W  D   L+AW++G TG+PI+DA MRQL   GWMHNR+RMI  S
Sbjct: 292 DLA-NENFNTKYDSFPWRSDDEQLRAWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMIVGS 350

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK LL+DWR GE++F   L+DGD ASN+  WQW A TG D+ P+FRIFNP +Q ++FD
Sbjct: 351 FLVKHLLLDWRHGEDWFWDTLVDGDPASNSAQWQWVAGTGADAAPFFRIFNPIMQAEKFD 410

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQ 473
             G +I+ W+PEL  +P +Y+ +P              L   YP PIVDHK+A    L  
Sbjct: 411 KDGVYIKKWVPELAKLPAKYLPSPWEAPLTVLRDAGVKLGDTYPRPIVDHKEARERALAA 470

Query: 474 YYAAKKQ 480
               ++ 
Sbjct: 471 LQEMREA 477


>gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           H3081.97]
 gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           H3081.97]
          Length = 476

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 156/481 (32%), Positives = 254/481 (52%), Gaps = 22/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ +++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYD----ETFSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNTM----EEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSNEKQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474

Query: 480 Q 480
            
Sbjct: 475 S 475


>gi|326484060|gb|EGE08070.1| deoxyribodipyrimidine photo-lyase [Trichophyton equinum CBS 127.97]
          Length = 589

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 177/490 (36%), Positives = 257/490 (52%), Gaps = 19/490 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A     + +  +I ++I +PE    H  S  +   I  +L  
Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRALAT 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+  I                +   C      +LF N +YE++E+RR+  L +  
Sbjct: 160 LKSELSKNDIPLYMESIERRKGVPSRIVELCKTWGANQLFANIEYEVDELRREANLVRLC 219

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRL 184
             + I   + DD+ ++ PG +     + Y VYTP+ ++ +  L Q    L  +  PA+  
Sbjct: 220 AKQGIRFYTEDDTCVVTPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279

Query: 185 TGP------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                           T  N  + F    +    M+P GEQ A   LR+F  +K   Y  
Sbjct: 280 GDARNHFKDLFDSAVPTAPNQMKLFGAEQERFKKMYPEGEQEATRRLREFLSKKGKQYHA 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD  + Q TS LSPY S G LS R      ++   + L     G  +W++E+ WR+FY+
Sbjct: 340 KRDSMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYK 399

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  D     AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 400 HVLTNWPYICMNKCFKPEFTDLEWEYDPTKFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 459

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 460 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 519

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L
Sbjct: 520 RQSERFDPDGEYIRHWVPELRDVEGSAIHDPYGRGAEKIAEKNGYPRPIVNHTESRERAL 579

Query: 472 NQYYAAKKQS 481
            +Y  A + S
Sbjct: 580 AKYKKAAQGS 589


>gi|118478461|ref|YP_895612.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
           str. Al Hakam]
 gi|196042568|ref|ZP_03109807.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           03BB108]
 gi|118417686|gb|ABK86105.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
           str. Al Hakam]
 gi|196026052|gb|EDX64720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           03BB108]
          Length = 476

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 252/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGSTE----EEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IRLTGP 187
             ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPSS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +++  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFTAY-K 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFL+K L
Sbjct: 295 PLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|196037804|ref|ZP_03105114.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
 gi|196031074|gb|EDX69671.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
          Length = 476

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 253/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 PS--NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            S   +      P+ + ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-K 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
 gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
          Length = 476

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 254/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      + +      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLKALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K+++ L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKSMKE 474


>gi|59713936|ref|YP_206711.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri
           ES114]
 gi|59482184|gb|AAW87823.1| deoxyribodipyrimidine photolyase Phr, FAD-binding [Vibrio fischeri
           ES114]
          Length = 479

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 205/472 (43%), Positives = 270/472 (57%), Gaps = 11/472 (2%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           VW R+DLR  DN AL AA  N      A+FI +  QW++H  +  Q   I   L++++  
Sbjct: 10  VWFRHDLRTIDNPALQAAVDN-QQPTFALFIYSESQWKKHNKAPIQIDLIKRRLVELKNE 68

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L Q  I         F +    + +   +  V  LF N++YE +E  RD  + + L    
Sbjct: 69  LEQLNIPLIVISSPLFSEIPAKITALFNELSVNALFANKEYEHDERLRDTQVYESL-LNT 127

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
            C  FD   +LP G+I+N   Q YKV+TPF+KA   +  Q            L  P    
Sbjct: 128 NCYFFDAKCILPVGTIINRTQQPYKVFTPFKKAWKASFYQQQPHITKTGKSVLCDPKLIK 187

Query: 192 NIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            +    D  F          +P+  +  + ILR+FC++KV  Y   RD P IQGTSQLSP
Sbjct: 188 KLSLNNDDSFVFSSSNESGSWPVSTKAIIDILRQFCRQKVSQYHNNRDYPEIQGTSQLSP 247

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+IG +S +QC  RL    ++   +   G   WL+ELIWREFY HL+ FYP++   + F
Sbjct: 248 YLAIGAISAKQCALRLH---LEANYELNQGEDIWLDELIWREFYTHLLHFYPNLSKNQAF 304

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
           + + + IEW+ +    + W +G TGFPI+DAAM+QLNT GWMHNRLRMITASFLVKDL +
Sbjct: 305 LSYDKYIEWDNNLDHFERWCKGETGFPIVDAAMKQLNTTGWMHNRLRMITASFLVKDLHI 364

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YFMS+L+DGD ASNNGGWQW AS G DS PYFRIFNP  QGK+FD   TFI+H
Sbjct: 365 DWRWGEQYFMSKLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPITQGKKFDADCTFIKH 424

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           WLPEL  +  + IH P+        S NYP  IVDH +     +  Y  AK+
Sbjct: 425 WLPELKALSNKEIHHPN--PAPLLKSDNYPDQIVDHAQQRIKVIEVYKQAKQ 474


>gi|56460496|ref|YP_155777.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
 gi|56179506|gb|AAV82228.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
          Length = 468

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 191/469 (40%), Positives = 262/469 (55%), Gaps = 9/469 (1%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R+DLRI DN A+++ACH  D   +A+F    E W+ H  +  +  FI+ +L  +Q+ 
Sbjct: 5   IWFRSDLRILDNPAVFSACH-GDEPPLAIFFVCHETWKSHDWAPIKVDFIWRNLECLQQD 63

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR- 130
           L++KGI  Q      F      L S+C + ++ ++  N +Y ++E RRD      L +  
Sbjct: 64  LAEKGIELQVQLVPKFSQVPGALRSFCRENKIARVHINAEYALDEKRRDAATNAVLSNDD 123

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +   S   ++L+ PG +       YK +TPF +   Q L +                 + 
Sbjct: 124 IELVSHHGNLLVSPGEVRTQQGDYYKKFTPFNRRWRQVLSEK-----TYSEPLQIKSYSR 178

Query: 191 SNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                  + P    D   +  GEQ  L  L +F    V  Y + RD+PA  GTSQLS YL
Sbjct: 179 VTAKGLPECPLGRKDSSDWSAGEQQVLGKLGQFVGHSVDDYQQARDLPAENGTSQLSAYL 238

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           + GV+ P+     L +   +      SGA +WL EL WREFY+HLM F P +  G+ F  
Sbjct: 239 AQGVIGPQTAVRALHKFSPEFPFGLASGADTWLTELAWREFYQHLMYFVPRLSKGESFQS 298

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
            T+ I+W +D    Q W  G TG+PI+DA MRQL + GWMHNRLRMITA+FLVKDLLVDW
Sbjct: 299 ETDSIQWLEDDDAFQRWCDGRTGYPIVDAGMRQLTSTGWMHNRLRMITANFLVKDLLVDW 358

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE +FM  L+DG   +NNGGWQW+AS G D+VPYFR+FNP  Q ++FDP G +IR W+
Sbjct: 359 RKGEAFFMQHLIDGSFPANNGGWQWSASVGTDAVPYFRVFNPVKQSEKFDPDGQYIRKWV 418

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            EL  VPT+YIH PHSWL +   S NY  P+V+HK A    L  +   K
Sbjct: 419 EELKEVPTKYIHWPHSWLQQQS-SNNYCDPMVEHKFARERFLTTFKQVK 466


>gi|262372026|ref|ZP_06065305.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii
           SH205]
 gi|262312051|gb|EEY93136.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter junii
           SH205]
          Length = 480

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 177/480 (36%), Positives = 267/480 (55%), Gaps = 14/480 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L+W R DLR+ D  AL+ A  N     IA+ I +PEQW++H  +  +  F    LL+
Sbjct: 4   TYQLIWFRQDLRVRDQAALWHARQNG--PCIAICILSPEQWQRHDDADIKIDFYLRQLLE 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+  I         +DD  E+      +     ++ N ++  NE++RD  +++ L
Sbjct: 62  LKTELSKLQIPLLIFTVPLWDDIAEFFVDLAEKLPFENVYANIEFGFNELKRDNEVQQSL 121

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + +     F D  L P  SI   +   Y+V+  F+K+  Q L     +  P+P  + T 
Sbjct: 122 NRQKKQLILFQDRTLFPVASIRTQSNLPYQVFGAFKKSCYQRLELGLPQCYPIPETQATL 181

Query: 187 PVTPSNIPR---------FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                 + +         + D         + +GE++A ++L +F ++++  Y   RD P
Sbjct: 182 EFDFCQLHQTDLQNIQNHYADKIKDKNASEWRVGEKHARNLLNQFVEKRIIQYNALRDYP 241

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           +++GTSQLS YL+IG++S RQC            +    G  +WLNEL+WREFY+H++  
Sbjct: 242 SVKGTSQLSAYLNIGIISIRQCIQAAFRHQQGDFVIQSEGQQTWLNELLWREFYQHILFD 301

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P V    PF   T+ ++W  DS   + WK+G TG PI+DA MRQL + GWMHNR+RMI 
Sbjct: 302 FPQVSKHLPFKAATQNVQWRDDSEGFEKWKRGQTGIPIVDAGMRQLLSTGWMHNRVRMIC 361

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           A FL K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP  Q ++
Sbjct: 362 AMFLTKNLLIDWRKGEQWFMQNLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQK 421

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FD  G +IR W+PEL  +  + IH P++      L L+YP PIVD K +    +  + A 
Sbjct: 422 FDENGVYIRRWVPELTQLDAKRIHEPYA--QNTALKLDYPHPIVDLKTSRERAIQAFQAL 479


>gi|327305599|ref|XP_003237491.1| deoxyribodipyrimidine photo-lyase [Trichophyton rubrum CBS 118892]
 gi|326460489|gb|EGD85942.1| deoxyribodipyrimidine photo-lyase [Trichophyton rubrum CBS 118892]
          Length = 589

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 174/486 (35%), Positives = 255/486 (52%), Gaps = 19/486 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A       +  +I ++I +PE    H  S  +   I  +L+ 
Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARYHNIPLICLYIFSPEDLTAHLCSPPRVDLILRTLVT 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+K I                +   C       LF N +YE++E+RR+  L +  
Sbjct: 160 LKSELSRKDIPLYMESIERRKGIPSRIVELCKTWGANHLFANIEYEVDELRREAKLTRLC 219

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRL 184
             + I   + DD+ ++ PG +     + Y VY+P+ ++ +  L Q    L  +  PA+  
Sbjct: 220 ATQGIRFDTEDDTCVVAPGELTTQQGKQYAVYSPWYRSWVAYLKQHPENLELVDAPAVNA 279

Query: 185 ------------TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                       +      N  +  +   +    M+P GEQ A   LR+F  +K   Y  
Sbjct: 280 GNARKHFKNLFDSAVPIAPNQMKLSEAEQERFKKMYPEGEQEAARRLREFLSKKGKQYHA 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD  + Q TS LSPY S G LS R      ++   + L     G  +W++E+ WR+FY+
Sbjct: 340 KRDFMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYK 399

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  DS    AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 400 HVLTHWPYICMNKCFKPEFTDLEWEYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 459

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 460 TRMIVSSFLSKDLLIDWRCGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 519

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IR+W+PEL +V    IH P+          N YP PIV+H ++    L
Sbjct: 520 RQSERFDPDGDYIRYWVPELRDVEGSAIHDPYGRGAGGIAEKNGYPKPIVNHTESRERAL 579

Query: 472 NQYYAA 477
            +Y  A
Sbjct: 580 EKYKKA 585


>gi|154296018|ref|XP_001548442.1| hypothetical protein BC1G_13162 [Botryotinia fuckeliana B05.10]
 gi|150843814|gb|EDN19007.1| hypothetical protein BC1G_13162 [Botryotinia fuckeliana B05.10]
          Length = 607

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 164/487 (33%), Positives = 248/487 (50%), Gaps = 21/487 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR  DN AL  A   +    I +   +I +P+ +  H  +  +  FI  +L  
Sbjct: 114 VHWFKCDLRTKDNTALSMASQKAKELGIPLVTMYIVSPQDFEAHLTAPVRVDFILRTLDI 173

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K L++  I                +     +   +  + N +YE++E+RR+  + +  
Sbjct: 174 LKKDLAKLDIPLYVETIDKRKRVESRILELLGEWGCSHFYANMEYEVDELRREARMVRAC 233

Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSLP 178
             + IC     D+ ++ PG + +   + Y VYTP+ K+ +  + +              P
Sbjct: 234 VEKGICMDVIHDTCVVRPGELKSGQGKQYAVYTPWFKSWVAYVHENSDLLELFDAPEKNP 293

Query: 179 VPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             A +    +  + IP             +    M+P GE  A   L KF  EK+  Y +
Sbjct: 294 SSARKTFAKLFETEIPDAPKNKSLTSEEKERFRSMWPAGEHAAHERLSKFADEKINKYQD 353

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFY 291
            R+ P++  TS LS + + G LS R      ++      L     G  +W++E+ WR+FY
Sbjct: 354 HRNFPSLNSTSSLSVHFASGTLSSRTAIRTARDHNNTKKLNAGYQGIQTWISEVAWRDFY 413

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P VCM KPF P    IEW  +    QAW +G TG+PI+DAAMRQLN  G+MHN
Sbjct: 414 KHVLVHWPYVCMNKPFKPEYTNIEWEYNRAHFQAWTEGRTGYPIVDAAMRQLNHCGYMHN 473

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI  SFL K LL+DWR+GE YFM  L+DGD ASNNGGW + ASTG D  PYFRIFNP
Sbjct: 474 RSRMIVGSFLAKHLLLDWRMGERYFMEHLIDGDFASNNGGWGFCASTGVDPQPYFRIFNP 533

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHKKACHH 469
            +Q ++FD +G +IR W+ EL  V  + IH P+   +   ++    YP  IV+HK +   
Sbjct: 534 LLQSEKFDAEGEYIRKWVEELKGVKGKAIHEPYGDKEAAKIAKKSGYPERIVEHKVSRER 593

Query: 470 TLNQYYA 476
            L +Y  
Sbjct: 594 CLKRYKE 600


>gi|228986230|ref|ZP_04146370.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773492|gb|EEM21918.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 476

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 155/481 (32%), Positives = 252/481 (52%), Gaps = 22/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ +++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYD----ETFSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      + +      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGNTM----EEILSLIEQLGMTAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYHAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474

Query: 480 Q 480
            
Sbjct: 475 S 475


>gi|83770999|dbj|BAE61131.1| unnamed protein product [Aspergillus oryzae]
          Length = 624

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 172/486 (35%), Positives = 255/486 (52%), Gaps = 19/486 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ DN+AL  A          +IA++I +PE    H  S  +      +L Q
Sbjct: 133 VHWFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTLRTLEQ 192

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L +  I        +  D  + +   C +     LF N +YE++E+RR+  L +  
Sbjct: 193 LKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAKLVRLC 252

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSLP 178
            ++ +      D+ ++PPG + +   + Y VY+P+ ++    L+             S P
Sbjct: 253 VENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEEPGSNP 312

Query: 179 VPAIRLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             A ++   +  S      N  R  D   +    ++P GE   L  L  F +EK   Y +
Sbjct: 313 GNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKATAYDD 372

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+  + Q TS LSPY + G LS R    + K+   + L + + G  SW++E+ WR+FY+
Sbjct: 373 MRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAWRDFYK 432

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  +     AW +G TGFPI+DAAMRQ+ +  WMHNR
Sbjct: 433 HVLVRWPFICMNKCFKPEFTDLEWEYNMDYFNAWCEGRTGFPIVDAAMRQMKSSAWMHNR 492

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIF+P 
Sbjct: 493 SRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFSPL 552

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IR W+PEL  +    IH P+     +    N YP PIVDH       L
Sbjct: 553 RQSERFDPDGDYIRRWVPELREIEGSAIHDPYDRGAGDLAEKNGYPRPIVDHATRRALAL 612

Query: 472 NQYYAA 477
           ++Y  A
Sbjct: 613 DRYKKA 618


>gi|229185362|ref|ZP_04312545.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
 gi|228598095|gb|EEK55732.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
          Length = 476

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 252/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGSTE----EEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDK 115

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IRLTGP 187
             ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPSS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +++  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFTAY-K 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFL+K L
Sbjct: 295 PLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|49478047|ref|YP_037258.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49329603|gb|AAT60249.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 476

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 254/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+H+
Sbjct: 60  QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEHK 115

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 PS--NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            S   +      P+ + ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-K 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|110833627|ref|YP_692486.1| DNA photolyase [Alcanivorax borkumensis SK2]
 gi|110646738|emb|CAL16214.1| DNA photolyase [Alcanivorax borkumensis SK2]
          Length = 484

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 184/485 (37%), Positives = 269/485 (55%), Gaps = 19/485 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNS-------DAKVIAVFIATPEQWRQHGISARQSHFI 61
           ++LVW RNDLR+  +  L+AA   S         + +AV+     QW +H ++  +  ++
Sbjct: 1   MNLVWYRNDLRVAAHSPLHAALTESSISAGETRPQALAVYCLCQGQWDRHQVAPLRRWYV 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL ++ +SL+ +GI         F+   E L  +   Q VT L+ NR+Y +NE +RD 
Sbjct: 61  LESLRELGESLANRGIDLHVLDVDTFEKVPEALAEFAQSQGVTHLYCNREYPLNEKQRDT 120

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           L+ +RL +  +I + FDD VL+PP ++       Y V+  ++K              PVP
Sbjct: 121 LVAERLREQGIILRGFDDGVLVPPAALRTGKGTPYTVFGAYKKRWDVWTADHHPAMTPVP 180

Query: 181 AI-----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           +         G    +      D P +A+   +  GE+ A   L +F +  +  Y   RD
Sbjct: 181 SQCRAEGTFMGAKVVAKALEMLDVP-EALTQQWAPGEEAAWQQLDQFMERSLADYRRNRD 239

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P + GTS LS  LS G LS   C+    +   D   +   GA  W++EL WR+FYR +M
Sbjct: 240 FPDLSGTSGLSVALSAGTLSVASCFRAATQAMADAGSRD--GAACWIDELAWRDFYRQIM 297

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A +P V  G+ F P T+ +EW  D  L  AW +G TG+P++DAAMRQL   GWMHNRLRM
Sbjct: 298 AQFPRVSRGQGFRPETDLLEWKNDDELFAAWCEGRTGYPLVDAAMRQLVATGWMHNRLRM 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TA FL K L +DWR GE +FM+ L+DGD A+NNGGWQW+AS+G D+VPYFR+FNP  QG
Sbjct: 358 VTAMFLSKHLWLDWRRGEAFFMTHLIDGDFAANNGGWQWSASSGTDAVPYFRVFNPVRQG 417

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +RFD +G FI HW+P+L ++ ++ IH P     +  L+ +YP P+V H          + 
Sbjct: 418 QRFDSEGRFIAHWVPQLRDLDSKQIHEPWK---QPLLARDYPPPVVPHAGVRERVTVAFK 474

Query: 476 AAKKQ 480
           AAK +
Sbjct: 475 AAKSR 479


>gi|229097643|ref|ZP_04228601.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
 gi|229116646|ref|ZP_04246032.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
 gi|228666818|gb|EEL22274.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
 gi|228685782|gb|EEL39702.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
          Length = 476

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 253/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129
            L   G      +        E + S   Q R+T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGRTE----EEIRSLIEQLRITAVYWNICYDPDRLQSNQKMKMMLEGK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQIIPKPISKVQSIKWGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+ +Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S R  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVRLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|218904303|ref|YP_002452137.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH820]
 gi|218535120|gb|ACK87518.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH820]
          Length = 476

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 254/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEATQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+H+
Sbjct: 60  QLEALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHK 115

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 PS--NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            S   +      P+ + ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-K 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|319795849|ref|YP_004157489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS]
 gi|315598312|gb|ADU39378.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus EPS]
          Length = 499

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 175/493 (35%), Positives = 259/493 (52%), Gaps = 30/493 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ DN ALY A      +V+ VF+           + R+  FI  SLL++Q
Sbjct: 15  GLMWFRRDLRVDDNAALYRALRAC-RQVVCVFVFDKAILDPLPSADRRVEFIRESLLELQ 73

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L                 +++ + +      V  +F NR  E + + RD  +   L +
Sbjct: 74  AELGALSGGLIVRHS----HAVQEIPALASDLGVQAVFANRDDEPDALERDAKVLGALAN 129

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV----PAIRL 184
             I   ++ DS +     +L    Q Y V+TP+++A +  +    L+  PV     A+  
Sbjct: 130 AGIAFHTYKDSTVFDRDEVLTKTGQPYTVFTPYKRAWLAKVDSFFLKPYPVRGHADALVP 189

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                   +P   +  F+  +      P G   A  +   F  E++  Y E R+ PA++G
Sbjct: 190 PPQAYREPMPSLGELGFEKTNLSALEIPTGSLGAGVLFEDFF-ERIDRYDEARNFPAVRG 248

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S +  +L  G +S RQ  +   +    L ++  +GA +WL+ELIWR+FY  ++  +P V
Sbjct: 249 PSYMGVHLRFGTVSIRQVASVAHQ----LSLQGNAGAATWLSELIWRDFYFQILTHFPHV 304

Query: 302 CMG---KPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                 K F P  +KI+W+       LL AW +G TG+P++DAAM Q+N  G+MHNRLRM
Sbjct: 305 HKDGESKSFRPEYDKIQWHHGKHADQLLDAWCEGRTGYPLVDAAMLQINQSGYMHNRLRM 364

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL KDL +DWR GE YF   L D +LASNNGGWQWA+S+G D+ PYFRIFNP  Q 
Sbjct: 365 VVASFLCKDLGLDWRRGERYFALHLNDFELASNNGGWQWASSSGCDAQPYFRIFNPVTQS 424

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKACHH 469
           +RFDP+G FIR +LP+L  +    IHAP +     L+   + L   YPLP+VDH +A   
Sbjct: 425 ERFDPEGKFIRRYLPQLARLSNAAIHAPWTASPVELEAAGIKLGETYPLPVVDHAEAREK 484

Query: 470 TLNQYYAAKKQSL 482
           TL +Y  A+ ++L
Sbjct: 485 TLQRYGVARAKAL 497


>gi|310798711|gb|EFQ33604.1| DNA photolyase [Glomerella graminicola M1.001]
          Length = 591

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 174/494 (35%), Positives = 258/494 (52%), Gaps = 20/494 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58
           KA       + W + DLR  DN++L  A      +   +IA+FI +P+ +  H  +  + 
Sbjct: 90  KAVKPKDAVVHWFKMDLRTADNRSLSLASEKAKEAGVPLIAMFIVSPQDYEAHLTAPIRV 149

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  +L  ++  L++  I              + +     Q   + LF N +YE++E+R
Sbjct: 150 DFMLRTLHTLRGDLAKLDIPLYVETVEKRKRIPDRIAELMDQWGASHLFANMEYEVDELR 209

Query: 119 RDKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------ 171
           R+  + +    R +      D+ ++PPG + + + + Y VYTP+ +A ++++        
Sbjct: 210 REAKMVRMFADRGLSYEVLHDTCVVPPGQLTSGSGKQYAVYTPWFRAWVRHVHDNLDLLE 269

Query: 172 --ADLRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                   P         +  ++IP      +  D   +    +FP GE  A   L KFC
Sbjct: 270 LCHPPAKNPPSTRDKFNSLFDTDIPSEIADRKLDDEQKKRFRAIFPAGEHEARSRLEKFC 329

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWL 282
           +EKV  Y  +R+IP   GTS LS +L+ G +S R C    ++      L     G   W+
Sbjct: 330 EEKVGQYHNKRNIPHDSGTSNLSVHLASGTISSRTCVRYARDRNKTKKLDAGIEGIRVWI 389

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           +E+ WR+FY+H++  +P VCM KP+ P    IEW+ D    +AW  G TGFPI+DAAMRQ
Sbjct: 390 SEVAWRDFYKHVLVHWPYVCMNKPYKPEYANIEWSYDMDNFKAWCAGQTGFPIVDAAMRQ 449

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           ++ +GWMHNR RMI A FL KDLL+DWR+GE YFM  L+DGD ASNNGGW ++AS G D 
Sbjct: 450 MHAMGWMHNRCRMIVACFLAKDLLIDWRMGERYFMENLIDGDFASNNGGWGFSASVGVDP 509

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIV 461
            PYFRIFNP +Q ++FDP G +IR W+PEL  +  + IH P+            YP  IV
Sbjct: 510 QPYFRIFNPLLQSEKFDPDGEYIRKWVPELKGITGKAIHDPYGRGAGAQAKKTGYPQQIV 569

Query: 462 DHKKACHHTLNQYY 475
           DHK      L  Y 
Sbjct: 570 DHKGCRERALAAYK 583


>gi|196032015|ref|ZP_03099429.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
 gi|228928215|ref|ZP_04091256.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228946776|ref|ZP_04109081.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122697|ref|ZP_04251907.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
 gi|195994766|gb|EDX58720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
 gi|228660748|gb|EEL16378.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
 gi|228812900|gb|EEM59216.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228831262|gb|EEM76858.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 476

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 253/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGST----QEKILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
             ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+
Sbjct: 116 GMICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVS 175

Query: 190 PS--NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            S   +      P+ + ++ ++   E+ A    ++F   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-K 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 REWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|228953466|ref|ZP_04115511.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806205|gb|EEM52779.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 476

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 254/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      + +      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLKALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPINRVQSIKWGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQSSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K+++ L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKSMKE 474


>gi|320585730|gb|EFW98409.1| deoxyribodipyrimidine photo-lyase [Grosmannia clavigera kw1407]
          Length = 584

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 174/492 (35%), Positives = 256/492 (52%), Gaps = 25/492 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR  DN+AL  A   +      +I +++ +P+ W  H  +  +  F+  +L  
Sbjct: 89  VHWFKSDLRTLDNRALAMASEKAQMAGVPLIGLYVVSPQDWEAHLTAPVRVDFVLRTLAV 148

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKR 126
           +Q+ L++ GI                + S   +     LF N +YE++E+RR+   + + 
Sbjct: 149 LQRDLAELGIPLWMETVEQRKQIPHRILSLMDKWGANHLFANMEYEVDELRRETAMVRQC 208

Query: 127 LQHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                      D  ++PPG++ + +  + Y VYTP+ +A  Q++   +    P+   +  
Sbjct: 209 AAQGKSMAVVHDICVVPPGNLTSKSSGKAYAVYTPWFRAWKQHVYTNEHILGPIDNPKTQ 268

Query: 186 GPVTPSNIPRFFDYPFQAID---------------PMFPIGEQNALHILRKFCKEKVYYY 230
                       D P  +                  ++P GE  A+  L  FC E+V  Y
Sbjct: 269 AKTKTRWPAELMDCPIPSAPKGKTLGTKAEAKRFCTLWPAGEHEAMRRLEHFCDERVADY 328

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWRE 289
            ++RD PA++ TS LSPYL+ GVLS R      ++      L     G   W++E+ WR+
Sbjct: 329 SDERDFPAVEATSSLSPYLAAGVLSARTVIRTARDRTGAKTLDDGTEGFRVWISEVSWRD 388

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FYRH++  +P VC  KPF      I W+ +     AW +G TG+PI+DAAMRQLN  GW+
Sbjct: 389 FYRHILVAWPHVCFNKPFKLAYSGIAWSYNHDHFTAWTEGRTGYPIVDAAMRQLNKQGWL 448

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RMI ASFL KDLL+DWR+GE YFM  L+DGD ASN+GGW ++AS G D  PYFRIF
Sbjct: 449 HNRCRMIVASFLAKDLLLDWRLGERYFMEHLVDGDFASNSGGWGFSASVGVDPQPYFRIF 508

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNN---VPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKK 465
           NP +Q +RFDP GT+IR W+PEL +      + IH P+         +  YP PIV HK+
Sbjct: 509 NPILQSERFDPDGTYIRRWVPELQDSGIADNKAIHEPYGRGFGDQARAAGYPEPIVQHKQ 568

Query: 466 ACHHTLNQYYAA 477
           A    L  Y  A
Sbjct: 569 AREAALEAYKKA 580


>gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           B4264]
 gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264]
          Length = 476

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 252/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      + +      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLKALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLIWREFSYYLLYHYPFTAY-K 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K+++ L   YP PIVDHK A    L  Y   K+
Sbjct: 415 RRWIPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKNMKE 474


>gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 474

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 170/474 (35%), Positives = 238/474 (50%), Gaps = 14/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L  A   S  K+I VF   P       I+  +  ++   L +++K
Sbjct: 6   LFWHRRDLRLSDNIGLSKARERS-PKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  QKG      +        + L +         +F+N   E    +RD+ +   LQ +
Sbjct: 65  NYRQKGSQLLIIRGKPS----QTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT---G 186
            I  ++F D +L  PG +L  +   Y VYTPF K   Q           +  +       
Sbjct: 121 GIEVETFWDQLLQAPGQVLTLSKSPYTVYTPFWKNWSQLAKARPTTLENLQGLDKNEGEK 180

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                N+P   +  F   +P+    GE+ A   L +FC+  +  Y E R+ PA+ GTS+L
Sbjct: 181 LTETINLPTLENLGFTWQNPLPLTPGEKAANSTLEEFCQGVINNYQEDRNFPAVDGTSRL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           S  L  G +  R  W    E   +   +  K    +W  EL WREFY+H + F+P + +G
Sbjct: 241 SAALKFGTIGIRTIWTATLELLENCRAQEAKDSIITWQQELAWREFYQHCLYFFPELAVG 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             +        W  +    QAW QG TG+PI+DAAMRQLN  GWMHNR RMI ASFL KD
Sbjct: 301 -AYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L+++W+ GE+YFM +L DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++FDP+G +
Sbjct: 360 LIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEY 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR WLPEL +V T+Y+               YP PIVDH +        Y   K
Sbjct: 419 IRQWLPELASVDTEYLVT-GKIPRLERHRCGYPEPIVDHNQQQKEFKRLYSNQK 471


>gi|206969086|ref|ZP_03230041.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH1134]
 gi|206736127|gb|EDZ53285.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH1134]
          Length = 476

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 252/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    ++  +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLRHAIMDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      + +      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLKALGSTLIIRKGNTQ----EEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVSK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   W+K+  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL+++P +YIH P       L K ++ L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELSDIPNKYIHKPWEAPAHILQKANIKLGDTYPYPIVDHKAARERALCAYKSMKE 474


>gi|307726566|ref|YP_003909779.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
 gi|307587091|gb|ADN60488.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1003]
          Length = 499

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 178/500 (35%), Positives = 256/500 (51%), Gaps = 37/500 (7%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS- 54
           +T      LVW R DLR TDN ALY A  + + +V  VF+            W+      
Sbjct: 7   STDTFDTGLVWFRRDLRHTDNAALYYALKHCE-RVWCVFVFDTTILQPLIDKWQSRHPGT 65

Query: 55  ---ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
               R+  FI ASL ++ ++L  +G          + D ++ +     +  V  +F N  
Sbjct: 66  QAQDRRVEFILASLHELDEALRARGGGLVVL----YGDPVDLVPKLAAELEVDAVFANHD 121

Query: 112 YEINEVRRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
           YE   + RD+ + +RL       ++F D V+     +L    + + V+TP++ A ++ L 
Sbjct: 122 YEPAAIERDEAVRERLSDAGRALQTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQLT 181

Query: 171 QADLRSLPVPA-IRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFC 223
             DL+  PV        P+ P    +          P        P G   A  +L  F 
Sbjct: 182 SFDLKPFPVETYANRLAPLPPRLNRQLPTLEQLGFAPGNLGELELPTGMSGAQRLLDDFL 241

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             ++  Y E+RD PA +G S LS +L  G +S R       E  +        GA +WL+
Sbjct: 242 S-RIDSYAERRDFPAAKGPSYLSVHLRFGTVSIRTLARLAHEMSLQ---PDGRGAATWLS 297

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAM 340
           EL+WR+FY  ++A +P +  G  F    +++ W +         AW +G TG+P+IDAAM
Sbjct: 298 ELVWRDFYFMILAHHPRLAAGASFRADYDRLRWEQGPEAEAAFAAWCEGRTGYPLIDAAM 357

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
            QLN  G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D A+NNGGWQWAASTG 
Sbjct: 358 LQLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAASTGC 417

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSL 454
           D+ PYFRIFNP  Q ++FD +G FI+ +LP+L  +P ++IHAP     +        L  
Sbjct: 418 DAQPYFRIFNPVTQSEKFDAEGRFIKRYLPQLAKLPAKWIHAPWLAGAQRLAEYGVMLGE 477

Query: 455 NYPLPIVDHKKACHHTLNQY 474
           +YP PIVDH +A   TL ++
Sbjct: 478 DYPAPIVDHAQARARTLARF 497


>gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 483

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 165/491 (33%), Positives = 255/491 (51%), Gaps = 21/491 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A+   ++W R DLR+ DN+AL AA H S   +I V+I  P       + A Q+ +++
Sbjct: 2   AKDAVKPVILWFRRDLRLDDNQALNAA-HLSGRPIIPVYINEPAAAGTGPLGAAQAWWLH 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + +SL ++    Q        D++E L +   +     +F+NR+Y+ + +  D  
Sbjct: 61  HSLEALDRSLHER----QGELVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTH 116

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +++ L +  +  +SF   +L  P  ++      Y+VYTPF +AL            P   
Sbjct: 117 IKQELEKQAIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGAGEAEPPLEAPAKL 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              +       +  +   P +         ++  GEQ A   L  F ++++  Y E RD 
Sbjct: 177 RLASQRPASETLKSWKLLPTKPDWAKGFADLWTPGEQGARERLSAFVEDELKGYKENRDY 236

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA   TS LSP+L++G +SP + W+  +     +   P +    +  E+ WREF  HL+ 
Sbjct: 237 PAKPATSMLSPHLALGEISPARIWDATRGLSNRV---PAADIVHFRKEIAWREFSYHLLF 293

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P +   + +    +  +W  D    +AW++G TG+PI+DA MRQL   GWMHNR+RMI
Sbjct: 294 HFPRLA-SENWNDRFDGFKWRNDDGDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMI 352

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+KDL++DWR GE +F   L+D D A+N   WQW A +G D+ P+FRIFNP +QG+
Sbjct: 353 VASFLIKDLMIDWRDGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPMLQGE 412

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDL--SLNYPLPIVDHKKACHHT 470
            FDP G ++R  +PEL  +  +YIH    AP S LD+  +     YP PIVDH  A    
Sbjct: 413 TFDPDGDYVRAHVPELQRLGAKYIHRPFEAPKSALDEAGIILGQTYPKPIVDHASARDRA 472

Query: 471 LNQYYAAKKQS 481
           L  Y A K  +
Sbjct: 473 LAAYKATKDAA 483


>gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
 gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
          Length = 476

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 251/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          +      +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----EAFSMGEASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      +        E + S   +  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGRTE----EAILSLIEKLDITAVYWNICYDPDRLKSNQKMKMMLEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL    I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLESWIIKKKDNTEYKVFTPFYNAFQKQVIPKPVSKVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + I+ M+   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHIESMWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FAVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNIMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNAYPLPVVDHKAARERALCAYKSMKE 474


>gi|229145749|ref|ZP_04274130.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
 gi|296503680|ref|YP_003665380.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
 gi|228637730|gb|EEK94179.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
 gi|296324732|gb|ADH07660.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
          Length = 476

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 248/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQD----ETFSIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      +        E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++      +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YP PIVDHK A    L  Y + KK
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYKSMKK 474


>gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH187]
 gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
 gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           AH187]
 gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
          Length = 476

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 155/481 (32%), Positives = 252/481 (52%), Gaps = 22/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ +++          I +    +++ +++ V++
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VLPLYVYD----ETFSIGSASKWWLHHTIIDVKR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLEALGSTLIIRKGNTM----EEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GITCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEYFPWNNEKKLLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSMKE 474

Query: 480 Q 480
            
Sbjct: 475 S 475


>gi|326476092|gb|EGE00102.1| deoxyribodipyrimidine photo-lyase [Trichophyton tonsurans CBS
           112818]
          Length = 589

 Score =  425 bits (1092), Expect = e-116,   Method: Composition-based stats.
 Identities = 175/490 (35%), Positives = 255/490 (52%), Gaps = 19/490 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A     + +  +I ++I +PE    H  S  +   I  +L  
Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRALAT 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+  I                +   C      +LF N +YE++E+RR+  L +  
Sbjct: 160 LKSELSKNDIPLYMESIERRKGVPSRIVELCKTWGANQLFANIEYEVDELRREANLVRLC 219

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRL 184
             + I   + DD+ ++ PG +     + Y VYTP+ ++ +  L Q    L  +  PA+  
Sbjct: 220 AKQGIRFYTEDDTCVVTPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279

Query: 185 TGP------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                           T  N  +      +    M+P GEQ A   LR+F  +    Y  
Sbjct: 280 GDARNHFKDLFDSAVPTAPNQMKLSGAEQERFKKMYPEGEQEATRRLREFLSKNGKQYHA 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD  + Q TS LSPY S G LS R      ++   + L     G  +W++E+ WR+FY+
Sbjct: 340 KRDSMSSQFTSVLSPYFSCGALSARTAVRMARDANGNELAGKSPGYSTWISEVAWRDFYK 399

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  D     AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 400 HVLTNWPYICMNKCFKPEFTDLEWEYDPTKFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 459

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 460 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 519

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L
Sbjct: 520 RQSERFDPDGEYIRHWVPELRDVEGSAIHDPYGRGAEKIAEKNGYPRPIVNHTESRERAL 579

Query: 472 NQYYAAKKQS 481
            +Y  A + S
Sbjct: 580 AKYKKAAQGS 589


>gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium tumefaciens str. C58]
 gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium tumefaciens str. C58]
          Length = 479

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 170/496 (34%), Positives = 243/496 (48%), Gaps = 32/496 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   TA    +VW R DLR++DN AL AA  +    VI V+I          +   Q  +
Sbjct: 1   MSLKTA--PVIVWFRKDLRLSDNLALLAAVEHG-GPVIPVYIREKS---AGPLGGAQEWW 54

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  SL + G            D+   L     +     + +NR+Y+   +  D
Sbjct: 55  LHHSLAALSSSLEKAGGRLVLASG----DAERILRDLISETGADTVVWNRRYDPTGMATD 110

Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           K L+++L+      +SF   +L  P  +   +   Y+VYTPF +AL  +         P 
Sbjct: 111 KALKQKLRDDGLTVRSFSGQLLHEPSRLQTKSGGPYRVYTPFWRALEGSDEPHAPADPPK 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYV 231
               LT P       +  ++      P        ++  GE  AL  L  F    +  Y 
Sbjct: 171 S---LTAPKVWPKSEKLSNWKLLPTKPDWAKDFSDIWTPGETGALDKLDDFIDGALKGYE 227

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E RD PA   TS LSP+L+ G +SP   W+  K     +     +    +  E++WREF 
Sbjct: 228 EGRDFPAKPATSLLSPHLAAGEISPAAVWHATKGLSRHI---ASNDISRFRKEIVWREFC 284

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            HL+  +P +   K +    +   W  D    +AW +G TG+PI+DA MRQL   G MHN
Sbjct: 285 YHLLFHFPELGE-KNWNDSFDAFSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQHGTMHN 343

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMI ASFL+K LL+DWR GE++F   L+D D ASN   WQW A +G D+ P+FRIFNP
Sbjct: 344 RVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNP 403

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN--DLSLNYPLPIVDHKK 465
            +QG++FD  G ++R ++PEL  +  +YIH    AP   L K   +L   YPLPIVDH K
Sbjct: 404 ILQGEKFDGDGDYVRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIVDHGK 463

Query: 466 ACHHTLNQYYAAKKQS 481
           A    L  Y A KK +
Sbjct: 464 ARERALAAYAAVKKTT 479


>gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
 gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
          Length = 476

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 254/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      + +      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMMLEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMYHYLINKSTERQCSFFEKQVISFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+V+HK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVEHKAARERALCAYKSMKE 474


>gi|92112598|ref|YP_572526.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter
           salexigens DSM 3043]
 gi|91795688|gb|ABE57827.1| deoxyribodipyrimidine photo-lyase type I [Chromohalobacter
           salexigens DSM 3043]
          Length = 473

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 196/472 (41%), Positives = 265/472 (56%), Gaps = 9/472 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R+DLR  DN+AL AA       VIAVF+ +  QW++H   A +  F    +  ++
Sbjct: 5   QMVWFRSDLRTLDNRALSAAAERG--PVIAVFLTSIPQWQRHDHGANKIDFWLRGVAALR 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + LS   I     +   +D++ + L     Q   T L +NR+Y +NE RRD  +E+    
Sbjct: 63  EHLSGLNIPLLQRRIETYDEAPDALLKLAHQHGATALHFNREYPLNERRRDAAVERAFHD 122

Query: 130 RVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--SLPVPAIRLTG 186
             I  +   D+V   PG +L    + Y V+TPF KA  + L    L     P P  RL  
Sbjct: 123 AGIAVTGHTDAVAYAPGELLTGKGEPYSVFTPFAKAWHRQLEGHRLALTHAPAPQTRLAI 182

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              P+      D     +D   +P G++ A   L +F + +  +Y  QRD PA+ GTS+L
Sbjct: 183 EADPAPSRELPDACDTPLDASRWPAGQEEAGDRLERFLRFRGRHYRRQRDFPALPGTSEL 242

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++G+LS RQC   +  +    L    +G  +W NELIWREFY H+ A +P +   +
Sbjct: 243 SPYLALGMLSHRQCLQAVMSDNDGHLADGDAGLTAWANELIWREFYLHIAASFPDISRHR 302

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF P T  + W  D    +AW +G TG+P++DAAMRQL   GWMHNRLRM+TA FL K L
Sbjct: 303 PFQPHTRDLAWRDDDAGFRAWCEGRTGYPLVDAAMRQLVQCGWMHNRLRMVTAMFLSKHL 362

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +FM  L+DGD ASNNGGWQWAASTG D+ PYFRIFNPT Q +RFDP+G FI
Sbjct: 363 LIDWRRGEAFFMRHLVDGDFASNNGGWQWAASTGTDAAPYFRIFNPTTQAERFDPEGRFI 422

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            HWLPEL  +  +    P    +       Y LPIVDHK A    L+ + + 
Sbjct: 423 AHWLPELAPLAVKSRFFP---SEAQRRDTGYTLPIVDHKAARQRALDAFKSL 471


>gi|323529228|ref|YP_004231380.1| DNA photolyase FAD-binding protein [Burkholderia sp. CCGE1001]
 gi|323386230|gb|ADX58320.1| DNA photolyase FAD-binding protein protein [Burkholderia sp.
           CCGE1001]
          Length = 499

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 179/499 (35%), Positives = 258/499 (51%), Gaps = 37/499 (7%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGIS-- 54
             + +  LVW R DLR TDN ALY A  + + +V  VF+          ++W+       
Sbjct: 8   NDSFNTGLVWFRRDLRTTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDRWQTRHPGTQ 66

Query: 55  --ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
              R+  FI  SL ++ ++L  +G          + D  + +     Q +V  +F N  Y
Sbjct: 67  AQDRRVEFILGSLRELDEALRAQGGGLVVL----YGDPADLVPKLADQLQVDAVFINHDY 122

Query: 113 EINEVRRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           E   + RD+ + +RL        +F D V+     +L    + + V+TP++ A ++ L  
Sbjct: 123 EPAAIERDEAVRERLAETGRTFLTFKDQVIFERAELLTGQKKPFTVFTPYKNAWLKQLTS 182

Query: 172 ADLRSLPVPA----IRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCK 224
            DL+  PV      +    P     +P      F   +      P G + A  +L  F  
Sbjct: 183 FDLKPYPVETYATRLASLPPALDRQLPTLEQLGFAPGNLAELDLPTGMRGAQRLLDDFLT 242

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            ++  Y E+RD PA++G S LS +L  G +S R       E  +        GA +WL+E
Sbjct: 243 -RLDSYAERRDFPAVKGPSYLSVHLRFGTVSIRTLARLAHEMSLQ---PDGRGAATWLSE 298

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMR 341
           LIWR+FY  ++A +P +  G  F    +++ W +         AW +G TG+P+IDAAM 
Sbjct: 299 LIWRDFYFMILAHHPRLAGGASFKEEYDRLRWEQGPEADAAFAAWCEGRTGYPLIDAAML 358

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           QLN  G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D A+NNGGWQWAASTG D
Sbjct: 359 QLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDYDFAANNGGWQWAASTGCD 418

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLN 455
           + PYFRIFNP  Q ++FD  G FI+ +LP+L  +P ++IHAP     +        L  N
Sbjct: 419 AQPYFRIFNPITQSEKFDADGRFIKRYLPQLGKLPAKWIHAPWLAGAQRLAEFGVALGDN 478

Query: 456 YPLPIVDHKKACHHTLNQY 474
           YP PIVDH +A   TL ++
Sbjct: 479 YPAPIVDHAQARARTLARF 497


>gi|47528471|ref|YP_019820.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|47503619|gb|AAT32295.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
           str. 'Ames Ancestor']
          Length = 469

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/477 (33%), Positives = 252/477 (52%), Gaps = 22/477 (4%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
            + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K L 
Sbjct: 2   FQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVKKQLE 55

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV-I 132
             G      + S      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+H+  I
Sbjct: 56  ALGSTLIIRKGST----QEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHKGMI 111

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS- 191
           CK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + PV+ S 
Sbjct: 112 CKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVSLSV 171

Query: 192 -NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             +      P+ + ++ ++   E+ A    ++F   K+  Y E RD P     S L+PYL
Sbjct: 172 SELHLLPTIPWTSHMESIWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSMLAPYL 231

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           S G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP     KP  
Sbjct: 232 SFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTAY-KPLN 290

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              E   WN +  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK LL+ 
Sbjct: 291 KSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLVKHLLIP 350

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +IR W
Sbjct: 351 WQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYIRKW 410

Query: 429 LPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           +PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 411 VPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSMKE 467


>gi|229046850|ref|ZP_04192484.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
 gi|229110596|ref|ZP_04240162.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
 gi|228672847|gb|EEL28125.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
 gi|228724483|gb|EEL75806.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
          Length = 476

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 249/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I    Q     I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QEETFSIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      +        E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++      +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YI+ P    +         L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELKDIPNKYIYKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYKSMKE 474


>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
 gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
          Length = 477

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 165/482 (34%), Positives = 246/482 (51%), Gaps = 18/482 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W R DLR+TD   L AA       V+ VFI  P    +  +      +++ SL  +
Sbjct: 4   TTIFWFRQDLRLTDLPGLCAAAERG--AVLPVFIHDPSLGNEWSLGGASQWWLHYSLKSL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           Q S+  +G      + +  D     L +   +   + ++ +RQY+      +  L + L 
Sbjct: 62  QASIEARGGELILRRGAPED----VLTALIEESGASAVYSSRQYQPWATSLETTLHETLT 117

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--- 184
              +  K +  ++L  PGS+L      YKV+TPF +A +Q+    + RS+P     +   
Sbjct: 118 DEGIDYKRYAGTLLFEPGSVLTGGGTPYKVFTPFWRACLQSEAPREPRSIPDVEWHVGVR 177

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  V   N+           + ++  GE+ A   L  F    V +Y + RDIPA   TS+
Sbjct: 178 SESVEDWNLRPSNPNWADGWESLWSPGEEGATRRLDDFLAGTVKHYGDGRDIPAEAYTSR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +SPRQ W+   +     L +       +L+E+ WREF   L+  +P +   
Sbjct: 238 LSPHLKFGEISPRQIWHAA-QYAKQRLPEAAESIDKFLSEIGWREFCYTLLDQFPEMP-N 295

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           KPF    +   W      L+AW++G TG+PI+DA MR+L   G+MHNR+RMIT SFL K 
Sbjct: 296 KPFKAQFDHFPWAGTQKALKAWQKGLTGYPIVDAGMRELWQTGFMHNRVRMITGSFLTKH 355

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL  WR GE +F   L+D D+ASN   WQW A +G D+ PYFRIFNP  QG++FD  G +
Sbjct: 356 LLTHWRAGELWFWDCLVDADIASNACSWQWVAGSGADASPYFRIFNPIAQGEKFDKAGEY 415

Query: 425 IRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAK 478
           +R ++PE+ N+P +YIH P     S L+++ + L   YP PIVDHK A    L  Y   K
Sbjct: 416 VRRYVPEIANLPDKYIHKPWEAPASILEQSGIVLGDTYPEPIVDHKSARQSALAAYEEVK 475

Query: 479 KQ 480
             
Sbjct: 476 NS 477


>gi|16125677|ref|NP_420241.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus CB15]
 gi|221234432|ref|YP_002516868.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
 gi|13422791|gb|AAK23409.1| deoxyribodipyrimidine photolyase - classI [Caulobacter crescentus
           CB15]
 gi|220963604|gb|ACL94960.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
          Length = 483

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 169/472 (35%), Positives = 245/472 (51%), Gaps = 15/472 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLRI DN AL  A   S   VI ++I   E      +      ++  SL  +  
Sbjct: 18  IVWFRKDLRIADNPALRHAAQ-SGRPVIPLYILD-ETPGIRPMGGASLWWLDKSLKSLAA 75

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL   G      +      + E LD    Q     + +NR Y+     RD  ++  L+ R
Sbjct: 76  SLETLGTKLVLRKG----VAAEVLDQLIAQSGARSVVWNRLYDKPSTDRDAAIKAALRDR 131

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            + C+SF+  +L  P ++ N + Q YKV+TP+ +A  ++L    + + P   +       
Sbjct: 132 GVDCQSFNAGLLNEPWTVKNGSDQPYKVFTPYWRAAREHLTDVAVTAAPGHLVAPARFPA 191

Query: 190 PSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             ++  +  +P +        ++  GE  A   L  F K  +  Y +QRDIP ++ TS+L
Sbjct: 192 SESLASWNLHPTKPDWSKGFDLWTPGEAGAHARLDAFLKGPIKGYGDQRDIPGVEATSKL 251

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G + PRQ W   +    D    P + A  +L+E+ WREF   ++  +P +    
Sbjct: 252 SPHLHFGEIGPRQVWLATRSA-ADQGDIPLAEADKFLSEIGWREFNHSILYNWPHMPSAN 310

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P  +   W KD   L+AWK+G TG+PI+DA MR+L T G+MHNR+RMI ASFL+K L
Sbjct: 311 -FKPEFDGFPWVKDEGALEAWKRGQTGYPIVDAGMRELWTTGFMHNRVRMIVASFLIKHL 369

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           ++DWR GE +F   LLD DLA+N G WQW A +G D+ PYFRIFNP  QG++FDP+G ++
Sbjct: 370 MIDWREGEAWFWDTLLDADLANNVGNWQWTAGSGADAAPYFRIFNPIAQGEKFDPKGDYV 429

Query: 426 RHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           R W+PEL NV    IH P +            Y  PIVDH  A    L  Y+
Sbjct: 430 RRWVPELRNVSDDVIHKPWTKPLHLPAGAKRLYSRPIVDHAMARARALEAYH 481


>gi|242786742|ref|XP_002480865.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218721012|gb|EED20431.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 771

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 172/487 (35%), Positives = 259/487 (53%), Gaps = 21/487 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN+AL  A      ++  ++ ++I +P+    H  S  +  F   +L  
Sbjct: 278 VHWFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFTLRNLRV 337

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L    I           +  E +   C Q   + LF N +YE++E+RR+  L + L
Sbjct: 338 LQRELGTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRREAKLVRLL 397

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---------DLRSL 177
             + I  ++  DS ++ PG++ +   + Y VY+P+ +A +  L Q               
Sbjct: 398 ADKGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLRVLEPPGKN 457

Query: 178 PVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
              A    G +  S IP      R  D   Q  + M+P GEQ A   L +F   +V  Y 
Sbjct: 458 HESARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARKRLDEFITTRVKEYS 517

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           ++R +   Q T+ LSPYL+ GVLS R   ++ K+     L    +   SW++E+ WR+FY
Sbjct: 518 KKRSMVDGQYTAILSPYLASGVLSARTAVSKAKDANGGYLDGKNASLASWISEVAWRDFY 577

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P +CM K F P    + W  D+ L   W +G TG+PI+DAAMRQL    W+HN
Sbjct: 578 KHVLVHWPFICMNKCFKPEFTNVTWEYDTDLFTRWTEGQTGYPIVDAAMRQLRHDAWLHN 637

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI +SFL KDL++DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP
Sbjct: 638 RNRMIVSSFLSKDLMIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNP 697

Query: 412 TIQGKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHH 469
            +Q ++FDP G FIR W+PEL+++  ++ IH P+            YP PIV+H  +   
Sbjct: 698 LLQSEKFDPNGDFIRKWVPELSDIKDSKAIHDPYGRGAGAIAQKAGYPRPIVEHAASRVR 757

Query: 470 TLNQYYA 476
            L +Y  
Sbjct: 758 ALKRYKE 764


>gi|70990122|ref|XP_749910.1| deoxyribodipyrimidine photo-lyase Phr1 [Aspergillus fumigatus
           Af293]
 gi|66847542|gb|EAL87872.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           fumigatus Af293]
 gi|159130392|gb|EDP55505.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           fumigatus A1163]
          Length = 586

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 173/499 (34%), Positives = 263/499 (52%), Gaps = 19/499 (3%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58
           +A  A S  + W ++DLR+ DN+AL  A       +  +I ++I +P+    H +S  + 
Sbjct: 87  RAIGANSAVVFWFKSDLRLYDNRALRMAYETAKGCNIPLIGLYILSPQDLTAHLLSPARV 146

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
             I  +L Q+++ LS+  I           +  + +   C Q     L+ N +YE++E+R
Sbjct: 147 DLILRTLHQLKRDLSELDIPLYMETQEIRKNIPQRIVDLCQQWGANHLYANLEYEVDELR 206

Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---- 173
           R+  L +      I  ++  D+ ++PPG + +   + Y VY+P+ +  +  L +      
Sbjct: 207 REAKLVRLCAKNGIKFETAHDACVVPPGQVTSQQGKQYAVYSPWYRTWVAYLNENPGCLE 266

Query: 174 ----LRSLPVPAIRLTGPVTPSN------IPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                 S P  A +    +  S         +  +   Q +  ++P GE  AL  L  F 
Sbjct: 267 VSEEPGSNPGDARKYFKELFESEVPAAPEHKQLSEEEKQHLGHLYPAGEHEALRRLEAFL 326

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           +EK   Y E+R++ + Q TS LSPY + G+LS R      +      L     G   W+ 
Sbjct: 327 EEKGRDYAEERNMVSGQTTSILSPYFASGLLSARTAIEHARRANKGSLQHGDPGLVRWIG 386

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           E+ WREFYRH++  +P +CM K F P    +EW  +     AW++G TGFPI+DAAMRQ 
Sbjct: 387 EVAWREFYRHVLVHWPFICMNKCFKPEFTNLEWEYEEDRFTAWREGKTGFPIVDAAMRQA 446

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
               WMHNR RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  
Sbjct: 447 KQDKWMHNRTRMIVASFLSKDLLLDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQ 506

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVD 462
           PYFRIFNP +Q +RFDP G +IR W+PEL ++    IH P++       + N YP P+++
Sbjct: 507 PYFRIFNPLLQSERFDPDGEYIRKWVPELRDIQGAAIHEPYARGGGAIAAKNGYPRPMLN 566

Query: 463 HKKACHHTLNQYYAAKKQS 481
           H ++    L++Y  A +  
Sbjct: 567 HSQSRDLALHRYKRASESG 585


>gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 476

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 252/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQ+
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSIGSASKWWLHHAIIDVQR 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      +     + +E + S   Q  +T +++N  Y+   ++ ++ ++  L+ +
Sbjct: 60  QLEAVGSTLIIRKG----NILEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IRLTGP 187
            I CK F+  +LL P  I       YKV+TPF  A  + +V   +  +        L   
Sbjct: 116 GITCKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQIVPKPISKVQRIKGGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +       +   ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIRWTTHMESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L ++  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKWMYHYLIDKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|30021247|ref|NP_832878.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
 gi|229130975|ref|ZP_04259903.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
 gi|29896801|gb|AAP10079.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
 gi|228652473|gb|EEL08383.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
          Length = 476

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 248/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQD----ETFSIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      +        E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++      +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYKSMKE 474


>gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843]
 gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843]
          Length = 474

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 170/474 (35%), Positives = 239/474 (50%), Gaps = 14/474 (2%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L  A   S  K+I VF   P       I+  +  ++   L +++K
Sbjct: 6   LFWHRRDLRLSDNIGLSKARERS-PKIIGVFCLDPAILEGDDIAPARVAYLLGCLEELEK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  QKG      + +      + L +         +F+N   E    +RD+ +   LQ +
Sbjct: 65  NYHQKGSQLLIIRGNPS----QTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT---G 186
            I  ++F D +L  PG +L  +   Y VYTPF K   Q    +      +  +       
Sbjct: 121 GIEVETFWDQLLHAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPKTLENLQGLDENEGEK 180

Query: 187 PVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                N+P   +  F   +P+    GE+ A   L +FC+  +  Y E R+ PA  GTS+L
Sbjct: 181 LTETINLPTLENLGFTWQNPLPLTPGEKAAHSRLEEFCQGVINNYQEDRNFPAFDGTSRL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           S  L  G +  R  W    E   +    + K    +W  EL WREFY+H + F+P + +G
Sbjct: 241 SAALKFGAIGIRTIWTATLELLENCCAQEAKDSIITWQQELAWREFYQHCLYFFPELAVG 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             +        W  +    QAW QG TG+PI+DAAMRQLN  GWMHNR RMI ASFL KD
Sbjct: 301 -AYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L+++W+ GE+YFM +L DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++FDP+G +
Sbjct: 360 LIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQTQKFDPEGEY 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR WLPEL +V T+Y+               YP PIVDH +        Y   K
Sbjct: 419 IRQWLPELASVDTEYLVT-GKIPRLERHRCGYPEPIVDHNQQQKEFKRLYSNQK 471


>gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43]
 gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43]
          Length = 484

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 163/488 (33%), Positives = 246/488 (50%), Gaps = 29/488 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW RNDLR+ DN AL AA  +    V+ V+I  P       I   +  +++ SL ++
Sbjct: 11  PAIVWFRNDLRVNDNAALLAASSHKQ--VVPVYILEPA-ANTRAIGGARKWWLHHSLAKL 67

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L+  G      +     D    +     +     +++NR+Y+   +  D  L+  L+
Sbjct: 68  GEKLADLGAPLMLMRG----DPALLIAGLVEKTDAAAVYWNRRYDPAFLSSDASLKDALR 123

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + ++ +SF   +L  P  +       YKVY+PF +A+   +   +    P    RLT  
Sbjct: 124 AQDIVVESFAGQLLHEPTRVRTGNDTFYKVYSPFWRAIEGGIEDREPAPAPD---RLTAL 180

Query: 188 VTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                     D+      P         +  GE  A   L +F  E+V  Y   RD+P +
Sbjct: 181 ANAPQSETLSDWGLLPTKPDWARGLRETWKPGEDGAHERLDEFVSERVCGYASLRDVPGV 240

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           + TS+LSP+L+ G ++P Q    LK    D   K ++    +  E+ WREF  HL+   P
Sbjct: 241 ESTSRLSPHLANGEITPAQIIQALKASDADASPKDRT---VFRKEVGWREFSYHLLVNEP 297

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +          +   W  D   L AW++G TG+PI+DA MR+L   GWMHNR+RM+TAS
Sbjct: 298 DLPQQN-HNSRFDGFPWKDDETALLAWQKGVTGYPIVDAGMRELWRTGWMHNRVRMVTAS 356

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K L+VDWR GE +F   L+D D ASN   WQW A +G D+ PYFR+FNP IQG++FD
Sbjct: 357 FLTKHLMVDWREGERWFWDTLVDADPASNAASWQWVAGSGADAAPYFRVFNPIIQGEKFD 416

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473
           P G ++R ++PEL N+P+++IH P +  D         L   YP+PIVDH++A +  L  
Sbjct: 417 PDGDYVRRYVPELANLPSKFIHKPWTAPDDALAKAGVHLGETYPMPIVDHQQARNRALAA 476

Query: 474 YYAAKKQS 481
           Y   K  +
Sbjct: 477 YEKIKDAA 484


>gi|315046714|ref|XP_003172732.1| deoxyribodipyrimidine photo-lyase [Arthroderma gypseum CBS 118893]
 gi|311343118|gb|EFR02321.1| deoxyribodipyrimidine photo-lyase [Arthroderma gypseum CBS 118893]
          Length = 589

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 176/486 (36%), Positives = 256/486 (52%), Gaps = 19/486 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A     + +  +I ++I +PE    H  S  +   +  +L  
Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSLARSHNIPLICLYIFSPEDLTAHLCSRPRVDLMLRTLAT 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L++K I           +    +   C +     +F N +YE++E+RR+  L +  
Sbjct: 160 LKSELAKKDIPLYMESQEKRKEIPSRIVELCKKWGAKHIFANLEYEVDELRREARLVRLC 219

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I   + DD+ ++ PG++     + Y VYTP+ ++ +  L Q       V A     
Sbjct: 220 AEQAIKFATEDDTCVVDPGALATQQGKQYAVYTPWYRSWVAYLKQHPENLDLVDAPGANA 279

Query: 187 PVTPSNIPRFFDYP--------------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                +    FD                 Q    M+P GE  A+  LRKF  EK   Y +
Sbjct: 280 GDARKDFKDLFDSDVPKAPDQMKLSETEQQRFRDMYPEGEHEAMQRLRKFLSEKGRQYHD 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD  + Q TS LSPY S G LS R      K+   + L    +G  +W++E+ WR+FY+
Sbjct: 340 KRDFMSSQSTSVLSPYFSCGALSARTAVRIAKDTNSNELAGKNAGYTTWISEVAWRDFYK 399

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  D     AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 400 HVLVHWPFICMNKCFKPEFTDLEWEYDLTQFDAWCEGRTGFPIVDAAMRQLKHCAWMHNR 459

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR GE++FM  L+DGD ASNNGGW + +STG D  PYFRIFNP 
Sbjct: 460 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNNGGWGFGSSTGVDPQPYFRIFNPL 519

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L
Sbjct: 520 RQSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAQKIAEKNGYPKPIVNHSESRGKAL 579

Query: 472 NQYYAA 477
            +Y  A
Sbjct: 580 ERYKKA 585


>gi|317148478|ref|XP_001822264.2| deoxyribodipyrimidine photo-lyase [Aspergillus oryzae RIB40]
          Length = 588

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 172/486 (35%), Positives = 255/486 (52%), Gaps = 19/486 (3%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ DN+AL  A          +IA++I +PE    H  S  +      +L Q
Sbjct: 97  VHWFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTLRTLEQ 156

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L +  I        +  D  + +   C +     LF N +YE++E+RR+  L +  
Sbjct: 157 LKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAKLVRLC 216

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSLP 178
            ++ +      D+ ++PPG + +   + Y VY+P+ ++    L+             S P
Sbjct: 217 VENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEEPGSNP 276

Query: 179 VPAIRLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             A ++   +  S      N  R  D   +    ++P GE   L  L  F +EK   Y +
Sbjct: 277 GNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKATAYDD 336

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+  + Q TS LSPY + G LS R    + K+   + L + + G  SW++E+ WR+FY+
Sbjct: 337 MRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAWRDFYK 396

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  +     AW +G TGFPI+DAAMRQ+ +  WMHNR
Sbjct: 397 HVLVRWPFICMNKCFKPEFTDLEWEYNMDYFNAWCEGRTGFPIVDAAMRQMKSSAWMHNR 456

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIF+P 
Sbjct: 457 SRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFSPL 516

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IR W+PEL  +    IH P+     +    N YP PIVDH       L
Sbjct: 517 RQSERFDPDGDYIRRWVPELREIEGSAIHDPYDRGAGDLAEKNGYPRPIVDHATRRALAL 576

Query: 472 NQYYAA 477
           ++Y  A
Sbjct: 577 DRYKKA 582


>gi|119899747|ref|YP_934960.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
 gi|119672160|emb|CAL96074.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
          Length = 503

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 176/492 (35%), Positives = 261/492 (53%), Gaps = 34/492 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASL 65
           M+V LVW R DLR  D+ ALY A    + +V   F+   +        + R+  FI+A++
Sbjct: 24  MTVALVWFRRDLRCVDHAALYHALREHE-RVYCAFVFDTDILDALPTRADRRVEFIHAAV 82

Query: 66  LQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           +++ ++L          G             + E + +      V  ++ NR YE   + 
Sbjct: 83  VELDRALEALSREAGGSGSGLIVRHG----RAQEAIPALAQALGVDAVYVNRDYEPAAIA 138

Query: 119 RDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD+ + +RL +H    + F D V+     +L  A Q + V+TP++ A ++ L    L++ 
Sbjct: 139 RDRAVAERLAEHGRTLRDFKDQVIFDRDEVLTQAGQPFSVFTPYKNAWLRKLDPFYLQAY 198

Query: 178 PV--PAIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVE 232
           P+   A RL        +P      F+  D      P G   A  +   FC  ++  Y  
Sbjct: 199 PIAPRARRLAPKPAGEGVPALGRIGFEPTDLRGLALPTGASGARALFGDFC-GRIEDYRI 257

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD PA++G S LS +L  G +  R+            + +  +GA +WL+ELIWR+FY+
Sbjct: 258 ARDFPAVKGVSYLSTHLRFGTIPVRELAAY-------AVHQGGAGAQTWLSELIWRDFYQ 310

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            ++  +P V + + F P  ++I W+    L  AW++G TG+PI+DA MRQL   G+MHNR
Sbjct: 311 MILWHHPRV-VDQAFRPEFDRIRWDDAPALFDAWREGRTGYPIVDAGMRQLLRSGYMHNR 369

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMI ASFL KDL VDWR+GE +F + L D DLA+NNGGWQWAASTG D+ PYFRIFNP 
Sbjct: 370 LRMIVASFLTKDLGVDWRLGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPV 429

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466
            Q ++FDP+G FIR ++PEL  VP ++IHAP              +  +YP P+VDH  A
Sbjct: 430 TQSQKFDPEGRFIRRYVPELARVPDRHIHAPWQMDAATQSRACVQIGRDYPAPVVDHALA 489

Query: 467 CHHTLNQYYAAK 478
              TL ++   K
Sbjct: 490 RERTLARFAVTK 501


>gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
 gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
          Length = 487

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/495 (32%), Positives = 247/495 (49%), Gaps = 24/495 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A ++    +VW R+DLR+TDN AL  A   S    + V++   E  R  G +AR   +
Sbjct: 1   MPAESSAQAAIVWFRDDLRLTDNPALARAAE-SGRPFVCVYVLEREGTRPLGGAAR--WW 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L  +  SL+  G      +        E + +   +     +++NR+Y+      D
Sbjct: 58  LDGALRSLDASLAGHGGRLLVLEGDER----ETIAALAEELDAGAVYWNRRYDGIARETD 113

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L++ L+   I  +SF+ ++L  P  +   +   ++V+T + +A +++   +   + P 
Sbjct: 114 GALKRSLKEAGIEAESFNGALLREPWELQTGSGGAFQVFTAYWRAALKSGDVSAPLAEPS 173

Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230
                T P + +      D        P +  G        E+ AL +L +F  +K+  Y
Sbjct: 174 TWRFHTLPASLARRALKIDALGLLPTRPDWAGGLREAWVPTEEAALELLERFLDKKIRGY 233

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            E RD P    TS+LSPYL  G LS RQ W+       +      +    +++EL WREF
Sbjct: 234 GEARDRPDRPATSRLSPYLRFGQLSARQVWHAAMAAAREGGAAVAADIEKFVSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P +   + +    + + W  D     AW +G TG+P++DA MR+L T GWMH
Sbjct: 294 DTSLLYHFPELPT-RNYRERFDAMPWRDDEAGFTAWCRGRTGYPLVDAGMRELWTTGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL+K LL+DWR GE +F   L+D D+A+N+  WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVVASFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKND--LSLNYPLPIVDHK 464
           P  QG++FDP+G ++R W+PEL  +P   IH P       L+     L   YP PIVDH 
Sbjct: 413 PVTQGRKFDPEGDYVRRWVPELARLPADAIHEPWRAKPIVLEAAGVVLGQTYPEPIVDHD 472

Query: 465 KACHHTLNQYYAAKK 479
            A    L      K+
Sbjct: 473 AARQRALGALELTKR 487


>gi|47564301|ref|ZP_00235346.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
 gi|47558453|gb|EAL16776.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
          Length = 476

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 250/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++  + D R+ DN AL+ A  + +  V+ V++          I +    +++ +++ VQK
Sbjct: 6   IMMFQKDFRLYDNPALFEAAQSGE--VVPVYVQD----ETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G  F   +        E + S   Q  +T +++N  YE + ++ ++ ++  L+  
Sbjct: 60  QLKALGATFIIRKGKT----QEEILSLIEQLDITAVYWNICYEPDRLQSNQKMKMMLEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  +  +      +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQAIPKPTSKVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+ +Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWNPTEEGAYKTFKKFFSSKLTFYSEGRDFPNQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQSSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWDKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEPILQKANIQLGDTYPLPVVDHKAARERALCAYKSMKE 474


>gi|329133694|gb|AEB78728.1| DNA photolyase [Acinetobacter sp. Ver3]
          Length = 470

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 184/474 (38%), Positives = 269/474 (56%), Gaps = 9/474 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L+    DLR+ DN AL  A  + ++   AV I + EQW+ H  S  +  F    L  V
Sbjct: 1   MNLIGFSQDLRVRDNTALMEATRHGNS--CAVVILSHEQWKLHDDSEIKIDFYLRQLKSV 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L Q  I         ++D    L ++  + +VT +  N +  +NE+ RD  ++  L+
Sbjct: 59  ENELKQFNIPVMVEIVPQWEDVPARLLTFANKYQVTVIHANIEIGVNELHRDAQVQTLLE 118

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            H+V  + + D  + P GSI N   Q Y+V   +++A  + L  + L+ L VP ++    
Sbjct: 119 SHKVTVEYYHDRTIFPLGSIRNKTHQPYQVLGAYKRACYEILNISVLQPLAVPKVQPHEL 178

Query: 188 VTPSNIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +   +  +       YP   +   +P+GE  AL +L KF  E +  Y +QRD P I  TS
Sbjct: 179 IQRFHTFKIPSIHDFYPDAQVKYQWPVGESFALQMLEKFVDENLEPYKQQRDFPNIDATS 238

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLSPYL++G++S RQC   +             G  +WL+EL+WREFY+H++  +P +  
Sbjct: 239 QLSPYLNLGIVSIRQCLAAIFSRSNGNFHLYSDGQQTWLDELLWREFYQHILFDFPRLSK 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +PF   T  + W      L AWK G TG PI+DA +RQ+   GWMHNR+RMI A FL K
Sbjct: 299 YQPFNLNTSNVPWRDAPDELNAWKFGQTGIPIVDAGIRQMLETGWMHNRVRMIVAMFLSK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIFNP  Q ++FD QG 
Sbjct: 359 NLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPISQSQKFDSQGN 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +IR W+PEL ++  + IH P++     +L LNYP PIVD K +    L  + +A
Sbjct: 419 YIRKWVPELAHLDAKIIHEPYA--KNPNLKLNYPKPIVDLKMSRQRALAAFKSA 470


>gi|229151347|ref|ZP_04279551.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
 gi|228632137|gb|EEK88762.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
          Length = 476

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 253/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I          I +    +++ +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYIQD----ETFSIGSAAKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      + +      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +       + P  
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGSSLPTS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS   +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFSQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPYPIVDHKAARERALCAYKSMKE 474


>gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 474

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/484 (33%), Positives = 240/484 (49%), Gaps = 25/484 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V ++W R DLR+ DN AL AAC     K++ ++I                 +++ SL  
Sbjct: 4   PVSIMWFRQDLRVKDNPALNAACDMG--KIVPIYIFDESAPDGRMPGGASKWWLHHSLKS 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-R 126
           + K L+    +F+        D    +         + +F+NR YE  ++ RDK ++K  
Sbjct: 62  LNKRLNGHLQIFK-------GDPQTLIPKLMESFNASSIFWNRCYEPWQINRDKAIKKSL 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLT 185
           L       SF+ S L  P  +L      Y+V+TP+ +   +Q       ++ P       
Sbjct: 115 LGSDYEAHSFNGSSLWEPMKVLKKDGTPYRVFTPYYKNGCLQIEEPRYPKAPPARITYAD 174

Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                  +      P       I   +  GE  A   L  F +     Y + RDIP+ +G
Sbjct: 175 VDDNSDGLAALALLPTIKWDDTIAKEWTPGEDGAADNLSDFIENSARRYKDGRDIPSAKG 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G +SP Q W  +K+ F            ++L+EL WREF  +L+  +P++
Sbjct: 235 TSRLSPHLHFGEVSPNQVWYAIKDRF---GTSEDKSIETYLSELGWREFSYYLLFHFPTL 291

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K F    +K  W  D+  L+AW+ G TG PI+DA MR+L   G+MHNR+RMI  SFL
Sbjct: 292 P-NKNFNDKFDKFPWRTDAKALKAWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFL 350

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK+LL+ W  GE +F   LLD DLASN+  WQW A +G D+ PYFRIFNP +QG++FD +
Sbjct: 351 VKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKK 410

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYY 475
           G ++R + PELN +  +YIH P             +L  +YP PIVD K +    L+ + 
Sbjct: 411 GGYVRQYCPELNGLSDKYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRALDAFQ 470

Query: 476 AAKK 479
             K+
Sbjct: 471 TLKE 474


>gi|228959394|ref|ZP_04121085.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800294|gb|EEM47220.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 476

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 248/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I          I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNLALFEAVQSGE--VLPVYIQD----ETFSIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      +        E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++      +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERALCAYKSMKE 474


>gi|228940236|ref|ZP_04102807.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973152|ref|ZP_04133742.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979734|ref|ZP_04140058.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
 gi|228780047|gb|EEM28290.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
 gi|228786555|gb|EEM34544.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819362|gb|EEM65416.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326940880|gb|AEA16776.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 476

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 249/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V+I    Q     I +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYI----QEETFSIGSASKWWLHHAVIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      +        E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGRTE----EEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + +
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYR 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL  +P +YIH P    +         L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELRYIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERALCAYKSMKE 474


>gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
 gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
          Length = 476

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 252/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ V+K
Sbjct: 6   IVMFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFPMGSASKWWLHHAIIDVKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G      + +      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+ +
Sbjct: 60  QLETLGSTLIIRKGNT----QEEIFSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDK 115

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            I CK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIVCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           +  S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LFVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   W+K+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YP PIVDHK A    L  Y + K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPFPIVDHKAARERALCAYKSMKE 474


>gi|229070649|ref|ZP_04203886.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
 gi|229080332|ref|ZP_04212857.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
 gi|228703001|gb|EEL55462.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
 gi|228712471|gb|EEL64409.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
          Length = 476

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 252/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          I +    ++  +++ VQK
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPVYVQD----ETFSIGSAAKWWLRHAIMDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      + +      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLKALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISRVQSIKWGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A    +KF   K+  Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K+++ L   YP PIVDHK A    L  Y   K+
Sbjct: 415 RRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKNMKE 474


>gi|67516211|ref|XP_657991.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4]
 gi|40747330|gb|EAA66486.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4]
 gi|259489370|tpe|CBF89585.1| TPA: DNA photolyase (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 567

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 173/499 (34%), Positives = 263/499 (52%), Gaps = 21/499 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           A TA +  + W ++DLR+ DN+AL  A          +I ++I +PE    H  S  +  
Sbjct: 70  AMTANAAVVHWFKSDLRLHDNRALQMAYRVAREHKIPLIGLYILSPEDLTAHLSSPARVD 129

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
               +L Q+++ L +  +       +   D    + + C +     LF N +YE++E+RR
Sbjct: 130 LTLRTLEQLKRDLGELDVPLYMETQACRKDIPRRIINLCQEWGANHLFANLEYEVDELRR 189

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------ 172
           +  L +      I  ++  D  ++PPG + +   + Y VY+P+ ++ +  L +       
Sbjct: 190 EAKLIRLCAENGIRFETAHDMCVVPPGVLSSQQGRQYAVYSPWFRSWLAFLNENPEYLEV 249

Query: 173 --DLRSLPVPAIRLTG-------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
             D  S P  A R          P TP N           +   FP GE   L  L +F 
Sbjct: 250 SEDPTSNPGDARRYFKELFECPVPATPENKRFDDVEKADRVRRAFPAGEHEGLRRLEEFL 309

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           ++    Y ++R+  + + TS+LSPY + G LS R    + +E     + + ++G  SW++
Sbjct: 310 EKATA-YDDERNFLSGETTSKLSPYFASGSLSARTAVAKAREANAGKISRGEAGYISWIS 368

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           E+ WR+FY+H++  +P +CM K F      I+W+ ++   +AW  G TG+P++DAAMRQL
Sbjct: 369 EVAWRDFYKHVLVHWPFICMNKCFKFEFTNIDWSYNNTHFEAWAAGKTGYPLVDAAMRQL 428

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           +   WMHNR RM+ +SFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  
Sbjct: 429 HATAWMHNRCRMVVSSFLCKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQ 488

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVD 462
           PYFRIFNP  Q +RFDP G FIR W+PEL  V    IHAP+     +    N YP PIVD
Sbjct: 489 PYFRIFNPIRQSERFDPDGEFIRRWVPELRGVEGNAIHAPYERGAGDIARANGYPEPIVD 548

Query: 463 HKKACHHTLNQYYAAKKQS 481
           H +     L +Y  A + +
Sbjct: 549 HARQRGVALRKYKDAARGA 567


>gi|224823842|ref|ZP_03696951.1| Deoxyribodipyrimidine photo-lyase [Lutiella nitroferrum 2002]
 gi|224604297|gb|EEG10471.1| Deoxyribodipyrimidine photo-lyase [Lutiella nitroferrum 2002]
          Length = 469

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 173/481 (35%), Positives = 257/481 (53%), Gaps = 22/481 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L W R DLR+ D+ ALYAA  +S+ +V+ VF+   +  +      R+  FI+ SL++
Sbjct: 3   TTALCWFRRDLRLDDHAALYAALRHSE-RVVCVFVFDRDILKHLPAQDRRVDFIWHSLVE 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ L   G           D     + +   +   + ++ +R YE     RD  + +RL
Sbjct: 62  LKEQLCALGSDLVVVSGRPVDC----IPALAQEHGASTVWASRDYEPAACLRDAAVAERL 117

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLT 185
            +H    ++  D V+     +L    + Y V+TP+R A ++ L    L++ P    +   
Sbjct: 118 SRHGTRLETVKDQVIFEQDEVLTVNSKPYTVFTPYRNAWLKKLTPFFLQAYPSTRYLNRL 177

Query: 186 GPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             +  + +P   D  F            G   A  +   F  +++ +Y + RD PA +G 
Sbjct: 178 ARLAETPLPSLADLGFTDTGLGRLGIRAGMAGAAAVFTDF-GQRIEHYQQWRDFPAAKGV 236

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS +L  G +S RQ      ++         +GA +WL+ELIWREFY+ L+  YP V 
Sbjct: 237 SYLSVHLRFGTISIRQLAQFAWQQ-------GSAGATTWLSELIWREFYQQLLWHYPHV- 288

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           + + F P   ++ +  D  L  AW  G TG+P++DAAMRQL   G+MHNRLRM+TASFLV
Sbjct: 289 VEESFKPEYRQLGFPNDETLFAAWCAGRTGYPLVDAAMRQLAYSGYMHNRLRMVTASFLV 348

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLLVDWR GE YF  +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q ++FDP+G
Sbjct: 349 KDLLVDWRWGERYFAEKLIDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSQKFDPEG 408

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND---LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            FIR ++PEL  +  + IHAP           L  +YP PIVDH +     L  +   +K
Sbjct: 409 KFIRRYVPELAALDNKAIHAPWQAKVLPGGFLLGRDYPRPIVDHAEQRTQALALFGQRQK 468

Query: 480 Q 480
            
Sbjct: 469 A 469


>gi|331656728|ref|ZP_08357690.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           TA206]
 gi|331054976|gb|EGI26985.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Escherichia coli
           TA206]
          Length = 382

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 208/385 (54%), Positives = 274/385 (71%), Gaps = 5/385 (1%)

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
           C + R+T LFYN QYE+NE  RD   E+ L+  V+C+ FDDSV+LPPG+++    +MYKV
Sbjct: 2   CAENRITHLFYNYQYEVNERARDVQAERTLR-NVVCEGFDDSVILPPGAVMTGNHEMYKV 60

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNAL 216
           +TPF+ A ++ L +     +  P +R +G + P+      +YP Q+ D   FP+ E+ A+
Sbjct: 61  FTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPAPSITL-NYPRQSFDTAHFPVEEKAAI 119

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
             LR+FC+     Y +QRD PA++GTS+LS  L+ G LSPRQC +RL  E   +L     
Sbjct: 120 AQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPG 179

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
               WLNELIWREFYRHLM +YPS+C  +PFI WT++++W  +   L+AW++G TG+PI+
Sbjct: 180 SV--WLNELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIV 237

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+NNGGWQWAA
Sbjct: 238 DAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAA 297

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456
           STG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P  W  K  ++L+Y
Sbjct: 298 STGTDAAPYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWAQKAGMTLDY 357

Query: 457 PLPIVDHKKACHHTLNQYYAAKKQS 481
           P PIVDHK+A   TL  Y  A+K +
Sbjct: 358 PQPIVDHKEARLRTLAAYEEARKGA 382


>gi|88705106|ref|ZP_01102818.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
 gi|88700801|gb|EAQ97908.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
          Length = 482

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 152/482 (31%), Positives = 244/482 (50%), Gaps = 16/482 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ D  AL AA  +   +V+ ++I   +      +      +++ SL  +
Sbjct: 4   TVILWFRQDLRLNDLPALQAASRDG-RRVLPLYIFDEDSPGDWVMGGASRWWLHHSLSAL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
            + +  +G    + +  +     E L   C     T ++ +R+YE      +K+L + L 
Sbjct: 63  ARDIEDQGGKLIFRRGKSR----EVLGDICKSTDATAVYCSRRYEPWASEEEKMLHEDLG 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAIRLT 185
              +  K +  ++L  PG+++  +   YKV+TPF +A ++        +  +       +
Sbjct: 119 NSDIDFKRYGGTLLHEPGNVMTQSGGPYKVFTPFWRACLELDRAEPVPVPDVTWSTFTKS 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +         + +  +  GE  A   L  F +E V  Y ++RD PA + +S+L
Sbjct: 179 DALDDWQLRPTSPNWAASWEEYWTPGEDGAQQRLHDFLEESVSRYADERDFPAEEVSSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G LSPRQ W   +++ ++     K+    +  E+ WREF  HL+ F+P +   K
Sbjct: 239 SPHLHHGELSPRQVWAMCEQKKLETPASEKA-IKKFQAEIGWREFSYHLLHFFPEIPE-K 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F        W  D   L+ W+QG TG+PI+DA MR+L   G MHNR+RM+ ASFL K L
Sbjct: 297 AFKENFADFPWQPDKTRLERWQQGQTGYPIVDAGMRELWATGTMHNRIRMVVASFLCKHL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L  WR GE++F   L+D D+ASN   WQW A +G D+ PYFRIFNP  QG++FD  G ++
Sbjct: 357 LQHWRSGEDWFWDTLVDADMASNGCSWQWVAGSGADAAPYFRIFNPITQGEKFDKHGDYV 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PE+  +P +Y+H P     +        L  +YP PIVDHK+A    L+ Y   K 
Sbjct: 417 RQWVPEIARLPNKYLHKPWEASKEALEEAGIKLGSDYPEPIVDHKEARQAALDAYEDIKG 476

Query: 480 QS 481
            +
Sbjct: 477 SN 478


>gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
          Length = 482

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 178/490 (36%), Positives = 262/490 (53%), Gaps = 20/490 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    ++W R DLR+ DNKAL AA H S   +I+++I  PE      + A Q+ +++
Sbjct: 2   AKDAAKPVILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQAWWLH 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL ++    +        +++E L S   Q     +F+NR+Y+   +  D  
Sbjct: 61  HSLEALDGSLRKR----RGGLSLASGEALEVLRSLIKQSDADAVFWNRRYDPPGISIDAR 116

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV--QADLRSLPV 179
           +E  L+ R I  KSF   +L  P  ++  +   Y+VYTPF +AL  ++     D+ S   
Sbjct: 117 IEHELEKRAIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRALESSIEAEPLDIPSKLQ 176

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            A +L G     +       P  A +   +   GE+ A   LR F ++++  Y E RD P
Sbjct: 177 LASKLPGSEKLESWKLLSTQPDWASNFADLCTPGEEGAQEKLRTFIEDRLDGYKENRDYP 236

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A   TS LSP+L++G +SP + W+  +     +   P +    +  E+ WREF  HL+A 
Sbjct: 237 AKPATSMLSPHLALGEISPARIWDATRGLSKHV---PAADIVHFRKEIAWREFSYHLLAH 293

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +     +    +  EW +     +AW +G TG+PI+DA MRQL   GWMHNR+RMI 
Sbjct: 294 FPRLATAN-WDDRFDGFEWRRAEKDFKAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIA 352

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL+KDL+VDWR GE +F   L+D D A+N   WQW A +G D+ P+FRIFNP +QG++
Sbjct: 353 ASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEK 412

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHKKACHHTL 471
           FDP G F+R  +PEL  +  +YIH    AP S LD  D  L   YP P+VDH  A    L
Sbjct: 413 FDPDGDFVRAHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGARKRAL 472

Query: 472 NQYYAAKKQS 481
             Y A +  +
Sbjct: 473 AAYNAIRGAA 482


>gi|253997258|ref|YP_003049322.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8]
 gi|253983937|gb|ACT48795.1| Deoxyribodipyrimidine photo-lyase [Methylotenera mobilis JLW8]
          Length = 473

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 172/480 (35%), Positives = 248/480 (51%), Gaps = 25/480 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
           S  LVW R DLR  D+ ALY A   S  +V  VF+   +   Q    + R+  FI+ S+ 
Sbjct: 4   STSLVWFRRDLRDYDHAALYYALKASQ-QVYCVFVFDTDILNQLSDKADRRVEFIWESVQ 62

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +++ +L Q+G        S    +   +       +   +F N  YE + + RD  + ++
Sbjct: 63  ELKTALQQRGSDLIVLHGS----AQHEVPQLAQTLQAQAVFANHDYEPSAIARDAQVAQQ 118

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRL 184
           LQ H +    + D  +     +L  A + Y V+TP++ A ++ +    L++ PV   +  
Sbjct: 119 LQAHDIDFHHYKDQAIFEKDEVLTMAHKPYSVFTPYKNAWLKTVNDFYLKAYPVEHYLNK 178

Query: 185 TGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              + P  +     + FQ         P G   +  +   F  E++ +Y E RD PA++G
Sbjct: 179 LAKIQPQPLASLESFGFQRTNLSSLRLPTGMSGSATLFDDFI-ERIKHYKEARDFPAVKG 237

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS +L  G +S RQ      +           GA +WL+ELIWR+FY  ++   P +
Sbjct: 238 VSYLSVHLRFGTISIRQLARTAMQI-------GGFGAETWLSELIWRDFYFQILHHNPQL 290

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             GK F    E I +   + L  AW +G TG+P++DAAMRQLNT G+MHNRLRM+ ASFL
Sbjct: 291 EAGKAFKTEFEAIAFPNSATLFTAWCEGKTGYPLVDAAMRQLNTTGFMHNRLRMVAASFL 350

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDLL+DWR GE YF   L+D D ++NNGGWQWAASTG D+ P+FRIFNP  Q +RFD  
Sbjct: 351 VKDLLIDWRWGERYFAENLIDFDFSANNGGWQWAASTGCDAQPWFRIFNPITQSERFDGH 410

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           G FIR ++ EL     + IHAP     +        +  NYP PIVDH       L+ Y 
Sbjct: 411 GKFIRKYVAELAQCNDKEIHAPWLMSAQRQSSINTVIGQNYPKPIVDHATQRERVLSLYK 470


>gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
 gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
          Length = 471

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 167/486 (34%), Positives = 249/486 (51%), Gaps = 29/486 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + S+ + W R DLR++DN AL AAC   +  VI ++I   +++          +++Y SL
Sbjct: 2   SASIVIHWFRQDLRLSDNPALSAACEAGE--VIPLYILNDKEYGAREFGGATKNWLYYSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + +SL  + ++ +        D    ++S   +     +F+NR YE   V  D  L+ 
Sbjct: 60  KALNESLKGQLLIRR-------GDPAVIINSLIQETGAAGVFWNRCYEPWRVEHDAQLKT 112

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLP----V 179
            L+   I  KSF+ S+L  P  +       YKV+TPF RK  +Q         +P    +
Sbjct: 113 DLEENGITAKSFNGSLLWEPWQVGKPDGSPYKVFTPFYRKGCLQAEEPRKPLPVPDQLRI 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             +   G ++   +    D P+ A +   +  GE+ A + L  F ++ +  Y + R+ PA
Sbjct: 173 HPLNTEGALSIDELNLLEDRPWSAQVSSHWEHGEKAAQNRLYAFFEDGLSDYKDGRNFPA 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  TS+LSP+L  G +SP Q W  L         +       + +EL WREF   L+   
Sbjct: 233 LTHTSRLSPHLHFGEISPNQIWWVLGSH------EETRDIDHFRSELGWREFSYSLLFNN 286

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PS+          +   W  D   L AW++G TG PI+DA MR+L   G+MHNRLRMI  
Sbjct: 287 PSLPKSN-LNEKFDNFPWLSDDQRLLAWQKGQTGVPIVDAGMRELWQTGYMHNRLRMIVG 345

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK+LL+DWR+GEE+F   L+D DLA+N+  WQW A  G D+ PYFRIFNP +QG++F
Sbjct: 346 SFLVKNLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAPYFRIFNPILQGEKF 405

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472
           D  G + R +LPEL ++P +Y+  P              L  NYPLPIVD KK+    L 
Sbjct: 406 DAHGDYTRRFLPELKDLPDKYLFKPWEAPKDVLKGAGVTLGENYPLPIVDLKKSRDEALR 465

Query: 473 QYYAAK 478
            +   K
Sbjct: 466 AFEEIK 471


>gi|239994036|ref|ZP_04714560.1| DNA photolyase [Alteromonas macleodii ATCC 27126]
          Length = 467

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 162/480 (33%), Positives = 241/480 (50%), Gaps = 25/480 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ DN AL AAC     K++ ++I                 +++ SL  + K 
Sbjct: 1   MWFRQDLRVKDNPALNAACDMG--KIVPIYIYDDTAPNGREPGGASKWWLHHSLSSLNKR 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHR 130
           L+    +F+        D    +           +F+NR YE  ++ RDK ++K L +H 
Sbjct: 59  LNGHLQIFK-------GDPQTLIPKLMKSFNAKGIFWNRCYEPWQINRDKTIKKTLIEHE 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
               S + S+L  P  +L      Y+V+TP+ K     + +      P   I        
Sbjct: 112 YEAHSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVEEPRYPKAPPARITYADVDND 171

Query: 191 SNIPRFFDY-----PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           S+     D          I+  +  GE  A   L  F +     Y + RDIP+  GTS+L
Sbjct: 172 SDGLTSLDLLPSINWDATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSANGTSRL 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G +SP Q W  +K++F +   K      ++L+EL WREF  +L+  +P++   K
Sbjct: 232 SPHLHFGEVSPNQVWYAIKDKFGNSEDK---SIETYLSELGWREFSYYLLFHFPTLP-NK 287

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    +K  W  D+  L+AW++G TG PI+DA MR+L   G+MHNR+RMI  SFLVK+L
Sbjct: 288 NFNEKFDKFPWRTDAKALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVKNL 347

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W  GE +F   LLD DLASN+  WQW A +G D+ PYFRIFNP +QG++FD +G ++
Sbjct: 348 LLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGNYV 407

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R + PEL  +  +YIH P             +L   YP PIVD K +    L+ +   K+
Sbjct: 408 RKYCPELKKLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAFQTLKE 467


>gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
 gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae
           NSW150]
 gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
 gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella
           longbeachae NSW150]
          Length = 472

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/481 (34%), Positives = 253/481 (52%), Gaps = 15/481 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVW R DLR+ DN A   AC +    VI ++I      +   +   Q+ ++Y SL 
Sbjct: 1   MTTALVWFRFDLRLNDNPAFIEACSHHQ-FVIPLYIYD---EKNSVLGGAQAWWLYHSLT 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL+Q+G+     +     D +E +        ++ +++NR YE   + RDK ++  
Sbjct: 57  SLSNSLAQRGLNLILRKG----DPLEIILDLAKTVSISSVYWNRCYEPVAISRDKGIKAT 112

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I   S + S+L  P +I N +   +KV+TP+ K   Q +      +L    + + 
Sbjct: 113 LLERGIDVHSSNGSLLHEPWTIRNKSGDYFKVFTPYWKHCKQLINIQRPMNLEHRPVGVE 172

Query: 186 GPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                 N  +       A      +  GE  A   L++F +  +  Y   RD P    TS
Sbjct: 173 VQSELLNDWKLLPTINWAARFSEYWIPGEGGAQQKLKEFIEHHLNGYKNNRDFPIKNATS 232

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L  G +SP      ++   ++      + A  +L+EL WREF  +L+  +P +  
Sbjct: 233 RLSPHLHFGEISPWTILRAIELAKLNPNC-DLASAEHFLSELGWREFSVYLLYHFPKLP- 290

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F    +   W+ D  LL  W++G TG+PIIDA MR+L   G+MHNR+RMI ASFL K
Sbjct: 291 SENFRNEFDAFPWHNDEKLLSYWRRGLTGYPIIDAGMRELWATGYMHNRVRMIAASFLTK 350

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR+G ++F+  L+D DLA+N+  WQW A  G D+ PYFRIFNP +Q ++FD  G+
Sbjct: 351 GLLIDWRLGADWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDADGS 410

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKKQS 481
           +IRHW+PEL+ + +Q IHAP   +      LN  YP PI+DH +A    LN Y   K+  
Sbjct: 411 YIRHWVPELSQLDSQSIHAPWESVGSERFYLNTKYPKPIIDHHEARTRALNYYNQLKRND 470

Query: 482 L 482
           L
Sbjct: 471 L 471


>gi|254489691|ref|ZP_05102887.1| deoxyribodipyrimidine photolyase family [Methylophaga thiooxidans
           DMS010]
 gi|224465100|gb|EEF81353.1| deoxyribodipyrimidine photolyase family [Methylophaga thiooxydans
           DMS010]
          Length = 464

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 193/472 (40%), Positives = 274/472 (58%), Gaps = 12/472 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              LVWLRNDLR+ DN A+  A    D  +  VFIATP+QW+QH  SA +     AS+  
Sbjct: 3   PTQLVWLRNDLRLDDNPAISQAQQQGDLHL--VFIATPKQWQQHDESAAKQGLKAASIED 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L++ G+ F   +   F D  + L ++C Q+ +  +++N++  ++E RRD  +   L
Sbjct: 61  INQQLAKLGVPFTILETDWFADIPKLLKTFCQQKNIRDIWFNQETPLDERRRDDAVIDVL 120

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   V C + D  +++    +L    + +KV+TP+ +  +Q L +      PVP  +   
Sbjct: 121 EGFGVNCHALDADLIVTV-PVLTQQNEPFKVFTPYYRRWLQILQETQKPPYPVPDKQGEA 179

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                  P + D      D ++P  E + L  L +FC+ KV  Y + RDIPA  GTS LS
Sbjct: 180 IAVDLLKPGWSD---DYRDDLWPADEASVLKKLSQFCRNKVKAYPKYRDIPAESGTSTLS 236

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYLSIG + PR+    ++    +  +  +     WL EL WR+FYR L+  +P + M KP
Sbjct: 237 PYLSIGRIGPRRLLASIQYHCSEQGLHWQDN--DWLRELAWRDFYRQLLLHFPRLSMEKP 294

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F P T+ + W  D     AW +G TGFPI+DAAMRQL   GWMHNRLRMITASFL K LL
Sbjct: 295 FKPETDNVVWRDDETGFHAWCEGKTGFPIVDAAMRQLQQTGWMHNRLRMITASFLTKLLL 354

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE++FM  LLDG+ A+NNGGWQW+ASTG D+ PYFR+FNPT Q +RFDP G FIR
Sbjct: 355 IDWRRGEQFFMQHLLDGEFAANNGGWQWSASTGVDAAPYFRVFNPTRQSERFDPDGEFIR 414

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            ++PEL  +  + IH P   L        YP+PI+D+K A    ++ +   K
Sbjct: 415 RFVPELKKLSGKQIHNPSDQLRTE---TGYPMPIIDYKPARQTAIDAFADLK 463


>gi|242786746|ref|XP_002480866.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218721013|gb|EED20432.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 593

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 172/487 (35%), Positives = 259/487 (53%), Gaps = 21/487 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN+AL  A      ++  ++ ++I +P+    H  S  +  F   +L  
Sbjct: 100 VHWFKGDLRLNDNRALKMASELAAKNEIPLVCMYIMSPQDLTAHCSSPARVDFTLRNLRV 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+ L    I           +  E +   C Q   + LF N +YE++E+RR+  L + L
Sbjct: 160 LQRELGTLDIPLYIETQERRRNIPERIGELCEQWGASHLFANIEYEVDELRREAKLVRLL 219

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---------DLRSL 177
             + I  ++  DS ++ PG++ +   + Y VY+P+ +A +  L Q               
Sbjct: 220 ADKGIAFETAHDSCVVTPGALQSQQGKQYAVYSPWYRAWMGYLHQHGDHNLRVLEPPGKN 279

Query: 178 PVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
              A    G +  S IP      R  D   Q  + M+P GEQ A   L +F   +V  Y 
Sbjct: 280 HESARSHFGDLFDSQIPGASENRRLSDEEKQRFEKMYPEGEQEARKRLDEFITTRVKEYS 339

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           ++R +   Q T+ LSPYL+ GVLS R   ++ K+     L    +   SW++E+ WR+FY
Sbjct: 340 KKRSMVDGQYTAILSPYLASGVLSARTAVSKAKDANGGYLDGKNASLASWISEVAWRDFY 399

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P +CM K F P    + W  D+ L   W +G TG+PI+DAAMRQL    W+HN
Sbjct: 400 KHVLVHWPFICMNKCFKPEFTNVTWEYDTDLFTRWTEGQTGYPIVDAAMRQLRHDAWLHN 459

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI +SFL KDL++DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP
Sbjct: 460 RNRMIVSSFLSKDLMIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNP 519

Query: 412 TIQGKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSL-NYPLPIVDHKKACHH 469
            +Q ++FDP G FIR W+PEL+++  ++ IH P+            YP PIV+H  +   
Sbjct: 520 LLQSEKFDPNGDFIRKWVPELSDIKDSKAIHDPYGRGAGAIAQKAGYPRPIVEHAASRVR 579

Query: 470 TLNQYYA 476
            L +Y  
Sbjct: 580 ALKRYKE 586


>gi|326315673|ref|YP_004233345.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323372509|gb|ADX44778.1| Deoxyribodipyrimidine photo-lyase [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 495

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 178/498 (35%), Positives = 251/498 (50%), Gaps = 23/498 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M      S  LVW R DLR  D+ ALY A      +V  VF+   +       + R+  F
Sbjct: 1   MIMVPTFSKGLVWFRRDLRSDDHAALYHALRQC-GQVHCVFVFDTDILDPLPRADRRVEF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           I  SL+Q+  SL                 + E + +  ++  V  LF N   E   + RD
Sbjct: 60  IRESLVQLDASLRDLSGHRHGGLIVRHGVAAEEVPALAVRLGVQALFANHDDEPAALERD 119

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +  RL    +   ++ D  +     +L      Y V+TP++ A ++ +    L + PV
Sbjct: 120 DRVRHRLGAGGVQMLTYKDHTVFERAEVLTQGGTPYTVFTPYKNAWLRKVDAFYLSAYPV 179

Query: 180 PAIRLTGPVTPS----NIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVE 232
                     P     ++P   D  F+         P G + A  +L  F + ++  Y E
Sbjct: 180 ERHAGRLAPRPEGARGSVPALADIGFEPAGLDRLPLPPGMEGARTLLDDFLQ-RIDQYGE 238

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD PA++G S LS +L  G LSPR+      E          +GA +WL+ELIWR+FY 
Sbjct: 239 ARDFPAVKGPSYLSVHLRFGTLSPRRAARAAHERMRQ----GSTGAATWLSELIWRDFYF 294

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            ++A +P V  G  F P  + I W           AW +G TG+P++DAAM Q+N  G+M
Sbjct: 295 QVLAHHPQVAGGASFKPAYDAIPWEDGPQAQERFAAWCEGRTGYPLVDAAMAQINQTGYM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRM+ ASFLVKDL VDWR GE YF  +L D DL++NNGGWQWA+S+G D+ PYFRIF
Sbjct: 355 HNRLRMVVASFLVKDLGVDWRRGERYFAEKLNDFDLSANNGGWQWASSSGCDAQPYFRIF 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           NP  Q ++FDP+G FIR +LP+L  +P +++HAP              L  NYP PIVDH
Sbjct: 415 NPVSQSRKFDPKGRFIRLYLPQLAALPDRWLHAPWEAGPLELEAAGVRLGDNYPHPIVDH 474

Query: 464 KKACHHTLNQYYAAKKQS 481
            +A   TL +Y   K ++
Sbjct: 475 DEARQKTLARYAVVKSEA 492


>gi|332711249|ref|ZP_08431182.1| deoxyribodipyrimidine photo-lyase type I [Lyngbya majuscula 3L]
 gi|332350063|gb|EGJ29670.1| deoxyribodipyrimidine photo-lyase type I [Lyngbya majuscula 3L]
          Length = 474

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 167/477 (35%), Positives = 240/477 (50%), Gaps = 17/477 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S  K++ VF   P    +  I+  +  ++   L Q+Q+
Sbjct: 6   LFWHRRDLRISDNVGLAAAFELS-PKLVGVFCLDPTILERDDIAPARVTYMIGCLEQLQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G               + + +         + +N   E     RD+ +   L+ +
Sbjct: 65  GYRQAGSQLLILHQDPR----QGIPNLAAALEAKAVCWNWDVEPYSKERDQDVAAGLKEK 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------RSLPVPAIR 183
            I   ++ D +L  PG I   +   Y VYTPF K          +       SL      
Sbjct: 121 GIAVYNYWDQLLHAPGEIFTKSGNPYSVYTPFWKNWQGQSKAEPVATLTRVESLTEIEQD 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                  +++P   D  +   + +  P GE+ A  IL +FC   +  Y EQR+ P + GT
Sbjct: 181 NALAAGVTDLPSAIDLGYVWENELLVPPGEKVAQEILEEFCDRTIGDYHEQRNFPGVDGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           S+LS  L  GV+  R+ W   +  +      + +    +W  EL WREFY+H M F+P +
Sbjct: 241 SKLSAALKFGVIGIRRVWQAAQNAYNLSRSDEARQSIQTWQQELAWREFYQHAMYFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+    +   W+ +    QAW +G TG+PI+DAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 AQG-PYRQKFQDFPWDNNPEFFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D  P  RIFNP  Q K+FDP 
Sbjct: 360 TKDLIINWQWGEKYFMQRLSDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDPD 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           G +IR WLPEL++V T+Y+ +     +       YP PIVDH +        Y   +
Sbjct: 419 GEYIREWLPELSSVDTEYVVS-GKIPESGREMCGYPAPIVDHNQQQRRFKELYKELQ 474


>gi|294649780|ref|ZP_06727183.1| deoxyribodipyrimidine photo-lyase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824331|gb|EFF83131.1| deoxyribodipyrimidine photo-lyase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 476

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 188/477 (39%), Positives = 269/477 (56%), Gaps = 16/477 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A        +A+ I +PEQW+ H  +  +  F    L Q+Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHATQTGRT--VALVILSPEQWQLHDDAPIKIDFYLRQLQQLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            +L    I         + D  +          + +++ N +  +NE++RD  ++K L Q
Sbjct: 64  IALQSLNIPLIVQHLPLWKDITQLFADLMQNIPIQQVYANIELGVNELKRDNEVQKLLNQ 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                  F D  L P  SI N + Q Y+V++ F+K   Q L Q+  +  PVP ++   P+
Sbjct: 124 QNKELVLFHDRTLFPVASIRNQSHQPYQVFSAFKKVCYQRLQQSLPQCYPVPDVQQ--PI 181

Query: 189 TPSNIPRFFDYP---------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                P   D+             +   +P+ E  AL +L +F  +++  Y   RD PA 
Sbjct: 182 NIDPYPSLEDFKELQLKYTQQLNHLTQQWPVSESFALTLLDQFIHDRLDDYKNARDFPAQ 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTSQ+S YL+IG+LS RQC   L  +     +    G  +WL+EL+WREFY+H++  YP
Sbjct: 242 AGTSQVSAYLNIGILSIRQCLQALFHKQHGDFLIESEGQQTWLDELLWREFYQHILFDYP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V    PF   T+KI W  D   LQ W+QG+TG PI+DA MRQL   GWMHNR+RMI A 
Sbjct: 302 RVSKHLPFQLSTQKIHWRDDPVALQQWQQGHTGIPIVDAGMRQLLATGWMHNRVRMICAM 361

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+ PYFRIFNP  Q ++FD
Sbjct: 362 FLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAAPYFRIFNPISQSQKFD 421

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           P G ++R W+PEL ++  + IH P+++  K + SLNYP+PIVD K +    +  +  
Sbjct: 422 PNGDYLRQWIPELAHLDAKSIHEPYAY--KMNSSLNYPIPIVDLKSSRARAIAAFKE 476


>gi|228921829|ref|ZP_04085144.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837834|gb|EEM83160.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 476

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 254/480 (52%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ ++I          I +    +++ +++ ++K
Sbjct: 6   IVMFQKDFRLYDNPALFEAVQSGE--VLPIYIQD----ETFSIGSAAKWWLHHAIIDIKK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G      + +      E + S   Q  +T +++N  Y+ + ++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGNT----QEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGP 187
            +ICK F+  +LL P  I       YKV+TPF  A  + ++      +        L   
Sbjct: 116 GIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPTSKVQSIKWGSSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +      P+ + ++ ++   E+ A  + +KF   K+ +Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKKFFSSKLAFYSEGRDFPNQNAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +  +  ++ L  +  +      +    S++ +LIWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQIPVKLMYHYLINKSTERQCSLFEKQVISFIRQLIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL+ W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LLD D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P       L K ++ L   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
           IMS101]
 gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
           IMS101]
          Length = 474

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/476 (34%), Positives = 239/476 (50%), Gaps = 16/476 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L  A       V+ +F       ++  I++ +  ++   L  +QK
Sbjct: 6   LFWHRRDLRISDNVGLTQASQEGQT-VVGIFCLDENILKRDDIASARVTYMIGCLQHLQK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
              Q G              IE +           +++N   E    +RD+ +++ L+  
Sbjct: 65  RYKQIGSQLLIMSGKP----IEAIPKLATFLEAKAVYWNLDVEPYSRKRDRQVKENLEAA 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIRL 184
            +  K+F + +L  P  I     + Y VYTPF K          L     + L    ++ 
Sbjct: 121 NIQVKTFWEQLLHSPEEIFTSTKKPYSVYTPFWKNWQGKKKSNPLNTPVLKGLTEDQLQY 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           T  +   ++P      F   + +    GE  AL  L KF    +  Y EQR+ P++ GTS
Sbjct: 181 TKKIGVIDLPTAKQLGFNWDNKLILEPGETAALEKLEKFSNGAISSYQEQRNFPSLDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVC 302
           QLS  L  G +  R  W + +E   +           +W  E+ WREFY+++M  YP + 
Sbjct: 241 QLSVALKFGTIGIRTVWAKTQELIENCYSSEVFENIETWQKEIAWREFYQYVMYHYPELE 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G P+    +   W  +    QAW +G TG+PI+DAAMRQLN  GWMHNR RMI ASFL 
Sbjct: 301 TG-PYREHWKNFPWKNNKAHFQAWCEGNTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT 359

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL+++W+ GE+YFM  L+DGDL +NNGGWQW+AS+G D  P  RIFNP  Q +++DP+G
Sbjct: 360 KDLIINWQWGEKYFMQNLIDGDLCANNGGWQWSASSGMDPKP-LRIFNPVSQTQKYDPEG 418

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +IR W+ EL +V TQY+        +   ++ YPLPIVDHKK      + Y   K
Sbjct: 419 EYIRQWVCELRSVDTQYLVT-GKIPAEEREAIGYPLPIVDHKKQQQLFKDLYREQK 473


>gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614]
 gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614]
          Length = 478

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 168/488 (34%), Positives = 247/488 (50%), Gaps = 30/488 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ--WRQHGISARQSHFIYASLL 66
             LVW R DLRI DN AL+ A  +   +V+ VFI  P       H +      +++ SL 
Sbjct: 2   TTLVWFRQDLRIKDNPALFEAAKSG--RVLPVFILEPADKTGETHPLGGASRWWLHHSLK 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ L   G+V          D+   +     +  V  +F+NR YE   + RD  L+  
Sbjct: 60  ALQQDLP--GLVLL------KGDARHLIPEVAKRAGVEAVFWNRCYEPYAIERDTDLKSS 111

Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+      KSF  S+L  P  I   +   YKVY+PF KA  Q  +     +LP P     
Sbjct: 112 LKDDGYEVKSFKASLLYEPWEIETQSGGPYKVYSPFWKAARQIEIDD---ALPAPEKLDI 168

Query: 186 GPVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                      FD         +  + ++  GE  A   L  F +E +  Y + R+ P +
Sbjct: 169 ADYDGGEELESFDLLPKKPNWAKGWEDLWTPGEAGASERLGSFLEEGLKGYGKLRNRPDL 228

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              S+LSP+L  G +SPRQ W+  ++   D           +L+E+ WREF  +L+  +P
Sbjct: 229 PNVSRLSPHLHFGEISPRQIWHATQDVM-DRRSSLGDDGMKFLSEIAWREFSHNLLYHFP 287

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   + +    ++  W +    L+ W++G TG+PI+DA MR+L   G+MHNR+RMI AS
Sbjct: 288 KLP-SENWRSTFDEYPWKEPDGELEKWQKGQTGYPIVDAGMRELWQTGYMHNRVRMIAAS 346

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL+K L + WR GE +F   L+D DLA+N+ GWQW A +G D+ PYFR+FNP  QG++FD
Sbjct: 347 FLIKHLRLHWRHGEAWFRDTLVDADLANNSAGWQWVAGSGADAAPYFRVFNPITQGEKFD 406

Query: 420 PQGTFIRHWLPELNNVPTQYI----HAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQ 473
           P G +IR W+PEL  + T+Y+     AP   L K  ++L   YP P+VDH  A    L  
Sbjct: 407 PDGNYIRQWVPELRELDTRYLFAPFDAPAEALKKARITLGDTYPKPLVDHASAREAALEG 466

Query: 474 YYAAKKQS 481
           Y A K+  
Sbjct: 467 YEAVKQAG 474


>gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652]
 gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652]
          Length = 482

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 175/490 (35%), Positives = 256/490 (52%), Gaps = 20/490 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    ++W R DLR+ DNKAL AA H S   +I+++I  PE      + A QS +++
Sbjct: 2   ANDAAKPLILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQSWWLH 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL ++                  L S   Q     +F+NR+Y+   +  D  
Sbjct: 61  HSLEALDGSLRKRRGGLLLASGEALG----VLRSLIRQSDADAVFWNRRYDPPGISIDAH 116

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL--RSLPV 179
           +E  L +  +  KSF   +L  P  ++  +   Y+VYTPF +AL +++    L   S   
Sbjct: 117 IEHELEKQAIEVKSFGGQLLHEPSQLMTGSGTPYRVYTPFWRALERSIEPEPLDIPSKLQ 176

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            A +L G     +       P  A +   ++  GE+ A   LR F ++++  Y E RD P
Sbjct: 177 LASKLPGSEKLESWKLLSTQPDWASNFADLWTPGEEGAQEKLRTFIEDRLDGYKENRDYP 236

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A   TS LSP+L++G +SP + W+  +     L   P +    +  E+ WR+F  HL+A 
Sbjct: 237 AKPATSMLSPHLALGEISPARIWDATRGLSKHL---PAADIVHFRKEIAWRDFSYHLLAH 293

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +     +    ++ EW        AW +G TG+PI+DA MRQL   GWMHNR+RMI 
Sbjct: 294 FPRLATAN-WDDRFDRFEWGSAEEDFNAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIA 352

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL+KDL+VDWR GE +F   L+D D A+N   WQW A +G D+ P+FR+FNP +QG++
Sbjct: 353 ASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRVFNPVLQGEK 412

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHKKACHHTL 471
           FDP G F+R  +PEL  +  +YIH    AP S LD  D  L   YP P+VDH  A    L
Sbjct: 413 FDPDGDFVRSHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGARKRAL 472

Query: 472 NQYYAAKKQS 481
             Y A +  +
Sbjct: 473 AAYNAIRGAA 482


>gi|16799672|ref|NP_469940.1| hypothetical protein lin0597 [Listeria innocua Clip11262]
 gi|16413037|emb|CAC95829.1| lin0597 [Listeria innocua Clip11262]
          Length = 467

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 179/481 (37%), Positives = 253/481 (52%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  +I +F   PEQ+ +    +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEED--LILLFQVNPEQFIK---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           Q+ L++       H    F + IE L     +     K+F+NR        RD+      
Sbjct: 57  QQELNKN-----THLQIMFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAARAFF 111

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + +   S+ DS L     +   A + YK++TP+ K   + + +  L+    P      
Sbjct: 112 ADKEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPEKIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P+   +F +       P F  GE+ A   L  F KE +  Y + RD+PA+  TS LS
Sbjct: 172 SLFPNYEEQFRELIQDL--PAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L++E      +   G  ++  EL WR+FY  +   +P     +P
Sbjct: 230 RYLRTGEISIRTVWQALQKE------EATEGRATFEKELCWRDFYNMIYVSFPKQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    + W+ G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL ++P ++IH P    +         L  +YPLPI+DHK+     + +Y  +K+ 
Sbjct: 403 KYVKELRDLPDKFIHQPEKMSETEQKEHGLILGKDYPLPIIDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|295700812|ref|YP_003608705.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
 gi|295440025|gb|ADG19194.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. CCGE1002]
          Length = 499

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 183/493 (37%), Positives = 251/493 (50%), Gaps = 37/493 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQS 58
            LVW R DLR TD+ ALY A  + + +V  VF+            W+          R+ 
Sbjct: 14  GLVWFRRDLRNTDHAALYYALEHCE-RVWCVFVFDTTILQPIVDAWQTRHPGEPVKDRRI 72

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            FI ASL ++  +L   G          + D  E +     + RV  +F N  YE   + 
Sbjct: 73  DFILASLAELDDALRANGGGLVVL----YGDPAELVPKLAAELRVDAVFANHDYEPVAIE 128

Query: 119 RDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD  + +RL  +     +F D  +     +LN   + + V+TP++ A ++ L   DL+  
Sbjct: 129 RDATVGERLAEKGRQWLTFKDQTIFERDELLNGQDKPFAVFTPYKNAWLKQLSAFDLKPY 188

Query: 178 PVPA-IRLTGPVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           PV    +    + P    R          P    D   P G   A  +L  F   ++  Y
Sbjct: 189 PVETYAKHLAALPPKLDRRLPTLDQLCFAPSNLTDLPLPAGMSGAQQLLDDFLT-RIDSY 247

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            E+RD PA +G S LS +L  G +S R      +  +   L     GA +WL+ELIWR+F
Sbjct: 248 AERRDFPAAKGPSYLSVHLRFGTVSIRTL---ARLAYEMSLQPDGKGAATWLSELIWRDF 304

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           Y  ++A +P +  G PF P  E + W K         AW  G TG+P++DAAM QLN  G
Sbjct: 305 YFMVLAHHPRIAKGAPFKPEYEHLRWEKGPSADAAFAAWCDGRTGYPLVDAAMLQLNHTG 364

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+TASFL KDL VDWR+GE YF   L D D ++NNGGWQWAASTG D+ PYFR
Sbjct: 365 YMHNRLRMVTASFLAKDLGVDWRLGERYFADLLNDFDFSANNGGWQWAASTGCDAQPYFR 424

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461
           IFNP  Q ++FDP G FI+ +LP+L  +P ++IHAP     +        L  NYP PIV
Sbjct: 425 IFNPVTQSEKFDPDGRFIKRYLPQLAQLPAKWIHAPWLAGAERLAEYGVVLGGNYPEPIV 484

Query: 462 DHKKACHHTLNQY 474
           DH +A   TL +Y
Sbjct: 485 DHAQARERTLIRY 497


>gi|114707205|ref|ZP_01440103.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
 gi|114537401|gb|EAU40527.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
          Length = 492

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 155/488 (31%), Positives = 239/488 (48%), Gaps = 18/488 (3%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A       +VWLR+DLR+ DN AL  A    +  ++ + +   E      +      ++
Sbjct: 11  TADQETGPIVVWLRDDLRLDDNPALALAAET-NRPIVPLVVLDEESDGVRALGGAHKWWL 69

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL     SL  KG      +    D  ++ ++    +   + LF+NR+Y+      D 
Sbjct: 70  HHSLESFASSLRGKGSRLTLRRGKAKDQVLDVIE----KTGASALFFNRRYDQASRAVDD 125

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL---- 177
            + + L  +V  + F  ++L  P ++   +   YKV+TPF + + ++  +  +       
Sbjct: 126 AIGEALGDQVSVERFTANLLHDPENVETTSGGYYKVFTPFWRKVSESGPRDPIDPPDGLK 185

Query: 178 -PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            P    +         +P   D+    I   +  GE+ A      FC + +  Y + R+ 
Sbjct: 186 QPDTFPQSDDLEDWELLPTKPDWS-GGIADFWTPGEKAAHDRFETFCDDLLSDYHKGRER 244

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P    TS++SPYL  G +SP + W+  +         P     ++L EL+WR+F  HL+ 
Sbjct: 245 PYADDTSRMSPYLRWGEISPYRLWHTAQAYANRRKTVPDEAIRTFLQELVWRDFNYHLLF 304

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +  +   K F    +   W      L+AW+ G TG+PI+DA MRQL   GWMHNR+RMI
Sbjct: 305 HFGPLA-DKNFNDRFDNFSWRSSKKDLKAWQNGLTGYPIVDAGMRQLWKTGWMHNRVRMI 363

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SFL KDLL+DWR GE +F   L+DGD+ASN   WQW    G D+ P+FRIFNP  Q +
Sbjct: 364 VGSFLTKDLLIDWRDGERWFWDTLVDGDIASNTAQWQWIGGAGADAQPFFRIFNPITQSE 423

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHT 470
           RFD  G +IR ++PEL  +P ++IHAP       L+K  + L   YP P+VDH +A    
Sbjct: 424 RFDKNGAYIRQFVPELKEMPDKHIHAPWKADKDVLEKAGVKLGETYPEPLVDHSEARDRA 483

Query: 471 LNQYYAAK 478
           L+ Y   K
Sbjct: 484 LSAYDEVK 491


>gi|149926765|ref|ZP_01915025.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
 gi|149824694|gb|EDM83910.1| Deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
          Length = 500

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 173/487 (35%), Positives = 243/487 (49%), Gaps = 24/487 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
           S  L+W R DLR  DN AL+ A  + + +V  VF+            + R+  FI+ S +
Sbjct: 21  SKGLMWFRRDLRTHDNAALFYALKHCE-QVHCVFVYDKTILDALPNKADRRVEFIWESCM 79

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L   G          +D +   +     +  V  +F N+ YE   + RD  + K 
Sbjct: 80  ALKTKLQGFGGDLHLM----YDHAETAIPDLATKLGVQAVFTNKDYEPAAIHRDITVGKT 135

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRL 184
           LQ + I    F D  +     +L  A + + V+TPF+ A ++ L    L   P  A +  
Sbjct: 136 LQGKGIELFRFKDQAIFEEDEVLTQAGKFFSVFTPFKNACLKKLDAFHLTPYPSEARVGS 195

Query: 185 TGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               +    P      F+  +   M   GE+ AL     F   ++  Y   RD PAI+G 
Sbjct: 196 LAKDSNLTAPSLDHMGFKRTNLLDMIKPGEEGALDAFEDFL-NRMDKYKVARDFPAIKGV 254

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS +   G +S R+      + F         GA  WLNELIWR+FY  ++   P   
Sbjct: 255 SYLSVHNRFGTISIRRLAKAAYDRFK---FDGSEGAMGWLNELIWRDFYFQIIYHRPDAA 311

Query: 303 MGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
             K F P  ++I+W+ D     L +AW +G TG+P++DAA RQLN  G+ HNRLRM+TAS
Sbjct: 312 E-KAFKPEYDQIQWDADEKAQRLFKAWCEGKTGYPLVDAAQRQLNQTGFQHNRLRMVTAS 370

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDL +DWR GE+YF   L D DL++NNGGWQWAAS+G D+ PYFRIFNP  Q ++FD
Sbjct: 371 FLTKDLGLDWRWGEKYFAEHLNDFDLSANNGGWQWAASSGCDAQPYFRIFNPYSQSEKFD 430

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
             G FIR + PEL  +  +YIH P         +    L   YP P+V+H  A   TL +
Sbjct: 431 ADGKFIRKYCPELAKLSNKYIHNPAECPPFELQMAGVVLGETYPRPVVEHDVARKKTLER 490

Query: 474 YYAAKKQ 480
           Y   KK 
Sbjct: 491 YSVVKKA 497


>gi|115396894|ref|XP_001214086.1| deoxyribodipyrimidine photo-lyase [Aspergillus terreus NIH2624]
 gi|114193655|gb|EAU35355.1| deoxyribodipyrimidine photo-lyase [Aspergillus terreus NIH2624]
          Length = 583

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 178/498 (35%), Positives = 263/498 (52%), Gaps = 21/498 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSH 59
           A    +  + W ++DLR+ DN+AL+ A       +  +I ++I +PE    H  S  +  
Sbjct: 86  AVRPNAAVVHWFKSDLRLHDNRALHKAAQVAREHNLPLIGLYILSPEDLTAHLSSPARVD 145

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
               +L Q+Q+ L++  I                +   C +     LF N +YE++E+RR
Sbjct: 146 LTLRTLAQLQRDLNESDIPLYMETQERRQAIPARIVELCQKWGANHLFANLEYEVDELRR 205

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------ 172
           +  L +      I   +  D+ ++PPGS+ +   + Y VY+P+ +A +  L +       
Sbjct: 206 EARLIRLCAKNGIRFDALHDTCVVPPGSLSSQQGKQYAVYSPWYRAWVAFLKENPDYLEV 265

Query: 173 ---------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                    D R           P  P+N  +  D   + +  ++P GE  ALH L  F 
Sbjct: 266 SEEPGANSGDARKHFAELFDSEVPQAPAN-KQLSDSQKEHLSALYPAGEHEALHRLETFL 324

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           KEK   Y E R+I A Q TS LSPY + G LS R    + +    +LL + + G  SW++
Sbjct: 325 KEKAVEYDEDRNILAGQHTSVLSPYFASGSLSARTAVVQARRANKNLLDRNEPGYMSWIS 384

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           E+ WR+FY+H++  +P +CM K F P    +EW  D    QAW +G TG P++DAAMRQL
Sbjct: 385 EVAWRDFYKHVLVQWPFICMNKCFKPEFTDLEWEYDEIKFQAWCEGRTGVPVVDAAMRQL 444

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           N   WMHNR RMI +S+L KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  
Sbjct: 445 NHDAWMHNRARMIVSSYLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQ 504

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL-NYPLPIVD 462
           PYFRIFNP  Q +RFD +G +IRHW+PEL  +    IH P+     +      YP  +VD
Sbjct: 505 PYFRIFNPLRQSERFDAEGEYIRHWVPELQGIEGAAIHDPYGRGAGDQAGRQGYPHALVD 564

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H ++ +  L +Y  A ++
Sbjct: 565 HSQSRNRALERYKRASQK 582


>gi|119477185|ref|ZP_01617421.1| putative photolyase [marine gamma proteobacterium HTCC2143]
 gi|119449548|gb|EAW30786.1| putative photolyase [marine gamma proteobacterium HTCC2143]
          Length = 477

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 156/482 (32%), Positives = 242/482 (50%), Gaps = 25/482 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ DN AL AAC   +  +I V+I   +   Q  +      +++ +L  +  S
Sbjct: 1   MWFRQDLRLADNPALCAACERGE--IIPVYILDDQGAGQWKMGGASRWWLHFALADLNAS 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L Q   ++Q        D++  L     Q     + +NR YE   + RD  ++  L+   
Sbjct: 59  LKQCLQIYQ-------GDALTILGDLADQTGAATVVWNRCYEPWRIGRDATIKTSLKESG 111

Query: 132 I-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLTGPVT 189
           +  +SF+ S+L  P  +L      YKV+TP+ R+  +  +        P           
Sbjct: 112 LDVQSFNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLSTVAPRRPMDPPKTLKVFVDSGD 171

Query: 190 PSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              +      P     +++   + I E  A   L +F   ++  Y E R+ PA Q  S+L
Sbjct: 172 SLELDNLNLLPKIAWDESMKACWDISEAAAHARLDEFVMNELQDYREGRNFPAKQNVSRL 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G +SP   W R  E      I  +    ++++EL WREF  +L+  +P +    
Sbjct: 232 SPYLHFGQISPNSAWYRAAE--AGAFINNEQSLDTFMSELGWREFSYYLLYHWPKLPTEN 289

Query: 306 PFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                 +   W  +    L AW+QG TG+P++DA MR+L + G+MHNR+RM+  SFLVK+
Sbjct: 290 -LQTRFDLFPWANNTDEDLSAWQQGKTGYPLVDAGMRELYSTGYMHNRVRMVVGSFLVKN 348

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W  GEE+F   L+D DLASN+  WQW A  G D+ P+FRIFNP  Q ++FD QG++
Sbjct: 349 LLIHWHRGEEWFWDCLVDADLASNSASWQWIAGCGADAAPFFRIFNPITQSEKFDKQGSY 408

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR ++PEL ++P +YIHAP     +       ++ +NYP P+VD K +    L  +   K
Sbjct: 409 IRRYVPELKDMPEKYIHAPWLAPAEVLAVAGVNIGINYPEPVVDIKVSRARALEAFAVTK 468

Query: 479 KQ 480
            Q
Sbjct: 469 IQ 470


>gi|238028072|ref|YP_002912303.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
 gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
          Length = 489

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 154/495 (31%), Positives = 241/495 (48%), Gaps = 24/495 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A +     LVW R+DLR+TDN AL  A   S   ++ V++   +  R  G + R   +
Sbjct: 3   LSADSQAQPALVWFRDDLRVTDNPALARAAE-SGRPLVCVYVFERDGTRPLGGAVR--WW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L  +   L+ +G      +        E + +   +     +++NR+Y+      D
Sbjct: 60  LDGALRSLDAKLAAQGGGLVVLEGDER----ETIAALAGELGAGAVYWNRRYDGLARETD 115

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFR---------KALIQNLV 170
             L++ L+   I  +SF+ ++L  P  I   +   ++V+T +           A +    
Sbjct: 116 AALKRSLKEAGIEVESFNGALLHEPWEIRTGSGGAFQVFTAYWRAARAAGELPAPLAEPA 175

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           +     LP    R    +    +          +   +   E+  L  L  F  +++  Y
Sbjct: 176 KWRFHRLPEALARRATRIDALGLLPVRPDWAGGLREAWEPSEEGGLARLEAFLDKQIRGY 235

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD P    TS+LSPYL  G LS RQ W+  +    +      +    +L+EL WREF
Sbjct: 236 GDARDRPDRPATSRLSPYLRFGQLSARQVWHAAQAAGREGGAAVAADIEKFLSELGWREF 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P + M + +    + + W  D     AW +G TG+P++DA MR+L   GWMH
Sbjct: 296 NTSLLYHFPELPM-RNYRDRFDAMPWRSDEAAFAAWCRGRTGYPLVDAGMRELWATGWMH 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+TASFL+K LL+DWR GE +F   L+D D+A+N+  WQW A +G D+ PYFRIFN
Sbjct: 355 NRVRMVTASFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGSGADAAPYFRIFN 414

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKND--LSLNYPLPIVDHK 464
           P +QG++FDP G ++R W+PEL  +P   IH P       L+     L   YP PIVDH 
Sbjct: 415 PVMQGRKFDPDGAYVRRWVPELAGLPADAIHEPWRAKPVVLEAAGVVLGRTYPAPIVDHD 474

Query: 465 KACHHTLNQYYAAKK 479
            A    L    A K+
Sbjct: 475 AARKRALGALEATKR 489


>gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
 gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
 gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
 gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
          Length = 472

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 180/478 (37%), Positives = 265/478 (55%), Gaps = 24/478 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W R DLR++DN AL  A  ++D  +I ++I   +      +   Q  +++ SL  +
Sbjct: 2   TTIFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLGDAQRWWLHHSLSSL 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q +LS+KG      +     D+   L     + +V K+++NR YE      D  LE RL 
Sbjct: 58  QTALSKKGTSLILKKG----DTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLP 113

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIR 183
             +  + +  ++L  P  I N +   YK++TPF K +  +L      + P       AI+
Sbjct: 114 P-LSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRAIK 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                T + +P+  D+  Q  D  +  GE+NA  +L+KF KE +  Y   RD P I  TS
Sbjct: 173 SDNLETWNLLPKHPDWS-QGFDQ-WKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL  G +S RQ W  + +  +      +  A  +L +LIWREF  +L+  +P +  
Sbjct: 231 HLSPYLHFGEISIRQVWTAITQATIQ-DKNLQKAADVFLRQLIWREFAYYLLWHFPQMGR 289

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    +  +W K+ + L+AW++G TG+PI+DA MR+L   G+MHNR+RMI ASFLVK
Sbjct: 290 SN-FRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL++DWR GE++F + LLD DLA+N  GWQW A  G D+ PYFRIFNP +Q K+FDP GT
Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +I+ W+PEL  VP++YIH P    D      K +L ++YP PIV+H KA    L  Y 
Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKAYK 466


>gi|187921432|ref|YP_001890464.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
 gi|187719870|gb|ACD21093.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phytofirmans PsJN]
          Length = 499

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 172/499 (34%), Positives = 252/499 (50%), Gaps = 37/499 (7%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGIS-- 54
             +    LVW R DLR TDN ALY A  + + +V  VF+          E W+       
Sbjct: 8   NDSFDTGLVWFRRDLRSTDNAALYYALKHCE-RVWCVFVFDTTILQPLVEAWQARHPDTQ 66

Query: 55  --ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
              R+   I  +L ++ ++L   G          + D  + +     +  V  +F N  Y
Sbjct: 67  PQDRRIELILGALGELDEALRANGGGLIVL----YGDPADLVPKLADELGVDAVFANHDY 122

Query: 113 EINEVRRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           E   + RD+ + + L        +F D V+     +L    + + V+TP++ A ++ L  
Sbjct: 123 EPVAIARDETVRETLAEAGRQWLTFKDQVIFERDEVLTGQNKPFTVFTPYKNAWLKQLTA 182

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPR----FFDYPFQAIDPM---FPIGEQNALHILRKFCK 224
            DL+  PV +        PS + R         F   +      P G   A  +L  F  
Sbjct: 183 FDLKPYPVESYTKHLAAPPSKLDRRLPTLDQLGFAPSNLAELDLPAGMSGAQRLLDDF-A 241

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            ++  Y ++RD PA +G S LS +L  G +S R       E  +        G+ +WL+E
Sbjct: 242 TRIDSYKDRRDFPAAKGPSYLSIHLRFGTVSIRTLARLAHEMSLQ---PDGEGSTTWLSE 298

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMR 341
           LIWR+FY  ++A +P +  G  F    +++ W +         AW  G TG+P++DAAM 
Sbjct: 299 LIWRDFYFMILAHHPRLANGASFKEEYDQLRWEQGPEADEAFAAWCDGRTGYPLVDAAML 358

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           QLN  G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D ++NNGGWQWAASTG D
Sbjct: 359 QLNRTGYMHNRLRMVTASFLVKDLGVDWRLGERYFAQQLNDFDFSANNGGWQWAASTGCD 418

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLN 455
           + PYFRIFNP  Q ++FD +G FI+ +LP+L  +P+++IHAP     +        L  +
Sbjct: 419 AQPYFRIFNPITQSEKFDAEGRFIKRYLPQLARLPSKWIHAPWLAGTERLAEFGVVLGKD 478

Query: 456 YPLPIVDHKKACHHTLNQY 474
           YP PIVDH +A   TL ++
Sbjct: 479 YPAPIVDHAEARARTLARF 497


>gi|297539339|ref|YP_003675108.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301]
 gi|297258686|gb|ADI30531.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301]
          Length = 479

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 172/478 (35%), Positives = 250/478 (52%), Gaps = 25/478 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLLQV 68
            LVW R DLR  D+ ALY A  +S  KV  VF+       Q    + R+  FI+ S+ ++
Sbjct: 13  SLVWFRRDLRDYDHAALYHALKSSK-KVYCVFVFDTAILNQLNDKADRRVEFIWESVREL 71

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           + SL + G        +  D+    +        V  +F N  YE + + RD  + ++L 
Sbjct: 72  KTSLQKHGSDLIVLHGNAGDE----IPKLANTLLVNAVFTNHDYEPSAITRDAHVAEQLN 127

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PAIRLTG 186
           +  +    + D V+     +LN + + Y V+TP++   ++ +     ++ PV   +    
Sbjct: 128 KSSIAFHHYKDHVIFEKDEVLNLSGKPYCVFTPYKNMWLKTVNDFFFKAYPVDNHLNNLA 187

Query: 187 PVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               S      D  F+  +      P G Q  L +   F  E++  Y + RD PAI+G S
Sbjct: 188 KTNASPFISLEDLGFKHTNLASMRLPTGMQGGLTLFNDFI-ERMSRYKDARDFPAIKGVS 246

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS +L  G +S R           + +    +GA +WL+ELIWR+FY  ++   PSV  
Sbjct: 247 YLSVHLRFGTISIRHL-------AREAMQSANTGAQTWLSELIWRDFYVQILHHNPSVAA 299

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G+ +    E +++  D+ L QAW  G TG+P++DAAMRQLNT G+MHNRLRM+ ASFLVK
Sbjct: 300 GRAYKVEFESLKFPNDTALFQAWCDGKTGYPLVDAAMRQLNTTGFMHNRLRMVAASFLVK 359

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YF  +L+D DL++NNGGWQWAASTG D+ P+FRIFNP  Q +RFD QG 
Sbjct: 360 DLLIDWRWGERYFAEKLIDFDLSANNGGWQWAASTGCDAQPWFRIFNPITQSERFDAQGK 419

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYY 475
           FIR ++PEL     + IHAP              +  +Y  P+VDH       L  Y 
Sbjct: 420 FIRKYVPELTKCNDKEIHAPWLIPLLRLQELNLSIGKDYAAPVVDHATQRLQALALYK 477


>gi|145258924|ref|XP_001402217.1| deoxyribodipyrimidine photo-lyase [Aspergillus niger CBS 513.88]
 gi|134074832|emb|CAK38946.1| unnamed protein product [Aspergillus niger]
          Length = 584

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 168/487 (34%), Positives = 256/487 (52%), Gaps = 21/487 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN+ L  A          ++ ++I +PE    H  SA +   +  +L  
Sbjct: 95  VHWFKTDLRLHDNRGLQMAYQVAREHKLPLVGLYILSPEDLTAHLSSAPRVDLMLRTLEL 154

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ LS+  I          +D  + +   C +   T LF N +YE++E+RR+  L +  
Sbjct: 155 LRRDLSELDIPLYMETQEKRNDIPQRIIDLCQEWGATHLFANLEYEVDELRREAKLVRLC 214

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSLP 178
               I  ++  D+ ++ PG +++   + Y VY+P+ +A    L +            S P
Sbjct: 215 ARNGIRFEAAHDTCVVTPGKLVSQQGKQYAVYSPWFRAWCAFLNENPEYLEVADEPGSNP 274

Query: 179 VPAIRLTG-------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
             A +          PV P N  R  +        ++P GE  AL  L  F +EK   Y 
Sbjct: 275 GDARKHFKTLFGCEVPVAPEN-KRLSEEEKTRFRELYPEGEHEALRRLEAFLEEKANDYD 333

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           + R+  A + TS LSPY + G LS R    + +++    L + ++G  SW++E+ WR+FY
Sbjct: 334 DLRNTLAGRNTSVLSPYFASGSLSARTAVFQARKKNKGHLKRNQTGYTSWISEVAWRDFY 393

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H++  +P +CM K F P    + W+ +     AW +G TG+PI+DAAMRQ+    WMHN
Sbjct: 394 KHVLVHWPFICMNKCFKPEFTNLAWSYNKDHFNAWCEGKTGYPIVDAAMRQIKHAAWMHN 453

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RM+ +SFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIFNP
Sbjct: 454 RTRMVVSSFLSKDLLIDWRRGERYFMENLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNP 513

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470
             Q +RFDP+G +IR W+PEL  +    +H P+     +    N YP PIVDH ++    
Sbjct: 514 LRQSERFDPEGEYIRLWVPELRAIEGAAVHDPYGRGAGDIAEKNGYPRPIVDHSESRDRA 573

Query: 471 LNQYYAA 477
           L  Y   
Sbjct: 574 LENYKKV 580


>gi|332093770|gb|EGI98824.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 5216-82]
          Length = 406

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 209/405 (51%), Positives = 279/405 (68%), Gaps = 5/405 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HL W R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I A L 
Sbjct: 1   MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   + +  +F  S+E +   C +  VT LFYN QYE+NE  RD  +E+ 
Sbjct: 61  GLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVDVERA 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  V+C+ FDDSV+LPPG+++    +MYKV+TPF+ A ++ L +     +  P +R +G
Sbjct: 121 LR-NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECVAAPKVRSSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P+      +YP Q+ D   FP+ E+ A+  LR+FC+     Y +QRD PA++GTS+L
Sbjct: 180 SIKPAPSITL-NYPRQSFDTAHFPVEEKAAIAQLRQFCENGAGEYEQQRDFPAVEGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G L PRQC  RL  E    L         WL+ELIWREFYRHLM +YPS+C  +
Sbjct: 239 SASLATGGLLPRQCLYRLLAEQPQALDGGAGSV--WLSELIWREFYRHLMTYYPSLCKHR 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT++++W  +   LQAW++G TG+PI+DAAMRQLN+ GWMHNRLRMITASFLVKDL
Sbjct: 297 PFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           L+DWR GE YFMSQL+DGDLA+NNGGWQWAASTG D+ PYF+  N
Sbjct: 357 LIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFQSDN 401


>gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
           12472]
 gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
           12472]
          Length = 471

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 173/478 (36%), Positives = 244/478 (51%), Gaps = 25/478 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVWLR DLR+ D+ A Y A  +S+A V+ VF+             R+  FI+ S   +
Sbjct: 7   TALVWLRRDLRLDDHAAFYHALKHSEA-VLPVFVFDASILAALPRDDRRVDFIWQSAAAL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L+Q G            +    +     +     +F NR YE     RD  + +RL 
Sbjct: 66  KAELNQLGGDLLIRHGLPQHE----IPRLAAELGAEAVFCNRDYEPAARARDAEVAQRLA 121

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTG 186
            + +  +   D V+     +L  A + + V+TP++ A ++ L    L++ PV   +    
Sbjct: 122 EQGVAFRDSKDQVIFETDEVLTGAGKPFSVFTPYKNAWLKKLTPFHLQAYPVRRYLDALM 181

Query: 187 PVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           P  P ++P   D  F   D        G   A  +   F   ++  Y  QRD P ++G S
Sbjct: 182 PREPQSMPSLADIGFLPSDLASLPVKAGAAGAEALFADF-AGRIERYKAQRDFPGVKGVS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS +L  G LS R+                  GA +WL+ELIWR+FY+ ++   P    
Sbjct: 241 YLSVHLRFGTLSIRRLAAYAWH-------DGGEGAMTWLSELIWRDFYQQVLWHRPDAAK 293

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F P  + + +  D     AW++G TG+P++DAAMRQLN  G+MHNRLRM+ ASFLVK
Sbjct: 294 H-AFKPEYDALPFPNDPEWFDAWREGRTGYPLVDAAMRQLNRSGYMHNRLRMVAASFLVK 352

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE+YF  +LLD DLA+NNGGWQWAASTG D+ PYFRIFNP  Q ++FDP G 
Sbjct: 353 DLLIDWRWGEQYFAEKLLDFDLAANNGGWQWAASTGCDAQPYFRIFNPVSQSEKFDPDGR 412

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYY 475
           FIR ++PEL  +P + IHAP     +        L  +YP PIVDH       L  + 
Sbjct: 413 FIRRYVPELAALPDKLIHAPWQAKPEQLMSAGVRLGRDYPHPIVDHAVQRELALALFK 470


>gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
           DG1235]
 gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
           DG1235]
          Length = 472

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 168/485 (34%), Positives = 241/485 (49%), Gaps = 28/485 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  S  +VW R DLR+ DN AL  A  + +  V+ V++   E        A    +++ S
Sbjct: 2   SDASPVIVWFRRDLRLADNPALSEALASGE-PVLPVYVFDEEGEGDSPDGAASKWWLHHS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + +SL   G      + S    S   L   C +     +F+NR+YE   V RD  ++
Sbjct: 61  LASLDESLKGLGSRLVLLRGS----SKSALVELCREMGARAVFWNRRYEPAVVERDTEIK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           K L    V  +SF+ S++  P S+ N +   +KV+TPF    IQNL      + P     
Sbjct: 117 KSLVDCGVQARSFNGSLMQSPLSVANKSGTPFKVFTPFW-KHIQNLSTRTPLAKPDALTT 175

Query: 184 LTGPVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                   ++  F   P        +  +  GE+ A   L  F K     Y + RD P++
Sbjct: 176 PKSLPKGESLESFELLPRLSWADGFNEEWIPGEKGAEKALSLFAKGGAAKYAKDRDTPSV 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +G S+LSP+L  G +SP Q W+ L  +  +           +L ++ WREF  HL+  + 
Sbjct: 236 RGVSRLSPHLHFGEISPNQIWHALDRKKHE----------PYLRQIAWREFAHHLLFHFK 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P  P      W ++   L+AW+ G TG+PI+DA MR+L   GWMHNR+RMI +S
Sbjct: 286 DTP-SEPLRPEFAAFPWTRNPGWLKAWQTGQTGYPIVDAGMRELWQTGWMHNRVRMIASS 344

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK LL  W+ G  +F   L+D DLA+N  GWQW A  G D+ PYFRIFNP  QG+RFD
Sbjct: 345 FLVKHLLQPWQDGAAWFWDTLVDADLANNTMGWQWVAGCGADAAPYFRIFNPITQGERFD 404

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQ 473
             GT+ R W+PEL  +P +Y+  P             DL  NYP+PIVDH KA    L+ 
Sbjct: 405 GDGTYTRRWMPELARLPNKYLFKPWEAPAALLEKAGVDLGGNYPMPIVDHGKARKAALDA 464

Query: 474 YYAAK 478
           Y   +
Sbjct: 465 YAEMR 469


>gi|313201853|ref|YP_004040511.1| deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
 gi|312441169|gb|ADQ85275.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. MP688]
          Length = 481

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 172/490 (35%), Positives = 255/490 (52%), Gaps = 25/490 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYA 63
           T  S  LVW R DLR  D+ ALY A   +   V   F+   +        + R+  FI+ 
Sbjct: 2   TTSSYALVWFRRDLRDFDHAALYHALK-AHTHVYCAFVFDTDILDALPDRADRRVEFIWE 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           S+ ++Q++L  +G             + E + +  ++ + + ++ NR YE + V RD  +
Sbjct: 61  SVRELQQALRSQGGDLIMLHA----CAKEGIPALAVKLKASAVYSNRDYEPDAVARDAEV 116

Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
             +L  H +    + D V+     +L  A + Y V+TP++ A ++ L    L++ PV   
Sbjct: 117 AAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPYGVFTPYKNAHLKKLNDFYLQAYPVDRY 176

Query: 183 RL-TGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           R        + +P      F   +      P G      +  +F +E++  Y + RD PA
Sbjct: 177 RQHLAAADKTEMPTLESMGFARTNLGEMKLPTGMSGGQQLFAEF-QERMARYKDARDFPA 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R       ++         +GA +WLNELIWR+FY  ++  +
Sbjct: 236 VKGPSYLSVHLRFGTVSIRHLARTAWQQ-------HNAGAETWLNELIWRDFYFQVLHHH 288

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V  G+ F    + I +     L  AW +G TG+P++DAAMRQLN  G+MHNRLRM+TA
Sbjct: 289 PQVAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHNRLRMVTA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDLL+DWR GE YF  +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q ++F
Sbjct: 349 SFLVKDLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           D QG FIR ++PEL     + IHAP              +  +YP P+V+H       L 
Sbjct: 409 DAQGKFIRKYVPELAACHEKEIHAPWLMPPLRQQSLGLVIGKDYPAPVVEHSVQREKALA 468

Query: 473 QYYAAKKQSL 482
            Y  A   +L
Sbjct: 469 LYKNASSTAL 478


>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
 gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
          Length = 466

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 172/482 (35%), Positives = 247/482 (51%), Gaps = 25/482 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L W+R DLR+ D+ AL  A      +VI VFI      ++   ++++  F+++ L 
Sbjct: 1   MTTILWWIRRDLRLHDHPALEYALQKG--RVIPVFILDDRLLQKE--ASKRKQFLFSGLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+ + L ++G      +     + +  L     +    ++     Y     RRD  + + 
Sbjct: 57  QLDEDLRKRGSQLIIRRG----EPLAELTRLIQETGAEEIVALEDYSPYARRRDSHIARE 112

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L        F    + PP  +L      Y V+TPF +A           S  V ++    
Sbjct: 113 LP----LHLFAGETVYPPSLVLKPDGSPYTVFTPFSRAWKAL----PFASPSVVSLPERF 164

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P  P  +      P       FP GE  AL  L  F       Y + R+     GTS LS
Sbjct: 165 PAVPDKLVSLP-IPEAIFLQDFPPGELEALRRLENFLSGPAREYADGRNRLDQPGTSFLS 223

Query: 247 PYLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PY   G+LSPR    ++++   +      K G  +WLNELIWREFY  ++  YP V +  
Sbjct: 224 PYFRFGMLSPRWAVFQVRKMIQITSSPDEKRGYEAWLNELIWREFYISILYHYPHV-LAM 282

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P    IEW      LQAWK+G TG+P++DAAMRQL   GWMHNR RMI ASFL KDL
Sbjct: 283 AFNPALRAIEWRDAPSELQAWKEGKTGYPVVDAAMRQLKATGWMHNRARMIVASFLTKDL 342

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L++W+ GE++FM  L+DGD A+NNGGWQW A  G D+ PYFRIFNP +Q  +FDPQG +I
Sbjct: 343 LINWQEGEQWFMQNLVDGDPAANNGGWQWTAGVGTDAAPYFRIFNPVLQSAKFDPQGRYI 402

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + W+PEL +VPT++IHAP +            +  +YP P+VDH++     L  Y  ++ 
Sbjct: 403 KTWVPELTSVPTEFIHAPWTMPLSLQISLGVRIGRDYPTPMVDHQEVRGRVLEAYRTSQG 462

Query: 480 QS 481
           ++
Sbjct: 463 KT 464


>gi|254497872|ref|ZP_05110637.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
 gi|254352870|gb|EET11640.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
          Length = 477

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 173/480 (36%), Positives = 264/480 (55%), Gaps = 19/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR  DN+AL  AC++    +I ++I     + Q  + A Q  +++ SLL
Sbjct: 1   MSTAIVWFRQDLRCNDNQALAEACNHHQY-IIPLYI-----YSQESLGAAQHWWLHHSLL 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +QK L ++G+      C     ++  +       ++  +++NR YE   ++RDK ++  
Sbjct: 55  ALQKELKKQGLDL----CLKQGQALSIIHELIKNHKIEAVYWNRCYEPKSIQRDKQIKDE 110

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRL 184
           L+   +   SF+ S+L  P ++ N     +KV+TP+ K  I+   Q+ + S+   P    
Sbjct: 111 LRLKGLQVYSFNGSLLNEPWTVKNKNGDYFKVFTPYWKQCIRQTTQSRVSSINQRPPPLT 170

Query: 185 TGPVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +     S+       P  AI+    +  GE  A++ L  F +  +  Y E R+ P+   T
Sbjct: 171 STSEQLSDWRLLPQKPNWAIEFPNYWEPGEHGAMNKLNFFIEHHLQDYQEARNHPSKTAT 230

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+L+P+L  G +SP Q WN ++E  +         A  +L EL WREF  +L+  +P + 
Sbjct: 231 SRLAPHLHFGEISPWQVWNAIEEAKLQPKC-DLRSADHFLAELGWREFSYYLLYHFPELP 289

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             K F    +   W +D   L+ W+ G TGFPI+DA MR+L   G+MHNR+RMI ASFL+
Sbjct: 290 -NKNFRQEFDAFPWQQDETHLKCWQTGMTGFPIVDAGMRELWHTGYMHNRVRMIVASFLI 348

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL++DWR G  +F + LLD DLA+N+  WQW A TG DS PYFRIFNPT+Q ++FDPQG
Sbjct: 349 KDLMIDWRAGAAWFYNTLLDADLANNSASWQWVAGTGADSAPYFRIFNPTLQSEKFDPQG 408

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            +I+ W+PEL+ VP Q+IH P     +     L  +YP P+VDH       L  Y + +K
Sbjct: 409 EYIKMWIPELSQVPRQWIHKPWEAPPQTLAITLGKDYPYPLVDHALVRKIALQHYQSLRK 468


>gi|47169691|dbj|BAD18969.1| photolyase [Bipolaris oryzae]
          Length = 634

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 175/487 (35%), Positives = 254/487 (52%), Gaps = 22/487 (4%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            W + DLR+ DN  L  A   + +K   ++AV+I +P+ W  H +S  +  F   S+  +
Sbjct: 141 HWFKRDLRVRDNTGLSKAAELAKSKGIGLVAVWIMSPQDWEAHLVSPPKCDFELRSVQLL 200

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRL 127
           ++ L +  I           +  + L    L+  V  +F N +YE +E+RR+ +L+   L
Sbjct: 201 KQELEELDIPLYIETVHERKNIKKRLVEMALEWNVKSVFCNLEYEPDELRREERLVRMML 260

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  +      D  ++PPGS+     + Y VYTP+ +A I  L                  
Sbjct: 261 EKGINMDPQHDDCVVPPGSLKTGTGKQYAVYTPWYRAWIAYLHAHPHLLNERSMPEKNPT 320

Query: 188 VTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                  + FD                 +    ++P GE  A+  L +F  EKV  Y + 
Sbjct: 321 GFREKFTKLFDSRVPDLPDCKSLTAEEKERFHHLWPAGEAAAIDRLERFLTEKVIKYKDT 380

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ PA+  T ++S + + G L+ R      ++   V  L   K G   W+ E+ WR+FYR
Sbjct: 381 RNFPALNSTGRISAHHAAGTLAARTSVRMARDINSVKKLDGGKEGIKGWIGEVAWRDFYR 440

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P VCM KPF      IEW  +    +AW QG TG+PI+DAAMR L   G+MHNR
Sbjct: 441 HVLVHWPYVCMNKPFKYEYTNIEWEYNDAHFEAWTQGRTGYPIVDAAMRCLKHTGYMHNR 500

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRMITASFL K LL+DWR+GE+YF++ L+DGD ASNNGGW ++ASTG D  PYFRIFNP 
Sbjct: 501 LRMITASFLAKHLLLDWRLGEQYFITHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNPW 560

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL-DKNDLSL--NYPLPIVDHKKACHH 469
            Q ++FD QG FIR W+ EL +V    IH P+    +   ++    YP PIV+HK A   
Sbjct: 561 TQSEKFDEQGEFIRLWVKELEDVQGAAIHNPYQAKGEAAKIAKKNGYPEPIVEHKFARER 620

Query: 470 TLNQYYA 476
            L +Y A
Sbjct: 621 CLARYKA 627


>gi|170691102|ref|ZP_02882268.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
 gi|170144351|gb|EDT12513.1| Deoxyribodipyrimidine photo-lyase [Burkholderia graminis C4D1M]
          Length = 493

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 176/494 (35%), Positives = 251/494 (50%), Gaps = 37/494 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISA----RQ 57
             LVW R DLR TD+ ALY A  + + +V  VF+          + W+     A    R+
Sbjct: 7   TALVWFRRDLRTTDHAALYHALKHCE-RVWCVFVFDTTILQPLIDTWQARHPGAPAQDRR 65

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI ASL ++  +L  +G          + D  + +     + RV  +F N  YE   +
Sbjct: 66  VEFILASLRELDDALRAQGGGLIVL----YGDPADLVPKLADELRVDAVFANHDYEPAAI 121

Query: 118 RRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ + +RL      C +F D V+     +L    + + V+TP++ A ++ L    L+ 
Sbjct: 122 ERDETVRERLAEAGRACLTFKDQVIFERAELLTGQNKPFTVFTPYKNAWLKQLTSFYLKP 181

Query: 177 LPVPA-IRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEKVYY 229
            PV         + P    +          P        P G   A  +L  F   ++  
Sbjct: 182 YPVETYANRLAALPPGLNRQLPTLEQLGFAPGNLAELDLPTGMSGAQRLLDDFVT-RIAS 240

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y E+RD PA +G S LS +L  G +S R       E  +        GA +WL+ELIWR+
Sbjct: 241 YAERRDFPAARGPSYLSVHLRFGTVSIRTLARLAHEISLQ---PDGRGAATWLSELIWRD 297

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA---WKQGYTGFPIIDAAMRQLNTI 346
           FY  +++ +P +  G  F    + + W +      A   W +G TG+P+IDAAM QLN  
Sbjct: 298 FYFMILSHHPRLASGASFKQEYDALRWEQGPAADAAFAAWCEGRTGYPLIDAAMLQLNRT 357

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+TASFLVKDL +DWR GE YF  QL D DLA+NNGGWQWAASTG D+ PYF
Sbjct: 358 GYMHNRLRMVTASFLVKDLGIDWRRGERYFADQLNDYDLAANNGGWQWAASTGCDAQPYF 417

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           RIFNP  Q ++FD  G FI+ +LP+L  +P +++HAP     +        L  +YP PI
Sbjct: 418 RIFNPITQSEKFDADGRFIKRYLPQLAKLPAKWVHAPWLAGAQKLAAFGVVLGEDYPQPI 477

Query: 461 VDHKKACHHTLNQY 474
           VDH +A   TL ++
Sbjct: 478 VDHAQARARTLARF 491


>gi|225865104|ref|YP_002750482.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
           03BB102]
 gi|225786063|gb|ACO26280.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus 03BB102]
          Length = 476

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 153/480 (31%), Positives = 249/480 (51%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +V  + D R+ DN AL+ A  + +  V+ V++          + +    +++ +++ VQK
Sbjct: 6   IVIFQKDFRLYDNPALFEAAQSGE--VVPVYVHD----ETFSMGSASKWWLHHAIIDVQK 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129
            L   G      + +      E + S   Q  +T +++N  Y+ ++++ ++ ++  L+  
Sbjct: 60  QLEALGSTLIIRKGNT----QEEILSLIEQLDITAVYWNICYDPDKLQSNQKMKIVLEGK 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IRLTGP 187
            ++CK F+  +LL P  I       YKV+TPF  A  + ++   +  +        L   
Sbjct: 116 GIVCKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQRIKGGNSLPAS 175

Query: 188 VTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           ++ S +       + + I+ ++   E+ A    +KF   K+ +Y E RD P     S L+
Sbjct: 176 LSVSELHLLPTIRWTSHIELIWEPTEEGAYKTCKKFFSSKLAFYCEGRDFPNENAHSMLA 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           PYLS G +S +  ++ L  +  +      +    S++ + IWREF  +L+  YP   + K
Sbjct: 236 PYLSFGQISVKWMYHYLINKSTERQCSLFEKQVNSFIRQFIWREFSYYLLYHYP-FTVYK 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P     E   WNK+  LL  W++G TG+P IDA MR+L   G+MHNR RM  ASFLVK L
Sbjct: 295 PLNKSFEHFPWNKEDELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+ W+ G ++FM  LL  D+A+N  GWQW A +G D+ PYFRIFNP  QG++FD  G +I
Sbjct: 355 LIPWQEGAKWFMDTLLAADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYI 414

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL ++P +YIH P    +         +   YPLP+VDHK A    L  Y + K+
Sbjct: 415 RKWVPELRDMPNKYIHKPWEAPEHILQKANIQIGHTYPLPVVDHKAARERALCAYKSMKE 474


>gi|85711625|ref|ZP_01042682.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
 gi|85694485|gb|EAQ32426.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
          Length = 468

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 177/471 (37%), Positives = 259/471 (54%), Gaps = 9/471 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R+DLR  DN AL AAC N    V A+F+     W+ H  +  +    +  L + +
Sbjct: 3   AVVWFRSDLRTVDNPALDAACLNHK-HVYALFLVPQRTWQAHDWAPIKVDLWWRHLAEFK 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L+ KGI F       F  S   +  +C + +V  ++ NR+Y ++E+ RDK      + 
Sbjct: 62  QELADKGIGFSIFTIDRFSQSGATIADFCEKHKVNTVYANREYPLDEIERDKQARACFEQ 121

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPAIRLTGP 187
           R +  + FD ++L+PP ++       YKV+TPF +A    + +  D              
Sbjct: 122 RDIEFQLFDGNLLVPPEAVETKQGGYYKVFTPFNRAWRTEVAKISDWTPESWRVENTVAS 181

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            T            +     +P+G Q  +  L +F + +V  Y  +RD P++ GTS +S 
Sbjct: 182 STELPQCPLE----RKNSQTYPVGRQAIMGKLGQFIEHQVDEYKARRDEPSVDGTSMMSA 237

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           Y  +G ++P+     L     +     + GA +WL E+ WREFY+HLM   P +  G+ +
Sbjct: 238 YFEMGAIAPKTVARALSSLSPEFPYGLEPGADTWLTEVAWREFYQHLMFHEPRLSRGENY 297

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
              T+ + W       QAW  G TGFPI+DA MRQLN  GWMHNRLRMI A+FLVKDLL+
Sbjct: 298 QTETQGLPWRDAEEDFQAWCDGRTGFPIVDAGMRQLNETGWMHNRLRMIVANFLVKDLLI 357

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YFM  L+DG   +NNGGWQW+AS G D+VPYFR+FNP  Q ++FDP G +IR 
Sbjct: 358 DWRKGEQYFMRNLVDGSFPANNGGWQWSASVGTDAVPYFRVFNPVRQSEKFDPDGIYIRT 417

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           W+ EL +VP+++IH PHS+L ++     Y  PIVDH +A    L+ +   K
Sbjct: 418 WIKELADVPSKHIHWPHSYLKQHK--TGYVSPIVDHSEARERFLSTFKQVK 466


>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
           4136]
          Length = 475

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/481 (34%), Positives = 247/481 (51%), Gaps = 13/481 (2%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T   V L W R DLR+TDN AL+AA   +  +VI  ++ +  +         + HF+  +
Sbjct: 3   TKTPVSLHWFRRDLRLTDNTALHAA-QTASTQVIPFYVLSSWKKAHAWTGPNRQHFLCGN 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + K+L   G              +  ++    +   T L+ NR  +      +  + 
Sbjct: 62  LESLAKNLEAIGSRLIIRSGET----VSEIERLIRETGATALYTNRDPDPYGQTIETHVI 117

Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
                  V   +  D+VL  P  +L      Y+V+TP+ K  +       L  +      
Sbjct: 118 ALCNKLGVAFHTCKDAVLHQPQEVLTGNGGPYRVFTPYSKNWLSLPKAQPLSKVRTLGDA 177

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKE-KVYYYVEQRDIPAIQG 241
            +  +    +P    +         P  GE+ A   ++ F    ++  Y E R+ P++ G
Sbjct: 178 PSPKIKSLPLPTVVHWHLPEPTATLPTPGEKAARDRMKTFVDSVRLPRYEETRNFPSVPG 237

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYP 299
           TSQLSP L  G++S R+ ++R ++       +P  +SG  +++ EL WREFY  ++ FYP
Sbjct: 238 TSQLSPDLRYGLISIRELYHRCQQALAQAGGQPAAQSGINTYIKELAWREFYMAVLHFYP 297

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V +   F P    + W++D   L AWK+G TGFP++DA MRQL   GWMHNR+RMI + 
Sbjct: 298 EV-LETDFNPDLRGVSWHQDPAGLAAWKEGRTGFPLVDAGMRQLLATGWMHNRVRMIVSM 356

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDL V W  GE +FM  L+DG++ASNNGGWQW+A TG D+ P+FRI NP  Q KR+D
Sbjct: 357 FLTKDLHVHWMEGESHFMQLLVDGEIASNNGGWQWSAGTGADAAPWFRIQNPWTQTKRYD 416

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P+G +I+ W+PEL +VP +   AP +      L+  YPLPIVDH      TL ++  A K
Sbjct: 417 PEGKYIKTWVPELKDVPAEMFFAPPTNGLP--LAKGYPLPIVDHATERDRTLQRFKVATK 474

Query: 480 Q 480
           +
Sbjct: 475 R 475


>gi|307543860|ref|YP_003896339.1| deoxyribodipyrimidine photolyase [Halomonas elongata DSM 2581]
 gi|307215884|emb|CBV41154.1| deoxyribodipyrimidine photolyase [Halomonas elongata DSM 2581]
          Length = 502

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 188/471 (39%), Positives = 265/471 (56%), Gaps = 7/471 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   L+W R+DLR+ DN AL AA   S+  V+AVF+ +  QW +HG  A +  F +  +L
Sbjct: 1   MPPSLIWFRSDLRVHDNTALAAAA--SEGPVVAVFLRSTAQWLEHGHGANKLDFWHRGVL 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L   GI   +    +F  + + L +   +    +L +N +Y +NE RRD  +   
Sbjct: 59  ALRAALHGLGIPLLHRDIDDFAAAPDALLALARETGARRLHFNHEYPLNERRRDASVVDA 118

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            +   +      D V   PG +       Y ++TPF KA  + +    L    +PAI+ +
Sbjct: 119 FEAAGLSAVGHHDGVAFAPGELRTGKGDFYGIFTPFAKAWHRQVTPERLALRDLPAIQAS 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PV     P           P  +P GE  A   L +F + +  +Y E+RD PA  GTS 
Sbjct: 179 LPVASDPEPELPALDTAPAAPENWPAGENAAADRLERFLRWRARHYAERRDFPAESGTSS 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL++G++S RQC      E    L +  +G  +W+NELIWREFY+H++  +P VC  
Sbjct: 239 LSPYLALGMISHRQCLQAALAENDGGLAEGDAGLTAWVNELIWREFYQHVVVGFPEVCRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F   TE + W  D+   +AW +G TG+P++DAAMRQL   GWMHNRLRM+TA FL K 
Sbjct: 299 RAFQAHTEALPWRDDTSAWRAWTEGRTGYPLVDAAMRQLRATGWMHNRLRMVTAMFLAKH 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE +F+  L+DG+ A+NNGGWQWAASTG D+VPYFRIFNP  Q +RFDP G F
Sbjct: 359 LLIDWRHGERFFLHHLVDGEFAANNGGWQWAASTGTDAVPYFRIFNPITQSRRFDPDGRF 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           I  WLPEL ++P +  H P            YP+PIV+H+ A    L  + 
Sbjct: 419 IAEWLPELADLPAKERHDPSPEQRAARR---YPMPIVEHRAARARALEAFK 466


>gi|332306448|ref|YP_004434299.1| Deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173777|gb|AEE23031.1| Deoxyribodipyrimidine photo-lyase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 482

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 183/476 (38%), Positives = 270/476 (56%), Gaps = 13/476 (2%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVWLR DLR + N A+  A  + ++ V AV+  T +QW ++ ++  +   IY  L+ +Q
Sbjct: 3   ALVWLRTDLRSSWNSAIDYAVASHES-VSAVYFVTQKQWSKYNMANSKIALIYQRLVSLQ 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L ++ I  Q      ++   E L   C++  VT ++ N +YE +E +RD  ++  L  
Sbjct: 62  EELKERNINLQVMDGGIYETLPEKLTELCVKNHVTHVYCNAEYEWDERQRDASVKNSLNK 121

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   +F D+ L+ P  I+N   + YKV+TP+ K  ++  ++         +   TG  
Sbjct: 122 MDVAFATFHDTCLVKPTEIMNLKNEPYKVFTPYFKRWLEMTLRQLPGVPEKCSANDTGLK 181

Query: 189 TPSNIPRFFDYPFQAID---------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              +  ++ +      +         P +P         +  F  E    Y + RDIP+I
Sbjct: 182 HSEDDNQYIESLISKTNRQGSDGSDAPSWPATASEITKKMNGFIVEFAPDYPKNRDIPSI 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GTS++SPYLSIG LSPRQC   + +E+ +  + P+ GA++W+ E+ WR+FYR++M  +P
Sbjct: 242 EGTSKISPYLSIGALSPRQCLFHVLQEYGEDALSPEHGAYTWVKEIAWRDFYRYVMFHFP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V  G PF    +  +W  +     AWK G TG+PI+DAAM  L   GWMHNRLRMI AS
Sbjct: 302 HVSRGLPFQKHYQYFKWENNQQHFDAWKAGETGYPIVDAAMIALKQTGWMHNRLRMIVAS 361

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F  K LL+ W+  E+YFMSQL+DGD ASNNGGWQW+AS G D+ PYFRIFNPT Q +RFD
Sbjct: 362 FYCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTDAAPYFRIFNPTTQSERFD 421

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           PQG FI+ WLP+L ++  + +H P    D   L   Y LPIV+HK +   T  Q+ 
Sbjct: 422 PQGEFIKTWLPQLAHLSPKQVHEPSKHCDVQRLG--YALPIVEHKASVARTKAQFK 475


>gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
 gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
          Length = 495

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 167/490 (34%), Positives = 249/490 (50%), Gaps = 29/490 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVW R DLR  D+ AL+ A      +V   FI       +   + R+  FI+ASL ++ 
Sbjct: 7   TLVWFRRDLRSFDHAALHHALRQG-RQVYCAFIFDRAILDELPSTDRRVEFIHASLQELD 65

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L   G             + + +     +  V  +F N  YE   + RD  +   L  
Sbjct: 66  TALRALGGGLIVRHA----RAEQAIPQLAAELGVDAVFCNHDYEPQAIARDGAVAAALAT 121

Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRL 184
                +++ D V+     +L+ + + + V+TP++ A ++ L      AD+ +  +  +R 
Sbjct: 122 DGRKLQTYKDHVIFEKDEVLSQSGKPFSVFTPYKNAWLKKLHTELAPADMPAYEIDTLRA 181

Query: 185 TGPVTPSNI---PRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                P+N+   P   +  F+  +      P G Q    +   F  +++  Y   RD PA
Sbjct: 182 HFAPLPANLSGIPALSELGFEKTNLTELNIPTGMQGGQALFDDFI-DRMPDYDSTRDFPA 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R    R  +     +    +GA  WL+EL+WR+FY  ++  +
Sbjct: 241 VKGPSYLSVHLRFGTVSIRALVRRALDAMR--IGAGGTGAAVWLSELVWRDFYFMILYQH 298

Query: 299 PSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P V   + F P  + I W        L QAW  G TG+P++DAAM QLN  G+MHNRLRM
Sbjct: 299 PHV-RERAFKPDYDAIIWENGPHAEELFQAWCDGRTGYPLVDAAMAQLNQTGYMHNRLRM 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TASFL+KDL +DWR GE YF  +L D DLA+NNGGWQWA+S+G D+ PYFRIFNP  Q 
Sbjct: 358 VTASFLIKDLGIDWRWGERYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPLTQS 417

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469
           ++FDP G FIR +LP+L  +  + IHAP              L  +YP P++ H +A   
Sbjct: 418 EKFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGITLGRDYPHPLLQHDEARAR 477

Query: 470 TLNQYYAAKK 479
           TL +Y   KK
Sbjct: 478 TLLRYAVVKK 487


>gi|253999882|ref|YP_003051945.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. SIP3-4]
 gi|253986561|gb|ACT51418.1| Deoxyribodipyrimidine photo-lyase [Methylovorus sp. SIP3-4]
          Length = 481

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 171/485 (35%), Positives = 253/485 (52%), Gaps = 25/485 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYA 63
           T  S  LVW R DLR  D+ ALY A   +   V   F+   +        + R+  FI+ 
Sbjct: 2   TTSSYALVWFRRDLRDFDHAALYHALK-AHTHVYCAFVFDTDILDALPDRADRRVEFIWE 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           S+ ++Q++L  +G             + E + +  ++ +   ++ NR YE + V RD  +
Sbjct: 61  SVRELQQALRSQGGDLIVLHA----CAKEAIPALAVKLKANAVYSNRDYEPDAVARDAKV 116

Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
             +L  H +    + D V+     +L  A + Y V+TP++ A ++ L    L++ PV   
Sbjct: 117 AAKLASHDIAFHQYKDQVIFEQDEVLTQAGKPYGVFTPYKNAHLKKLNDFYLQAYPVDRY 176

Query: 183 RL-TGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           R        + +P      F   +      P G      +  +F +E++  Y + RD PA
Sbjct: 177 RQHLAASDKTEMPTLESMGFARTNLAEMKLPTGMSGGQQLFAEF-QERMARYKDARDFPA 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS +L  G +S R       ++         +GA +WLNELIWR+FY  ++  +
Sbjct: 236 VKGPSYLSVHLRFGTVSIRHLARTAWQQ-------HNAGAETWLNELIWRDFYFQVLHHH 288

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V  G+ F    + I +     L  AW +G TG+P++DAAMRQLN  G+MHNRLRM+TA
Sbjct: 289 PQVAAGRAFKLEFDAIAFPNQQALFDAWCEGRTGYPLVDAAMRQLNQTGYMHNRLRMVTA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDLL+DWR GE YF  +L+D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q ++F
Sbjct: 349 SFLVKDLLIDWRWGERYFAERLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           D QG FIR ++PEL     + IHAP              +  +YP P+V+H       L+
Sbjct: 409 DAQGKFIRKYVPELAACHEKEIHAPWLMPPLRQQSLGLVIGKDYPAPVVEHSVQREKALS 468

Query: 473 QYYAA 477
            Y  A
Sbjct: 469 LYKNA 473


>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
 gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
          Length = 472

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 164/486 (33%), Positives = 257/486 (52%), Gaps = 32/486 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  +VW RNDLR+ DN AL AA   S A +IA+++   E   +  + +    +++ SL  
Sbjct: 3   APAVVWFRNDLRLADNPALTAAAR-SGAPIIALYVLDDESAGEWRMGSASRWWLHHSLTA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L++ G+     +          L++         +++NR YE   +RRD  ++ +L
Sbjct: 62  LAHDLARLGVTLTLRRGRAEF----VLENIVADAGAGAVYWNRLYEPWAMRRDSEIKSQL 117

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + R +  +SF+ S+L  PG + N   + ++V+TPF +A +     A+    P+PA +   
Sbjct: 118 RARGVMVESFNGSLLFEPGGLRNKQGEPFRVFTPFWRACLA----AEAPDAPLPAPKKLT 173

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPA 238
              P       D+      P +  G        E  AL  L +F K++V  Y   RD  A
Sbjct: 174 AAPPPASDALADWRLLPTKPDWAGGLRETWRAGEHAALERLAEFAKKRVRDYKIDRDFMA 233

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            +G S++SP+L  G +SPR+ W  + E   D          ++L E+ WREF  HL+   
Sbjct: 234 REGVSRMSPHLHFGEVSPRRIWAEITEAAGDAGA-------AYLREIGWREFCHHLLVAN 286

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +   +          W +D+  L+AW++G TG+P++DAAMR+L   G MHNR RM+ A
Sbjct: 287 PQMPE-RALDERFRDFPWREDAAALEAWRRGQTGYPLVDAAMRELWITGNMHNRARMVAA 345

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK LL+ W+ GE +F   L+D DLA+N+GGWQW A  G D+ PYFR+FNP +QG++F
Sbjct: 346 SFLVKHLLIPWQEGERWFWDTLVDADLANNSGGWQWVAGCGADAAPYFRVFNPVLQGEKF 405

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLN 472
           DP+G ++R ++PEL  +  ++IH P    ++        L   YP PIVDH KA    L 
Sbjct: 406 DPEGDYLRRYVPELARLDARHIHCPWEAPEEVLRAAGVRLGETYPRPIVDHAKARDRALK 465

Query: 473 QYYAAK 478
            + A +
Sbjct: 466 AFEATR 471


>gi|330916654|ref|XP_003297506.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1]
 gi|311329779|gb|EFQ94400.1| hypothetical protein PTT_07932 [Pyrenophora teres f. teres 0-1]
          Length = 632

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 169/488 (34%), Positives = 259/488 (53%), Gaps = 22/488 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLRI DN  L  A   +  +   +I +++ +P+ W  H +S  +  F   S+  
Sbjct: 138 VHWFKRDLRIRDNTGLSKAAELAKERGVGLIGIWLMSPQDWEAHLVSPPKCDFELRSVEL 197

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKR 126
           +QK LS+  I           +  + L     +  V  +F N +YE +E+RR+ +L+   
Sbjct: 198 LQKELSELDIPLYIETIPERKNVTKRLVELAQEWNVKNVFCNLEYEPDELRREERLVRMM 257

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  +    + D  ++PPGS+   A + Y VY+P+ +A I +L       +  P      
Sbjct: 258 LEKGIGFDPYHDDCVVPPGSLKTGAGKQYAVYSPWCRAWIAHLHAHPDLLIERPMPGRNP 317

Query: 187 PVTPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                   + F++                +    ++P GE  A+  L +F  EK+  Y +
Sbjct: 318 TNFRDKFSKLFEFSVPSLPECKALTPEEKERFSRLWPAGEAAAVDRLERFLVEKIVKYKD 377

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ PA+  T ++S + + G L+ R      ++      L   K G  +W+ E+ WR+FY
Sbjct: 378 TRNFPALNSTGRVSVHHAAGTLAARTSIRMARDINSAQKLDGGKDGVKTWIGEVAWRDFY 437

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RH++  +P VCM KPF      I W  ++    AW +G TG+PI+DAAMR LN  G+MHN
Sbjct: 438 RHVLVNWPYVCMNKPFKYEYTNIHWEYNTAHFTAWTRGLTGYPIVDAAMRCLNHTGYMHN 497

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRMITASFL K LL+DWR+GE+YF++ L+DGD ASNNGGW ++ASTG D  PYFRIFNP
Sbjct: 498 RLRMITASFLSKHLLLDWRLGEQYFLTHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 557

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACH 468
            IQ ++FD  G FIR W+ EL+ V  + +H P++   K       + YP P+V+H+ A  
Sbjct: 558 WIQSEKFDADGEFIRMWVEELSGVQGKEVHNPYAAGGKAAEVARRMGYPEPVVEHRVARE 617

Query: 469 HTLNQYYA 476
             L +Y  
Sbjct: 618 RCLKRYKE 625


>gi|169595566|ref|XP_001791207.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15]
 gi|111070898|gb|EAT92018.1| hypothetical protein SNOG_00523 [Phaeosphaeria nodorum SN15]
          Length = 632

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 169/487 (34%), Positives = 254/487 (52%), Gaps = 21/487 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLRI DN  L  A   +  K   +I V+I +P+ W  H +S  +  F   S+  
Sbjct: 139 IHWFKRDLRIRDNTGLSEAAALAKEKGIGLIGVWIMSPQDWVAHLVSPPKCDFELRSVEL 198

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKR 126
           ++K L +  I           +  + L     +  V  +F N +YE +E+RR+   +E  
Sbjct: 199 MKKELDELDIPLHIETVPKRRNVAKRLLELAQEWNVKNIFCNLEYEPDELRREARLVELM 258

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRL 184
           L++ +      D  ++PPG++     + Y VY+P+ ++ + +L      L   P+P   L
Sbjct: 259 LENGIGFNPQHDDCVVPPGALKTGGGKQYAVYSPWFRSWVAHLHAHPHLLNERPMPERNL 318

Query: 185 TG------------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
            G                       D        ++P GE  A+  L +F  EK+  Y  
Sbjct: 319 AGFREKHAGLFDAKIPDLPESKSLTDEEKTRFHALWPAGEAAAIDRLERFASEKIGRYQA 378

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQ-CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ PA+  T ++S + + G L+ R              L     G  +W++E+ WR+FY
Sbjct: 379 TRNFPALNSTGRVSAHHAAGTLAARTSVRMARSANTSKKLDGGSDGIKTWISEVAWRDFY 438

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RH++  +P VCM KPF      IEW  +     AWK+G TG+PI+DAAMR L    +MHN
Sbjct: 439 RHVLVHWPYVCMNKPFKFEYTNIEWEYNDAHFTAWKEGRTGYPIVDAAMRCLKHTAYMHN 498

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMITASFL K LL+DWR+GE+YFM+ L+DGD ASNNGGW ++ASTG D  PYFRIFNP
Sbjct: 499 RNRMITASFLAKHLLLDWRLGEQYFMTHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 558

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHKKACHH 469
            +Q ++FD +G FIR W+ EL+ V  + +H P++     +++    YP P+V+HK A   
Sbjct: 559 WLQSEKFDEEGDFIRLWVEELSGVQGKAVHNPYADKKAAEVARKNGYPKPVVEHKFARER 618

Query: 470 TLNQYYA 476
            L +Y A
Sbjct: 619 CLARYKA 625


>gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
 gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
          Length = 459

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 186/473 (39%), Positives = 247/473 (52%), Gaps = 23/473 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + + W R DLR++DN AL AA   S   V+ V+I  P        S  +S F+ A L  +
Sbjct: 1   MIIHWFRRDLRLSDNPALSAAALASGGHVLPVYILDPTLLNGLWASPARSAFLIAGLRAL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L   G+           + +  L     +   + + +NR Y     RRD+ +E  L 
Sbjct: 61  DAQLQHHGLRLIVRHG----EPVATLLHLVAETGASAVTWNRDYSPYSRRRDQAIEAALH 116

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                 +   D  + PP  IL      Y VYTP+ +     L  ADLR +  P ++    
Sbjct: 117 AAGCAVQHTHDVAICPPDQILTKNATPYSVYTPYARQWRTWLAHADLRPVAAPILQPCRD 176

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +  S+          A  P+ P GE  A  IL +F +  +  Y  QRD+PA+ GTS+LSP
Sbjct: 177 LPVSHAIP----DLLAPHPLPPAGELAAQTILDEFTRTSLRTYATQRDLPAVPGTSRLSP 232

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G+++ RQC    +         P  GA +W+ EL WR+FY  ++  +P V  G  F
Sbjct: 233 YLRFGMIAVRQCLAVAQAH-------PGPGADTWIAELAWRDFYIQVLFHHPHVLRG-AF 284

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P  + + W  D  L  AW  G+TG+P++DAAMRQL   GWMHNR RMI ASFL KDLL+
Sbjct: 285 KPQYDDLAWENDPDLFAAWCAGHTGYPMVDAAMRQLQQEGWMHNRARMIVASFLTKDLLI 344

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YFM  LLDGD A+NNGGWQWAASTG D+ PYFRIFNPT QG++FDP G +IR 
Sbjct: 345 DWRWGERYFMQMLLDGDPAANNGGWQWAASTGTDAQPYFRIFNPTCQGQKFDPHGDYIRR 404

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474
           +LPEL  VP   IH PH             +  +YP P+VDH +     L  Y
Sbjct: 405 YLPELAGVPNHKIHTPHLLSASEQMRAGVRIGHDYPAPLVDHAQRRERALGIY 457


>gi|328860259|gb|EGG09365.1| hypothetical protein MELLADRAFT_34389 [Melampsora larici-populina
           98AG31]
          Length = 578

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 173/496 (34%), Positives = 256/496 (51%), Gaps = 24/496 (4%)

Query: 4   TTAMSVHLVWLR-NDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSH 59
                + + W+R  DLR+ DN+AL AA   +    A +I + I +P  +  H  SAR+  
Sbjct: 61  NDKKPIVVYWMRMRDLRLADNRALSAASQVAQTLQAHLIVLHIFSPGDYHAHDRSARRID 120

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L+ ++  L +  I              + +        VT++F N ++E++E+RR
Sbjct: 121 FVLRNLIDLRLRLRELNIPLYTISIEKRKTIPKRVVELLNAWEVTRIFANIEHEVDELRR 180

Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---IQNLVQADLR 175
           D  L        +      D+ L+ PG +L    + Y V++P++K     I + +   L 
Sbjct: 181 DIELINLCHPQGIKVDLSHDTCLVEPGKVLTKENKPYSVFSPWQKNWANIINSDLSNHLD 240

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-------- 227
           + P         +    +   F+    +  P F + ++ A  I   +  +          
Sbjct: 241 AAPEIKGNDPSAMDDDRLQSLFEVEIPSFIPGFELPDEEAKRIRDYWEADTKPKSTPTIL 300

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-------SGAFS 280
             Y   R+ P + GTS+LS YL+ G++SPR C     E+        K       +G   
Sbjct: 301 EEYSTLRNRPDLPGTSRLSAYLAAGIISPRTCVRITLEKNGKQFKNQKLQVDQRDTGIGM 360

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           W +EL WR+FY+H++A +P V MG+ F    + + W KD   L+AWK G TGFP IDA M
Sbjct: 361 WQSELGWRDFYQHVLAAWPRVSMGQNFNQKFDPMVWEKDESKLEAWKLGKTGFPFIDACM 420

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQL  +G+MHNR RM  A FL KDLL+DWRIGE++FM  L+DGDL SNNGGWQW++STG 
Sbjct: 421 RQLLEMGYMHNRGRMCVAMFLTKDLLIDWRIGEKWFMQHLVDGDLGSNNGGWQWSSSTGC 480

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLP 459
           DS PYFRIF P  Q ++ DP G FIR ++PELN++  + IH P+  L  +    L YP P
Sbjct: 481 DSQPYFRIFAPLSQSEKSDPNGDFIRKYVPELNSLSGKAIHDPYKALSPDKFKKLGYPKP 540

Query: 460 IVDHKKACHHTLNQYY 475
           IVDH       L +Y 
Sbjct: 541 IVDHSVVRKRALVRYK 556


>gi|90419365|ref|ZP_01227275.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336302|gb|EAS50043.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 483

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 158/492 (32%), Positives = 233/492 (47%), Gaps = 24/492 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  T+     +VWLR+DLR+ DN AL  A  +S   V+ + +   E      +      +
Sbjct: 1   MTQTSQSEPIVVWLRDDLRLDDNPALAEAA-DSGRPVVPLVVLDEESDGVRSLGGTHKWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    K L+ KG      +    +  ++ ++S       T L  NR+Y+      D
Sbjct: 60  LHHSLQCFGKDLADKGAPLILRRGKASEHVVDIVES----TGATTLLMNRRYDQASRAVD 115

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             +E  L   V  + F  ++L  P  +       YKVYTPF     +NL + + R    P
Sbjct: 116 DAVEAALGSDVEVQRFTANILHDPDKVRTKTGGWYKVYTPFW----KNLAEDEPRDPIDP 171

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVE 232
             +L          R  ++      P +  G        E  A     +F  E +  Y +
Sbjct: 172 PDKLASLDDQPRSDRLEEWDLLPTRPDWSGGIAAFWKVGEAAAHERFEEFSDEWLNDYPD 231

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD P    TS++SP+L  G +SP + W+  +         P     ++  EL+WR+F  
Sbjct: 232 GRDRPGDDATSRMSPHLRWGEISPYRLWHMAEACANRRKTIPGDALKTFKKELVWRDFNY 291

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HL+  +  +     +    +   W      L+AW++G TG+PI+DA MRQL   GWMHNR
Sbjct: 292 HLLHNFGPLATQN-YNDRFDAFPWRSAKSELRAWQKGLTGYPIVDAGMRQLWECGWMHNR 350

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI  SFL KDLL+DWR GE +F   L+DGD+ASN   WQW   +G D+ PYFR+FNP 
Sbjct: 351 VRMIVGSFLTKDLLIDWREGERWFWDTLVDGDIASNTAQWQWIGGSGADAQPYFRVFNPV 410

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKA 466
            Q +RFD  G +IR ++PEL ++P + +HAP             +L   YP PIVDH  A
Sbjct: 411 TQSQRFDGDGDYIRRFVPELADLPDKVLHAPWEADADTLAEAGVELGKTYPKPIVDHGTA 470

Query: 467 CHHTLNQYYAAK 478
               L+ Y   K
Sbjct: 471 RKRALDAYGEVK 482


>gi|284054552|ref|ZP_06384762.1| Deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
           Paraca]
          Length = 474

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 170/476 (35%), Positives = 244/476 (51%), Gaps = 16/476 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA     ++V+ VF   PE      I+  +  ++   L  +Q+
Sbjct: 6   LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      Q    D+  + L    +      +++NR  E    +RD+ +E+ L   
Sbjct: 65  DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAIYWNRDVEPLPRQRDRSVEESLTEV 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-----RL 184
            I  ++F D VL  P +I   + + YKVYTP+ +  IQ       + L    +     + 
Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKA 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                   +P   D  F   +P +   GE  A   L  FC   +Y Y E R+ PAI GTS
Sbjct: 181 ALEAGAIALPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAIDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
            LSP L  G +  R  W + +E        + +    +W  EL WREFY+  +  +P++ 
Sbjct: 241 VLSPALRFGAIGIRTLWQKTQEIMALTRSDEARHHIQTWQQELAWREFYQQALYHFPALA 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G  F    ++  W+ +    QAW QG TG+PI+DAAMRQLN  GWMHNR RMI ASFL 
Sbjct: 301 TG-AFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT 359

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL+++W+ GE+YFM  L+DGDLASNNGGWQW++S+G D  P  RIFNP  Q +++DP+ 
Sbjct: 360 KDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQTQKYDPEA 418

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +IR WLPEL N+ T ++         +  +  YP PIVDH +      + Y   K
Sbjct: 419 EYIRQWLPELRNLDTAHLVT-GKISSGDRQACGYPQPIVDHNRQQKLFKSIYSQLK 473


>gi|237654350|ref|YP_002890664.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
 gi|237625597|gb|ACR02287.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
          Length = 484

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 176/491 (35%), Positives = 256/491 (52%), Gaps = 26/491 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASL 65
           MS  LVW R DLR  D+ AL+ A   ++ +V   F+            + R+  FI+ASL
Sbjct: 1   MSSALVWFRRDLRSFDHAALHHALRFAE-RVHCAFVFDTAILDALPARADRRVEFIHASL 59

Query: 66  LQVQKSLSQKGIVFQYH---QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            ++  +L                    + + +     +  V K+F NR YE + + RD  
Sbjct: 60  AELDAALDAMARAAGGTGGGLIVRHGRAEDEIPRLAAELGVDKVFANRDYEPDAILRDSR 119

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP- 180
           + +RL    I  + F D V+     +L    + Y V+TP++ A ++ +  + + S  V  
Sbjct: 120 VAQRLAEDGIGYEDFKDQVVFERDEVLTQTGKPYSVFTPYKNAWLKAVDDSQVSSHAVEK 179

Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            A  L        +P   D  F   +      P+G      +   F   ++  Y   RD 
Sbjct: 180 YAAHLAPKPAGETLPGLADIGFAPTNLAELNMPVGMSGGKRLFDDFAA-RIERYKRARDF 238

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA++G S LS +L  G +S RQ     +        +   GA +WL+ELIWR+FY  ++ 
Sbjct: 239 PAVKGVSYLSTHLRFGTVSIRQLAAHARA-------RGGEGAETWLSELIWRDFYHQILW 291

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P V + + F P  + ++W+    L  AW +  TG+PI+DAAMRQL+  GWMHNRLRMI
Sbjct: 292 HHPQV-VDRAFRPEYDAVQWDDAPELFAAWCEARTGYPIVDAAMRQLDQTGWMHNRLRMI 350

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL VDWR+GE YF  +L D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q +
Sbjct: 351 VASFLTKDLGVDWRLGERYFAIRLNDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSE 410

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHT 470
           +FDP+G FIR +LPEL  VP ++IHAP +         +  + ++YP PIVDH  A   T
Sbjct: 411 KFDPEGRFIRRYLPELARVPDKFIHAPWTMGGIDQTACRTKIGVDYPGPIVDHAAARERT 470

Query: 471 LNQYYAAKKQS 481
           L ++   K  +
Sbjct: 471 LQRFGVVKNDA 481


>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
          Length = 474

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 169/476 (35%), Positives = 245/476 (51%), Gaps = 16/476 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA     ++V+ VF   PE      I+  +  ++   L  +Q+
Sbjct: 6   LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPEILSGDDIAPVRVAYMLGCLQCLQE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      Q    D+  + L    +      +++N+  E    +RD+ +E+ L   
Sbjct: 65  DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-----RL 184
            I  ++F D VL  P +I   + + YKVYTP+ +  IQ       + L    +     + 
Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCQRLKSTGLTEAQEKA 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                   +P   D  F   +P +   GE  A   L  FC   +Y Y E R+ PAI GTS
Sbjct: 181 ALEAGAIALPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRNFPAIDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
            LSP L  G +  R  W + +E        + +    +W  EL WREFY+  +  +P++ 
Sbjct: 241 VLSPALRFGAIGIRTLWQKTQEIIALTRSDEARHHIQTWQQELAWREFYQQALYHFPALA 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           +G  F    ++  W+ +    QAW QG TG+PI+DAAMRQLN  GWMHNR RMI ASFL 
Sbjct: 301 IG-AFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLT 359

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL+++W+ GE+YFM  L+DGDLASNNGGWQW++S+G D  P  RIFNP  Q +++DP+ 
Sbjct: 360 KDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQTQKYDPEA 418

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +IR WLPEL N+ T ++         +  +  YP PIVDH +      + Y   K
Sbjct: 419 EYIRQWLPELRNLDTAHLVT-GKISSGDRQACGYPQPIVDHNRQQKLFKSIYSQLK 473


>gi|313624820|gb|EFR94752.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023]
          Length = 467

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 178/481 (37%), Positives = 252/481 (52%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY A    D  +I +F   PEQ+ +    +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHAXXEED--LILLFQVNPEQFIK---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           Q+ L++       H    F + IE L     +     K+F+NR        RD+  +   
Sbjct: 57  QQELNKN-----THLQIMFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAAQAFF 111

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               +   S+ DS L     +   A + YK++TP+ K   + + +  L+    P      
Sbjct: 112 ADNEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPLKVTLKPENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P F  GE+ A   L  F KE +  Y + RD+PA+  TS LS
Sbjct: 172 SLFPKYEEQFRELIQDL--PAFDSGEKAANTRLANFVKEDLASYDKARDVPALDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L++E      +   G  ++  EL WR+FY  +   +P     +P
Sbjct: 230 RYLRTGEISIRTVWQALQKE------EATEGRATFEKELCWRDFYNMIYVSFPKQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    + W++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKKWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL ++P ++IH P    +         L  +YPLPI+DHK+     + +Y  +K+ 
Sbjct: 403 KYVKELRDLPDKFIHQPEKMSETEQQEHGLILGKDYPLPIIDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|300311186|ref|YP_003775278.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1]
 gi|300073971|gb|ADJ63370.1| deoxyribodipyrimidine photolyase (photoreactivation) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 171/496 (34%), Positives = 247/496 (49%), Gaps = 34/496 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR+TD+ ALY A   S  +V  VF+   +             R+  F+ AS+
Sbjct: 7   SLVWFRRDLRMTDHAALYYALSQS-RQVWCVFVFDTDILAALKAEGVTQDRRIDFLLASV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++ ++L   G        S    ++  + +   +  V  ++ N  YE   V RD  + +
Sbjct: 66  AELDEALRHAGGGLIVLHGS----AVTQIPALAAELDVQAVYANTDYEPAAVERDAAVAQ 121

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----LRSLPVP 180
            L +      S+ D V+     +L  + + + V+TP++ A +  L  AD    L+  PV 
Sbjct: 122 TLAKSGAQLLSYKDQVIFEKDEVLTQSAKPFSVFTPYKNAWMSKLAAADGDFFLKPYPVE 181

Query: 181 AIRLTGPVTP-------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                    P        +  +    P    +   P G   A  +L +F  +++  Y   
Sbjct: 182 KYLTALASPPGKAGHALPSHRQLGFAPSNLQELKIPTGMSGAQSLLDEFL-DRIGSYGAA 240

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA++G S LS +L  G +S R       +          +GA  WL+EL WR+FY  
Sbjct: 241 RDFPAVKGPSYLSVHLRFGTISIRTLARAAMQAMHAGQG--AAGAAVWLSELTWRDFYFM 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           ++  +P V     F P  + I+W +      L  AW +G TG+P++DAAM Q+N  G+MH
Sbjct: 299 ILHHHPRVTRH-AFKPEYDAIQWEQGPQAEALFAAWCEGRTGYPLVDAAMAQINQSGYMH 357

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NRLRM+ ASFL KDL +DWR GE YF   L D DLA+NNGGWQWA+S+G D+ PYFRIFN
Sbjct: 358 NRLRMVVASFLTKDLGIDWRWGERYFARHLNDFDLAANNGGWQWASSSGCDAQPYFRIFN 417

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
           P  Q ++FDP G FIR +LP+L  +  + IHAP +            L  NYP PIVDH 
Sbjct: 418 PVTQSEKFDPDGKFIRRYLPQLAKLSNKRIHAPWTATPDERMDAGVVLGQNYPRPIVDHA 477

Query: 465 KACHHTLNQYYAAKKQ 480
           +A   TL +Y   KK 
Sbjct: 478 QARERTLARYAVVKKA 493


>gi|329904543|ref|ZP_08273850.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547937|gb|EGF32686.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 504

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 175/492 (35%), Positives = 257/492 (52%), Gaps = 28/492 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ D  AL+ A   S   V  VFI   +  +      R+  F++ASL ++ 
Sbjct: 14  SLIWFRRDLRVFDQAALHHALRQSRT-VFCVFIFDSDILQHLPEQDRRIEFLHASLTELH 72

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128
           + L + G             ++E + +   +  V  +F N  YE   + RD  +   LQ 
Sbjct: 73  EELVKLGGALIVRHA----RAVEAIPALARELDVEAVFINHDYEPQAIARDAAIATALQQ 128

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRL 184
           H +   S  D V+     +L+ A + + V+TP++ A ++ L        +R+ PV  +  
Sbjct: 129 HDIALHSSKDQVVFENDEVLSLAGKPFSVFTPYKNAWLKQLQFNSSDVHVRAYPVEPLAD 188

Query: 185 TGPVTPSN--IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              V+P    +P   +  F   +      P G      ++  F  E++  Y + RD PAI
Sbjct: 189 RFAVSPVAHVMPTLAELGFAPTNFAQLKIPTGMSGGQQLVDNFM-ERIDKYKQTRDFPAI 247

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +G S LS +L  G +S R    R  E     +    SGA +WL EL+WR+FY  ++  +P
Sbjct: 248 KGPSYLSVHLRFGTVSIRHLARRACE--AARIAADASGANTWLAELVWRDFYFMILQHHP 305

Query: 300 SVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            V  G  F P  + I+W        L QAW  G TG+P++DAAM Q+N  G+MHNRLRM+
Sbjct: 306 RVVHG-AFKPDYDAIQWETGPAADALFQAWCDGRTGYPLVDAAMAQINQTGYMHNRLRMV 364

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TA FL+KDL +DWR GE YF  +L+D DL++NNGGWQWA+S+G D+ PYFRIFNP  Q +
Sbjct: 365 TACFLIKDLGIDWRRGEAYFAEKLIDFDLSANNGGWQWASSSGCDAQPYFRIFNPITQSE 424

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHT 470
           +FD  G FIR +LP+L  +  + IHAP             +L +NYPLP+V H  A   T
Sbjct: 425 KFDTDGRFIRRYLPQLAQLGNKQIHAPWLLTKMELDHAGVELGVNYPLPVVQHDVARKQT 484

Query: 471 LNQYYAAKKQSL 482
           L +Y   KK ++
Sbjct: 485 LARYAVVKKVAV 496


>gi|94311677|ref|YP_584887.1| deoxyribodipyrimidine photo-lyase type I [Cupriavidus metallidurans
           CH34]
 gi|93355529|gb|ABF09618.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
           metallidurans CH34]
          Length = 513

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 178/492 (36%), Positives = 248/492 (50%), Gaps = 28/492 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYA 63
           +  LVWLR DLR  DN AL+ A  +   +V  VF+   E           + R+  FI  
Sbjct: 25  TRGLVWLRRDLRTDDNAALHYALKHC-RQVWCVFVFDREILAPLLARGLHADRRVEFILR 83

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  ++++L   G        +      + +     +  V  +F N  YE     RD+ +
Sbjct: 84  SLEPLRRALEDSGGGLIVLDGTAR----QAIPRLAAELEVEAVFANHDYEPAANDRDEAV 139

Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            + L     +  +F D V+     IL    + + V+TP++ A ++ +   DLR  P+   
Sbjct: 140 RRTLAADSRVLLTFKDQVIFERDEILTGQGRPFSVFTPYKNAWLRTVRPFDLRPYPIEKH 199

Query: 183 RLTGPVTPS----NIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           + T    P      +P   D  F A +      P G   A  +  +F   ++  Y  +RD
Sbjct: 200 QETLAPVPQRYRGQLPTLADLGFTATNLAGIAMPTGSDGAHALFDEFLS-RIGDYGRRRD 258

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            PA++G S LS +L  G +S R       +  +        GA  WL+ELIWR+FY  ++
Sbjct: 259 FPAVRGPSYLSVHLRFGTISIRTLARAAHDTML-RGGAASEGATVWLSELIWRDFYFMIL 317

Query: 296 AFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             +P V  GK F    + + W           AW    TG+P+IDAAM Q+   G+MHNR
Sbjct: 318 HHHPRVAEGKSFHAEYDGLRWIAPATGDRYFAAWCDARTGYPLIDAAMLQIRQSGYMHNR 377

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+TASFLVKDL VDWR GE+YF  QL D DLA+NNGGWQWAASTG D+ PYFRIFNP 
Sbjct: 378 LRMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPYFRIFNPV 437

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
            Q ++FDPQG FIR +LP L  +P +YIHAP +  ++        L  +YP PIV H  A
Sbjct: 438 TQSEKFDPQGQFIRRYLPMLAALPDRYIHAPWTAPNEVLRAAGVTLGKDYPRPIVQHDVA 497

Query: 467 CHHTLNQYYAAK 478
              TL +Y   K
Sbjct: 498 RKETLERYGVVK 509


>gi|170727122|ref|YP_001761148.1| deoxyribodipyrimidine photo-lyase [Shewanella woodyi ATCC 51908]
 gi|169812469|gb|ACA87053.1| Deoxyribodipyrimidine photo-lyase [Shewanella woodyi ATCC 51908]
          Length = 469

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 192/473 (40%), Positives = 280/473 (59%), Gaps = 11/473 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+W+R DLR  DN AL  A  N      A+FI+TP+QW  H  +  +  FI   LLQ+
Sbjct: 1   MVLLWIRRDLRCFDNPALMDAVANGCR--YALFISTPQQWDLHHEAPIKLDFIRRHLLQL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L + G+   +   ++F    E L  +C +  + ++  N + E NE +RD+ L   L 
Sbjct: 59  EQQLFELGVKLVHLTSTDFSAQSELLIRFCREHHIHRVLANSEPEFNEQQRDRSL---LS 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  + +D  V+ P G +LN + +M+KV+TPF+KA ++++ +  +  +  P        
Sbjct: 116 SGLDIEFYDCDVIAPRGRVLNQSGEMFKVFTPFKKAWLKHVREFGVECIGRPQGLSKPLS 175

Query: 189 TP------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            P                  ++   +P+ ++    ++  F   KV  Y E+RD PAI+GT
Sbjct: 176 PPARDLIGELNSSSSLINSSSLSTSWPLADEVMEKVIPHFFSAKVCDYKERRDFPAIKGT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL+IG LSPR  + +L   +  L+      AF WLNELIWR+FY+HL+  YP + 
Sbjct: 236 SGLSPYLAIGALSPRTLYQQLLARYPQLIEDDNHPAFCWLNELIWRDFYKHLLFHYPRLS 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               F+    K +W        AW +G TG+P++DAAMRQL   GWMHNRLRM+ ASFL 
Sbjct: 296 KQTSFLEKYAKTQWPGTQAEFDAWSKGETGYPLVDAAMRQLVRTGWMHNRLRMVVASFLT 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LLVDWR GE++FMS L+DGD ++NNGGWQWAASTG D+ PYFR+FNP +Q ++FDP G
Sbjct: 356 KHLLVDWRQGEQFFMSHLIDGDHSANNGGWQWAASTGCDAQPYFRVFNPILQSQKFDPNG 415

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            FIR +LPELN++PT+YIH PH ++ K+ +S  Y  P+V+HK A    +  Y 
Sbjct: 416 DFIRKYLPELNDIPTKYIHFPHDYMAKHGVSDTYWPPVVEHKAARLRAIAFYK 468


>gi|91777293|ref|YP_552501.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
           LB400]
 gi|91689953|gb|ABE33151.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia xenovorans
           LB400]
          Length = 499

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 176/494 (35%), Positives = 251/494 (50%), Gaps = 37/494 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57
             LVWLR DLR TDN ALY A  + + +V  VF+            W           R+
Sbjct: 13  TGLVWLRRDLRNTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDAWHARHPDTQPQDRR 71

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI A+L ++ ++L   G          + +  E +     +  V  +F N  YE   +
Sbjct: 72  IEFILAALGELDEALRADGGGLIVL----YGNPAELVPKLADELGVDAVFANHDYEPVAI 127

Query: 118 RRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD  + +RL        +F D V+     +L    + + V+TP+R A ++ L   DL+ 
Sbjct: 128 ERDGTVRERLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSAFDLKP 187

Query: 177 LPVPAIRLTGPVTPS----NIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYY 229
            PV          PS     +P      F   +      P G   A  +L  F   ++  
Sbjct: 188 YPVETYAKRLAALPSKFDRQLPTLEQLGFAPSNLGELNLPAGMSGAQRLLDDFMT-RIDS 246

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y ++RD PA +G S LS +L  G +S R       E  +        G+ +WL+ELIWR+
Sbjct: 247 YADRRDFPAAKGPSYLSIHLRFGTVSIRTLARLAHEMSLQ---PDGQGSATWLSELIWRD 303

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           FY  ++A +P +  G  F    +++ W +         AW  G TG+P++DAAM QLN  
Sbjct: 304 FYFMILAHHPRLARGASFREEYDRLRWEQGLQADEAFAAWCNGRTGYPLVDAAMLQLNRT 363

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D ++NNGGWQWAASTG D+ PYF
Sbjct: 364 GYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAASTGCDAQPYF 423

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           RIFNP  Q ++FD +G FI+ +LP+L  +P+++IHAP     +        L  +YP PI
Sbjct: 424 RIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAPWLAGAERLADCGVVLGKDYPAPI 483

Query: 461 VDHKKACHHTLNQY 474
           VDH +A   TL ++
Sbjct: 484 VDHAEARARTLARF 497


>gi|254481485|ref|ZP_05094729.1| deoxyribodipyrimidine photolyase family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214038113|gb|EEB78776.1| deoxyribodipyrimidine photolyase family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 483

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 153/487 (31%), Positives = 233/487 (47%), Gaps = 24/487 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W R DLR+TD   L+AA   S   VI  FI   E   +  +      +++ SL  +
Sbjct: 6   PVIYWFRRDLRLTDLPGLHAALA-SGKPVIPCFILDDESTEEWAMGGASRWWLHHSLQAL 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL-EKRL 127
            KS++++G      +     D+   L++   +     ++ +  YE +    +K L E+  
Sbjct: 65  TKSVAEQGGNLLVRRG----DTQAQLNALVNETGAAAVYCSELYEPDARELEKTLGEELA 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI----- 182
           +          ++   P  + N +   +KV+TPF +  +Q L    L             
Sbjct: 121 KSGAALHCLPGTLFFRPHEVRNGSGLPFKVFTPFWRHCMQRLPSMPLPQKTTFTTNSFLQ 180

Query: 183 RLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                ++        D P  A D    +  GE  A   L++F    +  Y + RD PA  
Sbjct: 181 HSLTGLSCEQWQLLPDSPNWAADWHSYWTPGEAGATETLKQFVTNTLADYAQGRDFPARD 240

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +S+LS +   G +SPRQ W  +           +     +L+EL WR+F  HL+  +P 
Sbjct: 241 ASSRLSAHFHWGEISPRQAWAAV----NKAPGSNEKDQHKFLSELGWRDFNHHLLFHFPH 296

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +   +PF P   ++ W       +AW +G TG+PI+DA MR+L   G+MHNR+RMI ASF
Sbjct: 297 IA-DRPFKPSFSQMPWQGSDETFKAWCEGRTGYPIVDAGMRELWQTGFMHNRVRMICASF 355

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LL+ W+ G  +F   L+D DLA+N+GGWQW A  G D+ P+FRIFNP +QGK+FD 
Sbjct: 356 LTKHLLLPWQWGARWFWDTLVDADLANNSGGWQWVAGCGADASPWFRIFNPMLQGKKFDG 415

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474
            G ++R WLPEL  +  + +  P              L  +YP PIVDHK+A    L+ Y
Sbjct: 416 DGEYVRRWLPELAGLSDRDLQIPWEAPPLVLADAGVTLGSDYPFPIVDHKEARVAALDAY 475

Query: 475 YAAKKQS 481
            A  K S
Sbjct: 476 DAVSKAS 482


>gi|113867687|ref|YP_726176.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
 gi|113526463|emb|CAJ92808.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
          Length = 513

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 176/492 (35%), Positives = 247/492 (50%), Gaps = 28/492 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS----ARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V  VF+   E             R+  FI  SL
Sbjct: 28  GLVWFRRDLRADDHAALHYALKHC-RQVWCVFVFDREILDPLIARGRKVDRRVEFILRSL 86

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++++L+  G           D + + +     +     +F N  YE    RRD  + +
Sbjct: 87  EPLRRTLTDAGGGLIVLD----DIARDAIPRLAAELDADAVFTNHDYEPAAKRRDTAVRQ 142

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L     +  +F D V+     +L    Q + V+ P++ A ++ +   DLR  PV     
Sbjct: 143 ALASDSRVLFTFKDQVIFEADELLTGQGQPFSVFAPYKNAWLRAVQPFDLRPYPVDQYLG 202

Query: 185 TGPVTPSNIPR----FFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                P    +      D  F A +      P G   A  +  +F  +++  Y  +RD P
Sbjct: 203 ALAPVPRQYQKASPMLHDLGFAASNLAEIAMPTGSDGARALFDEFI-DRIGDYGYRRDFP 261

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           +++G S LS +L  G +S R       +  +       +GA  WL+ELIWR+FY  ++  
Sbjct: 262 SLRGPSYLSVHLRFGTISIRTLARAALDAVL-RGGSESAGAAVWLSELIWRDFYFMILHH 320

Query: 298 YPSVCMGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +P V  GK F P  + ++W          QAW    TG+P++DAAM Q+   G+MHNRLR
Sbjct: 321 HPRVADGKSFRPEYDALQWVDSVTGDKYFQAWCDAQTGYPLVDAAMLQIRQSGYMHNRLR 380

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+TASFLVKDL VDWR GE+YF  QL D D ++NNGGWQWAASTG D+ PYFRIFNP  Q
Sbjct: 381 MVTASFLVKDLGVDWRRGEQYFADQLNDFDFSANNGGWQWAASTGCDAQPYFRIFNPVKQ 440

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
            ++FDPQG FIR +LP L  +P QYIHAP +            L  NYP PIV H+ A  
Sbjct: 441 SEKFDPQGRFIRKYLPVLAQMPDQYIHAPWTAPVNVLATAGVKLGENYPPPIVQHEVARK 500

Query: 469 HTLNQYYAAKKQ 480
            TL +Y A +K 
Sbjct: 501 QTLERYAAIRKS 512


>gi|254514439|ref|ZP_05126500.1| DNA photolyase [gamma proteobacterium NOR5-3]
 gi|219676682|gb|EED33047.1| DNA photolyase [gamma proteobacterium NOR5-3]
          Length = 482

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 156/479 (32%), Positives = 236/479 (49%), Gaps = 16/479 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLRI D  AL AA  +   KV+ ++I   +             +++ SL  +
Sbjct: 4   TVVLWFRQDLRINDLPALQAATRDGQ-KVLPIYILDEDAPGDWSPGGASRWWLHHSLTAL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + +   G    + +       +  L   C       ++ +R+YE    + ++ L K L 
Sbjct: 63  AQDIDHLGGTLIFRKGKT----LSILRDVCEASGARAIYCSRRYEPWAGQEEQTLYKALD 118

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  K F  S+L  PGS+L      +KV+TPF +A  +N V        V        
Sbjct: 119 SDNISFKRFPGSLLHEPGSVLTQGGGPFKVFTPFWRACRRNEVPQPAEKPSVAWAEGIQS 178

Query: 188 VTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            T          P  A   +  +  GE  A   L  F  + V  Y ++RD+P++  TS++
Sbjct: 179 DTLDAWKLLPRDPDWAASWNEFWQPGENGAQARLHAFLDDTVSRYADERDLPSVDATSRM 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G +SPRQ W   +++ ++      +    +  EL WREF  HL+ F+P +    
Sbjct: 239 SAHLHHGEISPRQIWAMCEQKKLE-QPHSDTAINKFQAELGWREFSYHLLHFFPHLPET- 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF        W  +   LQAW++G TG+PI+DA MR+L   G MHNR+RM+ ASFL K L
Sbjct: 297 PFKENFSGFPWQANETYLQAWQRGQTGYPIVDAGMRELWATGIMHNRVRMVVASFLCKHL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L  WR GE++F   L+D DLASN   WQW A +G D+ PYFRIFNP  QG++FD QG ++
Sbjct: 357 LQHWRCGEDWFWDTLVDADLASNGCSWQWVAGSGADAAPYFRIFNPVTQGEKFDKQGDYV 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PE+  +  +Y+H P     +        L  +YP PIVDH++A    L+ Y   +
Sbjct: 417 RRWVPEIAALSNKYLHKPWEAPAEVLSQAGVTLGADYPEPIVDHREARQAALDAYEHIR 475


>gi|71909505|ref|YP_287092.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
           RCB]
 gi|71849126|gb|AAZ48622.1| deoxyribodipyrimidine photo-lyase type I [Dechloromonas aromatica
           RCB]
          Length = 470

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/483 (35%), Positives = 249/483 (51%), Gaps = 29/483 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQV 68
            LVW R DLR  D+ A  +A      +V   F+   E          R+ HFI  SL+++
Sbjct: 6   ALVWFRRDLRDHDHAA-LSAALAEAQQVYCAFVFDSEILDPLPTRHDRRVHFIRESLVEL 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L  +G             +++ + +   +  V+ +F NR YE +  RRD  + ++L+
Sbjct: 65  DAALRARGGGLIIRHG----QAVDEIPALARRLGVSAVFTNRDYEPSAKRRDAQVARQLR 120

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  +      D  +     +L  A + + V+TP++ A ++ L  AD  + P         
Sbjct: 121 NDDIAFHGVKDQAIFDGDEVLTQAGKAFSVFTPYKNAWLKRLTTADYAAWPCDGRLAGQE 180

Query: 188 VTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    IP   +  F   D        G   A  +   F ++++  Y   RD PA++G S 
Sbjct: 181 LA--GIPTLEEIGFTPTDLAELGIQPGMSGAKGLWDDFSRDRIERYGSLRDFPAVKGVSY 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS +L  G +S RQ   +      D          +WL+ELIWR+FY  ++  +P V  G
Sbjct: 239 LSVHLRFGTISIRQLVRQALAHQAD----------TWLSELIWRDFYFMILDHFPHVA-G 287

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F P  + I+W        AW +G TG+P++DAAMRQLN  GWMHNRLRM+ ASFL KD
Sbjct: 288 HAFKPEYDAIQWASRPEAFAAWCEGCTGYPLVDAAMRQLNFSGWMHNRLRMVVASFLTKD 347

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR+GE+YF  QL D DL++NNGGWQWA+S+G D+ PYFRIFNP  Q ++FD +G F
Sbjct: 348 LGIDWRLGEKYFAEQLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVTQSEKFDAEGKF 407

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR ++PEL  V  +YIHAP              +  +YP PIVDH  A   TL +Y   K
Sbjct: 408 IRRYVPELAKVHDKYIHAPWKMGRIEQEALGVVIGRDYPSPIVDHATARDETLARYAVVK 467

Query: 479 KQS 481
           KQ+
Sbjct: 468 KQA 470


>gi|257095136|ref|YP_003168777.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047660|gb|ACV36848.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 482

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 176/490 (35%), Positives = 246/490 (50%), Gaps = 23/490 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASL 65
           M   LVW R DLR +D+ AL  A      +V   F+   E        + R+  FI  SL
Sbjct: 1   MDSILVWFRRDLRDSDHAALCEALRRG-RRVFCAFVFDREILDALDHEADRRVEFIRESL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +++  +L  +G             +   +        V  +F NR YE    +RD  +  
Sbjct: 60  VELDAALRTRGGALLVRHG----WATREIPDLARGLGVAAVFVNRDYEPGAKQRDAAVSA 115

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   I  +SF D  +L    +L+ A + Y V+TP+R A ++ L   D       +  L
Sbjct: 116 ALKADGIAFESFKDQAILDGDEVLSQAGRPYTVFTPYRNAWLKRLTDDDWYPHQAGSGVL 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                   +P      F   D        G +    +L  F   ++  Y +QRD PA++G
Sbjct: 176 AATPAADGVPPLAKIGFSGTDLRRLGIVPGMRGGRQLLADFL-GRIGRYRQQRDFPAVKG 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LS +L  G +S R      K        +   GA +WL+EL+WR+FY  ++  +P V
Sbjct: 235 VSYLSVHLRFGTVSVRDLV--AKAIAAGAFREGGEGAATWLSELVWRDFYFMILDRFPHV 292

Query: 302 CMGKPFIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            + + F P  + I W    +      AW  G TG+P++DAAMRQLN+ G+MHNRLRM+ A
Sbjct: 293 -VERAFKPAYDLINWQAGAQAEDAFSAWCAGRTGYPLVDAAMRQLNSSGYMHNRLRMLVA 351

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDL +DWR+GE YF  QL D DL++NNGGWQWAASTG D+ PYFRIFNP  Q +RF
Sbjct: 352 SFLTKDLGIDWRLGERYFARQLNDYDLSANNGGWQWAASTGCDAQPYFRIFNPVTQSERF 411

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           DP G FIR +LPEL NVP ++IHAP              +    P P+VDH +A   TL 
Sbjct: 412 DPAGKFIRRYLPELANVPDRFIHAPWRMSSVEQSACGVLIGRTTPAPLVDHDQARQRTLE 471

Query: 473 QYYAAKKQSL 482
           +Y   K  ++
Sbjct: 472 RYAIVKSPAV 481


>gi|156039880|ref|XP_001587047.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980]
 gi|154696133|gb|EDN95871.1| hypothetical protein SS1G_12076 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 595

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 165/480 (34%), Positives = 248/480 (51%), Gaps = 21/480 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A    + W + DLR  DN AL+ A   +      ++A++I +P+ +  H  +  +  FI 
Sbjct: 107 AKDCVVHWFKCDLRTRDNTALWMASEKAKEKGVPLVAMYIISPQDFEAHLTAPVRVDFIL 166

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L  +++ L++  +                +     +   + L+ N +YE++E+RR+  
Sbjct: 167 RTLEILKRDLAELDVPLYVETVEKRKGVEGRILELLGEWGASHLYANMEYEVDELRREAR 226

Query: 123 LEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-------- 173
           + +    R I      D+ ++ PG + +   + Y VYTP+ KA I ++ +          
Sbjct: 227 MVRDCAERGIAMDVLHDTCVVRPGELRSGQGKQYSVYTPWFKAWIAHVHENSDLLDLFDA 286

Query: 174 LRSLPVPAIRLTGPVTPSNIP------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
               P  A      +  + IP         D   +    M+P GE  A   L KF  EK+
Sbjct: 287 PGKNPASAREKFAKLFETKIPDAPANKSLTDEEKKRFHSMWPAGEHAAQERLSKFADEKI 346

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELI 286
             Y E R+ P +  TS LS + + G LS R      ++      L     G  +W++E+ 
Sbjct: 347 NKYEEHRNFPNLNSTSSLSVHFASGTLSARTAIRTARDHNNTKKLNAGYQGIQTWISEVA 406

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR+FY+H++  +P VCM KPF P    I W  ++   QAW +G TG+PI+DAAMRQL   
Sbjct: 407 WRDFYKHVLVHWPYVCMNKPFKPEYTNITWEYNNTHFQAWTEGKTGYPIVDAAMRQLKHC 466

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNR RMI  SFL K LL+DWR+GE +FM  L+DGD ASNNGGW + ASTG D  PYF
Sbjct: 467 GYMHNRCRMIVGSFLAKHLLIDWRMGERFFMEHLIDGDFASNNGGWGFCASTGVDPQPYF 526

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL--NYPLPIVDHK 464
           RIFNP +Q ++FD +G FIR W+PEL +V  ++IH P        ++    YP  IV+HK
Sbjct: 527 RIFNPLLQSEKFDAEGEFIRKWVPELKSVKGKFIHEPFGDKVAAGVARKNGYPERIVEHK 586


>gi|332993097|gb|AEF03152.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2]
          Length = 474

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 166/487 (34%), Positives = 245/487 (50%), Gaps = 32/487 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ DN AL AAC   + K+I ++I          +    + +++ SL  +   
Sbjct: 1   MWFRQDLRVKDNPALNAAC--DEGKIIPIYIYDDNATDGRALGGASNWWLHHSLNSLNDR 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQHR 130
           L+    VF+        D    + +         +++NR YE  ++ RDK ++K  L + 
Sbjct: 59  LNGHLKVFK-------GDPKALIPALMEAYEAKGIYWNRCYEPWQINRDKAIKKQLLDND 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-------- 182
               S + S+L  P  +L      Y+V+TP+ +    N+        P   I        
Sbjct: 112 YEAHSSNGSLLWEPMKVLKKDGTPYRVFTPYYRKGCLNVEPPRYPQAPPARITYADVDDS 171

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           ++T      NI      P    D      +  GE  A   L+ F +     Y + RDIP+
Sbjct: 172 KITKANHSCNIDDLNLLPSLGWDSDFKNHWKPGEDGAADNLQYFIQHAARKYKDARDIPS 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS LSP+L  G +SP Q W  +K+ F            ++L+EL WREF  +L+  +
Sbjct: 232 MNGTSHLSPHLHFGEVSPNQVWYAIKDRFE---TSEDKSIDTYLSELGWREFSYYLLYHF 288

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P++   K F    +K  W  D+  L+AW+ G TG PI+DA MR+L   G+MHNR+RMI  
Sbjct: 289 PTIPT-KNFNDKFDKFNWRSDAKSLKAWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVG 347

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVK+LL+ W+ GE +F   L+D DLASN  GWQW A TG D+ PYFRIFNP +QG++F
Sbjct: 348 SFLVKNLLISWQEGERWFWDCLVDADLASNTAGWQWVAGTGADAAPYFRIFNPLLQGEKF 407

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472
           D QG ++R + PEL ++P +YIH P              L   YP PIVD K +    L+
Sbjct: 408 DKQGKYVRKYCPELADLPDKYIHKPWDAPPVIAKDAGVHLGDTYPKPIVDLKASRQRALD 467

Query: 473 QYYAAKK 479
            + A K+
Sbjct: 468 AFQALKE 474


>gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 482

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 160/482 (33%), Positives = 247/482 (51%), Gaps = 19/482 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W RNDLR+ D+ AL AA H   A ++ ++I      +Q  +      ++  SL  +  
Sbjct: 7   VLWFRNDLRLGDHAALVAAVHTG-APILPLYILDDASPKQWKMGGASHWWLDKSLAALAG 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L+ +G      +  +  + +  ++    +     +++ R YE   V  ++ L+ +L   
Sbjct: 66  DLASRGGPLVLRRGDSETELLRMIE----ETGAAAVYFTRSYEPWAVALEQRLKTKLDDA 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V C+ F   +L  P  +       YKVYTPF +A++++LV A     P     L     
Sbjct: 122 NVACRRFGGRLLREPEDMRTSNGGFYKVYTPFSRAIMKDLVPAKSVRAPERIATLEKQPK 181

Query: 190 PSNIPRFFDYP-----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              +  +  +P      +     +  GE  A   L  F +  +  Y   R+ PA  GTS+
Sbjct: 182 SERLRDWALHPQKPDWSKGFAAAWQPGEAGARKRLSDFVRTALKSYARDRNCPATPGTSR 241

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L+ G +SP  CW+              + A ++L EL+WREF   L+  +P +   
Sbjct: 242 LSPHLAFGEISPAACWHAAAHAGGKTNGSDNA-AETFLKELLWREFSAGLLFHFPELPE- 299

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +PF P      W+ ++  L+AW+ G TG+PI+DA MR+L   G+MHNR+RMITASFL+K 
Sbjct: 300 EPFRPEFSAFPWHGNAKHLKAWQTGQTGYPIVDAGMRELWATGYMHNRVRMITASFLIKH 359

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W+ GE +F   L+D DLA+N+  WQW A +G D+ PYFRIFNP +QG++FDP G +
Sbjct: 360 LLIPWQTGEAWFWDTLVDADLANNSANWQWVAGSGADAAPYFRIFNPVLQGEKFDPDGDY 419

Query: 425 IRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R W+PEL  +P Q IHAP              L  +YP PIV+H +A    L  Y   K
Sbjct: 420 VRRWVPELAKLPRQIIHAPWKADSGTLMEAGVKLGKSYPNPIVEHGEARARALAGYEHIK 479

Query: 479 KQ 480
             
Sbjct: 480 NS 481


>gi|116871975|ref|YP_848756.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740853|emb|CAK19973.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 470

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 171/481 (35%), Positives = 252/481 (52%), Gaps = 26/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLRI DNKALY A   +D  +I +F   PEQ+      +      ++S+   
Sbjct: 2   TSVMWFRRDLRINDNKALYHASKEND--LILLFQVNPEQFIS---GSPSHQAFFSSVANF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRRDKLLEKRL 127
           +K + +       H    F + IE L           K+F+N+       +RDK      
Sbjct: 57  KKEIDKN-----AHLQIMFGEPIELLKRLKDAIPAWDKVFFNQDETGYGAKRDKAARAFF 111

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + +   ++ D+ L     +   + + YK++TP+ K   + + +   +S+  P   +  
Sbjct: 112 EYNNITVHAYHDAYLHSAEEVKKTSTEYYKIFTPYYKKWREEIKETPFKSVLTPENIIKK 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P +  +F        +    + GE+ A   L+ F K  +  Y + RDIP    TS L
Sbjct: 172 ELFPHDEEQFEKLIQDLPELDLKVLGEEAANTRLKNFIKRDLAEYAKARDIPDSDQTSHL 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL  G +S R  W  L++       KP  G   +  EL WR+FY  +   +P+    +
Sbjct: 232 SRYLRTGEISIRTVWQALQQ------TKPTEGRAIFEKELCWRDFYNMIYVSFPNQ-KNE 284

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P       IEW  +    + W++G TG+P++DAAMRQL   GWMHNRLRMITASFL KDL
Sbjct: 285 PIQENYRFIEWENNREFFKQWQEGKTGYPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 344

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YF   L+D D ASN  GWQWAASTG D+VPYFRIFNPT Q ++FDP G FI
Sbjct: 345 LIDWRYGEKYFQQMLIDYDPASNISGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGKFI 404

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R ++ EL+N+P ++IH P    +         L  +YPLPIVDHK+     +++Y  +K+
Sbjct: 405 RKYVEELSNLPDKFIHQPEKMSESQQKEHNLILGDDYPLPIVDHKERRKLAISRYEFSKE 464

Query: 480 Q 480
           Q
Sbjct: 465 Q 465


>gi|313610351|gb|EFR85579.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes FSL
           F2-208]
          Length = 467

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 170/481 (35%), Positives = 244/481 (50%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+      +      + S+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYNACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFTSVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR        RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAERDEAAQAFF 111

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + ++  +SF DS L     +     + YK++TP+ K   + + +   +    P      
Sbjct: 112 DEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  +  Y + RD P +  TS LS
Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISIRTIWQALQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGEFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMTETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|296159661|ref|ZP_06842484.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. Ch1-1]
 gi|295890105|gb|EFG69900.1| Deoxyribodipyrimidine photo-lyase [Burkholderia sp. Ch1-1]
          Length = 499

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 173/494 (35%), Positives = 252/494 (51%), Gaps = 37/494 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGIS----ARQ 57
             LVWLR DLR TDN ALY A  + + +V  VF+            W           R+
Sbjct: 13  TGLVWLRRDLRNTDNAALYYALKHCE-RVWCVFVFDTTILQPLVDAWHARHPDTQPQDRR 71

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI A+L ++ ++L   G          + +  + + +   +     +F N  YE   +
Sbjct: 72  IEFILAALGELDEALRTDGGGLIVL----YGNPADLVPTLADELGADAVFANHDYEPVAI 127

Query: 118 RRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ + ++L        +F D V+     +L    + + V+TP+R A ++ L   DL+ 
Sbjct: 128 ERDETVREQLAEAGRQWLTFKDQVIFERDEVLTGQSKPFTVFTPYRNAWLRQLSTFDLKP 187

Query: 177 LPVPAIRLTGPVTPS----NIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYY 229
            PV          PS     +P      F   +      P G   A  +L  F   ++  
Sbjct: 188 YPVETYAKHLAALPSRLDRQLPTLEQLGFAPSNLGELSLPTGMSGAQRLLDDFMT-RIDS 246

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y ++RD PA +G S LS +L  G +S R       E  +        G+ +WL+ELIWR+
Sbjct: 247 YADRRDFPAAKGPSYLSIHLRFGTVSIRTLARLAHELSLQ---PDGQGSATWLSELIWRD 303

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTI 346
           FY  ++A +P +  G  F    +++ W +         AW  G TG+P++DAAM QLN  
Sbjct: 304 FYFMILAHHPRLARGASFKEEYDRLRWEQGPEADEAFAAWCDGRTGYPLVDAAMLQLNRT 363

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+TASFLVKDL VDWR+GE YF  QL D D ++NNGGWQWAASTG D+ PYF
Sbjct: 364 GYMHNRLRMVTASFLVKDLGVDWRLGERYFAEQLNDFDFSANNGGWQWAASTGCDAQPYF 423

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           RIFNP  Q ++FD +G FI+ +LP+L  +P+++IHAP     +        L  +YP PI
Sbjct: 424 RIFNPVTQSEKFDAEGRFIKRYLPQLAKLPSKWIHAPWLAGAERLAECGVVLGKDYPAPI 483

Query: 461 VDHKKACHHTLNQY 474
           VDH +A   TL ++
Sbjct: 484 VDHAEARARTLARF 497


>gi|304321394|ref|YP_003855037.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
           HTCC2503]
 gi|303300296|gb|ADM09895.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
           HTCC2503]
          Length = 478

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 162/485 (33%), Positives = 245/485 (50%), Gaps = 25/485 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++WLR DLR  DN A+  A   S A V+ +++          + A Q  +++ SL   
Sbjct: 4   PVILWLREDLRFDDNPAMREAAA-SGAPVLCLYVLDDATAGDFAMGAAQRWWLHHSLCAF 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L  +G      +        E + +   + + + +F+NR+Y   +   D  ++  LQ
Sbjct: 63  KEDLETRGGALILRRGKE----TEIVPALAKEIKASHVFWNRRYMKWQTDPDTEIKSALQ 118

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S +  +L  P  I   +   YKVYTP+ K+L Q       R+      +L  P
Sbjct: 119 DMGIKGISCNGRLLYEPWEIETKSGDPYKVYTPYWKSLQQK---EGPRAALPRTDKLNAP 175

Query: 188 VTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +  +  R  D+          +  +P++  GE+ A   LR +       Y + R+ P  
Sbjct: 176 PSLPSTDRLDDWNLLPRSPNWAEGFEPVWTPGEKGARARLRAWLDTDAASYDDCRNRPDQ 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LSP+L  G +SP   W+ + +   +    PK    S+L+E+ WREF   L+ ++P
Sbjct: 236 DRTSRLSPHLHFGEISPVVLWHSVSDAM-EAGDIPKDQGTSFLSEIAWREFSYQLLYYHP 294

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P +      EW+ D   L AW++G TG+PI+DA MRQL T GWMHNR+RMI  S
Sbjct: 295 -TMRDQPLMEKFTDFEWDTDKKALNAWQRGRTGYPIVDAGMRQLWTEGWMHNRVRMIVGS 353

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVKDLL+DWR G  +F   L+D D A+N   WQW A  G D+ P+FRIFNPT Q ++FD
Sbjct: 354 FLVKDLLLDWRDGMRWFWDCLVDADPANNTASWQWIAGCGADAAPFFRIFNPTTQSEKFD 413

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQ 473
           P G +IR ++PEL ++PT++IH P              L   YP PIVDH       L++
Sbjct: 414 PDGAYIRRYVPELRDLPTRFIHEPRKASTAILKDAGIVLGETYPDPIVDHSDRRKQALSR 473

Query: 474 YYAAK 478
           Y A K
Sbjct: 474 YEAIK 478


>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
 gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
          Length = 491

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 172/490 (35%), Positives = 240/490 (48%), Gaps = 28/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ DN AL  A   S  +VI +FI              +  F+ A+L  +  
Sbjct: 4   IHWFRRDLRLRDNPALSGAAARSGGRVIPLFILDDAILHAPRTGMARVAFMIAALRDLDA 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
           SL  +G      +    D     L           + +NR Y     +RD+ +E  L+  
Sbjct: 64  SLRARGSRLVVRRGRPSD----VLRDLVGATGAVGVSWNRDYTPFARQRDQHIEAMLRDL 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI---QNLVQADLRSLPVPAIR-LT 185
            V      D+V++ P  +     + Y VYTP+R+      +      LR+   P ++ + 
Sbjct: 120 NVATFIAADAVIMEPDDVRTDDGRPYTVYTPYRRRWRALVEQRRDDVLRAYEPPVLQPVP 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK----VYYYVEQRDIPAIQG 241
             V    IP   D     I  +   GE      L  F   +    +  Y + R++ A   
Sbjct: 180 DGVADLPIPDNPDLDVSVIQRIPAGGETTGAARLAAFLDPRATHGIAGYADGRNLLAEPA 239

Query: 242 TSQLSPYLSIGVLSPRQCW--------NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           TS+LSPYL  G ++PR              +E+  +          +W+ EL WR+FY  
Sbjct: 240 TSRLSPYLRFGCVAPRAALRAALNLLDRAGEEQDAECAATLTRSIETWIGELAWRDFYYQ 299

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++  +P V     F P  + +EW  D  L  AWK+G TG+P++DAAMRQLN   WMHNR 
Sbjct: 300 ILWHHPHVLRS-AFKPQYDALEWENDPALFDAWKEGRTGYPVVDAAMRQLNREAWMHNRA 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL KDLL+DWR GE YFM QL+DGD A+NNGGWQW+A TG D+ PYFRIFNP  
Sbjct: 359 RMIVASFLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVS 418

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467
           QG+ FDP+G ++R +LPEL  VP +YIHAP +            +  +YP P+VDH +  
Sbjct: 419 QGQTFDPKGAYVRRYLPELEAVPDRYIHAPWTMPYAEQQRCGVIIGRDYPAPVVDHAERR 478

Query: 468 HHTLNQYYAA 477
              L  Y A 
Sbjct: 479 ARALALYRAV 488


>gi|120609600|ref|YP_969278.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli
           AAC00-1]
 gi|120588064|gb|ABM31504.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax citrulli
           AAC00-1]
          Length = 493

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 176/491 (35%), Positives = 247/491 (50%), Gaps = 23/491 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  LVW R DLR  D+ ALY A      +V  VF+           + R+  FI  SL+Q
Sbjct: 6   SKGLVWFRRDLRSDDHAALYHALRQC-GQVHCVFVFDTAILDPLPRADRRVEFIRESLVQ 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL                 + E + +   +  V  +F N   E   + RD  + +RL
Sbjct: 65  LDASLRALSGHRHGGLIVRHGVAAEEVPALAARLGVQAVFANHDDEPVALERDDRVRRRL 124

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               +   ++ D  +     +L      Y V+TP++ A ++ +    L + PV       
Sbjct: 125 GTGGVQMLTYKDHAIFERAEVLTQGGTPYTVFTPYKNAWLRKVDAFYLSAYPVERHAGRL 184

Query: 187 PVTPSN----IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              P      +P   D  F+         P G   A  +L  F + ++  Y E RD PA+
Sbjct: 185 APRPEGERGGVPALADIGFEPAGLDRLPLPPGMDGARALLDDFLQ-RIDQYGEARDFPAV 243

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +G S LS +L  G LSPR+      E          +GA +WLNELIWR+FY  ++A +P
Sbjct: 244 KGPSYLSVHLRFGTLSPRRAARAAHERMRQ----GSTGAATWLNELIWRDFYFQVLAHHP 299

Query: 300 SVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            V  G  F P  + I W           AW +G TG+P++DAAM Q+N  G+MHNRLRM+
Sbjct: 300 QVAGGASFKPAYDAIAWEDGPQARERFAAWCEGRTGYPLVDAAMAQINRTGYMHNRLRMV 359

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFLVKDL VDWR GE YF  +L D DL++NNGGWQWA+S+G D+ PYFRIFNP  Q +
Sbjct: 360 VASFLVKDLGVDWRWGERYFAEKLNDFDLSANNGGWQWASSSGCDAQPYFRIFNPVSQSR 419

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHT 470
           +FDP+G FIR +LP+L  +P +++HAP              L  NYP P+VDH +A   T
Sbjct: 420 KFDPKGRFIRLYLPQLAALPDRWLHAPWEAGPLELEAAGVRLGDNYPHPVVDHDEARQRT 479

Query: 471 LNQYYAAKKQS 481
           L +Y   K ++
Sbjct: 480 LARYAVVKSEA 490


>gi|299534052|ref|ZP_07047404.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
 gi|298717961|gb|EFI58966.1| deoxyribodipyrimidine photo-lyase [Comamonas testosteroni S44]
          Length = 490

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 175/493 (35%), Positives = 256/493 (51%), Gaps = 23/493 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR DLR+ DN ALY A    + K+  VF+           + R+  FI  SL ++
Sbjct: 1   MGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILATLPHADRRVEFICQSLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +     Q    +      + + +   Q     +F N   E   + RD  + + L+
Sbjct: 60  DAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDAQVARSLK 119

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            +  +   F D  +     +L  +L  + V+TP++ A ++ +    L + P      +  
Sbjct: 120 SQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERDLASKL 179

Query: 188 VTPSN-----IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               +     IP   D  F          P G   A  +L  F   ++  Y   RD PA+
Sbjct: 180 ADLPDSERRPIPTAADLGFAPDTLAGLRLPTGVSGARQLLADFLP-RLPQYKTARDFPAL 238

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           +G S LS +L  G +S R+      E     D     + GA +WL+ELIWR+FY  ++A 
Sbjct: 239 KGPSYLSVHLRFGTVSIRELARLAHEAAHNEDWSAAAREGAATWLSELIWRDFYFQILAH 298

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P V + + F P  + IEW   +    L  AW +G TG+P++DAAMRQLN+ G+MHNRLR
Sbjct: 299 QPYV-VERSFKPAYDAIEWETGAEADPLFAAWCEGRTGYPLVDAAMRQLNSSGYMHNRLR 357

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+TASFLVKDL +DWR GE YF  +L D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q
Sbjct: 358 MVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQ 417

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKND----LSLNYPLPIVDHKKACH 468
            ++FDP G FI  ++PE+  +P++  HAP     L+  +    L  +YPLP+VDH  A  
Sbjct: 418 SEKFDPDGKFIARYVPEVAQLPSKLRHAPWLAKPLELAEAGIALGRDYPLPVVDHAAARE 477

Query: 469 HTLNQYYAAKKQS 481
            TL +Y   KK++
Sbjct: 478 KTLARYGILKKEA 490


>gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
 gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
          Length = 474

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 167/476 (35%), Positives = 244/476 (51%), Gaps = 16/476 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA     ++V+ VF   P       I+  +  ++   L  +Q+
Sbjct: 6   LFWHRRDLRISDNWGL-AAARRVTSQVVGVFCLDPAILSGDDIAPVRVAYMIGCLQCLQR 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      Q    D+  + L    +      +++N+  E    +RD+ +E+ L   
Sbjct: 65  DYQRGGSQLLIIQ----DNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-----RSLPVPAIRL 184
            I  ++F D VL  P +I   + + YKVYTP+ +  IQ            R L     + 
Sbjct: 121 GIKVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQPKPEPCDTLKSRGLTEAQEKA 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                   +P   D  F   +P +   GE  A   L+ FC   +Y Y + R+ PAI GTS
Sbjct: 181 AREAGAIALPTAKDLGFIWSEPFILEPGETAASDRLQLFCDRAIYEYDQGRNFPAIDGTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
            LSP L  G +  R  W + +E        + +    +W  E+ WREFY+  +  +P++ 
Sbjct: 241 LLSPALRFGAIGIRTLWQKTQEIMALTRSDEARDHIQTWQQEIAWREFYQQALYHFPALA 300

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G  F    ++  W+ +    QAW QG TG+PI+DAAMRQLN  GWMHNR RMI ASFL 
Sbjct: 301 TG-AFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT 359

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL+++W+ GE+YFM +L+DGDLASNNGGWQW++S+G D  P  RIFNP  Q +++DP+ 
Sbjct: 360 KDLIINWQWGEKYFMQRLIDGDLASNNGGWQWSSSSGMDPKP-LRIFNPASQAQKYDPEA 418

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +IR WLPEL N+ T ++         +  +  YP PIVDH +      + Y   K
Sbjct: 419 EYIRQWLPELRNLETAHLVT-GKISSSDRQACGYPQPIVDHNQQQKLFKSIYSQLK 473


>gi|288958781|ref|YP_003449122.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
 gi|288911089|dbj|BAI72578.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
          Length = 504

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 167/499 (33%), Positives = 249/499 (49%), Gaps = 28/499 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQ 57
           M    A  + +VW RNDLR+ DN AL AA   +  +   VI ++I   E      +   Q
Sbjct: 12  MSTAIAPPI-IVWFRNDLRLADNPALTAAAQMAGERGGAVIPLYILEEETGDPWTLGGAQ 70

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             +++ SL ++    ++ G      +     +    LD+   +     + +NR+Y   + 
Sbjct: 71  RWWLHGSLERLATCCARHGSPLVLRRG----EPAAVLDALIAETGAGCVLWNRRYAPAQT 126

Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD  +++ L+ R I  +SF+  +L  P ++ N +   +KV+TPF + L   L       
Sbjct: 127 ARDAAIKQGLKARGIDARSFNAGLLAEPWTVRNKSGGSFKVFTPFWRHLSATLTPPPPTR 186

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--------IGEQNALHILRKFCKEKVY 228
                  L  P T         +      P +          GE  AL  L  F    V 
Sbjct: 187 A---PAALKAPATAPAGDALEGWGLPPTAPDWAAGLRKRWVPGETAALSHLADFLDGPVG 243

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y  +RD P   GTS LSP+L+ G + PRQ W+  +        +  +G   +L E+ WR
Sbjct: 244 VYATERDRPDRHGTSTLSPHLAFGEIGPRQVWHAARHAAE-ARPELAAGIDFFLREVGWR 302

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF  HL+   P +   +P  P      W +D+  LQAW++G TG+PI+DA MRQL   GW
Sbjct: 303 EFQYHLLHHAPELPE-RPLDPRFADFPWREDAAGLQAWRRGRTGYPIVDAGMRQLWETGW 361

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RMI ASFLVKDLL+ W+ GE +F   L+D DLA N G WQW A  G D+ P+FR+
Sbjct: 362 MHNRVRMIVASFLVKDLLLPWQEGERWFWDTLVDADLAQNAGNWQWVAGCGADAAPFFRV 421

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVD 462
           FNP +QG++FDP G ++R ++PEL+ +P ++IH P +   +        L  +YP PI+D
Sbjct: 422 FNPVLQGEKFDPDGDYVRRYVPELDRLPPRWIHQPWTAPTEILRQAGIRLGADYPRPILD 481

Query: 463 HKKACHHTLNQYYAAKKQS 481
           H  A    L  Y   K ++
Sbjct: 482 HGAARDRALALYNERKAKA 500


>gi|300864867|ref|ZP_07109715.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
 gi|300337160|emb|CBN54865.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
          Length = 482

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 165/482 (34%), Positives = 237/482 (49%), Gaps = 22/482 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA H S  KV+ +F       ++  ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNIGLAAARHLSQ-KVVGIFCLDFNILQRDDVAPARVAYMIGCLQELQR 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      Q     +  + +    +  +   +F+N   E     RD  +   L+  
Sbjct: 65  RYLEAGSQLLILQA----EPTQGIPKLAIALQAKAVFWNLDVEPYSRERDDAVSNALKQA 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  ++F D +L  P  I       Y VYTPF K  +       + +LP+ ++     +T
Sbjct: 121 GIKVENFWDQLLHAPDEIRTGMGTKYTVYTPFWKNWVSKPKAEPVDTLPIMSLEQLTGLT 180

Query: 190 PSN-----------IPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                         +P   +  F    P+    GE  A   L  FC   +Y Y +QR+ P
Sbjct: 181 AKEQEIAKLSGTIRLPSAKELGFVWNAPLIIEPGEDGAQEKLDDFCDRAIYDYDKQRNFP 240

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMA 296
           A+ GTSQLS  L  G +  R  W            +       +W  EL WREFY+H M 
Sbjct: 241 ALDGTSQLSAALKFGAIGIRTVWQATVTVMEKCHTEAARINIQTWQQELAWREFYQHAMY 300

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P +  G  +    +   W+ +  L QAW +G TG+PIIDAAMRQ+N  GWMHNR RMI
Sbjct: 301 NFPELANG-AYREAFKDFPWDNNQELFQAWCEGKTGYPIIDAAMRQMNQTGWMHNRCRMI 359

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDL+++W+ GE+YFM  L+DGDL++NNGGWQW+AS+G D  P  RIFNP  QG+
Sbjct: 360 VASFLTKDLIINWQWGEKYFMQNLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPFTQGQ 418

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FDP+  +IR W+PEL  + T  + A          S+ YP PIVDH +        Y  
Sbjct: 419 KFDPKSEYIRKWVPELRWIDTASLLA-GKITPIERRSIGYPEPIVDHNQQQRRFKELYKQ 477

Query: 477 AK 478
            K
Sbjct: 478 QK 479


>gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
 gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
          Length = 477

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 170/480 (35%), Positives = 243/480 (50%), Gaps = 17/480 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN AL  A   S AKV+ +F   P    +  ++  +  ++ A L ++ +
Sbjct: 6   LHWHRRDLRLQDNVALAEARQQS-AKVVGIFCLDPAILEKEDVAPARVKYLLACLAELAE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G      Q     + +E L       +V  +++N   E    +RD  +   L+  
Sbjct: 65  NYQKAGSQLLIFQG----NPLEVLPKVAESLKVHTVYWNLDVEPYAQQRDHQMAIALRQV 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------AIR 183
               ++F D +L  PG +   + + Y VY+PF K   Q    A + +L           +
Sbjct: 121 GAKIETFWDQLLHAPGKVFTQSKKPYSVYSPFWKNWSQKSKAAPVTALRDCQGLSDAEQK 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           L   +    +P   D  F    P   P+GE  +L  L +F +  +  Y   R+ PA  GT
Sbjct: 181 LAKDLGAIALPTLADLGFSWDKPFTVPVGETASLGQLDRFTENFIEKYDGDRNFPATDGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPSV 301
           S+LS  L  G +  R  W   +        K  ++G  +W  EL WREFY+H + F+P +
Sbjct: 241 SRLSAALKFGAIGIRTVWQATETALNHCRSKEAEAGVITWQQELAWREFYQHCLFFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G P+    +   W  D    QAW  G TG+PIIDAAMRQLN  GWMHNR RMI ASFL
Sbjct: 301 AQG-PYREEFKDFPWENDEEKFQAWCAGQTGYPIIDAAMRQLNETGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL++DWR GE+YFM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++FDP+
Sbjct: 360 TKDLIIDWRWGEKYFMQTLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQAQKFDPE 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
             +IRHWLPEL+ + TQ +              +YP PIV+H+         Y   K ++
Sbjct: 419 ADYIRHWLPELSGLDTQVLLTGQIPRLLCQ-QHDYPEPIVEHRVRQREFKRLYKLVKDKA 477


>gi|254504495|ref|ZP_05116646.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
           DFL-11]
 gi|222440566|gb|EEE47245.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
           DFL-11]
          Length = 478

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/484 (33%), Positives = 247/484 (51%), Gaps = 28/484 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-TPEQWR-QHGISARQSHFIYASLL 66
             +VW R DLR++DN AL+ A       V+ V+I  TP+Q   +H +      +++ SL 
Sbjct: 2   TTIVWFRQDLRVSDNPALHEATRRG--PVLPVYILETPDQSGDEHPLGGASRWWLHHSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++ L   G+VF      +       +     +     +++NR YE + + RD  L++ 
Sbjct: 60  ALKEDLP--GLVFLRGSARH------LIPELVQETGADAVYWNRCYEPHAIERDSALKES 111

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   +  KSF  S+L  P  +       YKVY+PF KA  +  V   L +     I  T
Sbjct: 112 LKTDLIDAKSFKASLLFEPWDVETKTGGPYKVYSPFWKAAQKISVPDPLPAP--AEINFT 169

Query: 186 GPVTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                 N+      P      +  + ++  G   A   L +F    +  Y ++R+ P + 
Sbjct: 170 AYDRGDNLSDLELLPTKPNWAEGWEDIWQPGAAGAKDRLIEFLDHGLSGYGDKRNRPDLP 229

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LSP+L  G +SP+Q W+   +          S    +L+E+ WREF  HL+  YP 
Sbjct: 230 NVSRLSPHLHFGDISPKQVWSA-TQHATARKSSLSSDGHKFLSEIAWREFSYHLLYHYPQ 288

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +   K + P  +   W +    L+ W+ G TG+P++DA MR+L   G+MHNR+RM+  SF
Sbjct: 289 LPE-KNWRPAFDAYPWRESEEDLKKWQTGLTGYPMVDAGMRELWHTGYMHNRVRMLAGSF 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK L + W+ GE +F   L+D DLA+N+  WQW A +G D+ PYFRIFNP  QG +FDP
Sbjct: 348 LVKHLRLHWKHGEAWFRDTLVDADLANNSASWQWVAGSGADAAPYFRIFNPISQGPKFDP 407

Query: 421 QGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQY 474
            G ++R W+PEL  +PT+++     AP S L +  + L   YP PIVDH KA    L+ Y
Sbjct: 408 DGKYVRRWVPELAKLPTKHLFSPFEAPASVLSEAGVRLGETYPYPIVDHGKARQAALDGY 467

Query: 475 YAAK 478
              K
Sbjct: 468 EDVK 471


>gi|313674183|ref|YP_004052179.1| deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
 gi|312940881|gb|ADR20071.1| Deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
          Length = 433

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/472 (34%), Positives = 226/472 (47%), Gaps = 47/472 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
            + + W R DLR+ DN ALY A    +  V+ +FI   E        S  + +FI+  L 
Sbjct: 3   KISIFWFRRDLRLYDNTALYYAIQE-NIPVLPLFIFDSEILDDLKDKSDARVNFIHDQLT 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++   L + G               E   S   +  +  +F NR YE   + RD+ ++  
Sbjct: 62  EINDQLKKIGSGVLIKHGKPE----EVYKSLIKEYNIQAVFTNRDYEPYALERDQKIDNI 117

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ + I    F D V+     IL    + YKV+TPF+   ++ L    +    +      
Sbjct: 118 LQQKGIGFYDFKDHVIFEKDEILTGGNEPYKVFTPFKNKWLEKLESGHIHPYEIHLTAEN 177

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                  IP   +  F+  D   P  E           +  +  Y ++RD PA  GTS+L
Sbjct: 178 FFQFEPEIPTLDEIGFRESDVPIPKKEYE---------ESTIQKYDQERDFPAKNGTSRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
             +L  G +S R+     ++              +WLNELIWR+FY  ++A +P V    
Sbjct: 229 GIHLRFGTISIREAVAHAQKLN-----------DTWLNELIWRDFYSMILANFPHVVK-N 276

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    + I W       Q W  G TG+PI+DA MR+LN  G+MHNR+RMI ASFL K L
Sbjct: 277 AFKAKYDAIPWRNSKEDFQKWCAGKTGYPIVDAGMRELNETGYMHNRVRMIVASFLTKHL 336

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +LLD +LASNNGGWQWAA TG D+ PYFRIFNP  Q  +FD    +I
Sbjct: 337 LIDWRWGEAYFAEKLLDYELASNNGGWQWAAGTGTDAQPYFRIFNPYSQTDKFDKNKAYI 396

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + W+PE+N                   + +YP P+VDHKKA    L+ Y +A
Sbjct: 397 KKWIPEIN-------------------TSDYPEPMVDHKKARQRALDTYKSA 429


>gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 477

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 159/485 (32%), Positives = 243/485 (50%), Gaps = 24/485 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A S+ + W R DLR+ DN +L AA    D  V+ +FI   +    H   A    +++ +L
Sbjct: 2   ASSIIIHWFRQDLRLADNPSLVAAAQAGD--VLPLFILDDDNAGDHKTGAAGRSWLHHAL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL  K  V +        D ++ +     +   + +F+NR YE   + RDK+L+ 
Sbjct: 60  NALNMSLDGKLCVMR-------GDPVDIIPKLVAKVGASGVFWNRCYEPWRIARDKMLKT 112

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L  + +  +SF+ S+L  P ++L      Y+V+TPF +    N     L      A++L
Sbjct: 113 NLTNNNIQVESFNGSLLWEPWTVLKGDGTPYRVFTPFYRRGCLNAAPPRLPLARPDAMQL 172

Query: 185 TGPVTPS----NIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                 S     +    D+ + A +   + IGE  A+  L  F +  +  Y + R+ PA 
Sbjct: 173 VADPESSMSIDALNLLPDHDWGAKMASHWQIGEAAAMTRLHDFVEGGLNGYKDGRNFPAR 232

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LS +L  G +SP   W    E+              +L+EL WREF   L+  +P
Sbjct: 233 PHTSRLSAHLHWGEISPNMAWYAAIEKRDQAGFDN--DIDVFLSELGWREFSHSLLYHFP 290

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +       P  +   W  D + L+AW+QG TG+PIIDA MR+L   G+MHNR+RMI  S
Sbjct: 291 HLPRQN-LQPKFDSFPWQSDDNALRAWQQGKTGYPIIDAGMRELWETGYMHNRVRMIVGS 349

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK+LL+ W  GE +F   L+D DLA+N+ GWQW A  G D+ PYFR+FNP  QG +FD
Sbjct: 350 FLVKNLLLHWHHGEAWFWDCLVDADLANNSAGWQWIAGCGADAAPYFRVFNPITQGTKFD 409

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473
             G++ R ++PEL  +P +Y+ +P              L  +YP PIVD K++    L  
Sbjct: 410 ADGSYTRRFVPELATLPNKYLFSPWEAPALELQAAGITLGKDYPNPIVDVKRSREAALAA 469

Query: 474 YYAAK 478
           +   +
Sbjct: 470 FATTR 474


>gi|121594169|ref|YP_986065.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42]
 gi|120606249|gb|ABM41989.1| deoxyribodipyrimidine photo-lyase type I [Acidovorax sp. JS42]
          Length = 488

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 177/495 (35%), Positives = 252/495 (50%), Gaps = 36/495 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSH 59
           M A+      LVWLR DLR  D+ ALY A    + +V  VF+   +          R+  
Sbjct: 1   MPAS-----ALVWLRRDLRCHDHAALYHALRRFE-RVYCVFVFDTDILDALPTRCDRRVE 54

Query: 60  FIYASLLQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           FI+AS+  + + L          G        +    +++ +        V ++  NR Y
Sbjct: 55  FIHASVCALDEDLRALAARSGAPGGGLIVRHGT----AVQCIVQLARSLGVREVLANRDY 110

Query: 113 EINEVRRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           E   + RD+ +   L    I  S + D VLL  G +LN   Q Y V+TP+++  +Q L  
Sbjct: 111 EPAALARDRRVADGLAACGIAFSDYKDQVLLEQGEVLNQQGQPYSVFTPYKRTWLQKLDA 170

Query: 172 ADLRSLPV--PAIRLTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEK 226
              +  PV   A  L  P     +P   D  F      D   P+G + A  +L+ F   +
Sbjct: 171 FQTKPYPVERHAQHLAVPPAGERLPTLADLGFVPTNLADLQLPVGSRGAQQLLQDFLP-R 229

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           +  Y   RD P  +G S LS +L  G +S RQ  +    +          GA +WL+EL 
Sbjct: 230 MAAYKLARDFPGRKGVSYLSVHLRFGTVSIRQLASLAARQAAQ----GCQGAQTWLSELA 285

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR+FY  ++  +P V   + F P  ++++W+      QAW    TG+P++DAAMRQL   
Sbjct: 286 WRDFYFMILWHHPHVVT-QAFRPEYDRVQWDDAPEYWQAWCAARTGYPLVDAAMRQLLQT 344

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+ ASFL KDL +DWR GE +F   L D DLA+NNGGWQWAASTG D+ P+F
Sbjct: 345 GYMHNRLRMVVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPWF 404

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           RIFNP  Q ++FDP G FIR +LPEL  VP +++H P              L ++YPLP+
Sbjct: 405 RIFNPVAQSQKFDPDGRFIRRYLPELACVPDKHLHFPAGMKPLELQACGLRLGIDYPLPV 464

Query: 461 VDHKKACHHTLNQYY 475
           VDH  A   TL +++
Sbjct: 465 VDHASARERTLMRFH 479


>gi|71280055|ref|YP_268123.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H]
 gi|71145795|gb|AAZ26268.1| deoxyribodipyrimidine photolyase [Colwellia psychrerythraea 34H]
          Length = 470

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 204/473 (43%), Positives = 283/473 (59%), Gaps = 13/473 (2%)

Query: 11  LVWLRNDLRITDNKALYA-----ACHNSDAKVIA--VFIATPEQWRQHGISARQSHFIYA 63
           L+WLRNDLR  DN AL+      A    D+ V A  +F    +QW+QH  S  +  FI  
Sbjct: 2   LLWLRNDLRTHDNPALHYFLSRNALSQHDSAVPAKAIFFICEQQWQQHDWSPIKIDFIKR 61

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
               + K L+   I  +  +  NF     +L SYC    +T++  N + E NE +RDK L
Sbjct: 62  HAHALVKELALLNIELELIELDNFTQQKTYLHSYCQLHNITEVVANSEVEFNEQQRDKAL 121

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
              L+   I     +  V++P G +LN +  MYKV+TPF++A +  + Q     L   ++
Sbjct: 122 YLELKASGIPLTLLEADVIVPKGKVLNQSGIMYKVFTPFKRAWLTYIQQGGFEYLGKVSV 181

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           + +      N     +    +I   +P+       IL KF ++K+  Y   RDIP+I+GT
Sbjct: 182 KSSAVNKADNQ----EEDQGSISSTWPLATVFEQQILPKFYQQKISTYKLNRDIPSIKGT 237

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S +SPYL+ GV+SPR     L  +  DLL+   S  FSWLNE+IWREFYRHL+     +C
Sbjct: 238 SGISPYLAAGVISPRFVLRLLLNKHPDLLVASDSEEFSWLNEIIWREFYRHLLFHEQRLC 297

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + +    +++ W+ D+ L  AW QG TG+P++DAAMRQLN  GWMHNRLRM+ ASFL 
Sbjct: 298 KHQCYKENYQEMLWHNDAALFDAWCQGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFLT 357

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR+GE+YFM  L+DGDLASNNGGWQWAASTG D+ PYFRIFNP  Q +RFDP+G
Sbjct: 358 KHLLIDWRLGEKYFMQHLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPIRQSERFDPKG 417

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            FIR ++PELNN+  + IH PH ++  N+L++ +P  IV+HK+A    L  Y 
Sbjct: 418 VFIRKYIPELNNISDKAIHFPHQYIKDNELNIYWPA-IVEHKEARLKALAFYK 469


>gi|197336881|ref|YP_002158424.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11]
 gi|197314133|gb|ACH63582.1| deoxyribodipyrimidine photo-lyase [Vibrio fischeri MJ11]
          Length = 464

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 198/466 (42%), Positives = 265/466 (56%), Gaps = 11/466 (2%)

Query: 18  LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77
           +R  DN AL AA  N      A+F+ +  QW++H  +  Q   I   L++++  L Q  I
Sbjct: 1   MRTIDNPALQAAVEN-QQPTFALFVYSESQWKKHNKAPIQIDLIKRRLVELKNELEQLNI 59

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137
                    F +    + +   +  V  LF N++YE +E  RD  + + L     C  FD
Sbjct: 60  PLIVISSPLFSEIPAKITALFSELSVNALFANKEYEHDERLRDTQVYESL-LNTNCSFFD 118

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197
              +LP G+I+N   Q YKV+TPF+KA   +  Q            L  P     +    
Sbjct: 119 AKCILPVGTIINRTQQPYKVFTPFKKAWKASFYQQQPHITKTERSVLCDPKLIEKLSLNN 178

Query: 198 DYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
           D  F  +       + +  +  + ILR+FC++KV  Y   RD P IQGTSQLSPYL+IG 
Sbjct: 179 DDSFTFLSSNESGSWTVSTKAIIDILRQFCRQKVSQYHNNRDYPEIQGTSQLSPYLAIGA 238

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           +S +QC  RL    ++   +   G   WL+ELIWREFY HL+ FYP++   + F+ + + 
Sbjct: 239 ISAKQCALRLH---LEANYELNQGEDIWLDELIWREFYTHLLHFYPNLSKNQAFLSYDKY 295

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
           IEW+ +    + W +G TGFPI+DAAM+QLNT GWMHNRLRMITASFLVKDL +DWR GE
Sbjct: 296 IEWDNNLDNFERWCKGETGFPIVDAAMKQLNTTGWMHNRLRMITASFLVKDLHIDWRWGE 355

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           +YFMS+L+DGD ASNNGGWQW AS G DS PYFRIFNP  QGK+FD   TFI+HWLPEL 
Sbjct: 356 QYFMSKLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPITQGKKFDADCTFIKHWLPELK 415

Query: 434 NVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            +  + IH P+        S NYP  IVDH +     +  Y  AK+
Sbjct: 416 ALSNKEIHHPN--PAPLLKSDNYPDQIVDHAQQRIKVIEVYKQAKQ 459


>gi|114570041|ref|YP_756721.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
 gi|114340503|gb|ABI65783.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
          Length = 499

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 170/494 (34%), Positives = 247/494 (50%), Gaps = 23/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +++A +  LVW R DLR+ DN AL+AA   S   ++  FI  P+   Q         +
Sbjct: 1   MASSSATAAALVWFRRDLRLHDNPALWAAVR-SGRPLVCAFIDDPDAVAQLAPGRASRWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  + +S+ Q+G      +     D+   L   C +   +++F+NR         D
Sbjct: 60  LHHSLAALSRSIRQRGGQLVLRRG----DTTSELVRLCGETGSSEVFWNRGDNPTRDSGD 115

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L  RL  R +  + F    L  P + LN + + Y+V+TPF KA ++        +LP 
Sbjct: 116 TALAARLADRGVKARGFASGTLFNPATHLNGSGKPYRVFTPFWKACLR--APEPSAALPA 173

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           P       VT S+    +    QA D        +  GE  AL+ L  F   ++  Y + 
Sbjct: 174 PDRLPGAAVTASDNLEDWSLRPQAPDWASGFSQDWEPGEDGALNRLEAFLANELADYPQS 233

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P   GTS+LSP+L+ G +SPR  W+ +++           G   +L+EL WR+F  +
Sbjct: 234 RDRPDEDGTSRLSPHLAWGEISPRTIWHTVRDHAE--RGGSFQGGEKFLSELGWRDFAIY 291

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   + S+   + F    +   W  +   L AWK+G TG PI+DA MRQL T GWMHNR+
Sbjct: 292 LAHHFGSL-RDENFNRQFDHFPWRSNPAGLDAWKRGQTGIPIVDAGMRQLWTTGWMHNRV 350

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFL+K L V WR G  +F   L+D DL  N   WQW A +G D+ PYFRIFNP  
Sbjct: 351 RMITASFLIKHLGVHWRDGMAWFEDTLVDADLNVNAASWQWVAGSGADAAPYFRIFNPVT 410

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
           QG+RFDPQG ++  W+PEL  +  + +HAP +            L   YP P+ D K   
Sbjct: 411 QGERFDPQGLYVHRWVPELTGLSGKAVHAPWTRPANELIAAGISLGQTYPAPVTDLKTGR 470

Query: 468 HHTLNQYYAAKKQS 481
              L+ Y   K ++
Sbjct: 471 EQALDAYQTMKARA 484


>gi|221065219|ref|ZP_03541324.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
 gi|220710242|gb|EED65610.1| Deoxyribodipyrimidine photo-lyase [Comamonas testosteroni KF-1]
          Length = 496

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/498 (36%), Positives = 258/498 (51%), Gaps = 23/498 (4%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           T +  V L+WLR DLR+ DN ALY A    + K+  VF+           + R+  FI  
Sbjct: 2   TPSYPVGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILAALPRADRRVEFICQ 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL ++  +L +     Q    +      + + +   Q     +F N   E   + RD  +
Sbjct: 61  SLAELDAALRETTGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAALARDAQV 120

Query: 124 EKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            + L+ +  +   F D  +     +L  +L  + V+TP++ A ++ +    L + P    
Sbjct: 121 ARSLKSQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSERD 180

Query: 183 RLTGPVTPSN-----IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQR 234
             +      +     IP   D  F          P G   A  +L  F   ++  Y   R
Sbjct: 181 LASKLADLPDTERRTIPSAADLGFAPDTLAGLRLPTGVSGARRLLADFLP-RLPQYKAAR 239

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYR 292
           D PA++G S LS +L  G +S R+      E     D     + GA +WL+ELIWR+FY 
Sbjct: 240 DFPALKGPSYLSVHLRFGTVSIRELARLAHEAAHHEDWSAAAREGAATWLSELIWRDFYF 299

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            ++A  P V + + F P  + IEW   +    L  AW +G TG+P++DAAMRQLNT G+M
Sbjct: 300 QILAHQPYV-VERSFKPAYDAIEWETGAEADALFAAWCEGRTGYPLVDAAMRQLNTSGYM 358

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRM+TASFLVKDL +DWR GE YF  +L D DLA+NNGGWQWAASTG D+ P+FRIF
Sbjct: 359 HNRLRMVTASFLVKDLGLDWRRGEAYFGEKLNDFDLAANNGGWQWAASTGCDAQPWFRIF 418

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKND----LSLNYPLPIVDH 463
           NP  Q ++FDP+G FI  ++PEL  +P +  HAP     L+  +    L  +YPLP+VDH
Sbjct: 419 NPVTQSEKFDPEGKFIVRYVPELTPLPAKLRHAPWLAKPLELAEAGIALGRDYPLPVVDH 478

Query: 464 KKACHHTLNQYYAAKKQS 481
             A   TL +Y   KK+S
Sbjct: 479 AAAREKTLARYGILKKES 496


>gi|153209159|ref|ZP_01947255.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218603|ref|YP_002305390.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
 gi|120575482|gb|EAX32106.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012865|gb|ACJ20245.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
          Length = 472

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/478 (37%), Positives = 264/478 (55%), Gaps = 24/478 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W R DLR++DN AL  A  ++D  +I ++I   +      +   Q  ++Y SL  +
Sbjct: 2   TTIFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLVDAQRWWLYHSLSSL 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q +LS+KG      +     D+   L     + +V K+++NR YE      D  LE RL 
Sbjct: 58  QTALSKKGTSLILKKG----DTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLP 113

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIR 183
             +  + +  ++L  P  I N +   YK++TPF K +  +L      + P       AI+
Sbjct: 114 P-LSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRAIK 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                T + +P+  D+  Q  D  +  GE+NA  +L+KF KE +  Y   RD P I  TS
Sbjct: 173 SDNLETWNLLPKHPDWS-QGFDQ-WKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL  G +S RQ W  + +  +      +  A  +L +LIWREF  +L+  +P +  
Sbjct: 231 HLSPYLHFGEISIRQVWTAITQATIQ-DKNLQKAADVFLRQLIWREFAYYLLWHFPQMGK 289

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    +  +W K+ + L+AW++  TG+PI+DA MR+L   G+MHNR+RMI ASFLVK
Sbjct: 290 SN-FRNQFDNFKWKKNKNWLRAWQKWLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLVK 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL++DWR GE++F + LLD DLA+N  GWQW A  G D+ PYFRIFNP +Q K+FDP GT
Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDGT 408

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +I+ W+PEL  VP++YIH P    D      K +L ++YP PIV+H KA    L  Y 
Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAKELALKAYK 466


>gi|264680117|ref|YP_003280026.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
 gi|262210632|gb|ACY34730.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
          Length = 512

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 178/500 (35%), Positives = 257/500 (51%), Gaps = 23/500 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
             T +  V L+WLR DLR+ DN ALY A    + K+  VF+           + R+  FI
Sbjct: 16  SMTPSYPVGLIWLRRDLRLADNAALYHALQQCE-KLYCVFVFDDSILAALPRADRRVEFI 74

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL ++  +L +     Q    +      + + +   Q     +F N   E   + RD 
Sbjct: 75  CQSLTELAAALRETAGRPQTGLITRRGLPQDIIPALARQLGAGAVFCNDDDEPAAIARDA 134

Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            + + L+ +  +   F D  +     +L  +L  + V+TP++ A ++ +    L + P  
Sbjct: 135 QVARSLKSQGQLLLRFKDHRIFARDEVLTQSLSPFSVFTPYKNAWLRKITPFYLSAYPSE 194

Query: 181 AIRLTGPVTPSN-----IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVE 232
               +      +     IP   D  F          P G   A  +L  F   ++  Y  
Sbjct: 195 RDLASKLADLPDTERRPIPSAADLGFAPDTLAGLRLPTGVSGARQLLADFLP-RLPQYKT 253

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREF 290
            RD PA++G S LS +L  G +S R+      E     D     + GA +WL+ELIWR+F
Sbjct: 254 ARDFPALKGPSYLSVHLRFGTVSIRELARLAHEAAHNEDWSAAAREGAATWLSELIWRDF 313

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIG 347
           Y  ++A  P V + + F P  + IEW   +    L  AW +G TG+P++DAAMRQLN+ G
Sbjct: 314 YFQILAHQPYV-VERSFKPAYDAIEWETGAEADTLFAAWCEGRTGYPLVDAAMRQLNSSG 372

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+TASFLVKDL +DWR GE YF  +L D DLA+NNGGWQWAASTG D+ P+FR
Sbjct: 373 YMHNRLRMVTASFLVKDLGLDWRRGEAYFAEKLNDFDLAANNGGWQWAASTGCDAQPWFR 432

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKND----LSLNYPLPIV 461
           IFNP  Q ++FDP G FI  ++PEL  +P +  HAP     L+  +    L  +YPLP+V
Sbjct: 433 IFNPVTQSEKFDPDGKFIVRYVPELTPLPAKLRHAPWLAKPLELAEAGITLGRDYPLPVV 492

Query: 462 DHKKACHHTLNQYYAAKKQS 481
           DH  A   TL +Y   KK++
Sbjct: 493 DHAAAREKTLARYGILKKEA 512


>gi|126665160|ref|ZP_01736143.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
 gi|126630530|gb|EBA01145.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
          Length = 488

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 192/489 (39%), Positives = 266/489 (54%), Gaps = 22/489 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNS----DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
             LVW RNDLR  DN AL AAC ++       V A FI T EQW  H  SA + H +   
Sbjct: 2   TQLVWFRNDLRAADNPALAAACQSAAQSSGEPVEACFIVTTEQWLSHDWSAAKVHLMLDH 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
              + + L++ GI   + + ++F+ S+  L+++C   +++++ +N +Y +NE RRDK L+
Sbjct: 62  ADALAQELAKLGIALSFLRAADFEQSLSTLEAFCRDHKISQVHFNEEYGVNERRRDKALK 121

Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            R     V    + D   +P G +L    + Y V+TPF +       +     L VP   
Sbjct: 122 PRFDTLGVKVSKYRDQAAVPVGEVLTQQSEPYSVFTPFSRRWRSWQEEQQPALLAVPKKV 181

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF--------PIGEQNALHILRKFCKEKVYYYVEQRD 235
                             + +D +F          GE  A   L+ F +E+   Y   RD
Sbjct: 182 GEALAGADVKNSSSVILKKEVDALFGEAPPALVATGENAAHDALQDFLQERAGDYKNDRD 241

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL------LIKPKSGAFSWLNELIWRE 289
            PAI+GTS+LSPYL+IG LS RQC     +    +          + G F+W  EL WR+
Sbjct: 242 FPAIEGTSKLSPYLAIGALSGRQCVQAAWQLKQSMGSSFGKAANDEEGFFTWETELAWRD 301

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FY H++   P V M + F P TE ++WN      +AWK G TG P++DAAMRQLN   WM
Sbjct: 302 FYIHILYHCPRVSMHRAFKPETEALQWNTADEHFEAWKNGRTGIPMVDAAMRQLNETSWM 361

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRM+ A FL K+L +DWR GE YFMS+L DG LASNNGGWQW+ASTG D+ PYFR+F
Sbjct: 362 HNRLRMVAAMFLTKNLFIDWRRGEAYFMSKLADGYLASNNGGWQWSASTGTDASPYFRVF 421

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
           NP  QG+RFD  G FIRHW+PEL  + ++ IH P        +   YP PIVD K++   
Sbjct: 422 NPMTQGERFDADGEFIRHWVPELAKLDSKRIHNPGK---GGVIPGGYPRPIVDLKESRKE 478

Query: 470 TLNQYYAAK 478
            + ++ A +
Sbjct: 479 AIARFQALR 487


>gi|222111113|ref|YP_002553377.1| deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY]
 gi|221730557|gb|ACM33377.1| Deoxyribodipyrimidine photo-lyase [Acidovorax ebreus TPSY]
          Length = 488

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 179/495 (36%), Positives = 253/495 (51%), Gaps = 36/495 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSH 59
           M A+      LVWLR DLR  D+ ALY A    + +V  VF+   +          R+  
Sbjct: 1   MPAS-----ALVWLRRDLRCHDHAALYHALRRFE-RVYCVFVFDTDILDALLTRCDRRVE 54

Query: 60  FIYASLLQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           FI+AS+  + + L          G        +    +++ +        V ++  NR Y
Sbjct: 55  FIHASVCALDEDLRALAARSGAPGGGLIVRHGT----AVQCIVQLARSLGVREVLANRDY 110

Query: 113 EINEVRRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           E   + RD+ +   L    I  S + D VLL  G +LN   Q Y V+TP+++  +Q L  
Sbjct: 111 EPAALARDRRVADGLAACGIAFSDYKDQVLLEQGEVLNQLGQPYSVFTPYKRTWLQKLDA 170

Query: 172 ADLRSLPV--PAIRLTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEK 226
              +  PV   A  L  P     +P   D  F A    D   P+G + A  +L+ F    
Sbjct: 171 FQTKPYPVERHAHHLAVPPAGERLPTLADLGFVATNLADLQLPVGSRGAQQLLQDFLPH- 229

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           +  Y   RD P  +G S LS +L  G +S RQ  +    +          GA +WL+EL 
Sbjct: 230 MAAYKLARDFPGRKGVSYLSVHLRFGTVSIRQLASLAARQAAQ----GCEGAQTWLSELA 285

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WR+FY  ++  +P V   + F P  ++++W+      QAW    TG+P++DAAMRQL   
Sbjct: 286 WRDFYFMILWHHPHVVT-QAFRPEYDRVQWDDAPEYWQAWCAARTGYPLVDAAMRQLLQT 344

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+ ASFL KDL +DWR GE +F   L D DLA+NNGGWQWAASTG D+ P+F
Sbjct: 345 GYMHNRLRMVVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPWF 404

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           RIFNP  Q ++FDP G FIR +LPEL  VP +++H P S            L ++YPLP+
Sbjct: 405 RIFNPVAQSQKFDPDGRFIRRYLPELACVPDKHLHFPASMKPLELQACGLRLGIDYPLPV 464

Query: 461 VDHKKACHHTLNQYY 475
           VDH  A   TL +++
Sbjct: 465 VDHASARERTLMRFH 479


>gi|121606238|ref|YP_983567.1| deoxyribodipyrimidine photo-lyase [Polaromonas naphthalenivorans
           CJ2]
 gi|120595207|gb|ABM38646.1| deoxyribodipyrimidine photo-lyase type I [Polaromonas
           naphthalenivorans CJ2]
          Length = 477

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/486 (34%), Positives = 248/486 (51%), Gaps = 26/486 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ DN AL+ A  + + +V   F+           + R+  FI  SL+ + + 
Sbjct: 1   MWFRRDLRLQDNAALHHALKSCE-QVFCAFVFDRAILDSLPKADRRVEFIRESLVDLNRQ 59

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HR 130
           L++  +            +++ L +   +  V  +F N   E   + RD  ++  L+   
Sbjct: 60  LAKLALP--AGLLIRHGTALDALPALASRLSVDAVFANHDDEPCSLARDAEVQGLLECAG 117

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V   +F D V+     +L  A Q Y V+TP++KA ++ +    L+  PV          P
Sbjct: 118 VAFHTFKDHVIFERQEVLTLAGQPYTVFTPYKKAWLKKVDAFYLQPYPVEKYASALAARP 177

Query: 191 SNIPR----FFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           ++  +      +  F+  +      P G Q A  +   F  +++ +Y + RD PA++G S
Sbjct: 178 ADERQDVPALAELGFEKTNLSALRLPTGSQGAEALFDDFL-DRMPHYADTRDFPAVKGPS 236

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            L  +L  G +S R+       +          GA +WL+ELIWR+FY  ++A +P    
Sbjct: 237 YLGVHLRFGTISIRKITLNALAQQQ----TGSEGAATWLSELIWRDFYAQILANFPHAA- 291

Query: 304 GKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              F P  + I W +      L QAW +G TG+P++DAAM QLN  G+MHNRLRM+TASF
Sbjct: 292 SSAFKPGYDAIAWEQGEKAELLFQAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRMVTASF 351

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDL +DWR GE YF  +L D DLASNNGGWQWAASTG D+ PYFRIFNP  Q ++FD 
Sbjct: 352 LVKDLGIDWRWGERYFAEKLNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVSQSEKFDA 411

Query: 421 QGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            G FIR +LP L  +P   +H+P              L  NY  P+V H +A   TL +Y
Sbjct: 412 DGKFIRKYLPVLAKLPKAALHSPWLASPMERAAASVALGSNYARPVVAHAEARALTLQRY 471

Query: 475 YAAKKQ 480
              KK 
Sbjct: 472 ALVKKS 477


>gi|217965318|ref|YP_002350996.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
 gi|217334588|gb|ACK40382.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
 gi|307570126|emb|CAR83305.1| phr [Listeria monocytogenes L99]
          Length = 467

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 169/481 (35%), Positives = 245/481 (50%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR       +RD+  +   
Sbjct: 57  KQEIDK-----TAHVQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAKRDEAAQAFF 111

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + ++  +SF DS L     +     + YK++TP+ K   + + +   +    P      
Sbjct: 112 DEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  +  Y + RD P +  TS LS
Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E       K   G  ++  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISIRTVWQALQE------TKATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP   FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTAKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP P++DHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLVLGKDYPFPLIDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|187478325|ref|YP_786349.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N]
 gi|115422911|emb|CAJ49439.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N]
          Length = 485

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 182/466 (39%), Positives = 261/466 (56%), Gaps = 6/466 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVWLR+DLR+ DN     A   +     A+F A P QW+ HG +A +  F   +L+ + 
Sbjct: 14  TLVWLRSDLRLHDNP--ALAAAAAQGHTHALFFAAPGQWQSHGDAAIKIDFWRRNLVALH 71

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128
           ++L++ G         ++ ++ + L  +C Q R+  +  N ++ INE RRD    +RLQ 
Sbjct: 72  QALAELGFDLSVITLQDWSEAPQALAQFCRQHRIESVHVNAEWGINERRRDGACAQRLQA 131

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +      LLPPGS+ N     Y+V+TP+ +A  + L  A    +  P  +     
Sbjct: 132 EGIAFEVHQGGTLLPPGSVRNGKGDPYRVFTPYARACREKLRVAPPAPVRAPKAQGPAFA 191

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                             ++P GE  A   LR F  + +  Y E+RD+PA+ GTS LSPY
Sbjct: 192 PAEFDWPPSAEFPAQAATLWPAGETAAHERLRAFLDDGLMRYHERRDLPAVPGTSALSPY 251

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ GVLSP QC           +   ++G   W+ E++WREFY+HL+A YP++ M +P  
Sbjct: 252 LACGVLSPAQCLRAALRANQGEIDSGQTGPRVWITEILWREFYQHLLAAYPALSMHQPMR 311

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           P T  + W        AW+ G TG PI+DAA RQL   GWMHNRLRMI+A FL K+LL+D
Sbjct: 312 PETAYLAWRDAPQDAAAWRAGRTGIPIVDAAQRQLLATGWMHNRLRMISAMFLSKNLLID 371

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+GE +FM+ L+DG+LA+NNGGWQW+ASTG D+VPYFR+FNP  Q ++FDP G F+R W
Sbjct: 372 WRLGEAWFMAHLIDGELAANNGGWQWSASTGADAVPYFRVFNPITQSQKFDPDGVFLRRW 431

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           LPEL N+ ++ IH P     +      YP  IVD K +    +  +
Sbjct: 432 LPELANLDSKSIHEPSDAQRRASA---YPKAIVDLKSSRLRAIEAF 474


>gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
 gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
          Length = 475

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/482 (31%), Positives = 256/482 (53%), Gaps = 20/482 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              +VW+R D R+ DN AL+ A       V+ V+I     + +  + +    +++ +L  
Sbjct: 3   KTIIVWIRKDFRLVDNPALFHAAKEG--MVVPVYIHD--DYEESSMGSASKWWLHHALND 58

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + S+ +        + +  D     L     +     +++N +YE + ++RDK L+   
Sbjct: 59  FKTSIKKIEGTLIVQKGNPKD----VLQKLLHETNAQDIYWNSRYEPHALKRDKELQAFF 114

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AIRL 184
            + ++  ++F+  +L  P  I       YKV+T + KA  ++ V + ++ +     + + 
Sbjct: 115 SEQQINIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKP 174

Query: 185 TGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              ++ S++      P+ + I   +   E+ A+ + + F K K+ +Y + RD PA    S
Sbjct: 175 VESLSVSDLDLLPSIPWDETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEALNS 234

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVC 302
            LSPYL+ G LS R  ++ L+ +   +     +  A  ++ +LIWR+F   L+  +P   
Sbjct: 235 FLSPYLATGQLSARVLYHYLRTKAEKVGSDAFEQQAEMFIRQLIWRDFAYQLLYHFPHTT 294

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +P     ++ +W   +  LQAWK G TG+P++DA MR+L   G+MHNR+RM+ ASFLV
Sbjct: 295 T-EPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMVAASFLV 353

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W+ G  +F   L+D DLA+N  GWQW A +G D+ PYFRIFNP  Q ++FD +G
Sbjct: 354 KHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSEKFDKEG 413

Query: 423 TFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476
            +I+ WLPEL ++P+ YIH P       L+K +++LN  YP PIVDHK A    L  Y  
Sbjct: 414 EYIKKWLPELKDIPSSYIHKPWEAPADVLEKANVTLNKTYPAPIVDHKAARERALEHYQH 473

Query: 477 AK 478
            K
Sbjct: 474 IK 475


>gi|209809629|ref|YP_002265168.1| deoxyribodipyrimidine photo-lyase (photoreactivating enzyme)
           [Aliivibrio salmonicida LFI1238]
 gi|208011192|emb|CAQ81620.1| deoxyribodipyrimidine photo-lyase (photoreactivating enzyme)
           [Aliivibrio salmonicida LFI1238]
          Length = 479

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 206/480 (42%), Positives = 273/480 (56%), Gaps = 13/480 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +   VW R DLRI DN AL AA  N     IA+++ +  QW++H  S+ Q   I   LL+
Sbjct: 6   TTQCVWFRTDLRIADNPALSAALAN-QEPTIALYVVSEAQWKKHHKSSIQIDLIKRRLLE 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K L +  +      C  F ++ E L   C    +T LF N++YE +E+ RD  +  +L
Sbjct: 65  LEKELQEINVPLIIVSCPWFKNTSEQLTMLCNDLNITHLFANKEYEADELARDADVRSQL 124

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +    ++    +  G I+N   + YKV+TPF+KA      Q       V        
Sbjct: 125 T-NIESHFYNAKCAVTVGKIINKTQKPYKVFTPFKKAWRAYFYQHFPTIEKVIPSVPLSE 183

Query: 188 VTPSNIPRFFDYPFQAI----DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              S +  + D  F +       ++P+     L  +R FC+EK   Y +QRD PAI GTS
Sbjct: 184 QQLSTLTSYLDRKFTSSMNNESKVWPVSNTAILKKMRLFCREKSQDYHDQRDYPAIDGTS 243

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           Q+SPYL+IG LS +QC  RL  E  + L + +     WL+ELIWREFY HL+ F+PS+  
Sbjct: 244 QISPYLAIGALSAKQCILRLHLEANNQLSQGQ---EIWLDELIWREFYTHLLYFFPSLSK 300

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F+ + + I+WN      + W  G TG+PI+DAAM+QLNT GWMHNRLRMITASFLVK
Sbjct: 301 NHAFLDFEKHIQWNNKQDQFEQWCNGETGYPIVDAAMKQLNTTGWMHNRLRMITASFLVK 360

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE+YFMS L+DGD ASNNGGWQW AS G DS PYFRIFNPT Q +RFD  G 
Sbjct: 361 DLHIDWRWGEQYFMSTLIDGDFASNNGGWQWCASVGCDSSPYFRIFNPTTQSERFDNNGV 420

Query: 424 FIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           FI++WLP L  +  + +H P    L K D   NY  PIVDH      TL  Y  AK Q +
Sbjct: 421 FIKYWLPNLAALLGKQLHQPSVKPLLKPD---NYVDPIVDHSVQRLKTLELYKQAKIQDV 477


>gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
           7335]
 gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
           7335]
          Length = 480

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 175/481 (36%), Positives = 242/481 (50%), Gaps = 22/481 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN  L AA      KV+ VF   P       I+  +  ++  SL ++Q+
Sbjct: 7   LFWHRRDLRIRDNLGL-AAARKRTPKVVGVFCLDPGILNGDDIAPARVSYMIGSLAELQE 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +    G      +        E + +         +++NR  E     RD  +   L+ R
Sbjct: 66  NYQSAGSELLILKGKPE----EAIPNLASALGAAAVYWNRDVEPYARERDPNVASALKDR 121

Query: 131 VICKS--FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            I  S  + D +LLPP ++   A + YKVYTPF +  I+   Q    +            
Sbjct: 122 DIESSTQYWDQLLLPPDALKTGAGEPYKVYTPFWRKWIRQEKQPPASTFAAATGLSPHEK 181

Query: 189 TPSNIPRFFDYPFQAI-------DPMFPIGEQNALHILRKFCKEKV--YYYVEQRDIPAI 239
           + +N     D P           + +   GE  AL  L KFC ++     Y +QRD P+I
Sbjct: 182 SLANKAGNIDLPTAKALGYEWENELLLQPGEAAALAQLEKFCDDRRVIAEYDQQRDYPSI 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFY 298
            GTS LS  L  G L  R  W    + +     +       +W  EL WREFY+ +M  +
Sbjct: 242 AGTSTLSAALKFGTLGIRTVWEAASDAYSRARSEETHRNIRTWQQELAWREFYQSVMYTF 301

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P++  G P+    +   W+ D  L QAW +G TG+PI+DAAMRQLN  GWMHNR RMI A
Sbjct: 302 PNLAEG-PYREPLKDFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCRMIVA 360

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDL++DWR GE+YFM  L DGDL++NNGGWQW+AS+G D  P  RIFNP  Q K++
Sbjct: 361 SFLTKDLIIDWRWGEKYFMQHLFDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAKKY 419

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQYYAA 477
           DP+  +IR WLPE+ ++ T  +      +D NDL    YP  +VDHK+       +Y A 
Sbjct: 420 DPEAEYIREWLPEIRHLDTGALV--SGKIDSNDLEGTGYPCKVVDHKEQQAIFKERYKAQ 477

Query: 478 K 478
           K
Sbjct: 478 K 478


>gi|323228026|gb|EGA12170.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
          Length = 387

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 204/390 (52%), Positives = 273/390 (70%), Gaps = 4/390 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F  SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFSASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCAQGADEYESRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMIWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PFI WT+++ W ++SH  QAW++G TG+PI+DAAMRQLN  GWMHNRLRMITASFLVKDL
Sbjct: 298 PFIRWTKRVAWQENSHDFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDL 357

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           L+DWR+GE YFMSQL+DGDLA+NNGGWQWA
Sbjct: 358 LIDWRLGERYFMSQLIDGDLAANNGGWQWA 387


>gi|311748125|ref|ZP_07721910.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
 gi|126576610|gb|EAZ80858.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
          Length = 432

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 160/473 (33%), Positives = 236/473 (49%), Gaps = 47/473 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASL 65
             + + W R DLR+ DN  LY A    +  V+ +FI            +  +  FI+  +
Sbjct: 2   KKLSVFWFRRDLRLEDNTGLYYALQQ-ETDVLPLFIFDRTILDDLEDKTDARVSFIHDQI 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++ L +KG          +    E       +  +  ++ NR YE    +RD+ +EK
Sbjct: 61  QNLKEELEKKGSTLLVK----YGTPEEVYQELIKKFEIQAIYTNRDYEPYAKKRDRAIEK 116

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             + + I   +F D V+  PG ILN + + YKV+TPF +  +    + ++ +L     + 
Sbjct: 117 LAEEKGISFLTFKDQVIFEPGEILNGSGEFYKVFTPFSRVWLSKFEETNIEALSYFHWKN 176

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                P  +    +  F+      P              +E + YY + R+ PA  GTS+
Sbjct: 177 LYQTKPEPLISLKEMGFERSSISIPS---------SNPNEEIIKYYDKTRNFPAENGTSR 227

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           L  +L  G +S RQ           L +K  S   ++LNELIWREFY  ++ + P V + 
Sbjct: 228 LGIHLRFGTISIRQ-----------LALKAASLNETYLNELIWREFYMMILDYNPQV-VD 275

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           K F P  ++I W  +    +AW +G TG+PI+DA MR+LN  G+MHNR+RMI ASFL K 
Sbjct: 276 KAFKPAYDQIPWRNNEEEFKAWCEGKTGYPIVDAGMRELNQTGYMHNRVRMIVASFLTKH 335

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +LLD DLA+NNGGWQWAA TG D+ PYFR+FNP+ Q ++FD    +
Sbjct: 336 LLIDWRWGEAYFAKKLLDFDLAANNGGWQWAAGTGTDAQPYFRVFNPSSQTEKFDKDLKY 395

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ W+PE                     +  YP PIVDHK A    L+ Y  A
Sbjct: 396 IKKWIPEFG-------------------TEKYPKPIVDHKFARQRALDTYKKA 429


>gi|160897024|ref|YP_001562606.1| deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
 gi|160362608|gb|ABX34221.1| Deoxyribodipyrimidine photo-lyase [Delftia acidovorans SPH-1]
          Length = 493

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 181/494 (36%), Positives = 246/494 (49%), Gaps = 26/494 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V LVWLR DLR+ D+ ALY A      +V  VFI   +       + R+  FI  SL  
Sbjct: 6   PVGLVWLRRDLRLADHAALYHALRQC-RQVHCVFIFDDDILAPLPCADRRVEFICQSLSG 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L Q                 E +     Q     +F N   E + + RD  + + L
Sbjct: 65  LDDALRQASGRADTGLIVRRGQPAEQIPDLARQLGAQAVFCNWDDEPDALARDTRVRQAL 124

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP------ 180
               V   SF D ++     +L  A   + V+TP++ A ++ +    L + P        
Sbjct: 125 AAEGVALHSFKDHMVFARDEVLTQAGAPFSVFTPYKNAWLRQITPFFLSAYPSERDLPER 184

Query: 181 -AIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            A R  G   P  +P   D  F+A        P G   A  +L  F   ++  Y + RD 
Sbjct: 185 LAPRPEGERRP--VPTAADLGFEAGTLDGLRLPTGCAGAEELLADFLP-RLPRYKQARDF 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA++G S LS +L  G +S R+   RL  E          GA +WL+ELIWR+FY  ++A
Sbjct: 242 PAVKGPSYLSVHLRFGTVSIRRLA-RLAWEQTQSQPHDAEGAATWLSELIWRDFYFQILA 300

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P V +   F P  + I W+       L  AW +G TG+P++DAAMRQLNT G+MHNRL
Sbjct: 301 HHPHV-VHASFKPAYDAIVWDTGPEADALYAAWCEGRTGYPLVDAAMRQLNTTGYMHNRL 359

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+ ASFLVKDL +DWR GE +F  QL D DLA+NNGGWQWAASTG D+ P+FRIFNP  
Sbjct: 360 RMVAASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVT 419

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKAC 467
           Q ++FD    FI  ++PEL  +P    HAP              L  +YP P+VDH  A 
Sbjct: 420 QSQKFDADARFIERYVPELARLPAALRHAPWQARPLELAEAGVVLGTDYPHPVVDHAAAR 479

Query: 468 HHTLNQYYAAKKQS 481
             TL +Y   K+ S
Sbjct: 480 ERTLARYGVVKQAS 493


>gi|315281208|ref|ZP_07869885.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120]
 gi|313615150|gb|EFR88618.1| deoxyribodipyrimidine photo-lyase [Listeria marthii FSL S4-120]
          Length = 467

 Score =  408 bits (1049), Expect = e-112,   Method: Composition-based stats.
 Identities = 173/480 (36%), Positives = 244/480 (50%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++DNKALY A    D  +I +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVSDNKALYHASKEDD--LILLFQVNPAQFIT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           Q+ L++            F D +E L           K+F+NR        RD   ++  
Sbjct: 57  QQELAK-----TARLQIMFGDPMECLQQLKEAVPTWNKVFFNRDETGYGASRDAAAQQFF 111

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             R +   +F DS L     +     + YK++TP+ K   + + +  L+    P      
Sbjct: 112 DERQIEVHAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEMKEMPLKVTLKPENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GEQ A   L  F KE +  Y + RD P +  TS LS
Sbjct: 172 SLFPKYEEQFAEIVHDL--PVSDAGEQAANARLASFIKEDLTDYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L++       +   G  ++  EL WR+FY  +   +P     +P
Sbjct: 230 RYLRTGEISIRTIWQALQQ------TEATEGRATFEKELCWRDFYNMIYVSFPDQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW       + W++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRYIEWENSRAFFKCWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPAGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL ++P ++IH P    +K        +  +YPLPIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELAHIPDKFIHQPEKMSEKEQNEYGLLVGKDYPLPIVDHKERRKLAIARYEFSKEH 462


>gi|189209473|ref|XP_001941069.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187977162|gb|EDU43788.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 632

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 171/488 (35%), Positives = 258/488 (52%), Gaps = 22/488 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLRI DN  L  A   +  +   VI V++ +P+ W  H +S  +  F   S+  
Sbjct: 138 VHWFKRDLRIRDNTGLSKAAELAKERGIGVIGVWLMSPQDWEAHIVSPPKCDFELRSVEL 197

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKR 126
           ++K L +  I           +  + L     +  V  +F N +YE +E+RR+ +L+   
Sbjct: 198 LKKELEELDIPLYIETIPERRNVTKRLVELAQEWNVKNVFCNLEYEPDELRREERLVRMM 257

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+  +    + D  ++PPGS+ + A + Y VY+P+ +A I +L       +  P      
Sbjct: 258 LEKGIGFDPYHDDCVVPPGSLKSGAGKQYAVYSPWCRAWIAHLHSHPDLLIERPMPGQNP 317

Query: 187 PVTPSNIPRFFD--------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
               +   + FD                 +    ++P GE  A+  L +F  EK+  Y +
Sbjct: 318 ANFRNKFSKLFDASVPSIPESKSLTPEEKERFSRLWPAGEAAAIDRLERFLVEKIVKYKD 377

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ PA+  T ++S + + G L+ R      ++      L   K G  +W+ E+ WR+FY
Sbjct: 378 TRNFPALNSTGRVSVHHAAGTLAARTSIRMARDINSAQKLDGGKDGVKTWIGEVAWRDFY 437

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RH++  +P VCM KPF      I+W  ++    AW +G TG+PI+DAAMR LN  G+MHN
Sbjct: 438 RHVLVHWPYVCMNKPFKYEYTNIDWEYNTAHFTAWTRGQTGYPIVDAAMRCLNHTGYMHN 497

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRMITASFL K LL+DWR+GE+YF+S L+DGD ASNNGGW ++ASTG D  PYFRIFNP
Sbjct: 498 RLRMITASFLAKHLLLDWRLGEQYFLSHLIDGDFASNNGGWGFSASTGVDPQPYFRIFNP 557

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---DLSLNYPLPIVDHKKACH 468
            IQ ++FD  G FIR W+ EL +V  + +H P+    +       + YP PIV+H  A  
Sbjct: 558 WIQSEKFDADGEFIRTWVEELKDVQGKDVHNPYKAGGRAMETARRMGYPEPIVEHTVARA 617

Query: 469 HTLNQYYA 476
             L +Y  
Sbjct: 618 RCLKRYKE 625


>gi|307151428|ref|YP_003886812.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
 gi|306981656|gb|ADN13537.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
          Length = 476

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/477 (34%), Positives = 242/477 (50%), Gaps = 17/477 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S  K++ +F   P    +  ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNIGLSAARQKS-PKIVGIFCLDPNILNKDDVAPARVTYLIGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      +        + +       + + +F+N   E     RD+ +   LQ +
Sbjct: 65  QYQQAGSQLLILRGEPS----QAIPRLAATLKASAVFWNLDVEPYAKNRDEQVINVLQEK 120

Query: 131 VICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------VPAIR 183
            I +  F D +L  PG ++  +   YKV+TPF +   +   Q+ L+ L          + 
Sbjct: 121 GIARENFWDQLLHAPGQLVTQSKDYYKVFTPFWRNWSKLKKQSPLQKLEGLKGLTEEELT 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           LT      ++P      +   +P+    GE  A   L +FC   +  Y EQR+ PA+ GT
Sbjct: 181 LTINAGVIDLPTAKKLGYAWENPLLLDPGETAAKKRLEEFCSSAINEYQEQRNFPAVDGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           S+LS  L  G +  R  W    E + +    + +    +W  EL WREFY+H M F+P +
Sbjct: 241 SRLSAALKFGAIGIRTVWKATLEVYENSRSDEARKSIETWQQELAWREFYQHCMYFFPEL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G  +        W  +    QAW +G TG+PI+DAAMRQLN   WMHNR RMI ASFL
Sbjct: 301 AEG-SYRKDFRSFPWQNNEDYFQAWCEGKTGYPIVDAAMRQLNETAWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL+++W+ GE+YFM +L DGDL++NNGGWQW+AS+G D  P  RIFNP  Q ++FDP+
Sbjct: 360 TKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQAQKFDPE 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           G +IR WLPEL +V T+++               YP PIVDHKK        +   +
Sbjct: 419 GEYIRQWLPELRSVDTEFL-ISGKIPSLERYQCGYPEPIVDHKKRQAEFKLLFQEVR 474


>gi|254292413|ref|YP_003058436.1| deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
 gi|254040944|gb|ACT57739.1| Deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
          Length = 475

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 156/485 (32%), Positives = 247/485 (50%), Gaps = 28/485 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++L W R DLR++DN AL +A  ++ A  IA+FI   E   Q  + +    +++ SL+++
Sbjct: 1   MNLCWFRQDLRLSDNPALRSALSDNSA--IALFILE-ETDTQRPMGSACKAWLHESLIRL 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L   G+     +    D     +       ++  +++NR+Y+  +V  D+ L + L+
Sbjct: 58  QSDLEAIGVPLVLRRGDARD----IIPKLTSDLKIDNVYWNRRYDPKDVAIDRALMEHLK 113

Query: 129 HRVI-CKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              +  +SF  +VL  P  I +  A   YKV++PF KA ++  V A   ++P   I+   
Sbjct: 114 EEGVNVESFKANVLFEPWEIKSAGAGTPYKVFSPFWKAALKEGVPAQSLAVPT-KIQSKP 172

Query: 187 PVTPSNIPRFFDYPFQAIDPMFP--------IGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            +         D+      P +          GE  A    ++F +  +  Y + RD+P+
Sbjct: 173 QLDQLPFDNLEDWDLMPASPNWTNGFWDVWVPGEAGAFERFKEFLEINLKGYSQNRDVPS 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TS LSP+L  G +SP Q W+ +       + K     + +L E+ WREF   ++ FY
Sbjct: 233 KNHTSCLSPHLRFGEISPLQIWHGVHAHSGGEVDKD---GYKFLAEVGWREFSHSIL-FY 288

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                   +    +   W +D + L AW+ G TG+P++DA MR+L   G++HNR+RM+ A
Sbjct: 289 ADNLSQTNWKSDFDGFAWVQDENGLTAWQSGQTGYPLVDAGMRELWQTGYIHNRVRMVVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL+K L +DWR GE +F   L+D   A+N   WQW A +G D+ P+FRIFNP +Q ++F
Sbjct: 349 SFLIKHLRIDWREGEAWFWDTLVDACPANNPASWQWVAGSGADASPFFRIFNPIMQSEKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLN 472
           DP+G++IR W+PEL N+  + IH P              L  NYP PIVDHK A    L 
Sbjct: 409 DPKGSYIRKWVPELANLDNKSIHTPWEAPKLVLQEVGVRLGENYPKPIVDHKTARDKALA 468

Query: 473 QYYAA 477
            Y   
Sbjct: 469 AYKDM 473


>gi|307945306|ref|ZP_07660642.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
 gi|307771179|gb|EFO30404.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
          Length = 486

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/494 (33%), Positives = 251/494 (50%), Gaps = 26/494 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQS 58
           M    A    +VW R DLR+ DN ALY A       VI VFI            I A   
Sbjct: 1   MSNRVAFMTSIVWFRQDLRVADNAALYHAAQEG--PVIPVFIWDDAAPLTNSQAIGAAGK 58

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            +++ SL  +++ L    +V +        D    L    L+ +   + +NR Y+   + 
Sbjct: 59  WWLHHSLTALREQLGDL-VVLR-------GDPATVLQELALETKAEAVRWNRAYDEYGIE 110

Query: 119 RDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RDK ++  L+   ++ KSF  +VL  P  I   +   YKVY+ + +A+    V A L   
Sbjct: 111 RDKKIKTELRESGLMVKSFKGNVLHEPWDIKTGSGSSYKVYSHYWRAVKARGVAAPLPVP 170

Query: 178 PVPAIRL----TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
               + +     G      +PR  ++  +  + ++  GEQ A   L  F  + +  Y E 
Sbjct: 171 DKIELAVGWVSLGIEALDLLPRDPNW-AEGWENVWTPGEQGARERLCVFLDQGLNGYGEL 229

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           R+ P +   S+LSP+L  G +SP Q W    +   D+  +  + A  +L+E++WREF  H
Sbjct: 230 RNRPDLPNVSRLSPHLRFGEISPTQIW-ATTQMHADVHPEHATDADKFLSEIVWREFSYH 288

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L+  +P +   K +    +   W +++  L+AW++G TG+PI+DA MR+L   G+MHNR+
Sbjct: 289 LLFHFPDLPE-KNWKVGFDAYPWRENAEDLRAWQRGQTGYPIVDAGMRELWQTGYMHNRV 347

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFLVK L + W+ GE +F   LLD D+A+N+  WQW + TG D+ PYFRIFNP  
Sbjct: 348 RMIVASFLVKHLRISWQHGENWFRDTLLDADVANNSASWQWVSGTGADAAPYFRIFNPYT 407

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKAC 467
           Q ++FDP G +IR W+PEL ++    + AP              L   YPLP+VDH+ A 
Sbjct: 408 QAQKFDPDGAYIRKWVPELKDLRAPQLFAPQDASPMDLRAAGVRLGETYPLPMVDHQTAR 467

Query: 468 HHTLNQYYAAKKQS 481
              L+ Y A K ++
Sbjct: 468 KKALDGYEAVKAEN 481


>gi|217976568|ref|YP_002360715.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
 gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
          Length = 486

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 151/495 (30%), Positives = 242/495 (48%), Gaps = 27/495 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A    +  +VW R+DLR+ DN+AL AA  ++   ++ V+I          +      +
Sbjct: 1   MAAPKTQNTAIVWFRDDLRLADNEALAAAL-STGGPLLCVYILEDGTAGFRPLGGAARWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  + + ++ KG            ++   L +         + + R+Y   E+  D
Sbjct: 60  LHHSLQALGQDIAAKGGRLDL----FCGEARRILPALAEAAGARIICWTRRYGGPEMAVD 115

Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA---------LIQNLV 170
             L+ + +   V  KSF+  +L  P  I       + VYTP+ +A          +    
Sbjct: 116 AALKAQFKTSGVEAKSFNGHLLHEPWDITRGDGHGFAVYTPYWRAASAAAQVGEPLPAPD 175

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           +     +P  A+R T     + +P   D+    +   +  GE  A   L+ F + ++  Y
Sbjct: 176 RLPAAPIPRGALRTTSIEALALLPEKPDW-AGGLRAAWRPGENGAQERLKAFLEGEIASY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +R+ P+    S+LSP+L  G + PRQ +  ++  + +     + G   +L EL WREF
Sbjct: 235 SLERNRPSADAVSRLSPHLRFGEIGPRQIFAAVRTAWDNA---AQKGGVKFLAELGWREF 291

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
             HL  ++P            +K+ W +     L AW++G TG+P+IDA MR+L   G+M
Sbjct: 292 NYHLSFYHPDAARQN-IQRRFDKMPWREPAPRELSAWQRGETGYPLIDAGMRELWATGYM 350

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM+ ASFL+K LL+DWRIGE +F   L D D A+N   WQW A +G D+ PYFRIF
Sbjct: 351 HNRVRMVVASFLIKHLLIDWRIGENWFWDTLCDADPANNPMNWQWVAGSGADAAPYFRIF 410

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463
           NP +QG++FD  G ++R W+PEL  +P ++IH P +           +L  NYP PIVD 
Sbjct: 411 NPVLQGEKFDAAGDYVRRWIPELAKLPNKWIHKPFAAPPALLRGAGVELGKNYPRPIVDL 470

Query: 464 KKACHHTLNQYYAAK 478
            +     L  +   K
Sbjct: 471 AEGRARALAAFEKVK 485


>gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9]
 gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9]
          Length = 469

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 175/473 (36%), Positives = 243/473 (51%), Gaps = 21/473 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L WLR DLR+ D+ AL +A   S  +V+ VF+           S R+  FI+ SL ++Q
Sbjct: 6   SLCWLRRDLRLDDHAALSSALQQS-REVVCVFVFDRAILDSLPASDRRVDFIHRSLCELQ 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L Q G          +  + E L +   +     +F  +  E   V RD  +  +L+ 
Sbjct: 65  ARLQQHGSTLVCR----YGWADEALPALAAELGAQVVFAAQDDEPASVTRDARVAGQLEQ 120

Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-PAIRLTGP 187
              I     D  L     +L      + V+TP+ +A +  L  AD+   PV P +    P
Sbjct: 121 AGCILHLVKDHTLRARDELLTRTGTPFTVFTPYARAWLARLAPADMAEWPVAPYLDRLCP 180

Query: 188 VTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    +P      F         +  G   A   L +F   ++  Y E+RD PA+  TS+
Sbjct: 181 LPAQPLPSLASMGFTDTGLAALGWQAGSTGAQAALAQFLP-RLPLYHEERDFPALDATSR 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G LS RQ      +           GA +WLNEL+WR+FY  ++   P +  G
Sbjct: 240 LSPHLRFGTLSVRQLVRLATDA-------GHEGAQAWLNELVWRDFYHQVLWHRPQLAQG 292

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F P  ++++W  ++    AW +G TG+P++DAAMRQL   GWMHNRLRMI ASFL KD
Sbjct: 293 HAFKPVYDQLDWPGEADHFAAWTEGRTGYPLVDAAMRQLRQTGWMHNRLRMICASFLAKD 352

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE +F   LLD D A+NNGGWQWAASTG D+ PYFRIFNP  Q ++FDP G F
Sbjct: 353 LLLDWRLGEAWFAECLLDFDFAANNGGWQWAASTGCDAQPYFRIFNPVSQSRKFDPDGHF 412

Query: 425 IRHWLPELNNVPTQYIHAPH---SWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           IRH++PEL  +  + IHAP              +YPLP+VDH +     L  Y
Sbjct: 413 IRHFVPELARLDAEAIHAPWLARRLPPGFSPGHDYPLPLVDHARQRERALALY 465


>gi|29467479|dbj|BAC67178.1| cryptochrome 2 [Armoracia rusticana]
          Length = 617

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 141/500 (28%), Positives = 229/500 (45%), Gaps = 29/500 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M+ +   +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  
Sbjct: 1   MTTNKKTIVWFRRDLRIEDNPALAAAAH--QGSVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +  N   ++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSELTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L    I  +SF+  +L  P  I     + +  ++ + K  +   +++ +   P   I
Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMSIESVMLPPPWRLI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +T  V         +   +          +   +  G  NA  IL +F  +++ YY + 
Sbjct: 176 PITAAVEAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
            +      TS LSPYL  G +S R+ +   + +      D   + +     +L  +  RE
Sbjct: 236 SNKVVGNATSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           NP IQG +FDP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPAIQGAKFDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYVKPIVDI 474

Query: 464 KKACHHTLNQYYAAKKQSLL 483
             A           ++  ++
Sbjct: 475 DTARELLTKAISRTREAQIM 494


>gi|171060633|ref|YP_001792982.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
 gi|170778078|gb|ACB36217.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
          Length = 511

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 182/494 (36%), Positives = 245/494 (49%), Gaps = 27/494 (5%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
            T +   LVWLR DLR+ D+ AL+ A  ++  KV   FI           + R+  FI+ 
Sbjct: 27  DTPVDAALVWLRRDLRLDDHAALHHALRSAK-KVWCAFIFDTTILDALPRADRRVEFIHH 85

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            ++++   L   G            D ++ + +      V  +  NR YE   V RD  +
Sbjct: 86  GIVELDGLLRAHGSGLIVRHG----DPLQEIPAIAGALGVQAVHINRDYEPAAVARDAQV 141

Query: 124 EKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-- 180
              L H  I   S  D V+     IL  A   + V+TP++ A ++ L    LR+ PV   
Sbjct: 142 RGALAHAGIALHSHKDQVIFETDEILTMAGSPFSVFTPYKNAWLKKLDGYYLRAYPVQRH 201

Query: 181 --AIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             A+          +P   D  F   D       G      +L  F  E++  Y + RD 
Sbjct: 202 IGALAPVPAALDRGVPTLNDLDFLPTDMAARLHPGASGGATLLLDFL-ERIDRYADTRDF 260

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PAI+G S LS +L  G +S RQ      E  V        GA  WL+ELIWR+FY  ++ 
Sbjct: 261 PAIKGPSYLSVHLRFGTVSIRQLARLAHERMV----GGSRGAEVWLSELIWRDFYHQILH 316

Query: 297 FYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P V     + P  E + W        L  AW +G TG+PIIDAAM QLN  G+MHNRL
Sbjct: 317 HHPRVVTH-CYKPEYEALRWEHGKHAEQLFAAWCEGRTGYPIIDAAMLQLNRTGYMHNRL 375

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+ ASFL KDL +DWR GE YF  QL D DLA+NNGGWQWAASTG D+ PYFRIFNP  
Sbjct: 376 RMVVASFLTKDLGIDWRRGEAYFALQLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPIS 435

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKAC 467
           Q  RFD +G FIR +LP+L ++    IHAP              L  +YP+P+V+H +A 
Sbjct: 436 QSLRFDAEGRFIRRYLPQLADLSRAAIHAPWQAKPLELQAAGVKLGRDYPMPVVEHAEAR 495

Query: 468 HHTLNQYYAAKKQS 481
             TL ++ A K  +
Sbjct: 496 ELTLARFAAVKGAA 509


>gi|186682403|ref|YP_001865599.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
 gi|186464855|gb|ACC80656.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
          Length = 481

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/481 (34%), Positives = 236/481 (49%), Gaps = 18/481 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S  KV+ VF   P    +  ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRISDNTGLAAAKRRS-PKVVGVFCLDPHILERDDVAPVRVTYMIGCLQKLQE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             +Q G            D ++ + +         +F+N   E     RD+ +   L+ +
Sbjct: 65  RYAQVGSQLLILHA----DPVQAIPALAEAINAKAVFWNWDVEPYSQERDRTIINALKEK 120

Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PAI 182
            I       D +L  P  I       Y VYTPF K  I       + +L           
Sbjct: 121 GIEFLNQNWDQILNSPDEIRTGGNSPYTVYTPFWKNWITKPKANPVETLQNVEGLTEAEQ 180

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +        +P   D  F   + +    GE  A   L +F  + +  Y EQR+ PA+ G
Sbjct: 181 EIAKLSGSLTLPSAKDLGFIWDEQLIISPGEAAAQERLEEFTNKAITEYQEQRNFPAVDG 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPS 300
           TSQLS  L  GV+  R  W    E   +   +  +    +W  EL WREFY+H M  +P 
Sbjct: 241 TSQLSAALKFGVIGIRTVWQATIEALENSRSEETAVNIRTWQQELAWREFYQHAMYNFPE 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G  F    +   W  +    QAW +G TG+PI+DAAMRQ+N  GWMHNR RMI ASF
Sbjct: 301 LADG-AFRDTFKNFPWETNEEHFQAWCEGRTGYPIVDAAMRQMNESGWMHNRCRMIVASF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDLL++ ++GE+YFM  L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q ++FDP
Sbjct: 360 LTKDLLINPQLGEKYFMKHLIDGDLSANNGGWQWSASSGMDPKPV-RIFNPASQTQKFDP 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +G +IR W+ EL +V T+Y+            ++ YP PIVDHK   +    +Y   K  
Sbjct: 419 EGEYIRQWVSELRSVDTEYLVT-GKIPPLERHAVGYPDPIVDHKIQQNQFKLRYQQQKNT 477

Query: 481 S 481
           S
Sbjct: 478 S 478


>gi|300765347|ref|ZP_07075330.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           N1-017]
 gi|300513908|gb|EFK40972.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           N1-017]
          Length = 467

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/481 (35%), Positives = 244/481 (50%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQGFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR       +RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + ++  ++F DS L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +      +F +       P+  IGE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISIRTIWQTLQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD  G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|46906833|ref|YP_013222.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
           4b str. F2365]
 gi|46880099|gb|AAT03399.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
           4b str. F2365]
          Length = 467

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/481 (35%), Positives = 245/481 (50%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC  +D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEND--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR       +RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + ++  ++F DS L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +      +F +       P+  IGE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISIRTIWQSLQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD  G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|254828345|ref|ZP_05233032.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           N3-165]
 gi|258600738|gb|EEW14063.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           N3-165]
          Length = 467

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 170/480 (35%), Positives = 244/480 (50%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++    K  + Q      F + +E L           K+++NR        RD+  +   
Sbjct: 57  KQE-VDKTALLQIM----FGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + +  ++F DS L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E       +   G   +  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISVRTIWQALQE------NEATEGRAIFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRM+TASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPTIQ ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTIQSQKFDPTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462


>gi|154250969|ref|YP_001411793.1| deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
           DS-1]
 gi|154154919|gb|ABS62136.1| Deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
           DS-1]
          Length = 475

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/491 (33%), Positives = 244/491 (49%), Gaps = 32/491 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + S  ++W R DLR+        A   +   VI +FI  P         A    +++ SL
Sbjct: 2   SASPAILWFRRDLRLD--ANPALAAAMARGPVIPLFILDPAD----RPGAASRWWLHGSL 55

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + +SL++ G      + S      E L +   +     +F+NR YE + + RDK L+ 
Sbjct: 56  EALGESLARLGAPLILRRGSPS----EILPALTAETDARAIFWNRLYEPHLIGRDKALKS 111

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    +  +SF+ S+L  P  +   +   YKV+TPF ++L Q          P PA + 
Sbjct: 112 ALTAQGIEVESFNGSLLAEPWQVRTQSGDPYKVFTPFWRSLAQM-----PFPAPHPAPKK 166

Query: 185 TGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              ++P        +  +   P         +  GE+ A   L  F  + +  Y E RDI
Sbjct: 167 CAGLSPLPSDDLASWSLRPSKPDWAGGLRATWQPGERAAQSRLAAFIDDAMVGYREARDI 226

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA +GTS+LSP+L  G +SP + W+ + E              ++L EL WR+F  HL+ 
Sbjct: 227 PAAEGTSRLSPHLHWGEVSPHRIWSAV-EAATAAHPSGAEAGRAFLRELAWRDFAHHLLF 285

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P +     +    +   W +D+    AW +G TG+PI+DA MRQL   GWMHNR+RMI
Sbjct: 286 HWPDIAREN-WKSQFDAFPWKEDTAAFTAWTKGETGYPIVDAGMRQLWQTGWMHNRVRMI 344

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFLVK L+VDWR G E+F + L+D DLA N   WQW A +G D+ PYFRIFNP +QG+
Sbjct: 345 AASFLVKHLMVDWRRGAEWFENTLVDADLAVNRASWQWVAGSGADAAPYFRIFNPVLQGE 404

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHT 470
           +FD  G ++R ++PEL  +  ++IH P +  D         L   YP P+VDH  A    
Sbjct: 405 KFDGDGAYVRAFVPELAKLDARFIHKPWAAPDAELSKAGIALGRTYPKPLVDHGHARARA 464

Query: 471 LNQYYAAKKQS 481
           L  Y   + +S
Sbjct: 465 LAAYEQIRNES 475


>gi|254991721|ref|ZP_05273911.1| DNA photolyase [Listeria monocytogenes FSL J2-064]
          Length = 467

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 170/481 (35%), Positives = 243/481 (50%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR        RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAERDEAAQAFF 111

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + ++  ++F DS L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +      +F +       P+  IGE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISIRTIWQSLQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG DSVPYFRIFNPT Q ++FD  G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDSVPYFRIFNPTTQSQKFDSTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
 gi|2499552|sp|Q55081|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
 gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803]
          Length = 488

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/487 (34%), Positives = 243/487 (49%), Gaps = 17/487 (3%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   +   + L+W R DLR+ D+ AL  A     AK++ VF    +  +   ++  +  +
Sbjct: 10  MSDQSDHPLILLWHRRDLRLNDHLALAKA-RQKTAKIVGVFCLDNKILQAEDMAPARVAY 68

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L  +Q    + G      Q     D ++ L           + +    E    +RD
Sbjct: 69  LLGCLQSLQDHYQRLGSELLVFQA----DPVQLLPKLANTLGAHGVTWTLDTEPYAQKRD 124

Query: 121 KLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------VQAD 173
             + + L+ R +   +  D ++  PG +L  A   Y VYTPF K   Q           D
Sbjct: 125 LAVAQALRERGLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKD 184

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVE 232
           L+ L         P+ P  IP+  D  F    P+    GE+ A   L  F    +  Y +
Sbjct: 185 LQGLTPAEKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQRLDWFVAHGLEEYQQ 244

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFY 291
            R+ PA+ GTSQLS  L  GV+SPR  W    E +     +  ++   +W  EL WREFY
Sbjct: 245 NRNFPALDGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFY 304

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +H +  +P++  G P+    ++  W ++    QAW +G TG+PIIDAAM QLN  GWMHN
Sbjct: 305 QHCLYSFPALAQG-PYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHN 363

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI ASFL+KDL+++W+ GE YFM  L DGDLA+NNGGWQW+AS+G D  P  RIFNP
Sbjct: 364 RCRMIVASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKP-LRIFNP 422

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
             Q ++FDP+G +IR WLP+L    T  +         +  S+NYP PIVDH +      
Sbjct: 423 HTQAQKFDPEGEYIRTWLPQLARFDTGDLLT-GKLTPGSRRSVNYPEPIVDHNQQQREFK 481

Query: 472 NQYYAAK 478
            +Y   K
Sbjct: 482 RRYQLVK 488


>gi|254824139|ref|ZP_05229140.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J1-194]
 gi|254932137|ref|ZP_05265496.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
 gi|255521880|ref|ZP_05389117.1| DNA photolyase [Listeria monocytogenes FSL J1-175]
 gi|293583693|gb|EFF95725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
 gi|293593371|gb|EFG01132.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J1-194]
 gi|328475764|gb|EGF46505.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 220]
 gi|332311009|gb|EGJ24104.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott
           A]
          Length = 467

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/481 (35%), Positives = 244/481 (50%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR       +RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNRDETGYGAKRDEAAQAFF 111

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + ++  ++F DS L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +      +F +       P+  IGE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISIRTIWQTLQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD  G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|109898496|ref|YP_661751.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c]
 gi|109700777|gb|ABG40697.1| deoxyribodipyrimidine photo-lyase type I [Pseudoalteromonas
           atlantica T6c]
          Length = 481

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 188/475 (39%), Positives = 261/475 (54%), Gaps = 12/475 (2%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVWLR DLR   N A+  A  N D  V AV+  T EQW  + +S+ +   IY  L+ + 
Sbjct: 3   ALVWLRTDLRSKWNSAIDYAVDNHD-NVTAVYFTTKEQWDTYNLSSHKVALIYQRLVNLH 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K L+++ I  Q  + S +      L   C +  VT ++ N +YE +E +RD  ++  L+ 
Sbjct: 62  KELAERNIELQVIEGSIYQAIPVRLKDICTKIGVTHVYCNAEYEWDERQRDLAVKNILKK 121

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    F D+ L+ P  I+N   + YKV+TP+ K  +   +Q             TG  
Sbjct: 122 IDIPLAMFHDTCLVKPTEIMNLKNEPYKVFTPYFKRWLDTTLQQLPGVPDNHKASDTGLS 181

Query: 189 TPSNIPRFFD--------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             +N     D           +     +P         L  F  E    Y + RDIP++ 
Sbjct: 182 QSANDSIQIDSLLKTNEIEISKEFSTNWPTTAAKITKKLNAFIIEFSPVYPKNRDIPSVD 241

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS++SPYLSIG LSP QC   + +E+ D  +  + GA++W+ E+ WR+FYR++M  +P 
Sbjct: 242 GTSKVSPYLSIGALSPAQCLFHVLQEYGDDALSLEHGAYTWIKEIAWRDFYRYVMYHFPH 301

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V  G PF    +  +W  + H   AWK G TG+PI+DAAM  L   GWMHNRLRMI ASF
Sbjct: 302 VSRGLPFQKHYQHFKWESNQHHFDAWKAGKTGYPIVDAAMIALRETGWMHNRLRMIVASF 361

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
             K LL+ W+  E+YFMSQL+DGD ASNNGGWQW+AS G D+ PYFRIFNPT Q +RFDP
Sbjct: 362 YCKHLLLPWKWAEDYFMSQLIDGDYASNNGGWQWSASVGTDAAPYFRIFNPTTQSERFDP 421

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +G FI+ WLPEL ++  + IH P    D   +   Y LPIV+HK +   T  Q+ 
Sbjct: 422 KGEFIKTWLPELEHLSPKQIHEPSKHCDVQRIG--YALPIVEHKASVMRTKEQFK 474


>gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
 gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
          Length = 475

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 155/482 (32%), Positives = 256/482 (53%), Gaps = 20/482 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              +VW+R D R+ DN AL+ A       V+ V+I     + +  + +    +++ +L  
Sbjct: 3   KTIIVWIRKDFRLVDNPALFHAAKEG--MVVPVYIHD--DYEESSMGSASKWWLHHALND 58

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + S+ +        + +  D     L     Q     +++NR+YE + ++RDK L+   
Sbjct: 59  FKNSIEKIQGTLIVQKGNPKD----VLQKLLHQTNAQDIYWNRRYEPHVLKRDKELQAFF 114

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP--AIRL 184
            + ++  ++F+  +L  P  I       YKV+T + KA  ++ V + ++ +     + + 
Sbjct: 115 SEQQINIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAVKKVTSIQASSKP 174

Query: 185 TGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              ++ S++      P+ + I   +   E+ A+ + + F K K+ +Y + RD PA    S
Sbjct: 175 VESLSVSDLDLLPSIPWDETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEALNS 234

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVC 302
            LSPY + G LS R  ++ L+ +   +     +  A  ++ +LIWR+F   L+  +P   
Sbjct: 235 FLSPYFATGQLSARVLYHYLRTKAEKVSSDAFEQQAEMFIRQLIWRDFAYQLLYHFPHTT 294

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +P     ++ +W   +  LQAWK G TG+P++DA MR+L   G+MHNR+RMI ASFLV
Sbjct: 295 T-EPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMIAASFLV 353

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W+ G  +F   L+D DLA+N  GWQW A +G D+ PYFRIFNP  Q ++FD +G
Sbjct: 354 KHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSEKFDKEG 413

Query: 423 TFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYYA 476
            +I+ WLPEL ++P+ YIH P       L+K +++LN  YP PIVDHK A    L  Y  
Sbjct: 414 EYIKKWLPELKHIPSSYIHKPWEAPADVLEKANVTLNKTYPTPIVDHKAARERALEHYQH 473

Query: 477 AK 478
            K
Sbjct: 474 IK 475


>gi|47093329|ref|ZP_00231098.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b
           H7858]
 gi|226223217|ref|YP_002757324.1| DNA photolyase [Listeria monocytogenes Clip81459]
 gi|47018298|gb|EAL09062.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b
           H7858]
 gi|225875679|emb|CAS04382.1| Putative DNA photolyase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|328467416|gb|EGF38492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 1816]
          Length = 467

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/481 (35%), Positives = 244/481 (50%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR       +RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + ++  ++F DS L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKHENIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +      +F +       P+  IGE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISIRTIWQTLQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD  G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|221134512|ref|ZP_03560817.1| DNA photolyase [Glaciecola sp. HTCC2999]
          Length = 487

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/494 (33%), Positives = 249/494 (50%), Gaps = 28/494 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAK--VIAVFIATPEQWRQHGISARQSHFIYA 63
           +  + ++W R+DLR+ DN ALY A   +     V+ +FI          +      +++ 
Sbjct: 2   SHPLVIMWFRHDLRLNDNPALYRAIELAGEHGTVLPIFIHDTSAPDLAKLGEASQWWLHQ 61

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  S  Q   +FQ        D +  ++S   Q   T + +NR YE  ++ RD  +
Sbjct: 62  SLASLSASTGQHLQLFQ-------GDPLAIIESLINQYDATHVIWNRGYEPWQITRDSHI 114

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVP-- 180
           +  L+  V   S +  +L  P  +L      YKV+TP+ RK  +         S+P    
Sbjct: 115 KATLKDCVEVLSCNGHLLWEPMQVLKKDNTPYKVFTPYYRKGCLTRSAPRYPESIPEHLP 174

Query: 181 ---AIRLTGPVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
               I  T    P  +      P    +  I   +  GEQ A   L  + +E    Y E 
Sbjct: 175 WATRINSTNIFEPLTLDELKLMPSIQWYDTIAAQWQPGEQGAKDRLATYIEEAAGRYRED 234

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           R++PA++GTS LSP+L  G +S    W  +K+ F D        A ++L+EL WREF  +
Sbjct: 235 RNLPAVKGTSLLSPHLHFGEISVNTVWYAIKDAFKD--DPENEHADTYLSELGWREFSHY 292

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L+  +P +   + F        W      L+AW+ G TG PI+DA MR+L   G+MHNR+
Sbjct: 293 LLFHFPHI-QTENFSSKFNVFPWRSSPEELKAWQFGNTGIPIVDAGMRELYQTGYMHNRV 351

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI  SFLVK+LL+DWR GE +F   LLD D+A+N+  WQW A +G D+ PYFRIFNP +
Sbjct: 352 RMIVGSFLVKNLLIDWREGERWFWDCLLDADMAANSASWQWVAGSGADASPYFRIFNPIL 411

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDL--SLNYPLPIVDHKKAC 467
           QG++FD QG +++H+ PEL  +P ++IH P       L   ++    NYP PIVD K + 
Sbjct: 412 QGEKFDKQGDYVKHYCPELRLLPPKFIHKPWEAPSNILQACNIVLGHNYPKPIVDLKVSR 471

Query: 468 HHTLNQYYAAKKQS 481
              L+ +   K+ +
Sbjct: 472 QRALDAFAVTKEAN 485


>gi|290892787|ref|ZP_06555778.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J2-071]
 gi|290557599|gb|EFD91122.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J2-071]
          Length = 467

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/481 (34%), Positives = 245/481 (50%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++N        +RD+  +   
Sbjct: 57  KQEIDKN-----AHVQIMFGEPIECFQQLKDTLPSWDKVYFNLDETGYGAKRDEAAQAFF 111

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + ++  +SF DS L     +     + YK++TP+ K   + + +   +    P      
Sbjct: 112 DEQKIEVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIWKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  +  Y + RD P +  TS LS
Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISIRTIWQELQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP   FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTAKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP P++DHK+     + +Y  +K++
Sbjct: 403 KYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKER 462

Query: 481 S 481
           S
Sbjct: 463 S 463


>gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
 gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
          Length = 481

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/481 (32%), Positives = 228/481 (47%), Gaps = 21/481 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L W R+DLR+ D   L AA       VI VF+          +      +++ SL  + 
Sbjct: 5   SLYWFRHDLRLADLPGLIAAAKAG--TVIPVFVWDEALGGDWSLGGASQWWLHHSLQSLA 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128
             L+  G      +        + L+    +     +F +RQY+      +  ++   + 
Sbjct: 63  ADLNGLGSRLILRRGETSKVIAKLLE----ETGAQNVFASRQYQPWAADTENAVKAVTES 118

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----LRSLPVPAIR 183
                K +  ++L  P +I       +KV+TPF +A ++           L + P    +
Sbjct: 119 AGGDFKRYPGTLLFEPENIRTGGGTPFKVFTPFWRAALKQPAPPQPQPVPLLTSPDEWPQ 178

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                T    P+  ++     + ++  GE  A   LR F    V  Y   RD PA   TS
Sbjct: 179 SDALNTWQLCPKTPNW-ATGWEELWSPGEAGASGALRTFLDSHVDSYGNGRDFPAQPNTS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G +SPRQ W   +           S    +L+E+ WREF  HL+A +P++  
Sbjct: 238 RLSPYLKFGEISPRQIWWTAQNT-KQSNPDEGSSIDKFLSEIGWREFCNHLVAQFPAMP- 295

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            K + P  E   W      L AW+QG TG+PIIDA MR+L   G+MHNR+RM+ ASFL K
Sbjct: 296 DKAWNPKFEYFPWQSHQRNLSAWQQGNTGYPIIDAGMRELWQTGFMHNRVRMVVASFLTK 355

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+ WR+GE++F   LLD DLASN   WQW   +G D+ PYFRIFNP  QG++FD  G 
Sbjct: 356 HLLMHWRVGEQWFWDCLLDADLASNACSWQWVGGSGADASPYFRIFNPIAQGEKFDKAGM 415

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + R W+PEL  +P +Y++ P    +        +L   YP PIVDH+ A    L  Y   
Sbjct: 416 YTRRWVPELAELPDKYLYKPWEAPELTLKAAGVELGTTYPNPIVDHRTARESALEAYATL 475

Query: 478 K 478
           K
Sbjct: 476 K 476


>gi|86605487|ref|YP_474250.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
 gi|86554029|gb|ABC98987.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
          Length = 479

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 170/480 (35%), Positives = 248/480 (51%), Gaps = 17/480 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+ L+W R DLR+ DN AL+ A   S  +V+ VF+  P+  ++  ++  +  F+  +L +
Sbjct: 3   SLVLLWHRRDLRLGDNTALHGAAQRS-PQVVPVFVFDPQLLQRADMAPARVAFLLQALQE 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+  +Q GI   + +     D    L     +     +F+N   +    +++  +   L
Sbjct: 62  LQERYAQMGIPLLWRRG----DPAVELRQLAAELGAQAVFWNEDLDPWARQQESRVRASL 117

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I   S+ D +L  PG +L  A + Y V+TPF +                 +++   
Sbjct: 118 AEAGIPSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRWSSLPKPDPFPIP--KSLQAVS 175

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQL 245
            +    +P   D  F     +   GE  A  +L  FC+  +++ Y   RD PA QGTS L
Sbjct: 176 SLKAQPLPSLADLGFVCNQRIPAAGESVAQGLLEDFCQGLRIFEYGRARDFPAEQGTSLL 235

Query: 246 SPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           SP+L  G +  R+ W    + E      + +S   +W  EL WREFY+H++  +P V  G
Sbjct: 236 SPHLCWGTIGIRRVWQATCEVEAEARSEEAESSLKTWRQELCWREFYKHVLVHWPHVESG 295

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             +    + +EW+      QAW  G TG+PI+DAAMRQLN  GWMHNR RMI ASFL KD
Sbjct: 296 -AYRRAFDALEWDNRQDWFQAWCAGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFM +L+DGDLA+NNGGWQW+A  G D  P  RIFNP  Q  R+DP+G +
Sbjct: 355 LLIDWRWGERYFMQKLVDGDLAANNGGWQWSAGVGTDPRP-LRIFNPATQAARYDPEGEY 413

Query: 425 IRHWLPELNNVPTQYI----HAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR +LPEL  + T  +      P  SW  +      YP PIVDHK        +Y A ++
Sbjct: 414 IRRYLPELAGLDTPALLWVGDDPKGSWALQERRRCGYPDPIVDHKVQQQEFKRRYQAVQQ 473


>gi|3551217|dbj|BAA32807.1| blue-light photoreceptor [Adiantum capillus-veneris]
 gi|3551223|dbj|BAA32810.1| blue-light photoreceptor [Adiantum capillus-veneris]
          Length = 637

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 142/489 (29%), Positives = 229/489 (46%), Gaps = 27/489 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +VW R DLR+ DN AL AA       V+ +FI TPE+  Q         ++  SL+
Sbjct: 1   MACTIVWFRRDLRVEDNPALVAAVRAG--TVVPLFIWTPEEEGQFLPGRVSRWWLKQSLI 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           Q+ +SL+  G      +      +I  L     Q   T++F+N  Y+   + RD  +++ 
Sbjct: 59  QLHQSLTSLGSPLIMRRA---QSAISVLSQIIKQTGATQVFFNHLYDPVSLVRDHKVKQE 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------V 179
            LQ  V   +F+  +L  P  I +   + +  +  F    +   ++ +   LP       
Sbjct: 116 LLQAGVTVTTFNADLLYEPWEINDEQGRPFTTFAGFWSLCMDMAIEPEAPLLPPKRITKW 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P I  T P+    +    +      +   +  G  NA   L  F    +  Y   R    
Sbjct: 176 PGIAATSPIEDLELENESEKGSNDLLARAWAPGWANADRALEAFVSGPLMEYASNRQKVD 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSP+L  G LS R+ ++ ++ + V  + +  + A      +L  +  RE+ R+L
Sbjct: 236 SATTSLLSPHLHYGELSVRKVFHSVRMKQVLWVKEGNADAEESVNLFLRSIGLREYSRYL 295

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +  +   +   W  D    + W+QG TG+P++DA MR+L   GW+HNR+R
Sbjct: 296 CFNFP-FTHERSLLSNLKFFPWRNDEGYFKVWRQGRTGYPLVDAGMRELWATGWLHNRIR 354

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D    +RI NP ++
Sbjct: 355 VIVSSFFVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELYRIDNPQLE 414

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH 468
           G R+DP G ++R WLPEL+ +P+++IH P             +L  NYP PIV+   A  
Sbjct: 415 GYRYDPCGEYVRRWLPELSRLPSEWIHHPWDAPPNVLRAAGIELGSNYPRPIVEVAAARE 474

Query: 469 H---TLNQY 474
                L + 
Sbjct: 475 RLEQALAEM 483


>gi|330825562|ref|YP_004388865.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
           K601]
 gi|329310934|gb|AEB85349.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
           K601]
          Length = 487

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 181/488 (37%), Positives = 254/488 (52%), Gaps = 31/488 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASL 65
            S  LVWLR DLR  D+ ALY A      +V   F+       +      R+  FI+ASL
Sbjct: 2   ASTALVWLRRDLRCDDHAALYHALRR-YPRVYCAFVFDTGILDELPSRQDRRVEFIHASL 60

Query: 66  LQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           L++ + L Q        G             ++E +     +  V ++  NR YE   + 
Sbjct: 61  LELHQGLQQLAARSGAPGGGLIVRHGP----ALECIVQLAQELGVQEVLANRDYEPQAIA 116

Query: 119 RDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD+ + + L    I  S + D VLL    +L    + Y V+TP+++A +Q L    L+  
Sbjct: 117 RDQSVAQALHALGIAFSDYKDQVLLDRDEVLTQQGRPYSVFTPYKRAWLQRLDDFQLKPY 176

Query: 178 PV--PAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVE 232
           PV   A  L  P     +P   D  F   +      P G   A  +L+ F   ++  Y E
Sbjct: 177 PVDRYAHHLAPPPADERLPTLSDLSFGPTNLRELPLPSGMSGAQRLLQDFVP-RMAAYQE 235

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD P  +G S LS +L  G +S R    +L         +   GA +WL+EL WR+FY 
Sbjct: 236 ARDYPGRKGVSYLSVHLRFGTVSIR----QLAALAAKQAAEGCGGAQTWLSELAWRDFYF 291

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            ++  +P V   + F P  ++++W++   L QAW +  TG+P++DAAM QL   G+MHNR
Sbjct: 292 MILWHHPQVVT-QSFKPEYDRVQWDEAPELWQAWCEARTGYPLVDAAMHQLLQTGYMHNR 350

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+ ASFL KDL +DWR GE +F   L D DLA+NNGGWQWAASTG D+ PYFRIFNP 
Sbjct: 351 LRMVVASFLTKDLGIDWRRGERFFAQHLNDYDLAANNGGWQWAASTGCDAQPYFRIFNPI 410

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466
            Q +RFDP GTFIR +LPEL  VP  +IH P +            L ++YP+P+VDH +A
Sbjct: 411 TQSQRFDPDGTFIRRYLPELVGVPDAHIHFPAAMKPAALAACGLRLGVDYPVPVVDHARA 470

Query: 467 CHHTLNQY 474
              TL ++
Sbjct: 471 RQRTLMRF 478


>gi|297585056|ref|YP_003700836.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
 gi|297143513|gb|ADI00271.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
          Length = 474

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 173/476 (36%), Positives = 246/476 (51%), Gaps = 22/476 (4%)

Query: 10  HLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            +VW RNDLR+ D+ A+  A     + D K++ VF    + +        +  + + +L 
Sbjct: 6   TVVWFRNDLRLNDHPAIDEALTFAEDHDTKILCVFHIHDDLFSHLHT---RHDYFFQTLR 62

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
                L  + I  ++      +     L  Y     V  +F ++ Y      RD+ +   
Sbjct: 63  HFSDDLKSRNIAIRFLYGEVTEAFASLLKEYS---GVQAVFASKDYTSFATERDRTVRTL 119

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            + R I       + L  P SI+      YKVYTP+ K  ++  V+  L +     +R  
Sbjct: 120 FEERNIRFTLTVSNHLQEPSSIMKDDGTPYKVYTPYSKQWLKKPVRG-LLAGHEKKLRER 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 N  +  D+   +      +GE +A   L +F  +++ +Y E RD PA+ GTS+L
Sbjct: 179 TCEVAMNRGKLDDFLASSDRTWQALGEDHAHERLEQFVTDRLTHYGESRDFPAVAGTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  GVLS  Q ++        L  K    A +++ EL WR+FY  +   + ++   +
Sbjct: 239 SPYLKTGVLSVAQVYHAA----YPLFEKGDDAAVTFIKELAWRDFYTMIHYHFENL-RNQ 293

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F      + WN+D  LL+ WKQG TGFP+IDAAMRQLNT GWMHNRLRM TASFL KD 
Sbjct: 294 EFQEKYRTLSWNEDDELLEYWKQGQTGFPLIDAAMRQLNTTGWMHNRLRMATASFLTKDY 353

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YF  +L+D D ASN GGWQWAAS G D+VPYFR+FNP  Q KRFDP+GTFI
Sbjct: 354 RIDWREGERYFAEKLIDYDEASNTGGWQWAASVGTDAVPYFRVFNPVRQSKRFDPEGTFI 413

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           R ++PEL +VP   IH P    +         +  +YPLP VDH +A    +  + 
Sbjct: 414 RQYVPELKDVPASSIHEPAKLSEAKQKEYRVRIGTDYPLPTVDHSEARKAAITMFE 469


>gi|189346874|ref|YP_001943403.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
 gi|189341021|gb|ACD90424.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
          Length = 473

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/484 (32%), Positives = 232/484 (47%), Gaps = 28/484 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R DLR+ DN +LY A       V+ V+I          +      +++ SL  + 
Sbjct: 6   TIHWFRQDLRLEDNPSLYYAALKG--SVLPVYILDDRNAGDFRMGGANRWWLHHSLESLN 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL  +  +          D +E L +       TK+++NR YE   + RD  L+ +L+ 
Sbjct: 64  RSLQGRLTLL-------MGDPLEILPALAASTGATKVYWNRCYEPWRISRDTRLKHKLRE 116

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLTGP 187
           + I  +S++ S+L  P  +       YKV+TPF RK  +          LPV     + P
Sbjct: 117 QGITAESYNGSMLWEPWEVHKSDGTPYKVFTPFYRKGCLSAASPRMPLPLPVKLDCPSPP 176

Query: 188 VTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +      P     + ++P + IGE  AL  L  F K  +  Y E RD PA    S
Sbjct: 177 EESLPLEALGLLPRIRWDRQLEPHWTIGENGALERLAIFLKHGLPGYREGRDFPARPNVS 236

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP L  G +SP Q W+        +          + +EL WREF   L+   P +  
Sbjct: 237 RLSPSLHFGEISPNQAWHGAIAAGSGI------DLDHFQSELAWREFSYSLLYHNPGLPE 290

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            K      ++  W ++   L  W+QG TG+PI+DA MR+L   G+MHNR+RM+  SFLVK
Sbjct: 291 -KNLQKSFDRFPWEENPAALMRWQQGLTGYPIVDAGMRELWQTGYMHNRIRMVAGSFLVK 349

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+ W  GE +F   L D DLA N+  WQW A  G D+ PYFRIFNP  QG++FD  G+
Sbjct: 350 NLLLHWHEGESWFRDCLADADLAINSASWQWIAGCGADAAPYFRIFNPVTQGQKFDADGS 409

Query: 424 FIRHWLPELNNVPTQYIHAPH----SWLDKNDL--SLNYPLPIVDHKKACHHTLNQYYAA 477
           + R +LPEL  +P +Y+ +P     S L    +     YP PIVD K +    L  Y   
Sbjct: 410 YTRRYLPELARLPDRYLFSPWEAPVSVLADAGIATGKTYPEPIVDLKSSRRQALEAYALT 469

Query: 478 KKQS 481
           +  S
Sbjct: 470 RNHS 473


>gi|27904772|ref|NP_777898.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46396630|sp|Q89AJ9|PHR_BUCBP RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|27904170|gb|AAO27003.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 478

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 207/475 (43%), Positives = 304/475 (64%), Gaps = 5/475 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V+L+W RNDLR++DN AL+ +C N+ + V+A+FIATP+QW +H ++ ++   IY +++
Sbjct: 1   MNVNLMWFRNDLRLSDNSALHFSCRNNASTVLALFIATPKQWERHCLAPKKKMLIYKNIV 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++K +++ GI+F Y++ +++ +S  ++  +C   +VT +F+N +YE  E +RDK+++K+
Sbjct: 61  ALKKKITELGIIFYYYESTDYLESTNYIIEFCKIHKVTSIFFNLEYEFYERQRDKIIKKK 120

Query: 127 LQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-L 184
           L+   I  + F DSVL+ PGSI N   +MYK ++ F+   I+ L        P P  + L
Sbjct: 121 LKKNNIIINCFHDSVLITPGSIKNSYGKMYKKFSYFKYKCIKQLQLNIPSCFPKPQNKNL 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               +       F    +  D  +FPIGE      L+ F K     Y   ++I  +  TS
Sbjct: 181 HDHYSLDFTIPIFHTYLEKFDANIFPIGEDIVYEKLKFFIKYAFNKYNFDQEIFELNSTS 240

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS +LSIGV+SPRQC   L +E+ D++ K +     W+NEL+WREFY+HL+ FYP++  
Sbjct: 241 MLSAHLSIGVISPRQCVTLLFKEYPDIIHKLEE--CKWINELLWREFYQHLLYFYPNIGQ 298

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +    W  +I+W+ + + L  WKQG TG+PIIDA MRQL  +GW+ NRLRMITASFLVK
Sbjct: 299 NQSLYHWENRIKWDNNLYYLNLWKQGNTGYPIIDAGMRQLKQLGWISNRLRMITASFLVK 358

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR GEEYFMSQL+DGD ASNNG WQW AS G DS+PYFRIFNP +Q K+FD    
Sbjct: 359 NLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASVGTDSMPYFRIFNPMLQSKKFDINAK 418

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR ++PEL+NV T  IH P      N +   YP PI+++  +   TL  +  AK
Sbjct: 419 FIRKYIPELSNVSTYNIHNPCDNNKTNKIHSKYPQPIINYYHSKKKTLLVFKHAK 473


>gi|160902458|ref|YP_001568039.1| deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
 gi|160360102|gb|ABX31716.1| Deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
          Length = 462

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 157/470 (33%), Positives = 238/470 (50%), Gaps = 26/470 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLL 66
            + L   R DLR+ DN +L  A  + + +VI  FI    Q + +   S     F+ A L 
Sbjct: 16  KIGLHIFRRDLRLEDNTSLIEALQSCE-RVIPAFIFDDRQIKDNDYKSDNAVQFMIACLK 74

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++   L Q      + +        + ++S      +  +F N+ Y     +RD  ++  
Sbjct: 75  ELNDQLHQLNARLYFFEGLT----AKVVESLIKTLGIEAVFVNKDYTPFSKKRDNEIKAI 130

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            +  RV  K   D +L  P  +L      Y  +T F K   +  V+   ++        T
Sbjct: 131 CERERVDFKEHFDVLLHEPTEVLKDNGMPYIKFTDFLKKSKKIDVREPQKN--KFKNYFT 188

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             ++ S   +   +P Q  + +   G +  L  + +  K  +  Y E R+ P+I GT++L
Sbjct: 189 EEISSSIALQVDKFP-QNENLILKGGRKEGLSYIERIVK--LKNYSETRNTPSIDGTTKL 245

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G +S R+ + ++ E F              + +L WR+F+ H++  +P V +G 
Sbjct: 246 SPHLKFGTVSVREVYGKVNENF--------GNEHEIITQLHWRDFFTHILYHFPHV-LGN 296

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F     +I+W  D    +AW  G TG+PI+DA MRQLN  GWMHNR+RMIT SFLVKDL
Sbjct: 297 SFKEKYNQIQWENDVDKFKAWCTGRTGYPIVDAGMRQLNLTGWMHNRVRMITGSFLVKDL 356

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE+YF  +L+D D A NNG WQW ASTG D+ P+FRIFNP +Q ++FDP+  +I
Sbjct: 357 HIDWRWGEKYFAQRLVDYDPAINNGNWQWVASTGCDAQPFFRIFNPILQQQKFDPECNYI 416

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           + WLPEL N+  + IH  +   D     ++YP PIVDHK A       Y 
Sbjct: 417 KTWLPELTNLNLEQIHTLNIPKD-----IDYPTPIVDHKVASEKAKKLYK 461


>gi|331005568|ref|ZP_08328940.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
 gi|330420618|gb|EGG94912.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
          Length = 480

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 185/479 (38%), Positives = 261/479 (54%), Gaps = 23/479 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVWLRNDLR+ DN ALY A H  D     V+  TPEQWRQH  +  +       L+ V
Sbjct: 1   MNLVWLRNDLRLEDNPALYHATHQGDT--CCVYSITPEQWRQHDDAPAKIALWRERLIAV 58

Query: 69  QKSLSQKGIVFQYHQ-----CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           Q  L +  I  +  +      S + +    L     +     +++N +Y +NE +RD+ +
Sbjct: 59  QHELREHNIPLKLIRFTNDNESTYSNMPAALLDLANRIDAHSIYFNNEYPLNEKQRDRHV 118

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            +           +D  V++ PG++       YKV+TPF +   +   +  L  +  PA 
Sbjct: 119 SELFIYEGKQINRYDGDVVMRPGTVKTQQDATYKVFTPFSRQWHKLAGENQLVMVGKPAT 178

Query: 183 RLTGPVTPSN----IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           +    ++            D P++    ++P   +     L +F   +   Y E RDIP+
Sbjct: 179 QNASLLSLDEDVKTQWLVEDTPYR--QDLWPAKTEAIHQRLHQFAANRASNYKEMRDIPS 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS LSPYL+ G +S RQC + +++   +           W+ ELIWREFYRHL+  Y
Sbjct: 237 VNGTSTLSPYLACGAISVRQCISAIRQNVEEWRSNQ------WITELIWREFYRHLIDSY 290

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +   + FI   + I WN D     AW +G TG+PI+DAAM+QL   GWMHNRLRM+TA
Sbjct: 291 PHLSRSENFISLVKPIPWNNDEENFLAWCEGRTGYPIVDAAMKQLVQTGWMHNRLRMVTA 350

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           +FL K LLVDWR GE +FM  LLDGD ASNNGGWQWAASTG D+ PYFRIF+P  Q +RF
Sbjct: 351 AFLTKLLLVDWRKGEAFFMQHLLDGDYASNNGGWQWAASTGADAAPYFRIFSPERQSERF 410

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           D +G FI+  LPEL ++  + IH P+S   K   +  Y  P+VD+K A    L +Y  A
Sbjct: 411 DKEGVFIKKLLPELCSLTKKTIHTPNSEQRK---TYGYIEPVVDYKWARQRALEEYATA 466


>gi|296116904|ref|ZP_06835507.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976544|gb|EFG83319.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 513

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/487 (32%), Positives = 232/487 (47%), Gaps = 21/487 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A    +  +VW RNDLR++DN AL  A   S   V+ +F+  P+  R+H + A    +
Sbjct: 26  MPAD---APVIVWFRNDLRLSDNPALSHAVA-SGRPVLCLFVHDPQHAREHALGAAAQWW 81

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L  +   L++ G V          D++  +     Q    ++ +NR+Y+      D
Sbjct: 82  LDGGLRALHADLARMGAVLHV----ACGDALALVPRMAAQAGAAEVVWNRRYDPLGRETD 137

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L+H  VI  SF   VL  P ++   A   ++V+T + +A   +         P 
Sbjct: 138 TAIKATLKHAGVIAHSFAAGVLYEPWTVRTRAGDAFRVFTAWWRAARASGEPLPPLPAPG 197

Query: 180 PAIRLTGPVTPSNIPRFFD---------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P          D              +   +  GE  A   L  F    +  Y
Sbjct: 198 HVHAAVSPGAWEGCCVGIDALRLVPVSPDWAGGLREAWQPGEAQARDRLHHFVDGGLGGY 257

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWR 288
            + RD P +  TS+LSP L  G +SPRQ W+               +     +L+EL WR
Sbjct: 258 ADARDRPDLPATSRLSPDLRFGHISPRQAWHAAVAAVRGGAAGGMGEQDLEKFLSELGWR 317

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +F   L+   P + +   F    + + W  D+  L AW+QG TG+PI+DA MRQL   GW
Sbjct: 318 DFAVSLLYAQPEL-VSCNFRTEFDAMPWRNDARDLCAWQQGRTGYPIVDAGMRQLWRTGW 376

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RMI ASFL K LL DWR+GE +F   L+D D+ASN   WQW A  G D+ PYFR+
Sbjct: 377 MHNRVRMIVASFLTKHLLCDWRMGEAWFRDTLVDADIASNVINWQWVAGCGVDAAPYFRV 436

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           FNP +Q +RFDP GT++R W+PEL  VPT  +HAP +        + YP PIVD +    
Sbjct: 437 FNPVLQARRFDPDGTYVRRWVPELAGVPTSCVHAPWTCDPAIRARVAYPSPIVDLQGGRA 496

Query: 469 HTLNQYY 475
             L  + 
Sbjct: 497 RALAAWK 503


>gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
 gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
          Length = 468

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/477 (34%), Positives = 238/477 (49%), Gaps = 17/477 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSVH+ W R DLR TDN +L AA       VI  FI  P        S  +  F+  SL 
Sbjct: 1   MSVHVHWHRRDLRATDNHSLSAAAETG--SVIPAFIFDPAVLE--FASPPRVAFMLESLS 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +++    ++G               E L     +    ++ +NR Y     +RD+ + + 
Sbjct: 57  ELRAWYRERGGDLVVATGDPR----EELPRIAREHGAERVSWNRDYSGLASKRDEEVREA 112

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    +   S DD++L  PGSI     + Y VY+ F K       ++ + +   P     
Sbjct: 113 LTDAGIEATSVDDALLFEPGSITTQQGETYAVYSYFWKKWRDREKESPVSA---PDGEQL 169

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             V+  ++P      F   +   P  G + A   L  FC + +Y Y +QRD PA   TS 
Sbjct: 170 ASVSGDSLPSQEALGFDDPEATIPDAGMEAARRRLETFCADPIYRYADQRDDPAADATSG 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFYPSVCM 303
           LSP+L  G +  R  +  L     +   +  + +   + ++L WR FY H++   P    
Sbjct: 230 LSPHLKWGTIGIRTVYEALDRAKSEAPDEAAADSCEEFESQLAWRAFYAHVLDTNPHTVT 289

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              +  +   I+W  D+  LQAWK G TG+PI+DA MRQL    +MHNRLRMI ASFL K
Sbjct: 290 AN-YRSYENPIQWQTDAAALQAWKDGKTGYPIVDAGMRQLRAEAFMHNRLRMIVASFLTK 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL++DWR G  +F  +L D D AS+ GGWQWA+ TG D+ PYFRIFNP  QG+R DP   
Sbjct: 349 DLMLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGERHDPDAE 408

Query: 424 FIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +IR ++PEL +VP + IH   +    ++  ++  YP PIVDH       L+ + AA+
Sbjct: 409 YIRTYVPELADVPAETIHEWVALEPDERASVAPEYPDPIVDHAARREAALDMFEAAR 465


>gi|294341149|emb|CAZ89550.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As]
          Length = 497

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 166/497 (33%), Positives = 244/497 (49%), Gaps = 29/497 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIA-VF---IATPEQWRQHGISARQ 57
            A   + + LVWLR DLR+ DN AL+AA    D   +A VF   I  P   ++   + R+
Sbjct: 12  SAVEKLPLGLVWLRRDLRLHDNAALHAALRACDKVALAFVFDRDILDP-LLQRGLQADRR 70

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI A++ ++  +L + G        S      E + +   +     +F  R  E   +
Sbjct: 71  VEFILAAVAEIDAALREHGAALIVRHASAR----EAIPALAAELGAQTVFCGRDDEPEAL 126

Query: 118 RRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD  +E+ L+      ++  + ++     +L    + Y V+TP+R A +        + 
Sbjct: 127 ARDAAVERALRQDGRALRTVKEHMIFERDEVLTAQGKPYSVFTPYRTAWLARYAAQPQQP 186

Query: 177 L----PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYY 229
           +        +          +P   +  F   +      P+G   A  ++  F   ++  
Sbjct: 187 VDSAVTSARLAALPAALRQPLPTLSELGFAPSNLHALKLPLGASGAAALVDDF-SRRIDD 245

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RD PA +G S LS +L  G +S R+                  GA  WL+EL+WR+
Sbjct: 246 YDQARDYPARKGPSYLSVHLRFGTVSVRELVAMAWARQQA----GSEGARVWLSELVWRD 301

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FY  ++  +P V +   F P  ++I+W  D     AW +G TG+P++DAAMRQ+N  G+M
Sbjct: 302 FYFQILFHHPHV-VNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQTGYM 360

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRM+ ASFL KDL +DWR GE YF   L D DLA+NNGGWQWAAS+G D+ PYFRIF
Sbjct: 361 HNRLRMVVASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYFRIF 420

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463
           NP  Q ++FD  G FIR ++PEL    ++ IHAP              L   YP+PIV H
Sbjct: 421 NPVAQSEKFDAGGDFIRRYVPELAQFASKDIHAPWKAPAALLQAAGVRLGSTYPVPIVRH 480

Query: 464 KKACHHTLNQYYAAKKQ 480
             A   TL +Y   K Q
Sbjct: 481 DLARAETLERYAVVKAQ 497


>gi|73540409|ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
           JMP134]
 gi|72117822|gb|AAZ60085.1| Deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
           JMP134]
          Length = 525

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 172/491 (35%), Positives = 247/491 (50%), Gaps = 28/491 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR TD+ AL+ A  +   +V  VF+   +             R+  FI ASL
Sbjct: 36  GLVWFRRDLRSTDHAALHYALKHC-REVWCVFVFDRDILDPLLARGLKGDRRVDFIRASL 94

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +++  +L   G           D +   + +   +  V  +F N  YE + V RD  +  
Sbjct: 95  IELDATLRAAGGGLIVMN----DSAASAIPALARELGVQAVFANHDYEPDAVARDAAVRD 150

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L     +  +F D V+     IL    + + V+TP++ A ++ +   DLR  P+     
Sbjct: 151 SLAGDARVLFTFKDQVIFERDEILTSQGKPFAVFTPYKNAWLKTIQPFDLRPYPIEPYLH 210

Query: 185 TGPVTPSN----IPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                PS     +P   D  F   +      P G      +  +F   ++  Y  +RD P
Sbjct: 211 ALAPLPSKRLVPLPSLEDLGFAPSNLAEVAMPTGSSGGQALFEEFTS-RMGDYGRRRDYP 269

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S R          +       +GA +WL+EL+WR+FY  ++  
Sbjct: 270 ALRGPSYLSVHLRFGTVSIRTLARAAHGAVL-RGGADSAGAATWLSELVWRDFYFMILHH 328

Query: 298 YPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +P V  G+ F P  + I W          ++W+   TG+P++DAAM Q+   G+MHNRLR
Sbjct: 329 HPRVAAGEAFHPAYDIIRWRDGETGDRYFESWRDAATGYPLVDAAMLQIRQSGYMHNRLR 388

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+TASFLVKDL VDWR GE YF  QL D D A+NNGGWQWAASTG D+ P+FRIFNP  Q
Sbjct: 389 MVTASFLVKDLGVDWRRGEHYFADQLNDFDFAANNGGWQWAASTGCDAQPWFRIFNPVTQ 448

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACH 468
            ++FDPQG FIR +LP+L  +P +Y+HAP +            L  NYP P+V H  A  
Sbjct: 449 SEKFDPQGRFIRKYLPQLAALPDKYVHAPWTAPQDVLLAAGVRLGENYPRPLVQHDVARK 508

Query: 469 HTLNQYYAAKK 479
            TL +Y   K+
Sbjct: 509 ETLERYAVVKE 519


>gi|148271713|ref|YP_001221274.1| deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829643|emb|CAN00559.1| Deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 508

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 250/501 (49%), Gaps = 32/501 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    +VWLR+DLR+ DN AL+AA    +  ++ +++   E      +      +++
Sbjct: 17  AEEAHGPSIVWLRDDLRVADNPALHAAVERGE-PIVVLYVLDEESDGIRPLGGAARWWLH 75

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL ++ +SL + G      +      + + +D    +     + +NR+Y   E+  D  
Sbjct: 76  MSLSRLAESLRELGSDLVLRRGK----AADVVDDLVREIGAGAVLWNRRYGGAEIAVDTA 131

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           ++K L  R +  +SF  S+L+ P ++ N   + ++VYTPF KA  +   +   + LP P 
Sbjct: 132 IKKDLGDRGLDVRSFQGSLLVEPWTVTNKQGEPFRVYTPFWKAAQER--EEPRKPLPAPK 189

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP--------IGEQNALHILRKFCKEKVYYYVEQ 233
             L  P           +      P +          GE   L  L  F   ++  Y  Q
Sbjct: 190 -ELDAPREAPRSDDLDGWGLLPTKPDWAAGLRESCDPGEAAGLQRLEDFVHHELEDYAAQ 248

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA   TS+LS YL  G +SP Q W+R++      +   +  A  +L+EL WREF  H
Sbjct: 249 RDEPAAMTTSRLSAYLRWGEVSPFQVWHRIQRTRGKKVGGDEVNATKFLSELGWREFSYH 308

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           L+   P +   + F+P  +   W++     L AW++G TG P++DA MR L   G +HNR
Sbjct: 309 LLYHQPDLAT-RNFVPRFDAFPWDEPTDETLGAWQRGETGVPLVDAGMRALWKDGHLHNR 367

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RM+ ASFL+K+LL+DWR GE++F   L+D D A+N   WQW A +G D+ PYFR+FNP 
Sbjct: 368 VRMVVASFLIKNLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFRVFNPV 427

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-------------YPLP 459
           +QG++FDP G +IR ++PEL + P   +H P   +     S               YP P
Sbjct: 428 LQGQKFDPSGEYIRSYVPELAHAPRDVVHEPWKAMGDLVASAEDGADDSDDGGLAAYPAP 487

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           IVD K++    L  Y   K +
Sbjct: 488 IVDLKESRQRALAAYDEIKDR 508


>gi|325110039|ref|YP_004271107.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
           DSM 5305]
 gi|324970307|gb|ADY61085.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
           DSM 5305]
          Length = 502

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/492 (33%), Positives = 243/492 (49%), Gaps = 21/492 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A  +    LVWLR DLR+ DN ALYAA  N+   VI V++  P +          S +
Sbjct: 18  LPADLSEGPVLVWLRQDLRLRDNPALYAAA-NTGRSVIVVYLL-PNRNDDWFPGGAASWW 75

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L ++         S    +   +       +   +F+NR YE  +  RD
Sbjct: 76  LHHSLDALTTNLHKRHHQLILRSGS----AATEMTRLAEDCKAAAVFWNRCYEPADRERD 131

Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           +    +L       +SF  S+L+ P ++       Y+V+TPF KA    +  A     P 
Sbjct: 132 EKTADKLAQAGYQVRSFPGSLLIEPWTLSTKQGDPYQVFTPFWKAARSRVEFASPLPAPE 191

Query: 180 PAIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                        +  +   P           +  GE  A    +KF  + +  Y  +RD
Sbjct: 192 SLKTPDQWPDSEELADWKLLPTLDWADEFPERWKPGEDAAHAAWQKFLDDNIAEYGTERD 251

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWREFYR 292
           +P+  GTS+LSP+L  G +SPRQ +    E+        +S       +L+E+ WREF  
Sbjct: 252 VPSHHGTSRLSPHLHYGEISPRQIYAEAVEKMNRKQTATESFEKNVNVYLSEIGWREFGY 311

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P      P         W      L+AW+QG TG+PI+DA MR+L   GWMHNR
Sbjct: 312 HVLYHFPHTPE-NPLREKFADFNWETKKSWLKAWQQGQTGYPIVDAGMRELWRTGWMHNR 370

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RMI ASFL KDL + W  G ++F   L+D DLA+N  GWQWA+  G D+ PYFR+FNPT
Sbjct: 371 VRMIVASFLTKDLRIHWLEGSKWFWDTLVDADLANNTLGWQWASGCGADAAPYFRVFNPT 430

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHKKA 466
            Q ++FDP+G ++R W PEL ++P +Y+H    AP S L+K    L  +YP PIVDH + 
Sbjct: 431 RQSEKFDPKGNYLRRWCPELADLPDKYLHCPADAPESVLNKAGVRLGKDYPEPIVDHAEQ 490

Query: 467 CHHTLNQYYAAK 478
               L ++   K
Sbjct: 491 RDAALAEWEKVK 502


>gi|83594235|ref|YP_427987.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
           ATCC 11170]
 gi|83577149|gb|ABC23700.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
           ATCC 11170]
          Length = 478

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/492 (32%), Positives = 233/492 (47%), Gaps = 33/492 (6%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYAS 64
           M++  LVW R+DLR+ DN AL AA  +S A VI  ++        H  +      ++  S
Sbjct: 1   MTIPVLVWFRDDLRLADNPALCAAL-DSGAPVIPFYLLDDSTSDGHRPLGGATRWWLGRS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + +S++Q+G      +     +++  +     +     LF NR Y ++ +R D L  
Sbjct: 60  LTSLAESIAQRGGRLVLRRG----EALSAVPELAAETDAAALFANRLYGMDSLRDDDLFM 115

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +  + FD  +L  P ++     + ++V+TPF K L   L      + P     +
Sbjct: 116 VLRVAGLTVRLFDSGLLHRPEAVTTKTGRPFRVFTPFWKTLSATLDPGLPLAAPDSFPPV 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             P  P       D+  +   P         +  GE  A   L  F    V  Y   RD 
Sbjct: 176 DDP--PPASDSLADWSLEPTTPDWAGGLRDTWQPGEAGAQARLEAFFNGPVADYASGRDR 233

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P    TS+LSP+L  G +SPRQ W   +         P  G  ++L EL WREF  HL+ 
Sbjct: 234 PDKPLTSKLSPHLRFGEISPRQVWTAARHH------PPGGGMDAFLRELGWREFCHHLLF 287

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
             P++   +P         W +       L AW+ G TG+PI+DA MR+L   GWMHNR+
Sbjct: 288 QAPTMAE-EPLKAEFLAFPWTEAKEIGPALAAWQSGETGYPIVDAGMRELWHTGWMHNRV 346

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL+KDLL+ W+ GE +F   L+D   A+N  GWQW A  G D+ P+FRIFNP  
Sbjct: 347 RMIAASFLIKDLLIPWQHGERWFWDTLVDACPANNAAGWQWVAGCGADAAPFFRIFNPVT 406

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKAC 467
           QG+RFDP+G ++R WLPEL ++P+  IH P              L   YP P++DH  A 
Sbjct: 407 QGERFDPEGAYVRRWLPELADLPSSLIHRPWEAPPLILRQAGVTLGKTYPPPLIDHAHAR 466

Query: 468 HHTLNQYYAAKK 479
              L       +
Sbjct: 467 VRALEALAVVNR 478


>gi|29467475|dbj|BAC67176.1| cryptochrome 2 [Armoracia rusticana]
          Length = 617

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 138/500 (27%), Positives = 227/500 (45%), Gaps = 29/500 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M+ +   +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  
Sbjct: 1   MTTNKKTIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +  N   ++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSELTLIKTHN---TVSAILDCIRITGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L    I  +SF+  +L  P  I     + +  ++ + K  +   +++ +   P   +
Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLM 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            ++            +   +          +   +  G  NA  IL +F ++++  Y + 
Sbjct: 176 PISTAAEAVWACSIEELGLENETEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R+ +   + +      D   +    A  +L  +  RE
Sbjct: 236 SKKVVGNSTSLLSPYLHYGEISIRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDTDVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLR+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRLRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           NP IQG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474

Query: 464 KKACHHTLNQYYAAKKQSLL 483
             A           ++  ++
Sbjct: 475 DTARELLTKAISRTREAQIM 494


>gi|194334030|ref|YP_002015890.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
           271]
 gi|194311848|gb|ACF46243.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
           271]
          Length = 477

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 152/487 (31%), Positives = 243/487 (49%), Gaps = 28/487 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              + W R DLR+ DN AL+ A       V+ V+I          + +    +++ SL+ 
Sbjct: 4   KTVICWFRQDLRLEDNPALFVAAEEG--YVLPVYILDDSSPGTWQMGSATRCWLHHSLVS 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +S   K  +F+        + +E L +   Q +  K+ +NR YE   ++RD+ ++  L
Sbjct: 62  LNRSFDGKLGIFR-------GEPLEILKTLARQHKAEKIVWNRCYEPWRMKRDQGIKATL 114

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLP---VPAI 182
           Q   +   SF+ S+L  P  +L      Y+V+TPF R+  +  L        P   + A 
Sbjct: 115 QAEGIEVSSFNGSLLWEPHEVLKQNNTPYRVFTPFFRRGCLNALPPRTPLPAPQRMLMAD 174

Query: 183 RLTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +   ++  ++      P+ + +   + +GE +A   L +F  + +  Y E RD P    
Sbjct: 175 TIDNSISVQDLNLLPSIPWDSQLISHWSVGENSARQSLLRFLDQGLNGYKEGRDFPGQNH 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S+LSP L  G LSP   W      +             +L+EL WREF   L+     +
Sbjct: 235 VSRLSPALHFGELSPNTVW------YEAKRCGSGQDLDHFLSELGWREFAYTLLYHNHDM 288

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K      +   W  +   L  W+QG TG+P++DA MR+L   G+MHNR+RMIT SFL
Sbjct: 289 PE-KNLQSAFDAFPWVHNDETLIRWQQGMTGYPLVDAGMRELWQTGYMHNRVRMITGSFL 347

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK+LL+ W  G+++F   LLD DLA+N+ GWQW A  G D+ PYFR+FNP  QG++FDP 
Sbjct: 348 VKNLLLHWHYGQQWFHDCLLDADLANNSAGWQWIAGCGVDAAPYFRVFNPVRQGEKFDPD 407

Query: 422 GTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKACHHTLNQYY 475
           GT+   ++PEL  +P +Y+  P       L +  ++L   YP PIVD   + +  L+ Y 
Sbjct: 408 GTYTLRFVPELAKLPKKYLFNPWEAPKNILQEAGITLGKTYPEPIVDLAISRNRALSAYA 467

Query: 476 AAKKQSL 482
           + +K+ +
Sbjct: 468 SIRKKKI 474


>gi|302877366|ref|YP_003845930.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
           ES-2]
 gi|302580155|gb|ADL54166.1| Deoxyribodipyrimidine photo-lyase [Gallionella capsiferriformans
           ES-2]
          Length = 473

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 173/479 (36%), Positives = 239/479 (49%), Gaps = 25/479 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQV 68
            + W R DLR+ D+ ALY A  NS A V  VF+              R+  FI+ SL ++
Sbjct: 7   SICWFRRDLRLDDHAALYHALKNSRA-VHCVFVFDTVILDALSDKHDRRVEFIWHSLYEL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L Q G   Q        + +E +     +  V  +F NR YE   VRRD  +   L 
Sbjct: 66  NALLQQHGSTLQILHG----NPVELIPHLARELEVQAVFCNRDYEPLAVRRDAAVAASLS 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP----AIRL 184
             +    + D V+     IL      Y V+TP++ A ++ L    LR+ PV     ++  
Sbjct: 122 D-IDFHQYKDQVIFEQSEILTGGGTPYSVFTPYKNAWLKKLDDFYLRAYPVERYFSSLAK 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           + P     +      P +      P G   A  +   F   ++  Y E R+ PA++G S 
Sbjct: 181 SAPQAFPALALLGFLPGKLNVQALPTGASGAATLFENFVS-RIDAYGEARNFPAVKGVSY 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS +L  G +S R+  +              +G   WL+ELIWR+FY+  +  +P +  G
Sbjct: 240 LSVHLRFGTISIRRVASF-------AYYSGGAGGQVWLSELIWRDFYQMQLHHHPQLGQG 292

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F      I +  +     AW +  TG+P+IDAAMRQLN  G+MHNRLRM+ ASFLVKD
Sbjct: 293 AAFKAQFNDIRFPNEEGKFAAWCEARTGYPLIDAAMRQLNGSGYMHNRLRMVVASFLVKD 352

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YF   L+D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q ++FD  G F
Sbjct: 353 LHIDWRWGERYFAQHLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFDGAGRF 412

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR ++PEL   P ++IHAP              +   YPLP+VDH  A   TL  + AA
Sbjct: 413 IRRYVPELAGCPDKWIHAPWLMPAAEQQRCGVLVGKTYPLPVVDHAVARITTLALFKAA 471


>gi|261876465|dbj|BAI47558.1| cryptochrome2 [Glycine max]
          Length = 634

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 139/482 (28%), Positives = 227/482 (47%), Gaps = 23/482 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA       V+ V+I  P++  Q         ++  SL  + 
Sbjct: 6   TIVWFRRDLRIEDNPALAAAAKEG--SVLPVYIWCPKEEGQFYPGRVSRWWLKQSLAHLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           +SL   G      +  +   ++  L       + TK+ +N  Y+   + RD  ++++L +
Sbjct: 64  QSLKSLGSRLVLIKTHS---TVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +S++  +L  P  + + + + +  +  F K  +   +       P   I   G V
Sbjct: 121 QGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKV 180

Query: 189 TPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               +         + P  A+    +  G +NA   L +F ++ +  Y ++R       T
Sbjct: 181 EECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDST 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFY 298
           S LSPYL  G LS R+ +   + + +    +  S        +L  +  RE+ R+L   +
Sbjct: 241 SLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRAIGLREYSRYLCFNF 300

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     K  +   +   WN D+ + + W+QG TGFP++DA MR+L   GW+HNR+R+I +
Sbjct: 301 P-FTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVS 359

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ +    D     R+ NP IQG +F
Sbjct: 360 SFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHEPERLDNPEIQGVKF 419

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLN 472
           DP+G ++R WLPEL  +PT++IH P             +L  NYP PI+D   A    + 
Sbjct: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLIE 479

Query: 473 QY 474
             
Sbjct: 480 AI 481


>gi|115525443|ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
           BisA53]
 gi|115519390|gb|ABJ07374.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
           palustris BisA53]
          Length = 483

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 154/492 (31%), Positives = 234/492 (47%), Gaps = 26/492 (5%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A +     LVW R+DLR++D+ AL AA  +S   V+ +++   +      +      ++ 
Sbjct: 2   AISPPRPSLVWFRDDLRLSDHPALNAAA-SSGRPVLCLYVLDEQSPGGRPLGGAARWWLA 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +Q+ LS++G      + +    + + +     +     ++YN             
Sbjct: 61  QSLRSLQQILSERGATLMLRRGA----AAQVVAGLARETNAEVVYYNDIAMAPARTVAAE 116

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L   L  H +        +L  P +I     +  +V+TPF K ++         + P+PA
Sbjct: 117 LAATLADHGIAVHQHPGDLLAAPETIRTKEGRGLRVFTPFWKRVLSLGDP----AKPLPA 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
               GP   +   R  D+  +   P         +  GE  A   L  F    +  Y   
Sbjct: 173 PTALGPPPAAASDRLDDWALEPTAPDWAGGLRAAWQPGEAAAQRALTDFLTTGIAGYAGD 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P   GTS LSP+L  G + PRQ W+  +                +L+EL WREF RH
Sbjct: 233 RDRPDRPGTSLLSPHLRFGEIGPRQIWHAARFAAA-ARPAIAGDVDKFLSELGWREFCRH 291

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L+  +  +   +   P  +   W +D   L+AW++G TG+PI+DA MRQL   G MHNR+
Sbjct: 292 LLFDHSDLAT-RNLQPAFDAFPWVEDPAGLRAWQRGLTGYPIVDAGMRQLWQTGVMHNRV 350

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+ ASFLVK LL+DWR GE++F   L+D D  SN G WQW A  G D+ PYFR+FNP +
Sbjct: 351 RMVVASFLVKHLLIDWRCGEQWFWDTLVDADAGSNPGNWQWVAGCGADAAPYFRVFNPIL 410

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
           QG++FDP G ++R ++PEL  +P   IH P +            L  NYP PI++H++  
Sbjct: 411 QGEKFDPDGAYVRRFVPELARLPAALIHQPWTATPLELASAGVQLGHNYPEPIIEHRRGR 470

Query: 468 HHTLNQYYAAKK 479
              L  Y   +K
Sbjct: 471 ERALAAYATVRK 482


>gi|86607703|ref|YP_476465.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556245|gb|ABD01202.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 487

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 177/481 (36%), Positives = 258/481 (53%), Gaps = 17/481 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  L+W R DLR+ DN AL+ A   S ++V+ VFI  P+  R+  ++  +  F+  +L +
Sbjct: 3   SPVLLWHRRDLRLGDNTALHEAAQRS-SQVVPVFIFDPQMLRRSDMAPARVAFLLQALQE 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q+  +Q GI   +       +    L    +      +F+N   E   ++++  ++  L
Sbjct: 62  LQERYAQMGIPLIWRLGDPSVE----LRCLAIDLGARAVFWNADGEPFALQQESRVQASL 117

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I   S+ D +L  PG +L  A + Y V+TPF +    +L + D   +P     ++G
Sbjct: 118 AAAGIQSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRW-ASLPKPDPYPIPKGLQPVSG 176

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQL 245
            +    +P   D  F     +   GE  A  +L  FC+  ++  Y   R+ PA  GTS L
Sbjct: 177 -LKAQPLPTLADLGFVCDQRIPAAGEAAAQALLEDFCQGLRILDYERARNFPAEPGTSLL 235

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           SP+L  G +  RQ W   +E   ++  +  +S   +W  EL WREFY+H++A +P V  G
Sbjct: 236 SPHLCWGTIGIRQVWQATREVEAEVRSQEAESSLQTWRQELCWREFYKHVLAHWPHVETG 295

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             +    + +EW+      QAW  G TG+PI+DAAMRQLN  GWMHNR RMI ASFL KD
Sbjct: 296 -AYRRAFDALEWDNRQDWFQAWCTGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKD 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YFM +L+DGDLA+NNGGWQW+AS G D  P  RIFNP  Q  R+DP+G +
Sbjct: 355 LLIDWRWGERYFMQKLVDGDLAANNGGWQWSASVGTDPKP-LRIFNPATQAARYDPEGEY 413

Query: 425 IRHWLPELNNVPTQYI----HAPH-SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           IR +LPEL  + T  +      P  +W  +   S  YP PIVDHK        +Y A ++
Sbjct: 414 IRRYLPELARLDTPALLWVGDDPKGAWALRERRSCGYPDPIVDHKVQQQAFKRRYQAVQQ 473

Query: 480 Q 480
            
Sbjct: 474 A 474


>gi|195995781|ref|XP_002107759.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
 gi|190588535|gb|EDV28557.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
          Length = 503

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/493 (32%), Positives = 237/493 (48%), Gaps = 21/493 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           +++ +   LVWLR DLR+ DN AL+ A       +I V+I   +   +         ++Y
Sbjct: 2   SSSKIPCTLVWLRQDLRLIDNPALFHAAKRGQ--LITVYIFDEDCSGKRRTGQACLWWLY 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  ++  LSQ  I           D+   L           +++NR YE  E  RD  
Sbjct: 60  HSLKSLRNQLSQWNIPLIVKSG---KDAFTILKELLDSYNADAIYWNRCYEPFEYNRDCS 116

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +E++L+   V  +++ D VL  P +I        ++Y  F    +           P   
Sbjct: 117 IEEKLKMENVTVETYQDRVLFEPWTIKTAKGGPVQIYVHFWNQCLSLPQPRKPYDKPKFK 176

Query: 182 IR---LTGPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            +    +    P+   R           +   +  GE+ A+  L+ F K  +  Y E+  
Sbjct: 177 NQTGCQSKCDEPAVWQRLAKLSQDMPMKLQDFWHPGEEQAISKLKSFIKNSLNAYAEKSQ 236

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRH 293
              +  TS LSPYL  G +SP   W+ ++                  +L  L WRE+  H
Sbjct: 237 CLRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVKSESLKQYLRSLGWREYTCH 296

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L+  YP +   K F    E+++   D   LQ+W+QG TG+P++DA MRQL+  G M NRL
Sbjct: 297 LLFHYPDLP-QKCFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNRL 355

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL+K LLV W+ GEE+F S+L+D DLA N   WQWAA +G ++ PYFR+FNP  
Sbjct: 356 RMIVASFLIKHLLVPWQKGEEWFWSKLIDADLAQNAFNWQWAAGSGPNACPYFRVFNPIT 415

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDL--SLNYPLPIVDHKKAC 467
           QG++FD  G ++R W+PEL  +P  YIH P     + L K ++     YP PIV HK A 
Sbjct: 416 QGEKFDADGYYVRKWIPELAALPNAYIHKPWEAPSTVLKKANIVLGKTYPRPIVQHKAAR 475

Query: 468 HHTLNQYYAAKKQ 480
              L  +   K++
Sbjct: 476 ELALATFGQTKRK 488


>gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
 gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
          Length = 479

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 168/482 (34%), Positives = 238/482 (49%), Gaps = 18/482 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN  L AA   S +KV+ VF   P    +  ++  +  ++  SL ++Q+
Sbjct: 6   LFWHRRDLRIADNIGLAAARQQS-SKVVGVFCLDPNILERDDVAPARVTYMIGSLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G            D ++ +           +F+N   E     RD+ +   L+ +
Sbjct: 65  RYVQAGSQLLILHG----DPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAILDILKDK 120

Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PAI 182
            I       D +L  P  I + +   Y VYTPF K          + +L           
Sbjct: 121 GIQFLTHKWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLQNAEGLTESEQ 180

Query: 183 RLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            L        +P   D  F    D +   GE  A   L +F  + +  Y EQR+ PA+ G
Sbjct: 181 ELAQKAGVKTLPTAKDLGFFWDADLIIAPGEAAAQAKLEEFTAKAITEYQEQRNFPAVDG 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFYPS 300
           TSQLS  L  GV+  R  W    E   +   +  S A  +W  EL WREFY+H M  +P 
Sbjct: 241 TSQLSAALKFGVIGIRTVWQATLEALENSRSEEASAAIRTWQQELAWREFYQHAMYNFPE 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G  +    +   W  +    QAW++G TG+PI+DAAMRQ+N  GWMHNR RMI ASF
Sbjct: 301 LADG-AYRETFKNFPWETNEEHFQAWREGKTGYPIVDAAMRQMNESGWMHNRCRMIVASF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDLL++ ++GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q ++FDP
Sbjct: 360 LTKDLLINPQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQKFDP 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
              +IR W+PEL ++ T+Y+            ++ Y  PIVDH+K       +Y   K  
Sbjct: 419 DAEYIRRWVPELRSMDTEYLVT-GKITPLERHAVGYVKPIVDHQKQQQLFKQRYQQQKAT 477

Query: 481 SL 482
           SL
Sbjct: 478 SL 479


>gi|15219720|ref|NP_171935.1| CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein
           homodimerization [Arabidopsis thaliana]
 gi|30678870|ref|NP_849588.1| CRY2 (CRYPTOCHROME 2); blue light photoreceptor/ protein
           homodimerization [Arabidopsis thaliana]
 gi|3913379|sp|Q96524|CRY2_ARATH RecName: Full=Cryptochrome-2; AltName: Full=Blue light
           photoreceptor
 gi|1857038|gb|AAD09837.1| cryptochrome 2 apoprotein [Arabidopsis thaliana]
 gi|30793901|gb|AAP40403.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana]
 gi|30794033|gb|AAP40463.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana]
 gi|166007535|gb|ABY77601.1| At1g04400 [Arabidopsis thaliana]
 gi|166007545|gb|ABY77606.1| At1g04400 [Arabidopsis thaliana]
 gi|166007549|gb|ABY77608.1| At1g04400 [Arabidopsis thaliana]
 gi|166007553|gb|ABY77610.1| At1g04400 [Arabidopsis thaliana]
 gi|166007559|gb|ABY77613.1| At1g04400 [Arabidopsis thaliana]
 gi|166007561|gb|ABY77614.1| At1g04400 [Arabidopsis thaliana]
 gi|166007563|gb|ABY77615.1| At1g04400 [Arabidopsis thaliana]
 gi|166007565|gb|ABY77616.1| At1g04400 [Arabidopsis thaliana]
 gi|166007569|gb|ABY77618.1| At1g04400 [Arabidopsis thaliana]
 gi|166007573|gb|ABY77620.1| At1g04400 [Arabidopsis thaliana]
 gi|166007575|gb|ABY77621.1| At1g04400 [Arabidopsis thaliana]
 gi|166007577|gb|ABY77622.1| At1g04400 [Arabidopsis thaliana]
 gi|166007579|gb|ABY77623.1| At1g04400 [Arabidopsis thaliana]
 gi|166007585|gb|ABY77626.1| At1g04400 [Arabidopsis thaliana]
 gi|166007589|gb|ABY77628.1| At1g04400 [Arabidopsis thaliana]
 gi|166007591|gb|ABY77629.1| At1g04400 [Arabidopsis thaliana]
 gi|166007597|gb|ABY77632.1| At1g04400 [Arabidopsis thaliana]
 gi|332189571|gb|AEE27692.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|332189572|gb|AEE27693.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 612

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + 
Sbjct: 7   TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  N   +I  +         TK+ +N  Y+   + RD  ++++L  
Sbjct: 65  QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +   P   + +T   
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    +   +          +   +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE+ R++ 
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP +QG
Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
            ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD   A   
Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480

Query: 470 TLNQYYAAKKQSLL 483
                   ++  ++
Sbjct: 481 LAKAISRTREAQIM 494


>gi|152995181|ref|YP_001340016.1| deoxyribodipyrimidine photo-lyase [Marinomonas sp. MWYL1]
 gi|150836105|gb|ABR70081.1| Deoxyribodipyrimidine photo-lyase [Marinomonas sp. MWYL1]
          Length = 470

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 183/473 (38%), Positives = 260/473 (54%), Gaps = 11/473 (2%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            HLVWLRNDLR  DN ALY A   ++     +  +   TP+QW QH  S  ++      +
Sbjct: 4   THLVWLRNDLRCVDNPALYLASLEANFAREGIAVIVTPTPKQWEQHNESDAKNGLRAGLI 63

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + K+L+  GI     +   FD   + +  +CL   +  L++NR   I+E +RD+ + +
Sbjct: 64  KNLAKTLATLGIPLHTLEADTFDQLPDAITVFCLSNNIKHLWFNRDLPIHEQQRDQAVCE 123

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +LQ   I      + ++    +L+     +KV+TPF    +  L Q D+  LP P  +  
Sbjct: 124 QLQQHQISTHVQATDIIVSQDVLSQQGTPFKVFTPFFNRWVTMLAQQDITPLPTPDPQAE 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               P  +   ++ PF+  D ++P     A   L +FC  K  +Y E RD P    TS L
Sbjct: 184 ALPEPC-LNLTWEKPFR--DDLWPADHDTAKQKLWQFCHHKERHYQEGRDYPIEPATSTL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL++G L PRQC   +         + +     WL EL WR+FYR LM+ +P +C  +
Sbjct: 241 SPYLALGALGPRQCLEAIFYTCNQEERRWQDSI--WLKELAWRDFYRQLMSHFPFLCKSR 298

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF P T  + W ++    QAW +G TGFPI+DAAMRQLN  GWMHNRLRM+ ASF  K +
Sbjct: 299 PFKPETSALIWRQNEEEFQAWCEGRTGFPIVDAAMRQLNQTGWMHNRLRMVAASFFTKLM 358

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
             DWR GE YFMS+L+DG+ A+NNGGWQW+ASTG D+ PYFR+FNPT Q + +D  G FI
Sbjct: 359 FADWRRGEAYFMSKLIDGEFAANNGGWQWSASTGCDAAPYFRVFNPTRQSQTYDKNGDFI 418

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++PEL  +  + IH P     K     +YP PI+D+K A    +  +   K
Sbjct: 419 RRFVPELTKLDAKSIHDPKPEQRKQ---CHYPEPIIDYKPARLAAIAAFDELK 468


>gi|2341035|gb|AAB70435.1| Match to Arabidopsis photolysase (PHH1) gene (gb|X99061) and
           cryptochrome 2 apoprotein (CRY2) (gb|U43397). ESTs
           gb|W43661 and gb|Z25638 come from this gene [Arabidopsis
           thaliana]
 gi|50659694|gb|AAT80593.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659696|gb|AAT80594.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659698|gb|AAT80595.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659700|gb|AAT80596.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659702|gb|AAT80597.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659722|gb|AAT80607.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659724|gb|AAT80608.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659726|gb|AAT80609.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659728|gb|AAT80610.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659730|gb|AAT80611.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659732|gb|AAT80612.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659734|gb|AAT80613.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659736|gb|AAT80614.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659738|gb|AAT80615.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659740|gb|AAT80616.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659742|gb|AAT80617.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 610

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + 
Sbjct: 5   TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  N   +I  +         TK+ +N  Y+   + RD  ++++L  
Sbjct: 63  QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +   P   + +T   
Sbjct: 120 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    +   +          +   +  G  NA  +L +F ++++  Y +       
Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE+ R++ 
Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 299

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 300 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP +QG
Sbjct: 359 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
            ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD   A   
Sbjct: 419 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 478

Query: 470 TLNQYYAAKKQSLL 483
                   ++  ++
Sbjct: 479 LAKAISRTREAQIM 492


>gi|166007547|gb|ABY77607.1| At1g04400 [Arabidopsis thaliana]
 gi|166007551|gb|ABY77609.1| At1g04400 [Arabidopsis thaliana]
 gi|166007555|gb|ABY77611.1| At1g04400 [Arabidopsis thaliana]
 gi|166007557|gb|ABY77612.1| At1g04400 [Arabidopsis thaliana]
 gi|166007567|gb|ABY77617.1| At1g04400 [Arabidopsis thaliana]
          Length = 612

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + 
Sbjct: 7   TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  N   ++  +         TK+ +N  Y+   + RD  ++++L  
Sbjct: 65  QSLKALGSDLTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +   P   + +T   
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    +   +          +   +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE+ R++ 
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP +QG
Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
            ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD   A   
Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480

Query: 470 TLNQYYAAKKQSLL 483
                   ++  ++
Sbjct: 481 LGKAISRTREAQIM 494


>gi|304650441|gb|ADM47404.1| cryptochrome 2 [Brassica juncea]
          Length = 619

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 142/500 (28%), Positives = 229/500 (45%), Gaps = 30/500 (6%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS +   +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  
Sbjct: 1   MSTNKKTIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +  N   ++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLTQSLKALGSELTLIKTHN---TVSAILDCVRATGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I  +S++  +L  P  I     + +  +  + K  +   V++ +   P   I
Sbjct: 116 KEKLVERGIAVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMSVESVVLPPPWRLI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            LT   T        +   +          +   +  G  NA  IL +F ++++  Y + 
Sbjct: 176 PLTAAET-VWACSLEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKN 234

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R+ +   + +      D   + +  A  +L  +  R+
Sbjct: 235 SKKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGEESAVLFLRGIGLRD 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 295 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWM 353

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 354 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLD 413

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           NP IQG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 414 NPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 473

Query: 464 KKACHHTLNQYYAAKKQSLL 483
             A           ++  ++
Sbjct: 474 DTARELLTKAISRTREAQIM 493


>gi|1514443|emb|CAA67508.1| blue light receptor [Arabidopsis thaliana]
          Length = 612

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + 
Sbjct: 7   TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  N   +I  +         TK+ +N  Y+   + RD  ++++L  
Sbjct: 65  QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +   P   + +T   
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    +   +          +   +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE+ R++ 
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP +QG
Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
            ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD   A   
Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480

Query: 470 TLNQYYAAKKQSLL 483
                   ++  ++
Sbjct: 481 LAKAISRTREAQIM 494


>gi|224498666|ref|ZP_03667015.1| hypothetical protein LmonF1_02791 [Listeria monocytogenes Finland
           1988]
          Length = 467

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 167/484 (34%), Positives = 245/484 (50%), Gaps = 35/484 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++ + +     +             E L S+       K+++NR        RD+  +  
Sbjct: 57  KQEVDKTALLQIMFGEPVGCLKQLKETLPSW------DKVYFNRDETGYGAERDEAAKTF 110

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
              + +  ++F DS L     +     + YK++TP+ K   + + +      P       
Sbjct: 111 FDEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKET-----PFKVTLKA 165

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             +   N+   ++  F  +   FPI   GE+ A   L  F K  +  Y + RD P +  T
Sbjct: 166 DNIRKENLFPKYEEQFAEMTCDFPILDSGEKTANTRLANFIKHDIADYDKARDFPELDKT 225

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   +P+  
Sbjct: 226 SHLSRYLRTGEISIRTIWQALQE------TEATEGRATFEKELCWRDFYNMIYVSFPNQ- 278

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +P       IEW  +    +AW+ G TGFP++DAAMRQL   GWMHNRLRM+TASFL 
Sbjct: 279 KNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLT 338

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G
Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTG 398

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476
            FIR ++ EL N+P +YIH P    +         L  +YP P++DHK+     + +Y  
Sbjct: 399 KFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEF 458

Query: 477 AKKQ 480
           +K+ 
Sbjct: 459 SKEH 462


>gi|3551219|dbj|BAA32808.1| blue-light photoreceptor [Adiantum capillus-veneris]
 gi|3551225|dbj|BAA32811.1| blue-light photoreceptor [Adiantum capillus-veneris]
          Length = 679

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 147/497 (29%), Positives = 235/497 (47%), Gaps = 27/497 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A T ++  +VW R DLRI DN AL AA       V+ VFI +PE+  Q         +
Sbjct: 1   MAAHTIVAHTIVWFRRDLRIEDNPALVAAVRAG--PVLPVFIWSPEEEGQFLPGRVSRWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+ + +SL+  G      + SN    +  L         T++FYN  Y+   + RD
Sbjct: 59  LKQSLVHLNESLTILGAPLVMRRASNV---LAALLEIKKATGATQVFYNHLYDPVSLVRD 115

Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +++ L Q  +I  SF+  +L  P  + +   Q +  ++ F    +    + + + LP 
Sbjct: 116 HRVKQGLSQAGIIVNSFNADLLYEPWEVNDDNGQAFTTFSGFWAKCMDMPAEPEAQILPP 175

Query: 180 PAI-RLTGPVTPSNIPRFFDYPFQA------IDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             I +  GP    +I                +   +  G  NA   L  F    +  Y  
Sbjct: 176 KRILKFPGPSLSCSIEDLDLEDELEKGSNALLARAWQPGWANADRALESFINGSLMEYAA 235

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWR 288
            R       TS LSP+L  G +S R+ ++ ++ + V    +  ++ +     +L  + +R
Sbjct: 236 NRQKVDSATTSLLSPHLHYGEVSVRKIFHNVRMKQVLWVKEGRVEAEESVNLFLRSIGFR 295

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+ R+L   +P     +  +   +   W  D    +AW+QG TG+P++DA MR+L   GW
Sbjct: 296 EYSRYLSFNFP-FTHERSLLYNLKFFPWRVDESYFKAWRQGRTGYPLVDAGMRELWATGW 354

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           +HN++R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI
Sbjct: 355 LHNQIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRI 414

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVD 462
            NP I+G +FDP G ++R WLPEL+ +PT++IH P             +L  NYP PIV+
Sbjct: 415 DNPQIEGYKFDPYGEYVRRWLPELSRLPTEWIHHPWDAPPSVLRAAGIELGSNYPRPIVE 474

Query: 463 HKKACHH---TLNQYYA 476
              A       L + +A
Sbjct: 475 IAAARERLEQALAEMWA 491


>gi|50659746|gb|AAT80619.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659748|gb|AAT80620.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659750|gb|AAT80621.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659752|gb|AAT80622.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659754|gb|AAT80623.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 610

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 135/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + 
Sbjct: 5   TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  N   ++  +         TK+ +N  Y+   + RD  ++++L  
Sbjct: 63  QSLKALGSDLTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +   P   + +T   
Sbjct: 120 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    +   +          +   +  G  NA  +L +F ++++  Y +       
Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE+ R++ 
Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 299

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 300 FNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP +QG
Sbjct: 359 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
            ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD   A   
Sbjct: 419 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 478

Query: 470 TLNQYYAAKKQSLL 483
                   ++  ++
Sbjct: 479 LGKAISRTREAQIM 492


>gi|296136973|ref|YP_003644215.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
 gi|295797095|gb|ADG31885.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
          Length = 497

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 167/497 (33%), Positives = 243/497 (48%), Gaps = 29/497 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIA-VF---IATPEQWRQHGISARQ 57
            A   + + LVWLR DLR+ DN AL+AA    D   +A VF   I  P   ++   + R+
Sbjct: 12  SAVEKLPLGLVWLRRDLRLHDNAALHAALRACDKVALAFVFDRDILDP-LLQRGLQADRR 70

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI A++ ++  +L ++G        S      E +     +     +F  R  E   +
Sbjct: 71  VEFILAAVAEIDAALRERGAALIVRHASAR----EAIPVLAAELGAQAVFCGRDDEPAAL 126

Query: 118 RRDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD  +E+ L+       S  + ++     +L    + Y V+TP+R A +        + 
Sbjct: 127 ARDAAVERALRQDGRALHSVKEHMIFERDEVLTAQDKPYSVFTPYRTAWLARYAAQPQQP 186

Query: 177 L----PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYY 229
           +        +          +P   +  F   +      P+G   A  ++  F   ++  
Sbjct: 187 VDSAVTSARLAALPAALQQPLPTLSELGFAPSNLHALKLPLGASGASALVDDF-SRRIDD 245

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RD PA +G S LS +L  G +S R+                  GA  WL+EL+WR+
Sbjct: 246 YDQARDYPARKGPSYLSVHLRFGTVSVRELVAMAWARQQA----GSEGARVWLSELVWRD 301

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FY  ++  +P V +   F P  ++I+W  D     AW +G TG+P++DAAMRQ+N  G+M
Sbjct: 302 FYFQILFHHPHV-VNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQTGYM 360

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRM+ ASFL KDL +DWR GE YF   L D DLA+NNGGWQWAAS+G D+ PYFRIF
Sbjct: 361 HNRLRMVVASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYFRIF 420

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463
           NP  Q ++FD  G FIR ++PEL  + ++ IHAP              L   YP PIV H
Sbjct: 421 NPVAQSEKFDAGGDFIRRYVPELAQLASKDIHAPWKAPAALLQAAGVRLGSTYPAPIVRH 480

Query: 464 KKACHHTLNQYYAAKKQ 480
             A   TL +Y   K Q
Sbjct: 481 DLARAETLERYAVVKAQ 497


>gi|297848668|ref|XP_002892215.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338057|gb|EFH68474.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 612

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 137/492 (27%), Positives = 228/492 (46%), Gaps = 29/492 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + 
Sbjct: 7   TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G    + +  N   ++  +         TK+ +N  Y+   + RD  ++++L  
Sbjct: 65  QSLKALGSDLTFIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I  +S++  +L  P  I     + +  ++ + K  +   +++ +   P   + +T   
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMPIESVMLPPPWRLMPITAAA 181

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    +   +          +   +  G  NA  IL +F ++++  Y +       
Sbjct: 182 EAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE+ R++ 
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP +QG
Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH- 468
            ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD + A   
Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIETAREL 480

Query: 469 --HTLNQYYAAK 478
               +++   A+
Sbjct: 481 LARAISRTREAQ 492


>gi|159898493|ref|YP_001544740.1| deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891532|gb|ABX04612.1| Deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 486

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 174/489 (35%), Positives = 248/489 (50%), Gaps = 21/489 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W R DLR+TD++ALYAA   S   VI VFI          + A       A L  +
Sbjct: 2   PVICWFRRDLRLTDHRALYAAAEASAGAVIPVFILDDTILHDGYVGAALIAVTLAMLEAL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L Q+G              +  L     + + + +++NR Y    ++RD  ++  L+
Sbjct: 62  DHDLQQRGSRLIVRHG----QPLAELQRLVSETQASGVYWNRDYLPYAIKRDSAVKHWLR 117

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + +   SF DSVL+ P  +     Q  Y VY  + K   +       + +P P+  +  
Sbjct: 118 EQGLQAHSFHDSVLVEPEGLKTKTEQKPYVVYGSYVKRWSELAYHQAEQLVPAPSKFVAP 177

Query: 187 P--VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQ 240
           P  +    IP   D  F+    +  +GE  A   L +F   +       Y + R++PA  
Sbjct: 178 PSDLASLPIPSLADLGFELQQTIPQVGETIAQQRLAQFFDRRQKLSVLKYTKAREVPAEA 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVD-LLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           GTSQLS  L +G +S RQC  +  +   + L  + + G  +WL EL WR++Y  L+   P
Sbjct: 238 GTSQLSVDLRMGTISIRQCLKQAVDLLTEPLNAEQRQGVDTWLKELAWRDYYTQLIYHNP 297

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +  G    P  ++I W  D     AW+QG TG+PI+DA  RQLN + WMHNR+RMI+AS
Sbjct: 298 YMLNG-SLDPRYDQIIWRNDPSEFLAWQQGQTGYPIVDAGQRQLNQMAWMHNRVRMISAS 356

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQGKRF 418
           FL+KDLL+DWR GE YFM QL DGD  +NNGGWQWAA  +G  + PYFRIFNP  Q K+ 
Sbjct: 357 FLIKDLLIDWRWGERYFMQQLCDGDPTANNGGWQWAAGSSGPSAQPYFRIFNPIAQSKKH 416

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           DP G +IR ++PEL NVP  YIH P +            +  +YP P+V+H  A    L 
Sbjct: 417 DPDGQYIRRFVPELANVPDHYIHEPWTMPPAVQAHVGCVIGRDYPAPLVEHSFARERALA 476

Query: 473 QYYAAKKQS 481
            Y  A + +
Sbjct: 477 AYRTALQTN 485


>gi|300710895|ref|YP_003736709.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3]
 gi|299124578|gb|ADJ14917.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3]
          Length = 459

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 155/473 (32%), Positives = 236/473 (49%), Gaps = 20/473 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R DLR+TDN+ L      +    + VF+           +  +  F+  +L  +
Sbjct: 1   MDLCWHRRDLRVTDNRML------AGRNALPVFVLDEAVLE--HAAPPRVAFMLDALESL 52

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++  ++G      +     D    + +   +  V  + +N  Y      RD+ +   L 
Sbjct: 53  REAYRERGGNLLIERG----DPSAVVPTLAAEFGVDTVVWNHDYSGLARERDEAVRAALD 108

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R I  + + D+V+  PGSI       Y V+T F K  +       + +       ++ P
Sbjct: 109 ERGINHEQYHDAVIHEPGSITTTDGDPYSVFTYFGKKWLDRDKPDPVSAPES----VSDP 164

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             P  IP   D  F+A +   P  G   A + L  FC   +  Y E RD P+  GTS+LS
Sbjct: 165 DDPGGIPALSDLGFEAPEGSVPDAGPDAAENRLETFCDGPIRRYEEDRDYPSRGGTSRLS 224

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-FSWLNELIWREFYRHLMAFYPSVCMGK 305
             L  G +  R+ +   +    +   K + G+   + ++L WREFY  ++ ++P+V   K
Sbjct: 225 VDLKFGTVGIRRVYAATENAKAEAGSKEERGSVEEFQSQLAWREFYTQVLYYHPNVVT-K 283

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +  +  +IEW  D     AW +G TG+PI+DA MRQL    WMHNR+RM+ A+FL KDL
Sbjct: 284 NYKTYDGEIEWRTDEEGFDAWTEGKTGYPIVDAGMRQLREESWMHNRVRMLVAAFLTKDL 343

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR G ++F   L+D D  ++ GGWQWAASTG D+ PYFRIFNP  QG+R+DP   +I
Sbjct: 344 LVDWREGYDWFRKHLVDHDTGNDTGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYI 403

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++PEL  V  + IHA H   D+    + YP PIVDH       +  +  A+
Sbjct: 404 REYVPELREVDPKTIHAWHDLDDEARPDVGYPAPIVDHAIRREVAIETFERAR 456


>gi|18026276|gb|AAL16377.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|18026278|gb|AAL16378.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|166007539|gb|ABY77603.1| At1g04400 [Arabidopsis thaliana]
          Length = 612

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 135/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + 
Sbjct: 7   TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  N   +I  +         TK+ +N  Y+   + RD  ++++L  
Sbjct: 65  QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +   P   + +T   
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    +   +          +   +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE+ R++ 
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF +K LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP +QG
Sbjct: 361 IVSSFAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
            ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD   A   
Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDIAREL 480

Query: 470 TLNQYYAAKKQSLL 483
                   ++  ++
Sbjct: 481 LAKAISRTREAQIM 494


>gi|93005295|ref|YP_579732.1| deoxyribodipyrimidine photolyase [Psychrobacter cryohalolentis K5]
 gi|92392973|gb|ABE74248.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter
           cryohalolentis K5]
          Length = 541

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 196/516 (37%), Positives = 273/516 (52%), Gaps = 50/516 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W R DLR+ DN AL A C  ++   A++ AVF  TPEQW+ H +S  Q   I  +L  
Sbjct: 25  LMWFRRDLRVHDNTALAAICERANEDNAQLSAVFFLTPEQWQAHDMSLTQLDHIARTLPI 84

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L Q  I+     C +F D I  L + C    ++ +  N +YE NEV RD+LL K+L
Sbjct: 85  LAEKLHQLNIILTVQVCPSFTDCIVTLSALCESNNISCVMANHEYEGNEVARDELLTKQL 144

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----------- 175
            +  +    + D  +LPP SI  +   MY+V+TPF K     L  +D++           
Sbjct: 145 ANNEIEFIRWHDQCILPPKSITTNDDSMYQVFTPFYKKWRHTLEVSDIQIHTALAIIDNK 204

Query: 176 ----SLPVPAIRLTGPVTPSNIPRFFDY--------PFQAIDP---------MFPIGEQN 214
               +L   +   T  +         DY         +Q ID           +P GE  
Sbjct: 205 QVNLTLSEHSANTTQDIEALCKKTVHDYQEYLQTHESYQNIDTDKQISQARLAYPAGEAE 264

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           A H L  F  + +  Y   RD+P++Q TSQLS YL+IG +SPR C+ +  +    L    
Sbjct: 265 ACHRLEHFIADDIDNYDVSRDVPSLQATSQLSTYLTIGAISPRLCYLQATQALGKLRRND 324

Query: 275 --------KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDSHLLQA 325
                    +    W++EL WR+FYRH++ + P +   + +   T+K I W+ D     A
Sbjct: 325 GDNFDSGDNNDINRWISELAWRDFYRHVLDYKPELIRHQAYKYETDKKINWSYDEDAFAA 384

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W++G TG P++DAAMR LN  G+MHNRLRM+TA FL KDLL+DWR GE YFM QL+DGD 
Sbjct: 385 WREGKTGVPLVDAAMRCLNATGFMHNRLRMVTAMFLTKDLLIDWRWGERYFMQQLIDGDF 444

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           ASNNGGWQW+ASTG DS PYFRI NP  Q K  D +G FI+ WLPEL  +PT  +H    
Sbjct: 445 ASNNGGWQWSASTGTDSAPYFRIMNPFSQAKSHDTEGIFIKTWLPELKPIPTSILHREDK 504

Query: 446 WLDKND-----LSLNYPLPIVDHKKACHHTLNQYYA 476
                        ++YP+PIV+HK A    + ++  
Sbjct: 505 MRKALSKNGTFADIDYPVPIVEHKLARQLVIAEFKK 540


>gi|241662182|ref|YP_002980542.1| deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
 gi|240864209|gb|ACS61870.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12D]
          Length = 518

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/490 (35%), Positives = 248/490 (50%), Gaps = 31/490 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V  VF+   +           + R+  FI AS+
Sbjct: 20  GLVWFRRDLRHVDHAALHYALRHC-REVYCVFVFDRDILDALLARGLKADRRVEFIRASI 78

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +++ +L + G           D     +     Q  V  +F N   E +   RD+ + K
Sbjct: 79  EELRGALREAGGDLIVVH----DHPRHAIPEIARQLNVEAVFANHDEEPSAQARDEAVRK 134

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---- 180
            L  +      F D V+     ILN   + Y V+TP++ A +  L   DLR+ P      
Sbjct: 135 ALAQQPCAWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPLDLRAYPTEPYFG 194

Query: 181 AIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           A+           P      F      +   P G      +L +F +E++  Y  +RD P
Sbjct: 195 ALARPPEALAQPTPALEAMGFARTNLSEIALPSGMSGGQTLLDEF-EERMDDYHARRDFP 253

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S R    R        +++   GA +WL+EL+WR+FY  ++  
Sbjct: 254 AVRGPSYLSTHLRFGTVSIRTLAARAHA----AMLRGSRGAATWLSELVWRDFYFMILHH 309

Query: 298 YPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P +  G  F P  ++I W   +      +AWK   TG+P++DAAM Q+   G+MHNRLR
Sbjct: 310 RPDLADGAAFHPEFDRIRWVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQSGYMHNRLR 369

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL+KDL +DWR GE+YF   L D D A+NNGGWQWAAS+G D+ P+FRIFNP  Q
Sbjct: 370 MVAASFLIKDLGIDWRRGEQYFADVLNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQ 429

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
            ++FDPQG FIR +LP+L  +P +YIHAP +            L   YPLPIVDH  A  
Sbjct: 430 SEKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEASVVLGETYPLPIVDHAAARA 489

Query: 469 HTLNQYYAAK 478
            TL++Y   K
Sbjct: 490 ATLDRYAVTK 499


>gi|16416405|dbj|BAB70665.1| blue-light receptor cryptochrome [Physcomitrella patens]
          Length = 727

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 145/505 (28%), Positives = 232/505 (45%), Gaps = 37/505 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            +  +VW R DLR+ DN AL AA       V+ VF+ +P +  Q         ++  SL 
Sbjct: 2   AACTIVWFRRDLRLEDNPALIAAARAG--TVVPVFVWSPAEDGQFHPGRVSRWWLKQSLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ SL + G      +     D +  L         T++FYN  Y+   + RD  +++ 
Sbjct: 60  HLELSLKKLGSPLILRKSP---DMLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQG 116

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I   +F+  +L  P  + +   Q + VY  F K  +    + +   LP    RLT
Sbjct: 117 LSQRGIVVHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPLLP--PRRLT 174

Query: 186 GPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQR-- 234
           GP+         +   +          +   +  G   A   L  F +  +  Y   R  
Sbjct: 175 GPIGKIVGCNAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQK 234

Query: 235 -DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWRE 289
            D  +   TS LSP+L  G LS R+ ++ +++  +    +  +G  +    +L  L +RE
Sbjct: 235 ADGASGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R+L   +P     +  +   +   W  D    +AW+QG TG+P++DA MR+L   GW 
Sbjct: 295 YSRYLSFHFP-FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWA 353

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R++ ASF VK L + WR G +YF   LLD DL  +  GWQ+ + +  D     RI 
Sbjct: 354 HNRIRVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIE 413

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463
           NP ++G RFDP G ++R W+PEL  +P +++H P             +L  NYP PIV+ 
Sbjct: 414 NPEVEGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEI 473

Query: 464 KKACHH---TLNQYY---AAKKQSL 482
             A      +L + +   AA K +L
Sbjct: 474 GAARERLQASLAEMWERDAAMKAAL 498


>gi|331222855|ref|XP_003324101.1| photolyase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309303091|gb|EFP79682.1| photolyase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 606

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 179/531 (33%), Positives = 258/531 (48%), Gaps = 59/531 (11%)

Query: 4   TTAMSVHLVWLR-NDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSH 59
             A  V + W+R  DLR++DN+AL  A     +    ++ + + +P  +R H  S R+  
Sbjct: 70  QKAEGVVVWWMRMRDLRLSDNRALAVASQLAKDQAKHLVVLHVLSPGDYRSHDRSPRRID 129

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +Q  L +  I              E +         + L  N ++E++E+RR
Sbjct: 130 FVLRNLSDLQARLHKLNIPLWTITVEPRHQIPEKIIQLVSSWGASYLTANIEHEVDELRR 189

Query: 120 DKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPF---RKALIQNLVQADLR 175
           D  +    + + I   F  D+ L+ PG +L    + Y V+ P+      LI + +   + 
Sbjct: 190 DIQVLNLAREKNIGVDFLHDTCLVEPGKVLTKENKPYSVFGPWQRNWANLINSNLDEYIA 249

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--------------FPIGEQNALHILRK 221
           +                + + F+ P  A  P               +  GEQ A  +L +
Sbjct: 250 AAEDCHPNDPSIKDVEILNQLFECPVPASLPGFELSAEDSKIMHENWKAGEQAAEELLNQ 309

Query: 222 FC----------------------------KEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
           F                             +  V  Y   R+ P + GTS+LS YL+ GV
Sbjct: 310 FLNSPLKSQSTRQTTLTKDGKTSGATTRRAETIVEQYSSLRNRPDLPGTSRLSAYLAAGV 369

Query: 254 LSPRQCWNRLKEEFVD--------LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           +SPR C                   + +   G   W +EL WR+FY+H++A +P VCM K
Sbjct: 370 ISPRACIRASFRISEKGKKPVDGLQVDRRDLGVGVWQSELGWRDFYQHVLAAWPRVCMRK 429

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           PF    E + W +D  LL+ WKQG TG+P IDA MRQL  IG+MHNR RM  A FL KDL
Sbjct: 430 PFNLKYESLVWEEDEGLLEKWKQGLTGYPFIDACMRQLKHIGYMHNRGRMCVAMFLTKDL 489

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           ++DW++GE++FM  L+DGDL SNNGGWQW+ASTG D+ PYFRIF P  Q ++ DP G FI
Sbjct: 490 MMDWKLGEKWFMENLVDGDLGSNNGGWQWSASTGTDAQPYFRIFAPLSQSEKSDPNGDFI 549

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQYY 475
           RHW+PEL ++  + IHAP   L  +    LNYP PIVDH  A    L +Y 
Sbjct: 550 RHWVPELKSITGKNIHAPFDSLPPDKFKKLNYPKPIVDHSVARKRALARYK 600


>gi|50659744|gb|AAT80618.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 610

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 135/494 (27%), Positives = 224/494 (45%), Gaps = 26/494 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + 
Sbjct: 5   TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  N   +I  +         TK+ +N  Y+   + RD  ++++L  
Sbjct: 63  QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +   P   + +T   
Sbjct: 120 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    +   +          +   +  G  NA  +L +F ++++  Y +       
Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE+ R++ 
Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 299

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 300 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF +K LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP +QG
Sbjct: 359 IVSSFAMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
            ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD   A   
Sbjct: 419 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDIAREL 478

Query: 470 TLNQYYAAKKQSLL 483
                   ++  ++
Sbjct: 479 LAKAISRTREAQIM 492


>gi|47096881|ref|ZP_00234460.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254900179|ref|ZP_05260103.1| hypothetical protein LmonJ_10210 [Listeria monocytogenes J0161]
 gi|254911267|ref|ZP_05261279.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
 gi|254935594|ref|ZP_05267291.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
 gi|47014746|gb|EAL05700.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608175|gb|EEW20783.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
 gi|293589198|gb|EFF97532.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
          Length = 467

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 167/480 (34%), Positives = 242/480 (50%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++    K  + Q      F + +E L           K+++NR        RD+  +   
Sbjct: 57  KQE-VDKTALLQIM----FGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + +  ++F DS L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E       +   G   +  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISVRTIWQALQE------NEATEGRAIFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW+ G TGFP++DAAMRQL   GWMHNRLRM+TASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P +YIH P    +         L  +YP P++DHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKYIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462


>gi|171319558|ref|ZP_02908656.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
 gi|171095203|gb|EDT40197.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
          Length = 500

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/498 (31%), Positives = 244/498 (48%), Gaps = 23/498 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A ++++  +VW R+DLR+TD  AL  A   S   ++ V++    +     +      +
Sbjct: 1   MSAKSSVAPAVVWFRDDLRVTDQPALMRAVA-SGRPLVCVYVDDTGEGAGRALGGAARWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D
Sbjct: 60  LHGSLATLDAALARHGGRLLLLRG----DARREIERVVHDTGAAAVYWNRRYAQPQRDAD 115

Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L+  L+ H +  +S + S+L  P  ++  A   ++V+T + +A+ ++   A     P 
Sbjct: 116 AALKASLKAHGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRTVAAPLPAPE 175

Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG---------EQNALHILRKFCKEKVYY 229
                  P          D    +   P +  G         E  A   L  F    +  
Sbjct: 176 RIAFHPWPAGVRERALALDTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHASLAG 235

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RD P    TS+LSP+L  G +SPRQ W+ ++           +GA  +L+EL WRE
Sbjct: 236 YADTRDRPGEPATSRLSPFLRFGNVSPRQVWHAVQGVAQAGGAACAAGAEKFLSELGWRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F   L+  +P++     F    + I W  D   L+AW++G TG+P++DA MR+L T GWM
Sbjct: 296 FSHVLLYHFPALATDN-FRAQFDAIPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM+ ASFLVK LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIF
Sbjct: 355 HNRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIF 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463
           NP  QG++FDPQG ++R W+PEL  +    IHAP              L L+YP PIVDH
Sbjct: 415 NPVAQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIVDH 474

Query: 464 KKACHHTLNQYYAAKKQS 481
             A    L+      K S
Sbjct: 475 DGARRRALDALATLPKPS 492


>gi|166007537|gb|ABY77602.1| At1g04400 [Arabidopsis thaliana]
 gi|166007541|gb|ABY77604.1| At1g04400 [Arabidopsis thaliana]
 gi|166007543|gb|ABY77605.1| At1g04400 [Arabidopsis thaliana]
 gi|166007571|gb|ABY77619.1| At1g04400 [Arabidopsis thaliana]
 gi|166007581|gb|ABY77624.1| At1g04400 [Arabidopsis thaliana]
 gi|166007583|gb|ABY77625.1| At1g04400 [Arabidopsis thaliana]
 gi|166007587|gb|ABY77627.1| At1g04400 [Arabidopsis thaliana]
 gi|166007593|gb|ABY77630.1| At1g04400 [Arabidopsis thaliana]
 gi|166007595|gb|ABY77631.1| At1g04400 [Arabidopsis thaliana]
          Length = 612

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 136/494 (27%), Positives = 223/494 (45%), Gaps = 26/494 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + 
Sbjct: 7   TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  N   +I  +         TK+ +N  Y+   + RD  ++++L  
Sbjct: 65  QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I   S++  +L  P  I     + +  +  + K  +   +++ +   P   + +T   
Sbjct: 122 RGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    +   +          +   +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE+ R++ 
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP +QG
Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
            ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD   A   
Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480

Query: 470 TLNQYYAAKKQSLL 483
                   ++  ++
Sbjct: 481 LAKAISRTREAQIM 494


>gi|114321405|ref|YP_743088.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227799|gb|ABI57598.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 479

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/482 (35%), Positives = 249/482 (51%), Gaps = 21/482 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVWLR DLR+TDN AL  A       VIAV++  PE+  Q+   A    +++ SL  + 
Sbjct: 5   TLVWLRRDLRLTDNPALDQAARRG-GPVIAVYLHAPEETPQYPPGAASHWYLHHSLKALG 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128
            +L+Q GI     +      ++  L +         +++NR YE + V RD+ +++ L+ 
Sbjct: 64  PALAQAGIPLVLRRGP----ALATLRALIRATGAGAVYWNRLYEPDAVARDRTVKQALRT 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             + C+SF  ++L  P ++ N A + Y+ +TPF +A  +    A     P    R    V
Sbjct: 120 EGLDCRSFPTALLHEPWAVRNQADRPYRAFTPFWRACRRQPPPAAPLPAPDLRDRPVPAV 179

Query: 189 TPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              ++      P    D      +  GE  AL  L  F  +++  Y + RD PA  GTS 
Sbjct: 180 EGLDLAALGLLPRTPWDTGLRNTWQAGESAALARLEAFAADRLARYAQDRDRPAEPGTSG 239

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP L  G LSPRQ W ++       +  P+    ++L+EL WREF  HL+  +P +   
Sbjct: 240 LSPALHFGELSPRQVWWQVMAAREAGV--PEDACETFLSELGWREFAHHLLWSHPDLG-D 296

Query: 305 KPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            P         W  D     L AW+ G TG P++DA M +L   GWMHNR+RM+T SFLV
Sbjct: 297 APVDDRFGAFPWRPDPGDGWLHAWQAGRTGIPLVDAGMHELWQTGWMHNRVRMVTGSFLV 356

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L + W+ GE +F   L+D D ASN  GWQW A  G D+ PYFRIFNP  QG+RFDPQG
Sbjct: 357 KHLRLPWQRGERWFRDTLVDWDAASNAMGWQWVAGCGADAAPYFRIFNPVRQGERFDPQG 416

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYA 476
            ++R WLP L N+P +YIHAP +  +         L  +YP P++D +      L+ + A
Sbjct: 417 RYVRRWLPALANLPDKYIHAPWTAPEAVLRRAGVTLGSDYPCPLIDLRLGREQALSAFQA 476

Query: 477 AK 478
            K
Sbjct: 477 IK 478


>gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
 gi|133739808|emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
          Length = 493

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 177/490 (36%), Positives = 252/490 (51%), Gaps = 29/490 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVW R DLR  D+ AL+ A   S  +V  VFI           + R+  FI+ASLL++ 
Sbjct: 7   TLVWFRRDLRSVDHAALHHALAQS-RQVYCVFIFDRAILDALPRADRRVEFIHASLLELA 65

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L   G             +   +    ++  V  +F N  YE   + RD  +   LQ 
Sbjct: 66  QALRALGGGLIVQHA----WAETAIPELAIELGVDAVFANHDYEPQAITRDAHVAAALQA 121

Query: 130 RV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRL 184
                 +F D V+     +L  A + + V+TP++ A ++ L     +A LR   + A   
Sbjct: 122 AGRSLHTFKDQVVFEKNEVLTQAEKPFSVFTPYKNAWLKKLYAESNEATLRPYEIDAYAD 181

Query: 185 TG---PVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                P +   IP   D  F+     D   P G Q A  +L  F  +++  Y + RD PA
Sbjct: 182 RFVNLPESKFPIPSLTDLGFEKTNLPDLNIPTGMQGAQDLLDAF-ADRMQRYDQTRDFPA 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++G S LS ++  G +S R    R  +          +GA  WL+EL+WR+FY  ++  +
Sbjct: 241 LKGPSYLSVHVRFGTVSIRALARRALDAMR--TGTGGNGAAVWLSELVWRDFYFMILFQH 298

Query: 299 PSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P V     F    + I W   +    L QAW  G TG+P++DAAM QLN  G+MHNRLRM
Sbjct: 299 PHVVDH-AFKADYDAITWESGDHARRLFQAWCDGQTGYPLVDAAMAQLNQTGYMHNRLRM 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TASFL+KDL +DWR GE YF  +L D DLA+NNGGWQWA+S+G D+ PYFRIFNP  Q 
Sbjct: 358 VTASFLIKDLGIDWRWGEHYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPITQS 417

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469
           ++FD QG FIR +LP+L  +  ++IHAP             ++  NYP P+V H +A   
Sbjct: 418 EKFDQQGKFIRRYLPQLAKLSDRHIHAPWCAPALELRMAGVEIGNNYPGPLVQHDEARAR 477

Query: 470 TLNQYYAAKK 479
           TL +Y   KK
Sbjct: 478 TLQRYAVVKK 487


>gi|167998114|ref|XP_001751763.1| cryptochrome 1a [Physcomitrella patens subsp. patens]
 gi|5731739|dbj|BAA83338.1| blue light photoreceptor cryptochrome [Physcomitrella patens]
 gi|162696861|gb|EDQ83198.1| cryptochrome 1a [Physcomitrella patens subsp. patens]
          Length = 727

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 145/505 (28%), Positives = 233/505 (46%), Gaps = 37/505 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            +  +VW R DLR+ DN AL AA       V+ VF+ +P +  Q         ++  SL 
Sbjct: 2   AACTIVWFRRDLRLEDNPALIAAARAG--TVVPVFVWSPAEDGQFHPGRVSRWWLKQSLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ SL + G      +     D++  L         T++FYN  Y+   + RD  +++ 
Sbjct: 60  HLELSLKKLGSPLILRKSP---DTLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQG 116

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R I   +F+  +L  P  + +   Q + VY  F K  +    + +   LP    RLT
Sbjct: 117 LSQRGIVVHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPLLP--PRRLT 174

Query: 186 GPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQR-- 234
           GP+         +   +          +   +  G   A   L  F +  +  Y   R  
Sbjct: 175 GPIGKIVGCNAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQK 234

Query: 235 -DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWRE 289
            D  +   TS LSP+L  G LS R+ ++ +++  +    +  +G  +    +L  L +RE
Sbjct: 235 ADGASGTPTSLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R+L   +P     +  +   +   W  D    +AW+QG TG+P++DA MR+L   GW 
Sbjct: 295 YSRYLSFHFP-FTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWA 353

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R++ ASF VK L + WR G +YF   LLD DL  +  GWQ+ + +  D     RI 
Sbjct: 354 HNRIRVVVASFSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIE 413

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463
           NP ++G RFDP G ++R W+PEL  +P +++H P             +L  NYP PIV+ 
Sbjct: 414 NPEVEGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEI 473

Query: 464 KKACHH---TLNQYY---AAKKQSL 482
             A      +L + +   AA K +L
Sbjct: 474 GAARERLQASLAEMWERDAAMKAAL 498


>gi|308049190|ref|YP_003912756.1| deoxyribodipyrimidine photo-lyase [Ferrimonas balearica DSM 9799]
 gi|307631380|gb|ADN75682.1| Deoxyribodipyrimidine photo-lyase [Ferrimonas balearica DSM 9799]
          Length = 456

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 184/468 (39%), Positives = 267/468 (57%), Gaps = 21/468 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R+DLR+ D+ AL+AA    +  V+A++IA+P+QW+ H    R++ + YA++  +
Sbjct: 1   MQLVWFRDDLRVHDHPALFAAAQRGE-PVVALYIASPQQWQLHDCGPRKAQWHYANVQAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++L+  GI     +C +FDD    L + C +  +  +  +    +NE   ++ L  +L 
Sbjct: 60  REALAGLGIPLTVWRCEHFDDIPARLGALCNEAGIGAVHCHHGLGVNERALEQKLADQLP 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V    + D+ L+   +I      +Y+V+TPF +   Q +        P P        
Sbjct: 120 --VPLHRYADANLVDYSAITTGQGGLYQVFTPFARRCRQWMAPPQPLPAPEPQAAQPPLQ 177

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                        + +D ++P GEQ A   L +FC++++  Y + RD PA  GTS LSPY
Sbjct: 178 ADDAW-------SETVDLLWPAGEQAAARTLARFCQQRLSAYHDDRDWPAKAGTSALSPY 230

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
            + GVLSPRQ  + L ++          GA SWLNEL+WREFYR+L+  +  +       
Sbjct: 231 FAAGVLSPRQAAHALSQQ------ADGEGAQSWLNELLWREFYRYLLYHHARLSRHDALF 284

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           P  E   W  +   L+ W+QG TGFP++DA MRQLN  GWMHNR+RM+ ASFLVKDL +D
Sbjct: 285 PAKEA-RWEANDEWLRRWQQGRTGFPLVDAGMRQLNATGWMHNRVRMLCASFLVKDLHID 343

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+GE YFM QL+DGDLASNNGGWQWAA  G D+ PYFR F+P  Q +RFDP G +IR W
Sbjct: 344 WRLGEAYFMQQLVDGDLASNNGGWQWAAGCGADAAPYFRSFSPYRQSERFDPDGDYIRQW 403

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +PEL  VP + +H    +L    L+ +YP P+VDHK        Q+  
Sbjct: 404 VPELAEVPARQLHKGGPFL----LAPDYPAPMVDHKAQTARFTAQFKQ 447


>gi|325103845|ref|YP_004273499.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
 gi|324972693|gb|ADY51677.1| Deoxyribodipyrimidine photo-lyase [Pedobacter saltans DSM 12145]
          Length = 448

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 166/477 (34%), Positives = 240/477 (50%), Gaps = 50/477 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYA 63
           T   + LVWLR DLR+ D  ALY A  N +  V+ +FI              R+  FI+ 
Sbjct: 15  TMKQISLVWLRRDLRLDDQAALYHALKN-ETNVLPLFIFDTTILNLLPNKFDRRVDFIHQ 73

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L  ++K L              + D I+       +  +  ++ NR YE   + RD+ +
Sbjct: 74  VLSDMKKELDAINSSLLVE----YGDPIDVFSELIDRFTIKAIYTNRDYEPTAIARDESV 129

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +K ++ + I  K+F D  +     I+      Y ++TP+ +     L    L+S P    
Sbjct: 130 KKLVESKGIAFKTFKDQCIFEQSEIVKDDGSPYSIFTPYSRKWKSKLNDFYLKSYPCKKY 189

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRDIPAIQ 240
                    +  +  D+ F  ++ +   G      +  KF   +E V +Y + RD PA++
Sbjct: 190 -------YHHFYQGDDFKFPDLESL---GFSKTDIVYNKFVLSREIVRHYDKTRDFPALK 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS+ S +L  G +S R+      +              ++LNELIWR+FY  ++  YP 
Sbjct: 240 GTSRASMHLRFGTISIRKLARYALDYN-----------ETYLNELIWRDFYMMILYHYPK 288

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +     F    +KI W  +    +AW +G TG+PI+DA MR+LNT G+MHNR+RMI ASF
Sbjct: 289 IVRH-SFKADYDKIPWLNNEKDFKAWCEGKTGYPIVDAGMRELNTTGFMHNRVRMIVASF 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LL+DWR GE YF  +L D DL++NNGGWQWAAS+G D+VPYFRIFNP  Q K+FDP
Sbjct: 348 LTKHLLIDWRWGEAYFAEKLDDYDLSANNGGWQWAASSGCDAVPYFRIFNPEEQTKKFDP 407

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
              +IR W+PEL+                   SL+YP PIV+HK A    LN Y  A
Sbjct: 408 NRAYIRKWIPELD-------------------SLDYPKPIVEHKFARERALNVYKKA 445


>gi|50659704|gb|AAT80598.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659706|gb|AAT80599.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659708|gb|AAT80600.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659710|gb|AAT80601.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659712|gb|AAT80602.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659714|gb|AAT80603.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659716|gb|AAT80604.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659718|gb|AAT80605.1| cryptochrome 2 [Arabidopsis thaliana]
 gi|50659720|gb|AAT80606.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 610

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 136/494 (27%), Positives = 223/494 (45%), Gaps = 26/494 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + 
Sbjct: 5   TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  N   +I  +         TK+ +N  Y+   + RD  ++++L  
Sbjct: 63  QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 119

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I   S++  +L  P  I     + +  +  + K  +   +++ +   P   + +T   
Sbjct: 120 RGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 179

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    +   +          +   +  G  NA  +L +F ++++  Y +       
Sbjct: 180 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 239

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE+ R++ 
Sbjct: 240 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 299

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 300 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP +QG
Sbjct: 359 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
            ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD   A   
Sbjct: 419 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 478

Query: 470 TLNQYYAAKKQSLL 483
                   ++  ++
Sbjct: 479 LAKAISRTREAQIM 492


>gi|16802631|ref|NP_464116.1| hypothetical protein lmo0588 [Listeria monocytogenes EGD-e]
 gi|224502111|ref|ZP_03670418.1| hypothetical protein LmonFR_06272 [Listeria monocytogenes FSL
           R2-561]
 gi|16409964|emb|CAC98667.1| lmo0588 [Listeria monocytogenes EGD-e]
          Length = 467

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 166/480 (34%), Positives = 242/480 (50%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++    K  + Q      F + +E L           K+++NR        RD+  +   
Sbjct: 57  KQE-VDKTALLQIM----FGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + +  ++F DS L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E       +   G   +  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISVRTIWQALQE------NEATEGRAIFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRM+TASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P ++IH P    +         L  +YP P++DHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462


>gi|309780777|ref|ZP_07675518.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Ralstonia sp.
           5_7_47FAA]
 gi|308920459|gb|EFP66115.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Ralstonia sp.
           5_7_47FAA]
          Length = 518

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/490 (35%), Positives = 248/490 (50%), Gaps = 31/490 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V  VF+   +           S R+  FI AS+
Sbjct: 20  GLVWFRRDLRHVDHAALHYALRHC-REVYCVFVFDRDILDALLARGLKSDRRVEFIRASI 78

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +++ +L + G           D     +     Q  V  +F N   E +   RD+ + K
Sbjct: 79  EELRGALRETGGDLIVVH----DHPRHAIPEIARQLNVEAVFANHDEEPSAQARDEAVRK 134

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L  +      F D V+     ILN   + Y V+TP++ A +  L   DLR+ P      
Sbjct: 135 ALAQQPCAWFDFKDQVIFERDEILNGQGKPYGVFTPYKNAWLAALTPFDLRAYPTEPYFG 194

Query: 185 TGPVTPSNI----PRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                P  +    P      F      +   P G      +L +F +E++  Y  +RD P
Sbjct: 195 ALAKPPEALAHPTPALEAMGFARTNLSEIALPSGMSGGQTLLDEF-EERMDDYHARRDFP 253

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S R    R        +++   GA +WL+EL+WR+FY  ++  
Sbjct: 254 AVRGPSYLSTHLRFGTVSIRTLAARAHA----SMLRGSRGAATWLSELVWRDFYFMILHH 309

Query: 298 YPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P +  G  F P  ++I W   +      +AWK   TG+P++DAAM Q+   G+MHNRLR
Sbjct: 310 RPDLADGAAFHPEFDRIRWVDGDTGDARFEAWKAARTGYPLVDAAMLQIFQSGYMHNRLR 369

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL+KDL +DWR GE+YF   L D D ++NNGGWQWAAS+G D+ P+FRIFNP  Q
Sbjct: 370 MVAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWFRIFNPVTQ 429

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
            ++FDPQG FIR +LP+L  +P +YIHAP +            L   YPLPIVDH  A  
Sbjct: 430 SEKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEASVVLGETYPLPIVDHAAARA 489

Query: 469 HTLNQYYAAK 478
            TL++Y   K
Sbjct: 490 ATLDRYAVTK 499


>gi|319762589|ref|YP_004126526.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC]
 gi|317117150|gb|ADU99638.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans BC]
          Length = 491

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 180/490 (36%), Positives = 257/490 (52%), Gaps = 31/490 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYAS 64
           A +  LVWLR DLR  D+ ALY A      +V   F+   +        S R+  FI+AS
Sbjct: 5   ATASALVWLRRDLRCDDHAALYHALRRF-GRVYCAFVFDTDILDALPTRSDRRVEFIHAS 63

Query: 65  LLQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           +L++ + L++        G             + E +        V ++  NR YE   +
Sbjct: 64  VLELHQGLAELAARSGAPGGGLIVRHGP----APECIVRLARSLGVQEVLANRDYEPQAI 119

Query: 118 RRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ + + LQ   I  S + D  LL    +L    + Y V+TP+R+A +Q L    L  
Sbjct: 120 ERDRRVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGVFTPYRRAWLQRLDAFQLTP 179

Query: 177 LPV--PAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYV 231
            PV   A  L  P     +P   +  F   +      P G + A  +L+ F   ++  Y 
Sbjct: 180 YPVASHARHLAAPPAGECLPTLQELGFARTNLHELPLPTGMRGAQQLLQDFMP-RMAAYH 238

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E RD P  +G S LS +L  G +S R    +L         +   GA +WL+EL WR+FY
Sbjct: 239 EARDYPGRKGVSYLSVHLRFGTVSIR----QLAALAAAQAAQGCEGAQAWLSELAWRDFY 294

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             ++  +P V   + F P  ++++W+    L QAW    TG+P++DAAMRQL+  G+MHN
Sbjct: 295 FMILWHHPQVAT-QSFKPVYDRVQWDDAPELWQAWCGARTGYPLVDAAMRQLHQTGYMHN 353

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRM+ ASFL KDL +DWR GE +F + L D DLA+NNGGWQWAASTG D+ P+FRIFNP
Sbjct: 354 RLRMVVASFLTKDLGLDWRRGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNP 413

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465
             Q ++FDPQG FIR +LPEL  VP  +IH P +            L ++YPLP+VDH +
Sbjct: 414 VTQSQKFDPQGRFIRCYLPELARVPDAHIHFPAAMGPLELAACGLRLGVDYPLPVVDHAR 473

Query: 466 ACHHTLNQYY 475
           A   TL +++
Sbjct: 474 ARERTLMRFH 483


>gi|1468977|gb|AAB04997.1| AT-PHH1 [Arabidopsis thaliana]
          Length = 612

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 136/494 (27%), Positives = 223/494 (45%), Gaps = 26/494 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + 
Sbjct: 7   TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      Q  N   +I  +         TK+ +N  Y+   + RD  ++++L  
Sbjct: 65  QSLKALGSDLTLIQTHN---TISAILDCIRVTGPTKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +   P   + +T   
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    +   +          +   +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE+ R++ 
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   L D DL  +  GWQ+ + +  D     R+ NP +QG
Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
            ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD   A   
Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480

Query: 470 TLNQYYAAKKQSLL 483
                   ++  ++
Sbjct: 481 LAKAISRTREAQIM 494


>gi|254830427|ref|ZP_05235082.1| hypothetical protein Lmon1_03662 [Listeria monocytogenes 10403S]
          Length = 467

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 168/480 (35%), Positives = 241/480 (50%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++    K  + Q      F + +E L           K+++NR        RD+  +   
Sbjct: 57  KQE-VDKTALLQIM----FGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + +  ++F DS L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E       +   G   +  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISVRTIWQALQE------NEATEGRAIFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW+ G TGFP++DAAMRQL   GWMHNRLRM+TASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P ++IH P    +         L  +YP PIVDHK+     + +Y  +K+ 
Sbjct: 403 EYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIVDHKERRKLAIARYEFSKEH 462


>gi|170780895|ref|YP_001709227.1| putative deoxyribodipyrimidine photolyase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155463|emb|CAQ00571.1| putative deoxyribodipyrimidine photolyase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 508

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 156/501 (31%), Positives = 244/501 (48%), Gaps = 32/501 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    +VWLR+DLR+ DN A++AA    +  ++ +++   E      +      +++
Sbjct: 17  ADQAHGPTIVWLRDDLRVADNPAMHAAVERGE-PIVVLYVLDEESAGIRPLGGAARWWLH 75

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL ++ +SL   G      +      + + +D    +     + +NR+Y   E+  D  
Sbjct: 76  MSLSRLGESLRGLGSPLVLRRGK----AADVVDDLVREVGAGAVLWNRRYGGAEIAVDTA 131

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           ++K L  R +  +SF  S+L+ P +++N   + ++VYTPF K              P   
Sbjct: 132 IKKDLGDRGLDVRSFQGSLLVEPWTVVNKQGEPFRVYTPFWKTAQDREEPRKPFPAPD-- 189

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP--------IGEQNALHILRKFCKEKVYYYVEQ 233
             L  P          D+      P +          GE   L  L  F   ++  Y  Q
Sbjct: 190 -ALEAPRKAPRSDDLDDWGLLPTKPDWAAGLREACDPGEAAGLQRLEDFVHHELEDYAAQ 248

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA   TS+LS YL  G +SP Q W+R++      +   +  A  +L+EL WREF  H
Sbjct: 249 RDEPAAMTTSRLSAYLRWGEVSPFQVWHRVQRTRGKKVGGDEVNATKFLSELGWREFSYH 308

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           L+   P +   + F+P  +   W++     L AW++G TG P++DA MR L   G +HNR
Sbjct: 309 LLYHQPDLAT-RNFVPRFDAFPWDEPRDDTLGAWQRGETGVPLVDAGMRALWKDGHLHNR 367

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RM+ ASFL+K+LL+DWR GE++F   L+D D A+N   WQW A +G D+ PYFR+FNP 
Sbjct: 368 VRMVVASFLIKNLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFRVFNPV 427

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL-------------DKNDLSLNYPLP 459
           +QG++FDP G +IR ++PEL + P   +H P                   +     YP P
Sbjct: 428 LQGQKFDPSGEYIRSYVPELAHAPRDVVHEPWKAQGDLVASAEDDADASADGGLAAYPSP 487

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           IVD K++    L  Y   K +
Sbjct: 488 IVDLKESRQRALAAYDEIKDR 508


>gi|18026280|gb|AAL16379.1| cryptochrome 2 [Arabidopsis thaliana]
          Length = 612

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 136/494 (27%), Positives = 223/494 (45%), Gaps = 26/494 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + 
Sbjct: 7   TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  N   +I  +         TK+ +N  Y+   + RD  ++++L  
Sbjct: 65  QSLKALGSDLTLIKTHN---TISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I   S++  +L  P  I     + +  +  + K  +   +++ +   P   + +T   
Sbjct: 122 RGISVSSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    +   +          +   +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACLIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE+ R++ 
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP +QG
Sbjct: 361 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
            ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD   A   
Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480

Query: 470 TLNQYYAAKKQSLL 483
                   ++  ++
Sbjct: 481 LAKAISRTREAQIM 494


>gi|148652562|ref|YP_001279655.1| deoxyribodipyrimidine photo-lyase [Psychrobacter sp. PRwf-1]
 gi|148571646|gb|ABQ93705.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter sp. PRwf-1]
          Length = 550

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 186/540 (34%), Positives = 271/540 (50%), Gaps = 73/540 (13%)

Query: 10  HLVWLRNDLRITDNKALY-------AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
            L+W R DLR+ DN AL         A  ++++ + AVF+ TP+QW  H +S  Q   + 
Sbjct: 9   ALMWFRRDLRLHDNTALTLLLEQVVQASQHTESCLQAVFVMTPKQWLAHDMSISQVDLMM 68

Query: 63  ASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            +L  + + L    GI     Q  ++ DSI+ ++++C+   +T +  N +YE+NE +RD 
Sbjct: 69  RTLTHLTRDLHHTLGIKLSVLQAESYSDSIDVIEAFCVDNHITHVGCNYEYEVNEQQRDT 128

Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L KRL    +    + D  +LPP +I      +YKV+TPF K   Q L  +      + 
Sbjct: 129 ALAKRLSKLNIKFNQYHDQCILPPNTIKTGDDTLYKVFTPFYKKWQQTLQISPPVLYDIN 188

Query: 181 AI---RLTGPVTPSNIPRF----------------------------------------- 196
           ++    +   +T  NI +                                          
Sbjct: 189 SLTEGDIKQKLTDLNINQASTDTSSTQNTSSTQHTSSTQSIKDSHQSVLQRFTSHYQLSK 248

Query: 197 --FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL 254
              D   ++    +P GEQ A+  L  F ++ +  Y   RD PA+ GTSQLS YL++G++
Sbjct: 249 NNADTILESARADYPAGEQAAIDRLNSFVQQDIEEYGITRDQPALMGTSQLSAYLTLGII 308

Query: 255 SPRQCWNRLKEEFVDLLIKP------------KSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SPR C+                          KS    W++EL WR+FYRH+    P + 
Sbjct: 309 SPRLCYLTANARLESKSFADNESKLEIFENNSKSDVERWISELAWRDFYRHVTVDRPDIV 368

Query: 303 MGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            G  +   T+ K+ W+ D+   +AW QG TG P+IDAAMR LN  G+MHNRLRM+TA FL
Sbjct: 369 KGAAYKKDTDNKLNWSYDNDDFEAWCQGMTGVPLIDAAMRCLNQTGFMHNRLRMVTAMFL 428

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL +DWR+GE YFM  L+DGD ASNNGGWQW+ASTG D+ PYFRI NP  Q K  D  
Sbjct: 429 TKDLFIDWRLGERYFMQNLIDGDFASNNGGWQWSASTGTDAAPYFRIMNPFSQAKTHDKD 488

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
             FI+ WLPEL ++    +H  +              +NYPLP+++HK+A  + + Q+ A
Sbjct: 489 AIFIKSWLPELTDITANILHDENKLRKALSKQGAFAHVNYPLPMIEHKQARRYAIEQFKA 548


>gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
           29413]
 gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
           29413]
          Length = 479

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 163/478 (34%), Positives = 234/478 (48%), Gaps = 18/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRITDN  L  A  +S +KV+ VF   P    +  ++  +  ++  SL ++Q+
Sbjct: 6   LFWHRRDLRITDNIGLATARQHS-SKVVGVFCLDPNILERDDVAPVRVTYMIGSLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      +     D ++ +           +F+N   E     RD+ +   L+ +
Sbjct: 65  RYVQAGSQLLILRG----DPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIATLKDK 120

Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PAI 182
            I       D +L  P  I + +   Y VYTPF K          + +L           
Sbjct: 121 GIQCLTHNWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLHNVEGLTEAEQ 180

Query: 183 RLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            L        +P   D  F    D +   GE  A   L +F  + +  Y EQR+ P + G
Sbjct: 181 ELAQKAGVKALPTAKDLGFFWDADLIIAPGEAAAQAKLAEFTAKAITEYQEQRNFPGVNG 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPS 300
           TSQLS  L  GV+  R  W    E   +   +  +    +W  EL WREFY+H M  +P 
Sbjct: 241 TSQLSAALKFGVIGIRTVWQTTLEALENSRSEETTTSIRTWQQELAWREFYQHAMYNFPE 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G  +    +   W  +    QAW +G TG+PI+DAAMRQ+N  GWMHNR RMI ASF
Sbjct: 301 LADG-AYRATFKNFPWETNEEHFQAWCEGKTGYPIVDAAMRQMNESGWMHNRCRMIVASF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDLL++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP  Q ++FDP
Sbjct: 360 LTKDLLINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPASQSQKFDP 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
              +IR W+PEL ++ T+Y+            ++ Y  PIVDH+K       +Y   K
Sbjct: 419 DAEYIRQWVPELRSMDTEYLVT-GKITPLERHAVGYVKPIVDHQKQQQLFKQRYQQQK 475


>gi|325963959|ref|YP_004241865.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470046|gb|ADX73731.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 478

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 158/482 (32%), Positives = 228/482 (47%), Gaps = 24/482 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VWLR+DLR+ DN AL AA       +  V+I   +      + +    +++ SL  +
Sbjct: 7   TSIVWLRDDLRLDDNPALAAAVDLG-LPLTVVYILDEDSEGVRPLGSASRWWLHHSLASL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
             SL   G      +          L           LF+NR+Y + E   D  ++    
Sbjct: 66  ASSLEASGSRLLLQRGPAEP----ILKDLAAATNAGHLFWNRRYGLPERTVDAAVKAWAG 121

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           ++ +   S+  ++L  P +I   A   YKV+TPF +A + +    D  S P         
Sbjct: 122 ENGIEALSYQANLLFEPWTIRTGAGGPYKVFTPFWRACLASGDVRDPLSAPPQLPPPPAG 181

Query: 188 VTPS-------NIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            T S          R F         +   +  GE+ A   L  F +     Y   R+IP
Sbjct: 182 KTGSGPAGDALETWRLFPSSPDWSGGLAKTWEPGEEGARQRLEDFLEGSAQDYGTGRNIP 241

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            ++GTS+LSP+L  G +SP + W  ++  F   +    +    + +EL WREF  HL+  
Sbjct: 242 GVEGTSRLSPHLRFGEVSPFRVWREIRGRFPREVP---ADVGIFRSELGWREFCWHLLYT 298

Query: 298 YPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            P +   + F P  ++ EW K     L AW+QG TG+P +DA MRQL   GWMHNR+RM 
Sbjct: 299 NPDLAT-RNFRPEFDRFEWEKPGKDELAAWQQGRTGYPFVDAGMRQLWQTGWMHNRVRMA 357

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFLVK+LL DWR GE +F   L+D D ASN   WQW A +G D+ PY+RIFNP  Q K
Sbjct: 358 AASFLVKNLLADWRTGEAWFWDTLVDADAASNPANWQWVAGSGADASPYYRIFNPVTQSK 417

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FD  G ++R ++PEL  +  + IH P       D    YP P+VD   +    L  Y  
Sbjct: 418 KFDAAGNYLRQYIPELAGLEAKAIHEPWK---AADGLHGYPRPLVDLPGSRERALAAYQK 474

Query: 477 AK 478
            K
Sbjct: 475 LK 476


>gi|332524149|ref|ZP_08400379.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
 gi|332107488|gb|EGJ08712.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
          Length = 505

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 177/487 (36%), Positives = 241/487 (49%), Gaps = 33/487 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVWLR DLR  DN ALY A   +  +V  VF+  PE       + R+  FI  S++ V 
Sbjct: 8   ALVWLRRDLRTEDNAALYHALRAA-RRVWCVFVFDPEILEPLPRADRRVEFIRDSVVGVD 66

Query: 70  KSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L          G              ++ +           ++ +   E   + RD  
Sbjct: 67  AELRALAASHGIDGAGLIVRHG----RPLQEIPRLAAALGAQAVYASHDDEPEALARDAR 122

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-- 179
           +   L    I      D V+     +L      + V+TP+R A ++ L    L S PV  
Sbjct: 123 VRGALADAGIAFHGSKDHVIFERDEVLTQGGGPFSVFTPYRNAWLKKLDDFYLSSYPVER 182

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            A  L        +P   D  F++ +      P G      +L  F  E+V +Y + RD 
Sbjct: 183 HAGALAPKPAGETLPTLADIGFESTNLHALKLPSGPAGGRELLADFL-ERVDHYADWRDF 241

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA++G S L P+L  G +S R    RL  E    L     GA  WL+EL+WR+FY  L+ 
Sbjct: 242 PAVKGPSYLGPHLRFGTVSIR----RLAREAHQRLTAGSRGAEVWLSELVWRDFYHQLLH 297

Query: 297 FYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +P V +G  F P  +++ W        L  AW +G TG+PI+DAAM QL   G+MHNRL
Sbjct: 298 HHPRV-VGGCFKPEYDRLHWEHGKHADELFAAWCEGRTGYPIVDAAMHQLTRTGYMHNRL 356

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI+ASFL KDL +DWR GE +F   L D DLASNNGGWQWAASTG D+ PYFRIFNP  
Sbjct: 357 RMISASFLTKDLGIDWRRGEAWFARHLNDFDLASNNGGWQWAASTGCDAQPYFRIFNPVS 416

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
           Q +RFDP+G FIR +LP+L  +P   +HAP      +       L  +YP P+V H++A 
Sbjct: 417 QSERFDPEGRFIRRYLPQLAKLPDTLLHAPWRARPADLAAAGVVLGRDYPAPVVAHEEAR 476

Query: 468 HHTLNQY 474
             TL ++
Sbjct: 477 ERTLARF 483


>gi|13476703|ref|NP_108272.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
           MAFF303099]
 gi|14027464|dbj|BAB53733.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
           MAFF303099]
          Length = 477

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 161/488 (32%), Positives = 241/488 (49%), Gaps = 25/488 (5%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           +  A +  +V  R DLR+ DN A  AA       V+A++I          + A    +++
Sbjct: 2   SRQAQAPTIVLFRRDLRMGDNAA-LAAAAERGVPVVALYILDETTKGLRAMGAASRWWLH 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +   L + G           D   + +D+         +F+NR+Y+ +EV  D  
Sbjct: 61  HSLAALGDLLRKAGANLFLAHGRTEDAVAKAIDA----SGANCVFWNRRYDPSEVAVDAR 116

Query: 123 LEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L+  L+ +     SFD ++L  P  +   +   YKV+TPF KA+   +   D    P   
Sbjct: 117 LKAALREKGLTALSFDGALLHEPSLLKTGSGGFYKVFTPFWKAMADKVDVRDPIDTPGQI 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
               G +    +      P +      +   +  GE+ A   L +F +  +  Y  QRD 
Sbjct: 177 DGWRGELGGLRLDELDLLPSKPDWAYGLRETWTPGEKGAQARLGQFIEHGLANYERQRDY 236

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P    TS+LSP+L+ G ++P Q +  L+           SG   +  E+ WREF  HL+ 
Sbjct: 237 PGQPSTSRLSPHLTFGEITPFQIFAALRR-------SKSSGTSKFRAEIGWREFSYHLLF 289

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P +  G+ F P  + + W  D   L+ W++G TG+PI+DA MR+L   GWMHNR+RMI
Sbjct: 290 HNPDLS-GRNFRPEFDAMSWRDDIRALRTWQRGLTGYPIVDAGMRELWRTGWMHNRVRMI 348

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+KDL++DWR GE++F   L+D D A+N   WQW A +G D  PYFRIFNP +QG+
Sbjct: 349 VASFLIKDLMIDWRHGEKWFWDTLVDADAANNPASWQWVAGSGADPAPYFRIFNPVLQGE 408

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHT 470
           +FDP G ++R  +PE++ +P +YIH P              L   YP PIVDH  A    
Sbjct: 409 KFDPHGDYVRQHVPEISALPDRYIHRPWEAPAAVLKDKGIVLGKTYPNPIVDHGAARERA 468

Query: 471 LNQYYAAK 478
           L  Y + K
Sbjct: 469 LIVYQSLK 476


>gi|6594296|dbj|BAA88423.1| blue light photoreceptor [Adiantum capillus-veneris]
 gi|6594300|dbj|BAA88425.1| blue light photoreceptor [Adiantum capillus-veneris]
          Length = 699

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 140/493 (28%), Positives = 229/493 (46%), Gaps = 24/493 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A    +VWLR DLR+ DN AL AA    +  V+ VFI +PE+ RQ         ++  SL
Sbjct: 2   AKPCTIVWLRRDLRLEDNPALCAAGRIGN--VVPVFIWSPEEERQFHPGRVSRWWLKQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +Q+  SL   G+     + +   D++  L         T++FYN  Y+   + RD  +++
Sbjct: 60  IQLDVSLRSFGVPLVMRKST---DTLGTLQELIKATGATQVFYNHLYDPISLVRDHHVKQ 116

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L Q  +  +SF+  +L  P  +LN   + +  +  + +  +    + D   LP   +  
Sbjct: 117 GLTQSGIQVQSFNGDLLYEPWEVLNDDGKPFTSFESYWQKCLNMPFEPDSPLLPPRRLTS 176

Query: 185 TGPVTPSNIPR---FFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                P+  P      D   ++ + +    +  G  NA   L  F    +  Y   R   
Sbjct: 177 IAGSIPTYTPEELGLEDETEKSSNALLARAWAPGWSNADRALEAFLAGPLLEYSRNRHKI 236

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSP++  G +S R+ ++ ++        D     +   + ++  + +RE+ R+
Sbjct: 237 DGPTTSLLSPHMHFGEVSVRKVYHSVRRLQLLWAKDGSKLGEESIYFFMRSIGFREYSRY 296

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +  +   +   W  D    +AW+QG TG+P++DA MR+L   GW+HNR+
Sbjct: 297 LSFNFP-FTHERSLLSNLKSFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNRV 355

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R+ NP  
Sbjct: 356 RVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRMDNPQT 415

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC 467
           +G + DP G ++R WLPEL  +PT++IH P             +L  NYP PIV+   A 
Sbjct: 416 EGYKHDPVGEYVRRWLPELVRLPTEWIHHPWDAPPAVLRAAGVELGSNYPRPIVEVAAAR 475

Query: 468 HHTLNQYYAAKKQ 480
                      +Q
Sbjct: 476 ERLRQAVAQMWEQ 488


>gi|311106052|ref|YP_003978905.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8]
 gi|310760741|gb|ADP16190.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans A8]
          Length = 472

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 193/469 (41%), Positives = 269/469 (57%), Gaps = 9/469 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+WLR DLR  DN     A       V A+F+A P QWR HG +  +  F   +L ++ 
Sbjct: 3   TLLWLRTDLRAHDNP--ALAAAAEAGTVTALFLAAPGQWRLHGDAPTKVDFWLRNLRELS 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L + GI  +     ++ ++ + L  +C    + ++  N ++ +NE RRD  +  RLQ 
Sbjct: 61  RELGRLGIPLRLLTVPDWSNAPDALADFCRTHAIGQVHANAEWAVNERRRDAAVAARLQA 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---LT 185
             V       + LL PG++L    + Y+VYTP+ +A  + L  A LR+LP P  +     
Sbjct: 121 LGVDWTLHHGASLLRPGTVLTGKGECYRVYTPYARACRERLRTAPLRALPAPRAQTPPPW 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                      F+ P   +  ++P GE  A   L  F    +  Y EQRD P++  TS L
Sbjct: 181 PADPLPAAFEGFEAPADPVRALWPAGEDAASERLEAFADGVIDAYQEQRDFPSLPATSCL 240

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ GVLSP Q            +   K GA +W+NEL+WREFY+HL+A +PS+ M +
Sbjct: 241 SPYLAAGVLSPGQALRAALAANHGEVDGGKRGAATWINELLWREFYQHLLAAHPSLSMHQ 300

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P  P T  + W      L+AW+QG TG PI+DAAMRQL  +GWMHNRLRM+TA FL K+L
Sbjct: 301 PMKPETAAVPWRDAPDDLRAWQQGQTGIPIVDAAMRQLLALGWMHNRLRMVTAMFLSKNL 360

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR+GE +FM+QL+DGDLA+NNGGWQW+ASTG D+VPYFRIFNP  Q ++FDP G F+
Sbjct: 361 LIDWRLGEAWFMAQLVDGDLAANNGGWQWSASTGADAVPYFRIFNPLSQSRKFDPDGVFL 420

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           R WLPEL ++ ++ IH P            YPL IVD  ++    L  +
Sbjct: 421 REWLPELAHLDSRAIHDPSPMERAQA---GYPLAIVDLAQSRLRALEAF 466


>gi|1468975|gb|AAB04996.1| AT-PHH1 [Arabidopsis thaliana]
          Length = 612

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 136/494 (27%), Positives = 223/494 (45%), Gaps = 26/494 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + 
Sbjct: 7   TIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      Q  N   +I  +         TK+ +N  Y+   + RD  ++++L  
Sbjct: 65  QSLKALGSDLTLIQTHN---TISAILDCIRVTGPTKVVFNHLYDPVSLVRDHTVKEKLVE 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           R I  +S++  +L  P  I     + +  +  + K  +   +++ +   P   + +T   
Sbjct: 122 RGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIESVMLPPPWRLMPITAAA 181

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    +   +          +   +  G  NA  +L +F ++++  Y +       
Sbjct: 182 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R  +   + +      D   + +  A  +L  +  RE+ R++ 
Sbjct: 242 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 302 FNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   L D DL  +  GWQ+ + +  D     R+ NP +QG
Sbjct: 361 IVSSFGVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIPDGHELDRLDNPALQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
            ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD   A   
Sbjct: 421 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 480

Query: 470 TLNQYYAAKKQSLL 483
                   ++  ++
Sbjct: 481 LAKAISRTREAQIM 494


>gi|299135199|ref|ZP_07028390.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
 gi|298590176|gb|EFI50380.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
          Length = 485

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 161/497 (32%), Positives = 234/497 (47%), Gaps = 30/497 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---ISARQ 57
           M A  A    +VW R+DLR++D+ AL AA  ++ A +I +++    +  +HG   + A  
Sbjct: 1   MNAPAA--TAIVWFRDDLRLSDHAALIAA-RDAGATLICLYVLDDTETGKHGPRSLGAAA 57

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             ++  SL  +   L + G      +     D+ E L     +     +F+       E 
Sbjct: 58  QWWLANSLRALDTDLKKLGQHLVLRRG----DAHEVLPKLAREANAKAVFWIDSEVSAEA 113

Query: 118 RRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            R + + + L+   V        +L  P SI N      +V+TPF K +     Q +   
Sbjct: 114 ARARDVAEALKEIGVEVHVSASDLLASPQSIRNKEGHGLRVFTPFWKRVRA---QGEPPR 170

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVY 228
                 +L  PV         D+  +   P +  G        E  A   L  F    + 
Sbjct: 171 PLAAVRKLPPPVVSLKSENLEDWQLEPTRPDWAGGFRETWTPGEAGAHRRLHDFLDGAIK 230

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y E RD P     S LSP+L  G +SPRQ ++  +    +           +L+EL WR
Sbjct: 231 GYAEGRDFPGKDHASHLSPHLRFGEISPRQVFHAAR-FAAERHPALSRDIEKFLSELGWR 289

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF RHL+  +P +          +   W +D+  L+AW+QG TG+PI+DA MR+L   G 
Sbjct: 290 EFCRHLLFDHPDLHRHN-LQSSFDDFPWRRDAKALRAWQQGRTGYPIVDAGMRELWHTGA 348

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR+RM+TASFLVK LL+DWR GE++F   L+D D  SN G WQW A  G D+ PYFRI
Sbjct: 349 MQNRIRMVTASFLVKHLLLDWRDGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRI 408

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVD 462
           FNP +QG++FDP G ++  W+PEL+ +P   IH P              L   YP PIVD
Sbjct: 409 FNPILQGEKFDPDGAYVARWVPELSKLPPALIHKPWEATPMELAAAGVTLGKTYPEPIVD 468

Query: 463 HKKACHHTLNQYYAAKK 479
           HK A    L  Y   ++
Sbjct: 469 HKDARERALAAYRRTRR 485


>gi|161522875|ref|YP_001585804.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
           17616]
 gi|189348291|ref|YP_001941487.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
           17616]
 gi|160346428|gb|ABX19512.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
           17616]
 gi|189338429|dbj|BAG47497.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
           17616]
          Length = 505

 Score =  399 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/494 (30%), Positives = 236/494 (47%), Gaps = 31/494 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R+D R+ DN AL  A  +    V+ V++  P    +  +   Q  +++ SL ++
Sbjct: 12  PVVVWFRDDQRLGDNPALCHAVASGH-PVVCVYVHDPAPSIRRPMGGAQRWWLHESLGKL 70

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +LS  G      +        E +  + +     K+ +NR+Y       D  +++ L 
Sbjct: 71  DDALSALGGSLIVLRGDEH----EAIRDFAVGIGAAKVVWNRRYSKAHTGTDASIKQDLV 126

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R I  S F+  +L  P ++L      Y+V++ + +A  ++ +           I     
Sbjct: 127 GRGIAVSTFNGHLLHEPWTVLTREGLPYQVFSAYWRAACRDDLSPPPPLPAPSRIAFFPV 186

Query: 188 VT--PSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                 ++        Q   P         +  GE+ A   L  F +  +  Y + RD+P
Sbjct: 187 PHNVTPHVCTLRALGLQPTAPDWASGLRLTWRCGEEAARQRLDAFLEHSLRDYADMRDLP 246

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWN--------RLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           A   TS+LSPYL  G +S RQ W           +    DL          +L+E+ WRE
Sbjct: 247 AAHATSRLSPYLRFGNISVRQVWYAASSAASAMQRTRKADLGDPQSGPLNKFLSEIGWRE 306

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F  HL+  +P +     F    + + W  D + L+ W+ G+TG+P++DA MR+L   GWM
Sbjct: 307 FSYHLLYHFPPL-HQVNFRRQFDSMPWRDDPNALRKWQTGHTGYPLVDAGMRELWHTGWM 365

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM+ ASFL K LL+DWR GE +F   L+D D ASN   WQW + +G D+ PYFRIF
Sbjct: 366 HNRVRMVVASFLSKHLLIDWREGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIF 425

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463
           NP +QG++FDPQG + RHW+PEL+ +  + IHAP +   +        L   YP PIVDH
Sbjct: 426 NPVLQGQKFDPQGEYTRHWVPELSKMSAEKIHAPWTASAEQLHDACVSLGRTYPFPIVDH 485

Query: 464 KKACHHTLNQYYAA 477
           + A    L      
Sbjct: 486 QAARTRALESVKRV 499


>gi|71065000|ref|YP_263727.1| deoxyribodipyrimidine photo-lyase type I [Psychrobacter arcticus
           273-4]
 gi|71037985|gb|AAZ18293.1| Deoxyribodipyrimidine photo-lyase type I [Psychrobacter arcticus
           273-4]
          Length = 541

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 186/516 (36%), Positives = 262/516 (50%), Gaps = 50/516 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W R DLR+ DN AL A C  ++   AK+ AVF  TPEQW+ H +S  Q   I  +L  
Sbjct: 25  LMWFRRDLRVHDNTALAAICERANTDNAKLSAVFFLTPEQWQTHDMSLTQLDHIARTLPI 84

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L    I      C +F D I  L + C    ++ +  N +YE NE+ RD+ L K+L
Sbjct: 85  LAQKLQALNITLTVQICPSFTDCIAALSALCESNNISCVMANHEYEGNEIARDEQLTKQL 144

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               +    + D  +LPP +I  +   MY+V+TPF K     L   D++    PAI    
Sbjct: 145 AKTDIEFIRWHDQCILPPQTITTNDNSMYQVFTPFYKKWRHTLEVGDIQIHTAPAITNNE 204

Query: 187 PV--------------------------------TPSNIPRFFDYPFQAIDPMFPIGEQN 214
            +                                         D         +P GE  
Sbjct: 205 QINLISSEFSANTIQAIEALCKETVHDYQQYLQTHECYQYIDTDKQISQARTAYPAGEAE 264

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           A H L +F  + + +Y   RD+P++  TS LS YL+IG LSPR C+ +  +   +L    
Sbjct: 265 ACHRLTQFISDDINHYDVSRDVPSLHATSHLSAYLTIGALSPRLCYLQATKALGELHRND 324

Query: 275 --------KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK-IEWNKDSHLLQA 325
                    +    W++EL WR+FYRH++ + P +   + +   T+K I W+ D     A
Sbjct: 325 GDNFDSGDNNDINRWISELAWRDFYRHVLDYKPELIRHQAYKHETDKKINWSYDEDAFAA 384

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W++G TG P++DAAMR LN  G+MHNRLRM+TA FL KDLL+DWR GE YFM QL+DGD 
Sbjct: 385 WREGKTGVPLVDAAMRCLNATGFMHNRLRMVTAMFLTKDLLIDWRWGERYFMQQLIDGDF 444

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           ASNNGGWQW+ASTG DS PYFRI NP  Q K  D  G F++ WLPEL  +P   +H+   
Sbjct: 445 ASNNGGWQWSASTGTDSAPYFRIMNPFSQAKTHDSDGIFLKTWLPELEPIPASILHSEDK 504

Query: 446 WLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
                        ++YP+P+V+HK A    + ++  
Sbjct: 505 MRKALSKNGAFADIDYPIPMVEHKLARQLAIAEFKK 540


>gi|87120903|ref|ZP_01076795.1| putative photolyase [Marinomonas sp. MED121]
 gi|86163741|gb|EAQ65014.1| putative photolyase [Marinomonas sp. MED121]
          Length = 475

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 148/485 (30%), Positives = 240/485 (49%), Gaps = 33/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR++DN AL AA    D  V+ ++I   +   +  +      +++ SL  +  
Sbjct: 7   IHWFRQDLRLSDNPALSAAVSQGD--VLPIYILDDKNANEFAMGGASRWWLHHSLTALDA 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
           SL+    +++        + +E L     +  VT + +NR YE   ++RD+ +++ L+  
Sbjct: 65  SLTACLNLYK-------GEPLEVLLELIERLDVTHVVWNRCYEPWRMQRDEKIKQTLKEI 117

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLPVPAIRLTGPV 188
            +  +S++ S+L  P  I       YKV+TPF RK  ++  +       P          
Sbjct: 118 GIQVQSYNASLLWEPWQIKKPDGTAYKVFTPFYRKGCLKAEMPRQPLPRPDNQAVYLKDD 177

Query: 189 TPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               +      P     +    ++ IGE  A     KF +E +  Y E R+IP+    ++
Sbjct: 178 KGQALDGLNLLPTIAWDEPFKDLWQIGEDKAQSQFFKFLEEGLASYKEGRNIPSKPFVTR 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP++  G +SP Q W  ++       +        + +EL WREF    +   PS+   
Sbjct: 238 LSPHIHFGEISPNQLWYGVQ------SVADNEHVDHFCSELGWREFSYSQLFVNPSLPTH 291

Query: 305 KPFIPWTEKIEWNKDSH-----LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                  +   W ++       LL+AW+QG TG P++DA MR+L   G+MHNR+RMI AS
Sbjct: 292 N-LQSKFDAFPWREEDTSSKDSLLRAWQQGKTGIPMVDAGMRELWQTGYMHNRVRMIVAS 350

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK+L + W  GE +F   LLD DLA+N+  WQW A  G D+ PYFRIFNP +QG+RFD
Sbjct: 351 FLVKNLRIHWHQGERWFWDTLLDADLANNSASWQWVAGCGADAAPYFRIFNPVVQGQRFD 410

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
            +G +I+ ++PE++ +P +Y+ +P    +         L   YP PI+D K +    L  
Sbjct: 411 AEGDYIKKFVPEISLLPKKYLFSPWEAPELVLQEAGVKLGETYPQPIIDLKASREAALEA 470

Query: 474 YYAAK 478
           + + K
Sbjct: 471 FKSLK 475


>gi|124265897|ref|YP_001019901.1| deoxyribodipyrimidine photo-lyase type I [Methylibium
           petroleiphilum PM1]
 gi|124258672|gb|ABM93666.1| Deoxyribodipyrimidine photo-lyase type I [Methylibium
           petroleiphilum PM1]
          Length = 497

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 173/500 (34%), Positives = 243/500 (48%), Gaps = 28/500 (5%)

Query: 1   MKATTAMSV--HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58
           M   +  ++   LVW R DLR  D+ ALY A   +  +V   F+   E       + R+ 
Sbjct: 1   MDKASGKTLDAALVWCRRDLRAHDHAALYHALRAA-RRVWVAFVFDTEILDPLPRTDRRV 59

Query: 59  HFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            FI  SL+ +   L   G                + + +        V  ++ N  YE  
Sbjct: 60  EFIRDSLVDLDAQLHTLGRSHGTEGVGLIVRHGRARDEIPRLAAALHVQAVYANTDYEPA 119

Query: 116 EVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            V RD  +   L    I      D V+     +L  A   Y V+TP++ A ++ L    L
Sbjct: 120 AVARDAQVRGALAQTGIAFHPAKDQVVFDTDEVLTGAGTPYGVFTPYKNAWLKKLEPFYL 179

Query: 175 RSLPVP----AIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKV 227
           ++ PV     A+        + +P      F+  +        G      +L  F  E++
Sbjct: 180 QAYPVGRHAGALAPRPAGEAAGVPTLAAIGFEPTNLAALKLAPGTAGGRALLEDFGDERI 239

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y + RD PA++G S LS +L  G LS R+    L     D       GA  WL+ELIW
Sbjct: 240 DRYDQTRDFPAVKGPSYLSVHLRFGTLSIRE----LARLAWDRARAGSRGAEVWLSELIW 295

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLN 344
           R+FY  ++  +P V + + F P  +KI+W    H   L  AW +G TG+P++DAAM Q+N
Sbjct: 296 RDFYHQVLHHHPQV-VERSFKPEYDKIKWEHGKHADALFAAWCEGRTGYPLVDAAMLQIN 354

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+MHNRLRM+ ASFL KDL +DWR GE YF  +L D DLA+NNGGWQWA+S+G D+ P
Sbjct: 355 QTGYMHNRLRMVVASFLCKDLGLDWRRGERYFAEKLNDYDLAANNGGWQWASSSGCDAQP 414

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPL 458
           YFRIFNP  Q ++FD QG FIR +LP+L  +P   +HAP              L  +YP 
Sbjct: 415 YFRIFNPVSQSQKFDAQGKFIRRYLPQLAALPDAALHAPWDAKPLDLVAAGLVLGRDYPE 474

Query: 459 PIVDHKKACHHTLNQYYAAK 478
           PIV H+ A   TL +Y   K
Sbjct: 475 PIVRHELARERTLARYAVVK 494


>gi|254418176|ref|ZP_05031900.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
 gi|196184353|gb|EDX79329.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
          Length = 488

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 171/486 (35%), Positives = 245/486 (50%), Gaps = 22/486 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    ++W R DLR+ DN ALY A       ++ VFI   +  R     A    ++ 
Sbjct: 4   ACVATKPVVLWFRRDLRLNDNPALYHAVATG-RPILPVFILDRDPDR--PAGAASLWWLD 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL ++G      +     DS+  L S         LF NR +E     RD  
Sbjct: 61  KSLRALDDSLRERGSRLILRRG----DSLTQLQSLIEDTGADALFMNRLFEPAAFARDAE 116

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSL 177
           +   L+   V C+ F+ S+L  PG++LN +   YKV+TPF KAL+            R +
Sbjct: 117 IAHELKSAGVDCRGFNGSLLARPGAVLNGSDAPYKVFTPFMKALLATAEPPPPTTAPRRI 176

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             P    T  +    +        +  D  +  GE  A   L  F    +  Y + RD P
Sbjct: 177 ATPDAVQTESIDDWRLHPTRSDWSKGFD--WTPGEAGADAALSDFLARGLKTYAKGRDHP 234

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A+  TS+LSP+L  G +SP +   R +       + P   A  ++ EL WR+F  HL+  
Sbjct: 235 ALPTTSRLSPHLHWGEISPWRAAQRARGAADAGAV-PAGEADKFVAELGWRDFSAHLLHH 293

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P++   + F P  E + W  D   L+AWK+G TG+P++DA MRQL T GWMHNR+RM+ 
Sbjct: 294 FPTIT-DRAFRPEYESMPWRGDPEGLEAWKRGRTGYPLVDAGMRQLWTTGWMHNRVRMVV 352

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVK LL+DWR GE +F   L+D DLASN   WQW A +G D+ PYFRIFNP  QG++
Sbjct: 353 ASFLVKHLLIDWREGEAWFWDTLVDADLASNVQNWQWVAGSGADAAPYFRIFNPITQGEK 412

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTL 471
           FD  G ++R W+PEL  +P +++ +P +            L  +YP PI+DH +A    L
Sbjct: 413 FDATGGYVRRWVPELRRLPDRWLPSPWTAPPEVLRDAGVRLGKDYPHPILDHAQARARAL 472

Query: 472 NQYYAA 477
           +     
Sbjct: 473 DALKTV 478


>gi|195995779|ref|XP_002107758.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens]
 gi|190588534|gb|EDV28556.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens]
          Length = 513

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/497 (31%), Positives = 236/497 (47%), Gaps = 25/497 (5%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           +++ +   LVWLR DLR+ DN AL+ A       +I V+I   +   +         ++Y
Sbjct: 2   SSSKIPCTLVWLRRDLRLIDNPALFHAAKRGQ--LITVYIFDEDCSGKRRTGQACLWWLY 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  ++  LSQ  I           D+   L     +     +++NR YE  E  RD  
Sbjct: 60  HSLKSLRNQLSQWNIPLIVKSG---KDAFTILKKLLDRYNADAIYWNRCYEPFEYNRDYS 116

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +EKR    ++  +++ D VL  P  + N   Q ++++  +    +           P   
Sbjct: 117 IEKRFVARKIKVETYQDRVLYEPWKVKNGKGQPFQLFPCYWNQCLSLPQPRKPYDKPKFT 176

Query: 182 IRLTGPVT--------PSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
           +   G V            +    D      +   +  GE+ A+  L++F K  +  Y E
Sbjct: 177 VHNQGCVEYKYDDAGVWQLLASIADNDTSTRLQDFWHPGEEGAIQKLKRFMKNSLKVYSE 236

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL---KEEFVDLLIKPKSGAFSWLNELIWRE 289
           +RD   +  TS LSPYL  G +SP   W+     +      +  P      +L EL WRE
Sbjct: 237 KRDCIWLDATSNLSPYLHFGEISPFTIWHTACFMRHSTTRSISVPLHCTKRYLTELGWRE 296

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F  HL+  YP +   K F     +++   D   L AW+ G TG+PI+DA MRQL+  G+M
Sbjct: 297 FTCHLLFHYPDLPE-KSFKSNFHQLKLEIDEEKLHAWQNGSTGYPIVDAGMRQLSQAGFM 355

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            NR+RMI ASFL+  LL+ W+ GEE+F ++L+D DLA +   WQW A  G D  PYFR+F
Sbjct: 356 PNRVRMIVASFLIMHLLIPWQKGEEWFWNRLVDADLAQSVCNWQWIAGCGPDVAPYFRMF 415

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           NP IQG++FD +G ++R W+PE+  +P  Y+  P              L   YP PIV+H
Sbjct: 416 NPVIQGEKFDAEGYYVRKWIPEIAKLPNSYVQKPWEAPPTMLKIANITLGKTYPRPIVEH 475

Query: 464 KKACHHTLNQYYAAKKQ 480
           K A    L  Y   K++
Sbjct: 476 KVARELALATYSQLKRK 492


>gi|45935260|gb|AAS79665.1| cryptochrome 2A apoprotein [Pisum sativum]
 gi|45935262|gb|AAS79666.1| cryptochrome 2A apoprotein [Pisum sativum]
          Length = 629

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 140/495 (28%), Positives = 222/495 (44%), Gaps = 32/495 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL  + 
Sbjct: 6   TIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +    D ++  L       + TK+ +N  Y+   + RD  ++++L  
Sbjct: 64  QSLKSLGAKLVLIKT---DSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  KS++  +L  P  + +     +  + PF +  +   ++      P   I   G V
Sbjct: 121 LGISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKV 180

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    D   +          +   +  G  NA   L +F  +++  Y + R     
Sbjct: 181 ---ERCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGG 237

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G LS R+ +   + + +    +     K     +L  +  RE+ R+L 
Sbjct: 238 DSTSLLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLC 297

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       WN D    + W+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 298 FNFP-FTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRV 356

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ +    D     R+ +P I G
Sbjct: 357 IVSSFAVKMLLLPWKWGMKYFWDTLLDADLECDILGWQYISGCLPDGHELERLDDPEILG 416

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH- 468
            +FDP+G ++R WLPEL  +PT++IH P +           +L  NYP PI+D   A   
Sbjct: 417 AKFDPEGEYVRQWLPELARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIIDIDLAREK 476

Query: 469 --HTLNQYYAAKKQS 481
               + + +  +  S
Sbjct: 477 LTQAIFKMWEIQAAS 491


>gi|330824678|ref|YP_004387981.1| deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
           K601]
 gi|329310050|gb|AEB84465.1| Deoxyribodipyrimidine photo-lyase [Alicycliphilus denitrificans
           K601]
          Length = 491

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 181/490 (36%), Positives = 257/490 (52%), Gaps = 31/490 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYAS 64
           A +  LVWLR DLR  D+ ALY A      +V   F+   +        S R+  FI+AS
Sbjct: 5   ATASALVWLRRDLRCDDHAALYHALRRF-GRVYCAFVFDTDILDALPTRSDRRVEFIHAS 63

Query: 65  LLQVQKSLSQK-------GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           +L++ + L++        G             + E +        V ++  NR YE   +
Sbjct: 64  VLELHQGLAELAARSGAPGGGLIVRHGP----APECIVRLARSLGVQEVLANRDYEPQAI 119

Query: 118 RRDKLLEKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ + + LQ   I  S + D  LL    +L    + Y V+TP+R+A +Q L    L  
Sbjct: 120 ERDRRVARALQAAGIAFSDYKDQALLDRDEVLTRQGRPYGVFTPYRRAWLQRLDAFQLTP 179

Query: 177 LPV--PAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYV 231
            PV   A  L  P     +P   +  F   +      P G + A  +L+ F   ++  Y 
Sbjct: 180 YPVASHARHLAAPPAGECLPTLQELGFARTNLHELPLPTGMRGAQLLLQDFMP-RMAAYH 238

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E RD P  +G S LS +L  G +S R    +L         +   GA +WL+EL WR+FY
Sbjct: 239 EARDYPGRKGVSYLSVHLRFGTVSIR----QLAALAAAQAAQGCEGAQAWLSELAWRDFY 294

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             ++  +P V   + F P  ++++W+    L QAW    TG+P++DAAMRQL+  G+MHN
Sbjct: 295 FMILWHHPQVAT-QSFKPVYDRVQWDDAPELWQAWCGARTGYPLVDAAMRQLHQTGYMHN 353

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLRM+ ASFL KDL +DWR GE +F + L D DLA+NNGGWQWAASTG D+ P+FRIFNP
Sbjct: 354 RLRMVVASFLTKDLGLDWRRGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPWFRIFNP 413

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465
             Q +RFDPQG FIR +LPEL  VP  +IH P +            L ++YPLP+VDH +
Sbjct: 414 VTQSQRFDPQGRFIRCYLPELARVPDAHIHFPAAMGPLELAACGLRLGVDYPLPVVDHAR 473

Query: 466 ACHHTLNQYY 475
           A   TL +++
Sbjct: 474 ARERTLMRFH 483


>gi|284800868|ref|YP_003412733.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578]
 gi|284994054|ref|YP_003415822.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923]
 gi|284056430|gb|ADB67371.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578]
 gi|284059521|gb|ADB70460.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923]
          Length = 467

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 164/480 (34%), Positives = 242/480 (50%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++N        +RD+  +   
Sbjct: 57  KQEVDK-----TAHLQIMFGEPIECFQQLKDTLPSWDKVYFNLDETGYGAKRDEAAQAFF 111

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + ++  ++F DS L     +     + YK++TP+ K   + + +   +    P      
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKMTLKPENIWKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  +  Y + RD P +  TS LS
Sbjct: 172 SLFPKYEEQFAEMTCDL--PILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G +S R  W  L+E       +   G   +  EL WR+FY  +   +P+    +P
Sbjct: 230 RYLRTGEISVRTIWQALQE------NEATEGRAIFEKELCWRDFYNMIYVSFPNQ-KNEP 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  IEW  +    +AW+ G TGFP++DAAMRQL   GWMHNRLRM+TASFL KDLL
Sbjct: 283 IQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTKDLL 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FIR
Sbjct: 343 IDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGKFIR 402

Query: 427 HWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++ EL N+P ++IH P    +         L  +YP P++DHK+     + +Y  +K+ 
Sbjct: 403 KYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 462


>gi|282899861|ref|ZP_06307822.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
 gi|281195131|gb|EFA70067.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
          Length = 484

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/489 (34%), Positives = 237/489 (48%), Gaps = 20/489 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   T   + L W R DLR +DN  L  A      KV+ VF   P    Q  I+  +  +
Sbjct: 1   MGYLTMSDLILFWHRRDLRTSDNTGLGVA-REKTKKVVGVFCLDPNILGQDDIAPARITY 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L  ++   SQ G           D+ +  + +         +F+N   E     RD
Sbjct: 60  MIGCLKSLESLYSQAGSQLLILH----DNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRD 115

Query: 121 KLLEKRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           + +   L+ R I   +   D +L  P +IL+ A   Y VYTPF K          +  L 
Sbjct: 116 RDVTLALKTRGIETLEKNWDQLLHSPDTILSGAGTPYTVYTPFWKKWHSQPKVEPIEILA 175

Query: 179 VPAI------RLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYV 231
                      +        +P   D  F     +    GE  A   L  F    +  Y 
Sbjct: 176 NCENLTAREEEIAEKSGVIKLPTARDLGFIWSGELILEPGEVAAWERLTDFLDCAIDEYE 235

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREF 290
           E+R+ PAI GTS LSP L  GV+  R  W + +E       +   +G  +W  EL WREF
Sbjct: 236 EKRNYPAIDGTSLLSPALKFGVIGIRTIWQKTQELLAISNSQEFSNGIITWQKELAWREF 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y+H M  +P +  G  +    +   W+ +    QAW +G TG+PI+DAAMRQLN  GWMH
Sbjct: 296 YQHAMYHFPELAEG-AYRDVFKNFPWSDNQEHFQAWCEGKTGYPIVDAAMRQLNETGWMH 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RMI ASFL KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFN
Sbjct: 355 NRCRMIVASFLTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFN 413

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
           P+ Q ++FD  G +IRHW+ EL +V T+Y I    + L++  +   YP  IVDHKK    
Sbjct: 414 PSSQAQKFDSDGEYIRHWVGELASVETEYLIGGNITPLERQSVG--YPTSIVDHKKQQAL 471

Query: 470 TLNQYYAAK 478
               Y   K
Sbjct: 472 FKQLYQQQK 480


>gi|118497711|ref|YP_898761.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           novicida U112]
 gi|194323683|ref|ZP_03057459.1| deoxyribodipyrimidine photolyase family protein [Francisella
           tularensis subsp. novicida FTE]
 gi|208779776|ref|ZP_03247120.1| deoxyribodipyrimidine photolyase family protein [Francisella
           novicida FTG]
 gi|118423617|gb|ABK90007.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
 gi|194322047|gb|EDX19529.1| deoxyribodipyrimidine photolyase family protein [Francisella
           tularensis subsp. novicida FTE]
 gi|208744231|gb|EDZ90531.1| deoxyribodipyrimidine photolyase family protein [Francisella
           novicida FTG]
          Length = 464

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/483 (32%), Positives = 247/483 (51%), Gaps = 30/483 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  + + W R DLR+ DN ALY A    +   I +FI    Q     I +    +++ SL
Sbjct: 2   SKKIAIHWFRQDLRLADNPALYQASQADET--ITIFILDKNQ----DIGSASKLWLHHSL 55

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL  K     ++      + +E +     +  +T  ++NR Y+   + RD  +++
Sbjct: 56  NSLNSSLDNK---LNFYSG----NPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQ 108

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IR 183
            LQ H++   SF+ S+L+ P          YKVYTPF K LI+        + P  + +R
Sbjct: 109 FLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLR 168

Query: 184 LTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                   +  +  +  + +Q I   + IGE  +  IL +F   KV  Y   RD  +   
Sbjct: 169 KLNNSENLDSLKLLEPKHSWQNIIKQWQIGESASHQILEEFLNNKVKEYKTARDFMSTDS 228

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSPYL  G +SP Q +N ++      L    +    ++ EL+WR+F  + + +YP +
Sbjct: 229 TSKLSPYLHFGEISPSQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL 283

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+MHNR+RMI ASFL
Sbjct: 284 -HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFL 342

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q ++F+  
Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402

Query: 422 GTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSL--NYPLPIVDHKKACHHTLNQYY 475
             +IR ++PEL  +P + I  P       L +  ++L  NYP PIVD KK+    L  + 
Sbjct: 403 -EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQLHN 461

Query: 476 AAK 478
             K
Sbjct: 462 QIK 464


>gi|167646881|ref|YP_001684544.1| deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31]
 gi|167349311|gb|ABZ72046.1| Deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31]
          Length = 478

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 164/475 (34%), Positives = 227/475 (47%), Gaps = 15/475 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VWLRNDLR+ DN AL AA       VI ++I   E      +      ++  SL  +  
Sbjct: 10  IVWLRNDLRLADNPALIAAAATG-RPVIPLYILD-ETPGVRPMGDASLWWLDKSLAALDA 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129
           +L   G      +          L+          + +NR Y+   + RD  L+  L+  
Sbjct: 68  ALRATGSRLILRRGPAR----AVLEEVVADAEAAAVVWNRLYDAASIERDSALKAWLKDE 123

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIRLT 185
            V C+SF+  +L  P ++ N + Q YKV+TP+ +A    L    +   P     PA    
Sbjct: 124 GVACESFNAGLLNEPWTVKNGSGQPYKVFTPYWRAARDQLHDVHVEPAPKTLAAPAHWPH 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           G              +     ++  GE  AL  L  F    V  Y  +RD P ++ TS+L
Sbjct: 184 GDALEDWTLHPALLDWSTGFDLWTPGEAGALARLDDFLSGPVQDYGHKRDFPGVEATSRL 243

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G + PRQ W   +         P      +L+E+ WREF   ++   P +    
Sbjct: 244 SPHLHFGEIGPRQVWAAARHAAE-AGDAPAGQVEKFLSEIGWREFNHSILFHNPDLP-HT 301

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P  +   W K+    +AW +G TG+PI+DA MR+L   G+MHNR+RMI ASFLVK L
Sbjct: 302 SFRPEFDGFPWVKNPAAFEAWSRGQTGYPIVDAGMRELWATGFMHNRVRMIVASFLVKHL 361

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE +F   L+D DLASN G WQW A  G D+ PYFRIFNP  QG++FDP G ++
Sbjct: 362 LIDWREGEAWFWDTLVDADLASNVGNWQWVAGGGADAAPYFRIFNPIAQGQKFDPAGAYV 421

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL  +P   IH P         +    YP PIV H  A    L  Y   K
Sbjct: 422 RRWVPELAKLPDALIHEPWKASPDPGAAAARIYPEPIVGHPAARERALEAYRGLK 476


>gi|186473227|ref|YP_001860569.1| deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
 gi|184195559|gb|ACC73523.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
          Length = 504

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 175/500 (35%), Positives = 251/500 (50%), Gaps = 38/500 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR------------QHGISARQ 57
            LVW R DLR  DN ALY A  + + +V   F+      +               +   +
Sbjct: 14  GLVWFRRDLRTGDNAALYYALRHCE-RVWCAFVFDTTILQPLINWAHRRNAHAGKVQDAR 72

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             FI AS+ ++ +SL + G            D ++ +     Q  V  +F N  YE + +
Sbjct: 73  IEFILASVEELDRSLEEGGGALIVLHG----DPVDAIPKLAAQLPVDAVFTNHDYEPSAI 128

Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD+ +  RL+       +F D V+     +LN   + + V+TP++ A ++ L   DL+ 
Sbjct: 129 ERDETVADRLRADGRRLLTFKDQVIFERDELLNGQRKPFAVFTPYKNAWLKQLTPFDLKP 188

Query: 177 LPVPAIRLTGPVTP----SNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYY 229
            PV     +    P       P      F   +  +     G   A   L  F   ++  
Sbjct: 189 YPVERYSQSLARPPRTLDHAWPTLAKMGFAPGKLAETELQAGMSGAQARLEDFLT-RIDS 247

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y E+RD+PA +GTS LS +L  G +S R       E     L     GA +WL+ELIWR+
Sbjct: 248 YAERRDLPAARGTSHLSVHLRFGTVSIRTLARLAHEM---SLRPGGQGAATWLSELIWRD 304

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTI 346
           FY  ++A +P +   + F    + + W        L  AW  G TG+P++DAAM QLN  
Sbjct: 305 FYFMILAHHPHIAKRESFKREFDALRWETGKDADALFAAWCDGRTGYPLVDAAMLQLNRT 364

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+MHNRLRM+TASFLVKDL +DWR GE YF  +L D D ++NNGGWQWAASTG D+ P+F
Sbjct: 365 GFMHNRLRMVTASFLVKDLGIDWRRGERYFEEKLNDFDFSANNGGWQWAASTGCDAQPWF 424

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           RIFNP  Q ++FD QG FI+ +LPEL  VP ++IHAP      +       L  +YP P+
Sbjct: 425 RIFNPVTQSEKFDSQGLFIKRFLPELGKVPAKWIHAPWQADPDDLEDWGVVLGKDYPHPV 484

Query: 461 VDHKKACHHTLNQYYAAKKQ 480
           V+H KA   TL +Y   + +
Sbjct: 485 VEHAKARQQTLARYGVLRSR 504


>gi|254374529|ref|ZP_04990010.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
 gi|151572248|gb|EDN37902.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
 gi|332678425|gb|AEE87554.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1]
          Length = 464

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 158/483 (32%), Positives = 243/483 (50%), Gaps = 30/483 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  + + W R DLR+ DN ALY A    +   I +FI    Q     I +    +++ SL
Sbjct: 2   SKKIAIHWFRQDLRLADNPALYQASQADET--ITIFILDKNQ----DIGSASKLWLHHSL 55

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL  K     ++      + +E +     +  +T  ++NR Y+   + RD  +++
Sbjct: 56  NSLNSSLDNK---LNFYSG----NPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQ 108

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--I 182
            LQ H++   SF+ S+L+ P          YKVYTPF K LI+        + P  +   
Sbjct: 109 FLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLR 168

Query: 183 RLTGPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +L       ++      + +Q I   + IGE  +  IL +F   KV  Y   RD  +   
Sbjct: 169 KLNNSENLDSLKLLQPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDS 228

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSPYL  G +SP Q +N ++      L    +    ++ EL+WR+F  + + +YP +
Sbjct: 229 TSKLSPYLHFGEISPNQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL 283

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+MHNR+RMI ASFL
Sbjct: 284 -HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFL 342

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q ++F+  
Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
             +IR ++PEL  +P + I  P    +         L  NYP PIVD KK+    L  + 
Sbjct: 403 -EYIRKYVPELKLLPNKLIAKPWEASELVLKEAGITLGQNYPKPIVDLKKSRDRALQLHN 461

Query: 476 AAK 478
             K
Sbjct: 462 QIK 464


>gi|55377670|ref|YP_135520.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
           43049]
 gi|55230395|gb|AAV45814.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
           43049]
          Length = 465

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/474 (33%), Positives = 229/474 (48%), Gaps = 16/474 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R DLR TDN  L AA  +    V+ VFI              +  F+  +L  +
Sbjct: 1   MRLHWHRRDLRATDNAGLAAATPSD--PVVPVFIFDTAVLD--HAGPPRVAFMLDALDSL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++    KG      +     D    L     Q    K+ + + Y      RD  + + L 
Sbjct: 57  REWYRDKGSDLVVAEG----DPTSVLPELAAQHGAEKVTWGKDYSGLARERDAAVRQALD 112

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              + +    ++VL  PG I  +    Y V+T F +                P+      
Sbjct: 113 DADVAREAVQNAVLHEPGEITTNDGDPYSVFTYFGRKWHDR---EKAAPYDPPSADTLAD 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           V    +P   D  F+  +   P  G + A  +L  F  E VY Y E+RD PA + TS+LS
Sbjct: 170 VDGDALPTLADLGFEEPEADVPAAGTEEARALLDDFLDENVYEYEERRDFPADECTSRLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G +  R+ ++R +          +     + ++L WREFY  ++  +P V     
Sbjct: 230 AHLKFGTIGIREVYDRTQAAKEGTGGDRRDSVREFQSQLAWREFYTQVLFAHPHVVSSN- 288

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           +  +   IEW  D  LLQAWK G TG+PI+DA MRQL    +MHNR+RMI ASFL KDLL
Sbjct: 289 YKSYENPIEWENDEELLQAWKDGDTGYPIVDAGMRQLRDEAYMHNRVRMIVASFLTKDLL 348

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR G E+F  +L+D D A++NGGWQWAASTG D+ PYFRIFNP  QG+ +DP   +I+
Sbjct: 349 IDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYDPNAEYIK 408

Query: 427 HWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            ++PEL +   + IH  +  S   +   +  YP P+VDH +     L  +  A+
Sbjct: 409 EYVPELRDAAPEIIHDWNDCSLTQRRSAAPEYPDPVVDHSERREEALAMFERAR 462


>gi|146412189|ref|XP_001482066.1| hypothetical protein PGUG_05829 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 607

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 155/488 (31%), Positives = 249/488 (51%), Gaps = 23/488 (4%)

Query: 14  LRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
              D R +DN  L AA   +   +  ++ +++   +    HG+S  Q  +   SL  +++
Sbjct: 119 FLRDFRQSDNTGLNAASRMAAKENLPLVCLYVLCRDDLFAHGVSGFQLEYRLRSLELLRE 178

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL-EKRLQH 129
            L+QK I   +       + +  +     Q +++ LF N +YE++E+RR   L ++ L+ 
Sbjct: 179 ELAQKNIPLVFLNVDERKEVVPIVKEKAQQLKISHLFANIEYEVDELRRYTNLCKELLKA 238

Query: 130 RVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            +  +  +D+ L  PG+I+  +    + V+TP+ +A   +L +                 
Sbjct: 239 DISFQPHNDTTLAVPGTIVTKSKGTQFSVFTPWYRAWCAHLNKMKDPFQVRAKPEANSDE 298

Query: 189 TPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFC-KEKVYYYVEQ 233
                   FD                 +A +     GE  A   L+ F    ++  Y   
Sbjct: 299 FRQRNSHLFDLKIPQAPPGKQLTEKQKEAFEKYHKPGENAAWDDLQDFITSGRIKRYNVD 358

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ P++ G S++S + + G ++ R     L +   +  +     GA  W  ++ WR+FYR
Sbjct: 359 RNDPSVNGVSRMSVHFASGTINARTVIRSLLDHKLLRTIDSGNDGAREWARQVAWRDFYR 418

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM KPFI   ++++W  +S   + W QG TG+PI+DAAMRQL  +G++HNR
Sbjct: 419 HVLCNWPHICMFKPFISNMDEVKWEYNSDHFERWCQGKTGYPIVDAAMRQLLEMGYLHNR 478

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RM+ ASFL K L++DWR GE YF+  L DGD  SNNGGW +++S G D  PYFRIFNP 
Sbjct: 479 VRMVVASFLSKHLMIDWREGERYFLENLADGDFPSNNGGWGFSSSVGVDPQPYFRIFNPW 538

Query: 413 IQGKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470
            Q ++FD +G +IR WLPEL  +   + IH P+    +     N YP PIVDHK A    
Sbjct: 539 TQAEKFDKKGDYIRKWLPELREIQDVKGIHNPYENGYRQIAEKNGYPPPIVDHKTARERA 598

Query: 471 LNQYYAAK 478
           L +Y  AK
Sbjct: 599 LERYKEAK 606


>gi|239817579|ref|YP_002946489.1| deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110]
 gi|239804156|gb|ACS21223.1| Deoxyribodipyrimidine photo-lyase [Variovorax paradoxus S110]
          Length = 515

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 172/489 (35%), Positives = 252/489 (51%), Gaps = 30/489 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ DN ALY A      +V+ VF+             R+  FI  SL++++
Sbjct: 15  GLMWFRRDLRVDDNAALYHALRAC-RQVVCVFVFDRAILDPLPRIDRRVEFIRESLVELE 73

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L                 +IE + +      V  +F NR  E + + RD  +   L +
Sbjct: 74  EELRALSGGLIVRHA----HAIEEIPALAHSLDVQAVFANRDDEPDALARDAQVLGALAN 129

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   ++ DS +     +LN   Q Y V+TP+++A +  +    L+  PV +       
Sbjct: 130 AGVSFYTYKDSTVFERDELLNKTGQPYTVFTPYKRAWLAKVDAFFLKPYPVRSHADALAP 189

Query: 189 TPSNIPR----FFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            P+          D  F   +      P G Q A  +   F + ++  Y   R+ PA++G
Sbjct: 190 PPAAHRTPAPSLEDLGFGRSNLSELGIPTGSQGAAALFEDFFQ-RIDRYDAARNFPAVRG 248

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S L  +L  G +S RQ      +    L ++  +GA +WL ELIWREFY  ++  +P V
Sbjct: 249 PSYLGVHLRFGTVSIRQLAGVAHQ----LFLQGDAGAAAWLGELIWREFYFQILVHFPHV 304

Query: 302 CMG---KPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             G   K F P  +KI+W+       L +AW QG TG+P++DAAM Q+N  G+MHNRLRM
Sbjct: 305 HSGGESKSFRPEYDKIQWHHGKHADQLFEAWCQGRTGYPLVDAAMLQINQSGYMHNRLRM 364

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL KDL +DWR GE YF   L D +LASNNG WQWA+S+G D+ P+FRIFNP  Q 
Sbjct: 365 VVASFLCKDLGLDWRRGERYFALHLNDFELASNNGNWQWASSSGCDAQPWFRIFNPVTQS 424

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKACHH 469
           +RFDP+G FIR +LP+L  +    IHAP +     L+   + L   YP P+VDH +A   
Sbjct: 425 ERFDPEGKFIRRYLPQLAGLSNAAIHAPWTASPVELEAAGIKLGETYPRPVVDHAEAREQ 484

Query: 470 TLNQYYAAK 478
           T+ +Y A +
Sbjct: 485 TMRRYAAVR 493


>gi|119509710|ref|ZP_01628855.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
 gi|119465576|gb|EAW46468.1| deoxyribopyrimidine photolyase [Nodularia spumigena CCY9414]
          Length = 482

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 162/478 (33%), Positives = 233/478 (48%), Gaps = 18/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S AKV+ VF   P+   +  ++  +  ++   L  +Q+
Sbjct: 6   LFWHRRDLRISDNTGLVAARERS-AKVVGVFCLDPQILSRDDVAPARVTYMMGCLQALQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             +Q G            + +E + +         +F+N   E     RD+ +   L+  
Sbjct: 65  RYAQVGSQLLILHG----NPVEVIPALAKALNAKAVFWNWDVEPYSQTRDRTIIDILKSN 120

Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA------I 182
            I       D +L  P  I       Y VY+PF K          + +L   A       
Sbjct: 121 SIEFLHENWDQILHAPDEIRTGTKSPYTVYSPFWKNWSSKPKAKSVETLQNAAGLTEAEQ 180

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +        +P   D  F     +    GE  A   L++F    +  Y EQR++P + G
Sbjct: 181 EIAKQAGVIPLPTARDLGFIWDGELSISPGEAAAQERLQEFTDSAITEYQEQRNLPGVDG 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           TS+LS  L  GV+  RQ W    E        +  +   +W  EL WREFY+H M  +P 
Sbjct: 241 TSRLSAALKFGVIGIRQVWEATLEAQEFSRSEETAASIRTWQQELAWREFYQHAMYNFPE 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G  +    +   W  +    QAW +G TG+PI+DAAMRQLN +GWMHNR RMI ASF
Sbjct: 301 LAEG-AYRDTFKNFPWQNNDEYFQAWCEGRTGYPIVDAAMRQLNEMGWMHNRCRMIVASF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL+++ ++GE+YFM +L+DGDL++NNGGWQW+ S+G D  P  RIFNP  Q ++FD 
Sbjct: 360 LTKDLMINPQLGEKYFMQKLIDGDLSANNGGWQWSTSSGMDPKP-LRIFNPASQAQKFDG 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +G +IR W+ EL +V T+Y+        +   S+ YP PIVDHK         Y   K
Sbjct: 419 EGEYIRQWVSELRSVDTEYLVTGKIPPLELQ-SIGYPAPIVDHKVQQGLFKKMYQQQK 475


>gi|37725011|gb|AAO23972.1| cryptochrome 2B [Pisum sativum]
          Length = 597

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 137/481 (28%), Positives = 228/481 (47%), Gaps = 23/481 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            M+  +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL
Sbjct: 2   GMNRTIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + + +SL   G      +    D +++ L       + TK+ +N  Y+   + RD  +++
Sbjct: 60  VHLDQSLKSLGAGLVIIKT---DSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKE 116

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +L +  V  +S++  +L  P  I + +   +  + PF    +   ++      P   I  
Sbjct: 117 KLVEQGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILA 176

Query: 185 TGPVTPSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            G V   +I +             ++   +  G   +   L +F +  + +Y   R    
Sbjct: 177 QGKVEKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLG 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294
              TS LSPY+  G LS R+ +   + +      +  I  +  A  +L  + +RE+ R+L
Sbjct: 237 GDSTSLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYL 296

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P   + +P +   +   WN D    +AW+QG TG+P++DA MR+L   GW+HN++R
Sbjct: 297 CFSFP-FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ +P + 
Sbjct: 356 VIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVL 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH 468
           G+++DP G +IR WLPEL  +P ++IH P             +L  NYP PI+D   A  
Sbjct: 416 GRKYDPAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIIDIDLARE 475

Query: 469 H 469
            
Sbjct: 476 Q 476


>gi|29467481|dbj|BAC67179.1| cryptochrome 2 [Armoracia rusticana]
          Length = 617

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 138/500 (27%), Positives = 226/500 (45%), Gaps = 29/500 (5%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M+ +   +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  
Sbjct: 1   MTTNKKTIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +  N   ++  +         TK+ ++  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSELTLIKTHN---TVSAILDCIRVTGATKVVFDHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L    I  +SF+  +L  P  I     + + +++ + K  +   +++ +   P    
Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYCEKGKHFTIFSSYWKKCLDMSIESVMLPPPWRLR 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +T            +   +          +   +  G  NA  IL +F  +++ YY + 
Sbjct: 176 PITAAADAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R+ +   + +      D   + +     +L  +  RE
Sbjct: 236 SKKVVGNSTSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKGIGLRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 296 YSRYICFNFP-FTHEQSLLSHLRFFPWDTDVDKFKAWRQGRTGYPLVDAGMRELWATGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 355 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLD 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           NP IQG  FDP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 415 NPAIQGANFDPEGEYIRQWLPELVRLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 474

Query: 464 KKACHHTLNQYYAAKKQSLL 483
             A           ++  ++
Sbjct: 475 DTARELLTKAISRTREAQIM 494


>gi|328675930|gb|AEB28605.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
          Length = 464

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/483 (32%), Positives = 245/483 (50%), Gaps = 30/483 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  V + W R DLR+ DN ALY A    +   I +FI    Q     I      +++ SL
Sbjct: 2   SKKVAIHWFRQDLRLADNPALYHASQADET--ITIFILDENQ----DIGGASKLWLHHSL 55

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + +SL+ K     ++      + +E +     + +VT  ++NR Y+   + RD  +++
Sbjct: 56  NNLNRSLNDK---LNFYNG----NPLEIIKKLIKENKVTDFYWNRCYDKYSINRDTQIKQ 108

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPAI 182
            LQ + +   SF+ S+L+ P          YKVYTPF K LI+         +++    I
Sbjct: 109 FLQEQSINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYQPNIKKAVFSRLI 168

Query: 183 RLTGPVTPSNIPRFF-DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +L    T  ++        +Q I   + +GE+ A  +L +F   K+  Y   RD  +   
Sbjct: 169 KLASSDTLDSLKLLEPKLTWQNIIKQWQVGEKAAAQLLEQFLTTKIKDYKIARDYMSTDA 228

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSPYL  G +SP Q +N ++      L    +    ++ EL+WR+F  + + +YP +
Sbjct: 229 TSTLSPYLHFGEISPNQIFNAVQ-----SLDSIGNNEEHFIKELVWRDFSYYQIYYYPEL 283

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K      +   W+ ++ LL+ W++G TG PI+DA MRQL   G+MHNR+RMI ASFL
Sbjct: 284 -HNKNINQKFDNFAWDNNATLLKKWQKGQTGIPIVDAGMRQLWQTGYMHNRVRMIVASFL 342

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q ++F+  
Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402

Query: 422 GTFIRHWLPELNNVPTQYIHAPHS----WLDKNDL--SLNYPLPIVDHKKACHHTLNQYY 475
             +IR ++PEL  +P + I  P       L +  +    NYP PIVD K +    L  + 
Sbjct: 403 -EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGIILGQNYPRPIVDLKNSRDKALQLHN 461

Query: 476 AAK 478
             K
Sbjct: 462 QIK 464


>gi|261876461|dbj|BAI47556.1| cryptochrome2 [Glycine max]
          Length = 634

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 137/477 (28%), Positives = 226/477 (47%), Gaps = 23/477 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA       V+ V++  P++  Q         ++  SL  + 
Sbjct: 6   TIVWFRRDLRIEDNPALAAAAKEG--SVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           +SL   G      +  +   +   L       + TK+ +N  Y+   + RD  ++++L +
Sbjct: 64  QSLKSLGSRLVLIKTHSTAVA---LVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +S++  +L  P  + + + + +  +  F K  +   +       P   I   G +
Sbjct: 121 QGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKI 180

Query: 189 TPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              ++         + P  A+    +  G +NA   LR+F +  + +Y ++R     + T
Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGEST 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSPYL  G LS R+ +     +      +     +  A  +L  +  RE+ R+L   +
Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +  +   +   WN D  + + W+QG TGFP++DA MR+L   GW+HNR+R+I +
Sbjct: 301 P-FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVS 359

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ +    D     R+ NP IQG +F
Sbjct: 360 SFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKF 419

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
           DP+G ++R WLPEL  +PT++IH P             +L  NYP PI+D   A   
Sbjct: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARER 476


>gi|89199718|gb|ABD63262.1| cryptochrome 2 [Glycine max]
          Length = 634

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 137/477 (28%), Positives = 226/477 (47%), Gaps = 23/477 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA       V+ V++  P++  Q         ++  SL  + 
Sbjct: 6   TIVWFRRDLRIEDNPALTAAAKEG--SVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           +SL   G      +  +   +   L       + TK+ +N  Y+   + RD  ++++L +
Sbjct: 64  QSLKSLGSRLVLIKTHSTAVA---LVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +S++  +L  P  + + + + +  +  F K  +   +       P   I   G +
Sbjct: 121 QGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDIVSVVPPWQLIPAEGKI 180

Query: 189 TPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              ++         + P  A+    +  G +NA   LR+F +  + +Y ++R     + T
Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGEST 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSPYL  G LS R+ +     +      +     +  A  +L  +  RE+ R+L   +
Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +  +   +   WN D  + + W+QG TGFP++DA MR+L   GW+HNR+R+I +
Sbjct: 301 P-FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVS 359

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ +    D     R+ NP IQG +F
Sbjct: 360 SFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKF 419

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
           DP+G ++R WLPEL  +PT++IH P             +L  NYP PI+D   A   
Sbjct: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARER 476


>gi|297180123|gb|ADI16346.1| deoxyribodipyrimidine photolyase [uncultured bacterium HF130_01F24]
          Length = 478

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 161/494 (32%), Positives = 248/494 (50%), Gaps = 29/494 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M + T     +VW R DLR+ DN AL  A   S  +V+ ++I   +      +      +
Sbjct: 1   MASDTK---SIVWFRQDLRLQDNPALEFAA--SVGEVLPIYIVDEKNAADWRLGRASQWW 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  + +S++          C    D +  ++    +  ++ +F+NR YE  +V RD
Sbjct: 56  LNESLRSLNESMNGAL-------CLYRGDPLGIIEKLITEHSISNIFWNRCYEPWQVLRD 108

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           K ++  ++      +SF+  +L  P  I       YKV+TPF K         +     V
Sbjct: 109 KTIKSEVRKFGAKARSFNGFLLNEPWEIAKSDGTPYKVFTPFYKQSRLKGTPREASIDYV 168

Query: 180 PAIRLTG------PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
             IR          +   N+    D+  + +   +  GE+    +L+ F +  +  Y   
Sbjct: 169 SKIRFVSNSKKNREIDSLNLLNENDWSTE-MASRWTPGERGGEQVLKLFLERGLCNYKIG 227

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P  +  S+LSPYL  G LSP   W+++      +L   ++ A  +  EL+WREF   
Sbjct: 228 RDFPDKEAVSRLSPYLHFGELSPNYVWHKV--NNFAVLENIETQAEHFHRELVWREFSYS 285

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L+ ++P +   +      +   W K+   ++ W+ G TG+P+IDA MR+L + G+MHNR+
Sbjct: 286 LIHYFPDLTY-RNLNRRFDDFPWKKNDQFMKKWRTGMTGYPLIDAGMRELASTGYMHNRV 344

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFLVK+LL+DWR G E+F   L+D DLA+N+  WQW A +G D+ PYFRIFNP  
Sbjct: 345 RMITASFLVKNLLIDWRNGAEWFWDSLIDADLANNSCSWQWVAGSGADAAPYFRIFNPVT 404

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKAC 467
           Q K+FDP   +IR W+ EL   P +YIH    AP S L    + L+  YP  IVD K + 
Sbjct: 405 QSKKFDPDAKYIRRWITELEKCPNKYIHDPSSAPESELQHFGIKLDQTYPSAIVDLKTSR 464

Query: 468 HHTLNQYYAAKKQS 481
              L  Y + K +S
Sbjct: 465 EAALRAYQSLKGRS 478


>gi|242092996|ref|XP_002436988.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
 gi|241915211|gb|EER88355.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
          Length = 654

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 136/492 (27%), Positives = 223/492 (45%), Gaps = 30/492 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA       V+ +FI  P  + Q+        ++  SL  + 
Sbjct: 7   TVVWFRRDLRIHDNPALAAAAKEG--SVLPLFIWCPADYEQYYPGRCSRWWLKQSLAHLG 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           KSL   G      +    D ++  L         T++ YNR Y+   +  D  ++  L  
Sbjct: 65  KSLELLGCPLVLIRAE--DSTLATLLECVHCISATRVVYNRLYDPISLVLDDKIKNELSA 122

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           H +  +SF+  +L  P  + +   Q +  +  + +  +   ++      P   +   G +
Sbjct: 123 HGISVQSFNGDLLYEPWDVYDENGQAFTSFNKYWEKCMNVPIEISQYLAPTRLVAAPG-L 181

Query: 189 TPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                    D   ++          +   +  G +NA ++L +F    +  Y +      
Sbjct: 182 ANVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFLSCGLLEYSKHGMKVG 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSPYL  G LS R+ +  +    V    + KS A      +L  + +RE+ R+L
Sbjct: 242 GTTTSLLSPYLHFGELSVRKVYQLVTMHHVKWQNEGKSEAEESVRLFLRSIGFREYSRYL 301

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     + F+   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R
Sbjct: 302 CFNFP-FTHERSFLGNLKHYPWLLDEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 360

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK L + W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +Q
Sbjct: 361 VIVSSFAVKCLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 420

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
           G+++DP G ++R W+PEL  +PT++IH P S           +L  NYP PIV+   A  
Sbjct: 421 GQKYDPDGEYVRTWIPELARMPTEWIHCPWSAPNSILQVAGVELGFNYPKPIVELHMARE 480

Query: 469 ---HTLNQYYAA 477
                ++  +  
Sbjct: 481 CLDDAISTMWQL 492


>gi|190349137|gb|EDK41731.2| hypothetical protein PGUG_05829 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 607

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 155/488 (31%), Positives = 250/488 (51%), Gaps = 23/488 (4%)

Query: 14  LRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
              D R +DN  L AA   +   +  ++ +++   +    HG+S  Q  +   SL  +++
Sbjct: 119 FLRDFRQSDNTGLNAASRMAAKENLPLVCLYVLCRDDLFAHGVSGFQLEYRLRSLELLRE 178

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL-EKRLQH 129
            L+QK I   +       + +  +     Q +++ LF N +YE++E+RR   L ++ L+ 
Sbjct: 179 ELAQKNIPLVFLNVDERKEVVPIVKEKAQQLKISHLFANIEYEVDELRRYTNLCKELLKA 238

Query: 130 RVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            +  +  +D+ L  PG+I+  +    + V+TP+ +A   +L +                 
Sbjct: 239 DISFQPHNDTTLAVPGTIVTKSKGTQFSVFTPWYRAWCAHLNKMKDPFQVRAKPEANSDE 298

Query: 189 TPSNIPRFFDYPF--------------QAIDPMFPIGEQNALHILRKFC-KEKVYYYVEQ 233
                   FD                 +A +     GE  A   L+ F    ++  Y   
Sbjct: 299 FRQRNSHLFDSKIPQAPPGKQLTEKQKEAFEKYHKPGENAAWDDLQDFITSGRIKRYNVD 358

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ P++ G S++S + + G ++ R     L +   +  +     GA  W  ++ WR+FYR
Sbjct: 359 RNDPSVNGVSRMSVHFASGTINARTVIRSLLDHKLLRTIDSGNDGAREWARQVAWRDFYR 418

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM KPFI   ++++W  +S   + W QG TG+PI+DAAMRQL+ +G++HNR
Sbjct: 419 HVLCNWPHICMFKPFISNMDEVKWEYNSDHFERWCQGKTGYPIVDAAMRQLSEMGYLHNR 478

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RM+ ASFL K L++DWR GE YF+  L DGD  SNNGGW +++S G D  PYFRIFNP 
Sbjct: 479 VRMVVASFLSKHLMIDWREGERYFLENLADGDFPSNNGGWGFSSSVGVDPQPYFRIFNPW 538

Query: 413 IQGKRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470
            Q ++FD +G +IR WLPEL  +   + IH P+    +     N YP PIVDHK A    
Sbjct: 539 TQAEKFDKKGDYIRKWLPELREIQDVKGIHNPYENGYRQIAEKNGYPPPIVDHKTARERA 598

Query: 471 LNQYYAAK 478
           L +Y  AK
Sbjct: 599 LERYKEAK 606


>gi|289670152|ref|ZP_06491227.1| photolyase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 484

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/485 (32%), Positives = 227/485 (46%), Gaps = 17/485 (3%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +    MS  +VW R DLR+ DN AL AA        I ++I  P +  +         + 
Sbjct: 8   RCRVRMSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGVASRTWR 66

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  +L  +G            DS + LD    Q     +++NR+YE     RD 
Sbjct: 67  HRSLAALDDALRARGSGLVIR----AGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDA 122

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +++ L+ R I  +S + ++L  P  +       YK++TPF +  +  L        P  
Sbjct: 123 QIKRALRERGIEAQSCNSALLFEPWQLSTQQGGPYKMFTPFWRNALTQLHLPAAVPAPRS 182

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCKEKVYYYVEQRDI 236
              L   +    +      P    D  F      GE  A  +L  F    +  Y E RD 
Sbjct: 183 LPPLPAALKTDALDTLQLVPSLNWDQGFWEHGQPGEAGAHEMLEIFIDGALSGYRENRDR 242

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P   GTSQLSP+L  G ++P +  + L+        +  +    ++ +L WR+F  HL+ 
Sbjct: 243 PDRVGTSQLSPHLHFGEIAPWRIASTLEAR---RTARNGAEIDGYIRQLGWRDFAYHLLH 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            +P     +   P  E  +W K D   LQAW++G TG PI+DA MRQL   GWMHNR+RM
Sbjct: 300 HFPD-TTNQNLNPRFEGFDWTKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRM 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q 
Sbjct: 359 IVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQA 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYP-LPIVDHKKACHHTLNQ 473
           ++FDPQ T+I  W+PEL  +  +   AP    L     +  YP  PI+   +     L  
Sbjct: 419 EKFDPQATYITRWVPELGKLAVKERFAPWLHPLSLARFASEYPRAPIIGLAEGRDAALAA 478

Query: 474 YYAAK 478
           Y  ++
Sbjct: 479 YAKSR 483


>gi|313634631|gb|EFS01103.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL N1-067]
          Length = 471

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/479 (34%), Positives = 246/479 (51%), Gaps = 25/479 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC + D  ++ +F   PEQ+      +      ++S+   
Sbjct: 2   TSVMWFRRDLRLNDNKALYQACRDKDDLIL-LFQVNPEQFIN---GSPSHQAFFSSVAYF 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRRD-KLLEKR 126
           ++ L +       H    F + +  L+    +     K+++NR       +RD   L+  
Sbjct: 58  KQKLDK-----TAHLQIMFGEPMGLLEKLKEKIPAWDKVYFNRDETGYGAKRDEAALQFF 112

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +  +   ++ D+ L     +   A   YKV+TP+ K   + + +  L            
Sbjct: 113 AKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYYKKWREEIKERPLPISLNSEKVNKT 172

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P +  +F +   +        +GEQ A + L  F KE +  Y E RD P +  TS L
Sbjct: 173 ILFPEDEKQFVEMTRELPPLDATKLGEQAAQNHLNYFVKENMADYNEARDFPDLDKTSHL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G +S R  W  ++E       +  +G  ++  EL WR+FY  +   +P+    +
Sbjct: 233 SRFLRTGEVSIRTVWQAVQEA------EHTNGRATFEKELCWRDFYNMIYVSFPNQ-KNE 285

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                   IEW  +    Q W+QG TGFP++DAAMRQL   GWMHNRLRMITASFL KDL
Sbjct: 286 AIQANYRFIEWENNRTNFQKWQQGVTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FI
Sbjct: 346 LIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFI 405

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++ EL  +P ++IH P     +        +  +YP PIVDHK+     + +Y  +K
Sbjct: 406 RKYVQELAGLPDKFIHQPEKMTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYEFSK 464


>gi|192291959|ref|YP_001992564.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
           TIE-1]
 gi|192285708|gb|ACF02089.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
           TIE-1]
          Length = 483

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/495 (30%), Positives = 230/495 (46%), Gaps = 27/495 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M    +    +VW R+DLR+ D+ AL+AA   S A V+ V++          +      +
Sbjct: 1   MLTPASSRPIIVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDDVRALGGAVRWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRR 119
           +  SL  ++  L   G      +      +   L     Q     + +N  +   +    
Sbjct: 60  LAQSLRALESDLRALGGALILRRGP----AAAVLAELAQQHDAAAVHWNEIEIAAHRAVA 115

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D L +      +         L+ P +I +   +  +V+TPF + ++   +    + LP 
Sbjct: 116 DALADALTVAGIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLS--LGDPPQPLPR 173

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYV 231
           P      P  PS+  +  D+  +   P +  G        E  A   L  F       Y 
Sbjct: 174 PTTLRPAPAPPSD--QLGDWQLEPTAPDWAGGLRQTWTPGEAAAQARLSDFLAGLP-GYA 230

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           + RD P    TS LSP+L  G +SPRQ W   +    +           +L+EL WREF 
Sbjct: 231 DGRDYPDRHITSGLSPHLRFGEISPRQVWYAARFAAAERPAIA-PDIDKFLSELGWREFC 289

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RHL+  +P +   +   P  +   W  D  +L AW++G TG+PI+DA MR+L   G MHN
Sbjct: 290 RHLLFDHPDLAT-RNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHN 348

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM+  SFLVK LL+DWR+GE++F   L+D D  SN G WQW A  G D+ PYFR+FNP
Sbjct: 349 RVRMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNP 408

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKK 465
            +Q ++FD  G +I+ W+PEL  +P   IH P +           +L  NYP PIVDHK 
Sbjct: 409 VLQSEKFDAGGAYIQRWVPELAGLPNDLIHQPWTATPLELAAAGIELGGNYPGPIVDHKT 468

Query: 466 ACHHTLNQYYAAKKQ 480
                L+ Y   +++
Sbjct: 469 GRQRALSAYAELRQR 483


>gi|58581149|ref|YP_200165.1| photolyase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623072|ref|YP_450444.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|58425743|gb|AAW74780.1| photolyase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367012|dbj|BAE68170.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 484

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/485 (32%), Positives = 229/485 (47%), Gaps = 17/485 (3%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +    MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + 
Sbjct: 8   RCRVRMSYAIVWFRRDLRLQDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWR 66

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  ++ +L   G            DS + LD+   Q     +++NR+YE     RD 
Sbjct: 67  HRSLAALEDALRALGSGLVIR----AGDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDA 122

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +++ L+ R I  +S + ++L  P  +       YKV+TPF +  +  L        P  
Sbjct: 123 QIKRALRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRS 182

Query: 181 AIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              L   +    +      P     Q     +  GE  A  +L  F    +  Y + RD 
Sbjct: 183 LPPLPAMLKTDALDTLQLVPSLNWDQGFWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDR 242

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P   GTSQLSP+L  G ++P +  + L+        +  +    ++ +L WR+F  HL+ 
Sbjct: 243 PDRVGTSQLSPHLHFGEIAPWRIASALE---AQRTARNGAEIDGYIRQLGWRDFAYHLLH 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            +P     +   P  E  +W K D   LQAW++G TG PI+DA MRQL   GWMHNR+RM
Sbjct: 300 HFPD-TTNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRM 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q 
Sbjct: 359 IVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQA 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQ 473
           ++FDP  T+I  W+PEL  +P +   AP    L     +  YP  PI+   +     L  
Sbjct: 419 EKFDPHATYITRWVPELGKLPVKERFAPWLHPLSLARFAPEYPRTPIIGLAEGRDAALAA 478

Query: 474 YYAAK 478
           Y  ++
Sbjct: 479 YSKSR 483


>gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
 gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
          Length = 480

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 162/480 (33%), Positives = 234/480 (48%), Gaps = 19/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS+ L W R DLR+ DN  L AA +    KV+ +F   P       I+A +  ++   L 
Sbjct: 1   MSLRLFWHRRDLRLNDNLGL-AAAYTRTPKVVGLFCFDPAILSASDIAAVRVAYLVGCLQ 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q++  + G  F   +        + L           + ++   E     RD+ +   
Sbjct: 60  ALQEAYRRLGGSFLIFRGDPR----QILPQVAKGLGAVAVHWHEDVEPYGRERDRAVAAA 115

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL------IQNLVQADLRSLPV 179
           L+ + I  ++  D +L PP +I     Q Y VY+PF +                L  L  
Sbjct: 116 LKEKGIAVETAWDQLLHPPEAIQTKQGQPYTVYSPFWRNWSSLAKPEPVSAPRHLEPLTE 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                 G +    +P   D  F    D +   GE  A   L  F  + +  Y EQR+ PA
Sbjct: 176 IEQATAGTLGAICLPTAKDLGFHWSGDLILAPGEAAAQAQLETFIDQHIQDYGEQRNYPA 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAF 297
             GTS LSP L  GV+  R+ W   +        +  +    +W  EL WREFY+H + +
Sbjct: 236 QPGTSLLSPALKFGVIGIRRVWTATQAAMAAARSEEAQRSIRTWQQELAWREFYQHALYW 295

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +   +P         W  +     AW +G TG+PI+DAAMRQLN  GWMHNR RMI 
Sbjct: 296 FPHLAE-RPHREGFATFPWLNNEAHFAAWCEGRTGYPIVDAAMRQLNETGWMHNRCRMIV 354

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDL+++ + GE YFM +L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++
Sbjct: 355 ASFLTKDLIINPQWGERYFMQKLIDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAQK 413

Query: 418 FDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           FDP+  +IR WLPE+ ++ T   +    S L+++     YPLPIVDH++        Y  
Sbjct: 414 FDPEAEYIRRWLPEVRSLDTIDLVTGNISPLERHRCG--YPLPIVDHRQQQQRFKQLYQE 471


>gi|257877829|ref|ZP_05657482.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC20]
 gi|257811995|gb|EEV40815.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC20]
          Length = 473

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/484 (34%), Positives = 252/484 (52%), Gaps = 26/484 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M++H++W R DLR+ DN AL  A      +  ++ VF    +Q+     S     + +++
Sbjct: 1   MAIHVMWFRKDLRLEDNTALTEALVSLQENDHLLCVFHLNDKQFLPEAPSH---DYFFSA 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +    K+  ++ +           ++ + L +   +   ++L++N        +RD  ++
Sbjct: 58  VAHFIKAAKKQNLTIHLLTG-TLTEAFDQLFACYPEW--SQLYFNFDNRGFGRKRDLYIK 114

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--PVPA 181
           + ++ + I   SF+D  L  P  +       YK +TP+ K  IQ       +       +
Sbjct: 115 ELVEKKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKQALDFEKS 174

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           +                   +     F   +GE  A   L+ F ++++  Y + RDIP+I
Sbjct: 175 VHFDDAPHFKAGTALLAKLLENRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDIPSI 234

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GTS+LSP+LS G +S R+ W   +       +   +G  ++L EL WR+FY  +   +P
Sbjct: 235 KGTSRLSPFLSFGQISIRKVWAACQ------GMPSSTGKATFLKELAWRDFYHMIYFSHP 288

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                   I     ++W K+   L  W+ G TG+PIIDAAMRQLN  GWMHNRLRMI AS
Sbjct: 289 EQ-KNYELIEKYRNMDWRKNEEELTKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVAS 347

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDLL+DWR GE YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGK+FD
Sbjct: 348 FLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKFD 407

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473
             GTFI+ ++PEL  +P ++IH P+   D+        L  +YPLPIVDH +A    L+ 
Sbjct: 408 KDGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDHNEARKRALDL 467

Query: 474 YYAA 477
           Y   
Sbjct: 468 YSKI 471


>gi|166712667|ref|ZP_02243874.1| photolyase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 484

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/485 (32%), Positives = 227/485 (46%), Gaps = 17/485 (3%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +    MS  +VW R DLR+ DN AL AA        I ++I  P +  +         + 
Sbjct: 8   RCRVRMSYAIVWFRRDLRLQDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGGASRTWR 66

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  ++ +L   G            DS + LD    Q     +++NR+YE     RD 
Sbjct: 67  HRSLAALEDALRALGSGLVIR----AGDSAQVLDDVIAQTGAVAVYWNRKYEPATQPRDA 122

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +++ L+ R I  +S + ++L  P  +       YKV+TPF +  +  L        P  
Sbjct: 123 QIKRALRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPGS 182

Query: 181 AIRLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              L   +    +      P     Q     +  GE  A  +L  F    +  Y E RD 
Sbjct: 183 LPPLPAMLKTDALDTLQLVPSLNWDQGFWEHWHAGEAGAHEMLEIFIDGGLSGYRENRDR 242

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P   GTSQLSP+L  G ++P +  + L+        +  +    ++ +L WR+F  HL+ 
Sbjct: 243 PDRVGTSQLSPHLHFGEIAPWRIASALE---AQRTARNGAEIDGYIRQLGWRDFAYHLLH 299

Query: 297 FYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            +P     +   P  E  +W K D   LQAW++G TG PI+DA MRQL   GWMHNR+RM
Sbjct: 300 HFPD-TTNQNLNPRFEGFDWAKVDPVALQAWQRGRTGVPIVDAGMRQLWHTGWMHNRVRM 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q 
Sbjct: 359 IVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQA 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQ 473
           ++FDP  T+I  W+PEL  +P +   AP    L     +  YP  PI+   +     L  
Sbjct: 419 EKFDPHATYITRWVPELGKLPVKERFAPWLHPLSLARFAPEYPRTPIIGLAEGRDAALAA 478

Query: 474 YYAAK 478
           Y  ++
Sbjct: 479 YSKSR 483


>gi|48951|emb|CAA43069.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
          Length = 450

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 242/475 (50%), Positives = 319/475 (67%), Gaps = 25/475 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN A  AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLA-AAACRDASARVLALYISTP-QWQAHDMAPRQAAFISAQL- 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ + F+ SIE + + C Q  V+  FYN QYE NE +RD+ +EK 
Sbjct: 58  ALQTALAEKGIPLLFHEVA-FNASIETVKNVCRQHDVSH-FYNYQYEFNERQRDRAVEKL 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               VIC+ FDDSV+L PG+ +    +MYKV+TPF+ A +  L +     +P P IR++G
Sbjct: 116 --PSVICEGFDDSVILAPGA-MTGNHEMYKVFTPFKNAWL-RLKEDIPPCVPAPKIRVSG 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             TP       +YP Q  D +FP+ E   +  LR+FC +    Y  +RD PA+ GTS+L 
Sbjct: 172 LSTPLTPVSL-NYPQQEFDALFPVEENAVIAQLRQFCAQA-DEYALRRDFPAVDGTSRL- 228

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L+ G LSPRQC +RL  +   L   P S    WLNELIW EFYRHLM +YP++C  +P
Sbjct: 229 ASLATGGLSPRQCLHRLLAQPQALDGGPGS---VWLNELIW-EFYRHLMTWYPALCKHQP 284

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F  WT+++ W ++ H  QAW QG TG+PI+DAAMRQLN  G MHNRLRMITASFLVKDLL
Sbjct: 285 FR-WTKRVAWQENPHYFQAW-QGETGYPIVDAAMRQLNATG-MHNRLRMITASFLVKDLL 341

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + WR+GE YFMSQL+DGDLA+N GGWQWAASTG D+ PYFR FNPT QG+RFD  G FIR
Sbjct: 342 I-WRLGERYFMSQLIDGDLAAN-GGWQWAASTGTDAAPYFR-FNPTTQGERFDRDGEFIR 398

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
             LP L ++P + IH P  W  K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 399 Q-LPALRDIPGKAIHEPWRW-AKAGVVLDYPRPIVEHKQAR-ATLSAYEAARKGA 450


>gi|316933592|ref|YP_004108574.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
           DX-1]
 gi|315601306|gb|ADU43841.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
           DX-1]
          Length = 483

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 158/495 (31%), Positives = 232/495 (46%), Gaps = 27/495 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  T      +VW R+DLR+ D+ AL+AA   S A V+ V++          +      +
Sbjct: 1   MLTTAGSRPVIVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDEVRALGGAARWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRR 119
           +  SL  ++  L   G +    +      +   L     Q     + +N  +   +    
Sbjct: 60  LAQSLRSLEAELRAAGALLILRRGP----AAAVLAELAQQSDAAAVHWNEIEIAPHRAVA 115

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D L +      +         L+ P +I +   +  +V+TPF + ++   +    + LP 
Sbjct: 116 DALADALTMAGIAYHRHSGDTLVAPSAIRSKDGRGMRVFTPFWRRVLS--LGDPPQPLPR 173

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYV 231
           PA     P  P    +  D+  +   P +  G        E  A   L  F   ++  Y 
Sbjct: 174 PAALRPAPALPGA--QLSDWQLEPTAPDWAGGLRATWRPGEAAAKTRLADFLA-RLPGYA 230

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E RD P    TS LSPYL  G +SPRQ W   +    +           +L+EL WREF 
Sbjct: 231 EGRDYPDRHVTSGLSPYLRFGEISPRQVWYAARFAAAERPAIA-PDIDKFLSELGWREFC 289

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RHL+A +P +   +   P  +   W  D   L AW++G TG+PI+DA M +L   G MHN
Sbjct: 290 RHLLADHPDLA-ARNLQPAFDAFPWQSDDGALTAWQRGRTGYPIVDAGMHELWHSGVMHN 348

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM+  SFLVK LL+DWR+GE++F   L+D D  SN G WQW A  G D+ PYFR+FNP
Sbjct: 349 RVRMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNP 408

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKK 465
            +Q ++FD  G +IR WLPEL  +P   IH P +           +L  NYP PIVDHK 
Sbjct: 409 VLQSEKFDADGAYIRRWLPELAGLPNNLIHQPWTATPLELAAAGVELGGNYPRPIVDHKA 468

Query: 466 ACHHTLNQYYAAKKQ 480
           A    L+ Y   +++
Sbjct: 469 ARQRALSAYSELRQR 483


>gi|254373077|ref|ZP_04988566.1| hypothetical protein FTCG_00652 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570804|gb|EDN36458.1| hypothetical protein FTCG_00652 [Francisella novicida GA99-3549]
          Length = 464

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 160/483 (33%), Positives = 246/483 (50%), Gaps = 30/483 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  + + W R DLR+ DN ALY A    +   I +FI    Q    GI      +++ SL
Sbjct: 2   SKKIAIHWFRQDLRLADNPALYQASQADET--ITIFILDKNQ----GIGGASKLWLHYSL 55

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL  K     ++      + +E +     +  +T  ++NR Y+   + RD  +++
Sbjct: 56  NSLNSSLDNK---LNFYSG----NPLEIIRKIIKENNITDFYWNRCYDKYSIDRDTQIKQ 108

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--I 182
            LQ H++   SF+ S+L+ P          YKVYTPF K LI+        + P  +   
Sbjct: 109 FLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLR 168

Query: 183 RLTGPVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +L       ++      + +Q I   + IGE  +  IL +F   KV  Y   RD  +   
Sbjct: 169 KLNNSENLDSLKLLQPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDS 228

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSPYL  G +SP Q +N ++      L    +    ++ EL+WR+F  + + +YP +
Sbjct: 229 TSKLSPYLHFGEISPNQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL 283

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+MHNR+RMI ASFL
Sbjct: 284 -HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFL 342

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q ++F+  
Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402

Query: 422 GTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSL--NYPLPIVDHKKACHHTLNQYY 475
             +IR ++PEL  +P + I  P       L +  ++L  NYP PIVD KK+    L  + 
Sbjct: 403 -EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQLHN 461

Query: 476 AAK 478
             K
Sbjct: 462 QIK 464


>gi|133921974|emb|CAI63876.1| cryptochrome 2 [Brassica napus]
          Length = 618

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 142/500 (28%), Positives = 228/500 (45%), Gaps = 30/500 (6%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS +   +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  
Sbjct: 1   MSTNKKTIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +  N   ++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLTQSLKALGSEPTLIKTHN---TVSAILDCVRATGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I  +S++  +L  P  I     + +  +  + K  +   V++ +   P   I
Sbjct: 116 KEKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMPVESVVIPPPWRLI 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            LT   T        +   +          +   +  G  NA  IL +F ++++  Y + 
Sbjct: 176 PLTAAGT-VWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKN 234

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R+ +   + +      D   +    A  +L  +  R+
Sbjct: 235 SKKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGVESAVLFLRGIGLRD 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 295 YSRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWM 353

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 354 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLD 413

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           NP IQG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIVD 
Sbjct: 414 NPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDI 473

Query: 464 KKACHHTLNQYYAAKKQSLL 483
             A           ++  ++
Sbjct: 474 DTARELLTKAISRTREAQIM 493


>gi|78217443|gb|ABB36797.1| cryptochrome 2 [Nicotiana sylvestris]
          Length = 641

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 137/497 (27%), Positives = 239/497 (48%), Gaps = 26/497 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M++ +     +VW R DLRI DN AL AA  N    V  VFI +P++  Q         +
Sbjct: 1   MESNSK---TIVWFRRDLRIEDNPALAAAARNG--SVFPVFIWSPKEEGQFYPGRVSRWW 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+ +++SL   G      +      ++  L         TK+ YN  Y+   + RD
Sbjct: 56  LKQSLIHLEQSLKSLGAELVLIKA---QSTLSALLDCIEAVGATKVVYNHLYDPVSLVRD 112

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++++L    I  +S++  +L  P  + +   +++  +  + +  ++   +      P 
Sbjct: 113 HNIKQKLGELGISVQSYNGDLLNEPWEVYDDDGKVFTTFDAYWEKSLRLQKEPVSHLPPW 172

Query: 180 PAIRLTGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQ 233
             I   G V   ++      +   ++ + +    +  G  NA   L +F + ++  Y + 
Sbjct: 173 KLIPAAGSVKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVENQLLAYSKD 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWRE 289
           R       TS LSPYL  G +S R+ +N ++ + +    +  S     A  +L  +  RE
Sbjct: 233 RLRVGGNSTSLLSPYLHFGEVSVRKVFNSVRLKQILWTKEGNSVGDESASLYLRAIGLRE 292

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R++   +P     +  +   +   WN D    +AW+QG TG+P++DA MR+L   GW+
Sbjct: 293 YSRYICFNFP-FTHERSLLNNLKFFPWNADQARFKAWRQGRTGYPLVDAGMRELWATGWI 351

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN++R+I ASF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ 
Sbjct: 352 HNKIRVIVASFFVKFLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHELERLD 411

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           NP +QG  +DP+G ++RHWLPEL  +P ++IH P             +L +NYP PI+D 
Sbjct: 412 NPEVQGFNYDPEGEYVRHWLPELARMPAEWIHHPWDAPLTVLKAAGVELGMNYPNPIIDV 471

Query: 464 KKACHHTLNQYYAAKKQ 480
             A    +   +  +++
Sbjct: 472 DVARDRLMQAIFIMREK 488


>gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454]
 gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 522

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 154/496 (31%), Positives = 235/496 (47%), Gaps = 32/496 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R+D R+ DN AL  A       V+ V++  P         A    +++ SL  +  
Sbjct: 24  VVWFRDDQRLADNPALEYATATGH-PVVCVYVHDPAPRNTRPPGAAGRWWLHESLRALNA 82

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G        S      + ++++ +     K+ +NR+Y   +   D  ++  L+ R
Sbjct: 83  ALVALGGELTVLHGSES----QAIEAFAVAIGAIKVCWNRRYSAPQRETDTAIKTALKER 138

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I   +F+  +L  P ++     + ++V++ + +A          +  P        P  
Sbjct: 139 GIAVFTFNGHLLREPWAVATRDGRPFQVFSAYWRAARHQYSPEAPQPAPQRINFFPVPDN 198

Query: 190 PSNIPRFFDYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                R  +    A+ P            +  GEQ     L  F    +  Y   RD+PA
Sbjct: 199 IGVAARVENLSALALQPRTPDWASGLRETWQCGEQAGQTQLDAFLANALTRYASGRDVPA 258

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF--------VDLLIKPKSGAFSWLNELIWREF 290
           +Q TS+LSPYL  G LS RQ W+                      SG   +L+EL WREF
Sbjct: 259 MQATSRLSPYLRFGNLSARQVWHAALSAARVGRHCGDARRTCTASSGVDKFLDELGWREF 318

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             +L+    +      F    + + W  D+  L+AW+ G TG+P++DA MR+L   GWMH
Sbjct: 319 SYYLLYHC-APLHQVNFKRQFDTMPWRADTADLRAWQHGRTGYPLVDAGMRELWHTGWMH 377

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+TASFLVK LL++WR GE +F   L+D D ASN   WQW A +G D+ PYFRIFN
Sbjct: 378 NRVRMVTASFLVKHLLINWREGEAWFWDTLVDADEASNPANWQWVAGSGADAAPYFRIFN 437

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P +QG++FDPQG ++R W+PEL  VP+  +HAP              L  +YPLP+V H+
Sbjct: 438 PVLQGQKFDPQGAYVRRWVPELARVPSGCVHAPWLAQPAQLASASVRLGQDYPLPVVPHQ 497

Query: 465 KACHHTLNQYYAAKKQ 480
           +A    L      + +
Sbjct: 498 QARERALKAMEHMRGR 513


>gi|312114970|ref|YP_004012566.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220099|gb|ADP71467.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 484

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 158/475 (33%), Positives = 232/475 (48%), Gaps = 20/475 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  ++  +  LV  R DLR+ D+ AL AA     A V+ V+I   E   +  +      +
Sbjct: 1   MPLSSRAAPALVLFRRDLRLADHPALSAAAETG-APVLPVYILDDETPGRWRMGGASRWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +Y SL  +   L  +G                 L     +     + + R YE  +   +
Sbjct: 60  LYQSLRSLGADLEARGSRLVLRHGETK----RVLGELIEETGARSVLFTRGYEPYQRALE 115

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L+  L+ R +  + F   +L+ P SI N A + ++V+TPF +AL Q    A     P 
Sbjct: 116 GRLKPSLEARGVSLRRFGGQILVEPESIANLAGEPFRVFTPFFRALSQRGAPATPLPAPQ 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                        +      P +      I   +  GE  A   L  F +  +  Y  +R
Sbjct: 176 KLAAPDSWPRSDALASLALEPTRPDWAGGIRAAWRPGETAARERLTAFIEAALPSYRTRR 235

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P I GTS+LSP+L+ G + PRQ W+ ++           + A+  L E+ WREF  HL
Sbjct: 236 DEPGIDGTSRLSPHLAFGEIGPRQIWHAVQAAAEAAGDHAAADAY--LREVGWREFSYHL 293

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +    PF P      W  D+  L+AW++G TG+PI+DA MRQL   GWMHNR+R
Sbjct: 294 LFHFPHLPEA-PFRPEFTAFPWRDDADALEAWQRGRTGYPIVDAGMRQLWQTGWMHNRVR 352

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL+K LL  W+ G ++F   L+D DLA+N   WQW A +G D+ PYFRIFNP +Q
Sbjct: 353 MIVASFLIKHLLSPWQTGADWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQ 412

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463
           G++FDP+G ++R ++PEL  +P   IH P +            L   +P PIVDH
Sbjct: 413 GEKFDPRGDYVRAFVPELAKLPASLIHKPWTASAAALRDAGVTLGETWPHPIVDH 467


>gi|163788107|ref|ZP_02182553.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
           bacterium ALC-1]
 gi|159876427|gb|EDP70485.1| deoxyribodipyrimidine photolyase-class I [Flavobacteriales
           bacterium ALC-1]
          Length = 434

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 140/472 (29%), Positives = 219/472 (46%), Gaps = 45/472 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             +V++ W R DLR+ DN   Y A    +  V+ +FI   E   +      +  FI+ +L
Sbjct: 2   TKTVNIFWFRRDLRLDDNVGFYEALK-GNHPVLPIFIFDSEILSKLPKDDARITFIHETL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++++L      ++     ++    E          +  ++ N  YE     RD  ++ 
Sbjct: 61  QNIRQTLQDN---YRSSIAMHYGKPKEVYTQLIKDYNINSVYTNHDYEPYAKERDTEVKS 117

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-R 183
            L +H +  K++ D V+     I+      YKVYTP+ ++  +     D +     A  +
Sbjct: 118 VLAEHNIEFKTYKDQVVFEKNEIVKKDGAPYKVYTPYMRSWKEKFKTLDFKIYKTKAYFK 177

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                         D  F+  + + P  E +          + +  Y   R+ PA   TS
Sbjct: 178 NIFQEINLPNLSLSDIGFETSNQLIPPYEVS---------SKLIQNYEATRNFPAQNSTS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +L P+L  G +S R+   +   E  ++          +L+ELIWREF+  ++  +P    
Sbjct: 229 RLGPHLRFGTVSIRKMVKKAITETNEI----------FLHELIWREFFMQILWHFPHTAK 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F P  ++IEW  +    +AW +G TG+P +DA MRQLN  G+MHNR+RM+  SFL K
Sbjct: 279 D-AFKPKYDRIEWRNNEGEFKAWCEGKTGYPFVDAGMRQLNETGFMHNRVRMLVGSFLCK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF  +L D D++SN G WQW A +G D+ PYFRIFNPT Q  +FD    
Sbjct: 338 HLLIDWRWGEAYFAEKLHDYDMSSNIGNWQWVAGSGVDAAPYFRIFNPTSQILKFDKNLE 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +I+ W+P+   +                    YP PIVDHK+A    L  Y 
Sbjct: 398 YIKKWVPDFQEL-------------------TYPQPIVDHKEARERCLKTYK 430


>gi|282897058|ref|ZP_06305060.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9]
 gi|281197710|gb|EFA72604.1| DNA photolyase, FAD-binding [Raphidiopsis brookii D9]
          Length = 479

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/479 (34%), Positives = 234/479 (48%), Gaps = 20/479 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR +DN  L  A      KV+ VF   P    Q  I+  +  ++   L  ++ 
Sbjct: 6   LFWHRRDLRTSDNTGLGVA-REKTKKVVGVFCLDPNILGQDDIAPARITYMIGCLKSLES 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G           D+ +  + +         +F+N   E     RD+ +   L+ R
Sbjct: 65  LYLQAGSQLLILH----DNPVRAIPNLAEALEAKAVFWNWDVEPYAQIRDRDVTLALKTR 120

Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI------ 182
            I   +   D +L  P +IL+     Y VYTPF K          +  L           
Sbjct: 121 GIETLEKNWDQLLHSPETILSGTRTPYTVYTPFWKKWHSQPKLEPIEILANCENLTAREE 180

Query: 183 RLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +        +P   D  F    + +   GE  A   L  F    +  Y E+R+ PAI G
Sbjct: 181 EIAEKSGVIKLPTARDLGFIWDGELILEPGEVAAWERLTDFLDCAIDEYEEKRNYPAIDG 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPS 300
           TS LSP L  GV+  R  W + +E       +   +G  +W  EL WREFY+H M  +P 
Sbjct: 241 TSLLSPALKFGVIGIRTIWQKTQELLAISNSQEFSNGIITWQKELAWREFYQHAMYHFPE 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G  +    +   W+ +    Q+W +G TG+PI+DAAMRQLN  GWMHNR RMI ASF
Sbjct: 301 LAEG-AYRDVFKNFPWSDNQDHFQSWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G D  P  RIFNP+ Q ++FD 
Sbjct: 360 LTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKP-LRIFNPSSQAQKFDG 418

Query: 421 QGTFIRHWLPELNNVPTQY-IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            G +IRHW+ EL +V T+Y I    + L++    L YP PIVDHKK        Y   K
Sbjct: 419 DGEYIRHWVGELASVDTEYLIGGNITPLERQ--GLGYPPPIVDHKKQQALFKQLYQQQK 475


>gi|325568101|ref|ZP_08144542.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
           12755]
 gi|325158302|gb|EGC70453.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
           12755]
          Length = 473

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/484 (34%), Positives = 258/484 (53%), Gaps = 26/484 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M++H++W R DLR+ DN AL  A     ++ +++ VF    +Q+     S     + +++
Sbjct: 1   MAIHVMWFRKDLRLEDNTALTEALLSLQANDQLLCVFHLNEKQFLPDAPS---HDYFFSA 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +    +++ ++ +           ++ + L +   +   ++L++N        +RD  ++
Sbjct: 58  VAHFIEAVKKQNLTIHLLTG-TLTEAFDQLFACYPEW--SQLYFNFDNRGYGRKRDLYIK 114

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ---NLVQADLRSLPVP 180
           + + +  V   SF++  L  P  +       YK +TP+ K  IQ    + Q         
Sbjct: 115 ELVEKKGVTVHSFEEHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKQALDFEKA 174

Query: 181 AIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           A     P   +      +    +  D    +GE  A   L+ F ++++  Y + RD+P+I
Sbjct: 175 AHFNDAPHFKAGTALLAEVLNNRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDLPSI 234

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GTS+LSP+LS G +S R+ W   +       + P +G  ++L EL WR+FY  +   +P
Sbjct: 235 KGTSRLSPFLSFGQISIRKVWAACQ------GMPPSTGKATFLKELAWRDFYHMIYFTHP 288

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                   I     ++W KD      W+ G TG+PIIDAAMRQLN  GWMHNRLRMI AS
Sbjct: 289 EQ-KNYELIEKYRNMDWQKDEEAFNKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVAS 347

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDLL+DWR GE YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGK+FD
Sbjct: 348 FLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKFD 407

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473
            +GT+I+ ++PEL  +P ++IH P+   D+        L  +YPLPIVDH +A    L+ 
Sbjct: 408 KEGTYIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIVDHNEARKRALDL 467

Query: 474 YYAA 477
           Y   
Sbjct: 468 YSKI 471


>gi|86749484|ref|YP_485980.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris HaA2]
 gi|86572512|gb|ABD07069.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
           palustris HaA2]
          Length = 487

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/489 (31%), Positives = 230/489 (47%), Gaps = 26/489 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYA 63
             +VW R+DLR++D+ AL+AA   S + +I +++           +   I      ++  
Sbjct: 8   PVIVWFRDDLRLSDHPALHAAAA-SGSPLICIYVHDEQSPQLRPPQARPIGGAARWWLAQ 66

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRRDKL 122
           SL  +   L Q+G      +      +   +     Q     + +N  +   +    D L
Sbjct: 67  SLRALAAELEQRGARLILRRGP----AAAIVGELARQVDAAAVHWNEIEIAPHRAIADDL 122

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--- 179
            E      +        +L+ P  I     +  +V+TPF + ++           P    
Sbjct: 123 AETLSMSGIDHHRHPGDLLVAPSEIRTKDGRGLRVFTPFWRRVLGLGDPPKPLPAPAMLR 182

Query: 180 --PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             P I    P T    P   D+    +   +  GE+ A  +L  F  +++  Y   RD P
Sbjct: 183 AGPDIASDDPATWQLEPTAPDW-AGGLRASWTPGERAAHDLLTAFL-DRLPGYAADRDRP 240

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
               TS LSP+L  G +SPRQ W   +           +    +L+EL WREF RHL+  
Sbjct: 241 DRDATSLLSPHLRFGEISPRQLWYAAR-FAAAKRPAIAADIDKFLSELGWREFCRHLLHD 299

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +   +      +   W +D   L AW++G TG+PI+DA MRQL   G MHNR+RM+ 
Sbjct: 300 HPDLAE-RNLQSAFDAFPWTRDDAALAAWQRGRTGYPIVDAGMRQLWHTGVMHNRIRMVV 358

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVK LL+DWR+GEE+F   L+D D  SN G WQW A +G D+ PYFR+FNP +QG++
Sbjct: 359 ASFLVKHLLIDWRLGEEWFWDTLVDADPGSNPGNWQWVAGSGADAAPYFRVFNPILQGEK 418

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTL 471
           FDP G ++R W+PE+  +P ++IH P              L  NYP PIVDHK      L
Sbjct: 419 FDPAGDYVRRWVPEIAALPNKFIHQPWTATLLERAAAGVALGGNYPAPIVDHKVGRARAL 478

Query: 472 NQYYAAKKQ 480
             Y   ++ 
Sbjct: 479 AAYAELRQS 487


>gi|39936242|ref|NP_948518.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
           CGA009]
 gi|39650097|emb|CAE28620.1| Deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
           CGA009]
          Length = 483

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/495 (30%), Positives = 228/495 (46%), Gaps = 27/495 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M    +    +VW R+DLR+ D+ AL+AA   S A V+ V++          +      +
Sbjct: 1   MLTPASSRPLIVWFRDDLRLADHPALHAAAQ-SGAPVLCVYVLDEVSDDVRALGGAVRWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRR 119
           +  SL  ++  L   G      +          L     Q     + +N  +   +    
Sbjct: 60  LAQSLRALESELRALGGALILRRGPT----AAVLAELAQQHDAAAVHWNEIEIAAHRAVA 115

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D L +      +         L+ P +I +   +  +V+TPF + ++   +    + LP 
Sbjct: 116 DALADALTVAGIAYHRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLS--LGDPPQPLPR 173

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYV 231
           P      P  P+   +  D+  +   P +  G        E  A   L  F   +   Y 
Sbjct: 174 PTTLRPAPAVPTE--QLSDWQLEPTAPDWAGGLRQTWTPGEAAAQTRLAAFLAMQP-GYA 230

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E RD P    TS LSP+L  G +SPRQ W   +    +           +L+E+ WREF 
Sbjct: 231 EGRDYPDRHITSGLSPHLRFGEISPRQVWYAARFAAAERPAIA-PDIDKFLSEVGWREFC 289

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RHL+  +P +   +   P  +   W  D  +L AW++G TG+PI+DA MR+L   G MHN
Sbjct: 290 RHLLFDHPDLA-SRNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHN 348

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM+  SFLVK LL+DWR+GE++F   L+D D  SN G WQW A  G D+ PYFR+FNP
Sbjct: 349 RVRMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNP 408

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKK 465
            +Q ++FD  G +IR W+PEL  +P   IH P +            L  NYP PIVDHK 
Sbjct: 409 VLQSEKFDAGGAYIRRWVPELARLPNDLIHQPWTATPLELAAAGIKLGGNYPGPIVDHKT 468

Query: 466 ACHHTLNQYYAAKKQ 480
                L+ Y   +++
Sbjct: 469 GRQRALSAYAELRQR 483


>gi|83764373|dbj|BAE54523.1| cryptochrome [Marchantia paleacea var. diptera]
 gi|83764375|dbj|BAE54524.1| cryptochrome [Marchantia paleacea var. diptera]
          Length = 696

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 146/508 (28%), Positives = 236/508 (46%), Gaps = 38/508 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A T     +VW R DLR+ DN AL AA       VI VFI +PE+  Q         +
Sbjct: 1   MAART-----IVWFRRDLRVEDNPALVAAARAG--IVIPVFIWSPEEDGQFHPGRVSRWW 53

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+ +  SL   G      +     D++  L     Q   T++FYN  Y+   + RD
Sbjct: 54  LKQSLIHLDSSLKSLGSPLIMRKSP---DTLTVLLDIVQQVGATQVFYNHLYDPVSLVRD 110

Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +++ L  H +   +F+  +L  P  + +   Q +  +  F    +    + +   L  
Sbjct: 111 HRVKQGLSIHNIPVHTFNGDLLYEPWEVYDDEGQAFTTFDDFWDKCMNMPFEPEAPLL-S 169

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYY 230
           P   +  P    ++ R  D   +          +   +  G  +A   L  F K  ++ Y
Sbjct: 170 PRRLVGLPPGRISVGRIDDLGLENEYERSSNALLGRAWAPGWSSANKALEVFMKGPLHDY 229

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELI 286
              R       TSQLSP+L  G +S R+ ++  + +      +     +     +L  + 
Sbjct: 230 ATHRIKADNANTSQLSPHLHFGEVSVRKIFHEARTKQILWARENSYVGEQSVGMFLRAIG 289

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           +RE+ R+L   +P     +  +   +   W  D +  ++W+QG TG+P++DA MR+L   
Sbjct: 290 FREYSRYLSFNFP-FTHERSLLANLKSFPWRIDENSFKSWRQGRTGYPLVDAGMRELWAT 348

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GW+HNR+R++ +SF VK L + WR G +YF   LLD DL  +  GWQ+ + +  D     
Sbjct: 349 GWLHNRIRVVVSSFCVKFLQLPWRWGMKYFWDTLLDADLECDVLGWQYISGSLPDGHELD 408

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPI 460
           R+ NP I+G +FDP+G ++R WLPEL+ +PT++IH P             +L  NYPLPI
Sbjct: 409 RMENPQIEGYKFDPEGEYVRRWLPELSRLPTEWIHHPWDAPANVLRAAGVELGSNYPLPI 468

Query: 461 VDHKKAC---HHTLNQYY---AAKKQSL 482
           VD   A      +L + +   AA K +L
Sbjct: 469 VDISSARDQLQQSLAEMWEREAASKAAL 496


>gi|261876459|dbj|BAI47555.1| cryptochrome2 [Glycine max]
          Length = 642

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 137/477 (28%), Positives = 226/477 (47%), Gaps = 23/477 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA       V+ V++  P++  Q         ++  SL  + 
Sbjct: 6   TIVWFRRDLRIEDNPALTAAAKEG--SVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAHLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           +SL   G      +  +   +   L       + TK+ +N  Y+   + RD  ++++L +
Sbjct: 64  QSLKSLGSRLVLIKTHSTAVA---LVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +S++  +L  P  + + + + +  +  F K  +   +       P   I   G +
Sbjct: 121 QGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHVQMDIVSVVPPWQLIPAEGKI 180

Query: 189 TPSNIPRF-----FDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              ++         + P  A+    +  G +NA   LR+F +  + +Y ++R     + T
Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADRALREFVELHLLHYSKKRLKVGGEST 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSPYL  G LS R+ +     +      +     +  A  +L  +  RE+ R+L   +
Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +  +   +   WN D  + + W+QG TGFP++DA MR+L   GW+HNR+R+I +
Sbjct: 301 P-FTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVS 359

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ +    D     R+ NP IQG +F
Sbjct: 360 SFAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKF 419

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
           DP+G ++R WLPEL  +PT++IH P             +L  NYP PI+D   A   
Sbjct: 420 DPEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARER 476


>gi|21242230|ref|NP_641812.1| photolyase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107653|gb|AAM36348.1| photolyase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 484

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/483 (32%), Positives = 224/483 (46%), Gaps = 17/483 (3%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
              MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + 
Sbjct: 10  RVRMSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHR 68

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  +L   G            +S + LD    Q     +++NR+YE     RD  +
Sbjct: 69  SLAALDGALRALGSGLVIR----VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 124

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L+ R I  +S + ++L  P  +       YKV+TPF +  +  L        P    
Sbjct: 125 KRDLRERGIEVQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAIGAPRSLP 184

Query: 183 RLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            L   +    +      P     Q     +  GE  A  +L  F    +  Y E RD P 
Sbjct: 185 PLPASLKTDALDTLQLVPGLQWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPD 244

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             GTSQLSP+L  G ++P +  N L+        +  +   +++ +L WR+F  HL+  +
Sbjct: 245 RVGTSQLSPHLHFGEIAPWRIANTLETH---RTARNGAEIDAYIRQLGWRDFAYHLLHHF 301

Query: 299 PSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           P     +   P     +W   D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI 
Sbjct: 302 PD-TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIV 360

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++
Sbjct: 361 ASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEK 420

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYY 475
           FDPQ  +I  W+PEL  +  +   AP    L    L+  YP  PI+   +     L  Y 
Sbjct: 421 FDPQAAYITRWVPELGKLAVKERFAPWLHPLSLARLAPEYPRTPIIGLAEGRDAALAAYA 480

Query: 476 AAK 478
             +
Sbjct: 481 KTR 483


>gi|222148397|ref|YP_002549354.1| DNA photolyase [Agrobacterium vitis S4]
 gi|221735385|gb|ACM36348.1| DNA photolyase [Agrobacterium vitis S4]
          Length = 483

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/484 (32%), Positives = 239/484 (49%), Gaps = 27/484 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  ++W R DLR+ DN+A   A   +   VI ++I  PE+     +   Q+ +++ SL+ 
Sbjct: 7   SPTILWFRKDLRLDDNRA-LLAALQAAGPVIPLYIREPEEMGTGPLGPAQAWWLHHSLVS 65

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL   G      +        + L     +     + +NR+Y+ + +  D  L+  L
Sbjct: 66  LDQSLQSYGSRLVLRRGPPG----QVLRHLIEETGSKAVHWNRRYDPSGMAIDAELKAAL 121

Query: 128 QHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +       S    +L  P  +   +   ++VYTPF +AL +          P     L  
Sbjct: 122 RSDGLEATSHAGFLLHEPSKVKTGSGGPFRVYTPFWRALEKQGDPPPPVERPKT---LHN 178

Query: 187 PVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P    +  R  D+      P        ++  GE  A   L +F    +  Y  QRD PA
Sbjct: 179 PAHWPDSDRLEDWQLLPTKPDWAKEFSEIWTPGEPGAQDKLSQFIDHGLKGYRTQRDFPA 238

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  TS LSP+L++G +SP + W+       D+          +  EL+WREF  HL+  +
Sbjct: 239 LPHTSGLSPHLALGEISPARIWHATIGLGDDVSTDD---YVHFRKELVWREFSYHLLFHF 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             +     +        W K++  L AW++G TG+PI+DA MRQL   G MHNR+RMI A
Sbjct: 296 ADLASQN-WNDRFNDFPWKKNAEFLSAWQRGQTGYPIVDAGMRQLWRHGVMHNRVRMIVA 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL+KDL++DWR GE +F   L+D D ASN   WQW A +G D+ P+FRIFNP  Q ++F
Sbjct: 355 SFLIKDLMIDWREGEAWFRYTLVDADPASNAASWQWVAGSGADASPFFRIFNPITQSEKF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLN 472
           DP G +IR ++PEL  +P   IH    AP   L+K  ++L   YP P+VDHK+A    L 
Sbjct: 415 DPDGDYIRQFVPELAKLPNNLIHRPFEAPAPLLEKAGITLGKTYPAPLVDHKRARAVALE 474

Query: 473 QYYA 476
            Y +
Sbjct: 475 AYKS 478


>gi|296805628|ref|XP_002843638.1| deoxyribodipyrimidine photo-lyase [Arthroderma otae CBS 113480]
 gi|238844940|gb|EEQ34602.1| deoxyribodipyrimidine photo-lyase [Arthroderma otae CBS 113480]
          Length = 591

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 166/487 (34%), Positives = 241/487 (49%), Gaps = 49/487 (10%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ DN++L+ A     N D  +I ++I +PE    H  S  +   I  +L  
Sbjct: 100 VHWFKSDLRLQDNRSLHKAYSLARNYDIPLICIYIFSPEDLTAHLCSRPRVDLILRTLAI 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L ++ I           D  + +   C Q    ++F N +YE++E+RR+  + +  
Sbjct: 160 LKSDLEKQDIPLYMETQEKRKDIPKRIVELCKQWGANQIFTNLEYEVDELRREAKIVRLC 219

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-------------- 172
            +  +I  + DD+ ++ PG +     + Y VYTP+ ++ +  L++               
Sbjct: 220 ARQGIIFDTEDDTCVVAPGDLSTQQGKQYAVYTPWYRSWVAFLMEHPENLELVDAPTRNA 279

Query: 173 -DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
            D R           P  P+   +  D   Q    M+P GE  A   L++F  ++   Y 
Sbjct: 280 GDARKHFEELFHSQVPEAPT-YMQLSDSESQRFREMYPAGEHEADRRLKEFLAKRGNQYH 338

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E RD  + Q TS LSPY S G LS R      +E  V                       
Sbjct: 339 ENRDFMSSQTTSVLSPYFSCGSLSARAAICMAQEANV----------------------- 375

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                 +P +CM K   P    +EW  D     AW +G TGFPI+DAAMRQL    WMHN
Sbjct: 376 -----HWPYICMNKCLNPEFTNLEWEYDLAQFNAWCEGKTGFPIVDAAMRQLKHSAWMHN 430

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R RMI +SFL KDLL+DWR+GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP
Sbjct: 431 RTRMIVSSFLSKDLLIDWRLGEQFFMKHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNP 490

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHT 470
             Q +RFDP G +IRHW+PEL N+    IH P+    +     N YP PIV+H ++    
Sbjct: 491 LRQSERFDPNGDYIRHWVPELRNIEGSAIHDPYGRGARETAEKNGYPRPIVNHSESRSKA 550

Query: 471 LNQYYAA 477
           L +Y  A
Sbjct: 551 LERYKKA 557


>gi|313639222|gb|EFS04159.1| deoxyribodipyrimidine photo-lyase [Listeria seeligeri FSL S4-171]
          Length = 471

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 167/479 (34%), Positives = 245/479 (51%), Gaps = 25/479 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC + D  ++ +F   PEQ+      +      ++S+   
Sbjct: 2   TSVMWFRRDLRLNDNKALYQACRDKDDLIL-LFQVNPEQFIN---GSPSHQAFFSSVAYF 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRRD-KLLEKR 126
           ++ L +       H    F + +  L+    +     K+++NR       +RD   L+  
Sbjct: 58  KQKLDK-----IAHLQIMFGEPMGLLEKLKEKIPAWDKVYFNRDETGYGAKRDEAALQFF 112

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +  +   ++ D+ L     +   A   YKV+TP+ K   + + +  L            
Sbjct: 113 AKEEIEVFAYHDAYLHHANDVKKSATDFYKVFTPYYKKWREEIKERPLPISLNSEKVNKT 172

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P    +F +   +        +GEQ A + L  F KE +  Y E RD P +  TS L
Sbjct: 173 ILFPEEEKQFAEMTRELPPLDATKLGEQAAQNHLNHFVKENLADYNEARDFPDLDKTSHL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G +S R  W  ++E       +  +G  ++  EL WR+FY  +   +P+    +
Sbjct: 233 SRFLRTGEVSIRTVWQAVQEA------EHTNGRATFEKELCWRDFYNMIYVSFPNQ-KNE 285

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                   IEW  +    Q W+QG TGFP++DAAMRQL   GWMHNRLRMITASFL KDL
Sbjct: 286 AIQANYRFIEWENNRTNFQKWQQGITGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FI
Sbjct: 346 LIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFI 405

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++ EL  +P ++IH P     +        +  +YP PIVDHK+     + +Y  +K
Sbjct: 406 RKYVQELAGLPDKFIHQPEKMTKQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYEFSK 464


>gi|126663929|ref|ZP_01734924.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
           BAL38]
 gi|126624193|gb|EAZ94886.1| deoxyribodipyrimidine photolyase-class I [Flavobacteria bacterium
           BAL38]
          Length = 428

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/473 (32%), Positives = 217/473 (45%), Gaps = 51/473 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++ W R DLR+ DN  L+ A  NS   V+ +FI   E   Q      +  FI+  L ++
Sbjct: 1   MNIFWFRRDLRLEDNVGLFHAL-NSTEDVLPIFIFDSEILSQLPKDDARVSFIHEQLEKI 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q  L++ G              IE       +  +T ++ N  YE    +RDK + +   
Sbjct: 60  QSELNKIGKSLAVFHGKP----IEIFTQLISENTITSVYTNHDYEPYARKRDKEMNQLFT 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   +  D V+     ++      Y VYTPF K   +N  +  L             
Sbjct: 116 TNGISFLTSKDQVIFEKSEVVKDDGSPYVVYTPFSKKWKENFKKIKLVHYTSEDKLDKVA 175

Query: 188 VTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                     D  F+  +     F + E              +  Y   R+ PA+  TS 
Sbjct: 176 KHSYPFLSLTDIGFEKSNIKVSAFDVSE------------NLIQNYEATRNFPALNKTSY 223

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           L  YL  G +S R+   +   E  D          ++ NELIWREF+  ++  +P     
Sbjct: 224 LGIYLRFGAVSIRKMIAKAIAEKND----------TFWNELIWREFFMQILWHFPH-TYN 272

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F P  + I WN +  L Q W +G TG+P +DA MR+LN+ G MHNR+RMI ASFL K 
Sbjct: 273 SSFRPKYDGIVWNNNEELFQKWCEGKTGYPFVDAGMRELNSTGHMHNRVRMIVASFLCKH 332

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +LLD ++ASN G WQWAA +G D+ PYFRIFNPT Q K+FD    +
Sbjct: 333 LLIDWRWGETYFAQKLLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLKY 392

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ W+PEL    T+Y                YP PIVDHK+A    L  Y  A
Sbjct: 393 IKKWIPELE---TEY----------------YPKPIVDHKEARERCLKVYKEA 426


>gi|89900170|ref|YP_522641.1| deoxyribodipyrimidine photolyase [Rhodoferax ferrireducens T118]
 gi|89344907|gb|ABD69110.1| Deoxyribodipyrimidine photo-lyase type I [Rhodoferax ferrireducens
           T118]
          Length = 492

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/488 (34%), Positives = 238/488 (48%), Gaps = 24/488 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ DN A       +  ++  VF+   +       + R+  FI ASL ++ 
Sbjct: 8   GLMWFRRDLRVIDNAA-LCLALAACRQLHCVFVFDRDILDTLPRADRRVEFIRASLCELD 66

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L Q               + E + +     +V  +F    YE   + RD  +   L H
Sbjct: 67  VALGQLSGKAGVGLIVRHAVASEEIVTLAKTLQVQAVFAAHDYEPQALARDARVRGALAH 126

Query: 130 RVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I   +  D V+     IL+     Y V+TP++   +  +    LR      +      
Sbjct: 127 VGIVLHTCKDHVIFENREILSKTGTPYGVFTPYKNTWLATVTPQHLRHHDATPVAQALVP 186

Query: 189 TPSNIP----RFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            P  +           F+  +      P G      +   F  E++  Y E RD+PA++G
Sbjct: 187 RPEGLQQPVPTLAAIGFEKTNLSQLKIPTGASGGARLFEDFF-ERMDSYHETRDLPAVKG 245

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S L  +L  G +S RQ      +      I+   GA  WL ELIWR+FY  ++A +P V
Sbjct: 246 PSYLGVHLRFGTVSVRQLAATALQRQ----IQGSRGAAVWLGELIWRDFYFSILANFPHV 301

Query: 302 CMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             G  F P  + I+W    H   L QAW +G TG+P++DAAM Q+N  G+MHNRLRM+  
Sbjct: 302 AQG-AFKPEYDAIKWEHGKHADSLFQAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVAG 360

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDL +DWR GE+YF   L D DLA+NNGGWQW +S+G D+ PYFRIFNP  Q ++F
Sbjct: 361 SFLVKDLGIDWRWGEKYFARHLNDFDLAANNGGWQWVSSSGCDAQPYFRIFNPVTQSEKF 420

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472
           D  G FIR +LP+L  +P++ IHAP +        +   L  NYP PIV H  A   TL 
Sbjct: 421 DADGKFIRRYLPQLARLPSKVIHAPWTAQALELQMEGVTLGQNYPAPIVAHAAARALTLQ 480

Query: 473 QYYAAKKQ 480
           +Y   KK 
Sbjct: 481 RYAVVKKH 488


>gi|188575662|ref|YP_001912591.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520114|gb|ACD58059.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 472

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 228/480 (47%), Gaps = 17/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + SL 
Sbjct: 1   MSYAIVWFRRDLRLQDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L   G            DS + LD+   Q     +++NR+YE     RD  +++ 
Sbjct: 60  ALEDALRALGSGLVIR----AGDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDAQIKRA 115

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ R I  +S + ++L  P  +       YKV+TPF +  +  L        P     L 
Sbjct: 116 LRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRSLPPLP 175

Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +    +      P     Q     +  GE  A  +L  F    +  Y + RD P   G
Sbjct: 176 AMLKTDALDTLQLVPSLNWDQGFWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDRPDRVG 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  + L+        +  +    ++ +L WR+F  HL+  +P  
Sbjct: 236 TSQLSPHLHFGEIAPWRIASALE---AQRTARNGAEIDGYIRQLGWRDFAYHLLHHFPD- 291

Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              +   P  E  +W K D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI ASF
Sbjct: 292 TTNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 351

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDP
Sbjct: 352 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411

Query: 421 QGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
             T+I  W+PEL  +P +   AP    L     +  YP  PI+   +     L  Y  ++
Sbjct: 412 HATYITRWVPELGKLPVKERFAPWLHPLSLARFAPEYPRTPIIGLAEGRDAALAAYSKSR 471


>gi|45935264|gb|AAS79667.1| cryptochrome 2B apoprotein [Pisum sativum]
 gi|45935266|gb|AAS79668.1| cryptochrome 2B apoprotein [Pisum sativum]
          Length = 598

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 137/481 (28%), Positives = 228/481 (47%), Gaps = 23/481 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            M+  +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL
Sbjct: 2   GMNRTIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + + +SL   G      +    D +++ L       + TK+ +N  Y+   + RD  +++
Sbjct: 60  VHLDQSLKSLGAGLVIIKT---DSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKE 116

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +L +  V  +S++  +L  P  I + +   +  + PF    +   ++      P   I  
Sbjct: 117 KLVEQGVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILA 176

Query: 185 TGPVTPSNIPRF------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            G V   +I +             ++   +  G   +   L +F +  + +Y   R    
Sbjct: 177 QGKVEKHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLG 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294
              TS LSPY+  G LS R+ +   + +      +  I  +  A  +L  + +RE+ R+L
Sbjct: 237 GDSTSLLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYL 296

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P   + +P +   +   WN D    +AW+QG TG+P++DA MR+L   GW+HN++R
Sbjct: 297 CFSFP-FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ +P + 
Sbjct: 356 VIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVL 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH 468
           G+++DP G +IR WLPEL  +P ++IH P             +L  NYP PI+D   A  
Sbjct: 416 GRKYDPAGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIIDIDLARE 475

Query: 469 H 469
            
Sbjct: 476 Q 476


>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
           PCC 7942]
 gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
           Synechococcus sp. (Anacystis nidulans)
 gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
 gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase  RECEIVED X-Rays Dose 1.2 Exp15
           PhotonsMM2
 gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase  RECEIVED X-Rays Dose 4.8 Exp15
           PhotonsMM2
 gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase  RECEIVED X-Rays Dose
           1.2 Exp15 PhotonsMM2
 gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase  RECEIVED X-Rays Dose 4.8
           Exp15 PhotonsMM2
 gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
 gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
 gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
           PCC 7942]
          Length = 484

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/479 (35%), Positives = 232/479 (48%), Gaps = 23/479 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L AA   S A++I +F   P+  +   ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRLSDNIGLAAARAQS-AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      Q     D    +     Q +   +++N+  E     RD  +   L+  
Sbjct: 65  RYQQAGSRLLLLQG----DPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLPVPAIR 183
            I      D +L  P  IL+ +   Y VY PF K                L  L    + 
Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              P+  S +P      F   D  FP   GE  A+  L++FC   +  Y  QR+ PA  G
Sbjct: 181 AIAPLLLSELPTLKQLGFDW-DGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAG 239

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           TS LSP L  G +  RQ W             + ++    W  EL WREFY+H +  +PS
Sbjct: 240 TSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPS 299

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G P+    ++  W     L  AW Q  TG+PI+DAAMRQL   GWMHNR RMI ASF
Sbjct: 300 LADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASF 358

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL++DWR GE++FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q K+FD 
Sbjct: 359 LTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDA 417

Query: 421 QGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
             T+I+ WLPEL +V P   I    + +++      YP PIV+H          Y   K
Sbjct: 418 TATYIKRWLPELRHVHPKDLISGEITPIERR----GYPAPIVNHNLRQKQFKALYNQLK 472


>gi|153007684|ref|YP_001368899.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
           49188]
 gi|151559572|gb|ABS13070.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
           49188]
          Length = 484

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/472 (36%), Positives = 250/472 (52%), Gaps = 21/472 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-EQWRQHGISARQSHFIYASLLQV 68
            LVWLRNDLRI DN AL AA       + AV++     + R  G + R   ++  SL  +
Sbjct: 21  ALVWLRNDLRINDNPALDAAAETG-GHITAVYVHETVAEIRAPGCAVR--WWLDQSLEAI 77

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K L+ +GI          D     L     +  VT+LF+NR+Y   E   D  L+ +L+
Sbjct: 78  RKQLADRGIELLIETGDPRD----ILPQLIAKLAVTELFWNRRYAPAEREFDANLKAQLK 133

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                  SF  ++LL P  +   +   Y+V+TPF KAL  + +   L             
Sbjct: 134 ESGTGVTSFPGNLLLEPWELKTASDTPYQVFTPFAKALRHHHIPRPLSRRQWDIKPTQET 193

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               N+P +     +  D ++ IGE  A   L +F +  +  Y E RD+P I GTS+LSP
Sbjct: 194 CYSPNVPAWA----KKFDGLWNIGEDAARDCLTRFLENTLSTYTEDRDVPGIDGTSRLSP 249

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +S RQ W      F+D     ++G   +L+ELIWR+F  H +     +      
Sbjct: 250 HLRFGEISARQAWYATL-AFMDEHHSARAGGEKFLSELIWRDFNYHQLYHRRDISRH-DM 307

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I W  D    +AW++G TGFPIIDA MRQL   GWMHNR+RM+ ASFL K+LL+
Sbjct: 308 RDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRMLVASFLTKNLLI 367

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GEE+F   L+DGD+ASN G WQW A  G D+ PYFR+FNP +QG++FD +G ++RH
Sbjct: 368 DWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAPYFRVFNPILQGEKFDAEGQYVRH 427

Query: 428 WLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPIVDHKKACHHTLNQ 473
           W+PEL+ +  +++H    AP   L    ++L   YP PI+D + +      +
Sbjct: 428 WVPELSGLSNKWLHKPFEAPKDVLTSAGIALGSTYPKPIIDLQASQREARKR 479


>gi|15675407|ref|NP_269581.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           M1 GAS]
 gi|71911049|ref|YP_282599.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
 gi|13622594|gb|AAK34302.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           M1 GAS]
 gi|71853831|gb|AAZ51854.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
          Length = 469

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/480 (36%), Positives = 247/480 (51%), Gaps = 22/480 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K L  +GI              + L         T +++N         RD+   +  +
Sbjct: 59  RKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQKAAQFFK 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   ++ D  L     I+N + Q YKV+TP+ +       +  ++ + +   R    
Sbjct: 116 KNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELSQGRWLNL 174

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            TP ++ R  +  F+            A   L +F ++++  Y   RD PA  GTS+LSP
Sbjct: 175 ETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP 233

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L IG +  R  ++ +++           G  ++L EL WR+FY  +   YP     +P 
Sbjct: 234 FLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPDQ-KTQPI 286

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASFL KDLL 
Sbjct: 287 QKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLC 346

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP+G FI+ 
Sbjct: 347 DWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKA 406

Query: 428 WLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +LP+L +VP +Y+H P              +  +YP PIVDH K     + +Y  AK+++
Sbjct: 407 YLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKA 466


>gi|746118|prf||2017201A DNA photolyase
          Length = 486

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/477 (35%), Positives = 241/477 (50%), Gaps = 24/477 (5%)

Query: 12  VWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           VW R D R+ D+ AL  A         K +A F   P   +   +      + + +++Q 
Sbjct: 16  VWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP---KTASVEPVHHDYFFQTVMQF 72

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L   G        +     +  L     +  +  ++ N     +   RD+  E  L 
Sbjct: 73  KQMLKTNGGDLYIITGTIEGGQLSKLLQAFPE--IDAVYANDDRVGDGRLRDEAAEHFLA 130

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--T 185
            + +   +F+D+ L  P  +L      YKV+TP+ KA  +   +          +     
Sbjct: 131 KQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDVLLGSVHK 190

Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           G          F+   +     +  IGE++A+  L+ F K+++  Y   RD P+I GTS+
Sbjct: 191 GTAPDREAETLFNNLIKKCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSR 250

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY+  G +S R  +  +     D        A ++L EL WR+FYR +  + P  C  
Sbjct: 251 LSPYIKTGAVSSRSIYYHILNAEADSY-----SAETFLKELAWRDFYRMVHFYEPD-CKD 304

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +    ++ W+ D   L +WK+G TGFPI+DA MRQL   GWMHNRLRMITASFL KD
Sbjct: 305 REIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKD 364

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YF   L+D D +SN GGWQWAAS G D+VPYFRIFNP  Q KRFD  GT+
Sbjct: 365 LLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTY 424

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
           IR ++PELN+VP  YIH P    +      K  L  +YPLPIVDH K     L+ + 
Sbjct: 425 IRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALSFFK 481


>gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
 gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
 gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
 gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
           Nidulans
          Length = 474

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/479 (35%), Positives = 232/479 (48%), Gaps = 23/479 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L AA   S A++I +F   P+  +   ++  +  ++   L ++Q+
Sbjct: 5   LFWHRRDLRLSDNIGLAAARAQS-AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      Q     D    +     Q +   +++N+  E     RD  +   L+  
Sbjct: 64  RYQQAGSRLLLLQG----DPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLPVPAIR 183
            I      D +L  P  IL+ +   Y VY PF K                L  L    + 
Sbjct: 120 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 179

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              P+  S +P      F   D  FP   GE  A+  L++FC   +  Y  QR+ PA  G
Sbjct: 180 AIAPLLLSELPTLKQLGFDW-DGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAG 238

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           TS LSP L  G +  RQ W             + ++    W  EL WREFY+H +  +PS
Sbjct: 239 TSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPS 298

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G P+    ++  W     L  AW Q  TG+PI+DAAMRQL   GWMHNR RMI ASF
Sbjct: 299 LADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASF 357

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL++DWR GE++FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q K+FD 
Sbjct: 358 LTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDA 416

Query: 421 QGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
             T+I+ WLPEL +V P   I    + +++      YP PIV+H          Y   K
Sbjct: 417 TATYIKRWLPELRHVHPKDLISGEITPIERR----GYPAPIVNHNLRQKQFKALYNQLK 471


>gi|21230891|ref|NP_636808.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66769110|ref|YP_243872.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21112501|gb|AAM40732.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574442|gb|AAY49852.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 484

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 229/480 (47%), Gaps = 17/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  Q    A    + + SL 
Sbjct: 13  MSYAIVWFRRDLRLEDNPALRAALDAGHDP-IPLYIDAPHEEGQWAPGAASRAWRHRSLA 71

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL  +G      Q     DS + LD+   Q     +++NR+YE     RD  +++ 
Sbjct: 72  ALDASLRARGSALLIRQG----DSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRS 127

Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ R    +S + ++L  P ++     + YKV+TPF +  +  L   D    P     L 
Sbjct: 128 LRERGLEVQSCNAALLFEPWTLATQQGRPYKVFTPFWRNALTQLRLPDAMPAPRSLPPLP 187

Query: 186 GPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +   ++      P  A D      +  GE  A  +L  F    +  Y E RD P   G
Sbjct: 188 ASLDGVHVDALNLLPTPAWDQGFWEHWQPGEAGAHEMLEIFVDGALSGYRENRDRPDRVG 247

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  + L+        +  +    ++ +L WR+F  HL+  +P  
Sbjct: 248 TSQLSPHLHFGEIAPWRIASTLE---AQRSARNGADIDGYIRQLGWRDFAYHLLHHFPDT 304

Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  P     +W   D   L AW++G TG PI+DA +RQL   GWMHNR+RMI AS 
Sbjct: 305 TTQN-LNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMIVASL 363

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L V W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDP
Sbjct: 364 LCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 423

Query: 421 QGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYP-LPIVDHKKACHHTLNQYYAAK 478
           Q T+I  W+PEL  +P +   AP    L    L+  YP  PI+   +     L  Y   +
Sbjct: 424 QATYITRWIPELAALPVKERFAPWLHPLSLARLAPTYPRAPIIGLAEGRDAALAAYAGTR 483


>gi|288553212|ref|YP_003425147.1| deoxyribodipyrimidine photolyase PhrB [Bacillus pseudofirmus OF4]
 gi|298286845|sp|Q04449|PHR_BACPE RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|288544372|gb|ADC48255.1| Deoxyribodipyrimidine photolyase, FAD-binding PhrB [Bacillus
           pseudofirmus OF4]
          Length = 479

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 168/477 (35%), Positives = 242/477 (50%), Gaps = 25/477 (5%)

Query: 12  VWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           VW R D R+ D+ AL  A         K +A F   P   +   +      + + +++Q 
Sbjct: 10  VWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP---KTASVEPVHHDYFFQTVMQF 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L   G        +      + L ++     +  ++ N     +   RD+  E  L 
Sbjct: 67  KQMLKTNGGDLYIITGTIEGALSKLLQAFP---EIDAVYANDDRVGDGRLRDEAAEHFLA 123

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--T 185
            + +   +F+D+ L  P  +L      YKV+TP+ KA  +   +          +     
Sbjct: 124 KQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDVLLGSVHK 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           G          F+   +     +  IGE++A+  L+ F K+++  Y   RD P+I GTS+
Sbjct: 184 GTAPDREAETLFNNLIKKCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSR 243

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY+  G +S R  +  +     D        A ++L EL WR+FYR +  + P  C  
Sbjct: 244 LSPYIKTGAVSSRSIYYHILNAEADSY-----SAETFLKELAWRDFYRMVHFYEPD-CKD 297

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +    ++ W+ D   L +WK+G TGFPI+DA MRQL   GWMHNRLRMITASFL KD
Sbjct: 298 REIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKD 357

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR+GE YF   L+D D +SN GGWQWAAS G D+VPYFRIFNP  Q KRFD  GT+
Sbjct: 358 LLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTY 417

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
           IR ++PELN+VP  YIH P    +      K  L  +YPLPIVDH K     L+ + 
Sbjct: 418 IRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALSFFK 474


>gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5]
 gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
           palustris BisB5]
          Length = 487

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 149/497 (29%), Positives = 232/497 (46%), Gaps = 27/497 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-----QHGISA 55
           M   T   V +VW R+DLR++D+ AL+ A   S   +I +++   +  +        +  
Sbjct: 1   MPNNTPRPV-IVWFRDDLRLSDHPALHQAAA-SGGPLICIYVFDEDSAQLRSPQARPLGG 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEI 114
               ++  SL  +  SL ++G      +      +   +     Q   + + +N  +   
Sbjct: 59  ASRWWLAQSLRALAASLEKRGARLILRRGP----AAAIIAELARQVDASAVHWNEIEIAP 114

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +    D L E      +        +L  P  +     +  +V+TPF + ++       L
Sbjct: 115 HRAVADDLAEALSVAGIDHHRHRGDLLASPAEVRTKEGRGLRVFTPFWRRVLGLGDPPKL 174

Query: 175 RSLPVPAIRLTGPV-----TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
              P       GP      +    P   D+    +   +  GE  A   L  F  + +  
Sbjct: 175 LPAPKTLSAAQGPSGDQLDSWMLEPTEPDW-AGGLRESWTPGEGAAQDNLTAFL-DALPG 232

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y E RD P    TS+LSP+L  G +SPRQ W   +    +           +L+EL WRE
Sbjct: 233 YTEGRDRPDCAATSRLSPHLRFGEISPRQVWYAARFAAAERPAIA-GDIDKFLSELGWRE 291

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F RHL+  +P +   +      +   W  D+  L AW++G TG+PI+DA MR+L   G M
Sbjct: 292 FCRHLLHDHPDLAE-RNLQASFDAFPWITDAAALHAWQRGCTGYPIVDAGMRELWHTGVM 350

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RM+ ASFLVK LL+DWR GE++F   L+D D  SN   WQW A +G D+ PYFR+F
Sbjct: 351 HNRVRMVVASFLVKHLLIDWRCGEQWFWDTLVDADAGSNPANWQWVAGSGADAAPYFRVF 410

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDH 463
           NP +QG++FDP G ++R W+PEL ++P ++IH P +            L  NYP PI+DH
Sbjct: 411 NPILQGEKFDPAGDYVRRWVPELASLPAKFIHQPWTATPFELAAAGVTLGGNYPEPIIDH 470

Query: 464 KKACHHTLNQYYAAKKQ 480
           +      L  Y   ++ 
Sbjct: 471 RVGRERALAAYAKTRQH 487


>gi|187927713|ref|YP_001898200.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
 gi|187724603|gb|ACD25768.1| Deoxyribodipyrimidine photo-lyase [Ralstonia pickettii 12J]
          Length = 518

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 167/490 (34%), Positives = 247/490 (50%), Gaps = 31/490 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V  VF+   +           + R+  FI AS+
Sbjct: 20  GLVWFRRDLRHFDHAALHYALRHC-REVYCVFVFDRDILDALLARGLQADRRIEFIRASI 78

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +++ +L + G           D     +     +  +  +F N   E +   RD+ + K
Sbjct: 79  EELRSALREAGGDLMVVH----DHPRHAIPEIARKLNIEAVFANHDEEPSAQARDEAVRK 134

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L  +      F D V+     ILN   + Y V+TP++ A +  L   DLR+ P      
Sbjct: 135 VLAQQPCAWFDFKDQVIFERDEILNGQGRPYGVFTPYKNAWLAALTPFDLRAYPTEPYLG 194

Query: 185 TGPVTPSNI----PRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                P  +    P      F      +   P G      +L +F ++++  Y  +RD P
Sbjct: 195 ALARPPEALAHPTPALEAMGFAHTNLSEIALPTGMSGGQALLDEF-EDRMDDYHARRDFP 253

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S R    R        +++   GA +WL+EL+WR+FY  ++  
Sbjct: 254 AVRGPSYLSTHLRFGTVSIRTLAARAHA----AMLRGSRGAATWLSELVWRDFYFMILHH 309

Query: 298 YPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P +  G  F P  ++I W   +      +AWK   TG+P++DAAM Q+   G+MHNRLR
Sbjct: 310 RPDLADGAAFHPEFDRIRWVDGDTGDARFEAWKGAQTGYPLVDAAMLQIFQSGYMHNRLR 369

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL+KDL +DWR GE+YF   L D D ++NNGGWQWAAS+G D+ P+FRIFNP  Q
Sbjct: 370 MVAASFLIKDLGIDWRRGEQYFADVLNDFDFSANNGGWQWAASSGCDAQPWFRIFNPVTQ 429

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
            ++FDPQG FIR +LP+L  +P +YIHAP +            L   YP PI+DH  A  
Sbjct: 430 SEKFDPQGRFIRKYLPQLAKLPDKYIHAPWTAPANVLKEAGVVLGETYPRPIIDHAGARA 489

Query: 469 HTLNQYYAAK 478
            TL++Y   K
Sbjct: 490 ATLDRYAVTK 499


>gi|242208527|ref|XP_002470114.1| hypothetical DNA photolyase [Postia placenta Mad-698-R]
 gi|220730866|gb|EED84717.1| hypothetical DNA photolyase [Postia placenta Mad-698-R]
          Length = 543

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 180/524 (34%), Positives = 263/524 (50%), Gaps = 62/524 (11%)

Query: 11  LVWLR-NDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + W+R  DLR  DN+AL  A   +      +IA+F+ +P  +  H  SAR+  F   +L 
Sbjct: 18  VYWMRIEDLRTRDNRALAQASEQAREDHVPLIALFVLSPHDYIAHDRSARRIDFTLRNLR 77

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ SL++  +       +   +   ++ S   +   T+L+ N +YE++E+RRD  + + 
Sbjct: 78  CIRSSLAELHVPLYTTTHTPRTNIPSYVLSLLNEWNATRLYANIEYEVDELRRDIKVCEL 137

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVP 180
            +  +V C    D  ++PPG +L    + Y VY+PF +A   +L         L   P P
Sbjct: 138 AREKKVACTFVHDKCIIPPGKVLTKGEKGYTVYSPFLRAWTPHLTPSKGEADPLACAPSP 197

Query: 181 AIRLTGPVTPSNIPRFFD---------------YPFQAIDPMFPIGEQNALHILRKFC-- 223
           A             + FD                    I   +P GE  A  IL +F   
Sbjct: 198 AANSPSIHNHPVYGKLFDQSVPDEVDGFSLQDTEERDRIRTCWPAGEDAAKEILERFVNT 257

Query: 224 --------------------------KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
                                       ++  Y + RD      TS+LSPYL+ GV+S R
Sbjct: 258 MARSEQMGAVNPLSNGAKVPTKSPTKDSRIGKYKDARDKVDADTTSRLSPYLAAGVISAR 317

Query: 258 QCWNRLKEEFVDLLIK----PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           +C     +       K     ++G+  W+ E+ WR+FY H++A +P V MG+PF      
Sbjct: 318 ECIRATMQLSASKAPKVDVSRETGSGRWVQEIAWRDFYTHVVALFPRVSMGRPFQEKLSS 377

Query: 314 IEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
           I+W  D+    LQAWK G TG PI+DA MRQ   +GWMHNR+RM+ A +LVKDL++DWR+
Sbjct: 378 IKWEADTAGDHLQAWKDGRTGVPIVDAGMRQALAMGWMHNRVRMVAAMYLVKDLMIDWRL 437

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           GE++FM  L+DGDLASNNGGWQW+ASTG D  PYFRIFNP  Q ++ DP G +IR+++PE
Sbjct: 438 GEKHFMETLIDGDLASNNGGWQWSASTGVDPAPYFRIFNPYTQSQKADPTGDYIRYFVPE 497

Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           L NV    IH P   L      L YP P+V H +A    + +Y 
Sbjct: 498 LANVRGADIHNPPPALAD---KLGYPRPLVKHDEARQRAIRRYK 538


>gi|116671293|ref|YP_832226.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24]
 gi|116611402|gb|ABK04126.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24]
          Length = 474

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 159/484 (32%), Positives = 238/484 (49%), Gaps = 24/484 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +VWLR+DLR+ DN AL  A       +  V+I   E      +      +++ SL+
Sbjct: 1   MPSTIVWLRDDLRLDDNPALADAAAMGH-PLTVVYILDEESPGVRPLGGAAKWWLHHSLV 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L   G      + S        +     +   T L +NR+Y   E   D  ++  
Sbjct: 60  SLAGGLEAAGSRLVLRRGSAAG----IIQELAAETGATHLRWNRRYGGPERSIDAGVKAW 115

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSLPVPA 181
              + +   SF  S++  P ++   A   YKV+TPF +A ++     +      +LP PA
Sbjct: 116 AGEQGLDAASFQASLMFEPWTVRTGAGGPYKVFTPFWRACLESGEPRIPSDGPGTLPHPA 175

Query: 182 IRLTG-PVTPSNIPRFFDYP-----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
               G P    ++  +   P        +   +  GE  A   L+ F    V  Y   RD
Sbjct: 176 GHGDGGPPQSDDLDSWALLPRTPDWSAGLAEQWTPGEAGAHSRLKDFLDGPVEEYGTGRD 235

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P ++GTS+LSP+L  G +SP + W+ L+E F     +  +    + +EL WREF   L+
Sbjct: 236 RPGVEGTSRLSPHLRFGEISPFRIWHALRERFPR---QAPADVGIFRSELGWREFCWQLL 292

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              P +   + + P  ++ EW   S   L+AW+QG TG+P++DA MRQL   GWMHNR+R
Sbjct: 293 YENPELA-SRNYRPDFDRFEWQTPSDAELEAWQQGRTGYPLVDAGMRQLWQTGWMHNRVR 351

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M  ASFLVK+LL DWR+GE +F   L+D D ASN   WQW A +G D+ PYFRIFNP  Q
Sbjct: 352 MAAASFLVKNLLADWRLGEAWFWDTLVDADSASNPANWQWVAGSGADASPYFRIFNPVTQ 411

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            K+FD  G ++R ++PE+ N+  + IH P       +L+  YP P+V   ++    L  Y
Sbjct: 412 SKKFDAAGRYLREFIPEIANLSEKEIHEPWK---APELAAGYPEPLVGLPESRERALETY 468

Query: 475 YAAK 478
              K
Sbjct: 469 QKLK 472


>gi|312889452|ref|ZP_07749004.1| Deoxyribodipyrimidine photo-lyase [Mucilaginibacter paludis DSM
           18603]
 gi|311298004|gb|EFQ75121.1| Deoxyribodipyrimidine photo-lyase [Mucilaginibacter paludis DSM
           18603]
          Length = 437

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 150/479 (31%), Positives = 225/479 (46%), Gaps = 46/479 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYAS 64
             +V + W R DLR+ DN  LY A       V+ +FI   E   Q       +  FIY +
Sbjct: 2   KQTVSIFWFRRDLRLDDNAGLYYALK-GGHPVLPLFIFDTEILNQLEDREDARVTFIYQT 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  +   L ++       + ++     +  +    +  +  ++ N  YE     RD  L+
Sbjct: 61  IEALNNELREQQSSSILIKYNSTG---QAWNEVLAEYDIAAVYTNHDYEPYARHRDAELK 117

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-I 182
           +   Q  +   ++ D V+   G ++    + Y V+TP+++     L    L+  P    +
Sbjct: 118 ELFTQKNIEFYTYKDQVIFEKGEVVKDDQKPYTVFTPYKRKWYDKLKPFYLKPYPTRKYL 177

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                 +P  +P      F      FP           K  K  +  Y EQRD PAI+GT
Sbjct: 178 DNISKTSPFQLPTLKSMGFAESKTHFP----------DKQYKTIIAGYHEQRDFPAIKGT 227

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S +  +L  G +S RQ                     +WLNELIWREFY  ++  +P   
Sbjct: 228 SHIGLHLRFGTVSIRQLATDAYGAEEK----------TWLNELIWREFYMMILYHFPQTA 277

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               F P  ++I W  +    +AW +G TG+P++DA MR+LN  G+MHNR+RM+ ASFL 
Sbjct: 278 DH-AFKPEYDRIRWRNNETEFKAWCEGKTGYPLVDAGMRELNATGYMHNRVRMVVASFLS 336

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE YF  +LLD ++ASN GGWQWAA +G D+ PYFR+FNP +Q K+FDP+ 
Sbjct: 337 KHLLIDWRWGERYFARKLLDYEMASNVGGWQWAAGSGTDAAPYFRVFNPELQLKKFDPKL 396

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            +++ W+PE  +                     YP PIVDH  A    L  +  A  +S
Sbjct: 397 QYVKKWVPEYADFSK------------------YPEPIVDHAFARERCLKVFKEALSKS 437


>gi|325914014|ref|ZP_08176370.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539783|gb|EGD11423.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 472

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 225/480 (46%), Gaps = 17/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + SL 
Sbjct: 1   MSYAIVWFRRDLRLQDNPALRAALDAGHDP-IPLYIDAPHEEGEWAPGAASRSWRHRSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L   G            DS + LD    Q     +++NR+YE     RD  +++ 
Sbjct: 60  ALDDTLRALGSGLVIR----AGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRN 115

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ R I  +S + ++L  P  +       YKV+TPF +  +  L        P     L 
Sbjct: 116 LRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPRSLPPLP 175

Query: 186 GPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +    +      P    D      +  GE  A  +L  F    +  Y E RD P   G
Sbjct: 176 ATLETVALESLALLPRLDWDHGFWEHWQPGEAGAHEMLEIFIDGALDGYRENRDRPDRVG 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  + L+        +  +    ++ +L WR+F  HL+  +P  
Sbjct: 236 TSQLSPHLHFGEIAPWRIASTLE---AQRNARNAAEIDGYIRQLGWRDFSYHLLHHFPD- 291

Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              +   P  E  +W K D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI AS 
Sbjct: 292 TTNQNLNPRFEGFDWAKADPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASL 351

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L V W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDP
Sbjct: 352 LCKHLRVHWLDGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411

Query: 421 QGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
           Q T+I  W+PEL  +  +   AP    L    L+  YP  PI+   +     L  Y   +
Sbjct: 412 QATYITRWVPELGKLAVKERFAPWLHPLSLARLAPEYPRSPIIGLAEGRDAALAAYAKTR 471


>gi|21910695|ref|NP_664963.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           MGAS315]
 gi|28895615|ref|NP_801965.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1]
 gi|21904898|gb|AAM79766.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           MGAS315]
 gi|28810864|dbj|BAC63798.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           SSI-1]
          Length = 469

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/480 (36%), Positives = 247/480 (51%), Gaps = 22/480 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNNEQLNLLH-SRNQSSFIT-SVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K L  +GI              + L         T +++N         RD+   +  +
Sbjct: 59  RKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQKAAQFFK 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   ++ D  L     I+N + Q YKV+TP+ +       +  ++ + +   R    
Sbjct: 116 KNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELSQGRWLNL 174

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            TP ++ R  +  F+            A   L +F ++++  Y   RD PA  GTS+LSP
Sbjct: 175 ETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP 233

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L IG +  R  ++ +++           G  ++L EL WR+FY  +   YP     +P 
Sbjct: 234 FLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPDQ-KTQPI 286

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASFL KDLL 
Sbjct: 287 QKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLC 346

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP+G FI+ 
Sbjct: 347 DWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKA 406

Query: 428 WLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +LP+L +VP +Y+H P              +  +YP PIVDH K     + +Y  AK+++
Sbjct: 407 YLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKA 466


>gi|88800847|ref|ZP_01116402.1| putative deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
 gi|88776420|gb|EAR07640.1| putative deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
          Length = 465

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/472 (37%), Positives = 260/472 (55%), Gaps = 17/472 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             LVW RNDLR++D++AL+ A + +      V A+F  +  QWR HG    +    +++L
Sbjct: 2   TQLVWFRNDLRVSDHEALFQALNRAKQQQTPVRALFFWSDAQWRSHGAGDAKIAATFSAL 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + L++ GI       S + +  E + +YC   ++T + Y+ +   NE+RRD  + +
Sbjct: 62  QALHQKLAKLGIPLDVLSVSWWTECAEQMVNYCQSHQITAIHYHTEPGWNELRRDDRVAQ 121

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +L   V    + D   + P   L    Q+YKV+T ++K+L++      L + P    R  
Sbjct: 122 QLSKSVELHRYHDLYFIDPAHHLTQQGQVYKVFTAYKKSLLRQFSIDHLATFP---PRKA 178

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           GP    +     D P        P+ E  AL  L  FC+E V  Y ++RD PA  GTSQL
Sbjct: 179 GPALKVSPLAMKDLPNWQNPLQLPVTEDQALTRLDAFCEE-VRDYADRRDFPADNGTSQL 237

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L++G  S RQ  + L    + L       + ++ +E+IWR+FY++L+   P +C+G+
Sbjct: 238 SAALALGCTSSRQVAHTLHRHHISL------ASDTFFSEIIWRDFYKYLLFHTPRLCLGE 291

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P+    +   W K+   L+ W++G TG PI+DAAMRQL   GWMHNRLRM+T  +LVK L
Sbjct: 292 PYNEKWDAFPWQKNETWLERWREGKTGVPIVDAAMRQLRETGWMHNRLRMVTGMYLVKIL 351

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
             DWR GE +F   L D D A+NNGGWQW ASTG D+VPYFRIFNP  Q KRFDP G FI
Sbjct: 352 QQDWRQGEAWFAEHLADFDFAANNGGWQWVASTGVDAVPYFRIFNPYQQSKRFDPNGQFI 411

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             ++ ELN+V    +H     L  +     YP P+ D+ KA   TL+++ A 
Sbjct: 412 LTFVTELNDVKPALLHDHKRALSVSS----YPKPLTDYSKARQDTLDKFKAL 459


>gi|139473471|ref|YP_001128187.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes str.
           Manfredo]
 gi|134271718|emb|CAM29951.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           str. Manfredo]
          Length = 469

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 172/480 (35%), Positives = 240/480 (50%), Gaps = 22/480 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K L  +GI              + L         T +++N         RD+   +  +
Sbjct: 59  RKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQKAAQFFK 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   ++ D  L     I+N + Q YKV+TP+ +       +  ++        L   
Sbjct: 116 KNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQGRWLNLE 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                +        +    +    E  A   L +F ++++  Y   RD PA  GTS+LSP
Sbjct: 176 TPDDVLRTVESIKDEKYQDVATFDE--ASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP 233

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L IG +  R  ++ +++           G  ++L EL WR+FY  +   YP     +P 
Sbjct: 234 FLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPDQ-KTQPI 286

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASFL KDLL 
Sbjct: 287 QKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLC 346

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  Q KRFDP+G FI+ 
Sbjct: 347 DWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQSKRFDPKGEFIKA 406

Query: 428 WLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +LP+L +VP +Y+H P              +  +YP PIVDH K     + +Y  AK+++
Sbjct: 407 YLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKA 466


>gi|220905687|ref|YP_002480998.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
 gi|219862298|gb|ACL42637.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
          Length = 475

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/478 (35%), Positives = 240/478 (50%), Gaps = 17/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN  L AA     AKV+ VF   P    +  ++  +  ++  SL  +Q+
Sbjct: 6   LFWHRRDLRIADNVGL-AAARQRTAKVVGVFCLDPNLLERDDVAPARVAYMIGSLQHLQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
              Q G                 +       +   +F+N   E     RD+ ++  L+  
Sbjct: 65  QYVQSGSQLLILH----QQPTIAIPQLATALQAKAVFWNWDVEPYSQERDRTVQTALETV 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL------PVPAIR 183
            +  ++F D +L PP +I   + + Y V++PF +   +   +  + SL           +
Sbjct: 121 GIEVQNFWDQLLHPPAAIKTGSGEAYTVFSPFWRNWSRQPKEPPVPSLATATGLTPTEQQ 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               V    +P   D  F    P+    GE  A   L +FC+  +Y Y ++R+ PA  GT
Sbjct: 181 AADQVGAIALPTAKDLGFIWDTPLPLEPGETAAQERLEQFCQRAIYAYQQERNFPATTGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPSV 301
           SQLS  L  GVL  R  W   +        +  +    +W  EL WREFY+H + ++P++
Sbjct: 241 SQLSAALKFGVLGIRTVWATTQSALESSRSQEAEDSIQTWQQELAWREFYQHALYWFPAL 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             G  +    +   W       QAW +G TG+PI+DAAMRQ+NTIGWMHNR RMI ASFL
Sbjct: 301 AEG-AYRQPFKTFPWQNRPDYFQAWCEGRTGYPIVDAAMRQMNTIGWMHNRCRMIVASFL 359

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDLL+D R GE+YFM +L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q ++FDP+
Sbjct: 360 TKDLLIDPRWGEKYFMQKLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQSQKFDPE 418

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
             +IR WLPEL +V T  +      L++ D    YPL IVDH          Y   K+
Sbjct: 419 ADYIREWLPELRSVETADLVTGKISLEERDR-CGYPLAIVDHHHQQRLFKQLYEQQKR 475


>gi|134302129|ref|YP_001122098.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049906|gb|ABO46977.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 464

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/483 (32%), Positives = 246/483 (50%), Gaps = 30/483 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  + + W R DLR+ DN ALY      +   I +FI    Q     I +    +++ SL
Sbjct: 2   SKKIAIHWFRQDLRLADNPALYQVSQADET--ITIFILDKNQ----DIGSASKLWLHHSL 55

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL  K     ++      + +E +     +  +T  ++NR Y+   + RD  +++
Sbjct: 56  NSLNSSLDNK---LNFYSG----NPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQ 108

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IR 183
            LQ H++   SF+ S+L+ P          YKVYTPF K LI+        + P  + +R
Sbjct: 109 FLQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLR 168

Query: 184 LTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                   +  +  +  + +Q I   + IGE  +  IL +F   KV  Y   RD  +   
Sbjct: 169 KLNNSENLDSLKLIEPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDS 228

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSPYL  G +SP Q +N ++      L    +    ++ EL+WR+F  + + +YP +
Sbjct: 229 TSKLSPYLHFGEISPNQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL 283

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+MHNR+RMI ASFL
Sbjct: 284 -HNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVRMIVASFL 342

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q ++F+  
Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402

Query: 422 GTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSL--NYPLPIVDHKKACHHTLNQYY 475
             +IR ++PEL  +P + I  P       L +  ++L  NYP PIVD KK+    L  + 
Sbjct: 403 -EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQLHN 461

Query: 476 AAK 478
             K
Sbjct: 462 QIK 464


>gi|261855425|ref|YP_003262708.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
           c2]
 gi|261835894|gb|ACX95661.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
           c2]
          Length = 490

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/494 (31%), Positives = 228/494 (46%), Gaps = 29/494 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNS--DAKVIAVFIA--------TPEQWRQHGISARQS 58
             +VW R DLR+ D+ AL AA         +I V+I         T +  +     A   
Sbjct: 2   TTIVWFRQDLRLGDHPALDAAIQTGADQGHIIPVYIHPGYAPSDQTADATKPLYEGAAAR 61

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            + + SL  + + L+  G      Q     + +  L     + +  ++ +NR+ E     
Sbjct: 62  WWRHHSLRSLAERLASCGSRLIIRQG----EPLAELQRLIHETKANRVVWNRRMEPAARA 117

Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            D  ++  L+   I   SF+ + L  P +I N   + +KV+TP+ KA++   +       
Sbjct: 118 EDTRIKAALRAEGINVDSFNGNYLHEPWTIQNKQGKPFKVFTPYWKAVVAAGLDLPTYPE 177

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQ 233
           P     +   +    I      P  A D      +  GE  A      F    +  Y E 
Sbjct: 178 PDNLPTVPRALNSLAIDELELLPAIAWDKDFYNHWQPGEPGAWSRFEDFLP-LIDEYAEA 236

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           R+     G S+LS +L  G +SPRQ    L +    +L     G   ++ EL WREF  +
Sbjct: 237 RNHLIGTGVSKLSAHLHFGEISPRQIVRYLLDTRGSVLEP--RGIEHFVRELGWREFGAY 294

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   YP   +  P        +W      L+AW++G TG P++DAAMR L   GWMHNR 
Sbjct: 295 LAYHYPQ-TVDAPLDARFLNFKWRDAPDDLRAWQRGQTGIPVVDAAMRCLWQTGWMHNRA 353

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL K+LL+DWR G  +FM  L+D D  SN  GWQW A TG D+ PYFRIFNP +
Sbjct: 354 RMIVASFLTKNLLIDWRCGAAWFMDTLVDADEPSNTAGWQWTAGTGADAAPYFRIFNPVL 413

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
           Q ++FDP GTFIR W+PEL  +  +Y+ AP +  +         L   YP PI D K + 
Sbjct: 414 QAEKFDPDGTFIRRWVPELARLENKYLFAPWTASETALAQAGIVLGKTYPEPISDLKVSR 473

Query: 468 HHTLNQYYAAKKQS 481
              L  +   K+ +
Sbjct: 474 QRALVHFDQIKQNT 487


>gi|188992258|ref|YP_001904268.1| Putative photolyase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734018|emb|CAP52224.1| Putative photolyase [Xanthomonas campestris pv. campestris]
          Length = 520

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 228/480 (47%), Gaps = 17/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  Q    A    + + SL 
Sbjct: 49  MSYAIVWFRRDLRLEDNPALRAALDAGHDP-IPLYIDAPHEEGQWAPGAASRAWRHRSLA 107

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL  +G      Q     DS + LD+   Q     +++NR+YE     RD  +++ 
Sbjct: 108 ALDASLRARGSALLIRQG----DSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRS 163

Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ R    +S + ++L  P ++       YKV+TPF +  +  L   D    P     L 
Sbjct: 164 LRERGLEVQSCNAALLFEPWTLATQQGGPYKVFTPFWRNALTQLRLPDAMPAPRSLPPLP 223

Query: 186 GPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +   ++      P  A D      +  GE  A  +L  F    +  Y E RD P   G
Sbjct: 224 ASLDGVHVDALNLLPTPAWDQGFWEHWQPGEAGAHEMLEIFVDGALSGYRENRDRPDRVG 283

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  + L+        +  +    ++ +L WR+F  HL+  +P  
Sbjct: 284 TSQLSPHLHFGEIAPWRIASTLE---AQRSARNGADIDGYIRQLGWRDFAYHLLHHFPDT 340

Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  P     +W   D   L AW++G TG PI+DA +RQL   GWMHNR+RMI AS 
Sbjct: 341 TTQN-LNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMIVASL 399

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L V W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDP
Sbjct: 400 LCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 459

Query: 421 QGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYP-LPIVDHKKACHHTLNQYYAAK 478
           Q T+I  W+PEL  +P +   AP    L    L+  YP  PI+   +     L  Y   +
Sbjct: 460 QATYITRWIPELAALPVKERFAPWLHPLSLARLAPTYPRAPIIGLAEGRDAALAAYAGTR 519


>gi|8101444|gb|AAF72556.1|AF130425_1 cryptochrome 2 [Solanum lycopersicum]
 gi|8101446|gb|AAF72557.1|AF130426_1 cryptochrome 2 [Solanum lycopersicum]
          Length = 635

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 140/491 (28%), Positives = 229/491 (46%), Gaps = 29/491 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA  N    V+ VFI  P++  Q         ++  SL+ ++
Sbjct: 7   TIVWFRRDLRIEDNPALAAAARNG--SVLPVFIWCPKEEGQFYPGRVSRWWLKQSLIHLK 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +      ++  L         TK+ YN  Y+   + RD  ++++L  
Sbjct: 65  QSLKSLGAELVLMKA---QSTLSALTECVDAVGATKVVYNHLYDPVSLVRDHNIKQKLGD 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  +S++  +L  P  + +      KV+T F     ++L   +     +P  RLT   
Sbjct: 122 LGISVQSYNGDLLNEPWEVYDDDG---KVFTTFDAYWEKSLSIQNEPVSQLPPWRLTQAA 178

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               +    +   +          +   +  G  NA   L +F +  +  Y + R     
Sbjct: 179 GSVKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVESNLLAYSKDRLRVGG 238

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G +S R+ +N ++ +      +     K  A  +L  +  RE+ R++ 
Sbjct: 239 NSTSLLSPYLHFGEVSVRKVFNSVRLKQILWTKEGNSVGKDSATIYLRAIGLREYSRYIC 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       WN D    +AW+QG TG+P++DA MR+L   GW+HN++R+
Sbjct: 299 FNFP-FTHERSLLNNLRFFPWNADQAHFKAWRQGRTGYPLVDAGMRELWATGWVHNKIRV 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +QG
Sbjct: 358 IVSSFFVKFLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHELERLDNPEVQG 417

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
             +DP+G ++RHWLPEL  +P ++IH P             +L +NYP PI+D   A   
Sbjct: 418 FNYDPEGEYVRHWLPELARMPAEWIHHPWDAPLNVLKAAGVELGMNYPNPIIDVDVARDR 477

Query: 470 TLNQYYAAKKQ 480
            +      +++
Sbjct: 478 LMQAIIIMREK 488


>gi|289433865|ref|YP_003463737.1| hypothetical protein lse_0498 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170109|emb|CBH26649.1| phrB [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 471

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/479 (34%), Positives = 246/479 (51%), Gaps = 25/479 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC + D  ++ +F   PEQ+      +      ++S+   
Sbjct: 2   TSVMWFRRDLRLNDNKALYQACRDKDDLIL-LFQVNPEQFIN---GSPSHQAFFSSVAYF 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRRD-KLLEKR 126
           ++ + +       H    F + +  L+    +     K+++NR       +RD   L+  
Sbjct: 58  KQKVDE-----TAHLQIMFGEPMGLLEKLKEKIPAWDKVYFNRDETGYGAKRDEAALQFF 112

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +  +   ++ D+ L     +   A   YKV+TP+ K   + + +  L     P      
Sbjct: 113 AKEEIEVFAYHDAYLHHADDVKKSATDFYKVFTPYYKKWREEIKERPLPISINPEKVNNT 172

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            + P +  +F +   +        +GE  A   L  F KE +  Y E RD P +  TS L
Sbjct: 173 ILFPEDEKQFVEMTRELPPLDATKLGELAAQSHLNHFVKENLADYNEARDFPDLDKTSHL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G +S R  W  ++E       +  +G  ++  EL WR+FY  +   +P+    +
Sbjct: 233 SRFLRTGEVSIRTVWQAVQEA------EHTNGRATFEKELCWRDFYNMIYVSFPNQ-KNE 285

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                   IEW  +    Q W+QG TGFP++DAAMRQL   GWMHNRLRMITASFL KDL
Sbjct: 286 AIQANYRFIEWENNRTNFQKWQQGATGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDL 345

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP G FI
Sbjct: 346 LIDWRWGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPSGNFI 405

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++ EL  +P ++IH P    ++        +  +YP PIVDHK+     + +Y  +K
Sbjct: 406 RKYVQELAGLPDKFIHQPEKMTNQEQEKFHLIIGEDYPFPIVDHKERRKLAIARYEFSK 464


>gi|118594490|ref|ZP_01551837.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
           HTCC2181]
 gi|118440268|gb|EAV46895.1| deoxyribodipyrimidine photo-lyase [Methylophilales bacterium
           HTCC2181]
          Length = 465

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/477 (35%), Positives = 246/477 (51%), Gaps = 25/477 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQK 70
           +W R DLR+ DN AL+ A   SD  V  VFI              ++  FI+ +L +++ 
Sbjct: 1   MWFRRDLRLHDNHALHHALSQSD-NVYCVFIFDKNILNDLKSKEDQRIEFIWEALSEMKA 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL+               D I  +     +     LF+N+ YE    +RD  + + +Q  
Sbjct: 60  SLNSLSSDITVIHG----DPIHAIPLLLKKYDCEALFFNKDYESYANKRDMRIMEHIQQS 115

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPV 188
                 F D+VL     IL+ A + Y V++P++   +  L Q  +         R    +
Sbjct: 116 SADAYQFKDTVLFEEKEILSQADKPYTVFSPYKNNHLAKLYQKGITQYDCENNKRSFAKI 175

Query: 189 TPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               +       F   +      P G      +L  F ++++  Y  +RD P  +G S L
Sbjct: 176 KIEKLLSLDSLGFTKTNLSKLAIPTGSSGGRSLLLDF-EKRIDQYKLKRDYPGKKGVSYL 234

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +   G +S R+       + +  + K   G+  WLNELIWR+FY  +++ +P +  GK
Sbjct: 235 SVHNRFGTISIRE-------QALIAINKQSEGSLVWLNELIWRDFYFQILSNFPHINDGK 287

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P   ++ +  +    +AWK G TGFPIIDAAM QLN  G+MHNRLRMI ASFLVKDL
Sbjct: 288 SFKPQFNQLRFENNVTFFEAWKNGRTGFPIIDAAMHQLNKTGFMHNRLRMIVASFLVKDL 347

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +L+D D ++NNGGWQWAASTG D+ P+FRIFNP +Q ++FDP+G FI
Sbjct: 348 LIDWRWGESYFAEKLIDFDFSANNGGWQWAASTGCDAQPWFRIFNPLLQSEKFDPEGLFI 407

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476
           + +LP+L  +  + IH PH + +K+       L  +YP PI+DH       L+ Y A
Sbjct: 408 KKYLPQLTPLSAKEIHRPHFFYEKDPDTFKVKLGEDYPFPIIDHAIQRQKALSMYQA 464


>gi|110668379|ref|YP_658190.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
 gi|109626126|emb|CAJ52578.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
          Length = 478

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/486 (33%), Positives = 232/486 (47%), Gaps = 21/486 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAK-------VIAVFIATPEQWRQHGISARQSHFI 61
           + L W R+DLR  DN+ L  A              +I VFI              +  ++
Sbjct: 1   MQLYWHRSDLRGVDNRGLAEAASAVSPDLLPDADGIIPVFIFDDNALE--HDGNARVQYM 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+ +++     +       +     D +  L        V ++ +NR+Y      RD+
Sbjct: 59  LESIAELRSWYRDRDSDLLIARG----DPVSILPELASTHDVDRVVWNREYSGFAQSRDQ 114

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +   L +H +   S  DS+   PGSI  +  + Y VYT F K        A + + P  
Sbjct: 115 QVADALTEHDIAHCSVRDSIFFEPGSITTNKGEPYSVYTYFWKKWRDREKNAPIDA-PDA 173

Query: 181 AIRLTGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            + +       ++P      F+     + P G   A + L  FC + +Y Y + RD P+ 
Sbjct: 174 DMFVPDEGIGDSLPTIDSLGFEEPTADIQPAGTNAARNRLSDFCADGIYRYDDDRDYPSR 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNR--LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
              S+LS  LS G +  R          E   +          + ++L WREFY H++ F
Sbjct: 234 DAVSRLSADLSFGTIGVRDVHAATVAAAEVDGITDAEAESVEEFQSQLAWREFYTHVLYF 293

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P V     +  +   I+W  D   LQAWK G TG+PI+DA MRQL +  +MHNRLRMI 
Sbjct: 294 NPEVVTEN-YKSYENGIQWRDDPAALQAWKDGETGYPIVDAGMRQLKSEAYMHNRLRMIV 352

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL KDLL+DWR G  +F   L D ++A+NNGGWQWAASTG D+ PYFRIFNP  QG+R
Sbjct: 353 ASFLTKDLLIDWREGYGHFRQYLADHNIANNNGGWQWAASTGTDAQPYFRIFNPMTQGER 412

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +DP   +I+ ++PEL  VP   IH  H  S  ++  L  +YP PIVDH K     L  + 
Sbjct: 413 YDPDAEYIKQYVPELREVPADTIHEWHELSPTERARLDTDYPAPIVDHSKQREKALEMFE 472

Query: 476 AAKKQS 481
            A+  +
Sbjct: 473 TARGDA 478


>gi|315301776|ref|ZP_07872823.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596]
 gi|313629850|gb|EFR97936.1| deoxyribodipyrimidine photo-lyase [Listeria ivanovii FSL F6-596]
          Length = 471

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/480 (35%), Positives = 255/480 (53%), Gaps = 27/480 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++DN ALY AC ++D ++I +F   PEQ+     S       ++S+   
Sbjct: 2   TSVMWFRRDLRLSDNTALYQACKDND-ELILLFQVNPEQFITKSPS---HQAFFSSVAYF 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDK-LLEKR 126
           ++ + +       H    F + I  L+    +     K+++NR       +RD+  L   
Sbjct: 58  KQQVDK-----IAHLQIMFGEPINLLEKLKEKVPSWDKVYFNRDETGYGAKRDETALRFF 112

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            Q  +   +FDD+ L    ++     + YK++TP+ K   + + +  ++    PA     
Sbjct: 113 AQAGMTVFAFDDAYLHHADAVKKSTSEFYKIFTPYYKKWREEIKEFPIQVTVNPAKIQKA 172

Query: 187 PVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            + P +  +F     QA+  +    +GE  A + L  F KE +  Y E RD P +  TS 
Sbjct: 173 ILFPEDEEQFVQM-AQALPMLAENMLGETVANNQLNHFVKENLAQYKEVRDFPDLDKTSH 231

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS +L  G LS R  W  +++       +P  G  ++  EL WR+FY  +   +P+    
Sbjct: 232 LSRFLRTGELSIRTVWQAVQKA------EPTDGRTTFEKELCWRDFYNMIYVSFPNQ-KN 284

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +        IEW  + +  Q W+QG TG+P++DAAMRQL   GWMHNRLRMITASFL KD
Sbjct: 285 EAIQTNYRFIEWENNRNYFQKWQQGATGYPLVDAAMRQLKETGWMHNRLRMITASFLTKD 344

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNPT Q ++FD  G F
Sbjct: 345 LLIDWRWGEKYFQQMLVDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDSLGNF 404

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR ++ EL N+P ++IH P     K        L  +YP PI++H++     + +Y  +K
Sbjct: 405 IRKYVQELANLPDKFIHQPEKMTAKEQTEFKVILGEDYPFPIINHQERRKEAIARYEFSK 464


>gi|94988861|ref|YP_596962.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
 gi|94992751|ref|YP_600850.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
 gi|94542369|gb|ABF32418.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
 gi|94546259|gb|ABF36306.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
          Length = 480

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 173/487 (35%), Positives = 249/487 (51%), Gaps = 22/487 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +   ++ V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI
Sbjct: 6   RRKGSVMVSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFI 63

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+L  +K L  +GI              + L         T +++N         RD+
Sbjct: 64  T-SVLAFRKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQ 119

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
              +  +   I   ++ D  L     I+N + Q YKV+TP+ +       +  ++ + + 
Sbjct: 120 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELS 178

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             R     TP ++ R  +  F+            A   L +F ++++  Y   RD PA  
Sbjct: 179 QGRWLNLETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQL 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS+LSP+L IG +  R  ++ +++           G  ++L EL WR+FY  +   YP 
Sbjct: 238 GTSRLSPFLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPD 291

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASF
Sbjct: 292 Q-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASF 350

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDLL DWR+GE++F  QL+D D ASN GGWQWAASTG D+VPYFR+FNP  Q KRFDP
Sbjct: 351 LTKDLLCDWRLGEQHFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRVFNPVTQSKRFDP 410

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474
           +G FI+ +LP+L +VP +Y+H P              +  +YP PIVDH K     + +Y
Sbjct: 411 KGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKY 470

Query: 475 YAAKKQS 481
             AK+++
Sbjct: 471 EWAKEKA 477


>gi|294654321|ref|XP_456362.2| DEHA2A00594p [Debaryomyces hansenii CBS767]
 gi|199428788|emb|CAG84307.2| DEHA2A00594p [Debaryomyces hansenii]
          Length = 555

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/485 (34%), Positives = 241/485 (49%), Gaps = 20/485 (4%)

Query: 14  LRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
              D R  DNK L  A   +      +I   I   E++  H +S  +  ++  SL  ++K
Sbjct: 70  FLRDFRTIDNKGLSIASELATTTKTPLITFHIFCLEEFDAHSVSPFKLEYMLGSLDVLKK 129

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRLQH 129
            L +  I     Q     D    +  +  Q   + +F N +YE++E+R   KL+   L  
Sbjct: 130 DLREMNIPLVSLQVEKRKDVPTKIAEFLEQNNTSHVFCNMEYEVDELRLLSKLVCFLLDK 189

Query: 130 RVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            +      DS ++ PG +   +    Y V+TP+ KA    L   D   +  P        
Sbjct: 190 HISFNPVHDSCIVKPGELKTKSKGTQYAVFTPWYKAWCNYLKIEDAPFMEYPRPHANESF 249

Query: 189 TPSNIPRFFDYPF------------QAIDPMFPIGEQNALHILRKFCK-EKVYYYVEQRD 235
           +  N     + P             +  D  +  GE  A   L  F + +K   Y E R+
Sbjct: 250 SDPNKLFDSEIPQVPESKRLTHDQQKEFDTCWKCGEHEAWSALSVFLESDKFKKYDESRN 309

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
             + +  S++S  +S G++S R     + E      I        W+ ++ WR+FYRH++
Sbjct: 310 EISEESVSRMSCPISSGIISTRSIIRYILENKFVKKIDSGEQGTGWIRQIAWRDFYRHIL 369

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P VCM KPF+   + + W  +S     W QG TGFPI+DAAMRQLN  G++HNR RM
Sbjct: 370 CNWPYVCMFKPFLLEYDDLNWEYNSDHFYKWCQGKTGFPIVDAAMRQLNQTGYLHNRCRM 429

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL K LL+DW+ GE YFM  L+DGD ASNNGGW +++STG D  PYFRIFNP +Q 
Sbjct: 430 IVASFLSKHLLIDWKYGEYYFMEHLIDGDFASNNGGWGFSSSTGVDPQPYFRIFNPWLQS 489

Query: 416 KRFDPQGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQ 473
           +RFD +GT+IR W+PEL ++   + IH P+     +    N YP PIVDHK      LN+
Sbjct: 490 ERFDKKGTYIRTWVPELKDIQDEKGIHNPYEKGYGHIAEKNGYPKPIVDHKYCRERALNR 549

Query: 474 YYAAK 478
           +  AK
Sbjct: 550 FKDAK 554


>gi|224112573|ref|XP_002332746.1| predicted protein [Populus trichocarpa]
 gi|222833074|gb|EEE71551.1| predicted protein [Populus trichocarpa]
          Length = 646

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 138/484 (28%), Positives = 227/484 (46%), Gaps = 24/484 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL  
Sbjct: 4   SKTIVWFRRDLRIEDNPALAAAAR--DGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL   G      +  +   ++  L         T++ +N  Y+   + RD  ++++L
Sbjct: 62  LGQSLKSLGAELVLIKTHS---TVAALLDCIETIGATRVVFNHLYDPVSLVRDHNIKEKL 118

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I  +S++  +L  P  I +     +  +  +    +   ++      P   +   G
Sbjct: 119 VELGISVQSYNGDLLYEPWEIYDERGHAFTTFEAYWDRCLHMQMEPVSHLPPWRLVPAAG 178

Query: 187 PVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            V   ++      D   ++ + +    +  G  NA   L +F ++ +  YVE R      
Sbjct: 179 TVMKCSVEELGLEDEAEKSSNSLLGRGWSPGWSNADKALTEFAEQHLIDYVESRLKVGT- 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            TS LSPYL  G LS R+ +  ++ +      +  +  K     +L  +  RE+ R+L  
Sbjct: 238 STSLLSPYLHFGELSVRKVFQCVQLKQLLWAKEENLMGKESVTLFLRSIGLREYSRYLCF 297

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     +  +   +   WN +    +AW+QG TG+P++DA MR+L   GW+HN++R+I
Sbjct: 298 NFP-FTHERSLLRNLKYFPWNDNQVHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVI 356

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK LL+ WR G +YF   LLD DL S+  GWQ+ + +  D+    R+ NP IQG 
Sbjct: 357 VSSFAVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDAHELERLDNPEIQGS 416

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHT 470
           +FDP+G ++R WLPEL  +P ++IH P             +L +NYP PI+D   A    
Sbjct: 417 KFDPEGEYVRRWLPELARMPAEWIHHPWDASIAVLKAAGVELGINYPKPIIDIDLARERL 476

Query: 471 LNQY 474
           +   
Sbjct: 477 MEAI 480


>gi|302383034|ref|YP_003818857.1| deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193662|gb|ADL01234.1| Deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
           15264]
          Length = 490

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/471 (35%), Positives = 236/471 (50%), Gaps = 17/471 (3%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           KA    +  ++W R DLR+ DN AL  A H +   V+ V+I   E        A    ++
Sbjct: 4   KAQDGPAPVILWFRRDLRLADNPALNKA-HATGRPVVPVYIHD-EGTAVRPAGAASLWWL 61

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +  SL+++G      +     DS   L     Q     +F NR +E     RD 
Sbjct: 62  DKSLRALAGSLAERGATLILRRG----DSETELRRLIDQTGADTVFLNRLFEPEAWTRDA 117

Query: 122 LLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +   L+   V C+  + S+L  PGS+LN +   YKV+TPF KAL          + P  
Sbjct: 118 DIAHGLKTDGVECRGSNGSLLALPGSLLNGSGGPYKVFTPFMKALRAQAEPPAHTTGPRQ 177

Query: 181 AIRLTGPVTPS--NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                G  +            P  +    +  GE  A   L +F    +  Y   RD PA
Sbjct: 178 LGAAPGLESDDLDAWGLHPTRPDWSKGFDWTPGEDGATAALHRFVSGGLADYSNGRDRPA 237

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TS+LSP+L  G +SP + W   ++   D        A  ++ ELIWR+F  HL+  +
Sbjct: 238 EPATSRLSPHLHFGEISPWRAWIAARDA-ADGGKVTSGEADKFIAELIWRDFSAHLLHHF 296

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P++   K F P  + + W  D     AW +G TG+PI+DA MR+L   G MHNR+RMI A
Sbjct: 297 PTLP-DKAFRPEYDAMPWRDDEPGFLAWTRGMTGYPIVDAGMRELWATGVMHNRVRMIVA 355

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL+KDLL+DWR GE +F   L+D DLASN+  WQW A +G D+ PYFRIFNP  QG++F
Sbjct: 356 SFLIKDLLIDWRRGEAWFWDTLVDADLASNSQNWQWVAGSGADASPYFRIFNPVTQGQKF 415

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463
           D +  +++ W+PEL  VP ++IHAP +   +        L   YP PIVDH
Sbjct: 416 DAEARYVKRWIPELAPVPARWIHAPWNAPPEILRDCGIRLGTTYPRPIVDH 466


>gi|19746457|ref|NP_607593.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232]
 gi|306827047|ref|ZP_07460345.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
           10782]
 gi|19748660|gb|AAL98092.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           MGAS8232]
 gi|304430793|gb|EFM33804.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
           10782]
          Length = 469

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 175/480 (36%), Positives = 246/480 (51%), Gaps = 22/480 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL      S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAHVIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K L  +GI              + L         T +++N         RD+   +  +
Sbjct: 59  RKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQKAAQFFK 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   ++ D  L     I+N + Q YKV+TP+ +       +  ++ + +   R    
Sbjct: 116 KNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELSQGRWLNL 174

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            TP ++ R  +  F+            A   L +F ++++  Y   RD PA  GTS+LSP
Sbjct: 175 ETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP 233

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L IG +  R  ++ +++           G  ++L EL WR+FY  +   YP     +P 
Sbjct: 234 FLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPDQ-KTQPI 286

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASFL KDLL 
Sbjct: 287 QKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLC 346

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP+G FI+ 
Sbjct: 347 DWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKA 406

Query: 428 WLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +LP+L +VP +Y+H P              +  +YP PIVDH K     + +Y  AK+++
Sbjct: 407 YLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKA 466


>gi|94994739|ref|YP_602837.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
 gi|94548247|gb|ABF38293.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
          Length = 477

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 175/487 (35%), Positives = 249/487 (51%), Gaps = 22/487 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +   ++ V ++W R DLRI D KAL      S +  + VF    EQ      S  QS FI
Sbjct: 3   RRKGSVMVSVMWFRRDLRIDDQKALAHVIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFI 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+L  +K L  +GI              + L         T +++N         RD+
Sbjct: 61  T-SVLAFRKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQ 116

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
              +  +   I   ++ D  L     I+N + Q YKV+TP+ +       +  ++ + + 
Sbjct: 117 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELS 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             R     TP ++ R  +  F+            A   L +F ++++  Y   RD PA  
Sbjct: 176 QGRWLNLETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQL 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS+LSP+L IG +  R  ++ +++           G  ++L EL WR+FY  +   YP 
Sbjct: 235 GTSRLSPFLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPD 288

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASF
Sbjct: 289 Q-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASF 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDLL DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP
Sbjct: 348 LTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDP 407

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474
           +G FI+ +LP+L +VP +Y+H P              +  +YP PIVDH K     + +Y
Sbjct: 408 KGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKY 467

Query: 475 YAAKKQS 481
             AK+++
Sbjct: 468 EWAKEKA 474


>gi|302498692|ref|XP_003011343.1| hypothetical protein ARB_02402 [Arthroderma benhamiae CBS 112371]
 gi|291174893|gb|EFE30703.1| hypothetical protein ARB_02402 [Arthroderma benhamiae CBS 112371]
          Length = 565

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/486 (34%), Positives = 237/486 (48%), Gaps = 43/486 (8%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A     + +  +I ++I +PE    H  S  +   I  +L  
Sbjct: 100 VHWFKQDLRLQDNRSLHRAYNFARDHNIPLICLYIFSPEDLTAHLCSPPRVDLILRTLAT 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+K I                +   C     + LF N +YE++E+RR+  L +  
Sbjct: 160 LKSGLSKKDIPLYMESIKRRKRIPSRIVELCKTWGASHLFANIEYEVDELRREAKLTRLC 219

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRL 184
               +I  S DD+ ++ PG +     + Y VYTP+ ++ +  L Q    L  +  PA+  
Sbjct: 220 ATQGIIFDSEDDACVVAPGELSTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279

Query: 185 TGP------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                              N  +  +   +    M+P GEQ A   LR+F  EK   Y  
Sbjct: 280 GDARKHFKDLFDSAVPIAPNQMKLSEAEQERFKKMYPEGEQEATRRLREFLSEKGKQYHS 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD  + Q TS LSPY S G LS R        +   L+I   S                
Sbjct: 340 KRDFMSSQFTSVLSPYFSCGALSARTAPFIEAMKLCGLVITDDSS--------------- 384

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                     M K F P    +EW  DS    AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 385 ---------SMNKCFKPEFTDLEWEYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 435

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 436 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 495

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L
Sbjct: 496 RQSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAEEIAEKNGYPRPIVNHTESRERAL 555

Query: 472 NQYYAA 477
            +Y  A
Sbjct: 556 EKYKKA 561


>gi|71903837|ref|YP_280640.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
 gi|71802932|gb|AAX72285.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
          Length = 477

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 175/487 (35%), Positives = 249/487 (51%), Gaps = 22/487 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +   ++ V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI
Sbjct: 3   RRKGSVMVSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFI 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+L  +K L  + I              + L         T +++N         RD+
Sbjct: 61  T-SVLAFRKLLKCESIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQ 116

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
              +  +   I   ++ D  L     I+N + Q YKV+TP+ +       +  ++ + + 
Sbjct: 117 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELS 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             R     TP ++ R  +  F+            A   L +F ++++  Y   RD PA  
Sbjct: 176 QGRWLNLETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQL 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS+LSP+L IG +  R  ++ +++           G  ++L EL WR+FY  +   YP 
Sbjct: 235 GTSRLSPFLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPD 288

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASF
Sbjct: 289 Q-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASF 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDLL DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP
Sbjct: 348 LTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDP 407

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474
           +G FI+ +LP+L +VP +Y+H P              +  +YP PIVDH K     + +Y
Sbjct: 408 KGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKY 467

Query: 475 YAAKKQS 481
             AK+++
Sbjct: 468 EWAKEKA 474


>gi|298490155|ref|YP_003720332.1| deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
 gi|298232073|gb|ADI63209.1| Deoxyribodipyrimidine photo-lyase ['Nostoc azollae' 0708]
          Length = 479

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/478 (35%), Positives = 238/478 (49%), Gaps = 18/478 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI+DN  L AA   S +K++ VF   P       ++  +  ++   L  ++K
Sbjct: 6   LFWHRRDLRISDNTGLIAAREQS-SKIVGVFCLDPCILNSDDVAPARIKYMMGCLQSLEK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
             +Q G          +D+ I  + +     +V  +F+N   E     RD  +   L+ +
Sbjct: 65  QYTQAGSQLVIL----YDNPIAVIPALAEALKVKAVFWNWDVEPYAQIRDNDVICVLREK 120

Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA------I 182
            I       D +L  P  IL+ +   Y VYTPF K          + +L           
Sbjct: 121 GIQTLNQNWDQLLHSPDEILSGSKTPYTVYTPFWKNWSSKPKANPVATLKNSEGLTAAEQ 180

Query: 183 RLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            +       N+P   D  F    + +   GE  A   L  F    +  Y EQR+ P + G
Sbjct: 181 EIAKQSGAINLPSAQDLGFIWDGELIIEPGEAVAKARLETFTTSAINEYQEQRNFPTVHG 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPS 300
           TSQLS  L  GV+  R  W   KE       +   +   +W  E  WREFY+H M  +P+
Sbjct: 241 TSQLSAALKFGVIGIRTIWQATKELLETSNSEEVTASIRTWQQEFAWREFYQHAMYHFPA 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G  +    +K  W  +    QAW +G TG+PI+DAAMRQLN IGWMHNR RMI ASF
Sbjct: 301 LANG-AYRDIFKKFPWQNNQAHFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVASF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL+++ + GE+YFM +L+DGDL++NNGGWQW+AS+G DS P  RIFNP  Q ++FD 
Sbjct: 360 LTKDLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDSKP-LRIFNPASQAQKFDI 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            G +IR W+ EL +V T+Y+ +  +       ++ YP PIVDHKK        Y   K
Sbjct: 419 DGEYIRQWVRELKSVDTEYLVS-GNITPLERRAVGYPTPIVDHKKQQGLFKQLYQEQK 475


>gi|294055436|ref|YP_003549094.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
           45221]
 gi|293614769|gb|ADE54924.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
           45221]
          Length = 476

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/490 (34%), Positives = 258/490 (52%), Gaps = 33/490 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  + +VW RNDLR +DN AL AA    +A ++ VFI       +  + A    +++ SL
Sbjct: 2   SAPLAIVWFRNDLRFSDNAALAAAIAEGNA-ILPVFIRDQVSEGRWPMGAASKWWLHESL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +  +S +  G    +       DS+  L +   +   T +++NR+YE +   +D  +++
Sbjct: 61  KRFAQSWNSCGGDLIFRNG----DSLAELRAIAAESGATSIYWNRRYEGHLREQDAQIKR 116

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------- 176
            L +  +  KS++ S+L  P +I N   + YKVYTP+ KA+    V   +          
Sbjct: 117 ELFEDGLEVKSYNSSLLNEPHTIGNKEGRPYKVYTPYFKAVKDRPVARPVVPDLTAMAFP 176

Query: 177 --LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
             LP         + PSN        ++  +  +   E+ A   + +F   +V  Y   R
Sbjct: 177 DELPQSLALDALDLLPSNQW------YRKFESKWEPSEEGAKQQVDEFLSLRVERYDTDR 230

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P + GTS LSPYL  G + PRQ  + L E   DL    + G F +L E+ WREF  ++
Sbjct: 231 DRPDLDGTSALSPYLHFGQIGPRQLVHEL-ELRADL---EEQGPFIFLKEIYWREFAYNV 286

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P      P  P  E   W +++ LL  WK+G TG+PI+DA MRQL   GWMHNR+R
Sbjct: 287 LYHFPRTAES-PLQPQYESFPWEQNADLLSLWKRGKTGYPIVDAGMRQLWQTGWMHNRVR 345

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI +S LVK LL DW+ G  +F   L+D DLASN  GWQW+   G D+ PYFRIFNP IQ
Sbjct: 346 MIVSSLLVKHLLQDWKEGARWFWDTLVDADLASNTLGWQWSGGCGADAAPYFRIFNPMIQ 405

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACH 468
           GK+FDP+  ++R ++PEL+ +P +YIH P    D+       +L ++YP P+V+H     
Sbjct: 406 GKKFDPEALYVRRFVPELSRLPNKYIHEPWEAPDEVLAEAGIELGVDYPYPVVEHAVGRQ 465

Query: 469 HTLNQYYAAK 478
             L+ Y + +
Sbjct: 466 RALSAYESFR 475


>gi|23954324|emb|CAC82538.1| Cryptochrome 2 [Oryza sativa Indica Group]
          Length = 651

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 136/480 (28%), Positives = 218/480 (45%), Gaps = 28/480 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA    D  V+ VFI  P    Q         ++  SL  + 
Sbjct: 7   TVVWFRRDLRIDDNPALAAAAR--DGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  +   ++E L         T+L YN  Y+   + RD  ++K L  
Sbjct: 65  QSLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSA 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  +SF+  +L  P  I + +   +  +  + +  ++  +       P   +   G +
Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPG-L 180

Query: 189 TPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                    D   ++          +   +  G +NA  +L +F    +  Y +      
Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSPYL  G +S R+ +  ++ + +    +  S A      ++  +  RE+ R+L
Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     K  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R
Sbjct: 301 CFNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK LL+ W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +Q
Sbjct: 360 VIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 419

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
           G+++DP G ++R W+PEL  +PT++IH P             +L  NYP PIVD   A  
Sbjct: 420 GQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARE 479


>gi|313126193|ref|YP_004036463.1| deoxyribodipyrimidine photo-lyase type i [Halogeometricum
           borinquense DSM 11551]
 gi|312292558|gb|ADQ67018.1| deoxyribodipyrimidine photo-lyase type I [Halogeometricum
           borinquense DSM 11551]
          Length = 469

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 155/475 (32%), Positives = 236/475 (49%), Gaps = 17/475 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL W R DLR++DN  L  A    D  V+ VF+   +        A +  F+  +L ++
Sbjct: 1   MHLHWHRRDLRVSDNHGLVTAADAGD--VVPVFVFDDDVLA--HAGAARVRFMLDALARL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++  ++       +     D  E L     +     + +N+ Y      RD+ + + L 
Sbjct: 57  RETYRERDSDLVVVRG----DPTEELPRLAAEYDADGVVWNKDYSRLARTRDEAVRRALD 112

Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   +  D++   PGSI  +A   Y VYT F K                P       
Sbjct: 113 EAGVAHDAVHDAIHHEPGSITTNAGDPYSVYTYFWKKWRNRNKADPFSP---PEADSLAD 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           V+ +++P   +  F   D      G + A   L  FC++ +Y Y   RD P    TS+LS
Sbjct: 170 VSGADLPTIEELGFSDPDATIQEAGTEAARERLAAFCEDAIYRYATDRDYPERNATSRLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCMGK 305
             L  G +  R+ +   +E   +     ++     + ++L WREFY H++ F P V    
Sbjct: 230 ADLKWGTIGIREVYAATEEAAENADSDDEAKSVEEFQSQLAWREFYTHVLYFNPDVVTQN 289

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +  +   I W +D   L AWK+G TG+PI+DA MRQL    +MHNR+RMI ASFL KDL
Sbjct: 290 -YKEYENDIAWREDEEALTAWKEGRTGYPIVDAGMRQLREEAYMHNRMRMIVASFLTKDL 348

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR G  +F + L D D A++NGGWQWAASTG D+ PYFRIFNP  QG+R+DP  T+I
Sbjct: 349 LIDWREGYAHFRAYLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDATYI 408

Query: 426 RHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL +     IH     S  ++  ++  YP PIV+H K     ++ + AA+
Sbjct: 409 QQYVPELRDATADEIHDWPNLSPTERETVAPEYPDPIVEHSKRRDQAISMFEAAR 463


>gi|148256271|ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
 gi|146408444|gb|ABQ36950.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
          Length = 481

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 152/484 (31%), Positives = 238/484 (49%), Gaps = 18/484 (3%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + S  +VW R  LR++D+ AL+AA   S A VI  ++   E      +      ++  SL
Sbjct: 2   SFSPIVVWFRESLRLSDHPALHAAA-TSGAPVICCYVYDTESAALRPLGGASRWWLAQSL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +Q  L   G+     +      S + +     +   + +++N   +         +E 
Sbjct: 61  RALQDELDALGVKLVIRRGP----SAKAISELAREASTSAVYWNDVAQTGPRAVAAEVEA 116

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    V  + F D +L+ P  +     +  +V+TPF K ++          +PV     
Sbjct: 117 ALDAIGVKSRVFADDLLIDPAELRGKDGRGPRVFTPFWKRVLALGDPPKPLPVPVRLSSP 176

Query: 185 TGPVTPSNIPRFFDYPFQ----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           +G  + +      +         +   +  GE+ A   L KF +  V  Y   RD P I+
Sbjct: 177 SGVASLTVDKLALEPTSPDWAGGLRTTWRAGERAAQARLAKFLETTVRGYAADRDRPDIE 236

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LSP+L  G +SPRQ W+  +    +       G   +L+EL WREF RHL+   P 
Sbjct: 237 ATSRLSPHLRFGEISPRQIWHAAR-FAAEQQPAFARGIDKFLSELGWREFSRHLLFNNPD 295

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +   +   P  +   W++D+  L+AW++G TG+PI+DA MR+L   G MHNR+RM+ AS 
Sbjct: 296 LAT-RNLQPSFDAFPWSQDAAALRAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAASL 354

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+DWR+GE++F   L+D D  SN   WQW A +G D+ PYFR+FNP +QG++FD 
Sbjct: 355 LVKHLLIDWRLGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDS 414

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474
            GT++R W+PEL  +P   IH P +            L  +YP P+VDH+      L  Y
Sbjct: 415 SGTYVRRWVPELARLPAALIHQPWAAKPLELAEAGVVLGRSYPAPVVDHRHGRERALAAY 474

Query: 475 YAAK 478
            + +
Sbjct: 475 ASLR 478


>gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
 gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
          Length = 477

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 163/485 (33%), Positives = 226/485 (46%), Gaps = 26/485 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ----HGISARQSHFIYA 63
           S  L W R DLR+ DN  L AA   S A V  V++  P+          ++  +  F+  
Sbjct: 4   SRVLFWHRRDLRLADNLGLVAATDISPA-VTGVYVLDPQLINPTEHLPPMAPARLWFLIE 62

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL+++Q+   + G      +     D +  L     Q     + ++R  E     RD+ +
Sbjct: 63  SLVELQQRWREAGSRLLVVKG----DPVAVLPQLAQQIGAEAVVWSRDVEPYARERDRQV 118

Query: 124 EKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            K+LQ          D +L+ P  +       Y+VY PF +     ++     ++  P  
Sbjct: 119 AKKLQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVLAKQPSTVAAPTG 178

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQR 234
            +   + P+ +P             F          GE  AL  L  FC   +  Y   R
Sbjct: 179 LV--DLDPAQLPALESLEALRESHGFKGAEICPCRPGEAAALAQLNSFCDGPLLAYEPDR 236

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRH 293
           + P   GTS LS  LS+G LSPRQ W   ++       +        W  EL WREFY+ 
Sbjct: 237 NFPGTAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEHLQAIAVWEQELGWREFYQQ 296

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +  +P +  G P+     +  W  +      WK+G TG PIIDAAMRQLN  GWMHNR 
Sbjct: 297 ALFHFPELADG-PYREKWHRFPWENNEDWFDFWKEGQTGMPIIDAAMRQLNQTGWMHNRC 355

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  P  RIFNP  
Sbjct: 356 RMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPAT 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q  +FD  G +IR W+PEL +V T+ +    S         +YP P+VDHKK        
Sbjct: 415 QASKFDSAGDYIRQWVPELRHVNTKDL---LSGEIGALERRDYPEPLVDHKKQQARFKAL 471

Query: 474 YYAAK 478
           Y   +
Sbjct: 472 YATLR 476


>gi|94990761|ref|YP_598861.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270]
 gi|94544269|gb|ABF34317.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270]
          Length = 477

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 175/487 (35%), Positives = 249/487 (51%), Gaps = 22/487 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +   ++ V ++W R DLRI D KAL      S +  + VF    EQ      S  QS FI
Sbjct: 3   RRKGSVMVSVMWFRRDLRIDDQKALAHVIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFI 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+L  +K L  +GI              + L         T +++N         RD+
Sbjct: 61  T-SVLAFRKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQ 116

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
              +  +   I   ++ D  L     I+N + Q YKV+TP+ +       +  ++ + + 
Sbjct: 117 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELS 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             R     TP ++ R  +  F+            A   L +F ++++  Y   RD PA  
Sbjct: 176 QDRWLNLETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQL 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS+LSP+L IG +  R  ++ +++           G  ++L EL WR+FY  +   YP 
Sbjct: 235 GTSRLSPFLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPD 288

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASF
Sbjct: 289 Q-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASF 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDLL DWR+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP
Sbjct: 348 LTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDP 407

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474
           +G FI+ +LP+L +VP +Y+H P              +  +YP PIVDH K     + +Y
Sbjct: 408 KGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAKQREQAIAKY 467

Query: 475 YAAKKQS 481
             AK+++
Sbjct: 468 EWAKEKA 474


>gi|40644276|emb|CAD35495.1| cryptochrome 2 [Oryza sativa Indica Group]
          Length = 651

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 136/480 (28%), Positives = 218/480 (45%), Gaps = 28/480 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA    D  V+ VFI  P    Q         ++  SL  + 
Sbjct: 7   TVVWFRRDLRIDDNPALAAAAR--DGVVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  +   ++E L         T+L YN  Y+   + RD  ++K L  
Sbjct: 65  QSLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSA 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  +SF+  +L  P  I + +   +  +  + +  ++  +       P   +   G +
Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPG-L 180

Query: 189 TPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                    D   ++          +   +  G +NA  +L +F    +  Y +      
Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSPYL  G +S R+ +  ++ + +    +  S A      ++  +  RE+ R+L
Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     K  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R
Sbjct: 301 CFNFP-FTREKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK LL+ W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +Q
Sbjct: 360 VIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 419

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
           G+++DP G ++R W+PEL  +PT++IH P             +L  NYP PIVD   A  
Sbjct: 420 GQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARE 479


>gi|325928738|ref|ZP_08189908.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
           91-118]
 gi|325540906|gb|EGD12478.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
           91-118]
          Length = 472

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/480 (31%), Positives = 224/480 (46%), Gaps = 17/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + SL 
Sbjct: 1   MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L   G            +S + LD    Q     +++NR+YE     RD  +++ 
Sbjct: 60  ALDGALRALGSGLVIRSG----NSAQVLDEVIAQTGAAAVYWNRKYEPATQPRDAQIKRD 115

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ R I  +S + ++L  P  +       YKV+TPF +  +  L        P     L 
Sbjct: 116 LRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPLP 175

Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +    +      P     Q     +  GE  A  +L  F    +  Y E RD P   G
Sbjct: 176 ASLKTDALDTLQLVPGLQWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  + L+        +  +   +++ +L WR+F  HL+  +P  
Sbjct: 236 TSQLSPHLHFGEIAPWRIASTLETH---RTARNGAEIDAYIRQLGWRDFAYHLLHHFPD- 291

Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              +   P     +W   D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI ASF
Sbjct: 292 TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 351

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDP
Sbjct: 352 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411

Query: 421 QGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
           Q  +I  W+PEL  +  +   AP    L     +  YP  PI+   +     L  Y  ++
Sbjct: 412 QAAYITRWVPELGKLAVKERFAPWLHPLSLARFAPEYPRNPIIGLAEGRDAALAAYAKSR 471


>gi|294626579|ref|ZP_06705177.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599146|gb|EFF43285.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 484

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/483 (31%), Positives = 224/483 (46%), Gaps = 17/483 (3%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
              MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + 
Sbjct: 10  RVRMSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHR 68

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  +L   G            +S + LD    Q     +++NR+YE     RD  +
Sbjct: 69  SLAALDGALRALGSGLVIR----VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 124

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L+ R I  +S + ++L  P  +       YKV+TPF +  +  L        P    
Sbjct: 125 KRDLRERGIEVQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMGAPRSLP 184

Query: 183 RLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            L   +    +      P     Q     +  GE  A  +L  F    +  Y E RD P 
Sbjct: 185 PLPASLKTDALDMLQLVPGVQWDQGFWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRPD 244

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             GTSQLSP+L  G ++P +  + L+        +  +    ++ +L WR+F  HL+  +
Sbjct: 245 RVGTSQLSPHLHFGEIAPWRIASTLETH---RTARNGAEIDGYIRQLGWRDFAYHLLHHF 301

Query: 299 PSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           P     +   P     +W   D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI 
Sbjct: 302 PD-TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIV 360

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++
Sbjct: 361 ASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEK 420

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYP-LPIVDHKKACHHTLNQYY 475
           FDPQ  +I  W+PEL  +  +   AP    L    ++  YP  PI+   +     L  Y 
Sbjct: 421 FDPQAAYITRWVPELGKLAVKERFAPWLHPLSLARVAPQYPRAPIIGLAEGRDAALAAYT 480

Query: 476 AAK 478
            ++
Sbjct: 481 KSR 483


>gi|89094232|ref|ZP_01167174.1| Deoxyribodipyrimidine photolyase [Oceanospirillum sp. MED92]
 gi|89081487|gb|EAR60717.1| Deoxyribodipyrimidine photolyase [Oceanospirillum sp. MED92]
          Length = 468

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 186/475 (39%), Positives = 265/475 (55%), Gaps = 16/475 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAAC-HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + LVW RNDLR  D+ ALY AC  N+   V+ V I TP QW+    S  +  F  A+L  
Sbjct: 1   MKLVWFRNDLRTGDHHALYQACMDNTGEGVLGVAIITPVQWKIQDESKSRVQFWRANLES 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L    I     +  +  +    L     + +V+ +++NR+Y + E +RD  +   +
Sbjct: 61  LSCDLQSLNIPLLILRVPSNREIPALLVELAKRYQVSGVYFNREYPLYEQQRDNAVISAM 120

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               V C SFD  V+LP G++LN     +KV+TPF K   Q  + ++ + LPVP ++   
Sbjct: 121 AEISVPCLSFDSDVVLPAGTVLNQQGLPFKVFTPFSKRWRQQYLTSNPQPLPVPPVQAKL 180

Query: 187 PVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            ++  ++P+   YP           +P G + A  +L+ +  EKV  Y + RD PA  GT
Sbjct: 181 DISTDSVPKEICYPITVGADWSSERWPAGTEAAHKLLQHYVLEKVADYKQSRDFPAEPGT 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYLS+GVLS RQC   ++  F     +P+     W+ ELIWREFYRHL+  +P + 
Sbjct: 241 SSLSPYLSVGVLSTRQCLAAMQAYF----DQPEWFDSQWVTELIWREFYRHLLVLFPEMN 296

Query: 303 MGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
             +PF P  E K+ W  D  L QAW +G TGF I+DA M++L   GWMHNR+RMITASFL
Sbjct: 297 RWEPFKPEVEEKLSWQYDESLFQAWCKGETGFAIVDAGMKELLETGWMHNRVRMITASFL 356

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L  DWR+G  +FM  L+DGD ASN GGWQW+AS G D+ PYFRIFNP  Q +RFD +
Sbjct: 357 TKLLRQDWRLGARFFMQHLIDGDFASNLGGWQWSASVGADAAPYFRIFNPMRQAERFDAK 416

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           G ++  ++P L  + +   H P      +      P PI+D+     ++L+ Y A
Sbjct: 417 GRYVGQYVPSLQGLTSVQQHDPMFAASYSR-----PTPIIDYAYERQYSLDAYKA 466


>gi|289662993|ref|ZP_06484574.1| photolyase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 484

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/481 (32%), Positives = 231/481 (48%), Gaps = 19/481 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA        I ++I    +  +    A    + + SL 
Sbjct: 13  MSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDALHEEGEWTPGAASRTWRHRSLA 71

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L  +G            DS + LD    Q     +++NR+YE     RD  +++ 
Sbjct: 72  ALDDALRARGSGLVIR----AGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRA 127

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSLPVP 180
           L+ R I  +S + ++L  P  +       YKV+TPF +  +  L     V A     P+P
Sbjct: 128 LRERGIEAQSCNSALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPRSLPPLP 187

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           A   T  +    +    ++  Q     +  GE  A  +L  F    +  Y E RD P   
Sbjct: 188 AALKTDALDTLQLVSSLNWD-QGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRV 246

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSP+L  G ++P +  + L+        +  +    ++ +L WR+F  +L+  +P 
Sbjct: 247 GTSQLSPHLHFGEIAPWRIASTLEAH---RTARNCAEIDGYIRQLGWRDFAYYLLHHFPD 303

Query: 301 VCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               +   P  E  +W K D   L AW++G TG PI+DA MRQL   GWMHNR+RMI AS
Sbjct: 304 -TTNQNLNPRFEGFDWAKVDPVALHAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVAS 362

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FD
Sbjct: 363 FLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFD 422

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAA 477
           PQ T+I  W+PEL  +  +   AP    L     +  YP  P++   +     L  Y  +
Sbjct: 423 PQATYITRWVPELGKLAVKERFAPWLHPLSLARFAPEYPRTPVIGLAEGRDAALAAYAKS 482

Query: 478 K 478
           +
Sbjct: 483 R 483


>gi|332978155|gb|EGK14890.1| deoxyribodipyrimidine photo-lyase [Psychrobacter sp. 1501(2011)]
          Length = 566

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 180/553 (32%), Positives = 261/553 (47%), Gaps = 88/553 (15%)

Query: 11  LVWLRNDLRITDNKALYA--------------------------ACH-----NSDAKVIA 39
           L+W R DLR+ DN AL                            A       ++  K+ A
Sbjct: 13  LMWFRRDLRVEDNTALSQLTDLAKQALTQNDPSQLDVSQSSVSKAAQPTILNSAQPKIHA 72

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYC 98
           +F+ T EQW +H +S  Q  FI+ +L  +  SL +Q  I     + ++FD  IE + ++C
Sbjct: 73  LFVVTAEQWLEHDMSIVQMDFIFRTLKVLATSLFNQLNIELHVLKTADFDSCIETVANFC 132

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKV 157
            Q  +T +  N +YE+NE++RD  +E+RL+ + +    + D  +LPP ++  +   MYKV
Sbjct: 133 QQHSITHMASNYEYEVNEMQRDAAIEQRLKQQDIEFSRYHDQCILPPKALTTNDETMYKV 192

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP----------------- 200
           +TPF K     L  +         +    P                              
Sbjct: 193 FTPFYKKWQSILETSPPNLYSTEKVNSDKPTAERLSQILATIDDLHQQTLRLFSKAYFET 252

Query: 201 -----------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                       +  +  F  GE  A   L+ F  E V  Y   RD P+++ TS+LS YL
Sbjct: 253 ESVNQDHQAQLLKNAEETFVAGEVAAYQQLQTFLAEDVQRYDIARDQPSLEATSRLSAYL 312

Query: 250 SIGVLSPRQCWNRLKEEFVDLL---------------------IKPKSGAFSWLNELIWR 288
           ++G +SPR C+ + K+    +                         +     W++EL WR
Sbjct: 313 TVGAISPRVCYLKAKQAAEAIYETNALNQSKKRPTKPLENSNEAGAEQDIQRWISELAWR 372

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           +FYRH++A  P +  G  F    + K+ W+ D      W QG TG P+IDAAMR LN  G
Sbjct: 373 DFYRHVIADRPDIVKGTAFNKVADTKVHWSYDEQDFNRWCQGQTGVPLIDAAMRCLNQTG 432

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNRLRM+TA FL KDL +DWR GE YFM +L+DGD ASNNGGWQW+AS G D+ PYFR
Sbjct: 433 FMHNRLRMVTAMFLTKDLFIDWRWGERYFMQRLIDGDFASNNGGWQWSASVGTDAAPYFR 492

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-----LNYPLPIVD 462
           I NP  Q K  D +  FI+ WLPEL  V    +H                 ++YP P+V+
Sbjct: 493 IMNPFSQAKTHDKEAIFIKTWLPELKAVKPSILHDEAKLRQALSAKGELANVDYPQPMVE 552

Query: 463 HKKACHHTLNQYY 475
           HK+A  + + Q+ 
Sbjct: 553 HKQARLYAIGQFK 565


>gi|78047092|ref|YP_363267.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78035522|emb|CAJ23168.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 500

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 154/481 (32%), Positives = 223/481 (46%), Gaps = 17/481 (3%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + SL
Sbjct: 28  RMSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHRSL 86

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L   G            DS + LD    Q     +++NR+YE     RD  +++
Sbjct: 87  AALDGALRALGSGLVIRSG----DSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKR 142

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+ R I  +S + ++L  P  +       YKV+TPF +  +  L        P     L
Sbjct: 143 DLRERGIEVQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPL 202

Query: 185 TGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
              +    +      P     Q     +  GE  A  +L  F    +  Y E RD P   
Sbjct: 203 PASLKTDALDTLQLVPGLQWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRV 262

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSP+L  G ++P +  + L+        +  +    ++ +L WR+F  HL+  +P 
Sbjct: 263 GTSQLSPHLHFGEIAPWRIASTLEAH---RTARNGAEIDGYIRQLGWRDFAYHLLHHFPD 319

Query: 301 VCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               +   P     +W   D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI AS
Sbjct: 320 -TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVAS 378

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FD
Sbjct: 379 FLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFD 438

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAA 477
           P  T+I  W+PEL  +  +   AP    L     +  YP  PI+   +     L  Y  +
Sbjct: 439 PHATYITRWVPELGKLAVKERFAPWLHPLALARFAPEYPRNPIIGLAEGRDAALAAYAKS 498

Query: 478 K 478
           +
Sbjct: 499 R 499


>gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
           51756]
 gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
           51756]
          Length = 476

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/488 (32%), Positives = 251/488 (51%), Gaps = 25/488 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +    +V  RNDLR+ D+ AL+ A       V+ V++            +    +   SL
Sbjct: 2   SQPTTIVLFRNDLRLADHPALWYAAQRG--PVLPVYLRH----AADSYGSAWRWWHGESL 55

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           L++Q +L+Q+G+       +    +   L           +++NR+Y+ + +  D+ L+ 
Sbjct: 56  LKLQAALAQRGLPLLLRSGT----AKAVLPEIVRASGADAVYWNRRYDRDGIAEDQELKS 111

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             +   V  +SF  ++L+ P   L    Q Y+V+TPF KA++         + P      
Sbjct: 112 LFKELGVEARSFPGNLLVEPWEHL-REGQPYRVFTPFWKAMLARHRFPQPLAEPESYRAP 170

Query: 185 TGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           T      ++ R+  +P        +   + +GE+ A   LR F  E + +Y E R++P  
Sbjct: 171 TAIPASEDLARWGWHPHHPDWSIGLARHWEVGEEAAWRRLRDFVDEGLAHYAEGRNLPGK 230

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              S+LSPYL+ G +SPRQ W  L     +     +    ++L EL WREF  HL+  +P
Sbjct: 231 PFVSRLSPYLAHGEISPRQIWWHLSRLAEEQGA-WRRNVDAFLRELGWREFSWHLLYHFP 289

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   +P  P  ++  W +D   L+AW +  TG+PIIDA MR+L   GWMHNR+RMI AS
Sbjct: 290 DLPR-EPLRPEFQRFPWRQDPAALRAWTRARTGYPIIDAGMRELWESGWMHNRVRMIVAS 348

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVKDL + W+ GE +F   L+D DLA+N+  WQW A  G D+ PYFR+FNP +Q ++FD
Sbjct: 349 FLVKDLRIPWQEGEAWFWDTLVDADLANNSASWQWVAGCGADAAPYFRVFNPVLQAQKFD 408

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           PQG ++R WLP+L  +P  +IHAP              L   YP P+VDH +A    L  
Sbjct: 409 PQGDYVRRWLPQLQRLPADHIHAPWQAPAVVLEQAGIALGKEYPRPLVDHHEAREAALAA 468

Query: 474 YYAAKKQS 481
           + A ++++
Sbjct: 469 WEAIRREN 476


>gi|262277239|ref|ZP_06055032.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
 gi|262224342|gb|EEY74801.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
          Length = 470

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 155/483 (32%), Positives = 252/483 (52%), Gaps = 28/483 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + + WLRND R+ DN+AL     + +      F+       ++   + Q  ++Y +L   
Sbjct: 4   MLIYWLRNDFRLNDNEALSYLLSSENND----FVFFSYDKEKYKFRSAQKWWLYKTLKIF 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
            K LS+ G+ F       +     +L+     +++T++ +N+ +   E+  +  + K L 
Sbjct: 60  DKKLSEIGVKFIVENDLEY----SFLEKIIKNKKITEVCWNKIFSPEEIAIENNIIKLLE 115

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           ++ +  K F  ++L  P          ++V+TPF K      ++          I+    
Sbjct: 116 KNNIKYKIFSSNLLQNPDQCRKKDNTPFQVFTPFWKNAEMIYLKN--YKYKKNLIKSKKS 173

Query: 188 VTPSNIPRFFDY-----PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +  +N  +          ++  +  +  GE  AL  ++ F  EK+ +Y + RD P+I+GT
Sbjct: 174 LKNNNQSKIETILPKKKWYEKFEKYWFPGEDIALKKIKSFNSEKINFYDKNRDFPSIEGT 233

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP+L+ G +SP++ ++   +     +   K G   +LNE+ WREF  HL+  +P + 
Sbjct: 234 SKLSPHLAFGEISPKKIYDECTK-----IKNKKIGVTKFLNEIGWREFAYHLINHFP-IM 287

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           + K      +K  W+++   L  WK+G TG+PI+DAAM+QL   GWMHNRLRM+  SFLV
Sbjct: 288 LKKNLRKNFDKFPWSENKKFLDKWKKGNTGYPIVDAAMKQLYETGWMHNRLRMVVGSFLV 347

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L ++W  GE+YF   LLD D A+N  GWQW A  G D+ PYFRIFNP  QG++FDP G
Sbjct: 348 KHLRINWTEGEKYFKDTLLDYDTANNVSGWQWIAGCGADAAPYFRIFNPITQGEKFDPNG 407

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYA 476
            F+++W+P L  VP ++IH P    ++       +L  +Y  PIVDHK A    L  +  
Sbjct: 408 EFVKYWIPNLKKVPKKFIHKPWELPEEQAKLINFNLIKDYFEPIVDHKIAREAALKAFEF 467

Query: 477 AKK 479
            KK
Sbjct: 468 TKK 470


>gi|126728554|ref|ZP_01744369.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
 gi|126710484|gb|EBA09535.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
          Length = 472

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/487 (34%), Positives = 231/487 (47%), Gaps = 36/487 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T     LVW R DLR++D+ AL  A   S   VI VFI         G+       +   
Sbjct: 2   TDTPPTLVWFRRDLRLSDHAALTEAA--SGGPVIPVFIRD---ALVDGLGTAPQWRLGLG 56

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L    ++L  KG             ++E L     +     ++++R Y+ + V RD  ++
Sbjct: 57  LKSFAEALEAKGSRLILRSGP----AVEVLSELVNETGAKAVYWSRAYDPDSVDRDTRVK 112

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L+   I  +SF   +L  P ++       YKVYTPF KA+    V A L S       
Sbjct: 113 ETLKGDGIDAQSFTGHLLFEPWTVETGQGGFYKVYTPFWKAVRGCDVPAALSS----PSD 168

Query: 184 LTGPVTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           L  P T  +     D+            + P   +GEQ A   L  F ++KV  Y   RD
Sbjct: 169 LQAPATWPDGETLADWELGKGMRRGADVVRPYVQLGEQAAQTRLGVFMRDKVADYATTRD 228

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
             +  GTS LS  LS+G +SP QCW+       D     K GA ++L EL+WREF  HLM
Sbjct: 229 EVSKDGTSCLSENLSLGEISPAQCWHAGCRAIED----GKPGAETFLKELVWREFAYHLM 284

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
              P +  G     W +   W  D  L  ++AWKQG TG P +DAAMR+L   G MHNR 
Sbjct: 285 WHTPRLLDGNWRQEW-DGFPWKTDERLREVKAWKQGRTGIPFVDAAMRELYVTGRMHNRA 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI AS+L K L+  W+IG  +F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  
Sbjct: 344 RMIVASYLTKHLMCHWKIGMAWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPVT 403

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACH 468
           Q ++FDP   ++  W+ E    P+     Y  A P SW         YP PIVD K+   
Sbjct: 404 QREKFDPDCAYVTRWIAEGRKSPSDTALSYFDAIPESWPMAP--GDAYPDPIVDPKEGRE 461

Query: 469 HTLNQYY 475
             L+ Y 
Sbjct: 462 AALDAYQ 468


>gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
           5J108-111]
 gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
           5J108-111]
          Length = 452

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/445 (37%), Positives = 248/445 (55%), Gaps = 18/445 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W R DLR++DN AL  A  ++D  +I ++I   +      +   Q  +++ SL  +
Sbjct: 2   TTIFWFRQDLRLSDNPALVEAAKSAD-HLIPLYILDDQL---KMLGDAQRWWLHHSLSSL 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q +LS+KG      +     D+   L     + +V K+++NR YE      D  LE RL 
Sbjct: 58  QTALSKKGTSLILKKG----DTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLP 113

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIR 183
             +  + +  ++L  P  I N +   YK++TPF K +  +L      + P       AI+
Sbjct: 114 P-LSVEIYHSTLLTEPQKIKNKSGGYYKIFTPFWKHINASLQPRKTLAAPKKFSQHRAIK 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                T + +P+  D+  Q  D  +  GE+NA  +L+KF KE +  Y   RD P I  TS
Sbjct: 173 SDNLETWNLLPKHPDWS-QGFDQ-WKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL  G +S RQ W  + +  +      +  A  +L +LIWREF  +L+  +P +  
Sbjct: 231 HLSPYLHFGEISIRQVWTAITQATIQ-DKNLQKAADVFLRQLIWREFAYYLLWHFPQMGK 289

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    +  +W K+ + L+AW++G TG+PI+DA MR+L   G+MHNR RMI ASFLVK
Sbjct: 290 SN-FRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRARMIVASFLVK 348

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL++DWR GE++F + LLD DLA+N  GWQW A  G D+ PYFRIFNP +Q K+FDP GT
Sbjct: 349 DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGLDAAPYFRIFNPILQSKKFDPDGT 408

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD 448
           +I+ W+PEL  VP++YIH P    D
Sbjct: 409 YIKRWIPELAKVPSKYIHYPADMPD 433


>gi|292657024|ref|YP_003536921.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
 gi|291372710|gb|ADE04937.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
          Length = 484

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 150/490 (30%), Positives = 227/490 (46%), Gaps = 29/490 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R DLR+ DN+ L  A       V  +F+   +        A +  ++  +L ++
Sbjct: 1   MQLHWHRRDLRVADNRGLATAAEAG--PVAPLFVFDRDVLD--HAGAPRVRYLLDALAEL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +  ++G      +          + +        +  +   Y      RD  +   L 
Sbjct: 57  RGAYQERGSDLLVARGDPR----TVVPAVAAAFDAERAVWGIDYSGLARERDADVRLALD 112

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              + +    D++  PPGSI  +A   Y VYT F K                  +     
Sbjct: 113 DAGVAREPVHDAIFHPPGSITTNAGDTYSVYTYFWKKWRDRDKPDPYPEPDADDLVDAAT 172

Query: 188 VTPSN----------------IPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYY 230
           +  +                 +P   D  F+     + P G + A   L  FC + +Y Y
Sbjct: 173 LESAAEDLTNGDAEFDIAVGGLPTISDLGFEEPSASVQPAGTEAARERLSAFCADAIYRY 232

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD P    TS+LS  L  G +  R+ +         +  +       + ++L WREF
Sbjct: 233 ADDRDYPTRDATSRLSTDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWREF 292

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y H++  +P+V     +  + E I W  D   L AWK G TG+PI+DA MRQL    +MH
Sbjct: 293 YAHVLRGHPNVVTEN-YKEYEEDIAWRDDDEELAAWKAGETGYPIVDAGMRQLREEAYMH 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RMI ASFL KDLL DWR G  +F   L D D A++NGGWQWAASTG D+ PYFRIFN
Sbjct: 352 NRVRMIVASFLTKDLLCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACH 468
           P  QG+R+DP G +I+ ++PEL++V    IH  H    L++  L+ +YP PIVDH +   
Sbjct: 412 PMTQGERYDPDGEYIKRYVPELSDVTANTIHEWHELTDLERERLAPDYPEPIVDHAERRE 471

Query: 469 HTLNQYYAAK 478
             ++ + AA+
Sbjct: 472 RAISMFEAAR 481


>gi|146297827|ref|YP_001192418.1| deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
 gi|146152245|gb|ABQ03099.1| Deoxyribodipyrimidine photo-lyase [Flavobacterium johnsoniae UW101]
          Length = 431

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 150/474 (31%), Positives = 222/474 (46%), Gaps = 50/474 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T   V   W R DLR+ DN  L+ A   SD  VI +FI   +       +  +  FIY S
Sbjct: 2   TKQKVSFFWFRRDLRLEDNTGLFHALQ-SDLPVIPLFIFDEDILDNLPKNDARVSFIYDS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++   L+         +            S   +  +  +F+N+ YE   ++RD  + 
Sbjct: 61  LQKINNELNTFESSILIKKGKT----TAVWKSLLSEFDIQNVFFNKDYEPFAIKRDTAIC 116

Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSLPVPAI 182
             L+   V C SF D V+     I       Y VYTP++   ++       +      ++
Sbjct: 117 SLLKENNVECFSFKDHVIFEEKEITKADGSPYTVYTPYKNKWLEKYHFLGTVPECDSSSM 176

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                 T  + P   +  F+             + +L     + +  Y E RD PA+  T
Sbjct: 177 HSNFAKTKFSFPDLTEIGFKRST----------IKVLPHNLTQ-IANYKETRDFPALDST 225

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSP+L  G +S R+  N    +             ++L+ELIWREF+  ++  +P+ C
Sbjct: 226 SYLSPHLRFGTVSIRKLVNWANRKNQ-----------TFLSELIWREFFIQILFSFPN-C 273

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           +   F    + I+W  +    + W  G TG+P++DA MRQLN  G+MHNR+RM+ ASFL 
Sbjct: 274 VNHNFKSAYDGIQWRNNEEDFKRWCSGNTGYPMVDAGMRQLNETGYMHNRVRMVVASFLC 333

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL++W+ GE YF  +LLD +LASN G WQWAA TG D+ PYFR+FNP IQ K+FD +G
Sbjct: 334 KHLLINWQWGEAYFAEKLLDFELASNVGNWQWAAGTGCDAAPYFRVFNPEIQQKKFDEKG 393

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            +IR W+PE +                      Y  P+VDH  A   T+  Y A
Sbjct: 394 EYIRKWIPEFD--------------------FGYAEPMVDHAFARDRTIATYKA 427


>gi|332293614|ref|YP_004432223.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171700|gb|AEE20955.1| Deoxyribodipyrimidine photo-lyase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 465

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 145/480 (30%), Positives = 223/480 (46%), Gaps = 48/480 (10%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
              ++  V++ W R DLR+ DN     A    D  V+ +FI   E   +      +  FI
Sbjct: 28  TTMSSNKVNIFWFRRDLRLDDNVGFLEALK-GDLPVLPIFIFDKEILDKLPKDDARVTFI 86

Query: 62  YASLLQVQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           + +L +++ +L  +            +D   +          +  +F NR YE     RD
Sbjct: 87  FETLQKMRSTLQDEHASSL----AMYYDTPEKVFKQLSKDFEIATVFTNRDYEPYAKERD 142

Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           +++   L+   +  K+F D V+     ++      Y VYTPF+    +        ++  
Sbjct: 143 EVISSLLKDNDIEFKTFKDQVIFEKDEVVKGDGDPYVVYTPFKNKWKERFDTDKDLTIHY 202

Query: 180 PAIRLTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            +  L   +  S +P     D  F+      P  E +    L       +  Y + R+ P
Sbjct: 203 TSQHLNNLIEHSRLPNLSLSDMGFEKSSIEVP--EYDVTPTL-------IQNYEDTRNFP 253

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A  GTS L P+L  G +S R+   +   E  ++          + +ELIWREF+  ++  
Sbjct: 254 AQDGTSHLGPHLRFGTVSVRKMMKKAIAETNEI----------FWSELIWREFFMQILFH 303

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P     K F    ++IEW  +    + WK G TG+ ++DA MR+LNT G+MHNR+RM+ 
Sbjct: 304 FPH-TKDKAFRSKYDRIEWRNNEDEFEKWKNGETGYLLVDAGMRELNTTGYMHNRVRMLV 362

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DWR GE YF  +LLD +++SN G WQWAA +G D+ PYFRIFNP  Q  +
Sbjct: 363 ASFLCKHLLIDWRWGETYFAEKLLDYEMSSNVGNWQWAAGSGVDAAPYFRIFNPITQVDK 422

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FD Q  +I  W+PE +                   + NYP  +VDHK+A    L  Y  A
Sbjct: 423 FDKQKEYISKWIPEHD-------------------TDNYPEKMVDHKEARERCLKTYKEA 463


>gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC30]
 gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC10]
 gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC30]
 gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
           casseliflavus EC10]
          Length = 469

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/479 (35%), Positives = 252/479 (52%), Gaps = 26/479 (5%)

Query: 12  VWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           +W R DLR+ DN AL  A     ++ +++ VF    +Q+     S     + ++++    
Sbjct: 2   MWFRKDLRLEDNTALTEALASLQANDQLLCVFHLNDKQFLPDAPS---HDYFFSAVAHFI 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++  ++ +           ++ + L +   +   ++L++N        +RD  + + ++ 
Sbjct: 59  EAAKKQNLTIHLLTG-TLTEAFDQLFACYPEW--SQLYFNFDNRGYGRKRDLYITELVEQ 115

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ---NLVQADLRSLPVPAIRLT 185
           + I   SF+D  L  P  +       YK +TP+ K  IQ    + Q         A    
Sbjct: 116 KGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKHALDFEKAAHFND 175

Query: 186 GPVTPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P   +      +    +  D    +GE  A   L+ F ++++  Y + RDIP+I+GTS+
Sbjct: 176 APHFKAGTMLLAELIKNRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDIPSIKGTSR 235

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+LS G +S R+ W   +E      +   +G  ++L EL WR+FY  +   +P     
Sbjct: 236 LSPFLSFGQISIRKVWAACQE------MPSSTGKATFLKELAWRDFYHMIYFTHPEQ-KN 288

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              I     ++W KD   L  W+ G TG+PIIDAAMRQLN  GWMHNRLRMI ASFL KD
Sbjct: 289 YELIEKYRNMDWQKDEEALNKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIVASFLTKD 348

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGK+FD  GTF
Sbjct: 349 LLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKKFDKDGTF 408

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477
           I+ ++PEL  +P +++H P+   ++        L  +YPLPIVDH +A    L+ Y   
Sbjct: 409 IKQFVPELAQLPLKFVHEPYLMTNQEQADLQIVLGTDYPLPIVDHNEARKRALDLYSKI 467


>gi|90020376|ref|YP_526203.1| deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
           2-40]
 gi|89949976|gb|ABD79991.1| Deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
           2-40]
          Length = 483

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 166/491 (33%), Positives = 247/491 (50%), Gaps = 36/491 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           L+WL N+LR++DN AL+AA  ++DA  +V+  +I          I    + +++ SL   
Sbjct: 4   LLWLSNNLRLSDNPALHAAVDSADANGEVLPAYIKDTA--NPWPIQGAAAWWLHHSLAAF 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
             S+  KG V    +     D    +     Q ++  ++ ++ +E  EV+    + K   
Sbjct: 62  TNSIKNKGGVLSLFEG----DPATLVPELISQNKIDAVYLSQGFEPYEVQLQANIHKWCK 117

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           QH + CK F   +LL P + LN   + ++V+TP+ KA +        + +P    ++   
Sbjct: 118 QHNIECKRFAGHLLLNPDTHLNKQGKPFQVFTPYYKAALATHTIPRAKPIPSNLAKVWAA 177

Query: 188 -------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                                   +  +  GE+ A   LR+  ++K+  Y   RD PA+ 
Sbjct: 178 KKLPKSVALNKLKLLPNLNWADQFNSQWQPGEEGAHKNLREAIEDKIASYTRDRDFPAVD 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LS +L  G +SPRQ W ++  +       P      +L +L+WR+F   L+  +P 
Sbjct: 238 GTSLLSAHLRFGEISPRQIWQQVATQMDGEQCAP------FLRQLMWRDFSYALLHHWPH 291

Query: 301 VCMGKPFIPWTEKIEWNKD-----SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           +   + F    EK  W K      +  L AW+ G TG+PI+DA MRQL   GWMHNR+RM
Sbjct: 292 IP-QQAFKQQFEKFPWQKASNKNVAKQLHAWQTGTTGYPIVDAGMRQLWQTGWMHNRVRM 350

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I ASFL K L + W  G ++F   L+D DLA+N  GWQW A  G D+ PYFRIFNP +QG
Sbjct: 351 IVASFLTKHLRIHWHEGAKWFWDTLVDADLANNTAGWQWVAGCGADAAPYFRIFNPVLQG 410

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN----YPLPIVDHKKAC 467
           ++FD QG +I+ W+PEL  +P ++IHAP       L    +SL     YPLPIVDHK A 
Sbjct: 411 EKFDKQGEYIKTWVPELAALPAKFIHAPWLAPQDILQTAGISLGNNSTYPLPIVDHKYAR 470

Query: 468 HHTLNQYYAAK 478
              L  Y   K
Sbjct: 471 EAALAAYQQLK 481


>gi|251782896|ref|YP_002997199.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391526|dbj|BAH81985.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 474

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 165/483 (34%), Positives = 242/483 (50%), Gaps = 24/483 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLR+ D KAL  A   S +  + VF    EQ  Q    +R    + AS+L  
Sbjct: 2   VSVMWFRRDLRVEDQKALARAIA-SQSPTLCVFQFNQEQLSQPP--SRNQSAVVASVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ L +KGI           D I   +    Q    T +++N        RRD+   +  
Sbjct: 59  KEELKEKGIDLYVMHG----DLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWF 114

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + I   ++ D  L     I N + Q YK++TP+ +       +  +         L+ 
Sbjct: 115 RAKKINIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLPKETPVVVDLSRGNWLSL 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  + +           + +  +  + A   L  F   ++  Y   RD P+  GTS LS
Sbjct: 175 KIPQATLELIETLKDTTFNDVMTV--KEAKERLNHFVDNQLADYDTTRDFPSRCGTSFLS 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL +G++S R  +  + +          SG   +L EL WR+FY  +    P+      
Sbjct: 233 PYLRLGMVSIRTVYQAVSQA------PASSGQAVFLKELAWRDFYHMVYVANPNQ-KKLA 285

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  +EW+++    +AWK+G TG+PIIDAAM+QL   GWMHNRLRM+ ASFL KDL 
Sbjct: 286 IQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTKDLQ 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE YF  QL+D D ASN GGWQWAAS G D+VPYFRIFNP  QGKRFDP G FIR
Sbjct: 346 IDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIR 405

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LP L +VP  Y++ P    +         +  +YP P+VDH +     + +Y  AK++
Sbjct: 406 SYLPSLVSVPQTYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQRKRAIARYEWAKEK 465

Query: 481 SLL 483
           + +
Sbjct: 466 AQM 468


>gi|134291309|ref|YP_001115078.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
           vietnamiensis G4]
 gi|134134498|gb|ABO58823.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
           vietnamiensis G4]
          Length = 505

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 146/490 (29%), Positives = 229/490 (46%), Gaps = 33/490 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R+D R+ DN AL  A       V+ V++          +   Q  +++ SL ++
Sbjct: 12  PVVVWFRDDQRLADNPALTHALDTGH-PVVCVYVHDAAPKHGRAMGGAQRWWLHESLSKL 70

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L+  G      + +      E +  +        + +NR+Y   +   D  +++ L 
Sbjct: 71  DDALAAHGGSLILLRGNEH----EAITGFAAAIGAAMVVWNRRYAKAQTGTDASIKRDLI 126

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R I  S F+  +L  P ++       ++V++ + +A  ++        LP P+     P
Sbjct: 127 DRGIAVSTFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDF-FPPVPLPAPSHIRFFP 185

Query: 188 VTP---SNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDI 236
           V      ++    +   Q   P +  G        EQ A   L  F +  +  Y   RD 
Sbjct: 186 VPAHATPHVCTLRELELQPSAPDWAGGLRETWQCGEQAASDQLEAFLENSLSDYPTLRDF 245

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--------KSGAFSWLNELIWR 288
           PA + TS+LSPYL  G +S RQ W         +                  +L+E+ WR
Sbjct: 246 PAARATSRLSPYLRFGNISVRQVWYATLSAADAMRSARIVRGVDSKDGPLSKFLSEIGWR 305

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF  HL+  + +      F    + + W  D+  L+ W+ G TG+P++DA MR+L   GW
Sbjct: 306 EFSYHLLYHF-APLHQVNFRRQFDSMPWRDDAKSLRKWQTGRTGYPLVDAGMRELWHTGW 364

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RM+ ASFL K LL+DWR GE +F   L+D D ASN   WQW + +G D+ PYFRI
Sbjct: 365 MHNRVRMVAASFLSKHLLIDWRQGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRI 424

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVD 462
           FNP +Q ++FDP G + R W+PEL  +    +HAP +   +        L  +YP+PIVD
Sbjct: 425 FNPVLQAQKFDPHGDYTRRWVPELAQLSADTVHAPWAASREQLQRASVTLGRSYPMPIVD 484

Query: 463 HKKACHHTLN 472
           H+ A    L 
Sbjct: 485 HQCARARALE 494


>gi|28372347|dbj|BAC56984.1| cryptochrome 2 [Oryza sativa Japonica Group]
 gi|48716244|dbj|BAD23780.1| cryptochrome 2 [Oryza sativa Japonica Group]
 gi|215686763|dbj|BAG89613.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623271|gb|EEE57403.1| hypothetical protein OsJ_07585 [Oryza sativa Japonica Group]
          Length = 651

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/480 (28%), Positives = 219/480 (45%), Gaps = 28/480 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL +A    D  V+ VFI  P    Q         ++  SL  + 
Sbjct: 7   TVVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  +   ++E L         T+L YN  Y+   + RD  ++K L  
Sbjct: 65  QSLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSA 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  +SF+  +L  P  I + +   +  +  + +  ++  + A     P   + + G +
Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPG-L 180

Query: 189 TPSNIPRFFDYPFQAIDP----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                    D   ++              +  G +NA  +L +F    +  Y +      
Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSPYL  G +S R+ +  ++ + +    +  S A      ++  +  RE+ R+L
Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     K  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R
Sbjct: 301 CFNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK LL+ W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP +Q
Sbjct: 360 VIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 419

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
           G+++DP G ++R W+PEL  +PT++IH P             +L  NYP PIVD   A  
Sbjct: 420 GQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARE 479


>gi|322412229|gb|EFY03137.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 474

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 169/486 (34%), Positives = 243/486 (50%), Gaps = 30/486 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    +Q  Q    +R    + AS+L  
Sbjct: 2   VSVMWFRRDLRIEDQKALARAIA-SQSPTLCVFQFNQKQLSQPP--SRNQSAVVASVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ L ++GI           D I   +    Q    T +++N        RRD+   +  
Sbjct: 59  KEELKERGIDLYVMHG----DLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWF 114

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-- 184
           + + I   ++ D  L     I N + + YKV+TP+ +       +  +         L  
Sbjct: 115 RAKKINIHAYQDHYLHGSQEIKNQSGEYYKVFTPYYRVWQCLPKETPVVVDLSRGNWLSL 174

Query: 185 -TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            T   T   I    D  F  +  +     + A   L  F   ++  Y   RD P+  GTS
Sbjct: 175 KTPQATLELIETLKDTTFNDVMTV-----KEAKERLNHFVDNQLADYDTTRDFPSRCGTS 229

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSPYL +G++S R  +  + +          SG   +L EL WR+FY  +    P+   
Sbjct: 230 FLSPYLRLGMVSIRTVYQAVSQA------PASSGQAVFLKELAWRDFYHMVYVANPNQ-K 282

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                     +EW+++    +AWK+G TG+PIIDAAM+QL   GWMHNRLRM+ ASFL K
Sbjct: 283 KLAIQEAFRHLEWDENPATFKAWKEGQTGYPIIDAAMKQLRATGWMHNRLRMVVASFLTK 342

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR+GE YF  QL+D D ASN GGWQWAAS G D+VPYFRIFNP  QGKRFDP G 
Sbjct: 343 DLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGD 402

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FIR +LP L +VP +Y++ P    +         +  +YP P+VDH +     + +Y  A
Sbjct: 403 FIRSYLPSLVSVPQKYLYEPWKMPEALQESIACIIGKDYPHPLVDHAEQRKRAIARYEWA 462

Query: 478 KKQSLL 483
           K+++ +
Sbjct: 463 KEKAQM 468


>gi|172061140|ref|YP_001808792.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6]
 gi|171993657|gb|ACB64576.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6]
          Length = 500

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 241/496 (48%), Gaps = 23/496 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A ++++  +VW R+DLR+TD  AL  A   S   ++ V++          +      +
Sbjct: 1   MSAKSSVAPAIVWFRDDLRVTDQPALTRAVA-SGRPLVCVYVDDTGDGAGRALGGAARWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ +L  +  +L++ G      +     D+   ++          +++NR+Y   +   D
Sbjct: 60  LHGALAALDAALARHGGRLLLLRG----DAQREIERVVHDTGAAAVYWNRRYAQPQRDAD 115

Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLP 178
             L+  L+ R    +S + S+L  P  ++  A   ++V+T + +A+ +  LV A L    
Sbjct: 116 AALKASLKARGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRLVAAPLPEPE 175

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG---------EQNALHILRKFCKEKVYY 229
             A                    +   P +  G         E  A   L  F  E +  
Sbjct: 176 RIAFHPWPAAVRERALALNTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHESLAG 235

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RD P    TS+LSP+L  G +SPRQ W+ ++           +GA  +L+EL WRE
Sbjct: 236 YADTRDRPGESATSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEKFLSELGWRE 295

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F   L+  +P++     F    + + W  D   L+AW++G TG+P++DA MR+L T GWM
Sbjct: 296 FSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWM 354

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RM+ ASFLVK LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIF
Sbjct: 355 HNRARMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIF 414

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDH 463
           NP  QG++FDPQG ++R W+PEL  +    IHAP              L L+YP PIVDH
Sbjct: 415 NPVTQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWDASAAQLAAAGVRLGLDYPAPIVDH 474

Query: 464 KKACHHTLNQYYAAKK 479
             A    L+      K
Sbjct: 475 DGARRRALDALATLPK 490


>gi|322369279|ref|ZP_08043844.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
           DX253]
 gi|320551011|gb|EFW92660.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
           DX253]
          Length = 464

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 158/475 (33%), Positives = 240/475 (50%), Gaps = 17/475 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +H+ W R DLR+ DN+AL        + V+ VF+           +  +  F+ ++L  +
Sbjct: 1   MHVHWHRRDLRVADNRALSR-----GSPVLPVFVFDGAVL--SHAAPPRVSFMLSALESL 53

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++S  ++G      +        E +          ++ +NR Y      RD  +   L 
Sbjct: 54  RESYRERGGDLLVLRGDPR----EEIPRIAAAADADRVVWNRDYSGLAKERDADVRDALS 109

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I +  F D++L  PGSI  +    Y VYT F K        A   +     +     
Sbjct: 110 DAGIERRAFHDALLHTPGSITTNQGDYYSVYTYFWKKWRDGAKDAPFDAPDEIVVPDEVV 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                IP   D  F+  +   P  G + A  +L  FC++ VY Y + RD PA + TS+LS
Sbjct: 170 EEGIEIPTLADLGFEDPEAEIPPAGTEAARDLLSAFCEDDVYRYDKARDYPARESTSRLS 229

Query: 247 PYLSIGVLSPRQCWNRL-KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           P+L  G +  R+ W    + +              +  +L WREFY H++   PSV +  
Sbjct: 230 PHLKFGTVGIREVWEATERAKDAAESEDAAESVEEFQGQLAWREFYAHVLDDTPSVVVEN 289

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +  +   I W  D   ++AWK G TG+PI+DA MRQL    W+HNR+RMI ASFL KDL
Sbjct: 290 -YKDYQYDIAWRDDPDGVRAWKDGETGYPIVDAGMRQLREEAWVHNRVRMIIASFLTKDL 348

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR G +++  +L+D D A++NGGWQWAASTG D+ PYFR+FNPT QG+RFDP   +I
Sbjct: 349 LVDWREGYDWYRRKLVDHDTANDNGGWQWAASTGTDAQPYFRVFNPTTQGERFDPDAEYI 408

Query: 426 RHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + ++PEL +VP + +H        ++ +L+ +YP PIVDH +     +  +  A+
Sbjct: 409 KRFVPELADVPPKTVHEWTELDPDERRELAPDYPDPIVDHSERREMAITMFENAR 463


>gi|323127700|gb|ADX24997.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 474

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/483 (34%), Positives = 242/483 (50%), Gaps = 24/483 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLR+ D KAL  A   S +  + VF    EQ  Q    +R    + AS+L  
Sbjct: 2   VSVMWFRRDLRVEDQKALARAIA-SQSPTLCVFQFNQEQLSQPP--SRNQSAVVASVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ L +KGI           D I   +    Q    T +++N        RRD+   +  
Sbjct: 59  KEELKEKGIDLYVMHG----DLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWF 114

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + + I   ++ D  L     I N + Q YK++TP+ +       +  +         L+ 
Sbjct: 115 RAKKINIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLPKETPVVVDLSRGNWLSL 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  + +           + +  +  + A   L  F   ++  Y   RD P+  GTS LS
Sbjct: 175 KIPQATLELIETLKDTTFNDVMTV--KEAKERLNHFVDNQLADYDTTRDFPSRCGTSFLS 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL +G++S R  +  + +          SG   +L EL WR+FY  +    P+      
Sbjct: 233 PYLRLGMVSIRTVYQAVSQA------PASSGQAVFLKELAWRDFYHMVYVANPNQ-KKLA 285

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                  +EW+++    +AWK+G TG+PIIDAAM+QL   GWMHNRLRM+ ASFL KDL 
Sbjct: 286 IQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTKDLQ 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR+GE YF  QL+D D ASN GGWQWAAS G D+VPYFRIFNP  QGKRFDP G FIR
Sbjct: 346 IDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDGEFIR 405

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LP L +VP  Y++ P    +         +  +YP P+VDH +     + +Y  AK++
Sbjct: 406 SYLPSLVSVPQTYLYEPWKMPEALQESIACIIGEDYPHPLVDHAEQRKRAIARYEWAKEK 465

Query: 481 SLL 483
           + +
Sbjct: 466 AQM 468


>gi|86141641|ref|ZP_01060187.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella
           blandensis MED217]
 gi|85832200|gb|EAQ50655.1| deoxyribodipyrimidine photolyase-class I [Leeuwenhoekiella
           blandensis MED217]
          Length = 434

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/474 (30%), Positives = 225/474 (47%), Gaps = 48/474 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V++ W R DLR+ DN     A    +  V+ +FI   E   +      +  FI+ +L +
Sbjct: 3   TVNIFWFRRDLRLDDNVGFLEALK-GEHPVLPIFIFDKEILNELPEDDARVTFIFETLQK 61

Query: 68  VQKSLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  L +K G     +   +     + L+ Y    +V  +F N  YE   + RDK ++K 
Sbjct: 62  MRDELQEKHGSSIALYHGKSETIWKQLLEDY----KVDTVFTNHDYEPYALERDKKIKKL 117

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ + V  ++F D V+     ++      Y VYTP++    +         +   +  L 
Sbjct: 118 LEDQEVSFETFKDQVIFEKDEVVKGDGDPYVVYTPYKNKWQEVFDADKHLKIHYTSQYLE 177

Query: 186 GPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             +  S +P     D  F+      P  E              +  Y + R+ PA  GTS
Sbjct: 178 NLIEHSRLPNISLSDMGFKKSSIEIPDYEVT---------PTLIQNYEDTRNFPAQDGTS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            L P+L  G +S R+   +   E   +          + +ELIWREF+  ++  YP   +
Sbjct: 229 HLGPHLRFGTVSVRKMVKKAIAEKNTV----------FWSELIWREFFMQILYHYPE-TV 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    ++IEW  +    + WK+G TG+ ++DA MRQLN  G+MHNR+RM+ ASFL K
Sbjct: 278 NNAFRSKYDRIEWRNNKEEFEKWKKGETGYLLVDAGMRQLNKTGYMHNRVRMLVASFLCK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF  +LLD + +SN G WQWAA +G D+ PYFRIFNP  Q  +FD    
Sbjct: 338 HLLIDWRWGEAYFAEKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKDKK 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ ++PE +                   + +YP  +VDHK+A    L  Y AA
Sbjct: 398 YIKEFVPEFD-------------------TDDYPEKMVDHKEARERCLETYKAA 432


>gi|170017540|ref|YP_001728459.1| deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20]
 gi|169804397|gb|ACA83015.1| Deoxyribodipyrimidine photolyase [Leuconostoc citreum KM20]
          Length = 478

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 175/485 (36%), Positives = 242/485 (49%), Gaps = 27/485 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V +VW+R D RI DN AL AA  NSD+ V+ VFI  PEQ      S  QS F +AS   
Sbjct: 3   KVSIVWIRRDFRIQDNLALAAATENSDS-VLLVFIVDPEQIETT-ASLNQSAF-FASAKA 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            Q +L+ + I     + +      +   +      ++ L++N        +RD+ +    
Sbjct: 60  FQANLANENIHLLVLKGTPESQFEKLTAALP---EISDLYFNFDERGYGRQRDQQVAHHC 116

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR----SLPVPA 181
           Q    +   ++ D  L     I       Y+++TP+ K  I       ++    SL    
Sbjct: 117 QTTLGLKTHAYIDYNLHSANEIKKADGAGYQIFTPYFKRWITLPKPTPVKASVTSLQGKQ 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           +    P+             +  D      +GE  AL  L+ F +  +  Y  QRD+P +
Sbjct: 177 MANIEPLHLHQEGLLTSLINEKHDKQLVGQVGEAKALQTLKDFIQSHLSEYDTQRDLPFL 236

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS YL  G ++ R  +  +  E          G  +++ EL WR++Y  + A  P
Sbjct: 237 DATSHLSRYLRTGEIAIRTIYQAVINE------PESEGQQTFIKELAWRDYYNMIYAMNP 290

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +   P  +KI W  + +    W+ G TGFPI+DAAMRQLN  GWMHNRLRMI AS
Sbjct: 291 QQNT-QSLRPEFQKIAWRNNHNDFLLWQTGQTGFPIVDAAMRQLNQTGWMHNRLRMIVAS 349

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDLL+DWR GE+YF  QLLD D ASN GGWQWAASTG DSVPYFRIFNPT Q ++FD
Sbjct: 350 FLTKDLLIDWRWGEQYFHDQLLDYDPASNIGGWQWAASTGTDSVPYFRIFNPTRQSQKFD 409

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473
           P G FI+ ++PEL+ +    IH P    D         L  +YP P+V HK+A    +  
Sbjct: 410 PDGKFIKQFVPELSQITNDKIHEPQLLTDLEQKEFQVTLDKDYPKPMVTHKQARLRAIEV 469

Query: 474 YYAAK 478
           Y  +K
Sbjct: 470 YEQSK 474


>gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301]
 gi|118595452|sp|P05327|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301]
          Length = 484

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/479 (34%), Positives = 230/479 (48%), Gaps = 23/479 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR++DN  L AA   S A++I +F   P+  +   ++  +  ++   L ++Q+
Sbjct: 6   LFWHRRDLRLSDNIGLAAARAQS-AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQ 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              Q G      Q     D    +     Q +   +++N+  E     RD  +   L+  
Sbjct: 65  RYQQAGSRLLLLQG----DPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLPVPAIR 183
            I      D +L  P  IL+ +   Y VY PF K                L  L    + 
Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELVDLSPEQLT 180

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              P+  S +P      F   D  FP   GE  A+  L++FC   +  Y  QR+ PA  G
Sbjct: 181 AIAPLLLSELPTLKQLGFDW-DGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAG 239

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           TS LSP L  G +  RQ W             + ++    W  EL WREFY+H +  +PS
Sbjct: 240 TSGLSPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPS 299

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G P+    ++  W     L  AW Q  TG+PI+DAAMRQL   GWMHNR  MI ASF
Sbjct: 300 LADG-PYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASF 358

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L KDL++DWR GE++FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q K+FD 
Sbjct: 359 LTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDA 417

Query: 421 QGTFIRHWLPELNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
             T+I+ WLPEL +V P   I    + + +      YP PIV+H          Y   K
Sbjct: 418 TATYIKRWLPELRHVHPKDLISGEITPIGRR----GYPAPIVNHNLRQKQFKALYNQLK 472


>gi|302664116|ref|XP_003023694.1| hypothetical protein TRV_02203 [Trichophyton verrucosum HKI 0517]
 gi|291187700|gb|EFE43076.1| hypothetical protein TRV_02203 [Trichophyton verrucosum HKI 0517]
          Length = 565

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 170/486 (34%), Positives = 237/486 (48%), Gaps = 43/486 (8%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A     + +  +I ++I +PE    H  S  +  FI  +L  
Sbjct: 100 VHWFKQDLRLQDNRSLHRAYSFARDHNIPLICLYIFSPEDLTAHLCSPPRVDFILRTLAT 159

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  LS+K I                +   C       LF N +YE++E+RR+  L +  
Sbjct: 160 LKSELSKKDIPLYMESMERRKRIPIRIVELCKTWGANHLFANIEYEVDELRREAKLTRLC 219

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRL 184
             + I   + DD+ ++ PG +     + Y VYTP+ ++ +  L Q    L  +  PA+  
Sbjct: 220 TTQGIRFDTEDDTCVVAPGELTTQQGKQYAVYTPWYRSWVAYLKQHPENLELVDAPAVNA 279

Query: 185 TGP------------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                              N  +  +   +    M+P GEQ A   LR+F  EK   Y  
Sbjct: 280 GDARKHFEDLFDSAVPIAPNQMKLSEAEQERFKKMYPEGEQEATRRLREFLSEKGKQYRS 339

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD  + Q TS LSPY S G LS R        +   L+I   S                
Sbjct: 340 KRDFMSSQITSVLSPYFSCGALSARTAPFIEAMKLCGLVITDVSS--------------- 384

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                     M K F P    +EW  DS    AW +G TGFPI+DAAMRQL    WMHNR
Sbjct: 385 ---------SMNKCFKPEFTDLEWGYDSTQFDAWCEGKTGFPIVDAAMRQLKHCAWMHNR 435

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI +SFL KDLL+DWR GE++FM  L+DGD ASN+GGW + +STG D  PYFRIFNP 
Sbjct: 436 TRMIVSSFLSKDLLIDWRRGEQFFMLHLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPL 495

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-YPLPIVDHKKACHHTL 471
            Q +RFDP G +IRHW+PEL +V    IH P+    +     N YP PIV+H ++    L
Sbjct: 496 RQSERFDPDGDYIRHWVPELRDVEGSAIHDPYGRGAEEIAEKNGYPRPIVNHTESRERAL 555

Query: 472 NQYYAA 477
            +Y  A
Sbjct: 556 EKYKKA 561


>gi|163756034|ref|ZP_02163150.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
 gi|161323908|gb|EDP95241.1| deoxyribodipyrimidine photolyase-class I [Kordia algicida OT-1]
          Length = 433

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/468 (33%), Positives = 224/468 (47%), Gaps = 47/468 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN  LY A  NS  KVI +FI   +   +      +  FIY  L ++  
Sbjct: 7   LFWHRRDLRIEDNIGLYHAL-NSGKKVIPLFIFDSDILEKLPKDDARVTFIYEELEKINT 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129
           +L                  +E L+    +  ++ ++ N  YE   + RDK + + L   
Sbjct: 66  TLQSHDASILVKHGKP----LEVLEEIIGKHEISAVYTNHDYEPYAIARDKEVGELLASK 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  K++ D V+     ++      Y +YTP+ K  +  L + D  S+   +        
Sbjct: 122 NIEFKTYKDQVIFERNEVVKADGDPYIIYTPYSKKWLDKLTKNDYTSVDCASYYKNYAKK 181

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-YYYVEQRDIPAIQGTSQLSPY 248
             N P   D  F A            + +L     E +   Y + R+ PAI+GTS+LSP+
Sbjct: 182 SFNFPSLKDIGFTASS----------IKVLPYTMAENMIDNYEDTRNFPAIEGTSRLSPH 231

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G +S R+C     +   ++          +L EL+WREF+  ++  +P   +   F 
Sbjct: 232 LRFGTISVRKCVQNGLQSENNV----------FLKELVWREFFMQILWHFPK-SVTNNFK 280

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              + I+W  D    +AW +G TG+P++DA MR+LN  G+MHNR+RMITASFL K LL+D
Sbjct: 281 SKYDGIKWRNDEDEYKAWCEGKTGYPLVDAGMRELNESGYMHNRVRMITASFLCKHLLID 340

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W+ GE YF  +LLD DLA N G WQW A TG DS PYFRIFNPT Q K+FD   T+I  W
Sbjct: 341 WKWGEAYFAKKLLDFDLAQNVGNWQWVAGTGCDSSPYFRIFNPTSQIKKFDKDHTYINKW 400

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
                                +   L YP PIV+HK A    L+ Y +
Sbjct: 401 -------------------ASDYQELTYPSPIVEHKFARERCLSTYKS 429


>gi|120436173|ref|YP_861859.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803]
 gi|117578323|emb|CAL66792.1| deoxyribodipyrimidine photo-lyase [Gramella forsetii KT0803]
          Length = 435

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 146/475 (30%), Positives = 223/475 (46%), Gaps = 47/475 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  V++ W R DLR+ DN  L AA    D  V+ +FI   E   +      +  FI+  L
Sbjct: 2   SKKVNIFWFRRDLRLDDNAGLKAALQ-GDLPVLPIFIFDHEILEKLPEDDARVTFIFEEL 60

Query: 66  LQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
            +++ +L +  G          +    +   +      + K+F NR YE     RD+ + 
Sbjct: 61  QEMRSTLQEDHGSSIAI----FYRTPEKVFKNLISDYEIEKVFTNRDYEPYAKERDQKIA 116

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAI 182
           K L  + +  + F D V+     ++      Y VYTP++    +   + DL        +
Sbjct: 117 KILSGNDIEFEDFKDQVIFEKDEVVKKDGDPYVVYTPYKNLWREKFSKIDLDFHYTTRYM 176

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                 +        D  F+      P           K     +  Y ++RD PA++GT
Sbjct: 177 DNFYQNSRLPNLSLADIGFKKSSLKVPD---------YKVTPGLIKDYKDKRDYPAVEGT 227

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+L P+L  G +S RQ      EE             ++L+EL+WREF+  ++  +P   
Sbjct: 228 SRLGPHLRFGTVSVRQMIRDADEE----------SNKTFLDELVWREFFMQILFHFPDTV 277

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + F    ++IEW  +    + WKQG TG+P++DA MRQLN  G+MHNR+RM+  SFL 
Sbjct: 278 T-EAFKKKYDRIEWRNNKDEFELWKQGKTGYPLVDAGMRQLNESGFMHNRIRMLVGSFLC 336

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE YF  +LLD +++SN G WQW A +G D+ PYFRIFNPT Q ++FD   
Sbjct: 337 KHLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIEKFDKDK 396

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +I+ W+PE                     + +YP  +VDHK+A    L  Y  A
Sbjct: 397 EYIKEWVPEFG-------------------TDDYPEKMVDHKEARERALKTYKEA 432


>gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
 gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
          Length = 486

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 138/490 (28%), Positives = 230/490 (46%), Gaps = 31/490 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLRI D++ LY A     A +I  +     Q++            +  F+  S+
Sbjct: 7   LIWYRNDLRIHDHEPLYQAIKQG-ALIIPFYCFDIRQFKTTSFGFPKTGNFRGQFLLESV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++KSL   G      Q        + +     Q  +  ++++ +    E   +  +EK
Sbjct: 66  TDLKKSLQDLGSNLIIRQG----YPEKIIPELIKQLEIDAVYFHEEVTSEETDIENTVEK 121

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   V  K F  + L     +     ++ +V+T FRK + +N     +   P   +R 
Sbjct: 122 ALKPLNVTFKGFWGATLYHWDDLPFEVSKLPEVFTSFRKKVEKNSTVNPILISPR-KLRS 180

Query: 185 TGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKV--YYYVEQRD- 235
              +   N+P   +   +           F  GE   +  L  +  E+     Y E R+ 
Sbjct: 181 LPDIEVGNVPSLEELELEKPKYDSRGVLEFKGGETEGIQRLNNYFWERNCLKEYKETRNG 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ SP+L+ G LSPR  +  + +++ +  IK  S  +  + EL+WR+++R + 
Sbjct: 241 MLGADYSSKFSPWLANGCLSPRYIYEEV-QKYEEKRIKNNS-TYWLIFELLWRDYFRFIS 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A + +    +  +   + I W +D    + W++G TG+P++D  MR+L   G+M NR R 
Sbjct: 299 AKHGNKIFYQSGLQGVD-IPWKEDQERFKLWQEGNTGYPLVDGNMRELAATGFMSNRGRQ 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR FN   Q 
Sbjct: 358 NVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQS 416

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K +DP+G +I+HWLPEL  +P Q IH P     +        + +NYP P+VD  K+   
Sbjct: 417 KDYDPKGEYIKHWLPELKMIPGQKIHEPWKLSQEEQKRYNVRIGVNYPRPVVDFFKSVKA 476

Query: 470 TLNQYYAAKK 479
               Y AA K
Sbjct: 477 NEKMYNAAIK 486


>gi|255581443|ref|XP_002531529.1| DNA photolyase, putative [Ricinus communis]
 gi|223528846|gb|EEF30848.1| DNA photolyase, putative [Ricinus communis]
          Length = 640

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/492 (27%), Positives = 227/492 (46%), Gaps = 26/492 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA    D  ++ VFI  P++  Q         ++  SL  + 
Sbjct: 6   TIVWFRRDLRIEDNPALAAAAR--DGCILPVFIWCPQEEGQFYPGRVSRWWLKQSLAHLG 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL   G      +  +   ++  L         TK+ +NR Y+   + RD  ++++L  
Sbjct: 64  HSLKSLGAELLLIKTHS---TLAALLDCVNVIGATKVVFNRLYDPVSLVRDHNIKEKLVE 120

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  +S++  +L  P  I + +   +  +  +    +   ++      P   +     V
Sbjct: 121 LGISIQSYNGDLLYEPWEIYDESGHAFMTFDQYWDKCLHMQMEPVSHLPPWRLVPAAETV 180

Query: 189 TPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              ++      D   ++ + +    +  G  NA   L +F ++ +  Y ++R       T
Sbjct: 181 NSCSVEELGLEDEAEKSSNSLLGRAWSPGWSNADKALAEFVEQHLVNYSKKRLEVGGNST 240

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSPYL  G LS R+ ++ ++ +      +     +     +L  +  RE+ R+L   +
Sbjct: 241 SLLSPYLHFGELSVRKVFHCVQMKQLLWAKEENSVGRESVTLFLKSIGLREYSRYLCFNF 300

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     + F+       WN +    +AW+QG TG+P++DA MR+L   GW+HN++R+I +
Sbjct: 301 P-YTHERSFLSNLRLFPWNANQAHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVS 359

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK LL+ WR G +YF   LLD D+ S+  GWQ+ +    D     R+ +P IQG +F
Sbjct: 360 SFAVKALLLPWRWGMKYFWDTLLDADMESDILGWQYISGGLPDGHELERLDSPEIQGSKF 419

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH--- 469
           D  G ++R WLPEL  +PT++IH P             +L  NYP PIV+   A      
Sbjct: 420 DADGEYVRQWLPELARMPTEWIHHPWDAPLAVLRAAGVELGQNYPKPIVELDLARERLTE 479

Query: 470 TLNQYYAAKKQS 481
            + + +    ++
Sbjct: 480 AIFRMWETAARA 491


>gi|224063235|ref|XP_002301054.1| predicted protein [Populus trichocarpa]
 gi|222842780|gb|EEE80327.1| predicted protein [Populus trichocarpa]
          Length = 681

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 141/491 (28%), Positives = 224/491 (45%), Gaps = 25/491 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        V+AVF+  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVAVFVWAPEEEGHYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G      + +   DS+  L         T+LF+N  Y+   + RD   +
Sbjct: 60  LAHLDSSLRSLGTSLVTKRST---DSVSTLLEVIKSTGATQLFFNHLYDPLSLVRDHRAK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    +  +SF+  +L  P  + +   + +  +  F    +      +   LP   I 
Sbjct: 117 EVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPLLPPKRII 176

Query: 184 L-TGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                  PS +  F D   +  + +    +  G  NA   L  F    +  Y + R    
Sbjct: 177 SGDASRCPSEMLVFEDELEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSKNRRKAD 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R+L
Sbjct: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYL 296

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GW+H+R+R
Sbjct: 297 SFNHP-YSHERPLLGHLKFFPWVVDGGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           ++ ASF VK L + WR G +YF   LLD DL S+  GWQ+   T  D   + RI NP  +
Sbjct: 356 VVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQFE 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKKA 466
           G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  K 
Sbjct: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKV 475

Query: 467 C-HHTLNQYYA 476
                L++ + 
Sbjct: 476 RLEEALSEMWQ 486


>gi|220913214|ref|YP_002488523.1| deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus
           A6]
 gi|219860092|gb|ACL40434.1| Deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus
           A6]
          Length = 475

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 160/481 (33%), Positives = 237/481 (49%), Gaps = 25/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVWLR+DLR+ DN AL  A H   A +  V++   E      +      +++ SL  +
Sbjct: 7   TSLVWLRDDLRLDDNPALSEAAHLG-APMTVVYVLDEESPGVRPLGGASRWWLHHSLAAL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L  KG      +      + + + S   Q     LF+NR+Y   E   D  L++   
Sbjct: 66  AAVLEAKGSRLVLRRGK----AADVISSLAAQTHAGHLFWNRRYGGPERDIDAGLKEWAA 121

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIR 183
            + +   SF  ++L  P +I   A   YKVY+PF +A +      D     + LP PA  
Sbjct: 122 GNGIEASSFQANLLFEPWTIKTGAGGPYKVYSPFWRACLAAGDIRDPLDIPKDLPEPAAS 181

Query: 184 LTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             G     ++  +   P        +   +  GE+ A+  L  F    +  Y   R+IP 
Sbjct: 182 GRGLPASDSLGSWKLLPTSPDWSGGLAETWVPGEKGAVDRLTDFLDGPIEDYGTGRNIPG 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            +GTS+LSPYL  G +SP + W  ++      +    +    + +EL WREF  HL+   
Sbjct: 242 TEGTSRLSPYLRFGEVSPFRVWREIRRRHPRQVP---ADVGIFRSELGWREFNWHLLYHN 298

Query: 299 PSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           P +   + F P  EK EW       L AW+QG TG+P++DA MRQL   GWMHNR+RM  
Sbjct: 299 PELAT-RSFRPDFEKFEWASLSRKELAAWQQGRTGYPLVDAGMRQLWQTGWMHNRVRMAA 357

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVK+LL DWR+GE++F   L+D D A+N   WQW A +G D+ PY+RIFNP  Q K+
Sbjct: 358 ASFLVKNLLTDWRVGEQWFWDTLVDADAANNPANWQWVAGSGADASPYYRIFNPVTQSKK 417

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FD  G ++R ++PE+  +  + IH P +          YP P+V+  ++    L+ Y   
Sbjct: 418 FDAGGDYLRRFIPEIAGLEGKAIHEPWTAE-----PDGYPQPLVELPESRERALDAYQKL 472

Query: 478 K 478
           K
Sbjct: 473 K 473


>gi|115352268|ref|YP_774107.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria AMMD]
 gi|115282256|gb|ABI87773.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia ambifaria
           AMMD]
          Length = 525

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/495 (31%), Positives = 241/495 (48%), Gaps = 23/495 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A ++++  +VW R+DLR+TD  AL  A   S   ++ V++          +      ++
Sbjct: 27  SAKSSVAPAVVWFRDDLRVTDQPALTRAVA-SGRPLVCVYVDDTGDGAGRALGGAARWWL 85

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + +L  +  +L++ G      +     D+   ++          +++NR+Y   +   D 
Sbjct: 86  HGALAALDAALARHGGHLLLLRG----DAQREIERIVHDTGAAAVYWNRRYAQPQRDADA 141

Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---- 176
            L+  L+ R    +S + S+L  P  ++  A   ++V+T + +A+ ++            
Sbjct: 142 ALKASLKARGLEVESSNGSLLNEPWEVMTGAGTPFQVFTAYWRAVRRDRTVMAPLPEPER 201

Query: 177 ---LPVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
               P PA    R       +  P   D+     D      E  A   L  F    +  Y
Sbjct: 202 IAFHPWPAAVRERALALDALALRPHAPDWAGGLRDEWPAPDEAGAHARLDAFVHASLAGY 261

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD P    TS+LSP+L  G +SPRQ W+ ++           +GA  +L+EL WREF
Sbjct: 262 ADTRDRPGEPATSRLSPFLRFGNVSPRQVWHAVQGATQAGGAACAAGAEKFLSELGWREF 321

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P++     F    + + W  D   L+AW++G TG+P++DA MR+L T GWMH
Sbjct: 322 SHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMH 380

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFN
Sbjct: 381 NRVRMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIFN 440

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QG++FDPQG ++R W+PEL  +    IHAP              L L+YP PIVDH 
Sbjct: 441 PVTQGRKFDPQGEYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIVDHD 500

Query: 465 KACHHTLNQYYAAKK 479
            A    L+      K
Sbjct: 501 GARRRALDALATLPK 515


>gi|84684767|ref|ZP_01012667.1| deoxyribodipyrimidine photolyase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667102|gb|EAQ13572.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2654]
          Length = 475

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 157/493 (31%), Positives = 241/493 (48%), Gaps = 38/493 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + S  ++W R DLR++D+ AL+AA +     VI +FI         G+ A     +   L
Sbjct: 2   SASTVILWFRRDLRLSDHPALWAAANAG--LVIPLFIRDQSV---DGLGAAAKWRLGEGL 56

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
               ++L  +G+     + +  D     L     +   T++ ++R Y+   + RD  ++ 
Sbjct: 57  RVFGEALEDRGLKLILRRGNARD----VLREVIEETGATEVHWSRLYDPEAIERDTDVKS 112

Query: 126 RLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   I  +S    ++  P ++       YKVY+PF +A+    V       P+P   L
Sbjct: 113 ALKEAGIVAESHPGHLIFEPWTVETQTGGPYKVYSPFWRAVKDRDVDE-----PLPTPDL 167

Query: 185 TGPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           TGP +  +     D+   A        +      GE+ A   L  F  +K+  Y   RD+
Sbjct: 168 TGPESWPDSDDLADWALGADMNRGAGVLAKYCNPGERAATSRLGSFVAQKIDAYKADRDL 227

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA   TS++S YL+ G +SPRQ W          +   K+GA  +L E++WREF  HL+ 
Sbjct: 228 PAEDATSRMSEYLTYGEISPRQLW----AAGARAMDAGKAGAEHYLKEVVWREFAYHLLY 283

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            +P +     +    +   W +D  L  ++AWKQG TG P +DAA+R++   G+MHNR R
Sbjct: 284 HFPQMLTEN-WREGWDDFPWREDERLAEVKAWKQGRTGVPFVDAALREMYVTGYMHNRAR 342

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI AS+L K  ++ WR+G+ +F   L D D ASN  GWQW A  G D+ PYFR+FNP  Q
Sbjct: 343 MIVASYLTKHCMIHWRVGQAWFDDCLTDWDPASNAMGWQWVAGCGPDAAPYFRVFNPETQ 402

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYP-LPIVDHKKACH 468
           G++FDP+GT+ + W+ E    P +         P SW  K +   NYP  P+V  K+   
Sbjct: 403 GEKFDPKGTYQKRWIAEGQTSPPETATDYFEAIPRSW--KMEPGGNYPREPVVGLKEGRE 460

Query: 469 HTLNQYYAAKKQS 481
             L  Y A  K S
Sbjct: 461 AALAAYEARPKAS 473


>gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
 gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
          Length = 467

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/480 (34%), Positives = 239/480 (49%), Gaps = 20/480 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   L W R DLR+ DN  L AA      +V+ VF+  P +     ++  +  F+  SL 
Sbjct: 1   MGPWLFWHRRDLRLADNLGL-AAVSAITPEVMGVFVLDPAELEHPTMAPARRWFLLESLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+   Q G      +     + +E L     Q     + +NR  E    +RD+ L   
Sbjct: 60  ELQQRWRQAGSQLLLLEG----NPVELLPRLAQQLGAAGVAWNRDVEPLVRQRDRELAAA 115

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   V   +  D +L+PP  +       Y+VY P+ ++  +      + +       L 
Sbjct: 116 LKAIGVRVAADWDQLLVPPEQLKTGGGDPYRVYGPYWRSWEKQPKAKPVPAPSELKALLK 175

Query: 186 GPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +  S +P   + P +  +         GE  AL  L  F    + +Y E R++P  +G
Sbjct: 176 PDL--SGLPVLNEVPVEPWEGADLCPCRPGETAALEQLEHFAARAMEHYCEGRNLPGDEG 233

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPS 300
           TS LS  L  G LSPR  W    + +       +  + + W  EL WREFY+  +  +P 
Sbjct: 234 TSTLSAALRAGSLSPRTAWAASLDVWSHCRSDEQRQSVTVWQQELAWREFYQQALFHFPE 293

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +  G P+ P   +  W  D   L+AW+ G TG PI+DAAMRQL   G+MHNR RMI ASF
Sbjct: 294 LADG-PYRPQWRQFPWEDDPVRLKAWQDGLTGVPIVDAAMRQLVQTGFMHNRCRMIVASF 352

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDL+ DWR GE +FM+  +DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q  +FDP
Sbjct: 353 LVKDLICDWRHGEAFFMAHEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPFTQASKFDP 411

Query: 421 QGTFIRHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + T+IR WLPEL ++ T+  I      L++      YP PIV+HK+        Y A  +
Sbjct: 412 EATYIRRWLPELAHINTKDLISGDIGALERR----GYPEPIVNHKQQQARFKALYAALPR 467


>gi|254247729|ref|ZP_04941050.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
 gi|124872505|gb|EAY64221.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
          Length = 531

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 149/479 (31%), Positives = 233/479 (48%), Gaps = 23/479 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A  + +  +VW R+DLR+TD  AL  A   S   ++ VFI          +      ++
Sbjct: 41  SAKPSAAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFIDDTGAGAGPALGGAARWWL 99

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL ++  +L++ G      +     D+   ++          +++NR+Y   +   D 
Sbjct: 100 HGSLARLDTALARHGGRLLLLRG----DAQREIERVVGDTGAAAVYWNRRYAQPQRDADA 155

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L+  L+ R +  +S + S+L  P  +L  +   Y+V+T + +A  ++   A     P  
Sbjct: 156 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPER 215

Query: 181 AIRLTGPVT----------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                 P             +  P   D+     D      E  AL  L  F    +  Y
Sbjct: 216 IAFHPWPQAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTTSLAGY 275

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD P    TS+LSP+L  G +SPRQ W+ ++           + A  +L+EL WREF
Sbjct: 276 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAVYAAHADKFLSELGWREF 335

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T GWMH
Sbjct: 336 SYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 394

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFN
Sbjct: 395 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 454

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           P  QG++ DP G ++R W+PEL  +    IHAP              L ++YP P+V+H
Sbjct: 455 PVAQGQKCDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGIDYPAPLVEH 513


>gi|328544427|ref|YP_004304536.1| Deoxyribodipyrimidine photolyase family [polymorphum gilvum
           SL003B-26A1]
 gi|326414169|gb|ADZ71232.1| Deoxyribodipyrimidine photolyase family [Polymorphum gilvum
           SL003B-26A1]
          Length = 480

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 160/485 (32%), Positives = 234/485 (48%), Gaps = 25/485 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQ 67
             LVW R DLRI DN AL+ A       V+ VF+         H + A    +++ SL  
Sbjct: 2   TTLVWFRQDLRIADNPALFEAAARG--SVLPVFVLDEGPGDNTHPLGAASRWWLHHSLEA 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L +  ++          D    +        V  + +NR YE + VRRD  L+  L
Sbjct: 60  LARDLGRLVLL--------HGDPQRLIPELARAAGVGAVHWNRCYEPHAVRRDTALKAAL 111

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               V  +SF+ ++L  P  +       +KV++P+ +A +   V   L   P   I    
Sbjct: 112 IAAGVEVRSFNAALLNEPWELETKTGGPFKVFSPYWRAALARPVATPLPRPPRLEIAAGQ 171

Query: 187 PVTPSNIPRF----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                +  R      D+     D ++  GE  A   L  F +  +  Y   RD P +   
Sbjct: 172 AGDRLDDWRLRPTAPDWAAGWRD-LWHPGEAGAAERLEHFLEAGLDGYATLRDRPDLSHV 230

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP+L  G +SPRQ   R +          +  A  +L E+ WREF  HL+  +P + 
Sbjct: 231 SRLSPHLHFGEVSPRQVVARTR-FAAGRTPGLERDADKFLAEIGWREFSHHLLYHFPRLP 289

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + +    +   W   S  L  W++G TG+P++DA MR+L   G+MHNR+RM+ ASFLV
Sbjct: 290 E-RNWKSTFDAYPWRDSSGDLAVWQRGQTGYPMVDAGMRELWATGYMHNRVRMLAASFLV 348

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L +DWR+GE +F   L+D DLA+N  GWQW A +G D+ PYFRIF+P  QG+RFDP G
Sbjct: 349 KHLRLDWRLGEAWFRDTLVDADLANNAAGWQWVAGSGADAAPYFRIFSPVGQGRRFDPGG 408

Query: 423 TFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            ++R W PEL  +P  ++HAP             +L   YP PIVDH  A    L  Y A
Sbjct: 409 AYVRRWCPELARLPDDHVHAPFDAPAVVLKAAGVELGRTYPHPIVDHAAARAEALAGYEA 468

Query: 477 AKKQS 481
            ++  
Sbjct: 469 VRRAG 473


>gi|257053940|ref|YP_003131773.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940]
 gi|256692703|gb|ACV13040.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940]
          Length = 470

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 157/476 (32%), Positives = 236/476 (49%), Gaps = 15/476 (3%)

Query: 9   VHLVWLRNDLRITDNKALY-AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + + W R DLR+ DN+AL       +D +V+ VF+  P           +   +  ++  
Sbjct: 1   MRIHWHRRDLRLADNRALAGDGIETNDEQVLGVFVFDPAVLE--HAGPARVVALLDAVAA 58

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++++  ++G            D +  L +         + +NR+Y      RD  +   L
Sbjct: 59  LREAYRERGSDLVLASG----DPVAELPTLATTYGAELVTWNREYSPLARDRDAAVRASL 114

Query: 128 QHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               I + +  D+VL  PG+I  +    Y+V+T F +        A +      ++    
Sbjct: 115 DDAGIGRDAVHDAVLHEPGTIRTNDGDPYQVFTYFWRKWRDRRKSAPIAPPDADSLGDVT 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGE-QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             TP  +P + D   +      P      A   L  FC   +Y Y ++RD PA   TS+L
Sbjct: 175 DDTP--VPTWADLDVEEPTASIPGVTPAAARERLDSFCAGDIYRYEDRRDYPAEDCTSRL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           S +L  G +  R  +   +           ++    + ++L WREFY  ++ F PSV   
Sbjct: 233 SHHLKYGTIGIRAVYAATERACERGETADDRASVREFQSQLAWREFYTQVLWFNPSVVTE 292

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F  +   IEW  D   LQAWK G TG+PI+DA MRQL T  +MHNR+RMI ASFL KD
Sbjct: 293 N-FKSYENPIEWRTDPEGLQAWKDGETGYPIVDAGMRQLETAAYMHNRVRMIVASFLTKD 351

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR G ++F ++L+D D A++NGGWQWAASTG D+ PYFRIFNP  QG+R+DP   +
Sbjct: 352 LLIDWREGYDWFRAKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAAY 411

Query: 425 IRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR ++PEL+ VP   IH+ H      +   + +YP PIVDH       L  +  A+
Sbjct: 412 IREYVPELDGVPADVIHSWHELDPGAREMHAPDYPAPIVDHADRREQALAMFERAR 467


>gi|304571342|dbj|BAJ15789.1| cryptochrome2 [Cardamine alpina]
          Length = 591

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 136/485 (28%), Positives = 221/485 (45%), Gaps = 24/485 (4%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + +SL   G
Sbjct: 1   DLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQSLSHLSQSLKALG 58

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKS 135
                 +  N   ++  +         TK+ +N  Y+   + RD  ++++L    I  +S
Sbjct: 59  SELTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
           F+  +L  P  I     +    ++ + K  ++  +++ +   P   + +T          
Sbjct: 116 FNGDLLYEPWEIYCEKGKPLTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACS 175

Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             +   +          +   +  G  NA  IL +F ++++  Y +         TS LS
Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235

Query: 247 PYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           PYL  G +S R+ +   R+K+       +    A  +L  +  RE+ R+L   +P     
Sbjct: 236 PYLHFGEISIRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYLCFNFP-FTHE 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +       W+ D    +AW+QG TG+P++DA MR+L   GWMHNR+R+I +SF VK 
Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKF 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP IQG +FDP+G +
Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414

Query: 425 IRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR WLPEL  +P+++IH P             +L  NY  PIVD   A           +
Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474

Query: 479 KQSLL 483
           +  ++
Sbjct: 475 EAQIM 479


>gi|298291394|ref|YP_003693333.1| deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
 gi|296927905|gb|ADH88714.1| Deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
          Length = 479

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/489 (31%), Positives = 239/489 (48%), Gaps = 23/489 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A    S  LVW R+DLR+ DN AL+AA   S   ++ +++   E      +      +
Sbjct: 1   MPA----SPALVWFRDDLRLADNPALHAA-QRSGRPLVLLYLLDEESEGIRPLGGAARWW 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L  V +++  KG      +        E + +   + +   +++NR+Y   E+  D
Sbjct: 56  LGRALASVTEAIEAKGGQLILRRGKAG----EVVPAVAAEAKAGAIYWNRRYGAAEIAVD 111

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---- 175
             L+  L  + +  +SF+ S+L  P ++   +   +KV+ PF +   Q+ ++   R    
Sbjct: 112 AALKTELAQKGLMVESFNGSLLHEPWTVKTQSGGPFKVFGPFYRNAAQHDIRRPARVGSH 171

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                             P   D+    +   +  GE      L  F    +  Y   RD
Sbjct: 172 WHFAETPAGDELRDWKLEPTTPDW-AGGLRESWIPGEDGGRAALAAFVDGGLRSYAAGRD 230

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P ++ TS+LSPYL  G LSP+Q    ++    D      +    +++EL WREF  HL+
Sbjct: 231 RPDMEHTSRLSPYLRFGHLSPQQVLAAVR-HAADAGEVRGTDVEKFVSELYWREFSYHLL 289

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P +     F    +  EWN+D+ + +AW++G TG+P+IDA MRQL   GWMHNR+RM
Sbjct: 290 FHFPDLAQVN-FNRRFDGFEWNQDAKIERAWQRGLTGYPLIDAGMRQLWQTGWMHNRVRM 348

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL+K  LVDWR GE +F   L+D D A+N   WQW A +G D+ PYFRIFNP  QG
Sbjct: 349 VAASFLIKHALVDWRRGEVWFWDTLVDADPANNAASWQWVAGSGADAAPYFRIFNPVTQG 408

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHH 469
           ++FDP G ++R ++PEL  +P   IH P              L   YP PIVDH  A   
Sbjct: 409 EKFDPDGAYVRRFVPELAGLPDTSIHKPWQAPPQVLAQAGVRLGETYPHPIVDHAAARRR 468

Query: 470 TLNQYYAAK 478
            L +Y   +
Sbjct: 469 ALERYQRIR 477


>gi|221215267|ref|ZP_03588233.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD1]
 gi|221164951|gb|EED97431.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD1]
          Length = 554

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/463 (32%), Positives = 223/463 (48%), Gaps = 12/463 (2%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            MSV +V  R DLR++D+ AL AAC   DA V+ V++  P++       A    +++ SL
Sbjct: 78  RMSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHAPDEDTAWAPGAASRWWLHHSL 136

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + ++L Q+G      +     D    +           +++ R+YE   +  D  L+ 
Sbjct: 137 TSLDRALRQQGAQLHVMEG----DPTIAVPMLARAVGAQAVYWTRRYEPTAIACDTALKT 192

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   +   S   ++   P ++   A Q Y+V+TPF + L  +L          P   L
Sbjct: 193 TLRAEGIAAHSHPGALWQEPWTLTTEAGQPYRVFTPFWRKLRTSLSDCHPLPAARPRRWL 252

Query: 185 T--GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           T  G +    I       + A +   +  GE  A   L +F  E +  Y + RD PA  G
Sbjct: 253 TADGSIPIDAIGLLPPIRWDAGLAEAWRPGEAGAWERLEQFVDEALAEYGDARDAPARMG 312

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LS +L  G ++P Q    L+E         +     +L EL WREF  HL+  +P  
Sbjct: 313 TSRLSAHLHFGEITPTQMLRTLQERVARTSDSDRPDLEPFLRELGWREFAHHLLYHFPHT 372

Query: 302 CMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                F    +   W   D   L  W+QG TG P++DA MRQL   GWMHNR+RM  ASF
Sbjct: 373 TDAN-FDARFDTFAWAPDDDDQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMAVASF 431

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+L   WR G  +F   L+D DLA+N  GWQW A  G D+ PYFR+FNP +Q  RFDP
Sbjct: 432 LTKNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAARFDP 491

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
              +++ WLPEL+ +P   +H P        +   YP P++D 
Sbjct: 492 DAAYLKRWLPELSGLPADVLHRPWKHPAALAV-CGYPAPMIDL 533


>gi|42523667|ref|NP_969047.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
           bacteriovorus HD100]
 gi|39575874|emb|CAE80040.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
           bacteriovorus HD100]
          Length = 435

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/478 (31%), Positives = 222/478 (46%), Gaps = 50/478 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
            V L W R DLR+ DN  LY A     A V+ +FI   E        +  +  FIY  + 
Sbjct: 3   KVTLFWFRRDLRLDDNAGLYHALKERSA-VLPLFIFDSEILENLDDPADARVTFIYEQIQ 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++ L+ K               +E L +   +  V  ++ N  YE    +RD+ +   
Sbjct: 62  DMKQQLNAKKSDLIVRHGKP----LEVLKTLSDEMAVEAIYANHDYEPAARKRDEKVAAW 117

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +  +   +F D  L     IL  A + Y VYTP+R  ++ NL +  L+S P      +
Sbjct: 118 AAKAGIEFLTFKDQCLFEKDEILTDARKPYTVYTPYRNKVLANLSEFYLKSYPNDLYESS 177

Query: 186 GPV--TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GT 242
                    +       F+  +  FP               + +  Y   RD PA + GT
Sbjct: 178 YAKVKKAEPLLTLKSLGFERSNIEFPP---------MDLSTKMLKTYHATRDFPADEKGT 228

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S L  +L  G LS R+     K+               WL+ELIWR+F+  ++  +P V 
Sbjct: 229 SHLGLHLRFGTLSVRELAREAKKYSP-----------VWLSELIWRDFFMQILWHFPQV- 276

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + F P  +KI W K     Q W +G TG+P++DA MR+LN  G+MHNR+RM+ ASFL 
Sbjct: 277 ENQSFRPEYDKIAWRKSKADFQKWCEGRTGYPLVDAGMRELNATGYMHNRVRMVVASFLC 336

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+ W  GE YF  +LLD DL++NNG WQWAA +G D+ PYFRIFNP  Q ++FDP G
Sbjct: 337 KHLLIHWYEGERYFAKKLLDYDLSANNGNWQWAAGSGCDAAPYFRIFNPQTQFEKFDPDG 396

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +++ W+PE                     +  YP P+VDH +A    L  +    K+
Sbjct: 397 KYVQKWVPEYG-------------------TDEYPQPMVDHNEARGRCLQAFTKVLKK 435


>gi|296110301|ref|YP_003620682.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154]
 gi|295831832|gb|ADG39713.1| hypothetical protein LKI_00850 [Leuconostoc kimchii IMSNU 11154]
          Length = 478

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 175/488 (35%), Positives = 253/488 (51%), Gaps = 36/488 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              ++W R DLR++DN AL  A  NSD K++ VF    +Q  +     + S F  AS+ Q
Sbjct: 3   KTSVMWFRRDLRVSDNIALAHAVENSD-KILFVFHIDTQQLEKQPTVNQSSFF--ASVQQ 59

Query: 68  VQKSLSQKGIVFQYHQC---SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           ++KSL ++ I            F+   + L  +        L++NR        RD+++ 
Sbjct: 60  LKKSLKKQNINLYVFYGELKDMFNHIKKQLPHWR------DLYFNRDEHGYGGERDQVIT 113

Query: 125 KRLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLP 178
           K  Q    +   +  D  L     I       Y+V+TP+ K  +     N +  DL ++ 
Sbjct: 114 KYCQEKLNISVHATMDYNLHAAHDIKKADGHYYQVFTPYFKRWMTLVKSNPITIDLTNIS 173

Query: 179 VPAIRLTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              + ++     S +    D  + +  +D    IGE  A  IL  F + K+  Y + RD+
Sbjct: 174 QEHLTVSTLEQDSMLDALIDEKHSYAYVD---QIGEDKARKILSDFIENKLTQYDQNRDV 230

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P++  TS LS YL  G +S R  +  +K+           G  +++ EL WR++Y  + A
Sbjct: 231 PSLDATSHLSRYLRTGEISIRVVYEGIKQA------PDSDGRSTFIKELCWRDYYNMIYA 284

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P         P   +I W  D      W+ G+TGFPI+DAAMRQLN  GWMHNRLRMI
Sbjct: 285 THPQQNES-AIRPEFRQIRWRDDKIGFDDWQTGHTGFPIVDAAMRQLNETGWMHNRLRMI 343

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL KDLL++W+ GE YF  +L+D D ASN GGWQWAASTG DSVPYFRIFNPT+Q K
Sbjct: 344 VASFLTKDLLINWQWGENYFKQKLVDYDPASNIGGWQWAASTGTDSVPYFRIFNPTLQSK 403

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
           +FDPQG FI+ ++PEL  +P   IH P+     +       +  +YP PIV+HK A  + 
Sbjct: 404 KFDPQGLFIKKYIPELKRIPGAKIHEPNKLSSIDQKRYHISIGHDYPKPIVNHKTARINA 463

Query: 471 LNQYYAAK 478
           +  Y  +K
Sbjct: 464 IAAYEKSK 471


>gi|150025093|ref|YP_001295919.1| deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771634|emb|CAL43108.1| Deoxyribodipyrimidine photolyase PhrB1 [Flavobacterium
           psychrophilum JIP02/86]
          Length = 428

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 210/470 (44%), Gaps = 45/470 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++ W R DLR+ DN  L+ A  NSD  ++ +FI       Q      +  FI+  L ++
Sbjct: 1   MNIFWFRRDLRLDDNVGLFHAL-NSDQTILPIFIFDYNILSQLSKDDARVTFIHELLSKM 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           QK L +KG          +    E  +    + +V  ++ N  YE    +RDK L +   
Sbjct: 60  QKKLQEKGKSLAV----FYGKPSEIFEKLISENKVKTIYTNHDYEPYARKRDKELNQLFA 115

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            H +   +  D V+     +     + Y VYTP+     +   Q  L++           
Sbjct: 116 NHNIQFLTSKDQVIFEKSEVTKDDGKPYIVYTPYTNKWKEKFKQTTLKNYNSENYLDKIV 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             P          F+                     +  +  Y   R+ P++  TS L  
Sbjct: 176 THPYPFLSLESIGFETSKITVAS---------YDISENLIDNYEATRNFPSLNKTSFLGI 226

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G +S R+                KS   ++  ELIWREF+  ++  +P     K F
Sbjct: 227 YLRFGAVSVRKMMQEAI----------KSKNETFFKELIWREFFMQILWHFPHTI-NKSF 275

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + I W     L Q W QG TG+P +DA MR+LN  G MHNR+RMI ASFL K LL+
Sbjct: 276 KEKYDAIIWENKEDLFQKWCQGKTGYPFVDAGMRELNATGHMHNRVRMIVASFLCKHLLI 335

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YF ++LLD + +SN G WQWAA +G D+ PYFRIFNPT Q K+FD    +I+ 
Sbjct: 336 DWRWGETYFATKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPTEQIKKFDKDLKYIKK 395

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           W+PEL                    + +YP PIV+HK A    L  Y  A
Sbjct: 396 WIPELQ-------------------TSHYPEPIVEHKFARERCLKVYKEA 426


>gi|170703393|ref|ZP_02894172.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10]
 gi|170131701|gb|EDT00250.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10]
          Length = 505

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/499 (31%), Positives = 248/499 (49%), Gaps = 27/499 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A ++++  +VW R+DLR+TD  AL  A   S   ++ V++    +     +      +
Sbjct: 1   MSAKSSVAPAVVWFRDDLRVTDQPALTRAVA-SGRPLVCVYLDDTGEGAGRALGGAARWW 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D
Sbjct: 60  LHGSLAALDAALARHGGRLLLLRG----DAQREIERVVHDTGAAAVYWNRRYAQPQRDAD 115

Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L+  L+ R    +S + S+L  P  ++  A   ++++T + +A+ ++  +     LP 
Sbjct: 116 AALKATLKARGLEVESSNGSLLNEPWEVMTGAGTPFQIFTAYWRAVRRD--RTVAAPLPE 173

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIG---------EQNALHILRKFCKEKV 227
           P      P       R       A+ P    +  G         E  A   L  F    +
Sbjct: 174 PERIAFHPWPAGMRERALALDTLALRPHAPDWAGGLRDAWPTPDEAGAHAGLDAFVHASL 233

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y + RD P    TS+LSP+L  G +SPRQ W+ ++           +GA  +L+EL W
Sbjct: 234 AGYADSRDRPGQPATSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEKFLSELGW 293

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF   L+  +P++     F    + + W  D   L+AW++G TG+P++DA MR+L T G
Sbjct: 294 REFSHVLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTG 352

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNR+RM+ ASFLVK LL+DWR+GE +F   L+D D A+N   WQW A  G D+ PYFR
Sbjct: 353 WMHNRVRMVVASFLVKHLLIDWRVGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFR 412

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461
           IFNP  QG++FDPQG ++R W+PEL  +    IHAP              L+L+YP PIV
Sbjct: 413 IFNPVTQGRKFDPQGAYVRRWVPELAGLDAAAIHAPWEASTAQLAAAGVRLALDYPAPIV 472

Query: 462 DHKKACHHTLNQYYAAKKQ 480
           DH  A    L+      K+
Sbjct: 473 DHDGARRRALDALATLPKR 491


>gi|78211765|ref|YP_380544.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605]
 gi|78196224|gb|ABB33989.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605]
          Length = 477

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 163/483 (33%), Positives = 224/483 (46%), Gaps = 22/483 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA----RQSHFIYA 63
           S  L W R DLR+ DN  L  A   S A V  V++  P               +  F+  
Sbjct: 4   SRVLFWHRRDLRLADNLGLVVAAQISPA-VTGVYVLDPAVINPPPELPPMAPARLWFLIE 62

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL+++Q+   + G      +     D +  L     Q     + +NR  E    +RD+ +
Sbjct: 63  SLVELQQRWREAGSRLLVVEG----DPVAVLPQVAQQISAEAVVWNRDVEPYARKRDRQV 118

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA- 181
            K LQ       +  D +L+ P  +   A   Y+VY PF +     ++     ++  P  
Sbjct: 119 AKTLQADGRRVVADWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGQVLAQKPATVAAPTG 178

Query: 182 ----IRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDI 236
                    P           + FQ  +      GE  AL  L  FC   +  Y   R+ 
Sbjct: 179 LVDLPPELMPAGDPLPALRESHGFQGSEICPCRPGEAAALEQLTTFCNGPLLGYEPDRNF 238

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLM 295
           P   GTS LS  LS+G LSPRQ W   ++       + +      W  EL WREFY+  +
Sbjct: 239 PGTAGTSYLSAALSVGTLSPRQAWCAAQDSREQARSEEQLQAIAVWEQELGWREFYQQAL 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            ++P +  G P+     +  W  +      WK+G TG PIIDAAMRQLN  GWMHNR RM
Sbjct: 299 FYFPELADG-PYREQWRRFPWENNEDWFDFWKEGQTGMPIIDAAMRQLNQTGWMHNRCRM 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D+ P  RIFNP  Q 
Sbjct: 358 IVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDTKP-LRIFNPATQA 416

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            +FD  G +IR W+PEL +V T+ +    S         +YP P+VDHK         Y 
Sbjct: 417 SKFDSAGDYIRRWVPELRHVNTKDL---LSGEIGALERRDYPEPLVDHKNQQARFKALYA 473

Query: 476 AAK 478
             +
Sbjct: 474 TIR 476


>gi|118363134|ref|XP_001014668.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
           thermophila]
 gi|89296559|gb|EAR94547.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
           thermophila SB210]
          Length = 486

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 161/479 (33%), Positives = 238/479 (49%), Gaps = 50/479 (10%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFI 61
           A     V + W R DLR+ DN ALY A   S  +V+ +FI   E   +       +  FI
Sbjct: 51  AKQKRKVSIFWFRRDLRLNDNTALYNALK-SQNEVVPLFIFDTEILDKLEDKKDARVEFI 109

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           +  ++++Q+ L Q G        +  +           +  +  ++ NR YE +  +RD+
Sbjct: 110 HLYIMKIQEQLKQVGSTLIVKHGTVDN----AFKELVSEFDIQSVYVNRDYESSAKQRDE 165

Query: 122 LLEKRLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            ++K ++         F D V+    S  N     YKV+TP+ K  +  L   D    P 
Sbjct: 166 RIKKYVKQSANAEFYDFKDQVIFEASS-TNKDGSPYKVFTPYSKKWLSILTSEDYSCRPS 224

Query: 180 PAIRLTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            ++      +P   +    +  F+     FP  E N         ++ V  Y + RD P+
Sbjct: 225 ESLMEKFWKSPERKVMSLEEIGFEKAGIPFPSVELN---------EKIVKNYDKTRDTPS 275

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           I+GT+++S +L  G +S R           DL+ + K    ++LNELIWR+FY  ++  +
Sbjct: 276 IEGTTRMSVHLRFGTVSIR-----------DLVRRSKGLNATYLNELIWRDFYMMILDQF 324

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V     F P  +K+ W  +     AW +G TG+ ++DA MRQLN  G+MHNR+RM+ A
Sbjct: 325 PHV-ENNNFKPAYDKLVWRNNVDEFMAWCEGKTGYHLVDAGMRQLNQTGYMHNRVRMVVA 383

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DW+ GE YF S+LLD DL++NNGGWQWAA TG D+ PYFRIFNP  Q K+F
Sbjct: 384 SFLTKHLLIDWKWGERYFASKLLDYDLSANNGGWQWAAGTGTDAQPYFRIFNPDSQQKKF 443

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           DP  T+I+ W+ +LN                   +  YP PIVDHK A    L  +  A
Sbjct: 444 DPNYTYIKTWIKDLN-------------------TKTYPKPIVDHKLARERCLQAFKKA 483


>gi|325292582|ref|YP_004278446.1| DNA photolyase [Agrobacterium sp. H13-3]
 gi|325060435|gb|ADY64126.1| DNA photolyase [Agrobacterium sp. H13-3]
          Length = 479

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/501 (31%), Positives = 231/501 (46%), Gaps = 46/501 (9%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACH--------NSDAKVIAVFIATPEQWRQHGISA 55
            T  S  +VW R D                           VI ++I    +     +  
Sbjct: 2   PTKSSPVIVWFRKD---------LRLADNLALLAAVEHGGPVIPIYI---RETSSGPLGG 49

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            Q  +++ SL  +  +L + G            ++ E L     +     + +NR+YE  
Sbjct: 50  AQEWWLHHSLASLSAALEKCGSRLLLRSG----NAEETLRRLIAETGADAVLWNRRYEPT 105

Query: 116 EVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            +  DK +++ L    +  +SF   +L  P  +   +   Y+VYTPF +AL  +      
Sbjct: 106 GMATDKAIKEALGDDGLTVRSFAGHLLHEPSRVQTKSGGPYRVYTPFWRALEGSEEPHTP 165

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEK 226
              P     L  P T S   +  D+    + P        ++  GE  A   L  F    
Sbjct: 166 ADAPQS---LKAPETWSKSEKLDDWKLLPVKPDWAKDFSEIWTPGENAAREKLDDFIDGA 222

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           +  Y E RD PA   TS L+P+L++G +SP   W+  K     +     +    +  EL+
Sbjct: 223 LKGYEEGRDFPAKDATSLLAPHLALGEISPAAVWHATKGLSRHI---ASNDISRFRKELV 279

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF  HL+  +P +   K +        W  D     AW +G TG+PI+DA MRQL   
Sbjct: 280 WREFCYHLLFHFPEL-DEKNWNDSFGAFGWRDDDTSFNAWTRGMTGYPIVDAGMRQLWKH 338

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G MHNR+RMI ASFL+K LL+DWR GE++F   L+D D ASN   WQW A +G D+ P+F
Sbjct: 339 GTMHNRVRMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFF 398

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDLSLN--YPLPI 460
           RIFNP +QG++FD +G ++R ++PEL  +  +YIH    AP   L K  + L   YPLPI
Sbjct: 399 RIFNPILQGEKFDAEGDYVRRFVPELERLERKYIHKPFEAPKEVLKKAGIELGKTYPLPI 458

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
           VDH KA    L  Y   K  +
Sbjct: 459 VDHGKARERALAAYAEVKNNA 479


>gi|91774219|ref|YP_566911.1| deoxyribodipyrimidine photo-lyase type I [Methanococcoides burtonii
           DSM 6242]
 gi|91713234|gb|ABE53161.1| Deoxyribodipyrimidine photolyase [Methanococcoides burtonii DSM
           6242]
          Length = 467

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 160/482 (33%), Positives = 227/482 (47%), Gaps = 26/482 (5%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS--ARQSHFI 61
           T+ ++  L   R D+R+ DN AL AA   SD  VI  FI  P      G +  +    F+
Sbjct: 2   TSRLNRSLFVFRRDMRVDDNSALLAALDMSDV-VIPCFILDPRLCDPKGKAFNSNALQFL 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  ++  L +                   +        +  +F N  Y    ++RD 
Sbjct: 61  LESLYDLKGQLEKVNGRLYLFSGLPEG----VIGQLLENLEIDAVFVNHDYTPFSIKRDM 116

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +        V    F D +L  PGSI       YKV+T F +   +  V          
Sbjct: 117 QIASICTDKGVDMLQFHDCLLHEPGSIRTKKGTPYKVFTQFFREASKRDVAVPSMFSGGS 176

Query: 181 AIRLTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                  V   +   F     P +        G  N L +L+   +     Y  +RD+P+
Sbjct: 177 FFTGDCGVDEVDEGSFLKRSLPERNEQIFVHGGRANGLSVLQSLSQ--FVNYDTERDLPS 234

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++GT+ LS +  +G +S R+ +  + +E             + +NEL WR+F+  +   +
Sbjct: 235 VKGTTGLSAHNKLGTISIREFYYSVIDEL--------GRGHTLINELYWRDFFTQISFEF 286

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V     F    + + W+ D     AW  G TGFPI+DA MR+LNT G+MHNR+RMI A
Sbjct: 287 PDVFKH-AFKKKFDHLSWDNDRIFFDAWCLGKTGFPIVDAGMRELNTTGYMHNRVRMIVA 345

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDL +DW+ GE YF S+L+D D   NNG WQWAASTG DS PYFRIFNP +Q K+F
Sbjct: 346 SFLVKDLHIDWKRGERYFASKLVDYDPCVNNGNWQWAASTGADSQPYFRIFNPWLQQKKF 405

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKACHHTLNQYYAA 477
           D    +I+ W+PEL ++  Q IH     L+K D+    YP PIVDH K     L  + AA
Sbjct: 406 DKDCKYIKKWIPELEDIEPQRIHK----LEKGDMDIPGYPAPIVDHSKEREVALFMFKAA 461

Query: 478 KK 479
            +
Sbjct: 462 SQ 463


>gi|296083651|emb|CBI23640.3| unnamed protein product [Vitis vinifera]
          Length = 646

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 139/486 (28%), Positives = 233/486 (47%), Gaps = 26/486 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M + +     +VW R DLR+ DN AL  A       V+ VFI  P++  Q         +
Sbjct: 1   MSSDSR---TVVWFRRDLRVDDNPALATAAKEG--SVLPVFIWCPKEEGQFYPGRVSRWW 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+ +++SL   G      +  +   +IE L         TKL YN  Y+   + RD
Sbjct: 56  LKQSLMHLKQSLRSLGADLLLIKAES---TIEALLECIHAIGATKLVYNHLYDPISLVRD 112

Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++++L +  +  +S++  +L  P  I +     +  +  +    +   ++      P 
Sbjct: 113 HSIKQKLMELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSMQMEFVSLLPPW 172

Query: 180 PAIRLTGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQ 233
             +   G V   +I      D   ++ + +    +  G  NA   L +F ++ ++ Y ++
Sbjct: 173 RLVPAAGKVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKK 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWRE 289
           R       TS LSPYL  G LS R+  + ++ + +  + +  S        +L  +  RE
Sbjct: 233 RLKVEGNSTSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLRE 292

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R+L   +PS    +P +   +   W+      +AW+QG TG+P++DA MR+L   GW+
Sbjct: 293 YSRYLCFNFPS-THERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATGWI 351

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ 
Sbjct: 352 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLD 411

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           +P IQG  +DP+G ++RHWLPEL  VPT++IH P             +L  NYP PI++ 
Sbjct: 412 SPEIQGSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEI 471

Query: 464 KKACHH 469
             A   
Sbjct: 472 DLARER 477


>gi|261876463|dbj|BAI47557.1| cryptochrome2 [Glycine max]
          Length = 600

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 144/481 (29%), Positives = 229/481 (47%), Gaps = 22/481 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            M+  +VW R DLRI DN AL AA    D  V  V+I  P++  Q         ++  SL
Sbjct: 2   GMNKTIVWFRRDLRIEDNPALAAAAAAKDGSVFPVYIWCPKEEGQFYPGRVSRWWLKQSL 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + KSL   G      +    D ++E L       + TK+ +N  Y+   + RD  +++
Sbjct: 62  AHLDKSLKSLGAELMLIKT---DSTLEALLECVNAIQATKVVFNHLYDPVSLVRDHNIKE 118

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +L    I  KS++  +L  P SI +     +  + PF    +   ++A    +P   I  
Sbjct: 119 KLVELGISVKSYNGDLLFEPWSIYDETGHAFTTFDPFWNRCLHMQMKA-FSLIPPQLILA 177

Query: 185 TGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            G V   +I +    D   ++ + +    +  G       L +F ++ + +Y + R    
Sbjct: 178 EGKVGKCSIEQLGLEDESEKSSNALLGRAWYPGWNKTDKALTEFVEQHLLHYSKNRLKVG 237

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294
              TS LSPY+  G LS R+ +   + +      +     +  A  +L  +  RE+ R+L
Sbjct: 238 GDSTSLLSPYIHFGELSVRKVFQLARTKQILWANEGNSAGEESATVFLRAIGLREYSRYL 297

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +PS    KP +       W  D    +AW+QG TG+P++DA MR+L   GW+HN++R
Sbjct: 298 CFNFPSTIE-KPLLGNLAFFPWKTDPANFKAWRQGRTGYPLVDAGMRELWATGWIHNKIR 356

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK LL+ WR G +YF   LLD DL S+  GWQ+ +    D     R+ +P I 
Sbjct: 357 VIVSSFAVKMLLIPWRWGMKYFWDTLLDADLESDILGWQYISGCLPDGHKLERLDDPAIH 416

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH 468
           G +FDP+G ++R WLPEL  +P ++IH P +           +L  NYP PI+D  +A  
Sbjct: 417 GAKFDPEGEYVRQWLPELARMPAEWIHHPWNAPLTVLRASGVELGQNYPKPIIDIDQARE 476

Query: 469 H 469
            
Sbjct: 477 Q 477


>gi|298208823|ref|YP_003717002.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
           HTCC2559]
 gi|83848750|gb|EAP86619.1| deoxyribodipyrimidine photolyase-class I [Croceibacter atlanticus
           HTCC2559]
          Length = 434

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 142/474 (29%), Positives = 222/474 (46%), Gaps = 45/474 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  V + W R DLR+ DN     A    D  V+ +FI   +   +   +  +  FI+ +L
Sbjct: 2   SKKVSIFWFRRDLRLDDNVGFLEALK-GDYPVLPLFIFDKDILDKLPENDARVTFIFETL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +++K L      +        D   +   S     ++ ++F NR YE     RD  +++
Sbjct: 61  QEMRKELQD---DYDSSLAMFHDTPEKVFKSLVKDYQIQEVFTNRDYEPYAKERDTSIKE 117

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIR 183
            L ++ +   ++ D V+     ++      Y VYTP++    +N     L+       + 
Sbjct: 118 LLSKNNISFNTYKDQVIFEKDEVVKKDGDPYLVYTPYKNTWKENFKDHTLKIHYTSQHLD 177

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            T   T        +  F+     FP  + +            +  Y + R+ PA  GTS
Sbjct: 178 NTVKNTRLPNVSLSEMGFKKSSISFPEYDTS---------PTLIENYNDTRNFPAKDGTS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L  G +  R+ + +  +   +          ++ NELIWREF+  ++  +P   +
Sbjct: 229 NLSPHLRFGTVGIRKIYKKAIDAKDE----------TFWNELIWREFFMQILYHFPE-TV 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    ++IEW  +    + WK G TG+P++DA MRQLN  G MHNR+RM+  SFL K
Sbjct: 278 NNAFKKKYDRIEWRNNEDEFEKWKTGTTGYPLVDAGMRQLNETGLMHNRVRMVVGSFLCK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF  +LLD +++SN G WQW A +G D+ PYFRIFNPT Q  +FD   T
Sbjct: 338 HLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAAPYFRIFNPTTQIDKFDKNKT 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I HW+ E N                   +  YP  +VDHK+A    LN Y +A
Sbjct: 398 YINHWVKEYN-------------------TNKYPEKMVDHKEARERCLNAYKSA 432


>gi|307825778|ref|ZP_07655994.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
           SV96]
 gi|307733086|gb|EFO03947.1| Deoxyribodipyrimidine photo-lyase [Methylobacter tundripaludum
           SV96]
          Length = 453

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 161/472 (34%), Positives = 221/472 (46%), Gaps = 28/472 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLL 66
           S  L   R DLR+ DN AL  A   S  +VI  FI  P Q   H   S     F+  S+ 
Sbjct: 5   STSLFIFRRDLRLQDNTALLEALRLS-GQVIPCFIFDPRQIEPHPYQSKPGLQFMLQSIQ 63

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ L   G     +         + +     QQ++  +F NR Y     RRD  L   
Sbjct: 64  DLQQQLQSAGGKLALYHALPE----QVVRQLVEQQQIQAVFINRDYTPFSRRRDDELAAV 119

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            +   I   +  DS+L  P   +      YKV+T F     Q  V     +LP   ++  
Sbjct: 120 CKQLGIALHTLPDSLLNEPEQAVKMDKTPYKVFTAFYNNAKQFPV-----ALPEVLVKSN 174

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                S             +P    G + AL IL +        Y+  RD PA+  TS+L
Sbjct: 175 FLAAASE-FTIDQLDLSVTEPAIKGGRKQALAILDRL--GDYVDYLNTRDFPALDATSKL 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G  S R+ +  + E+               + +L WR+F+ H+   +P V  G+
Sbjct: 232 SAHLKFGTCSVREVFYAITEQL--------GSEHPLIRQLYWRDFFTHIAYHFPQV-FGR 282

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+     + W+ +    QAW  G TGFPI+DA MR+LN  G+MHNR+RMITASFLVKDL
Sbjct: 283 AFLEKFADLTWDNNPDYFQAWCDGKTGFPIVDAGMRELNATGYMHNRVRMITASFLVKDL 342

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +DWR GE YF   L+D D   NNG WQW ASTG D+ PYFRI NP +Q  +FD    +I
Sbjct: 343 HIDWRWGERYFARHLVDYDPCVNNGNWQWTASTGCDAQPYFRILNPWLQQLKFDQDCRYI 402

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             WLPEL   P + IH      DK   + +YP PI+DH +    +  ++  A
Sbjct: 403 YRWLPELQAFPPKTIHQW----DKKHSACSYPAPIIDHARESQLSKARFKEA 450


>gi|294665668|ref|ZP_06730944.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604563|gb|EFF47938.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 484

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 152/483 (31%), Positives = 222/483 (45%), Gaps = 17/483 (3%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
              MS  +VW R DLR+ DN AL AA        I ++I  P +  +    A    + + 
Sbjct: 10  RVRMSYAIVWFRRDLRLEDNPALRAALDAGHHP-IPLYIDAPHEEGEWTPGAASRTWRHR 68

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  +L   G            +S + LD    Q     +++NR+YE     RD  +
Sbjct: 69  SLAALDGALRALGSGLVIR----VGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQI 124

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++ L+ R I  +S + ++L  P  +       YKV+TPF +     L        P    
Sbjct: 125 KRDLRERGIEAQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNAPTQLQLPAAMGAPRSLP 184

Query: 183 RLTGPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            L   +    +      P     Q     +  GE  A  +L  F    +  Y E RD P 
Sbjct: 185 PLPASLKTDALDTLQLVPGVQWDQGFWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRPD 244

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             GTSQLSP+L  G ++P +  + L+        +  +    ++ +L WR+F  HL+  +
Sbjct: 245 RVGTSQLSPHLHFGEIAPWRIASTLETH---RTARNGAEIDGYVRQLGWRDFAYHLLHHF 301

Query: 299 PSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           P     +   P     +W   D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI 
Sbjct: 302 PD-TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIV 360

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++
Sbjct: 361 ASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEK 420

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNY-PLPIVDHKKACHHTLNQYY 475
           FDPQ  +I  W+PEL  +  +   AP    L    ++  Y   PI+   +     L  Y 
Sbjct: 421 FDPQAAYITRWVPELGKLAVKERFAPWLHPLSLARVAPQYRRAPIIGLAEGRDAALAAYA 480

Query: 476 AAK 478
            ++
Sbjct: 481 KSR 483


>gi|332520706|ref|ZP_08397168.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix algicola 5H-3-7-4]
 gi|332044059|gb|EGI80254.1| Deoxyribodipyrimidine photo-lyase [Lacinutrix algicola 5H-3-7-4]
          Length = 434

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 137/475 (28%), Positives = 211/475 (44%), Gaps = 47/475 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + +V++ W R DLR+ DN   + A   ++  V+ +FI   E   +   +  +  FI+ +L
Sbjct: 2   SKTVNIFWFRRDLRLDDNVGFFEALK-AEHPVLPIFIFDSEILDELPENDARVSFIFETL 60

Query: 66  LQVQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
             ++++L  +            +   I+   S      +  ++ N  YE     RD  ++
Sbjct: 61  QNMRQTLQDENNSSL----AMFYGKPIDIYKSLIKDYNINTVYTNHDYEPYAKERDSEIQ 116

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-I 182
             L+   I  K++ D V+     ++    + Y VYTP+ K         DL+       +
Sbjct: 117 SFLEENKINFKTYKDQVIFEKNEVVKDDGKPYVVYTPYMKKWKAKFKDYDLKIYYTNTFL 176

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                 T        D  F+                        +  Y   R+ PA   T
Sbjct: 177 NNLIENTRLPNLSLSDIGFKKSSQDIKD---------YTVTPTLIQEYEATRNFPAKDTT 227

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+L P+L  G +S R+   +   E  ++          +  ELIWREF+  ++  +P   
Sbjct: 228 SRLGPHLRFGTVSVRKMVKKATAENNEI----------FWQELIWREFFMQILWHFPD-T 276

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               F    + I+W  ++   +AW  G TG+P++DA MRQLN  G+MHNR+RM+  SFL 
Sbjct: 277 HKDAFKAKYDNIKWRNNNKEFKAWCDGKTGYPLVDAGMRQLNQTGFMHNRVRMLVGSFLC 336

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K LL+DWR GE YF  +L D D+ASN G WQW A +G D+ PYFRIFNPT Q  +FD   
Sbjct: 337 KHLLIDWRKGEAYFAQKLHDYDMASNVGNWQWVAGSGVDASPYFRIFNPTTQIDKFDKDK 396

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            +I+ W+PE                     +  YP  IVDHK+A    L  Y  A
Sbjct: 397 KYIKQWIPEFG-------------------TDKYPEKIVDHKEARERCLKVYKDA 432


>gi|86132772|ref|ZP_01051364.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis
           MED134]
 gi|85816726|gb|EAQ37912.1| deoxyribodipyrimidine photo-lyase, class I [Dokdonia donghaensis
           MED134]
          Length = 436

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 143/477 (29%), Positives = 214/477 (44%), Gaps = 48/477 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +   V + W R DLR+ DN     A    D  V+ +FI   E   +      +  FIY  
Sbjct: 2   STKKVTIFWFRRDLRLDDNVGFLEALK-GDYPVLPIFIFDKEILDKLPEDDARVTFIYNE 60

Query: 65  LLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           L +++ +L ++            +    +          V  +  NR YE   + RDK +
Sbjct: 61  LQKMRDTLQAEHDSSL----AMFYSTPEQIFKELIADYDVQAVITNRDYEPYALERDKKI 116

Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
              L+   +   +F D V+     I+      Y VYTPF+        +     +   + 
Sbjct: 117 ASLLEENDISFTTFKDQVIFEKDEIVKGDGDPYVVYTPFKNKWKATFDEDKDLIIHYTSQ 176

Query: 183 RLTGPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            L   +  S +P     D  F+      P                 +  Y + R+ PA  
Sbjct: 177 YLDNLIDHSRLPNVTLVDMGFKKSSIEVPD---------YDVTPTLIENYEDTRNFPAQD 227

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS+L P+L  G +S R+   +   +  ++          + +ELIWREF+  ++  +P 
Sbjct: 228 GTSRLGPHLRFGTVSVRKMVKKAIAQTNEV----------FWSELIWREFFMQILYHFPH 277

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               K F    ++I+W  +    + WK G TG+ ++DA MR+LN  G+MHNR+RM+TASF
Sbjct: 278 -TKDKAFRSKYDRIDWRNNEEEFEKWKNGQTGYALVDAGMRELNATGYMHNRVRMLTASF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LL+DWR GE YF  +LLD D++SN G WQWAA +G D+ PYFRIFNP  Q  +FD 
Sbjct: 337 LCKHLLIDWRWGETYFAEKLLDYDMSSNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDK 396

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           Q  +I  W+PEL  +                    YP  +VDHK+A    L  Y  A
Sbjct: 397 QKEYINKWVPELQELS-------------------YPDKMVDHKEARERCLKTYKEA 434


>gi|284034972|ref|YP_003384902.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
 gi|283814265|gb|ADB36103.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
          Length = 438

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 167/476 (35%), Positives = 230/476 (48%), Gaps = 48/476 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYAS 64
           +  + LVWLR DLR+ DN ALY A   S   VI VFI              R+  F+   
Sbjct: 2   SEPLSLVWLRRDLRLHDNAALYYALK-SGRPVIPVFIFDRVILDALDDRLDRRVEFLVQE 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           + ++   L++ G           D   E +++Y     +  +F N  YE     RDK + 
Sbjct: 61  VNRLHDELAKLGSTIIVRYGKPVDVWKELIETYT----IGDVFTNHDYEGYAKERDKAIG 116

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L  R I   +  D  +     +L+     Y V+TP+ +     L    L+S P     
Sbjct: 117 ELLAERGIGFHTSKDQAIFERDEVLSGKKTPYTVFTPYSRKWKDTLTDFYLKSYPTENYS 176

Query: 184 LTGPVT-PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-G 241
                T P       D  FQ +   FP  E  +  +L          Y E RD PA+   
Sbjct: 177 SHYWQTKPEPAITLADMGFQPVGEPFPA-ETVSDKLLDT--------YNETRDFPALPHS 227

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLS +L  G +S R+   + K               ++LNEL WR+FY  ++  +P V
Sbjct: 228 TSQLSIHLRFGTISIRELARQAKAA----------DDQTFLNELCWRDFYFQVLDHFPHV 277

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                F    ++IEW  +      W +G TG+PI+DA MRQLNTIGWMHNR+RMITASFL
Sbjct: 278 -EQYSFRREYDQIEWRNNEDEFDKWCRGETGYPIVDAGMRQLNTIGWMHNRVRMITASFL 336

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+DWR GE YF  +L D DL++NNGGWQWAA +G D+ PYFR+FNPT Q +RFDP+
Sbjct: 337 CKHLLIDWRWGEAYFGKKLRDYDLSANNGGWQWAAGSGTDAAPYFRVFNPTAQAQRFDPK 396

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             +IR W+PE++                     +YP P+VDH  A    ++ Y  A
Sbjct: 397 SVYIRQWVPEVDK-------------------PSYPKPMVDHAMARQRAIDTYRKA 433


>gi|255037995|ref|YP_003088616.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
           18053]
 gi|254950751|gb|ACT95451.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
           18053]
          Length = 442

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/484 (32%), Positives = 245/484 (50%), Gaps = 47/484 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59
           M   T   + + W R DLR+ DN  LY A   S   V+ +FI            +  +  
Sbjct: 1   MGLKTKDKIAIFWFRRDLRLHDNAGLYYALR-SGYPVVPLFIFDRNILDDLEEKTDARLT 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI+ ++ +++++L QK           +    +  ++      + +++ N  YE     R
Sbjct: 60  FIHKAVSEIRQALRQKEADIMVE----YGFPEKIWENLVAGHDIAEVYTNTDYEPYATDR 115

Query: 120 DKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           DK + + L+ + ++ K+  D V+     IL+     Y V+TP+ +A  Q L    L+S P
Sbjct: 116 DKAIYRILKQKDIVFKTCKDQVIFEKQEILSGQGSPYTVFTPYSRAWKQKLNDFYLKSYP 175

Query: 179 VPAI-RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                R       S +P   +  F+  D  FP                 +  Y ++RD P
Sbjct: 176 TKKYFRHFHQWHGSALPSLREMGFEKTDYDFPP---------ADVDDTLLKNYAKERDFP 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++ TS++  +L  G +S R           DL  + ++ + ++LNELIWR+FY+ +++ 
Sbjct: 227 AMEATSRIGVHLRFGTVSIR-----------DLARQARAHSDTFLNELIWRDFYQQILSN 275

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P V  G  F    + I+W  D    + W +G TG+P++DA MRQLN IG+MHNR+RM+T
Sbjct: 276 FPHVGKGDAFRKAYDLIKWRYDKADFKKWCEGKTGYPLVDAGMRQLNAIGFMHNRVRMVT 335

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K LL+DWR+GE YF  +LLD DLA+NNGGWQWAA +G D+ PYFRIFNP  Q ++
Sbjct: 336 ASFLSKHLLIDWRLGEAYFAQKLLDYDLAANNGGWQWAAGSGTDAAPYFRIFNPASQAEK 395

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP+  +I+ W+PE                     +  YP P+VDHK+A    L  Y  A
Sbjct: 396 FDPKMEYIKKWVPEFG-------------------TDEYPEPMVDHKEARERCLQAYKTA 436

Query: 478 KKQS 481
             ++
Sbjct: 437 LDKA 440


>gi|78066957|ref|YP_369726.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383]
 gi|77967702|gb|ABB09082.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383]
          Length = 518

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 149/479 (31%), Positives = 236/479 (49%), Gaps = 23/479 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A ++++  +VW R+DLR+TD  AL  A   S   ++ VF+          +      ++
Sbjct: 28  PAKSSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGDGAGRALGGAARWWL 86

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D 
Sbjct: 87  HGSLAGLDAALARHGGRLLLLRG----DAQREIERVVHDTGAEAVYWNRRYAQPQRDADA 142

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L+  L+ R +  +S + S+L  P  +L  +   Y+V+T + +A  ++   A     P  
Sbjct: 143 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAVPLPEPER 202

Query: 181 AIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG---------EQNALHILRKFCKEKVYYY 230
                 P    +     D    +   P +  G         E  A   L  F    +  Y
Sbjct: 203 IAFHPWPKAVRDCALALDVLALRPPVPDWAGGLRDAWPAPDEAGAHARLDAFLTASLAGY 262

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD+P    TS+LSP+L  G LSPRQ W+ ++           + A  +L+EL WREF
Sbjct: 263 ADARDLPDRPATSRLSPFLRFGNLSPRQVWHAVQGAANAGGAAVAADADKFLSELGWREF 322

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T GWMH
Sbjct: 323 SYTLLYHFPALASDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 381

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFN
Sbjct: 382 NRVRMVVASFLIKHLLIDWRAGEAWFWDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 441

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           P  QG++FDP G ++R W+PEL  +    IHAP              L ++YP P+V+H
Sbjct: 442 PVAQGQKFDPDGAYVRRWVPELAGLDNASIHAPWEASPLELDAAGVRLGVDYPAPLVEH 500


>gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
 gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
          Length = 479

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 151/484 (31%), Positives = 232/484 (47%), Gaps = 27/484 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R+DLR+ D+ AL+ A   S   +I ++I        H + A    ++  +L  +
Sbjct: 8   PAIVWFRDDLRMADHPALHEAAA-SGWPLICLYILDDVTPALHPLGAAARWWLRGALADL 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++L ++G        S    + + L     Q     + ++ +    E  +D  + + L+
Sbjct: 67  RRNLEKQGGTLLTLSGS----AEKLLPQLAKQTDAASVHWHHRLHERERAQDNRIRRTLE 122

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--------LPV 179
            +     +   +VL+ P ++       YKV   F KAL  + V   L +        +P 
Sbjct: 123 EQECEVHAQWGTVLVDPDTVQTKQGGFYKVCGSFWKALQTHAVPEPLEAPSRLSFHAIPA 182

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             +        S  P+  D+        +  GE      L  F K  V  Y   RD  A 
Sbjct: 183 SVLSDARLNEDSLCPQAPDW-AAGFRKTWEPGEAEGQEHLEDFLKNSVAGYPRGRDRVAE 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GTS+LSPYL+ G +SPRQ W  L++           G   +L+EL WREF R+ +   P
Sbjct: 242 EGTSRLSPYLASGAVSPRQVWAALQKHGA-----HTDGPRIFLSELGWREFARYTLYHLP 296

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +       P    + W + +  L+AW++G TG PI+DA MRQL   GWMHNR RMI  S
Sbjct: 297 KLPFEN-LSPKFSGMHWRRSAADLKAWQRGQTGVPIVDAGMRQLWQTGWMHNRARMIVGS 355

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DW+ G+ +F   L+D D A+N   WQW A TG ++ P+FRIFNPT Q ++FD
Sbjct: 356 FLTKHLLIDWKEGDAWFRDTLVDADFANNAMNWQWVAGTGIEATPFFRIFNPTRQAEKFD 415

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473
           P G +IR W+PEL  +  + +  P +  D+        L  +YP PIVD K+     L  
Sbjct: 416 PNGDYIRQWVPELRRLSGKALFEPWAAKDEELEKAGVRLGKSYPRPIVDLKEGRDRALQA 475

Query: 474 YYAA 477
           + + 
Sbjct: 476 FRSL 479


>gi|304571332|dbj|BAJ15784.1| cryptochrome2 [Cardamine nipponica]
 gi|304571336|dbj|BAJ15786.1| cryptochrome2 [Cardamine nipponica]
 gi|304571338|dbj|BAJ15787.1| cryptochrome2 [Cardamine nipponica]
 gi|304571340|dbj|BAJ15788.1| cryptochrome2 [Cardamine nipponica]
          Length = 590

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 222/485 (45%), Gaps = 24/485 (4%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + +SL   G
Sbjct: 1   DLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALG 58

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKS 135
                 +  N   ++  +         TK+ +N  Y+   + RD  ++++L    I  +S
Sbjct: 59  SELTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
           F+  +L  P  I     + +  ++ + K  ++  +++ +   P   + +T          
Sbjct: 116 FNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACS 175

Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             +   +          +   +  G  NA  IL +F ++++  Y +         TS LS
Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235

Query: 247 PYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           PYL  G +S R+ +   R+K+       +    A  +L  +  RE+ R++   +P     
Sbjct: 236 PYLHYGEISVRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFP-FTHE 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +       W+ D    +AW+QG TG+P++DA MR+L   GW+HNR+R+I +SF VK 
Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKF 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP IQG +FDP+G +
Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414

Query: 425 IRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR WLPEL  +P+++IH P             +L  NY  PIVD   A           +
Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474

Query: 479 KQSLL 483
           +  ++
Sbjct: 475 EAQIM 479


>gi|304571334|dbj|BAJ15785.1| cryptochrome2 [Cardamine nipponica]
          Length = 590

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 222/485 (45%), Gaps = 24/485 (4%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + +SL   G
Sbjct: 1   DLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALG 58

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKS 135
                 +  N   ++  +         TK+ +N  Y+   + RD  ++++L    I  +S
Sbjct: 59  SELTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
           F+  +L  P  I     + +  ++ + K  ++  +++ +   P   + +T          
Sbjct: 116 FNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAATEAVWACS 175

Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             +   +          +   +  G  NA  IL +F ++++  Y +         TS LS
Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235

Query: 247 PYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           PYL  G +S R+ +   R+K+       +    A  +L  +  RE+ R++   +P     
Sbjct: 236 PYLHYGEISVRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFP-FTHE 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +       W+ D    +AW+QG TG+P++DA MR+L   GW+HNR+R+I +SF VK 
Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKF 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP IQG +FDP+G +
Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414

Query: 425 IRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR WLPEL  +P+++IH P             +L  NY  PIVD   A           +
Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474

Query: 479 KQSLL 483
           +  ++
Sbjct: 475 EAQIM 479


>gi|304571328|dbj|BAJ15782.1| cryptochrome2 [Cardamine nipponica]
 gi|304571330|dbj|BAJ15783.1| cryptochrome2 [Cardamine nipponica]
          Length = 590

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 222/485 (45%), Gaps = 24/485 (4%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLRI DN AL AA H     V  VFI  PE+  Q         ++  SL  + +SL   G
Sbjct: 1   DLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLRALG 58

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKS 135
                 +  N   ++  +         TK+ +N  Y+   + RD  ++++L    I  +S
Sbjct: 59  SELTLIKTHN---TVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQS 115

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
           F+  +L  P  I     + +  ++ + K  ++  +++ +   P   + +T          
Sbjct: 116 FNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLEMSIESVMLPPPWRLMPVTAAAEAVWACS 175

Query: 196 FFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             +   +          +   +  G  NA  IL +F ++++  Y +         TS LS
Sbjct: 176 IEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLS 235

Query: 247 PYLSIGVLSPRQCWN--RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           PYL  G +S R+ +   R+K+       +    A  +L  +  RE+ R++   +P     
Sbjct: 236 PYLHYGEISVRRVFQCARMKQIIWAKNSEGDESADLFLKGIGLREYSRYICFNFP-FTHE 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +  +       W+ D    +AW+QG TG+P++DA MR+L   GW+HNR+R+I +SF VK 
Sbjct: 295 QSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKF 354

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ NP IQG +FDP+G +
Sbjct: 355 LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDY 414

Query: 425 IRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR WLPEL  +P+++IH P             +L  NY  PIVD   A           +
Sbjct: 415 IRQWLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIARTR 474

Query: 479 KQSLL 483
           +  ++
Sbjct: 475 EAQIM 479


>gi|182414480|ref|YP_001819546.1| deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
 gi|177841694|gb|ACB75946.1| Deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
          Length = 501

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/499 (31%), Positives = 242/499 (48%), Gaps = 32/499 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHG-------IS 54
           M+  L+W R DLR+ DN AL+AA       VI V++       P                
Sbjct: 1   MTPTLLWFRQDLRLQDNPALHAALARG-GPVIPVYVWEESCESPAAEGARANDGWAAQPG 59

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           A    +++ SL  +  ++ ++G      +     D +  L           +++NR+YE 
Sbjct: 60  AASRWWLHHSLEALDAAVRERGGRLILRRG----DPLAELQEIVRATGAKGVYWNRRYEP 115

Query: 115 NEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
               RD  ++  L    +  K+F+ ++L  P +ILN     ++V++ + +  +   V A 
Sbjct: 116 AARARDARVQTELAAAGLDVKTFNSALLNEPETILNKQGGPFQVFSAYWRHCLTLPVAAP 175

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYY 229
            +    P           ++      P  A D      +  GE +A   + +F    +  
Sbjct: 176 RKLPAGPIPAPERWPRSLDVAALELRPRVAWDRGLAQAWTPGEASAAKRMTRFVAGAIDR 235

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWR 288
           Y E+RD P   GTS LS  L  G +SPRQ W  ++    +  +  P +GA  +L EL WR
Sbjct: 236 YDEERDFPGCDGTSMLSAALHWGEISPRQLWAAVRGRSRESGVFPPSNGARIFLAELGWR 295

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTI 346
           EF  HL+  +P     +P      +  W +D     L+AW++G TG+PI+DA MRQL   
Sbjct: 296 EFAYHLLWHFPHTIE-QPLRRAFARFSWAEDPEGRRLRAWQRGQTGYPIVDAGMRQLWQT 354

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNR+RMI ASFLVK L + W  G  +F   L+D DLA+N  GWQW+A  G D+ PYF
Sbjct: 355 GWMHNRVRMIVASFLVKHLRLSWPHGATWFWDTLVDADLANNTLGWQWSAGCGADAAPYF 414

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           RIF P +QG++FD  G ++R W+PEL  +P +++HAP +   +        L  NYP P+
Sbjct: 415 RIFAPVLQGRKFDSDGVYVRRWVPELARLPDRFLHAPWTATAQTLAAAGVRLGENYPRPV 474

Query: 461 VDHKKACHHTLNQYYAAKK 479
           VDH  A    L  +   ++
Sbjct: 475 VDHAAARAEALAAFRQLRE 493


>gi|71084006|ref|YP_266726.1| deoxyribodipyrimidine photo-lyase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71063119|gb|AAZ22122.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (Photoreactivating enzyme) [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 473

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 151/483 (31%), Positives = 243/483 (50%), Gaps = 26/483 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW+R D RI  N+AL  A  N +  V A++I  P+ + +   +  Q  ++  SL  + 
Sbjct: 5   AIVWIREDFRIEYNEALATATQNHEY-VSAIYIYNPKNFDKKREA--QKWWLSKSLENLS 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
             L +  I  +        D +E L     +  VT +++++ YE + + + K +     +
Sbjct: 62  IDLKKLNITLEVQ----LGDELEVLSILKKKDDVT-VYWSKVYEPDVINKGKKIRDLFIK 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + +  K F  ++L+    +       YKV+TPF K   Q+ +      L     ++    
Sbjct: 117 NEIQYKYFKGNILVEFQEMTKDDGTPYKVFTPFWKKTEQHYISKAPSKLIRVKSKIKKIN 176

Query: 189 TPSNIPRFFDY-----PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              N     +        +  +  +   E+ A   L++    K+  Y + RDIP + GTS
Sbjct: 177 IFKNSISIKEILPKKNWHKKFEKYWDPSEKEAKKYLQELINNKIEDYGDARDIPGVNGTS 236

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L  G +     W + ++  V      K G   ++NEL WREF   L+ ++P +  
Sbjct: 237 KLSPFLKFGQIHVETIWKKCQDIKVK-----KIGYRKYINELGWREFSHSLINYFPQMLK 291

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G       +   W K+   L+AWK G TG+PI+DA MR+L   GWMHNR+RMI ASFLVK
Sbjct: 292 GN-LRKDFDNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRMIVASFLVK 350

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L + W  GE++F + L+D + ASN   WQW A  G D+ PYFRIFNP +QG++FD  G 
Sbjct: 351 HLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKDGI 410

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477
           + + W+PEL N+P ++++ P     K        + +NYP PI+DH +A +  L+ +   
Sbjct: 411 YTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIIDHVEARNAALDAFKTI 470

Query: 478 KKQ 480
           KK 
Sbjct: 471 KKN 473


>gi|326794343|ref|YP_004312163.1| deoxyribodipyrimidine photo-lyase [Marinomonas mediterranea MMB-1]
 gi|326545107|gb|ADZ90327.1| Deoxyribodipyrimidine photo-lyase [Marinomonas mediterranea MMB-1]
          Length = 497

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 184/497 (37%), Positives = 260/497 (52%), Gaps = 31/497 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAK---------------------VIAVFIATP 45
           M+  LVWLRNDLR+TD+ ALY A     A+                     V  V   TP
Sbjct: 1   MATQLVWLRNDLRLTDHPALYGASDMGGAQSITTASEKADSTAASTTTTPDVHIVICMTP 60

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105
           EQW  H  SA +     A +  + K   QKGI+      + F +    L   C   +   
Sbjct: 61  EQWCAHSESAAKQSLRVALIDALGKECEQKGIMLHTLHLNTFSECAPALLDLCQSLKCES 120

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
           +++  +   +E +RD  +E+ L    +        L+    +LN+    +KV+TP+ +  
Sbjct: 121 IWWQSELPFDEQQRDSQVERLLSEHGVTVHHLAPDLIVSQPLLNNQGTPFKVFTPYYRRW 180

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI------DPMFPIGEQNALHIL 219
           I+ L      S P    +  G     N     +   +        D ++P    +    L
Sbjct: 181 IEILKSNAFYSYPEMPSKAKGTYGDVNHSTAINISNEYFANERYRDDIWPANYAHIKETL 240

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
             FC  K   Y   R+IP+  GTS LSPYL++G + PR+  + LK  +  +  +      
Sbjct: 241 DSFCSLKEADYEAVREIPSTAGTSLLSPYLALGAVGPRELLSALKNGY-QIREEGYWADS 299

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
            WL EL WR+FY+ LM  +P + M + F P TE+I W+K+    QAW  G TGFPI+DAA
Sbjct: 300 IWLKELAWRDFYKQLMWHFPRLSMRQAFKPETEQIIWSKNDTHFQAWCDGQTGFPIVDAA 359

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQLN  GWMHNRLRMITASFL K L +DWR GE+YFMS+L+DG+ A+NNGGWQW+ASTG
Sbjct: 360 MRQLNQTGWMHNRLRMITASFLTKLLFIDWRKGEDYFMSKLIDGEFAANNGGWQWSASTG 419

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
            D+VPYFR+FNPT Q + +D  G FIR ++PEL+ +  + IH+P      +     YP P
Sbjct: 420 CDAVPYFRVFNPTRQSETYDTNGHFIRRFVPELSALSDKEIHSPSV---SHRQQCRYPEP 476

Query: 460 IVDHKKACHHTLNQYYA 476
           I+D+K A  H ++ +  
Sbjct: 477 IIDYKSARKHAIDAFAE 493


>gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
 gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
          Length = 486

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 130/488 (26%), Positives = 226/488 (46%), Gaps = 31/488 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLRI D++ LY      D  VI  +     Q++            +  F+  S+
Sbjct: 7   LIWYRNDLRIHDHEPLYQGIKEGD-LVIPFYCFDIRQFQTTSYAFPKTGNFRGQFLLESV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL   G      +        + +     +  +  ++++ +    E + +K +++
Sbjct: 66  ANLRQSLQDLGSDLIVRKG----YPEKIIPELIKELEIDAVYFHEEVTSEETKVEKKVKQ 121

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+  +V    F  + L     +     Q+ +V+T FRK + +N         P   + L
Sbjct: 122 ALKPLKVKVPGFWGATLYHWNDLPFEVNQLPEVFTSFRKKVEKNSTVNPTLITPRKLLSL 181

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEKV--YYYVEQRD- 235
              V   NIP   +   +  D        F  GE   +  L+ +  E+     Y E R+ 
Sbjct: 182 PD-VEIGNIPSLEELGLKKSDSDSRGVLNFKGGETAGIKRLQDYFWERNCLKEYKETRNG 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ SP+L+ G LSPR  +  +++   + +    +  +  + EL+WR+++R + 
Sbjct: 241 MLGADYSSKFSPWLAHGCLSPRYIYEEVQKYEEERV--KNNSTYWLIFELLWRDYFRFIC 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A + +    K  +   + I W +D      W++G TG+P++DA MR++   G+M NR R 
Sbjct: 299 AKHGNKIFYKSGLQGLD-IPWKEDQDRFILWQEGKTGYPLVDANMREIAATGFMSNRGRQ 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR FN   Q 
Sbjct: 358 NVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQS 416

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K +D +G ++RHWLPEL  +P   IH P              + ++YP P+VD  K+   
Sbjct: 417 KDYDSKGDYLRHWLPELKMIPGDKIHEPWKLSQDEQKRYNVRIGVDYPKPVVDFFKSVKA 476

Query: 470 TLNQYYAA 477
               Y +A
Sbjct: 477 NEKVYNSA 484


>gi|332662341|ref|YP_004445129.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332331155|gb|AEE48256.1| Deoxyribodipyrimidine photo-lyase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 449

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/492 (32%), Positives = 228/492 (46%), Gaps = 63/492 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLL 66
           ++ L W R DLR+ DN  LY A   S+  V+ +FI   E   +       +  F++  + 
Sbjct: 3   AITLFWFRRDLRLQDNAGLYHALK-SNFPVLPLFIFDTEILDELDDPEDARVAFLHQRIT 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q  L   G           +   E L  Y     V +++ N  YE   ++RD+ ++  
Sbjct: 62  ELQAELEHLGSSMLVRYGKPAEVWPEILQDYL----VAEVYTNHDYEPRAIQRDEAVQNL 117

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL---------------IQNLV 170
           L Q  +   SF D V+     +     + Y V+TP+ +                 I+ ++
Sbjct: 118 LAQQNIPYFSFKDQVIFEKLEVTKLDGKPYTVFTPYSRMWKNCLASQMETIQENGIEQVI 177

Query: 171 QADLRSLPVPAIRLTGPVT-PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
              L+  P          T P  +P      FQ      P              +  +  
Sbjct: 178 SFFLKPYPTEKYYPNFWQTAPPPLPALSAMGFQPSSIAIPP---------TTVSRGLIKQ 228

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y + RD P + GTS+L  +   G +S R+   R  E              ++LNELIWR+
Sbjct: 229 YDKTRDFPYLNGTSRLGIHFRFGTISIREKARRALELN-----------ETFLNELIWRD 277

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FY  ++  +P V   + F P  ++IEW  D    + W  G TG+PI+DA +R+LN  G+M
Sbjct: 278 FYAQILFNFPHVA-QRSFRPEYDQIEWRNDEDEFEKWCAGKTGYPIVDAGLRELNATGYM 336

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RMITASFL K LL+DWR GE YF  +LLD DLASNNGGWQWAA  G D+ PYFR+F
Sbjct: 337 HNRVRMITASFLTKHLLIDWRWGEAYFAKKLLDYDLASNNGGWQWAAGCGTDAAPYFRVF 396

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHH 469
           +P  Q ++FDP+  ++R W+PE                     +  YP PIVDHK A   
Sbjct: 397 SPAAQQEKFDPEYKYVRKWVPEYG-------------------TDAYPKPIVDHKFARER 437

Query: 470 TLNQYYAAKKQS 481
            L  Y AA K  
Sbjct: 438 CLEVYKAALKGG 449


>gi|170733532|ref|YP_001765479.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
 gi|169816774|gb|ACA91357.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
          Length = 519

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 149/479 (31%), Positives = 235/479 (49%), Gaps = 23/479 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A  +++  +VW R+DLR+TD  AL  A   S   ++ VF+          +      ++
Sbjct: 29  SAKPSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGAGAGPALGGAARWWL 87

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D 
Sbjct: 88  HGSLAGLDAALARHGGRLLLLRG----DAQREIERVVGDTGAAAVYWNRRYAQQQRDADA 143

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L+  L+ R +  +S + S+L  P  +L  +   Y+V+T + +A  ++   A     P  
Sbjct: 144 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPER 203

Query: 181 AIRLTGP----------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                 P             +  P   D+     D      E  AL  L +F    +  Y
Sbjct: 204 IAFHPWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDRFLTTSLAGY 263

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD P    TS+LSP+L  G +SPRQ W+ ++           + A  +L+EL WREF
Sbjct: 264 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAAYAAHADKFLSELGWREF 323

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T GWMH
Sbjct: 324 SYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 382

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFN
Sbjct: 383 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 442

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           P  QG++FDP G ++R W+PEL  +    IHAP              L ++YP P+V+H
Sbjct: 443 PVAQGQKFDPGGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGVDYPAPLVEH 501


>gi|154248595|ref|YP_001419553.1| deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2]
 gi|154162680|gb|ABS69896.1| Deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2]
          Length = 500

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/493 (30%), Positives = 229/493 (46%), Gaps = 25/493 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            + +  S  L+W R+DLR++DN AL AA   +   + A+++   +      +      ++
Sbjct: 18  ASGSPASPSLLWFRDDLRLSDNPAL-AALAEARTPLAALYVLDEDSPGVRPLGGAARWWL 76

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L  +G+     +      +   +           + +N +    E R D 
Sbjct: 77  AQSLRALAADLKDRGVPLILRRGP----ANRVVPEVAALLGAATVAFNDRAGAAETRVDH 132

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +  RL        SF   +L PPGS+   +  M + ++ F +A ++          P  
Sbjct: 133 AVAARLLSEDRRVLSFCAHLLHPPGSVEGASGGMPRTFSSFHRAALKARRLDTPLPAPK- 191

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK--------FCKEKVYYYVE 232
              L G   P        +  +   P +  G ++A              F    +  Y E
Sbjct: 192 --HLDGVAHPPEGETLESFDLEPTHPDWAGGLRSAWTAGEAAAQARLAAFMDAGLAGYAE 249

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD P +   S+LSP+L  G +SPRQ  + ++    +    P   A  +  EL WREF  
Sbjct: 250 GRDRPDLNHVSRLSPHLRFGEISPRQILSAVR-HAAEAGAVPLVDADKFEAELYWREFSY 308

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           HL+A  P +          +   W +    L+AW +G TG+P++DA +RQL   GWMHNR
Sbjct: 309 HLLAEMPDLARSN-IQHGFDAFPWRECPGELKAWHKGLTGYPLVDAGLRQLWQTGWMHNR 367

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RM+ ASFL K LL+DWR GE++F   L+D D A+N   WQW A +G D+ PYFRIFNP 
Sbjct: 368 VRMVVASFLTKHLLIDWRSGEDWFWDTLVDADGANNAASWQWVAGSGLDAAPYFRIFNPV 427

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKA 466
            QG++FDP GT++R ++PEL  +P   IH P +     L    + L   YP P+VDH  A
Sbjct: 428 TQGEKFDPDGTYVRTFVPELGKLPAPLIHKPWTADAHTLAHAGIRLGHTYPRPLVDHGAA 487

Query: 467 CHHTLNQYYAAKK 479
               L  + + +K
Sbjct: 488 RERALRAFESTRK 500


>gi|225433126|ref|XP_002285169.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 652

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 139/486 (28%), Positives = 233/486 (47%), Gaps = 26/486 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M + +     +VW R DLR+ DN AL  A       V+ VFI  P++  Q         +
Sbjct: 1   MSSDSR---TVVWFRRDLRVDDNPALATAAKEG--SVLPVFIWCPKEEGQFYPGRVSRWW 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+ +++SL   G      +  +   +IE L         TKL YN  Y+   + RD
Sbjct: 56  LKQSLMHLKQSLRSLGADLLLIKAES---TIEALLECIHAIGATKLVYNHLYDPISLVRD 112

Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++++L +  +  +S++  +L  P  I +     +  +  +    +   ++      P 
Sbjct: 113 HSIKQKLMELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSMQMEFVSLLPPW 172

Query: 180 PAIRLTGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQ 233
             +   G V   +I      D   ++ + +    +  G  NA   L +F ++ ++ Y ++
Sbjct: 173 RLVPAAGKVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKK 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWRE 289
           R       TS LSPYL  G LS R+  + ++ + +  + +  S        +L  +  RE
Sbjct: 233 RLKVEGNSTSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLRE 292

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R+L   +PS    +P +   +   W+      +AW+QG TG+P++DA MR+L   GW+
Sbjct: 293 YSRYLCFNFPS-THERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATGWI 351

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ 
Sbjct: 352 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLD 411

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           +P IQG  +DP+G ++RHWLPEL  VPT++IH P             +L  NYP PI++ 
Sbjct: 412 SPEIQGSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEI 471

Query: 464 KKACHH 469
             A   
Sbjct: 472 DLARER 477


>gi|91762930|ref|ZP_01264895.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (Photoreactivating enzyme) [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718732|gb|EAS85382.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (Photoreactivating enzyme) [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 473

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 152/483 (31%), Positives = 243/483 (50%), Gaps = 26/483 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW+R D RI  N+AL  A  N +  V A++I  P+ + +   +  Q  ++  SL  + 
Sbjct: 5   AIVWIREDFRIEYNEALATATQNHEY-VSAIYIYNPKNFDKKREA--QKWWLSKSLENLS 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
             L +  I  +        D +E L     +  VT +++++ YE + + + K +     +
Sbjct: 62  IDLKKLNITLEVQ----LGDELEVLSILKKKDDVT-VYWSKVYEPDVINKGKKIRDLFIK 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + +  K F  ++L+    +       YKV+TPF K   Q+ +      L     ++    
Sbjct: 117 NEIQYKYFKGNILIEFQEMTKDDGTPYKVFTPFWKKTEQHYISKAPSKLIRVKSKIKKIN 176

Query: 189 TPSNIPRFFDY-----PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              N     +        +  +  +   E+ A   L++    K+  Y + RDIP + GTS
Sbjct: 177 IFKNSISIKEILPKKNWHKKFEKYWDPSEKEAKKYLQELINNKIEDYGDARDIPGVNGTS 236

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L  G +     W + ++  V      K G   ++NEL WREF   L+ ++P +  
Sbjct: 237 KLSPFLKFGQIHVETIWKKCQDIKVK-----KIGYRKYINELGWREFSHSLINYFPQMLK 291

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G       +   W K+   L+AWK G TG+PI+DA MR+L   GWMHNR+RMI ASFLVK
Sbjct: 292 GN-LRKDFDNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRMIVASFLVK 350

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L + W  GE++F + L+D + ASN   WQW A  G D+ PYFRIFNP +QG++FD  G 
Sbjct: 351 HLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKAGI 410

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477
           + + W+PEL N+P ++++ P     K        + +NYP PIVDH +A +  L+ +   
Sbjct: 411 YTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIVDHVEARNAALDAFKTI 470

Query: 478 KKQ 480
           KK 
Sbjct: 471 KKS 473


>gi|83746230|ref|ZP_00943284.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
 gi|83727196|gb|EAP74320.1| Deoxyribodipyrimidine photolyase [Ralstonia solanacearum UW551]
          Length = 560

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 170/490 (34%), Positives = 242/490 (49%), Gaps = 31/490 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---QHGI-SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V   F+           HG+ + R+  FI A++
Sbjct: 65  GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAV 123

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ +L + G           D +   + S   Q  V  +F N   E   + RD  +  
Sbjct: 124 EALRGALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 179

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L  +      F D V+     +LN   + Y V+TP++ A +  +   DLR+ P+     
Sbjct: 180 ALARQPCAWLDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 239

Query: 185 TGPVTPSNI----PRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                P  +    P      F   +      P G   A  +L  F   ++  Y  +RD P
Sbjct: 240 ALARPPQGLAPATPSLEAMGFARSNLSAIALPTGMSGAEALLDDF-ATRMDDYHARRDYP 298

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S R     L       ++    GA +WL+ELIWR+FY  ++  
Sbjct: 299 AVRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYFMILHH 354

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P +  G  F P  ++I W           AW+   TG+P++DAAM Q+   G+MHNRLR
Sbjct: 355 RPDLAGGASFRPEFDRIRWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLR 414

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL+KDL VDWR GE YF   L D D A+NNGGWQWAAS+G D+ P+FRIFNP  Q
Sbjct: 415 MVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQ 474

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468
            ++FDPQG FIR +LP+L  +P +Y+HAP +            L   YP PIV+H  A  
Sbjct: 475 SEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPRPIVEHAAARA 534

Query: 469 HTLNQYYAAK 478
            TL +Y  AK
Sbjct: 535 ATLERYAPAK 544


>gi|222479858|ref|YP_002566095.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
 gi|222452760|gb|ACM57025.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
          Length = 514

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 156/515 (30%), Positives = 226/515 (43%), Gaps = 52/515 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + L W R DLR+ DN  L AA     +       VF+  P+       S  +   +   L
Sbjct: 1   MELFWHRRDLRVADNVGLAAATGTRDDGRGPAAPVFVFDPDVLD--HASDVRVRRLLDGL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++     +G      + +        L          ++ +NR Y      RD  +  
Sbjct: 59  AALRDDYRDRGSDLLVARGAPE----TVLPELAAALDAERVVWNRDYSGLARERDAGVRT 114

Query: 126 RLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    I +    D+VL  P SI  +A   Y VY+ + K     +      +     +  
Sbjct: 115 ALNDAGIDREVLHDAVLHTPESIRTNAGDPYSVYSYYWKKWTDRVADPPAPTPDAGDLVD 174

Query: 185 TGPVTPS---------------------NIPRFFDYPFQAIDPMF-PIGEQNALHILRKF 222
            G +T +                     ++P   D  F   +    P G + A   L  F
Sbjct: 175 AGDLTAAVGTDGGAETDGGAAIDRVAVGDLPAPADLGFAEPEADVGPAGTEAARDRLDDF 234

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK--------- 273
             E V+ Y  +RD PA + TS++S +L  G +  R+ +   K+       K         
Sbjct: 235 LSEAVFSYDAERDYPAREATSRMSAFLKYGEIGVREAYEATKDAMAMAEEKTGERDEGGD 294

Query: 274 --------PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
                   P +    +  +L WREFY  ++   P V     +  + E I W  D   + A
Sbjct: 295 HEDGDDEGPVAAVEEYQKQLAWREFYTQVLYHNPEVVTEN-YKEYEEGIAWRDDPDEIAA 353

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           WK+G TG+PI+DA MRQL    +MHNR+RMI ASFL KDLL DWR G +YF   L D D 
Sbjct: 354 WKRGETGYPIVDAGMRQLREEAFMHNRVRMIVASFLTKDLLADWRHGYDYFRETLADHDT 413

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH- 444
           A+++GGWQWAASTG D+ PYFRIFNP  QG+R+DP   +I+ ++PEL  +    IH  H 
Sbjct: 414 ANDSGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYIKRYVPELRGLDADLIHEWHE 473

Query: 445 -SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            S   + + + NYP PIVDH +     L  Y  A+
Sbjct: 474 LSPTQRANAAPNYPAPIVDHSERREEALAMYKRAR 508


>gi|95929775|ref|ZP_01312516.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
           684]
 gi|95134071|gb|EAT15729.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
           684]
          Length = 475

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 150/495 (30%), Positives = 235/495 (47%), Gaps = 34/495 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +  +  V ++W R DLR+ DN AL  A       VI ++I   E      + A    +
Sbjct: 1   MPSAPSAPV-IMWFRQDLRLHDNPALLTATRLG--PVIPIYILDDEHAADQRMGAASRCW 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  + + L     +F+         +   L+          + +NR YE   + RD
Sbjct: 58  LHRSLDALNQQLDGHLQLFR-------GPADTLLEQLVQHYDCRTVTWNRCYEPWRINRD 110

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           ++++++LQ   +   S + S+L  P  +L      Y+++TPF +    ++       LP 
Sbjct: 111 RIIKEKLQGLGITVHSDNGSLLWEPWQVLKRDQTPYQIFTPFYRHARDSVPVR--SPLPR 168

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFCKEKVYYYVE 232
           PA      VTP +  +  D   +   P        +  GE  A    + F +E++  Y E
Sbjct: 169 PAEIALAAVTPYSALKLADLELRPNHPWADKVLHHWQPGEAGAQQRWQTFMEEELLGYGE 228

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD+PA    S+LSP +  G +S  Q W+       D        A ++  +L WREF  
Sbjct: 229 GRDLPAQPHVSRLSPAIHWGEISVHQLWH-------DAQAIGHEDALAFQRQLAWREFSV 281

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             +  +P +              W+ D+  L  W+QG TG P +DA MR+L   G MHNR
Sbjct: 282 TQLFHHPDMDR-INLDRRFNLFPWHDDAEKLNRWQQGLTGIPFVDAGMRELWQTGTMHNR 340

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RM+  SFLVK+L + W  G  +F   LLD DLA+N+  WQW A  G D+ PYFRIFNP 
Sbjct: 341 VRMVVGSFLVKNLGIHWHHGAAWFWDCLLDADLANNSASWQWIAGCGADAAPYFRIFNPV 400

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN--YPLPIVDHKKA 466
            QG++FDP G + RH++PEL  +P +Y+  P       L +  ++L   YP P+VD K +
Sbjct: 401 TQGQKFDPHGDYTRHFVPELAKLPNRYLFCPWQAPKGLLQECGITLGGTYPEPMVDIKVS 460

Query: 467 CHHTLNQYYAAKKQS 481
               L+ Y   ++ +
Sbjct: 461 RQQALDAYAHMRQAT 475


>gi|3551221|dbj|BAA32809.1| blue-light photoreceptor [Adiantum capillus-veneris]
 gi|3551227|dbj|BAA32812.1| blue-light photoreceptor [Adiantum capillus-veneris]
          Length = 718

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 220/488 (45%), Gaps = 27/488 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A S  +VW R DLR+ DN     A       V+ VFI +P++  Q         ++  SL
Sbjct: 2   AKSCTVVWFRRDLRLEDNP--ALAAAARAGAVVPVFIWSPDEEGQFRPGRVSRWWLKQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +Q+  SL   G+        N +D++  L         +++ YN  Y+   + RD  +++
Sbjct: 60  IQLDISLRSLGVSLVMI---NANDTVSALLELVKTTGASQVVYNHLYDPVSLVRDHRVKQ 116

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L Q+ +  +SF+  +L  P  +L+   + +  +  +    +    + +   LP P    
Sbjct: 117 SLVQNGIQVQSFNGDLLYEPWEVLDDHGKPFTYFESYWAKCLTMPFEPESPLLP-PRRLT 175

Query: 185 TGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
             P    +     +   +          +   +  G  NA   L  F       Y   R 
Sbjct: 176 AAPAGIVHSLTPDELGLEDEADKSSNALLARAWAPGWSNADKALEAFLAGPFLNYSRNRH 235

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWREFY 291
                 TS LSP+L  G +S R+ ++ ++   V    D  +  +     ++  + +RE+ 
Sbjct: 236 EIDGPTTSLLSPHLHFGEVSVRKVFHSVRRLQVLWAKDGSMLGEESINYFMRSIGFREYS 295

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R+L   +P     +  +   +   W  D  L +AW+QG TG+P++DA MR+L   GW+HN
Sbjct: 296 RYLCFNFP-FTHERSLLSNLKSFPWRVDEGLFKAWRQGRTGYPLVDAGMRELWATGWLHN 354

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R+ NP
Sbjct: 355 RVRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMDNP 414

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKK 465
             +G + DP G ++R WLPEL  +PT++IH P             +L  NYP P+V+   
Sbjct: 415 QTEGYKHDPLGEYVRRWLPELVRLPTEWIHHPWDAPPGVLRAAGVELGSNYPRPVVEVAA 474

Query: 466 ACHHTLNQ 473
           A     + 
Sbjct: 475 ARERLRDA 482


>gi|302693713|ref|XP_003036535.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8]
 gi|300110232|gb|EFJ01633.1| hypothetical protein SCHCODRAFT_49182 [Schizophyllum commune H4-8]
          Length = 587

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/515 (32%), Positives = 261/515 (50%), Gaps = 52/515 (10%)

Query: 11  LVWLR-NDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + W+R  D+RI DN+AL  A   +      ++A+++ +P+ +  H   AR+  F+  +L 
Sbjct: 72  VYWMRMQDMRIEDNRALALASAEAQKTKKPLVAIYVISPQDYAAHDRGARRIDFMLRNLR 131

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L +  I       +        + S        KL+ N +YE++E+RRD  + + 
Sbjct: 132 IIKIKLDEMHIPLHVVTHAPRSTLPRRIISLLSLVGAHKLYANIEYEVDELRRDIQVCEI 191

Query: 127 LQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            +   +  +F  D  ++ PG  +      Y VY+PF++  +  L  +  R L        
Sbjct: 192 AKKDGMKATFVHDKCIVEPGVAVKKDGSYYAVYSPFQRLWLATLNDSQGRFLDPSPEPAA 251

Query: 186 GPVTPSNIPRFFDY-----------------PFQAIDPMFPIGEQNALHILRKFCKE--- 225
              +     +  D                    + +   +P GE+ AL +L +F      
Sbjct: 252 NSKSVRKHEKLGDLFEGNVPETVEGFELAEDDRKKMAEYWPAGEEAALLVLDRFLSTKSR 311

Query: 226 ---------------------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
                                +++ Y ++RD      TS++SPYL+ GV+S R+C     
Sbjct: 312 PEQAGGVNPLSQGAEESDKYSRIHVYGDERDRVNADTTSRISPYLASGVISARRCVRSTM 371

Query: 265 EE--FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSH 321
           +      +     +G   W+ EL WR+FY  ++  +P V MG+PFI     I W   D  
Sbjct: 372 KLTGSSKVDGGRNTGIGRWVQELAWRDFYVSVLVGFPRVSMGRPFIEKYADIVWEGGDIS 431

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
            ++AWK+G TG+PI+DA MR +   GW+HNRLRM TA FLVKDL+VDWR+GE Y+M  L+
Sbjct: 432 EVRAWKEGRTGYPIVDAGMRCIKETGWLHNRLRMTTAMFLVKDLMVDWRVGERYYMQNLI 491

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           DGDLASNNGGWQW+ASTG D  PYFRIFNP +Q ++ DP+G FIR +LPEL ++  + IH
Sbjct: 492 DGDLASNNGGWQWSASTGVDPAPYFRIFNPYLQSEKADPEGDFIRMFLPELKSLKGKEIH 551

Query: 442 APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            P + + K    L YPLPIV H +A    + ++ A
Sbjct: 552 NPPANVAKR---LGYPLPIVKHSEAKDRAIRRFKA 583


>gi|256425909|ref|YP_003126562.1| deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
 gi|256040817|gb|ACU64361.1| Deoxyribodipyrimidine photo-lyase [Chitinophaga pinensis DSM 2588]
          Length = 434

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 165/473 (34%), Positives = 231/473 (48%), Gaps = 48/473 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
           +V+L WLR DLR+ D+ ALY A  + +  V+ VF+              R+  FI+  L 
Sbjct: 4   TVNLCWLRRDLRLLDHAALYHALKSGN-PVVPVFVFDTNILNDLDDKHDRRVTFIHDILE 62

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q+ LS+ G          +    +  + Y  +  V ++F N  YE   V+RD  + K 
Sbjct: 63  DLQEKLSKLGSTLDV----FYGTPQQAFEHYTREYDVQEVFTNIDYEPYAVKRDSDIAKI 118

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-RL 184
           L+ + I    + D V+     +L    Q Y V+TP+ K     L    L+  PV    R 
Sbjct: 119 LKAKNIHFHLYKDHVIFDHSEVLKDNGQPYTVFTPYSKKWKSLLTDFYLKPYPVEKYFRN 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                   IP      FQA    FP                 +  Y + RDIP I+GTS 
Sbjct: 179 FYKQKAKKIPSLRALGFQAGFRGFPPV---------NVKDNILKNYDKTRDIPGIEGTSH 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           L  +L  G +S R           DL  +  +   ++L ELIWR+F++ ++  +P V   
Sbjct: 230 LGVHLRFGTISIR-----------DLAERANTLNETFLGELIWRDFFQMILWHFPHVVT- 277

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F    + I+W  +    Q W  G TG+PI+DA MR+LNT G+MHNR+RMITASFL K 
Sbjct: 278 QSFRREYDNIQWRNNEKEFQRWCDGETGYPIVDAGMRELNTTGFMHNRVRMITASFLTKH 337

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +LLD DLA+NNG WQWAA  G D+ PYFR+FNPT+Q +RFDP   +
Sbjct: 338 LLIDWRWGEAYFAKKLLDYDLAANNGNWQWAAGCGCDAAPYFRVFNPTLQTQRFDPDFEY 397

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR W+PE   +                    Y  P+V H++A    L  Y AA
Sbjct: 398 IRKWVPEFEEL-------------------TYVKPMVVHEQARKRVLEVYKAA 431


>gi|107028642|ref|YP_625737.1| deoxyribodipyrimidine photolyase [Burkholderia cenocepacia AU 1054]
 gi|116690199|ref|YP_835822.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia HI2424]
 gi|105897806|gb|ABF80764.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
           AU 1054]
 gi|116648288|gb|ABK08929.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
           HI2424]
          Length = 519

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 147/479 (30%), Positives = 232/479 (48%), Gaps = 23/479 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A  +++  +VW R+DLR+TD  AL  A   S   ++ VF+          +      ++
Sbjct: 29  SAKPSVAPAIVWFRDDLRVTDQPALTRAVE-SGRPLVCVFVDDTGAGAGPALGGAARWWL 87

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  +L++        +     D+   ++          +++NR+Y   +   D 
Sbjct: 88  HGSLAGLDAALARHDGRLLLLRG----DAQREIERVVGDTGAAAVYWNRRYAQPQRDADA 143

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L+  L+ R +  +S + S+L  P  +L  +   Y+V+T + +A  ++   A     P  
Sbjct: 144 ALKASLKARGVTVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRTVAAPLPAPER 203

Query: 181 AIRLTGP----------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                 P             +  P   D+     D      E  AL  L  F    +  Y
Sbjct: 204 IAFHPWPQAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTTSLAGY 263

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD P    TS+LSP+L  G +SPRQ W+ ++           + A  +L+EL WREF
Sbjct: 264 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAVYAAHADKFLSELGWREF 323

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T GWMH
Sbjct: 324 SYTLLYHFPALATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 382

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFN
Sbjct: 383 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 442

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           P  QG++ DP G ++R W+PEL  +    IHAP              L ++YP P+V+H
Sbjct: 443 PVAQGQKCDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGIDYPAPLVEH 501


>gi|110679555|ref|YP_682562.1| deoxyribodipyrimidine photolyase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455671|gb|ABG31876.1| deoxyribodipyrimidine photolyase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 472

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 160/482 (33%), Positives = 233/482 (48%), Gaps = 27/482 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + S  LVW R DLR++D+ AL AA  + +  VI VFI   +Q    G + R    +   +
Sbjct: 2   STSPVLVWFRRDLRLSDHPALDAAVKSGN-PVIPVFIHD-DQVETLGAAPR--WRLGLGI 57

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + ++L          +      ++E L +  L+     +F++R Y+   V RD  ++ 
Sbjct: 58  GHLSETLEGLNSRLILRRGP----ALETLRTLILETGAGAVFWSRLYDPAAVERDTEVKA 113

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   I  +SF   ++  P ++       YKVYTPF   +    V A L +        
Sbjct: 114 ALKQDGIDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVDAPLSAPSRIDAPA 173

Query: 185 TGP----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             P    ++  N+    D     + P   +GE  A   L  F  + V  Y   RD PAI 
Sbjct: 174 AWPGSDTLSDWNMGAAMDRGAAVVAPYVRLGEAAAQTRLNTFIDKIVAGYDTTRDQPAID 233

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LS  L++G +SP QCW            + K GA ++L EL+WREF  HLM   P 
Sbjct: 234 GTSGLSENLALGEISPHQCWYAGLR----AREEEKPGAETFLKELVWREFAYHLMHHTPR 289

Query: 301 VCMGKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +  G  +    +   WN+D     ++ W+QG TG   +DAAMR++   G MHNR RMI A
Sbjct: 290 ILTGN-WKEDWDSFPWNRDETTQAVRRWQQGRTGIQFVDAAMREMYVTGRMHNRGRMIVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S+L K LL DW+IG ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q  +F
Sbjct: 349 SYLTKHLLSDWKIGLKWFEDCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           D    +++ W+ E    PTQ    Y  A P +W    D   +YP P+V   +     L  
Sbjct: 409 DKNRQYVKRWVAEERRAPTQTALSYFDAIPRAWGLSAD--QDYPAPVVAADEGRKRALEA 466

Query: 474 YY 475
           Y 
Sbjct: 467 YE 468


>gi|94965681|emb|CAG28805.1| cryptochrome1 [Brassica napus]
 gi|95140047|emb|CAC87903.2| cryptochrome 1 [Brassica napus]
          Length = 680

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/500 (28%), Positives = 232/500 (46%), Gaps = 27/500 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
             +      +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++
Sbjct: 4   SCSGGGGCSIVWFRRDLRVEDNPALAAAVRAG--PVIAVFVWAPEEEGHYQPGRVSRWWL 61

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL Q+  SL   G      + +   DS+  L         +++F+N  Y+   + RD 
Sbjct: 62  KNSLAQLDSSLRSLGTCLITKRST---DSVASLLEVVKSTGASQIFFNHLYDPLSLVRDH 118

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             +  L    +  KSF+  +L  P  + +   + + ++  F +  +      +   LP P
Sbjct: 119 RAKDALTAEGIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-P 177

Query: 181 AIRLTGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234
              ++G V+          D   +  + +    +  G  NA   L  F    +  Y + R
Sbjct: 178 KKIISGDVSKCVADTLIFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNR 237

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREF 290
                  TS LSP+L  G +S R+ ++ L+ + V    +           +L  +  RE+
Sbjct: 238 RKADSATTSFLSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAGEESVNLFLKSIGLREY 297

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R++   +P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H
Sbjct: 298 SRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLH 356

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           +R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI N
Sbjct: 357 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDN 416

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  +G +FDP G ++R WLPEL+ +PT++IH P +  +        +L  NYP PIV   
Sbjct: 417 PQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPIVGLD 476

Query: 465 KACHH---TLNQYYAAKKQS 481
           +A       L+Q +  +  S
Sbjct: 477 EAKARLHEALSQMWQLEAAS 496


>gi|229918519|ref|YP_002887165.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b]
 gi|229469948|gb|ACQ71720.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b]
          Length = 450

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/471 (35%), Positives = 245/471 (52%), Gaps = 28/471 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + W R+D R+TDN  L+    + +    +  VF   P+      +   +  + ++++   
Sbjct: 4   ICWFRSDFRLTDNHMLHRVLKDMEEGDDLDFVFWLNPKYCHPFEV---RHDYFFSTMRTF 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L  KG+  +       D  ++ L    +      L++N +Y     +RD  + + L 
Sbjct: 61  MDDLEAKGLGLRVLVAETEDAFVKQLGEMDV------LYFNAEYVEPFKQRDDRVIEALS 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V      D  L  P +    +   YKV+TPF+KA      +       V   RL+  +
Sbjct: 115 EDVKVVRLLDRHLFHPDAFRTKSGDPYKVFTPFKKAAYA---EQPPAPYEVDVNRLSQYI 171

Query: 189 -TPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + +  P      F+     +   GE  A   L +F  +++  Y E+RDIP+I GTS+LS
Sbjct: 172 RSKNEQPSELKELFKRCKREWKGLGETEAKKRLTRFVNDRMVDYDEKRDIPSIAGTSRLS 231

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  GVLS R    ++      L  +   G  ++ +EL+WREFY  +MA +  +   +P
Sbjct: 232 PYLRTGVLSIRTITEQV------LSARQSKGRDTYYDELLWREFYYMVMAKFHGL-KDQP 284

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    + IEW  +    + W  G TG+PI+DAAMRQLN  GWMHNRLRMI ASFL K LL
Sbjct: 285 FNDKYKSIEWEDNEEQFEKWCNGETGYPIVDAAMRQLNETGWMHNRLRMIVASFLSKHLL 344

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE YF  +L+D + ASN GGWQWAAS G D+VPYFRIFNPT Q +RFDP GTFIR
Sbjct: 345 LDWRKGERYFEQKLIDYEAASNIGGWQWAASVGTDAVPYFRIFNPTTQSERFDPDGTFIR 404

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            ++PEL +V  + IH P           +Y +P+VDHK+A    L ++ A 
Sbjct: 405 KYVPELKHVSDKSIHFPD-----PSERDDYAMPLVDHKEARERALERFKAL 450


>gi|326332769|ref|ZP_08199030.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium
           Broad-1]
 gi|325949468|gb|EGD41547.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium
           Broad-1]
          Length = 446

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/476 (33%), Positives = 230/476 (48%), Gaps = 32/476 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+W R DLR+ D+ AL AA       V+ +F+  P        S R+   + ASL 
Sbjct: 1   MTTSLMWFRRDLRLGDHPALQAAAAEGQ--VVPLFVLDPRLAG----SGRRWERLLASLA 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++      ++ Q        D  E +     +   +++  + +      RRD  +E+R
Sbjct: 55  ALREETDGALVIRQ-------GDPAEVVADVAAEAGASQVHVSTETTPYGRRRDAAVEQR 107

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    I          + PG + N +   Y+V+TPF +A  ++  +A             
Sbjct: 108 LAAAGIGLVGTGSPYAVTPGRVRNASGAPYRVFTPFLRAWREHGWRAP-----------A 156

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           G      + +    P          GE+ ALH    FC E +  Y E RD P +  TS+L
Sbjct: 157 GDPEVEWMTKLESDPL-PSHSDQEAGERAALHRWEDFCAEDLAGYAESRDRPDLDRTSRL 215

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L  G + PR     L +               ++ EL WREFY  ++   P     +
Sbjct: 216 SVALKYGEIHPRTL---LADLGTHGTGASGEDVERFVAELAWREFYADVLWHDPGSAW-R 271

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 + + +  D  LL+AWK G TG+P +DA MRQL   GWMHNR+RM+ ASFLVKDL
Sbjct: 272 DLKDGLDGMRYEDDPELLEAWKSGTTGYPFVDAGMRQLLAEGWMHNRVRMVVASFLVKDL 331

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W +G  +FM  LLDGD+ASN+ GWQWAA TG D+ PYFR+FNP  QG RFDPQG ++
Sbjct: 332 HMWWPVGARHFMDHLLDGDMASNSHGWQWAAGTGTDAAPYFRVFNPVTQGIRFDPQGDYV 391

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R W+PEL ++P    H P  W     L+  YP P+VDH +     L++    K+ +
Sbjct: 392 RRWVPELRHLPGAAAHEP--WRHSEGLAHGYPEPVVDHAEERREALDRLAELKEST 445


>gi|147810570|emb|CAN71971.1| hypothetical protein VITISV_015253 [Vitis vinifera]
          Length = 641

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/486 (28%), Positives = 232/486 (47%), Gaps = 26/486 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M + +     +VW R DLR+ DN AL  A       V+ VFI  P++  Q         +
Sbjct: 1   MSSDSR---TVVWFRRDLRVDDNPALATAAKEG--SVLPVFIWCPKEEGQFYPGRVSRWW 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL+ +++SL   G      +  +   +IE L         TKL YN  Y+   + RD
Sbjct: 56  LKQSLMHLKQSLRSLGADLLLIKAES---TIEALLECIHAIGATKLVYNHLYDPISLVRD 112

Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++++L +  +  +S++  +L  P  I +     +  +  +    +   ++      P 
Sbjct: 113 HSIKQKLMELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSXQMEFVSLLPPW 172

Query: 180 PAIRLTGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQ 233
             +   G V   +I      D   ++ + +    +  G  NA   L +F ++ ++ Y + 
Sbjct: 173 RLVPAAGKVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKX 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----GAFSWLNELIWRE 289
           R       TS LSPYL  G LS R+  + ++ + +  + +  S        +L  +  RE
Sbjct: 233 RLKVEGNSTSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLRE 292

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R+L   +PS    +P +   +   W+      +AW+QG TG+P++DA MR+L   GW+
Sbjct: 293 YSRYLCFNFPS-THERPLLSNLKHFPWHAXHVHFKAWRQGRTGYPLVDAGMRELWATGWI 351

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ 
Sbjct: 352 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLD 411

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           +P IQG  +DP+G ++RHWLPEL  VPT++IH P             +L  NYP PI++ 
Sbjct: 412 SPEIQGSNYDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEI 471

Query: 464 KKACHH 469
             A   
Sbjct: 472 DLARER 477


>gi|302141959|emb|CBI19162.3| unnamed protein product [Vitis vinifera]
          Length = 691

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/493 (29%), Positives = 225/493 (45%), Gaps = 27/493 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        VI VFI  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G      + +   D +  L         T LF+N  Y+   + RD   +
Sbjct: 60  LAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    +   SF+  +L  P  + +     +  ++ F    +      +   LP P   
Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLP-PKRI 175

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             G V+  PS+   F D   +  + +    +  G  NA   L  F    +  Y +     
Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293
               TS LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GWMH+R+
Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465
           +G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  K
Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474

Query: 466 AC-HHTLNQYYAA 477
           A     L++ + A
Sbjct: 475 ARLQEALSEMWQA 487


>gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis]
          Length = 621

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/498 (24%), Positives = 198/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALREVIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +         L     I+        +     + LI  +   ++    + A  +
Sbjct: 116 LASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQ 233
           +   TP +      Y   +++ +           +P GE  AL  L +  + K +    +
Sbjct: 176 SKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  D      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQMYQQ 490


>gi|330991596|ref|ZP_08315547.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
 gi|329761615|gb|EGG78108.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
          Length = 465

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/483 (29%), Positives = 223/483 (46%), Gaps = 29/483 (6%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  +  ++W R+DLR+ DN AL  A  +    VI +++  P         +    +++ +
Sbjct: 2   SQSAPTIMWFRDDLRLADNPALSDAAASG--PVICLYVHDPALA----PGSAARWWLHGA 55

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  ++  L  +G          +   +        Q     + +NR+Y     + D  ++
Sbjct: 56  LTALEDDLRARGGRLCIMAGPAWQCVLR----LARQAGAGAVVWNRRYGGAARQVDARIK 111

Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAI 182
             L+   V  +S   ++L  P  +       ++VYTP+ +A+         L        
Sbjct: 112 LALKDMGVQARSHRGNMLHEPWQVRTRQGAPFRVYTPWWRAVRAMGAPLPPLPVPAALGF 171

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQR 234
               P     +        Q   P         +  GEQ A   L  F   ++  Y   R
Sbjct: 172 AALPPAVEDGLVSLSALGLQPTRPDWAQGLRDTWQPGEQAAHARLATFMATRLPGYARLR 231

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D+PA   TS LSP L  G +SPRQ W+ +     +      +    +L+E+ WR+F    
Sbjct: 232 DLPARPATSGLSPCLRFGHISPRQIWHAV-----EAQGDVDADGMCFLSEVGWRDFAHAT 286

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +   P +   +   P  +++ W  D   L+AW+QG TG+PI+DA MR+L   GWMHNR+R
Sbjct: 287 LFDCPDMAT-RSLRPEYDRMPWRTDPAGLRAWQQGRTGYPIVDAGMRELWHTGWMHNRVR 345

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFL K LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFNP +Q
Sbjct: 346 MIVASFLTKHLLLDWRAGERWFADTLVDADGASNPFNWQWVAGCGLDAAPYFRIFNPVLQ 405

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           G++FDP+G ++R W+PE+ ++  + +H P  +     +   YP P+VD        L  +
Sbjct: 406 GEKFDPEGDYVRRWVPEIAHLAGRAVHTPWKFPH---VHRGYPAPVVDLADGRARALAAW 462

Query: 475 YAA 477
              
Sbjct: 463 KTL 465


>gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142]
 gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142]
          Length = 491

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/490 (26%), Positives = 232/490 (47%), Gaps = 31/490 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLRI D++ +Y A     A +I ++     Q++            +  F+  S+
Sbjct: 12  LIWYRNDLRIHDHEPMYQAIKEG-ALIIPLYCFDIRQFKTTSYGFPKTGNFRGQFLLESV 70

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL   G      +        + +     +  +  ++++ +    E   +K +++
Sbjct: 71  ANLRQSLQDLGSNLIVRKG----YPEKIIPELIKELEIDAVYFHEEVTSEETTVEKEVKQ 126

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+  +V  + F  S L     +     Q+ +V+T FRK + ++         P+  +  
Sbjct: 127 ALKPLKVKVQGFWGSTLYHWDDLPFEVNQLPEVFTSFRKKVEKSSTVNPTLITPIKLLPF 186

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEKV--YYYVEQRD- 235
              +    IP   +   +  D        F  GE   +  L+++  E+     Y E R+ 
Sbjct: 187 PN-IELGKIPTLEELGLEKPDYHSRGMLNFKGGETGGIKRLKEYFWERNCLKEYKETRNG 245

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ SP+L+ G LSPR  +  + +++ D  +K  S  +  + EL+WR+++R + 
Sbjct: 246 MLGADYSSKFSPWLAQGCLSPRYIYEEV-QKYEDARVKNNS-TYWLIFELLWRDYFRFIC 303

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A + +    +  +   + I W +D    + W++  TG+P++DA MR++   G+M NR R 
Sbjct: 304 AKHGNKIFYESGLQGLD-IPWKEDKERFKLWQESKTGYPLVDANMREIAATGFMSNRGRQ 362

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR FN   Q 
Sbjct: 363 NVASFLTKNLGINWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIPKQS 421

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K +DP+G ++RHWLPEL  +P   IH P              + ++YP P+VD  K+   
Sbjct: 422 KDYDPKGDYLRHWLPELKMIPGDKIHEPWKLSQDEQKRYNVRIGVDYPRPVVDFFKSVKA 481

Query: 470 TLNQYYAAKK 479
               Y +A K
Sbjct: 482 NEKVYNSATK 491


>gi|284989430|ref|YP_003407984.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM
           43160]
 gi|284062675|gb|ADB73613.1| Deoxyribodipyrimidine photo-lyase [Geodermatophilus obscurus DSM
           43160]
          Length = 454

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/479 (32%), Positives = 224/479 (46%), Gaps = 30/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNS--DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M   L+W R DLR+ D+ AL  A   +  D  V+ VF+  P  W   G+  RQ  F+   
Sbjct: 1   MPTALLWFRRDLRLADHPALLDAREAAGPDGAVVPVFVFDPRLWGPSGLPRRQ--FLLDC 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +       G            D    L     +     +  +         RD  +E
Sbjct: 59  LADL-------GAQVDGALVMRSGDPARVLPDLVREVGAGSVHVSADTGPYGRERDAAVE 111

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           + L   V          + PG +       ++V++PF +A  ++  +      P P    
Sbjct: 112 RALGD-VPLVRTGSPYAVTPGRVTKSDGTPFRVFSPFARAWREHGWRD-----PAPRPDA 165

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               T        + P      + P GE  A    R+F  E++  Y   R+ P   GTS+
Sbjct: 166 VPWSTGVRSEDPPEVPGLDGVRLPPAGEAAASDAWRRFRAERLEGYKSTRNTPGSDGTSR 225

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL  G + PR     L++            A S+ NEL WR+FY  ++   P     
Sbjct: 226 LSAYLKYGCVHPRTLLADLEDL-------DSDSADSFRNELAWRDFYADVLWHRPESAR- 277

Query: 305 KPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           +P       + ++          AW +G TG+PI+DA MRQL    ++HNR+RMI ASFL
Sbjct: 278 EPLDERMHAMAYDTGPDADERFAAWARGRTGYPIVDAGMRQLLGEAYVHNRVRMIIASFL 337

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDL VDWR G  YFM  L+DGDLASNN GWQW A TG D+ PY+R+FNPT QG+ FDP 
Sbjct: 338 VKDLHVDWRRGARYFMQHLVDGDLASNNHGWQWVAGTGTDASPYYRVFNPTRQGREFDPD 397

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           G ++R W+PEL +VP +++H P  WL  + +   YPLPIVDH +     L +Y   + +
Sbjct: 398 GDYVRRWVPELRDVPARHVHEP--WLAPDGVPDGYPLPIVDHAEERRVALERYEQVRDR 454


>gi|209559671|ref|YP_002286143.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           NZ131]
 gi|209540872|gb|ACI61448.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           NZ131]
          Length = 469

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 173/479 (36%), Positives = 242/479 (50%), Gaps = 22/479 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLRI D KAL  A   S +  + VF    EQ      S  QS FI  S+L  
Sbjct: 2   VSVMWFRRDLRIDDQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFIT-SVLAF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K L  +GI              + L         T +++N         RD+   +  +
Sbjct: 59  RKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQKAAQFFK 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   ++ D  L     I+N + Q YKV+TP+ +       +  ++ + +   R    
Sbjct: 116 KNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIK-VELSQGRWLNL 174

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            TP ++ R  +  F+            A   L +F ++++  Y   RD PA  GTS+LSP
Sbjct: 175 ETPDDVLRTVE-SFKDEKYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSP 233

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L IG +  R  ++ +++           G  ++L EL WR+FY  +   YP     +P 
Sbjct: 234 FLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPDQ-KTQPI 286

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASFL KDLL 
Sbjct: 287 QKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLC 346

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           D R+GE+YF  QL+D D ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP+G FI+ 
Sbjct: 347 DGRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKA 406

Query: 428 WLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +LP+L +VP  Y+  P              +  +Y  PIVDH K     + +Y  AK++
Sbjct: 407 YLPQLEHVPENYLLEPGKMPKNLQESVSCIIGTDYAQPIVDHAKQREQAIAKYEWAKEK 465


>gi|325285379|ref|YP_004261169.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489]
 gi|324320833|gb|ADY28298.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga lytica DSM 7489]
          Length = 429

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 148/471 (31%), Positives = 221/471 (46%), Gaps = 51/471 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + + W R DLRI DN AL  A  + +  V+ VFI       +      +  FI+ ++  
Sbjct: 4   KISVFWFRRDLRIEDNTALCNALKSGN-PVLPVFIFDENILNELDADDARVTFIHKTISA 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  +L +          +      + + +Y     V ++F+N+ YE     RD+ +   L
Sbjct: 63  INLTLKEYNSGVLCLHTTPELAWKKIVSTY----NVERVFFNKDYEPYARERDQKITSFL 118

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + +  KS  DSV+     +L +    Y VYTP++   +      DL        +   
Sbjct: 119 NDKSIKVKSNKDSVIFEENDVLKNDGDPYTVYTPYKNKWLSKFTP-DLIEDKKCDFKGKL 177

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                + P   +  F A +                +  E +  Y E+RD P+   T+ L 
Sbjct: 178 LEFNVDFPSLENLGFSASNITVEP-----------YNLEHLDIYAEKRDFPSDDITTYLG 226

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGK 305
           P+L  G +S R+             I+   G  S +L+EL+WREF+  ++  +P V    
Sbjct: 227 PHLRFGTVSVRKL------------IRGLDGLESVFLSELVWREFFTQILFHFPKVVTQN 274

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    + I+W  +    + W  G TG+P++DA MRQLN  G+MHNR+RMITA FL K L
Sbjct: 275 -FRSKYDGIKWRNNKEDFEKWCTGNTGYPMVDAGMRQLNKTGYMHNRVRMITAGFLCKHL 333

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DW+ GE YF  +LLD +LASNNG WQWAA TG D+ PYFRIFNP  Q K+FD    ++
Sbjct: 334 LIDWQWGEAYFAKKLLDYELASNNGNWQWAAGTGCDAAPYFRIFNPITQLKKFDKDFKYV 393

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +HW+PEL+                     NYP P+V+HK A    L  Y  
Sbjct: 394 KHWIPELD-------------------GFNYPQPMVEHKAARERALKVYKE 425


>gi|260940315|ref|XP_002614457.1| hypothetical protein CLUG_05235 [Clavispora lusitaniae ATCC 42720]
 gi|238851643|gb|EEQ41107.1| hypothetical protein CLUG_05235 [Clavispora lusitaniae ATCC 42720]
          Length = 548

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 159/490 (32%), Positives = 256/490 (52%), Gaps = 23/490 (4%)

Query: 12  VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            W   DLR+ DN  L  A      +   ++  ++  PE    H +   Q ++ + SL Q+
Sbjct: 63  HWFMRDLRVRDNNGLSHANKLALKNGIPMLCFWVHCPEMELAHNVGDFQKYYRFLSLHQL 122

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK-LLEKRL 127
           Q+ L++  I     +     D I  +     +  V+ LF N +YE++E+R     + K L
Sbjct: 123 QEKLAKLNINLIIVKAERRADIIPQVLQLLQKYGVSHLFSNLEYEVDELRLATTAMTKFL 182

Query: 128 QHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRS------LPVP 180
           + ++      +S ++ PG++   +    Y V++P+ +A +  + Q            P+ 
Sbjct: 183 EEKISFTPCHNSCVVLPGALKTKSKGTQYAVFSPWFRAWMAYVDQELFSKEHFEYDSPIK 242

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCK-EKVYYYVEQRDIPA 238
             +              D   +     +  IGE  AL  L ++ + +++  Y ++RD   
Sbjct: 243 LEKQLSVSQQDLEIPDVDVDKERFHKYWKMIGEDGALEQLAEYIESDEINKYKDERDFLD 302

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           ++  S +S ++S G +S R     L++  +  +L     SG F W+ ++ WR+FY+H++ 
Sbjct: 303 LESVSNMSVHISSGTISTRTILQELRQNKKMKNLHTLKTSGVFEWIRQISWRDFYKHIIC 362

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           ++P VCM KPF    + + W  D    + W  G TGFPI+DA MR LN  G+++NR R+I
Sbjct: 363 YWPYVCMFKPFHLEYDDLSWEYDEDHFERWCSGNTGFPIVDACMRCLNETGYLNNRGRLI 422

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K+LL+DWR GE+YF+S+L+D D  SNNGGW +A+STG D  PYFRIFNP  Q +
Sbjct: 423 VASFLSKNLLIDWRNGEQYFLSKLIDSDFCSNNGGWGFASSTGVDPQPYFRIFNPWTQSE 482

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           RFDP G FI+ W+PEL +V  + +H   S    + L  NY  PIV HK+     L +Y A
Sbjct: 483 RFDPDGEFIKKWVPELVDVSPKMLHKETS----DPLCANYTAPIVSHKETRSRALEKYKA 538

Query: 477 A----KKQSL 482
           A    +K++L
Sbjct: 539 AMEEGRKKNL 548


>gi|161779368|gb|ABX79355.1| cryptochrome 1 [Vitis vinifera]
          Length = 681

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/493 (29%), Positives = 225/493 (45%), Gaps = 27/493 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        VI VFI  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G      + +   D I  L         T LF+N  Y+   + RD   +
Sbjct: 60  LAHLDSSLRSLGTPLITKRST---DCISSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    +   SF+  +L  P  + +     +  ++ F    +      +   LP P   
Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLP-PKRI 175

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             G V+  PS+   F D   +  + +    +  G  NA   L  F    +  Y +     
Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293
               TS LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GWMH+R+
Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465
           +G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  K
Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474

Query: 466 AC-HHTLNQYYAA 477
           A     L++ + A
Sbjct: 475 ARLQEALSEMWQA 487


>gi|224084664|ref|XP_002307379.1| predicted protein [Populus trichocarpa]
 gi|222856828|gb|EEE94375.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/492 (28%), Positives = 228/492 (46%), Gaps = 27/492 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        V+AVF+  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVAVFVWAPEEEGHYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G      + +   DS+  L         T+L +N  Y+   + RD   +
Sbjct: 60  LAHLDSSLRSLGTSLVTKRST---DSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRAK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    +  +SF+  +L  P  + +   + +  +  F +  +      +   LP P   
Sbjct: 117 EILTAQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLP-PKRI 175

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           ++G V+  PS    F D   +  + +    +  G  NA   L  F    +  Y   R   
Sbjct: 176 ISGDVSRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293
               TS LSP+L  G +S R+ ++ ++ + V    +           ++  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 296 LSFNHP-CTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ ASF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  
Sbjct: 355 RVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465
           +G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  K
Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAK 474

Query: 466 AC-HHTLNQYYA 476
                 L++ + 
Sbjct: 475 VRLEEALSEMWQ 486


>gi|295134157|ref|YP_003584833.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
 gi|294982172|gb|ADF52637.1| deoxyribodipyrimidine photo-lyase [Zunongwangia profunda SM-A87]
          Length = 437

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 143/474 (30%), Positives = 217/474 (45%), Gaps = 49/474 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++ W R DLR+ DN    A+    +  V+ +FI  PE          +  FI+ +L  
Sbjct: 5   KINIFWFRRDLRLDDNVGFLASLKE-EHPVMPIFIFDPEILDNLPEDDARVTFIFETLQD 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L +                 E          + K+F NR YE     RD+ ++K L
Sbjct: 64  MRNELQENH---HSSIGMYHGKPEEVFKELLKNYSLGKVFTNRDYEPYAKDRDEKIQKLL 120

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLT 185
            ++ V  ++F D V+     ++      Y VYTP+ K  +++   +DL+       +   
Sbjct: 121 DENNVKFETFKDQVIFEKDEVVKGDGDPYVVYTPYMKTWMEHFKNSDLKIHYTSQFLDNL 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTS 243
              T        D  F+      P            F      +  Y + R+IP+ +GTS
Sbjct: 181 VQNTRLPNLSLSDIGFKKSSLKVP-----------DFDTTPSLIQRYEDTRNIPSKEGTS 229

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +L P+L  G +S R+   +                 ++L EL+WREF+  ++   PS   
Sbjct: 230 RLGPHLRFGTVSVRKMVKKA----------NNEKNKTFLQELVWREFFMQVLYHNPSTVT 279

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    + I+W  +    + WK G TGFP++DA MRQLN  G+MHNR+RM+  SFL K
Sbjct: 280 D-AFKKKYDNIQWRNNKEEFEKWKNGKTGFPLVDAGMRQLNKSGFMHNRVRMLVGSFLCK 338

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF  +LLD +++SN G WQW A +G D+VPYFRIFNPT Q  +FD    
Sbjct: 339 HLLIDWRWGEAYFAEKLLDYEMSSNVGNWQWVAGSGVDAVPYFRIFNPTTQIDKFDKDKK 398

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ W+ E                     S +YP  +VDHK+A    L+ Y  A
Sbjct: 399 YIKEWVEEFG-------------------SDDYPDKMVDHKEARERALSTYKEA 433


>gi|225459298|ref|XP_002285792.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 681

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/492 (28%), Positives = 222/492 (45%), Gaps = 25/492 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        VI VFI  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G      + +   D +  L         T LF+N  Y+   + RD   +
Sbjct: 60  LAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    +   SF+  +L  P  + +     +  ++ F    +      +   LP   I 
Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRIN 176

Query: 184 LTG-PVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                  PS+   F D   +  + +    +  G  NA   L  F    +  Y +      
Sbjct: 177 PGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKAD 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R+L
Sbjct: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYL 296

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GWMH+R+R
Sbjct: 297 SFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           ++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  +
Sbjct: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFE 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKKA 466
           G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  KA
Sbjct: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAKA 475

Query: 467 C-HHTLNQYYAA 477
                L++ + A
Sbjct: 476 RLQEALSEMWQA 487


>gi|218191203|gb|EEC73630.1| hypothetical protein OsI_08136 [Oryza sativa Indica Group]
          Length = 665

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 135/494 (27%), Positives = 218/494 (44%), Gaps = 42/494 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL +A    D  V+ VFI  P    Q         ++  SL  + 
Sbjct: 7   TVVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  +   ++E L         T+L YN  Y+   + RD  ++K L  
Sbjct: 65  QSLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSA 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  +SF+  +L  P  I + +   +  +  + +  ++  +       P   + + G +
Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDVSPSLAPWKLVPVPG-L 180

Query: 189 TPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                    D   ++          +   +  G +NA  +L +F    +  Y +      
Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSPYL  G +S R+ +  ++ + +    +  S A      ++  +  RE+ R+L
Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     K  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R
Sbjct: 301 CFNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK LL+ W  G +YF   LLD DL S+  GWQ+ + +  D     R+ NP I 
Sbjct: 360 VIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEIM 419

Query: 415 --------------GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSL 454
                         G+++DP G ++R W+PEL  +PT++IH P             +L  
Sbjct: 420 ENVIATYYALCMVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGF 479

Query: 455 NYPLPIVDHKKACH 468
           NYP PIVD   A  
Sbjct: 480 NYPKPIVDLHIARE 493


>gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
 gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
          Length = 477

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 163/485 (33%), Positives = 231/485 (47%), Gaps = 22/485 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFI 61
             S  L W R DLR+ DN  + AA   S A V  V++  P   +       ++  +  F+
Sbjct: 2   TASRVLFWHRRDLRLADNLGIQAAVEISPA-VTGVYVLDPALIQPPQSLPPMAPARLWFL 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL+++Q+     G      +     D ++ L     +     + +NR  E     RD+
Sbjct: 61  LESLIELQQRWRAAGSRLLILEG----DPVQVLPPLAERLGAEAVVWNRDVEPYSRERDR 116

Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            + KRLQ          D +L+PP  +   A   Y+VY PF +     +      ++  P
Sbjct: 117 QVAKRLQADGRKVVVDWDQLLIPPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPITIEAP 176

Query: 181 A--IRLTGPVTPSNIPR---FFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQR 234
           +  + L   + P   P       + FQ  +      GE  AL  L  F    +  Y   R
Sbjct: 177 SGLVDLHSDLVPDRDPLAALLHRHGFQGTEICPCRPGESAALEQLTLFADGPLSGYEPDR 236

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRH 293
           + P++ GTS LS  LS+G LSPRQ W   ++         +  A + W  EL WREFY+ 
Sbjct: 237 NFPSVVGTSYLSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAVWEQELGWREFYQQ 296

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +  +P +  G P+     +  W  +     +W++G TG PIIDAAMRQLN  GWMHNR 
Sbjct: 297 ALFHFPELADG-PYREQWRRFPWENNEAWFSSWREGMTGMPIIDAAMRQLNESGWMHNRC 355

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  P  RIFNP  
Sbjct: 356 RMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPAT 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q  +FD  G +IR W+PEL +V T+ +        +      YP P++ HK         
Sbjct: 415 QATKFDADGEYIRRWVPELRHVNTKDLLTGEIGGLERR---GYPEPLITHKTQQALFKTL 471

Query: 474 YYAAK 478
           Y   +
Sbjct: 472 YATIR 476


>gi|161898816|gb|ABX80391.1| cryptochrome 1 [Vitis riparia]
          Length = 681

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/493 (29%), Positives = 225/493 (45%), Gaps = 27/493 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        VI VFI  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVIPVFIWAPEEEGPYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G      + +   D +  L         T LF+N  Y+   + RD   +
Sbjct: 60  LAHLDSSLRSLGTPLITKRST---DCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    +   SF+  +L  P  + +     +  ++ F    +      +   LP P   
Sbjct: 117 EALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLP-PKRI 175

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             G V+  PS+   F D   +  + +    +  G  NA   L  F    +  Y +     
Sbjct: 176 NPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293
               TS LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GWMH+R+
Sbjct: 296 LSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465
           +G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  K
Sbjct: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAK 474

Query: 466 AC-HHTLNQYYAA 477
           A     L++ + A
Sbjct: 475 ARLQEALSEMWQA 487


>gi|256961892|ref|ZP_05566063.1| phrB [Enterococcus faecalis Merz96]
 gi|293382960|ref|ZP_06628878.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712]
 gi|293389551|ref|ZP_06634008.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613]
 gi|312907569|ref|ZP_07766560.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
           512]
 gi|312910187|ref|ZP_07769034.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
           516]
 gi|256952388|gb|EEU69020.1| phrB [Enterococcus faecalis Merz96]
 gi|291079625|gb|EFE16989.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712]
 gi|291081168|gb|EFE18131.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613]
 gi|310626597|gb|EFQ09880.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
           512]
 gi|311289460|gb|EFQ68016.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
           516]
          Length = 477

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 243/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
           IMS101]
 gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
           IMS101]
          Length = 498

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/498 (28%), Positives = 239/498 (47%), Gaps = 31/498 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHF 60
           + +V ++W RNDLRI D++ LY A    +A++I ++   P Q+ Q           ++ F
Sbjct: 2   SQNVIILWYRNDLRIHDHEPLYKALK-VNAQIIPIYCLDPRQFSQTDFGFPKTGVFRAKF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  S+  ++ +L + G      Q    D     +     Q     +F++++    EV+ +
Sbjct: 61  LLESIADLRNNLQKLGSNLVIFQ----DKPEIVIPRLAQQLSAKSVFFHQEVTELEVKVE 116

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           +L+ + L+   V  KSF    L  P  +     Q+ +++T FRK + +N       S+P 
Sbjct: 117 RLVHQALKQIGVRLKSFWGHTLYHPDDLPFEIKQLPELFTTFRKDVEKNSSVNPTFSIPK 176

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKVY--YYV 231
               L   +    +P   D   +           F  GE  A   ++ +  ++ Y   Y 
Sbjct: 177 KLSSLPK-IDVGELPTLSDLNLEKPPLNSQGVLEFKGGETAAKERVKNYFWQQDYLKVYK 235

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           E R+ +     +S+ SP+L++G LSPR  +  +KE     +       +  + ELIWR++
Sbjct: 236 ETRNGMLGANYSSKFSPWLALGCLSPRYIYEEVKEYEYQRV--KNQSTYWLIFELIWRDY 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +R +   + +    K  +     I W +D    + W+ G TGFP++DA MR+L   G+M 
Sbjct: 294 FRFICQKHGNKIFHKSGLQGI-AIPWQEDWEKFRKWQAGQTGFPLVDANMRELLATGFMS 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   ASFL K+L ++W++G E+F S L+D D+ SN G W + A  GND    FR FN
Sbjct: 353 NRGRQNVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
              Q K +DP+G +++HWLPEL  VP   +H P   L          + ++YP PI+D  
Sbjct: 412 IPKQAKDYDPEGKYVKHWLPELGKVPPAKVHEPWKLLPVEQDRFGVKIGVDYPEPIIDLW 471

Query: 465 KACHHTLNQYYAAKKQSL 482
           ++      +Y  A + +L
Sbjct: 472 QSVKENEKKYNRALQMTL 489


>gi|83718773|ref|YP_442347.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
 gi|257138547|ref|ZP_05586809.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
 gi|83652598|gb|ABC36661.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
          Length = 486

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/493 (31%), Positives = 236/493 (47%), Gaps = 24/493 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +  + +  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSFDSTAPAVVWFRDDLRVSDHPALARAAE-SGRPVIGVYVFD-ERAGGRALGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  + ++ +         +++NR+Y   +   D
Sbjct: 59  LHGSLRALDAALAGLGGRLVLLRGDEADTFVSFVAAL----GAGAVYWNRRYAFAQRALD 114

Query: 121 KLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  R V  ++F+ S+L  P  I+N   + Y+V+  + +A ++        + P 
Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRGAPPPPLAAPR 174

Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230
                  P   +      D    +   P +  G        E  A  +LR F   ++  Y
Sbjct: 175 RLNGGALPEALARRRVELDALGLEPTRPDWAGGLRDAWRFGEDAAHSLLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W    +         ++    +L+EL WREF
Sbjct: 235 ATERDRPGIASTSRLSPYVRFGNLSVRQIWQAAVDAHAH-RAATQADLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 CWAQLYRFPDLPR-RNLRHTLDGMPWRDDPAGLAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRARMVCASFLVKHLLIDWREGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QGK+FDP G ++R W+PEL  +P   IH P +            L   YP+P+V H 
Sbjct: 413 PVAQGKKFDPDGAYVRRWVPELAGLPPAAIHEPWAAPPAQLAAAGVRLGDTYPVPVVAHD 472

Query: 465 KACHHTLNQYYAA 477
            A    L+ +  A
Sbjct: 473 AARRRALDAFATA 485


>gi|315169765|gb|EFU13782.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1342]
          Length = 477

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 243/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L                ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D+A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDVANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNETLQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|305666673|ref|YP_003862960.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
 gi|88707478|gb|EAQ99722.1| deoxyribodipyrimidine photolyase-class I [Maribacter sp. HTCC2170]
          Length = 436

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 147/478 (30%), Positives = 225/478 (47%), Gaps = 55/478 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + + W R DLR+ DN  L  A       V+ +FI   E   Q   +  + +FIY ++  
Sbjct: 4   KISVFWFRRDLRLEDNTGLLKALQ-GPTPVLPIFIFDTEILCQVPKNDARVNFIYNTIET 62

Query: 68  VQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +  ++ +K    +  +H        IE  ++   +  +  +F N  YE + ++RD  +++
Sbjct: 63  LNTNIKKKHKSSIAIFH-----GKPIEIFNTLIKKHTIDAVFANHDYEPHALKRDTAIKE 117

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L +  +   ++ D V+     I+      Y VYTP++    +N             +  
Sbjct: 118 LLANNSISFHTYKDQVIFEKNEIIKSDKSPYVVYTPYKNKWKENFDPKIHLKNSSNCLES 177

Query: 185 TGPVTPSNI--PRFFDYPFQAIDPMFPIGEQNALHILRKFCKE--KVYYYVEQRDIP-AI 239
              V  +N+      D  F++     P           +F      +  Y   R+ P A 
Sbjct: 178 NNFVNNTNLPFFELRDIGFESSSITVP-----------EFIITITFIEGYETTRNYPGAT 226

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS++ P+L  G +S R+                 S    + NELIWREF+  ++  +P
Sbjct: 227 NGTSKIGPHLRFGTVSIRKIVKHAI----------NSDNKVFWNELIWREFFMQILWHFP 276

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +  +   F P  ++IEW  +    + WK G TG+P++DA MR+LN  G+MHNR+RM+TAS
Sbjct: 277 N-TVNNAFRPKYDRIEWRNNEAEFEKWKTGQTGYPLVDAGMRELNATGFMHNRVRMLTAS 335

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+DWR GE YF  +LLD DL++N G WQWAA +G D+ PYFRIFNP+ Q  +FD
Sbjct: 336 FLCKHLLIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPSTQIDKFD 395

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            Q T++  W+PEL                      NYP  IVDHK A    L  Y  A
Sbjct: 396 KQKTYVNQWVPELQEF-------------------NYPTQIVDHKFARERCLKVYKEA 434


>gi|256959014|ref|ZP_05563185.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5]
 gi|257079045|ref|ZP_05573406.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1]
 gi|294781685|ref|ZP_06747020.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1]
 gi|307270984|ref|ZP_07552267.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248]
 gi|307289140|ref|ZP_07569096.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109]
 gi|256949510|gb|EEU66142.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5]
 gi|256987075|gb|EEU74377.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1]
 gi|294451237|gb|EFG19704.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1]
 gi|306499849|gb|EFM69210.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109]
 gi|306512482|gb|EFM81131.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248]
 gi|315037012|gb|EFT48944.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0027]
 gi|315164049|gb|EFU08066.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1302]
 gi|329571665|gb|EGG53346.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
           TX1467]
          Length = 477

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 243/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|209884870|ref|YP_002288727.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
 gi|209873066|gb|ACI92862.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
          Length = 487

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/487 (31%), Positives = 223/487 (45%), Gaps = 21/487 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQHGISARQSHFIYA 63
           + S  +VW RNDLR++D+ A  AA   + A +I +FI      Q  +  + A    ++  
Sbjct: 7   SASSVIVWFRNDLRLSDHAA-LAAAAGTGAPLICLFILDEAAAQSARRPLGAAAKWWLAN 65

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY-NRQYEINEVRRDKL 122
           SL  + + L ++G      +     D+   L     + +   +F+ + +         ++
Sbjct: 66  SLRTLDRELRKRGQRLILRRG----DTATILVQIAQEAKAKAVFWLDSEIPAEAACARQV 121

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +    +  V        +L  P  I N      +V+TPF K +                 
Sbjct: 122 ITALHEIGVETHISRSDLLASPSMIRNKEGHGLRVFTPFWKRVRALGDPPPPLPAMKKLP 181

Query: 183 RLTGPVTPSNIPRFFDYPF-----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                V   +I  +   P        +   +  GE  A   L  F  + +  Y   RD  
Sbjct: 182 PSVASVESESIEDWQLEPLHPDWAGGLRARWKPGEAGARKKLDAFLDDAIDGYASGRDDL 241

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A   TS LS +L  G +SPRQ ++  +                +L+EL WREF RHL+  
Sbjct: 242 ARDQTSHLSAHLRFGEISPRQVFHATRFAAAH-NPALSHDVEKFLSELGWREFCRHLLFD 300

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +   +   P  +   W  D   L AW+QG TG+PI+DA MR+L   G MHNR+RM+ 
Sbjct: 301 QPDL-HRQDLQPSFDNFPWRTDRAALSAWQQGRTGYPIVDAGMRELWHTGTMHNRVRMVA 359

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVK LL+DWR GE +F   L+D D  SN G WQW A  G D+ PYFRIFNP +QG++
Sbjct: 360 ASFLVKHLLIDWREGERWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRIFNPVLQGEK 419

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKACHHTL 471
           FDP G ++  W+PEL  +P + IH P       L    ++L   YP PIVDHK A    L
Sbjct: 420 FDPDGAYVMKWVPELAKLPPKLIHQPWEATPMELAAAGITLGKTYPAPIVDHKAARERAL 479

Query: 472 NQYYAAK 478
             Y   +
Sbjct: 480 AAYRKMR 486


>gi|116617921|ref|YP_818292.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096768|gb|ABJ61919.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 470

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 176/481 (36%), Positives = 245/481 (50%), Gaps = 26/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V ++W R DLR+ DN AL+ A  +S+ +++ VF   PEQ  +      QS F +AS+L  
Sbjct: 2   VSVMWFRRDLRLEDNIALFNALRHSN-EILCVFHINPEQVTEKST-VNQSAF-FASVLYF 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L ++GI          D                 +F+N         RD+      +
Sbjct: 59  KNKLKKQGINLNIMYGDINDCFASLKQKLP---DWHDIFFNFDERGFGRNRDQKSVAFFE 115

Query: 129 HRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL---PVPAIR 183
            ++  K+    D  L     +   +   YKV+TP+ K  I+    A +  +    + + R
Sbjct: 116 DKLKVKAHPYIDYNLHGATEVKKDSGAGYKVFTPYFKRWIRQEKPAPVSYVIDKRIKSAR 175

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           L  P     +  F D  F  I      G + A  +L +F  E +  Y E+RD PA   TS
Sbjct: 176 LLFPENEQLLETFIDDRFSFIKKDL--GSETAKKVLNRFINESLDQYDEERDFPANDSTS 233

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS YL  G +S R  W  + +           G  +++ EL WR+FY  +   YP+  +
Sbjct: 234 HLSRYLRTGEISIRTVWRAIDQ------SPDSDGKSTFMKELCWRDFYNMIYVMYPNQNV 287

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +        ++W  +    +AW+ G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL K
Sbjct: 288 -ESVNKDFRHVDWINNEQQFEAWRTGQTGFPIVDAAMRQLNATGWMHNRLRMIVASFLTK 346

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YF ++LLD D ASN GGWQWAASTG DSVPYFRIFNPT+Q K+FD  G 
Sbjct: 347 DLLIDWRWGEAYFHNKLLDYDAASNIGGWQWAASTGTDSVPYFRIFNPTLQSKKFDSNGL 406

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI+ ++PEL NV  + IH P    +         +  NYP PIVDH  A    ++ Y ++
Sbjct: 407 FIKKYVPELKNVDNKMIHEPGKLSESEQTRFNVRIGQNYPFPIVDHSYARKRAISIYESS 466

Query: 478 K 478
           K
Sbjct: 467 K 467


>gi|300860779|ref|ZP_07106866.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
           TUSoD Ef11]
 gi|300849818|gb|EFK77568.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
           TUSoD Ef11]
 gi|315145075|gb|EFT89091.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2141]
 gi|315160408|gb|EFU04425.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0645]
          Length = 477

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 243/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|161138118|gb|ABX58030.1| cryptochrome 2 [Triticum aestivum]
          Length = 650

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/492 (25%), Positives = 219/492 (44%), Gaps = 31/492 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN     A    D  V+ VFI  P +  +         ++  SL  + 
Sbjct: 7   TVVWFRRDLRIDDNP--ALAAAARDGAVLPVFIWCPAEEGRFYTGRCSRWWLKESLAHLA 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE-KRLQ 128
           +SL   G      +      ++  L         T++ YN  Y+   + RD  ++ + L 
Sbjct: 65  RSLQALGCPLVLIRAQT---TLAALLQCVDSIGATRVVYNHLYDPISLVRDDKIKNELLG 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  + +     +  +  + +  ++  +       P   + ++G +
Sbjct: 122 LGISMQSFNGDLLYEPWEVYDENGLAFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSG-I 180

Query: 189 TPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                    +   ++          +   +  G +NA   L  F    +  Y + R   A
Sbjct: 181 ENICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVA 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSPYL  G +S R+ +  ++ + +    + KSGA      +L  +  RE+ R+L
Sbjct: 241 GTTTSLLSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESVNLFLLSIGLREYSRYL 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R
Sbjct: 301 CFNFP-FTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK L + W  G +YF   LLD D+ S+  GWQ+ + +  D     R+ NP +Q
Sbjct: 360 VIVSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQ 419

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468
           G+++DP G ++R W+PEL  +P ++IH P             +L  NYP+PIV+   A  
Sbjct: 420 GQKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARE 479

Query: 469 ---HTLNQYYAA 477
                ++  +  
Sbjct: 480 CLDDAISTMWQL 491


>gi|292490401|ref|YP_003525840.1| deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4]
 gi|291578996|gb|ADE13453.1| Deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4]
          Length = 477

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/451 (33%), Positives = 228/451 (50%), Gaps = 13/451 (2%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A    LVW R DLR+ DN A  AA      +VI V+I  PE+       A    + + SL
Sbjct: 2   AQPTALVWFRRDLRLGDNPA-LAAACALGGQVIPVYIDAPEEEGAWPPGAASRWWQHHSL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +   L ++       Q  +     + L     +   T +F+NR+YE   ++RD+ +++
Sbjct: 61  AALDSGLKKRNSRLIVRQGPSH----KALGQLAEETSATHIFWNRRYEPAVIKRDQAIKQ 116

Query: 126 RLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +L+      KS +  +L  P  I  +    Y+++TPF K  ++  +       P     +
Sbjct: 117 QLRAAGLTVKSTNALLLFEPWEIAKNDGMPYRIFTPFWKTCLEKGIGRSPFPPPQHLPPV 176

Query: 185 TGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
              +    +      P    D      +  GE  A      F +E +  Y ++RD P + 
Sbjct: 177 NRQLQSEPLSTLGLLPKIPWDQEFYTHWTPGEAGAWRQWECFLEEALGKYHQERDRPDLP 236

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS+LSP+L  G +SPRQ   ++ +  +D   +  +G  ++L +L WREF  HL+  +P 
Sbjct: 237 GTSRLSPHLHFGEISPRQIAFQI-QIQMDRRAELTAGGQAYLRQLGWREFAYHLLYHFPE 295

Query: 301 VCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               KP         W +D    L AW+QG TG P++DA MR+L   GWMHNR+RMI AS
Sbjct: 296 TPE-KPLNEGFTHFPWAEDYGEALTAWQQGRTGIPLVDAGMRELWRTGWMHNRVRMIAAS 354

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
            L K+L + W+ GE +F   L+D DLASN  GWQW A  G D+ PYFR+FNP +QGK+FD
Sbjct: 355 LLTKNLRIPWQEGERWFWETLVDADLASNTLGWQWVAGCGADAAPYFRVFNPVLQGKKFD 414

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
           P+G +++ W+PEL  +  Q+IH P     + 
Sbjct: 415 PEGKYVQQWIPELRKISKQHIHEPWKEARQP 445


>gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis]
 gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis]
          Length = 616

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 130/501 (25%), Positives = 204/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       + ++TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + D   +PV  I  
Sbjct: 116 LASEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVETITA 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T PV+  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVMEKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R           T+ LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P         P   +I W+++   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMDG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   GKR DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|257419331|ref|ZP_05596325.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11]
 gi|257161159|gb|EEU91119.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11]
          Length = 477

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSRYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|254424429|ref|ZP_05038147.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
 gi|196191918|gb|EDX86882.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
          Length = 490

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 138/491 (28%), Positives = 235/491 (47%), Gaps = 30/491 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+WLRNDLR+ D++ L+ A     A +I V+   P Q++          + ++ F+  ++
Sbjct: 4   LLWLRNDLRLHDHEPLHRATEQG-ADIIPVYCFDPRQFQATSFGFPKTGSYRAQFLIETV 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++  L  +G      Q        E + +      +  ++++ +    E+  ++ LE 
Sbjct: 63  AALKAELRSRGSNLVILQGKPE----EEIPALVKAFDIAAVYWHEEVTPEEIEVEQRLET 118

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L   +V  + +  + L  P  +     Q+ +V+T FRKA+ +N         P     L
Sbjct: 119 VLNQLKVTSEVYWGATLYHPDDLPFEVSQLPEVFTQFRKAIEKNTQVFPTFPTPEKLPSL 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCK--EKVYYYVEQRD- 235
              + P  +P   D   +           F  GE   L  L+ +    +++  Y E R+ 
Sbjct: 179 PNEIEPGELPSLSDLGLERTPIDEKGVLPFKGGESKGLDRLQHYFWNADRLQRYKETRNG 238

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ SP+L+ G LSPR+ +  ++    +   K  +  +  + EL+WR+++R + 
Sbjct: 239 MLGADYSSKFSPWLANGSLSPRRVYEEVQRYERER--KKNNSTYWMIFELMWRDYFRFVC 296

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             Y      K  I     IEW +D      W++G TG+P+IDA MR+L   G+M NR R 
Sbjct: 297 VKYGRKIFRKGGIRGL-PIEWQQDWKRFDLWREGKTGYPLIDANMRELAATGFMSNRGRQ 355

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL K+L +DWR+G E+F S L+D D+ SN G W + A  GND+   FR FN   Q 
Sbjct: 356 NVASFLTKNLGIDWRMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQS 414

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K +D +G +++HWLPEL  +P + +H P +            L ++YP P+VD +K+   
Sbjct: 415 KDYDSEGKYVKHWLPELKTLPAKKVHTPWTLQTVEQKQFNVRLGVDYPNPVVDLQKSVSV 474

Query: 470 TLNQYYAAKKQ 480
              +Y  A +Q
Sbjct: 475 NERRYEDAWQQ 485


>gi|256965091|ref|ZP_05569262.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704]
 gi|307273190|ref|ZP_07554436.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855]
 gi|256955587|gb|EEU72219.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704]
 gi|306510175|gb|EFM79199.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855]
          Length = 477

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 243/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|239835007|ref|ZP_04683335.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
           3301]
 gi|239823070|gb|EEQ94639.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
           3301]
          Length = 461

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/465 (33%), Positives = 242/465 (52%), Gaps = 15/465 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVWLRNDLR+ DN AL+AA     A + A+F+      +     A    ++  SL  + 
Sbjct: 5   ALVWLRNDLRLADNPALHAAFKLGGA-ITALFVHESN-PQLRDPGAAVRWWLEQSLDLLA 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL+++ I           +++  ++    +     +F+NR+Y   E   D +++  L+ 
Sbjct: 63  RSLNERNIELIVADG----EALNTIEQLIEENNFDTVFWNRRYAPQEREVDAVIKSGLKD 118

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + +  +SF  ++L+ P  I +     Y+V+TP+ K+L Q+ V   L          T   
Sbjct: 119 KGLRVESFAGNLLVEPWEIKSGNGGSYQVFTPYAKSLRQHGVSRPLPLPDRSVETTTVKH 178

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           TP           + +  ++ IGE  A+  L  F    +  Y   RD P + GTS+LS +
Sbjct: 179 TPKQKNYKEAVWSRKMSGLWMIGEAAAIDQLYHFFDTTIRDYAGDRDRPDLDGTSKLSAH 238

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G +SPRQ W+       D       G   +L+ELIWR+F+ H + + P +       
Sbjct: 239 LRFGEISPRQVWHATVSLM-DQDHSTVPGGQKFLSELIWRDFHYHQLYYRPDIAE-IDMR 296

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                  W  +S  + +W++G TG PIIDA MRQL   GWMHNR+RM+ AS L K++ +D
Sbjct: 297 DTLANTRWQSNSVGINSWRRGKTGIPIIDAGMRQLWATGWMHNRVRMLVASALCKNMQID 356

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE++F   L+D D+ASN G WQW A  G D+ PYFR+FNP +QG++FD +G ++R W
Sbjct: 357 WREGEKWFWDTLVDADVASNPGNWQWVAGCGMDAAPYFRVFNPVLQGEKFDTKGVYVRKW 416

Query: 429 LPELNNVPTQYIH----APHSWLDKND--LSLNYPLPIVDHKKAC 467
           +PE+  +P  +IH    AP + L +    L   YPLPI    KAC
Sbjct: 417 VPEIAALPDCWIHKPFAAPPAVLREAGVVLGQTYPLPIFTPSKAC 461


>gi|73969272|ref|XP_531757.2| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 1
           [Canis familiaris]
          Length = 606

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|225011846|ref|ZP_03702284.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-2A]
 gi|225004349|gb|EEG42321.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-2A]
          Length = 434

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 141/472 (29%), Positives = 210/472 (44%), Gaps = 46/472 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V L W R DLRI DN  LY A    + +VI +FI   E  ++      +   I  +L  
Sbjct: 3   KVTLFWFRRDLRIQDNCGLYHALK-GENRVIPIFIFDKEILKKLPKQDARVEMILLALGA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  ++ +     + +                 Q  + K+  N  YE     RD  ++  L
Sbjct: 62  IDIAMKRN----RCNVGKYHGTPKAIFSKLIKQWNIEKVICNEDYEPYASERDSEIKTLL 117

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRLT 185
           +   I  + + D V+     ++      YKVYTP+ +  ++   +  L+  P    +   
Sbjct: 118 EAAGIQFECYKDQVIFEKEEVVKGDGTPYKVYTPYSRKWLEKYQETPLQFYPSEVELDSL 177

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       D  F+      P           +F    +  Y   R+ PA+  TS+L
Sbjct: 178 ASNESLPDLNLSDLGFETSGIAQPE---------YRFDDTLIDQYEATRNFPALDQTSRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
             +L  G +S R+  N+                 ++L ELIWREF+  ++  +P     K
Sbjct: 229 GAHLRFGTVSIRRLVNQA----------SSRSNNTFLKELIWREFFMQILWHFP-YTQQK 277

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P  E+I W  +    + W  G TG+P++DA MR+LN  G+MHNR+RM+  SFL K L
Sbjct: 278 SFKPQYERIIWRNNPDEFEKWCAGETGYPLVDAGMRELNETGFMHNRVRMLVGSFLCKHL 337

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +LLD +++SN G WQW A  G D+ PYFRIFNP+ Q K+FD Q  +I
Sbjct: 338 LIDWRWGESYFAEKLLDYEMSSNVGNWQWVAGCGVDAAPYFRIFNPSEQIKKFDKQLQYI 397

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + W+P    +                   +YP PIVDHK A    L  Y  A
Sbjct: 398 QKWVPNFQEL-------------------DYPSPIVDHKYARERCLTTYKEA 430


>gi|257388583|ref|YP_003178356.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
           12286]
 gi|257170890|gb|ACV48649.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
           12286]
          Length = 466

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/478 (31%), Positives = 227/478 (47%), Gaps = 17/478 (3%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + + W R DLR TDN  L AA   +D+ V+ VF+           +  +  F+  +L  +
Sbjct: 1   MRIHWHRRDLRTTDNAGLAAA--TADSPVVPVFVFDDAVLD--HAAPPRVAFMLDALDSL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +     +G            D    +           + +   Y    + RD  + + L 
Sbjct: 57  RAQYRDRGSDLVIAHG----DPTAEIPRLAEAFGADGVTWGEAYSGLGIERDIAVRQALD 112

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              + +    DSV   PG I  +    Y V+T F +       +        P       
Sbjct: 113 DVGVEREAVTDSVHHRPGEITTNDGDPYSVFTYFGRKWHDREKEDP---YDAPGPDELAD 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           V+   +P   D  F+      P  G + A  +L  FC++ +Y Y ++RD PA   TS+LS
Sbjct: 170 VSGDPLPSVGDLGFEEPQAEIPPAGTEPARELLDAFCEDDIYRYEDRRDYPADDCTSRLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCMGK 305
            +L  G +  R+ + R          + +      + ++L WREFY  ++    SV    
Sbjct: 230 AHLKFGTIGIREVYERTASAAAAADDEERRESVAEFQSQLAWREFYTQVLFANRSVVTDN 289

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +  +   ++W  D   LQAWK G TG+PI+DA MRQL    ++HNR+RMI ASFL KDL
Sbjct: 290 -YKTYERPLQWRDDPEALQAWKDGETGYPIVDAGMRQLRQEAFVHNRVRMIVASFLTKDL 348

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR G E+F  +L+D D A++NGGWQWAASTG D+ PYFRIFNP  QG+R+DP   +I
Sbjct: 349 LIDWRAGYEWFKERLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYI 408

Query: 426 RHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           + ++PEL +     IH     S   + + +  YP PIVDH +     L  +  A+ +S
Sbjct: 409 KTYVPELRDAEPSVIHEWPDLSLTQRRNAAPEYPDPIVDHSERRDQALEMFETARGES 466


>gi|149372178|ref|ZP_01891448.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
           SCB49]
 gi|149354945|gb|EDM43507.1| deoxyribodipyrimidine photolyase-class I [unidentified eubacterium
           SCB49]
          Length = 435

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/473 (30%), Positives = 219/473 (46%), Gaps = 47/473 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V++ W R DLR+ DN   + A H     V+ +FI   E   +      +  FI+ +L +
Sbjct: 4   KVNVFWFRRDLRLDDNLGFFKALH-GKYPVLPIFIFDSEILNELPKDDARVTFIFNTLQK 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ +L +KG     +Q    D   + +  + +Q  +T    N  YE+    RD+ ++  L
Sbjct: 63  MRDALQEKGSSLAMYQGKPLDIYKQLIKDFDVQNVIT----NHDYEVYAQDRDEEIKTFL 118

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + +   +F D V+     ++      Y VYTP++        +     +   +  L  
Sbjct: 119 AQKDIDFYTFKDQVIFEKNEVVKDNGDPYVVYTPYKNKWKAAFNEDKHLKIHYTSQHLDA 178

Query: 187 PVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            +  S +P     D  F       P                 +  Y   R+ PA+ GTS 
Sbjct: 179 LIEHSRLPNLSLSDIGFTKSSIEVPS---------YDVRPTLIQEYENTRNFPAVDGTSH 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           L P+L  G +S R+   +   E  +          +++NELIWREF+  ++  +P     
Sbjct: 230 LGPHLRFGTVSVRKMMRKAISEKNE----------TFMNELIWREFFMQILWHFPK-TQH 278

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F    ++I W  +    + WK+G TG+ ++DA MR+LN  G+MHNR+RM+ ASFL K 
Sbjct: 279 NAFRSKYDRITWRNNEEEFEKWKKGETGYLLVDAGMRELNKTGYMHNRVRMLVASFLCKH 338

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +LLD + +SN G WQWAA +G D+ PYFRIFNP  Q  +FD   T+
Sbjct: 339 LLIDWRWGEAYFAEKLLDYEQSSNVGNWQWAAGSGVDAAPYFRIFNPITQVDKFDKDKTY 398

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR W+PE                     +  YP  +VDHK+A    L  Y  A
Sbjct: 399 IRKWIPEFE-------------------TDKYPNKMVDHKEARERCLKVYKEA 432


>gi|73969274|ref|XP_862802.1| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 3
           [Canis familiaris]
          Length = 613

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|257422581|ref|ZP_05599571.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98]
 gi|257164405|gb|EEU94365.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98]
 gi|315155723|gb|EFT99739.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0043]
          Length = 477

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|86134119|ref|ZP_01052701.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
           MED152]
 gi|85820982|gb|EAQ42129.1| deoxyribodipyrimidine photo-lyase, class I [Polaribacter sp.
           MED152]
          Length = 434

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 147/474 (31%), Positives = 219/474 (46%), Gaps = 49/474 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V + W R DLR+ DN   Y A   S+ KV+ +FI   E   +      +  FIY +L +
Sbjct: 4   TVTVFWFRRDLRLDDNIGFYNALK-SEHKVLPIFIFDKEILSKLPKDDARVTFIYDTLQE 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  L            + F  + E           +  +F NR YE    +RD+ +E+ 
Sbjct: 63  MRGELQDN----YGSSIAMFHGNPESVFSELIKNYTIDAVFTNRDYEPYATKRDESIEQL 118

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    +  K+F D V+     ++      YKVYTP+ K   +   + DL+      + L 
Sbjct: 119 LSENDIEFKTFKDQVIFEKDEVVKKDGDPYKVYTPYMKLWKEQFKKEDLKIYYTNDV-LD 177

Query: 186 GPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             +  S +P     D  F   +                     +  Y + R+ PA   TS
Sbjct: 178 NLIQNSRLPNLSLSDIGFTKSNQEITP---------YTVTPTLIKEYEDTRNFPAQDATS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            L P+L  G +S R+   +   E  ++          +  ELIWREF+  ++  +P    
Sbjct: 229 HLGPHLRFGTVSVRKMVKKAMAESNEV----------FWQELIWREFFMQILWHFPH-TK 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F    ++IEW  +    +AW +G TG+P++DA MRQLN  G+MHNR+RM+  SFL K
Sbjct: 278 DEAFKSKYDRIEWRNNEREFKAWCKGETGYPLVDAGMRQLNETGFMHNRIRMLVGSFLCK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF  +L D ++ASN G WQW A +G D+ PYFRIFNPT Q K+FD    
Sbjct: 338 HLLIDWRWGEAYFAEKLHDYEMASNVGNWQWVAGSGVDASPYFRIFNPTTQIKKFDKDLK 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ W+                   K+    +YP  I+DHK A    L  Y AA
Sbjct: 398 YIKKWV-------------------KDYEKSSYPKEIIDHKSARERCLTVYKAA 432


>gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis]
          Length = 616

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 130/501 (25%), Positives = 204/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       + ++TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + D   +PV  I  
Sbjct: 116 LASEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVETITA 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T PV+  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVMEKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R           T+ LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P         P   +I W+++   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPCFDKMDG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   GKR DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGKRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKAAKCIIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|161521234|ref|YP_001584661.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
           17616]
 gi|189352592|ref|YP_001948219.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
           17616]
 gi|160345284|gb|ABX18369.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
           17616]
 gi|189336614|dbj|BAG45683.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
           17616]
          Length = 476

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/466 (33%), Positives = 229/466 (49%), Gaps = 20/466 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V  R DLR++D+ AL AAC   DA V+ V++ TP++       A    +++ SL 
Sbjct: 1   MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHTPDEDAIWSPGAASRWWLHHSLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L ++G      Q     D    + +         +++ R+YE   + RD  L+  
Sbjct: 60  SLDRALREQGGRLLAMQS----DPTIAVPALARAVDAQGVYWTRRYEPAAIARDAALKST 115

Query: 127 LQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ + I   S+  ++   P ++   A Q Y+V+TPF + L  +L        P+PA R  
Sbjct: 116 LRAQGIAAHSYPGALWQEPWTLATDAGQPYRVFTPFWRKLRTSLSDCH----PLPAARPR 171

Query: 186 GPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             +T  +                  +   +  GE  A   L +F  E +  Y + RD PA
Sbjct: 172 RWMTTDDSTAVEALGLLPRIRWDAGLADAWRPGEGGAWERLEQFVDEALAEYGDARDAPA 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             GTS+LS +L  G ++P Q    L+E         +     +L EL WREF  HL+  +
Sbjct: 232 RLGTSRLSAHLHYGEITPTQILRTLQERVARTSGSVRPDLEPFLRELGWREFAHHLLYHF 291

Query: 299 PSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           P       F    +   W   D   L  W+QG TG P++DA MRQL   GWMHNR+RM+ 
Sbjct: 292 PHTTDAN-FDARFDAFAWAPDDGEQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVV 350

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K+L   WR G  +F   L+D DLA+N  GWQW A  G D+ PYFR+FNP +Q  +
Sbjct: 351 ASFLTKNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAK 410

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           FDP   +++ WLPEL+ +P   +H P         +  YP P+VD 
Sbjct: 411 FDPDAAYLKRWLPELSRLPADVLHRPWKH-SAALAACGYPTPMVDL 455


>gi|298675064|ref|YP_003726814.1| deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
           Z-7303]
 gi|298288052|gb|ADI74018.1| Deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
           Z-7303]
          Length = 459

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/474 (31%), Positives = 232/474 (48%), Gaps = 24/474 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-QWRQHGISARQSHFIYASLLQV 68
            +   R DLR+ DN  L  A  NS+  VI  FI  P    +    +     F+  SL  +
Sbjct: 7   SIFIFRRDLRVDDNTGLDYALENSEY-VIPCFIFDPRLIEKNDNFNPNSFQFLIESLEDL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L+ KG             +   + +   +  +  +F NR Y     +RD+  +K  +
Sbjct: 66  KHQLNDKGAKLYLFHG----IAENVVTNLINKNLIDAVFVNRDYTPFSKKRDEAFKKACE 121

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + V   S +D +L  P  I       Y V+TPF K   +  V  +L  +       TG 
Sbjct: 122 MYNVDFISCNDLLLNNPDKIKTQKGTPYTVFTPFFKKASKFDV--NLPEMSSKQNFYTGK 179

Query: 188 VTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           +             +   P++   G  NAL IL     ++   Y  +RD P +  T+ LS
Sbjct: 180 IENELNDTDHFLKAKRNKPLYVKGGRSNALKILENL--DEFKNYENERDYPFLDATTGLS 237

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +   G +S R+ +  + ++           +   + +L WR+FY +L   YP +   + 
Sbjct: 238 AHNKFGTISIREFYYTVIDKL--------GISHPLITQLYWRDFYTYLAHHYPYI-FKQS 288

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    + IEW+ DS   + W  G TGFPI+DA +R++N  G+MHNR+RMITASFLVKDL 
Sbjct: 289 FKKKFDSIEWDNDSDKFKKWCAGETGFPIVDAGIREMNYTGYMHNRVRMITASFLVKDLH 348

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW+ GE+YF  +L+D D + N G WQW+ASTG D+ P+FRIFNP  Q K+FD +  +I+
Sbjct: 349 IDWKWGEQYFARKLVDYDKSVNIGNWQWSASTGPDAQPFFRIFNPWSQQKKFDSECIYIK 408

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+ EL NV  + IH   +  +KN     YP PI++HK     +L  +  A ++
Sbjct: 409 KWIEELRNVSCKSIH---NLENKNTFIPGYPEPIINHKTEREKSLAVFRLANQK 459


>gi|227344531|gb|ACP27856.1| blue light photoreceptor [Fragaria vesca]
 gi|270303922|gb|ACZ71184.1| blue light photoreceptor [Fragaria vesca]
          Length = 645

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/509 (26%), Positives = 222/509 (43%), Gaps = 39/509 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++      +VW R DLRI DN     A    D  V  V+I  P+             +
Sbjct: 1   MGSSNK---TIVWFRRDLRIEDNP--ALAAAARDGAVFPVYIWCPKDEGHFYPGRVSRWW 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  + +SL   G      +    D ++  L         TK+ +N  Y+   + RD
Sbjct: 56  LKQSLAHLDQSLKSLGAQLALIKT---DSTVSALLDCIQAIGATKVVFNHLYDPVSLVRD 112

Query: 121 KLLE-KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++ K ++  +  +S++  +L  P  + +   Q +  +  +    +    +      P 
Sbjct: 113 HNIKGKLVELGISVQSYNADLLHEPWEVYDAKGQTFTTFKEYWDKCLNMERELVTFLPPW 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYY 230
             ++ TG V         +   +          +   +  G   A   L +F    +  Y
Sbjct: 173 KLLQATGMVAK---YSLEELGLENETEKSSNALLGRAWTPGWSQADKALTEFFDVHLLDY 229

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELI 286
            + R       TS LSPYL  G +S R+ +   + +      +     +     +L  + 
Sbjct: 230 AKNRTKLGGNSTSLLSPYLHFGEVSVRKVFQLARMKQILFAKEGNSLGEESVTLFLRAIG 289

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            REF R++   +P     K  +       W  D    +AW+QG TG+P++DA MR+L   
Sbjct: 290 LREFSRYICFNFP-FTHEKLLLSNLRFFPWKADQGRFKAWRQGRTGYPLVDAGMRELWAT 348

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GW+HNR+R+I +SF VK LL+ W+ G +YF   L+D DL S+  GWQ+ + +  D     
Sbjct: 349 GWIHNRIRVIVSSFAVKVLLLPWKWGMKYFWDTLMDADLESDILGWQYISGSLPDGHELE 408

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPI 460
           R+ +P +QG +FDP G ++RHWLPEL  +PT++IH P    D        +L +NYP PI
Sbjct: 409 RLDSPEVQGSKFDPDGEYVRHWLPELARLPTEWIHHPWDTPDNVLKVSGVELGVNYPRPI 468

Query: 461 VDHKKACHH---TLNQYY----AAKKQSL 482
           ++   A       + + +    AAK  +L
Sbjct: 469 IEIDLARERLTEAIFKMWEIEAAAKAANL 497


>gi|206560613|ref|YP_002231378.1| putative DNA photolyase [Burkholderia cenocepacia J2315]
 gi|198036655|emb|CAR52553.1| putative DNA photolyase [Burkholderia cenocepacia J2315]
          Length = 494

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/479 (30%), Positives = 236/479 (49%), Gaps = 23/479 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A ++++  +VW R+DLR+TD  AL  A   S   ++ VF+          +      ++
Sbjct: 4   PAQSSVAPAIVWFRDDLRVTDQPALTLAVE-SGRPLVCVFVDDTGAGAGPALGGAARWWL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  +L++ G      +     D+   ++          +++NR+Y   +   D 
Sbjct: 63  HGSLAGLDAALARHGGRLLLLRG----DAQREIERLVRDTGAAAVYWNRRYAQPQRDADA 118

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L+  L+ R +  +S + S+L  P  +L  +   Y+V+T + +A  ++   A     P  
Sbjct: 119 ALKTSLKARGVAVESSNGSLLNEPWEVLTGSGGPYQVFTAYWRAARRDRAVAAPLPAPGQ 178

Query: 181 AIRLTGP----------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
            +  + P             +  P   D+     D      E  A   L  F    +  Y
Sbjct: 179 IVFHSWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSLAGY 238

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD P    TS+LSP+L  G +SPRQ W+ ++           + A  +L+EL WREF
Sbjct: 239 ADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADADKFLSELGWREF 298

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P++     F    + + W  D   L+AW++G TG+P++DA +R+L T GWMH
Sbjct: 299 SYTLLYHFPTLATDN-FRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMH 357

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFL+K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFN
Sbjct: 358 NRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFN 417

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           P  QG++FDP G ++R W+PEL  +    IHAP              L ++YP P+V+H
Sbjct: 418 PVAQGQKFDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGIRLGIDYPAPLVEH 476


>gi|194365340|ref|YP_002027950.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia
           R551-3]
 gi|194348144|gb|ACF51267.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia
           R551-3]
          Length = 471

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 228/476 (47%), Gaps = 15/476 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV LVW R DLR+ DN AL AA  ++   V+ V+I  P +  +    A    + + SL 
Sbjct: 1   MSVALVWFRRDLRLQDNPALQAAL-DAGHDVVPVYIHAPHEEGEWVPGAASDAWRHRSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G            DS+  L +   Q     +F+NR+YE     RD  +++ 
Sbjct: 60  ALDAYLRSRGSSLVLRSG----DSLATLQALIKQTGAEAVFWNRKYEPATQPRDATIKRT 115

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIRL 184
           L+ + I  +S + S+L  P  I     Q YKV+TP+ + ++ +     L++ P       
Sbjct: 116 LREQGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPKALTAHS 175

Query: 185 TGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              +    +       +       +  GE  AL  L  F    +  Y EQRD+P   GTS
Sbjct: 176 VDSLGLEELRLAPTLDWDIGFWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTS 235

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++SP+L  G ++P +  + L+            G   +L +L WR+F  HL+  +P    
Sbjct: 236 RMSPHLHFGEIAPWRIAHALEGLRSAGTDADIDG---YLRQLGWRDFAYHLLHHFPKTPT 292

Query: 304 GKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            +   P  ++  W    +  L  W++G TG PI+DA +R+L   G+MHNR+RMI AS+L 
Sbjct: 293 -ENLNPRFDRFPWATPSAAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYLC 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L   W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDPQ 
Sbjct: 352 KHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 411

Query: 423 TFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPL-PIVDHKKACHHTLNQYYA 476
            +I  W+PEL  +P +   AP    L     +  YP  P+VD        L  Y  
Sbjct: 412 RYISRWVPELAALPVKARFAPWQHPLLLAAHAPGYPRTPLVDLAVGRDAALAAYRQ 467


>gi|207744141|ref|YP_002260533.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
           solanacearum IPO1609]
 gi|206595545|emb|CAQ62472.1| putative deoxyribodipyrimidine photolyase, class 1 protein
           [Ralstonia solanacearum IPO1609]
          Length = 522

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 170/490 (34%), Positives = 242/490 (49%), Gaps = 31/490 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR---QHGI-SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V   F+           HG+ + R+  FI A++
Sbjct: 27  GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLAHGLRADRRVEFIRAAV 85

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ +L + G           D +   + S   Q  V  +F N   E   + RD  +  
Sbjct: 86  EALRGALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 141

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L  +      F D V+     +LN   + Y V+TP++ A +  +   DLR+ P+     
Sbjct: 142 ALARQPCAWLDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 201

Query: 185 TGPVTPSNI----PRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                P  +    P      F   +      P G   A  +L  F   ++  Y  +RD P
Sbjct: 202 ALARPPQGLAPATPSLEAMGFARSNLSAIALPTGMSGAEALLDDF-ATRMDDYHARRDYP 260

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S R     L       ++    GA +WL+ELIWR+FY  ++  
Sbjct: 261 AVRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYFMILHH 316

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P +  G  F P  ++I W           AW+   TG+P++DAAM Q+   G+MHNRLR
Sbjct: 317 RPDLAGGASFRPEFDRIRWVDGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLR 376

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL+KDL VDWR GE YF   L D D A+NNGGWQWAAS+G D+ P+FRIFNP  Q
Sbjct: 377 MVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQ 436

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468
            ++FDPQG FIR +LP+L  +P +Y+HAP +            L   YP PIV+H  A  
Sbjct: 437 SEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPRPIVEHAAARA 496

Query: 469 HTLNQYYAAK 478
            TL +Y  AK
Sbjct: 497 ATLERYAPAK 506


>gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
 gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           8102]
          Length = 477

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 164/480 (34%), Positives = 233/480 (48%), Gaps = 22/480 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFIYASLL 66
           L W R DLR+TDN  L AA   S A V  V++  P+          ++  +  F+  SL+
Sbjct: 7   LFWHRRDLRLTDNLGLAAAAAISPA-VTGVYVLDPQVISPSEHLLPMAPARLWFLIESLI 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++Q+     G      +     D ++ L     +     + +NR  E     RD+ + +R
Sbjct: 66  ELQQRWRDAGSRLLVVEG----DPVQLLPQLAERIAAEAVVWNRDVEPYARERDRQVAQR 121

Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA--IR 183
           LQ          D +L+ P  +       Y+VY PF +     +      ++P PA  + 
Sbjct: 122 LQADGRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVQAKQPVTVPAPAGLVD 181

Query: 184 LTGPVTPSN---IPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           L     PS    + R   + F+  +      GE  A+  L  FC   ++ Y   R+ P +
Sbjct: 182 LDPAAVPSGEPLMARRDSHGFKGTELCPCRPGEAAAMQQLTSFCDGALFGYEPDRNFPGV 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFY 298
            GTS LS  LS+G LSPRQ W+  +E       + +      W  EL WREFY+  +  +
Sbjct: 242 VGTSYLSAALSVGTLSPRQAWSAAQEAREQARSEEQLHAIAVWEQELCWREFYQQALFHF 301

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +  G P+     +  W  +      W++G TG PIIDAAMRQLN  GWMHNR RMI A
Sbjct: 302 PELSDG-PYREQWRRFPWENNEDWFDFWREGQTGMPIIDAAMRQLNQTGWMHNRCRMIVA 360

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q  +F
Sbjct: 361 SYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQASKF 419

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           D  G +IR W+PEL +V T+ +    S         +YP P+V+HK         Y   +
Sbjct: 420 DAAGDYIRQWVPELRHVNTKDL---LSGEIGALERRDYPEPLVNHKTQQAKFKALYATIR 476


>gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus]
 gi|81882230|sp|P97784|CRY1_MOUSE RecName: Full=Cryptochrome-1
 gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus]
 gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus]
 gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
 gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
 gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus]
 gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus]
          Length = 606

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/502 (25%), Positives = 200/502 (39%), Gaps = 40/502 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                 +      S  L     L+  +++     P      Q LV   +  L +PA  +T
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLVS-KMEPLEMPADTIT 171

Query: 186 GPVTPSNI-------------PRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYY 229
             V    +             P   +  F        ++P GE  AL  L +  + K + 
Sbjct: 172 SDVIGKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWV 231

Query: 230 YVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L
Sbjct: 232 ANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQL 290

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL  
Sbjct: 291 LWREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQ 408

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPL 458
           +F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP 
Sbjct: 409 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPK 468

Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480
           P+V+H +A    + +     +Q
Sbjct: 469 PMVNHAEASRLNIERMKQIYQQ 490


>gi|194290487|ref|YP_002006394.1| deoxyribodipyrimidine photolyase (photoreactivation), fad-binding
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224322|emb|CAQ70333.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Cupriavidus taiwanensis LMG 19424]
          Length = 519

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 179/491 (36%), Positives = 254/491 (51%), Gaps = 28/491 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR TD+ AL+ A  +  A+V  VF+   +           + R+  FI  SL
Sbjct: 23  GLVWFRRDLRATDHAALHYALRHC-AQVWCVFVFDRDILEPLLARGLQADRRIEFIRQSL 81

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +++  +L+  G           D +   + +         +F N  YE     RD+ + +
Sbjct: 82  VELAGTLAAAGGGLIVLH----DRAQTAIPALARALDAEAVFANHDYEPAANARDEAVRQ 137

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV----P 180
            L  +     +F D  +     ILN   + + V+TP++ A ++     DLR  PV    P
Sbjct: 138 ALAAQACALFTFKDQAIFERDEILNGQGKPFSVFTPYKNAWLRAAEPFDLRPYPVEPYLP 197

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           A+          +P      F+A +      P G   A  +  +F   ++  Y  +RD P
Sbjct: 198 ALAPVPAAYRLPVPTIAQLGFRASNLAEIAMPTGASGAQALFEEF-TGRMGDYGRRRDYP 256

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S R    R+  E +       +GA  WL+ELIWR+FY  ++  
Sbjct: 257 ALRGPSYLSVHLRFGTISIRTLA-RVAHEAMLRGGADSAGAAVWLSELIWRDFYFMILHH 315

Query: 298 YPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +P V  G  F P  + I W   +       AW+   TG+P+IDAAM Q+   G+MHNRLR
Sbjct: 316 HPRVAAGAAFHPAYDAIRWQDGDTGERYFHAWRDAATGYPLIDAAMLQIRQSGYMHNRLR 375

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+TASFLVKDL VDWR GE+YF  QL D DLA+NNGGWQWAASTG D+ P+FRIFNP  Q
Sbjct: 376 MVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQ 435

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468
            ++FDPQG FIR +LP+L  +P +Y+HAP +  +         L  NYP P+V H  A  
Sbjct: 436 SQKFDPQGRFIRKYLPQLAALPDKYLHAPWTAPEAVLAEAGVRLGDNYPRPLVQHDVARQ 495

Query: 469 HTLNQYYAAKK 479
            TL +Y A K+
Sbjct: 496 QTLRRYEAVKQ 506


>gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis]
          Length = 589

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/498 (24%), Positives = 198/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALREVIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +         L     I+        +     + LI  +   ++    + A  +
Sbjct: 116 LASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQ 233
           +   TP +      Y   +++ +           +P GE  AL  L +  + K +    +
Sbjct: 176 SKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  D      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPDGVQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQMYQQ 490


>gi|229549977|ref|ZP_04438702.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200]
 gi|312951532|ref|ZP_07770428.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102]
 gi|229304890|gb|EEN70886.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200]
 gi|310630498|gb|EFQ13781.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102]
 gi|315152445|gb|EFT96461.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0031]
 gi|315158111|gb|EFU02128.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0312]
 gi|327535168|gb|AEA94002.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1RF]
          Length = 477

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|189202516|ref|XP_001937594.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984693|gb|EDU50181.1| deoxyribodipyrimidine photo-lyase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 534

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 146/494 (29%), Positives = 236/494 (47%), Gaps = 35/494 (7%)

Query: 12  VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            W    DLRI DN AL+ A     ++   ++ +++  P     HG SA +  F+   L  
Sbjct: 50  HWFHPKDLRIQDNTALHHASELAQSAKKPLVCIYVDCPADESWHGTSAARVDFMCEGLKI 109

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK L    I   + QC +    +E    +  +Q+V+ +F N +YEI+E+RRD  L K +
Sbjct: 110 MQKELKDLNIPLVFLQCEDRKKIVETAVEWVKKQQVSHVFGNYEYEIDEMRRDLKLVKTV 169

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLPVPA 181
             ++    + D  ++ PG++L       K++TP+ KA +  L          L     P+
Sbjct: 170 GDKIQVSLYHDQTVVEPGTMLTGTGTPMKIFTPYHKAWLAKLRSEPELLDNNLPPAANPS 229

Query: 182 I---------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                         P   S+     D   + I  ++P G   A   +  F K+ + +Y  
Sbjct: 230 SMKKDLKDLFDTPAPKPASDKQFASDEEKKRIRKLWPAGHSAASARMDSFLKQ-ISHYAA 288

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD----LLIKPKSGAFSWLNELIWR 288
            R  PA   TS++S Y S G++S R    ++ +           K  +G + W+ E+++R
Sbjct: 289 TRSNPAANSTSRMSAYFSAGMISMRSTLQKVVDYNRGSTDFTEAKASTGVYGWVREIVFR 348

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E YR      P   M  P     + ++W  D    + W +G TG P IDA MRQLN   +
Sbjct: 349 ELYRQTTMTTPHTSMNLPQNLKFDAVQWEDDEEGWEKWYKGQTGEPFIDAGMRQLNAEAY 408

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM  +S+L  +LL+D+R GE YF   L+D DL++N  GW+          P + +
Sbjct: 409 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYTV 458

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKAC 467
           FNP  Q ++ DP G +IR W+PEL +V  + + AP++ L K +   L YP P VD K+  
Sbjct: 459 FNPVSQAEKNDPDGEYIRKWVPELKHVKGKAVFAPYARLSKEEFEKLGYPKPHVDWKETK 518

Query: 468 HHTLNQYYAAKKQS 481
              ++++    + +
Sbjct: 519 ARAIDRFKRGLRSA 532


>gi|29376159|ref|NP_815313.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583]
 gi|227518787|ref|ZP_03948836.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104]
 gi|29343622|gb|AAO81383.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583]
 gi|227073782|gb|EEI11745.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104]
 gi|315575832|gb|EFU88023.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
           TX0309B]
 gi|315580484|gb|EFU92675.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
           TX0309A]
          Length = 477

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VIWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|196231423|ref|ZP_03130282.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428]
 gi|196224759|gb|EDY19270.1| Deoxyribodipyrimidine photo-lyase [Chthoniobacter flavus Ellin428]
          Length = 468

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/477 (33%), Positives = 235/477 (49%), Gaps = 19/477 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  + W R DLRITDN AL AA    D +V+ V+I +  +       A +  F+   L 
Sbjct: 1   MSTAIHWFRRDLRITDNTALAAAAAAHD-QVVPVYIVSEWKAEHRWCGAPRQAFLCGCLD 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L  KG      Q      +   L     Q     +++NR  +      ++ L K 
Sbjct: 60  SLARNLEAKGGRLIIRQG----RADAVLKKLVQQTEAEAIYFNRDPDPFGRAMEERLTKI 115

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            +   I    + D  L     +L      +KV+TP+ KA ++       R++    +   
Sbjct: 116 ARDLGIRLHPYKDIALHERNEVLTGGGSPFKVFTPYAKAWLKLDKPEPTRAI--SKLSTP 173

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +P    +       +   GE  A   L  F    +++Y  +RD+PA +GTS+L
Sbjct: 174 PHIASDPLPTLHTWKLVGEAAILEPGEAAARKRLGCFLDGPIFHYQTRRDLPAEEGTSRL 233

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L  G LS R+ + +            +     ++NELIWREFY  ++  +P V   +
Sbjct: 234 SQDLRHGTLSIREVYAKCARAAEKAPAAHQRNIGIFINELIWREFYLQVLWHWPQVLDHE 293

Query: 306 PFIPWTEKIEWNKDS--------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            F     +++W               Q W +G TGFPI+DA MRQL   G+MHNR+RMI 
Sbjct: 294 -FQEDCRRLKWRDYWRPEKKDGGQDYQRWCRGETGFPIVDAGMRQLAATGFMHNRVRMIV 352

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           A FL KDL V W  GE +FM  L+DG++ASNNGGWQW+ASTG D+ PYFRI NP  Q KR
Sbjct: 353 AMFLTKDLHVWWMHGESWFMRHLVDGEIASNNGGWQWSASTGTDAAPYFRIQNPWSQSKR 412

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           FDP+G +I+ W+PEL +VP   + AP    +   L+ +YPLP+VDH +     L  +
Sbjct: 413 FDPEGAYIKRWVPELRDVPAGQLCAPPK--EGEALARDYPLPMVDHARERDVALEMF 467


>gi|257416128|ref|ZP_05593122.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis AR01/DG]
 gi|257157956|gb|EEU87916.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ARO1/DG]
          Length = 477

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 241/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFLRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGNKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L                ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|241764783|ref|ZP_04762791.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN]
 gi|241365713|gb|EER60409.1| Deoxyribodipyrimidine photo-lyase [Acidovorax delafieldii 2AN]
          Length = 488

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 174/495 (35%), Positives = 244/495 (49%), Gaps = 26/495 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M++T A    LVW R DLR  D+ ALY A      KV  VF+           + R+  F
Sbjct: 1   MESTYA--TGLVWFRRDLRACDHAALYHALTQC-RKVHCVFVFDRAILDALPRADRRVAF 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           I  +L+++  +L                 + + +       +   ++ N   E   + RD
Sbjct: 58  IREALVELDAALRTLASHPAGGLIVRHALATDAVPELAQALQAQAVYANHDDEPQALSRD 117

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            L+  RL    I   +F D  LL    +L  A   Y V+TP++ A ++ +    L+S  V
Sbjct: 118 SLVRTRLAQTGIAFHTFKDHTLLERDEVLTQAGTPYSVFTPYKNAWLRTIDAFQLQSYAV 177

Query: 180 --PAIRLTGPVTPSNIP--RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVE 232
              A RL     P  +P        F+A        P G   A+ +   F + +++ Y +
Sbjct: 178 VRHAHRLAPRPAPECLPVPALGALGFEAAQNTPLGLPTGSSGAMRLFEDFLQ-RIHRYAD 236

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            RD PAI+G S LS +L  G +SPR            L      GA +WLNELIWR+FY 
Sbjct: 237 TRDYPAIKGPSYLSVHLRFGTISPRLLARSAHA----LAQGGNPGATTWLNELIWRDFYC 292

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            ++A +P V + + F P  + I+W        L  AW +G TG+P++DAAM QLN  G+M
Sbjct: 293 QILAHHPHV-VERSFKPAYDAIQWETGDEAQALFSAWCEGRTGYPLVDAAMAQLNQTGYM 351

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNRLRM+ ASFLVK L +DWR GE YF + L D DLA+NNGGWQWA+S+G D+ PYFRIF
Sbjct: 352 HNRLRMVAASFLVKHLGIDWRWGEHYFATHLNDFDLAANNGGWQWASSSGCDAQPYFRIF 411

Query: 410 NPTIQGKRFDPQGTFIRHW-----LPELNNVPTQYIHAPHSWLDKN-DLSLNYPLPIVDH 463
           NP  Q ++FD +G FIR +        L  +   +   P    +    L  +YP PIVDH
Sbjct: 412 NPVSQSEKFDAEGRFIRRYLPQLAALPLAALHAPWRARPLELQEAGVVLGHHYPQPIVDH 471

Query: 464 KKACHHTLNQYYAAK 478
             A   TL +Y   K
Sbjct: 472 DSARQRTLQRYAVVK 486


>gi|257085148|ref|ZP_05579509.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1]
 gi|256993178|gb|EEU80480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1]
          Length = 477

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 241/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L                ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASAPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|301167819|emb|CBW27403.1| putative deoxyribodipyrimidine photolyase [Bacteriovorax marinus
           SJ]
          Length = 434

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/473 (35%), Positives = 228/473 (48%), Gaps = 46/473 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V + W R DLR+ DN  LY A  NS   V+ +FI       +      +  FI+  L  
Sbjct: 7   KVSIFWFRRDLRVEDNIGLYHAL-NSSFPVLPIFIFDKNILNKLERDDSRVSFIHECLQN 65

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +   +          S  +   E  +S+     V +++ N  YE   + RDK +E  L
Sbjct: 66  LSEKFRKYDGDLLTFYNSPKNAWKEIFESF----DVQEVYTNEDYEPYALSRDKSIEDYL 121

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +  +  +S+ D  +     IL      Y VYTP++   ++ L  +DL S+         
Sbjct: 122 TRKGIKFQSYKDQCIFSKFDILKKDGTPYTVYTPYKNKWLETLQPSDLASIKSEKNLSKI 181

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               S I       F      FP          R   K+ +  Y E RD+P+I GTS L 
Sbjct: 182 YKFKSEIHSLMSLGFTKSHISFPK---------RIIKKKIITNYHETRDLPSINGTSLLG 232

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR+  +                  +WLNELIWREF+  ++  +P V +  P
Sbjct: 233 VHLRFGTIGPRKLASIAYHTNK-----------TWLNELIWREFFSQILFHFPHV-VNAP 280

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    E IEW  +    + W +G TGFP++DA MR+LN  G MHNR+RM+ ASFLVKDLL
Sbjct: 281 FREKYESIEWRNNKEEFKLWCEGRTGFPLVDAGMRELNQTGHMHNRVRMLVASFLVKDLL 340

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GE+YF  +LLD DLASNNG WQWAA TG D+ PYFRIFNPT Q K+FDP   +++
Sbjct: 341 IDWRWGEKYFAKKLLDFDLASNNGNWQWAAGTGCDAAPYFRIFNPTTQIKKFDPDLIYVK 400

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            W+PE                     S NY   IVDHK+A H  +  Y  A K
Sbjct: 401 KWVPEYG-------------------SDNYTEEIVDHKEAYHRAIFTYNKALK 434


>gi|330752085|emb|CBL80595.1| deoxyribodipyrimidine photolyase [uncultured Leeuwenhoekiella sp.]
          Length = 434

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/474 (30%), Positives = 219/474 (46%), Gaps = 48/474 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SV + W R DLR+ DN     A   SD  V+ +FI   E   +      +  FIY +L +
Sbjct: 3   SVSIFWFRRDLRLDDNVGFLEALK-SDYPVLPIFIFDKEILDKLPKDDARVTFIYETLQK 61

Query: 68  VQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  L               +   I+          V +++ NR YE    RRD+ +   
Sbjct: 62  MRDRLQNDHTSSL----ALFYGKPIDIWKQILKDYEVKEVYTNRDYEPYAKRRDEEISSL 117

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            + + +  K+F D V+     ++    + Y VYTP++   ++   + +   +   +  L 
Sbjct: 118 FEEKDIDFKTFKDQVIFEKDDVVKGDGEPYIVYTPYKNKWLETFNEDNDLKIHYTSQHLN 177

Query: 186 GPVTPSNIP--RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             V  S +P     +  F+      P                 +  Y + R+ PA  GTS
Sbjct: 178 NLVENSRLPNLTLSEMGFKTSSLKVPD---------YDVTPTLIDNYEDTRNFPAQDGTS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +L P+L  G +S R+   +   E   +          + +EL+WREF+  ++  YP    
Sbjct: 229 RLGPHLRFGTVSVRKMVKKALAENNQV----------FWSELVWREFFMQILYHYPETI- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    ++I+W  +    + WK G TGF ++DA MR+LNT G+MHNR+RM+TASFL K
Sbjct: 278 NNAFRKKYDRIDWRNNEEEFEKWKTGTTGFLLVDAGMRELNTTGYMHNRVRMLTASFLCK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF  +LLD + ASN G WQWAA +G D+ PYFRIFNP  Q  +FD +  
Sbjct: 338 HLLIDWRWGETYFAEKLLDYEQASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKERK 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I  ++PE +                   +  YP  +VDHK+A    L  Y  A
Sbjct: 398 YIEKFIPEYD-------------------TSEYPEKMVDHKEARERCLKTYKQA 432


>gi|260765933|gb|ACX49997.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 674

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/490 (28%), Positives = 227/490 (46%), Gaps = 25/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++  SL Q+  
Sbjct: 18  IVWFRRDLRVEDNPALAAAVRAG--PVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L   
Sbjct: 76  SLRSLGTCLITKRST---DSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQ 132

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSK 192

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             + P  F+   +      +   +  G  NA   L  F    +  Y + R       TS 
Sbjct: 193 CVSDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 252

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +P 
Sbjct: 253 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 311

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 312 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 371

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 372 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 431

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYP PIV   +A       L
Sbjct: 432 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEAL 491

Query: 472 NQYYAAKKQS 481
           +Q +  +  S
Sbjct: 492 SQMWQLEAAS 501


>gi|325923198|ref|ZP_08184882.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC
           19865]
 gi|325546322|gb|EGD17492.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC
           19865]
          Length = 472

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 229/480 (47%), Gaps = 17/480 (3%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW R DLR+ DN AL AA     A  I ++I  P +  +    A    + + SL 
Sbjct: 1   MSYAIVWFRRDLRLQDNPALRAALDAGHAP-IPLYIDAPHEEGEWAPGAASRSWRHRSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L   G            DS + LD    Q     +++NR+YE     RD  +++ 
Sbjct: 60  ALDAALRALGSGLVIR----AGDSAQVLDEMIEQTGAVAVYWNRKYEPATQPRDAQIKRS 115

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+ R I  +S + ++L+ P  +       YKV+TP+ +  +  L      + P     L 
Sbjct: 116 LRERGIEVQSCNAALLMEPWQLSTQQGGPYKVFTPYWRNALTQLQLPAAVAAPRSLPALP 175

Query: 186 GPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +  + +      P    D      +  GE  A  +L  F    +  Y E RD P   G
Sbjct: 176 ATLKSAALETLGLVPKLDWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVG 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLSP+L  G ++P +  + L+    +   +  +    ++ +L WR+F  HL+  +P  
Sbjct: 236 TSQLSPHLHFGEIAPWRIASTLE---ANRNARNSAEIDGYIRQLGWRDFAYHLLHHFPD- 291

Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              +   P  E  +W K D   LQAW++G TG PI+DA MRQL   GWMHNR+RMI AS 
Sbjct: 292 TTNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASL 351

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L + W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDP
Sbjct: 352 LCKHLRIHWIEGARWFWETLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411

Query: 421 QGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
           Q  +I  W+PEL  +  +   AP  S L     +  YP  PI+   +     L  Y   +
Sbjct: 412 QAAYITRWVPELGKLAVKERFAPWLSPLSLARFAPKYPRTPIIGLAEGRDAALAAYAKTR 471


>gi|323480758|gb|ADX80197.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62]
          Length = 477

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/478 (34%), Positives = 243/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWINDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIV++  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVNYASSKKQTLFLYEASKE 466


>gi|148909202|gb|ABR17701.1| unknown [Picea sitchensis]
          Length = 655

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/482 (30%), Positives = 223/482 (46%), Gaps = 26/482 (5%)

Query: 7   MSVH--LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS +  +VW R DLR+ DN AL A        VI ++I +PE+  Q+        ++  S
Sbjct: 1   MSTNCSIVWFRRDLRVEDNPALAAGVRAG--AVIVLYIWSPEEEGQYYPGRVSRWWLKQS 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G      + +N   SI  +         T+LFYN  Y+   + RD  L+
Sbjct: 59  LAHLDSSLRNLGARLITKRSTN---SISAILQVVQATGATQLFYNHLYDPLSLVRDHKLK 115

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L  R I  +SF+  +L  P  + +     +  +  +    +       L  L  P   
Sbjct: 116 QDLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYD-PLAPLLPPKRI 174

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           + G V+  PS+     D   +A + +    +  G  +A   L  F    +  Y   R   
Sbjct: 175 VAGEVSNCPSDDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYAINRQKA 234

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293
               TS LSP+L  G LS ++ ++ L+   V    +  +        +L  +  RE+ R+
Sbjct: 235 DSATTSLLSPHLHFGELSVKKVFHLLRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRY 294

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +PS    KP +       W  DS   ++W+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 295 LSFNFPS-SHEKPLLSHLNYFPWRVDSDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRI 353

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL  +  GWQ+ +    D     RI NP  
Sbjct: 354 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQF 413

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC 467
           +G +FDP G ++R WLPEL  +PT++IH P             +L  NYPLPIV+   A 
Sbjct: 414 EGYKFDPAGEYVRRWLPELARLPTEWIHHPWDAPRAVLQAAGVELGSNYPLPIVEISTAK 473

Query: 468 HH 469
             
Sbjct: 474 ER 475


>gi|76802655|ref|YP_330750.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
 gi|76558520|emb|CAI50112.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
          Length = 462

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/475 (33%), Positives = 234/475 (49%), Gaps = 21/475 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + + W R DLR+ DN+ L  A      + + +F+           +  +  F+  +L  +
Sbjct: 1   MRIHWHRRDLRVADNRGLADA----PGRPVGLFVFDEAVLD--HAAPPRVAFLLDALSSL 54

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +   +G      +     D    L +      V  + +NR Y      RD  +   L 
Sbjct: 55  RAAYRDRGSELFIRRG----DPANVLSALADDLGVDVVSWNRDYSGLAADRDDRVADVLD 110

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  + F D++  PPG+I  +A   Y VY+ F K              P P   L   
Sbjct: 111 EVGVTPQRFHDAICHPPGTITTNAGDPYSVYSYFWKKWRDREKDD-----PYPVPALADA 165

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              + +P   D  F       P  G   A   L  F ++ +Y Y E RD PA + TS+LS
Sbjct: 166 TDETTLPTLADLGFDEPTAELPKAGTAPARGRLAAFLEDDIYRYEEARDYPATECTSRLS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
             L  G +  R    +++E         +   A  + ++L WREFY H++AF P V   +
Sbjct: 226 ADLKFGTIGIRAVDKQVREAIAAAETDSERESAAEFRSQLAWREFYTHVLAFNPEVVT-E 284

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +  +   I+W  D  LL AWK+G TG+PI+DA MRQL    +MHNR+RMI ASFL KDL
Sbjct: 285 NYKRYEHDIDWEDDPELLAAWKRGETGYPIVDAGMRQLQAEAYMHNRVRMIVASFLTKDL 344

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR G  +F  +L+D D A++NGGWQWAASTG D+ PYFRIFNP  QG+R+DP   +I
Sbjct: 345 LIDWRHGYAHFRDRLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYDPDAEYI 404

Query: 426 RHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R ++PEL+ V    IH+ H  S   + + +  YP P+VDH +     L+ +  A+
Sbjct: 405 REYVPELSGVEADVIHSWHELSPTQRANAAPEYPQPVVDHSQRREQALDMFEQAR 459


>gi|260062651|ref|YP_003195731.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
           HTCC2501]
 gi|88784218|gb|EAR15388.1| deoxyribodipyrimidine photolyase-class I [Robiginitalea biformata
           HTCC2501]
          Length = 434

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/476 (31%), Positives = 227/476 (47%), Gaps = 49/476 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             SV++ W R DLR+ DN+ L  A   +   V+ +FI   E          +  F++  L
Sbjct: 2   GKSVNIFWFRRDLRLEDNRGLCEAL-GAGRPVLPIFIFDSEILDGLPADDPRVTFLHDRL 60

Query: 66  LQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
            +++  + + +G     +        +E          V ++F NR YE     RD+ + 
Sbjct: 61  QELRSRMQENQGSSLAIYHGKP----LEIFKELASDWDVGQVFTNRDYEPYARDRDEQVG 116

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L  + I   +F D V+     ++      Y VYTP+ K   Q      L +    A +
Sbjct: 117 QWLSEQGIEFHTFKDQVIFEKDEVVKDDGDPYVVYTPYMKKWKQVFRDTPLATF-DSAGQ 175

Query: 184 LTGPVTPSNIPR--FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           L   +  S +P     D+ F+      P  +            + +  Y + R+ PA +G
Sbjct: 176 LGNLIAHSRLPNPDLADFGFERSAIPVPDYDMGG---------KLIDAYEDNRNYPAREG 226

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+L P+L  G +S RQ   +  E          S   ++ NELIWREF+  ++  +P  
Sbjct: 227 TSRLGPHLRFGTISIRQALGKALE----------SSNETFWNELIWREFFMQILWHFPR- 275

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            + + F    ++I W  D    + W++G TGF ++DA MRQLN  G+MHNR+RM+TASFL
Sbjct: 276 TVHEAFRKEYDRIAWRNDESEFEKWREGRTGFALVDAGMRQLNASGYMHNRVRMLTASFL 335

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+DWR GE YF  +LLD ++ASN G WQWAA +G D+ PYFRIFNP  Q  +FD  
Sbjct: 336 CKHLLIDWRWGEAYFAEKLLDYEMASNVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKD 395

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            ++IR W+PE                     + +YP  +VDHK A    L  Y AA
Sbjct: 396 KSYIREWIPEYG-------------------TEDYPEKMVDHKAARERCLKTYKAA 432


>gi|257086709|ref|ZP_05581070.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6]
 gi|256994739|gb|EEU82041.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6]
 gi|315027232|gb|EFT39164.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2137]
          Length = 477

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 241/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFINQKLRSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L                ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|256762534|ref|ZP_05503114.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3]
 gi|256683785|gb|EEU23480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3]
          Length = 473

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/477 (35%), Positives = 241/477 (50%), Gaps = 24/477 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   ++
Sbjct: 1   MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            + Q     + H      + ++       +      +++N        +RD+   +  + 
Sbjct: 58  RIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEE 112

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  +
Sbjct: 113 NNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACL 172

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS +
Sbjct: 173 FPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTF 232

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +   
Sbjct: 233 LRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAIQ 285

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +D
Sbjct: 286 EKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHID 345

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ +
Sbjct: 346 WRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKY 405

Query: 429 LPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 406 VPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 462


>gi|315150502|gb|EFT94518.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0012]
          Length = 477

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/478 (34%), Positives = 239/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y   RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENNRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R     L                ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIRQEL------ASAPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|117924446|ref|YP_865063.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus sp. MC-1]
 gi|117608202|gb|ABK43657.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus sp. MC-1]
          Length = 476

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/472 (32%), Positives = 226/472 (47%), Gaps = 33/472 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              +VW R DLR++DN AL AA       V+ V+I    Q  Q G        +  +L  
Sbjct: 6   PTVIVWFRRDLRLSDNPALLAATAMGQ--VLPVYIHENNQ--QEGGGGAWRWGLQQALAA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L  K        C    D    L         T +++NR Y    ++RD+ +++ L
Sbjct: 62  LNADLQGKL-------CCYVGDPARLLPEVAHAVGATGVYWNRLYTPQAIKRDRAIKQSL 114

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF--RKALIQNLVQADLRSLPVPAIRL 184
             R +  +SF+ S+L  P  +L      YKV+TP+  R  L+Q++ +  + + P      
Sbjct: 115 IERGLQVRSFNGSLLWEPWQVLKADKTPYKVFTPYYRRGCLVQDVPRQPMDAPPTVTWAT 174

Query: 185 TGPVTPSNIPRFFD-------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                P+   +  D          +    ++ +GE+ A      F    +  Y + RD P
Sbjct: 175 LPAAAPAPSMQALDALLLGDVSWHKKWHGIWSMGEEAAQTRFEHFLSHGLACYDQGRDFP 234

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
               TS+LS  L  G+LSP Q W  L+    D     +     + +EL WREF  + +  
Sbjct: 235 GRDCTSRLSTALQYGLLSPNQVWYGLEHAKAD-----EHSVDKFRSELAWREFAYYQLFH 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +PS+   K F P  +   W +D   L  W+ G TG PI+DA MR+L   G MHNR+RM+ 
Sbjct: 290 FPSLP-HKNFQPKFDHFPWLEDEVALGRWQTGQTGIPIVDAGMRELWQTGVMHNRVRMLV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFLVK+LL+DWR G  +F   L+D DLA N+  WQW A  G D+ PYFRIFNP  QG++
Sbjct: 349 GSFLVKNLLLDWRAGAAWFKDCLVDYDLAINSASWQWVAGCGADAAPYFRIFNPVTQGEK 408

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDH 463
           FD  GT+ R ++PEL N+P QY+  P              L  +YP P+VD 
Sbjct: 409 FDRNGTYTRRFVPELANLPDQYLFKPWMAPASILRQAGVRLGQDYPEPLVDL 460


>gi|257082516|ref|ZP_05576877.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol]
 gi|256990546|gb|EEU77848.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol]
          Length = 477

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLKHYSVGEKTARRCLNTFINQKLRSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|327402941|ref|YP_004343779.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823]
 gi|327318449|gb|AEA42941.1| Deoxyribodipyrimidine photo-lyase [Fluviicola taffensis DSM 16823]
          Length = 434

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/474 (34%), Positives = 226/474 (47%), Gaps = 48/474 (10%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L W R DLRI+DN  LY A   S  KV A+FI   +       + ++  FI+ ++  +Q
Sbjct: 5   ALFWHRRDLRISDNAGLYKALK-SGLKVQAIFIFDSQILAHLSKNDQRVLFIHQTIQNLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           ++  + G            +  E +     +  +  +F NR YE N ++RDK +   L +
Sbjct: 64  QAYQKLGASLWIFHG----NPTEIIPQLVQKHEIKHVFCNRDYEPNALKRDKSVYDALTK 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTGP 187
                    D V+     I+      Y V+TP+ K   + L    L+  PV   I    P
Sbjct: 120 IGCQFSGSKDHVIFEKEEIVKSDGNPYHVFTPYMKRWKEQLNDFYLQPYPVEKYIHNLNP 179

Query: 188 VTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                +P   +  F  I    FP  E           +  +  Y   RD PAI GT++LS
Sbjct: 180 NNHVELPTLSELGFSEIQTQHFPSAE---------IPQTIIQSYENTRDFPAINGTTRLS 230

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G +S R+   +  +               + NELIWR+FY+ ++ FYP     + 
Sbjct: 231 IHLRFGTISIRELAKQALKTN-----------EKYFNELIWRDFYQMILFFYPRTIE-ET 278

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F     +IEW  D  L QAW  G TG+P++DA MR+LN  G MHNR+RM+ ASF  K L 
Sbjct: 279 FRKEYGRIEWEFDEKLFQAWCDGKTGYPLVDAGMRELNETGHMHNRVRMVVASFFCKHLF 338

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
            DW++GE YF  +LLD +LASN GGWQWAA  G D+ PYFRIFNPT Q +RFDPQ  +I+
Sbjct: 339 HDWKLGERYFAEKLLDFELASNVGGWQWAAGCGVDAAPYFRIFNPTTQQERFDPQFEYIK 398

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PE                     + +YP PIV+HK A   TL  Y    K 
Sbjct: 399 KWVPEFG-------------------TSDYPQPIVEHKWARERTLENYKKVLKA 433


>gi|315147299|gb|EFT91315.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4244]
          Length = 477

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 241/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L                ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|255972759|ref|ZP_05423345.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1]
 gi|255963777|gb|EET96253.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1]
          Length = 473

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/477 (35%), Positives = 241/477 (50%), Gaps = 24/477 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   ++
Sbjct: 1   MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            + Q     + H      + ++       +      +++N        +RD+   +  + 
Sbjct: 58  RIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEE 112

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  +
Sbjct: 113 NNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACL 172

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS +
Sbjct: 173 FPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLSTF 232

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +   
Sbjct: 233 LRTGELSIRTIWQEL------ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAIQ 285

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +D
Sbjct: 286 EKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHID 345

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ +
Sbjct: 346 WRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKY 405

Query: 429 LPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 406 VPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 462


>gi|229545787|ref|ZP_04434512.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322]
 gi|256619098|ref|ZP_05475944.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200]
 gi|256853160|ref|ZP_05558530.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8]
 gi|307274924|ref|ZP_07556087.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134]
 gi|307291962|ref|ZP_07571831.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411]
 gi|229309099|gb|EEN75086.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322]
 gi|256598625|gb|EEU17801.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200]
 gi|256711619|gb|EEU26657.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8]
 gi|306496960|gb|EFM66508.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411]
 gi|306508372|gb|EFM77479.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134]
 gi|315029350|gb|EFT41282.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4000]
 gi|315034003|gb|EFT45935.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0017]
          Length = 477

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 241/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L                ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEVI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|207728124|ref|YP_002256518.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
           solanacearum MolK2]
 gi|206591369|emb|CAQ56981.1| deoxyribodipyrimidine photolyase, class 1 protein [Ralstonia
           solanacearum MolK2]
          Length = 522

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/490 (34%), Positives = 240/490 (48%), Gaps = 31/490 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V   F+               + R+  FI A++
Sbjct: 27  GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLARGLRADRRVEFIRAAV 85

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ +L + G           D +   + S   Q  V  +F N   E   + RD  +  
Sbjct: 86  EALRGALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 141

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L  +      F D V+     +LN   + Y V+TP++ A +  +   DLR+ P+     
Sbjct: 142 ALARQPCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 201

Query: 185 TGPVTPSNI----PRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                P  +    P      F   +      P G   A  +L  F   ++  Y  +RD P
Sbjct: 202 ALARPPQGLAPATPSLEAMGFARSNLSAIALPTGMSGAKALLDDF-ATRMDDYHARRDYP 260

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S R     L       ++    GA +WL+ELIWR+FY  ++  
Sbjct: 261 AVRGPSYLSTHLRFGTVSIRT----LAAHAHAAMLHGSRGAATWLSELIWRDFYFMILHH 316

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P +  G  F P  ++I W +         AW+   TG+P++DAAM Q+   G+MHNRLR
Sbjct: 317 RPDLADGASFRPEFDRIRWVEGDAGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLR 376

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL+KDL VDWR GE YF   L D D A+NNGGWQWAAS+G D+ P+FRIFNP  Q
Sbjct: 377 MVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQ 436

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468
            ++FDPQG FIR +LP+L  +P +Y+HAP +            L   YP PIV+H  A  
Sbjct: 437 SEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPQPIVEHAAARA 496

Query: 469 HTLNQYYAAK 478
            TL +Y  A+
Sbjct: 497 ATLERYAPAQ 506


>gi|260765931|gb|ACX49996.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 660

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++  SL Q+  
Sbjct: 18  IVWFRRDLRVEDNPALAAAVRAG--PVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L   
Sbjct: 76  SLRSLGTCLITKRST---DSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQ 132

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSK 192

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  NA   L  F    +  Y + R       TS 
Sbjct: 193 CVTDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 252

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +P 
Sbjct: 253 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 311

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 312 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 371

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 372 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 431

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYP PIV   +A       L
Sbjct: 432 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEAL 491

Query: 472 NQYYAAKKQS 481
           +Q +  +  S
Sbjct: 492 SQMWQLEAAS 501


>gi|91217400|ref|ZP_01254360.1| deoxyribodipyrimidine photolyase-class I [Psychroflexus torquis
           ATCC 700755]
 gi|91184508|gb|EAS70891.1| deoxyribodipyrimidine photolyase-class I [Psychroflexus torquis
           ATCC 700755]
          Length = 457

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 156/476 (32%), Positives = 226/476 (47%), Gaps = 47/476 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V + W R D+R+ DN  LY A  +    V+ +FI       +      +  FI+  L +
Sbjct: 26  KVRVFWFRRDMRLEDNVGLYHAL-SGVFSVVPLFIFDKNILNELQEDDARISFIFEQLQK 84

Query: 68  VQKSLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  L    G     +  +  +   E L  +     V  ++ NR YE    +RD  +   
Sbjct: 85  MRSHLQDHYGSSIATYHSTPEEAFHELLKDF----EVEAVYTNRDYEPYAHQRDSKINTL 140

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-VPAIRL 184
           L ++ I    F D V+     +  +   MY V+TP+ +   +     DL++ P    +  
Sbjct: 141 LANQGIEFHDFKDQVIFEKTEVEKNDGGMYLVFTPYMRQWKKEFENIDLKTFPSEDHLDN 200

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           T   +        D  F       P              K+ + +Y + R+IP+I+GTS+
Sbjct: 201 TYKNSMLPDVSLSDMGFVKSSIQVPD---------YNITKDLLEHYEDTRNIPSIEGTSR 251

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G++  R+          +          ++LNELIWREFY+ ++  +P     
Sbjct: 252 LSPYLRFGLIGYRKLIQAALSVKNE----------TFLNELIWREFYKAILYNHPK-TQN 300

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F P  ++IEW  D +  + WK+G TG+PI+DA MRQLN  GWMHNRLRM+  SFL K 
Sbjct: 301 SAFKPKYDRIEWRNDENEFEKWKKGKTGYPIVDAGMRQLNETGWMHNRLRMVVGSFLCKH 360

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWR GE YF  +LLD +++SN GGWQW A +G D+ PYFRIFNP  Q  RFD    +
Sbjct: 361 LLIDWRWGEAYFAEKLLDYEMSSNVGGWQWVAGSGVDAAPYFRIFNPYSQTDRFDKDKKY 420

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           I  W+PELN                   +  YP P+VDHK A    L  Y  A K 
Sbjct: 421 IMKWIPELN-------------------TDRYPKPMVDHKIARERCLETYKEAVKS 457


>gi|126439700|ref|YP_001059701.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668]
 gi|126219193|gb|ABN82699.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668]
          Length = 486

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 155/494 (31%), Positives = 241/494 (48%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    ++L                D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174

Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230
                  P   +      D    +   P +  G        E  A   LR F   ++  Y
Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+EL WREF
Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L+  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 GWTLLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P +            L   YPLPIV H 
Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 473 AARRRALDAFGAIR 486


>gi|330927872|ref|XP_003302036.1| hypothetical protein PTT_13712 [Pyrenophora teres f. teres 0-1]
 gi|311322808|gb|EFQ89849.1| hypothetical protein PTT_13712 [Pyrenophora teres f. teres 0-1]
          Length = 534

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/494 (29%), Positives = 233/494 (47%), Gaps = 35/494 (7%)

Query: 12  VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            W    DLRI DN AL+ A     ++   ++ +++  P     HG S  +  F+   L  
Sbjct: 50  HWFHPKDLRIQDNTALHHASELAQSARKPLVCIYVDCPADESWHGTSPARVDFMCEGLKI 109

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK L    I   + QC N    +E    +  +Q+V+ +F N +YEI+E+RRD  L K +
Sbjct: 110 MQKELKDLNIPLVFLQCENRKKIVETAVEWLKKQQVSHVFGNYEYEIDEMRRDFKLVKTV 169

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             ++    + D  ++ PG++L       KV+TP+ KA +  L          P       
Sbjct: 170 GDKIQVSLYHDQTVVEPGTMLTGTGTPMKVFTPYHKAWLAKLRSEPELLDTNPPPAANPS 229

Query: 188 VTPSNIPRFFD---------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
               ++   FD                  + I  ++P G   A   +  F K+ + +Y  
Sbjct: 230 SMKKDLKDLFDTLAPKPASDKQFTSEEEKKRIRKLWPAGHSAASARMDTFLKQ-ISHYAA 288

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD----LLIKPKSGAFSWLNELIWR 288
            R  PA   TS++S Y S G++S R    ++ +           K  +G + W+ E+++R
Sbjct: 289 TRSNPAANSTSRMSAYFSAGMISMRSTLQKVVDYNRGSTDFTEAKASTGVYGWVREIVFR 348

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E YR      P   M  P     + ++W  D    + W +G TG P IDA MRQLN   +
Sbjct: 349 ELYRQTTMTTPHTSMNLPQNLKFDAVQWEDDEEGWEKWYKGQTGEPFIDAGMRQLNAEAY 408

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM  +S+L  +LL+D+R GE YF   L+D DL++N  GW+          P + +
Sbjct: 409 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYTV 458

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKAC 467
           FNP  Q ++ DP G +IR W+PEL +V  + + AP++ L K +   L YP P VD K+  
Sbjct: 459 FNPVSQAEKNDPDGEYIRKWVPELRHVEGKAVFAPYARLSKKEFEKLGYPKPHVDWKETK 518

Query: 468 HHTLNQYYAAKKQS 481
              ++++    + +
Sbjct: 519 ARAIDRFKRGLRSA 532


>gi|167570597|ref|ZP_02363471.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis C6786]
          Length = 486

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/494 (30%), Positives = 234/494 (47%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  +++  +VW R+DLR++D+ AL  A   S   VI  ++   E      +      +
Sbjct: 1   MSAVFSIAPAVVWFRDDLRVSDHPALVRAAE-SGRPVIGAYVFD-ECAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G            D  + + S+        +++NR+Y + +   D
Sbjct: 59  LHGSLRALDAALAALGSRLVLLSG----DEADTITSFAAALGAGAVYWNRRYALAQRAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L+ R I  ++F+ S+L  PG ++  + + Y+V+T + +A ++  V A   + P 
Sbjct: 115 NTVQTALEARGIDVETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHAAPLAAPR 174

Query: 180 PAIRL-TGPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230
                   P                  P +  G        E  A   LR F   ++  Y
Sbjct: 175 RLKGCELPPRLAQRQVELDALGLAPARPDWAGGLRETWTCGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              RD P    TS+LSP++  G LS RQ W+   +         ++   ++  EL WREF
Sbjct: 235 ATGRDRPGAASTSRLSPFVRFGNLSVRQVWHAAVDAHAH-GAATQADLDTFCRELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 CYGQLYRFPDLAR-RNLRHNLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RM+ ASFLVK LL+DWR G+ +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRARMVCASFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QGK+FDP G ++R W+PEL  +P   IH P +            L   YPLPIV H 
Sbjct: 413 PIAQGKKFDPDGAYVRRWVPELAGLPANAIHEPWAAPAARLAAAGVRLGDTYPLPIVAHD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ +   +
Sbjct: 473 AARKRALDAWVTVR 486


>gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin]
          Length = 587

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/498 (24%), Positives = 201/498 (40%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  + KL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLRSL-PVPA 181
                 +         L     I+  +  Q    Y  F+  + +   ++  + ++ P   
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175

Query: 182 IRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            + T PV+  +  +       +  F        ++P GE  AL  L +  + K +    +
Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|82091801|sp|Q6ZZY0|CRY1_SYLBO RecName: Full=Cryptochrome-1
 gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin]
          Length = 620

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/498 (24%), Positives = 201/498 (40%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  + KL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLRSL-PVPA 181
                 +         L     I+  +  Q    Y  F+  + +   ++  + ++ P   
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175

Query: 182 IRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            + T PV+  +  +       +  F        ++P GE  AL  L +  + K +    +
Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|260765927|gb|ACX49994.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765929|gb|ACX49995.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 684

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++  SL Q+  
Sbjct: 18  IVWFRRDLRVEDNPALAAAVRAG--PVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 75

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L   
Sbjct: 76  SLRSLGTCLITKRST---DSVASLLXVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 132

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 133 GIAVRSFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSK 192

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  NA   L  F    +  Y + R       TS 
Sbjct: 193 CVTDPLVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 252

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +P 
Sbjct: 253 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 311

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 312 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 371

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 372 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 431

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYP PIV   +A       L
Sbjct: 432 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEAL 491

Query: 472 NQYYAAKKQS 481
           +Q +  +  S
Sbjct: 492 SQMWQLEAAS 501


>gi|195997383|ref|XP_002108560.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens]
 gi|190589336|gb|EDV29358.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens]
          Length = 497

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/490 (30%), Positives = 230/490 (46%), Gaps = 20/490 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +VWLR DLR+ DN AL+ A       V+ ++I   E   +  +      +++ SL 
Sbjct: 1   MVCTVVWLRYDLRLIDNPALFHAAKRG--HVVIIYILDQETPGKWKLGKASLWWLHHSLK 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q  L +  I     + +   D +  L    LQ R   +++NR YE   V+RD+ +E+ 
Sbjct: 59  SLQNDLLKFNIPLILRRGA---DPLTILRQVLLQSRADAVYWNRCYEPYAVKRDQSIEEA 115

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   V   SF   +L  P ++ +   + +K+Y  +    + +         P     L 
Sbjct: 116 LKVDDVTVGSFQAGLLYEPWAVKSAKDEPFKLYIMYWNRCLSSDQPRKPYDKPRFNNTLD 175

Query: 186 GPVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             V    +  +       D+  +    +   GE  A+  L++F K K+  Y + ++    
Sbjct: 176 IKVQTDTLDSWHLVSAKKDWKDELKIVIGCPGEDGAIRKLKEFIKYKLVDYRKGKETVWP 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TSQLS +L  G +SP   W+  KE  V L   P   +  +L EL WR+F  HL+ +YP
Sbjct: 236 SKTSQLSTHLHFGEISPFVVWHTAKE-SVHLRSVPSDSSQKFLTELGWRDFCFHLLHYYP 294

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                K +    ++  W  D   L+ W+QG TG+PI+DA MR+L   G +  R+R I AS
Sbjct: 295 DFPE-KSYKLNFDETIWKVDKEKLKLWQQGKTGYPIVDAGMRELLNTGVISYRVRTIVAS 353

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K LL+ W+ G E+F   L+D DLA N+  WQ     G D   YF I NP  QG+RFD
Sbjct: 354 FLTKHLLIPWQNGAEWFWDTLVDADLALNSCSWQRITGCGADISSYFYIINPVTQGERFD 413

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473
             G ++R W+PE+  +   YI  P              L   YP  IV+HKKA    L +
Sbjct: 414 SDGNYVRKWIPEIAKLSNDYIQQPWEAPAAVLKKAGIALGKTYPKCIVNHKKARDVALTK 473

Query: 474 YYAAKKQSLL 483
           +   K+Q  +
Sbjct: 474 FAPLKRQEPM 483


>gi|124007987|ref|ZP_01692687.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134]
 gi|123986571|gb|EAY26370.1| deoxyribodipyrimidine photo-lyase [Microscilla marina ATCC 23134]
          Length = 447

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 243/478 (50%), Gaps = 50/478 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLL 66
           S+ + W R DLR+ DN  LY A  N +  V+ +FI               +  +IYA+L 
Sbjct: 3   SITVFWFRRDLRLHDNTGLYEALKN-EQNVLPIFIFDRHILDDLEDKKDLRVAYIYAALQ 61

Query: 67  QVQKSLSQKGI----VFQYHQCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDK 121
           Q+Q+SL+        V+  +    F+   +   +   +  +V  ++ N  YE    +RD+
Sbjct: 62  QIQQSLADDLQSSLKVYYDYPEQVFEQLTQAGITLNGETYQVKSVYTNHDYEPYARQRDE 121

Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL--RSLP 178
            +++ L +  V   SF D V+     +L +A + Y V+TP+ K    +L  A L  R + 
Sbjct: 122 KVQQILSNSGVAWHSFKDQVIFEKQEVLTNADKPYTVFTPYSKKWKHHLTDAHLQERLVA 181

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             A  L        +       F  I+  F           +   K+ V  Y + RD PA
Sbjct: 182 SHAQNLLKLSPQLPLMPLEKTGFVDINKSFSS---------KTIKKQLVIDYQQNRDFPA 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +QGTS+LS +L  G +S R+     ++            + +WLNELIWREFY  ++  +
Sbjct: 233 VQGTSRLSVHLRFGTVSIRKIVKAAQKY-----------SDTWLNELIWREFYMMILYSF 281

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P V + K F P  + I+W  +    + W +G TG+PI+DA MR+LNT G+MHNR+RMITA
Sbjct: 282 PHV-VDKSFKPAYDCIQWRNNPDEFKRWCEGTTGYPIVDAGMRELNTTGFMHNRVRMITA 340

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE YF  +LLD DL++NNGGWQWAA +G D+ PYFR+FNP  Q ++F
Sbjct: 341 SFLTKHLLIDWRWGEAYFAKKLLDYDLSANNGGWQWAAGSGCDAAPYFRVFNPYAQTEKF 400

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           D Q  +IR W+PE                        YP PIV+HK A    L+ Y A
Sbjct: 401 DKQRQYIRQWVPEFEL-------------------SRYPAPIVEHKFARQRALDTYKA 439


>gi|257089919|ref|ZP_05584280.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188]
 gi|256998731|gb|EEU85251.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188]
          Length = 477

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSTC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRGGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
 gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
          Length = 484

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/485 (28%), Positives = 226/485 (46%), Gaps = 31/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASL 65
           L+W RNDLR+ D+  L+ A   S+A VI  +   P Q+ Q           ++ F+  S+
Sbjct: 4   LIWFRNDLRLHDHAPLHQAVR-SNADVIPCYCFDPRQFGQTPFGFPKTGPFRAQFLLESV 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL  K       Q          L       +V  +++NR+    E+  +  L  
Sbjct: 63  ADLRQSLRGKQSDLILRQG----HPETVLPELAQALKVETVYFNREVTAEEIEVENRLRS 118

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    + C  F  S L  P  +     ++ +V+T FRK + ++         P  ++  
Sbjct: 119 ALADLGIECLRFWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPKAPFPTP-QSLST 177

Query: 185 TGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKE--KVYYYVEQRDI 236
              + P  +P+  D+   + +P       F  GE  AL  L+ +  E  ++  Y E R+ 
Sbjct: 178 LPDIAPGELPQLEDWGLSSPEPDARAMIQFSGGETAALARLQDYIWEQDRLKRYKETRNG 237

Query: 237 PAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
                 S + SP+L++G +SPR    ++K    D +    +  +  + ELIWR+++R + 
Sbjct: 238 MLQPNDSTKFSPWLALGCVSPRYIHQQVKTYEQDRV--KNNSTYWLIFELIWRDYFRFIC 295

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A +         +     + W  +    + W+ G TGFP+IDA MR+L   G+M NR R 
Sbjct: 296 AKHGKRVFRVSGLQGL-ALPWQDNRETFEKWQTGQTGFPLIDANMRELAATGFMSNRGRQ 354

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL K+L ++W++G E+F S L+D D+ SN G W +AA  GND+   FR FN   Q 
Sbjct: 355 NVASFLTKNLGLNWQMGAEWFESCLIDYDVCSNWGNWNYAAGVGNDARG-FRFFNIVKQA 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K +DPQG ++RHWLPEL +VP   +  P              +  +YP P+VD  ++   
Sbjct: 414 KDYDPQGDYVRHWLPELKDVPGGQVQTPWQLTALEQEMFGLTIGKDYPEPMVDLWQSAKV 473

Query: 470 TLNQY 474
               Y
Sbjct: 474 NEQIY 478


>gi|221197023|ref|ZP_03570070.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD2M]
 gi|221203696|ref|ZP_03576714.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD2]
 gi|221175862|gb|EEE08291.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD2]
 gi|221183577|gb|EEE15977.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Burkholderia
           multivorans CGD2M]
          Length = 476

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/466 (32%), Positives = 229/466 (49%), Gaps = 20/466 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V  R DLR++D+ AL AAC   DA V+ V++ TP++       A    +++ SL 
Sbjct: 1   MSVAIVLFRRDLRLSDHPALSAACARHDA-VLPVYVHTPDEDAIWSPGAASRWWLHHSLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L Q+G      Q    +D    + +         +++ R+YE   +  D  L+  
Sbjct: 60  SLDRALRQQGGRLLVMQ----NDPTIAVPALARAVGAQCVYWTRRYEPAAIACDAALKSA 115

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   V  +S+  ++   P  +   + Q Y+V+TPF + L  +L        P+PA R  
Sbjct: 116 LRAQGVAAQSYPGTLWQEPWKVATDSGQPYRVFTPFWRKLRTSLSDCH----PLPAARPR 171

Query: 186 GPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             +T  +                  +   +  GE  A   L +F  E +  Y + RD PA
Sbjct: 172 RWMTTDDSTAVEAIGLLPRVRWDAGLAEAWRPGEAGAWERLAEFVDEALAEYGDARDAPA 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
             GTS+LS +L  G ++P Q    L+E       + +     +L EL WREF  HL+  +
Sbjct: 232 RMGTSRLSAHLHYGEITPTQILRTLQERASRTTDRDRPDLEPFLRELGWREFAHHLLYHF 291

Query: 299 PSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           P       F    +   W   D+  L  W+QG TG P++DA MRQL   GWMHNR+RM+ 
Sbjct: 292 PHTTDAN-FDARFDTFAWAPDDNDDLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVV 350

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K+L   WR G  +F   L+D DLA+N  GWQW A  G D+ PYFR+FNP +Q  +
Sbjct: 351 ASFLTKNLRRHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAK 410

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           FDP   +++ WLPEL+ +P   +H P         +  YP  +VD 
Sbjct: 411 FDPDAAYLKRWLPELSALPANVLHQPWKHPAALS-ACGYPASMVDL 455


>gi|237813094|ref|YP_002897545.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
           MSHR346]
 gi|237504878|gb|ACQ97196.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
           MSHR346]
          Length = 486

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/494 (31%), Positives = 240/494 (48%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERVGGRPLGGAARWW- 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    ++L                D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174

Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230
                  P   +      D    +   P +  G        E  A   LR F   ++  Y
Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+EL WREF
Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P +            L   YPLPIV H 
Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 473 AARRRALDAFGAIR 486


>gi|116071567|ref|ZP_01468835.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
 gi|116065190|gb|EAU70948.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
          Length = 477

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/485 (34%), Positives = 231/485 (47%), Gaps = 22/485 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFI 61
           A S  L W R DLR+ DN  + AA   S A V  V++  P           ++  +  F+
Sbjct: 2   AASRVLFWHRRDLRLADNLGIQAAVEISPA-VTGVYVLDPALIHPPQALPPMAPARLWFL 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL+++Q+     G      +     D ++ L     +     + +NR  E     RD+
Sbjct: 61  LESLIELQQRWRAAGSRLLILEG----DPVQMLPPLAERLSAEAVVWNRDVEPYSRERDR 116

Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            + KRLQ          D +L+ P  +   A   Y+VY PF +     +      ++  P
Sbjct: 117 QVAKRLQADGRQVVVDWDQLLIAPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPTTIEAP 176

Query: 181 A--IRLTGPVTPSNIPRF---FDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQR 234
           +  + L   + P   P      D+ FQ  +      GE  AL  L  F    +  Y   R
Sbjct: 177 SGLVDLDSSLVPEGDPLAALRHDHGFQGTEICPCRPGESAALEQLTCFADGALSAYEPDR 236

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-WLNELIWREFYRH 293
           + P + GTS LS  LS+G LSPRQ W   ++         +  A + W  EL WREFY+ 
Sbjct: 237 NFPNVVGTSYLSAALSVGTLSPRQAWCAAQQGRDHARSDEQRTAIAVWEQELGWREFYQQ 296

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +  +P +  G P+     +  W  +     +W+ G TG PIIDAAMRQLN  GWMHNR 
Sbjct: 297 ALFHFPELADG-PYREQWRRFPWENNEAWFSSWRDGMTGMPIIDAAMRQLNESGWMHNRC 355

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D  P  RIFNP  
Sbjct: 356 RMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDPKP-LRIFNPAT 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q  +FD  G +IR WLPEL +V T+ +        +      YP P+++HK       + 
Sbjct: 415 QATKFDADGDYIRRWLPELRHVNTKDLLTGEIGGLERR---GYPEPLINHKNQQALFKSL 471

Query: 474 YYAAK 478
           Y   +
Sbjct: 472 YATIR 476


>gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1-like [Sus scrofa]
          Length = 588

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|312903342|ref|ZP_07762522.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635]
 gi|310633218|gb|EFQ16501.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635]
 gi|315577672|gb|EFU89863.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0630]
          Length = 477

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNIMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis]
          Length = 618

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/501 (25%), Positives = 204/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       + ++TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LASEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITA 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T PV   +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVMEKCTTPVLDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R           T+ LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCIIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus]
 gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus]
          Length = 587

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus]
 gi|82104700|sp|Q8QG61|CRY1_CHICK RecName: Full=Cryptochrome-1
 gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus]
          Length = 621

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/498 (24%), Positives = 201/498 (40%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  + KL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLRSL-PVPA 181
                 +         L     I+  +  Q    Y  F+  + +   ++  + ++ P   
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175

Query: 182 IRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            + T PV+  +  +       +  F        ++P GE  AL  L +  + K +    +
Sbjct: 176 QKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|7267534|emb|CAB78016.1| Arabidopsis thaliana flavin-type blue-light photoreceptor
           (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226,
           N=1)
          Length = 716

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L   
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAAKKQS 481
           +Q +  +  S
Sbjct: 489 SQMWQLEAAS 498


>gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula]
          Length = 587

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/498 (24%), Positives = 199/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  + KL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLRSL-PVPA 181
                 +         L     I+  +  Q    Y  F+  + +   ++  + ++ P   
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175

Query: 182 IRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            + T PV   +  +       +  F        ++P GE  AL  L +  + K      +
Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKASVANFE 235

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus]
          Length = 587

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +T+L      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITRLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LASEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T PV+  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 DVIEKCTTPVSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGQTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|307278038|ref|ZP_07559122.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860]
 gi|306505435|gb|EFM74621.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860]
          Length = 477

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/478 (34%), Positives = 242/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|217421243|ref|ZP_03452748.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576]
 gi|217396655|gb|EEC36672.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576]
          Length = 486

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/494 (31%), Positives = 240/494 (48%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    ++L                D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  R I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 115 NAVQTALDARGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174

Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230
                  P   +      D    +   P +  G        E  A   LR F   ++  Y
Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+EL WREF
Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P +            L   YPLPIV H 
Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 473 AARRRALDAFGAIR 486


>gi|326403807|ref|YP_004283889.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
 gi|325050669|dbj|BAJ81007.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
          Length = 471

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/490 (31%), Positives = 224/490 (45%), Gaps = 35/490 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+WLRNDLR+ DN AL AA    +  V+ VF+  P              +++ SL 
Sbjct: 1   MATTLLWLRNDLRLADNPALAAAIEEGN--VLPVFVLDPAAE----TGGASRWWLHHSLA 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++   + +G      +     D+   + +   +     +   R +E      D+ +   
Sbjct: 55  ALEADFAARGGRLVLRRG----DAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAA 110

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ   I       +++  P  I      +Y VYTPF +A                A    
Sbjct: 111 LQEAGIGFHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIP----APARL 166

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIP 237
                    R  D+    + P +  G        E  A   L  F  +    Y  QRD+P
Sbjct: 167 AAAGDPGGDRLGDWGLLPVKPDWAGGLRASWTPGEAGARARLDAFLADGFGEYDRQRDLP 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            + GTS LSP+L  G ++    W               +   ++L ELIWREF  +L+  
Sbjct: 227 GVAGTSGLSPHLHWGEIAIDAVWRAAVAA-----PGRDAARQTFLKELIWREFAAYLLWH 281

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +   +P       + W + +  L AW+ G TG PI+DA MRQL   GWMHNR+RMI 
Sbjct: 282 TPDLAT-RPMKAQFAAMPWRESAADLAAWQHGRTGVPIVDAGMRQLWQTGWMHNRVRMIV 340

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVK LL+ W+ GE +F   L+D D ASN   WQW A +G D+ PYFRIFNP +QG++
Sbjct: 341 ASFLVKHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRK 400

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTL 471
           FDP G ++R ++PE+ N+P +Y+HAP    +         L  +YP PIVD  +     L
Sbjct: 401 FDPDGAYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPIVDLAEGRERAL 460

Query: 472 NQYYAAKKQS 481
             + A   ++
Sbjct: 461 AAFAAISGKA 470


>gi|118572249|sp|Q5IZC5|CRY1_ERIRU RecName: Full=Cryptochrome-1
 gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula]
          Length = 620

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/498 (24%), Positives = 199/498 (39%), Gaps = 32/498 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  + KL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLRSL-PVPA 181
                 +         L     I+  +  Q    Y  F+  + +   ++  + ++ P   
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175

Query: 182 IRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            + T PV   +  +       +  F        ++P GE  AL  L +  + K      +
Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKASVANFE 235

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+WRE
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+
Sbjct: 413 YCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKPMVN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +A    + +     +Q
Sbjct: 473 HAEASRLNIERMKQIYQQ 490


>gi|53719958|ref|YP_108944.1| putative DNA photolyase [Burkholderia pseudomallei K96243]
 gi|126453768|ref|YP_001066985.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a]
 gi|134277838|ref|ZP_01764553.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305]
 gi|226200012|ref|ZP_03795562.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
           Pakistan 9]
 gi|242315962|ref|ZP_04814978.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b]
 gi|254195952|ref|ZP_04902378.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13]
 gi|254296960|ref|ZP_04964413.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e]
 gi|52210372|emb|CAH36352.1| putative DNA photolyase [Burkholderia pseudomallei K96243]
 gi|126227410|gb|ABN90950.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a]
 gi|134251488|gb|EBA51567.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305]
 gi|157807746|gb|EDO84916.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e]
 gi|169652697|gb|EDS85390.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13]
 gi|225928068|gb|EEH24105.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
           Pakistan 9]
 gi|242139201|gb|EES25603.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b]
          Length = 486

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/494 (31%), Positives = 240/494 (48%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    ++L                D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174

Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230
                  P   +      D    +   P +  G        E  A   LR F   ++  Y
Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+EL WREF
Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P +            L   YPLPIV H 
Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 473 AARRRALDAFGAIR 486


>gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus]
          Length = 586

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|315169001|gb|EFU13018.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1341]
          Length = 477

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/478 (35%), Positives = 243/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDICGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L      L  +      ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQELASASSSLSKE------TFKKELAWRDFYNMIYSTFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|15790367|ref|NP_280191.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
 gi|10580849|gb|AAG19671.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
          Length = 489

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 161/493 (32%), Positives = 231/493 (46%), Gaps = 22/493 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHG 52
           M A     + L W R DLR TDN+ L AA          +    V AVF    E      
Sbjct: 1   MPAAQPPGMQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLA--H 58

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
            +  +  F+  +L  +++     G            D    L +       T++ +N  Y
Sbjct: 59  AAPPRVAFMLDALAALRERYRDLGSDLIVRHG----DPAAVLPAVANDLDATRVVWNHDY 114

Query: 113 EINEVRRDKLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV- 170
                 RD  +   L    +    F D+V   PG I  +A   Y VYT F +        
Sbjct: 115 SGLATDRDAGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKN 174

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCK-EKVY 228
                  P      T     S +P   +  F   +   P  G   A  +L  F +   +Y
Sbjct: 175 PPAPEPEPADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDIY 234

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIW 287
            Y ++RD P  + TS+LSP+L  G +  R  +   +    D     +     +++ +L W
Sbjct: 235 RYEDRRDYPHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAW 294

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REFY  ++ F  +V + + F  +   IEW  D   LQAWK G TG+PI+DA MRQL    
Sbjct: 295 REFYAQVLYFNQNV-VSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEA 353

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHNR+RMI A+FL KDLLVDWR G ++F  +L D D A++NGGWQWAASTG D+ PYFR
Sbjct: 354 YMHNRVRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFR 413

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKK 465
           +FNP  QG+R+DP   +I  ++PEL +VP   IH+ H  S  ++   +  YP PIVDH +
Sbjct: 414 VFNPMTQGERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHSQ 473

Query: 466 ACHHTLNQYYAAK 478
                +  +  A+
Sbjct: 474 RREDAIAMFERAR 486


>gi|126735833|ref|ZP_01751578.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
 gi|126715020|gb|EBA11886.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
          Length = 472

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/482 (32%), Positives = 230/482 (47%), Gaps = 27/482 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + S  L+W R DLR+ D++AL AAC ++D  VI VFI          + A     +  S+
Sbjct: 2   SKSPILMWFRRDLRLGDHEALTAAC-DADRPVIPVFIYD---ELTESMGAAPKMRLGLSV 57

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL++KG      +      +++ L           ++++R Y+ +   RD  ++ 
Sbjct: 58  ADLAASLNEKGSKLILRRGK----ALDVLRELIKDTGADTVYWSRLYDPDGKTRDTDVKA 113

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   I  +SF   VL  P ++       YKVYTP  K++  N V A L +     +  
Sbjct: 114 ALKDDGITAESFKGHVLFEPWTVETKIGGFYKVYTPMWKSVRGNDVPAALPTPGTIPVPD 173

Query: 185 TGP----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           + P    +    +          +     +GE  A H L  F    V  YV+ RD+PA+ 
Sbjct: 174 SWPKSDDIADWQMDAAMHRGADTLKSHCTVGEAAASHRLGAFIANHVANYVKNRDLPAVD 233

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LS  L+ G +SPR+CW+   +   D     K  A ++L EL+WREF  HL    P 
Sbjct: 234 GTSGLSENLTYGEISPRKCWHSGWQALND----GKGDAETFLKELVWREFAYHLAYHTPR 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +     +    +   WN D  L  ++AWKQG TG   +DAAMR++   G MHNR RMI A
Sbjct: 290 ITTDN-WKEDWDAFPWNTDERLAEVKAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMIVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S+L K LL  W+IG  +F   L+D D  SN  GWQW+A +G D+ PYFR+FNP  Q  +F
Sbjct: 349 SYLTKHLLCHWKIGMNWFADCLIDWDPCSNAMGWQWSAGSGPDATPYFRVFNPVTQLDKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           D    +I+ W+ E    P+      Y   P SW      S  YP PIV         L+ 
Sbjct: 409 DKDRAYIKKWIAEGTKRPSATALSYYDMIPESWGMTAQDS--YPDPIVPADVGRSRALDA 466

Query: 474 YY 475
           Y 
Sbjct: 467 YQ 468


>gi|158424448|ref|YP_001525740.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571]
 gi|158331337|dbj|BAF88822.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571]
          Length = 484

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/487 (30%), Positives = 235/487 (48%), Gaps = 20/487 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +A    ++W R+DLR+ DN A  AA   S  +V+A+++   +      +      ++  S
Sbjct: 2   SAAGTAVIWFRDDLRLADNPA-LAAAAASGRRVLALYVLDEDSPGVRALGGAALWWLAGS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  ++  L Q G+     +     ++   +           + +N +    E   D+ + 
Sbjct: 61  LRALKAELGQHGVPLVLRRG----EAGRIVPDVARAAGADLVAFNWRAGKAEQAVDEAVA 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    V  +     +L  PGS+      + + ++ F +A ++   +   R+LPVP + 
Sbjct: 117 RHLSAAGVTVERTLGHLLHAPGSVRGTGGGLPRTFSSFMRAAVKG--RDIGRTLPVPRLN 174

Query: 184 LTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              P+   ++  +   P Q      +   +  GE  A   L  F  + +  Y E RD P 
Sbjct: 175 GAAPLPCDDLEEWALEPTQPDWAGGLRTTWHPGEAAARARLEAFLADGLAGYGEGRDRPD 234

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S+LSPYL  G +SPRQ          D    P      +  EL WREF  HL+   
Sbjct: 235 QTHVSRLSPYLRFGEISPRQV-LLAALAAGDAGTVPAKDVQKFEAELYWREFSHHLLFAV 293

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +   +      +   W +    L+ W++G TG+PI+DA MRQL   GWMHNR+RMI A
Sbjct: 294 PDLAR-RNLQASFDAFPWRECPGDLKKWQKGRTGYPIVDAGMRQLWQTGWMHNRVRMIVA 352

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+ W+ GE +F   L+D DLA+N   WQW A +G D+ PYFRIFNP +QG++F
Sbjct: 353 SFLCKHLLLPWQDGELWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQGEKF 412

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQ 473
           DP+GT++R ++PEL +VP + IH P S   +       L  +YP P+V+H  A    L  
Sbjct: 413 DPEGTYVRTYVPELKDVPARLIHQPWSAPLELTRYGVRLGRDYPEPMVEHGAARDRALRA 472

Query: 474 YYAAKKQ 480
           +   +K 
Sbjct: 473 FEHTRKD 479


>gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1-like [Pongo abelii]
          Length = 586

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDASLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|113197027|gb|ABI31780.1| cryptochrome 1 protein [Brassica rapa]
          Length = 704

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/523 (27%), Positives = 231/523 (44%), Gaps = 49/523 (9%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
             +      +VW R DLR+ DN AL AA       VIAVF+  PE+   +        ++
Sbjct: 4   SCSGGGGCSIVWFRRDLRVEDNPALAAAVRAG--PVIAVFVWAPEEEGHYQPGRVSRWWL 61

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL Q+  SL   G      + +   DS+  L         +++F+N  Y+   + RD 
Sbjct: 62  KNSLAQLDSSLRSLGTCLITKRST---DSVASLLEVVKSTGASQIFFNHLYDPLSLVRDH 118

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             +  L    +  KSF+  +L  P  + +   + + ++  F +  +      +   LP  
Sbjct: 119 RAKDALTAEGIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPK 178

Query: 181 AIR-----------------------LTGPVTPSNIPRF--FDYPFQAIDPM----FPIG 211
            I                        L G V+          D   +  + +    +  G
Sbjct: 179 KIISGLLLHHTLSEIVSYPLLITLFVLAGDVSKCVADTLIFEDESEKGSNALLARAWSPG 238

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
             NA   L  F    +  Y + R       TS LSP+L  G +S R+ ++ L+ + V   
Sbjct: 239 WSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLLRIKQVAWA 298

Query: 272 IKPKSGAFS----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
            +           +L  +  RE+ R++   +P     +P +   +   W  D +  +AW+
Sbjct: 299 NEGNQAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAWR 357

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S
Sbjct: 358 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 417

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           +  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT++IH P +  
Sbjct: 418 DALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAP 477

Query: 448 DKN------DLSLNYPLPIVDHKKACHH---TLNQYYAAKKQS 481
           +        +L  NYP PIV   +A       L+Q +  +  S
Sbjct: 478 ESVLQAAGIELGSNYPRPIVGLDEAKARLHEALSQMWQLEAAS 520


>gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries]
 gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries]
          Length = 587

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/502 (25%), Positives = 203/502 (40%), Gaps = 40/502 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI- 182
              +  V         L      L+  +++     P      Q L+ + +   +PV  I 
Sbjct: 116 LATEAGVEVIIRISHTLYD----LDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETIT 171

Query: 183 -----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYY 229
                + T P++  +  +       +  F        ++P GE  AL  L +  + K + 
Sbjct: 172 SEVMEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWV 231

Query: 230 YVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L
Sbjct: 232 ANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQL 290

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL  
Sbjct: 291 LWREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQ 349

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    
Sbjct: 350 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQ 408

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPL 458
           +F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP 
Sbjct: 409 FFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPK 468

Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480
           P+V+H +A    + +     +Q
Sbjct: 469 PMVNHAEASRLNIERMKQIYQQ 490


>gi|326493172|dbj|BAJ85047.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326496489|dbj|BAJ94706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 656

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/491 (25%), Positives = 217/491 (44%), Gaps = 29/491 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN     A    D  V+ VFI  P +  +         ++  SL  + 
Sbjct: 7   TVVWFRKDLRIDDNP--ALAAAARDGAVLPVFIWCPAEEGRFYPGRCSRWWLKESLAHLA 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE-KRLQ 128
           KSL   G      +      +++ L       R T++ YN  Y+   + RD  ++ + L 
Sbjct: 65  KSLEALGCPLVLIRAQT---TLDALLQCVHSIRATRVVYNHLYDPISLVRDDKIKNELLG 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  I +     +  +  + +  ++  ++      P   + ++G  
Sbjct: 122 LGISMQSFNGDLLYEPWEIYDENGLAFTTFNMYWEKCMELPIEISPSLAPWRLVPVSGIE 181

Query: 189 TPS---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                          +  +     +   +  G +NA   L  F    +  Y +     A 
Sbjct: 182 NLCTSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVCHGLLDYSKDGMKVAG 241

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLM 295
             TS LSPYL  G +S R+ +  ++ + +    +  S A      +L  +  RE+ R+L 
Sbjct: 242 TTTSLLSPYLHYGEVSVRKIYQLVRMQQIKCGNEGNSEAGESVNLFLRSIGLREYSRYLC 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+
Sbjct: 302 FNFP-FTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I +SF VK LL+ W  G +YF   LLD D+ S+  GWQ+ +    D     R+ NP +QG
Sbjct: 361 IVSSFAVKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQG 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH- 468
           +++DP G ++R W+PEL  +P ++IH P             +L  NYP+PIV+   A   
Sbjct: 421 QKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHMAREC 480

Query: 469 --HTLNQYYAA 477
               ++  +  
Sbjct: 481 LDDAISTMWQL 491


>gi|219888079|gb|ACL54414.1| unknown [Zea mays]
          Length = 688

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 142/490 (28%), Positives = 229/490 (46%), Gaps = 23/490 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN A  AA   +  +V+  ++ +PE+   +        +I  SL  +  
Sbjct: 4   VVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLNHLDA 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129
           SL + G      + S   D+   L         T +++N  Y+   + RD+ L++ L   
Sbjct: 63  SLRRLGAGKLVTRRSA--DAAVALLQLVRDTGATHVYFNHLYDPISLVRDRRLKEMLAAE 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-PV 188
            ++ +SF+  +L  P  +++   Q + ++ PF    +          LP   I      +
Sbjct: 121 GIVVQSFNSDLLYEPWEVVDDEGQPFTMFDPFWNRCLSMPYDPPAPLLPPKRINSGDLSM 180

Query: 189 TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PS    F D   +  + +    +  G QNA   L  F    +  Y   R       TS 
Sbjct: 181 CPSEDLIFEDESERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSASTSL 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300
           LSP+L  G LS R+ ++ ++ + +    +    A      +L  +  RE+ R+L   +PS
Sbjct: 241 LSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNHPS 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R++ ASF
Sbjct: 301 -SHERPLLAHLRFFPWVVDESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVASF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   +  D     RI NP  +G +FDP
Sbjct: 360 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDGRELDRIDNPQFEGYKFDP 419

Query: 421 QGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSL--NYPLPIVDHKKAC---HHTL 471
            G ++R W+PEL  +PT++IH P     S L    + L  NYPLPIV+   A       L
Sbjct: 420 HGEYVRRWIPELARLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKGRLQAAL 479

Query: 472 NQYYAAKKQS 481
           ++ +  +  S
Sbjct: 480 SEMWQLEAAS 489


>gi|307153163|ref|YP_003888547.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
 gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
          Length = 495

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 137/497 (27%), Positives = 235/497 (47%), Gaps = 37/497 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLR+ D++ L  A     A++I  +     Q+R+           ++ F+  SL
Sbjct: 7   LIWYRNDLRLHDHEPLNKALKE-KAEIIPFYCFDERQFRKTSYGFPKTGNFRAQFLLESL 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++KSL ++G      +        + +     + ++T ++Y+++    E+  +K LE 
Sbjct: 66  ADLKKSLQERGSDLIIRKGLPE----KIIPQLAQELKLTAVYYHQEVTAEELAVEKALES 121

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L   RV  +SF  + L  P ++      + +++T FRK + +      +   P    + 
Sbjct: 122 GLNKIRVKTESFWGATLYHPDNLPFKIAHIPELFTNFRKKVEKASTVDPILPTP----KS 177

Query: 185 TGPVTPSNIPRFFDYPFQAIDP---------MFPIGEQNALHILRKFCKEKV--YYYVEQ 233
             P+    I    D     ++           F  GE  AL  L ++  +K     Y E 
Sbjct: 178 LSPLPAIEIGTLPDLAALGLETPIFDQRGVLKFRGGETAALERLEEYFWQKNCLKSYKET 237

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +S+ SP+L+ G +SPR  +  +++     +       +  + EL+WR+++R
Sbjct: 238 RNGMLGGDYSSKFSPWLASGCISPRYIYEAVQKYEQQRV--KNDSTYWLIFELLWRDYFR 295

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            + A + +       +   + + W +D    Q W++G TG+P++DA MR+L   G+M NR
Sbjct: 296 FICAKHGNKIFYPSGLQGLD-LPWKEDWQRFQLWQEGKTGYPLVDANMRELAATGFMSNR 354

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR FN  
Sbjct: 355 GRQNVASFLTKNLGLNWIMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIP 413

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
            Q K +DP G ++RHWLPEL  VP   IH P     +        L ++YP P+VD  K+
Sbjct: 414 KQSKDYDPLGEYLRHWLPELAAVPGDKIHEPWKLSSEEQKRYQVRLGVDYPQPVVDFFKS 473

Query: 467 CHHTLNQYYAAKKQSLL 483
                  Y   +K + L
Sbjct: 474 IKTNEAIYSTREKGTRL 490


>gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta]
          Length = 586

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|304571316|dbj|BAJ15776.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 137/491 (27%), Positives = 229/491 (46%), Gaps = 25/491 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+ 
Sbjct: 2   SIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 59

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  
Sbjct: 60  SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-P 187
             +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I     P
Sbjct: 117 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVP 176

Query: 188 VTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              S+   F D   +  + +    +  G  NA   L  F    +  Y + R       TS
Sbjct: 177 KCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299
            LSP+   G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +P
Sbjct: 237 FLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHP 296

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 297 -YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 355

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FD
Sbjct: 356 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 415

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---T 470
           P G ++R WLPEL+ +PT++IH P +  +        +L  NYP P++   +A       
Sbjct: 416 PNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEA 475

Query: 471 LNQYYAAKKQS 481
           L+Q +  +  S
Sbjct: 476 LSQMWQLEAAS 486


>gi|81864807|sp|Q70AD6|CRY1_SPAJD RecName: Full=Cryptochrome-1
 gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei]
          Length = 587

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/501 (24%), Positives = 202/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLLVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + + +  
Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERRAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLV-KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL   DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|260753965|ref|YP_003226858.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258553328|gb|ACV76274.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 469

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/480 (31%), Positives = 245/480 (51%), Gaps = 28/480 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R+D R+ DN A+ AA  + +  VI  +I      +    +     ++  SLL + +
Sbjct: 8   LIWFRHDFRLRDNAAITAAIQSRN-PVICFYIQESADAKTENAAD---WWVAESLLALNR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L +KG      +     D+ + +     Q    KLF+NR+Y+      D++L+K ++  
Sbjct: 64  QLKEKGGQLHLFEG----DAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRAM 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF +++L  P ++ N   Q +++++ + +A+ +++    +   P   +  T  + 
Sbjct: 120 GLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRHMNIQAVLPCPENWVFSTREIR 179

Query: 190 PSNIPRFFD-YPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                +       +  D  + I        GE  A   L+ F +  + +Y ++RD PA  
Sbjct: 180 HCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHERLKSFIENDLAHYAKERDFPAKD 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LS +L  G +S +Q W+ + +           G   +L EL WREF   ++  +P 
Sbjct: 240 GTSLLSAFLRSGQISSKQIWHEVTK------NGSGEGTSKFLAELGWREFAWSVLWEHPD 293

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +   +   P  +K+ W K S  LQ WK+G TG+P IDA MR L   G+M NRLRM+TASF
Sbjct: 294 LN-QRNLRPEFDKMPWEKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLRMVTASF 352

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+DWR GE++F   L+D D A N   WQW A +G +S PYFRI NP +Q ++FDP
Sbjct: 353 LVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQSQKFDP 412

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            G +IR W+ EL +V T +IH P      +    NYPLPI+ H++     L  +   +  
Sbjct: 413 DGQYIREWVKELADVSTAFIHTPWK---ADKQPANYPLPIIAHEEGRDRALRAWKEIRHA 469


>gi|255975817|ref|ZP_05426403.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2]
 gi|255968689|gb|EET99311.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2]
          Length = 473

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/477 (35%), Positives = 241/477 (50%), Gaps = 24/477 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   ++
Sbjct: 1   MWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFKE 57

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            + Q     + H      + ++       +      +++N        +RD+   +  + 
Sbjct: 58  RIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFEE 112

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  +
Sbjct: 113 NNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSACL 172

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS +
Sbjct: 173 FPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLRSYENKRDFPYQDQTSHLSTF 232

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +   
Sbjct: 233 LRTGELSIRTIWQEL------ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAIQ 285

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +D
Sbjct: 286 EKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHID 345

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ +
Sbjct: 346 WRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKY 405

Query: 429 LPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 406 VPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 462


>gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes]
          Length = 586

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|315172271|gb|EFU16288.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1346]
          Length = 477

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 166/478 (34%), Positives = 241/478 (50%), Gaps = 24/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKA   A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKAFAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLKHYSVGEKTARRCLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R  W  L        +       ++  EL WR+FY  + + +P     +  
Sbjct: 236 FLRTGELSIRTIWQEL------ASVPSSLSKETFKKELAWRDFYNMIYSTFPQQ-KEEAI 288

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I+W  D  +   W++G TG+PIIDAAMRQLN  GWMHNRLRMITASFLVK+L +
Sbjct: 289 QEKFRYIQWTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVKNLHI 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ 
Sbjct: 349 DWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKK 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           ++PEL  VP +YIH P+   +         L  NYP PIVD+  +   TL  Y A+K+
Sbjct: 409 YVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKKQTLFLYEASKE 466


>gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis]
          Length = 605

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/494 (25%), Positives = 200/494 (40%), Gaps = 37/494 (7%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L  +  +L
Sbjct: 1   WFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANL 59

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
            +        +        +       + ++TKL      E     RD  ++K      +
Sbjct: 60  RKLNSRLFVIRG----QPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKKLASEAGV 115

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI------RLT 185
                 S  L     L+  +++     P      Q L+ + +   +PV  I      + T
Sbjct: 116 EVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVMEKCT 172

Query: 186 GPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            PV   +  +       +  F        ++P GE  AL  L +  + K +    +R   
Sbjct: 173 TPVLDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVANFERPRM 232

Query: 238 AIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                   T+ LSPYL  G LS R  + +L + +  +  K  S   S   +L+WREF+  
Sbjct: 233 NANSLLASTTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWREFFYT 291

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 292 AATNNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 350

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 351 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 409

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P+V+H +A
Sbjct: 410 GFGRRTDPNGDYIRRYLPILKGFPPKYIYDPWNAPETVQKVAKCIIGVNYPKPMVNHAEA 469

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 470 SRLNIERMKQIYQQ 483


>gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens]
 gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys]
 gi|74735764|sp|Q16526|CRY1_HUMAN RecName: Full=Cryptochrome-1
 gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens]
 gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens]
 gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens]
 gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
 gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
 gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens]
 gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens]
 gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct]
 gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct]
          Length = 586

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|84502965|ref|ZP_01001067.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
 gi|84388710|gb|EAQ01581.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
          Length = 472

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/484 (31%), Positives = 230/484 (47%), Gaps = 34/484 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+W R DLR++D+ AL  A       VI VFI         G+ A     +   L   
Sbjct: 7   PTLLWFRRDLRLSDHPALTQAAARG--PVIPVFIHDDSVA---GLGAAPKWRLGEGLAVF 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +L+++G      +        E L+    +   T +++ R Y+ + + RD  ++  L 
Sbjct: 62  RDALAERGARLILRRGPAR----EVLERLIDETGATAVYWTRAYDPDAIERDSRVKAALA 117

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R     SF   ++  P  +     +MY+VY+P+ +A+    V   LR     A  L+ P
Sbjct: 118 DRGTEACSFPGHLIFEPWEVETQQGKMYQVYSPYWRAVKDREVDRPLR-----APDLSAP 172

Query: 188 VTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               +     D+            +      GE  A   L  F  +++  Y E+RD+PA 
Sbjct: 173 SKWPDSEALEDWHLGAGMNRGAAIVARHCTPGEGAAQSRLGAFSAQRLEDYKERRDMPAE 232

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS +S YL++G +SPRQ W+       +     KSGA  +  E++WREF  HLM   P
Sbjct: 233 DATSDMSQYLTLGEISPRQLWHAALRGEAE----GKSGAEHFRKEVVWREFAYHLMYHTP 288

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +        W       +DS  ++ WKQG TG   +DAAMR++   G MHNR RM+ AS
Sbjct: 289 RLLDENWREGWEAFCWSEEDSEAVRRWKQGRTGVRFVDAAMREMYVTGRMHNRSRMVVAS 348

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           +L K +LV WRIG+++F   L+D D ASN+ GWQW A  G D+ PYFR+FNP  Q ++FD
Sbjct: 349 YLTKHMLVHWRIGQKWFQDCLIDWDPASNSMGWQWVAGCGPDASPYFRVFNPDTQLEKFD 408

Query: 420 PQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
             G ++  WL E +  P+     Y  A P SW    +   +YP P+VD K+     L  Y
Sbjct: 409 RDGRYVARWLAECSRSPSDTALSYFDAIPESWGLSPE--DDYPEPVVDLKEGRRRALAAY 466

Query: 475 YAAK 478
              K
Sbjct: 467 EDIK 470


>gi|296775719|gb|ADH42995.1| Deoxyribodipyrimidine photolyase [uncultured SAR11 cluster alpha
           proteobacterium H17925_38M03]
          Length = 466

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/479 (32%), Positives = 247/479 (51%), Gaps = 23/479 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
             + L WLR+D R   N  L  A    + +V+  ++     +        Q  ++  SL 
Sbjct: 3   KKIGLFWLRDDFRFVKNHGLIEATTKHN-QVVVFYLYKKNIYNDQ---EAQKWWLSKSLS 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
             +K L++  IV +  + ++F    + L    ++++   +++N+ YE + ++ D+ L   
Sbjct: 59  NFKKKLNELNIVLEIVETNSFKIFFDAL----IKKKDFXIYWNKVYEPDYLKFDEYLLNI 114

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------RSLPV 179
            ++  I  K F  + L     I       +KV+TPF +   +   +         +    
Sbjct: 115 FKNNNIYXKRFKGNALNEINEIKKGDGTPFKVFTPFWRTAEKFFSEKIPSKERVIKKCKN 174

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                   ++   I    D+ F+  + ++   EQ+A   L+KF KE++  Y E R+ P+I
Sbjct: 175 KTNFFKNSISVEKILPEKDW-FKNFEKIWLPDEQHAFKELQKFIKERIVNYSEGRNFPSI 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GTS+LSP++  G L     WN   ++        K G   +L E+ WREF   L+  +P
Sbjct: 234 KGTSKLSPFIKFGQLHVETIWNECIKKKPK-----KIGTSKFLTEIGWREFNHSLINHFP 288

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +     +    +K  W K+S  L  WK+G TG+PI+DA MR+L + GWMHNR+RMI  S
Sbjct: 289 HMLKSN-YSKKFDKFPWEKNSKFLDKWKKGMTGYPIVDAGMRELYSTGWMHNRVRMIVGS 347

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK LL+DW+ GE+YF + LLD   ASN  GWQW A  G D+ PYFRIFNP +QG++FD
Sbjct: 348 FLVKHLLIDWKYGEKYFKNCLLDYSPASNVSGWQWVAGCGADAAPYFRIFNPILQGEKFD 407

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             G +++ W+PEL N+  ++IH P  +  +K  L  +YP PIV H++A    LN +   
Sbjct: 408 KDGEYVKKWVPELKNLSKKFIHKPWEFNNEKFKLGRDYPYPIVKHEEAREKALNAFKKI 466


>gi|302814412|ref|XP_002988890.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii]
 gi|300143461|gb|EFJ10152.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii]
          Length = 489

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 134/491 (27%), Positives = 219/491 (44%), Gaps = 24/491 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW R DLR+ DN AL AA     + V+ VF+  PE+  Q         ++  SL+Q+
Sbjct: 3   TILVWFRRDLRLDDNPALAAAVARKGSIVVPVFVWCPEEEGQFQPGRVSRWWLKQSLIQL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL + G      + +    +++ L         +++FYN  Y+   + RD  +++ L 
Sbjct: 63  SSSLERLGAPLLVRRTA---GTLDALLQIAHDTGASQVFYNHLYDPVSLIRDHRVKQGLA 119

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            H +  K+F   +L  P  I +   Q++  +  F    +           P   + L G 
Sbjct: 120 DHGISVKTFRGDLLYEPWEIYDDQGQVFTTFQAFWSKSLSMRDPEAPLLPPRQLLSLPGY 179

Query: 188 VTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           +  S          +A       +   +  G          F    +  Y  +R      
Sbjct: 180 LCQSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFLSGPILQYSIRRKQIDSV 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            TSQLSP+L  G +S R+ +  ++ ++F             +L  L  RE+ R+L   +P
Sbjct: 240 TTSQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDVESMNMFLRALGLREYSRYLSFNFP 299

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +  +   +   W  D    ++W+QG TG+P++DA MRQL   GW+H ++R++ +S
Sbjct: 300 -FTHKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATGWLHCKIRVVVSS 358

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK L V W  G +YF   LLD D+ ++  GWQ+ +    D     R  NP ++G + D
Sbjct: 359 FLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRWENPQVKGYKLD 418

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA---CHHT 470
           P+G ++R WLPEL+ VP  +IH P             +L  NYP PIV+   A       
Sbjct: 419 PKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVEVAAAYYRQQQA 478

Query: 471 LNQYYAAKKQS 481
           L++ +  KK +
Sbjct: 479 LDEMW--KKSA 487


>gi|121997706|ref|YP_001002493.1| deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
 gi|121589111|gb|ABM61691.1| Deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
          Length = 477

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/484 (31%), Positives = 233/484 (48%), Gaps = 21/484 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVWLR DLR+ D  AL  A   ++ ++  V+I  P + R   + A    +++ SL 
Sbjct: 1   MTNALVWLRRDLRLADQPALARAAQTAE-RLAPVYIHAPAETRPT-VGAASCWWLHHSLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L+  G       C +   S E L  +        ++     E    +++  + + 
Sbjct: 59  ALDAELASAGSRL----CLDTGPSAERLCHWAQVSDAAVVYCTAIAEPWARQQEAAVAEA 114

Query: 127 LQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    V  +   D +L  P ++ N +   Y+ +TPF +++   L        P       
Sbjct: 115 LAAIGVRLEVLADGLLTDPSAVRNRSGTPYRAFTPFWRSVRAQLDPPRPAPPPALPGLPE 174

Query: 186 GPVTPSNIPRFFDYPF----QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
               P  +      P     + + P +  G   A   L +F       Y E+RD PA  G
Sbjct: 175 AIPEPQPLETLGLLPRIRWDEKLAPCWQPGAAGAQQRLERFLDGAGPAYGERRDFPAQPG 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G +S R  W+ +++    +         ++L EL WREF  HL+   P +
Sbjct: 235 TSRLSPHLHFGEISIRAVWHAVRDAQ-QMQPAAADALDTFLAELGWREFAYHLLWQQPEL 293

Query: 302 CMGKPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               P      +  W +D    LL AW++G TG P++DA MR+L   GWMHNR+RM+  S
Sbjct: 294 -HRTPIDERFSRFPWREDPDGALLDAWRRGATGIPLVDAGMRELWATGWMHNRVRMVVGS 352

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK+L + W+ GE +F   L+D DLASN+ GWQW +  G D+ PYFRIFNP  QG+RFD
Sbjct: 353 FLVKNLRLPWQHGEAHFRDTLVDWDLASNSMGWQWVSGCGADAAPYFRIFNPVRQGERFD 412

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473
           P G ++RHW+PE+  +P  +IH P +            L  +YP P+VD   +    L  
Sbjct: 413 PDGDYVRHWVPEVAGLPKSHIHQPWAAPADARARCGLHLGRDYPEPLVDLATSRKEALAA 472

Query: 474 YYAA 477
           ++A 
Sbjct: 473 FHAL 476


>gi|76808656|ref|YP_334184.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b]
 gi|254258748|ref|ZP_04949802.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a]
 gi|76578109|gb|ABA47584.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b]
 gi|254217437|gb|EET06821.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a]
          Length = 486

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/494 (31%), Positives = 240/494 (48%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    ++L                D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAPRAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174

Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230
                  P   +      D    +   P +  G        E  A   LR F   ++  Y
Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+EL WREF
Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P +            L   YPLPIV H 
Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 473 AARRRALDAFGAIR 486


>gi|148260613|ref|YP_001234740.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5]
 gi|146402294|gb|ABQ30821.1| deoxyribodipyrimidine photo-lyase type I [Acidiphilium cryptum
           JF-5]
          Length = 471

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/490 (31%), Positives = 225/490 (45%), Gaps = 35/490 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+WLRNDLR+ DN AL AA    +  V+ VF+  P              +++ SL 
Sbjct: 1   MATTLLWLRNDLRLADNPALAAAIEEGN--VLPVFVLDPAAE----TGGASRWWLHHSLA 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++   + +G      +     D+   + +   +     +   R +E      D+ +   
Sbjct: 55  ALEADFTARGGRLVLRRG----DAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAA 110

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ   I       +++  P  I      +Y VYTPF +A                A    
Sbjct: 111 LQEAGIGFHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIP----APARL 166

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIP 237
                    R  D+    + P +  G        E  A   L  F  +    Y  QRD+P
Sbjct: 167 AAAGDPGGDRLGDWGLLPVKPDWAGGLRASWTPGEAGARARLDAFLADGFGEYDRQRDLP 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            I GTS LSP+L  G ++    W               +   ++L ELIWREF  +L+  
Sbjct: 227 GIAGTSGLSPHLHWGEIAIDAVWRAAVAA-----PGRDAARQTFLKELIWREFAAYLLWH 281

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +   +P       + W + +  L AW++G TG PI+DA MRQL   GWMHNR+RMI 
Sbjct: 282 TPDLAT-RPMKAQFAAMPWRESAADLAAWQRGRTGVPIVDAGMRQLWQTGWMHNRVRMIV 340

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFLVK LL+ W+ GE +F   L+D D ASN   WQW A +G D+ PYFRIFNP +QG++
Sbjct: 341 ASFLVKHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRK 400

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTL 471
           FDP G ++R ++PE+ N+P +Y+HAP    +         L  +YP P+VD  +     L
Sbjct: 401 FDPDGAYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPVVDLAEGRERAL 460

Query: 472 NQYYAAKKQS 481
             + A   ++
Sbjct: 461 AAFAAISGKA 470


>gi|297813243|ref|XP_002874505.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320342|gb|EFH50764.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 690

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/491 (28%), Positives = 228/491 (46%), Gaps = 25/491 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+ 
Sbjct: 14  NIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 71

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  
Sbjct: 72  SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 128

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I      
Sbjct: 129 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVS 188

Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + P  F+   +      +   +  G  NA   L  F    +  Y + R       TS
Sbjct: 189 KCVSDPLVFEDDSERGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 248

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299
            LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +P
Sbjct: 249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP 308

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 309 -YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 367

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FD
Sbjct: 368 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 427

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---T 470
           P G ++R WLPEL+ +PT +IH P +  +        +L  NYP PIV   +A       
Sbjct: 428 PNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEA 487

Query: 471 LNQYYAAKKQS 481
           L+Q +  +  S
Sbjct: 488 LSQMWQLEAAS 498


>gi|304571326|dbj|BAJ15781.1| cryptochrome1 [Cardamine alpina]
          Length = 681

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 136/491 (27%), Positives = 228/491 (46%), Gaps = 25/491 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+ 
Sbjct: 2   SIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 59

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  
Sbjct: 60  SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I      
Sbjct: 117 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVS 176

Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              + P  F+   +      +   +  G  NA   L  F    +  Y + R       TS
Sbjct: 177 KCVSDPLVFEDELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 236

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299
            LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +P
Sbjct: 237 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHP 296

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 297 -YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 355

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FD
Sbjct: 356 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 415

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---T 470
           P G ++R WLPEL+ +PT++IH P +  +        +L  NYP P++   +A       
Sbjct: 416 PNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEA 475

Query: 471 LNQYYAAKKQS 481
           L+Q +  +  S
Sbjct: 476 LSQMWQLEAAS 486


>gi|75048080|sp|Q8WP19|CRY1_MACFA RecName: Full=Cryptochrome-1
 gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis]
          Length = 586

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/501 (24%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  +  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-RNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|254522734|ref|ZP_05134789.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14]
 gi|219720325|gb|EED38850.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14]
          Length = 476

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/482 (31%), Positives = 228/482 (47%), Gaps = 16/482 (3%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           MKA   +SV LVW R DLR+ DN AL AA      +V+ V+I  P +  +    A    +
Sbjct: 1   MKAM-HVSVALVWFRRDLRLQDNPALQAALEAGH-EVVPVYIHAPHEEGEWVPGAASDAW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
            + SL  +   L  +G            DS+  L +   Q     +++NR+YE     RD
Sbjct: 59  RHRSLAALDADLRSRGSSLVLRHG----DSLATLQALVEQIGAEAVYWNRKYEPATQPRD 114

Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +++ L +H +  +S + S+L  P  I     Q YKV+TP+ + ++ +     L + P 
Sbjct: 115 AEIKRTLREHGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWCLPALTAAPK 174

Query: 180 P-AIRLTGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +    +       + +     +  GE  AL  L  F    +  Y EQRD+P
Sbjct: 175 ALTAHKADGLALDELRLAPTLDWDSGFWQHWRPGEAGALEALSVFEDGALRGYREQRDLP 234

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
              GTS++SP+L  G ++P +  + L+            G   +L +L WR+F  HL+  
Sbjct: 235 DRVGTSRMSPHLHFGEIAPWRIAHALEGLRSAGTDADIDG---YLRQLGWRDFAYHLLHH 291

Query: 298 YPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +P         P  ++  W   S   L  W++G TG PI+DA +R+L   G+MHNR+RMI
Sbjct: 292 FPKTPTDN-LNPRFDRFPWATPSVAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMI 350

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS+L K L   W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q +
Sbjct: 351 VASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAE 410

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPL-PIVDHKKACHHTLNQY 474
           +FDPQ  +I  W+PEL  +P +   AP          +  YP  P+VD        L  Y
Sbjct: 411 KFDPQARYISRWVPELAALPVKARFAPWQHPQLLAAHAPGYPRTPLVDLAVGRDAALQAY 470

Query: 475 YA 476
             
Sbjct: 471 RQ 472


>gi|85708828|ref|ZP_01039894.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
 gi|85690362|gb|EAQ30365.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
          Length = 463

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/485 (32%), Positives = 239/485 (49%), Gaps = 40/485 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              ++WLR DLR+ DN ALY A       V+ V++   E    H +      +++ SL  
Sbjct: 3   KPQILWLRRDLRMADNPALYHAAKAG--PVVCVYVLDDEAPEHHRMGGASRWWLHHSLES 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + KSL  +       +     D++E L +         +  N  YE       +  +K+L
Sbjct: 61  LSKSLGTRNAKLILRRG----DAVEELTTVANAVGADTIHANTHYEPW----WRKAQKKL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  +  + +D   L P G +   +   YK+YTPF KAL Q L   D+   P     L+ P
Sbjct: 113 KDEIDLQLYDGVYLFPAGHVTTGSGDPYKIYTPFYKALRQELPPRDVLPEPET---LSSP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPAI 239
                     D+      P +  G        E  A   L ++ ++ V  Y ++R+ P++
Sbjct: 170 DDWPASDELADWNLLPTKPDWSGGIADFWEVGEDAAHERLSEW-EDHVADYEDKRNFPSV 228

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LSP+L  G +SP Q W+ LK        K   G  S+ +ELIWR++  +++  YP
Sbjct: 229 DKTSRLSPHLHFGEISPVQVWHALKH-------KRSDGWNSFESELIWRDYAANVICEYP 281

Query: 300 SVCMGKPFIPWTEKIEWN------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +    + +    +K+EW       K +  L+ W++G TG+PI+DA MRQL   GWMHNR+
Sbjct: 282 AYA-SENYREDYDKLEWRDPDSDEKAAKDLKKWQEGKTGYPIVDAGMRQLWQTGWMHNRV 340

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMITASFL+K LL+DWR GE++F   L+D D +SN   WQW A TG DS  + RI  P  
Sbjct: 341 RMITASFLIKHLLIDWRKGEQWFWDCLVDADYSSNAVNWQWNAGTGVDSNMFSRIMAPLT 400

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q ++FD    +IR ++PEL ++   YIH P    +   L   YP  ++ HK+     ++ 
Sbjct: 401 QSEKFDA-AAYIREYVPELADLDEPYIHDPE---EHGRLPKAYPAKMIAHKEGRERAMSA 456

Query: 474 YYAAK 478
           Y   K
Sbjct: 457 YKDMK 461


>gi|300778354|ref|ZP_07088212.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
           ATCC 35910]
 gi|300503864|gb|EFK35004.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
           ATCC 35910]
          Length = 431

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/474 (32%), Positives = 229/474 (48%), Gaps = 48/474 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYAS 64
              + L WLR DLR+ DN  L+ A   SDA V+ VFI   +   +      R+  +I+ +
Sbjct: 2   KSKITLFWLRRDLRLEDNIGLHHALQ-SDAPVMPVFIFDTDILGKLEDKEDRRVDYIHQA 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL +          + +   IE       +  +  +F NR YE   + RDK + 
Sbjct: 61  LTDINISLKKYHSKLN----TYYGKPIEIFRKLSEEYDIESVFCNRDYEPQAIERDKEIY 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + ++  K+  D V+     I+      Y VYTP+ K   + L     +++ +    
Sbjct: 117 YFFTEKKIPFKACKDQVIFDKDQIVKKDGTPYTVYTPYAKKWRELLTPEHYQAVELNFKN 176

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           L      S+I    +  F+  D  F         +L       +  Y + RD PA+Q T+
Sbjct: 177 LF-SQEYSDILTSKEIGFKKTDFKFS------KPVLDASI---IDDYDQYRDYPALQHTT 226

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QL   L  G +S R+C     +               WL+ELIWREF+  ++  +P V +
Sbjct: 227 QLGIALRFGTISIRKCVAFALKHNA-----------VWLSELIWREFFMQILYHFPRV-V 274

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F    + I+W  +    + W +G TG+PI+DA MR+LN  G+MHNR+RMI ASFL K
Sbjct: 275 HQSFKERYDDIQWRNNEKEFRHWCEGTTGYPIVDAGMRELNQTGYMHNRVRMIVASFLCK 334

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF S+L D DLA+NNG WQWAA +G D+ PYFR+FNPT Q ++FD    
Sbjct: 335 HLLIDWRWGEAYFASKLNDYDLAANNGNWQWAAGSGCDAAPYFRVFNPTTQTEKFDKDLQ 394

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ WLPE N                   +  YP PIV+H  A    L++Y  A
Sbjct: 395 YIKKWLPEWN-------------------TPEYPSPIVEHTFARERALSEYKKA 429


>gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus]
 gi|118572250|sp|Q32Q86|CRY1_RAT RecName: Full=Cryptochrome-1
 gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus]
          Length = 588

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 202/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q LV + +   +P   I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 DVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|172058000|ref|YP_001814460.1| deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum
           255-15]
 gi|171990521|gb|ACB61443.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum
           255-15]
          Length = 451

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 170/470 (36%), Positives = 244/470 (51%), Gaps = 27/470 (5%)

Query: 11  LVWLRNDLRITDNKALYAACH----NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + W+R+D R+ DN  L  A      +  A V  VF   P+   ++     +  + + +L 
Sbjct: 4   ICWIRSDFRLEDNHMLARAVEYLEKDEQANVEFVFWVNPDYIGEYD---ARQQYFFQALE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEK 125
              K+     +  ++ +    D            +    L +N +Y E  + R D +++K
Sbjct: 61  HFAKNCKTHDMPIRFIEGQEKDF-------LEATEMADVLLFNAEYVEPFKSRDDGIMKK 113

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           R   +   +   D  LL P ++  +    YKV+TP++ A ++  V               
Sbjct: 114 RGDKK--TERLLDRHLLHPHAVKKNDGSYYKVFTPYKNAFLKKDVDKPYPVKLNLLKERY 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                +N      +   A D  F +GE+ A   LR F K  +  Y EQRD+PA+ GTS +
Sbjct: 172 HKRRQNNAFMLDYFKRAASDTDFAVGEETARKRLRSFLKNNLSAYEEQRDLPAVDGTSLM 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL  G +  R  ++ +++E      +   G  ++L ELIWREFY  ++  YP      
Sbjct: 232 SRYLRTGEIGIRTIFDAVQQE------QDSKGKQTYLTELIWREFYYTILMHYPE-SKRL 284

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P      KIEW  D    +AW +G TG+PI+DAAMRQLNT GWMHNRLRMI ASFL KDL
Sbjct: 285 PVNEQYTKIEWETDEKGFKAWAEGKTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLTKDL 344

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDW+ GE YF  +L+D + ASN GGWQWAAS G D+VPYFR+FNPT Q K+FD  GTFI
Sbjct: 345 LVDWQKGERYFQQKLVDYEAASNIGGWQWAASVGTDAVPYFRVFNPTTQSKKFDKDGTFI 404

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           R +LPEL ++P   IH P     K+    +YP+PIV+H  A    + ++ 
Sbjct: 405 RTYLPELKDLPKTSIHEPTEQQRKD---YDYPMPIVEHDMARKRAIARFK 451


>gi|73969270|ref|XP_862753.1| PREDICTED: similar to cryptochrome 1 (photolyase-like) isoform 2
           [Canis familiaris]
          Length = 587

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|254184299|ref|ZP_04890889.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655]
 gi|184214830|gb|EDU11873.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655]
          Length = 534

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/494 (30%), Positives = 240/494 (48%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 49  LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 106

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    ++L                D  + + S+        ++++R+Y +     D
Sbjct: 107 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 222

Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230
                  P   +      D    +   P +  G        E  A   LR F   ++  Y
Sbjct: 223 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 282

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+EL WREF
Sbjct: 283 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 341

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 342 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 400

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 401 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 460

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P +            L   YPLPIV H 
Sbjct: 461 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 520

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 521 AARRRALDAFGAIR 534


>gi|56552346|ref|YP_163185.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543920|gb|AAV90074.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 469

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 245/480 (51%), Gaps = 28/480 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R+D R+ DN A+ AA  + +  VI  +I      +    +     ++  SLL + +
Sbjct: 8   LIWFRHDFRLRDNAAITAAIQSRN-PVICFYIQESADAKTESAAD---WWVAESLLALNR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L +KG      +     D+ + +     Q    KLF+NR+Y+      D++L+K ++  
Sbjct: 64  QLKEKGGQLHLFEG----DAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRAM 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF +++L  P ++ N   Q +++++ + +A+ +++    +   P   +  T  + 
Sbjct: 120 GLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRHMNIQAVLPCPENWVFSTREIR 179

Query: 190 PSNIPRFFD-YPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                +       +  D  + I        GE  A   L+ F +  + +Y ++RD PA  
Sbjct: 180 HCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKERDFPAKD 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LS +L  G +S +Q W+ + +           G   +L EL WREF   ++  +P 
Sbjct: 240 GTSLLSAFLRSGQISSKQIWHEVTK------NGSGEGTSKFLEELGWREFAWSVLWEHPD 293

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +       P  +K+ W K S  LQ WK+G TG+P IDA MR L   G+M NRLRM+TASF
Sbjct: 294 LNQHN-LRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLRMVTASF 352

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+DWR G+++F   L+D D A N   WQW A +G +S PYFRI NP +Q ++FDP
Sbjct: 353 LVKHLLIDWREGKKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQSQKFDP 412

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            G +IR W+ EL +V T +IH P      +    NYPLPI+ H++  +  L  +   +  
Sbjct: 413 DGQYIREWVKELADVSTAFIHTPWK---ADKQPANYPLPIIAHEEGRNRALRAWKEIRHA 469


>gi|18413170|ref|NP_567341.1| CRY1 (CRYPTOCHROME 1); ATP binding / blue light photoreceptor/
           protein homodimerization/ protein kinase [Arabidopsis
           thaliana]
 gi|332278156|sp|Q43125|CRY1_ARATH RecName: Full=Cryptochrome-1; AltName: Full=Blue light
           photoreceptor; AltName: Full=Protein BLUE LIGHT
           UNINHIBITED 1; AltName: Full=Protein ELONGATED HYPOCOTYL
           4; AltName: Full=Protein OUT OF PHASE 2; Short=OOP2
 gi|21700897|gb|AAM70572.1| AT4g08920/hy4 [Arabidopsis thaliana]
 gi|332657296|gb|AEE82696.1| cryptochrome-1 [Arabidopsis thaliana]
          Length = 681

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L   
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAAKKQS 481
           +Q +  +  S
Sbjct: 489 SQMWQLEAAS 498


>gi|161138116|gb|ABX58029.1| cryptochrome 2 [Triticum aestivum]
          Length = 650

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/492 (25%), Positives = 217/492 (44%), Gaps = 31/492 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN     A    D  V+ VFI  P +  +         ++  SL  + 
Sbjct: 7   TVVWFRRDLRIDDNP--ALAAAARDGAVLPVFIWCPAEEGRFYTGRCSRWWLKESLAHLA 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE-KRLQ 128
           +SL   G      +      ++  L         T++ Y   Y+   + RD  ++ + L 
Sbjct: 65  RSLQALGCPLVLIRAQT---TLAALLQCVDSIGATRVVYIHLYDPISLVRDDKIKNELLG 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  + +     +  +  + +  ++  +       P   + ++G +
Sbjct: 122 LGISMQSFNGDLLYEPWEVYDENGLPFTTFKKYWEKCMKLHIDISPSLAPWRLVPVSG-I 180

Query: 189 TPSNIPRFFDYPFQA----------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                    +   ++          +   +  G +NA   L  F    +  Y + R   A
Sbjct: 181 ENICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKVA 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS  SPYL  G +S R+ +  ++ + +    + KSGA      +L  +  RE+ R+L
Sbjct: 241 GTTTSLSSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESDNLFLLSIGLREYSRYL 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R
Sbjct: 301 CFNFP-FTRERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           +I +SF VK L + W  G +YF   LLD D+ S+  GWQ+ + +  D     R+ NP +Q
Sbjct: 360 VIVSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQ 419

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH 468
           G+++DP G ++R W+PEL  +P ++IH P             +L  NYP+PIV+   A  
Sbjct: 420 GQKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARE 479

Query: 469 ---HTLNQYYAA 477
                ++  +  
Sbjct: 480 CLDDAISTMWQL 491


>gi|254191331|ref|ZP_04897835.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur
           52237]
 gi|157939003|gb|EDO94673.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur
           52237]
          Length = 534

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/494 (30%), Positives = 240/494 (48%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 49  LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 106

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    ++L                D  + + S+        ++++R+Y +     D
Sbjct: 107 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 222

Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230
                  P   +      D    +   P +  G        E  A   LR F   ++  Y
Sbjct: 223 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 282

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+EL WREF
Sbjct: 283 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 341

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 342 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 400

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 401 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 460

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P +            L   YPLPIV H 
Sbjct: 461 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHD 520

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 521 AARRRALDAFGAIR 534


>gi|251772673|gb|EES53237.1| Deoxyribodipyrimidine photo-lyase [Leptospirillum
           ferrodiazotrophum]
          Length = 468

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 229/476 (48%), Gaps = 21/476 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R++LR++DN+ L  A       V+ V++  P           +  +   SL ++ 
Sbjct: 3   SIVWFRHNLRLSDNRPLSLAAKEG--AVLPVYVHDPTL--SLFPDRVRQRWRKRSLWELD 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           +SL + G        S+     E L     + R  +++  R     +   ++ LE  L +
Sbjct: 59  RSLRKLGNRLHVFSGSSC----EILLKVATRVRAERVYAFRGLTGEDRALEERLENELRK 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V         L PP          +K++TP+ +   Q+ +       P     L    
Sbjct: 115 AGVSLHLTGFDTLYPPDLAAEGRSSPWKIFTPYHRFCRQSFLPEHPLPAPSRVDSLPSLA 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           +                  F  GE  A+H LR+F +  +  Y  +RD PA +GTS+LSP+
Sbjct: 175 SLGGEEEVGGAGEVVSFVGFEPGEAGAMHCLREFLENSLAGYASRRDYPAEEGTSRLSPH 234

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G +S R+   RL+E        P      +L EL WREF  HL+ F+P + +  P  
Sbjct: 235 LASGEISVREIVQRLQE-----SDAPGKDREKFLEELGWREFSAHLLFFHPEMLVD-PLK 288

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM-RQLNTIGWMHNRLRMITASFLVKDLLV 367
                +EW  D     AWK+G TGFP++DA M R+L   GWMHNR+RM+ ASFLVK+L V
Sbjct: 289 KEWATMEWTSDEAGFLAWKEGRTGFPLVDAGMMRELAETGWMHNRVRMVAASFLVKNLGV 348

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W+ G  +F  +LLD D A+N   WQW A  G D+ PYFRIFNP +QG+R+DP G ++R 
Sbjct: 349 SWQSGSRWFAERLLDYDPANNAASWQWVAGCGIDAAPYFRIFNPVLQGQRYDPHGKYVRR 408

Query: 428 WLPELNNVPTQYIHAPHSWLDKND-----LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +LPEL+ +P + IH P       D      S  YP PIVD  ++    L +Y   +
Sbjct: 409 FLPELSALPDEKIHLPRKQSSSADWERPASSQGYPEPIVDLSESREAALRRYRRFR 464


>gi|304571302|dbj|BAJ15769.1| cryptochrome1 [Cardamine nipponica]
 gi|304571304|dbj|BAJ15770.1| cryptochrome1 [Cardamine nipponica]
 gi|304571308|dbj|BAJ15772.1| cryptochrome1 [Cardamine nipponica]
 gi|304571310|dbj|BAJ15773.1| cryptochrome1 [Cardamine nipponica]
 gi|304571312|dbj|BAJ15774.1| cryptochrome1 [Cardamine nipponica]
 gi|304571322|dbj|BAJ15779.1| cryptochrome1 [Cardamine nipponica]
 gi|304571324|dbj|BAJ15780.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/492 (28%), Positives = 233/492 (47%), Gaps = 27/492 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+ 
Sbjct: 2   SIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 59

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  
Sbjct: 60  SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V
Sbjct: 117 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDV 175

Query: 189 TP--SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +   S+   F D   +  + +    +  G  NA   L  F    +  Y + R       T
Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFY 298
           S LSP+   G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +
Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +F
Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469
           DP G ++R WLPEL+ +PT++IH P +  +        +L  NYP P++   +A      
Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474

Query: 470 TLNQYYAAKKQS 481
            L+Q +  +  S
Sbjct: 475 ALSQMWQLEAAS 486


>gi|238757988|ref|ZP_04619169.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236]
 gi|238703742|gb|EEP96278.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236]
          Length = 362

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 200/361 (55%), Positives = 250/361 (69%), Gaps = 6/361 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVW RNDLRITDN AL AAC +  A+VIA+FIATP+QW  H ++ RQ+ F+  +L 
Sbjct: 1   MATHLVWFRNDLRITDNLALNAACQDPQARVIALFIATPKQWAAHDMAPRQAAFLQQNLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L+ K I   YHQC +F D++ WLD++C QQ+V  LFYN+QYE+NE RRD+ L  R
Sbjct: 61  LLQSALAAKSIALHYHQCDDFQDAVIWLDNFCQQQQVDALFYNQQYELNERRRDEALAVR 120

Query: 127 LQHR-----VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L        + C  F DS+LLPPGS+L    +MYKV+TPFR+A IQ L+ +D   +P P 
Sbjct: 121 LNSGANGRNITCHRFHDSLLLPPGSVLTGNNEMYKVFTPFRRAFIQRLLMSDNACVPAPI 180

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            R       S  P  FDYP Q +DP +FP GE  AL  LR FC+E+V  Y +QRD PA+ 
Sbjct: 181 ARDNMAAATSFPPLLFDYPQQPVDPILFPAGEDAALQRLRSFCREQVQDYHQQRDFPAVS 240

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LSPYL++GVLSPRQC+NRL+ E    L  P SGAF+WLNELIWREFY HL+  YP 
Sbjct: 241 GTSCLSPYLALGVLSPRQCFNRLRAECPAGLENPDSGAFTWLNELIWREFYCHLLVAYPR 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +C   PFI WT+ + WN     L AW+QG TG+PI+DAAMRQLN  GWMHNRLRMI+ASF
Sbjct: 301 LCQHHPFIGWTDAVIWNHSELQLTAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASF 360

Query: 361 L 361
            
Sbjct: 361 F 361


>gi|304571314|dbj|BAJ15775.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/492 (28%), Positives = 233/492 (47%), Gaps = 27/492 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+ 
Sbjct: 2   SIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 59

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  
Sbjct: 60  SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V
Sbjct: 117 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDV 175

Query: 189 TP--SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +   S+   F D   +  + +    +  G  NA   L  F    +  Y + R       T
Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFY 298
           S LSP+   G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +
Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +F
Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469
           DP G ++R WLPEL+ +PT++IH P +  +        +L  NYP P++   +A      
Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474

Query: 470 TLNQYYAAKKQS 481
            L+Q +  +  S
Sbjct: 475 ALSQMWQLEAAS 486


>gi|218437350|ref|YP_002375679.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
 gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
          Length = 488

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 137/491 (27%), Positives = 232/491 (47%), Gaps = 37/491 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLR+ D++AL  A     A +I  +     Q+R            ++ F+  S+
Sbjct: 7   LIWFRNDLRLHDHEALNEALQE-KADIIPFYCFDERQFRTTSYGFPKTGKFRAQFLLESV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL + G      Q          +        +T L+Y+ +    E+  +K L+K
Sbjct: 66  ADLRQSLQKLGSNLVIRQGLPEL----IIPQIAQPLNITALYYHEEVTAEELTVEKRLKK 121

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    +  +SF  + L  P ++     Q+ +++T FRK + +    A +    +PA + 
Sbjct: 122 ALAKCNIKVESFWGTTLYHPDNLPFEIYQLPELFTNFRKQVERKSTVAPV----LPAPKS 177

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM---------FPIGEQNALHILRKFCKEKV--YYYVEQ 233
             P+   +I          ++P          F  GE      L+ +  +K     Y E 
Sbjct: 178 LPPLPDLDIGNLPSLSELGLEPAVFEPRGVLKFQGGEIAGRERLQDYIWQKNCLKNYKET 237

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +S+ SP+L+ G LSPR  +  +++     +       +  + EL+WR+F+R
Sbjct: 238 RNEMLGADYSSKFSPWLAHGCLSPRYIYEEVQKYEHQRV--KNDSTYWLIFELLWRDFFR 295

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            + A + +       +   + + W +D    + W++G TG+P++DA MR+L T G+M NR
Sbjct: 296 FICAKHGNKIFFSQGLQGID-LPWKEDWQRFKLWQEGKTGYPLVDANMRELATTGFMSNR 354

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   FR FN  
Sbjct: 355 GRQNVASFLTKNLGINWLMGAEWFESLLIDYDVCSNYGNWNYTAGVGNDARG-FRYFNIP 413

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
            Q K +DP+G ++R+WLPEL  VP   IH P     +        L ++YP P+VD  K+
Sbjct: 414 KQSKDYDPKGDYLRYWLPELALVPGDKIHEPWKLSQEEQKRYRVRLGVDYPHPVVDFFKS 473

Query: 467 CHHTLNQYYAA 477
                  Y+ A
Sbjct: 474 VKGNEALYHRA 484


>gi|319954856|ref|YP_004166123.1| deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
 gi|319423516|gb|ADV50625.1| Deoxyribodipyrimidine photo-lyase [Cellulophaga algicola DSM 14237]
          Length = 436

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/474 (30%), Positives = 212/474 (44%), Gaps = 47/474 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            + + W R DLR+ DN  LY A    D  V+ +FI   E          +  FI+  L  
Sbjct: 4   KISIFWFRRDLRLEDNVGLYQALK-GDYPVLPIFIFDKEILENLPKDDARVSFIFEQLES 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ +L ++    +           E   S      V  ++ N  YE     RD  ++  L
Sbjct: 63  MRNTLQEE---VESSLAIYHGTPQEIFKSLIKDYEVQAVYTNHDYEPYATERDTKIQDYL 119

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +  +V   S+ D V+   G +L      Y VYTP++                        
Sbjct: 120 KDKQVDFHSYKDQVIFEKGDVLKDDGDPYVVYTPYKNKWKTIFDAKKDLETYNTKKYFKN 179

Query: 187 PVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTS 243
            +  S +P     D  F+      P               + +  Y + R+ PAI+ GTS
Sbjct: 180 FIAHSRLPNLSLSDMGFETSKIKVPNYSAG---------SKVIQNYEDTRNYPAIENGTS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +L P+L  G +S R+   R   E  ++          + +ELIWREF+  ++  +P    
Sbjct: 231 RLGPHLRFGSVSIREITKRAIAEKNEV----------FWSELIWREFFMQILWHFPHTTK 280

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F P  ++IEW  +    + WK G TG+ ++DA MR+LNT G+MHNR+RM+ ASFL K
Sbjct: 281 -NAFRPKYDRIEWRNNEAEFEKWKNGETGYALVDAGMRELNTTGYMHNRVRMLVASFLCK 339

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF  +LLD DL++N G WQWAA +G D+ PYFRIFNP  Q  +FD Q  
Sbjct: 340 HLLIDWRWGEAYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPMTQVDKFDKQKE 399

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I  W+ +L  +                    YP  +VDHK A    L  Y  A
Sbjct: 400 YINTWVSDLQELS-------------------YPDKMVDHKMARERCLKTYKEA 434


>gi|304571318|dbj|BAJ15777.1| cryptochrome1 [Cardamine nipponica]
 gi|304571320|dbj|BAJ15778.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/492 (28%), Positives = 233/492 (47%), Gaps = 27/492 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+ 
Sbjct: 2   SIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 59

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  
Sbjct: 60  SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V
Sbjct: 117 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDV 175

Query: 189 TP--SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +   S+   F D   +  + +    +  G  NA   L  F    +  Y + R       T
Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFY 298
           S LSP+   G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +
Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +F
Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469
           DP G ++R WLPEL+ +PT++IH P +  +        +L  NYP P++   +A      
Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNTPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474

Query: 470 TLNQYYAAKKQS 481
            L+Q +  +  S
Sbjct: 475 ALSQMWQLEAAS 486


>gi|38037416|gb|AAR08429.1| cryptochrome 1 [Orobanche minor]
          Length = 679

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/494 (28%), Positives = 226/494 (45%), Gaps = 27/494 (5%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
            T+     +VW R DLR+ DN AL A        V+ +FI  PE+   +        ++ 
Sbjct: 2   GTSGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVLPLFIWAPEEEGHYYPGRVSRWWLK 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL   G      + +   DS+  L          ++F+N  Y+   + RD  
Sbjct: 60  QSLSHLDISLRSLGTSLVTRRST---DSVSSLLEVIKLTGAKQIFFNHLYDPISLVRDHR 116

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++ L    V  +SF+  +L  P  + +   Q +  +  F +  +      +   LP P 
Sbjct: 117 AKEVLTAEGVAVRSFNADLLYEPWEVHDQEGQPFTTFAGFWERCLSMPYDPEAPLLP-PK 175

Query: 182 IRLTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRD 235
             ++G ++   S+   F D   +  + +    +  G  NA   L  F    +  Y + R 
Sbjct: 176 RIISGDLSRCTSDTLVFEDESEKGSNALLARAWSPGWSNADKALTVFTNGPLLEYSKNRR 235

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFY 291
                 TS LSP+L  G +S R+ ++  + + V    +           +L  +  RE+ 
Sbjct: 236 KADSATTSFLSPHLHFGEVSVRKIFHLARIKQVLWANEGNKAGEESINLFLKSIGLREYS 295

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R++   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GW+H+
Sbjct: 296 RYMSFNHP-YSHERPLLGHLKYFPWVIDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 354

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP
Sbjct: 355 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGCELDRIDNP 414

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DH 463
              G + DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D 
Sbjct: 415 QFDGYKCDPNGEYVRRWLPELARLPTEWIHHPWNTPESVLQAAGIELGSNYPLPIVGIDT 474

Query: 464 KKAC-HHTLNQYYA 476
            KA     L+Q + 
Sbjct: 475 AKARLQEALSQMWQ 488


>gi|442529|gb|AAB28724.1| flavin-type blue-light photoreceptor [Arabidopsis thaliana]
          Length = 681

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L   
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAAKKQS 481
           +Q +  +  S
Sbjct: 489 SQMWQLEAAS 498


>gi|163746389|ref|ZP_02153747.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161380274|gb|EDQ04685.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 473

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 228/476 (47%), Gaps = 27/476 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR++D+ AL AAC      VI +FI      +   + A     +  +L  +  
Sbjct: 8   IVWFRRDLRLSDHPALAAACKTG-RPVIPLFIHDN---QSDALGAAPKFRLGLALACLGD 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
           +L +KG      +     D+++ L     Q     ++++R Y+   + RD  ++  L+  
Sbjct: 64  TLKEKGSRLILRRG----DALDVLRDVIEQTGAGAVYWSRLYDPAAIDRDTKVKDALKED 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187
            V   SF   ++  P ++       YKV+TP+ K++    V   L +          P  
Sbjct: 120 GVEACSFAGHLMFEPWTVETKTGGFYKVFTPYWKSVRGRDVAEPLATPSEIRAPEDWPDS 179

Query: 188 --VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +          + P   +GE  A   L  F  + V  Y E RD+P   GTS L
Sbjct: 180 DVLDDWQMDAEMQRGRDVVRPYVRLGEAAAQARLGSFIADIVDGYDESRDMPGEDGTSGL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  LS+G +SP  CW+  +    +     K GA ++L EL WREF  HLM   P + + +
Sbjct: 240 SENLSLGEISPAHCWHAGQRAMQE----GKRGAETFLKELAWREFAYHLMYHTPRI-LDQ 294

Query: 306 PFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +    +   WN+D     + AWKQG TG P +DAAMR+L   G MHNR RMI AS+L K
Sbjct: 295 NWREEWQAFPWNEDERCAEVLAWKQGRTGMPFVDAAMRELQVTGRMHNRGRMIVASYLTK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L+  WRIG+++F   L+D D A+N  GWQWAA +G D+ P+FRIFNP  Q  RFD    
Sbjct: 355 HLMCHWRIGQKWFEEHLIDWDPANNAMGWQWAAGSGPDATPFFRIFNPETQLDRFDKGRN 414

Query: 424 FIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           + R W+ E    P++         P  W  + D   +YP PIVD  +     L+ Y
Sbjct: 415 YTRRWIAEGREKPSEDALEYFDAIPRRWGRRPD--DDYPDPIVDLSEGRARALDAY 468


>gi|78217441|gb|ABB36796.1| cryptochrome 1 [Nicotiana sylvestris]
          Length = 681

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/491 (28%), Positives = 224/491 (45%), Gaps = 25/491 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        VIAVFI  PE+   +        ++  S
Sbjct: 2   SGSGCSIVWFRRDLRVEDNPALAAGVRAG--AVIAVFIWAPEEEGHYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G      + +   DSI  L         T+LF+N  Y+   + RD   +
Sbjct: 60  LAHLDSSLKSLGTSLVTKRST---DSISSLLEIVKSTGATQLFFNHLYDPISLVRDHRAK 116

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L  + I  +SF+  +L  P  + +   + +  ++ F +  +      +   LP   I 
Sbjct: 117 EVLTAQGISVRSFNADLLYEPWEVNDEEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRII 176

Query: 184 LTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                  S+    F+   +      +   +  G  NA   L  F    +  Y + R    
Sbjct: 177 PGDASRCSSDSLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKAD 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++
Sbjct: 237 SATTSFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYM 296

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +P +       W  D    +AW+QG TG+P++DA MR+L   GW+H+R+R
Sbjct: 297 SFNHP-YSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           ++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP   
Sbjct: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFV 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC- 467
           G + DP G ++R WLPEL+ +PT++IH P +  +        +L  NYPLPIV+   A  
Sbjct: 416 GYKCDPHGEYVRRWLPELSRLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAKV 475

Query: 468 --HHTLNQYYA 476
                L+Q + 
Sbjct: 476 RLEQALSQMWQ 486


>gi|325003004|ref|ZP_08124116.1| deoxyribodipyrimidine photo-lyase [Pseudonocardia sp. P1]
          Length = 464

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/478 (32%), Positives = 219/478 (45%), Gaps = 25/478 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A S  +VW R DLR+ D     AA   +D  +   F+  P         A + +F+Y  L
Sbjct: 2   ASSTAVVWFRRDLRVADQPTFLAAADAADRALAL-FVLDPALLD--PSGAARRNFLYGCL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++  +L  + +V +        D  + +           +     Y      RD+ +EK
Sbjct: 59  RELDSALGGRLLVVK-------GDPADVVPRVATAVGADTVHVAADYGPYGRERDEQVEK 111

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L               + PG +       +KV+TPF +A  ++  +A   +       +
Sbjct: 112 ALTDAGAELVRTGSPYAVAPGRVTKGDGDPFKVFTPFSRAWAEHGWRAPAETSASTCTWM 171

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                            +  D   P  GE  A      F  E V  Y  QRD+PA +GTS
Sbjct: 172 DPSGKGGGPRAVQVPADEPCDSALPDAGETAAAARWADFLDEGVAEYESQRDMPAKKGTS 231

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            +SPYL  G + PR           DL  +      ++  E+ WREFY  ++   P    
Sbjct: 232 GMSPYLKYGCVHPRTLL-------ADLGSRRGDSVKAYRTEIAWREFYADVLYRRPDSAR 284

Query: 304 GKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
            + +    + +    D      L+ WK G TGFPI+DA MRQL    WMHNR+RM+ ASF
Sbjct: 285 -RNYDTGFDHLPLRTDEAAYDDLERWKDGRTGFPIVDAGMRQLRAEAWMHNRVRMVVASF 343

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVKDL + W  G  +FM  L+DGDLASN  GWQW A +G D+ PYFRIFNP  QG+RFDP
Sbjct: 344 LVKDLHLPWWWGARHFMQLLVDGDLASNQHGWQWTAGSGTDAAPYFRIFNPITQGERFDP 403

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            G ++R W+PEL +VP + +H P  W  K+ L   YP  +V+HK      L +Y A K
Sbjct: 404 DGDYVRRWVPELADVPGKAVHQP--WKLKDGLPDGYPERMVEHKAEREEALARYEAVK 459


>gi|37520353|ref|NP_923730.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
 gi|35211346|dbj|BAC88725.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
          Length = 479

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 167/477 (35%), Positives = 239/477 (50%), Gaps = 14/477 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+ +VW R DLR+ DN AL+ A      +V+AVFI  P    +   +  + +F+  S+L+
Sbjct: 3   SIAIVWHRRDLRVHDNPALWQASRTG-GQVLAVFIVDPTIVERDDTAPARIYFLRESVLE 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK+    G            + ++ L +         +++N   E     RD    + L
Sbjct: 62  LQKAYRTIGGRLAVR----VGEPVQQLVALAQAVGAGAVYFNDDIEPYARERDARAAEAL 117

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +   I   +  + +L P G +L  A  + Y VYTPF +            +         
Sbjct: 118 RAAGITVHACAEILLHPAGEVLTAAGGKPYTVYTPFWRQWSAKPKPKPFPTP---ERLEA 174

Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             V   + P            +    GEQ+ L  L  F +E +Y Y E+RD+P   GTS+
Sbjct: 175 PTVEEQSFPELAQLGRPFAGELLVSPGEQSGLEQLEAFAREGLYRYGERRDLPGCDGTSR 234

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDL-LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           LS +L  G +  R  W R  + +      + ++G   W  EL WREFY++ +   P +  
Sbjct: 235 LSAHLKFGTVGIRAVWARTMDAWKQAEHDRDRAGLAVWQQELGWREFYKYELFHLPQLA- 293

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G+PF    E  +W++D    + W QG TG+PI+DAAMRQLNT+ WMHNRLRMI ASFL K
Sbjct: 294 GRPFRREFENFQWDEDQERFERWCQGETGYPIVDAAMRQLNTVSWMHNRLRMIVASFLTK 353

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+ +  GE YFM +L+DGDL++NNGGWQWAAS G D  P  RIFNP+ Q  R+DP+  
Sbjct: 354 DLLLPYGWGERYFMQKLVDGDLSANNGGWQWAASVGTDPKP-LRIFNPSTQAGRYDPKAV 412

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FIR WLPEL  V T  +               Y  PIV+HK+       +Y A + Q
Sbjct: 413 FIRRWLPELEGVDTALLVTSERLPPLMRAQHRYAQPIVEHKRQQQVFKERYRAVRAQ 469


>gi|88802270|ref|ZP_01117797.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
           23-P]
 gi|88781128|gb|EAR12306.1| deoxyribodipyrimidine photolyase-class I [Polaribacter irgensii
           23-P]
          Length = 434

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/474 (30%), Positives = 218/474 (45%), Gaps = 49/474 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V++ W R DLR+ DN   Y A   S+  V+ +FI   +   +      + +FIY +L  
Sbjct: 4   AVNIFWFRRDLRLDDNVGFYNALK-SEHPVLPIFIFDEDILDKLQKEDARLNFIYDTLQD 62

Query: 68  VQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  L  + G        +         +    +  +  +F NR YE     RD  ++  
Sbjct: 63  MRAILEKKHGSSIAMLHGNPS----AIFEKLISEYSIHTVFTNRDYEPYATERDNKIQAL 118

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L    I   +F D V+     ++      YKVYTPF K   +     +L      +    
Sbjct: 119 LSSNGIHFDTFKDQVIFEKNEVVKKDGLPYKVYTPFMKVWKEQFKTYNLDFYYTSSF--- 175

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK--VYYYVEQRDIPAIQGTS 243
                 N+ +  + P   +     IG + A   ++K       +  Y E R+ PA+  TS
Sbjct: 176 ----LENLIQNTELPNLHLSD---IGFEVAKQKIKKHTVTPKLIQTYEETRNFPALDSTS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +L P+L  G +S R+   +   E  ++          +  ELIWREF+  ++  +P    
Sbjct: 229 RLGPHLRFGTVSVRKMMEKAISEKNEI----------FWQELIWREFFMQILWHFPYTSK 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F P  ++IEW  +      W QG TG+P++DA MRQLN  G+MHNR+RM+  SFL K
Sbjct: 279 -NSFKPKYDRIEWRNNEAEFNKWCQGETGYPLVDAGMRQLNETGFMHNRIRMLVGSFLCK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF  +L D ++ASN G WQW A +G D+ PYFRIFNPT Q K+FD    
Sbjct: 338 HLLIDWRWGEAYFAKKLHDYEMASNVGNWQWVAGSGVDAAPYFRIFNPTTQIKKFDKDLA 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ W+P    +                    Y   +VDHK+A    L+ Y  A
Sbjct: 398 YIKKWVPNFQEL-------------------TYAKEMVDHKEARERCLSTYKEA 432


>gi|241668656|ref|ZP_04756234.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877189|ref|ZP_05249899.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843210|gb|EET21624.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 464

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/483 (31%), Positives = 236/483 (48%), Gaps = 30/483 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
              + + W R DLR+ DN AL+ A    +   I +FI    Q               AS 
Sbjct: 2   PKKIAIHWFRQDLRLADNPALHQASQADET--ITIFILDENQ-----------EIGGASK 48

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           L +  SLS               + +E +     +  +T  ++NR Y+   + RD  +++
Sbjct: 49  LWLHHSLSSLSKSLNNKLNFFSGNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQ 108

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPVPAIR 183
            LQ + +   SF+ S+L+ P          YKVYTPF K LI+    ++++      +++
Sbjct: 109 FLQEQDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLK 168

Query: 184 LTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                   +  +  +    +Q I   + IGE  +  IL +F   KV  Y   RD  +   
Sbjct: 169 KLETADELDSLKLLEPKLSWQNIIDQWQIGEDASHQILEEFLDGKVKEYKIARDFMSTDS 228

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSPYL  G +SP Q +N ++      L    +    ++ EL+WR+F  + + +YP +
Sbjct: 229 TSKLSPYLHFGEISPNQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL 283

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K      +  EW+ D+ LL+ W+ G TG PI+DA MR+L   G+MHNR+RMI ASFL
Sbjct: 284 -HNKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFL 342

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q ++F+  
Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
             +IR ++PEL  +P + I  P    +         L  NYP P++D KK+    L  + 
Sbjct: 403 -EYIRKYVPELKFLPNKLIAKPWEASELVLQEAGVKLGDNYPTPVIDLKKSRDKALELHK 461

Query: 476 AAK 478
              
Sbjct: 462 KLN 464


>gi|296487421|gb|DAA29534.1| cryptochrome 1 (photolyase-like) [Bos taurus]
          Length = 543

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|261876447|dbj|BAI47549.1| cryptochrome1 [Glycine max]
 gi|261876449|dbj|BAI47550.1| cryptochrome1 [Glycine max]
          Length = 682

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/487 (27%), Positives = 222/487 (45%), Gaps = 22/487 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL A        V+AVFI  PE+  Q+        ++  SL  + 
Sbjct: 8   SIVWFRRDLRIEDNPALTAGVRAG--AVVAVFIWAPEEEGQYYPGRVSRWWLKNSLAHLD 65

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL   G      + +   D++  L         T+LF+N  Y+   + RD   ++ L  
Sbjct: 66  SSLRNLGTPLITKRST---DTLSSLFEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTA 122

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  + +   + +  +  F +  +      +   LP   I      
Sbjct: 123 QGITVRSFNADLLYEPWDVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDAS 182

Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              +    F+   +      +   +  G  NA   L  F    +  Y + R       TS
Sbjct: 183 RCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 242

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299
            LSP+L  G LS ++ ++ ++ + V    +           +L  +  RE+ R++   +P
Sbjct: 243 LLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHP 302

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 303 -YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 361

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP  +G +FD
Sbjct: 362 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFD 421

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473
           P G ++R WLPEL+ +PT++IH P +  +        +L  NYPLPIV    A +  L  
Sbjct: 422 PNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKNRLLEA 481

Query: 474 YYAAKKQ 480
                +Q
Sbjct: 482 LSKMWQQ 488


>gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome 1 [Equus caballus]
          Length = 587

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + RL + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLTDLYRKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus]
          Length = 555

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 202/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q LV + +   +P   I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 DVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|163735096|ref|ZP_02142532.1| deoxyribodipyrimidine photolyase, putative [Roseobacter litoralis
           Och 149]
 gi|161391554|gb|EDQ15887.1| deoxyribodipyrimidine photolyase, putative [Roseobacter litoralis
           Och 149]
          Length = 466

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 151/476 (31%), Positives = 223/476 (46%), Gaps = 27/476 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           VW R DLR++D+ AL AA  + +  VI VFI   +      + A     +   +  + ++
Sbjct: 2   VWFRRDLRLSDHPALNAAVKSGN-PVIPVFIHDDQVET---LGAAPKWRLGLGIDHLSET 57

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L          +      ++E L +   +     +F+ R Y+   V RD  L+  L+   
Sbjct: 58  LEGLNSRLILRRGP----ALETLRTLVQETGAGAVFWTRLYDPAAVDRDTELKAALKQDG 113

Query: 132 I-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP--- 187
           I  +SF   ++  P ++       YKVYTPF   +    V A L +          P   
Sbjct: 114 IDARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVDAPLSAPAKIPAPDAWPSSE 173

Query: 188 -VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            ++  N+    D     + P   +GE  A   L  F  + V  Y   RD PA+ GTS LS
Sbjct: 174 ALSDWNMGAAMDRGAAVVAPYVRLGEAAAQTRLSTFIDKIVARYDTTRDQPAVDGTSGLS 233

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L++G +SP QCW+       +     K GA ++L EL+WREF  HLM   P +     
Sbjct: 234 ENLALGEISPHQCWHAGLRARQE----GKPGAETFLKELVWREFAYHLMHHTPRILTDN- 288

Query: 307 FIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +    +   WN+D     +  W+QG TG   +DAAMR+L   G MHNR RMI AS+L K 
Sbjct: 289 WKEGWDSFPWNRDETTEAVMRWQQGRTGIQFVDAAMRELYVTGRMHNRGRMIVASYLTKH 348

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL DW+IG ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q  +FD    +
Sbjct: 349 LLSDWKIGLKWFEGCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFDKDRQY 408

Query: 425 IRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           ++ W+ +    P++     Y   P +W    D    YP P+V   +     L  Y 
Sbjct: 409 VKRWIAQGRRAPSETALSFYDAIPRAWGLSGD--QEYPAPVVAADEGRKRALEAYE 462


>gi|90424846|ref|YP_533216.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
           BisB18]
 gi|90106860|gb|ABD88897.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
           palustris BisB18]
          Length = 483

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 145/476 (30%), Positives = 225/476 (47%), Gaps = 26/476 (5%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A     + LVW R+DLR++D+ AL  A   S A V+ +++   E      +      ++ 
Sbjct: 2   ANAPAPISLVWFRDDLRLSDHPALDDA-GRSGAAVVCLYVLDEESAGLRPLGGAARWWLA 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR-QYEINEVRRDK 121
            SL  +   L+ +G V    +      +   +     +    ++ +N           D 
Sbjct: 61  QSLRSLSADLAARGGVLILRRGP----AARIVAEVAREAGAVRVSWNDVPNRPARAVADD 116

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           L  +     V  +     +L  P ++     +  +V+TPF K ++           P+ A
Sbjct: 117 LAARLGDLGVAAQCCPGDLLAAPATVRTQQGRGLRVFTPFWKRVLALGDP----PQPLTA 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +    V         D+  +   P         +  GE  A   L+ F    +  Y  +
Sbjct: 173 PKALCSVPSLASDTLDDWKLEPTRPDWAGGLRARWQPGEAAAQRGLQHFLHGAIAGYATE 232

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P    TS LSP+L  G +SPRQ W+  +           +    +L+EL WREF RH
Sbjct: 233 RDRPDRVATSTLSPHLRFGEISPRQVWHAAR-FAAAERPAIAADVDKFLSELGWREFCRH 291

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L+   P +   +   P  ++  W  D   L+AW++G TG+P++DA MR+L   G MHNR+
Sbjct: 292 LLFDNPDLAT-RNLQPAFDRFPWTTDPIALRAWQRGRTGYPLVDAGMRELRLTGVMHNRV 350

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFR+FNP +
Sbjct: 351 RMVAASFLVKHLLLDWRCGEAWFWDTLVDADPASNPANWQWVAGCGADAAPYFRVFNPIL 410

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDH 463
           QG+RFD +G ++R ++PE+  +  + IH P +     L+   ++L   YP PIVDH
Sbjct: 411 QGERFDAEGDYVRRFIPEIAGLSNKSIHQPWTATPLELEAAGVTLGDTYPNPIVDH 466


>gi|300790232|ref|YP_003770523.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32]
 gi|299799746|gb|ADJ50121.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis mediterranei U32]
          Length = 448

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/471 (31%), Positives = 229/471 (48%), Gaps = 30/471 (6%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T  +  ++W R DLR+ D+ AL  A  +S   V+A+++      +     A +  F+Y  
Sbjct: 2   TREAPVVLWFRRDLRLGDHAALLEASRHSK-HVLALYVLDEALLK--PGGAPREAFLYGC 58

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++ + L  + ++ +    +    + + + +         +  +        RRD  + 
Sbjct: 59  LEKLNEQLGGRLMLVRGEPAAEVVKAAKKIGAAA-------VHVSADTGPYGRRRDASVA 111

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           K L +H +       S  + PG +       Y+V+TPF +A       +   + P     
Sbjct: 112 KALAEHNIEWVETGSSYAVTPGRVTKPDGSPYRVFTPFFRAWTARGWHSPADTGPS---- 167

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           L   V P    +    P      +   GEQ AL +  +F  + +  Y E RD P  +GT+
Sbjct: 168 LVDWVEPPRSLKIPKAPA-VSATLPEPGEQAALDVWHEFLDDGIETYDEDRDRPDREGTT 226

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G + PR           DL    + GA S  +E+ WREF+  ++   P    
Sbjct: 227 RLSPYLRWGCIHPRTIL-------ADLAGDDRVGAKSLRSEICWREFHADVLWHRPETAR 279

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              +    + ++++ D    + W  G TG+PI+DA MRQL   GWMHNR+RM+ ASFLVK
Sbjct: 280 EN-YDHRFDGMKYDDDREAFERWCAGRTGYPIVDAGMRQLLAEGWMHNRVRMVVASFLVK 338

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W +G  +FM  L+DGDLASN   WQW A  G D+ PYFRIFNPT QG++FDP G 
Sbjct: 339 DLHLPWWLGARHFMKHLVDGDLASNQLNWQWVAGCGTDAAPYFRIFNPTTQGEKFDPAGD 398

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           ++R ++PEL +VP + +H         D    YP P+VDH      +L +Y
Sbjct: 399 YVRKYVPELRSVPGKAVH------QLKDRPEGYPEPMVDHAHERQVSLERY 443


>gi|738308|prf||1924377A blue light photoreceptor
          Length = 681

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L   
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYQPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAAKKQS 481
           +Q +  +  S
Sbjct: 489 SQMWQLEAAS 498


>gi|304571306|dbj|BAJ15771.1| cryptochrome1 [Cardamine nipponica]
          Length = 693

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/492 (27%), Positives = 233/492 (47%), Gaps = 27/492 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+ 
Sbjct: 2   SIVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD 59

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L  
Sbjct: 60  SSLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTA 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  + +   + + ++  F +  +      +   LP P   ++G V
Sbjct: 117 QGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLP-PKKIISGDV 175

Query: 189 TP--SNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +   S+   F D   +  + +    +  G  NA   L  F    +  Y + R       T
Sbjct: 176 SKCVSDPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFY 298
           S LSP+   G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +
Sbjct: 236 SFLSPHFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNH 295

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +P +   +   W  D +  +AW+QG TG+P++DA M++L   GW+H+R+R++ +
Sbjct: 296 P-YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMKELWATGWLHDRIRVVVS 354

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +F
Sbjct: 355 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKF 414

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH--- 469
           DP G ++R WLPEL+ +PT++IH P +  +        +L  NYP P++   +A      
Sbjct: 415 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHE 474

Query: 470 TLNQYYAAKKQS 481
            L+Q +  +  S
Sbjct: 475 ALSQMWQLEAAS 486


>gi|5524201|gb|AAD44161.1|AF130423_1 cryptochrome 1 [Solanum lycopersicum]
 gi|8101442|gb|AAF72555.1|AF130424_1 cryptochrome 1 [Solanum lycopersicum]
          Length = 679

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/491 (28%), Positives = 224/491 (45%), Gaps = 25/491 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        VIAVFI  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVIAVFIYAPEEEGHYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G      + +   DSI  L         T+LF+N  Y+   + RD   +
Sbjct: 60  LAHLDSSLKSLGTSLITKRST---DSISSLLEVVKSTGATQLFFNHLYDPISLVRDHRTK 116

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L  + I  +SF+  +L  P  + +   + +  ++ F +  +      +   LP   I 
Sbjct: 117 EILTAQGISVRSFNADLLYEPWEVNDDEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRII 176

Query: 184 L-TGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                  PS+   F D   +  + +    +  G  NA   L  F    +  Y + R    
Sbjct: 177 SGDASRCPSDNLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKAD 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++
Sbjct: 237 SATTSFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYM 296

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +P +       W  D    +AW+QG TG+P++DA MR+L   GW+H+R+R
Sbjct: 297 SFNHP-YSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           ++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D     RI NP   
Sbjct: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFV 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC- 467
           G + DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV+   A  
Sbjct: 416 GYKCDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAKV 475

Query: 468 --HHTLNQYYA 476
                L+Q + 
Sbjct: 476 RLEQALSQMWQ 486


>gi|241761599|ref|ZP_04759686.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373907|gb|EER63440.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 467

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 242/476 (50%), Gaps = 28/476 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W R+D R+ DN A+ AA  + +  VI  +I      +    +     ++  SLL + +
Sbjct: 8   LIWFRHDFRLRDNAAVTAAIQSRN-PVICFYIQESADAKTESAAD---WWVAESLLALNR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L +KG      +     D+ + +     Q    KLF+NR+Y+      D++L+K ++  
Sbjct: 64  QLKEKGGQLHLFEG----DAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSIRAM 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF +++L  P ++ N   Q +++++ + +A+ + +    +   P   +  T  + 
Sbjct: 120 GLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYWRAVQRYMNIQAVLPCPENWVFSTREIR 179

Query: 190 PSNIPRFFD-YPFQAIDPMFPI--------GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                +       +  D  + I        GE  A   L+ F +  + +Y ++RD PA  
Sbjct: 180 HCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKERDFPAKD 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LS +L  G +S +Q W+ + +           G   +L EL WREF   ++  +P 
Sbjct: 240 GTSLLSAFLRSGQISSKQIWHEVTK------NGSGEGTSKFLAELGWREFAWSVLWEHPD 293

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +       P  +K+ W K S  LQ WK+G TG+P IDA MR L   G+M NRLRM+TASF
Sbjct: 294 LNQHN-LRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRLRMVTASF 352

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+DWR GE++F   L+D D A N   WQW A +G +S PYFRI NP +Q ++FDP
Sbjct: 353 LVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPILQSQKFDP 412

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            G +IR W+ EL +V T +IH P      +    NYPLPI+ H++     L  +  
Sbjct: 413 DGQYIREWVKELADVSTAFIHTPWK---ADKQPANYPLPIIAHEEGRDRALRAWKE 465


>gi|255531982|ref|YP_003092354.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366]
 gi|255344966|gb|ACU04292.1| Deoxyribodipyrimidine photo-lyase [Pedobacter heparinus DSM 2366]
          Length = 434

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/478 (33%), Positives = 230/478 (48%), Gaps = 48/478 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYAS 64
              V + W R DLR+ DN  LY A  +S   V+ +FI       + G    R+  +I  +
Sbjct: 2   KSKVSIFWFRRDLRLEDNVGLYHAL-SSGFPVLPIFIFDENILGKLGDKKDRRVDYIDQA 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           LL++   L            +   + IE  +    Q  V  +F NR YE   ++RD  + 
Sbjct: 61  LLKINTQLKLSKTRLN----TFHGNPIEIFNMLSEQYAVQAVFCNRDYEPLTIQRDVEIY 116

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +  + +++  K+F D V+     +L +    Y VYTP+ K   + L +   RS   P   
Sbjct: 117 EFFKRNQIPFKAFKDQVIFDKSDVLKNDGTPYTVYTPYSKKWKELLKEEHYRSYH-PDYN 175

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                  + I    D  F+  D  F            K     +  Y + RD PA+Q T+
Sbjct: 176 NFFRQEFTGIHSLNDIGFEKTDIAFET---------PKLTTTIIDEYDKYRDYPAMQRTT 226

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QL   L  G +S R+C     +              +WLNELIWREF+  ++  +P V +
Sbjct: 227 QLGIALRFGTISIRKCVAFGLKHNQ-----------TWLNELIWREFFMQILYHFPKV-V 274

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F    + I+W  + H    W +G TG+PI+DA MRQLN  G+MHNR+RMI ASFL K
Sbjct: 275 DQSFKSKYDNIKWRNNEHEFDRWCEGKTGYPIVDAGMRQLNQTGFMHNRVRMIAASFLCK 334

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF  +L D DL++NNG WQWA+ +G DS PYFR+FNPT+Q ++FD    
Sbjct: 335 HLLIDWRWGEAYFAQKLNDYDLSANNGNWQWASGSGCDSAPYFRVFNPTLQTEKFDKNFA 394

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +++ W+PE                     + NYP PIV+H  A    L  Y  A K++
Sbjct: 395 YLKKWIPEFE-------------------TENYPEPIVEHSFARERALKTYGNAIKEN 433


>gi|111021970|ref|YP_704942.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1]
 gi|110821500|gb|ABG96784.1| deoxyribodipyrimidine photo-lyase [Rhodococcus jostii RHA1]
          Length = 446

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/475 (30%), Positives = 220/475 (46%), Gaps = 34/475 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R DLR+ D   L+     S A+ + +F+              +  F++ SL 
Sbjct: 1   MDTALVWFRRDLRLGDLPTLHT-VSESGARALGLFVLDDRLLTT--SGGARRDFLFRSLA 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  + +V +        D ++ +     +    ++  +  Y      RD  +   
Sbjct: 58  ALDDQLDGRLLVVK-------GDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDAAVA-- 108

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               V   +      + PG +     + Y+V+TP+ +  +++  +A + +       L  
Sbjct: 109 --EHVDLVATGSPYAVAPGRVTKTDGEPYRVFTPYFRQWLEHGWRAPIDTGSATVEWLDP 166

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               +      +          P GE  AL    +FC + +  Y + RD P +  TS++S
Sbjct: 167 NDVKARRVAIPEPESDGC----PAGEAAALQRWAEFCDDDLAGYEDARDRPGLDATSRMS 222

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G + PR           DL  +  + A  +  +L WR+FY  ++   P    G  
Sbjct: 223 VYLKYGNIHPRTML-------RDLARRRSTSAEQYRRQLAWRDFYADILFQRPDSARGN- 274

Query: 307 FIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +    + I ++          AW +G TGFPI+DA MRQL    WMHNR+RMI ASF VK
Sbjct: 275 YDRRFDHIRYDSGSDAEEAYTAWCEGRTGFPIVDAGMRQLKAEAWMHNRVRMIVASFFVK 334

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G  YFM+QL+DGDLA+N  GWQW A +G D+ PYFR+FNPT QG++FDP G 
Sbjct: 335 DLHLPWWRGARYFMNQLVDGDLANNQHGWQWTAGSGTDASPYFRVFNPTTQGEKFDPDGE 394

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++R W+PEL  +P + +HA      K+    +YP PIVDH       L +Y   K
Sbjct: 395 YVRRWVPELRGIPGKAVHA-----LKDGRPEDYPPPIVDHAHERQEALARYGEIK 444


>gi|226364473|ref|YP_002782255.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4]
 gi|226242962|dbj|BAH53310.1| deoxyribodipyrimidine photo-lyase [Rhodococcus opacus B4]
          Length = 446

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/475 (29%), Positives = 222/475 (46%), Gaps = 34/475 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R DLR+ D   L+     S A+ + +F+      +       +  F++ SL 
Sbjct: 1   MDTALVWFRRDLRLGDLPTLHT-VAESGARALGLFVLDDRLLKT--SGGARRDFLFRSLA 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL  + +V +        D ++ +     +    ++  +  Y      RD  +   
Sbjct: 58  ALDDSLDGRLLVVK-------GDPVDVVPRVAKKVSAEEVHVSADYGPYGRERDAAVA-- 108

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               V   +      + PG +     + Y+V+TP+ +  +++  +A + + P     +  
Sbjct: 109 --EHVDLVATGSPYAVAPGRVTKTDGEPYRVFTPYFRQWLEHGWRAPIDTGPDTVEWMDP 166

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               +      +         +  GE  AL    +FC++ +  Y + RD P +  TS++S
Sbjct: 167 DDVKTRRVTIPEPESDG----YAAGEAAALERWAEFCEDDLAGYEDARDRPGLDATSRMS 222

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G + PR           DL  +    A  +  +L WR+FY  ++   P    G  
Sbjct: 223 VYLKYGNIHPRTML-------RDLARRRSKSAEQYRRQLAWRDFYADILFQRPDSARGN- 274

Query: 307 FIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +    + I ++          AW +G TGFPI+DA MRQL    WMHNR+RMI ASF VK
Sbjct: 275 YDRRFDHIRYDSGPDAEDAYTAWCEGRTGFPIVDAGMRQLKAENWMHNRVRMIVASFFVK 334

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G  YFM+QL+DGDLA+N  GWQW A +G D+ PYFR+FNPT QG++FDP G 
Sbjct: 335 DLHLPWWRGARYFMNQLVDGDLANNQHGWQWTAGSGTDASPYFRVFNPTTQGEKFDPDGE 394

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++R W+PEL  +  + +HA      K+    +YP PIVDH       L +Y   K
Sbjct: 395 YVRRWVPELRGISGKAVHA-----LKDGRPEDYPPPIVDHAHERQEALARYGEIK 444


>gi|89199716|gb|ABD63261.1| cryptochrome 1 [Glycine max]
 gi|261876445|dbj|BAI47548.1| cryptochrome1 [Glycine max]
          Length = 681

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 135/487 (27%), Positives = 220/487 (45%), Gaps = 22/487 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL A        V+AVF+  PE+  Q+        ++  SL  + 
Sbjct: 7   SIVWFRRDLRIEDNPALTAGVRAG--AVVAVFVWAPEEEGQYYPGRVSRWWLKNSLAHLH 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL   G      + +   D++  L         T+LF+N  Y+   + RD   ++ L  
Sbjct: 65  SSLRNLGTPLITKRST---DTLSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTA 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  + +   + +  +  F +  +      +   LP   I      
Sbjct: 122 QGITVRSFNADLLYEPWEVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDAS 181

Query: 189 TPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              +    F+   +      +   +  G  NA   L  F    +  Y + R       TS
Sbjct: 182 RCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 241

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299
            LSP+L  G LS ++ ++ ++ + V    +           +L  +  RE+ R++   +P
Sbjct: 242 LLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHP 301

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 302 -YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP  +G +FD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFD 420

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473
           P G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV    A    L  
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLLEA 480

Query: 474 YYAAKKQ 480
                +Q
Sbjct: 481 LSEMWQQ 487


>gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca]
 gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca]
          Length = 587

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 203/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus]
          Length = 584

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/503 (25%), Positives = 202/503 (40%), Gaps = 33/503 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F
Sbjct: 8   MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 64

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL +        +        +       +  VT+L +    E     RD
Sbjct: 65  LLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERD 120

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             + K  +   V   + +   L     I+    Q   +     +ALI  +      ++ V
Sbjct: 121 AAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAV 180

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY 228
            + ++              Y   +++ +           +  GE  AL  L K  + K +
Sbjct: 181 SSQQMESCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAW 240

Query: 229 YYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               +R            + LSPYL  G LS R  + RL + +  +  +  +   S   +
Sbjct: 241 VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQ 299

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL 
Sbjct: 300 LLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 358

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W  S      
Sbjct: 359 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQ 417

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457
            +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP
Sbjct: 418 QFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYP 477

Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480
            PIV+H +     + +     +Q
Sbjct: 478 RPIVNHAETSRLNIERMKQIYQQ 500


>gi|261876451|dbj|BAI47551.1| cryptochrome1 [Glycine max]
 gi|261876453|dbj|BAI47552.1| cryptochrome1 [Glycine max]
          Length = 681

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/501 (28%), Positives = 232/501 (46%), Gaps = 30/501 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVCVFIWAPEEEGQYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +   L   G      + +N   SI  L         T+LF+N  Y+   + RD   +
Sbjct: 60  LAHLDSYLRNLGSPLITKRSTN---SISSLLEVVKSTGATQLFFNHLYDPLSLVRDHKAK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    +  +SF+  +L  P  + +   Q +  ++ F +  +          LP P   
Sbjct: 117 EVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLP-PKRI 175

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           + G V+  PS+   F D   +A + +    +  G  NA   L  F    +  Y + R   
Sbjct: 176 IPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALAAFVNGALIEYSKNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293
               TS LSP+L  G +S ++ ++ ++ + V    +           +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   +P     +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 296 ISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465
            G + DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  +
Sbjct: 415 VGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAE 474

Query: 466 AC-HHTLNQYY---AAKKQSL 482
                 L Q +   AA + ++
Sbjct: 475 VRLQEALIQMWRQEAASRAAM 495


>gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
 gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
          Length = 515

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/492 (26%), Positives = 226/492 (45%), Gaps = 31/492 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLR+ D++ L+ A   + A++I V+   P Q+ +           ++ F+  S+
Sbjct: 29  LIWYRNDLRVHDHEPLHLAVK-AQAEIIPVYCFDPRQFGKTSFGFPKTGVFRAQFLLESV 87

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ SL + G          +D     +     Q  + +++Y R+    E+  +  LEK
Sbjct: 88  TDLRNSLRKLGSDLIVR----YDFPETVIPELVKQLGIDEVYYYREVTSEELAVETTLEK 143

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    V  KS+  + L     +     ++ +V+T FRK + +N         P     L
Sbjct: 144 ALNPLDVSLKSYWGATLYDLDDLPFSINRIPEVFTQFRKQVEKNGTIYASFPTPQRLPIL 203

Query: 185 TGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKV--YYYVEQRD- 235
              +    +P       +           F  GE   +  L  +  E+     Y + R+ 
Sbjct: 204 PQ-IEVGELPTLQKLGLETPQFDQRSVLKFQGGETAGISRLTDYIWEQDCLKDYKQTRNG 262

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ SP+L++G LSPR  ++ +++     +       +  + EL+WR+++R + 
Sbjct: 263 MLGANYSSKFSPWLALGCLSPRFIYDHVQDYEEQRV--KNDSTYWLVFELLWRDYFRFIC 320

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             + +       +     I W +D    + W+ G TGFP++DA MR+L   G+M NR R 
Sbjct: 321 LKHGNKIFRLSGLQGVS-IPWKEDWERFECWRTGTTGFPLVDANMRELAATGFMSNRGRQ 379

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL K+L ++W++G E+F S L+D D+ SN G W + A  GND+   FR FN   Q 
Sbjct: 380 NVASFLTKNLGINWKMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQA 438

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K +D  G +++HWLPEL  +P   +H P              L ++YP P+VD  K+   
Sbjct: 439 KDYDSNGDYVKHWLPELAALPASKVHEPWMLQPVEQKRFGVKLGVDYPNPVVDLMKSVQS 498

Query: 470 TLNQYYAAKKQS 481
               Y AA  ++
Sbjct: 499 NKKSYEAALSKA 510


>gi|124361190|gb|ABN09162.1| Deoxyribodipyrimidine photolyase, class 1 [Medicago truncatula]
          Length = 679

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/499 (28%), Positives = 232/499 (46%), Gaps = 27/499 (5%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           +++     +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++ 
Sbjct: 2   SSSGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVGVFIWAPEEEGQYYPGRVSRWWLK 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL   G      + +   DS+  L         T++F+N  Y+   + RD  
Sbjct: 60  NSLAHLDSSLRNLGTPLVTKRST---DSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHR 116

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++ L    +  +SF+  +L  P  + +   Q +  +  F +  +          LP P 
Sbjct: 117 AKEILTAQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPLLP-PK 175

Query: 182 IRLTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRD 235
             + G V+  PS+   F D   +A + +    +  G  NA   L  F    +  Y + R 
Sbjct: 176 RIIPGDVSKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRR 235

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFY 291
                 TS LSP+L  G +S ++ ++ ++ + V    +           +L  +  RE+ 
Sbjct: 236 KADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYS 295

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R++   +P     +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+
Sbjct: 296 RYISFNHP-YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 354

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP
Sbjct: 355 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNP 414

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465
             +G + DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV+   
Sbjct: 415 QFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDA 474

Query: 466 AC---HHTLNQYYAAKKQS 481
           A       L Q +  +  S
Sbjct: 475 ATVRLEEALIQMWQLEAAS 493


>gi|149279055|ref|ZP_01885189.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
 gi|149230334|gb|EDM35719.1| deoxyribodipyrimidine photolyase-class I [Pedobacter sp. BAL39]
          Length = 433

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 148/474 (31%), Positives = 223/474 (47%), Gaps = 47/474 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
              + + WLR DLR+ D+ ALY A       V+ +FI       +  +   +  FIY ++
Sbjct: 2   KKEISICWLRRDLRLEDHTALYHALK-GPHPVLLLFIFDTNILSKLPVKDARVTFIYNTI 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++ + L+Q          S      E       + +V  +F N  YE     RD  L +
Sbjct: 61  KELNEQLAQHDSSIVVKHGSPEKAWTE----LMEEYQVKSVFTNHDYEPYAAERDDSLAE 116

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IR 183
            L+   +   ++ D V+     I+    + Y V+TP+ K  ++ L    ++  P+   ++
Sbjct: 117 FLRSEHISFHTYKDQVIFEKDEIVKADGKPYTVFTPYYKQWLRKLDDFYIKPYPIKKYLK 176

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               +   +IP   D  F+A    FP            F   K+  Y + RD P    T+
Sbjct: 177 HLLKIKRQHIPSLSDMGFEASAQKFPS---------EDF-SRKLDAYEKLRDFPGADATT 226

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            +  +L  G +S R    + K +  +           WL+EL WR+FY  ++  +P   +
Sbjct: 227 HIGMHLRFGTVSIRHAAAQAKTQQAE----------KWLSELAWRDFYMMILWHFPH-TV 275

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F P    I+W  +    +AW QG TG+P++DA MRQLN  G+MHNR+RM+ ASFL K
Sbjct: 276 NSAFKPAYNNIKWRNNEDEFEAWCQGNTGYPLVDAGMRQLNATGYMHNRVRMVVASFLSK 335

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DW+ GE YF  +LLD ++ASN GGWQWA   GND+ PYFR+FNP +Q K+FDP   
Sbjct: 336 HLLIDWKWGETYFAEKLLDYEMASNVGGWQWACGCGNDAAPYFRVFNPELQMKKFDPDFK 395

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I  WLPE      +  H P               PIV+H  A    L  + AA
Sbjct: 396 YIDKWLPEYK----KQKHVP---------------PIVEHAFARERILKVFKAA 430


>gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus]
 gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus]
 gi|81882058|sp|Q9R194|CRY2_MOUSE RecName: Full=Cryptochrome-2
 gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus]
 gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus]
 gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
 gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
 gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus]
 gi|123212126|emb|CAM20614.1| cryptochrome 2 (photolyase-like) [Mus musculus]
 gi|123220429|emb|CAM15994.1| cryptochrome 2 (photolyase-like) [Mus musculus]
 gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
 gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
          Length = 592

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/503 (25%), Positives = 202/503 (40%), Gaps = 33/503 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F
Sbjct: 16  MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 72

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL +        +        +       +  VT+L +    E     RD
Sbjct: 73  LLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERD 128

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             + K  +   V   + +   L     I+    Q   +     +ALI  +      ++ V
Sbjct: 129 AAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAV 188

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY 228
            + ++              Y   +++ +           +  GE  AL  L K  + K +
Sbjct: 189 SSQQMESCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAW 248

Query: 229 YYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               +R            + LSPYL  G LS R  + RL + +  +  +  +   S   +
Sbjct: 249 VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQ 307

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL 
Sbjct: 308 LLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 366

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W  S      
Sbjct: 367 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQ 425

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457
            +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP
Sbjct: 426 QFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYP 485

Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480
            PIV+H +     + +     +Q
Sbjct: 486 RPIVNHAETSRLNIERMKQIYQQ 508


>gi|326384210|ref|ZP_08205892.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197075|gb|EGD54267.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 480

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 152/496 (30%), Positives = 225/496 (45%), Gaps = 44/496 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR++D  +L AA   +++  +AVF+      R     A ++ F+   L  
Sbjct: 3   SPAIVWFRRDLRLSDLPSLSAAADRAESA-LAVFVLDDALVR--PSGAPRTTFLAGCLEA 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L  + +V          D ++ +        V  +  +  +      RD+ +E  L
Sbjct: 60  LDADLGGRLLVV-------SGDPVQVIPELVDVLSVDSVHVSEDFGPYGRARDEAVEAAL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V          + PG +   A   Y+V+TPF++A + +   +   + P     L   
Sbjct: 113 PASVPLIRTGSPYAVSPGRVRTKAGGPYRVFTPFKRAWLDHGWHSPALTGPDTVDWLDPD 172

Query: 188 ----------VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE---KVYYYVEQR 234
                     V  + +             +   GE+ AL   R F      ++  Y + R
Sbjct: 173 SILPRGRIERVGRAAVAELLTEEASDAAALPVAGEKAALERWRAFRDGGTSELDRYADDR 232

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           + P +  TS+LSPYL  G L PR   +       DL  +   GA +  +EL WR+FY  +
Sbjct: 233 NRPDLDATSRLSPYLKFGCLHPRTILH-------DLRARTDDGATTLRSELAWRDFYADV 285

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +   P            +++E++          AW +G TG+PI+DA MRQL   GWMHN
Sbjct: 286 LFHRPETART-GVDAKFDQMEYDSGPDADAAFDAWCRGRTGYPIVDAGMRQLLAEGWMHN 344

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RMI ASFL KDL + W  G  YFM+ L+DGDLASN  GWQW A  G D+ PYFR+FNP
Sbjct: 345 RVRMIVASFLTKDLHLPWWRGARYFMTHLVDGDLASNQHGWQWTAGCGTDAAPYFRVFNP 404

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL----------DKNDLSLNYPLPIV 461
             QG+RFDP G ++R W+PEL  +  + +H P              D  D    YP PIV
Sbjct: 405 VSQGERFDPSGDYVRRWVPELRGIAGKAVHRPWKHAGGRTAEPALFDGTDGDRGYPPPIV 464

Query: 462 DHKKACHHTLNQYYAA 477
           DH +     L +Y   
Sbjct: 465 DHAEERVVALARYRDL 480


>gi|123967845|ref|YP_001008703.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601]
 gi|123197955|gb|ABM69596.1| putative DNA photolyase [Prochlorococcus marinus str. AS9601]
          Length = 477

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 171/484 (35%), Positives = 245/484 (50%), Gaps = 30/484 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN+AL  A   S+A + + +I           S+ ++ F+  SL ++  
Sbjct: 7   LFWHRKDLRIFDNQALIKAFSLSNA-ITSTYIFDKNYSHDFNASS-RAWFLGNSLQELGN 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G      +     D +  +     +     +F+NR  E  E+ RD  ++K L+ +
Sbjct: 65  NWKKMGSRLVMEEG----DPVLIIPKLAKKINAKFVFWNRSIEPYEINRDLQIKKNLKEQ 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----------IQNLVQADLRSLPV 179
            I      D +L+ P  I +     Y VY PF K L           Q+ V    + +  
Sbjct: 121 NIQVIETWDHLLVEPLKIFSGNNNPYSVYGPFYKNLKSKMNLLGLYEQDKVGFQFKDIDN 180

Query: 180 PAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQRD 235
                T   + S + +F     +P   I P  P GE  A  +L  F  EK +Y Y   RD
Sbjct: 181 KLKDKTINSSDSVLEKFIKNIKFPGSNICPCKP-GENAAETLLENFINEKKIYSYNSARD 239

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHL 294
            P+  GTS LS  L  G +S R+ WN       DL  +       +W  EL+WREFY+H 
Sbjct: 240 FPSHNGTSFLSASLRFGTISIRKVWNATLNLNSDLENQGNYLSIETWQKELVWREFYQHC 299

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +  G P+    +   W  ++   Q W  G TG PI+DAAMRQLN+ GWMHNR R
Sbjct: 300 LFHFPELEKG-PYRKKWDHFRWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNRCR 358

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFLVKDL+ +W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q
Sbjct: 359 MIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 417

Query: 415 GKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
            K+FDP   +I++W+PEL+ V   + ++   S L+KN    +Y  PIV+HK       + 
Sbjct: 418 AKKFDPICEYIKYWIPELSKVSNSELLNGDISNLEKN----DYSSPIVNHKIQQRLFKSL 473

Query: 474 YYAA 477
           Y   
Sbjct: 474 YAEI 477


>gi|257454814|ref|ZP_05620065.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60]
 gi|257447747|gb|EEV22739.1| deoxyribodipyrimidine photo-lyase [Enhydrobacter aerosaccus SK60]
          Length = 515

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 178/512 (34%), Positives = 256/512 (50%), Gaps = 44/512 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           ++L+W R DLR  DN A  A C ++    A VIAV   TP+QW+ H  S  Q   I   +
Sbjct: 1   MNLMWFRQDLRTFDNTAFAACCEHAQQNHAGVIAVVYLTPKQWQSHRKSLWQIDLILRQI 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SLSQ  I        +F      +   C Q  ++ LF N +Y +NEV RD+ + +
Sbjct: 61  RALEQSLSQLNIGIIIRVVDDFASQATDVLELCQQLSISHLFANLEYPVNEVARDQYIAQ 120

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI-- 182
           + Q   ++ + FDDS ++ P  I+      YKV+TPF K  +  +    L   P PA   
Sbjct: 121 QAQSLGIVTQWFDDSQVVAPQRIVTDKGMPYKVFTPFYKRWLAMIETGGLTLSPTPAAMV 180

Query: 183 -------------------RLTGPVTPSNIPRFFDYPFQAIDP-----------MFPIGE 212
                                   +T     R +  P  A+D            ++P GE
Sbjct: 181 INTIQLAKDSRNTNTNTNTNTNDYITIDAFYRAYLIPTAALDKQLNHVSELAQLLYPAGE 240

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEE-F 267
             A   L  F K+ +  Y   RD+PA+      TS+LSPYL+IG+LSPR C+   +++  
Sbjct: 241 AAAQSRLDDFLKKHIADYNTARDVPALNNHLGATSRLSPYLAIGMLSPRLCYLEARQKLN 300

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI-PWTEKIEWNKDSHLLQAW 326
               +  +     W++EL WR+FY  +M   P +  GK F+ P  E + W  D    ++W
Sbjct: 301 SQQGLGSEKDIMRWISELAWRDFYYDVMVNRPDIVKGKAFLTPLDESVAWRYDLADFESW 360

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
            QG TG P++DAAMR LN+ G+MHNRLRM+ A +L K+LL+DWR GE YFM  L+DGD A
Sbjct: 361 YQGKTGVPLVDAAMRCLNSTGFMHNRLRMVVAMYLSKNLLIDWRWGEAYFMQHLVDGDFA 420

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SNNGGWQW+AS G D+ PYFR+ NP  Q    DP  ++I+HW+PEL  VP   I+     
Sbjct: 421 SNNGGWQWSASVGTDAQPYFRVMNPFSQAATHDPDASYIQHWVPELGTVPANIINDEQKL 480

Query: 447 LD--KNDLSLNYPLPIVDHKKACHHTLNQYYA 476
                    + YP      K +    +  +  
Sbjct: 481 QTYLTQHPHIAYPTLDTPTKASRAMAIEAFKK 512


>gi|167628126|ref|YP_001678626.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167598127|gb|ABZ88125.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 464

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 151/483 (31%), Positives = 235/483 (48%), Gaps = 30/483 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
              + + W R DLR+ DN AL+ A    +   I +FI    Q               AS 
Sbjct: 2   PKKIAIHWFRQDLRLADNPALHQASQADET--ITIFILDENQ-----------EIGGASK 48

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           L +  SLS               + +E +     +  +T  ++NR Y+   + RD  +++
Sbjct: 49  LWLHHSLSSLSKSLNNKLNFFSGNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQ 108

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPVPAIR 183
            LQ + +   SF+ S+L+ P          YKVYTPF K LI+    ++++      +++
Sbjct: 109 FLQEQDINVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLK 168

Query: 184 LTGPVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                   +  +  +    +Q I   + IGE  +  IL +F   KV  Y   RD  +   
Sbjct: 169 KLETADELDSLKLLEPKLSWQNIIDQWQIGEDASHQILEEFLDGKVKEYKIARDFMSTDS 228

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSPYL  G +SP Q +N ++      L    +    ++ EL+WR+F  + + +YP +
Sbjct: 229 TSKLSPYLHFGEISPNQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL 283

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              K      +  EW+ D+ LL+ W+ G TG PI+DA MR+L   G+MHNR+RMI ASFL
Sbjct: 284 -HNKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFL 342

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +K+ L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q ++F+  
Sbjct: 343 IKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY 402

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYY 475
             +IR ++PEL  +P + +  P              L  NYP P++D KK+    L  + 
Sbjct: 403 -EYIRKYVPELKLLPNKLLAKPWEASNLVLQESGVKLGDNYPTPLIDLKKSRDKALELHK 461

Query: 476 AAK 478
              
Sbjct: 462 KLN 464


>gi|169236101|ref|YP_001689301.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
 gi|47117035|sp|Q9HQ46|PHR_HALSA RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|148793|gb|AAA72749.1| photolyase (EC 4.1.99.3) [Halobacterium salinarum]
 gi|167727167|emb|CAP13953.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
          Length = 481

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/485 (32%), Positives = 229/485 (47%), Gaps = 22/485 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + L W R DLR TDN+ L AA          +    V AVF    E       +  +  F
Sbjct: 1   MQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLA--HAAPPRVAF 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L  +++     G            D    L +       T++ +N  Y      RD
Sbjct: 59  MLDALAALRERYRDLGSDLIVRHG----DPAAVLPAVANDLDATRVVWNHDYSGLATDRD 114

Query: 121 KLLEKRLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLP 178
             +   L    +    F D+V   PG I  +A   Y VYT F +               P
Sbjct: 115 AGVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKNPPAPEPEP 174

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCK-EKVYYYVEQRDI 236
                 T     S +P   +  F   +   P  G   A  +L  F +   +Y Y ++RD 
Sbjct: 175 ADLAADTALADTSPLPSVQELGFAEPEAAVPDAGTAAARSLLDAFRESGDIYRYEDRRDY 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYRHLM 295
           P  + TS+LSP+L  G +  R  +   +    D     +     +++ +L WREFY  ++
Sbjct: 235 PHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAWREFYAQVL 294

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            F  +V + + F  +   IEW  D   LQAWK G TG+PI+DA MRQL    +MHNR+RM
Sbjct: 295 YFNQNV-VSENFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRM 353

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I A+FL KDLLVDWR G ++F  +L D D A++NGGWQWAASTG D+ PYFR+FNP  QG
Sbjct: 354 IVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQG 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           +R+DP   +I  ++PEL +VP   IH+ H  S  ++   +  YP PIVDH +     +  
Sbjct: 414 ERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHAPEYPDPIVDHSQRREDAIAM 473

Query: 474 YYAAK 478
           +  A+
Sbjct: 474 FERAR 478


>gi|317968588|ref|ZP_07969978.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
          Length = 479

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 168/483 (34%), Positives = 230/483 (47%), Gaps = 23/483 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN    AA   +   V  VF+  P       ++  +  F+  SL ++Q 
Sbjct: 7   LFWHRRDLRLVDNLG-LAAAAAATLAVTGVFVLDPAILSAADMAPARVWFLLESLKELQA 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S  + G      Q     D  E L           + +NR  E     RD+ +   LQ +
Sbjct: 66  SWRKAGSQLLLLQG----DPAEVLPQLAKAIGAGVVAWNRDVEPYGRERDRRVAAALQAQ 121

Query: 131 VICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD------LRSLPVPAIR 183
                   D +L+ P ++       Y+VY PF++     + +         RS P   + 
Sbjct: 122 GQKVLVDWDQLLVAPEALKTGGGDPYRVYGPFKRNWFGQVERRAEAGELAPRSAPQGLLA 181

Query: 184 LTGPVT-PSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKE-KVYYYVEQRDIPA 238
             G +   + +P         +         GE  A   L  FC    +  Y   R++P 
Sbjct: 182 YDGELPVLAELPSLESLGKTFLGAELCPCRPGEAAAKQQLEAFCDGGPLLSYEPGRNMPG 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAF 297
             GTS LS  L  G LSPRQ W+  ++        + +     W  EL WREFY+  +  
Sbjct: 242 EAGTSGLSAALKFGTLSPRQAWDAAQQAKALARSDEQRESIQVWEQELAWREFYQQALFH 301

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +  G P+ P  +   W  D    QAW  G TG PIIDAAMRQLN  GWMHNR RMI 
Sbjct: 302 FPELADG-PYRPQWKLFPWENDPDRYQAWCDGLTGMPIIDAAMRQLNESGWMHNRCRMIV 360

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+LVKDL+ DWR+GE  FM++L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q  +
Sbjct: 361 ASYLVKDLICDWRLGETAFMARLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPATQASK 419

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP+G +IR WLPEL++V T+ + +      +      YP PIV HKK   H    Y + 
Sbjct: 420 FDPEGDYIRRWLPELSHVNTKDLLSGEITPMERR---GYPAPIVSHKKQQAHFKALYASL 476

Query: 478 KKQ 480
            K 
Sbjct: 477 PKA 479


>gi|170079261|ref|YP_001735899.1| DNA photolyase [Synechococcus sp. PCC 7002]
 gi|169886930|gb|ACB00644.1| DNA photolyase [Synechococcus sp. PCC 7002]
          Length = 514

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/488 (29%), Positives = 228/488 (46%), Gaps = 30/488 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W R DLR+ D++ L  A     A++   +   P  +           A +  F+  ++
Sbjct: 7   LLWYRRDLRLHDHQPLQEALAQ-QAQIFPFYCFDPRGFGSIGLDFPKTGAFRGQFLREAI 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++++L  KG      Q    D   + +   C Q ++  ++ +R+    E R ++ L +
Sbjct: 66  QDLRQNLRAKGSDLIVRQ----DIPEKLIPDLCQQWQIDVVYCHREVTAEETRVERKLRQ 121

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            LQ + +  ++F  + L  PG +     ++ +V+T FRK + +    A     P     L
Sbjct: 122 ALQEQGVRVETFWGTTLHDPGDLPFGINEVPEVFTQFRKDVEKYAAIASPVPTPTQLPPL 181

Query: 185 TGPVTPSNIPRFFDY--PFQAIDPM----FPIGEQNALHILRKFCKE--KVYYYVEQRD- 235
              V P  IP   D   P   IDP        GE   +  L+ +  E  ++  Y E R+ 
Sbjct: 182 PETVAPGEIPSLQDLGLPEPTIDPRGVLPLKGGETAGMKRLQAYFWEGDRLKVYKETRNG 241

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ SP+L++G LS R    ++ E     +    +  +  + EL+WR+++R + 
Sbjct: 242 LLGADYSSKFSPWLALGCLSARYIAAQVAEYEQKRI--ANNSTYWLIFELLWRDYFRWIC 299

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A + +    +P      KI W +D    + W+ G TG P +DA MR+L   G+M NR R 
Sbjct: 300 AKHGNQIF-QPEGLQGVKIPWKQDHEAFELWRTGQTGIPFVDANMRELLYTGFMSNRGRQ 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
              SFL K+L +DWR G  +F SQL+D D+ SN G W + A  GND+   FR FN   Q 
Sbjct: 359 NVGSFLTKNLGIDWRWGAAWFESQLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQA 417

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469
           K +DPQG ++RHWLPEL  +P + IH P     K        L   YP P+VD + +   
Sbjct: 418 KDYDPQGDYVRHWLPELAALPGEQIHQPWRLSVKELGDRQIILGETYPKPMVDLQTSVQE 477

Query: 470 TLNQYYAA 477
               Y  A
Sbjct: 478 NERIYQKA 485


>gi|32490931|ref|NP_871185.1| hypothetical protein WGLp182 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166137|dbj|BAC24328.1| phrB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 475

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 190/474 (40%), Positives = 278/474 (58%), Gaps = 10/474 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  +L+W R DLR+ DN ALY AC +       + I   ++W +  +S  +  F+Y ++ 
Sbjct: 1   MIDNLIWFRKDLRLNDNPALYYACVDEYKSASGILILNKKKWNEKIVSKNRIRFMYKNIF 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++++L + GI   ++ C +F +    L ++C   +V +L++N+  E  ++  DK++ K+
Sbjct: 61  SLKRNLKKIGIELIFYTCRDFFEYTCLLYNFCYTNKVKELYFNKGIEKEDLEEDKIIIKK 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+    C  F+ ++L+ P  I N   + YKVY+ F K+ I  +   ++  +P P IR   
Sbjct: 121 LKKITKCICFNGNLLIDPEKIKNKNKKTYKVYSYFLKSCISFISNNNINIIPFPKIRKNK 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                N+ + ++   +    + P  E++AL+ L  F K K+  Y   RD   I  TS LS
Sbjct: 181 L----NLIKSYNDSIKIKKKLSPCYEEHALNKLNNFIKLKINKYHITRDF-CINSTSFLS 235

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY++IGVLS R+C N +K    D + K  SG F W +E+IWREF  HL+  Y      K 
Sbjct: 236 PYINIGVLSLRECINNIKNNNFDFIEKKNSGHFKWFSEIIWREFCHHLIIEYSDFFDSKK 295

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
            I WT+ I+W      +QAWK G TGFPIIDAAMRQL   GWMHNRLRMIT+SFLVKDLL
Sbjct: 296 LIKWTKYIKWENKIKKIQAWKNGTTGFPIIDAAMRQLKKTGWMHNRLRMITSSFLVKDLL 355

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDW+IGE+YF   L+DG+ A NN  WQW +S+G  S PYFR+ NP  Q K+F     +I+
Sbjct: 356 VDWKIGEKYFYYHLIDGNSAINNFNWQWISSSGICSSPYFRMINPITQSKKFKSIYKYIK 415

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            W+PEL N+P   IH P++W+ KN +  NYP  I++HK A    +N + A KK 
Sbjct: 416 FWIPELKNIPFNEIHEPYNWIIKNKI--NYPNQIIEHKTA---KINFFKACKKA 464


>gi|116075564|ref|ZP_01472823.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
 gi|116066879|gb|EAU72634.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
          Length = 492

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 158/499 (31%), Positives = 220/499 (44%), Gaps = 37/499 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG----ISARQSHFIY 62
            S  L W R DLR+ DNK L AA     A V  V++  P           ++  +  F+ 
Sbjct: 3   ASRTLFWHRRDLRLADNKGLQAAAALGSA-VTGVYVLDPAIITPPHHLPPMAPARLWFLV 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L ++Q+     G            D +  L           L ++R  E     RD+ 
Sbjct: 62  ETLRELQQRWRDAGSRLIV----VAGDPVAVLPRLAALLEAPTLVWSRDVEPYARERDRQ 117

Query: 123 LEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           + K LQ          D +L+ P  +       Y+VY PF +     + + +  ++  P 
Sbjct: 118 VAKALQADGRKVLVDWDQLLVAPELLKTGGGDPYRVYGPFLRNWRGQVERTEPSTVEAPT 177

Query: 182 I--------------------RLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILR 220
                                RL             ++ F+ ++      GE  A   L 
Sbjct: 178 GLCDLESEQLEAISSGAGDLGRLCAEGQRELERLQVEHGFRGMELCPCRPGEAAAAEQLA 237

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGAF 279
            F    +  Y   R+ P + GTS LS  LS+G LSPRQ W   +E + +    + +    
Sbjct: 238 TFVDGPLLAYEPDRNFPGVVGTSYLSAALSVGTLSPRQAWCAAQEMKGLARSDEQRQAIT 297

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
            W  EL WREFY+  +  +P +  G P+     +  W  +      WK G TG PIIDAA
Sbjct: 298 VWEQELGWREFYQQALFHFPELANG-PYRDQWRRFPWENNEDWFDFWKDGQTGMPIIDAA 356

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQLN  GWMHNR RMI AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G
Sbjct: 357 MRQLNETGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSG 416

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
            D  P  RIFNP  Q  +FD  G +IR W+PEL +V T+ +    S          YP  
Sbjct: 417 MDPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVNTKDL---LSGEIAALERRGYPEL 472

Query: 460 IVDHKKACHHTLNQYYAAK 478
           +V+HK         Y   +
Sbjct: 473 LVNHKTQQARFKALYATIR 491


>gi|71023993|ref|XP_762226.1| hypothetical protein UM06079.1 [Ustilago maydis 521]
 gi|46101669|gb|EAK86902.1| hypothetical protein UM06079.1 [Ustilago maydis 521]
          Length = 655

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 180/526 (34%), Positives = 264/526 (50%), Gaps = 61/526 (11%)

Query: 11  LVWLR-NDLRITDNKALYAACHNS--------DAKVIAVFIATPEQWRQHGISARQSHFI 61
           + W+R +DLRI DN+AL  A   +           +IA+F+ TP  +  H   AR+  F+
Sbjct: 125 VYWMRMHDLRIHDNRALAHASSLAAARRKNGKGGHLIALFVITPADYSAHDRGARRIDFV 184

Query: 62  YASLLQVQKSLSQKGIVFQYHQ--CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
             +L  ++    +  I F  +     +     E + S C Q   ++L  N +YE++E+ R
Sbjct: 185 LRTLASLKSQFDKLDIPFVVYTYSGEDRAQVGEKVFSLCEQCDASQLTANIEYEVDELWR 244

Query: 120 D-KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------- 171
           D  +LE + +  V      D  ++PPG I  +  + Y V++P+ +   +++ +       
Sbjct: 245 DLAMLEAKDKKGVSFSLLHDCYVVPPGRIKTNDGRPYSVFSPWNRRWTESISKDMSLIEA 304

Query: 172 --------------ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
                           L +L   +   TG   P  +  F     + +  ++P  +Q A  
Sbjct: 305 SEDPEANPKSIRSHPKLGALFELSKLGTGYGIPEELSGFECKDREYMAKLWPATDQAAHQ 364

Query: 218 ILRKFCKE--------------------------KVYYYVEQRDIPAIQGTSQLSPYLSI 251
           +L  F K                           ++  Y E R++ +  GTS++SPYL+ 
Sbjct: 365 VLDNFIKGKGGETALDRAANEPSTAEVGANAKDSRLARYAEGRNLLSENGTSRISPYLAA 424

Query: 252 GVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
           GV+S R+C  R K+     L +   SG   W  E+ +R+FY H++A +P VCMG  FI  
Sbjct: 425 GVVSARECLRRTKQLTKGKLHVGRDSGVAMWNTEISFRDFYAHVLAAWPKVCMGHAFITK 484

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            E + W  DS  L AWKQG TG+PI+DAA RQ    G++HNR RMI+A FL K LL DWR
Sbjct: 485 YEDVVWETDSSTLDAWKQGRTGYPIVDAAQRQCIQQGYIHNRGRMISAMFLTKHLLHDWR 544

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            GE +F    +D D ASNNGGWQW+ASTG D  PYFRIFNP  Q ++ DP G +IRH++P
Sbjct: 545 HGERHFSLNFIDQDFASNNGGWQWSASTGTDPQPYFRIFNPLSQSEKCDPHGDYIRHFVP 604

Query: 431 ELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKACHHTLNQYY 475
           EL NV    IH P   L K +   L YP PIV+H +A    L +Y 
Sbjct: 605 ELKNVKGNAIHDPFHRLSKAEFEKLGYPKPIVEHAQARQRALKRYK 650


>gi|126642518|ref|YP_001085502.1| deoxyribodipyrimidine photolyase (photoreactivation) FAD-binding
           [Acinetobacter baumannii ATCC 17978]
          Length = 381

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 171/380 (45%), Positives = 230/380 (60%), Gaps = 13/380 (3%)

Query: 107 FYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
           + N +  +NE++RDK ++  L +H      F D  + P  SI N + Q Y+V++ F+KA 
Sbjct: 2   YANIEIGVNELKRDKTVQDYLNRHGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKAC 61

Query: 166 IQNLVQADLR-SLPVPAIRLTGP--------VTPSNIPRFFDYPFQAIDP-MFPIGEQNA 215
              L  + L    PVP  +   P        +    I + F          ++P+GEQ A
Sbjct: 62  YTKLDTSGLPQCYPVPNKQNEVPLDFLQGKNIDLDEIEKLFCSSLSKEQQDLWPVGEQYA 121

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           L  L +F +E V +Y  +RD P IQ TS+LSPYL+IG+LS RQC   L            
Sbjct: 122 LEQLDQFIEESVCHYKVERDFPNIQATSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVN 181

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
            G  +WL+EL+WREFY+H++  +P V    PF   T+KI+WN +   L AW+ G TG PI
Sbjct: 182 EGQQTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEHLTAWQMGQTGIPI 241

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DA MRQL   GWMHNR+RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW 
Sbjct: 242 VDAGMRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWC 301

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN 455
           ASTG D+VPYFRIFNP  Q K+FDP+G +IR W+ EL ++  + IH P+S   K DL LN
Sbjct: 302 ASTGTDAVPYFRIFNPITQSKKFDPEGEYIRQWVKELAHLDNKTIHEPYS--SKTDLGLN 359

Query: 456 YPLPIVDHKKACHHTLNQYY 475
           YP PIVD K+     +  + 
Sbjct: 360 YPKPIVDLKETRLKAIETFK 379


>gi|326799093|ref|YP_004316912.1| deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
 gi|326549857|gb|ADZ78242.1| Deoxyribodipyrimidine photo-lyase [Sphingobacterium sp. 21]
          Length = 437

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/475 (33%), Positives = 230/475 (48%), Gaps = 51/475 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69
           + W R DLR+ DN ALY A   S  KV  VFI       +       +  FI+  L  + 
Sbjct: 9   IFWFRRDLRLQDNHALYEALR-SGYKVQPVFIFDTAILSKLEDRDDARVSFIHRELRAIN 67

Query: 70  KSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           K L Q+  GI F +      D+  +  +    +     +++N  YE    +RDK +   L
Sbjct: 68  KQLEQQSSGIAFYH------DEPNKAWEEIVKEFDPIAVYFNHDYEPYARKRDKEISDFL 121

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   +   +F D V+     +L    + Y V+TP+R   +  L ++ L++ P        
Sbjct: 122 RQYHIAVYTFKDQVIFEKEEVLKSNGEPYTVFTPYRNCWLAQLGESHLKNYPSERHLAAL 181

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQL 245
                 IP   +  F A    FP     A+          +  Y + RDIPA + GTS L
Sbjct: 182 RSHWQTIPTLKELGFVATKQTFPSKSYKAV----------IGDYHQTRDIPADEKGTSHL 231

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G +S R      ++              +WLNELIWREFY  ++  +P   + K
Sbjct: 232 SVHLRFGTVSIRSLIKDARQASEK----------TWLNELIWREFYMMILWHFPE-TVNK 280

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F    ++I W  +     AW QG TG+P++DA MRQLN  G+MHNR+RM+ ASFL K L
Sbjct: 281 AFKSAYDRIHWRNNESEFDAWCQGKTGYPLVDAGMRQLNETGFMHNRVRMVVASFLCKHL 340

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L+DWR GE YF  +L D + +SN G WQWAA +GND+ PYFR+FNP IQ K+FDP+  + 
Sbjct: 341 LIDWRWGEAYFARKLQDYEQSSNVGNWQWAAGSGNDAAPYFRVFNPEIQLKKFDPKLVYA 400

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           + W+PEL++                     YP PI++HKKA    L  Y  A K 
Sbjct: 401 KRWIPELDD------------------PFRYPSPIIEHKKARERALEVYKNALKD 437


>gi|13605525|gb|AAK32756.1|AF361588_1 AT4g08920/hy4 [Arabidopsis thaliana]
          Length = 681

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/490 (27%), Positives = 225/490 (45%), Gaps = 25/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       V A+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRAG--PVNALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L   
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAAKKQS 481
           +Q +  +  S
Sbjct: 489 SQMWQLEAAS 498


>gi|212639063|ref|YP_002315583.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1]
 gi|212560543|gb|ACJ33598.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1]
          Length = 468

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 163/476 (34%), Positives = 246/476 (51%), Gaps = 23/476 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M   +VW R D R+ D+ AL  A         K++  F   P   ++         + + 
Sbjct: 4   MHTAVVWFRRDFRLHDHTALVHALRWAKERQGKLLFFFHFDPYFAKERTY---HHEYFFQ 60

Query: 64  SLLQVQKSLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           ++ Q ++ L    GI          D  +  +    +      +F+N+        RD+ 
Sbjct: 61  TVEQFRQMLRHLYGIHVHILHGDIDDVFVRLISRTHM----NAIFFNKDEVGRGKERDEY 116

Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR---SLP 178
           +   LQ   +   ++DD+ L     +L      YKVYTP+ +A  +   +  L     L 
Sbjct: 117 VRTLLQKYGIDVYTYDDAHLHGAFEVLKADGTPYKVYTPYYRAWRKRPKRFPLSIDIDLL 176

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              +    P++  +      +  Q         EQ+ALH+L++F    + YY  QRDIPA
Sbjct: 177 RAHMLQITPLSEYDEHMLKMWLSQCTKRWERTSEQDALHVLQQFIDTSLPYYHRQRDIPA 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS+LSP+L  G LS R  ++ + ++F +   +      +++ EL WR+FY  + A +
Sbjct: 237 VSGTSRLSPHLKTGTLSIRTVFHAVAQQFGNGYDEA---VETYIKELAWRDFYHMIYAHF 293

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     + FI     + W++D    +AWK+G TGFP++DA MRQL   GWMHNRLRMI A
Sbjct: 294 P-FTKTEAFIEKYRHLPWSRDDERFEAWKEGKTGFPLVDAGMRQLKEEGWMHNRLRMIAA 352

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KD L+DWR+GE+YF   L+D D ASN GGWQWAAS G D+VPYFR+FNP  Q K+F
Sbjct: 353 SFLTKDYLIDWRMGEQYFQHMLIDYDEASNIGGWQWAASVGTDAVPYFRVFNPIEQSKKF 412

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           DP GT+IR ++ EL + P+ YIH P     K+++  +YP P VDH+      +  +
Sbjct: 413 DPDGTYIRTYVQELASFPSLYIHEPW----KSNIQTDYPAPTVDHQLQRQRAIALF 464


>gi|209543430|ref|YP_002275659.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531107|gb|ACI51044.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 463

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 150/469 (31%), Positives = 224/469 (47%), Gaps = 35/469 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A +  +VW R D RI DN AL  A        + + I        H   A    +++ ++
Sbjct: 5   APAPTIVWFREDFRIADNMALLEA-EKRGQPTLCIVILDD----AHLPGAAARWWLHGAI 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + ++L   G      + +        L     +     +F+NR+Y+      D  ++ 
Sbjct: 60  RSLDETLRGMGGALHVFRGAAR----AVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKA 115

Query: 126 RLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---------- 174
            L+ R    +SF  ++L  P S+   +   YK++T F +A                    
Sbjct: 116 DLRARGLTVRSFPGALLHEPWSVCTRSGAPYKIFTAFWRAACALPAPFPPHPAPERLVFA 175

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
              P+P   +T       +PR  D+    +  M+  GE+ A   L  F +     Y   R
Sbjct: 176 PPPPMPDSLITRHEQDGLLPRHPDW-AGGLRDMWSPGEEEAGDQLSDFLRHDGAGYATAR 234

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P  + TS+LSP+L  G +SP Q W+             K+    +L EL WR+F   L
Sbjct: 235 DFPGDEATSRLSPFLRFGHVSPAQVWHAATR---------KACPDKFLMELGWRDFAWSL 285

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           + F P +   +   P  + + W  D   L AW++G TG+P++DA MR+L   GWMHNR+R
Sbjct: 286 LFFNPDLAT-RNLRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVR 344

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A TG D+ PYFR+ NP +Q
Sbjct: 345 MVAASFLVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQ 404

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
            ++FDP G +IR W+PEL ++    IHAP     ++  +  YP PIVDH
Sbjct: 405 SRKFDPHGVYIRRWVPELAHLSDDAIHAPW----ESGATHPYPAPIVDH 449


>gi|259416145|ref|ZP_05740065.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
           TrichCH4B]
 gi|259347584|gb|EEW59361.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
           TrichCH4B]
          Length = 474

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 152/484 (31%), Positives = 235/484 (48%), Gaps = 26/484 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W+R DLR+ DN AL AA       +I ++I  P   +   + A     +   L + 
Sbjct: 6   PVIWWIRRDLRLRDNPALTAALETG-GPIIPLYIHDP---QDEALGAAPKFRLGLGLERF 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            K+L   G      +     D++E L     +     + ++R Y+   ++RD  ++++L+
Sbjct: 62  AKTLEGHGSRLTLRKG----DALEVLREVIKESGAGHVVWSRLYDPEAIKRDTEIKEQLK 117

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIR 183
              +  KS    ++  P ++      MYKVYTPF KA+       L+ A        A  
Sbjct: 118 AADITVKSTGGRLMFEPWTVETKDGGMYKVYTPFWKAVRDREVEGLIDAPANLPKPDAWP 177

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            T  +   NI        + +     +G+  AL  L +F +E+V  Y   RD P+   TS
Sbjct: 178 ATDELADYNISAAMRRGAEIVAGYCRVGDDAALEQLDRFLEERVQTYKADRDFPSRAATS 237

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS  L+ G +SP + W+   +   D     K GA  +L E++WREF  HLM   P +  
Sbjct: 238 ELSENLAWGEISPHRMWHLGAQAMRD----GKQGAEHFLKEVVWREFAYHLMYHSPHILT 293

Query: 304 GKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            + +    +   W  D    L  W+QG TG+  +DAAMR+L   G MHNR RMI ASFL 
Sbjct: 294 -RNWREEWDGFPWQDDPGEALLRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASFLT 352

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L++ W+ G ++F   L+D D ASN  GWQW A +G D+ P+FRIFNP  Q ++FDP+G
Sbjct: 353 KHLMIHWKFGMQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDPKG 412

Query: 423 TFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            ++R+WL E  + P Q     +   P SW      +     PI+D K+     L  Y+ +
Sbjct: 413 RYVRNWLAEGQSDPPQTATDFFAATPLSWELSAKDTRA--RPIIDLKRGRERALEAYHDS 470

Query: 478 KKQS 481
           + +S
Sbjct: 471 RDKS 474


>gi|312214969|emb|CBX94922.1| hypothetical protein [Leptosphaeria maculans]
          Length = 633

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 150/488 (30%), Positives = 227/488 (46%), Gaps = 35/488 (7%)

Query: 12  VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            W    DLRI DN AL+ A      +   ++ V++        HG SA +  F+Y  L  
Sbjct: 149 HWFHPKDLRIQDNTALHHASQLAQKNKQHLVCVYVNCAADESWHGTSAARVDFMYEGLKL 208

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK L    I   + +C N  D +  + S+  +Q V+ +F N +YEI+E+RRD  L K +
Sbjct: 209 IQKELKDLNIPLVFLECENRKDIVSTVISWFKEQGVSHVFGNIEYEIDEIRRDIKLVKTI 268

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +      D  ++ PG++L  + +  K++TP+ KA +  +          P   +   
Sbjct: 269 GDDIQVSLHHDQTVVEPGTMLTGSGKPMKIFTPYFKAWLDIVKDQPSLLDTNPPPAVNPA 328

Query: 188 VTPSNIPRFFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
               ++   FD P                + I   +P G   A   + KF K  +  Y  
Sbjct: 329 SAKQDLESLFDTPAPRPAKDKQFENDEDKKRIRKFWPPGYTAASTRMDKFLKH-IPNYAA 387

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD----LLIKPKSGAFSWLNELIWR 288
            R  P+   TS+LSPY S G+ S R    ++ +              +G ++W+ E+++R
Sbjct: 388 TRSDPSKDSTSRLSPYFSAGMYSVRSALRKVTDYNRGSTDFRESAASAGVYAWVREIVFR 447

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E YR      P   M  P       + W  +    QAW  G TG P +DA MRQL    W
Sbjct: 448 ELYRQTTLCTPHTSMNLPQNLKFNSVRWEDNEDHWQAWINGQTGVPFVDAGMRQLAHEAW 507

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM  +S+L  +LL+D+R GE YF   L+D DL +N  GW+          P + +
Sbjct: 508 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLGNNTQGWE----------PSYTV 557

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKAC 467
           FNPT Q ++ DP G FIR W+PEL NV  + + APH  L   +   L YP P VD ++  
Sbjct: 558 FNPTSQAEKNDPDGAFIRKWVPELRNVQGKAVFAPHERLSGTEFEQLGYPRPCVDWRQTK 617

Query: 468 HHTLNQYY 475
              L+++ 
Sbjct: 618 ERCLSRFK 625


>gi|255964973|gb|ACU44659.1| cryptochrome 1 [Medicago sativa]
          Length = 676

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 141/499 (28%), Positives = 231/499 (46%), Gaps = 27/499 (5%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           +++     +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++ 
Sbjct: 2   SSSGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVGVFIWAPEEEGQYYPGRVSRWWLK 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL   G      + +   DS+  L         T++F+N  Y+   + RD  
Sbjct: 60  NSLAHLDSSLRNLGTPLVTKRST---DSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHR 116

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++ L    +  +SF+  +L  P  + +   Q +  +  F +  +          LP P 
Sbjct: 117 AKEILTAQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPPLP-PK 175

Query: 182 IRLTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRD 235
             + G V+  PS+   F D   +A + +    +  G  NA   L  F    +  Y + R 
Sbjct: 176 RIIPGDVSKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRR 235

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFY 291
                 TS LSP+L  G +S ++  + ++ + V    +           +L  +  RE+ 
Sbjct: 236 KADSATTSFLSPHLHFGEVSVKKVLHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYS 295

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R++   +P     +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+
Sbjct: 296 RYISFNHP-YSHERPPLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 354

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP
Sbjct: 355 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNP 414

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465
             +G + DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV+   
Sbjct: 415 QFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDA 474

Query: 466 AC---HHTLNQYYAAKKQS 481
           A       L Q +  +  S
Sbjct: 475 ATVRLEEALIQMWQLEAAS 493


>gi|15559008|gb|AAL02092.1|AF348461_1 cryptochrome 1b [Solanum lycopersicum]
 gi|15559010|gb|AAL02093.1|AF348462_1 Cryptochrome 1b [Solanum lycopersicum]
          Length = 583

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 138/496 (27%), Positives = 224/496 (45%), Gaps = 25/496 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++    +VW R DLR+ DN AL AA       VIAVFI  PE+   +        +I  S
Sbjct: 2   SSGGCSIVWFRRDLRLEDNPALAAAVRAG--SVIAVFIWAPEEEGYYCPGRVSRWWIKKS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL + G      + +   DS+  L         T++F+N  Y+   + RD   +
Sbjct: 60  LAHLDSSLKKLGTSLITKRSN---DSVSSLLQVVKSTGATRVFFNHLYDPISLVRDNCAK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    V   SF+  +L  P  +++   + +  ++ F +  +      +   LP   I 
Sbjct: 117 ETLSAEGVSVCSFNADLLYEPWEVVDDESRPFSTFSDFWEKCLTMPYDPEAPLLPPKRII 176

Query: 184 LTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   +    F+   +      +   +  G  NA   L  F    +  Y + R    
Sbjct: 177 SGDASRCPSDNLVFESELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRSKAD 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSP L  G +S R+ ++R++ +      +           +L  +  REF R++
Sbjct: 237 SATTSFLSPCLHFGEVSVRKVFHRIRTKQTLWANEGNKAGEESVNLFLKSIGLREFSRYM 296

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
             ++P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GW+H+R+R
Sbjct: 297 SFYHP-YSHERPLLGQLKYFPWLVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           ++ +SF VK L + W  G +YF   LLD DL S+  GWQ+   T  D   +  I NP  +
Sbjct: 356 VVVSSFSVKVLQLPWTWGMKYFWDTLLDADLESDALGWQFITGTLPDGCEFLGIDNPQFE 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACH 468
           G +FDP G ++R WLPEL  +PT++IH P    +        +L  NYP PIV+   A  
Sbjct: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPFPIVEIVAAKE 475

Query: 469 H---TLNQYYAAKKQS 481
                L+Q +  +  +
Sbjct: 476 RLEEALSQMWQLEAAA 491


>gi|331694491|ref|YP_004330730.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949180|gb|AEA22877.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 462

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 148/474 (31%), Positives = 215/474 (45%), Gaps = 25/474 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ D     AA  +  A  +A+F+  P           +  F+Y  L  + 
Sbjct: 5   SVVWFRRDLRVRDQPIFLAAADSGPAA-LALFVLDPALLD--PSGPARRTFLYGCLRALD 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128
            +L  + +V +        D  + +           +     +     RRD+ +E+ L  
Sbjct: 62  DALGGRLLVVR-------GDPADVVPRVAAAVGAGTVHVAADFGPYGTRRDQAVEEALAV 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                        + PG +       ++V+TPFR+   +   +    +       +    
Sbjct: 115 DGRELVRTGSPYAVAPGRVTKDDGDPFRVFTPFRRTWSRQRRRGPADTSAATVRWIDPSD 174

Query: 189 TPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             S          + +D   P  GE  A    + F  + V  Y E R+ P ++GTS++S 
Sbjct: 175 EGSGPRAVRIPDDEPLDAALPDPGEDAAHRQWKAFLSDAVDRYGEDRNRPDVEGTSRMSV 234

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G + PR   +       DL       A ++  EL WREFY  ++   P       +
Sbjct: 235 YLKWGCIHPRTMLH-------DLSRHRSGSAETYRTELAWREFYADVLFRRPDSARHN-Y 286

Query: 308 IPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               + +      +   L  AW++G TGFPI+DA MRQL    WMHNRLRMI ASFLVKD
Sbjct: 287 DRAFDALPSASGKRADELFAAWREGRTGFPIVDAGMRQLRAQAWMHNRLRMIVASFLVKD 346

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W  G  +FM  L+DGDLASN  GWQW A +G D  PYFRIFNP  QG+RFDP G +
Sbjct: 347 LHLPWWWGARHFMQLLVDGDLASNQHGWQWTAGSGTDPAPYFRIFNPVTQGERFDPDGDY 406

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R ++PEL +VP + +H P    D   +   YP PIVDH+      L +Y   K
Sbjct: 407 VRRFVPELADVPGRAVHQPWKLPD--GVPDGYPQPIVDHRAERDEALARYERVK 458


>gi|33860843|ref|NP_892404.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33633785|emb|CAE18744.1| putative DNA photolyase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 478

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 168/486 (34%), Positives = 238/486 (48%), Gaps = 33/486 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN+AL  A   SDA + + +I           S+ ++ F+  SL ++  
Sbjct: 7   LFWHRKDLRIFDNQALIKAFSLSDA-ITSTYIFDKNYSHDFNASS-RAWFLGNSLQELGN 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G      +     D +  +     +     +F+NR  E  E+ RD  ++  L+ +
Sbjct: 65  NWKKMGSRLVLEEG----DPVLIIPQLAKKIDAKFVFWNRSIEPYEINRDLEIKNNLKEQ 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFR---------------KALIQNLVQADL 174
            I      D +L+ P  I +     Y VY PF                  ++      D 
Sbjct: 121 NIQVIETWDHLLIEPLKIFSGNNNPYSVYGPFYKNLKSKINLLGSFEQDKVVFQFKDIDN 180

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQ 233
           +     AI  +  V      +   +P   I P  P GE  A  +L  F  EK +Y Y   
Sbjct: 181 KFKENKAINSSDSVL-EKFIKNIKFPGSNICPCRP-GENAAQTLLENFINEKKIYSYNSA 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNELIWREFYR 292
           RD P+  GTS LS  L  G +S R+ WN       D   +       +W  EL+WREFY+
Sbjct: 239 RDFPSHNGTSFLSASLRFGTISIRKVWNATLNLNSDFANQENYLSIETWQKELVWREFYQ 298

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H +  +P +  G P+    +   W  ++ L Q W  G TG PI+DAAMRQLN+ GWMHNR
Sbjct: 299 HCLFHFPELEKG-PYRKKWDHFPWQNNNELFQHWSNGETGVPIVDAAMRQLNSTGWMHNR 357

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFLVKDL+  W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP 
Sbjct: 358 CRMIVASFLVKDLICSWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPY 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
            Q K+FDP   +I++W+PEL+ V   + ++   S L+KN    NY  PIV+H        
Sbjct: 417 TQAKKFDPICEYIKYWIPELSRVSNSELLNGEISNLEKN----NYSSPIVNHNIQQRLFK 472

Query: 472 NQYYAA 477
           + Y   
Sbjct: 473 SLYAEI 478


>gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus]
          Length = 742

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 128/494 (25%), Positives = 194/494 (39%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL     ++      VFI  P       +   +  F+   L  + 
Sbjct: 31  TVHWFRKGLRLHDNPALREGLVDA-TTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLD 89

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K+L +        +        + L     +   T L +    E     RD  +  + + 
Sbjct: 90  KNLRKLNSRLFVVRG----QPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMTKCRE 145

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I   S     L     I+        +     +ALI ++         +    L   V
Sbjct: 146 VGIQVTSRVSHTLYKLDDIIEKNGGKAPLTYHQFQALIASMPPPPSAEPTISLETLNRAV 205

Query: 189 TPSNIP--------RFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           TP +             +  F       P++  GE  AL  L +  + K +     R   
Sbjct: 206 TPISDNHDERFGVPTLEELGFDTEGLKPPIWIGGENEALLRLERHLERKAWVASFGRPKM 265

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             +      + LSPYL  G LS R  + +L E +    IK +    S   +++WREF+  
Sbjct: 266 TPESLLSSQTGLSPYLRFGCLSTRLFYYQLSELYK--RIKQERPPLSLHGQILWREFFYC 323

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+    +   P   +I W K+   L+ W  G TGFP IDA M QL   GW+H+  
Sbjct: 324 AATRNPNFDRMEG-NPICVQIPWEKNQEALKKWANGQTGFPWIDAIMIQLRNDGWIHHLA 382

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 383 RHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 441

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G++ DP G FIR ++P L N+PT+YIH P    +      +  +  +YP+PIVDH KA
Sbjct: 442 RFGRKTDPNGDFIRKYIPVLKNMPTRYIHEPWVCPEEIQKSIRCIIGKDYPMPIVDHTKA 501

Query: 467 CHHTLNQYYAAKKQ 480
               L +      Q
Sbjct: 502 SEINLERIKQVYAQ 515


>gi|83953690|ref|ZP_00962411.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
 gi|83841635|gb|EAP80804.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
          Length = 473

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 161/483 (33%), Positives = 233/483 (48%), Gaps = 27/483 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  S  L+W R DLR++D+ AL AA  N+   VI VFI          + A     +   
Sbjct: 2   SDKSPILLWYRRDLRLSDHPALSAAA-NAGRPVIPVFIKDKSV---DALGAAPKWRLGLG 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  +  SL          +     D++E L +   +     ++++R Y+ + V+RD  ++
Sbjct: 58  IGALADSLEGVSSRLILREG----DALEVLQALIKETGAGTVYWSRLYDPDSVKRDSKIK 113

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVP 180
           + L    +  KSF   V+  P ++   A   YKVYTPF   +    V+  L +   LP P
Sbjct: 114 ETLCNDGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDLPAP 173

Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +   +  +   ++    D     + P   +GE+ A   L  F    V  Y + RDIP  
Sbjct: 174 ESWPDSDALDGWDLGAAMDRGADVVRPFVCLGEKAAQSRLGAFMAHGVADYKQTRDIPGT 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS LS  LS+G +SP QCW+  +    D     K GA ++L EL+WREF  HLM   P
Sbjct: 234 DGTSNLSENLSLGEISPHQCWHAAQRALHD----GKQGAETFLKELVWREFAYHLMHHTP 289

Query: 300 SVCMGKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            +     +    +   WN+D     ++AWKQG TG P +DAAMR+L   G MHNR RMI 
Sbjct: 290 RMLTDN-WREEWDAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRGRMIV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+L K L+  WRIG+++F   L+D D ASN  GWQWAA +G D+ PYFR+FNP  Q  +
Sbjct: 349 ASYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPETQLDK 408

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           FD    +   W+ E    P +   A     P SW    D   +YP  I+   +     L 
Sbjct: 409 FDKNRDYASRWIAEGRANPHKDALAFFDAIPRSWPLSAD--DDYPEKIIALDEGRERALE 466

Query: 473 QYY 475
            Y 
Sbjct: 467 TYK 469


>gi|261876455|dbj|BAI47553.1| cryptochrome1 [Glycine max]
 gi|261876457|dbj|BAI47554.1| cryptochrome1 [Glycine max]
          Length = 681

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 144/500 (28%), Positives = 231/500 (46%), Gaps = 28/500 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        VI+VFI  PE+  Q+        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVISVFIWAPEEEGQYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G      + +N   SI  L         T+LF+N  Y+   + RD   +
Sbjct: 60  LAHLDSSLRNLGSPLITKRSTN---SISSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    +  +SF+  +L  P  + +   Q +  ++ F +  +          LP   I 
Sbjct: 117 EVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRII 176

Query: 184 LTG-PVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
               P  PS+   F D   +A + +    +  G  NA   L  F    +  Y + R    
Sbjct: 177 PGDVPRCPSDTLVFEDELEKASNALLARAWSPGWSNADKALTAFVNGALIEYSKNRRKAD 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHL 294
              TS LSP+L  G +S ++ ++ ++ + V    +           +L  +  RE+ R++
Sbjct: 237 SATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYI 296

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+R+R
Sbjct: 297 SFNHP-YSHERPLLAHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           ++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D     RI NP  +
Sbjct: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFE 415

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKKA 466
           G + DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  + 
Sbjct: 416 GYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAEV 475

Query: 467 C-HHTLNQYY---AAKKQSL 482
                L Q +   AA + ++
Sbjct: 476 RLQEALIQMWQQEAASRAAM 495


>gi|111219604|ref|YP_710398.1| deoxyribodipyrimidine photo-lyase [Frankia alni ACN14a]
 gi|111147136|emb|CAJ58783.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (Photoreactivating enzyme) [Frankia alni ACN14a]
          Length = 451

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 153/476 (32%), Positives = 227/476 (47%), Gaps = 26/476 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V + WLR DLR++D+ AL AA   +D  V+ +F+      R       +  F+Y  L 
Sbjct: 1   MTVSVCWLRRDLRLSDSPALCAAVDGAD-DVLVLFVLDDALRR--PAGPVRLAFLYRCLR 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++   L  +        C    D ++ +          ++  +  Y     RRD  +E+ 
Sbjct: 58  ELDDRLGGRL-------CVRRGDPVDVVPEVARAVDARRVHISADYGPYGRRRDGEVEQA 110

Query: 127 LQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+              + PG +       ++V+TPF +A  ++  +   R +  P     
Sbjct: 111 LRAGGRELVRTGSPYAVAPGRLATAGGTPFRVFTPFYRAWKEHGWR---RPVAEPVGARW 167

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    IP   D     +      GE+ A   L +F    +  Y E+RD+P    TS+L
Sbjct: 168 ALLASDGIPADPDLGGTRLPA---AGERAARERLAEFLAGSLTGYAERRDVPGQDTTSRL 224

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G + PR     L              A  + +EL WREFY  ++A  P+     
Sbjct: 225 SPYLKYGCIHPRTVLAELDRA------TSPRDAEKFRSELAWREFYAEVLAANPASARA- 277

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                   + ++      +AWK G TGFPI+DA MRQL   GW+ NR+RMI ASF+ KDL
Sbjct: 278 DLTGALADMAYDPPEGGFEAWKWGRTGFPIVDAGMRQLLAEGWVPNRVRMIEASFVCKDL 337

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            V W  G  +F+  L+DGDLASN+ GWQW A TG D+ PYFR+FNP  QG R+DP GT++
Sbjct: 338 HVHWTHGARWFLDHLVDGDLASNHHGWQWTAGTGTDAAPYFRVFNPVSQGHRYDPDGTYV 397

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           R W+P+L +VP   +H P  W         YP P+VDH      +L +Y AA+++ 
Sbjct: 398 RRWIPQLRDVPAAKVHEP--WTLPGGPPAGYPAPVVDHATERRESLARYEAARRRG 451


>gi|157827751|ref|YP_001496815.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389]
 gi|157803055|gb|ABV79778.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii OSU 85-389]
          Length = 475

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 156/485 (32%), Positives = 239/485 (49%), Gaps = 32/485 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLL 66
              +VWLR +LR+ DNK+  AA  NSD K++ +FI       +      R+  F+  +L 
Sbjct: 3   KTSIVWLRRNLRLHDNKSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLC 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L +            +   ++ +       ++  ++ +  YE N + RDK +++ 
Sbjct: 62  LINDELKKLKGKLLV----FYGKPLDIIPKLAATLKIKNIYADEDYEPNNIERDKKVQEL 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAI 182
           L        + D +L+ P  +L    + YKVYTP+ +A  + +         + L   + 
Sbjct: 118 LGSNCTLNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFRKFIADNGSISHNKLLTNYSY 177

Query: 183 RLTGPVTPSNIPRFF--DYPFQAIDPMFPIGE----------QNALHILRKFCKEKVYYY 230
            L G +           D      + +  IG           +NA ++L KF   ++  Y
Sbjct: 178 NLDGKLYTPQDIELKTIDLNIGKSEALKQIGYVYKEDELWQPKNAQNVLDKFITRRINRY 237

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              RD   + GTS +SPYL  G++S R+C+ +              G+ +W+NELIWREF
Sbjct: 238 KIDRDFLYLDGTSTISPYLRFGLVSIRECYRKAFNA------ASNPGSITWINELIWREF 291

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y  ++  +P+    +    +  KI WN        +    TG+PIIDAA++QL   GWMH
Sbjct: 292 YATILYHFPNTVNEEFLEKYKNKIPWNNKKEYFDKFINAETGYPIIDAAVKQLVGDGWMH 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RMI ASF  K+LL+DWR GEE+F   L+D +LASN GGWQWA+S G D+ PYFRIFN
Sbjct: 352 NRARMIVASFFSKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  QGK FDP   +I+ +LP L NV    IH     ++ + +  NYP PIVD+  +    
Sbjct: 412 PYTQGKNFDPDAEYIKKYLPILKNVQPHIIHN----INSHKMYDNYPKPIVDYGLSRAKA 467

Query: 471 LNQYY 475
           +  + 
Sbjct: 468 IEVFK 472


>gi|169595114|ref|XP_001790981.1| hypothetical protein SNOG_00291 [Phaeosphaeria nodorum SN15]
 gi|160701021|gb|EAT91786.2| hypothetical protein SNOG_00291 [Phaeosphaeria nodorum SN15]
          Length = 534

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 145/488 (29%), Positives = 225/488 (46%), Gaps = 35/488 (7%)

Query: 12  VWLR-NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            W    DLRI DN AL+ A     +    ++ V++        HG S  +  F+   L  
Sbjct: 50  HWFHPKDLRIQDNTALHHASELAQSKKKPLVGVYVNCAADESWHGTSPARVDFMCEGLKI 109

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +QK L    I   + +C +    +  +  +   Q+V+ +F N +YEI+E+RRD  L K++
Sbjct: 110 MQKELKDLNIPLVFLECEDRKKIVPTVIEWLKGQKVSHVFGNYEYEIDELRRDIKLVKQV 169

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +      D  ++ PG++L  A +  KV+TP+ K  +  L +        PA      
Sbjct: 170 GGGIQVSLHHDQTVIEPGTMLTGAGKPMKVFTPYHKQWLAILKEQPELLDTSPAPAANPS 229

Query: 188 VTPSNIPRFFDYPF---------------QAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                +   FD P                + I  ++P G   A   +  F K  +  Y  
Sbjct: 230 SMKKELKDLFDTPAPKPAADKQFSSDEEKKRIRKLWPAGHAAASKRMDAFLKT-IDSYAA 288

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD----LLIKPKSGAFSWLNELIWR 288
            R  PA   TS+LS Y S G+ S R    ++ +             + G + W+ E+++R
Sbjct: 289 TRSNPAKDSTSRLSAYFSAGMFSVRSALQKVADYNHGSTDFTESSARPGVYGWVREIVFR 348

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E YR      P   M  P     + ++W  D    + W +G TG P IDA MRQLN   +
Sbjct: 349 ELYRQTTLTTPHTSMNMPQNLKFDFVQWEDDEEGWEKWYKGETGEPFIDAGMRQLNHEAY 408

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRM  +S+L  +LL+D+R GE YF   L+D DL++N  GW+          P + +
Sbjct: 409 MHNRLRMNVSSYLYCNLLLDYRRGERYFAETLIDWDLSNNTQGWE----------PSYTV 458

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS-LNYPLPIVDHKKAC 467
           FNP  Q +R DP G +IR W+PEL +V  + + AP++ L K +   L YP P VD K+  
Sbjct: 459 FNPVSQAERNDPDGDYIRKWVPELKDVQGKAVFAPYARLSKAEFEKLGYPKPHVDWKQTK 518

Query: 468 HHTLNQYY 475
              + ++ 
Sbjct: 519 QRCMERFK 526


>gi|99081282|ref|YP_613436.1| deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
 gi|99037562|gb|ABF64174.1| Deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
          Length = 474

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 157/488 (32%), Positives = 233/488 (47%), Gaps = 34/488 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W+R DLR+ DN AL AA   +   +I ++I      ++  + A     +   L + 
Sbjct: 6   PVIWWIRRDLRLRDNPALRAA-QEAGGPIIPLYIHD---AQEEALGAAPKFRLGLGLERF 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            K+L +KG      +     D++E L     +     + ++R Y+    +RD  +++ L+
Sbjct: 62  AKTLEEKGSRLIVRRG----DALEVLREVIAESGAGHVIWSRLYDPAATKRDAKIKEALK 117

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  KS    +L  P ++      MY+VYTPF KA+       D+  L     RL  P
Sbjct: 118 ASDIKAKSTGGRLLFEPWTVDTKDGGMYRVYTPFWKAVRTR----DVAELTAAPSRLAAP 173

Query: 188 VTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +  +     D    A        +     +GE  AL  L  F  E+V  Y   RD PA 
Sbjct: 174 ESWPSGEALADLGMDAAMRRGGAIVAQHCRVGEDAALAQLDDFLTERVSNYKAHRDFPAR 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LS  L+ G +SP + W+   +   D     + GA  +L E++WREF  HLM   P
Sbjct: 234 AATSELSENLAWGEISPHRMWHLGAQAMQD----GQPGAEHFLKEVVWREFAYHLMHRSP 289

Query: 300 SVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +   + +    +   W  D    LQ W+QG TG+  +DAAMR+L   G MHNR RMI A
Sbjct: 290 RILT-RNWREEWDGFPWQDDPGDALQRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K L++ W+ G ++F   L+D D ASN  GWQW A +G D+ P+FRIFNP  Q ++F
Sbjct: 349 SFLTKHLMIHWKYGLQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           DP+G + R WLPE    P +   A     P  W    D S     PI+  K+     L+ 
Sbjct: 409 DPKGDYARRWLPEGQANPPETAMAYFEAIPRRWSLHPDQSR--VSPIIGLKEGRERALSA 466

Query: 474 YYAAKKQS 481
           Y  ++ QS
Sbjct: 467 YKESRNQS 474


>gi|730324|sp|P40115|CRY1_SINAL RecName: Full=Cryptochrome-1; AltName: Full=Blue light
           photoreceptor
 gi|414196|emb|CAA50898.1| photolyase [Sinapis alba]
          Length = 501

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 138/500 (27%), Positives = 226/500 (45%), Gaps = 30/500 (6%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           MS +   +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  
Sbjct: 1   MSTNKKTIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +++SL   G      +  +   ++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLRQSLKALGSELTLIKTHS---TVSAILDCVRATGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L  R I  +S++  + + PG        +  V     K  +   V++ +   P   +
Sbjct: 116 KEKLVERGISVQSYNGDLCMSPGRYTVKRANLLLVLILTGKKCLDMSVESVVLPPPWRLM 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            L+   T        +   +          +   +  G  NA  IL +F ++++  Y + 
Sbjct: 176 PLSAAET-VWACSVEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKN 234

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWRE 289
                   TS LSPYL  G +S R+ +   + +      D   + +  A  +L  +  R+
Sbjct: 235 SKKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRGIGLRD 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R +   +P     +  +       W+ D    +AW+QG TG+P++DA MR+L   GWM
Sbjct: 295 YSRIICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWM 353

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ + +  D     R+ 
Sbjct: 354 HNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLD 413

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           NP IQG ++DP+G +IR WLPEL  +PT++IH P             +L  NY  PIV  
Sbjct: 414 NPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVVI 473

Query: 464 KKACHHTLNQYYAAKKQSLL 483
             A           ++  ++
Sbjct: 474 DTARELLTKAISRTREAQIM 493


>gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Microcoleus chthonoplastes PCC 7420]
 gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Microcoleus chthonoplastes PCC 7420]
          Length = 488

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 237/488 (48%), Gaps = 31/488 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLR+ D++ L+ A     A+VI  +      +           A ++ F+  S+
Sbjct: 7   LLWYRNDLRLHDHEPLHQALQT-KAQVIPCYCFDDRLFHTTSFGFPKTGAFRAKFLLESV 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++++  +G      +    +     + +   +  +T ++++++    EV  +  L+ 
Sbjct: 66  ADLRENVRSRGSNLLVRRGLPEN----VIPTLAKELDITTVYFHQEVTSEEVAVESALKN 121

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    +  ++F  S L  P  +  + L++ +++T FRK + +          P     L
Sbjct: 122 ALSEIGITVQTFWGSTLYHPDDLPFNLLKIPELFTNFRKQVEKKSTIYPPFPTPKRLPSL 181

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFC--KEKVYYYVEQRD- 235
              V    +P+  D+  ++          F  GE   L  L  +   K+ +  Y + R+ 
Sbjct: 182 P-SVEVGELPQLADFGLESPIFDERAVLPFQGGETAGLARLNDYFWKKDCLKVYKQTRNG 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ SP+L++G LSPR  + ++++   + +       +  + ELIWR+F+R + 
Sbjct: 241 MLGSDYSSKFSPWLALGCLSPRFIYEQVQQYEQEQI--KNDSTYWLVFELIWRDFFRFIC 298

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A + +    +P       I W +D      W+QG TGFP+IDA MR+L   G+M NR R 
Sbjct: 299 AKHGNRIF-RPSGLQGIPIPWKEDWDRFTLWQQGKTGFPLIDANMRELAATGFMSNRGRQ 357

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL K+L ++W+IG E+F S L+D D+ SN G W + A  GND+   FR FN   Q 
Sbjct: 358 NVASFLTKNLGINWQIGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIQKQS 416

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K +DPQG +++HWLPELN++P   +H P +            L ++YP P+VD  ++   
Sbjct: 417 KDYDPQGYYVKHWLPELNSLPAAKVHQPWTLTSAEQKQFGVRLGVDYPNPVVDLMESVKA 476

Query: 470 TLNQYYAA 477
               Y AA
Sbjct: 477 NEKVYNAA 484


>gi|121601607|ref|YP_993682.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1]
 gi|126448880|ref|YP_001081232.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247]
 gi|238562973|ref|ZP_00439583.2| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4]
 gi|254178225|ref|ZP_04884880.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399]
 gi|254199318|ref|ZP_04905684.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH]
 gi|254205631|ref|ZP_04911983.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU]
 gi|121230417|gb|ABM52935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1]
 gi|126241750|gb|ABO04843.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247]
 gi|147748914|gb|EDK55988.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH]
 gi|147753074|gb|EDK60139.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU]
 gi|160699264|gb|EDP89234.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399]
 gi|238521576|gb|EEP85026.1| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4]
          Length = 486

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 152/494 (30%), Positives = 239/494 (48%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW  +DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 1   MSSSISIAPAVVWFCDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    ++L                D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 174

Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230
                  P   +      D    +   P +  G        E  A   LR F   ++  Y
Sbjct: 175 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 234

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+EL WREF
Sbjct: 235 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 294 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 353 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P +            L   YPLPIV + 
Sbjct: 413 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYD 472

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 473 AARRRALDAFGAIR 486


>gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
 gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
 gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus]
          Length = 594

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 130/503 (25%), Positives = 199/503 (39%), Gaps = 33/503 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F
Sbjct: 16  MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 72

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL +        +        +       +  VT+L +    E     RD
Sbjct: 73  LLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERD 128

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL---- 174
             + K  +   V   + +   L     I+    Q     Y  F+  + +  +        
Sbjct: 129 AAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAV 188

Query: 175 ---RSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVY 228
                    A           +P   +  F  + + P  +  GE  AL  L K  + K +
Sbjct: 189 SSQHMENCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAW 248

Query: 229 YYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               +R            + LSPYL  G LS R  + RL + +  +  +  +   S   +
Sbjct: 249 VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVK-RNSTPPLSLFGQ 307

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL 
Sbjct: 308 LLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 366

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W  S      
Sbjct: 367 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQ 425

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457
            +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP
Sbjct: 426 QFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYP 485

Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480
            PIV+H +     + +     +Q
Sbjct: 486 RPIVNHAETSRLNIERMKQIYQQ 508


>gi|209524800|ref|ZP_03273346.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
 gi|209494679|gb|EDZ94988.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
          Length = 486

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 124/487 (25%), Positives = 229/487 (47%), Gaps = 31/487 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           ++W R+DLR+ D++ L  A  ++ A++I ++   P Q+ +       +   +  F+  S+
Sbjct: 9   ILWYRHDLRLHDHEPLDLAT-STQAQIIPLYCFDPRQFAKTSFGFPKMGGFRGKFLLESV 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ +L + G            +    +     Q  +  ++Y+++    E+  ++ LEK
Sbjct: 68  ADLRHNLQKIGSNLLVR----IGEPETVIFDLVKQLNIDAVYYHKEVTTEELAVERALEK 123

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    V  KSF  + L  P  +     ++ +++T FRK + +  +     + P      
Sbjct: 124 ALTPLGVEVKSFWGATLYHPKELPFPIEKLPELFTNFRKQVEKKSIIYPPYTPPKQLPTF 183

Query: 185 TGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKV--YYYVEQRD- 235
              + P  IP   +     +         F  GE   L  L  +  ++     Y + R+ 
Sbjct: 184 PD-IEPGEIPTLAELGITKLPFDSRAVLDFVGGETAGLTRLNDYFWQRDCLKNYKQTRNG 242

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ SP+L+ G LSPR  + ++ +     +       +  + EL+WR+++R + 
Sbjct: 243 MLGSDYSSKFSPWLANGCLSPRWIYQQVCDYEQQRV--KNDSTYWLVFELLWRDYFRFIC 300

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +      K  +    KI W ++    Q+W  G TGFP++DA MR+L   G+M NR R 
Sbjct: 301 LKHGRKVFYKSGLQGV-KIPWGENWQQFQSWCDGLTGFPLVDANMRELAATGFMSNRGRQ 359

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL K+L ++W++G E+F S L+D D+ SN G W + A  GND    FR FN   Q 
Sbjct: 360 NVASFLTKNLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFNIAKQS 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHH 469
           + +DP G +++HWLPEL ++P   +H+P    ++  +       ++YP P+VD +++   
Sbjct: 419 QDYDPMGDYVKHWLPELASIPHGKVHSPWRLSNQEQIRFGMRLGVDYPYPMVDLQRSVEA 478

Query: 470 TLNQYYA 476
               Y  
Sbjct: 479 NRRIYEK 485


>gi|300704913|ref|YP_003746516.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum CFBP2957]
 gi|299072577|emb|CBJ43927.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
           [Ralstonia solanacearum CFBP2957]
          Length = 522

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 162/475 (34%), Positives = 233/475 (49%), Gaps = 31/475 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----SARQSHFIYASL 65
            LVW R DLR  D+ AL+ A  +   +V   F+               + R+  FI A++
Sbjct: 27  GLVWFRRDLRHIDHAALHYALRHC-REVFCAFVFDRGILDPLLARGLRADRRVEFIRAAV 85

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ +L + G           D +   + S   Q  V  +F N   E   + RD  +  
Sbjct: 86  EALRSALREAGGELIVLH----DHAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRD 141

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L  +      F D V+     +LN   + Y V+TP++ A +  +   DLR+ P+     
Sbjct: 142 ALARQPCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVSPFDLRAYPIEPHLH 201

Query: 185 TGPVTPSNI----PRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                P  +    P      F   +      P G   A  +L  F   ++  Y  +RD P
Sbjct: 202 ALARPPQGLAPATPSLEAMGFARSNLSVIALPTGMSGAEALLDDF-ATRMDDYHARRDYP 260

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A++G S LS +L  G +S R    R        ++    GA +WL+ELIWR+FY  ++  
Sbjct: 261 AVRGPSYLSTHLRFGTVSIRTLAARAH----SAMLHGSRGAATWLSELIWRDFYFMILHH 316

Query: 298 YPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            P +  G  F P  ++I W           AW+   TG+P++DAAM Q+   G+MHNRLR
Sbjct: 317 RPDLAEGTSFRPEFDRIRWVGGETGDVRFAAWRDARTGYPLVDAAMLQIRQSGYMHNRLR 376

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+TASFL+KDL VDWR GE +F   L D D A+NNGGWQWAAS+G D+ P+FRIFNP  Q
Sbjct: 377 MVTASFLIKDLGVDWRRGEHHFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVTQ 436

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
            ++FDPQG FIR +LP+L  +P +Y+HAP +            L   YP PIV+H
Sbjct: 437 SEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKAAGVALGATYPRPIVEH 491


>gi|85702996|ref|ZP_01034100.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
 gi|85671924|gb|EAQ26781.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
          Length = 473

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 151/484 (31%), Positives = 221/484 (45%), Gaps = 27/484 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T     LVW R DLR+ D+ AL AA       +I VFI         G+ A     +  S
Sbjct: 2   TVKPPILVWFRRDLRLADHPALCAAIE-GGGPIIPVFIHDDSVA---GLGAAPKWRLGLS 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + + L  +G      + S    ++E L +   +     + ++R Y+   + RDK ++
Sbjct: 58  LASLARDLEDRGSRLILRRGS----ALEVLRALVAETGAGAVHWSRLYDPQAIERDKAVK 113

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             L+      +S    V+  P ++       Y+VY+P  +A+    V   LR+       
Sbjct: 114 SALREDGAAAQSHAGHVMFEPWTVETKTGGFYRVYSPMWRAVKDREVAVPLRAPSTILAP 173

Query: 184 LTGPVTP----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              PV+      ++        +   P   +GE  A+  L  F    +  Y + R+ PA+
Sbjct: 174 DMWPVSDGLDDWHMGAAMVRGAEVCLPYQRVGEAAAMDRLHAFTDGAISDYKDARNFPAV 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           + TS LS  L+ G +SPRQCW+  +      L     GA  WL EL+WREF  HLM   P
Sbjct: 234 EATSSLSENLTYGEVSPRQCWHAGQR----ALHAGAQGAEHWLKELVWREFAYHLMYHTP 289

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            +        W +   W+ D+       WKQG TG P +DAAMR++   G MHNR RMI 
Sbjct: 290 HILTDNWRTDW-DAFPWSTDADHPDVIAWKQGRTGEPFVDAAMREMYVTGKMHNRARMIV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+L K L+  W++G ++F   L D D ASN  GWQWAA  G D+ PYFR+FNP  Q ++
Sbjct: 349 ASYLTKHLMTHWKVGLDWFADCLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQLEK 408

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           FD  G + R W+ E    P           P  W   +  + +YP  +VD     +  L 
Sbjct: 409 FDRDGAYTRRWIAEGQGQPQATALDYFKAIPRRWSLSS--TSSYPNRLVDLAGGRNRALA 466

Query: 473 QYYA 476
            Y A
Sbjct: 467 AYEA 470


>gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi]
          Length = 1043

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 121/494 (24%), Positives = 193/494 (39%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL      +      VF+  P       +   +  F+   L  + 
Sbjct: 108 TVHWFRKGLRLHDNPALREGVRGA-TSFRCVFVIDPWFAGSSNVGINKWRFLLQCLDDLD 166

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L +        +        + L     +   T L +    E     RD  + +  + 
Sbjct: 167 RNLRKLNSRLFVIRG----QPADALPKLFKEWSTTCLTFEEDPEPFGRVRDHNISEMCKE 222

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   S     L     I+        +     +A+I ++         +    + G  
Sbjct: 223 LGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPETTITLEAIGGAT 282

Query: 189 TPS--------NIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           TP          +P   +  F+      P++  GE  AL  L +  + K +     R   
Sbjct: 283 TPLYDDHDDKYGVPTLEELGFETEALRPPVWIGGETEALARLERHLERKAWVASFGRPKM 342

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             Q      + LSPYL  G LS R  + +L + +    IK      S   +L+WREF+  
Sbjct: 343 TPQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKACPPLSLHGQLLWREFFYC 400

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+        P   +I W+++S  L  W  G TGFP IDA M QL   GW+H+  
Sbjct: 401 AATKNPTFDKM-AGNPICVQIPWDRNSEALAKWASGQTGFPWIDAIMTQLREEGWIHHLA 459

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 460 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 518

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G++ DP G +IR +LP L N PT++IH P +  +      K  +  +YPLP+V+H  A
Sbjct: 519 KFGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNAPENVQRAAKCLIGKDYPLPMVNHAIA 578

Query: 467 CHHTLNQYYAAKKQ 480
               + +     + 
Sbjct: 579 SRANMERIKQVYQH 592


>gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi]
          Length = 788

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 131/494 (26%), Positives = 196/494 (39%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL     N+      VFI  P       +   +  F+   L  + 
Sbjct: 36  TVHWFRKGLRLHDNPALREGLVNA-TTFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLD 94

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        + L     +   T L +    E     RD  +  + + 
Sbjct: 95  SSLKKLNSRLFVVRG----QPADALPKLFREWGTTALTFEEDPEPYGRVRDHNITTKCRE 150

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I   S     L     I+        +     +ALI ++        P+    L G  
Sbjct: 151 VGINVISRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPQPAEAPISIETLNGAK 210

Query: 189 TPSNI--------PRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           TP ++        P   +  F+  D   PM+  GE  AL  L +  + K +     R   
Sbjct: 211 TPVSVDHDDRFGVPTLEELGFETEDLKPPMWMGGESEALARLDRHLERKAWVASFGRPKM 270

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             Q      + LSPYL  G LS R  + +L E +    IK      S   +++WREF+  
Sbjct: 271 TPQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYKK--IKRVRPPLSLHGQILWREFFYC 328

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+    +   P   +I W K+   L  W  G TG+P IDA M QL   GW+H+  
Sbjct: 329 AATRNPNFDRMEG-NPICVQIPWEKNQEALSKWANGQTGYPWIDAIMIQLREEGWIHHLA 387

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   +LD D + N G W W  S  +    +F  + P 
Sbjct: 388 RHAVACFLTRGDLWISWEEGMKVFDELMLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 446

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G++ DP G FIR ++P L N+PT+YIH P    +      +  +  +YPLP++DH KA
Sbjct: 447 RFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWVAPESVQQAAQCVVGCDYPLPMLDHTKA 506

Query: 467 CHHTLNQYYAAKKQ 480
               L +      Q
Sbjct: 507 SQINLERIKQVYAQ 520


>gi|218245570|ref|YP_002370941.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
 gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
          Length = 488

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 135/499 (27%), Positives = 234/499 (46%), Gaps = 35/499 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISA 55
           M AT      L+W RNDLR+ D++ ++ A     A++I  +     Q++           
Sbjct: 3   MTATK----ILIWYRNDLRLHDHQPMFQAVKQ-KAQIIPFYCFDNRQFKTTSFGFPKTGN 57

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +S F+  S+  ++K+L Q G      +        + +   C +  +  ++++++    
Sbjct: 58  FKSQFLLQSIDNLRKNLQQLGSNLVVRRG----YPEKIIPEICKELAIDAVYFHQEVTSE 113

Query: 116 EVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           E++ +  LEK L Q  V    F  + L  P  +     ++ +++T FRK + +  +    
Sbjct: 114 EIKVETALEKALTQMGVQLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINST 173

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFC--KEK 226
              P     L   +   NIP   +   +  +        F  GE   +  L ++   K +
Sbjct: 174 FPTPKKLPSLPN-LDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNR 232

Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           +  Y E R+ +     +S+ SP+L++G LSPR  +  + +  ++ +       +  + EL
Sbjct: 233 LKDYKETRNEMLGSDYSSKFSPWLALGCLSPRYIYEEVTKYELERV--KNDSTYWLIFEL 290

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WR+++R + A + +       +     + W +D    Q W+ G TG+P++DA MR+L  
Sbjct: 291 LWRDYFRFICAKHGNKVFYSSGLQGL-NLPWKEDWQRFQLWQTGNTGYPLVDANMRELAA 349

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R   ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   
Sbjct: 350 TGFMSNRGRQNVASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARG- 408

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459
           FR FN   Q K +DP+G ++RHWLPEL  +P   IH P              L ++YP P
Sbjct: 409 FRYFNIPKQSKDYDPKGNYLRHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRP 468

Query: 460 IVDHKKACHHTLNQYYAAK 478
           IVD  K+       Y  A+
Sbjct: 469 IVDFFKSIKANEAIYNNAQ 487


>gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus]
          Length = 588

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 202/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALKECIQGADT-IRWVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q LV + +   +P   I  
Sbjct: 116 LATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITS 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T P++  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 DVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHAEASRLNIERMKQIYQQ 490


>gi|162146574|ref|YP_001601033.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785149|emb|CAP54694.1| putative deoxyribodipyrimidine photo-lyase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 463

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 150/469 (31%), Positives = 225/469 (47%), Gaps = 35/469 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A +  +VW R D RI DN AL  A        + + I        H   A    +++ ++
Sbjct: 5   APAPTIVWFREDFRIADNMALLEA-EKRGQPTLCIVILDD----AHLPGAAARWWLHGAI 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + ++L   G      + +        L     +     +F+NR+Y+      D  ++ 
Sbjct: 60  RSLDETLRGMGGALHVFRGAAR----AVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKA 115

Query: 126 RLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---------- 174
            L+ R    +SF  ++L  P S+   ++  YK++T F +A                    
Sbjct: 116 DLRARGLTVRSFPGALLHEPWSVCTRSVAPYKIFTAFWRAACALPAPFPPHPAPERLVFA 175

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
              P+P   +T       +PR  D+    +  M+  GE+ A   L  F +     Y   R
Sbjct: 176 PPPPMPDSLITRHEQDGLLPRHPDW-AGGLRDMWSPGEEEAGDQLSDFLRHDGAGYATAR 234

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D P  + TS+LSP+L  G +SP Q W+             K+    +L EL WR+F   L
Sbjct: 235 DFPGDEATSRLSPFLRFGHVSPAQVWHAATR---------KACPDKFLMELGWRDFAWSL 285

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           + F P +   +   P  + + W  D   L AW++G TG+P++DA MR+L   GWMHNR+R
Sbjct: 286 LFFNPDLAT-RNLRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVR 344

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A TG D+ PYFR+ NP +Q
Sbjct: 345 MVAASFLVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQ 404

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
            ++FDP G +IR W+PEL ++    IHAP     ++  +  YP PIVDH
Sbjct: 405 SRKFDPHGVYIRRWVPELAHLSDDAIHAPW----ESGATHPYPAPIVDH 449


>gi|88855888|ref|ZP_01130550.1| DNA photolyase [marine actinobacterium PHSC20C1]
 gi|88814755|gb|EAR24615.1| DNA photolyase [marine actinobacterium PHSC20C1]
          Length = 476

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 149/484 (30%), Positives = 232/484 (47%), Gaps = 47/484 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VWLRNDLR++DN AL AA    D  ++ V+I          + +    +++ SL  +
Sbjct: 8   PSIVWLRNDLRLSDNPALTAATSE-DRPLVVVYIHDETGDGIRPLGSASKWWLHHSLTAL 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L + G             + + L +   +   T + +NR+Y       D  L+  L+
Sbjct: 67  DAALQKLGGQLTLSHGP----ATQVLPALVDELGATSVHWNRRYT-AARDIDAGLKASLR 121

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            +    +S   ++L  P  I N   + YKV+TP+ +A  +  V+  LR+     +R    
Sbjct: 122 EQGLTVESHQGNLLNEPWHIRNGQGEPYKVFTPYWRAAQERPVRDALRAPTTTTLRWLAG 181

Query: 188 VTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              S+    ++         + +   +  GEQ A + L  F  E++  Y  +RD PA+  
Sbjct: 182 SPASDDIAEWNLLPTRPDWAEGLRETWTPGEQGARNRLESFVTERLADYH-RRDEPAVDA 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           TS LSP+L  G +SP Q W RL+     D+    ++    +L+E+ WREF   L+   P 
Sbjct: 241 TSGLSPHLRFGEISPTQIWQRLRGTGSTDVPNPARNNVAKFLSEIGWREFSTALLFDNPR 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLL------------QAWKQGYTGFPIIDAAMRQLNTIGW 348
           +     + P      W      +            +AW++G TG P++DA MR+L   G 
Sbjct: 301 LATD-SYRPAYNAFPWGYTVDQIGGVDEPAGVSEVEAWRRGRTGIPLVDAGMRELWHTGT 359

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNR+RM+ ASFL+K+LL+DWR GE++F   L+D D ASN   WQW A +G D+ PYFR+
Sbjct: 360 MHNRVRMVVASFLIKNLLIDWRAGEQWFWDTLVDADEASNPANWQWVAGSGADAAPYFRV 419

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           FNP +Q K+FDP G ++  W+PEL                    + NYP PIVD  +   
Sbjct: 420 FNPILQQKKFDPAGEYVARWIPELG-------------------TKNYPEPIVDLAETRR 460

Query: 469 HTLN 472
             L 
Sbjct: 461 EALE 464


>gi|259019315|gb|ACV89993.1| CRY1 [Fragaria vesca]
          Length = 673

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 136/500 (27%), Positives = 229/500 (45%), Gaps = 27/500 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   +     +VW R DLR+ DN AL A        V+A+FI  PE+   +        +
Sbjct: 1   MSGGSG--CSVVWFRRDLRVEDNPALLAGVRAGG--VVALFIWAPEEEGPYYPGRVSRWW 56

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL   G      + +   DS+  L   CL    T+LF+N  Y+   + RD
Sbjct: 57  LKHSLAHLDSSLRSLGTPLITKKST---DSVSSLLEVCLATGATQLFFNHLYDPISLVRD 113

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              ++ L    I  +SF+  +L  P  + +   + +  +  F +  +      +   LP 
Sbjct: 114 HRAKEVLSANGITVRSFNADLLYEPWDVNDVHGRPFTTFDAFWERCLSMPFDPEAPLLPP 173

Query: 180 PAIRL-TGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234
             I        P +   F D   +  + +    +  G  +A   +  F    +  Y   R
Sbjct: 174 KRIISGDASRCPPDTLVFEDESEKGSNALLARAWSPGWSSADKAVTTFINGPLIEYSTNR 233

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREF 290
                  TS LSP+L  G +S R+ ++ ++ + +    +           +L  +  RE+
Sbjct: 234 RKADSNTTSLLSPHLHFGEVSVRKVFHLIRIKQLLWANEGNKAGEESVNLFLKSIGLREY 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R++   +P     +P +   +   W  + +  +AW+QG TG+P++DA MR+L   GW+H
Sbjct: 294 SRYISFNHP-YSHERPLLGHLKFFPWVINQNYFKAWRQGRTGYPLVDAGMRELWATGWLH 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           +R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI N
Sbjct: 353 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGREFDRIDN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  +G + DP G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV  +
Sbjct: 413 PQFEGYKCDPHGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIE 472

Query: 465 KAC---HHTLNQYYAAKKQS 481
            A       L + +  ++ +
Sbjct: 473 AAKSRLQEALTEMWQHERAA 492


>gi|260433957|ref|ZP_05787928.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417785|gb|EEX11044.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 474

 Score =  366 bits (940), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 154/493 (31%), Positives = 233/493 (47%), Gaps = 36/493 (7%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
            +  S  L+W R DLR++D+ AL AA   S   VI VFI          + A     +  
Sbjct: 2   DSKQSPILIWFRQDLRLSDHPALSAAVR-SGRPVIPVFIRDSLV---DDLGAAPKWRLSL 57

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L  + ++L  KG             +++ L +   +    +++++R Y+ + + RD  +
Sbjct: 58  GLAALAQNLEHKGSKLVLRSGP----ALDALKALIDETGAREVYWSRAYDPDAIARDTHI 113

Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +  L    +  KSF   +L  P ++     + ++V+TP  +A+ Q  V +   +      
Sbjct: 114 KSVLTELGLTAKSFPGHLLFEPWTVATKTGKPFRVFTPMWRAVAQRDVPSPDPAPE---- 169

Query: 183 RLTGPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           RL  P          D+            +      GE  A   L  F  E++  Y  QR
Sbjct: 170 RLAAPPLWPASEHLDDWGLGHAMRRGAGIVGQHVQAGETAAEARLDAFM-ERLDAYPAQR 228

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           D  A  GTS LS YL++G + PR  W+R+K       +    GA ++L +L+WREF  HL
Sbjct: 229 DALADDGTSHLSEYLALGEIGPRTVWHRVK----GAALIGSIGADAFLRQLVWREFAYHL 284

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           M   P +     + P  +   WN+D      +AW    TG P++DA +R++   G MHNR
Sbjct: 285 MYHTPHLLTQN-WRPEWDGFPWNEDIETPEVRAWMTARTGIPVVDAGLREMYVTGRMHNR 343

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI AS+L K L+  W+IG ++F   L+D D ASN  GWQW A +G D+ P+FRIFNP 
Sbjct: 344 ARMIVASYLTKHLMTHWKIGMDWFADCLVDWDAASNAMGWQWVAGSGPDASPFFRIFNPQ 403

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKAC 467
            Q ++FDP G ++R W+ E  + P +    Y  A P SW    D +  YP P+VD K   
Sbjct: 404 TQAEKFDPTGAYVRRWVAEGQSDPPKTALSYFEAIPRSWNLSPDDA--YPQPVVDLKVGR 461

Query: 468 HHTLNQYYAAKKQ 480
              L  Y   K Q
Sbjct: 462 ERALAAYEGRKNQ 474


>gi|148238598|ref|YP_001223985.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
 gi|147847137|emb|CAK22688.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
          Length = 492

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 158/500 (31%), Positives = 217/500 (43%), Gaps = 37/500 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFI 61
             S  L W R DLR+ DN  L+AA     A V  V++  P               +  F+
Sbjct: 2   TASRTLFWHRRDLRLADNTGLHAAAALGPA-VTGVYVLDPAIIAPPPELPPMAPARLWFL 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL+++Q+     G            D ++ L           + ++R  E     RD+
Sbjct: 61  VESLVELQQRWRDAGSRLLV----VAGDPVQRLPQLASLLEAAAVVWSRDVEPYARERDR 116

Query: 122 LLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            + + LQ          D +L+ P  +       Y+VY PF +     +  ++  ++  P
Sbjct: 117 QVARALQASGRKVLVDWDQLLVAPELLKTGGGDPYRVYGPFLRNWRGQVELSEPGTVEAP 176

Query: 181 AI--------------------RLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHIL 219
                                 RL              + F+ +D      GE  A   L
Sbjct: 177 TGLIDLDAACLDALQTAAGELGRLCAEGQRDLEQLRSGHGFKGMDLCPCRPGEAAAAGQL 236

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGA 278
             F    +  Y   R+ P   GTS LS  LS+G +SPRQ W   +    +    + +   
Sbjct: 237 AVFADGPLLGYEPDRNFPGTAGTSGLSAALSVGTVSPRQAWCAAQAAKDLARSDEQRQAI 296

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
             W  EL WREFY+  +  +P +  G P+     +  W  +      WK G TG PIIDA
Sbjct: 297 AVWEQELCWREFYQQALFHFPELADG-PYREQWRRFPWENNEDWFDFWKDGQTGMPIIDA 355

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           AMRQLN  GWMHNR RMI ASFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+
Sbjct: 356 AMRQLNETGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASS 415

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           G D  P  RIFNP  Q  +FD  G +IR W+PEL +V T+ +    S          YP 
Sbjct: 416 GMDPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVCTKDL---LSGDIGALERRGYPE 471

Query: 459 PIVDHKKACHHTLNQYYAAK 478
           P+V+HK         Y   K
Sbjct: 472 PLVNHKIQQARFKALYATIK 491


>gi|190573805|ref|YP_001971650.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a]
 gi|190011727|emb|CAQ45346.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a]
          Length = 473

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 152/464 (32%), Positives = 227/464 (48%), Gaps = 15/464 (3%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            +SV LVW R DLR+ DN AL AA  ++   V+ V+I  P +  +    A    + + SL
Sbjct: 2   PVSVALVWFRRDLRLQDNPALQAAL-DAGHDVVPVYIHAPHEEGEWAPGAASDAWRHRSL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +   L  +G            DS+  L     Q     +++NR+YE     RD  +++
Sbjct: 61  AALDADLRTRGSSLVLRSG----DSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKR 116

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP-AIR 183
            L+ + I  +S + S+L  P  I     Q YKV+TP+ + ++ +     L++ P   A  
Sbjct: 117 MLREQGIDAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPEALAPH 176

Query: 184 LTGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               +   ++       +       +  GE  AL  L  F    +  Y EQRD+P   GT
Sbjct: 177 AVDSLALDDLQLAPTLDWDTGFWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGT 236

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP+L  G ++P +  + L+            G   +L +L WR+F  HL+  +P   
Sbjct: 237 SRLSPHLHFGEIAPWRIAHALEGLRSAGTDADIDG---YLRQLGWRDFAYHLLHHFPKTP 293

Query: 303 MGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 P  ++  W   S   L AW++G TG PI+DA +R+L   G+MHNR+RMI AS+L
Sbjct: 294 TDN-LNPRFDRFPWATPSEAQLHAWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYL 352

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L   W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FDPQ
Sbjct: 353 CKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQ 412

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNY-PLPIVDH 463
             +I  W+PEL  +P +   AP    L     +  Y P P+VD 
Sbjct: 413 ARYISRWVPELAALPVKARFAPWQHPLLLATHAPGYPPTPLVDL 456


>gi|37725007|gb|AAO23970.1| cryptochrome 1 [Pisum sativum]
 gi|45935254|gb|AAS79662.1| cryptochrome 1 apoprotein [Pisum sativum]
 gi|45935256|gb|AAS79663.1| cryptochrome 1 apoprotein [Pisum sativum]
          Length = 682

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 142/497 (28%), Positives = 231/497 (46%), Gaps = 27/497 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++    +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++  S
Sbjct: 2   SSGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVGVFIWAPEEEGQYYPGRVSRWWLKNS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L Q+  SL   G      + +   DSI  L         T++F+N  Y+   + RD   +
Sbjct: 60  LSQLDSSLRNLGTPLVTKRST---DSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    +  +S++  +L  P  + +   Q +  +  F +  +          LP P   
Sbjct: 117 EILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLP-PKRI 175

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           + G V+  PS+   F D   ++ + +    +  G  NA   L  F    +  Y   R   
Sbjct: 176 IPGDVSRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293
               TS LSP+L  G +S ++ ++ ++ + V    +           +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 296 ISFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
           +G + DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV+   A 
Sbjct: 415 EGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAT 474

Query: 468 ---HHTLNQYYAAKKQS 481
                 L Q +  +  S
Sbjct: 475 VRLEEALIQMWQLEAAS 491


>gi|194014306|ref|ZP_03052923.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061]
 gi|194013332|gb|EDW22897.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus ATCC 7061]
          Length = 477

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 165/488 (33%), Positives = 250/488 (51%), Gaps = 25/488 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M + ++W R D+R+ D+ AL  A       + K++A++   P  + +  +     HF + 
Sbjct: 1   MEIVVIWFRRDMRLDDHIALSKAITYAKKHEYKLLALYHLDP-FFTEMEMDINNEHF-FQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L    K   +  +          DD +           +  +F+N        RRDK +
Sbjct: 59  NLAHFVKEARESQVYVHLLH----DDVLRAFQQVMEVYDIKAVFFNEDEVGIGQRRDKQV 114

Query: 124 EKRLQHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLP 178
              L+ + I  S + D+ L     IL      Y+V+TP+ ++      Q +++ D     
Sbjct: 115 TDFLEKKGIHVSTWQDTHLHGARDILKADGSHYQVFTPYYQSWRKQEKQPVIKVDKSFFS 174

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                   P++     +  +           IG   A++ L +F ++++  Y E+RDIP+
Sbjct: 175 SEHTICDEPLSQKGNDKLRELIKGCSRKFDQIGSDKAMNTLHQFIQKRLTRYHEKRDIPS 234

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS+LS +L  G +S R  ++ + EE     +    G  +++ EL WR+FY  + A Y
Sbjct: 235 VFGTSKLSRFLKTGTISIRTIFHAIYEEA----LYEDEGRETFIKELAWRDFYHMIYAHY 290

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     K      + ++WN+D  L +AW +G TGFP++DA MRQLN  GWMHNRLRM+TA
Sbjct: 291 PE-MKEKEINSAFQGMKWNEDETLFEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTA 349

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KD L+DWR GE YF  +L+D D ASN GG+QWAAS G D+VPYFRIFNPT Q KRF
Sbjct: 350 SFLTKDYLIDWRKGESYFAKKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPTTQSKRF 409

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           DP G  IR ++PEL  V  ++IH P              L   YPLP VDH++     ++
Sbjct: 410 DPSGELIRKYVPELERVDEKWIHEPSKMPIDEQLKSGCVLGDTYPLPAVDHQERRKKAIS 469

Query: 473 QYYAAKKQ 480
            +  AK+Q
Sbjct: 470 LFEEAKQQ 477


>gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio]
          Length = 606

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 119/494 (24%), Positives = 201/494 (40%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L  +   +D  +  V+I  P       +   +  F+   L  + 
Sbjct: 5   TVHWFRKGLRLHDNPSLRDSIKGAD-NLRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL +        +    D           + ++++L Y    E     RD  + K   +
Sbjct: 64  ASLRKLNSRLFVIRGQPTD----VFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATE 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V         L     I+        +     + LI  +   ++ +  + A  +    
Sbjct: 120 AGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIMGKCS 179

Query: 189 TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           TP +        +P   +  F+       ++P GE  AL  L +  + K +    +R   
Sbjct: 180 TPVSDDHDNKFGVPSLEELGFETEGLSTAVWPGGETEALTRLERHLERKAWVANFERPRM 239

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + +L + +  +  K  + + S   +L+WREF+  
Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSTPSLSLYGQLLWREFFYT 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     + F P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 299 AATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLA 357

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P ++I+ P +  +      K  + ++YP P+V+H +A
Sbjct: 417 GFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 476

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 477 SRINIERMKQIYQQ 490


>gi|20800469|gb|AAB28725.2| flavin-type blue-light photoreceptor [Arabidopsis thaliana]
          Length = 556

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L   
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAAKKQS 481
           +Q +  +  S
Sbjct: 489 SQMWQLEAAS 498


>gi|144897443|emb|CAM74307.1| Deoxyribodipyrimidine photo-lyase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 457

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 151/456 (33%), Positives = 225/456 (49%), Gaps = 32/456 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVWLR DLR+TD+ AL  A       V+  F    +  R  G ++R   +++ SL  +  
Sbjct: 7   LVWLRRDLRLTDHPALTHAAQ--QGPVVLAFCHDDQDGRALGGASR--WWLHHSLAALGD 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +                      +           +++N   +      +  + + L+  
Sbjct: 63  T-----------VTLARGRCEAEIPRLAEACGARAVYWNASADPALSATEARVRQALK-- 109

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +  ++F    L   G++  +A   ++V+TPF +  +           P P +    P  P
Sbjct: 110 IPTETFAGDELFSIGAVRTNAGTPFQVFTPFWRTALALPPPPQPLPRPAPLVLAPCPGLP 169

Query: 191 SNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     D+ ++ +  ++  GE  A   L  F    V  Y   RD+PA  GTS LSP
Sbjct: 170 LAALELMPKLDW-WRGMAELWQPGEAGAAARLADFLDGPVETYQRDRDLPAKPGTSLLSP 228

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L+ G +SPRQ W+  +       + P  G  ++L EL WREF RHL+A  P +    P 
Sbjct: 229 HLAFGEISPRQIWHAARA------LPPGDGIHTFLKELGWREFSRHLLARQPDLAT-IPL 281

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P      W  D   L+ W+ G TG+PIIDA +RQL   GWMHNR+RMI ASFL+KDLL+
Sbjct: 282 RPEFRAFPWRDDPEALRKWQMGRTGYPIIDAGLRQLWQTGWMHNRVRMIVASFLIKDLLI 341

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W+ GE +F   L+D D A+N   WQW A +G D+ P+FRIFNP  QG++FDP GT++R 
Sbjct: 342 PWQAGEAWFWDTLVDADSANNAASWQWVAGSGADAAPFFRIFNPVTQGEKFDPDGTYVRT 401

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           W+PEL ++P  ++H P     K   +  YP P+VDH
Sbjct: 402 WVPELAHLPKAFVHQPW----KMGRAPGYPPPMVDH 433


>gi|6594298|dbj|BAA88424.1| blue light photoreceptor [Adiantum capillus-veneris]
 gi|6594302|dbj|BAA88426.1| blue light photoreceptor [Adiantum capillus-veneris]
          Length = 487

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 131/479 (27%), Positives = 225/479 (46%), Gaps = 26/479 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VWLR DLR+ DN AL  A    +A V+ VF+  PE+  Q         ++  SL Q
Sbjct: 4   STTIVWLRRDLRLDDNPALKEASKIGNA-VVPVFVWVPEEEGQFQQGRMSRWWLKQSLKQ 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-R 126
           + +SL   G      + S+   S++ L    +  + +++F+N  Y+   + RD+ +++  
Sbjct: 63  LAQSLDSLGSPLIIRRSSS---SLQALMDLVIHTQASQVFFNHLYDPISLVRDQRVKEGL 119

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           LQ  +  ++F+  +L  P  + + + + +  +  F    +    +     LP P   L  
Sbjct: 120 LQTGIHVRTFNADLLYEPWQVNDPSGKAFTTFNEFWDKCLNMPEEPHAPLLP-PTRSLLA 178

Query: 187 PVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                      D   +          +   +  G  NA   L  F +  +  Y   + + 
Sbjct: 179 FAGHLPGCTVEDLELENNSEKDSNALLARSWTPGWINAEKALEAFVERHLLQYAANQHMV 238

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293
               TS LSP+L  G LS R+ +  ++ + V    + K         +L  +  R++ R+
Sbjct: 239 DGSTTSFLSPHLHFGELSVRKVFYNVRIKAVQWTKEGKPDGEQSVNLFLRSIGLRDYSRY 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   +P     +  +       W  D  L +AW+QG TG+P++DA MRQ+   GW+HNR+
Sbjct: 299 ICFNFP-FTHERLILQNRRPFPWRVDEGLFKAWRQGRTGYPLVDAGMRQIWATGWLHNRI 357

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R+I +SF VK L + W  G +YF   LLD DL ++  GWQ+ +    D     R+ +  I
Sbjct: 358 RVIVSSFFVKVLQLPWTWGMKYFWDALLDADLENDILGWQYISGGLPDGHELERMDDLQI 417

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466
           +G ++DP+G ++R WLPEL+ +PT++IH P     +       +L  NYP P+V+   A
Sbjct: 418 EGYKYDPRGEYVRKWLPELSRLPTEWIHHPWDAPPRALRAAGVELGSNYPRPLVEFAAA 476


>gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis]
 gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis]
          Length = 570

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 125/503 (24%), Positives = 202/503 (40%), Gaps = 32/503 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+   ++S  + W R  LR+ DN AL AA   +++ V  V+I  P           +  F
Sbjct: 1   MEGKPSVS-SVHWFRKGLRLHDNPALLAALRGANS-VRCVYILDPWFAASSSGGVNRWRF 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL +        +        +       +  V++L +    E     RD
Sbjct: 59  LLQSLEDLDSSLRKLNSRLFVVRG----QPADVFPKLFKEWGVSRLTFEYDSEPFGKERD 114

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL- 177
            ++ K  +   V     +   L     ++          Y  F+  + +  +   L    
Sbjct: 115 AVIMKLAKEAGVEVIVENSHTLYDSDRVIELNGHSPPLTYKRFQAIISRMELPRRLAPSV 174

Query: 178 ------PVPAIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY 228
                    A           +P   +  F + +    ++P GE  AL  L +  + K +
Sbjct: 175 TRQQMEACRAEIKRNHDETYGVPSLEELGFHSENKGPAIWPGGETEALARLDRHLERKAW 234

Query: 229 YYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               +R   +        + LSPYL  G LS R  + RL+E +  +  K      S   +
Sbjct: 235 VANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYYRLQELYQKVK-KNSPPPLSLYGQ 293

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL 
Sbjct: 294 LLWREFFYTAATNNPKFDQMEG-NPICVQIPWDKNPKALAKWTEGKTGFPWIDAIMTQLR 352

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GW+H+  R   A FL + DL   W  G + F   LLD D + N G W W  S      
Sbjct: 353 QEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSCSAFFQ 411

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457
            +F  + P   G+R DP G +++ +LP L   P++YI+ P S  +      K  + ++YP
Sbjct: 412 QFFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYP 471

Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480
            PIV+H +A    + +     +Q
Sbjct: 472 KPIVNHAEASRMNIERMKQTYQQ 494


>gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio]
          Length = 606

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 119/494 (24%), Positives = 201/494 (40%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L  +   +D  +  V+I  P       +   +  F+   L  + 
Sbjct: 5   TVHWFRKGLRLHDNPSLRDSIKGAD-NLRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL +        +    D           + ++++L Y    E     RD  + K   +
Sbjct: 64  ASLRKLNSRLFVIRGQPTD----VFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATE 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V         L     I+        +     + LI  +   ++ +  + A  +    
Sbjct: 120 AGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIMGKCS 179

Query: 189 TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           TP +        +P   +  F+       ++P GE  AL  L +  + K +    +R   
Sbjct: 180 TPVSDDHDNKFGVPSLEELGFETEGLSTAVWPGGETEALTRLERHLERKAWVANFERPRM 239

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + +L + +  +  K  + + S   +L+WREF+  
Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSTPSLSLYGQLLWREFFYT 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     + F P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 299 AATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLA 357

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P ++I+ P +  +      K  + ++YP P+V+H +A
Sbjct: 417 GFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 476

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 477 SRINIERMKQIYQQ 490


>gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus]
 gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus]
          Length = 582

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 122/494 (24%), Positives = 193/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   + A +  ++I  P       +   +  F+  SL  + 
Sbjct: 14  SVHWFRRGLRLHDNPALQAALRGA-ASLRCIYILDPWFAASSAVGINRWRFLLQSLEDLD 72

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +    D           +  VT+L +    E     RD  + K  + 
Sbjct: 73  NSLRKLNSRLFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKE 128

Query: 130 -RVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             V     +   L     I+     +    Y  F+  + +  +     S  V     T  
Sbjct: 129 AGVEVVIENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188

Query: 188 VTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           V                +  F        ++  GE  AL  L K  + K +    +R   
Sbjct: 189 VDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRM 248

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL E +  +  +  +   S   +L+WREF+  
Sbjct: 249 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYT 307

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 308 AATNNPKFDRMEG-NPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 366

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G   F   LLD D + N G W W  S       +F  + P 
Sbjct: 367 RHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 425

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +++ +LP+L   P++YI+ P +  +      K  + ++YP P+V+H + 
Sbjct: 426 GFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 485

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 486 SRLNIERMKQIYQQ 499


>gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio]
 gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio]
          Length = 606

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 119/494 (24%), Positives = 201/494 (40%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L  +   +D  +  V+I  P       +   +  F+   L  + 
Sbjct: 5   TVHWFRKGLRLHDNPSLRDSIKGAD-NLRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL +        +    D           + ++++L Y    E     RD  + K   +
Sbjct: 64  ASLRKLNSRLFVIRGQPTD----VFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATE 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V         L     I+        +     + LI  +   ++ +  + A  +    
Sbjct: 120 AGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIMGKCS 179

Query: 189 TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           TP +        +P   +  F+       ++P GE  AL  L +  + K +    +R   
Sbjct: 180 TPVSDDHDDKFGVPSLEELGFETEGLSTAVWPGGETEALTRLERHLERKAWVANFERPRM 239

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + +L + +  +  K  + + S   +L+WREF+  
Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSTPSLSLYGQLLWREFFYT 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     + F P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 299 AATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGQTGFPWIDAIMTQLRQEGWIHHLA 357

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P ++I+ P +  +      K  + ++YP P+V+H +A
Sbjct: 417 GFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVAKCIIGVHYPKPMVNHAEA 476

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 477 SRINIERMKQIYQQ 490


>gi|91204921|ref|YP_537276.1| deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C]
 gi|91068465|gb|ABE04187.1| Deoxyribodipyrimidine photo-lyase [Rickettsia bellii RML369-C]
          Length = 475

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 155/485 (31%), Positives = 239/485 (49%), Gaps = 32/485 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLL 66
              +VWLR +LR+ DNK+  AA  NSD K++ +FI       +      R+  F+  +L 
Sbjct: 3   KTSIVWLRRNLRLHDNKSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLC 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L +            +   ++ +       ++  ++ +  YE N + RDK +++ 
Sbjct: 62  LINDELKKLKGKLLV----FYGKPLDIIPKLAATLKIENIYADEDYEPNNIERDKKVQEL 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAI 182
           L        + D +L+ P  +L    + YKVYTP+ +A  + +         + L   + 
Sbjct: 118 LGSNCTLNLYCDHLLIKPDRVLTKDNKAYKVYTPYMQAFRKFIADNGSISHNKLLTNYSY 177

Query: 183 RLTGPVTPSNIPRFF--DYPFQAIDPMFPIGE----------QNALHILRKFCKEKVYYY 230
            L G +           D      + +  IG           +NA ++L KF   ++  Y
Sbjct: 178 NLDGKLYTPQDIELKTIDLNIGKSEALKQIGYVYKEDELWQPKNAQNVLDKFITRRINRY 237

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              +D   + GTS +SPYL  G++S R+C+ +              G+ +W+NELIWREF
Sbjct: 238 KIDQDFLYLDGTSTISPYLRFGLVSIRECYRKAFNA------ASNPGSITWINELIWREF 291

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y  ++  +P+    +    +  KI WN        +    TG+PIIDAA++QL   GWMH
Sbjct: 292 YATILYHFPNTVNEEFLEKYKNKIPWNNKKEYFDKFINAETGYPIIDAAVKQLVGDGWMH 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RMI ASF  K+LL+DWR GEE+F   L+D +LASN GGWQWA+S G D+ PYFRIFN
Sbjct: 352 NRARMIVASFFSKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  QGK FDP   +I+ +LP L NV    IH     ++ + +  NYP PIVD+  +    
Sbjct: 412 PYTQGKNFDPDAEYIKKYLPILKNVQPHIIHN----INSHKMYDNYPKPIVDYGLSRAKA 467

Query: 471 LNQYY 475
           +  + 
Sbjct: 468 IEVFK 472


>gi|329764714|ref|ZP_08256309.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329138764|gb|EGG43005.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 451

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 229/470 (48%), Gaps = 26/470 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L   R DLR+ DN  L  A   S+ +VI  FI   +       S  +  F+  SL  + 
Sbjct: 7   TLFIFRRDLRLEDNTGLIYALKTSN-EVIPCFILDTDILDNLKKSRLRIKFLNESLKDLN 65

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L ++    +  +  + +      +   L+ ++  +F N  Y      ++  ++K    
Sbjct: 66  EQLIKRKTNLRIFRGRSEEII----EKIILENKIDGVFLNGDYTKFAQLKENKIKKICNQ 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           + I    F D +L  P  I     + Y VY+ F K      V++ +++           +
Sbjct: 122 KNIGFNKFADYLLHVPDEIHTKEQKPYTVYSYFYKTAKTIPVRSKIKNNFR-----NYSL 176

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                    +   +  + M   G +NAL IL+   +     Y + RD P +  T++LS +
Sbjct: 177 DKIKNDNSLEITIENKEKM-EGGRRNALKILKNISE--YKNYQKTRDYPGLDKTTKLSAH 233

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           +  G +S R+ +  +KE              + +N+L WREF+ +++  +P+    + F 
Sbjct: 234 IRFGTISVREAYQAIKENL--------GIDHTLINQLYWREFFTYVLHHFPN-SKSRTFK 284

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
               KI W+ +      W +G TGFPI+DA MRQLN  G+MHNR+RMI ASFL KD+ +D
Sbjct: 285 KKFRKIPWSTNKQEYHTWCKGETGFPIVDAGMRQLNKTGFMHNRVRMIVASFLTKDMHID 344

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W++GE YF  +L+D D A N G WQWAASTG D+VPYFRIFNP IQ ++FD    +I+ W
Sbjct: 345 WKLGERYFAEKLVDYDPAVNAGNWQWAASTGCDAVPYFRIFNPWIQQEKFDSNCNYIKKW 404

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +PEL  +  +YIH       K    L YP PI++HK   + T   +   K
Sbjct: 405 IPELETLQPKYIHNLWK---KYPEGLTYPKPILNHKIESNKTKIIFKNQK 451


>gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio]
 gi|169158298|emb|CAQ13305.1| cryptochrome 2a [Danio rerio]
          Length = 658

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 200/497 (40%), Gaps = 37/497 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL  A   +D  V  V+   P       +   +  F+   L  + 
Sbjct: 5   SIHWFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L +        +                + ++++L +    E     RD  ++K    
Sbjct: 64  SNLRKLNSRLFVVRG----QPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRLT--- 185
             +      S  L     L+  +++     P      Q L+ + D   +PV  +  +   
Sbjct: 120 AGVEVIVKTSHTLYN---LDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMG 176

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQR 234
             VTP +      Y   +++ +           +P GE  AL  + +  + K +    +R
Sbjct: 177 CCVTPVSEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFER 236

Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
                       + LSPYL  G LS R  + +L + +  +  K  +   S   +L+WREF
Sbjct: 237 PRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KTSTPPLSLYGQLLWREF 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +       P     +   P   +I W+K+   L  W +  TGFP IDA M QL   GW+H
Sbjct: 296 FYTAATTNPRFDKMEG-NPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIH 354

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  +
Sbjct: 355 HLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCY 413

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463
            P   G+R DP G FIR +LP L   P +YI+ P +  D      K  + ++YP P+V+H
Sbjct: 414 CPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNH 473

Query: 464 KKACHHTLNQYYAAKKQ 480
            +A    + +     +Q
Sbjct: 474 AEASRLNIERMKQIYQQ 490


>gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis]
          Length = 570

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 126/507 (24%), Positives = 207/507 (40%), Gaps = 40/507 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+   ++S  + W R  LR+ DN AL AA   +++ V  V+I  P           +  F
Sbjct: 1   MEGKPSVS-SVHWFRKGLRLHDNPALLAALRGANS-VRCVYILDPWFAASSSGGVNRWRF 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL +        +        +       +  V++L +    E     RD
Sbjct: 59  LLQSLEDLDSSLRKLNSRLFVVRG----QPADVFPKLFKEWGVSRLTFEYDSEPFGKERD 114

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLP 178
            ++ K  +   V     +   L     ++    ++     P      Q ++ + +L   P
Sbjct: 115 AVIMKLAKEAGVEVIVENSHTLYDLDRVI----ELNGHSPPLTYKRFQAIISRMELPRRP 170

Query: 179 VPAIRLT-----------GPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCK 224
            P++                     +P   +  F + +    ++P GE  AL  L +  +
Sbjct: 171 APSVTRQQMEACRAEIKRNHDETYGVPSLEELGFHSENKGHAIWPGGETEALARLDRHLE 230

Query: 225 EKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            K +    +R   +        + LSPYL  G LS R  + RL+E +  +  K      S
Sbjct: 231 RKAWVANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYYRLQELYQKVK-KNSPPPLS 289

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
              +L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M
Sbjct: 290 LYGQLLWREFFYTAATNNPKFDQMEG-NPICVQIPWDKNPKALAKWTEGKTGFPWIDAIM 348

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL   W  G + F   LLD D + N G W W  S  
Sbjct: 349 TQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSCS 407

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453
                +F  + P   G+R DP G +++ +LP L   P++YI+ P S  +      K  + 
Sbjct: 408 AFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIG 467

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           ++YP PIV+H +A    + +     +Q
Sbjct: 468 IDYPKPIVNHAEASRMNIERMKQTYQQ 494


>gi|169158299|emb|CAQ13306.1| cryptochrome 2a [Danio rerio]
          Length = 659

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 200/497 (40%), Gaps = 37/497 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL  A   +D  V  V+   P       +   +  F+   L  + 
Sbjct: 5   SIHWFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L +        +                + ++++L +    E     RD  ++K    
Sbjct: 64  SNLRKLNSRLFVVRG----QPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRLT--- 185
             +      S  L     L+  +++     P      Q L+ + D   +PV  +  +   
Sbjct: 120 AGVEVIVKTSHTLYN---LDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMG 176

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQR 234
             VTP +      Y   +++ +           +P GE  AL  + +  + K +    +R
Sbjct: 177 CCVTPVSEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFER 236

Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
                       + LSPYL  G LS R  + +L + +  +  K  +   S   +L+WREF
Sbjct: 237 PRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KTSTPPLSLYGQLLWREF 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +       P     +   P   +I W+K+   L  W +  TGFP IDA M QL   GW+H
Sbjct: 296 FYTAATTNPRFDKMEG-NPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIH 354

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  +
Sbjct: 355 HLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCY 413

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463
            P   G+R DP G FIR +LP L   P +YI+ P +  D      K  + ++YP P+V+H
Sbjct: 414 CPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNH 473

Query: 464 KKACHHTLNQYYAAKKQ 480
            +A    + +     +Q
Sbjct: 474 AEASRLNIERMKQIYQQ 490


>gi|53725670|ref|YP_102418.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344]
 gi|52429093|gb|AAU49686.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344]
          Length = 497

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 151/494 (30%), Positives = 239/494 (48%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW  +DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 12  LSSSISIAPAVVWFCDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 69

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    ++L                D  + + S+        ++++R+Y +     D
Sbjct: 70  LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 125

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 126 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 185

Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230
                  P   +      D    +   P +  G        E  A   LR F   ++  Y
Sbjct: 186 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 245

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+EL WREF
Sbjct: 246 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 304

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 305 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 363

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 364 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 423

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P +            L   YPLPIV + 
Sbjct: 424 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYD 483

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 484 AARRRALDAFGAIR 497


>gi|124383478|ref|YP_001028857.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229]
 gi|254357787|ref|ZP_04974060.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280]
 gi|124291498|gb|ABN00767.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229]
 gi|148026914|gb|EDK84935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280]
          Length = 534

 Score =  365 bits (937), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 151/494 (30%), Positives = 239/494 (48%), Gaps = 24/494 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW  +DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 49  LSSSISIAPAVVWFCDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 106

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    ++L                D  + + S+        ++++R+Y +     D
Sbjct: 107 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A     P 
Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAPR 222

Query: 180 PAIRLTGPVTPSNIPRFFD-YPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYY 230
                  P   +      D    +   P +  G        E  A   LR F   ++  Y
Sbjct: 223 RLNGGALPAALARQCVALDALGLEPTGPDWAGGLRDAWRFGEDAAHRRLRAFVDSRLGGY 282

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +RD P I  TS+LSPY+  G LS RQ W+   + +       ++    +L+EL WREF
Sbjct: 283 AAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHGAAT-QADLDKFLSELGWREF 341

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               +  +P +   +      + + W  D   L AW++G TG+P +DA MR+L   GWMH
Sbjct: 342 GWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMH 400

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN   WQW A  G D+ PYFRIFN
Sbjct: 401 NRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFN 460

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHK 464
           P  QG++FDP G ++R W+PEL  +P   IH P +            L   YPLPIV + 
Sbjct: 461 PVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYD 520

Query: 465 KACHHTLNQYYAAK 478
            A    L+ + A +
Sbjct: 521 AARRRALDAFGAIR 534


>gi|229488858|ref|ZP_04382724.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121]
 gi|229324362|gb|EEN90117.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis SK121]
          Length = 448

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 146/475 (30%), Positives = 230/475 (48%), Gaps = 31/475 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  ++W R DLR+ D   L AA  ++  + + +F+   +        + + + ++A+L 
Sbjct: 1   MSNSVIWFRRDLRVGDLPTLTAAA-DAGGQTLGLFVLDEKLLG--PAGSPRQNQLFANLS 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  + +V +        D  + +          ++  +  Y     RRD  +   
Sbjct: 58  ALDNQLDGRLMVVR-------GDPADVVPRVAESVGAEEVHISADYGPYGRRRDAAVA-- 108

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              +V   +      + PG +       YKV+TP+ +  +++  +    S  V  +R   
Sbjct: 109 --EKVELIATGSPYAVAPGRVTKADGDPYKVFTPYFRQWMEHGWRGPA-STDVGTVRWFD 165

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P      PR    P  +      +GE  AL   +++C+  +  Y ++R+ P +  TS++S
Sbjct: 166 PSEKDGGPRRVSIPAPSGTVSDVVGEAGALEQWKEYCENDLDRYDDERNRPDLDTTSRMS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L  G + PR           DL  +   GA ++  +L WR+FY  ++   P     K 
Sbjct: 226 IPLKYGTIHPRTML-------ADLSKRLGDGAQAYRRQLAWRDFYADILFQRPDSAR-KN 277

Query: 307 FIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +    +++  +          AW +G TGFPI+DA MRQL    WMHNR+RMI ASFLVK
Sbjct: 278 YDDKFDRLRHDGGVDADAAFTAWCEGKTGFPIVDAGMRQLAAENWMHNRVRMIVASFLVK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G  YFMSQL+DGDLASN  GWQW A +G D+ P+FR+FNP  QG++FDP GT
Sbjct: 338 DLHIPWWRGARYFMSQLVDGDLASNQHGWQWTAGSGTDASPFFRVFNPITQGEKFDPDGT 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++R W+PEL +VP + +H       K    ++YP PIVDH       L +Y   K
Sbjct: 398 YVRRWVPELRDVPGKAVH-----SLKAMRPVDYPDPIVDHAHEREEALRRYGEIK 447


>gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta]
          Length = 593

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 124/494 (25%), Positives = 195/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 24  SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  VT+L +    E     RD  + K  + 
Sbjct: 83  TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138

Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180
             V   + +   L     I+    Q     Y  F+  + +  +           +     
Sbjct: 139 AGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 198

Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           A           +P   +  F  + + P  +  GE  AL  L K  + K +    +R   
Sbjct: 199 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+  
Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 317

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 318 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W  S       +F  + P 
Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 435

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 436 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 496 SRLNIERMKQIYQQ 509


>gi|118572251|sp|Q8QG60|CRY2_CHICK RecName: Full=Cryptochrome-2
          Length = 582

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 122/494 (24%), Positives = 193/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   + A +  ++I  P       +   +  F+  SL  + 
Sbjct: 14  SVHWFRRGLRLHDNPALQAALRGA-ASLRCIYILDPWFAASSAVGINRWRFLLQSLEDLD 72

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +    D           +  VT+L +    E     RD  + K  + 
Sbjct: 73  NSLRKLNSRLFVVRGQPTD----VFPRLFKEWGVTRLAFEYDSEPFGKERDAAIIKLAKE 128

Query: 130 -RVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             V     +   L     I+     +    Y  F+  + +  +     S  V     T  
Sbjct: 129 AGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188

Query: 188 VTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           V                +  F        ++  GE  AL  L K  + K +    +R   
Sbjct: 189 VDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRM 248

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL E +  +  +  +   S   +L+WREF+  
Sbjct: 249 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYT 307

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 308 AATNNPKFDRMEG-NPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 366

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G   F   LLD D + N G W W  S       +F  + P 
Sbjct: 367 RHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 425

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +++ +LP+L   P++YI+ P +  +      K  + ++YP P+V+H + 
Sbjct: 426 GFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAET 485

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 486 SRLNIERMKQIYQQ 499


>gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio]
 gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio]
          Length = 655

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 199/497 (40%), Gaps = 37/497 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL  A   +D  V  V+   P       +   +  F+   L  + 
Sbjct: 5   SIHWFRKGLRLHDNPALQEAVRGADT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLDDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L +        +                + ++++L +    E     RD  ++K    
Sbjct: 64  SNLRKLNSRLFVVRG----QPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRLT--- 185
             +      S  L     L+  +++     P      Q L+ + D   +PV  +  +   
Sbjct: 120 AGVEVIVKTSHTLYN---LDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMG 176

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQR 234
             VTP        Y   +++ +           +P GE  AL  + +  + K +    +R
Sbjct: 177 CCVTPVAEDHGDKYGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFER 236

Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
                       + LSPYL  G LS R  + +L + +  +  K  +   S   +L+WREF
Sbjct: 237 PRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KTSTPPLSLYGQLLWREF 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +       P     +   P   +I W+K+   L  W +  TGFP IDA M QL   GW+H
Sbjct: 296 FYTAATTNPRFDKMEG-NPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIH 354

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  +
Sbjct: 355 HLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCY 413

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463
            P   G+R DP G FIR +LP L   P +YI+ P +  D      K  + ++YP P+V+H
Sbjct: 414 CPVGFGRRTDPNGDFIRRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNH 473

Query: 464 KKACHHTLNQYYAAKKQ 480
            +A    + +     +Q
Sbjct: 474 AEASRLNIERMKQIYQQ 490


>gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis]
          Length = 557

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 127/497 (25%), Positives = 203/497 (40%), Gaps = 37/497 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA  ++   V  V+I  P           +  F+  SL  + 
Sbjct: 3   SVHWFRKGLRLHDNPALSAALRDA-TSVRCVYILDPWFAASSSGGVNRWRFLLQSLEDLD 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  V++L +    E     RD ++ K  + 
Sbjct: 62  TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKE 117

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI---RLT 185
             +    ++S  L     L+  +++     P      Q ++ + +L   P P++   ++ 
Sbjct: 118 AGVEVIVENSHTLY---DLDRIIELNGHSPPLTYKRFQAIISRMELPRRPAPSVTRQQME 174

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQR 234
                        Y   ++D +           +P GE  AL  L +  + K +    +R
Sbjct: 175 ACRAEIKRNHDETYGVPSLDELGFHSEIKGPSIWPGGETEALARLDRHLERKAWVANYER 234

Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
                       + LSPYL  G LS R  + RLKE +  +  K      S   +L+WREF
Sbjct: 235 PRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLKELYKKVK-KNSPPPLSLYGQLLWREF 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H
Sbjct: 294 FYTAATNNPKFDQMEG-NPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEGWIH 352

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL   W  G + F   LLD D + N G W W  S       +F  +
Sbjct: 353 HLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCY 411

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463
            P   G+R DP G ++R +LP L   P++YI+ P S  +      K  + ++YP PIV+H
Sbjct: 412 CPVGFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYPKPIVNH 471

Query: 464 KKACHHTLNQYYAAKKQ 480
            +A    + +     +Q
Sbjct: 472 AEASRMNIERMKQTYQQ 488


>gi|257058615|ref|YP_003136503.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
 gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
          Length = 488

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 133/499 (26%), Positives = 232/499 (46%), Gaps = 35/499 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISA 55
           M AT      L+W RNDLR+ D++ ++ A     A++I  +      ++           
Sbjct: 3   MTATK----ILIWYRNDLRLHDHQPMFQAVKK-KAQIIPFYCFDDRHFKTTSFGFPKTGN 57

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +S F+  S+  ++K+L Q G      +        + +   C +  +  ++++++    
Sbjct: 58  FRSQFLLQSIDNLRKNLQQLGSNLVIRRG----YPEKIIPEICQELAIDAVYFHQEVTSE 113

Query: 116 EVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           E++ +  LEK L Q  V    F  + L  P  +     ++ +++T FRK + +  +    
Sbjct: 114 EIKVETALEKALTQMGVKLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINST 173

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFC--KEK 226
              P     L   +   NIP   +   +  +        F  GE   +  L ++   K +
Sbjct: 174 FPTPKKLPSLPN-LDLGNIPTLAELGLETPEFDSRGVLEFIGGESEGIKRLNQYFWQKNR 232

Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           +  Y E R+ +     +S+ SP+L++G LSPR  +  + +  ++ +       +  + EL
Sbjct: 233 LKDYKETRNGMLGSDYSSKFSPWLALGCLSPRYIYEEVTKYELERV--KNDSTYWLIFEL 290

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WR+++R + A + +       +     + W +D    Q W+ G TG+P++DA M +L  
Sbjct: 291 LWRDYFRFICAKHGNKVFYSSGLQGF-NLPWKEDWQRFQLWQTGNTGYPLVDANMTELAA 349

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R   ASFL K+L ++W +G E+F S L+D D+ SN G W + A  GND+   
Sbjct: 350 TGFMSNRGRQNVASFLTKNLGINWLMGAEWFESVLIDYDVCSNYGNWNYTAGVGNDARG- 408

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459
           FR FN   Q K +DP+G ++RHWLPEL  +P   IH P              L ++YP P
Sbjct: 409 FRYFNIPKQSKDYDPKGNYLRHWLPELKTIPGDKIHEPWKLSQAEQKQYRVNLGVDYPRP 468

Query: 460 IVDHKKACHHTLNQYYAAK 478
           IVD  K+       Y  A+
Sbjct: 469 IVDFFKSIKANEAIYNNAQ 487


>gi|284052713|ref|ZP_06382923.1| DNA photolyase [Arthrospira platensis str. Paraca]
 gi|291567701|dbj|BAI89973.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
          Length = 490

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 126/490 (25%), Positives = 227/490 (46%), Gaps = 31/490 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           ++W RNDLR+ D++ L  A  ++  ++I ++   P Q+ +           +  F+  S+
Sbjct: 9   ILWYRNDLRLHDHEPLDLAT-STQGQIIPLYCFDPRQFAKTSFGFPKTGGFRGKFLLESV 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ +  + G            +    +     Q  +  ++Y+++    E+  +  LEK
Sbjct: 68  ADLRHNFQKIGSNLLVR----IGEPERVIFDLVKQLNIDAVYYHKEVTAEELAVETALEK 123

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    V  KSF  + L     +     ++ +++T FRK + Q  V     + P    + 
Sbjct: 124 ALTPLGVEVKSFWGATLYHLKELPFPIEKLPELFTNFRKQVEQKSVIYPPYTPPNQLPQF 183

Query: 185 TGPVTPSNIPRFFDYPF------QAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRD- 235
              + P  IP   +         +     F  GE   L  L  +   +     Y + R+ 
Sbjct: 184 PD-IEPGEIPTLTELGITPAPFDERSVLDFAGGETAGLSRLNDYFWRRDCLKNYKQTRNG 242

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ SP+L+ G LSPR  + ++++     +       +  + EL+WR+++R + 
Sbjct: 243 MLGSDYSSKFSPWLANGCLSPRWIYQQVQDYQHQRV--KNDSTYWLVFELLWRDYFRFIC 300

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +      K  +    KI W ++    Q W QG TGFP++DA MR+L   G+M NR R 
Sbjct: 301 LKHGPKVFYKSGLQGV-KIPWGENWEQWQIWCQGLTGFPLVDANMRELAATGFMSNRGRQ 359

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL K+L ++W++G E+F S L+D D+ SN G W + A  GND    FR FN   Q 
Sbjct: 360 NVASFLTKNLGINWQMGAEWFESVLIDYDVCSNWGNWNYTAGVGNDGRG-FRYFNIAKQS 418

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHH 469
           + +DP G +++HWLPEL ++P   +H+P    ++  +       ++YP P+VD +++   
Sbjct: 419 QDYDPMGDYVKHWLPELASIPDGRVHSPWRLSNQEQIRFGVRLGVDYPYPMVDLQESVEA 478

Query: 470 TLNQYYAAKK 479
               Y  A +
Sbjct: 479 NRRIYEKALR 488


>gi|89891446|ref|ZP_01202951.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
 gi|89516220|gb|EAS18882.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
          Length = 440

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 150/481 (31%), Positives = 224/481 (46%), Gaps = 53/481 (11%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  V++ W R D+R+ DN     A   SD  V+ +FI   E          +  FIY  L
Sbjct: 2   SKKVNIFWFRRDMRLDDNVGFLEALK-SDYPVLPIFIFDKEILDHLPEDDARVTFIYEEL 60

Query: 66  LQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
            +++ +L +              +   E +D+Y     V  +F NR YE     RD  L 
Sbjct: 61  QRMRNNLQENHDSSLATFYGKPLNIWQEIIDNY----EVNAVFTNRDYEPYAQERDLKLT 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPV 179
               +  V   +F D V+     I+      Y VYTP++   ++N  +     D  ++  
Sbjct: 117 SFFNEQNVAFHTFKDQVIYEKDDIVKDDGDPYVVYTPYKNKWLENFRKDYGKADNLTIHY 176

Query: 180 PAIRLTGPVTPSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
               L   +  S +P     D  F+      P  E N    L       +  Y + R+ P
Sbjct: 177 TNDYLDNCIKNSRLPNLNLSDIGFKKSSIEIP--EYNITPTL-------IEDYEKTRNYP 227

Query: 238 AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           A++ GTS+L  YL  GV+S R+   +             +   ++++ELIWREF+  ++ 
Sbjct: 228 AMENGTSRLGVYLRFGVVSIRKMMKKA----------DLANEKTFMSELIWREFFMTILY 277

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P   +   F    ++IEW  +    + WK G TG+ I+DA MR+LNT G+MHNR+RM+
Sbjct: 278 HFPH-TVDNAFRSKYDRIEWRNNESEFEKWKNGQTGYAIVDAGMRELNTTGYMHNRVRML 336

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL K LL+DWR GE YF  +LLD DL++N G WQWAA +G D+ PYFRIFNP  Q  
Sbjct: 337 VASFLCKHLLIDWRWGERYFAEKLLDFDLSANVGNWQWAAGSGVDAAPYFRIFNPITQKD 396

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FD    +I+ W+PE                     + +Y   +VDHK+A    L  Y  
Sbjct: 397 KFDKNYKYIKQWVPEFE-------------------TDDYVEKMVDHKEARERCLKTYKE 437

Query: 477 A 477
           A
Sbjct: 438 A 438


>gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis]
          Length = 586

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 126/498 (25%), Positives = 201/498 (40%), Gaps = 39/498 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA  +    V  ++I  P       +   +  F+  SL  + 
Sbjct: 12  SVHWFRRGLRLHDNPALQAAIRDG-GPVRCIYILDPWFAASSSVGINRWRFLLQSLEDLD 70

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL + G      +    D           + RVT+L +    E     RD  + K  + 
Sbjct: 71  NSLRKLGSRLFVVRGQPTD----VFPRLFKEWRVTRLTFEYDSEPFGKERDAAIVKLAKE 126

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI----- 182
             V   + +   L      L+  +++     P      Q ++ + DL   PV +I     
Sbjct: 127 AGVEVITENSHTLYD----LDRIIELNGHKPPLTYKRFQTIISRMDLPKKPVASITHQQM 182

Query: 183 ------RLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                           +P   +  F        ++  GE  AL  L K  + K +    +
Sbjct: 183 EMCKTEIQDNHDETYGVPSLEELGFPTESLAPAVWLGGETEALTRLDKHLERKAWVANYE 242

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R            + LSPYL  G LS R  + RL E +  +  +  +   S   +L+WRE
Sbjct: 243 RPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWRE 301

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+
Sbjct: 302 FFYTAATNNPKFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWI 360

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G   F   LLD D + N+G W W  S       +F  
Sbjct: 361 HHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNSGSWMW-LSCSAFFQQFFHC 419

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
           + P   G+R DP G ++R +LP+L   P++YI+ P +  +      K  + ++YP P+V+
Sbjct: 420 YCPVGFGRRTDPSGDYVRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVN 479

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H +     + +     +Q
Sbjct: 480 HAETSRLNIERMKQIYQQ 497


>gi|85374236|ref|YP_458298.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594]
 gi|84787319|gb|ABC63501.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594]
          Length = 463

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 153/482 (31%), Positives = 237/482 (49%), Gaps = 33/482 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              +VWLR DLR+ DN ALY A       V+AV++   E+ + H +      +++ SL  
Sbjct: 3   KPQIVWLRRDLRMADNPALYHAAKAG--PVVAVYVLDDERPKDHKLGGAARWWLHHSLES 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + KS   +       +     D++E L +         +  NR YE       +  +  L
Sbjct: 61  LGKSFGARNSRIVLRRG----DAVEELKTVANAVGAETVHANRHYEPW----WRKAQGEL 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  K +D + L PPG +   +   YK+YTPF KA++Q +   D    P         
Sbjct: 113 AEELELKLYDGNYLFPPGHVTTGSGDPYKIYTPFSKAMLQEMPPRDEVPEPETLSSPGEW 172

Query: 188 VTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               ++  +   P +      +   + +GE  A   L  +  ++V  Y + R++P++  T
Sbjct: 173 PASDDLGDWNLLPTKPDWAGGLRDFWTVGEDAAHERLD-WWSDEVDKYDDGRNMPSVDET 231

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           SQ+SP+L  G +SP Q W+R K+       K   G  ++  ELIWR++ ++++  +P+  
Sbjct: 232 SQMSPHLHHGEISPVQIWHRFKD-------KRSDGWKTYEKELIWRDYAQNVICQFPAYP 284

Query: 303 MGKPFIPWTEKIEWNKD------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                  W   + W            L+ W++G TG+PI+DA MRQL   GWMHNR+RMI
Sbjct: 285 KESYRDGWDADMAWRNPNRGHIIQEELKRWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMI 344

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+K LL+DWR GE++F   L+D D ASN   WQW + TG DS  + RI  P  Q +
Sbjct: 345 AASFLIKHLLIDWRHGEKWFWDTLVDADYASNGTNWQWVSGTGVDSNMFSRIMAPLTQSE 404

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FD  G +IR ++PEL ++P + IH P     K D   +YP  I+ HK+     L  Y  
Sbjct: 405 KFDAAG-YIREYVPELADLPDETIHDPEEHGCKPD---DYPSKIIAHKEGRERALEAYSE 460

Query: 477 AK 478
            K
Sbjct: 461 FK 462


>gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis]
 gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis]
          Length = 568

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 126/507 (24%), Positives = 205/507 (40%), Gaps = 40/507 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+   ++S  + W R  LR+ DN AL +A   +++ V  V+I  P           +  F
Sbjct: 1   MEGKPSVS-SVHWFRKGLRLHDNPALLSALRGANS-VRCVYILDPWFAASSSGGVNRWRF 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL +        +        +       +  V++L +    E     RD
Sbjct: 59  LLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVSRLTFEYDSEPFGKERD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLP 178
            ++ K  +   +     +   L      L+  +++     P      Q ++ + ++   P
Sbjct: 115 AVIMKLAKEGGVEVVVENSHTLYD----LDRIIELNGHSPPLTYKRFQAIISRMEIPRRP 170

Query: 179 VPAIRLT-----------GPVTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCK 224
            P++                     +P   +  F        ++P GE  AL  L +  +
Sbjct: 171 APSVTRQQMEACRAEIKRNHDETYGVPSLEELGFHRENKGSAIWPGGETEALARLDRHLE 230

Query: 225 EKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            K +    +R            + LSPYL  G LS +  + RL+E +  +  K      S
Sbjct: 231 RKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCKLFYYRLQELYRKVK-KNNPPPLS 289

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
              +L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M
Sbjct: 290 LFGQLLWREFFYTAATNNPKFDQMEG-NPICVQIPWDKNPKALAKWAEGKTGFPWIDAIM 348

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL   W  G + F   LLD D + N G W W  S  
Sbjct: 349 TQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSCS 407

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453
                +F  + P   G+R DP G FIR +LP L   P++YI+ P S  +      K  + 
Sbjct: 408 AFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPVLKAFPSRYIYEPWSAPESVQKQAKCIIG 467

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           ++YP PIV+H +A    + +     +Q
Sbjct: 468 IDYPKPIVNHAEASSMNIERMKQTYQQ 494


>gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2-like [Sus scrofa]
          Length = 594

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 123/494 (24%), Positives = 196/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 25  SVHWFRKGLRLHDNPALLAAVRGAHC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 83

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +   +   +  VT+L +    E     RD  + K  + 
Sbjct: 84  TSLRKLNSRLFVVRG----QPADVFPALFQEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 139

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +ALI  +         V + ++    
Sbjct: 140 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQALISRMELPKKPVGSVTSQQMESCR 199

Query: 189 TPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++ +           +  GE  AL  L K  + K +    +R   
Sbjct: 200 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 259

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+  
Sbjct: 260 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 318

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 319 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 377

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W  S       +F  + P 
Sbjct: 378 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 436

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 437 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAET 496

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 497 SRLNIERMKQIYQQ 510


>gi|149202510|ref|ZP_01879482.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
 gi|149143792|gb|EDM31826.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
          Length = 473

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 156/484 (32%), Positives = 226/484 (46%), Gaps = 27/484 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T ++  +VWLR DLR+ D+ AL AA     A VI VFI          + A     +  S
Sbjct: 2   TDIAPSIVWLRRDLRLADHPALCAALAGGGA-VIPVFIHDESVEA---LGAAPKWRLGLS 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + + L+  G      + +    +++ L +   +     + ++R Y+   + RDK ++
Sbjct: 58  LASLARDLAACGSRLILRRGA----ALDVLRALVAETGAGAVHWSRLYDPQSIARDKAVK 113

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVP 180
             L+   +  +S    V+  P ++       Y+VY+P  +A+    V   L +   +P P
Sbjct: 114 SALREAGVDAQSHPGHVMFEPWTVETKTGGFYRVYSPMWRAVKDRDVAVPLTAPGQIPAP 173

Query: 181 AIRLTGPVTPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +                Y       P   +GE  A+  L  F    +  Y + R+ PA+
Sbjct: 174 KVWPASDSLDDWQMGAAMYRGADVCLPYQRVGEAAAMERLHAFADGAIAEYQDARNFPAV 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS  L+ G +SPRQCW+  +      L     GA +WL EL+WREF  HLM   P
Sbjct: 234 DATSALSENLTYGEISPRQCWHAGQR----ALHGGAKGAETWLKELVWREFAYHLMYHTP 289

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            +  G     W +   W+ D+   +   WKQG TG P +DAAMR++   G MHNR RMI 
Sbjct: 290 HILSGNWRTDW-DAFPWSTDADHPEVIAWKQGRTGEPFVDAAMREMYVTGKMHNRARMIV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+L K L+  W+IG ++F   L D D ASN  GWQWAA  G D+ PYFR+FNP  Q  +
Sbjct: 349 ASYLTKHLMTHWKIGLDWFAECLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQLDK 408

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           FD  G + R W+ E    P           P +W    D S+ YP  IVD  +     LN
Sbjct: 409 FDRGGAYTRRWIAEGQRTPPATALDYFKAVPRAWQL--DPSMLYPGRIVDLSQGRQRALN 466

Query: 473 QYYA 476
            Y A
Sbjct: 467 AYEA 470


>gi|45935258|gb|AAS79664.1| mutant cryptochrome 1-1 protein [Pisum sativum]
          Length = 682

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 141/497 (28%), Positives = 230/497 (46%), Gaps = 27/497 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++    +VW R DLR+ DN AL A        V+ VFI  PE+  Q+        ++  S
Sbjct: 2   SSGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVGVFIWAPEEEGQYYPGRVSRWWLKNS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L Q+  SL   G      + +   DSI  L         T++F+N  Y+   + RD   +
Sbjct: 60  LSQLDSSLRNLGTPLVTKRST---DSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    +  +S++  +L  P  + +   Q +  +  F +  +          LP P   
Sbjct: 117 EILTAQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLP-PKRI 175

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           + G V+  PS+   F D   ++ + +    +  G  NA   L  F    +  Y   R   
Sbjct: 176 IPGDVSRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKA 235

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293
               TS LSP+L    +S ++ ++ ++ + V    +           +L  +  RE+ R+
Sbjct: 236 DSATTSFLSPHLHFEEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRY 295

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 296 ISFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 414

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
           +G + DP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV+   A 
Sbjct: 415 EGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAT 474

Query: 468 ---HHTLNQYYAAKKQS 481
                 L Q +  +  S
Sbjct: 475 VRLEEALIQMWQLEAAS 491


>gi|288919996|ref|ZP_06414317.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
 gi|288348649|gb|EFC82905.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
          Length = 472

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 148/474 (31%), Positives = 215/474 (45%), Gaps = 19/474 (4%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           WLR DLR+ DN AL AA       V+A+F+      R       +  F+Y  L  + + L
Sbjct: 3   WLRRDLRLDDNPALIAAA--GQGPVLALFVLDEALCR--PAGPVRLAFLYRCLRDLDRRL 58

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV- 131
           + +        C    D  + + +   +     +     +     RRD+ + + L     
Sbjct: 59  AGRL-------CVRAGDPEQVVPAVAGEIGADVVHIAADHGPYGRRRDERVARALLAGGR 111

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
             +    +  + PG ++      Y+V+TPF +A   +     +   P     L       
Sbjct: 112 ELRRTGSAYAVEPGRLVKPDGSPYRVFTPFYRAWKAHGWPEPVAPAPTEPDWLDPASLSG 171

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
                   P      + P GEQ A   L  F +  +  Y   RD PA   TS+LSPYL  
Sbjct: 172 GSEEIPPDPVLDGVTLPPPGEQAAHDRLHAFLRGPLGDYARHRDEPAADVTSRLSPYLKW 231

Query: 252 GVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           G + PR   + ++                 A  + +E+ WREFY  ++A  PS       
Sbjct: 232 GCIHPRTVLDGVRTATAPSTDGATDGATEAAEKFRSEIAWREFYADVLAANPSSARS-DL 290

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                ++ +       +AWK G TG+PI+DA MRQL   GW+HNR+RMI ASF+ KDL V
Sbjct: 291 SETLARMSYEPPGESFEAWKWGRTGYPIVDAGMRQLLAEGWVHNRVRMIEASFVCKDLHV 350

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W  G  +++ +L+DGDLASNN GWQW A TG D+ PYFR+FNP  QG+RFDP G +IR 
Sbjct: 351 HWAHGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFRVFNPVSQGRRFDPDGEYIRR 410

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           W+PEL  +P + +H P               PIVDH       L ++  A+  S
Sbjct: 411 WVPELRGLPAELVHEPWKCPGGPPNGYP--GPIVDHAVERRDALARHAQARNAS 462


>gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti]
 gi|108871687|gb|EAT35912.1| DNA photolyase [Aedes aegypti]
          Length = 820

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 121/493 (24%), Positives = 193/493 (39%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL     ++      VF+  P       +   +  F+   L  + +
Sbjct: 47  VHWFRKGLRLHDNPALREGLKDA-VSFRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLDR 105

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
           +L +        +        + L     +   T L +    E     RD  + +  +  
Sbjct: 106 NLRKLNSRLFVIRG----QPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKEL 161

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +   S     L     I+        +     +A+I ++         +    +    T
Sbjct: 162 GIEVISAVSHTLYKLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEPAITLDTIANATT 221

Query: 190 PS--------NIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P          +P   +  F+      P++  GE  AL  L +  + K +     R    
Sbjct: 222 PQYEDHDDKYGVPTLEELGFETEGLKPPIWVGGETEALARLERHLERKAWVASFGRPKMT 281

Query: 239 IQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R  + +L + +    IK      S   +L+WREF+   
Sbjct: 282 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKACPPLSLHGQLLWREFFYCA 339

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   +I W++++  L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 340 ATKNPNFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 398

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P  
Sbjct: 399 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVK 457

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT+YIH P +  +      K  +   YPLP+V+H  A 
Sbjct: 458 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPETVQRTAKCIIGKEYPLPMVNHAIAS 517

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 518 RANMERIKQVYQQ 530


>gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus]
          Length = 569

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 124/493 (25%), Positives = 197/493 (39%), Gaps = 31/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  +  
Sbjct: 1   VHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLDT 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
           SL +        +        +       +  VT+L +    E     RD  + K  +  
Sbjct: 60  SLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEA 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V   + +   L     I+    Q   +     +ALI  +      ++ V + R+     
Sbjct: 116 GVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSSRMESCRA 175

Query: 190 PSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                    Y   +++ +           +  GE  AL  L K  + K +    +R    
Sbjct: 176 EIQKNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMN 235

Query: 239 IQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                   + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+   
Sbjct: 236 ANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYTA 294

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R
Sbjct: 295 ATNNPRFDRVEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLAR 353

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL V W  G   F   LLD D + N G W W  S       +F  + P  
Sbjct: 354 HAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPVG 412

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +  
Sbjct: 413 FGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPRPIVNHAETS 472

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 473 RLNIERMKQIYQQ 485


>gi|296283766|ref|ZP_06861764.1| deoxyribodipyrimidine photolyase [Citromicrobium bathyomarinum
           JL354]
          Length = 467

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 160/485 (32%), Positives = 235/485 (48%), Gaps = 36/485 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VWLR DLR+ DN ALYAA       +I VF+   E+            +++ SL  
Sbjct: 3   SPQIVWLRRDLRLADNPALYAAAQAG--PIIPVFVLDDERTGDRKYGDASRWWLHHSLES 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +S  +        +     DS+  L     +   + +  NR YE    +    L+K L
Sbjct: 61  LARSFGRHNASLILRRG----DSVNILADLAAKTGASAIHANRHYEPWWRKAQGDLKKAL 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                 +  D + L+P G+    +   YK+YTPF + +   +   D    P   I   G 
Sbjct: 117 PEGCDLELHDGNYLMPLGTATTGSGDPYKIYTPFSRTMRDLMPPRDDLPAP-ETISQPGD 175

Query: 188 VTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           + PS+     D+     +P         + IGE  A   L  +  + V  Y E R++P++
Sbjct: 176 LPPSDD--LADWSLLPTNPDWSTEMAKFWSIGEDAAHERLD-WWADHVGEYDEGRNLPSV 232

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TSQ+SP+L  G +SP Q W+R+K+       K   G  ++ +ELIWR++ ++++  +P
Sbjct: 233 DQTSQMSPHLHWGEISPVQIWHRMKD-------KRSDGWRTYESELIWRDYAQNVLCQFP 285

Query: 300 SVCMGKPFIPWTEKIEWNKD------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                       +   W            L+AW+ G TG+PI+DA MRQL  IGWMHNR+
Sbjct: 286 RYPEESYRDAIDDAKLWRNPNRGHVIQEELEAWQYGRTGYPIVDAGMRQLWAIGWMHNRV 345

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFL+K LL+DWR GE +F   L+D D ASN   WQW A TG DS  + RI  P  
Sbjct: 346 RMIAASFLIKHLLIDWRHGERWFWDTLVDADYASNGTNWQWVAGTGVDSNMFPRIMAPLS 405

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q ++FD   ++IR W+PEL ++P   IH P      N    +YP  I+ HK+A    L  
Sbjct: 406 QSEKFDA-ASYIREWVPELADLPDSEIHDPSDKCRPN----DYPAKIIGHKEARERALEA 460

Query: 474 YYAAK 478
           Y A K
Sbjct: 461 YRAMK 465


>gi|325981909|ref|YP_004294311.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
 gi|325531428|gb|ADZ26149.1| Deoxyribodipyrimidine photo-lyase [Nitrosomonas sp. AL212]
          Length = 434

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 149/474 (31%), Positives = 213/474 (44%), Gaps = 45/474 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + S+ + W R DLR+ DN  L  A  +    V+ VFI  P        +  +  FIY +L
Sbjct: 2   SASLVVFWFRRDLRLDDNVGLSHALASGQ-PVLPVFIFDPSILTGLPENDARVTFIYDTL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++  L ++           + +SIE  D       VT ++ N  YE     RD+ + +
Sbjct: 61  QTLRTQLEERYSSSI---ALYYGNSIEVFDQILRLHSVTAVYANHDYEPYARERDEAVCE 117

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+ R V   ++ D VL     I   +   Y VYTP+     +   +  LR+        
Sbjct: 118 WLKARSVAFNTYKDHVLFEKNEIAKDSGGPYVVYTPYMHKWRKVQSETTLRAYSTSEKLG 177

Query: 185 TGPVT-PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                  S      D  F       P         L       + +Y   RD PA+  TS
Sbjct: 178 NMIKHLHSPNLSLTDIGFVRSAVTIPA------SRLDTKL---LQHYAHDRDFPALTATS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            L P+L  G +S RQ + +      D+          + NELIWREF+  ++  +P    
Sbjct: 229 LLGPHLRFGTISIRQVFQQALNTSNDI----------FGNELIWREFFSQILWHFPH-TQ 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F P  ++I+W   +   + W +G TG+P++DA MRQLN  G MHNR+RMITASFL K
Sbjct: 278 NSSFKPRYDRIQWRNSAADFERWCKGMTGYPLVDAGMRQLNATGTMHNRVRMITASFLCK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+DWR GE YF  +LLD D+ASN G WQW A  G D+ PYFRIFNP  Q K+FD   +
Sbjct: 338 HLLIDWRWGEAYFAEKLLDYDMASNVGNWQWVAGCGVDAAPYFRIFNPETQIKKFDKNFS 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ W+ +                     +  YP P++ H  A    L  Y  A
Sbjct: 398 YIQTWVNDWR-------------------TPTYPAPMIKHTDARARCLETYQQA 432


>gi|52695977|pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
           Arabidopsis Thaliana
 gi|52695978|pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
           Arabidopsis Thaliana With Amppnp Bound
          Length = 509

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 25/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L   
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300
           LSP+L  G +S R+ ++ ++ + V    +           +L  +  RE+ R++   +P 
Sbjct: 250 LSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP- 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 309 YSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 368

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP
Sbjct: 369 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 428

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L
Sbjct: 429 NGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEAL 488

Query: 472 NQYYAAKKQS 481
           +Q +  +  S
Sbjct: 489 SQMWQLEAAS 498


>gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 546

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 136/500 (27%), Positives = 215/500 (43%), Gaps = 33/500 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHFI 61
           LVW R  LR+ DN AL AA   S A+V  VF+  P   R    +           +  F+
Sbjct: 16  LVWFRKGLRVHDNPALDAA-RRSAARVYPVFVLDPRYLRPDPAAPSPGSAHAGVARVRFL 74

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SLL +   L   G      +    DD  + + +      + KL +    E   + RDK
Sbjct: 75  LESLLDLDARLRCLGSRLLVLRA--RDDVSDAVCAALKDWNIGKLCFESDTEPYALARDK 132

Query: 122 LLEK-RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            +        +   S     L  P  I+  +  +    Y  F     +           +
Sbjct: 133 RVTDFAAASGIEVFSPVSHTLFDPAEIIEKNGGRPPLTYQSFVATAGEPPKPVMEEYSVL 192

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
           P I  TG      +P+  +  +  +     P F  GE  AL  +R+  ++K +   + + 
Sbjct: 193 PPIGDTGGYELLPVPKLEELGYGDLSQEYIPPFRGGETEALKRMRESLQDKEWVAKFEKP 252

Query: 234 RDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           +  P+      T+ LSPYL  G LS R  ++ +++ +       K    S   +L+WR+F
Sbjct: 253 KGDPSAFVKPATTVLSPYLKFGCLSVRYFYHCIQDVYRSAKTHTKP-PVSLAGQLLWRDF 311

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  +    P+    +   P  ++I W +   L  AW+ G TG+P IDA M QL   GWMH
Sbjct: 312 FYTVSLGTPNFDHMEG-NPICKQIPWRESEELFVAWRDGRTGYPWIDAIMIQLRKWGWMH 370

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G + F   L+D D A NNG W W  S  +    Y RI+
Sbjct: 371 HLARHSVACFLTRGDLYIHWEQGRDVFERLLIDSDWAINNGNWLW-LSCSSFFYQYHRIY 429

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           +P   GK++DP G +IRH++P L ++P +YI+ P +         +  +  +YP P+VDH
Sbjct: 430 SPISFGKKYDPNGDYIRHFIPVLKDMPKEYIYEPWTAPLSVQEKARCIVGKDYPKPVVDH 489

Query: 464 KKACHHTLNQYYAAKKQSLL 483
           + A      +   A   + L
Sbjct: 490 EAASKGCRRRMGEAYASNRL 509


>gi|260220093|emb|CBA27286.1| Deoxyribodipyrimidine photo-lyase [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 534

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 152/452 (33%), Positives = 218/452 (48%), Gaps = 18/452 (3%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
            +  S  LVW R DLR  DN AL  A    D  V  VF+       +     R+  FI  
Sbjct: 2   QSHFSTGLVWFRRDLRTEDNAALSRALACCDT-VYCVFVYDTAILDKLPRQDRRVEFIQE 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           S+  ++ SL            +  D +   +     Q +   +F  R YE   V RD  +
Sbjct: 61  SVTALESSLQALRGHASRTLITLHDVAHSAIPELAKQLQANAVFVARDYEPAAVTRDTAV 120

Query: 124 EK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLP 178
           ++  L          D V+     +L    + Y V+TP+ +A +      LV        
Sbjct: 121 QQQLLAEGKQLVLVKDQVIFEDREVLTQTGKPYGVFTPYHRAWLARIGSELVPGHDVCRG 180

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRD 235
              +          +P   D  F+A +        G      +L+ F   ++  Y E R+
Sbjct: 181 HAVLAAAPDALAKPLPSLADLGFEATNLRALGMHGGSAAGEAMLQDFL-GRMDRYSEARN 239

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P+++G S L  +L  G +S R+  N   +           GA  WL EL WR+FY  ++
Sbjct: 240 FPSVKGPSYLGVHLRFGTVSIRKLVNLALKRVR----TGSEGASVWLAELAWRDFYFQIL 295

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           A +P V   + F P  + I W +      L +AW +G TG+PI+DAAM QLN  G+MHNR
Sbjct: 296 ANFPHVAT-QAFKPEYDAIAWEQGEEAEALFEAWCEGKTGYPIVDAAMAQLNQTGYMHNR 354

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           LRM+  SFLVK L +DWR GE+YF  +L D DL++NNGGWQW AS+G D+ PYFRIFNP 
Sbjct: 355 LRMVAGSFLVKHLGLDWRWGEKYFALKLNDFDLSANNGGWQWVASSGCDAQPYFRIFNPV 414

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            Q ++FD QG FI+ +LP+L ++  + IHAP 
Sbjct: 415 TQSEKFDGQGKFIKRYLPQLADLSDKAIHAPW 446


>gi|302851497|ref|XP_002957272.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f.
           nagariensis]
 gi|300257367|gb|EFJ41616.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f.
           nagariensis]
          Length = 914

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 139/477 (29%), Positives = 226/477 (47%), Gaps = 23/477 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R DLR+ DN A   A  N+ A VI VFI  PE+  Q         +   SL+ +
Sbjct: 15  TAVVWFRRDLRVDDNPA-LEAALNAAATVIPVFIWAPEEEGQFQPGRCSRWWTKHSLVDL 73

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q++L+  G      + +   DS   L     + R   +F+N  Y+   + RD   ++ L 
Sbjct: 74  QQALAALGSRLIIRRST---DSTAELLKVVGEVRAEAVFFNHLYDPISLMRDHDCKRGLA 130

Query: 129 HRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   +F+  +L  P  +L+   Q Y  +  F  ++    V          A+     
Sbjct: 131 AAGVAHRTFNGDMLYEPWEVLDVNKQPYSTFDDFWNSVRAMTVPPPFPMAAPAAMPPVPA 190

Query: 188 VTPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             PS +    D+ F A            +  G   A+  L +F  E+++ +   R     
Sbjct: 191 FVPSLMVSEVDWFFTAEQEASSDQLKFKWKPGVGGAIAELERFVTERLHVFEHDRAKVDR 250

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHLMA 296
             TS+LSP++ IG +S R  + R+++   + L        S   +L ++ +RE+ R+L  
Sbjct: 251 DSTSRLSPWIHIGSISVRYIFYRIRQCQAEWLAAGVDRTRSCDDFLQQVGYREYSRYLSF 310

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     +  +       W  D H  +AW+QG TG+PI+DAAMRQL + GW HNR R++
Sbjct: 311 HFP-FIHERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRARVV 369

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFLVK+LL+ W+ G +++    +D DL  +  GWQ+ +   +D+ P+  + +   + +
Sbjct: 370 AASFLVKNLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEAR 429

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKAC 467
           RFDP G ++R WLP L+ +PT+YIH P             +L  NYP PI+ H  A 
Sbjct: 430 RFDPDGEYVRRWLPVLSRLPTEYIHGPWKAPPQVLAAADVELGCNYPAPIISHNDAR 486


>gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries]
 gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries]
          Length = 596

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 124/494 (25%), Positives = 199/494 (40%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 27  SVHWFRKGLRLHDNPALLAAVRGAHC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 85

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL +        +        +       +  VT+L +    E     RD  + K  + 
Sbjct: 86  RSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 141

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +A+I  +         V + ++ G  
Sbjct: 142 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEGCQ 201

Query: 189 TPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++ +           +  GE  AL  L K  + K +    +R   
Sbjct: 202 AEIQESHDETYGVPSLEELGFPTEGLGPAVWRGGETEALARLDKHLERKAWVASYERPRM 261

Query: 238 A----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                +   + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+  
Sbjct: 262 NASSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVK-RNSTPPLSLFGQLLWREFFYT 320

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 321 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMAQLRQEGWIHHLA 379

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W  S       +F  + P 
Sbjct: 380 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 438

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +A
Sbjct: 439 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAEA 498

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 499 SRLNIERMKQVYQQ 512


>gi|73983386|ref|XP_540761.2| PREDICTED: similar to cryptochrome 2 (photolyase-like) [Canis
           familiaris]
          Length = 593

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 124/494 (25%), Positives = 194/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 24  SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  VT+L +    E     RD  + K  + 
Sbjct: 83  TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138

Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180
             V   + +   L     I+    Q     Y  F+  + +  +           +     
Sbjct: 139 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 198

Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           A           +P   +  F  + + P  +  GE  AL  L K  + K +    +R   
Sbjct: 199 ADIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+  
Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 317

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 318 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W  S       +F  + P 
Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 435

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 436 GFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 496 SRLNIERMKQIYQQ 509


>gi|87123064|ref|ZP_01078915.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
 gi|86168784|gb|EAQ70040.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
          Length = 493

 Score =  363 bits (932), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 157/496 (31%), Positives = 221/496 (44%), Gaps = 37/496 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW----RQHGISARQSHFIYASL 65
            L W R DLR+ DN  L AA     A V  V +  P           ++  +  F+  SL
Sbjct: 6   TLFWHRRDLRLADNTGLQAAVGLGPA-VTGVVVLDPAILSPPPHLPPMAPARLWFLVESL 64

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           +++Q+   + G            D    L           + ++R  E     RD+ + +
Sbjct: 65  IELQQRWREAGSRLLV----VAGDPATVLPRLASLLDAPAVVWSRDVEPYARERDRAVAR 120

Query: 126 RLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            LQ          D +L+ P  +       Y+VY PF +     + +++  ++  P+  +
Sbjct: 121 ALQADGRKVLVDWDQLLVNPELLKTGGGDPYRVYGPFLRNWRGQVERSEPSTVASPSGLI 180

Query: 185 TGPVTPSNIPRFFD--------------------YPFQAIDPMFP-IGEQNALHILRKFC 223
                   +    +                    + F  I+      GE  A   L  F 
Sbjct: 181 DLEPETLALISSGEGELGRLCLEGQRQLEHLRAAHGFAGIELCPCRPGEAAAAEQLATFV 240

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWL 282
              +  Y   R++P++ GTS LS  LS+G LSPRQ W   +E    +    +      W 
Sbjct: 241 AGPLMAYEPDRNVPSVVGTSSLSAALSVGTLSPRQAWCAAQEVKQCVRSDEQLQAITVWE 300

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            EL WREFY+  +  +P +  G P+ P   +  W  +      WK G TG PIIDAAMRQ
Sbjct: 301 QELGWREFYQQALFHFPELADG-PYRPQWRRFPWENNDDWFDFWKDGQTGMPIIDAAMRQ 359

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           LN  GWMHNR RMI AS+LVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+G D 
Sbjct: 360 LNQTGWMHNRCRMIVASYLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASSGMDP 419

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
            P  RIFNP  Q  +FD +G +IR WLPEL +V T  +    S          YP P+V+
Sbjct: 420 KP-LRIFNPATQASKFDAEGEYIRRWLPELRHVNTNDL---LSGEIPALERRGYPEPLVN 475

Query: 463 HKKACHHTLNQYYAAK 478
           HK         Y   +
Sbjct: 476 HKSQQARFKALYATIR 491


>gi|83942471|ref|ZP_00954932.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
 gi|83846564|gb|EAP84440.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
          Length = 473

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 160/483 (33%), Positives = 231/483 (47%), Gaps = 27/483 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  S  L+W R DLR++D+ AL AA  N+   VI VFI        + + A     +   
Sbjct: 2   SDKSPILLWYRRDLRLSDHPALSAAA-NAGRPVIPVFIKDKSV---NALGAAPKWRLGLG 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  +  SL          +     D++E L +   +     ++++R Y+ + V+RD  ++
Sbjct: 58  VGALADSLEGVSSRLILREG----DALEALQALIKETGAGTVYWSRLYDPDSVQRDSKIK 113

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVP 180
           + L    +  KSF   V+  P ++   A   YKVYTPF   +    V+  L +   LP P
Sbjct: 114 ETLCNDGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDLPAP 173

Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +   +  +    +    D     +     +GE+ A   L  F    V  Y   RDIP  
Sbjct: 174 ESWPDSDALDGWGLGAAMDRGADVVRRFVCLGEKAAQSRLGAFMAHGVADYKLTRDIPGT 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS LS  LS+G +SP QCW+  +    D     K GA ++L EL+WREF  HLM   P
Sbjct: 234 DGTSNLSENLSLGEISPHQCWHAAQRALHD----GKQGAETFLKELVWREFAYHLMHHTP 289

Query: 300 SVCMGKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            +     +    +   WN+D     ++AWKQG TG P +DAAMR+L   G MHNR RMI 
Sbjct: 290 RMLTDN-WREEWDAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRGRMIV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+L K L+  WRIG+++F   L+D D ASN  GWQWAA +G D+ PYFR+FNP  Q  +
Sbjct: 349 ASYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPETQLDK 408

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           FD    +   W+ E    P +   A     P SW    D   +YP  I+   +     L 
Sbjct: 409 FDKNRDYASRWIAEGRANPHKDALAFFDAIPRSWPLSAD--DDYPEKIIALDEGRERALE 466

Query: 473 QYY 475
            Y 
Sbjct: 467 TYK 469


>gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 [Callithrix jacchus]
          Length = 593

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 124/494 (25%), Positives = 195/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 24  SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 82

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  VT+L +    E     RD  + K  + 
Sbjct: 83  TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 138

Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180
             V   + +   L     I+    Q     Y  F+  + +  +           +     
Sbjct: 139 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 198

Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           A           +P   +  F  + + P  +  GE  AL  L K  + K +    +R   
Sbjct: 199 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 258

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+  
Sbjct: 259 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 317

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 318 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 376

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W  S       +F  + P 
Sbjct: 377 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 435

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 436 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 495

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 496 SRLNIERMKQIYQQ 509


>gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus]
 gi|81867613|sp|Q923I8|CRY2_RAT RecName: Full=Cryptochrome-2
 gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus]
          Length = 594

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 129/503 (25%), Positives = 198/503 (39%), Gaps = 33/503 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F
Sbjct: 16  MGADGASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 72

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL +        +        +       +  VT+L +    E     RD
Sbjct: 73  LLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERD 128

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL---- 174
             + K  +   V   + +   L     I+    Q     Y  F+  + +  +        
Sbjct: 129 AAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAV 188

Query: 175 ---RSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVY 228
                    A           +P   +  F  + + P  +  GE  AL  L K  + K +
Sbjct: 189 SSQHMENCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALVRLDKHLERKAW 248

Query: 229 YYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               +R            + LSPYL  G LS R  + RL + +  +  +  +   S   +
Sbjct: 249 VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVK-RNSTPPLSLFGQ 307

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL 
Sbjct: 308 LLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 366

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W  S      
Sbjct: 367 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQ 425

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYP 457
            +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +         + ++YP
Sbjct: 426 QFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAANCIIGVDYP 485

Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480
            PIV+H +     + +     +Q
Sbjct: 486 RPIVNHAETSRLNIERMKQIYQQ 508


>gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens]
 gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens]
          Length = 614

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 129/501 (25%), Positives = 199/501 (39%), Gaps = 33/501 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
             +A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+ 
Sbjct: 40  TDSASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLL 96

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL +        +        +       +  VT+L +    E     RD  
Sbjct: 97  QSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 152

Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL--- 177
           + K  +   V   + +   L     I+    Q     Y  F+  + +  +      L   
Sbjct: 153 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 212

Query: 178 ----PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYY 230
                  A           +P   +  F  + + P  +  GE  AL  L K  + K +  
Sbjct: 213 QQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVA 272

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + RL + +  +  +  +   S   +L+
Sbjct: 273 NYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLL 331

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   
Sbjct: 332 WREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQE 390

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W  S       +
Sbjct: 391 GWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQF 449

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP P
Sbjct: 450 FHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRP 509

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           IV+H +     + +     +Q
Sbjct: 510 IVNHAETSRLNIERMKQIYQQ 530


>gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori]
 gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori]
 gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori]
          Length = 730

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 130/505 (25%), Positives = 197/505 (39%), Gaps = 34/505 (6%)

Query: 1   MKAT--TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58
           M A   T     + W R  LRI DN AL     ++      VFI  P       +   + 
Sbjct: 24  MSAPRRTPGKHTVHWFRKGLRIHDNPALREGIIDA-VTFRCVFIIDPWFASSSNVGINKW 82

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L  + KSL +        +        + L     +   T L +    E     
Sbjct: 83  RFLLQCLEDLDKSLKKLNSRLFVVRG----QPADALPKLFREWGTTALTFEEDPEPYGRV 138

Query: 119 RDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD  +  + +   +   S     L     I+        +     +ALI ++       +
Sbjct: 139 RDHNIISKCREVGITVTSRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPPPAEV 198

Query: 178 PVPAIRLTGPVTPS--------NIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEK 226
            +    L G  TP          +P   +  F+      P++  GE  AL  L +  + K
Sbjct: 199 TITPQMLNGATTPITDNHDDRFGVPTLEELGFETEGLKPPIWIGGESEALARLERHLERK 258

Query: 227 VYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +     R     Q      + LSPYL  G LS R  + +L E +    +K      S  
Sbjct: 259 AWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYK--RVKRVRPPLSLH 316

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +++WREF+       P+    +   P   +I W K+   L  W  G TG+P IDA M Q
Sbjct: 317 GQILWREFFYCAATRNPNFDRMEG-NPICVQIPWEKNQDALAKWANGQTGYPWIDAIMIQ 375

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  + 
Sbjct: 376 LREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-FSCSSF 434

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLN 455
              +F  + P   G++ DP G FIR ++P L N+PT+YIH P           +  +  +
Sbjct: 435 FQQFFHCYCPVRFGRKTDPNGDFIRKYIPALKNMPTRYIHEPWMAPESVQAAAQCSIGRD 494

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480
           YP+P+VDH KA    + +      Q
Sbjct: 495 YPMPMVDHTKASQINIERIKQVYAQ 519


>gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes]
          Length = 614

 Score =  362 bits (930), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 124/494 (25%), Positives = 195/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 45  SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 103

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  VT+L +    E     RD  + K  + 
Sbjct: 104 TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 159

Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180
             V   + +   L     I+    Q     Y  F+  + +  +           +     
Sbjct: 160 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 219

Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           A           +P   +  F  + + P  +  GE  AL  L K  + K +    +R   
Sbjct: 220 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 279

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+  
Sbjct: 280 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 338

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 339 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 397

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W  S       +F  + P 
Sbjct: 398 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 456

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 457 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 516

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 517 SRLNIERMKQIYQQ 530


>gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii]
          Length = 623

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 194/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L  +   +   V  V+I  P       +   +  F+   L  + 
Sbjct: 5   TVHWFRKGLRLHDNPSLRDSIQGAHT-VRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +    D           +  +T+L Y    E     RD  ++K    
Sbjct: 64  ASLRKLNSRLFVIRGQPTD----VFPRLFKEWNITRLSYEYDSEPFGKERDAAIKKLANE 119

Query: 130 RVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +         L     I+        +     + LI  +   +  +  + A  +    
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGTCT 179

Query: 189 TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           TP +        +P   +  F        ++P GE  AL  L +  + K +    +R   
Sbjct: 180 TPVSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFERPRM 239

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS +  + +L + +  +  K  S   S   +L+WREF+  
Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCQLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYT 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 299 TATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 357

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P +YI+ P +  +      K  + ++YP P+V H +A
Sbjct: 417 SFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWTAPESVQKAAKCIIGVHYPKPMVHHAEA 476

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 477 SRLNIERMKQIYQQ 490


>gi|118572252|sp|Q49AN0|CRY2_HUMAN RecName: Full=Cryptochrome-2
 gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens]
 gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
 gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
 gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens]
 gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens]
 gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct]
 gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct]
          Length = 593

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 129/501 (25%), Positives = 199/501 (39%), Gaps = 33/501 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
             +A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+ 
Sbjct: 19  TDSASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLL 75

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL +        +        +       +  VT+L +    E     RD  
Sbjct: 76  QSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 131

Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL--- 177
           + K  +   V   + +   L     I+    Q     Y  F+  + +  +      L   
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 191

Query: 178 ----PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYY 230
                  A           +P   +  F  + + P  +  GE  AL  L K  + K +  
Sbjct: 192 QQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVA 251

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + RL + +  +  +  +   S   +L+
Sbjct: 252 NYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLL 310

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   
Sbjct: 311 WREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQE 369

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W  S       +
Sbjct: 370 GWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQF 428

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP P
Sbjct: 429 FHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRP 488

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           IV+H +     + +     +Q
Sbjct: 489 IVNHAETSRLNIERMKQIYQQ 509


>gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca]
          Length = 581

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 125/494 (25%), Positives = 194/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 12  SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 70

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +    D           +  VT+L +    E     RD  + K  + 
Sbjct: 71  TSLRKLNSRLFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 126

Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180
             V   + +   L     I+    Q     Y  F+  + +  +           +     
Sbjct: 127 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 186

Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           A           +P   +  F  + + P  +  GE  AL  L K  + K +    +R   
Sbjct: 187 ADIQESHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 246

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+  
Sbjct: 247 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 305

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 306 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 364

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W  S       +F  + P 
Sbjct: 365 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 423

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 424 GFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 483

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 484 SRLNIERMKQIYQQ 497


>gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens]
          Length = 589

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 129/501 (25%), Positives = 199/501 (39%), Gaps = 33/501 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
             +A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+ 
Sbjct: 15  TDSASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLL 71

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL +        +        +       +  VT+L +    E     RD  
Sbjct: 72  QSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 127

Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL--- 177
           + K  +   V   + +   L     I+    Q     Y  F+  + +  +      L   
Sbjct: 128 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 187

Query: 178 ----PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYY 230
                  A           +P   +  F  + + P  +  GE  AL  L K  + K +  
Sbjct: 188 QQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVA 247

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + RL + +  +  +  +   S   +L+
Sbjct: 248 NYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLL 306

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   
Sbjct: 307 WREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQE 365

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W  S       +
Sbjct: 366 GWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQF 424

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP P
Sbjct: 425 FHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRP 484

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           IV+H +     + +     +Q
Sbjct: 485 IVNHAETSRLNIERMKQIYQQ 505


>gi|77963974|gb|ABB13328.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
 gi|77963976|gb|ABB13329.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
 gi|77963978|gb|ABB13330.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
          Length = 694

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 139/497 (27%), Positives = 227/497 (45%), Gaps = 22/497 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A +  +VW R DLR+ DN A  AA   +  +V+  ++  PE+   +        ++ 
Sbjct: 11  AGEAATRTVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWAPEEDGPYYPGRVSRWWLS 69

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL + G      + S   D++  L         T LF+N  Y+   + RD  
Sbjct: 70  QSLKHLDASLRRLGASRLVTRRST--DTVAALLELVRSTGATHLFFNHLYDPLSLVRDHR 127

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +++ L    I  +SF+  +L  P  +L+     + ++T F    +  +        P   
Sbjct: 128 VKQVLAAEGISVQSFNSDLLYEPWEVLDDHGSPFTMFTSFWNKCLCMVDPPAPMLPPKRI 187

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    S+   F D   +  + +    +  G QNA      F    +  Y   R   
Sbjct: 188 NSGDLTRCSSDDLIFEDDSERGSNALLARAWSPGWQNADKAFTAFINGPLIDYSVNRKKA 247

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSPYL  G LS R+ +++++ +      +     + G   +L  +  RE+ R+
Sbjct: 248 DSANTSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNRDGEEGCSLFLRSIGLREYSRY 307

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 308 LAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRI 366

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP  
Sbjct: 367 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQF 426

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
           +G +FDP G ++R WLPEL  +PT++IH P    +        +L  NYPLPIV+  +A 
Sbjct: 427 EGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDEAK 486

Query: 468 HH---TLNQYYAAKKQS 481
                 L++ +  +  S
Sbjct: 487 SRLQDALSEMWELEAAS 503


>gi|161138114|gb|ABX58028.1| cryptochrome 1a [Triticum aestivum]
          Length = 698

 Score =  362 bits (929), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 141/508 (27%), Positives = 236/508 (46%), Gaps = 32/508 (6%)

Query: 1   MKATTAMS-------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI 53
           M A+ +MS         +VW R DLR+ DN A  AA   +  +V+  ++  PE+   +  
Sbjct: 1   MSASPSMSGGAGERTRTVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWAPEEDGPYYP 59

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
                 ++  SL  +  SL + G      + S   D++  L         T LF+N  Y+
Sbjct: 60  GRVSRWWLSQSLKHLDASLRRLGATRLVTRRST--DTVAALLELVRSTGATHLFFNHLYD 117

Query: 114 INEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              + RD  +++ L    +  +SF+  +L  P  +L+     + ++TPF    +  +   
Sbjct: 118 PLSLVRDHRVKQVLGAEGITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTCLCMVDPP 177

Query: 173 DLRSLP--VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226
                P  + +  L+   +  ++  F D   +  + +    +  G QNA      F    
Sbjct: 178 APMLPPKRINSGELSRCCSSDDLI-FEDESERGSNALLARAWSPGWQNADKAFTAFINGP 236

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWL 282
           +  Y   R       TS LSPYL  G LS R+ +++++ +      +     + G   +L
Sbjct: 237 LIDYSVNRKKADSANTSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNGDGEEGCSLFL 296

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             +  RE+ R+L   +P     KP +       W  +    + W+QG TG+P++DA MR+
Sbjct: 297 RSIGLREYSRYLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRE 355

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D 
Sbjct: 356 LWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDG 415

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456
               RI NP  +G +FDP G ++R WLPEL  +PT++IH P    +        +L  NY
Sbjct: 416 RELDRIDNPQFEGYKFDPCGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNY 475

Query: 457 PLPIVDHKKACHH---TLNQYYAAKKQS 481
           PLPIV+  +A       L++ +  +  S
Sbjct: 476 PLPIVELDEAKSRLQDALSEMWELEAAS 503


>gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca]
          Length = 580

 Score =  362 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 125/494 (25%), Positives = 194/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 12  SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 70

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +    D           +  VT+L +    E     RD  + K  + 
Sbjct: 71  TSLRKLNSRLFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 126

Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180
             V   + +   L     I+    Q     Y  F+  + +  +           +     
Sbjct: 127 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 186

Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           A           +P   +  F  + + P  +  GE  AL  L K  + K +    +R   
Sbjct: 187 ADIQESHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 246

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+  
Sbjct: 247 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 305

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 306 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 364

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W  S       +F  + P 
Sbjct: 365 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 423

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 424 GFGRRTDPSGDYIRRYLPILKGFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 483

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 484 SRLNIERMKQIYQQ 497


>gi|149196503|ref|ZP_01873557.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa
           HTCC2155]
 gi|149140183|gb|EDM28582.1| deoxyribodipyrimidine photolyase-class I [Lentisphaera araneosa
           HTCC2155]
          Length = 429

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 150/473 (31%), Positives = 225/473 (47%), Gaps = 47/473 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67
           ++  W R DLR+ DN  LYAA    + KV  +FI   +  ++    +  +  FI+  + +
Sbjct: 2   INYFWFRRDLRLEDNCGLYAALEAGE-KVRPIFIFDTKILKKLTSKNDPRVSFIHQKIKE 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   +  KG    +    +  ++ + +    LQ +   ++ NR YE   + RD  +E+ L
Sbjct: 61  LDHQIKAKGGSGIWVYYGDVKETWKEI----LQSQTGDVYCNRDYEPAAIDRDHEVEQIL 116

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + H     SF D V+     +L      Y VYTP+RKA         L+  P        
Sbjct: 117 RSHGQNLHSFKDQVIFEEDEVLKKDGTPYTVYTPYRKAWELKFSPEMLKPFPSDLKNNYD 176

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                 IP   +  F+         E+ A    +    + +  Y   RD PA+  TS LS
Sbjct: 177 TSPSKAIPSLEEMGFE---------EKKAHEGNKNLNTQLLLNYSVDRDFPALNATSLLS 227

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             L  G +S R    +                 ++L+ELIWREF+  ++  +P     + 
Sbjct: 228 VQLRFGAISIRHLAKQALNL-----------DSTYLHELIWREFFMMILYHFPHSAKQE- 275

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F     ++ W  D    + W  G TG+P++DA MR+LN  G+MHNR+RM+TASFLVK LL
Sbjct: 276 FKEQYSRVPWRYDHEDFKRWCFGKTGYPLVDAGMRELNETGYMHNRVRMVTASFLVKHLL 335

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR GEEYF  +L+D D+++N G WQWAA  G D+ PYFR+FNPT Q +RFD Q  +I+
Sbjct: 336 IDWRWGEEYFARKLMDYDMSANVGNWQWAAGCGCDAAPYFRVFNPTAQKERFDKQEEYIK 395

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            W+PE N +                    YP P++DHK A    +  Y  A K
Sbjct: 396 KWIPEYNTML-------------------YPEPMIDHKFARERAIETYKKALK 429


>gi|126695647|ref|YP_001090533.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301]
 gi|126542690|gb|ABO16932.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9301]
          Length = 478

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 163/484 (33%), Positives = 239/484 (49%), Gaps = 29/484 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN++L  A   S+A + + +I           ++ ++ F+  SL ++  
Sbjct: 7   LFWHRKDLRIFDNQSLIKAFSLSNA-ITSTYIFDKNYPHDFNANS-RAWFLGNSLQELGN 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +  + G      +     D +  +     +     +F+N+  E  E+ RD  ++K L+ +
Sbjct: 65  NWKKMGSRLIMEEG----DPVLIIPQLAKKIDAKFVFWNKSIEPYEINRDLKIKKNLEEQ 120

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPVPAIRLTG 186
            I      D +L+ P  I +   + Y VY PF K L   +      D   +      +  
Sbjct: 121 NIQVIETWDHLLIEPLKIFSGNNKPYSVYGPFYKNLKSKMNLLGPYDQDKVVFQFKDIDN 180

Query: 187 PVTPSNIPRFFDYPFQAI--DPMFPI--------GEQNALHILRKFCKEK-VYYYVEQRD 235
            +  +      D   +    +  FP         GE  A  IL  F  EK +Y Y   RD
Sbjct: 181 KLKENKTINSSDSVLEKFIKNIKFPGSNICPCKPGENAAETILENFINEKKIYSYDSARD 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHL 294
            P+  GTS LS  L  G +S R+ WN       D   +       +W  EL+WREFY+H 
Sbjct: 241 FPSHNGTSFLSASLRFGTISIRKIWNATLNLNSDCANRVNYLSIETWQKELVWREFYQHC 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +  G P+    +   W  ++   Q W  G TG PI+DAAMRQLN+ GWMHNR R
Sbjct: 301 LFHFPELEKG-PYRKKWDHFPWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNRCR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFLVKDL+ +W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q
Sbjct: 360 MIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 418

Query: 415 GKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
            K+FDP   +I++W+PEL+ V   + ++   S L+KN    NY  PIV+H        + 
Sbjct: 419 AKKFDPICEYIKYWIPELSKVSNSELLNGEISNLEKN----NYSSPIVNHNIQQRLFKSL 474

Query: 474 YYAA 477
           Y   
Sbjct: 475 YAEI 478


>gi|55251266|emb|CAH69047.1| cryptochrome 1a [Danio rerio]
 gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio]
 gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio]
          Length = 619

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 118/494 (23%), Positives = 190/494 (38%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L  +   + + V  V+I  P       +   +  F+   L  + 
Sbjct: 5   TVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +    D           +  + +L Y    E     RD  ++K    
Sbjct: 64  ASLRKLNSRLFVIRGQPTD----VFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119

Query: 130 RVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--------PVP 180
             +         L     I+        +     + LI  +   +  +         P  
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGPCT 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                       +P   +  F        ++P GE  AL  L +  + K +    +R   
Sbjct: 180 TPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFERPRM 239

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + +L + +  +  K  S   S   +L+WREF+  
Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYT 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 299 AATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 357

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P +YI+ P +  +      K  + ++YP+P+V H +A
Sbjct: 417 SFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 477 SRLNIERMKQIYQQ 490


>gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2-like [Pongo abelii]
          Length = 614

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 124/494 (25%), Positives = 195/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 45  SVHWFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 103

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  VT+L +    E     RD  + K  + 
Sbjct: 104 TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 159

Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180
             V   + +   L     I+    Q     Y  F+  + +  +           +     
Sbjct: 160 AGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCR 219

Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           A           +P   +  F  + + P  +  GE  AL  L K  + K +    +R   
Sbjct: 220 AEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 279

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+  
Sbjct: 280 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 338

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 339 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 397

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W  S       +F  + P 
Sbjct: 398 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 456

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H + 
Sbjct: 457 GFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAET 516

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 517 SRLNIERMKQIYQQ 530


>gi|302755656|ref|XP_002961252.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii]
 gi|300172191|gb|EFJ38791.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii]
          Length = 494

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 222/485 (45%), Gaps = 26/485 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             S  +VW R DLR+ DN     A  +    V+ +FI   E+  +         ++  SL
Sbjct: 2   GSSTTIVWFRRDLRVEDNP--ALAAASKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +  SL++ G      +  +   S+  L       + T++FYN  Y+   + RD  ++ 
Sbjct: 60  MHLNSSLAKLGCPLLMQK--SRGSSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKH 117

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L Q+ +  ++F+  +L  P  + +     Y  +  F +  +    + D   LP   +  
Sbjct: 118 GLSQYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLPPKRLSP 177

Query: 185 TGPV------TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234
                      P+      D   ++ + M    +  G  NA   L  F    +  Y + R
Sbjct: 178 PAEPGLGHLGLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKALDAFLAGPLADYGDNR 237

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290
                  TS LSP+L  G LS R+ ++ ++ +      D     +  A  +L  L +RE+
Sbjct: 238 GKVDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREY 297

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R+L   +P     +  +       W  D    +AW+QG TG+P++DA MR+L   GW+H
Sbjct: 298 SRYLCFHFP-FTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLH 356

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R+  
Sbjct: 357 NRIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEI 416

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHK 464
           P ++G+RFDP G ++R WLPEL+ +PT++IH P +           +L  NYP P+V+  
Sbjct: 417 PHVEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVEIA 476

Query: 465 KACHH 469
            A   
Sbjct: 477 AARER 481


>gi|254476074|ref|ZP_05089460.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
 gi|214030317|gb|EEB71152.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
          Length = 478

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 152/482 (31%), Positives = 238/482 (49%), Gaps = 27/482 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A +  + W+R DLR++DN AL AA  +S A V+ VFI      +   + A     +   L
Sbjct: 7   ANAPVIWWIRRDLRLSDNAALTAAV-DSGAPVLPVFIFDS---QDEDLGAAPRFRLGLGL 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + L + G      + S    +++ L     +     + + R Y+     RD L+++
Sbjct: 63  EHLAQRLERLGSRLILRRGS----ALQVLQDLLKETGAQAVHWTRAYDPASRARDTLIKE 118

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183
            L+   V   S+  ++L  P ++      MY+VYTPF +A+    V   L +   +PA  
Sbjct: 119 TLKSQGVAAHSYSGNLLFEPWTVETKTGGMYRVYTPFWRAVRGRDVPGLLVAPGTIPAPE 178

Query: 184 LTGPVTPSNIPRF---FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                   +  +           +     +GE+ A   L +F +  +  Y + RD+PA+ 
Sbjct: 179 QWPNSDQLDTWKLAAAMRRGAPVLAAHCRVGEEAAQDRLDEFIETGIARYQDLRDLPAVD 238

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LS  L+ G +SP++ W+R      + + +  +GA ++L E++WREF  HLM   P 
Sbjct: 239 GTSGLSENLAWGEISPQRMWHR----GAEAMAQGAAGAETFLKEVVWREFAYHLMFHTPH 294

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +   K +    +   W+++    +   WKQG TG+  +DAAMR+L   G MHNR RMI A
Sbjct: 295 ILT-KSWREEWQSFAWSENEDTPEVLAWKQGRTGYRFVDAAMRELYVTGKMHNRARMIVA 353

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K +L  WRIG+++F   L+D D ASN  GWQW A +G D+ P+FR+FNP  Q  +F
Sbjct: 354 SFLTKHMLTHWRIGQKWFEHCLVDWDPASNAMGWQWVAGSGPDAAPFFRVFNPDGQLDKF 413

Query: 419 DPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           DP+G +   W+ E N  P     A     P SW    D++   P PI+D K      L  
Sbjct: 414 DPKGRYQAQWIAEGNPKPPDTARAFFTACPKSWQLSADMAR--PRPILDLKAGRERALEA 471

Query: 474 YY 475
           Y+
Sbjct: 472 YH 473


>gi|311743511|ref|ZP_07717317.1| deoxyribodipyrimidine photo-lyase [Aeromicrobium marinum DSM 15272]
 gi|311312641|gb|EFQ82552.1| deoxyribodipyrimidine photo-lyase [Aeromicrobium marinum DSM 15272]
          Length = 463

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 160/474 (33%), Positives = 233/474 (49%), Gaps = 29/474 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   ++W R DLR+ DN AL AA       V+ + +     W   G   R + F    L 
Sbjct: 17  MGTSVMWFRADLRLHDNPALRAAVEAGPDGVVPLVVLDDHLWG-PGAGVRTACFA-RLLA 74

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  + +    +V          D +  +           +     +     RRD  +E+ 
Sbjct: 75  EFDERIGGLHVV--------HGDPVAEVVRVARAVDAGTVHVAAAHTPYGARRDAAVERA 126

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  H V       +  + PG +       Y+VYTPF +A   +  +      P PA+R  
Sbjct: 127 LADHDVALVRTGSAYAVSPGRVTKPDGTPYRVYTPFHRAWSAHGWR-----APAPAVRSV 181

Query: 186 GPVTPSN-IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             + P     R  +        + P+GE+ A    R + KE+V  Y + RD+P +  TS+
Sbjct: 182 PWLRPGGRTHRIPEVAVPEGVTLPPLGEEAARRRWRDW-KEQVTQYDDVRDLPGVDRTSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +S +L  G + PR           DL      G  S++ E+ +REFY  ++   P    G
Sbjct: 241 MSVHLKWGTIHPRTLL-------ADLDGHDSDGVRSYVREIAFREFYADVLHHRPDSAHG 293

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             + P   ++E+++    L AW+ G TG+PI+DA MRQL   GWMHNR+RMI ASFLVKD
Sbjct: 294 Y-YNPALARMEYDRPGESLDAWRTGTTGYPIVDAGMRQLAAEGWMHNRVRMIVASFLVKD 352

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L V+W  G  +FM +L DGDLASN  GWQW A  G D+ PY+R+FNPT QGK+FDP GT+
Sbjct: 353 LHVEWTHGAAHFMDRLADGDLASNQHGWQWVAGCGTDASPYYRVFNPTTQGKKFDPDGTY 412

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R W+PEL +VP +++H P +     D    YP PIVDH +     L +Y A +
Sbjct: 413 VRRWVPELRDVPDRFVHEPWTAPTPPD---GYPAPIVDHAEERREALRRYEAVR 463


>gi|116267987|ref|NP_001070765.1| cryptochrome 1a isoform 1 [Danio rerio]
 gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio]
          Length = 619

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 118/494 (23%), Positives = 190/494 (38%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L  +   + + V  V+I  P       +   +  F+   L  + 
Sbjct: 5   TVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +    D           +  + +L Y    E     RD  ++K    
Sbjct: 64  ASLRKLNSRLFVIRGQPTD----VFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119

Query: 130 RVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--------PVP 180
             +         L     I+        +     + LI  +   +  +         P  
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGPCT 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                       +P   +  F        ++P GE  AL  L +  + K +    +R   
Sbjct: 180 TPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFERPRM 239

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + +L + +  +  K  S   S   +L+WREF+  
Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYT 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 299 AATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 357

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P +YI+ P +  +      K  + ++YP+P+V H +A
Sbjct: 417 SFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 477 SRLNIERMKQIYQQ 490


>gi|4325368|gb|AAD17364.1| Arabidopsis thaliana flavin-type blue-light photoreceptor
           (SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226,
           N=1)
          Length = 702

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 218/486 (44%), Gaps = 31/486 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL AA       VIA+F+  PE+   +        ++  SL Q+  
Sbjct: 15  IVWFRRDLRVEDNPALAAAVRAG--PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL   G      + +   DS+  L         +++F+N  Y+   + RD   +  L   
Sbjct: 73  SLRSLGTCLITKRST---DSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQ 129

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +SF+  +L  P  + +   + + ++  F +  +      +   LP   I       
Sbjct: 130 GIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 189

Query: 190 PSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P  F+   +      +   +  G  N    L  F    +  Y + R       TS 
Sbjct: 190 CVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSF 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +              +     +     +L  +  RE+ R++   +P     
Sbjct: 250 LSPHLHFGEV----------AWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHE 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +P +   +   W  D +  +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK 
Sbjct: 299 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + WR G +YF   LLD DL S+  GWQ+   T  DS  + RI NP  +G +FDP G +
Sbjct: 359 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 418

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TLNQYY 475
           +R WLPEL+ +PT +IH P +  +        +L  NYPLPIV   +A       L+Q +
Sbjct: 419 VRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMW 478

Query: 476 AAKKQS 481
             +  S
Sbjct: 479 QLEAAS 484


>gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens]
          Length = 593

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 129/501 (25%), Positives = 199/501 (39%), Gaps = 33/501 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
             +A SVH  W R  LR+ DN AL AA   +   V  V+I  P       +   +  F+ 
Sbjct: 19  TDSASSVH--WFRKGLRLHDNPALLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLL 75

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL +        +        +       +  VT+L +    E     RD  
Sbjct: 76  QSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAA 131

Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL--- 177
           + K  +   V   + +   L     I+    Q     Y  F+  + +  +      L   
Sbjct: 132 IMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTS 191

Query: 178 ----PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYY 230
                  A           +P   +  F  + + P  +  GE  AL  L K  + K +  
Sbjct: 192 QQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVA 251

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + RL + +   + +  +   S   +L+
Sbjct: 252 NYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLY-KRVKRNSTPPLSLFGQLL 310

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   
Sbjct: 311 WREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQE 369

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W  S       +
Sbjct: 370 GWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQF 428

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP P
Sbjct: 429 FHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRP 488

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           IV+H +     + +     +Q
Sbjct: 489 IVNHAETSRLNIERMKQIYQQ 509


>gi|90415238|ref|ZP_01223172.1| putative photolyase [marine gamma proteobacterium HTCC2207]
 gi|90332561|gb|EAS47731.1| putative photolyase [marine gamma proteobacterium HTCC2207]
          Length = 445

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 135/454 (29%), Positives = 221/454 (48%), Gaps = 22/454 (4%)

Query: 41  FIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ 100
           +I      +   +      +++ +L  + KSL  K  +F         D++  L      
Sbjct: 2   YIFDQSNTQDWTLGGASRWWLHHALQSLDKSLDGKLNIF-------SGDALAILSELSAS 54

Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYT 159
                +++NR YE   + RD  ++ RL+   +  +SF+ S+L  P  +L      YKV+T
Sbjct: 55  MSAKAVYWNRCYEPQSIERDANIKTRLKEAGLDVQSFNGSLLWEPWQVLKKDGTPYKVFT 114

Query: 160 PF-RKALIQNLVQADLRSLP--VPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNA 215
           P+ R+  +Q +       +P  +  ++    +T  ++       + + +   + I E  A
Sbjct: 115 PYYRRGCLQKVAPRQPLPVPKTLDLVKADNSLTVEDLSLLPAIDWDKKLHGDWDISEDGA 174

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
              L  F    +  Y E R+ P  +  S+LSPY   G +S               LI  +
Sbjct: 175 KDRLDDFVFNGIQDYREGRNFPNKKNVSRLSPYFHFGQMSVNT--AWYAANDAAALIDNE 232

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFP 334
           S   ++L+EL WREF  +L+  +P +              W K++   L+AW++G TG+P
Sbjct: 233 SNLDTFLSELGWREFSYYLLYHFPKLPTDN-LQQRFNVFPWAKNTDAELKAWQKGKTGYP 291

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           ++DA MR+L   G+MHNR+RM+  SF+VK+LL+ W  GE +F   L+D DLA+N+  WQW
Sbjct: 292 LVDAGMRELYGTGYMHNRVRMVVGSFMVKNLLIHWHSGERWFWDCLVDADLAANSASWQW 351

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLD 448
            A  G D+ P+FRIFNP  Q ++FD QG +IR  +PEL  +P +YIHAP           
Sbjct: 352 IAGCGADAAPFFRIFNPITQSEKFDKQGDYIRRHVPELAEMPAKYIHAPWLAPADVLAAA 411

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
             ++  +YP PI+D K++    L  +   K   L
Sbjct: 412 GVEIGTDYPAPIIDIKESRERALAAFKMTKNDVL 445


>gi|158291667|ref|XP_313179.3| AGAP004261-PA [Anopheles gambiae str. PEST]
 gi|157017656|gb|EAA44753.3| AGAP004261-PA [Anopheles gambiae str. PEST]
          Length = 961

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 118/494 (23%), Positives = 188/494 (38%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL      +      VFI  P       +   +  F+   L  + 
Sbjct: 6   TVHWFRKGLRLHDNPALREGLRGARTF-RCVFIIDPWFAGSSNVGINKWRFLLQCLDDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L +        +        + L     +   T L +    E     RD  + +  + 
Sbjct: 65  RNLRKLNSRLFVIRG----QPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKE 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKV-YTPFRKALIQNLVQADLRSL-------PVP 180
             +   S     L     I+        + Y  F+  +          +           
Sbjct: 121 LGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGNAN 180

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             +         +P   +  F+      P++  GE  AL  L +  + K +     R   
Sbjct: 181 TPQYDDHDDKYGVPTLEELGFETEALRPPVWIGGETEALARLERHLERKAWVASFGRPKM 240

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             Q      + LSPYL  G LS R  + +L + +    IK      S   +L+WREF+  
Sbjct: 241 TPQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKACPPLSLHGQLLWREFFYC 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+        P   +I W++++  L  W  G TGFP IDA M QL   GW+H+  
Sbjct: 299 AATKNPTFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLA 357

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G++ DP G +IR +LP L N PT++IH P +  +      K  +  +YPLP+V+H  A
Sbjct: 417 KFGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIA 476

Query: 467 CHHTLNQYYAAKKQ 480
               + +     + 
Sbjct: 477 SRANMERIKQVYQH 490


>gi|110638357|ref|YP_678566.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281038|gb|ABG59224.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme)
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 433

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 148/474 (31%), Positives = 220/474 (46%), Gaps = 49/474 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQ 67
           V + W R DLR+TDN  L+ A   S   V+ VFI            +  +  FI+ ++  
Sbjct: 4   VVVFWFRRDLRLTDNAGLFQAL-TSGYAVLPVFIFDINILNALEHKNDARVEFIHDTIQS 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L +     + +  +      E  +    +  V  ++ N  YE   ++RD  +    
Sbjct: 63  LKNELQKIHSDMEVYHATP----AEAFEQLVKKYTVKAIYTNTDYEPAAIKRDNEISDWA 118

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            Q ++  KSF D V+     IL      Y+VYTP++   ++ L +  +   P        
Sbjct: 119 AQQQIAFKSFKDQVIFEKNEILTDTGAPYRVYTPYKNKWLKKLTENPVTHSPSEKHTDAF 178

Query: 187 P-VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GTSQ 244
             +    I       F       P      L  LRK  +E    Y + RD P ++ GTS 
Sbjct: 179 LRMEAKPIVTLKQLGFTPSSIQIPP-----LETLRKTIQE----YDKTRDYPYLEHGTSL 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           L  +   G +S R+            ++K      +WL+ELIWREF+  L+  +P V   
Sbjct: 230 LGIHFRFGTISIRE-----------KVVKALPLNATWLSELIWREFFMQLLFHFPHVVT- 277

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F     ++EW       + W  G TG+P++DA MR+LNT G MHNR+RM+ ASFL K 
Sbjct: 278 ESFQSKFNRLEWRYSQADFEKWCTGKTGYPLVDAGMRELNTTGHMHNRVRMVVASFLTKH 337

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR GE YF  +LLD DL++NNG WQWAA TG D+ PYFRIFNP  Q ++FDP   +
Sbjct: 338 LFIDWRWGEAYFAQKLLDYDLSANNGNWQWAAGTGADAQPYFRIFNPISQQEKFDPDFIY 397

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           I+ W+PE                     + +Y  PI++HKKA       +   K
Sbjct: 398 IKKWVPEFG-------------------TSSYIEPIIEHKKATERAKLLFSVLK 432


>gi|94498268|ref|ZP_01304828.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
 gi|94422270|gb|EAT07311.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
          Length = 458

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 149/482 (30%), Positives = 234/482 (48%), Gaps = 38/482 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L+W R DLR++D  AL AA   S+  V+ V++   +  RQ  +      +++ SL  
Sbjct: 3   APVLLWFRQDLRLSDQAALIAAA--SEGPVVPVYVLDDDTPRQWVMGGASRWWLHHSLAS 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + ++L +KG      +      S + L +   +    ++     YE      +K + K L
Sbjct: 61  LDRALREKGSRLTLRRGK----SADVLQALAKECGAGRVHALHHYEPWWRNAEKAVAKAL 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                    D  +LLPPG++   +  +YK+YTPF +A+++ +  A     P     +  P
Sbjct: 117 D----LCLHDGILLLPPGAVRTGSGGIYKIYTPFARAVMEQMPPAAPNRTP---ATIDAP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +     R  D+      P +  G        E  A   +  F  E V  Y   R++P++
Sbjct: 170 ESWPETDRLSDWGLLPTKPDWAGGFKKDWTPGEDGARANVAAFIDE-VGDYPTGRNLPSV 228

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GTS+LSP+L  G +SP   W+R+     D  I        +L ELIWR++    +   P
Sbjct: 229 EGTSRLSPHLHYGEVSPAYVWHRVTASNADAEI--------FLKELIWRDYTHTQICEMP 280

Query: 300 SVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +           ++++W           AWK+G TG+PI+DA MRQL T GWMHNR+RMI
Sbjct: 281 AYGSKNA-RDDFDRMDWRDLREARGDFVAWKKGRTGYPIVDAGMRQLWTTGWMHNRVRMI 339

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFL+K LL+DWR G ++F   L+D D A+N+  WQW A +G D+  + RI  P  Q +
Sbjct: 340 AASFLIKHLLIDWRHGAKWFWDTLVDADYANNSVNWQWVAGSGIDANMFSRIMAPLTQSE 399

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FD  G +IR W+PEL  +  + IH P +   + D   +YP  I+ H+      L  Y  
Sbjct: 400 KFDA-GDYIRQWVPELAALSNEVIHDPDAHDARPD---DYPAKIIGHRAGRERALAAYRR 455

Query: 477 AK 478
            K
Sbjct: 456 IK 457


>gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio]
          Length = 598

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 128/498 (25%), Positives = 202/498 (40%), Gaps = 39/498 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL  A + +D  V  V+I  P       +   +  F+  SL  + 
Sbjct: 5   SVHWFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESLEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +    D           +  VT+L +    E     RD  + K  Q 
Sbjct: 64  TSLRKLNSRLSVVRGQPTD----VFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQE 119

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRL--- 184
             V     +   L  P  I+    +M     P      Q +V + +L   P+P I     
Sbjct: 120 YGVETVVRNSHTLYNPDRII----EMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQM 175

Query: 185 --------TGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQ 233
                           +P   +  F+       ++  GE  AL  L K    K +    +
Sbjct: 176 ARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGETEALERLNKHLDRKAWVANFE 235

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R   + Q      + LSPYL  G LS R  +  L++ F+ L  +  S   S   +L+WRE
Sbjct: 236 RPRISGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLR-RRSSPPLSLFGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P+    +   P   +I W+ +   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAGTNNPNFDHMEG-NPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W  S       +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMW-LSCSAFFQQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVD 462
           + P   G+R DP G +IR ++P+L + P +YI+ P +  +         + ++YP P+++
Sbjct: 413 YCPVGFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIVGVDYPKPMIN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H ++    + +     +Q
Sbjct: 473 HAESSRLNIERMKQVYQQ 490


>gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae]
          Length = 961

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 118/494 (23%), Positives = 188/494 (38%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL      +      VFI  P       +   +  F+   L  + 
Sbjct: 6   TVHWFRKGLRLHDNPALREGLRGARTF-RCVFIIDPWFAGSSNVGINKWRFLLQCLDDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L +        +        + L     +   T L +    E     RD  + +  + 
Sbjct: 65  RNLRKLNSRLFVIRG----QPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKE 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKV-YTPFRKALIQNLVQADLRSL-------PVP 180
             +   S     L     I+        + Y  F+  +          +           
Sbjct: 121 LGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGNAN 180

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             +         +P   +  F+      P++  GE  AL  L +  + K +     R   
Sbjct: 181 TPQYDDHDDKYGVPTLEELGFETEALRPPVWIGGETEALARLERHLERKAWVASFGRPKM 240

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             Q      + LSPYL  G LS R  + +L + +    IK      S   +L+WREF+  
Sbjct: 241 TPQSLLASQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKACPPLSLHGQLLWREFFYC 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+        P   +I W++++  L  W  G TGFP IDA M QL   GW+H+  
Sbjct: 299 AATKNPTFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLA 357

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G++ DP G +IR +LP L N PT++IH P +  +      K  +  +YPLP+V+H  A
Sbjct: 417 KFGRKADPNGDYIRRYLPVLKNFPTRFIHEPWNASESVQRAAKCLIGKDYPLPMVNHAIA 476

Query: 467 CHHTLNQYYAAKKQ 480
               + +     + 
Sbjct: 477 SRANMERIKQVYQH 490


>gi|50954649|ref|YP_061937.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951131|gb|AAT88832.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 466

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 152/487 (31%), Positives = 229/487 (47%), Gaps = 39/487 (8%)

Query: 1   MKATTAMS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           M+ T A     +VW R+DLR+ DN AL+AA   S   VI +++   +             
Sbjct: 1   MRKTNADDRPAVVWFRDDLRLADNPALHAAAE-SGRPVICLYVWDEDSPGLRSPGEAARW 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           +++ SL  +++S+ + G               E L     +     +F+NR+Y   E R 
Sbjct: 60  WLHHSLTSLEESIGRAGSALAIRTGPAERVLAEVL----AEVDAGAVFWNRRYGEGERRV 115

Query: 120 DKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D+ ++   +    +  SF  ++L  P ++   +   + VYTPF +A +        R LP
Sbjct: 116 DERVKSAARDTGLVANSFGANLLFEPWTVRTGSGTAFSVYTPFWRACLAR--PEPRRPLP 173

Query: 179 VPAIRLTGPVTPS-NIPRFFDYP-----FQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                  GP  PS  +      P        +   +  GE+ A   L  F  E +  Y  
Sbjct: 174 ALRRLRPGPSLPSLELDELKLLPVHPDWADGLRETWKPGERAAHRELSAFLGEGLARYRA 233

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           +RD+P I  TS+LSP L  G LSP Q W+               GA ++L+EL WREF  
Sbjct: 234 ERDVPGIAATSRLSPRLRWGELSPFQVWHATAAA---RDRSTAEGAATFLSELGWREFAY 290

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           H     P++          +   W +     L+AW+QG TG P++DA MR+L   G MHN
Sbjct: 291 HTYFERPALATVN-IHREYDSFPWPRLHPSALRAWQQGRTGVPLVDAGMRELWRTGVMHN 349

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM+ ASFL K+LL+DWR GE++F   L+D D ASN   WQW A +G D+ PYFR+FNP
Sbjct: 350 RVRMVAASFLTKNLLIDWRRGEQWFWDTLVDADPASNPFNWQWVAGSGADTAPYFRVFNP 409

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
            +Q ++FDP G ++R W+PE +                   + +YP P+VD  +     L
Sbjct: 410 EVQREKFDPHGDYVRRWVPEWD-------------------TADYPEPLVDLAETRRAAL 450

Query: 472 NQYYAAK 478
             +   K
Sbjct: 451 AAWETVK 457


>gi|78778672|ref|YP_396784.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712171|gb|ABB49348.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
           str. MIT 9312]
          Length = 478

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 167/485 (34%), Positives = 235/485 (48%), Gaps = 31/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69
           L W R DLRI DN+AL  A   S+A + + +I        H  SA  ++ F+  SL ++ 
Sbjct: 7   LFWHRKDLRIFDNQALIKAFSLSNA-ITSTYILDRNY--THDFSANSRAWFLGDSLQELG 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +  + G      +     D +  +           + +N+  E  E+ RD  ++K L+ 
Sbjct: 64  NNWEKMGSRLVIEEG----DPVLIIPQLAKTIDAKFVIWNKTIEPYEINRDLQIKKNLKE 119

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL------------VQADLRS 176
           + I      D +L+ P  I +   + Y VY PF K L   +             Q     
Sbjct: 120 KNIQVIESWDHLLVEPLKIFSGNNKPYSVYGPFYKNLKSKMNLLGLYDQDKVIFQFKDID 179

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKV-YYYVEQR 234
             +   +L      +      +  F   +      GE  A  +L KF  EK  Y Y   R
Sbjct: 180 NKLKENKLINSSDSTLKKFLKNIKFSGSNICPCRPGENGAEILLEKFINEKNIYSYNSAR 239

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRH 293
           D+P+  GTS LS  L  G +S R+ WN   +   D      S    +W  EL+WREFY+H
Sbjct: 240 DLPSHNGTSFLSASLRFGTISIRKVWNATLDLNSDFESHENSLSIETWQKELVWREFYQH 299

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +  +P +  G P+     +  W  ++   Q W  G TG PI+DAAMRQLN+ GWMHNR 
Sbjct: 300 CLFHFPELEKG-PYRKKWGQFPWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNRC 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFLVKDL+  W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  
Sbjct: 359 RMIVASFLVKDLICSWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYT 417

Query: 414 QGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           Q K+FDP   +I+ W+PEL+ V     ++   S L+KN    NY  PIVDH        +
Sbjct: 418 QAKKFDPICEYIKSWIPELSKVSNSDLLNGEISNLEKN----NYSTPIVDHNIQQRLFKS 473

Query: 473 QYYAA 477
            Y   
Sbjct: 474 LYAEI 478


>gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio]
 gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio]
          Length = 598

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 128/498 (25%), Positives = 202/498 (40%), Gaps = 39/498 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL  A + +D  V  V+I  P       +   +  F+  SL  + 
Sbjct: 5   SVHWFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESLEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +    D           +  VT+L +    E     RD  + K  Q 
Sbjct: 64  TSLRKLNSRLFVVRGQPTD----VFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQE 119

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRL--- 184
             V     +   L  P  I+    +M     P      Q +V + +L   P+P I     
Sbjct: 120 YGVETVVRNTHTLYNPDRII----EMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQM 175

Query: 185 --------TGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQ 233
                           +P   +  F+       ++  GE  AL  L K    K +    +
Sbjct: 176 ARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVWKGGETEALERLNKHLDRKAWVANFE 235

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R   + Q      + LSPYL  G LS R  +  L++ F+ L  +  S   S   +L+WRE
Sbjct: 236 RPRISGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDLFMKLR-RRSSPPLSLFGQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P+    +   P   +I W+ +   L  W +G TGFP IDA M QL   GW+
Sbjct: 295 FFYTAGTNNPNFDHMEG-NPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWI 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W  S       +F  
Sbjct: 354 HHLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSVNAGSWMW-LSCSAFFQQFFHC 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVD 462
           + P   G+R DP G +IR ++P+L + P +YI+ P +  +         + ++YP P+++
Sbjct: 413 YCPVGFGRRTDPSGDYIRRYIPKLKDYPNRYIYEPWNAPESVQKAANCIVGVDYPKPMIN 472

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H ++    + +     +Q
Sbjct: 473 HAESSRLNIERMKQVYQQ 490


>gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina]
          Length = 600

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 141/507 (27%), Positives = 221/507 (43%), Gaps = 35/507 (6%)

Query: 1   MKATTA--MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISAR 56
           M +T++      ++W R  LR+ DN AL  AC    A V  +FI  P   ++    +   
Sbjct: 40  MASTSSGQQGRSILWFRKGLRLHDNPALRDAC-TGSAAVFPIFIIDPYFLQKSNNKVGVN 98

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F+  SL  +  SL+  G      + +      E +        + KL Y    E   
Sbjct: 99  RYQFLLESLSDLNSSLTSLGSQLLVLRGTPE----EVIPRVLRDWSIKKLCYEIDTEPYA 154

Query: 117 VRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
             RD  ++   +   V  K      L     ++        +     + L+   V   L 
Sbjct: 155 KARDARVDDMAREAGVEVKKHWSHTLYDTDMLVRENKGKAPLTMQAFEKLVDR-VGHPLT 213

Query: 176 SLPVPAIRLTG--------PVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEK 226
           +LP P  RL                +P + +  F +A   +F  GE  AL  L  + K+ 
Sbjct: 214 ALPAPTARLPPVDVSLPGIKDAEVGVPTWQEMGFKEAPTAIFKGGETEALKRLEHYMKDT 273

Query: 227 VY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
            +   + +    P+      T+ LSPYL  G LS R    RL + +  L  K      S 
Sbjct: 274 KWXASFEKPSTDPSAFTEPSTTALSPYLKFGCLSARFFHQRLLDVYR-LHPKHSQPPMSL 332

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
             +L+WREF+  L +  P+        P   +I W+ +  LL+AW+ G TG+P IDAAM 
Sbjct: 333 RGQLLWREFFYTLGSHTPNFDR-IAGNPICRQITWDTNPALLKAWRDGATGYPWIDAAMT 391

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GWMH+  R   A FL + DL + W  G+E F   LLD D   N   W W +++  
Sbjct: 392 QLREWGWMHHLARHSVACFLTRGDLYLSWESGKEVFEELLLDADYFINAANWMWLSASAF 451

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSL 454
            +  YFR+++P + GK++D +G +IR +LP L ++P +YI+ P +   +        +  
Sbjct: 452 FAQ-YFRVYSPVVFGKKYDKEGAYIRKFLPVLKDMPAKYIYEPWTAPKEVQQRANCIIGR 510

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +YP PIVDH  A    + +  AA K +
Sbjct: 511 DYPAPIVDHAVASKECIARMGAAYKAT 537


>gi|21327675|gb|AAC37438.2| CPH1 [Chlamydomonas reinhardtii]
          Length = 1008

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 219/472 (46%), Gaps = 23/472 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              +VW R DLR+ D      A   +   VI VFI  PE+  Q         +   SL+ 
Sbjct: 6   KTAVVWFRRDLRVDD-NPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVD 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q++L+  G      + +   DS   L     +     +F+N  Y+   + RD   ++ L
Sbjct: 65  LQQALAALGSRLVIRRST---DSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGL 121

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               V  ++F+  +L  P  +L+   Q Y  +  F  ++    V          ++    
Sbjct: 122 TAAGVAHRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSVRAMPVPPPFPVSAPASMPAVP 181

Query: 187 PVTPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              PS      D+ F              +  G   A+  L  F  E++  +   R    
Sbjct: 182 AAVPSMTVAEVDWFFTPEQEASSDQLKFKWKPGVGGAISELEHFLAERLTEFEHDRAKVD 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHLM 295
              TS+LSP++ IG +S R  + R+++   + L      A S   +L ++ +RE+ R+L 
Sbjct: 242 RDSTSRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYREYSRYLA 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W  D H  +AW+QG TG+PI+DAAMRQL + GW HNR R+
Sbjct: 302 FHFP-FIHERSLLGHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRGRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFLVKDLL+ W+ G +++    +D DL  +  GWQ+ +   +D+ P+  + +   + 
Sbjct: 361 VAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEA 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461
           +RFDP G ++R WLP L+ +PT+YIHAP             +L  NYPLPI+
Sbjct: 421 RRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPII 472


>gi|161138112|gb|ABX58027.1| cryptochrome 1a [Triticum aestivum]
          Length = 700

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 140/510 (27%), Positives = 235/510 (46%), Gaps = 34/510 (6%)

Query: 1   MKATTAMS---------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51
           M A+ +MS           +VW R DLR+ DN A  AA   +  +V+  ++  P++   +
Sbjct: 1   MSASPSMSGGAGERTRTRTVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWAPKEDGPY 59

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
                   ++  SL  +  SL + G      + S   D++  L         T LF+N  
Sbjct: 60  YPGRVSRWWLSQSLKHLDASLRRLGATRLVTRRST--DTVAALLELVRSTGATHLFFNHL 117

Query: 112 YEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
           Y+   + RD  +++ L    +  +SF+  +L  P  +L+     + ++TPF    +  + 
Sbjct: 118 YDPLSLVRDHRVKQVLGAEGITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTCLCMVD 177

Query: 171 QADLRSLP--VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCK 224
                  P  + +  L+   +  ++  F D   +  + +    +  G QNA      F  
Sbjct: 178 PPAPMLPPKRINSGELSRCCSSDDLI-FEDESERGSNALLARAWSPGWQNADKAFTAFIN 236

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFS 280
             +  Y   R       TS LSPYL  G LS R+ +++++ +      +     + G   
Sbjct: 237 GPLIDYSVNRKKADSANTSLLSPYLHFGELSVRKVFHQIRMKQLTWSNESNGDGEEGCSL 296

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           +L  +  RE+ R L   +P     KP +       W  +    + W+QG TG+P++DA M
Sbjct: 297 FLRSIGLREYSRRLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGM 355

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  
Sbjct: 356 RELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLP 415

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSL 454
           D     RI NP  +G +FDP G ++R WLPEL  +PT++IH P    +        +L  
Sbjct: 416 DGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPESVLRAAGIELGS 475

Query: 455 NYPLPIVDHKKACHH---TLNQYYAAKKQS 481
           NYPLPIV+  +A       L++ +  +  S
Sbjct: 476 NYPLPIVELDEAKSRLQDALSEMWELEAAS 505


>gi|159487060|ref|XP_001701553.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
 gi|158271494|gb|EDO97311.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
          Length = 1008

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 220/472 (46%), Gaps = 23/472 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              +VW R DLR+ D      A   +   VI VFI  PE+  Q         +   SL+ 
Sbjct: 6   KTAVVWFRRDLRVDD-NPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVD 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +Q++L+  G      + +   DS   L     +     +F+N  Y+   + RD   ++ L
Sbjct: 65  LQQALAALGSRLVIRRST---DSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGL 121

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               V  ++F+  +L  P  +L+   Q Y  +  F  ++    V          ++    
Sbjct: 122 TAAGVAHRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSVRAMPVPPPFPVSAPASMPAVP 181

Query: 187 PVTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              PS      D+ F          +   +  G   A+  L  F  E++  +   R    
Sbjct: 182 AAVPSMTVAEVDWFFTPEQEASSDQLKFKWKPGVGGAISELEHFLAERLTEFEHDRAKVD 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---WLNELIWREFYRHLM 295
              TS+LSP++ IG +S R  + R+++   + L      A S   +L ++ +RE+ R+L 
Sbjct: 242 RDSTSRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRAQSCDDFLQQMGYREYSRYLA 301

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       W  D H  +AW+QG TG+PI+DAAMRQL + GW HNR R+
Sbjct: 302 FHFP-FIHERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRGRV 360

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFLVKDLL+ W+ G +++    +D DL  +  GWQ+ +   +D+ P+  + +   + 
Sbjct: 361 VAASFLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEA 420

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV 461
           +RFDP G ++R WLP L+ +PT+YIHAP             +L  NYPLPI+
Sbjct: 421 RRFDPDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPII 472


>gi|124514880|gb|EAY56391.1| Deoxyribodipyrimidine photolyase [Leptospirillum rubarum]
          Length = 536

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 150/477 (31%), Positives = 232/477 (48%), Gaps = 27/477 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW RN+LR++DN  L  A       ++ VFI  P +       AR       SL  + 
Sbjct: 64  SIVWFRNNLRLSDNPPLREAAERG--PLLPVFIGEPSR-GASPEGARHWWRA-RSLRCLD 119

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SLS+ G    + +     D    L     + ++ K+      + +  R    L+  L  
Sbjct: 120 HSLSRLGAPLLFLRG----DPAILLPDLATRLKIDKILAMEAIDPDGRRTQSRLQSALSG 175

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-----VPAIR 183
           + V    F    L+PP  +       +KV+TPF +    +L        P     +P  R
Sbjct: 176 KPVEFHLFPADYLVPPAGLPAERRSPWKVFTPFWQRAQSHLPPPLPLPAPDRLDGIPFPR 235

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              P      P   D+  + +   +  GE+ A   L  F ++++  Y  +RD      +S
Sbjct: 236 SETPEDWGWEPEKPDWAAE-MRSFWDPGEEGARRRLNAFLEKRLKNYAVKRDFLDEDTSS 294

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L+ G +S R  W  ++E        P+     +L+EL WREF  HLM  +P +  
Sbjct: 295 LLSPHLANGEISIRSVWWSIRE-----STAPEEDRAKFLSELGWREFSAHLMWHHPDLAT 349

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +P      +I W +D   L AW++G TG P++DA MRQL  +G++ NR+RM+  SFLVK
Sbjct: 350 -QPLQKGRPEIAWREDPSSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAGSFLVK 408

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR G E+F   L+D D A+N   WQW +  G D+ P+FRIFNP +QG++FDP+G 
Sbjct: 409 NLLIDWRKGREWFSDNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKFDPEGR 468

Query: 424 FIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLNYPL--PIVDHKKACHHTLNQY 474
           +++ +LPEL  +P +Y+H P     S LD   +  + P   PIVD   +    L  +
Sbjct: 469 YVKTYLPELARIPPRYLHCPWTAPSSLLDNAGIGKDSPYRNPIVDLGLSRKRALQAW 525


>gi|254485504|ref|ZP_05098709.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
 gi|214042373|gb|EEB83011.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
          Length = 465

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 223/480 (46%), Gaps = 35/480 (7%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+TD+ AL AA       VI VFI         G+ A     +   +     +
Sbjct: 1   MWFRRDLRLTDHPALSAAAQTG-RPVIPVFIRDDAVA---GLGAAPKWRLGLGIGAFDDA 56

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HR 130
           L +K       +     D++E L     +     ++++R Y+     RD  +++ L+   
Sbjct: 57  LREKSSRLILRKG----DALEVLQDLIKETGAGAVYWSRLYDPQATARDADIKEALKGAD 112

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V  +SF   ++  P ++       YKVYTPF  A+    V A L +       LT P T 
Sbjct: 113 VEARSFGGHLMFEPWTVETKTGGNYKVYTPFWNAVKNTGVDAPLSA----PKNLTAPDTW 168

Query: 191 SNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                  ++            + P   +GE++A   L  F    V  Y   RD+P + GT
Sbjct: 169 PRSDDLAEWTMGGAMQRGADVVRPFVQLGEKSAQSRLGAFMAHGVADYKANRDLPGVDGT 228

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS  L++G +SP QCW+  +    D     K GA ++L EL+WREF  HLM   P + 
Sbjct: 229 SNLSENLALGEISPHQCWHAGQRALHD----GKQGAETFLKELVWREFAYHLMHHSPRIL 284

Query: 303 MGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +    +   WN+D  L  ++AWK G TG P +DAAMR+L   G MHNR RMI AS+
Sbjct: 285 TDN-WREEWQAFPWNEDERLAEVKAWKHGRTGEPFVDAAMRELYVTGRMHNRGRMIVASY 343

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L+  WRIG+++F   L+D D ASN  GWQWAA +G D+ PYFR+FNP  Q  +FD 
Sbjct: 344 LTKHLMCHWRIGQKWFEDCLIDWDPASNAMGWQWAAGSGPDATPYFRVFNPATQLDKFDK 403

Query: 421 QGTFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
              +   W+ E    P       +   P  W      S +YP  IV   +     L  Y 
Sbjct: 404 NRDYTSRWIAEGRANPHADALRFFDAIPKRWNLSA--SDDYPDRIVALDEGRERALENYK 461


>gi|254468959|ref|ZP_05082365.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
 gi|207087769|gb|EDZ65052.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
          Length = 429

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 151/430 (35%), Positives = 226/430 (52%), Gaps = 20/430 (4%)

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           + ++  FIY  L  ++++L + G          F D +  +           +F NR YE
Sbjct: 8   NDQRVDFIYQVLQDIKQTLKKYGSDIWIL----FGDPVHEIPKLAESINANAIFVNRDYE 63

Query: 114 INEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              V RD  ++K+L       +SF D VL     I+      Y V++P+R   ++ L+ +
Sbjct: 64  KYGVNRDNDVQKKLSELNKTFQSFKDQVLFEADEIVTKNNTHYSVFSPYRNNHLEKLLIS 123

Query: 173 DLRSLPVPAIRLT-GPVTPSNIPRFFDYPFQAID-PMFPIG--EQNALHILRKFCKEKVY 228
                      +T        +    D  F + +   F I    Q+    + +F K+++ 
Sbjct: 124 GSGVSSYKLDDITFEKFNIDKMLTLDDIGFNSSNISSFQIATTHQDIQKQINEF-KDRLE 182

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           +Y + R+ PAI+G S LS +   G +S R+  N   + +        SG+ SWLNELIWR
Sbjct: 183 HYDQTRNFPAIKGVSYLSVHNRFGTISIREMANICLQNYA------TSGSKSWLNELIWR 236

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +FY  ++  +  V  G  F    + +++  +    ++WKQG TGFPI+DAAMRQLNT G+
Sbjct: 237 DFYFQIIVNFSHVQDGHSFKLQYDNLQYENNESFFESWKQGMTGFPIVDAAMRQLNTTGY 296

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           MHNRLRMI ASFL KDLL+DWR GEEYF  +L+D D ++NNGGWQWAAS G D+ P+FRI
Sbjct: 297 MHNRLRMIVASFLTKDLLIDWRWGEEYFKEKLIDYDFSANNGGWQWAASVGCDAQPWFRI 356

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           FNP +Q ++FD  G FI+ ++PEL+    + IH PH+         +YP PI+DH     
Sbjct: 357 FNPLLQSQKFDSDGKFIKKYVPELSEFDKKNIHEPHAKFTP----KDYPKPIIDHATQRP 412

Query: 469 HTLNQYYAAK 478
             L  +    
Sbjct: 413 KALKMFEHVN 422


>gi|115446841|ref|NP_001047200.1| Os02g0573200 [Oryza sativa Japonica Group]
 gi|46806340|dbj|BAD17529.1| cryptochrome 1a [Oryza sativa Japonica Group]
 gi|113536731|dbj|BAF09114.1| Os02g0573200 [Oryza sativa Japonica Group]
          Length = 718

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 142/499 (28%), Positives = 229/499 (45%), Gaps = 24/499 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    +VW R DLR+ DN A  AA   +  +V+ V++  PE+   +        ++ 
Sbjct: 13  AGEAGVRTVVWFRRDLRVEDNPA-LAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLS 71

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL + G      + S   D++  L         T LF+N  Y+   + RD  
Sbjct: 72  QSLKHLDASLRRLGASRLVTRRSA--DAVVALIELVRSIGATHLFFNHLYDPLSLVRDHR 129

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--V 179
           ++  L    +  +SF+  +L  P  +++     + ++ PF    +     A     P  +
Sbjct: 130 VKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPPKRI 189

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRD 235
               L     PS+   F D   +  + +    +  G QNA   L  F    +  Y   R 
Sbjct: 190 APGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRK 249

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFY 291
                 TS LSPYL  G LS R+ +++++ +      +           +L  +  RE+ 
Sbjct: 250 KADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLREYS 309

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R+L   +P   + KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+
Sbjct: 310 RYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHD 368

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP
Sbjct: 369 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNP 428

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465
            ++G +FDP G ++R WLPEL  +PT++IH P    +        +L  NYPLPIV+   
Sbjct: 429 QLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDA 488

Query: 466 ACHH---TLNQYYAAKKQS 481
           A       L++ +  +  S
Sbjct: 489 AKTRLQDALSEMWELEAAS 507


>gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus]
          Length = 618

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 204/501 (40%), Gaps = 38/501 (7%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W+R  LR+ DN+AL      +D     V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWVRQGLRLPDNRALREVIQGADTA-RCVYILDPSFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  +TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LASEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITA 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T PV+  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVMSKCTTPVSDDHDEKCGVPSLEELGFDTGGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R            + LSPYL  G LS R  + +L + +  +  K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 351 GWIHHLARRAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQF 409

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLP 459
           F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCVIGVNYPKP 469

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 470 MVNHTEASRLNIERMKQIYQQ 490


>gi|16444957|dbj|BAB70686.1| cryptochrome 1a [Oryza sativa Japonica Group]
          Length = 710

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 142/499 (28%), Positives = 229/499 (45%), Gaps = 24/499 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    +VW R DLR+ DN A  AA   +  +V+ V++  PE+   +        ++ 
Sbjct: 13  AGEAGVRTVVWFRRDLRVEDNPA-LAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLS 71

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL + G      + S   D++  L         T LF+N  Y+   + RD  
Sbjct: 72  QSLKHLDASLRRLGASRLVTRRSA--DAVVALIELVRSIGATHLFFNHLYDPLSLVRDHR 129

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--V 179
           ++  L    +  +SF+  +L  P  +++     + ++ PF    +     A     P  +
Sbjct: 130 VKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPPKRI 189

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRD 235
               L     PS+   F D   +  + +    +  G QNA   L  F    +  Y   R 
Sbjct: 190 APGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSVNRK 249

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFY 291
                 TS LSPYL  G LS R+ +++++ +      +           +L  +  RE+ 
Sbjct: 250 KADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLREYS 309

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R+L   +P   + KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+
Sbjct: 310 RYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWLHD 368

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP
Sbjct: 369 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNP 428

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465
            ++G +FDP G ++R WLPEL  +PT++IH P    +        +L  NYPLPIV+   
Sbjct: 429 QLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDA 488

Query: 466 ACHH---TLNQYYAAKKQS 481
           A       L++ +  +  S
Sbjct: 489 AKTRLQDALSEMWELEAAS 507


>gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei]
          Length = 606

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 124/503 (24%), Positives = 198/503 (39%), Gaps = 33/503 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M      SVH  W R  LR+ DN +L AA   +   V  V+I  P       +   +  F
Sbjct: 30  MAVDGGSSVH--WFRKGLRLHDNPSLLAAVRGARC-VRCVYILDPWFAASSSVGINRWRF 86

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL +        +        +       +  VT+L +    E     RD
Sbjct: 87  LLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERD 142

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL---- 174
             + K  +   V   + +   L     I++   Q     Y  F+  + +  +        
Sbjct: 143 AAIMKMAKEAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAV 202

Query: 175 ---RSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVY 228
              +     A           +P   +  F  + + P  +  GE  AL  L K  + K +
Sbjct: 203 TSQQMESCRAEIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAW 262

Query: 229 YYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               +R            + LSPYL  G LS R  + RL + +  +  +  +   S   +
Sbjct: 263 VANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQ 321

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL 
Sbjct: 322 LLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLR 380

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GW+H+  R   A F  + DL V W  G   F   LLD D + N G W W  S      
Sbjct: 381 QEGWIHHLARHAVACFPTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQ 439

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYP 457
            +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      +  + ++YP
Sbjct: 440 QFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAARCIIGVDYP 499

Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480
            P+V+H +     + +     +Q
Sbjct: 500 RPMVNHAETSRLNIERMKQIYQQ 522


>gi|307354928|ref|YP_003895979.1| deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM
           11571]
 gi|307158161|gb|ADN37541.1| Deoxyribodipyrimidine photo-lyase [Methanoplanus petrolearius DSM
           11571]
          Length = 475

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 159/483 (32%), Positives = 233/483 (48%), Gaps = 29/483 (6%)

Query: 1   MKATT-AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQS 58
           M   T ++S H+     DLRI DN  L +A  +S++ VI  F A          +   + 
Sbjct: 1   MPEKTFSLSAHI--FTRDLRIDDNPPLLSALASSES-VITFFAAEKNLATENPALCENRL 57

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  SL  +  ++++KG   ++     +D+    L     +  V  ++  R Y    ++
Sbjct: 58  AFLSESLSDLSGAIAEKGGEIRF-----YDEGALKLAEKLCRTGVEAVYMTRDYTPYAIK 112

Query: 119 RDKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRS 176
           R+  L+K              ++L  P  +     + YKV+TPF R A +  + + +  +
Sbjct: 113 RENSLKKTCNDAGCSFFPVPGALLNEPEDVRKSDGEPYKVFTPFYRNASLIPVHEPETCT 172

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
               +          +IP       +A +  F  G    L +L +    ++  Y ++RD 
Sbjct: 173 FQNFSREELFDGASHDIPFGKSGTEEAKNRAFSGGRSEGLRLLGE--TGRLKNYEDERDF 230

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           PA   TS LS +L  G +S R+   R+ +                + +L WR+F+ H+  
Sbjct: 231 PAKACTSMLSAHLRFGTVSVREICRRISDTL--------GPGHGLIRQLYWRDFFTHIAY 282

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            YP V  G PF    E + W     L   W +G TGFPIIDA MR+LN  G+MHNR R+ 
Sbjct: 283 HYPHVFKG-PFQKRFESLHWTDSKELFDKWCKGMTGFPIIDAGMRELNDTGYMHNRERLA 341

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            ASFLVKDL +DWR GE YF S+L D D + NNG WQW+ASTG D+ PYFRIFNP +Q K
Sbjct: 342 AASFLVKDLHIDWRSGERYFASKLTDYDPSVNNGNWQWSASTGCDAQPYFRIFNPWLQQK 401

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND--LSLNYPLPIVDHKKACHHTLNQY 474
           +FDP   +IR W+PEL+++  + IH     LDK        YP PIVDHK         Y
Sbjct: 402 KFDPDCIYIRRWVPELSDLEPKEIHN----LDKTGSVPPAGYPNPIVDHKNEARAAKIIY 457

Query: 475 YAA 477
             A
Sbjct: 458 SGA 460


>gi|302772136|ref|XP_002969486.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii]
 gi|300162962|gb|EFJ29574.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii]
          Length = 494

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 135/485 (27%), Positives = 222/485 (45%), Gaps = 26/485 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             S  +VW R DLR+ DN     A  +    V+ +FI   E+  +         ++  SL
Sbjct: 2   GSSTTIVWFRRDLRVEDNP--ALAAASKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +  SL++ G      +  +   S+  L       + T++FYN  Y+   + RD  ++ 
Sbjct: 60  MHLNSSLTKLGCPLLMQK--SRGSSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKH 117

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L Q+ +  ++F+  +L  P  + +     Y  +  F +  +    + D   LP   +  
Sbjct: 118 GLSQYGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLPPKRLSP 177

Query: 185 TGPV------TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234
                      P+      D   ++ + M    +  G  NA   L  F    +  Y + R
Sbjct: 178 PAEPGLGHLGLPAEELGLEDDFEKSSNAMLARTWTPGWSNANKSLDAFLAGPLADYGDNR 237

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREF 290
                  TS LSP+L  G LS R+ ++ ++ +      D     +  A  +L  L +RE+
Sbjct: 238 GKVDGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREY 297

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R+L   +P     +  +       W  D    +AW+QG TG+P++DA MR+L   GW+H
Sbjct: 298 SRYLCFHFP-FTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLH 356

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+R+I +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     R+  
Sbjct: 357 NRIRVIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEI 416

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHK 464
           P I+G+RFDP G ++R WLPEL+ +PT++IH P +           +L  NYP P+V+  
Sbjct: 417 PHIEGRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVEIA 476

Query: 465 KACHH 469
            A   
Sbjct: 477 AARER 481


>gi|77963980|gb|ABB13331.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
 gi|77963982|gb|ABB13332.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
 gi|77963984|gb|ABB13333.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
          Length = 712

 Score =  359 bits (922), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 143/490 (29%), Positives = 229/490 (46%), Gaps = 23/490 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN A  AA   +  +V+  ++ +PE+   +        ++  SL  ++ 
Sbjct: 18  VVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWSPEEDGPYFPGRVSRWWLSQSLKHLEA 76

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
           SL + G      + S   DS+  L         T LF+N  Y+   + RD  L++ L   
Sbjct: 77  SLHRLGAGKLVTRRSA--DSVAALLQLVRDTGATHLFFNHLYDPISLVRDHRLKEMLTSE 134

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-PV 188
            ++ +SF+  +L  P  + +   Q + ++ PF    +          LP   I      +
Sbjct: 135 GIVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRINSGDLSM 194

Query: 189 TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            PS+   F D   +  + +    +  G QNA   L  F    +  Y   R       TS 
Sbjct: 195 CPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSANTSL 254

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPS 300
           LSPYL  G LS R+ ++ ++ + +    +    A      +L  +  RE+ R+L   +P 
Sbjct: 255 LSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCFNHP- 313

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 314 CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 373

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+ + +  DS     I NP ++G +FDP
Sbjct: 374 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDP 433

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC---HHTL 471
            G ++R WLPEL  +PT++IH P             +L  NYPLPIV+   A       L
Sbjct: 434 HGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRLQEAL 493

Query: 472 NQYYAAKKQS 481
           ++ +  +  S
Sbjct: 494 SEMWQLEAAS 503


>gi|84517100|ref|ZP_01004456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
 gi|84508995|gb|EAQ05456.1| deoxyribodipyrimidine photolyase [Loktanella vestfoldensis SKA53]
          Length = 471

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 151/478 (31%), Positives = 224/478 (46%), Gaps = 26/478 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  +VW+R DLR+ D+ AL AAC +    VIAV+I   +     G    +      +L Q
Sbjct: 4   TPIIVWVRRDLRLADHPALTAACESGQ-PVIAVYIHDDQVASLGGAQKLRLDL---ALAQ 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             K+L+ +G      +          L     +     ++++R Y      RD  ++  L
Sbjct: 60  FGKTLADRGSRLILRKGPALG----VLRDLIRETGAGAVYWSRLYHATANDRDAAVKSAL 115

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   I  +SF   +L  P ++       YKVYTP   A+  N V   L            
Sbjct: 116 KADGIVARSFTGHLLFEPWTVATKTGGFYKVYTPMWNAVRGNEVAEPLPCPAKITAPAVW 175

Query: 187 PVTP----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           P +       + R        +     +GE  A   L  F  ++V  YV+ RD+PAI+GT
Sbjct: 176 PASDALADWQLRRAMQRGGDILARHCTVGEDAARDRLGAFIADRVANYVKGRDLPAIKGT 235

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS  L+ G +SPR CW+  +    D     K+ A  +L EL+WREF  HL    P + 
Sbjct: 236 SNLSENLTFGEISPRMCWHAGQRALRD----GKADAEVFLKELVWREFAYHLAHHTPRIL 291

Query: 303 MGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
               +    +   WN   +  + AW+QG TG P +DAAMR++   G MHNR RMI AS+L
Sbjct: 292 TDN-WKEDWDAFPWNTQITPEVAAWQQGRTGIPFVDAAMREMYVTGTMHNRGRMIVASYL 350

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL  W++G ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q  +FD  
Sbjct: 351 TKHLLTHWKVGLDWFADHLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFDKD 410

Query: 422 GTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
             +++ W+ E    P           P SW  + D +  YP P+V  ++     L+ Y
Sbjct: 411 RAYVKRWIAERYRSPQDSALTYFEMIPQSWQMRPDAA--YPDPVVTPEQGRTRALDAY 466


>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
 gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
          Length = 476

 Score =  359 bits (921), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 154/483 (31%), Positives = 219/483 (45%), Gaps = 27/483 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ D+  L  A   + A+V+ VF+  P   R    S  ++ F+   L +
Sbjct: 4   STAIVWFRRDLRLHDHPPLVRALA-AHARVVPVFVLDPAIVRGRFASGARTAFMLDCLRE 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L ++G      +     +    L +   +     + +        + RD+ +   L
Sbjct: 63  LDADLRERGSGLVVREGRPERE----LPALAREIGAAAVHWASDATPYAIARDRRVRSAL 118

Query: 128 QHRVICKSF---DDSVLLPPGSILNHALQMYKVYTPFRKALIQ---NLVQADLRSLPVPA 181
                  +      + +   G     A   Y V+TPF +A  Q     V      LP   
Sbjct: 119 AAAQPAVAAVPGPGNFVADVGRPRTRAGGPYTVFTPFHRAWQQLERRTVHRTPAVLPPLP 178

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             L     PS                   GE+ A     ++    +  Y    D  A  G
Sbjct: 179 AGLRRGALPSLAALGLTDELSPTARAVEPGERAARRAAERWLDGHLGDYARDHDRLAG-G 237

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSPYL  G LS R+C  R          +   GA +++ +L WR+FY H++  +P  
Sbjct: 238 TSALSPYLHHGCLSARECEQRAVR-------RGGEGAEAFVRQLAWRDFYAHVLLHHPE- 289

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            + +        + W +D  LL AW+ G TGFP++DA MRQL   GWMHNR R++T SFL
Sbjct: 290 DVRREHQERMRALRWERDDELLAAWQDGRTGFPLVDAGMRQLRASGWMHNRARLVTGSFL 349

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDP 420
            KDL +DWR GE +FM  LLDGD+ASNNG WQW AS G D  P F RI NP +Q +R DP
Sbjct: 350 TKDLQLDWRAGEAWFMRWLLDGDVASNNGNWQWIASVGVDPAPAFRRILNPALQQRRHDP 409

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474
            G ++R W+PEL  VP   +  P    ++        +  +YP PIVDH       L +Y
Sbjct: 410 DGAYVRRWVPELARVPDALLTEPWLMSEQQQRAAGCRIGADYPAPIVDHAHERRRALERY 469

Query: 475 YAA 477
            AA
Sbjct: 470 RAA 472


>gi|145224666|ref|YP_001135344.1| deoxyribodipyrimidine photo-lyase [Mycobacterium gilvum PYR-GCK]
 gi|145217152|gb|ABP46556.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium gilvum
           PYR-GCK]
          Length = 449

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 149/474 (31%), Positives = 232/474 (48%), Gaps = 31/474 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ D  AL AA    D  V+A ++  P         +R+  ++Y +L  +
Sbjct: 2   PAVLWFRRDLRLADLPALVAAAE-VDGDVLACYVLDPRLKAT--GGSRRLQYLYDALRDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++SL  + ++          D +  +         + +  +  +    +RRD+ +   L 
Sbjct: 59  RESLDGRLLI-------TRGDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALG 111

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   +     L+ PG +       YKV+TPF  A  Q+  +    S P P+     P 
Sbjct: 112 D-VELVATGSPYLVSPGRVTKGDGSPYKVFTPFFDAWRQHGWRPPAESGP-PSAHWLDPA 169

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             +  P   D P   ++   P GE  A    ++F  + +  Y E R+ P +  TS++S +
Sbjct: 170 DVAGKPGITDIPDAGVELDLPAGETAARRQWKQFVDDGLAGYAEDRNRPDLAATSRMSAH 229

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G + PR              +    GA ++L EL +R+FY  ++A +P       + 
Sbjct: 230 LKFGTIHPRTL---------AADLGRGKGAQAYLRELAFRDFYAAVVAEWPRSTWWN-WN 279

Query: 309 PWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              + IE +         +AWK G TGFPI+DA MRQL   G++HNR+RMI ASFLVKDL
Sbjct: 280 STFDAIEVDDGPDAQRAFEAWKAGRTGFPIVDAGMRQLAETGFVHNRVRMIVASFLVKDL 339

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W+ G  +F+ QL DGD+A+N  GWQWAA  G D+ PYFR+FNPT QGK+FDP G ++
Sbjct: 340 HLPWQWGARWFLDQLTDGDMANNQHGWQWAAGCGTDAAPYFRVFNPTTQGKKFDPAGVYV 399

Query: 426 RHWLPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + W+ EL +V +   +H         D   +YP PIVDH +     L +Y + +
Sbjct: 400 KRWVEELRDVASSVDVHN-----LDRDRPADYPEPIVDHAQERAEALRRYNSLR 448


>gi|88808070|ref|ZP_01123581.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
 gi|88788109|gb|EAR19265.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
          Length = 492

 Score =  358 bits (920), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 160/500 (32%), Positives = 224/500 (44%), Gaps = 37/500 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW----RQHGISARQSHFI 61
           A +  L W R DLR+ DN  L AA     A V  V++  P       +   ++  +  F+
Sbjct: 2   ASARTLFWHRRDLRLADNTGLQAAVALGPA-VTGVYVLDPSIITPPPQLPPMAPARLWFL 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL+++Q+   + G      Q     D +  L         + + ++R  E     RD+
Sbjct: 61  VESLIELQERWREAGSRLLVLQG----DPLTLLPQLAALLDSSTVVWSRDVEPYARERDR 116

Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            + K LQ          D +L+ P  +       Y+VY PF +     + +    ++  P
Sbjct: 117 GVAKALQADGRQVLVDWDQLLVAPELLKTGNGDPYRVYGPFLRNWRGQVERLRPSTVAAP 176

Query: 181 A--------IRLTGPVTPSNIPRFFDYPFQAIDPMFP-------------IGEQNALHIL 219
                     +     T + + R +    QA+  +                GE  A+  L
Sbjct: 177 TDLQDLTAEQQQAIRSTETALGRLWADGQQALQRLQTEHGFAGMDLCPCRPGEVAAVDQL 236

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGA 278
             F    +  Y   R+ P   GTS LS  LS+G LSPRQ W   +    +    + +   
Sbjct: 237 AVFADGPLLGYEPDRNFPGTAGTSGLSAALSVGTLSPRQAWCAAQAAKDLARSDEQRQAI 296

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
             W  EL WREFY+  +  +P +  G P+     +  W  +      WK G TG PIIDA
Sbjct: 297 AVWEQELAWREFYQQALFHFPELADG-PYREQWRRFPWENNEDWFDFWKDGQTGMPIIDA 355

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           AMRQL   GWMHNR RMI ASFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+
Sbjct: 356 AMRQLQQSGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASS 415

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           G D  P  RIFNP  Q  +FD  G +IR W+PEL +V T+ +    S          YP 
Sbjct: 416 GMDPKP-LRIFNPATQASKFDADGDYIRRWVPELRHVSTKDL---LSGEIGALERRGYPE 471

Query: 459 PIVDHKKACHHTLNQYYAAK 478
           P+V+HK         Y   K
Sbjct: 472 PLVNHKIQQAKFKVLYATIK 491


>gi|86608285|ref|YP_477047.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 486

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 131/491 (26%), Positives = 228/491 (46%), Gaps = 32/491 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS------ARQSHFIY 62
             L+W R DLR+ D++ L  AC    + +I ++   P Q+ +  +         +  F+ 
Sbjct: 2   TVLLWFRTDLRLLDHQPLTRACQQG-SPLIPLYCLDPRQFGETSLGLRPRTSPFRGQFLL 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +++ L  +G      Q        + + +   +  V  ++ + +    E      
Sbjct: 61  ESLADLRQQLRSRGSDLVIRQGQPE----QVIPTLAQEWGVEAVYAHEEVGTEEKEVAAA 116

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +E+ L+   I  +      L  P  +     Q+ +++T FRK +  +    D   +P   
Sbjct: 117 VERALRSLGIRLQVDWGHTLYHPEDLPFCLSQLPELFTRFRKQVEGSTPIRDPLPIPSIP 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKE--KVYYYVEQ 233
              +G + P  +P        +          +  G   A   L+ +  +  ++  Y E 
Sbjct: 177 PLPSG-LDPGPLPTLASLGLSSPARDPRARFTYTGGSTAAHARLQTYFWDLDRLRIYKET 235

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +S+LS +L++G +SPR  +  +K    + +       +  + EL+WR+++R
Sbjct: 236 RNGMLDPDDSSRLSAWLALGCISPRTVYAEVKRYEQERV--RNESTYWLVFELLWRDYFR 293

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            ++A + +       I     I W +D    QAW +G TG+P++DA MR+L   G+M NR
Sbjct: 294 FILAKHGAKLFRPSGIQGI-PIPWQQDWPRFQAWCRGETGYPLVDANMRELAATGFMSNR 352

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASFL K+L +DWR+G E+F S L+D D+ASN G W + A  GND+   FR F+  
Sbjct: 353 GRQNVASFLTKNLGIDWRMGAEWFESLLIDYDVASNYGNWNYTAGVGNDARG-FRYFHIP 411

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
            Q + +DP+G ++RHWLPEL  +P   IH P+             L ++YP P+VD +K+
Sbjct: 412 KQSREYDPKGDYLRHWLPELAGIPGDKIHEPYRLTAAEQKQFGVRLGVDYPRPLVDLEKS 471

Query: 467 CHHTLNQYYAA 477
                  Y AA
Sbjct: 472 LAANRRVYEAA 482


>gi|291277653|ref|YP_003495244.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia
           amblyommii]
 gi|289657737|gb|ADD14598.1| deoxyribodipyrimidine photo-lyase [Candidatus Rickettsia amblyommii
           AaR/Sc]
          Length = 478

 Score =  358 bits (920), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 154/486 (31%), Positives = 239/486 (49%), Gaps = 32/486 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLL 66
              ++WLR +LR+ DN++  AA  NSD K++ +FI       +      R+  F+  +L 
Sbjct: 3   KTSIIWLRRNLRLHDNRSFAAALRNSD-KILPIFIFDTTILERFKNPHDRRLSFLANTLC 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L +              + IE +       ++  ++ +  YE + + RDK +++ 
Sbjct: 62  LINDELKKLKGKLLVFHG----NPIEIISKLTAILKIENIYADEDYEPSNIARDKTVQEL 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAI 182
           L        + D +L+ P  +L    + YKVYTP+ +A  + +         + L   + 
Sbjct: 118 LGSNCTLNLYCDHLLIKPARVLTKDNKPYKVYTPYMQAFRKFIANNGVIAHNKLLMNYSY 177

Query: 183 RLTGPVTPSNIPRFF--DYPFQAIDPMFPIGE----------QNALHILRKFCKEKVYYY 230
            L G +           D    A + +  IG           +NA +IL KF   ++ +Y
Sbjct: 178 NLEGKLYIPQDIDLKTIDLNVGASEALKQIGYVYKEDELWQPRNAQNILNKFIANRINFY 237

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              RD     GTS +SPYL  G++S R+C+ +     +        G  +W+NELIWREF
Sbjct: 238 KTDRDFLYRNGTSTISPYLRFGLISIRECYRKAFNASL------NPGTVTWINELIWREF 291

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           Y  ++  +P+    +    +  KI WN        +    TG+PIIDAA++QL + GWMH
Sbjct: 292 YATILYHFPNTVNEEFLEKYRNKIPWNNKKEYFNKFINAETGYPIIDAAVKQLISDGWMH 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR RMI ASF  K+LL+DWR GEE+F   L+D +LASN GGWQWA+S G D+ PYFRIFN
Sbjct: 352 NRSRMIVASFFTKNLLLDWRKGEEFFAQYLMDYELASNVGGWQWASSCGTDAQPYFRIFN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P  QG+ FDP   +I+ +LP L    T  IH  + +     +  NYP P+VD+  +    
Sbjct: 412 PYTQGQHFDPDAEYIKKYLPTLKKAQTHIIHNINFY----KMYDNYPKPMVDYVLSRAKA 467

Query: 471 LNQYYA 476
           +  +  
Sbjct: 468 IEVFKQ 473


>gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi]
          Length = 558

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 125/506 (24%), Positives = 205/506 (40%), Gaps = 38/506 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHF 60
                + W R  LRI DN AL  A            +  +F+  P   +   +   +  F
Sbjct: 3   KKETIIHWFRKGLRIHDNPALSLAVDKVRQNPTKYCLRPIFVLDPAIRKWLRVGPNRWRF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  +L+ + ++L          +     + ++       +  V+ L Y    E   V+RD
Sbjct: 63  LQQTLVNLDENLRTINSRLYVVRG----NPVQIFPELFDRWNVSLLTYEHDIEPYAVQRD 118

Query: 121 KLLE-KRLQHRVICKSFDDSVLLPPGSILNHALQ----MYKVYTPFRKALIQNLVQADLR 175
           K +E    +H V         +  P +I+          Y+ Y     A    L     +
Sbjct: 119 KTVEGHAREHNVTTHVEVSHTIFHPETIVKRNGGKPPLTYQKYVSLASACTIPLPLPAPQ 178

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEK 226
            LP   +              +D P            ++  FP GE  AL  + +    K
Sbjct: 179 KLPGKGVEPEKDSQERKDQSCYDPPTMNELDIDEGSLLECKFPGGETEALSRMEQCLSRK 238

Query: 227 VY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +   + +    P      T+ LSPYL  G LS R  ++R++E       K      S +
Sbjct: 239 AWICSFEKPNTSPNSLEPSTTVLSPYLKFGCLSARLFYSRIQETIKGQ--KHSQPPVSLI 296

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +++WREFY  + A  P+            +++W+ +   L AW +G TG+P IDA MRQ
Sbjct: 297 GQMMWREFYYCVAAVTPNFDKM-SGNDVCIQVDWDTNKEYLNAWTEGRTGYPFIDAIMRQ 355

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S    
Sbjct: 356 LRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMW-LSASAF 414

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLN 455
              YFR+++P   GK+ DP+G +I+ ++PEL   P+  I+ P     +        +  +
Sbjct: 415 FHQYFRVYSPVAFGKKTDPEGKYIKKYVPELARFPSGIIYEPWKANLETQKKLGCIIGKD 474

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQS 481
           YP  IV H++     + +  AA +++
Sbjct: 475 YPKRIVVHEEISKTNIQRMSAAYRRN 500


>gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei]
          Length = 591

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 195/494 (39%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L AA   +   V  V+I  P       +   +  F+  SL  + 
Sbjct: 22  SVHWFRKGLRLHDNPSLLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLD 80

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        +       +  VT+L +    E     RD  + K  + 
Sbjct: 81  TSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKE 136

Query: 130 -RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVP 180
             V   + +   L     I++   Q     Y  F+  + +  +           +     
Sbjct: 137 AGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAVTSQQMESCR 196

Query: 181 AIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           A           +P   +  F  + + P  +  GE  AL  L K  + K +    +R   
Sbjct: 197 AEIQDNHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 256

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+  
Sbjct: 257 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 315

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 316 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 374

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A F  + DL V W  G   F   LLD D + N G W W  S       +F  + P 
Sbjct: 375 RHAVACFPTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 433

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      +  + ++YP P+V+H + 
Sbjct: 434 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAARCIIGVDYPRPMVNHAET 493

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 494 SRLNIERMKQIYQQ 507


>gi|171779964|ref|ZP_02920868.1| hypothetical protein STRINF_01751 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281312|gb|EDT46747.1| hypothetical protein STRINF_01751 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 471

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 172/484 (35%), Positives = 240/484 (49%), Gaps = 31/484 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHN--SDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           M   ++W+RND R  DN AL  A ++   +  +I ++   PE  +    S     + ++S
Sbjct: 1   MGNSVLWIRNDFRFHDNTALINAINDIKDNENLIFIYHLDPEIIKIETTS---YAYFFSS 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L    +S  +KG+   +            L+ +     + K++YN         +++ L 
Sbjct: 58  LNSYYESCLKKGLDIYFLYGEILTCFDTLLNEFS---NIDKIYYNTIECGYGKSQEQKLN 114

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-------QNLVQADLRS 176
           + L+   V   SF D  L     +L      YKV+T +    +       QN+  A L  
Sbjct: 115 RFLKRKNVEVFSFYDHHLHSANKVLKEDNSHYKVFTHYYNKWMSSKKPEEQNIDYAKLSE 174

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           + +       P+         +      D     GE+ A   L  F   K+  Y E R+ 
Sbjct: 175 IILSDFSKKDPIGKEKFIELRNL--LNNDFSMFTGEEKARECLADFMNAKLCSYNENREY 232

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P + GTS LS YL+ G LS R+ +N        L      G   ++ EL WR+FY  +  
Sbjct: 233 PFLDGTSHLSHYLTTGQLSVREVFNAATMMPFSL------GQEIFIKELAWRDFYNMIYY 286

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           F+P+    +  I     I W  D      WK G TGFPIIDAAMRQL   GWMHNRLRMI
Sbjct: 287 FHPNQ-HNEEIIEKYRYINWEYDEENFIKWKSGLTGFPIIDAAMRQLREEGWMHNRLRMI 345

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFL+KDLL+DWR+GE+YF   L+D D ASN GGWQWAAS G D+VPYFRIFNP  Q K
Sbjct: 346 TASFLIKDLLIDWRLGEKYFSEMLIDYDTASNIGGWQWAASVGTDAVPYFRIFNPITQSK 405

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAP---HSWLDKN---DLSLNYPLPIVDHKKACHHT 470
           ++DP+G FI+ ++ EL ++PTQYIH P      L++N   D+   Y  PIVDHK      
Sbjct: 406 KYDPEGKFIKRYVKELEDIPTQYIHEPFKFKKQLEENYGIDIKKLYVSPIVDHKTQRQKA 465

Query: 471 LNQY 474
           L  +
Sbjct: 466 LEMF 469


>gi|269794388|ref|YP_003313843.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM
           10542]
 gi|269096573|gb|ACZ21009.1| deoxyribodipyrimidine photo-lyase type I [Sanguibacter keddieii DSM
           10542]
          Length = 450

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 146/476 (30%), Positives = 225/476 (47%), Gaps = 35/476 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASL 65
             + W R DLR+ DN AL +A   + A   +V+ +F+     W      + +  ++ ASL
Sbjct: 2   TTIHWFRRDLRLADNPALNSAWEQAQADGSQVVGLFVLDDRLWG--PSGSPRRDYLLASL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + +S    G      + +      E L +   +     +     +E     RD+ +E 
Sbjct: 60  RALDES---MGGRLVVRRGAP----TEVLPAVAREVGARTVHVAESFEPFGRARDEEVET 112

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L +  V  +    +  + PG +L      Y+V+TPFR A + +              + 
Sbjct: 113 ALAEDDVELRRTGSAYAVSPGRVLTRTGTPYRVFTPFRTAWLDHGWCGP--------AQD 164

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            G V  + +P   D P    +P+ P GE+ AL    +F ++ V  Y + R+ P +  TS+
Sbjct: 165 PGEVDWAELPS-EDLPEADGEPLRPAGEEAALERWHEFLED-VAGYDDDRNRPDLDLTSR 222

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS  L  G + PR           DL      GA S+ +EL WREF+  ++   P     
Sbjct: 223 LSVPLKWGEIHPRTLL-------ADLKNLRDEGAASFRSELAWREFHADVLFHSPEAATL 275

Query: 305 --KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +  +P       ++     +AW +G TG+P++DA MRQL   GWMH R+RM+  SFLV
Sbjct: 276 SIREVMPDDAWTPRSQADRWFEAWTEGRTGYPMVDAGMRQLLAEGWMHGRVRMLVGSFLV 335

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL + W+ G  +FM  LLD D + N   WQW A TG D+ PYFRIFNP  QG +FDP G
Sbjct: 336 KDLHIPWQRGARHFMQHLLDADRSQNQLNWQWVAGTGLDASPYFRIFNPVTQGLKFDPDG 395

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            ++R W+PEL  +P + +H P       +   +YP  +VDH +    +L+ Y   K
Sbjct: 396 EYVRRWVPELRGIPGKAVHEPWKLPTPPE---DYPDQLVDHGRERKESLDAYARFK 448


>gi|221633352|ref|YP_002522577.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
 gi|221156145|gb|ACM05272.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
          Length = 467

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 164/480 (34%), Positives = 246/480 (51%), Gaps = 21/480 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  + W+R DLR+ DN+A  AA      +++ +F+  P        S R++ F++A+L 
Sbjct: 1   MTTVVWWVRRDLRLHDNQA-LAAALTRARELVPLFVLDPALLAGPTSSQRRNAFLFAALR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L ++G               + L +   +   T +           RRD+ + + 
Sbjct: 60  SLDAALRRRGSRLIVRAGRPE----QVLPTVVRESGATLVMAEADGSPYARRRDEAVARS 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               V  +  + S L P GSI     + Y+VY+ FR+A  +  + +    LP P      
Sbjct: 116 ----VPLQLVEGSTLRPLGSIRAPTGEPYRVYSQFRRAWFRLPIPSPQDILPAPPRLPPV 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P   S           A+   F   E  A   L+ F  + +  Y  +R+     G+SQLS
Sbjct: 172 PRLASEPIPESPL---AVPERFAPSEDAARQRLQHFLAQGLASYHLRRNALDGSGSSQLS 228

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY   G+LS R+ W        +      +GA +WL+EL+WREFY+HL+A +P       
Sbjct: 229 PYFRFGLLSVREAWCAAARYLDE--PDAAAGARAWLDELLWREFYQHLLAAWPESARM-S 285

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P    + W   +  L  W++G TGFP++DAAMRQL + GWM NR RMI ASFL K LL
Sbjct: 286 MQPEFRDVAWPGSNDALARWQEGRTGFPVVDAAMRQLVSEGWMSNRARMIVASFLSKLLL 345

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDWR GE +F  +L+DGDLA+N GGWQW+A TG D+ PYFRIFNP +QG++ DP G+++R
Sbjct: 346 VDWREGERFFRRELVDGDLAANVGGWQWSAGTGTDAAPYFRIFNPVLQGEQHDPNGSWVR 405

Query: 427 HWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            WLPEL NVP +Y+ AP              +  +YP PIV+++ A    L  + + ++ 
Sbjct: 406 TWLPELANVPREYLFAPWRMPIEVQLRAGCRIGHDYPAPIVEYESARARALEWFRSVRQA 465


>gi|308080350|ref|NP_001183937.1| cryptochrome 2 [Zea mays]
 gi|257802570|gb|ACV66337.1| cryptochrome 2 [Zea mays]
          Length = 643

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 138/490 (28%), Positives = 226/490 (46%), Gaps = 22/490 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ DN A  AA   +  +V+  ++ +PE+   +        ++  SL  + 
Sbjct: 18  TVVWFRRDLRVEDNPA-LAAAARTAGEVVPAYVWSPEEDGPYYPGRVSRWWLSQSLKHLD 76

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL + G      + S+  D++  L         T LF+NR Y+   + RD  ++++L  
Sbjct: 77  ASLRRLGACRLVTRRSS--DAVVALIDLVRSTGATHLFFNRLYDPLSLVRDHRVKEQLSA 134

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  +SF+  +L  P  +L+     + ++ PF    +     A     P          
Sbjct: 135 EGITVQSFNADLLYEPWEVLDDDGFPFTMFAPFWNRCLCMPDPAAPLLPPKRINSGDLSR 194

Query: 189 TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P +   F D   +  + +    +  G QNA   L  F    +  Y           TS 
Sbjct: 195 CPWDELIFEDESEKGSNALLARAWSPGWQNADKALTAFLDGPLVDYSANHKKADSASTSL 254

Query: 245 LSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           LSPYL  G LS R+ +++++ +      D     +     +L  +  RE+ R+L   +P 
Sbjct: 255 LSPYLHFGELSVRKVFHQVRMKQLMWSNDGDRAGEESCTLFLRAIGLREYSRYLTFNHP- 313

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R++ +SF
Sbjct: 314 CSLEKPLLSHLRFFPWVVDEVHFKVWRQGRTGYPLVDAGMRELWATGWVHDRIRVVVSSF 373

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP
Sbjct: 374 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDP 433

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHH---TL 471
            G ++R WLPEL  +PT++IH P    +        +L  NYP PIV+   A       L
Sbjct: 434 HGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVELDAANSRLQGAL 493

Query: 472 NQYYAAKKQS 481
           ++ +  +  S
Sbjct: 494 SEMWELEAAS 503


>gi|157412647|ref|YP_001483513.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
 gi|157387222|gb|ABV49927.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9215]
          Length = 478

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 167/485 (34%), Positives = 240/485 (49%), Gaps = 31/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69
           L W R DLRI DN+AL  A   S+A + + +I        H  +A  ++ F+  SL ++ 
Sbjct: 7   LFWYRKDLRIFDNQALNKAISLSNA-ITSTYIFDENY--SHDFNANSRAWFLANSLQELG 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            + ++ G      +     D I  +           +F+N+  E  E+ RD  ++K L+ 
Sbjct: 64  NNWNKMGSRLVIEKG----DPILIIPQLAKLIDAKFVFWNKSIEPYEINRDLKIKKNLKE 119

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV--------------QADL 174
           + I      D +L+ P  I +   + Y VY PF K L   +               +   
Sbjct: 120 KNIQFIESWDHLLVEPSKIFSGNNKPYSVYGPFYKNLKSKMKFLGSYNQYKVIFQFKDID 179

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQ 233
             L    I  +     +   +   +P   I P  P GE  A  +L+ F  EK +Y Y   
Sbjct: 180 NKLKENKIINSSDSVLNKFLKNIKFPGSNICPCRP-GEVAAESLLKNFINEKKIYSYNSV 238

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYR 292
           RD+P+  GTS LS  L  G +S R+ WN       D      S    +W  EL+WREFY+
Sbjct: 239 RDLPSHIGTSFLSASLRFGTISIRKVWNATLNLNSDFESHENSLSIETWQKELVWREFYQ 298

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H +  +P +  G P+    ++  W  ++   Q W +G TG PI+DAAMRQLN+ GWMHNR
Sbjct: 299 HCLFHFPELEKG-PYRKKWDQFPWLNNNEWFQHWSKGETGVPIVDAAMRQLNSTGWMHNR 357

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            RMI ASFLVKDL+ +W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP 
Sbjct: 358 CRMIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPY 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            Q K+FDP   +I+ W+PEL+ V    I        +N+   NY  PIV+H        +
Sbjct: 417 TQAKKFDPICEYIKSWIPELSKVSNSDILNGEISNLENN---NYSKPIVNHNIQQRLFKS 473

Query: 473 QYYAA 477
            Y   
Sbjct: 474 LYAEI 478


>gi|309811658|ref|ZP_07705437.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
           Ellin185]
 gi|308434459|gb|EFP58312.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
           Ellin185]
          Length = 463

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 145/498 (29%), Positives = 222/498 (44%), Gaps = 64/498 (12%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNS----------------DAKVIAVFIATPEQWRQHG 52
             LVW R+DLR  D+ AL AA  ++                 A V+A+F+   E      
Sbjct: 2   TSLVWFRDDLRTFDHPALRAAVDHAVTSQGSQESDDGASSEPAGVVALFVLDEESDGLRP 61

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +      +++ SL+ ++  L   GI     + +  D  ++ ++++     V  + +NR+Y
Sbjct: 62  LGGAVKWWLHHSLVALRAKLEALGIPLVLRRGAAHDVVLDVVETF----DVDFVGWNRRY 117

Query: 113 EINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
              E   D  ++     R V   S+  ++L  P +I       Y+V+TPF KA +     
Sbjct: 118 GGPERVVDAGIKAAFAERDVEVHSYAANLLFEPWTITTGGGTPYRVFTPFWKACLSEPQP 177

Query: 172 ADL-----RSLPVPAIRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRK 221
            +         P  A+         ++  +   P +      I   +  GE  A  +L  
Sbjct: 178 REPLDAPSALTPPSALVEQAGQASDDLDTWALLPTKPDWSTGIAKAWTPGEDAAHELLAD 237

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           F  + V +Y  QRD P+   TS+LSP+L  G +SP+  W+  +    D+         ++
Sbjct: 238 FLDDAVVHYATQRDEPSKPATSRLSPHLRFGEISPQTIWHAARRSGKDV--------ETF 289

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAM 340
           L+E+ WREF  H +   P +          +   W   D   L AW++G TG P++DA M
Sbjct: 290 LSEVGWREFAWHTLYDNPDL-HEVNLNRKFDAFPWPPLDEDALLAWEKGETGVPLVDAGM 348

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   G MHNR+RM+ ASFL K+LL+DWRIGEE+F   L+D D ASN   WQW A  G 
Sbjct: 349 RELWETGTMHNRVRMVVASFLTKNLLIDWRIGEEWFWDTLVDADAASNPFNWQWVAGCGA 408

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D+ PYFR+FNP  Q K+FDP   ++R W  +                           PI
Sbjct: 409 DAAPYFRVFNPETQRKKFDPDERYVRRWGADDGR-----------------------EPI 445

Query: 461 VDHKKACHHTLNQYYAAK 478
           VD  +     L  Y   K
Sbjct: 446 VDLAETRKAALAAYEHTK 463


>gi|28279917|gb|AAH44204.1| Cry5 protein [Danio rerio]
          Length = 545

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 132/502 (26%), Positives = 202/502 (40%), Gaps = 32/502 (6%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           KATT     + W R  LR+ DN AL AA  +    +  +F+  P   +   I   +  F+
Sbjct: 23  KATTMSHNTIHWFRKGLRLHDNPALIAALKDC-RHIYPLFLLDPWFPKNTRIGINRWRFL 81

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SL +        + S      E L     Q ++T+L +    E     RDK
Sbjct: 82  IEALKDLDSSLKKLNSRLFVVRGSP----TEVLPKLFKQWKITRLTFEVDTEPYSQSRDK 137

Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLP- 178
            + K  +   V         L     I++ +  +    Y   +  +            P 
Sbjct: 138 EVMKLAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAPT 197

Query: 179 ------VPAIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVY- 228
                 V             IP   D           +FP GEQ AL  L +  +   + 
Sbjct: 198 NEDMRGVSTPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHMERTNWV 257

Query: 229 -YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
             + + +  P   I  T+ LSPY+  G LS R  W RL + +            S   +L
Sbjct: 258 CKFEKPKTSPNSLIPSTTVLSPYVRFGCLSARIFWWRLADVYRGKT--HSDPPVSLHGQL 315

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREF+       P+    +       +++W+ +   L AW++  TGFP IDA M QL  
Sbjct: 316 LWREFFYTTAVGIPNFNKMEG-NSACVQVDWDNNPEHLAAWREARTGFPFIDAIMTQLRQ 374

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G++ F   LLD D + N G WQW  S       
Sbjct: 375 EGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQW-LSASTFFHQ 433

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458
           YFR+++P   GK+ D  G +I+ +LP L   PT+YI+ P              +  +YP 
Sbjct: 434 YFRVYSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVGKDYPR 493

Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480
           PIVDH+      + +  AA  +
Sbjct: 494 PIVDHEVVHKKNILRMKAAYAK 515


>gi|84495534|ref|ZP_00994653.1| Phr [Janibacter sp. HTCC2649]
 gi|84385027|gb|EAQ00907.1| Phr [Janibacter sp. HTCC2649]
          Length = 455

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 154/471 (32%), Positives = 233/471 (49%), Gaps = 20/471 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++WLR DLR  D+ AL AA   +  +++  ++  P  W   G  A +  ++ A+L   
Sbjct: 2   TSVLWLRRDLRRADHPALLAARDAAGGELVVAYVIDPALWA--GAGAVRRAWLAAALEAT 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++       +        + D  E + +   +   T +   R+      RRD+ +   L 
Sbjct: 60  REEFDDGLTLL-------WGDPREVVPALAKRVGATSVHVTRETTPFGRRRDETVASSLA 112

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            + I          + PG + N +   YKV+TPF KA   +             +R    
Sbjct: 113 AQGIEWVETGTPYAVGPGLVQNLSGAPYKVFTPFAKAWRGHGWPDPAPRPSELPLRHVRN 172

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              +            +  +   GE+ A+   R+FC+  +  Y   RD+PA  GTS+LSP
Sbjct: 173 DAKATQAIEEALAAPDLPDLPAAGERAAMARWREFCETGLTAYATDRDLPATDGTSRLSP 232

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL +GV+ PR           DL  +   GA +++NEL WREFY  ++   PS    K  
Sbjct: 233 YLKLGVVHPRTLL-------ADLAGRRGEGAQTYINELGWREFYADVLWHNPSSAW-KDL 284

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 + +++ +  ++AW+ G TG+PI+DA MRQL   GWMHNR+RMITASFL KDL V
Sbjct: 285 RDPLAGMAYDEPADAIEAWQTGTTGYPIVDAGMRQLLAQGWMHNRVRMITASFLTKDLHV 344

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W +G  +F+  L+DGD+ASNN GWQW A TG D+ PYFR+FNP  QG++FD  G ++R 
Sbjct: 345 WWPVGARHFLELLIDGDIASNNHGWQWVAGTGTDASPYFRVFNPVTQGEKFDVDGDYVRE 404

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           W+PEL ++  +  H P  W   +  +  YP  IVDH +     L +    K
Sbjct: 405 WVPELAHLAGKAAHQP--WEHPDGYAHGYPQRIVDHAEERREALRRLGELK 453


>gi|226308066|ref|YP_002768026.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis PR4]
 gi|226187183|dbj|BAH35287.1| deoxyribodipyrimidine photo-lyase [Rhodococcus erythropolis PR4]
          Length = 444

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 143/470 (30%), Positives = 223/470 (47%), Gaps = 31/470 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           VW R DLR+ D   L AA  ++  + + +F+            + +   ++A+L  +   
Sbjct: 2   VWFRRDLRVGDLPILSAAS-DAGGRTLGLFVLDENLLG--PAGSPRQDQLFANLTALDHQ 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L  K +V +        D  + +          ++  +  Y     RRD  +      +V
Sbjct: 59  LDGKLMVVR-------GDPADVVPRVAESVGAEEVHISADYGPYGRRRDAAVA----EQV 107

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
              +      + PG +       YKV+TP+ +  +++  +    S     +R   P    
Sbjct: 108 ELIATGSPYAVAPGRVTKADGDPYKVFTPYFRQWMEHGWRGPA-STDAQTVRWFDPSDKE 166

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
             PR    P  +      +GE  AL   +++C+  +  Y ++R+ P +  TS++S  L  
Sbjct: 167 GGPRRVSIPAPSASVSDFVGEVGALEQWKEYCENDLDRYDDERNRPDLDTTSRMSIPLKY 226

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G + PR           DL  +   GA ++  +L WR+FY  ++   P     K +    
Sbjct: 227 GTIHPRTML-------ADLSKRLGDGAQAYRRQLAWRDFYADILFQRPDSAR-KNYDDKF 278

Query: 312 EKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           +++  +          AW +G TGFPI+DA MRQL    WMHNR+RMI ASFLVKDL + 
Sbjct: 279 DRLRHDGGVDADAAFTAWCEGKTGFPIVDAGMRQLAAENWMHNRVRMIVASFLVKDLHIP 338

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W  G  +FMS L+DGDLASN  GWQW A +G D+ P+FR+FNP  QG++FDP GT++R W
Sbjct: 339 WWRGARFFMSHLVDGDLASNQHGWQWTAGSGTDASPFFRVFNPITQGEKFDPDGTYVRRW 398

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +PEL +VP + +H       K    ++YP PIVDH       L +Y   K
Sbjct: 399 VPELRDVPGKAVH-----SLKAMRPVDYPDPIVDHAHEREEALRRYGEIK 443


>gi|254462705|ref|ZP_05076121.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2083]
 gi|206679294|gb|EDZ43781.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 473

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 159/484 (32%), Positives = 233/484 (48%), Gaps = 29/484 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T     +VW R DLR++D+ AL AAC ++   VIAVFI         G+ A     +  +
Sbjct: 2   TKEKPIIVWFRRDLRVSDHPALSAAC-SARVPVIAVFIKDDIV---DGLGAAPKWRLGKA 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L    ++L++  I     +    D     LD+   +     ++++R Y+   V RD +++
Sbjct: 58  LEVFTQTLARLNIPLILREGPAGD----VLDALITETDAQGVYWSRLYDPACVTRDTVIK 113

Query: 125 K-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL----PV 179
              L   +  +SF   ++  P ++      MYKVYTPF +++    V   L       P 
Sbjct: 114 ADLLSKGLEARSFGGHLMFEPWTVETKTGGMYKVYTPFWRSVKDRDVDVPLAVPTSVQPY 173

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +   +   +          +     +GE  A   L  F +  V  YVE+RDIP+ 
Sbjct: 174 EGHLESADQSDWALGAAMRRGGVIVARHAQVGEAAAQARLADFIENDVSDYVERRDIPST 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GTS LS  L++G +SP QCW+         L + K  +  +L EL+WREF  HL    P
Sbjct: 234 RGTSGLSENLALGEISPHQCWHAGMR----ALHEGKDDSEVFLKELVWREFAYHLTHHTP 289

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            +     +    +K  WN+D+   +   WKQG TG   +DAAMR++   G MHNR RMI 
Sbjct: 290 HILDSN-WKSDWDKFAWNEDADHPEVIAWKQGRTGIEFVDAAMREMYVTGKMHNRGRMIV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+L K LL  W++G+ +F   L D D ASN  GWQWAA +G D+ PYFR+FNP  Q  +
Sbjct: 349 ASYLTKHLLTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDASPYFRVFNPVTQLDK 408

Query: 418 FDPQGTFIRHWLPELNNVPTQ----YIHA-PHSW-LDKNDLSLNYPLPIVDHKKACHHTL 471
           FD +  + R W+ E    P      Y  A P SW L   D+   YP PIV+  K     L
Sbjct: 409 FDRERGYARAWIAEGQGNPPDTATSYFEAIPKSWGLRSTDI---YPKPIVEAAKGRQRAL 465

Query: 472 NQYY 475
           + Y 
Sbjct: 466 DAYQ 469


>gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2050

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 131/479 (27%), Positives = 196/479 (40%), Gaps = 33/479 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA  +   ++  VFI  P       +   +  F+  +L  + 
Sbjct: 5   SIHWFRKGLRLHDNPALMAALRDCK-ELYPVFILDPH-LHNKSVGINRCRFLIGALRDLD 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL          +        E       Q +VTKL Y    E   + RD+ +    + 
Sbjct: 63  LSLRNLNSRLFVVRGKPE----EVFPKLFSQWKVTKLTYEYDTEPYSLSRDRTVTTLAEE 118

Query: 130 RVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLP-------VP 180
             +   +     L     +L  +  +    Y   +  + +        S P       V 
Sbjct: 119 SGVQVVYRVSHTLYDTERVLEENNGKPPLTYNSMQAIVKKLGPPKRPISAPSMDDLKGVS 178

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235
              L        IP   D         +  FP GEQ AL  L    K+  +   + + + 
Sbjct: 179 TPCLEDHEKKYGIPTLEDLGHDPAGLPEEKFPGGEQEALRRLEDQMKKTSWVCNFEKPQT 238

Query: 236 IPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P      T+ LSPY++ G LS R  W RL + +     K  +   S   +L+WREF+  
Sbjct: 239 SPNSLSPSTTVLSPYVTFGCLSARTFWWRLSDVYSGK--KHSAPPVSLHGQLLWREFFYT 296

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+        P   +++W+ DS  L AW++  TGFP IDA M QL   GW+H+  
Sbjct: 297 ASVGIPNFNKMAD-NPVCTQVDWDTDSEYLAAWREARTGFPFIDAIMTQLRQEGWIHHLA 355

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G++ F   LLDGD A N G WQW  S       +FR+++P 
Sbjct: 356 RHAVACFLTRGDLWISWEEGQKVFEELLLDGDWALNAGNWQW-LSASAFFHQFFRVYSPV 414

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKK 465
             GK+ D  G +I+ +LP L   P QYI+ P              +  +YP PIV H++
Sbjct: 415 AFGKKTDKNGDYIKKYLPHLKKFPAQYIYEPWKAPQSIQKAAGCIIGKDYPHPIVKHEE 473


>gi|149184696|ref|ZP_01863014.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21]
 gi|148832016|gb|EDL50449.1| hypothetical protein ED21_28298 [Erythrobacter sp. SD-21]
          Length = 464

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 148/485 (30%), Positives = 235/485 (48%), Gaps = 38/485 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VWLR DLR+ D  AL+AA       VI V++   E+   H        +++ SL  
Sbjct: 3   SPQIVWLRRDLRVADQPALHAAAQAG--PVIPVYVLDDERAGDHAYGGASKVWLHYSLES 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + KS   +       +     D+ + L     +     +   R YE      +  L   L
Sbjct: 61  LCKSFGNRRSQIVLRKG----DAPQVLAGIADEVGAGCIHAIRHYEPWWKEAEDELRDAL 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +       +D + LLPPGS+   +   YK+YTPF K++++ +   D+   P     ++ P
Sbjct: 117 EEDRKLCLYDGNYLLPPGSVTTGSGDPYKIYTPFSKSMLEVMPPRDVLGEPET---ISSP 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPAI 239
                     D+      P +  G        E  A   L  +  ++V  Y E R++P+ 
Sbjct: 174 DNWPESDALEDWELLPSKPDWAGGIRDFWDFGEDAAHERLE-WWADEVADYDEGRNLPSN 232

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LSP+L  G +SP Q W+ LK+       K   G  ++  E+IWR++ ++++  +P
Sbjct: 233 DITSRLSPHLHWGEISPAQVWHALKD-------KRSDGWKTFAKEIIWRDYAQNVIDQFP 285

Query: 300 SVCMGKPFIPWTEKIEWNKD------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +    + +  + E+  W            L+ W++G TG+PI+DA MRQL   GW+HNR+
Sbjct: 286 NYPR-ESYRDYDERTLWRNPNAGHLIEEDLECWQRGMTGYPIVDAGMRQLWQTGWIHNRV 344

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFLVK LL+DWR GE+++   L+D D  +N   WQW + TG DS  + RI  P  
Sbjct: 345 RMICASFLVKHLLIDWRHGEQWYWDCLVDADYGNNGVNWQWISGTGVDSNMFSRIMAPLS 404

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q ++FD    +IR ++PEL  +    IH P      +D   +YP+ ++ HK+A    L  
Sbjct: 405 QSEKFDA-AAYIREYVPELAELDDDCIHDP-----SDDRRGDYPVKVIGHKEARERALEA 458

Query: 474 YYAAK 478
           Y A+K
Sbjct: 459 YRASK 463


>gi|225442831|ref|XP_002285327.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 141/508 (27%), Positives = 213/508 (41%), Gaps = 41/508 (8%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISAR 56
           + S  L+W R  LRI DN AL  A   S+  V  VF+  P                    
Sbjct: 3   SGSSSLMWFRKGLRIHDNPALQHAAKESNC-VYPVFVIDPYFMEPDPNAFSPGSSRAGLN 61

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F+  SL+ +  SL Q G      +    +  I  L     +  V +L +    +   
Sbjct: 62  RIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCL----KEWEVKRLCFEYDTDPYY 117

Query: 117 VRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
              D  ++       +   S     L     I+        +       L      A   
Sbjct: 118 QALDIKVKNYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFLKLAGQPSWASSP 177

Query: 176 SL----PVPAIRLTGPVTPSNIPRFFDYPFQAI----DPMFPIGEQNALHILRKFCKEKV 227
            L     +P +   G    SN+P   +  ++ I       F  GE  AL  LR+  ++K 
Sbjct: 178 LLTTLSWLPPVGDVGTCEISNVPTVKELGYEEIGQDESTPFKGGESEALKRLRESIRDKE 237

Query: 228 Y--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +   + + +  P+      T+ LSPYL  G LS R  +  L + + ++     S   S +
Sbjct: 238 WVANFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNMKW-HTSPPVSLV 296

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +L+WR+F+  +    P+    K      ++I WN D  LL AW++  TG+P IDA M Q
Sbjct: 297 GQLLWRDFFYTVGFGTPNFDRMKGNR-ICKQIPWNDDDELLAAWREARTGYPWIDAIMVQ 355

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GWMH+  R   A FL + DL V W  G + F   L+D D A NNG W W  S  + 
Sbjct: 356 LRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLW-LSCSSF 414

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455
              Y RI++P   GK++DP G +IRH+LP L ++P +YI+ P +         K  +  +
Sbjct: 415 FYQYNRIYSPISFGKKYDPNGNYIRHFLPILKDMPKEYIYEPWTAPPSIQAKAKCIIGKD 474

Query: 456 YPLPIVDHKKA---CHHTLNQYYAAKKQ 480
           YP P+V H  A   C   L + YA  K+
Sbjct: 475 YPKPVVCHDSAIKECKRKLAEAYALNKR 502


>gi|124025078|ref|YP_001014194.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A]
 gi|123960146|gb|ABM74929.1| putative DNA photolyase [Prochlorococcus marinus str. NATL1A]
          Length = 504

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 163/498 (32%), Positives = 242/498 (48%), Gaps = 39/498 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQV 68
            + W R DLR  DN  L+ A  NS + +I V++  P         S  ++ F+  SLL++
Sbjct: 17  SIFWHRRDLRFGDNIGLFEASKNSKS-LIGVYVLDPNLLDLNRTTSEAKNWFLGESLLEL 75

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           QK+   +G +          D IE +           +++N   E  E+ RDK + ++L 
Sbjct: 76  QKNWEIRGSLLLILNG----DPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEKLS 131

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------------------- 168
           + +    +F D +++ P  I  +  + YKVY PF +  I                     
Sbjct: 132 KEKRKVYTFLDQLIVNPSDIKTNNDEPYKVYGPFYRKWIDIINRTKSSDNNLIQTSETAK 191

Query: 169 ----LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKF 222
               L + +L S+    +         +I         +   + P   GE  ++  L  F
Sbjct: 192 KLTGLNERELSSIKNSDLNYCITKKSKSIYELLSSNRFSNTSLCPCKPGESESIKQLNSF 251

Query: 223 CKEK-VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFS 280
                +  Y + RDIP+++ TS LS  LS+G +S R  WN  +        + K +   +
Sbjct: 252 IHSGVINSYNQARDIPSLENTSNLSAALSLGTISCRAVWNGAQVSKSSTHDEYKINSIDT 311

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           W+ EL WREFY++ +  +P +  G P+        W       +AW  G TG PIIDAAM
Sbjct: 312 WIKELAWREFYQNALINFPELEKG-PYREKWLNFPWQNRPDWFEAWGDGLTGIPIIDAAM 370

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQL   GWMHNR RMI ASFLVKDLL+DWR+GE +FM  L+DGDLA+NNGGWQW+AS+G 
Sbjct: 371 RQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMKSLVDGDLAANNGGWQWSASSGM 430

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D  P  RIFNP  Q  +FD  G +IR W+PEL+++ T  + +      + +   +YP PI
Sbjct: 431 DPKPM-RIFNPFRQASKFDEDGEYIRKWIPELSHISTPNLLSGEISSAERN---SYPNPI 486

Query: 461 VDHKKACHHTLNQYYAAK 478
           ++HK         Y   K
Sbjct: 487 INHKNQTSIFKELYSNIK 504


>gi|183986194|gb|AAI66277.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
          Length = 531

 Score =  357 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 127/494 (25%), Positives = 204/494 (41%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA  +  A++  +FI  P   R   +S  +  F+  +L  + 
Sbjct: 5   SIHWFRKGLRLHDNPALLAAMKDC-AELYPIFILDPWFPRNMKVSVNRWRFLIEALKDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQ 128
           ++L +        +        E       + +VT+L +    E    +RD  +EK   +
Sbjct: 64  ENLKKINSRLFVVRGKP----TEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKLAAE 119

Query: 129 HRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLP-------VP 180
           H V       + L     I+  +  +    Y  F+  L           +P         
Sbjct: 120 HNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRPVQVPTQENMKDCC 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235
            +  +       +P   +    ++     ++P GE  AL  L    K   +   + +   
Sbjct: 180 TLWKSSYNEKYGVPTLEELGQDSLKLGPRLYPGGESEALSRLELHMKRTTWVCNFKKPET 239

Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P      T+ LSPY+  G LS R  W R+ E +     K      S   +L+WREF+  
Sbjct: 240 EPNSLTPSTTVLSPYVKFGCLSARTFWWRIAEIYQGK--KHSDPPVSLHGQLLWREFFYT 297

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+    +       +++W  +   LQAW +G TG+P IDA M QL T GW+H+  
Sbjct: 298 AGVGIPNFNKMEG-NTVCVQVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLRTEGWIHHLA 356

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G++ F   LLD D + N G WQW  S       +FR+++P 
Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQW-LSASTFFHQFFRVYSPV 415

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
             GK+ D  G +I+ +LP L   P +YI+ P              +  +YP PIV+H  A
Sbjct: 416 AFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYPKPIVEHDVA 475

Query: 467 CHHTLNQYYAAKKQ 480
               + +  AA  +
Sbjct: 476 SKQNIQRMKAAYAR 489


>gi|187608706|ref|NP_001120012.1| hypothetical protein LOC100144974 [Xenopus (Silurana) tropicalis]
 gi|165970470|gb|AAI58310.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
          Length = 531

 Score =  357 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 128/494 (25%), Positives = 206/494 (41%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA ++  A++  +FI  P   R   +S  +  F+  +L  + 
Sbjct: 5   SIHWFRKGLRLHDNPALLAAMNDC-AELYPIFILDPWFPRNMKVSVNRWRFLIEALKDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQ 128
           ++L +        +        E       + +VT+L +    E    +RD  +EK   +
Sbjct: 64  ENLKKINSRLFVVRGKP----TEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKLAAE 119

Query: 129 HRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLP-------VP 180
           H V       + L     I+  +  +    Y  F+  L           +P         
Sbjct: 120 HNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLASLGPPKRPVQVPTQENMKDCC 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235
            +  +       +P   +    ++     ++P GE  AL  L    K   +   + +   
Sbjct: 180 TLWKSSYNEKYGVPTLEELGQDSLKLGPRLYPGGESEALSRLELHMKRTTWVCNFKKPET 239

Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P      T+ LSPY+  G LS R  W R+ E +     K      S   +L+WREF+  
Sbjct: 240 EPNSLTPSTTVLSPYVKFGCLSARTFWWRIAEIYQGK--KHSDPPVSLHGQLLWREFFYT 297

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+    +  I    +++W  +   LQAW +G TG+P IDA M QL T GW+H+  
Sbjct: 298 AGVGIPNFNKMEGNIVCV-QVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLRTEGWIHHLA 356

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G++ F   LLD D + N G WQW  S       +FR+++P 
Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQW-LSASTFFHQFFRVYSPV 415

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
             GK+ D  G +I+ +LP L   P +YI+ P              +  +YP PIV+H  A
Sbjct: 416 AFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYPKPIVEHDVA 475

Query: 467 CHHTLNQYYAAKKQ 480
               + +  AA  +
Sbjct: 476 SKQNIQRMKAAYAR 489


>gi|190407676|gb|EDV10943.1| photolyase [Saccharomyces cerevisiae RM11-1a]
          Length = 565

 Score =  357 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 161/504 (31%), Positives = 250/504 (49%), Gaps = 46/504 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQS 58
           +S  + W RNDLR+ DN  LY +          N+ AK+ AV++   + WR H  S  + 
Sbjct: 74  VSTVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKL 133

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQR---VTKLFY 108
            FI  +L  +Q+SL++  I     +        SN  + +E+    C+       T +  
Sbjct: 134 MFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITA 193

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           N +Y+ +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K  +  
Sbjct: 194 NIEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVTPGLITTDRGTNYSVFTPWYKKWVLY 253

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALH 217
           +      +  +  + +  P+  +       + +   D               + E+ AL 
Sbjct: 254 VNNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALS 313

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE----EFVDLLIK 273
            L+ F   K   Y  ++D+  + GTS LS Y++ G +S R   N+  +    + +   +K
Sbjct: 314 RLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALK 373

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
             S   +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  G TG 
Sbjct: 374 DNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGI 433

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           PI+DA MR+L   G+++NR RMITASFL K+LL+DWR GE +FM  L+DGD +SN GGW 
Sbjct: 434 PIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGGWG 493

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453
           + +STG D+ PYFR+FN  IQ K++DPQ  F++ W+PEL                +N   
Sbjct: 494 FCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL-------------ISSENKRP 540

Query: 454 LNYPLPIVDHKKACHHTLNQYYAA 477
            NYP P+VD K +    L  Y  A
Sbjct: 541 ENYPKPLVDLKHSRERALKVYKDA 564


>gi|118472574|ref|YP_886913.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
           155]
 gi|118173861|gb|ABK74757.1| deoxyribodipyrimidine photo-lyase [Mycobacterium smegmatis str. MC2
           155]
          Length = 452

 Score =  357 bits (915), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 152/472 (32%), Positives = 225/472 (47%), Gaps = 31/472 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+W R DLR  D+ A+  A    DA V+A ++  P          R+  ++Y +L  +
Sbjct: 2   PTLLWFRRDLRCADHPAVLDAAQ-GDADVLACYVLDPRLTGS--SGDRRLAYLYGALRDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L  K +V +           + +           +  +  +    +RRD+ +   L 
Sbjct: 59  REQLGGKLLVTRGRPE-------QRIPELAAAIGAASVHVSGDFSPFGLRRDEAVRAALA 111

Query: 129 H---RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                V   +     L+ PG I       Y+V+TPF +A   +  +A   S P  A    
Sbjct: 112 DLPGDVGLYATGSPYLVTPGRITKDDGNPYRVFTPFFRAWRDHGWRAPADSGPGSARW-- 169

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             + PS +P   + P    D   P GE  A    R F +E +  Y   R+ P +  TS++
Sbjct: 170 --IDPSEVPGGAEIPEPPTDLELPAGETAARAQWRAFVRESLRDYSSNRNRPDLDATSRM 227

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G + PR     L+            GA ++L EL +R+FY  ++  +P      
Sbjct: 228 SAHLKFGTIHPRTMAADLE------RDGAGDGAAAYLRELAFRDFYAAVLHHWPDSAWWN 281

Query: 306 PFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                 + IE ++      L  AWK G TGFPI+DA MRQL   G++HNR+RMI ASFLV
Sbjct: 282 WNRT-FDAIETDEGPDAQRLFDAWKAGMTGFPIVDAGMRQLAATGFVHNRVRMIVASFLV 340

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL + W+ G  +F+ QL+DGD+A+N  GWQW A  G D+ PYFR+FNPT QG++FDP G
Sbjct: 341 KDLHLPWQWGARWFLDQLVDGDIANNQHGWQWTAGCGTDAAPYFRVFNPTKQGEKFDPDG 400

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
            +IR W+PEL +  T     P           +YP PIVDH +     L +Y
Sbjct: 401 VYIRRWVPELADPAT----VPDVHRIDGSRPADYPEPIVDHAQERAEALRRY 448


>gi|56696791|ref|YP_167152.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
 gi|56678528|gb|AAV95194.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
          Length = 481

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 159/479 (33%), Positives = 226/479 (47%), Gaps = 27/479 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + WLR DLR+ D+  L AA   S   V+ VFI            A +       L +   
Sbjct: 8   IYWLRRDLRLADHPGLAAAAA-SGRPVVPVFIHDESVAALGAAPAFRLGLG---LERFGA 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      + S    +   L +   +     +++ R+Y    + RD  L+  LQ  
Sbjct: 64  TLGDMGSRLILRRGS----APAVLQALIAETGAGAVWWTREYTPQAITRDSALKTALQQA 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----LVQADLRSLPVPAIRLT 185
            I  +SF  ++L  P ++   A   YKVYTPF +A+ Q        A  R  P  A   +
Sbjct: 120 GIEARSFGGALLFEPWTVETGAGGFYKVYTPFWRAVSQREVSAPDPAPARVRPPEAWPGS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             ++   +          +      GE  AL  L +F    +  Y   RD+PA  GTS L
Sbjct: 180 EALSDWGLGAPMRRGAAVVATHQAPGEAAALERLDRFIATGIGQYDACRDLPAGDGTSTL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  LS+G + PR  W+R  E       K   GA ++L +L+WR+F  HLM   P + + +
Sbjct: 240 SDALSLGEIGPRTLWHRAGE----AAHKGAQGAETFLKQLVWRDFAYHLMYHTPHL-LSE 294

Query: 306 PFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + P  E   W  D       AW +G TG P++DAAMR++   G MHNR RMI AS+L K
Sbjct: 295 NWRPGWEVFPWATDPADPGFVAWTRGRTGVPLVDAAMREMYVTGRMHNRARMIAASYLTK 354

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L+V W++G ++F   L D D A+N  GWQW A  G D+ PYFRIFNP  Q K+FDP+G 
Sbjct: 355 HLMVHWKLGMDWFADCLTDWDPAANAMGWQWVAGCGPDAAPYFRIFNPETQAKKFDPKGR 414

Query: 424 FIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +  HW+ E    P +    Y  A P SW  + D S  YP PI+   +     L+ Y +A
Sbjct: 415 YRNHWIAEGQAEPPRAALSYFDAVPRSWNLRPDAS--YPPPIMALDQGRRRALSAYASA 471


>gi|6324962|ref|NP_015031.1| Phr1p [Saccharomyces cerevisiae S288c]
 gi|130158|sp|P05066|PHR_YEAST RecName: Full=Deoxyribodipyrimidine photo-lyase, mitochondrial;
           AltName: Full=DNA photolyase; AltName:
           Full=Photoreactivating enzyme; Flags: Precursor
 gi|4176|emb|CAA26944.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|1420831|emb|CAA99718.1| PHR1 [Saccharomyces cerevisiae]
 gi|151945461|gb|EDN63704.1| photolyase [Saccharomyces cerevisiae YJM789]
 gi|207340799|gb|EDZ69038.1| YOR386Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269949|gb|EEU05204.1| Phr1p [Saccharomyces cerevisiae JAY291]
 gi|259149859|emb|CAY86663.1| Phr1p [Saccharomyces cerevisiae EC1118]
 gi|285815252|tpg|DAA11145.1| TPA: Phr1p [Saccharomyces cerevisiae S288c]
 gi|323346400|gb|EGA80689.1| Phr1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 565

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 161/504 (31%), Positives = 250/504 (49%), Gaps = 46/504 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQS 58
           +S  + W RNDLR+ DN  LY +          N+ AK+ AV++   + WR H  S  + 
Sbjct: 74  VSTVMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKL 133

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQR---VTKLFY 108
            FI  +L  +Q+SL++  I     +        SN  + +E+    C+       T +  
Sbjct: 134 MFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITA 193

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           N +Y+ +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K  +  
Sbjct: 194 NIEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLY 253

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALH 217
           +      +  +  + +  P+  +       + +   D               + E+ AL 
Sbjct: 254 VNNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALS 313

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE----EFVDLLIK 273
            L+ F   K   Y  ++D+  + GTS LS Y++ G +S R   N+  +    + +   +K
Sbjct: 314 RLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALK 373

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
             S   +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  G TG 
Sbjct: 374 DNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGI 433

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           PI+DA MR+L   G+++NR RMITASFL K+LL+DWR GE +FM  L+DGD +SN GGW 
Sbjct: 434 PIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGGWG 493

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453
           + +STG D+ PYFR+FN  IQ K++DPQ  F++ W+PEL                +N   
Sbjct: 494 FCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL-------------ISSENKRP 540

Query: 454 LNYPLPIVDHKKACHHTLNQYYAA 477
            NYP P+VD K +    L  Y  A
Sbjct: 541 ENYPKPLVDLKHSRERALKVYKDA 564


>gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421]
 gi|81834455|sp|Q7NMD1|CRYD_GLOVI RecName: Full=Cryptochrome DASH
 gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421]
          Length = 500

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 132/493 (26%), Positives = 232/493 (47%), Gaps = 31/493 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHF 60
           +    LVW RNDLR+ D++ L +A H  +A+V+A++   P Q+ +           ++ F
Sbjct: 2   STKTVLVWYRNDLRVHDHEPLTSALHK-NARVVALYCFDPRQFGKAPFGFEKTGPFRARF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  S+  +++SL Q G      +        E + +   +  +  + Y+ +    E+  +
Sbjct: 61  LLESVADLRRSLRQLGSDLLVRRG----HPEEVIPALVSELEIAAVHYHGEVTSEELVVE 116

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           + L+  L    V  +SF  + L+ P  +      + +++T FRK + +     +      
Sbjct: 117 RDLQAALAPLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQV-ERSAAINPPLPAP 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKV--YYYV 231
             +     V P  IP+  D   ++          F  GE + L  L ++  +K     Y 
Sbjct: 176 AKLPPLPAVDPGEIPQLADLGLESPVTDERAVLQFKGGETSGLARLEEYFWQKSLLKSYK 235

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           + R+ +     +S+ S +L++G LS R    +++      +       +  + EL+WR++
Sbjct: 236 QTRNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRI--KNDSTYWLIFELLWRDY 293

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +R + A +         +   + I W +D    + W+ G TGFP++DA MR+L   G+M 
Sbjct: 294 FRFIAAKHGDRLFYTAGLRGLD-IPWKEDWERFELWRTGQTGFPLVDANMRELAATGFMS 352

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   ASFL K+L + W +G E+F S+L+D D+ASN G W + A  GND+   FR FN
Sbjct: 353 NRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGVGNDARG-FRFFN 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
              Q + +DP G +++HWLPEL  +P   +H P   L          L ++YP P+VD  
Sbjct: 412 ILKQARDYDPDGAYVKHWLPELAGLPPARVHEPWKLLPVEQKRFGVRLGVDYPQPVVDLF 471

Query: 465 KACHHTLNQYYAA 477
           ++       Y AA
Sbjct: 472 QSAAANEAIYNAA 484


>gi|325528961|gb|EGD05987.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. TJI49]
          Length = 452

 Score =  356 bits (914), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 144/457 (31%), Positives = 226/457 (49%), Gaps = 32/457 (7%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +   Q  +++ SL ++  SLS  G      + +      E + S  ++ R   +F+NR+Y
Sbjct: 1   MGGAQKWWLHESLKKLDDSLSALGGSLLVLRGNEH----EAIRSLAVETRAAMVFWNRRY 56

Query: 113 EINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
              +   D  ++K L  R I   +F+  +L  P ++       ++V++ + +A  ++   
Sbjct: 57  SKAQTEMDASIKKDLIGRGIDVSTFNGHLLREPWTVATREGLPFQVFSAYWRAARRDNF- 115

Query: 172 ADLRSLPVPAIRLTGPVT---PSNIPRFFDYPFQAIDP--------MFPIGEQNALHILR 220
                LP PA     PV+    +++    +   Q   P         +  GE+ A H L 
Sbjct: 116 FPPCPLPAPARITFFPVSRNVSAHVSTLSELALQPSTPDWAEGLRATWRCGEEAAGHQLE 175

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP------ 274
            F +     Y   RD PA + TS+LSPYL  G +S RQ W         +  +       
Sbjct: 176 AFIENSFSDYAGARDFPATRATSRLSPYLRFGNISARQVWYATLSAVDAMRSRRVVRIDD 235

Query: 275 --KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
                   + +EL WREF  +L+     +     F    + + W  D+  L+AW++G TG
Sbjct: 236 AKNESLNKFFSELGWREFSYYLLYHCEPL-HQFNFRRQFDAMPWRTDAKALRAWQRGKTG 294

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P++DA MR+L   GWMHNR+RM+TASFL K LL+DWR GE +F   L+D D ASN  GW
Sbjct: 295 YPLVDAGMRELWHTGWMHNRVRMVTASFLTKHLLIDWREGEAWFWDTLVDADEASNPAGW 354

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-- 450
           QW + +G D+ PYFRIFNP +QG++FD  G + R W+PEL+ +P + +H+P +   +   
Sbjct: 355 QWVSGSGADAAPYFRIFNPVLQGEKFDSSGEYTRRWVPELSALPAETLHSPWTASAEALR 414

Query: 451 ----DLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
                L  +YP PIVDH+ A    L+       QS +
Sbjct: 415 EASIALGASYPFPIVDHQVARARALSSVEILNTQSQM 451


>gi|302541523|ref|ZP_07293865.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459141|gb|EFL22234.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC
           53653]
          Length = 445

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 138/466 (29%), Positives = 220/466 (47%), Gaps = 24/466 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   +  S  +    +DLR+ DN  L+AA   +D +V+ +F+              +  F
Sbjct: 1   MTPPSKPSTSIAVFTSDLRLRDNPVLHAALRAAD-RVVPLFVVDRRVAAAGFAVPNRVAF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L  +   L ++G            D++E +     Q    ++           RR+
Sbjct: 60  LRDCLADLDAGLRERGGRLIVRTG----DAVEEIRRVAEQVDAGEVHIAGGVSAFAGRRE 115

Query: 121 KLLEKRLQHRVICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             L + L           +VL    PG++       + V+TP+ +A     ++    +  
Sbjct: 116 ARLREAL---GGALRVHGAVLTAAEPGTVTPSGKDHFAVFTPYFRAWQGVELRRPFAAP- 171

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP 237
              +R+   V    +         +  P  P  GE+     L  + +  +  Y +++D  
Sbjct: 172 -RGVRVPPGVRSEPLSALSLLGSGSPSPGLPEGGERAGRRRLDAWLRSGLGAYADRQDDL 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A   TS+LSPYL  G LSP +  +R ++           GA +++ +L WR+F+  ++A 
Sbjct: 231 AGDATSRLSPYLHFGCLSPVELVHRARK-------SGGPGADAFVRQLAWRDFHHQVLAA 283

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P       + P  ++  W  D   + AWK G TG+PI+DA MRQL   GWMHNR R++ 
Sbjct: 284 RPD-ASHTDYRPRGDR--WRSDDAAVAAWKAGRTGYPIVDAGMRQLAAEGWMHNRARLLV 340

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL K L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP  Q +R
Sbjct: 341 ASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPLAQARR 399

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           FDP GT++R W+PEL ++P + +H P +  D    +L YP PIVD 
Sbjct: 400 FDPDGTYVRRWIPELADLPGRQVHTPWTLPDPERTALPYPPPIVDL 445


>gi|312138453|ref|YP_004005789.1| deoxyribodipyrimidine photolyase [Rhodococcus equi 103S]
 gi|311887792|emb|CBH47104.1| putative deoxyribodipyrimidine photolyase [Rhodococcus equi 103S]
          Length = 443

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 148/474 (31%), Positives = 217/474 (45%), Gaps = 35/474 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  LVW R DLR+ D   L AA   +    + +F+              +  F+Y SL 
Sbjct: 1   MTQSLVWFRRDLRVGDLPTLSAAGERA----LGLFVLDDRLLG--PSGGPRRDFLYRSLS 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L  + +V +        D +E +          ++  +  Y      RD  +   
Sbjct: 55  ALDEQLDGRLLVVR-------GDPVEVVPLVAKAIGAQEVHVSADYGPYGRERDAAVA-- 105

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              RV   +      + PG +       YKV+TP+ K  + +  +A   +       +  
Sbjct: 106 --ERVDLVTTGSPYAVAPGRVTKDDGSPYKVFTPWFKRWLDHGWRAPASTGADTLDWIDP 163

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                +  R       A  P    GE  AL     FC + +  Y  +RD P +  TS++S
Sbjct: 164 DDVDVSKARNAIPAPDASGPA--AGEAAALERWSAFCDDDLIRYDAERDRPDLDTTSRMS 221

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G + PR           DL  K   GA  +  ++ WR+FY  ++   P     + 
Sbjct: 222 VYLKFGNIHPRTML-------ADLARKRSHGAEQYRRQVAWRDFYADILFQRPDSAR-RN 273

Query: 307 FIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +    + +  +       +  AW +G TGFPI+DA MRQL + GWMHNR+RMI ASFLVK
Sbjct: 274 YDAKFDAMRHDTGRDADAMFAAWCEGRTGFPIVDAGMRQLVSEGWMHNRVRMIVASFLVK 333

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G  +FM  L+DGDLASN  GWQW A +G D+ PYFR+FNPT QG++FDP G 
Sbjct: 334 DLHLPWWRGARFFMQHLVDGDLASNQHGWQWTAGSGTDASPYFRVFNPTGQGEKFDPTGD 393

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           ++R W+PEL  V  + +H       K+     YP PIVDH +     L +Y A 
Sbjct: 394 YVRRWVPELRGVRGKAVHT-----LKDARPEAYPDPIVDHAEERREALARYGAL 442


>gi|156354106|ref|XP_001623243.1| predicted protein [Nematostella vectensis]
 gi|156209922|gb|EDO31143.1| predicted protein [Nematostella vectensis]
          Length = 524

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 142/486 (29%), Positives = 224/486 (46%), Gaps = 30/486 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGIS 54
           M  +      +  LRNDLR  DN+AL  A  N+D  V+ ++   P+ ++          +
Sbjct: 1   MATSKTQKTVICLLRNDLRYHDNEALLWAHKNAD-FVLPLYCFDPDHYKTTWRFSLPKTA 59

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             ++ F+  S+  ++ +L   G      QC   +   +  +       VT + + ++   
Sbjct: 60  QYRAKFLLESVTDLRSTLQIHGSNLIIRQCQPLEAVTKLTELLKPVAPVTSIVFQQEVTY 119

Query: 115 NEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-----IQN 168
            E+  +K L +  +   I   +   S L     I   A  +   YT FRK +     ++N
Sbjct: 120 EELNVEKALVEFCKKSGIHMHTIWGSTLFHKDDIPYKAKTVPDTYTQFRKGVENQSTVRN 179

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFP--IGEQNALHILRKFCK 224
           L+       P+P ++      P       D   + +D    FP   GEQ AL  L  +  
Sbjct: 180 LIDMPKNLKPLPPVKGELGTIPDLKSLLNDSEIKEVDQRSAFPFMGGEQEALSRLGSYLW 239

Query: 225 --EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
             + V  Y E R+ +     +++LSP+L+ G LSPR  ++R+K+   + +       +  
Sbjct: 240 GTDSVAKYKETRNGLLGENYSTKLSPWLANGSLSPRMVYHRIKQYEEERVANH--STYWV 297

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           L ELIWR++++ +   Y      +  I   + + W  D    + W +G TG P +DA MR
Sbjct: 298 LFELIWRDYFKFVCLKYGDRVFYRSGI-MGKSLPWKHDKMTFKLWCEGKTGVPFVDANMR 356

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   GWM NR R   ASFL+KDL +DWR G E+F S LLD D+ SN G W +AA  GND
Sbjct: 357 ELKETGWMSNRGRQNVASFLIKDLGLDWRYGAEWFESLLLDHDVCSNYGNWNYAAGIGND 416

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLN 455
                R FN   QG  +DP G +I+ W+PEL  +P   +H P +           +L + 
Sbjct: 417 PRE-GRKFNMVKQGLDYDPDGDYIKTWVPELAKIPGAKVHVPWTLKPGELRSSGVELGVT 475

Query: 456 YPLPIV 461
           YP PIV
Sbjct: 476 YPNPIV 481


>gi|255261881|ref|ZP_05341223.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
 gi|255104216|gb|EET46890.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
          Length = 473

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 147/483 (30%), Positives = 221/483 (45%), Gaps = 35/483 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  ++W R DLR+ D+ AL AA       ++ +FI       Q      +  F   S+  
Sbjct: 5   SPIILWFRRDLRLGDHPALAAAVATG-RPIVPLFIHDEVVEGQGAAPKMRLGF---SVEA 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL   G      +      +++ L     +     ++++R Y+     RD  ++  L
Sbjct: 61  LDRSLHGTGSRLVLRRG----RALDVLRKVITETGAGAVYWSRLYDPLSKERDTAVKSAL 116

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   V  +SF   +L  P ++       YKV+TP  KA+       DL        RL  
Sbjct: 117 KDDGVTAQSFAGHLLFEPWTVETKTGGFYKVFTPMWKAVR----GTDLPVSTPAPNRLEA 172

Query: 187 PVTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P          D+            +     +GEQ AL  L  F  E+V  Y   RD+P 
Sbjct: 173 PQEWPASDALADWAMDAAMMRGRDVLAAFCTVGEQAALSRLETFINERVGNYQTNRDLPR 232

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS+LS  L+ G ++P  CW+         L    + A  +L EL+WREF  HL+   
Sbjct: 233 VDGTSRLSENLTYGEIAPLTCWHAGWA----ALNHGDADAEVFLKELVWREFAYHLVHHT 288

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           P +     + P  +   WN D    +A  WKQG TG   +DAAMR++   G MHNR RMI
Sbjct: 289 PHITTDN-WKPDWDGFAWNTDETDPKAVAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMI 347

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS+L K L+  W+IG ++F   L+D D ASN  GWQW++ +G D+ PYFR+FNP  Q  
Sbjct: 348 VASYLTKHLMCHWKIGLKWFEDCLVDWDPASNAMGWQWSSGSGPDATPYFRVFNPVTQLD 407

Query: 417 RFDPQGTFIRHWLPELNNVPT----QYIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
           +FD    ++  W+ E  + P     +Y  A P  W  K   + +YP P+V  +      L
Sbjct: 408 KFDKNREYVDRWIAEGRSQPHADALRYFDAVPEHWAIKP--TDDYPAPVVSAEDGRKAAL 465

Query: 472 NQY 474
           + Y
Sbjct: 466 DAY 468


>gi|329115122|ref|ZP_08243877.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
 gi|326695565|gb|EGE47251.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
          Length = 522

 Score =  356 bits (913), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 159/486 (32%), Positives = 228/486 (46%), Gaps = 20/486 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M    + +  LV LR+D R+ DN AL+AAC      V+  ++       Q   + R + +
Sbjct: 50  MVNAPSPAPVLVLLRDDYRVADNPALHAACATGQ-PVLCAYVQDAAL--QDAPTTRIAGW 106

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
             A+  Q+  SL ++G                 + +       T +F+NR+Y+   +  D
Sbjct: 107 AQAACAQLATSLHKQGQTLLMLSGPTRLS----VPALAQAINATDVFWNRRYDAPGIAAD 162

Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +   L+   V   S    +L  P +I   A Q Y+V+T + +A             P 
Sbjct: 163 TDVHASLKKQGVTVHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRAARDLPEPPPPLPAPD 222

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQR 234
              +   P    N+P                P +  GEQ A   L +F +  +  Y  QR
Sbjct: 223 MHGKSYVPARALNLPEGVRLARVGTQMPPALPGWTSGEQCAHTNLHRFIENALEDYETQR 282

Query: 235 DI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           D   A  GTS LSPY+ +G +S RQ W+ ++     L  +  + A  +L EL WR+F   
Sbjct: 283 DRTDATHGTSLLSPYIRVGQISVRQIWHAIR-HAAHLHPQLATDAEKFLAELGWRDFAWM 341

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            M   P +   +        + W  D+  L AW+QG TGFP++DA MRQL   GWMHNR+
Sbjct: 342 QMFTTPDLAT-RNLRAEFNHMPWRTDATDLAAWQQGQTGFPLVDAGMRQLARTGWMHNRV 400

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RM+ ASFL K LL DW+ GE +F + LLD D A N   WQW A TG D+ P+FRIFNP  
Sbjct: 401 RMVVASFLTKHLLTDWQKGERWFYAHLLDADAAVNAMNWQWGAGTGIDAAPWFRIFNPVG 460

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q +++DP G +IR W+PEL  +  + IH P     +    LNYP PIVD K      L  
Sbjct: 461 QSEKYDPLGQYIRTWVPELAALDNKTIHTPWKSAQR----LNYPPPIVDLKLGRLRALEC 516

Query: 474 YYAAKK 479
           +    K
Sbjct: 517 WKNLPK 522


>gi|301622212|ref|XP_002940429.1| PREDICTED: cryptochrome-1-like [Xenopus (Silurana) tropicalis]
          Length = 531

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 126/494 (25%), Positives = 204/494 (41%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA  +  A++  +FI  P   R   +S  +  F+  +L  + 
Sbjct: 5   SIHWFRKGLRLHDNPALLAAMKDC-AELYPIFILDPWFPRNMKVSVNRWRFLIEALKDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQ 128
           ++L +        +        E       + +VT+L +    E    +RD  +EK   +
Sbjct: 64  ENLKKINSRLFVVRGKP----TEVFPLLFKKWKVTRLTFEVDTEPYSRQRDADVEKLAAE 119

Query: 129 HRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLP-------VP 180
           H V       + L     I+  +  +    Y  F+  L           +P         
Sbjct: 120 HNVQVIQKVSNTLYAIDRIIAENNGKPPLTYVRFQTVLALLGPPKRPVQVPTQENMKDCC 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235
            +  +       +P   +    ++     ++P GE  AL  L    K   +   + +   
Sbjct: 180 TLWKSSYNEKYGVPTLEELGQDSLKLGPRLYPGGESEALSRLELHMKRTTWVCNFKKPET 239

Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P      T+ LSPY+  G LS R  W R+ + +     K      S   +L+WREF+  
Sbjct: 240 EPNSLTPSTTVLSPYVKFGCLSARTFWWRIADIYQGK--KHSDPPVSLHGQLLWREFFYT 297

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+    +       +++W  +   LQAW +G TG+P IDA M QL T GW+H+  
Sbjct: 298 AGVGIPNFNKMEG-NTVCVQVDWGNNKEHLQAWSEGRTGYPFIDAIMTQLRTEGWIHHLA 356

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G++ F   LLD D + N G WQW  S       +FR+++P 
Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQW-LSASTFFHQFFRVYSPV 415

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
             GK+ D  G +I+ +LP L   P +YI+ P              +  +YP PIV+H  A
Sbjct: 416 AFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKAPRSLQERAGCIIGKDYPKPIVEHDVA 475

Query: 467 CHHTLNQYYAAKKQ 480
               + +  AA  +
Sbjct: 476 SKQNIQRMKAAYAR 489


>gi|297195865|ref|ZP_06913263.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197720806|gb|EDY64714.1| deoxyribodipyrimidine photolyase [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 457

 Score =  355 bits (912), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 143/478 (29%), Positives = 230/478 (48%), Gaps = 26/478 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L AA   +D +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MTVAVVLFTSDLRLHDHPPLRAALRAAD-EVVPLFVLDPGIGAAGFEAPNRCAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++G               + + +   +    ++           RR++LL   
Sbjct: 60  DLDASLRERGGRLVVRSGPV----AQQVGAIAAECGAGEVHMAAGVTRYARRREELLRTV 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+ R       D+V+  + PG++       Y V+TP+ +   Q  ++   R+     + +
Sbjct: 116 LRERGATLRTHDAVITVVAPGAVTPAGSDHYSVFTPYFRRWSQQRLRDPCRAPRTVPVPV 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           T    P             I P  P  GE         +    +  Y  Q D  A   TS
Sbjct: 176 TMHGEPLPSRDA----VPRISPGLPAGGESAGRKRFHDWEASGLDAYDVQHDSLAGDMTS 231

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G LSP +          +      +GA +++ +L WR+F+  +MA  P+  +
Sbjct: 232 RLSPYLHFGALSPLELV-------REASAHGGTGAEAFVRQLCWRDFHHQVMAARPASSV 284

Query: 304 GKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            + + P  ++     D+   + AWK+G TGFP++DAAMRQL   GWMHNR R++ ASFL 
Sbjct: 285 -EDYRPRHDRWRTQDDAAEDITAWKEGATGFPVVDAAMRQLRHEGWMHNRARLLVASFLT 343

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L VDWRIG  YF+ +L+DGD+ +N   WQW A TG D+ P+ R+ NP +QGKRFDP+G
Sbjct: 344 KTLYVDWRIGARYFLDRLVDGDIVNNQLNWQWVAGTGTDTRPH-RVLNPVVQGKRFDPRG 402

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++R W+PEL  +P   +H P          L+YP P++D  +     L ++  A+ +
Sbjct: 403 EYVRRWVPELREIPDGAVHEPWRLPADRRARLDYPDPLIDLAEG----LARFKHARGR 456


>gi|268317159|ref|YP_003290878.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252]
 gi|262334693|gb|ACY48490.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252]
          Length = 486

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 153/484 (31%), Positives = 224/484 (46%), Gaps = 22/484 (4%)

Query: 7   MSVHLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M + L+     DLR+ +N AL AA       ++ +FI      R     A +  +++ SL
Sbjct: 1   MPITLLLFTPGDLRLAENPALDAALRTGH-PIVPLFIWPRRAERFERPGAARRWWLHHSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +   L ++G           +D  E L        V  L +N     +E R    +  
Sbjct: 60  AALDAELQRRGSRLILRVA---EDPAEVLIQLLETLPVAALCWNLPLLPHERRLASSIAP 116

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+ R +         LL    +   +  +Y+V+TPF KAL Q  +     +  +P  R+
Sbjct: 117 VLRRRSIRLIETVGRTLLDLEQLRTKSGDVYRVFTPFWKALRQQYI---PPAPFLPPARI 173

Query: 185 TGPVTPSNIPRFF--------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
             P +  +             D+  + I   +  GE  A   LR F    + +Y   RD 
Sbjct: 174 PAPSSWPDSDTLESLALLPRPDWASETIASHWLPGEAAAWSTLRTFLAYGLPHYDRARDR 233

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
              + TS+LSPYL+ G +SP   W  + E     +        ++  +L WREF  +L+ 
Sbjct: 234 LDQEATSKLSPYLANGEISPHLLWRVVGEAQRAGVS--SKAVEAFRRQLAWREFGYYLLY 291

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     +P  P      W  ++  L+AW+ G TG P+IDAAMRQL   GWMHNR R++
Sbjct: 292 HFPE-TTHRPLRPEWSDFPWRTEAPELEAWQHGRTGIPVIDAAMRQLWQSGWMHNRTRLL 350

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS L K+L + W  G E+F   L+D DLA+N  GWQW A  G D+ PYFRIFNP +Q K
Sbjct: 351 VASLLTKNLRIHWLRGAEWFWDTLVDADLANNTLGWQWTAGCGADAAPYFRIFNPVLQSK 410

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLNYPLPIVDHKKACHHTLNQY 474
           +FDP+G +IR WLPEL  +P   IHAP       ++   + YP PIV    +    L  Y
Sbjct: 411 KFDPEGRYIRRWLPELGRLPAPCIHAPWEAPSCAEMLREIGYPSPIVSLMDSREEALALY 470

Query: 475 YAAK 478
              K
Sbjct: 471 ENWK 474


>gi|55251265|emb|CAH69046.1| cryptochrome 1a [Danio rerio]
          Length = 556

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 118/494 (23%), Positives = 190/494 (38%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L  +   + + V  V+I  P       +   +  F+   L  + 
Sbjct: 5   TVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +    D           +  + +L Y    E     RD  ++K    
Sbjct: 64  ASLRKLNSRLFVIRGQPTD----VFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119

Query: 130 RVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--------PVP 180
             +         L     I+        +     + LI  +   +  +         P  
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGPCT 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                       +P   +  F        ++P GE  AL  L +  + K +    +R   
Sbjct: 180 TPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFERPRM 239

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + +L + +  +  K  S   S   +L+WREF+  
Sbjct: 240 NANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYT 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 299 AATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 357

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPV 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP L   P +YI+ P +  +      K  + ++YP+P+V H +A
Sbjct: 417 SFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHHAEA 476

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 477 SRLNIERMKQIYQQ 490


>gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa]
 gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 141/512 (27%), Positives = 220/512 (42%), Gaps = 42/512 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------- 52
           M A+ + S  ++W R  LRI DN AL  A   SD  V  VF+  P               
Sbjct: 1   MAASGSGS--IIWFRKGLRIHDNPALEYASKGSD-FVYPVFVIDPHYMEPDPKAFSPGSR 57

Query: 53  -ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
                +  F+  SL+ +  SL + G      +        + L     +  V KL +   
Sbjct: 58  LAGLNRIRFLLESLVDLDTSLKKLGSRLLILRGEPG----QVLTRCLKEWGVKKLCFEYD 113

Query: 112 YEINEVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNL 169
            + +    D  +++      +   S     L  P  I+  +  +    Y  F K   Q  
Sbjct: 114 TDPHYQALDIRVKEYASAAGIEVFSPVSHTLFNPADIIQRNGGKPPLTYQSFLKLAGQPS 173

Query: 170 VQADLRSLPV---PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFC 223
             +      +   P +   G    S +P   D  +  I+  +     GE  AL  L++  
Sbjct: 174 WASSPLLTSISSLPPVGDVGSCEISEVPTIKDLGYGDIEQEWIPFRGGESEALKRLKESI 233

Query: 224 KEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            +K +   + + +  P+      T+ LSPYL  G LS R  +  L++ + ++  K  S  
Sbjct: 234 SDKEWVANFEKPKGNPSAFVKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVQ-KHTSPP 292

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S   +L+WR+F+  +    P+    +      ++I WN D  LL AW++  TG+P IDA
Sbjct: 293 VSLAGQLLWRDFFYTVAFGTPNFDRMEG-NKLCKQIPWNDDDELLAAWREARTGYPWIDA 351

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W  S
Sbjct: 352 IMVQLRKWGWMHHLARHSVACFLTRGDLFLHWERGRDVFERLLIDSDWAINNGNWLW-LS 410

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKND 451
             +    Y RI++P   GK++DP G +IRH+LP L ++P +YI+ P +         K  
Sbjct: 411 CSSFFYQYNRIYSPISFGKKYDPNGDYIRHFLPVLKDMPKEYIYEPWTAPPGIQRKAKCI 470

Query: 452 LSLNYPLPIVDHKKA---CHHTLNQYYAAKKQ 480
           +  +YP P+V H  A   C   L + YA  K+
Sbjct: 471 IGRDYPKPVVYHDSASKECKRKLAEAYALNKK 502


>gi|89054480|ref|YP_509931.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
 gi|88864029|gb|ABD54906.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
          Length = 468

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 148/479 (30%), Positives = 225/479 (46%), Gaps = 28/479 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W+R D R++DN AL AAC      V+ +FI         G  A     +   +   
Sbjct: 2   TTIYWVRRDFRLSDNPALVAACERG--AVVPLFICDEVIE---GHGAAPKWRLGLGVEAF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            ++L   G      +     D++  L +         + +NR Y+ +  +RD+ ++  L+
Sbjct: 57  AEALHAVGSKLILRRG----DALPTLRAVIADVSANAVHWNRLYDPDSRKRDEAVKAALK 112

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---L 184
              V   S    VL  P ++       YKVYTPF K +        L +  +PA      
Sbjct: 113 EDGVEAISHKGHVLFEPWTVETKTGGYYKVYTPFWKMVRDRSPGEALAAPKIPAPDTWPA 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  ++  ++ +  +   + + P   +GEQ A   L  F    +  Y + RD  A  GTS 
Sbjct: 173 SDDLSDWHLGKAMNRGAEVVAPHLNVGEQAAQGRLGAFIGNGIDDYADARDNLAKNGTSL 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS  L+ G +S RQCW+  +    D     K GA ++L E++WR+F  HL+   P +   
Sbjct: 233 LSENLAYGEISARQCWHAGQRAMAD----GKPGAETFLKEVVWRDFAYHLVHHTPRITTA 288

Query: 305 KPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +    E   WN D    +   WKQG TG  ++DAAMR++   G MHNR RM+ AS+L 
Sbjct: 289 N-WREEWEAFPWNTDPDTPEVTAWKQGRTGMAVVDAAMREMYVTGRMHNRARMLVASYLT 347

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L+ DW+IG ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  Q ++FD  G
Sbjct: 348 KHLMTDWKIGMDWFEECLVDWDPASNAMGWQWSAGSGPDATPYFRVFNPETQAEKFDKAG 407

Query: 423 TFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYY 475
            +   WL E+   P     A     P +W    D ++ YP  PIV   +     L+ Y 
Sbjct: 408 RYRMRWLAEITGKPQDTASAYFDAVPRAWGL--DPTMGYPSAPIVTASEGRKRALDAYE 464


>gi|18858461|ref|NP_571864.1| cryptochrome 1a isoform 2 [Danio rerio]
 gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio]
          Length = 556

 Score =  355 bits (911), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 120/497 (24%), Positives = 193/497 (38%), Gaps = 37/497 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L  +   + + V  V+I  P       +   +  F+   L  + 
Sbjct: 5   TVHWFRKGLRLHDNPSLRDSILGAHS-VRCVYILDPWFAGSSNVGISRWRFLLQCLEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +    D           +  + +L Y    E     RD  ++K    
Sbjct: 64  ASLRKLNSRLFVIRGQPTD----VFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL------------ 177
             +      S  L     L+  +++    +P      Q L+      +            
Sbjct: 120 AGVEVIVRISHTLY---DLDKIIELNGGQSPLTYKRFQTLISRMEAVVTPAETITAEVMG 176

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           P              +P   +  F        ++P GE  AL  L +  + K +    +R
Sbjct: 177 PCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVWPGGETEALTRLERHLERKAWVANFER 236

Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
                       + LSPYL  G LS R  + +L + +  +  K  S   S   +L+WREF
Sbjct: 237 PRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREF 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H
Sbjct: 296 FYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIH 354

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  +
Sbjct: 355 HLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCY 413

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463
            P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + ++YP+P+V H
Sbjct: 414 CPVSFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCIIGVHYPMPMVHH 473

Query: 464 KKACHHTLNQYYAAKKQ 480
            +A    + +     +Q
Sbjct: 474 AEASRLNIERMKQIYQQ 490


>gi|108799005|ref|YP_639202.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS]
 gi|119868120|ref|YP_938072.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS]
 gi|126434608|ref|YP_001070299.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS]
 gi|108769424|gb|ABG08146.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. MCS]
 gi|119694209|gb|ABL91282.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. KMS]
 gi|126234408|gb|ABN97808.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. JLS]
          Length = 445

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 145/472 (30%), Positives = 227/472 (48%), Gaps = 32/472 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+W R DLR+ D  AL  A    D +V+A ++  P          R+  +++ +L  +
Sbjct: 2   PTLLWFRRDLRLHDLPALVDAAQ-GDGQVLACYVLDPRL--HRSAGPRRLQYLHDALRDL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L  + +V +           + + +       + ++ +  +     RRD  + K L 
Sbjct: 59  RDQLDGRLLVTRGRPE-------QRIPALAKSIDASAVYVSGDFTPFGRRRDDAVRKALG 111

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V  +      L+ PG +       YKV++PF  A  ++  +A  +S P  A  +  P 
Sbjct: 112 E-VPLQPSGSPYLVSPGRVTKGDGTPYKVFSPFFDAWRRHGWRAPAQSGPDSATWI-DPA 169

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
             +      + P        P GE+ A    R F  +++  Y + R+ P +  TS++S +
Sbjct: 170 DLTGRDLRTEIPDDGATLDIPAGERAAAQHWRAFVADELDGYADNRNRPDLDVTSRMSAH 229

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G + PR   + L             GA ++L EL +R+FY  ++  +P       + 
Sbjct: 230 LKFGTIHPRTMVDDL---------GRGKGAQAYLRELAFRDFYAAVLHEWPRSVWWN-WN 279

Query: 309 PWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              + I  ++         AWK+G TGFPI+DA MRQL  IGWMHNR+RMI ASFLVKDL
Sbjct: 280 TGFDGIRVDEGAVAEQRFDAWKRGRTGFPIVDAGMRQLAGIGWMHNRVRMIVASFLVKDL 339

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W+ G  +F+ QL+DGD+A+N  GWQW A  G D+ P+FR+FNP+ QG +FDP GT++
Sbjct: 340 HLPWQWGARWFLEQLVDGDMANNQHGWQWTAGCGTDAAPFFRVFNPSTQGAKFDPDGTYV 399

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           R W+PEL  V   +          +D   +YP PIVDH       L +Y   
Sbjct: 400 RRWVPELKGVADVH-------KMGDDRPADYPAPIVDHAAERAEALRRYAEI 444


>gi|159029066|emb|CAO90052.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 485

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 135/487 (27%), Positives = 232/487 (47%), Gaps = 31/487 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLR+ D++A+Y A      ++I  +     Q+             ++ F+  S+
Sbjct: 4   LIWYRNDLRVHDHEAIYRAIQE-QLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +Q+SL   G      +        E +     + ++ +++Y+++    E+  +K + K
Sbjct: 63  ANLQQSLEGLGGNLIIRRGKPE----EIIPQLVQELQIARVYYHQEVTAEELAVEKAVNK 118

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    V  K+F  + L  P  +     Q+ +++T FRK + ++       + P    +L
Sbjct: 119 ALSGVPVQIKTFWTATLYHPDDLPFTVNQLPELFTNFRKQIERHWEIRTTYASPKKLTKL 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKVY--YYVEQRD- 235
              +   N+P   D     +         F  GE      ++++  +      Y E R+ 
Sbjct: 179 PK-IDWGNLPSLNDLGLTELILDRGGVLSFQGGEMAGKSRVKEYIWDSDSLKTYKETRNE 237

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ S +LS+G LSPR  +  + +++    +K  S  +  + EL+WR+F+R + 
Sbjct: 238 MLGTNYSSKFSAWLSLGCLSPRYIYEEV-QKYEQTRVKNDS-TYWLIFELLWRDFFRFIC 295

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           + + +    K  +     + W +D      W +G TG+P++DA MR+L   G+M NR R 
Sbjct: 296 SKHGNKIFYKSGLQEL-NLPWLEDWQRFNLWCEGKTGYPLVDANMRELAATGFMSNRGRQ 354

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL K+L +DWR+G E+F S L+D D+ SN G W + A  GND+   FR FN   Q 
Sbjct: 355 NVASFLTKNLGIDWRMGAEWFESLLVDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQS 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K +DP+G ++RHWLPEL  +    IH P+    +        L +NYP PIVD  ++  H
Sbjct: 414 KDYDPKGDYLRHWLPELALIKGDKIHEPYKLSLEEQKRYGVILGVNYPRPIVDFFQSIKH 473

Query: 470 TLNQYYA 476
               Y A
Sbjct: 474 NEKIYLA 480


>gi|56553448|gb|AAV97867.1| cryptochrome 2 [Sorghum bicolor]
          Length = 690

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 143/507 (28%), Positives = 236/507 (46%), Gaps = 30/507 (5%)

Query: 1   MKATTA-------MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI 53
           M A+++           +VW R DLR+ DN A  AA   +  +V+  ++ +PE+   +  
Sbjct: 1   MSASSSSLCGGDPAMRSVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWSPEEEGPYYP 59

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
                 +I  SL ++  SL + G      + S   D++  L         T +++N  Y+
Sbjct: 60  GRVSRWWISQSLKRLDASLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATHVYFNHLYD 117

Query: 114 INEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              + RD  L++ L    ++ +SF+  +L  P  +++   Q + ++T F    +      
Sbjct: 118 PISLVRDHRLKEMLAAEGIVVQSFNADLLYEPWEVVDDEGQPFTMFTAFWNRCLSMQYDP 177

Query: 173 DLRSLPVPAIRLTG-PVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKV 227
               LP   I      + PS    F D   +  + +    +  G QNA   L  F    +
Sbjct: 178 PAPLLPPKKINSGDLSMCPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPL 237

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLN 283
             Y   R       TS LSP+L  G LS R+ ++ ++ + +    +    A      +L 
Sbjct: 238 ADYSVNRKKADSASTSLLSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLR 297

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            +  RE+ R+L   +PS    +P +       W  +    + W+QG TG+P++DA MR+L
Sbjct: 298 SIGLREYSRYLSFNHPS-SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMREL 356

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   +  DS 
Sbjct: 357 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSR 416

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSL--NYP 457
              RI NP  +G +FDP G ++R W+PEL  +PT++IH P     S L    + L  NYP
Sbjct: 417 ELDRIDNPQFEGYKFDPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYP 476

Query: 458 LPIVDHKKACHH---TLNQYYAAKKQS 481
           LPIV+   A       L++ +  +  S
Sbjct: 477 LPIVELDAAKARLQEALSEMWQLEAAS 503


>gi|166366036|ref|YP_001658309.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
 gi|166088409|dbj|BAG03117.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
          Length = 485

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 133/485 (27%), Positives = 226/485 (46%), Gaps = 31/485 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W RNDLR+ D++A+Y A      ++I  +     Q+             ++ F+  S+
Sbjct: 4   LIWYRNDLRVHDHEAIYQAVQE-QFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESV 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL   G      +    D     +     + ++ K++Y+++    E+  +K + K
Sbjct: 63  ADLRQSLESLGGNLIIRRGKPED----IIPQLVQELQIAKVYYHQEVTAEELAVEKAVNK 118

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    V  K+F  + L  P  +     Q+ +++T FRK + ++         P    +L
Sbjct: 119 ALSGVPVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIRATYPTPKKLTKL 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKVY--YYVEQRD- 235
              +   N+P   D               F  GE      ++++  +      Y E R+ 
Sbjct: 179 PK-IELGNLPSLNDLGLTESILDRGGVLSFQGGEMAGKSRVKEYIWDSDSLKTYKETRNE 237

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+ S +LS G LSPR  +  + +++    +K  S  +  + EL+WR+F+R + 
Sbjct: 238 MLGTNYSSKFSAWLSFGCLSPRYIYEEV-QKYEQTRVKNDS-TYWLIFELLWRDFFRFMC 295

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             + +    K  +     + W +D      W +G TG+P++DA MR+L   G+M NR R 
Sbjct: 296 RKHGNKIFYKSGLQEL-YLPWLEDWERFNLWCEGKTGYPLVDANMRELAATGFMSNRGRQ 354

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL K+L +DW +G E+F S L+D D+ SN G W + A  GND+   FR FN   Q 
Sbjct: 355 NVASFLSKNLGIDWCMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARG-FRYFNIPKQS 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           K +DP+G ++RHWLPEL  +    IH P+    +        L +NYP PIVD  ++  H
Sbjct: 414 KDYDPKGDYLRHWLPELALIKGDKIHEPYKLSPEEQKRYGVILGVNYPRPIVDFFQSIKH 473

Query: 470 TLNQY 474
               Y
Sbjct: 474 NEKIY 478


>gi|28201254|dbj|BAB70688.2| cryptochrome 1b [Oryza sativa Japonica Group]
          Length = 700

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 142/491 (28%), Positives = 229/491 (46%), Gaps = 23/491 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ DN A  AA   +  +V+  ++  PE+   +        ++  SL  + 
Sbjct: 20  TVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLD 78

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQ 128
            SL + G      + S   D++  L         T+LF+N  Y+   + RD  L++    
Sbjct: 79  ASLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAA 136

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-P 187
             +I +SF+  +L  P  +++   Q + ++ PF    +          LP   I      
Sbjct: 137 EGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLS 196

Query: 188 VTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           + PS+   F D   +  + +    +  G QNA   L  F    + +Y   R       TS
Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ ++ ++ + +    +    A      +L  +  RE+ R+L   +P
Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 316

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 317 -CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 375

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G +FD
Sbjct: 376 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFD 435

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHT 470
           P G ++R WLPEL  +PT++IH P             +L  NYPLPIV  D   A     
Sbjct: 436 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEA 495

Query: 471 LNQYYAAKKQS 481
           L++ +  +  S
Sbjct: 496 LSEMWQLEAAS 506


>gi|315444996|ref|YP_004077875.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. Spyr1]
 gi|315263299|gb|ADU00041.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium sp. Spyr1]
          Length = 446

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 149/471 (31%), Positives = 230/471 (48%), Gaps = 31/471 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ D  AL AA    D  V+A ++  P         +R+  ++Y +L  +++S
Sbjct: 2   LWFRRDLRLADLPALVAAAE-VDGDVLACYVLDPRLKAT--GGSRRLQYLYDALRDLRES 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L  + ++          D +  +         + +  +  +    +RRD+ +   L   V
Sbjct: 59  LDGRLLI-------TRGDPVSRIPVLAAAVGASSVHVSEDFTPFGMRRDEQVRDALGD-V 110

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
              +     L+ PG +       YKV+TPF  A  Q+  +    S P  A     P   +
Sbjct: 111 ELVATGSPYLVSPGRVTKGDGSPYKVFTPFFDAWRQHGWRPPAESGPRSA-HWLDPADVA 169

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
             P   D P   ++   P GE  A    ++F  + +  Y E R+ P +  TS++S +L  
Sbjct: 170 GKPGITDIPDAGVELDLPAGETAARRQWKQFVDDGLAGYAEDRNRPDLAATSRMSAHLKF 229

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G + PR              +    GA ++L EL +R+FY  ++A +P       +    
Sbjct: 230 GTIHPRTL---------AADLGRGKGAQAYLRELAFRDFYAAVVAEWPRSTWWN-WNSTF 279

Query: 312 EKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           + IE +         +AWK G TGFPI+DA MRQL   G++HNR+RMI ASFLVKDL + 
Sbjct: 280 DAIEVDDGPDAQRAFEAWKAGRTGFPIVDAGMRQLAETGFVHNRVRMIVASFLVKDLHLP 339

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W+ G  +F+ QL DGD+A+N  GWQWAA  G D+ PYFR+FNPT QGK+FDP G +++ W
Sbjct: 340 WQWGARWFLDQLTDGDMANNQHGWQWAAGCGTDAAPYFRVFNPTTQGKKFDPAGVYVKRW 399

Query: 429 LPELNNVPTQ-YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + EL +V +   +H         D   +YP PIVDH +     L +Y + +
Sbjct: 400 VEELRDVASSVDVHN-----LDRDRPADYPEPIVDHAQERAEALRRYNSLR 445


>gi|254450032|ref|ZP_05063469.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238]
 gi|198264438|gb|EDY88708.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238]
          Length = 469

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 224/480 (46%), Gaps = 26/480 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   + W+R D RI DN AL AAC  S   VIA+FI   E    HG + +    +   + 
Sbjct: 1   MKPVIYWVRRDFRIGDNAALSAACA-SGRPVIALFICD-EVVEGHGAAPKFR--LGEGVR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
               +L++ G      +     D++  L    +Q  V  +++NR Y+     RD  ++  
Sbjct: 57  VFGAALAEAGSRLILRRG----DALAVLRELVVQTGVQAIYWNRLYDPASKARDTGVKAA 112

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLPVPAI 182
           L+   I   SF   +L  P ++       Y+V+TP  K +    V        S+PVP +
Sbjct: 113 LKDDGIEVASFAGHLLFEPWTVETKTGGFYRVFTPLWKTVRGREVATPIAAPASVPVPDV 172

Query: 183 R-LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              +  +    +          +     +GE+ A   L  F  E+V  Y   RD+P++ G
Sbjct: 173 WPASDQLDDWKLGGAMRRGRDVLAAHICVGEEAARSRLDTFIDERVQSYQTNRDMPSVDG 232

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LS  L+ G +SP  CW+         +   K  A  +  EL+WREF  HL+   P +
Sbjct: 233 TSRLSENLTYGEISPAVCWHAGWA----AIHSGKGQAEVFCKELVWREFAYHLVHHTPHI 288

Query: 302 CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
            + + +    +   WN D    + AWKQG TG P +DAAMR++   G MHNR RMI AS+
Sbjct: 289 -VDRNWKEGWDAFPWNTDDTAEVMAWKQGRTGVPFVDAAMREMYVSGTMHNRGRMIVASY 347

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L+  W++G+ +F   L D D ASN  GWQWAA +G D+ PYFR+FNP  Q  +FD 
Sbjct: 348 LTKHLMTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLDKFDH 407

Query: 421 QGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            G + R W+ E           Y  A P SW      S  YP P+VD        L  Y 
Sbjct: 408 AGLYARTWIAEGQGEAPDTALSYFDAIPKSWGLAP--SDVYPAPVVDMATGRQRALEAYK 465


>gi|332185330|ref|ZP_08387079.1| DNA photolyase family protein [Sphingomonas sp. S17]
 gi|332015054|gb|EGI57110.1| DNA photolyase family protein [Sphingomonas sp. S17]
          Length = 455

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 144/482 (29%), Positives = 222/482 (46%), Gaps = 41/482 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S H+VW R DLR+ D  AL AA       V+ V+I   E      +   Q  +++ SL  
Sbjct: 3   SPHIVWFRQDLRLHDQPALLAAAEAG--PVLPVYILDDETPGDWKMGGAQRWWLHHSLEA 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + K L   G      +      ++E L +   +     +   R YE    + +  L  RL
Sbjct: 61  LAKDLKALGSRLILRRG----RAVEVLQALSKEAGAEAIHAIRHYEPWWRKAEDELGDRL 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                   +D + L  P  +   + + +++Y+ F K L  ++        P     LT P
Sbjct: 117 ------CLYDGNHLARPELVTTGSGKPFRIYSAFWKGLQGHMPPEHPLEAPD---ALTAP 167

Query: 188 VTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  +  D+             D  +  GE  A   +  F   K   Y   R++P+ 
Sbjct: 168 DRWPASDKLADWDLLPTKPDWSTGFDADWTPGEATARERMADFVA-KAAAYDTARNMPSE 226

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +G+S+LSP+L  G +SPR  W+ L           K+   ++  EL WR+F   ++   P
Sbjct: 227 EGSSRLSPHLHFGEVSPRAVWHAL---------DRKAETETFRKELAWRDFTDGVVMAIP 277

Query: 300 SVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                +      +K+ W K +     L+AW+ G+TG+PI+DA MRQL T GWMHNR+RMI
Sbjct: 278 DYA-DRNGREAFDKMPWRKGAEAEADLKAWRTGHTGYPIVDAGMRQLWTTGWMHNRVRMI 336

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFL+K LL+DWR GE +F   L+D D  +N+  WQW A TG D+  + RI  P  Q +
Sbjct: 337 TASFLIKHLLIDWREGERWFWDCLVDADYGNNSVNWQWVAGTGIDANMFGRIMAPLSQSE 396

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FD  G +IR W+PEL ++    IH P    +      +YP  I+ H++     L    +
Sbjct: 397 KFDA-GDYIREWVPELKDLSDAAIHDPD---EAGCRPKDYPAKIIGHREGRERALAAGKS 452

Query: 477 AK 478
            +
Sbjct: 453 VR 454


>gi|72383487|ref|YP_292842.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
           str. NATL2A]
 gi|72003337|gb|AAZ59139.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
           str. NATL2A]
          Length = 493

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 162/498 (32%), Positives = 241/498 (48%), Gaps = 39/498 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQV 68
            + W R DLR  DN  L+ A  NS + +I V++  P+        S  ++ F+  SL+++
Sbjct: 6   SIFWHRRDLRFGDNIGLFEASKNSKS-LIGVYVLDPKLLDLNRTTSEAKNWFLGESLIEL 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           QK+   +G            D IE +           +++N   E  E+ RDK + ++L 
Sbjct: 65  QKNWEIRGSRLLILNG----DPIELISKLAELVHAECIYWNENIEPYEINRDKQIAEKLS 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------------------- 168
           + +    +F D +++ P +I  +  + YKVY PF +  I                     
Sbjct: 121 KEKRKVYTFLDQLIVNPSNIKTNNDEPYKVYGPFYRKWIDLINITKSSENNLIQTSETAK 180

Query: 169 ----LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKF 222
               L + +L S+    +         +I             + P   GE  ++  L  F
Sbjct: 181 QLTGLNERELSSIKNSDLNYCITNKSKSIYELLSLNRFNKTNLCPCKPGESESIKQLNSF 240

Query: 223 CKEK-VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFS 280
                +  Y + RDIP+++ TS LS  LS+G +S R  WN  +        + K +   +
Sbjct: 241 IHSGVINSYNKARDIPSLENTSHLSAALSLGTISCRVVWNGAQVSKNATDDEYKINSIDT 300

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           W+ EL WREFY++ +  +P +  G P+        W       +AW  G TG PIIDAAM
Sbjct: 301 WIKELAWREFYQNALINFPELEKG-PYREKWLDFPWQNRPDWFEAWGDGLTGIPIIDAAM 359

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQL   GWMHNR RMI ASFLVKDLL+DWR+GE +FM  L+DGDLA+NNGGWQW+AS+G 
Sbjct: 360 RQLKCSGWMHNRCRMIVASFLVKDLLIDWRLGELFFMKSLVDGDLAANNGGWQWSASSGM 419

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D  P  RIFNP  Q  +FD  G +IR W+PEL+++ T  + +      + +   +YP PI
Sbjct: 420 DPKPM-RIFNPFRQASKFDEDGEYIRKWIPELSHISTPNLLSGEISSAERN---SYPKPI 475

Query: 461 VDHKKACHHTLNQYYAAK 478
           + HK         Y   K
Sbjct: 476 ISHKNQTSIFKELYSNIK 493


>gi|189502200|ref|YP_001957917.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497641|gb|ACE06188.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 486

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 151/490 (30%), Positives = 237/490 (48%), Gaps = 29/490 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++    +LR  D   L     ++   +I +FI  P+   +  +      ++Y S+   ++
Sbjct: 7   ILVFYQNLRFHDQPLLLEVLQHTQ-PIIPIFINDPKVIER--LGEASQWWLYQSIRAFKQ 63

Query: 71  SLSQK-GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
                  I           DS+  L     +    K++  ++Y   E   D+ + + L +
Sbjct: 64  QWKSAYNIELILRTG----DSVRVLQQLLQETNANKIYLGKRYTKLEREIDERIYEELNR 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +  K F+  +L  P +I N     ++++TPF K  +   ++AD   LP P     G  
Sbjct: 120 DGITIKFFNTHLLFEPANIKNQQGNSFQIFTPFWKTCLTKTIEAD---LPAPDHIFNGYN 176

Query: 189 TPSNIPRFFDYPFQAIDPMFP--------IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            P N     D+ +      +         + E  AL+ L  F K  +  Y   RD+ A  
Sbjct: 177 QPINSDDLSDWKWGHSQAAWTRKLANHWHLSELAALNKLAIFLKNSLAGYNNNRDLIASP 236

Query: 241 G-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +SQLSPYL  G +S ++ +N +           + G  ++L E+ WREF  +L+  +P
Sbjct: 237 SFSSQLSPYLRWGQISAKKIFNEVIHTMERDPTIQQDGN-TFLKEIGWREFSYYLLYHHP 295

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S     P     +   +  +  LL+ W++G TGFPIIDA MRQL   GWM NRLRMI AS
Sbjct: 296 S-MQEVPLNKRFQDFPYENNLSLLEKWQKGTTGFPIIDAGMRQLWLEGWMPNRLRMIVAS 354

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL+KDLL++W+ G+ +F+  L+D D A+N   WQW A  G D+ PYFRIFNP  QGK+FD
Sbjct: 355 FLIKDLLINWQFGQAWFIDTLVDADPANNANSWQWVAGCGTDASPYFRIFNPITQGKKFD 414

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473
            +G +IR ++PEL ++PT+YIH P              +  +YP PIVDH    +  L+ 
Sbjct: 415 SEGKYIRKYVPELKDLPTKYIHQPWEMPITLQEEYNVIIGKDYPHPIVDHTIQKNKALDC 474

Query: 474 YYAAKKQSLL 483
           +   K +  L
Sbjct: 475 WKEFKGKGYL 484


>gi|115458700|ref|NP_001052950.1| Os04g0452100 [Oryza sativa Japonica Group]
 gi|113564521|dbj|BAF14864.1| Os04g0452100 [Oryza sativa Japonica Group]
 gi|218194950|gb|EEC77377.1| hypothetical protein OsI_16111 [Oryza sativa Indica Group]
          Length = 700

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 142/491 (28%), Positives = 229/491 (46%), Gaps = 23/491 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ DN A  AA   +  +V+  ++  PE+   +        ++  SL  + 
Sbjct: 20  TVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLD 78

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQ 128
            SL + G      + S   D++  L         T+LF+N  Y+   + RD  L++    
Sbjct: 79  ASLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAA 136

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-P 187
             +I +SF+  +L  P  +++   Q + ++ PF    +          LP   I      
Sbjct: 137 EGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLS 196

Query: 188 VTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           + PS+   F D   +  + +    +  G QNA   L  F    + +Y   R       TS
Sbjct: 197 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 256

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ ++ ++ + +    +    A      +L  +  RE+ R+L   +P
Sbjct: 257 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 316

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 317 -CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 375

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G +FD
Sbjct: 376 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFD 435

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHT 470
           P G ++R WLPEL  +PT++IH P             +L  NYPLPIV  D   A     
Sbjct: 436 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEA 495

Query: 471 LNQYYAAKKQS 481
           L++ +  +  S
Sbjct: 496 LSEMWQLEAAS 506


>gi|21740729|emb|CAD40850.1| OSJNBa0086B14.23 [Oryza sativa Japonica Group]
 gi|116310174|emb|CAH67187.1| H0815C01.8 [Oryza sativa Indica Group]
          Length = 693

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 142/491 (28%), Positives = 229/491 (46%), Gaps = 23/491 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ DN A  AA   +  +V+  ++  PE+   +        ++  SL  + 
Sbjct: 13  TVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLD 71

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQ 128
            SL + G      + S   D++  L         T+LF+N  Y+   + RD  L++    
Sbjct: 72  ASLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAA 129

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-P 187
             +I +SF+  +L  P  +++   Q + ++ PF    +          LP   I      
Sbjct: 130 EGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLS 189

Query: 188 VTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           + PS+   F D   +  + +    +  G QNA   L  F    + +Y   R       TS
Sbjct: 190 MCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTS 249

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299
            LSPYL  G LS R+ ++ ++ + +    +    A      +L  +  RE+ R+L   +P
Sbjct: 250 LLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP 309

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R++ +S
Sbjct: 310 -CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 368

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G +FD
Sbjct: 369 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFD 428

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHT 470
           P G ++R WLPEL  +PT++IH P             +L  NYPLPIV  D   A     
Sbjct: 429 PHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEA 488

Query: 471 LNQYYAAKKQS 481
           L++ +  +  S
Sbjct: 489 LSEMWQLEAAS 499


>gi|27380421|ref|NP_771950.1| DNA photolyase [Bradyrhizobium japonicum USDA 110]
 gi|27353585|dbj|BAC50575.1| DNA photolyase [Bradyrhizobium japonicum USDA 110]
          Length = 442

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 146/450 (32%), Positives = 214/450 (47%), Gaps = 23/450 (5%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR 102
                 R  G +AR   ++  SL  +   ++ +G      +          +     +  
Sbjct: 2   LDETAGRAPGGAAR--WWLAQSLRALGAEIAARGGSLILRKGPAAG----VIPEEARESG 55

Query: 103 VTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161
              +++N   +      ++ LE  L    V  +SF   +L+PP +I N   +  +V+TPF
Sbjct: 56  ARAVYWNGIAQAPHQAIERRLEAALAKLGVDSQSFPGDLLVPPSAIRNKEGRGLRVFTPF 115

Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP------FQAIDPMFPIGEQNA 215
            + ++   +    + LP P     GP   S+    +            +   +  GE +A
Sbjct: 116 WRRVLS--LGDPPKPLPAPKQLRPGPKIVSDRLESWQLAPTKPDWAGGLRERWTPGEASA 173

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
              LR F K     Y   RD P   GTS LSP+L  G LSPRQ W+  +    +      
Sbjct: 174 RARLRDFLKTIARGYAGDRDRPDRVGTSGLSPHLRFGELSPRQVWHAARFAAAEDAALG- 232

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
            G   +L+EL WREF RHL+  +P +          +   W  D  +L AW++G TG+PI
Sbjct: 233 PGIEKFLSELGWREFCRHLLHDHPDLATEN-LQTNFDGFPWQSDGKVLAAWQRGRTGYPI 291

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DA +R+L   G MHNR+RM+ ASFLVK LL+DWR GE +F   L+D D  SN   WQW 
Sbjct: 292 VDAGLRELWHTGVMHNRVRMVVASFLVKHLLIDWRDGEAWFWDTLVDADAGSNPANWQWV 351

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----- 450
           A  G D+ PYFR+FNP +QG++FDP GT++R W+PEL  +P + IH P            
Sbjct: 352 AGCGADAAPYFRVFNPQLQGEKFDPDGTYVRRWVPELQGLPAKLIHQPWQATPNELASAG 411

Query: 451 -DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
             L   YP PIVDH +     L+ Y   +K
Sbjct: 412 VTLGKTYPQPIVDHARGRERALSAYAKIRK 441


>gi|254511542|ref|ZP_05123609.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
 gi|221535253|gb|EEE38241.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
          Length = 479

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 154/495 (31%), Positives = 226/495 (45%), Gaps = 36/495 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M    A S  ++W R DLR++D+ AL AA       ++ VFI          + A     
Sbjct: 1   MDMAPAHSAIILWFRRDLRLSDHPALSAAMRTG-RPIVPVFILDDAV---QALGAAPKWR 56

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L    K LSQ G      Q +    +++ L+S         +F++R YE   + RD
Sbjct: 57  LGLGLEAFAKGLSQIGSRLILRQGA----ALDVLESLIRDTGAGTVFWSRGYEPVSIARD 112

Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++  L    +  +SF   +L  P +I   + Q ++++TP  +A+       D+ +   
Sbjct: 113 TRIKSALTGQGIEVRSFAGHLLFEPWTIATKSGQPFRMFTPMWRAVQGR----DVPTPEP 168

Query: 180 PAIRLTGPVTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
              RL  P       +  D+          +   P    GE  A   L  F   ++  Y 
Sbjct: 169 GPARLMAPEGWPGSDQLADWQLGRDMRRGARIARPFIRPGEVAARDQLDGFL-HRIDQYA 227

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           EQRD     GTS LS YLS+G + PR  W+R++            GA ++L +L+WREF 
Sbjct: 228 EQRDRVDKTGTSDLSEYLSLGEIGPRMIWHRVQNAAR----TGAPGADAYLRQLVWREFA 283

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWM 349
            HLM  +P +     + P  +   W  D    +   W+Q  TG P++DA +RQ+   G M
Sbjct: 284 YHLMYHWPHLLTDN-WKPEWDTFPWGTDPDTPEIRAWRQARTGIPLVDAGLRQMYVTGRM 342

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RMI AS+L K L+  W++G ++F   L D D A+N  GWQW A +G D+ PYFRIF
Sbjct: 343 HNRARMIVASYLTKHLMTHWKLGADWFADCLTDWDPAANAMGWQWVAGSGPDAAPYFRIF 402

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHK 464
           NP  Q  RFDP   +IR W+ E    P     A     P SW    D    YP P+V  K
Sbjct: 403 NPQTQRVRFDPDEGYIRRWIAEGQARPEATALAYFDAIPRSWGLSPDDP--YPEPVVGLK 460

Query: 465 KACHHTLNQYYAAKK 479
           +     L  + + KK
Sbjct: 461 QGRTRALRAFESRKK 475


>gi|291443506|ref|ZP_06582896.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
           15998]
 gi|291346453|gb|EFE73357.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
           15998]
          Length = 456

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 137/469 (29%), Positives = 219/469 (46%), Gaps = 22/469 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SV +V   +DLR+ D+  L AA  ++D +V+ +F+      R    +  +  F+   L  
Sbjct: 3   SVAVVLFTSDLRLHDHPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLAD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L  +G      +          +     Q     +           +R++ + + L
Sbjct: 62  LDTGLRDRGGRLIVRRGGT----AREVKRVVEQTGADSVHIAAGVSGYAAQREERIREAL 117

Query: 128 QHRVICKSFDDSVL--LPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                     D+V+  L PG +        + V+TP+ +      V+  L +     +R+
Sbjct: 118 AGTGCELRVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLAAP--RTVRV 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              V+   +P   D        +   GE+    ++  +    +  Y +  D  A   TS+
Sbjct: 176 PDGVSGDALPD-RDAVKGVSPGLARGGEEAGRKLVTSWLHGPMAAYEDGHDDLAGDATSR 234

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G +S  +  NR +E       K   G  +++ +L WR+F+  ++A  P     
Sbjct: 235 LSPHLHFGTVSAAELANRARE-------KGGPGGEAFVRQLAWRDFHHQVLAARPDASWS 287

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             + P  ++  W  D   ++AWK G TG+P++DAAMRQL   GWMHNR RM+TASFL K 
Sbjct: 288 -DYRPRHDR--WRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTASFLTKT 344

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGKRFDP G +
Sbjct: 345 LYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDPDGAY 403

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           +R W+PEL  V    +H P      +   ++YP P+VD  +A       
Sbjct: 404 VRRWVPELAEVEGPAVHEPWKLEGLDRAGVDYPDPVVDLAEARSRFERA 452


>gi|307826660|gb|ADN94465.1| cryptochrome 2 [Helicoverpa armigera]
          Length = 648

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 130/493 (26%), Positives = 197/493 (39%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL     ++ A    VFI  P       +   +  F+   L  +  
Sbjct: 39  VHWFRKGLRLHDNPALREGLLDA-ATFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDS 97

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
           SL +        +        + L     +   T L +    E     RD  +  + +  
Sbjct: 98  SLRKLNSRLFVVRG----QPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMSKCREV 153

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +   S     L     I+        +     +ALI ++        P+ A  L G  T
Sbjct: 154 GITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALIASMPPPPPAEAPISAQMLNGATT 213

Query: 190 PSN--------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P N        +P   +  F+      P++  GE  AL  L +  + K +     R    
Sbjct: 214 PLNDDHDDRFGVPTLEELGFETEGLKPPVWIGGESEALARLERHLERKAWVASFGRPKMT 273

Query: 239 IQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R  + +L E +    +K      S   +++WREF+   
Sbjct: 274 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYK--RVKRVRPPLSLHGQILWREFFYCA 331

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +I W K+   L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 332 ATRNPNFDRMEG-NPICVQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREEGWIHHLAR 390

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P  
Sbjct: 391 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVR 449

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G FIR ++P L N+PT+YIH P    +      +  +  +YP+P+VDH KA 
Sbjct: 450 FGRKTDPNGDFIRRYIPALKNMPTRYIHEPWVAPEAVQQSARCIIGRDYPMPMVDHSKAS 509

Query: 468 HHTLNQYYAAKKQ 480
              + +      Q
Sbjct: 510 QVNIERIKQVYAQ 522


>gi|23506659|gb|AAN37909.1| cryptochrome 2 apoprotein [Sorghum bicolor]
          Length = 691

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 144/508 (28%), Positives = 236/508 (46%), Gaps = 31/508 (6%)

Query: 1   MKATTAMSV--------HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG 52
           M A ++ S+         +VW R DLR+ DN A  AA   +  +V+  ++ +PE+   + 
Sbjct: 1   MSAVSSSSLCGGDPAMRSVVWFRRDLRVEDNPA-LAAAARAGGEVVPAYVWSPEEEGPYY 59

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
                  +I  SL  +  SL + G      + S   D++  L         T +++N  Y
Sbjct: 60  PGRVSRWWISQSLKHLDASLRRLGAGKLVTRRSA--DAVVALLQLVRDTGATHVYFNHLY 117

Query: 113 EINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           +   + RD  L++ L    ++ +SF+  +L  P  +++   Q + ++T F    +     
Sbjct: 118 DPISLVRDHRLKEMLAAEGIVVQSFNADLLYEPWEVVDDERQPFTMFTAFWNRCLSMQYD 177

Query: 172 ADLRSLPVPAIRLTG-PVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226
                LP   I      + PS    F D   +  + +    +  G QNA   L  F    
Sbjct: 178 PPAPLLPPKKINSGDLSMCPSEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGP 237

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WL 282
           +  Y   R       TS LSP+L  G LS R+ ++ ++ + +    +    A      +L
Sbjct: 238 LADYSVNRKKADSASTSLLSPHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFL 297

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             +  RE+ R+L   +PS    +P +       W  +    + W+QG TG+P++DA MR+
Sbjct: 298 RSIGLREYSRYLSFNHPS-SHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRE 356

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+   +  DS
Sbjct: 357 LWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDS 416

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSL--NY 456
               RI NP  +G +FDP G ++R W+PEL  +PT++IH P     S L    + L  NY
Sbjct: 417 RELDRIDNPQFEGYKFDPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNY 476

Query: 457 PLPIVDHKKACHH---TLNQYYAAKKQS 481
           PLPIV+   A       L++ +  +  S
Sbjct: 477 PLPIVELDAAKARLQEALSEMWQLEAAS 504


>gi|149635020|ref|XP_001507425.1| PREDICTED: similar to Cryptochrome 2 (photolyase-like)
           [Ornithorhynchus anatinus]
          Length = 582

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 122/485 (25%), Positives = 193/485 (39%), Gaps = 31/485 (6%)

Query: 19  RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           R+ DN AL AA   + + V  V+I  P       +   +  F+  SL  +  SL +    
Sbjct: 20  RLHDNPALQAALRGARS-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSR 78

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFD 137
               +    D           +  VT+L +    E     RD  + K  +   V   + +
Sbjct: 79  LFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKERDAAIVKMAKEAGVEVVTEN 134

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197
              L     I+    Q   +     +A+I  +         V + ++ G           
Sbjct: 135 SHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVSCVTSQQMEGCKAEIQDNHDD 194

Query: 198 DYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT---- 242
            Y   +++ +           +  GE  AL  L K  + K +    +R            
Sbjct: 195 TYGVPSLEELGFPTDGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASP 254

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+       P   
Sbjct: 255 TGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNPRFD 313

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL 
Sbjct: 314 RMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLT 372

Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           + DL V W  G   F   LLD D + N G W W  S       +F  + P   G+R DP 
Sbjct: 373 RGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPS 431

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FIR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +     + +  
Sbjct: 432 GDFIRRYLPKLKAFPSRYIYEPWNAPESVQKAAKCVIGVDYPRPIVNHAETSRLNIERMK 491

Query: 476 AAKKQ 480
              +Q
Sbjct: 492 QIYQQ 496


>gi|260427905|ref|ZP_05781884.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
 gi|260422397|gb|EEX15648.1| deoxyribodipyrimidine photo-lyase [Citreicella sp. SE45]
          Length = 475

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 154/487 (31%), Positives = 224/487 (45%), Gaps = 28/487 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M+ + +  + +VW+R DLR+TD+ AL+ A   S   VI VFI          + A     
Sbjct: 1   MRMSESSPI-IVWIRRDLRLTDHAALHEA-GRSGRPVIPVFIRD---HGVDSLGAAPKWR 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L    K L  KG               E L++   +     +++ R Y+   + RD
Sbjct: 56  LGQGLGHFAKLLGDKGSRLVLRAGPAR----EVLEALIDETAAGAVWWQRAYDPAAIERD 111

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-- 177
             ++  L+ R    +SF   +L  P ++       YKVY+PF +A+ +  V   L +   
Sbjct: 112 TAVKAALKDRGTDVRSFAGHLLFEPWTVETKQGGYYKVYSPFWRAVCERDVPEPLAAPSK 171

Query: 178 --PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
             P  +      +    +          ++    +GE+ A   L  F    V  Y + R+
Sbjct: 172 LTPPESWPEGEALDDWQLGAAMRRGGPVVEAHVRLGEETAQARLGAFMANGVDGYKDGRN 231

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           + A  G S LS  LS+G +SP QCW+             K+GA +W  EL+WREF  HLM
Sbjct: 232 LVAEDGCSGLSENLSLGEISPAQCWHAAMR----ARDAGKAGAETWAKELVWREFAYHLM 287

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
              P +     +    +   WNKD     + AWK+  TG P +DAA+R++   G MHNR 
Sbjct: 288 WHTPHLLEDN-WREEWKAFPWNKDERRREVIAWKRARTGIPFVDAALREMYVTGRMHNRA 346

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI AS+L K L+  W+IG ++F   L D D ASN  GWQW A +G D+ PYFR+FNP  
Sbjct: 347 RMIVASYLTKHLMCHWKIGLDWFEDCLTDWDPASNALGWQWTAGSGPDAAPYFRVFNPIT 406

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACH 468
           Q ++FDP   +IR W+ E    PT     Y  A P SW    D    YP P+V  +    
Sbjct: 407 QREKFDPDRAYIRRWIAEGEGTPTDTALSYFDAIPESWAMSPDDP--YPEPVVSAEDGRK 464

Query: 469 HTLNQYY 475
             L  Y 
Sbjct: 465 AALAAYE 471


>gi|114764326|ref|ZP_01443554.1| deoxyribodipyrimidine photolyase [Pelagibaca bermudensis HTCC2601]
 gi|114543274|gb|EAU46291.1| deoxyribodipyrimidine photolyase [Roseovarius sp. HTCC2601]
          Length = 473

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 152/487 (31%), Positives = 230/487 (47%), Gaps = 35/487 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  S  +VW+R DLR++D+  L+ A   S   VI VFI      +   + A     +   
Sbjct: 2   SDTSPIIVWIRRDLRLSDHATLHEA-GKSGRPVIPVFIRDHTVDQ---LGAAPKWRLGLG 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L    ++L++KG               E LD+   +     +++ R Y+   V RD  ++
Sbjct: 58  LGCFGEALAEKGSRLILRAGPAR----EVLDALIDETGAGAVWWQRAYDPASVERDTAVK 113

Query: 125 KRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             L+ R +  +SF   +L  P ++       YKVYTPF +A+    V   L +      +
Sbjct: 114 SALKDREIDARSFAGHLLFEPWTVETKQGGFYKVYTPFWRAVCDRDVPEPLPA----PSK 169

Query: 184 LTGPVTPSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           L  P +        D+            ++P   +GE+ A   L  F   K+  Y + R+
Sbjct: 170 LAAPESWPESDALDDWGLGDAMRRGAAVVEPYVQLGERAAQARLGAFTSGKIADYDKGRN 229

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           + A  G S LS  L++G +SP QCW+             K GA +W  EL+WREF  HL+
Sbjct: 230 LVAEDGCSTLSENLALGEISPAQCWHAAMR----AKDAGKEGAETWAKELVWREFAYHLL 285

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
              P +     +        WN+D     + AWK+  TG P +DAA+R++   G MHNR 
Sbjct: 286 WHTPHLAESN-WREEWAAFPWNEDERRKEVIAWKRARTGIPFVDAALREMYVTGRMHNRA 344

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI AS+L K L+  W+IG ++F   L+D D ASN  GWQW+A +G D+ PYFR+FNP  
Sbjct: 345 RMIVASYLTKHLMCHWKIGMDWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPIT 404

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACH 468
           Q ++FDP   ++  W+ E  + P +    Y  A P SW    D +  YP PIV  +    
Sbjct: 405 QREKFDPDKVYVDRWIAEGQSNPPKTALSYFDAIPESWAMTPDDA--YPEPIVSAEDGRK 462

Query: 469 HTLNQYY 475
             L+ Y 
Sbjct: 463 AALDAYQ 469


>gi|97048023|sp|P77967|CRYD_SYNY3 RecName: Full=Cryptochrome DASH
 gi|28374085|pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
           Cryptochrome
 gi|28374086|pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
           Cryptochrome
          Length = 489

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 138/483 (28%), Positives = 229/483 (47%), Gaps = 31/483 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIY 62
              LVW RNDLR+ D++ L+ A   S   + AV+   P Q+ Q           +S+F+ 
Sbjct: 6   PTVLVWFRNDLRLHDHEPLHRALK-SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQ 64

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  + +SL + G               + +     Q     ++Y+R+    E+  ++ 
Sbjct: 65  QSVQNLAESLQKVGNKLLVTTGLPE----QVIPQIAKQINAKTIYYHREVTQEELDVERN 120

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL------R 175
           L K+L    +  K +  S L  P  +      +  ++T FRK + +  +          +
Sbjct: 121 LVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQ 180

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK--EKVYYYVEQ 233
            LP P I+L     P       ++  +++   F  GE   L  L+ +    +++  Y E 
Sbjct: 181 LLPSPNIKLELTAPPPEFFPQINFDHRSV-LAFQGGETAGLARLQDYFWHGDRLKDYKET 239

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +S+ SP+L++G LSPR  +  +K    + +          + EL+WR+F+R
Sbjct: 240 RNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQERV--SNDSTHWLIFELLWRDFFR 297

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +   Y +    +  +   +   W +D    + W+ G TG+P++DA MR+LN  G+M NR
Sbjct: 298 FVAQKYGNKLFNRGGL-LNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNR 356

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASFL K+L +DWR G E+F S L+D D+ SN G W + A  GND+   FR FN  
Sbjct: 357 GRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDAR-DFRYFNIP 415

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466
            Q +++DPQGT++RHWLPEL N+P   IH P              L ++YP P V+  ++
Sbjct: 416 KQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRPCVNFHQS 475

Query: 467 CHH 469
              
Sbjct: 476 VEA 478


>gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana]
          Length = 543

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 135/508 (26%), Positives = 208/508 (40%), Gaps = 41/508 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA--RQS 58
           M+     SVH  W R  LR+ DN AL AA   +   V  V+I  P        S    + 
Sbjct: 1   MEGPAVSSVH--WFRKGLRLHDNPALLAALRGARC-VRCVYILDPWFAASSSSSGGVNRW 57

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  SL  +  SL + G      +        +       +  VT+L +    E     
Sbjct: 58  RFLLQSLEDLDSSLRKLGSRLFVGRG----QPADVFPRLFKEWGVTRLTFQYYSEPFGKE 113

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSL 177
           RD  + K  +   +    + S  L     L+  +++     P      Q +V + +L   
Sbjct: 114 RDAAIMKLAKEAGVEVIVESSHTLY---DLDKIIELNGNSPPLTYKRFQAIVSRMELPRR 170

Query: 178 PVPAI-----------RLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFC 223
           PVP+I             +       +P   +  F   +P   ++P GE  AL  L +  
Sbjct: 171 PVPSITRQQMEKCRAEIKSTHDDTYGVPSLEELGFPRDNPGAAVWPGGETEALARLDRHL 230

Query: 224 KEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           + K +    +R            + LSPYL  G LS R  + RL+E +  +  K      
Sbjct: 231 ERKAWVAHYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLRELYQKVK-KNSPPPL 289

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           S   +L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA 
Sbjct: 290 SLFGQLLWREFFYTAATNNPKFDQMEG-NPICVQIPWDKNPEALAKWTEGKTGFPWIDAI 348

Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           M QL   GW+H+  R   A FL + DL   W  G + F   LLD D + N G W W  S 
Sbjct: 349 MTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSC 407

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDL 452
                 +F  + P   G+R DP G ++R +LP L   P++YI+ P +  +      K  +
Sbjct: 408 SAFFQQFFHCYCPVGFGRRTDPSGDYVRRYLPVLKGYPSRYIYEPWNAPESVQKEAKCIV 467

Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++YP P+V+H +A    + +     +Q
Sbjct: 468 GVDYPKPVVNHAEASRLNIERMKQTYQQ 495


>gi|325676163|ref|ZP_08155844.1| deoxyribodipyrimidine photolyase [Rhodococcus equi ATCC 33707]
 gi|325553073|gb|EGD22754.1| deoxyribodipyrimidine photolyase [Rhodococcus equi ATCC 33707]
          Length = 457

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 147/475 (30%), Positives = 218/475 (45%), Gaps = 35/475 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A++  LVW R DLR+ D   L AA   +    + +F+              +  F+Y SL
Sbjct: 14  AVTQSLVWFRRDLRVGDLPTLSAAGERA----LGLFVLDDRLLG--PSGGPRRDFLYRSL 67

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + + L  + +V +        D +E +          ++  +  Y      RD  +  
Sbjct: 68  SALDEQLDGRLLVVR-------GDPVEMVPLVAKAIGAQEVHVSADYGPYGRERDAAVA- 119

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                V   +      + PG +       YKV+TP+ K  + +  +A   +       + 
Sbjct: 120 ---EHVDLVTTGSPYAVAPGRVTKDDGSPYKVFTPWFKRWLDHGWRAPASTGADTLDWID 176

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 +  R      +A  P    GE  AL     FC + +  Y  +RD P +  TS++
Sbjct: 177 PDDVDVSKARTAIPAPEASGPA--AGEGAALERWSAFCDDDLIRYDAERDRPDLDTTSRM 234

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S YL  G + PR           DL  K   GA  +  ++ WR+FY  ++   P     +
Sbjct: 235 SVYLKFGNIHPRTML-------ADLARKRSHGAEQYRRQVAWRDFYADILFQRPDSAR-R 286

Query: 306 PFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            +    + +  +       +  AW +G TGFPI+DA MRQL + GWMHNR+RMI ASFLV
Sbjct: 287 NYDAKFDAMRHDTGRDADAMFAAWCEGRTGFPIVDAGMRQLLSEGWMHNRVRMIVASFLV 346

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDL + W  G  +FM  L+DGDLASN  GWQW A +G D+ PYFR+FNPT QG++FDP G
Sbjct: 347 KDLHLPWWRGARFFMQHLVDGDLASNQHGWQWTAGSGTDASPYFRVFNPTGQGEKFDPTG 406

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            ++R W+PEL  V  + +H       K+     YP PIVDH +     L +Y A 
Sbjct: 407 DYVRRWVPELRGVRGKAVHT-----LKDARPQAYPDPIVDHAEERREALARYGAL 456


>gi|146303224|ref|YP_001190540.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
           5348]
 gi|145701474|gb|ABP94616.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
           5348]
          Length = 435

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 154/465 (33%), Positives = 223/465 (47%), Gaps = 47/465 (10%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQVQK 70
              R DLR+ DN  L  A    D +V+ VF+  P Q   +   SA    F+  SLL +  
Sbjct: 5   FVFRRDLRLDDNTCLLRALQECD-EVVPVFVLDPRQLGDNPYKSAFALGFMVDSLLDLDM 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  +       Q        E         +V  +++N  Y    + RD  + + +  R
Sbjct: 64  QLKHRSSRLHILQGYPEKVLPE--------LKVEAIYFNEDYTPFSLNRDNAIRETM--R 113

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
              KS +D +LL P        + Y V+T F     +  V+  +++     + L  P T 
Sbjct: 114 GRVKSCED-LLLTPKDFFVRKGKPYTVFTHFYNDARKLEVRKPMKNDMRNYLTLDLPGTE 172

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                        ++   P G Q  L  L +    +   Y   R+ P ++GT++LSPY+ 
Sbjct: 173 VLKLE--------VERGIPGGRQEGLKRLER---ARNLNYSM-RNFPGVEGTTKLSPYIK 220

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            GV+SPR+ +  + EE                 +L WR+FY  L  + P V  G  +   
Sbjct: 221 FGVVSPREVYWAVNEEIR--------------RQLYWRDFYTLLAYYNPHV-FGHSYKRE 265

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            + I W  +   L+AWKQG TG+PI+DA MR+LN  G+MHNR RMITASFLVK L VDWR
Sbjct: 266 YDCIPWKWNEAHLEAWKQGKTGYPIVDAGMRELNETGFMHNRTRMITASFLVKVLHVDWR 325

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           IGE YF ++L+D D + NNG WQW ASTG D    FR+FNP +Q ++FDP   +I+ W+P
Sbjct: 326 IGERYFATKLVDYDPSVNNGNWQWVASTGAD--YMFRVFNPWLQQRKFDPDAVYIKTWVP 383

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           EL ++P + IH  + +         YP PIVD+ +        Y 
Sbjct: 384 ELKDLPAEKIHEIYRFKVS-----GYPSPIVDYSEEVKKARKMYE 423


>gi|254465900|ref|ZP_05079311.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
 gi|206686808|gb|EDZ47290.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
          Length = 474

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 146/485 (30%), Positives = 236/485 (48%), Gaps = 26/485 (5%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++ +  + W+R DLR+ DN AL AA   S A V+ V+I      +   + A     +   
Sbjct: 2   SSRAPVIWWIRRDLRLCDNPALTAAAE-SGAPVLPVYILD---EQDEALGAAPKFRLGLG 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L    + L++ G      +      ++  L     +     + ++R Y+   +RRD  ++
Sbjct: 58  LDHFGQELAKAGSCLILRRGK----ALRVLQDLIEETGAGAVHWSRLYDPQAIRRDSEIK 113

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L+ + +  KS    +L  P ++   A  MYKVYTPF KA+    V + L +    A  
Sbjct: 114 QTLKEQGVAVKSHGGRLLFEPWTVETKAGGMYKVYTPFWKAVRSRDVDSLLPAPGKIAAP 173

Query: 184 LTGPVT----PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              P +       +          +     +GE  AL  L  F ++ V  Y  +RD PA 
Sbjct: 174 DNWPASEDLADWRMAAAMRRGADVVARYCRVGETAALERLETFLEDSVDAYKARRDYPAE 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS  L+ G +SP + W+    +    + +   GA  +L E++WREF  HLM   P
Sbjct: 234 DATSGLSENLAWGEISPHRMWH----QGSAAMERGSQGAEHFLKEIVWREFAYHLMYNSP 289

Query: 300 SVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +   + +    ++  W++  +  +QAW++G TG+  +DAAMR+L   G MHNR RMI A
Sbjct: 290 HILT-ESWREEWQEFPWSQKITPQVQAWQRGLTGYGFVDAAMRELYVTGKMHNRARMIVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K L+  W+IG ++F   L+D D ASN  GWQW A +G D+ P+FR+FNP+ Q ++F
Sbjct: 349 SFLTKHLMTHWKIGMDWFADTLVDWDPASNALGWQWVAGSGPDAAPFFRVFNPSGQLEKF 408

Query: 419 DPQGTFIRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           DP+G +   W+ E  + P +     +  AP SW     ++     P+V  +      L  
Sbjct: 409 DPEGAYTSRWIAEGQDTPPRTALDFFDAAPLSWDLSAGMAPA--EPVVSLQAGRDRALTA 466

Query: 474 YYAAK 478
           Y+ A+
Sbjct: 467 YHEAR 471


>gi|118364198|ref|XP_001015321.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
           thermophila]
 gi|89297088|gb|EAR95076.1| FAD binding domain of DNA photolyase family protein [Tetrahymena
           thermophila SB210]
          Length = 472

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 141/475 (29%), Positives = 220/475 (46%), Gaps = 50/475 (10%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIY 62
                V+L W R DLR+ DN  LY A   S   V+ +FI   +   +       +  FI+
Sbjct: 13  QKKQKVNLFWFRRDLRLFDNVGLYHALKES-IPVVPLFIFDKDILNELEDKKDCRVEFIH 71

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L Q+Q +L + G            ++     S   +  ++ +F NR YE    +RD+ 
Sbjct: 72  NYLSQMQDNLRKHGSTMVVKHS----NAESAFKSLMEEFDISCVFTNRDYEPYAKKRDQQ 127

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +++ L  + I  K F D V+     +       +KVYTPF K  I  L + D +S    +
Sbjct: 128 IKEILNSKGIGFKDFKDQVIFEAKEVHQDDGSAFKVYTPFSKKWISLLSEPDYQSYKSES 187

Query: 182 I--RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           +             P      FQ     FP         L +   E V  Y + RD P I
Sbjct: 188 LMNNYWKSQVEVPFPTLEQIGFQKTGIEFPP------SQLDE---ELVKNYDKTRDYPHI 238

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           + TS +S +L  G +S R+   +                  +L+EL WREF+  ++  +P
Sbjct: 239 K-TSLMSVHLRFGTVSIRELVRKAVLLNQK-----------YLDELCWREFFMMMIDQFP 286

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   + F     K+EW  +    +AW +G TG+P++DA MRQLN  G++ N+LRMI AS
Sbjct: 287 -LFATENFKKAYNKVEWRNNPEEFKAWCEGKTGYPLLDAGMRQLNKTGYLPNKLRMIAAS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K+LL+DWR GE YF  +L+D DLA+N GGWQW   +G D  PY R+ +P +Q K++D
Sbjct: 346 FLTKNLLIDWRWGERYFAQKLIDYDLAANVGGWQWVNGSGTDQAPYIRVLDPVMQQKKYD 405

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           P   +++ W+ + N                      YP  IV+++++    L+ +
Sbjct: 406 PDFKYVKTWVEDFNE-------------------DTYPKRIVNYEESRQRALDAF 441


>gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex]
          Length = 524

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 132/497 (26%), Positives = 200/497 (40%), Gaps = 32/497 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
             V + W R  LR+ DN AL  A      S  ++  VFI  P   +   +   +  F+  
Sbjct: 4   KPVVIHWFRKGLRLHDNPALLNALEKVGESHYELRPVFILDPWFVKNAKVGPNRWRFLVQ 63

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +  +L + G      + S      E       +  V KL +    E     RD+ +
Sbjct: 64  SLQDLDDNLKKIGSRLFILKGSP----TETFKKVFKEWNVKKLTFEVDIEPYAKTRDEEI 119

Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +K   H  V   +     +     +      +    Y  F+  + +        + P   
Sbjct: 120 KKLADHHSVTVVAKVSHTIYDLEKVFKANGNKAPLTYVKFQSVVAKFGTPEKALNAPGKL 179

Query: 182 IRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
            +    +  S+           +D       ++  GE  AL  + K+  ++ +   + + 
Sbjct: 180 PKQCQTLLLSDKYNVPLLEEMQVDLTGLGKELYRGGETEALARMEKYMSQQDWVCKFSKP 239

Query: 234 RDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
              P      T+ LSPYL  G LSPR  ++RL E       K  S   S   +++WREFY
Sbjct: 240 DTSPNSIEPSTTVLSPYLKFGCLSPRLMYHRLHEIIDGR--KHTSPPTSLTGQMLWREFY 297

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSH--LLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
               A+ P+        P  ++I W  D       AWK G TG+P IDA M QL T GW+
Sbjct: 298 YTCGAYTPNFNRM-VGNPVCKQIPWKVDPEDEHFVAWKNGRTGYPFIDAIMIQLRTEGWI 356

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL V W +G++ F   LLD D A N G W W  S       YFR+
Sbjct: 357 HHLARHAVACFLTRGDLWVSWELGQQVFEELLLDADWALNAGNWMW-LSASAFFHSYFRV 415

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462
           ++P   GK+ D  G +I+ +LP L   PT+YI+ P              +  +YP  IVD
Sbjct: 416 YSPVAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPLSVQQTAGCIIGKDYPKRIVD 475

Query: 463 HKKACHHTLNQYYAAKK 479
           H       L +   A +
Sbjct: 476 HDVVMKENLAKMKKAYQ 492


>gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio]
 gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio]
          Length = 519

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 127/494 (25%), Positives = 197/494 (39%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA  +    +  +F+  P   +   I   +  F+  +L  + 
Sbjct: 5   TIHWFRKGLRLHDNPALIAALKDC-RHIYPLFLLDPWFPKNTRIGINRWRFLIEALKDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        + S      E L     Q ++T+L +    E     RDK + K  + 
Sbjct: 64  SSLKKLNSRLFVVRGSP----TEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMKLAKE 119

Query: 130 -RVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLP-------VP 180
             V         L     I++ +  +    Y   +  +            P       V 
Sbjct: 120 YGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAPTNEDMRGVS 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVY--YYVEQRD 235
                       IP   D           +FP GEQ AL  L +  +   +   + + + 
Sbjct: 180 TPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHMERTNWVCKFEKPKT 239

Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P   I  T+ LSPY+  G LS R  W RL + +            S   +L+WREF+  
Sbjct: 240 SPNSLIPSTTVLSPYVRFGCLSARTFWWRLADVYRGKT--HSDPPVSLHGQLLWREFFYT 297

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+    +       +++W+ +   L AW++  TGFP ID  M QL   GW+H+  
Sbjct: 298 TAVGIPNFNKMEG-NSACVQVDWDNNPEHLAAWREARTGFPFIDTIMTQLRQEGWIHHLA 356

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G++ F   LLD D + N G WQW  S       YFR+++P 
Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQW-LSASTFFHQYFRVYSPI 415

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
             GK+ D  G +I+ +LP L   PT+YI+ P              +  +YP PIVDH+  
Sbjct: 416 AFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVGKDYPRPIVDHEVV 475

Query: 467 CHHTLNQYYAAKKQ 480
               + +  AA  +
Sbjct: 476 HKKNILRMKAAYAK 489


>gi|254430204|ref|ZP_05043907.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
 gi|197624657|gb|EDY37216.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
          Length = 504

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 174/515 (33%), Positives = 233/515 (45%), Gaps = 47/515 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A T     L W R DLR+ DN  L AA   + A V  VF+  P       ++  +  F
Sbjct: 1   MAAETGAERWLFWHRRDLRLADNLGLAAAAAATPA-VTGVFVLDPGILEAADLAPARLWF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL ++ +     G      +     D    L       R   L +NR  E     RD
Sbjct: 60  LAESLRELAERWRAAGSRLLVLRG----DPAVVLPQLAAALRAPVLAWNRDVEPYGRERD 115

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV--------- 170
           + +   LQ          D +L+ P ++       Y+VY PF +     +          
Sbjct: 116 RRVAAALQAEGRRVLVDWDQLLIAPEALRTGQGDPYRVYGPFWRNWRGQVAARADLGSAA 175

Query: 171 ---------QADLRSLPVPAIR-----------LTGPVTPSNIPRFFDYPFQAIDPMFPI 210
                       LR L  P ++           L  P   + +     +P   + P  P 
Sbjct: 176 AGGLEPVAAPTGLRDLGEPELQALHRSTASPLPLVEPDAATGLHLPHSFPGADLCPCRP- 234

Query: 211 GEQNALHILRKFCKEKVYY-----YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           GE  A   L+ FC           Y + R++P   GTS LS  L  G LSPRQ W   ++
Sbjct: 235 GEAAAQEQLQAFCDGGCDGGPLLAYEQGRNLPGEAGTSGLSAALKFGTLSPRQAWAAAQQ 294

Query: 266 EFVDLL-IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
                   + +     W  EL WREFY+  +  +P +  G P+ P  ++  W  D    +
Sbjct: 295 ARALARSTEAEQSITVWEQELAWREFYQQALFHFPELAEG-PYRPQWKRFPWENDEGRFE 353

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           AW+QG TG PI+DAAMRQLN  GWMHNR RMI ASFLVKDL+ DWR GE  FM+QL+DGD
Sbjct: 354 AWRQGLTGMPIVDAAMRQLNESGWMHNRCRMIVASFLVKDLICDWRWGERAFMAQLVDGD 413

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
           LA+NNGGWQW+AS+G D  P  RIFNP  Q  +FDP+ ++IR WLPEL +V T  +    
Sbjct: 414 LAANNGGWQWSASSGMDPKP-LRIFNPATQATKFDPEASYIRTWLPELRHVATADL---I 469

Query: 445 SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           S          YP PIV+HK         Y A  +
Sbjct: 470 SGAIPPLERRGYPEPIVEHKIQQARFKALYAALPR 504


>gi|218191029|gb|EEC73456.1| hypothetical protein OsI_07758 [Oryza sativa Indica Group]
 gi|222623102|gb|EEE57234.1| hypothetical protein OsJ_07222 [Oryza sativa Japonica Group]
          Length = 719

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 142/508 (27%), Positives = 229/508 (45%), Gaps = 33/508 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    +VW R DLR+ DN A  AA   +  +V+ V++  PE+   +        ++ 
Sbjct: 13  AGEAGVRTVVWFRRDLRVEDNPA-LAAAARAAGEVVPVYVWAPEEDGPYYPGRVSRWWLS 71

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY---------E 113
            SL  +  SL + G      + S   D++  L         T LF+N  Y         +
Sbjct: 72  QSLKHLDASLRRLGASRLVTRRSA--DAVVALIELVRSIGATHLFFNHLYGSIDPEFQID 129

Query: 114 INEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              + RD  ++  L    +  +SF+  +L  P  +++     + ++ PF    +     A
Sbjct: 130 PLSLVRDHRVKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPA 189

Query: 173 DLRSLP--VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226
                P  +    L     PS+   F D   +  + +    +  G QNA   L  F    
Sbjct: 190 APLLPPKRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGP 249

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWL 282
           +  Y   R       TS LSPYL  G LS R+ +++++ +      +           +L
Sbjct: 250 LMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFL 309

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             +  RE+ R+L   +P   + KP +       W  D    + W+QG TG+P++DA MR+
Sbjct: 310 RSIGLREYSRYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRE 368

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D 
Sbjct: 369 LWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDG 428

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456
               RI NP ++G +FDP G ++R WLPEL  +PT++IH P    +        +L  NY
Sbjct: 429 RELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNY 488

Query: 457 PLPIVDHKKACHH---TLNQYYAAKKQS 481
           PLPIV+   A       L++ +  +  S
Sbjct: 489 PLPIVELDAAKTRLQDALSEMWELEAAS 516


>gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior]
          Length = 671

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 119/494 (24%), Positives = 184/494 (37%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L      +      VF+  P       +   +  F+   L  + 
Sbjct: 25  TVHWFRKGLRLHDNPSLKEGLAGASTF-RCVFVLDPWFAGSTNVGINKWRFLLQCLEDLD 83

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        + L     +   T L +    E     RD  +    + 
Sbjct: 84  CSLRKLNSRLFVIRG----QPADALPKLFKEWGTTDLTFEEDPEPFGRVRDHNISALCKE 139

Query: 130 RVI-CKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             I         L     I+  ++ +    Y  F+  +               A   +  
Sbjct: 140 LGISVVQRVSHTLYRLDEIIERNSGKPPLTYHQFQNVVAGMDPPEPPAPTVTAACIGSAY 199

Query: 188 VTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
               +            +  F     + P++  GE  AL  L +  + K +     R   
Sbjct: 200 TPLKDDHDDHYGVPTLEELGFDTESLLPPVWVGGESEALARLERHLERKAWVASFGRPKM 259

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             Q      + LSPYL  G LS R  + +L + +    IK      S   +L+WREF+  
Sbjct: 260 TPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAVPPLSLHGQLLWREFFYC 317

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+    +   P   +I W+K+   L  W  G TGFP IDA M QL   GW+H+  
Sbjct: 318 AATKNPNFDKMQG-NPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLA 376

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 377 RHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 435

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKA 466
             G++ DP G +IR +LP L N PT+YIH P           K  +   Y LP+V+H K+
Sbjct: 436 RFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKCIIGKEYSLPMVNHNKS 495

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 496 SRINIERMKQVYQQ 509


>gi|289617143|emb|CBI56211.1| unnamed protein product [Sordaria macrospora]
          Length = 554

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 157/466 (33%), Positives = 236/466 (50%), Gaps = 59/466 (12%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W + DLR+ DN++L+ A      +   +I +++ +PE    H  +  +  F+  +L  
Sbjct: 112 VHWFKMDLRLHDNRSLWLASQKAQEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLRTLEI 171

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ L   GI                              +   YE++E+RR+  L K  
Sbjct: 172 LKRDLEALGIPL----------------------------WIETYEVDELRREARLVKIF 203

Query: 128 QHR---VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 ++ +   D+ ++ PG++ + +   Y VY+P+ +A I+++ +             
Sbjct: 204 AEGDEKMVAEVVHDTCVVMPGALKSGSGGQYAVYSPWYRAWIKHVEENPDCLEIYEKPLP 263

Query: 185 TGPVTPSNIPRFFDYPFQAI----------------DPMFPIGEQNALHILRKFCKEKVY 228
             P T S     F  P                      ++P GE  AL  L KFC E + 
Sbjct: 264 NPPSTKSKYAHLFTCPIPPAPENKNLPDNDETKARYRALWPAGEHEALKRLHKFCDENIG 323

Query: 229 YYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFV-DLLIKPKSGAFSWLNELI 286
            Y E+RDIP+++ GTS+LS + + G LS R      ++      L     G   W++E+ 
Sbjct: 324 KYAERRDIPSVEGGTSKLSVHFASGTLSARTAIRAARDRNNTKRLNGGNEGIQRWISEVA 383

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREFYRH++  +P VCM KPF P    I W+ +     AW  G TG+PIIDAAMRQ+ + 
Sbjct: 384 WREFYRHVLVGWPYVCMNKPFKPLYSNITWSYNPTHFHAWTSGQTGYPIIDAAMRQVLST 443

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+M NRLRMI ASFL KDLL+DWR+GE YFM  L+DGD ASNNGGW +AAS G D  PYF
Sbjct: 444 GFMPNRLRMIVASFLAKDLLIDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYF 503

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVP-------TQYIHAPHS 445
           R+FNP +Q ++FD  G +IR W+ EL ++          +IH P+ 
Sbjct: 504 RVFNPLLQSEKFDEGGEYIRRWVEELRDLEGGKLGGKGGWIHDPYG 549


>gi|148533563|gb|ABQ84983.1| antennal cryptochrome 2 [Spodoptera littoralis]
          Length = 625

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 130/493 (26%), Positives = 196/493 (39%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL     ++ A    VFI  P       +   +  F+   L  +  
Sbjct: 40  VHWFRKGLRLHDNPALKEGLLDA-ATFRCVFIIDPWFASSSNVGINKWRFLLQCLEDLDS 98

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
           SL +        +        + L     +   T L +    E     RD  +  + +  
Sbjct: 99  SLRKLNSRLFVVRG----QPADALPKLFREWGTTALTFEEDPEPYGRVRDHNIMSKCREV 154

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +   S     L     I+        +     +ALI ++        P+ A  L G  T
Sbjct: 155 GITVTSRVSHTLYKLDQIIERNGGKAPLTYHQFQALIASMPPPPPAEAPISAQMLNGATT 214

Query: 190 PS--------NIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P          +P   +  F+      P++  GE  AL  L +  + K +     R    
Sbjct: 215 PLTDDHDDRFGVPTLEELGFETEGLKPPVWIGGESEALARLERHLERKAWVASFGRPKMT 274

Query: 239 IQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R  + +L E +    +K      S   +++WREF+   
Sbjct: 275 PQSLLASQTGLSPYLRFGCLSTRLFYYQLTELYK--RVKRVRPPLSLHGQILWREFFYCA 332

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +I W K+   L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 333 ATRNPNFDRMEG-NPICVQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREEGWIHHLAR 391

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P  
Sbjct: 392 HAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVR 450

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G FIR ++P L N+PT+YIH P    +      +  +  +YPLP+VDH KA 
Sbjct: 451 FGRKTDPNGDFIRRYIPALKNMPTRYIHEPWVAPESVQQSARCIIGRDYPLPMVDHSKAS 510

Query: 468 HHTLNQYYAAKKQ 480
              + +      Q
Sbjct: 511 QVNIERIKQVYAQ 523


>gi|255720052|ref|XP_002556306.1| KLTH0H09922p [Lachancea thermotolerans]
 gi|238942272|emb|CAR30444.1| KLTH0H09922p [Lachancea thermotolerans]
          Length = 574

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 160/512 (31%), Positives = 247/512 (48%), Gaps = 38/512 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHG 52
           + A   +S  + W R DLR+ DN AL  A            DA++IA++      WR H 
Sbjct: 65  LPAKADISAVVHWFRTDLRVRDNAALSNAIKLLREIRGQKKDAQLIALYTINEHDWRAHL 124

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCL--QQRV 103
            S  +  F   +L  +++ L Q  +     +        S   + ++W+   C+   Q  
Sbjct: 125 DSGWKLTFALNALESLREMLKQMNVALVVRKFESKKPLLSRSSEFVDWVKEQCVSLAQGN 184

Query: 104 TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
             +  N QYE +E+ RD  L  +   +   + + D  ++ PGS+       Y V+TP+ K
Sbjct: 185 VLVTANAQYETDELYRDLKLFDKQDEQFRFQVYHDQCIVQPGSLTTGKGSQYTVFTPWYK 244

Query: 164 ALIQNLVQAD--LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-----------PI 210
             ++ L        ++ + A+     V  S + +F    ++  D              P 
Sbjct: 245 RWVEYLKSHKQGKEAIKIHAVDQESKVNES-LAKFESEAYELSDEFLAYLPCDKLEVPPA 303

Query: 211 GEQNALHILRKFCKEKVYY-YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            E +A  +L++F      + Y E++D  ++  TS LS Y++ G++S R+  NR   E  D
Sbjct: 304 TEADAHELLQEFISSGNAHKYNEKKDTLSLDSTSHLSCYITSGLISTREVVNRAFHENGD 363

Query: 270 LL----IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
            L    IK  +   +++ E+ WR+FY+H+M  +P + M       T  I+W  D      
Sbjct: 364 SLMRRDIKQNNSVENFIKEVAWRDFYKHVMCNWPYMSMEIAIKFETMDIKWENDEEKFSK 423

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W  G TG P++DA MR+L   G++ NR RMI ASFL K+LLVDWR GE +F   LLD DL
Sbjct: 424 WCLGETGLPVVDAIMRKLLYTGYISNRCRMIVASFLSKNLLVDWRWGERWFRKHLLDADL 483

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           ASN GGW + +STG D+ PYFRIFN  +Q +R+DP G F++ W+PEL +     I     
Sbjct: 484 ASNAGGWGFCSSTGIDAQPYFRIFNMKLQCERYDPDGKFVKMWVPELKDADNVRIIREGR 543

Query: 446 WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
              + D    YP PIVD K +    L  +  A
Sbjct: 544 --SEKDAVDGYPSPIVDLKDSRERALEAFREA 573


>gi|222622395|gb|EEE56527.1| hypothetical protein OsJ_05816 [Oryza sativa Japonica Group]
          Length = 551

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 132/500 (26%), Positives = 210/500 (42%), Gaps = 31/500 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSD-AKVIAVFIATPEQWRQHGISA---------RQSHFI 61
           VW R  LR+ DN AL AA      A++  VF+  P   R    +           +  F+
Sbjct: 17  VWFRKGLRVHDNPALDAARRGGAVARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFL 76

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L + G      +  +  D    + +      + KL +    E   + RDK
Sbjct: 77  LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136

Query: 122 LLEK-RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            +        +   S     L  P  I+  +  +    Y  F     +           +
Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIMEEYSEL 196

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
           P +  TG      +PR  +  +  I      +F  GE  AL  +R+   +K +   + + 
Sbjct: 197 PPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEKP 256

Query: 234 RDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           +  P+      T+ LSPYL  G LS R  ++ +++ +     K  +   S   +L+WR+F
Sbjct: 257 KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTK-KHTNPPVSLTGQLLWRDF 315

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  +    P+    K      ++I W ++  L  AW+ G TG+P IDA M QL   GWMH
Sbjct: 316 FYTVAFGTPNFDQMKG-NKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMH 374

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G + F   L+D D A NNG W W  S  +    Y RI+
Sbjct: 375 HLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFFYQYHRIY 433

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           +PT  GK++DP G +IRH++P L ++P +YI+ P +            +  +YP P+VDH
Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493

Query: 464 KKACHHTLNQYYAAKKQSLL 483
             A          A   + L
Sbjct: 494 AIASKECKKMMGEAYASNRL 513


>gi|172170|gb|AAA34875.1| photolyase (EC 4.1.99.3) [Saccharomyces cerevisiae]
          Length = 565

 Score =  352 bits (903), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 160/504 (31%), Positives = 249/504 (49%), Gaps = 46/504 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQS 58
           +S  + W RNDLR+ DN  LY +          N+ AK+ AV++   + WR H  S  + 
Sbjct: 74  VSTAMHWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKL 133

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQR---VTKLFY 108
            FI  +L  +Q+SL++  I     +        SN  + +E+    C+       T +  
Sbjct: 134 MFIMGALKNLQQSLAELHIPLLLWEFHTPKSSLSNTKEFVEFFKEKCMNVSSGTGTIITA 193

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           N +Y+ +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K  +  
Sbjct: 194 NIEYQTSELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLY 253

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALH 217
           +      +  +  + +  P+  +       + +   D               + E+ AL 
Sbjct: 254 VNNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALS 313

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLIK 273
            L+ F   K   Y  ++D+  + GTS LS Y++ G +  R    Q +    E+ +   +K
Sbjct: 314 RLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRIRTRLIVNQAFQSCNEQIMSKALK 373

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
             S   +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  G TG 
Sbjct: 374 DNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGI 433

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           PI+DA MR+L   G+++NR RMITASFL K+LL+DWR G+ +FM  L+DGD +SN GGW 
Sbjct: 434 PIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGKRWFMKHLIDGDSSSNVGGWG 493

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453
           + +STG D+ PYFR+FN  IQ K++DPQ  F++ W+PEL                +N   
Sbjct: 494 FCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL-------------ISSENKRP 540

Query: 454 LNYPLPIVDHKKACHHTLNQYYAA 477
            NYP P+VD K +    L  Y  A
Sbjct: 541 ENYPKPLVDLKHSRERALKVYKDA 564


>gi|183981685|ref|YP_001849976.1| DNA photolyase, PhrI [Mycobacterium marinum M]
 gi|183175011|gb|ACC40121.1| DNA photolyase, PhrI [Mycobacterium marinum M]
          Length = 447

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 152/474 (32%), Positives = 230/474 (48%), Gaps = 31/474 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+W R DLR+ D+ AL AA  + +  V+A F+  P      G+  R+  F+  SL 
Sbjct: 1   MTRALLWFRRDLRLGDHPALAAAADSEE--VLACFVVDPRLEASSGL--RRLQFLGDSLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+  +L  + +V +           + ++        + +  +  +     RRD+ +   
Sbjct: 57  QLNDALQGRLLVTRGRPEQRIPLIAKAIE-------ASSVHVSGDFAPFGRRRDERVAAG 109

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  RV   +     L+ PG ++ +    Y+V+TPF +       +A   + P  A  L  
Sbjct: 110 LG-RVPLVATGSPYLVSPGRVVKNDGSPYQVFTPFFRKWQDARWRAPAGTGPGSACWLDP 168

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             T        + P    +     GE  A+     F   K+  Y   RD P  +GTS++S
Sbjct: 169 AQTDIEQC---EIPDPGTELDLAAGEAAAIREWTAFRTAKLDRYEHDRDRPDFEGTSRMS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR          V  +    +GA S+L EL +R+FY  ++  +P+      
Sbjct: 226 AHLKFGTIHPRTM--------VAGMDLTGTGARSYLRELAFRDFYGAVLHHWPASAWHN- 276

Query: 307 FIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +    + I  + D+    L + WK G TG+P++DA MRQL   G+MHNR+RMI ASFLVK
Sbjct: 277 WNSNFDGIVTDTDADARRLFECWKAGETGYPLVDAGMRQLRETGFMHNRVRMIAASFLVK 336

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W+ G  +F+ QL DGDLASN  GWQW+A  G D+ PYFRIFNP+ Q ++FDP G 
Sbjct: 337 DLHLPWQWGAAWFLDQLTDGDLASNQHGWQWSAGCGTDAAPYFRIFNPSAQAEKFDPAGD 396

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +IR W+PEL +V    +H              YP PIVDH       L +Y+  
Sbjct: 397 YIRRWVPELRDVDN--VHRIQRRGGPC--PSTYPAPIVDHGTERAEALRRYHDI 446


>gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 625

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 126/525 (24%), Positives = 211/525 (40%), Gaps = 58/525 (11%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH------ 59
           M +H + W R  LR+ DN +L  +   +D+ V  V+I  P       +   +        
Sbjct: 1   MVIHTIHWFRKGLRLHDNPSLKDSLLGADS-VRCVYILDPWFAGSSNVGINRWRICLRSP 59

Query: 60  -----------FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC-------LQQ 101
                      F+  SL  +  SL +        +    D       ++         + 
Sbjct: 60  LTVSQEQEALRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDVFPRLFKAHPTVAVYVPQEW 119

Query: 102 RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF 161
            +++L Y    E     RD  ++K      +  +   S  L     L+  +++    +P 
Sbjct: 120 NISRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVCISHTLY---DLDKIIELNGGQSPL 176

Query: 162 RKALIQNLV-QADLRSLPVPAI------RLTGPVTPSNIPR-----FFDYPFQA---IDP 206
                Q L+ + D   +P  +I      + T P++  +  +       +  F        
Sbjct: 177 TYKRFQTLISRMDPVEVPAESITAEIMGKCTTPLSDDHDDKYGVPSLEELGFDTEVLSSA 236

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNR 262
           ++P GE  AL  L +  + K +    +R            + LSPYL  G LS R  + +
Sbjct: 237 VWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFK 296

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           L + +  +  K  S   S   +L+WREF+       P     +   P   +I W+++   
Sbjct: 297 LTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNPCFDKMEN-NPICVQIPWDRNPEA 354

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLL 381
           L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LL
Sbjct: 355 LAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELLL 414

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D + N G W W  S  +    +F  + P   G+R DP G +IR +LP L   P +YI+
Sbjct: 415 DADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKYIY 473

Query: 442 APHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            P +  +      K  + ++YP P+V+H +A    + +     +Q
Sbjct: 474 DPWNAPESVQKAAKCLIGVHYPKPMVNHAEASRLNIERMKQIYQQ 518


>gi|293337104|ref|NP_001170477.1| LOC100384475 [Zea mays]
 gi|226452137|gb|ACO59248.1| cryptochrome 1 [Zea mays]
          Length = 699

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 140/497 (28%), Positives = 228/497 (45%), Gaps = 22/497 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A    +  +VW R DLR+ DN A  AA   +  +V+  ++  PE+   +        ++ 
Sbjct: 11  AGEPGARAVVWFRRDLRVEDNPA-LAAAPRAAGEVVPAYVWAPEEDGPYYPGRVSRWWLS 69

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  SL + G      + S+  D++  L         T LF+N  Y+   + RD  
Sbjct: 70  QSLKHLDASLRRLGACRLVTRRSS--DAVVALIDLVRSTGATHLFFNHLYDPLSLVRDHR 127

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           ++++L    I  +SF+  +L  P  +L+   + + ++ PF    +     A     P   
Sbjct: 128 VKEQLAAEGIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPDPAAPLLPPKRI 187

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                   P +   F D   +  + +    +  G QNA   L  F    +  Y   R   
Sbjct: 188 NSGDLSRCPWDELVFEDESERGSNALLARAWSPGWQNADKALTAFLNGPLMDYSVNRKKA 247

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRH 293
               TS LSPYL  G LS R+ +++++ +      D     +     +L  +  RE+ R+
Sbjct: 248 DSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLRSIGLREYSRY 307

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 308 LTFNHP-CSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWVHDRI 366

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP  
Sbjct: 367 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQF 426

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKAC 467
           +G +FDP G ++R WLPEL  +PT++IH P    +        +L  NYPLPIV+   A 
Sbjct: 427 EGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAAK 486

Query: 468 ---HHTLNQYYAAKKQS 481
                 L++ +  +  S
Sbjct: 487 GRLQAALSEMWQLEAAS 503


>gi|118464028|ref|YP_883059.1| Phr protein [Mycobacterium avium 104]
 gi|118165315|gb|ABK66212.1| Phr protein [Mycobacterium avium 104]
          Length = 442

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 142/472 (30%), Positives = 215/472 (45%), Gaps = 34/472 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+W R DLR+ D+ AL AA  + +  V+A F+  P    Q     R+  F+  SL  +
Sbjct: 2   PALLWFRRDLRLHDHPALSAAADSDE--VLACFVLDPRL--QRSSGPRRLQFLGDSLRVL 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L  + +V +        +  + +         + +  +  +     RRD  +   L 
Sbjct: 58  RDELDGRLLVTRGRPDIRIPEIAKAI-------GASSVHVSEDFTPFGKRRDARVRAALA 110

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   +     L+PPG +       Y+V+TPF +       +   ++    A  L    
Sbjct: 111 S-VPLVATGSPYLVPPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPAKTGAASARWLDPAR 169

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                    + P          GE  A +  + F    +  Y + R  P I+GTS++S +
Sbjct: 170 LGITAC---EIPDPGATLDLAAGEAAARNQWKSFVDNGLANYADDRHRPDIEGTSRMSAH 226

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G + PR     L            +GA ++L EL +R+FY  ++   P+    + + 
Sbjct: 227 LKFGTIHPRTLVADL--------DLRTAGARAYLRELAFRDFYADVLHHRPASAW-RNWN 277

Query: 309 PWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              + I  +         +AWK G TGFP +DA MRQL   G+MHNR+RM  ASFLVKDL
Sbjct: 278 SAFDAIRTDTGDEAGRRFEAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASFLVKDL 337

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W+ G  +F+ QL+DGDLA+N  GWQW A  G D+ PYFR+FNP  QG++FDP G +I
Sbjct: 338 HLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDPSGDYI 397

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           R W+PEL      +       L   +    YP PIVDH       L +Y + 
Sbjct: 398 RRWVPELRCADDPH-------LRTGERPPGYPAPIVDHATERAEALRRYRSM 442


>gi|118617507|ref|YP_905839.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99]
 gi|118569617|gb|ABL04368.1| DNA photolyase, PhrI [Mycobacterium ulcerans Agy99]
          Length = 447

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 152/474 (32%), Positives = 229/474 (48%), Gaps = 31/474 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+W R DLR+ D+ AL AA  + +  V+A F+  P      G+  R+  F+  SL 
Sbjct: 1   MTRALLWFRRDLRLGDHPALAAAADSEE--VLACFVVDPRLEASSGL--RRLQFLGDSLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q+  +L  + +V +           + ++        + +     +     RRD+ +   
Sbjct: 57  QLNDALQGRLLVTRGRPEQRIPLIAKAIE-------ASSVHVTGDFAPFGRRRDERVAAG 109

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  RV   +     L+ PG ++ +    Y+V+TPF +       +A   + P  A  L  
Sbjct: 110 LG-RVPLVATGSPYLVSPGRVVKNDGSPYQVFTPFFRKWQDARWRAPADTGPGSACWLDP 168

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             T        + P    +     GE  A+     F   K+  Y   RD P  +GTS++S
Sbjct: 169 AQTDIEQC---EIPDPGTELDLAAGEAAAIREWTAFRTAKLDRYEHDRDRPDFEGTSRMS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            YL  G + PR          V  +    +GA S+L EL +R+FY  ++  +P+      
Sbjct: 226 AYLKFGTIHPRTM--------VAGMDLTGTGARSYLRELAFRDFYGAVLHHWPASAWHN- 276

Query: 307 FIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +    + I  + D++     + WK G TG+P++DA MRQL   G+MHNR+RMI ASFLVK
Sbjct: 277 WNSNFDGIVTDTDANARRVFECWKAGETGYPLVDAGMRQLRETGFMHNRVRMIAASFLVK 336

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W+ G  +F+ QL DGDLASN  GWQW+A  G D+ PYFRIFNP+ Q ++FDP G 
Sbjct: 337 DLHLPWQWGAAWFLDQLTDGDLASNQHGWQWSAGCGTDAAPYFRIFNPSAQAEKFDPAGD 396

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +IR W+PEL +V    +H              YP PIVDH       L +Y+  
Sbjct: 397 YIRRWVPELRDVDN--VHRIQRRGGPC--PSTYPAPIVDHGTERAEALRRYHDI 446


>gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis]
 gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis]
          Length = 537

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 143/508 (28%), Positives = 217/508 (42%), Gaps = 41/508 (8%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISAR 56
           + S  L+W R  LR+ DN AL  A   S   V  VF+  P                    
Sbjct: 4   SGSSSLMWFRKGLRVHDNPALDYASKGSK-FVYPVFVIDPHYMEPDPNAFSPGSSRAGIN 62

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F+  SL+ +  SL + G      +       I  L  +     V KL +    +   
Sbjct: 63  RIRFLLESLVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIW----DVEKLCFEYDTDSYY 118

Query: 117 VRRDKLLEK-RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADL 174
              D  +++     R+   S     L  P  I+  +  +    Y  F K   Q    +  
Sbjct: 119 QALDAKVKEYASSARIEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFLKVAGQPSWASSP 178

Query: 175 RSLPV---PAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFC--KE 225
               +   P +   G    S +P   +  +  ++      F  GE  AL  LR+    KE
Sbjct: 179 LPTTISSLPPVGDVGSCEISEVPTLEELGYGDVEQDEWAPFRGGESEALKRLREKITNKE 238

Query: 226 KVYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            V  + + +  P+      T+ LSPYL  G LS R  +  L++ + ++  K  S   S L
Sbjct: 239 WVANFEKPKGDPSAFMKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNVG-KHTSPPVSLL 297

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +L+WR+F+  +    P+    K      ++I WN+D  LL AW++  TG+P IDA M Q
Sbjct: 298 GQLLWRDFFYTVAFGTPNFDQMKENR-ICKQIPWNEDDELLSAWREARTGYPWIDAIMVQ 356

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GWMH+  R   A FL + DL V W  G   F   L+D D A NNG W W  S  + 
Sbjct: 357 LRKWGWMHHLARHCVACFLTRGDLFVHWEKGRNVFERLLIDSDWAINNGNWLW-LSCSSF 415

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455
              Y RI++P   GK++DP G +I+H+LP L ++P +YI+ P +         K  +  +
Sbjct: 416 FYQYNRIYSPISFGKKYDPNGNYIKHFLPVLKDMPKEYIYEPWTAPLSVQTKAKCIIGRD 475

Query: 456 YPLPIVDHKKA---CHHTLNQYYAAKKQ 480
           YP P+V H  A   C   L + YA  ++
Sbjct: 476 YPKPVVAHDSASKECKKKLAESYALNQK 503


>gi|323358558|ref|YP_004224954.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037]
 gi|323274929|dbj|BAJ75074.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037]
          Length = 456

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 142/478 (29%), Positives = 224/478 (46%), Gaps = 34/478 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R+DLR+TDN AL AA    +  ++A+++   E      I      +++ SL  
Sbjct: 3   SPSVVWFRDDLRLTDNPALRAALDR-EEPIVALYLLDEESDGVRSIGGAARWWLHGSLAS 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L ++G      +    +       +   +     +F+NR+Y   E   D  ++++L
Sbjct: 62  LGERLEERGGRLVLRRGRAAEVV----PAVVEEVGAGAVFWNRRYGGVEREIDAGIKEKL 117

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   V   SF  ++L  P ++   A + Y VY+PF +A+ +                  G
Sbjct: 118 RGDGVTVASFAANLLYEPWTVRTQADKPYGVYSPFARAVQKLPAPRPPMPEARKVPGFDG 177

Query: 187 PVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            V   ++  +   P +      +   +  GE      L++F  + +  Y + RD  A   
Sbjct: 178 HVDGDDLAAWDLLPTKPDWAGGLRETWEPGEPAGKARLKEFLDDDLGDYSKYRDEFAGGA 237

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSP L  G LSP + W+           +    A  +L+EL+WREF  H+    P +
Sbjct: 238 TSNLSPRLRWGELSPYEVWHETIAH--RGSGEHAQSASGFLSELVWREFAWHVTYHSPDI 295

Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                +    +   W + +   L+ W+QG TG  ++DA MRQL   G MHNR+RM+TASF
Sbjct: 296 ATVN-WRRNFDAFPWPRLNRAHLETWQQGKTGVAVVDAGMRQLWHTGVMHNRVRMVTASF 354

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L+K+LL+DWR GE++F   L+D D ASN   WQW A +G D+ PYFR+FNP  Q K+FDP
Sbjct: 355 LIKNLLIDWRHGEQWFWDCLVDADAASNPFNWQWVAGSGADAAPYFRVFNPDTQRKKFDP 414

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
              ++R W PE                    L  N P P+VD  +     L+ Y   +
Sbjct: 415 HDAYVREWAPEY-------------------LGENPPEPMVDLGETRKRALDAYAEVR 453


>gi|113954039|ref|YP_729488.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
 gi|113881390|gb|ABI46348.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9311]
          Length = 492

 Score =  350 bits (899), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 156/500 (31%), Positives = 226/500 (45%), Gaps = 37/500 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH----GISARQSHFI 61
             S  L W R DLR+ DN  L AA       V  V++  P   +       ++  +  F+
Sbjct: 2   TASRVLFWHRRDLRLADNLGLQAA-EAISPAVTGVYVLDPALIQPPESLPPMAPARLWFL 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL ++Q+     G            D ++ L           + ++R  E     RD+
Sbjct: 61  VESLRELQQRWRDVGSRLLV----VAGDPVQLLPRLASLLEAPAVVWSRDVEPYARERDR 116

Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            + K LQ          D +LL P  I       Y+V+ PF +     + ++   ++  P
Sbjct: 117 QVAKALQADGCKVLVDWDQLLLAPDLIKTGGGDPYRVFGPFLRNWRGQVERSGPSTVDPP 176

Query: 181 AIRLT----------------GPVTPSNIPRFF----DYPFQAIDPMFP-IGEQNALHIL 219
              +                 G +      +      ++ F+  D      GE  A   L
Sbjct: 177 RALIDLEAEMLEAVLGGEGALGRLCTEGQRQLEQLQVEHGFRGTDLCPSRPGEAAAAAQL 236

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-EFVDLLIKPKSGA 278
             F    +  Y   R+ P + GTS LS  LS+G +SPRQ W   +  + +    + +   
Sbjct: 237 AAFADGALLAYEPDRNFPGMPGTSYLSAGLSVGTVSPRQAWCAAQGVKEIARSDEQQQAI 296

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
             W  EL WREFY+  +  +P +  G P+     +  W  +S   +AW++G TG PIIDA
Sbjct: 297 TVWEQELCWREFYQQALFHFPELADG-PYREQWRRFPWENNSDWFEAWREGQTGMPIIDA 355

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           AMRQLN  GWMHNR RMI ASFLVKDL+ DWR GE  FM   +DGDLA+NNGGWQW+AS+
Sbjct: 356 AMRQLNQSGWMHNRCRMIVASFLVKDLICDWRWGERAFMELEVDGDLAANNGGWQWSASS 415

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           G D  P  RIFNP  Q  +FD +G +IR W+PEL +V T+ +    S         +YP 
Sbjct: 416 GMDPKP-LRIFNPATQATKFDAEGEYIREWVPELRHVNTKDL---ISGEIPALERRSYPE 471

Query: 459 PIVDHKKACHHTLNQYYAAK 478
            +++HK         Y   +
Sbjct: 472 QLINHKVQQAKFKALYATIR 491


>gi|157692159|ref|YP_001486621.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032]
 gi|157680917|gb|ABV62061.1| deoxyribodipyrimidine photo-lyase [Bacillus pumilus SAFR-032]
          Length = 466

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 160/477 (33%), Positives = 244/477 (51%), Gaps = 25/477 (5%)

Query: 18  LRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQ 74
           +R+ D+ AL  A       + K++A++   P  + +  +     HF + +L    K   +
Sbjct: 1   MRLDDHIALSKAITYAKKHEYKLLALYHLDP-FFTEMKMDLNNEHF-FQNLAYFVKEARK 58

Query: 75  KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134
             +          DD +           +  +F+N        RRDK +   L+ + I  
Sbjct: 59  SQVYVHLLH----DDVLRAFQQVMDVYNINAVFFNEDEVGIGQRRDKQVTDFLEKKGIHV 114

Query: 135 S-FDDSVLLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIRLTGPVT 189
           S + D+ L     IL      Y+V+TP+ ++      Q +++ D        +     ++
Sbjct: 115 STWQDTHLHGAQDILKADGSHYQVFTPYYQSWRKQEKQPVIKVDKSFFSSGHMICDESLS 174

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                +  D           IG + A++ L++F ++++  Y E+RDIP++ GTS+LS +L
Sbjct: 175 QKGNEKLRDLIKGCSRKFDQIGTEKAMNTLQQFIQKRLTRYQEKRDIPSVFGTSKLSRFL 234

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G +S R  ++ + EE     +    G  +++ EL WR+FY  + A YP     K    
Sbjct: 235 KTGTISIRTIFHAIYEEA----LYEDEGRETFIKELAWRDFYHMIYAHYPE-MKEKEINS 289

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             + + WN D  L +AW +G TGFP++DA MRQLN  GWMHNRLRM+TASFL KD L+DW
Sbjct: 290 AFQGMRWNDDETLFEAWCKGETGFPLVDAGMRQLNEEGWMHNRLRMVTASFLTKDYLIDW 349

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE YF  +L+D D ASN GG+QWAAS G D+VPYFRIFNP  Q KRFDP G FIR ++
Sbjct: 350 RKGEAYFAKKLVDYDEASNIGGFQWAASVGTDAVPYFRIFNPITQSKRFDPSGEFIRKYV 409

Query: 430 PELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           PEL ++  ++IH P              L   YPLP VDH++     ++ +  AK+Q
Sbjct: 410 PELEHIDEKWIHEPSKMPIDEQLKSGCVLGDTYPLPTVDHQERRKKAISLFEEAKQQ 466


>gi|326780339|ref|ZP_08239604.1| Deoxyribodipyrimidine photo-lyase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660672|gb|EGE45518.1| Deoxyribodipyrimidine photo-lyase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 455

 Score =  350 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 223/473 (47%), Gaps = 28/473 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V   +DLR+ DN  L AA  ++D +V+ +F+      R    +  +  F+   L 
Sbjct: 1   MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G      +     ++   +     +    ++           RR++ + + 
Sbjct: 60  ALDAGLRHRGGRLIVRRG----EAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSI-LNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVP 180
           L          D+V+  L PG +        + V+TP+ +      V+      R++ VP
Sbjct: 116 LADTGRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLTAPRTVRVP 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               + P+   +  +           +   GE+    ++  +    +  Y +  D  A  
Sbjct: 176 DGVASDPLPDRDSVKNLSPG------LARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGD 229

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LSP+L  G +S  +  +R +E       K   G  +++ +L WR+F+  ++A  P 
Sbjct: 230 ATSRLSPHLHFGTVSAAELVHRARE-------KGGLGGEAFVRQLAWRDFHHQVLADRPD 282

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 + P  ++  W  D+  + AWK G TG+P++DAAMRQL   GWMHNR RM+ ASF
Sbjct: 283 ASWS-DYRPRHDR--WRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASF 339

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGKRFD 
Sbjct: 340 LTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDA 398

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           +G ++R W+PEL  V    IH P      +  +L+YP P+VD  +A       
Sbjct: 399 RGDYVRRWVPELAEVEGSAIHEPWKLQGLDRAALDYPDPVVDLAEARARFERA 451


>gi|260829102|ref|XP_002609501.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
 gi|229294858|gb|EEN65511.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
          Length = 514

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 121/499 (24%), Positives = 197/499 (39%), Gaps = 32/499 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVI--AVFIATPEQWRQHGISARQSHFIYAS 64
           M   + W R  LR+ DN +L  A        +   V++  P       +   +  F+   
Sbjct: 1   MKSTIHWFRKGLRLHDNPSLRDALQMLQPGDVWRCVYVLDPWFAGSSNVGVNRWRFLLQC 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL +        +    D           + +V+ L +    E     RD  + 
Sbjct: 61  LEDLDASLRKLNSRLYVIRGQPTD----VFPRLFKEWKVSCLSFEEDSEPFGRERDMAVM 116

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           K  +   +         L     I++ +  Q    Y  F+  L +             + 
Sbjct: 117 KLAKEAGVKVILRTSHTLYKLQDIIDVNGGQPPLTYKRFQAILSKMDPPDQPVDSITAST 176

Query: 183 --RLTGPVTPSNIPR-----FFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVE 232
              LT P+   +  +       +  F   +    ++P GE  AL  L +  + K +    
Sbjct: 177 VDNLTTPIRDDHDEKFGVPSLEELGFDTDNLNPVVWPGGETEALTRLERHLERKAWVASF 236

Query: 233 QRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           +R        +   + LSPYL  G LSPR  + +L E +  +  +      S   +L+WR
Sbjct: 237 ERPKMTASSLLASPTGLSPYLRFGCLSPRLFYKKLTELYKKVK-RSNHPPLSLYGQLLWR 295

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF+       P+            +I W+K+   L  W +G TGFP IDA M QL   GW
Sbjct: 296 EFFYTAATNNPNFDKMVN-NTICVQIPWDKNPEALAKWAEGQTGFPWIDAIMAQLQQEGW 354

Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F 
Sbjct: 355 IHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFH 413

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIV 461
           ++ P   G+R DP G FIR +LP+L   P +YI+ P +  +      K  +  +YPLP+V
Sbjct: 414 VYCPVNFGRRTDPNGDFIRKYLPKLRGFPAKYIYDPWNSPESVQKAAKCIIGKDYPLPMV 473

Query: 462 DHKKACHHTLNQYYAAKKQ 480
           +H +     + +     +Q
Sbjct: 474 NHAETSRINVERMKQVYQQ 492


>gi|159044861|ref|YP_001533655.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
 gi|157912621|gb|ABV94054.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
          Length = 476

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 155/491 (31%), Positives = 236/491 (48%), Gaps = 25/491 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M + T  +  + W+R DLR++DN+AL AA     A VI VF+  P       + A     
Sbjct: 1   MSSQTDRAPVIWWVRRDLRLSDNRALVAAVETG-APVIPVFLCDPIL---DSLGAAPKWR 56

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
                  +  +L  +G    Y +     D++E L +   +     ++++R Y+ ++V RD
Sbjct: 57  FGLGAAALDAALRDRGSRLIYRKG----DALETLRALVSETGAETVYWSRAYDPDQVARD 112

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           K ++  LQ   +  +SF   +L+ P ++   +   YKVYTPF KA+    +     +   
Sbjct: 113 KAVKSGLQDDGVDARSFTGHLLIEPWTVETGSGGFYKVYTPFWKAVRDRAMPEPQPAPDR 172

Query: 180 PAIRLTGPVTP----SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                  P +       +    +     + P   IGE  A   L  F   +V  Y   RD
Sbjct: 173 IPAPDNWPESDRLDYWALGAAMNRGAAIVAPHLAIGEDAARGRLGAFIAHRVGDYDRARD 232

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           IP I+GTS+LS  L+ G + P  CW   +    +     K+GA ++L EL+WREF  HL+
Sbjct: 233 IPGIEGTSRLSENLTYGEIGPATCWQAGQRALAE----GKAGAETFLKELVWREFAYHLV 288

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P +   K +    +   W  D+   + W++G TG   +DAAMR++   G MHNR RM
Sbjct: 289 WHTPHLIE-KNWRAEWDHFPWRDDNADAETWRRGRTGIRFVDAAMREMYVTGTMHNRGRM 347

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I AS+L K L+  WR+G+ +F   L+D D ASN  GWQWAA +G D+ PYFR+FNP  Q 
Sbjct: 348 IVASYLTKHLMTHWRVGQAWFDDCLVDWDPASNAMGWQWAAGSGPDAAPYFRVFNPDTQL 407

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHT 470
            +FD   ++ R ++ E    P +   A     P SW    D +  YP PIV   +     
Sbjct: 408 DKFDRDQSYQRRFIAEGQGTPPEDARAYFDAIPRSWGLSPDDA--YPDPIVPLDEGRKRA 465

Query: 471 LNQYYAAKKQS 481
           L+ Y A K  +
Sbjct: 466 LDAYQARKDAA 476


>gi|284041014|ref|YP_003390944.1| cryptochrome, DASH family [Spirosoma linguale DSM 74]
 gi|283820307|gb|ADB42145.1| cryptochrome, DASH family [Spirosoma linguale DSM 74]
          Length = 487

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 139/488 (28%), Positives = 224/488 (45%), Gaps = 40/488 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQSHF 60
           M+  L W RNDLR+ DN+    A  N+D +V+ VF+  P  + +H       +SA +++F
Sbjct: 1   MNRILYWFRNDLRLHDNEGFVRALENAD-QVLPVFVFDPRWFARHSQLEFRRMSAFRANF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  S+  +++SL  +G               + L     +   T ++ +++    E  ++
Sbjct: 60  LLESVADLRQSLRSRGADLIVR----VGKPADVLAELAGEIGATAVYASKEVTHEETTQE 115

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L  +L+   +  + F  S L     +     Q+  V++ FR+ L +  +     +LP 
Sbjct: 116 TKLSTKLKPLNIDIELFWMSTLYHVRDLPFTISQLPDVFSKFRQQLEKKAIIRPAFTLPT 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM------------FPIGEQNALHILRKFCKEKV 227
             I L   + P  IP      F   D              F  GE  AL  L ++  +  
Sbjct: 176 R-IELVPNIDPGAIPTLSTLGFNDTDIRLILQPDARGAVPFSGGETVALARLDRYLWQTD 234

Query: 228 --YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               Y E R+ +     +S+ S +L+ G LSPR+ +  +     + +       +  + E
Sbjct: 235 LIATYKETRNGLLGEDYSSKFSAWLATGCLSPRKIYEEVTRYETERV--RNESTYWLIFE 292

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WR+F+R +   + +    +  I       + +D  L Q W +G+TG P IDA MR++N
Sbjct: 293 LLWRDFFRFVALKFGTRIFKRSGIKHDLHKTYGRDEDLFQKWAEGHTGIPFIDANMREMN 352

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+M NR R   ASFLV DL +DW  G  YF S+L+D D  SN G W + A  GND   
Sbjct: 353 ATGFMSNRGRQNVASFLVSDLGLDWTWGAAYFESKLIDYDPCSNWGNWNYVAGVGNDPRQ 412

Query: 405 Y----FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSL 454
           +     R FN   Q  R+D QG +++HWLPEL  VP + +H   S   +        L  
Sbjct: 413 FSNGQPRYFNILSQALRYDEQGDYVKHWLPELAKVPNEQVHLAWSLSSEQQETYGVVLGQ 472

Query: 455 NYPLPIVD 462
           +YPLP+VD
Sbjct: 473 DYPLPVVD 480


>gi|182439675|ref|YP_001827394.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468191|dbj|BAG22711.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 455

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 222/473 (46%), Gaps = 28/473 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V   +DLR+ DN  L AA  ++D +V+ +F+      R    +  +  F+   L 
Sbjct: 1   MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G      +     ++   +     +    ++           RR++ + + 
Sbjct: 60  ALDAGLRHRGGRLIVRRG----EAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSI-LNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVP 180
           L          D+V+  L PG +        + V+TP+ +      V+      R++ VP
Sbjct: 116 LADTGRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLTAPRTVRVP 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               + P+   +              +   GE+    ++  +    +  Y +  D  A  
Sbjct: 176 DGVASDPLPDRDSVENLSPG------LARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGD 229

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LSP+L  G +S  +  +R +E       K   G  +++ +L WR+F+  ++A  P 
Sbjct: 230 ATSRLSPHLHFGTVSAAELVHRARE-------KGGLGGEAFVRQLAWRDFHHQVLADRPD 282

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 + P  ++  W  D+  + AWK G TG+P++DAAMRQL   GWMHNR RM+ ASF
Sbjct: 283 ASWS-DYRPRHDR--WRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASF 339

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGKRFD 
Sbjct: 340 LTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDA 398

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           +G ++R W+PEL  V    IH P      +  +L+YP P+VD  +A       
Sbjct: 399 RGDYVRRWVPELAEVEGSAIHEPWKLQGLDRAALDYPDPVVDLAEARARFERA 451


>gi|223647560|gb|ACN10538.1| Cryptochrome-1 [Salmo salar]
          Length = 643

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 122/501 (24%), Positives = 198/501 (39%), Gaps = 42/501 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL  A  +SD  V  V+   P       +   +  F+   L  + 
Sbjct: 5   SIHWFRKGLRLHDNPALLEAVRDSDT-VRCVYFLDPWFAGSSNLGVNRWRFLLQCLEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
            SL +        +                   +++L +    E     RD  ++K   +
Sbjct: 64  SSLRKLNSRLFVIRG----QPANIFPRLFKDWNISQLTFECDSEPFGKERDAAIKKLATE 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSLPVPAI----- 182
             V   S     L      L+  +++   + P      Q LV        PV A+     
Sbjct: 120 AGVEVVSRISHTLYD----LDKIIELNGGHPPLTFKHFQTLVDSMPPPDAPVEALSRASM 175

Query: 183 -RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFC-----KEKVY 228
            R   PV+ ++  +       +  F        ++P GE  AL  + +            
Sbjct: 176 GRCVTPVSDNHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALTRIERQLGPDLSTAWQV 235

Query: 229 YYVEQRD--IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
            +   R    P +     LSPYL  G LS R  +++L E +  +         S  ++L+
Sbjct: 236 NFESTRKTASPLLPSPLGLSPYLRFGCLSCRLFYSKLAELYKKVKTNGSPPI-SLYDKLL 294

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P         P   +I W++++  L  W +  TGFP IDA M QL   
Sbjct: 295 WREFFYTAATNNPRFDKMDG-NPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMTQLRQE 353

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W    S  +    +
Sbjct: 354 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWL-CHSCSSFFQQF 412

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLP 459
           F  + P   G++ DP+G FIR +LP L ++P +YI+ P +         K  + ++YP P
Sbjct: 413 FHCYCPVGFGRKIDPKGDFIRRYLPVLKDMPDKYIYDPWNAPIEVQRAAKCVVGVDYPKP 472

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 473 MVNHAEASRLNIERMRQMYQQ 493


>gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti]
 gi|108883518|gb|EAT47743.1| DNA photolyase [Aedes aegypti]
          Length = 553

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 125/506 (24%), Positives = 201/506 (39%), Gaps = 37/506 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS-----DAKVIAVFIATPEQWRQHGISARQSH 59
           ++    + W R  LR+ DN AL AA            +  VFI  P   +   +   +  
Sbjct: 2   SSQQTVVHWFRKGLRLHDNPALLAAIRRCRDSPQQYALRPVFILDPAIVQWLRVGPNRWR 61

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  + ++L +        +     + ++       +  V+ L +    E   ++R
Sbjct: 62  FLQQTLADLDRNLRKINSRLYVVRG----NPVDVFPKLFQEWNVSFLTFEHDIEPYSIKR 117

Query: 120 DKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  +E++ + H V  +      +  P +IL        +      +L   L   +  + P
Sbjct: 118 DATVEEQAKKHGVKIQIEKSLTIYDPDAILKMNAGRPPLTYQKYGSLASTLKIPEPVATP 177

Query: 179 VPAIRLTGPVTPSNIPR---------FFDYPFQAIDP---MFPIGEQNALHILRKFCKEK 226
                   P   SN  +           +   +  D     FP GE  AL  L    K K
Sbjct: 178 KEIPSDCVPKQDSNERKRANCYDPPLLVELGVKEEDLGECKFPGGETEALRRLEDHMKRK 237

Query: 227 VY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +   + +    P      T+ LSPY+  G LS R     L+        K      S +
Sbjct: 238 SWVCSFEKPNTSPNSLEPSTTVLSPYVKFGCLSARLFMRELQTVIKGQ--KHSQPPVSLI 295

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +L+WREFY    A  P+             + W+ +   L+AW  G TG+P IDA MRQ
Sbjct: 296 GQLMWREFYYCAAADEPNFDKM-VGNSICLHVPWDSNKEFLEAWTHGRTGYPFIDAIMRQ 354

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S    
Sbjct: 355 LRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEEFLLDADWALNAGNWMW-LSASAF 413

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455
              YFR+++P   GK+ DP+G FI+ ++PEL   P+  I+ P              +  +
Sbjct: 414 FHQYFRVYSPVAFGKKTDPEGKFIKKYVPELAKYPSGIIYEPWKASVDVQKKLGCIIGKD 473

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQS 481
           YP  IV H++     + +   A +++
Sbjct: 474 YPNRIVIHEEIHKKNIQKMTEAYRKN 499


>gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus]
 gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus]
          Length = 828

 Score =  349 bits (896), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 125/493 (25%), Positives = 191/493 (38%), Gaps = 50/493 (10%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL     ++ A +  VF+  P       +   +  F+   L  + 
Sbjct: 50  TVHWFRKGLRLHDNPALREGLKDA-ASLRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLD 108

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L Q        +        + L     +   T L +    E     RD  + +  + 
Sbjct: 109 RNLRQLNSRLFVIRG----QPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKE 164

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-- 186
             +   S     L     I+        +           +   D    P PAI L    
Sbjct: 165 LNIDVISAVSHTLYKLERIIEKNNGRAPLTY---NQFQAIIASMDAPPQPEPAITLAAIG 221

Query: 187 -PVTPSN--------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQR 234
             VTP          +P   +  F+      P++  GE  AL  L +    +        
Sbjct: 222 RAVTPQCDDHDDKYGVPTLEELGFETEGLKPPIWVGGETEALARLERHLGTQ-------- 273

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                   + LSPYL  G LS R  + +L + +    IK      S   +L WREF+   
Sbjct: 274 --------TGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAYPPLSLHGQLFWREFFYCA 323

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   +I W++++  L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 324 ATKNPNFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 382

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P  
Sbjct: 383 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVK 441

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT+YIH P +  +      +  +  NYPLP+V+H  A 
Sbjct: 442 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPESVQRAARCIIGKNYPLPMVNHAIAS 501

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 502 RANMERIKQVYQQ 514


>gi|239940078|ref|ZP_04692015.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
           15998]
 gi|239986566|ref|ZP_04707230.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
           11379]
          Length = 451

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 135/465 (29%), Positives = 216/465 (46%), Gaps = 22/465 (4%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           V   +DLR+ D+  L AA  ++D +V+ +F+      R    +  +  F+   L  +   
Sbjct: 2   VLFTSDLRLHDHPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNRLAFLADCLADLDTG 60

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L  +G      +          +     Q     +           +R++ + + L    
Sbjct: 61  LRDRGGRLIVRRGGT----AREVKRVVEQTGADSVHIAAGVSGYAAQREERIREALAGTG 116

Query: 132 ICKSFDDSVL--LPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                 D+V+  L PG +        + V+TP+ +      V+  L +     +R+   V
Sbjct: 117 CELRVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTLAAP--RTVRVPDGV 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           +   +P   D        +   GE+    ++  +    +  Y +  D  A   TS+LSP+
Sbjct: 175 SGDALPD-RDAVKGVSPGLARGGEEAGRKLVTSWLHGPMAAYEDGHDDLAGDATSRLSPH 233

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G +S  +  NR +E       K   G  +++ +L WR+F+  ++A  P       + 
Sbjct: 234 LHFGTVSAAELANRARE-------KGGPGGEAFVRQLAWRDFHHQVLAARPDASWS-DYR 285

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           P  ++  W  D   ++AWK G TG+P++DAAMRQL   GWMHNR RM+TASFL K L VD
Sbjct: 286 PRHDR--WRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTASFLTKTLYVD 343

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGKRFDP G ++R W
Sbjct: 344 WRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDPDGAYVRRW 402

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           +PEL  V    +H P      +   ++YP P+VD  +A       
Sbjct: 403 VPELAEVEGPAVHEPWKLEGLDRAGVDYPDPVVDLAEARSRFERA 447


>gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas]
          Length = 536

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 139/513 (27%), Positives = 223/513 (43%), Gaps = 44/513 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------- 52
           M + ++    L+W R  LRI DN AL  A   S+  V  VF+  P   +           
Sbjct: 1   MPSGSS---TLMWFRKGLRIHDNPALEYASKGSN-FVYPVFVIDPHYMKPDPNAFSPGST 56

Query: 53  -ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
                +  F+  SL  +  SL + G      +       I  L     +  V ++ +   
Sbjct: 57  RAGLNRIKFLLESLADLDLSLKKLGSKLLVLKGEPSQVLISCL----KEWDVKRVCFEYD 112

Query: 112 YEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNL 169
            +      D  ++       +   S     L  P  I+  +  +    Y  F K   +  
Sbjct: 113 TDPYYQALDVKVKDFASSVGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFLKVAGEPS 172

Query: 170 VQADLRSLPVPAIRLTGPV---TPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKF 222
             +   S+ + ++   G V     S +P   +  +  ++      F  GE  AL  LR+ 
Sbjct: 173 WASSPLSISISSLPPVGDVGSCEISEVPTVEELGYGDVEQDEWTPFRGGESEALKSLRES 232

Query: 223 CKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
            K+K +   + + +  P+      T+ LSPYL  G LS R  +  L++ + ++  K  S 
Sbjct: 233 IKDKEWIANFEKPKGDPSAFVKPATTVLSPYLKFGCLSSRYFFQCLQDVYRNVK-KHTSP 291

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIID 337
             S + +L+WR+F+  +    P+    K      ++I WN+D+ LL AW+   TG+P ID
Sbjct: 292 PVSLVGQLLWRDFFYTVAFGTPNFDQMKDNR-ICKQIPWNEDTELLAAWRDARTGYPWID 350

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A M QL   GWMH+  R   A FL + DL V W  G + F   L+D D A NNG W W  
Sbjct: 351 AIMVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLW-L 409

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKN 450
           S  +    Y RI++P   GK++DP G +IRH+LP L ++P ++I+ P +         K 
Sbjct: 410 SCSSFFYQYNRIYSPISFGKKYDPNGNYIRHFLPVLKDMPKEFIYEPWTAPLSVQTKAKC 469

Query: 451 DLSLNYPLPIVDHKKA---CHHTLNQYYAAKKQ 480
            +  +YP P+V H  A   C   L + YA  ++
Sbjct: 470 IIGRDYPKPVVSHDSASKECKRKLAEAYALNQK 502


>gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST]
 gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST]
          Length = 556

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 126/503 (25%), Positives = 199/503 (39%), Gaps = 38/503 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHFIYA 63
             + W R  LRI DN AL  A     A      +  +F+  P   +   +   +  F+  
Sbjct: 6   TIVHWFRKGLRIHDNPALTVAVDKVRANPAKYCLRPIFVLDPGIRKWLRVGPNRWRFLQQ 65

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L  + ++L          +     + +E          V+ L Y    E   V+RD  +
Sbjct: 66  TLANLDENLRSINSRLYVVRG----NPVEVFPKLFADWNVSLLTYEHDIEPYAVKRDSTV 121

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           E++  +H V         +  P  I+     +    Y  +        +   L       
Sbjct: 122 EEQARKHWVEVHIEKSHTIFDPEGIVKKNGGKPPLTYQRYATLASACKIPQPLPVPQKLP 181

Query: 182 IRLTGPVTPSNI-----------PRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVY- 228
            + T P                     D    ++    FP GE  AL  + +    K + 
Sbjct: 182 AKETSPEADKEERKNPSCYDPPTMEELDIEEASMGQCKFPGGESEALRRMNEILSRKAWV 241

Query: 229 -YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
             + +    P      T+ LSPYL  G LS R  ++R+ E       K      S + ++
Sbjct: 242 CKFEKPNTSPNSLEPSTTVLSPYLKFGCLSVRLFYSRIAETIKGQ--KHSQPPVSLIGQV 299

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREFY  + A  P+            +I+W+ +   L+AW  G TG+P IDA MRQL  
Sbjct: 300 MWREFYYCVAAATPNYDKM-VGNGICTQIDWDTNKDYLEAWTHGRTGYPFIDAIMRQLRQ 358

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S       
Sbjct: 359 EGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMW-LSASAFFHQ 417

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458
           YFR+++P   GK+ DP+G FI+ ++PEL   P   I+ P     +        +  +YP+
Sbjct: 418 YFRVYSPVAFGKKTDPEGKFIKKYVPELARFPAGIIYEPWKANLETQKKLGCIIGKDYPM 477

Query: 459 PIVDHKKACHHTLNQYYAAKKQS 481
            IV H+      + +  AA K++
Sbjct: 478 RIVVHEDISKVNIQRMSAAYKRN 500


>gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis]
 gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis]
          Length = 621

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 132/487 (27%), Positives = 207/487 (42%), Gaps = 23/487 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI--SARQSHFIYASLLQ 67
            ++W R  LR+ DN AL  AC  + A V  VFI  P   +Q        + +F+  SL  
Sbjct: 7   SILWFRKGLRLHDNPALLEACRGA-AHVYPVFILDPFFLQQSSYKVGVNRYNFLLESLRD 65

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  S   +G      +        E       + R+T+L +    E     RD  ++   
Sbjct: 66  LDASFRSRGSRLLVLRGKPE----EVFPRVFREWRITQLCFEVDTEPYARVRDARIQGLA 121

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +      S  L  G   +     +           +       R  P      +  
Sbjct: 122 DEAGVAVWTAVSHTLYVGLFCSCTAGRHGPVLGGCWLWKEKAPAPGGRRGPACENAPSTD 181

Query: 188 VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPA---IQG 241
              + +P + +  F +A   +F  GE  AL  L     +  +   + +    PA      
Sbjct: 182 AATTAVPTWQEVGFTEAPTTIFKGGETEALKRLSASLADSKWVADFKKPDTDPAAFERPA 241

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           T+ LSPY+  G LSPR    RL E +       +    S   +L+WREF+  + A  P+ 
Sbjct: 242 TTVLSPYVKFGCLSPRLFHARLLEVYRRHRGHSQP-PVSLRGQLLWREFFYTVGAHTPNF 300

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                  P  ++I+W+ D  LL AW++  TGFP IDA M QL   GWMH+  R   A FL
Sbjct: 301 -HRMDGNPLCKQIDWDDDEELLAAWREARTGFPWIDAIMTQLRQWGWMHHLARHSVACFL 359

Query: 362 VK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            + DL V W  G + F   L+D D   N   W W +++   S  YFR+++P   GK++DP
Sbjct: 360 TRGDLYVSWERGMQVFEELLIDQDHYLNAANWMWLSASAFFSQ-YFRVYSPISFGKKYDP 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQY 474
           +G FIR +LP L ++P++YI+ P +   +        +  +YP P+VDH       + + 
Sbjct: 419 EGKFIRKFLPVLKDMPSKYIYEPWTAPSEVQRRAGCVIGRDYPHPVVDHALVSKQNIARM 478

Query: 475 YAAKKQS 481
            AA + +
Sbjct: 479 AAAYRSN 485


>gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator]
          Length = 558

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 121/494 (24%), Positives = 189/494 (38%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L      +      VF+  P       +   +  F+   L  + 
Sbjct: 56  TVHWFRKGLRLHDNPSLREGLAGASTF-RCVFVLDPWFAGSTNVGINKWRFLLQCLEDLD 114

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        + L     +   T L +    E     RD  +    + 
Sbjct: 115 CSLRKLNSRLFVIRG----QPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKE 170

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I         L     I+        +     + ++ ++   +   L V +  +    
Sbjct: 171 LGISVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVVASMEPPEPPVLTVTSACIGSAY 230

Query: 189 TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           TP          +P   +  F     + P++  GE  AL  L +  + K +     R   
Sbjct: 231 TPLKDDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKM 290

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             Q      + LSPYL  G LS R  + +L + +    IK      S   +L+WREF+  
Sbjct: 291 TPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAMPPLSLHGQLLWREFFYC 348

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+    +   P   +I W+K+   L  W  G TGFP IDA M QL   GW+H+  
Sbjct: 349 AATKNPNFDRMQG-NPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLA 407

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 408 RHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 466

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKA 466
             G++ DP G +IR +LP L N PT+YIH P           K  +   Y LP+V+H K+
Sbjct: 467 RFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKCIVGKEYSLPMVNHSKS 526

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 527 SRINIERMKQVYQQ 540


>gi|302530487|ref|ZP_07282829.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4]
 gi|302439382|gb|EFL11198.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. AA4]
          Length = 445

 Score =  349 bits (895), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 229/470 (48%), Gaps = 33/470 (7%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W R DLR+ D+ AL+ A  +S   ++A+++            + +  F+  SL ++ K+
Sbjct: 2   LWFRRDLRLRDHAALFEAAKHSK-HLLALYVLDDRLLE--PAGSPRIAFLLNSLRELDKA 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHR 130
           LS + +V          D +  + +   + R   +  +         RD  + + L +HR
Sbjct: 59  LSGRLMV-------RCGDPVREVVAAAREIRAAAVHVSADTAPYGRERDDAVAEALAEHR 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           +          + PG +       Y+V+TPF +A  Q+       +  V  +    P + 
Sbjct: 112 IQWVPTGSPYAVTPGRVTKPDGTPYRVFTPFYRAWAQHGWPRPADTN-VSIVDWVKPASS 170

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
             +P       +    + P GE+ AL   ++F  + +  Y  +RD P   GT++LSPYL 
Sbjct: 171 EPLPEPP----EVECELPPAGEEAALAGWQEFLADGLAEYATERDRPDHAGTTRLSPYLR 226

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G + PR           DL      GA +  +EL WREF+  ++   P     + +   
Sbjct: 227 WGAIHPRTML-------ADLAGNRSEGAQALRSELCWREFHADVLWHRPETAR-RNYDQR 278

Query: 311 TEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            + + ++       +   W++G TG+PI+DA MRQL   GWMHNR+RMI ASFLVKDL +
Sbjct: 279 FDGMRYDTGKTAREMFALWREGRTGYPIVDAGMRQLLAEGWMHNRVRMIVASFLVKDLHL 338

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W  G  +FM  L+DGDLASN   WQW A +G D+ PYFRIFNPT QG++FDP+G ++R 
Sbjct: 339 PWWWGARHFMKHLVDGDLASNQLNWQWVAGSGTDAAPYFRIFNPTTQGQKFDPKGDYVRR 398

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           ++PEL  V  + +H         +    YP PIVDH +     L +Y A 
Sbjct: 399 YVPELRGVAGKAVH------VLKERPEGYPQPIVDHAEERQVALQRYGAI 442


>gi|312889794|ref|ZP_07749340.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Mucilaginibacter paludis DSM 18603]
 gi|311297720|gb|EFQ74843.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Mucilaginibacter paludis DSM 18603]
          Length = 493

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 131/480 (27%), Positives = 210/480 (43%), Gaps = 30/480 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHF 60
           +    LVW RNDLRI DN+ L  A   +D KV+ VF      +             ++ F
Sbjct: 10  SEKTILVWFRNDLRIHDNEILVEALRKAD-KVLPVFCFDNFYFKITRYGTRKTGDFRTRF 68

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++  ++K+L Q G            D ++ +     +  V++++++R+    E    
Sbjct: 69  LLEAVADLRKTLQQHGAELIVRSG----DPVDIIPQLAEEYHVSEVYHHREVAFEETDIS 124

Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP- 178
             +E  L + ++  K F          +      +  V+T FRK + ++         P 
Sbjct: 125 AKVEAVLWKKKLNLKHFIGHTFYHKEDLPFPIKDIPDVFTTFRKKVERDSSIRPCFETPG 184

Query: 179 ---VPAIRLTGPVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKE--KVYYYV 231
              +P I   G + P+     FD P         F  GE  AL  L ++  E   +  Y 
Sbjct: 185 NISIPPIDHPGEI-PTLQQLGFDEPVDDSRAVLHFKGGETEALKRLHEYFWESDCLKTYK 243

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             R+ +     +S+ SP+LS+G LS RQ +  +K    +         +  + EL+WR++
Sbjct: 244 TTRNGLLGADYSSKFSPWLSVGCLSVRQVYWEVKRYEQERG--ANDSTYWLIFELLWRDY 301

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +R +   Y +                  +  L + WK G TG P IDA MR+LN  G+M 
Sbjct: 302 FRFMFKKYGNQFFKAGGFKGQAPEVVPHEDELFEKWKAGETGVPFIDANMRELNATGFMS 361

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   ASFLVKDL V+W  G  YF  +L+D   ASN G W + A  GND     R  N
Sbjct: 362 NRGRQNVASFLVKDLKVNWTKGAAYFEEKLIDYSPASNWGNWAYVAGVGNDPREN-RHLN 420

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHK 464
              Q   +DP+G +++ W+PEL  +P + +  P    +      K +L +NYP  I++  
Sbjct: 421 VIKQAIEYDPKGEYVKTWIPELTMIPAKLVQTPFFLTEADLKLYKVELGVNYPKLIINLA 480


>gi|320007131|gb|ADW01981.1| Deoxyribodipyrimidine photo-lyase [Streptomyces flavogriseus ATCC
           33331]
          Length = 459

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 135/478 (28%), Positives = 223/478 (46%), Gaps = 26/478 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L+AA  +SD +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MTVAIVLFTSDLRLHDHPPLHAALASSD-EVVPLFVLDPGVEAAGFAAPNRRAFLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G      +     +  E +     +     +           RR++ L + 
Sbjct: 60  DLDSGLRDRGGRLVVREG----EVAEEVRRIVSETEAGVVHMAAGISGYAQRREERLREA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHA--LQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           L       S  D+V+  + PGS++        + V+TP+ +          LRS      
Sbjct: 116 LSSVGCRLSVHDAVVTAVAPGSVVPSGAGRDHFAVFTPYFRRWS----GEGLRSPFGAPR 171

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           ++  P  P +         + + P +   GE     +   + ++ +  Y ++ D  A   
Sbjct: 172 KVRVPEGPGSAALPSRAGTRGLSPGLAEGGETEGRRLFTAWRRDGLASYEDRHDDMAGDA 231

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP+L  G LSP +  +R +            GA +++ ++ WR+F+  ++A  P+V
Sbjct: 232 TSRLSPHLHFGTLSPTELVHRARAT-------GGPGAEAFVRQVCWRDFHHQVLATRPAV 284

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                                  AWK+G TG+P++DAAMRQL   GWMHNR R++TASFL
Sbjct: 285 SRSDYRPKQDRWRTGRAAEADTAAWKEGRTGYPVVDAAMRQLLHEGWMHNRGRLLTASFL 344

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K L VDWR G  +F+  L+DGD+A+N   WQW A TG DS P  R+ NP  Q KR+DP+
Sbjct: 345 AKTLYVDWRTGARHFLELLVDGDIANNQLNWQWVAGTGTDSRP-NRVLNPVTQAKRYDPE 403

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           G ++R W+PEL  +P   +H P     ++    +YP P+V         L ++  A++
Sbjct: 404 GAYVRRWVPELAGIPGSAVHEPWKLPREDRRRYDYPEPVVGLSDG----LARFKEARR 457


>gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens]
          Length = 574

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 188/494 (38%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L             VF+  P       +   +  F+   L  + 
Sbjct: 23  TVHWFRKGLRLHDNPSLREGL-TGATTFRCVFVLDPWFAGSTNVGINKWRFLLQCLEDLD 81

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        + L     +   T L +    E     RD  +    + 
Sbjct: 82  CSLRKLNSRLFVIRG----QPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALCKE 137

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I         L     I+        +     + ++ ++   +     V +  +    
Sbjct: 138 LGISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVASMDPPEPSVPTVTSACIGSAY 197

Query: 189 TPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           TP          +P   +  F     + P++  GE  AL  L +  + K +     R   
Sbjct: 198 TPLKEDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKM 257

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
             Q      + LSPYL  G LS R  + +L + +    IK      S   +L+WREF+  
Sbjct: 258 TPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAVPPLSLHGQLLWREFFYC 315

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+    +   P   +I W+K+   L  W  G TGFP IDA M QL   GW+H+  
Sbjct: 316 AATKNPNFDRMQG-NPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLA 374

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 375 RHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 433

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKA 466
             G++ DP G +IR +LP L N PT+YIH P           K  +  +Y LP+V+H K+
Sbjct: 434 RFGRKADPNGDYIRRYLPILKNFPTRYIHEPWNAPLSVQRAAKCIIGKDYSLPMVNHSKS 493

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 494 SRINIERMKQVYQQ 507


>gi|18400841|ref|NP_566520.1| UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase [Arabidopsis
           thaliana]
 gi|306756349|sp|O48652|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair
           defective 3
 gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
          Length = 556

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 137/512 (26%), Positives = 214/512 (41%), Gaps = 44/512 (8%)

Query: 5   TAMSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--------- 52
           T+M+     L+W R  LR+ DN AL  A   S+  +  VF+  P                
Sbjct: 18  TSMATGSGSLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSR 76

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
               +  F+  SL  +  SL + G      +    +  +  L     + +V +L +    
Sbjct: 77  AGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCL----QEWKVKRLCFEYDT 132

Query: 113 EINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           +      D  ++       V   S     L  P  I+        +       +      
Sbjct: 133 DPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSC 192

Query: 172 ADLRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFC 223
           A    +     +P I   G +  S +P   +  ++  +      F  GE  AL  L K  
Sbjct: 193 AKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSI 252

Query: 224 KEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            +K +   + + +  P+      T+ +SPYL  G LS R  +  L+  + D+  K  S  
Sbjct: 253 SDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK-KHTSPP 311

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S L +L+WREF+       P+    K      ++I WN+D  +L AW+ G TG+P IDA
Sbjct: 312 VSLLGQLLWREFFYTTAFGTPNFDKMKGNR-ICKQIPWNEDHAMLAAWRDGKTGYPWIDA 370

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W  S
Sbjct: 371 IMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMW-LS 429

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKND 451
             +    + RI++P   GK++DP G +IRH+LP L ++P QYI+ P +            
Sbjct: 430 CSSFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCI 489

Query: 452 LSLNYPLPIVDHKKA---CHHTLNQYYAAKKQ 480
           +  +YP P+V H  A   C   + + YA  K+
Sbjct: 490 VGKDYPKPMVLHDSASKECKRKMGEAYALNKK 521


>gi|238502227|ref|XP_002382347.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           flavus NRRL3357]
 gi|220691157|gb|EED47505.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
           flavus NRRL3357]
          Length = 572

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 146/417 (35%), Positives = 219/417 (52%), Gaps = 18/417 (4%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W ++DLR+ DN+AL  A          +IA++I +PE    H  S  +      +L Q
Sbjct: 133 VHWFKSDLRLHDNRALRKAYEVAREHSIPLIALYILSPEDLTAHLSSPARVDLTLRTLEQ 192

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++  L +  I        +  D  + +   C +     LF N +YE++E+RR+  L +  
Sbjct: 193 LKLDLGELDIPLHMETQESRRDIPQRIIHLCQEWGANHLFANIEYEVDELRREAKLVRLC 252

Query: 128 QHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--------LRSLP 178
               I      D+ ++PPG + +   + Y VY+P+ ++    L+             S P
Sbjct: 253 VENGIAFDVLHDTCVVPPGLLSSQQGKQYAVYSPWFRSWQMFLMDNPEHLEVSEEPGSNP 312

Query: 179 VPAIRLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
             A ++   +  S      N  R  D   +    ++P GE   L  L  F +EK   Y +
Sbjct: 313 GNARKVFKDLFASEVPGAPNNKRLSDEEREHFRQLYPAGEHEGLDRLESFLEEKATAYDD 372

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
            R+  + Q TS LSPY + G LS R    + K+   + L + + G  SW++E+ WR+FY+
Sbjct: 373 MRNSLSKQTTSVLSPYFASGSLSARTAVAKAKKANKNQLDRNELGFVSWISEVAWRDFYK 432

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H++  +P +CM K F P    +EW  ++   +AW +G TGFPI+DAAMRQ+ +  WMHNR
Sbjct: 433 HVLVRWPFICMNKCFKPEFTDLEWEYNTDYFKAWCEGRTGFPIVDAAMRQMKSSAWMHNR 492

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            RMI ASFL KDLL+DWR GE YFM  L+DGD ASN+GGW + +STG D  PYFRIF
Sbjct: 493 SRMIVASFLSKDLLIDWRRGERYFMEHLIDGDFASNHGGWGFGSSTGVDPQPYFRIF 549


>gi|311739236|ref|ZP_07713073.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305662|gb|EFQ81728.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 477

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 147/487 (30%), Positives = 224/487 (45%), Gaps = 59/487 (12%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQS 58
           +  TAM+  L+W R+DLR+ DN+AL  A   +   DA ++AV +  P       +    +
Sbjct: 39  RRMTAMTC-LMWFRDDLRLHDNQALSRAATAASLGDAPLVAVVLDEPAYPGTRPLGGATT 97

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            +   SL  +   L+  G+           D+ E +     +   T + + R+Y      
Sbjct: 98  WWRERSLYALAHDLADHGVELI----RAAGDAREEIPRLAAELGATTVTWTRRYHGPLRE 153

Query: 119 RDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            D  +++ L        S     L+ P  + N   Q YKV+TPF KA    +   +   +
Sbjct: 154 VDATVKETLTSQGTTATSLPGFTLVEPWEVTNGQGQPYKVFTPFSKAAASQVAGDEPEGV 213

Query: 178 PVP------AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
           P        A     P  P+      ++        +  GE  A   L +     +  Y 
Sbjct: 214 PEMGASASSASAWPKPTEPAWAASLAEH--------WTPGEAGARERLAQL---DLANYA 262

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           E+RDIPA+  TS LSP+L  G +SPR+ W              +  A  + +EL+WR+F 
Sbjct: 263 EERDIPALNATSLLSPHLRFGEVSPREVWF---------AAAEEPEAAKFHSELLWRDFA 313

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            H +   P++          ++ +W+ D   L+ W+ G TG P++DA MR+L   G+MHN
Sbjct: 314 WHRLYHLPNLATEN-VREKFDRFDWSWDDPRLKDWQAGTTGIPLVDAGMRELWATGYMHN 372

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM+  SFL K+L + WR+GEE+F   L+D D ASN   WQW A  G+D+ P+FRIFNP
Sbjct: 373 RVRMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNP 432

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
             Q KRFDP G ++R W P L+        AP               PIVD +++    L
Sbjct: 433 ETQAKRFDPDGEYVRRWAPALS--------AP---------------PIVDLQESRQAAL 469

Query: 472 NQYYAAK 478
           + Y   K
Sbjct: 470 DAYAEIK 476


>gi|254438207|ref|ZP_05051701.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
           307]
 gi|198253653|gb|EDY77967.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
           307]
          Length = 533

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 147/483 (30%), Positives = 217/483 (44%), Gaps = 34/483 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              + W+R D RI DN AL AAC      VI VFI   E    HG + +    +   +  
Sbjct: 66  KPVIYWVRRDFRIGDNAALSAACATG-RPVIPVFICD-EVVESHGAAPKFR--LGEGVRV 121

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
              +L+  G      +     D++  L     Q   T +++NR Y+     RD  ++  L
Sbjct: 122 FGAALAVVGSRLVLRRG----DALAVLREVVAQTGATGVYWNRLYDPASKARDTGVKAAL 177

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   V   SF   +L  P ++       Y+V+TP  K +    V   + +       +  
Sbjct: 178 KADGVEVASFTGHLLFEPWTVETKTGGFYRVFTPLWKTVRGRDVATPIPA----PASVPA 233

Query: 187 PVTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P       R  D+            +     +GE  A   L  F + +V  Y   RD+P 
Sbjct: 234 PDVWPTSDRLDDWALGAAMVRGRDVLAAHICVGEAAARTRLETFIEGRVQSYQTNRDLPG 293

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           + GTS+LS  L+ G +SP  CW+         +   K  A  +  EL+WREF  HL+   
Sbjct: 294 VDGTSRLSENLTYGEISPAVCWHAGWA----AIHSGKGQAEIFCKELVWREFAYHLVHHT 349

Query: 299 PSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           P + + + +    +   WN +D+  + AWKQG TG   +DAAMR++   G MHNR RMI 
Sbjct: 350 PHI-VDRNWKEGWDSFPWNTEDTAEVIAWKQGRTGIAFVDAAMREMYVSGTMHNRGRMIV 408

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS+L K L+  W++G+ +F   L D D ASN  GWQWAA +G D+ PYFR+FNP  Q  +
Sbjct: 409 ASYLTKHLMTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLDK 468

Query: 418 FDPQGTFIRHWLPELN-NVPTQYIH----APHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           FD  G + R W+ E   + P   +      P +W      +  YP P+VD        L 
Sbjct: 469 FDRAGLYARTWIAEGQGDAPDTALSYFDAIPKNWGLAA--TDQYPAPVVDMATGRQRALE 526

Query: 473 QYY 475
            Y 
Sbjct: 527 AYK 529


>gi|223647614|gb|ACN10565.1| Cryptochrome-1 [Salmo salar]
          Length = 523

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 131/496 (26%), Positives = 207/496 (41%), Gaps = 38/496 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL AA  +   ++  VF+  P       I   +  F+  +L  +  
Sbjct: 6   IHWFRKGLRLHDNPALVAALRDCK-EIYPVFVLDPYSPNNVNIGINRWKFLIGALKDLDC 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        E       + +VT+L Y    E   +RRDK + +  +  
Sbjct: 65  SLRKLNSRLFVVRGKTD----EVFPKLFQKWKVTRLTYEYDTEPFSLRRDKEVGRLAEEH 120

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPAIRLTGP 187
            +   +  S  L     ++  ++      P     +Q LV       R +P P       
Sbjct: 121 GVEIIYKVSHTLYN---IDRIIEENNGKAPLTYNRLQTLVSSIGPPKRPIPAPTCDDMKD 177

Query: 188 VTP------------SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
           V              S + + +  P    + +FP GEQ AL  L +    K +   + + 
Sbjct: 178 VKTPCSEKHEENYGISTLEKLYQDPESLTEELFPGGEQEALRRLDQHMARKEWVCGFEKP 237

Query: 234 RDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           +  P      T+ LSPY++ G LS R  W  L + +     K      S   +L+WREF+
Sbjct: 238 QTSPNSLSPSTTVLSPYMTFGCLSARTFWWSLTDVYQGK--KHSQPPVSLHGQLLWREFF 295

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
                  P+    +   P   +++W+ +   L AW +  TGFP IDA M QL   GW+H+
Sbjct: 296 YTAGLGIPNFDKMEG-NPVCTQVDWDSNFEYLAAWAEARTGFPFIDAIMTQLRQEGWIHH 354

Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
             R   A FL + DL + W  G++ F   LLDGD + N G WQW  S       +FR+++
Sbjct: 355 LARHAVACFLTRGDLWISWEEGQKVFEELLLDGDWSLNAGNWQW-LSASTFFHQFFRVYS 413

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHK 464
           P   GK+ D  G +I+ +LP L   P QYI+ P              +  +YP PIV+H+
Sbjct: 414 PIAFGKKTDKNGDYIKKYLPHLKKYPAQYIYEPWKAPRSVQEAAGCIVGKDYPRPIVEHE 473

Query: 465 KACHHTLNQYYAAKKQ 480
                 + +  AA  +
Sbjct: 474 VISKKNIQRMKAAYAK 489


>gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum]
 gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum]
 gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum]
          Length = 535

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 127/493 (25%), Positives = 192/493 (38%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN +L      +      VF+  P       +   +  F+   L  + +
Sbjct: 20  VHWFRRGLRLHDNPSLREGLKGARTF-RCVFVLDPWFAGSSNVGINKWRFLLQCLEDLDR 78

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     +   T L +    E     RD  L    Q  
Sbjct: 79  SLRKLNSRLFVIRG----QPADALPKLFKEWGTTALTFEEDPEPFGGVRDHNLTTLCQEL 134

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I         L     I++       +      A+I  +        PV    L G  T
Sbjct: 135 GISVVQKVSHTLYHLQDIIDRNGGRAPLTYHQFLAIIACMGPPPQPEPPVTFNSLNGAHT 194

Query: 190 PS--------NIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P          +P   +  F     + P++  GE  AL  L +  + K +     R    
Sbjct: 195 PLTDDHDEKYGVPTLEELGFDTEGRLPPVWQGGESEALARLERHLERKAWVASFGRPKMT 254

Query: 239 IQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R  + +L + +    IK      S   +L+WREF+   
Sbjct: 255 PQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAFPPLSLHGQLLWREFFYCA 312

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   +I W+K++  L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 313 ATKNPNFDKMIG-NPICVQIPWDKNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 371

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P  
Sbjct: 372 HAVACFLTRGDLWLSWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPIK 430

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N+P+QYIH P +  +      K  +  +Y LP+V+H  A 
Sbjct: 431 FGRKADPNGDYIRKYLPVLKNMPSQYIHEPWTAPEQVQRAAKCIIGKDYSLPMVNHAAAS 490

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 491 RVNIQRMKQVYQQ 503


>gi|315499875|ref|YP_004088678.1| DNA photolyase fad-binding protein [Asticcacaulis excentricus CB
           48]
 gi|315417887|gb|ADU14527.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB
           48]
          Length = 484

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 144/491 (29%), Positives = 218/491 (44%), Gaps = 29/491 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R+DLR+ D++    A  NS + V+ V+I   EQ  Q  + A    ++  SL  +
Sbjct: 4   TTILWFRSDLRLQDHEG-VEATLNSGSPVVPVYIYD-EQLAQRPLGAASKWWLDRSLRSL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            +SL  +G      + S    ++  L     Q   T+L  +R +E      D  L K L 
Sbjct: 62  DQSLRARGARLIVLKGS----ALAQLKRLIGQVSATRLIASRTFEPKIDAFDAQLSKAL- 116

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN----------LVQADLRSLP 178
             +  + F+  +L  P  I       YKV+TPF +AL+            L         
Sbjct: 117 -GIPVEIFNTHLLSDPTQIRTGDGNPYKVFTPFYRALLARGAARGHARKALATPWPAPAE 175

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            P       +          + +     ++  GE  A   L  F +  +  Y   RD P 
Sbjct: 176 WPESVDIDALGLKPALTLSGHDWSEGFDVWTPGEDGAHQRLSAFLRSGLKGYAPDRDRPD 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  TS+LSP+L  G +SP +  +  +                +  EL WR+F  +++   
Sbjct: 236 LDITSRLSPHLRFGEISPHRVLHEAEAHAA-AHPALSDDLEKFRAELAWRDFSYNILQLQ 294

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +     F    + + W  D   L+AW++G TG+ ++DA MRQL   G+MHNR+RM+ A
Sbjct: 295 PELDRVN-FKSAFDAMPWRDDPAGLRAWQRGETGYSLVDAGMRQLWRTGFMHNRVRMVCA 353

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K LL+DWR GE++F   L+D D ASN   WQW A +G D+ PYFRIFNP  Q ++F
Sbjct: 354 SFLSKHLLIDWRQGEQWFWDTLVDADPASNTASWQWVAGSGADAAPYFRIFNPLTQAEKF 413

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK---------NDLSLNYPLPIVDHKKACHH 469
           DP+G + R ++            A H   ++            S   P  IVDH  A   
Sbjct: 414 DPKGAYRRRFVSGFTEKIAGAASAHHQKFERDLFDFAGVSASNSKGAPRLIVDHAVARQR 473

Query: 470 TLNQYYAAKKQ 480
            L+ Y   KK 
Sbjct: 474 ALDAYAQMKKD 484


>gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris]
          Length = 538

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 117/492 (23%), Positives = 197/492 (40%), Gaps = 32/492 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L     N       +FI  P       +   +  F+   L  + 
Sbjct: 6   TVHWFRKGLRLHDNPSLRHGL-NGAKTFRCIFILDPWFANASNVGINKWRFLLQCLEDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL +        +        + L     +   T L +    E     RD+ +    + 
Sbjct: 65  RSLMKLNSRLFVIRG----QPADILPKLLKEWGTTCLTFEEDPEPFGRVRDQNIMAMCRG 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   S     L     I+        +     ++++ ++    L   PV +  +   V
Sbjct: 121 MNITVISLVAHTLYKLECIIERNGGRAPLTYHQFQSVVASMESPPLPVPPVTSTVVGDAV 180

Query: 189 TPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY--YYVEQRD 235
           +P +      Y    ++ +           +  GE  AL  L +  + K +   + + + 
Sbjct: 181 SPISDDHDEKYGVPTLEELGFDTEGLLPGVWQGGESEALSRLERHLERKAWVASFGKPKM 240

Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P   +   + LSPYL  G LS R  + +L + +    IK      S   +++WREF+  
Sbjct: 241 TPQSLLPSQTGLSPYLRFGCLSTRLFYYQLNDLYRK--IKKAVPPLSLHGQVLWREFFYC 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+        P   ++ W+K+   L  W  G TGFP IDA M QL   GW+H+  
Sbjct: 299 AATKNPNFDRMIG-NPICVQVPWDKNPEALAKWANGQTGFPWIDAIMTQLREEGWIHHLA 357

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P 
Sbjct: 358 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPV 416

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G++ DP G +IR +LP L N+PT+YIH P +  +      K  + ++YPLP+++H   
Sbjct: 417 RFGRKADPNGDYIRKYLPVLKNMPTKYIHEPWNCPESVQKAAKCTIGVDYPLPMLNHSVV 476

Query: 467 CHHTLNQYYAAK 478
             H + +     
Sbjct: 477 SKHNIERMKQVY 488


>gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
 gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
          Length = 595

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 132/495 (26%), Positives = 213/495 (43%), Gaps = 31/495 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI--SARQSHFIYASLLQ 67
            ++W R  LR+ DN AL  AC ++   V  VF+  P   +Q     S  + +F+  SL  
Sbjct: 7   SIIWFRKGLRLHDNPALLEACKDAK-HVYPVFVLDPHFLQQSSYKVSVNRYNFLLESLED 65

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-R 126
           +Q+S   +G      +        E       +  VT+L +    E     RD  + +  
Sbjct: 66  LQRSFQARGSRLLVLRGKPE----EVFPRVFREWGVTQLCFEHDTEPYAKVRDAAVRRLA 121

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-- 184
            +  V   +     L     ++        +       L+  +      +   PA     
Sbjct: 122 AEAGVEVVTPISHTLYDTDMLVARNGGAAPLTMQSFTKLVDRVGDPPAPAPDPPAAMPPP 181

Query: 185 -----TGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVY--YYVEQRDI 236
                +     + +P + +  F+     +F  GE  AL  L    ++  +   + +    
Sbjct: 182 AEDMPSAAPAATGVPTWQEVGFKEPPLTVFKGGETEALARLEAAFQDPKWVAGFQKPDTD 241

Query: 237 PAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           P+      T+ LSPYL  G LS R    RL E +            S   +L+WREF+  
Sbjct: 242 PSAWEKPATTVLSPYLKFGCLSARLFHARLLEVYR-RHPAHSQPPVSLRGQLLWREFFYT 300

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           + +  P+        P  ++I+W+ +   L AW++  TGFP IDA M QL T GWMH+  
Sbjct: 301 VGSTTPNF-HRMAGNPVCKQIDWDDNPEFLAAWREARTGFPWIDAIMTQLVTWGWMHHLA 359

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G E F   L+D D   N   W W +++   S  YFR+++P 
Sbjct: 360 RHSVACFLTRGDLYVSWERGMEVFEEHLIDQDHYLNAANWMWLSASAFFSQ-YFRVYSPV 418

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
           + GK++DP+G FIR +LP L ++P +YI+ P +   +        +  +YP PIVDH  A
Sbjct: 419 VFGKKYDPEGRFIRKFLPVLKDMPAKYIYEPWTAPLEVQRKAGCVVGRDYPAPIVDHAVA 478

Query: 467 CHHTLNQYYAAKKQS 481
               + +  AA ++S
Sbjct: 479 SKACIARMAAAYRRS 493


>gi|225010806|ref|ZP_03701274.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-3C]
 gi|225005014|gb|EEG42968.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-3C]
          Length = 438

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 150/476 (31%), Positives = 222/476 (46%), Gaps = 51/476 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + + W R DLR  DN  L  A   S  KV+ +FI   E          +  FI   L ++
Sbjct: 5   IVIFWFRRDLRYNDNTGLSKAL-LSGKKVLPIFIFDTEILDMLPEKDPRLQFIVNQLHEI 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR---VTKLFYNRQYEINEVRRDKLLEK 125
            +  + +   FQ    S  +  +    S         V  ++ N  YE   V+RD  ++ 
Sbjct: 64  NQHFNTQ---FQSGVQSYHNSPLNVFKSLLEAANDFKVCGVYTNEDYEPYAVQRDLEIKA 120

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L  + V   SF D V+     +     + Y VYTP++   +    Q      P     +
Sbjct: 121 YLATKSVDFHSFKDQVVFEKDQVTKEDGKPYVVYTPYKNKWLSIFEQQ----YPNGFQEI 176

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRDIPAIQ-G 241
             P+          +  +A+      G  +A   + K+      +  Y  +R+ P+I+ G
Sbjct: 177 DMPLENLYKMNTSLHDMKAL------GFSSAEIEVPKYSVTSALIEAYEAKRNFPSIENG 230

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+L P+L  G +S R    + K +   +          +L+ELIWREF+  ++  +P  
Sbjct: 231 TSKLGPHLRFGTVSIRALVQKAKGQKNQV----------FLSELIWREFFMQILWHFPHT 280

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                F P  ++IEW  ++   + WK G TG+P++DA MR+LN  G MHNR+RM+ ASFL
Sbjct: 281 PT-NAFKPAYDRIEWRNNAAEFEHWKNGTTGYPLVDAGMRELNATGTMHNRVRMLVASFL 339

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+DWR GE YF  +LLD +LASN G WQWAA +G D+ PYFRIFNPT Q  +FD Q
Sbjct: 340 CKHLLIDWRWGEAYFAEKLLDFELASNVGNWQWAAGSGVDAAPYFRIFNPTTQIDKFDKQ 399

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             +++ W+ +L  +                    YP PIVDHK A    L  Y  A
Sbjct: 400 HIYLKKWVSDLGEL-------------------TYPSPIVDHKMARERCLATYKKA 436


>gi|6118527|gb|AAF04135.1|AF191033_3 DNA photolyase [Mycobacterium smegmatis]
          Length = 431

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 157/469 (33%), Positives = 223/469 (47%), Gaps = 44/469 (9%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +WLR DLR+ D  AL AA    D+ V+  F+  P   R      R+  F++ SL ++   
Sbjct: 1   MWLRRDLRLGDLPALQAARGTDDSSVLLCFVVDPRLARS--SGERRLAFLFDSLRELDDK 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L  + +V +           E +           +  +  +     RRD+ + + L   V
Sbjct: 59  LDGRLLVVRGRPD-------EEIPRLARAVDAEAVHISADFTPFGRRRDEAVAEALGE-V 110

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
             ++     L+ PG I     + YKV+TPF +    +  +    S  VP+  +  P   +
Sbjct: 111 PLEATGSPYLVSPGRITKDDGEPYKVFTPFFRRWRDHGWRRPAES-SVPSSAVVDPADIA 169

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
           N  R    P   +   FP GE  A     +F    +  Y E RD PA   TS++S YL  
Sbjct: 170 NSGRIA-VPTAPVKLSFPAGEDAARQRWAEFVDADLADYDEIRDDPAADATSRMSAYLKY 228

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G + PR     L             GA ++L EL +R+FY  ++  +P            
Sbjct: 229 GNIHPRTLAVDL---------GKGKGAQAYLRELAFRDFYADVLWHWPHSLWHNWNR-RF 278

Query: 312 EKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           + IE + D       + WK G TGFP++DA MRQLN  GWMHNR+RMITASFLVKDL + 
Sbjct: 279 DAIELDTDDAAYERFEVWKAGRTGFPLVDAGMRQLNETGWMHNRVRMITASFLVKDLHLP 338

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W  G EYF+ QL+DGD+ASNN GWQWAA TG D+ PYFR+FNP  Q K+FDP+G ++R W
Sbjct: 339 WWWGAEYFLEQLVDGDMASNNHGWQWAAGTGTDAAPYFRVFNPQTQAKKFDPKGEYVRRW 398

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + ++                    + +YP PIVDH       L +Y   
Sbjct: 399 VGDVE-------------------ADDYPGPIVDHSAERAEALRRYGEI 428


>gi|167626681|ref|YP_001677181.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596682|gb|ABZ86680.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 499

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 126/483 (26%), Positives = 212/483 (43%), Gaps = 31/483 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLRI DN AL  A    D  V+ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQVVWFKRDLRIYDNLALTQAATKGD--VLPIYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
              L++ G            D++E  +    Q  +  ++ +++   N   +RD  LEK  
Sbjct: 59  NTELTRLGQPLILM----IGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I              ++ H     K    + K + + +V+A  +   +   +   P
Sbjct: 115 KQNNIVWHQPYQ-----NGVVRHLADRDKWALVWHKRVSEKIVEAPNKLKFICENQTKIP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
              S         +         G   AL IL  F  ++   Y ++   P  A +  S+L
Sbjct: 170 TAES-----IGLEYDNCYKRQKGGRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFY 298
           SPY++ G +S R+ +    +   ++ +       K  S   S+L+ L W   +   +   
Sbjct: 225 SPYIAFGAISIREVYQLANQRKKEIKVSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PS+        + +  +   +    +AWK G TG+P+IDA MR L   GW++ R+R +  
Sbjct: 285 PSIEYENLHSAYDQLRKEPINQQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    
Sbjct: 345 SFASYHLWLDWRVTSIYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G FI+ W+PEL NV  + IH P  WL+K++ +++YP PI+D K+A     +  Y  +
Sbjct: 403 DPNGEFIKRWIPELENVSNENIHTP--WLEKHN-AVDYPDPIIDEKQARKFAADNIYKIR 459

Query: 479 KQS 481
           K S
Sbjct: 460 KDS 462


>gi|285017930|ref|YP_003375641.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas
           albilineans GPE PC73]
 gi|283473148|emb|CBA15654.1| putative deoxyribodipyrimidine photo-lyase; photolyase protein
           [Xanthomonas albilineans]
          Length = 503

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 146/469 (31%), Positives = 221/469 (47%), Gaps = 19/469 (4%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
              MS  +VW R DLR+ D  AL+AA       V  V++ +PE        A    ++  
Sbjct: 28  RVRMSYAIVWFRRDLRLHDQPALHAALAAGHTPV-PVYLHSPEDEGDWAAGAASCAWLQR 86

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +   L   G      +      +   L     +     +++NR+YE     RD  L
Sbjct: 87  SLAALDAQLRACGSRLILRRGP----AEHALRQVIAECGAVAVYWNRRYEPATQPRDARL 142

Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-----VQADLRSL 177
           ++ L+   +   S + ++L  P  +       YKV+TPF ++ +        + A     
Sbjct: 143 KRELRALGLEVHSHNGALLFEPWQLATQQGGPYKVFTPFWRSALSRWQVPAPMHAPATLP 202

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           P P    +  +    +    D+  +     +  GEQ A   L  F    +  YV  RD P
Sbjct: 203 PPPQALHSLALDALGLMSAHDWD-RGFWECWQPGEQGAHEALDVFVDGALRDYVAGRDRP 261

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
              GTS+LSP+L  G ++P +  + L++          +    ++ +L WR+F  HL+  
Sbjct: 262 DQVGTSRLSPHLHFGEIAPWRIVSALQQHRRAATG---TAIDGYIRQLGWRDFAYHLLHH 318

Query: 298 YPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +P     +   P  E+  W       LQAW++G +G PI+DA +R+L   GWMHNR+RMI
Sbjct: 319 FPHTPE-RNLNPRFERFRWATPGPVQLQAWQRGRSGVPIVDAGLRELWRTGWMHNRVRMI 377

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS+L K L V W  G  +F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q +
Sbjct: 378 VASYLCKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAQ 437

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-NDLSLNYPL-PIVDH 463
           +FDPQG +I  W+PEL  +P     AP     +   ++ +YP  PIVD 
Sbjct: 438 KFDPQGAYIARWVPELAALPVADRFAPWLVPQRLARVAPHYPRQPIVDL 486


>gi|206603959|gb|EDZ40439.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 534

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 147/477 (30%), Positives = 229/477 (48%), Gaps = 27/477 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW RN+LR+ DN  L  A       ++ VF+   E   +      +  +   SL ++ 
Sbjct: 62  SIVWFRNNLRLLDNPPLREAAERG--PLLPVFV--GEHPGKQPPEGARQWWQARSLRRLD 117

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SLS++G    + +     D    L     + +  K+      + +  R    L+  L  
Sbjct: 118 HSLSRRGAPLLFLRG----DPATLLPDLATRLKADKILAMEAIDPDGRRTQSRLQGALSG 173

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP-----VPAIR 183
           + V    F    L+ P  +       +KV+TPF +    +L        P     +P  R
Sbjct: 174 KPVELHLFPADYLISPADLPAGRRSPWKVFTPFWQRAQSHLPPPLPLPAPDRLDGIPFPR 233

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              P      P   D+  + +   +  GE+ A   L  F ++++  Y  +RD      +S
Sbjct: 234 TETPDDWGWEPENPDWATE-MRGFWDPGEEGAWRRLHAFLEKRLENYRVRRDFLEEDTSS 292

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L+ G +S R  W  +KE        P      +L+EL WREF  HLM  +P +  
Sbjct: 293 LLSPHLANGEISIRSVWWAIKE-----STAPDKDREKFLSELGWREFSAHLMWHHPDLAS 347

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +      E I W +D   L AW++G TG P++DA MRQL  +G++ NR+RM+ ASFLVK
Sbjct: 348 ERLHKERPE-IRWREDPFSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAASFLVK 406

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +LL+DWR G E+F   L+D D A+N   WQW +  G D+ P+FRIFNP +QG++FDP+G 
Sbjct: 407 NLLIDWRKGREWFADNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKFDPEGR 466

Query: 424 FIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLNYPL--PIVDHKKACHHTLNQY 474
           +++ +LPEL+ +  +YIH P     + LD   +    P   PIVD   +    L  +
Sbjct: 467 YVKTYLPELHGLSPRYIHCPWTAPAALLDSAGIGEQSPYRNPIVDLGLSRKRALQAW 523


>gi|115738187|ref|XP_785873.2| PREDICTED: similar to Cry1-A protein [Strongylocentrotus
           purpuratus]
 gi|115977051|ref|XP_001194752.1| PREDICTED: similar to Cry1-A protein [Strongylocentrotus
           purpuratus]
          Length = 516

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 130/491 (26%), Positives = 197/491 (40%), Gaps = 31/491 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN AL     ++      ++I  P           +  F+   L  +  
Sbjct: 21  VHWFRKGLRLHDNPALKEGLKSASGF-RCIYILDPWFAGSCSKGVNRWRFLLECLEDLDS 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL +        +        + L     + +VT+L +    E     RDK +    Q  
Sbjct: 80  SLRKLNSRLFLIRG----QPADVLPRLFKEWKVTQLSFEEDSEPFGRTRDKAISTLAQEA 135

Query: 131 VI-CKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQ-ADLRSLPVPAIRLTGP 187
            +   S     L  P  IL  +  +    Y  F+  +    +      +L    +     
Sbjct: 136 GVKVISKVSHTLYDPQEILALNNNEPPLTYKRFQDIISLMGIPIYPAEALEAEDVEGLDT 195

Query: 188 VTPSN------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY--YYVEQRDI 236
               N      IP   +  F   D   PM+  GE  A   L +  + K +   +   R  
Sbjct: 196 FIDPNHEDKYGIPTLEELGFDPEDVPPPMWIGGETEAKQRLDRHLERKAWVANFERPRMS 255

Query: 237 PA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           PA  +   + LSPYL  G LSPR  + +L E +  +  K  +   S   +L+WREF+  +
Sbjct: 256 PASLMASPAGLSPYLRFGCLSPRTFYWKLTELYQKVR-KTTNTPLSLHGQLLWREFFFTV 314

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                         P   +I W+K++ LL  W  G TG+P IDA M QL   GW+H   R
Sbjct: 315 ACNN-RQFDHMVDNPICIQIPWDKNTALLNKWANGETGYPWIDAIMTQLRLEGWIHPLAR 373

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P  
Sbjct: 374 HAVACFLTRGDLWISWEEGMKVFDEYLLDADWSVNAGNWIW-LSCSSFYQQFFHCYCPVK 432

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
            G+R DP G ++R +LP L N P++YI  P +         K  +  +YPLPIVDH +A 
Sbjct: 433 FGRRTDPNGDYVRKYLPFLKNFPSKYIFEPWTAPIEVQEKAKCIIGKDYPLPIVDHAEAS 492

Query: 468 HHTLNQYYAAK 478
           H  + +     
Sbjct: 493 HRNIERMRKVY 503


>gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
           corporis]
 gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
           corporis]
          Length = 506

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 125/502 (24%), Positives = 193/502 (38%), Gaps = 32/502 (6%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            +  +    + W R  LR+ DN +L     NS      VF+  P       +   +  F+
Sbjct: 5   SSQNSGKHTVHWFRKGLRLHDNPSLREGIKNS-VTFRCVFVIDPWFAGSSNVGINKWRFL 63

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  + +SL +        +        + L     +   T L +    E     RD 
Sbjct: 64  LQCLEDLDRSLRKLNSRLFVIRG----QPADTLPKLFKEWGTTNLTFEEDPEPFGRVRDL 119

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +    +   I   S     L     I+        +     + +I N+         V 
Sbjct: 120 NIMAMCKELGISVVSKSSHTLYKLEHIIEKNGGNPPLTYHQFQTIIANIGPPPEPEETVT 179

Query: 181 AIRLTGPVTPSN--------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYY 229
           A  L G  TP +        +P   +  F+       ++  GE  AL  L +  + K + 
Sbjct: 180 ANLLEGSQTPLSDDHDNKYGVPTLEELGFETDKLKPTVWSGGESEALARLERHLERKAWV 239

Query: 230 YVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
                     Q      + LSPYL  G LS R  + +L E +    IK      S   +L
Sbjct: 240 ASFGHPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLVELYKK--IKKAMPPLSLHGQL 297

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREF+       P+        P   +I W++++  L  W  G TGFP IDA M QL  
Sbjct: 298 LWREFFYCAATKNPNFDKMNE-NPICVQIPWDENAQALAKWANGQTGFPWIDAIMTQLRE 356

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    
Sbjct: 357 EGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQ 415

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPL 458
           +F  + P   G++ DP G +IR +LP L N PT+YIH P    +      K  +  ++PL
Sbjct: 416 FFHCYCPVRFGRKADPNGDYIRKYLPILKNFPTKYIHEPWLAPETEQRAAKCIIGKDFPL 475

Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480
           P+V+H       + +     +Q
Sbjct: 476 PMVNHSIVSKINIERMKQVYRQ 497


>gi|306835185|ref|ZP_07468221.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           accolens ATCC 49726]
 gi|304568940|gb|EFM44469.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           accolens ATCC 49726]
          Length = 445

 Score =  347 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 145/481 (30%), Positives = 219/481 (45%), Gaps = 51/481 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHN------SDAKVIAVFIATPEQWRQHGISARQSHFIY 62
             L+W R+DLR++DN+AL  A         S  +++AV +  P       +      +  
Sbjct: 2   TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPAYPSTRPLGGATHWWRE 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + + L+ +G+           D+   + S   +     + +NR+Y       D  
Sbjct: 62  RSLHALAQELASRGVKLL----RATGDARTVIPSIAHEVGADTVTWNRRYHGPLREVDAR 117

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           ++  L    I   S     L+ P  + N     YKV+TPF  A    L   +   +P   
Sbjct: 118 VKATLADAGINAISCPGFTLVEPWEVTNAQGNPYKVFTPFAAAARSQLADEEPLPVPELL 177

Query: 182 I--RLTGPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
               +    + S      D P  A  +   +  GE  A   L +     + +Y E+RDIP
Sbjct: 178 AGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLGQL---DLAHYAEERDIP 234

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A   TS LSP+L  G +SPR+ W    EE           A  + +EL+WR+F  H +  
Sbjct: 235 ARNATSLLSPHLRFGEVSPREVWVAAAEE---------PDAEKFQSELLWRDFAWHRLYH 285

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +   +       + +W+ +   L+ W++G TG P++DA MR+L   G+MHNR+RM+ 
Sbjct: 286 LPDLAT-RNVRQKFNRFDWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYMHNRVRMVV 344

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFL K+L + WR+GEE+F   L+D D ASN   WQW A  G+D+ P+FRIFNP  Q +R
Sbjct: 345 GSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAQR 404

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP G +IR W P L+        AP               PIVD +++    L  Y   
Sbjct: 405 FDPDGAYIRQWAPTLS--------AP---------------PIVDLRQSRQAALEAYAEI 441

Query: 478 K 478
           K
Sbjct: 442 K 442


>gi|258654813|ref|YP_003203969.1| deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM
           44233]
 gi|258558038|gb|ACV80980.1| Deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM
           44233]
          Length = 459

 Score =  347 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 153/475 (32%), Positives = 224/475 (47%), Gaps = 26/475 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  L+W R DLR+ D+ AL AA  + + +V+ VF+A           + +   +  +L  
Sbjct: 3   STSLLWFRRDLRLGDHPALAAAA-DHNHRVLGVFVADDVPLDA--SGSPRRAVLARTLAA 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +++  + ++      S        L           +  +  Y     RRD+ +++ L
Sbjct: 60  LAQAMDGRLLIAHGRPRS-------VLPRLARAVDADVVHVSADYGPYGRRRDEQVQRAL 112

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           Q   V   +      + PG +     + Y V+TPF +    +  +   RS         G
Sbjct: 113 QDAGVEWVATGSPYAVAPGRVRKSNGERYAVFTPFYRGWTDHGWRKPARSGSGVDWVDPG 172

Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            V         +Y         +  +GEQ AL   R F  E +  Y   RD P   GTS 
Sbjct: 173 EVDGITAHDPQEYARTVPAGMSLPEVGEQAALDGWRTFRDEALDDYDGDRDRPDRPGTSH 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +S YL  G + PR           DL  +  +GA S+  EL WREFY   +   P   + 
Sbjct: 233 MSVYLKWGSIHPRTLL-------ADLAGRRSTGAASYRRELAWREFYADSVFHLPE-SVW 284

Query: 305 KPFIPWTEKIEWNK---DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
               P  +++ W+         +AW+ G TG+P IDA MRQL   GWMHNRLRM TASFL
Sbjct: 285 TSVDPVIDRMAWDSGQPAEERFEAWRAGRTGYPFIDAGMRQLLAEGWMHNRLRMATASFL 344

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +KDL + W+ G E+F+  L+DGD ASNN GWQW A +G  + P+FRIFNP  QG++FDP 
Sbjct: 345 IKDLHLPWQRGAEHFLEHLVDGDYASNNHGWQWVAGSGAQAAPFFRIFNPLTQGEKFDPS 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           G F+R ++PEL +VP + +H P  W     +   YP PIVDH       L ++  
Sbjct: 405 GDFVRRYIPELRDVPGRKVHRP--WELDGGVPAGYPEPIVDHADERAEALRRWQQ 457


>gi|227502618|ref|ZP_03932667.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           accolens ATCC 49725]
 gi|227076658|gb|EEI14621.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           accolens ATCC 49725]
          Length = 445

 Score =  347 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 144/484 (29%), Positives = 220/484 (45%), Gaps = 51/484 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHN------SDAKVIAVFIATPEQWRQHGISARQSHFIY 62
             L+W R+DLR++DN+AL  A         S  +++AV +  P       +      +  
Sbjct: 2   TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVLDEPAYPSTRPLGGATHWWRE 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + + L+ +G+           D+   +     +     + +NR+Y       D  
Sbjct: 62  RSLHALAQELASRGVKLL----RATGDARTVIPRIAHEVGADTVTWNRRYHGPLREVDAR 117

Query: 123 LEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           ++  L    I   S     L+ P  + N     YKV+TPF  A    L   +   +P   
Sbjct: 118 VKATLADAGINAISCPGFTLVEPWEVTNAQGNPYKVFTPFAAAARSQLADEEPLPVPELL 177

Query: 182 I--RLTGPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
               +    + S      D P  A  +   +  GE  A   L +     + +Y E+RDIP
Sbjct: 178 AGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLAQL---DLAHYAEERDIP 234

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A   TS LSP+L  G +SPR+ W    EE           A  + +EL+WR+F  H +  
Sbjct: 235 ARNATSLLSPHLRFGEVSPREVWVAAAEE---------PDAEKFQSELLWRDFAWHRLYH 285

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +   +       + +W+ +   L+ W++G TG P++DA MR+L   G+MHNR+RM+ 
Sbjct: 286 LPDLAT-RNVRQKFNRFDWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYMHNRVRMVV 344

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFL K+L + WR+GEE+F   L+D D ASN   WQW A  G+D+ P+FRIFNP  Q +R
Sbjct: 345 GSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAQR 404

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FDP G +IR W P L+        AP               PIVD +++    L+ Y   
Sbjct: 405 FDPDGAYIRQWAPTLS--------AP---------------PIVDLRQSRQAALDAYAEI 441

Query: 478 KKQS 481
           K  +
Sbjct: 442 KDAN 445


>gi|86605025|ref|YP_473788.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
 gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
          Length = 488

 Score =  347 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 131/488 (26%), Positives = 223/488 (45%), Gaps = 31/488 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASL 65
           L+W R DLR+ D++ L  AC    + +I ++   P  + +           ++ F+  SL
Sbjct: 4   LLWFRTDLRLLDHQPLTRACQQG-SFLIPLYCLDPRHFGRTAFGFPKTGPFRAQFLLESL 62

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++ L  +G      Q        + + +   +  V  ++ + +    E    + L++
Sbjct: 63  ADLRQQLRARGSDLVIRQGQPE----QVIPALAREWGVKAVYAHEEVGTEEEAVARALQQ 118

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            LQ   I         L  P  +      + +V+T FR+ +                  L
Sbjct: 119 ALQPLGIPLHLEWGHTLYHPADLPFALADLPEVFTRFRQQVEAK-AAIRAPLPIPSLPPL 177

Query: 185 TGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKE--KVYYYVEQRD- 235
              + P  +P   +       P      ++  G   A   L+ +  +  ++  Y E R+ 
Sbjct: 178 PPGLDPGPLPTLAELGLSLPPPDPRARFVYAGGSTAAQARLQTYIWDLDRLRVYKETRNG 237

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +     +S+LS +L++G LSPR  +  +K    + +       +  + EL+WR+++R ++
Sbjct: 238 MLDPNDSSRLSAWLALGCLSPRTVYAEVKRYEEERV--RNESTYWLVFELLWRDYFRFIL 295

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A + +       I     I W +D    QAW +G TG+P++DA MR+L   G+M NR R 
Sbjct: 296 AKHGAKLFCPAGIQGI-PIPWQQDGDRFQAWCRGETGYPLVDANMRELAATGFMSNRGRQ 354

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL K+L +DWR+G E+F S L+D D+ASN G W + A  GND+   FR F+   Q 
Sbjct: 355 NVASFLTKNLGIDWRLGAEWFESLLIDYDVASNYGNWNYTAGVGNDARG-FRYFHIPKQS 413

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           + +DPQG ++RHWLPEL  +P   IH P+             L ++YP P+VD  K+   
Sbjct: 414 RDYDPQGHYLRHWLPELAGIPGDKIHEPYRLSAAEQKQFGVRLGVDYPRPVVDLGKSLQA 473

Query: 470 TLNQYYAA 477
           +   Y AA
Sbjct: 474 SRRAYEAA 481


>gi|25027203|ref|NP_737257.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
 gi|23492484|dbj|BAC17457.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
          Length = 492

 Score =  347 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 163/507 (32%), Positives = 222/507 (43%), Gaps = 60/507 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  +TA S  +VW R+DLRI DN AL  A       VI +FI   +Q R  G +AR    
Sbjct: 17  MSLSTA-SPTIVWFRDDLRIRDNAALAWAADRG--PVIGLFI-DEDQPRALGGAARWWR- 71

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              SL  +  +L+  G+           D +  L     +     + +NR+Y      RD
Sbjct: 72  -DRSLTLLVDALATHGVPLLRRSG----DPVVLLTEVVRETGAAAVTWNRRYHGPLRERD 126

Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++ +L+ +     S    +L  P  + + A   YKVYTPF KA      ++  R    
Sbjct: 127 AEIKTQLREQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDP 186

Query: 180 PAIRLTGPVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
              +LTGP TP       D P       +      GEQ AL  L  F         Y + 
Sbjct: 187 MPAQLTGPDTPVADTGGIDAPDPFWAAEMATHCRPGEQAALDRLGDFLDRMRERGGYADG 246

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD  A   TS LSP+L  G +S  + W  +            + A  +  EL+WR+F  H
Sbjct: 247 RDEMARAVTSGLSPHLRFGEISVHRVWEEITAAAD-AGDIDATDAQVFRKELLWRDFAWH 305

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSH----------------------LLQAWKQGYT 331
            +   P +           +  W  D H                       L AW+ G T
Sbjct: 306 RLYALPDMATTN-VREQFNRFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAWRAGRT 364

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G P++DA MR+L   G MHNR RM+ ASFL K+L + WR GEE+F   L+D D ASN   
Sbjct: 365 GIPLVDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFN 424

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           WQWAA +G+D+ PYFRIFNP  Q ++FDP  T+IR W+PE                    
Sbjct: 425 WQWAAGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPEYG------------------ 466

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +  YP PIVD K++    L+ Y A K
Sbjct: 467 -TPEYPAPIVDLKESRREALDAYEAVK 492


>gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
 gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
 gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
 gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana]
 gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana]
 gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana]
          Length = 537

 Score =  347 bits (889), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 135/504 (26%), Positives = 210/504 (41%), Gaps = 41/504 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSHF 60
            L+W R  LR+ DN AL  A   S+  +  VF+  P                    +  F
Sbjct: 7   SLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRF 65

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL + G      +    +  +  L     + +V +L +    +      D
Sbjct: 66  LLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCL----QEWKVKRLCFEYDTDPYYQALD 121

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP- 178
             ++       V   S     L  P  I+        +       +      A    +  
Sbjct: 122 VKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVMS 181

Query: 179 ---VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVY--Y 229
              +P I   G +  S +P   +  ++  +      F  GE  AL  L K   +K +   
Sbjct: 182 YSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVAN 241

Query: 230 YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           + + +  P+      T+ +SPYL  G LS R  +  L+  + D+  K  S   S L +L+
Sbjct: 242 FEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK-KHTSPPVSLLGQLL 300

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P+    K      ++I WN+D  +L AW+ G TG+P IDA M QL   
Sbjct: 301 WREFFYTTAFGTPNFDKMKGNR-ICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKW 359

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W  S  +    +
Sbjct: 360 GWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMW-LSCSSFFYQF 418

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLP 459
            RI++P   GK++DP G +IRH+LP L ++P QYI+ P +            +  +YP P
Sbjct: 419 NRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKANCIVGKDYPKP 478

Query: 460 IVDHKKA---CHHTLNQYYAAKKQ 480
           +V H  A   C   + + YA  K+
Sbjct: 479 MVLHDSASKECKRKMGEAYALNKK 502


>gi|41409179|ref|NP_962015.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41397999|gb|AAS05629.1| Phr [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 442

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 140/472 (29%), Positives = 215/472 (45%), Gaps = 34/472 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+W R DLR+ D+ AL AA  + +  V+A F+  P    Q     R+  F+  SL  +
Sbjct: 2   PALLWFRRDLRLHDHPALSAAADSDE--VLACFVLDPRL--QRSSGPRRLQFLGDSLRVL 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L  + +V +        +  + +         + +  +  +     RRD  +   L 
Sbjct: 58  RDELDGRLLVTRGRPDIRIPEIAKAI-------GASSVHVSEDFTPFGKRRDARVRAALA 110

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   +     L+ PG +       Y+V+TPF +       +  +++    A  L    
Sbjct: 111 S-VPLVATGSPYLVAPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPVKTGAASARWLDPAR 169

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                    + P          GE+ A +  + F    +  Y + R  P I+GTS++S +
Sbjct: 170 LGITDC---EIPDPGATLDLAAGEEAARNKWKSFVDNGLANYADDRHRPDIEGTSRMSAH 226

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G + PR             L    + A ++L EL +R+FY  ++   P+    + + 
Sbjct: 227 LKFGTIHPRTLVA--------DLDLRAAAARAYLRELAFRDFYADVLHHRPASAW-RNWN 277

Query: 309 PWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              + I  +  +       AWK G TGFP +DA MRQL   G+MHNR+RM  ASFLVKDL
Sbjct: 278 SAFDAIRTDTGAEAGRRFAAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASFLVKDL 337

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W+ G  +F+ QL+DGDLA+N  GWQW A  G D+ PYFR+FNP  QG++FDP G +I
Sbjct: 338 HLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDPSGDYI 397

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           R W+PEL      +       L   +    YP PIVDH       L +Y + 
Sbjct: 398 RRWVPELRCADDPH-------LRTGERPPGYPAPIVDHATERAEALRRYRSM 442


>gi|130157|sp|P12768|PHR_STRGR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|47083|emb|CAA33161.1| unnamed protein product [Streptomyces griseus]
          Length = 455

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 138/473 (29%), Positives = 219/473 (46%), Gaps = 28/473 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V   +DLR+ DN  L AA  ++D +V+ +F+      R    +     F+   L 
Sbjct: 1   MSVAVVLFTSDLRLHDNPVLRAALRDAD-EVVPLFVRDDAVHRAGFDAPNPLAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G      +     ++   +     +    ++           RR++ + + 
Sbjct: 60  ALDAGLRHRGGRLIVRRG----EAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSI-LNHALQMYKVYTPFRKALIQNLV---QADLRSLPVP 180
           L          D+V+  L PG +        + V+TP+ +      V   Q   R++ VP
Sbjct: 116 LADSGRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTQTAPRTVRVP 175

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
               + P+   +              +   GE+    ++  +    +  Y +  D  A  
Sbjct: 176 DGVASDPLPDRDCVENLSPG------LARGGEEAGRKLVTSWLNGPMADYEDGHDDLAGD 229

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LSP+L  G +S  +  +R +E       K   G  +++ +L WR+F+  ++A  P 
Sbjct: 230 ATSRLSPHLHFGTVSAAELVHRARE-------KGGLGGEAFVRQLAWRDFHHQVLADRPD 282

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                 + P  ++  W  D+  + AWK G TG+P++DAAMRQL   GWMHNR RM+ ASF
Sbjct: 283 ASWS-DYRPRHDR--WRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASF 339

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L VDWR G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP IQGKRFD 
Sbjct: 340 LTKTLYVDWREGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRFDA 398

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           +G ++R W+PEL  V    IH P      +   L+YP P+VD  +A       
Sbjct: 399 RGDYVRGWVPELAEVEGSAIHEPWKLQGLDRAGLDYPDPVVDLAEARARFERA 451


>gi|227538334|ref|ZP_03968383.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241849|gb|EEI91864.1| deoxyribodipyrimidine photolyase PhrB1 [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 437

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 155/481 (32%), Positives = 229/481 (47%), Gaps = 49/481 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYA 63
           +A+   + W R DLR+ DN AL+ A  +S+A V  VFI       R    +  +  FIY 
Sbjct: 2   SAVPTSIFWFRRDLRLEDNHALFRAL-SSEAAVQPVFIFDSTILTRLDDPADARVTFIYQ 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L  +Q+ L   G   +    + + D     +    + +   ++ N  YE   + RD L+
Sbjct: 61  QLQLLQEQLKPYGSSIK----TYYGDPATVWEEIYEEYKPAAVYVNSDYEPAAITRDLLI 116

Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPA 181
           +  LQ   V   +F D V+     I+ +    Y VYTP++   +  L +   L S     
Sbjct: 117 QGILQQYEVDFLTFKDQVIFEKDEIVKNDGLPYTVYTPYKNKWLTTLEEKLPLPSYNSEN 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240
           +          +P   D  F      FP           K     +  Y + RDIP+++ 
Sbjct: 177 LLNNLRQADYTLPSLQDLGFSLSTIPFP----------EKTFFTGIADYADTRDIPSLEN 226

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS L  +L  G +S R+   R                 ++L+EL+WREF+   +  +P 
Sbjct: 227 GTSHLGVHLRFGTISIRKLVERAYPSQNK----------TYLHELVWREFFMMCLWHFPH 276

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + + +    + I W  +    +AW  G TG+P++DA MR+LNT G+MHNR+RM+TASF
Sbjct: 277 -TVNQAYYSKYDHIRWENNLAHFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTASF 335

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LL+DWR GE YF  +LLD D ++N G WQWAA  G D+ PYFRIFNPTIQ K+FDP
Sbjct: 336 LCKHLLIDWRWGEAYFAQKLLDYDQSANIGNWQWAAGCGMDAAPYFRIFNPTIQTKKFDP 395

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +  +I+ W+PE  +                     YP PIV+H  A    L +Y A  + 
Sbjct: 396 KFVYIKKWVPEFQDFS-------------------YPSPIVEHAWARDRALARYKAGFEH 436

Query: 481 S 481
           S
Sbjct: 437 S 437


>gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis]
 gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis]
          Length = 541

 Score =  346 bits (888), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 138/508 (27%), Positives = 204/508 (40%), Gaps = 38/508 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISA 55
           M A     VH  W R  LR+ DN AL    +++ A      V  +FI  P       + A
Sbjct: 1   MSAKRRTLVH--WFRKGLRVHDNPALSQIFNDARASPEKFYVRPIFILDPGILDWMQVGA 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  F+  SL+ + K L +        +    D   E  + + +Q     L +    E  
Sbjct: 59  NRWRFLQQSLVDLDKKLKELNSRLYIVRGKPVDVFPELFERWNVQL----LTFESDIEPY 114

Query: 116 EVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            ++RD  ++K   +H V   +     +  P  ++   L    V       ++  L    +
Sbjct: 115 ALQRDTTVQKIASEHGVKVDTHCSHTIYNPELVIAKNLGKAPVTYQKFLGIVDKLKLPKV 174

Query: 175 RSLPVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
            ++P        P+                + +    P +     FP GE  AL  +   
Sbjct: 175 LAVPEGLPDGIKPIADEFEAVDSCVYDCPTLDQLVKRPQELGVNKFPGGETEALRRMEAS 234

Query: 223 C--KEKVYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
              +  V  + +    P      T+ LSPYL  G LS R    RLKE  V    K     
Sbjct: 235 LIDENWVAAFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLLHERLKEILV-RKPKHSKPP 293

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S + +L+WREFY  + A  P+         +  +I W K    L+AW  G TG+P IDA
Sbjct: 294 VSLVGQLLWREFYYTVAAADPNFDRMLG-NAYCLQIPWQKQPDHLEAWTHGRTGYPFIDA 352

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S
Sbjct: 353 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEDGQRVFEQLLLDQDWALNAGNWMW-LS 411

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451
                  YFR+++P   GK+ DP G +IR ++PEL   P   I+ P              
Sbjct: 412 ASAFFHQYFRVYSPVAFGKKTDPTGAYIRKYVPELAKYPAGCIYEPWKATLSAQREYGCV 471

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           L ++YP  IV+H       + +  AA K
Sbjct: 472 LGVDYPHRIVNHDIVHKENIKRMSAAYK 499


>gi|300774220|ref|ZP_07084087.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300758899|gb|EFK55728.1| possible deoxyribodipyrimidine photo-lyase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 437

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 157/481 (32%), Positives = 227/481 (47%), Gaps = 49/481 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYA 63
           +A+   + W R DLR+ DN AL+ A  NS+A V  VFI       R    +  +  FIY 
Sbjct: 2   SAVPTVIFWFRRDLRLQDNHALFRAL-NSEAAVQPVFIFDSTILTRLDDPADARVTFIYQ 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L  +Q+ L   G   +    + + +     +    +   T ++ N  YE   + RD L+
Sbjct: 61  QLQLLQEQLKPYGSSIR----TYYGEPATVWEEIYEEYTPTAVYVNSDYEPAAITRDLLV 116

Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPA 181
              LQ  +V   +F D V+     I+ +    Y VYTP++   +  L +   L S     
Sbjct: 117 RGILQQYKVDFNTFKDQVIFEKAEIVKNDGLPYTVYTPYKNKWLTTLEEQLPLPSYTSEN 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240
           +          +P   D  F      FP           K     +  Y + RDIP ++ 
Sbjct: 177 LLKNLRQASYALPSLQDLGFSLSTIPFP----------EKTFFTAIADYADTRDIPGLEN 226

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS L  +L  G +S R+   R                 ++L+ELIWREF+   +  +P 
Sbjct: 227 GTSHLGIHLRFGTISIRKLVERAYPSQNK----------TYLHELIWREFFMMCLWHFPH 276

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             +   +    + I W  +    +AW  G TG+P++DA MR+LNT G+MHNR+RM+TASF
Sbjct: 277 -TVNHAYYSKYDHIRWENNVAHFEAWCNGQTGYPLVDAGMRELNTTGFMHNRVRMLTASF 335

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LL+DWR GE YF  +LLD D ++N G WQWAA  G D+ PYFRIFNPT+Q K+FDP
Sbjct: 336 LCKHLLIDWRWGEAYFAQKLLDYDQSANIGNWQWAAGCGMDAAPYFRIFNPTLQTKKFDP 395

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           Q  +I+ W+PE  +                     YP PIV+H  A    L +Y A  + 
Sbjct: 396 QFVYIKKWVPEFQDFS-------------------YPPPIVEHAWARDRALARYKAGFEH 436

Query: 481 S 481
           S
Sbjct: 437 S 437


>gi|118496971|ref|YP_898021.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           novicida U112]
 gi|194324200|ref|ZP_03057974.1| deoxyribodipyrimidine photolyase family protein [Francisella
           tularensis subsp. novicida FTE]
 gi|118422877|gb|ABK89267.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
 gi|194321647|gb|EDX19131.1| deoxyribodipyrimidine photolyase family protein [Francisella
           tularensis subsp. novicida FTE]
          Length = 499

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 126/483 (26%), Positives = 211/483 (43%), Gaps = 31/483 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
              L++ G            D++E  +    Q  +  ++ +++   N   +RD  LEK  
Sbjct: 59  NTELTRLGQPLILM----IGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I              ++ H     K    + K + + +V+A  +   +   +   P
Sbjct: 115 KQNNIVWHQPYQ-----NGVVRHLADRDKWALVWHKRVSEKIVEAPNKLKFICENQTKIP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
              S         +         G   AL IL  F  ++   Y ++   P  A +  S+L
Sbjct: 170 TAES-----IGLEYDNCYKRQKGGRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLI-------KPKSGAFSWLNELIWREFYRHLMAFY 298
           SPY++ G +S R+ +    +   ++ +       K  S   S+L+ L W   +   +   
Sbjct: 225 SPYIAFGAISIREVYQLANQRKKEIKVSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PS+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  
Sbjct: 285 PSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    
Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G F R WLPEL NV  + IH P  WL+K++ +++YP PI+D K+A     +  Y  +
Sbjct: 403 DPNGEFTRRWLPELENVSNENIHTP--WLEKHN-AIDYPDPIIDEKQARKFAADNIYKIR 459

Query: 479 KQS 481
           K S
Sbjct: 460 KSS 462


>gi|327282060|ref|XP_003225762.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
          Length = 530

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 132/495 (26%), Positives = 202/495 (40%), Gaps = 33/495 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V + W R  LR+ DN AL AA  NS A++  +FI  P   +   +S  +  F+  SL  +
Sbjct: 4   VSIHWFRKGLRLHDNPALLAAMKNS-AEIYPIFILDPWFPKNMQVSINRWRFLIESLKDL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            +SL +        +        E       + +VT+L +    E    R  +++    +
Sbjct: 63  DESLKKLNSRLFVVRG----RPAEVFPELFTKWKVTRLAFEVDTEPYARRDAEVVRLAAE 118

Query: 129 HRVICKSFDDSVLL------------PPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           H V         L              P +       +  +  P +      L       
Sbjct: 119 HGVQVIQKVSHTLYDTERIIVENSGKAPLTYTRLQTLVASLGPPKQPVPAPKLEDMKDCC 178

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQR 234
            PV         TPS        P  A   ++P GE  AL  L    K   +   + +  
Sbjct: 179 TPVKEDHDLEYGTPS-YEELGQDPKTAGPHLYPGGETEALARLDLHMKRTSWVCNFKKPE 237

Query: 235 DIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
             P      T+ LSPY+  G LS R  W +L E +     K      S   +L+WREF+ 
Sbjct: 238 THPNSLTPSTTVLSPYVKFGCLSVRMFWWKLAEVYQGR--KHSDPPVSLHGQLLWREFFY 295

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
              A  P+    +   P   +++W+ +   L+AW++G TG+P IDA M QL T GW+H+ 
Sbjct: 296 TAGAGIPNFDRMEN-NPVCVQVDWDNNQEYLRAWREGQTGYPFIDAIMTQLRTEGWIHHL 354

Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
            R   A FL + DL + W  G++ F   LLD D + N   WQW  S       +FR+++P
Sbjct: 355 ARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAANWQW-LSASAFFHQFFRVYSP 413

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKK 465
              GK+ D  G +I+ +LP L      YI+ P              +  +YP PIV+H+K
Sbjct: 414 VTFGKKTDKNGEYIKKYLPFLRKFSNDYIYEPWKAPRSLQERAGCIIGQDYPKPIVEHEK 473

Query: 466 ACHHTLNQYYAAKKQ 480
                L +  AA  +
Sbjct: 474 VYKRNLERMKAAYAR 488


>gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster]
          Length = 540

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 130/505 (25%), Positives = 200/505 (39%), Gaps = 36/505 (7%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58
            +  S  + W R  LR+ DN AL     A + +  K  V  +FI  P       + A + 
Sbjct: 2   DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRW 61

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  +L  +   L +        +        E         RV  L +    E   V 
Sbjct: 62  RFLQQTLEDLDNQLRKLNSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPYSVT 117

Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFRKAL 165
           RD  ++K  +   V  ++     +  P  +                  + ++  P    +
Sbjct: 118 RDAAVQKLAKAEGVRVETHCSHTIYNPELVKAKNLGKAPITYQKFLGIVEQLKVPKVLGV 177

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
            + L +           + +       I +    P +     FP GE  AL  + +  K+
Sbjct: 178 PEKLKKMPTPPKDEVEQKDSAAYDCPTIKQLVKRPEELGPNKFPGGETEALRRMEESLKD 237

Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           +++   + +    P      T+ LSPYL  G LS R    +LKE  +    K      S 
Sbjct: 238 EIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 296

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + +L+WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MR
Sbjct: 297 IGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMR 355

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S   
Sbjct: 356 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 414

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL 454
               YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  
Sbjct: 415 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPATCIYEPWKASLVDQRAYGCVLGT 474

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479
           +YP  IV H+      + +  AA K
Sbjct: 475 DYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|328675520|gb|AEB28195.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
          Length = 499

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 132/483 (27%), Positives = 215/483 (44%), Gaps = 31/483 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLRI DN AL  A    D  V+ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQVVWFKRDLRINDNLALSLASEKGD--VLPLYIIEPELWQQPDMSYRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
              L++ G            D++E  +    +  V  ++ + +   N   +RD  LEK  
Sbjct: 59  NTELTKLGQSLIIM----VGDAVEIFEQLIQKYSVKNIWSHEETWNNWTYQRDIKLEKFF 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I              ++       K    + K + + L++A      +   +   P
Sbjct: 115 KQNNITWHQPYQ-----NGVVRCLADRDKWALLWHKRMSEKLIKAPTELKFICENQTKIP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
            T  N+   +D  ++        G   AL IL  F  E+   Y ++   P  A +  S+L
Sbjct: 170 -TAENLGLEYDNSYKR----QKGGRIRALRILDSFLYERGCGYTKEMSSPVTAFKSCSRL 224

Query: 246 SPYLSIGVLSPRQCWN-------RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           SPY++ GV+S ++ +         +K+  +    K  S   S+L+ L W   +   +   
Sbjct: 225 SPYIAFGVISIKEVYQLANQRKNEIKDSSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PS+        + +  +   +    +AWK G TG+P+IDA MR L   GW++ R+R +  
Sbjct: 285 PSIEYKNLHPAYNQLRKEPINKQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWRI   Y      D +   +    Q    +G   +   RI+NP  Q    
Sbjct: 345 SFASYHLWLDWRITSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G FIR W+PEL NV  + IH P  WL+K++ +++YP PIVD K+A     +  Y  +
Sbjct: 403 DPNGEFIRRWVPELENVTDENIHTP--WLEKHN-AVDYPDPIVDEKQARKFAADNVYKIR 459

Query: 479 KQS 481
           K S
Sbjct: 460 KNS 462


>gi|319949517|ref|ZP_08023567.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4]
 gi|319436807|gb|EFV91877.1| Deoxyribodipyrimidine photo-lyase [Dietzia cinnamea P4]
          Length = 466

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 156/483 (32%), Positives = 229/483 (47%), Gaps = 26/483 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M + ++W R DLR++D+ AL AA    D +V+ VF+  P    +   +  ++  + AS+ 
Sbjct: 1   MGISILWFRRDLRLSDHPALLAAVEAGD-EVLPVFVRDPALLSR---AGARADRMAASIA 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +       G            D    +          ++  +R+      RRD  +   
Sbjct: 57  ALS---GDIGGALVVRTG----DPARVIPGLAALTGAREVHVSRESTPYGRRRDGRVRAA 109

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLPVPAI 182
           L+              + PG +LN + + Y+V+TPF +A  ++         R  P  A+
Sbjct: 110 LEADGRRLVETGSPYAVGPGRVLNGSGRPYQVFTPFSRAWREHGWPEPGRRPRDDPWAAM 169

Query: 183 RLTG-PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                P    +                  GE  AL   R F ++ + +Y +QRD P +  
Sbjct: 170 PAGELPGDDGDGWGRDTAGGAVRGAAGDAGEAAALARWRAFLEDDLEHYGQQRDRPDLDT 229

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LS  L  G + PR     L             GA  ++ EL WREFY  ++   P  
Sbjct: 230 TSRLSAPLKYGEIHPRTILADLAAH----PAADGEGARRFVTELAWREFYADVLWHQPRS 285

Query: 302 CMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
              +        + +++      L++AW++G TGFP +DA MRQL   GWMHNR+RM+TA
Sbjct: 286 AW-RDLRDALSGMPYDRGPEVNDLVEAWRRGRTGFPFVDAGMRQLVAQGWMHNRVRMVTA 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFLVKDL V W +G  +F+  LLDGDLASNN GWQW A TG D+ P+FR+FNP  QG+RF
Sbjct: 345 SFLVKDLHVWWPVGARHFLDHLLDGDLASNNHGWQWVAGTGTDASPFFRVFNPVTQGQRF 404

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G +IR W+PEL ++P    H P  W D +D    YP  IVDH +     L +Y   +
Sbjct: 405 DPDGDYIRRWVPELRHLPGAAAHEPWLWPDGHDHG--YPERIVDHAEERLEALRRYDVVR 462

Query: 479 KQS 481
             S
Sbjct: 463 NGS 465


>gi|123965553|ref|YP_001010634.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515]
 gi|123199919|gb|ABM71527.1| putative DNA photolyase [Prochlorococcus marinus str. MIT 9515]
          Length = 478

 Score =  345 bits (886), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 161/484 (33%), Positives = 233/484 (48%), Gaps = 29/484 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLRI DN AL  A   S+A + + +I   + + Q   +  ++ F+  SL ++ +
Sbjct: 7   LFWHRKDLRIYDNNALSKAFSLSNA-ITSTYIFD-QNYSQDFNANSRAWFLGNSLQELSR 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
           +    G      +     + +  +           + +N+  E  E+ RD  ++  L+  
Sbjct: 65  NWETLGSRMIIDE----GNPLTLIPKLAQLIDAKFVAWNKAIEPYEINRDLEIKNTLKKF 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           ++      D +LL P  I   + + Y VY PF K L   L     +       +L     
Sbjct: 121 KIEIIELWDHLLLEPSQIHTGSNKPYTVYGPFYKKLKSKLQLLTSKKNLNNIGKLKDLEI 180

Query: 190 PSNIPRFFDYPFQAIDPMF-------------PIGEQNALHILRKFC-KEKVYYYVEQRD 235
                +  D     ++                  GE  A  +L +F  ++K+  Y   RD
Sbjct: 181 GIKESQKIDSSRLILEKFIKKVNFDGINLCPCKPGEIAAEKLLDQFINQDKIGSYASSRD 240

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNR-LKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            P   GTS LS  L  G +S R+ WN  L  +  +     K    +W  EL+WREFY+H 
Sbjct: 241 FPDQNGTSFLSASLRFGTISIRKVWNSTLFTDLKNKNNHNKISIETWQKELVWREFYQHC 300

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +P +  G P+    +   W  +      W  G TG PIIDAAMRQLN+ GWMHNR R
Sbjct: 301 LFHFPELEKG-PYRKKWDHFPWQNNHEWFDRWSNGETGVPIIDAAMRQLNSTGWMHNRCR 359

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MI ASFLVKDL+ +W++GEE FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  Q
Sbjct: 360 MIVASFLVKDLICNWQMGEEKFMKVLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYTQ 418

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
            K+FDP   +I+ W+PEL+ VP + I +   S L+KN    NY   IV+H        + 
Sbjct: 419 TKKFDPICKYIKFWIPELSKVPNKDILNGEISDLEKN----NYYGAIVNHNTQQRLFKDL 474

Query: 474 YYAA 477
           Y   
Sbjct: 475 YAHI 478


>gi|213613247|ref|ZP_03371073.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 339

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 160/342 (46%), Positives = 225/342 (65%), Gaps = 4/342 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1   MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QYE NE +RD  +EK 
Sbjct: 61  ALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P IR++G
Sbjct: 121 LPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSG 179

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            ++    P   +YP QA D  +FP+ E   +  LR FC +    Y  +RD PA+ GTS+L
Sbjct: 180 ALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDGTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G LSPRQC +RL  E    L         WLNELIWREFYRHLM +YP++C  +
Sbjct: 240 SASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLNELIWREFYRHLMTWYPALCKHQ 297

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           PFI WT+++ W ++ H  QAW++G TG+PI+DAAMRQLN  G
Sbjct: 298 PFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATG 339


>gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
 gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
 gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
 gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
 gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster]
          Length = 540

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 129/505 (25%), Positives = 200/505 (39%), Gaps = 36/505 (7%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58
            +  S  + W R  LR+ DN AL     A + +  K  V  +FI  P       + A + 
Sbjct: 2   DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGANRW 61

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  +L  +   L +        +        E         RV  L +    E   V 
Sbjct: 62  RFLQQTLEDLDNQLRKLNSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPYSVT 117

Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFRKAL 165
           RD  ++K  +   V  ++     +  P  ++                 + ++  P    +
Sbjct: 118 RDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGV 177

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
            + L             + +       + +    P +     FP GE  AL  + +  K+
Sbjct: 178 PEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKD 237

Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           +++   + +    P      T+ LSPYL  G LS R    +LKE  +    K      S 
Sbjct: 238 EIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 296

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + +L+WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MR
Sbjct: 297 IGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMR 355

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S   
Sbjct: 356 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 414

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL 454
               YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  
Sbjct: 415 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGT 474

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479
           +YP  IV H+      + +  AA K
Sbjct: 475 DYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|136255185|ref|NP_001077099.1| cryptochrome 2 [Apis mellifera]
 gi|133754347|gb|ABO38437.1| cryptochrome 2 [Apis mellifera]
          Length = 570

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 120/500 (24%), Positives = 182/500 (36%), Gaps = 32/500 (6%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
                  + W R  LR+ DN +L      +      VF+  P       I   +  F+  
Sbjct: 17  DEGGKHTVHWFRKGLRLHDNPSLREGLAGASTF-RCVFVLDPWFAGSTNIGINKWRFLLQ 75

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L  +  SL +        +        + L     +   T L +    E     RD  +
Sbjct: 76  CLEDLDCSLRKLNSRLFVIRG----QPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNI 131

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPA 181
               +   I         L     I+          Y  F+  +               A
Sbjct: 132 SALCKELGISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASMDPPEPPVPTVTSA 191

Query: 182 IRLTGPVTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYV 231
              +                   +  F     + P++  GE  AL  L +  + K +   
Sbjct: 192 CVGSAYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVAS 251

Query: 232 EQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             R     Q      + LSPYL  G LS R  + +L + +    IK      S   +L+W
Sbjct: 252 FGRPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKK--IKKAVPPLSLHGQLLW 309

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF+       P+    +   P   +I W+K+   L  W  G TGFP IDA M QL   G
Sbjct: 310 REFFYCAATKNPNFDRMQG-NPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEG 368

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           W+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F
Sbjct: 369 WIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQFF 427

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPI 460
             + P   G++ DP G +IR +LP L N PT+YIH P +         K  +  +Y LP+
Sbjct: 428 HCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLNVQRAAKCIIGKDYSLPM 487

Query: 461 VDHKKACHHTLNQYYAAKKQ 480
           V+H K+    + +     +Q
Sbjct: 488 VNHSKSSRINIERMKQVYQQ 507


>gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi]
 gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi]
          Length = 538

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 131/502 (26%), Positives = 199/502 (39%), Gaps = 32/502 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISA 55
           M A     VH  W R  LR+ DN AL+     + A      V  +FI  P       + A
Sbjct: 1   MTAQRRTLVH--WFRKGLRVHDNPALFQIFEVARAAPEKFYVRPIFILDPGILDWMQVGA 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  F+  SL  + + L          +    D      + + +Q     L Y    E  
Sbjct: 59  NRWRFLQQSLSDLDQQLRALNTRLFVVRGKPVDIFPGLFERWQVQL----LTYETDIEPY 114

Query: 116 EVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            V RD  +++      V   +     +  P  ++   L    +       +++ L    +
Sbjct: 115 AVLRDAAVQQLAASQGVKVDTHCSHTIYNPELVIVRNLGKPPITYQKFLGIVEKLKLPKV 174

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKVY 228
            + P        P+  S+I  +         P       FP GE  AL  +     ++ +
Sbjct: 175 LNKPKKLPDGMQPLADSDIYDYPTLEQLVKRPEDLGINKFPGGESEALRRMEASLADEQW 234

Query: 229 --YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
              + + +  P      T+ LSPYL  G LS R    RL+E       K      S + +
Sbjct: 235 VAKFEKPKTAPNSLEPSTTVLSPYLKFGCLSARLFHERLQEILA-RQPKHSKPPVSLVGQ 293

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MRQL 
Sbjct: 294 LLWREFYYTVAAAEPNFDRMLG-NAYCLQIPWQEQPEHLEAWAHGRTGYPFIDAIMRQLR 352

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S      
Sbjct: 353 QEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASAFFH 411

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYP 457
            YFR+++P   GK+ DP+G +I+ ++PEL   P + I+ P              L  +YP
Sbjct: 412 QYFRVYSPVAFGKKTDPKGDYIKKYVPELAKYPAKCIYEPWKATLGEQRDYGCVLGSDYP 471

Query: 458 LPIVDHKKACHHTLNQYYAAKK 479
             IV+H       + +   A K
Sbjct: 472 HRIVNHDVVHKENIKRMSDAYK 493


>gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae]
 gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae]
          Length = 539

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 134/508 (26%), Positives = 202/508 (39%), Gaps = 38/508 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISA 55
           M A  A  VH  W R  LR+ DN AL      ++       V  +FI  P       + A
Sbjct: 1   MDAKHATLVH--WFRKGLRVHDNPALSQIFKVANTAPGKYFVRPIFILDPGILDWMQVGA 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  F+  +L  + + L + G      +        E         RV  L +    E  
Sbjct: 59  NRWRFLQQTLHDLDQQLQKLGSRLFVVRGKP----AEVFPRIFKSWRVELLTFETDIEPY 114

Query: 116 EVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            + RD  ++K  +   V  ++     +  P  ++   L    +       +++ L    +
Sbjct: 115 SLARDSAVQKLAKSDGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEKLKLPTV 174

Query: 175 RSLPVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
             LP        P                 + +    P       FP GE  AL  + + 
Sbjct: 175 LDLPEKLKEKVQPPKDDIEEKDSEAYDCPTMEQLVKRPEDLGPLKFPGGETEALRRMEES 234

Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            K++++   + +    P      T+ LSPYL  G LS R    RLKE  +    K     
Sbjct: 235 LKDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSSRLFHQRLKE-ILKRQTKHSQPP 293

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S + +++WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA
Sbjct: 294 VSLIGQMMWREFYYTVAAAEPNFDRMLG-NVYCLQIPWEEHPDHLKAWTYGQTGYPFIDA 352

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S
Sbjct: 353 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LS 411

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451
                  YFR+++P   GK+ DPQG +IR ++PEL   P   I+ P      +       
Sbjct: 412 ASAFFHQYFRVYSPVAFGKKTDPQGNYIRKYVPELAKYPAGCIYEPWKASLSDQRAYGCV 471

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           L  +YP  IV H+      + +  AA K
Sbjct: 472 LGTDYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
           Bound To Ds Dna With A T-T (6-4) Photolesion And
           Cofactor F0
          Length = 543

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 129/505 (25%), Positives = 200/505 (39%), Gaps = 36/505 (7%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58
            +  S  + W R  LR+ DN AL     A + +  +  V  +FI  P       + A + 
Sbjct: 25  DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 84

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  +L  +   L +        +        E         RV  L +    E   V 
Sbjct: 85  RFLQQTLEDLDNQLRKLNSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPYSVT 140

Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFRKAL 165
           RD  ++K  +   V  ++     +  P  ++                 + ++  P    +
Sbjct: 141 RDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGV 200

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
            + L             + +       + +    P +     FP GE  AL  + +  K+
Sbjct: 201 PEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKD 260

Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           +++   + +    P      T+ LSPYL  G LS R    +LKE  +    K      S 
Sbjct: 261 EIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 319

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + +L+WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MR
Sbjct: 320 IGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMR 378

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+HN  R   A FL + DL + W  G+  F   LLD D A N G W W  S   
Sbjct: 379 QLRQEGWIHNLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 437

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL 454
               YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  
Sbjct: 438 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGT 497

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479
           +YP  IV H+      + +  AA K
Sbjct: 498 DYPHRIVKHEVVHKENIKRMGAAYK 522


>gi|147906624|ref|NP_001081421.1| 6-4 photolyase [Xenopus laevis]
 gi|8809676|dbj|BAA97126.1| 6-4 photolyase [Xenopus laevis]
 gi|213625040|gb|AAI69683.1| 6-4 photolyase [Xenopus laevis]
 gi|213627768|gb|AAI69685.1| 6-4 photolyase [Xenopus laevis]
          Length = 526

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/494 (25%), Positives = 202/494 (40%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA  +  A++  +FI  P   +   +S  +  F+  +L  + 
Sbjct: 5   SIHWFRKGLRLHDNPALLAAMKDC-AELHPIFILDPWFPKNMQVSVNRWRFLIDALKDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQ 128
           ++L +        +        E       + +VT+L +    E    +RD  +EK   +
Sbjct: 64  ENLKKINSRLFVVRGKP----AEVFPLLFKKWKVTRLTFEVDIEPYSRQRDAEVEKLAAE 119

Query: 129 HRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLP-------VP 180
           H V       + L     I+  +  +    Y  F+  L            P         
Sbjct: 120 HDVQVIQKVSNTLYDIDRIIAENNGKPPLTYVRFQTVLAPLGPPKRPIKAPTLENMKDCH 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVY--YYVEQRD 235
               +       +P   +     +     ++P GE  AL  L    K   +   + +   
Sbjct: 180 TPWKSSYDEKYGVPTLEELGQDPMKLGPHLYPGGESEALSRLDLHMKRTSWVCNFKKPET 239

Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P      T+ LSPY+  G LS R  W ++ + +     K      S   +L+WREFY  
Sbjct: 240 EPNSLTPSTTVLSPYVKFGCLSARTFWWKIADIYQGK--KHSDPPVSLHGQLLWREFYYT 297

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
             A  P+    +   P   +++W+ +   L+AW +G TG+P IDA M QL T GW+H+  
Sbjct: 298 TGAGIPNFNKMEG-NPVCVQVDWDNNKEHLEAWSEGRTGYPFIDAIMTQLRTEGWIHHLA 356

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G++ F   LLD D + N G W W  S       +FR+++P 
Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWLW-LSASAFFHQFFRVYSPV 415

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
             GK+ D  G +I+ +LP L   P +YI+ P              +  +YP PIV+H   
Sbjct: 416 AFGKKTDKNGDYIKKYLPILKKFPAEYIYEPWKSPRSLQERAGCIIGKDYPKPIVEHNVV 475

Query: 467 CHHTLNQYYAAKKQ 480
               + +  AA  +
Sbjct: 476 SKQNIQRMKAAYAR 489


>gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba]
          Length = 545

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 127/493 (25%), Positives = 192/493 (38%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN  L A    +      +FI  P       +   +  F+   L  +  
Sbjct: 10  VHWFRKGLRLHDNPTLKAGLKGA-TTFRGIFIIDPWFAGSSNVGINKWRFLLQCLEDLDT 68

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +        +          L         T L + +  E     RD  +    +  
Sbjct: 69  TLRKLNGRLFVVRG----QPAHVLPQLFKTWGTTCLTFEKDPEPFGKVRDANITHIAREM 124

Query: 131 VICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I         L     I++       +     + ++  +    L + PV    +    T
Sbjct: 125 GIQVIIKTSHTLYKLEKIISKNGGKLPLTYKTFQNVLSTMEPPPLPASPVTVRDVGDAFT 184

Query: 190 PSN--------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDI-- 236
           P +        +P   +  F+  +    ++  GE  AL  L    + K +     R    
Sbjct: 185 PIDEDHDEKYGVPTLEELGFETENLAPSIWKGGESEALARLEHHLERKAWVASFGRPKMT 244

Query: 237 PAIQGTSQ--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           P     S+  LSPYL  G LS R+ +  L + +    IK      S   +L+WREFY   
Sbjct: 245 PQSLYPSRTGLSPYLRFGCLSARRFFAELNDLYRK--IKKSPAPLSLHGQLLWREFYYTA 302

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P     +   P   +I W+K++  L  W  G TGFP IDA M QL   GW+HN  R
Sbjct: 303 ATNNPKFDHMEG-NPICVQIPWDKNAEALAKWAHGRTGFPWIDAIMSQLRKEGWIHNVAR 361

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL V W  G + F   LLD D + N G W W  S  +    +F  + P  
Sbjct: 362 HAVACFLTRGDLWVSWEEGMKVFDELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVR 420

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT+YIH P +  +      K  +  +YP+P+VDH K  
Sbjct: 421 YGRKADPNGDYIRTYLPVLKNFPTKYIHEPWTAPENVQKQSKCVIGRDYPMPMVDHVKQS 480

Query: 468 HHTLNQYYAAKKQ 480
              L +     +Q
Sbjct: 481 QANLMRMKQVYQQ 493


>gi|296536181|ref|ZP_06898305.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
           49957]
 gi|296263491|gb|EFH09992.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
           49957]
          Length = 477

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 155/476 (32%), Positives = 224/476 (47%), Gaps = 30/476 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              L+WLR DLR  D+ AL+A        V+ VF+         G +AR   +++ SL  
Sbjct: 6   PPALLWLRQDLRTADHPALHAVA---GQPVLPVFVLDESDPWAPGGAAR--WWLHHSL-- 58

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             K+L +K              + + +          ++  +R YE    +RD  + K L
Sbjct: 59  --KALGEKLAALGAPLLLLRGKAADLIPELADALGAAEVHASRLYEPWARQRDAGIAKAL 116

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-------NLVQADLRSLPV 179
           + +         + LL P  +     + Y VYTPF +A++              LR+ P 
Sbjct: 117 EGQGRRLCLHSGATLLEPHRLRTGQGKPYSVYTPFARAVLALGDPPPPIPAPDRLRAAPP 176

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           P   L                  A    +  GE  A   LR F  +    Y   RD+P  
Sbjct: 177 PREGLALDALDLLPRPPEPDWAAAFPEYWTPGEDGAAARLRDFAAQAAQGYDRGRDLPGE 236

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             T++LSP+L  G +SPRQ W  + E           G  +WL E++WREF  H +   P
Sbjct: 237 DRTARLSPHLHWGEVSPRQAWQAVAE------GGKSGGHITWLKEILWREFAYHTLWHRP 290

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +    P  P   +  W  D  LLQAW++G TG+PI+DA +RQL   GWMHNR+RM+  S
Sbjct: 291 ELP-DTPLRPEFAEFPWQPDDTLLQAWQRGRTGYPIVDAGLRQLWRHGWMHNRVRMVVGS 349

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
            LVK LL  W+ G  +F   L+D DLA+N+  WQW A +G D+ PYFRIFNP +QG++FD
Sbjct: 350 LLVKHLLQPWQQGSLWFWDTLVDADLAANSMNWQWVAGSGIDASPYFRIFNPILQGEKFD 409

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
           P+G ++RH++PEL  +P  ++H P              L  +YP PIVDH+     
Sbjct: 410 PEGRYVRHFVPELARLPDAWLHKPWQASPEMLRAAGLRLGHDYPAPIVDHEGGRKR 465


>gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster]
          Length = 540

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 128/505 (25%), Positives = 200/505 (39%), Gaps = 36/505 (7%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58
            +  S  + W R  LR+ DN AL     A + +  +  V  +FI  P       + A + 
Sbjct: 2   DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 61

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  +L  +   L +        +        E         RV  L +    E   V 
Sbjct: 62  RFLQQTLEDLDNQLRKLNSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPYSVT 117

Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFRKAL 165
           RD  ++K  +   V  ++     +  P  ++                 + ++  P    +
Sbjct: 118 RDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGV 177

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
            + L             + +       + +    P +     FP GE  AL  + +  K+
Sbjct: 178 PEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKD 237

Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           +++   + +    P      T+ LSPYL  G LS R    +LKE  +    K      S 
Sbjct: 238 EIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 296

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + +L+WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MR
Sbjct: 297 IGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMR 355

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S   
Sbjct: 356 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 414

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL 454
               YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  
Sbjct: 415 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGT 474

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479
           +YP  IV H+      + +  AA K
Sbjct: 475 DYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|254525755|ref|ZP_05137807.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9202]
 gi|221537179|gb|EEE39632.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9202]
          Length = 478

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 163/484 (33%), Positives = 234/484 (48%), Gaps = 29/484 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-QSHFIYASLLQVQ 69
           L W R DLRI DN+AL  A   S+A + + +I        H  +A  ++ F+  SL ++ 
Sbjct: 7   LFWHRKDLRIFDNQALNKAISLSNA-ITSTYIFDENY--SHDFNANSRAWFLGNSLQELG 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRLQ 128
            +  + G      +     D I  +           +F+N+  E  E+ RD K+ +K  +
Sbjct: 64  NNWHRMGSRLVIEKG----DPILIIPKLAKIIDAKFVFWNKSIEPYEINRDSKIKKKLKE 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV------------QADLRS 176
             +      D +L+ P  I +   + Y VY PF K L   +             Q     
Sbjct: 120 KNIQFIESWDHLLVEPSKIFSGNNKPYSVYGPFYKNLKSKMKFLGSYNQDKVICQFKDID 179

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEK-VYYYVEQR 234
             +   ++             +  F   +      GE  A  +L+ F  EK +Y Y   R
Sbjct: 180 NKLKENKIINSSDSVLNKFLKNIKFSGSNICPCRPGEVAAETLLKNFINEKKIYSYNSVR 239

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRH 293
           D+P+  GTS LS  L  G +S R+ WN       D      S    +W  EL+WREFY+H
Sbjct: 240 DLPSHIGTSFLSASLRFGTISIRKVWNATLNLNSDFESHENSLSIETWQKELVWREFYQH 299

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +  +P +  G PF    ++  W  ++   Q W +G TG PI+DAAMRQLN+ GWMHNR 
Sbjct: 300 CLFHFPELEQG-PFRKKWDQFPWINNNEWFQHWSKGETGVPIVDAAMRQLNSTGWMHNRC 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI ASFLVKDL+ +W++GE+ FM  L+DGDLA+NNGGWQW+AS+G D  P  RIFNP  
Sbjct: 359 RMIVASFLVKDLICNWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKP-LRIFNPYT 417

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           Q K+FDP   +I+ W+PEL+ V    I        +N+   NY  PIV+H        + 
Sbjct: 418 QAKKFDPICEYIKSWIPELSKVSNSDILNGEISNLENN---NYSKPIVNHNIQQRLFKSL 474

Query: 474 YYAA 477
           Y   
Sbjct: 475 YAEI 478


>gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni]
 gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni]
          Length = 546

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 136/508 (26%), Positives = 204/508 (40%), Gaps = 37/508 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISA 55
           M+A T  ++ + W R  LR+ DN AL      + A      V  +FI  P       + A
Sbjct: 1   MEAKTKATL-IHWFRKGLRVHDNPALMQIFTTAQAAPKKFYVRPIFILDPGILDWMQVGA 59

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  F+  +L  + K L Q        +       IE          V  L +    E  
Sbjct: 60  NRWRFLQQTLDDLDKQLRQLNSRLYVVRGKP----IEVFPRLFKSWNVELLTFESDIEPY 115

Query: 116 EVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
              RD  ++K  +   I  ++     +  P  ++   L    +      AL++ L  A +
Sbjct: 116 AQTRDAAVQKIAKAAGIKVETHCSHTIYNPELVIAKNLGKAPITYQKFLALVEKLKLAKV 175

Query: 175 RSLPVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
              P     LT P                +  +    P +    +FP GE   L  +   
Sbjct: 176 LDKPEKLDALTQPSRDELEQENDKVYDCPSQEQLVKKPNELGPNIFPGGETEGLRRMEDS 235

Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
             ++++   + +    P      T+ LSPYL  G LS R  + RLKE       K     
Sbjct: 236 LNDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSSRLFYQRLKEILAK-HPKHSQPP 294

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S + +++WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA
Sbjct: 295 VSLVGQVLWREFYYTVAAAEPNFDRMLG-NVYCLQIPWQEHPEHLEAWTYGRTGYPFIDA 353

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S
Sbjct: 354 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LS 412

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451
                  YFR+++P   GK+ DPQG +IR + PEL N P + I+ P     +        
Sbjct: 413 ASAFFHQYFRVYSPVAFGKKTDPQGNYIRKYCPELANYPNKQIYEPWLATLQAQREYGCV 472

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           L  +YP  IV H+      + +   A K
Sbjct: 473 LGEDYPHRIVKHELVHKENIKKMSEAYK 500


>gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
 gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
          Length = 1646

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 137/549 (24%), Positives = 200/549 (36%), Gaps = 76/549 (13%)

Query: 2    KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
             +  A    LVW R  LR+ DN AL     ++ A    VF+  P   +   + A +  F+
Sbjct: 1093 TSAAAKGRTLVWFRKALRVHDNPALSRGTLHATA-CQPVFVLDPWFCQPSRVGANRMRFL 1151

Query: 62   YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              SL  +   L  +G                 L   C + RV  + +    E     RD 
Sbjct: 1152 LQSLRDLDAQLRARGSSLLVLHGEPRV----VLPRACKKWRVDSVTWEHDIEPYAKIRDA 1207

Query: 122  LLEKRLQ-HRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +   L+   V C +     L     +L          Y  F K + +            
Sbjct: 1208 AVRGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMGAPNAPIDAME 1267

Query: 180  P------------AIRLTGPVTPSNIPRFFDYPFQAI--DPMFPI--GEQNALH------ 217
                            + G      IP   D  ++ +  D  FP   GE   L       
Sbjct: 1268 KMPGSFASSDEETKALVQGVADAYGIPTLEDLGYEPLGDDEGFPGVGGETEGLRRLRLML 1327

Query: 218  -------ILRKFCKEKVYYY-----------------VEQRDIPAIQGTSQ--------- 244
                      K        +                    R       TS          
Sbjct: 1328 ARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDASTSGAEALMIPST 1387

Query: 245  --LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
              LSPY+  G +SPR  ++ L   + +L  K      S + +L+WREFY  + A   +  
Sbjct: 1388 TALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWREFYYLVAAGTKNFD 1447

Query: 303  MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
              +       +I W KD  L  AW+   TGFP IDAAM QL   GW+H+  R   A FL 
Sbjct: 1448 KMEG-NAICRQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLHHLARHAVACFLT 1506

Query: 363  K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            + DL + W  G + F   L+D D A NNG W W  S       YFR+++P    K++D  
Sbjct: 1507 RGDLFIHWEWGRDAFDRDLVDADWALNNGNWMW-LSCSAFFYQYFRVYSPIAFAKKYDKD 1565

Query: 422  GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT---LN 472
            G ++RH+LP L N+P++Y++ P              + ++YP PIVDH  A       + 
Sbjct: 1566 GQYVRHYLPVLKNMPSKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHSAASKRCVDDIA 1625

Query: 473  QYYAAKKQS 481
              YAA K +
Sbjct: 1626 TAYAAHKDA 1634


>gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
           Bound To Ds Dna With A T-T (6-4) Photolesion
          Length = 543

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 129/505 (25%), Positives = 201/505 (39%), Gaps = 36/505 (7%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58
            +  S  + W R  LR+ DN AL     A + +  +  V  +FI  P       + A + 
Sbjct: 25  DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 84

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  +L  +   L +        +        E         RV  L +    E   V 
Sbjct: 85  RFLQQTLEDLDNQLRKLNSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPYSVT 140

Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFRKAL 165
           RD  ++K  +   V  ++     +  P  ++                 + ++  P    +
Sbjct: 141 RDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGV 200

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
            + L             + +       + +    P +     FP GE  AL  + +  K+
Sbjct: 201 PEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKD 260

Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           +++   + +    P      T+ LSPYL  G LS R    +LKE  +    K      S 
Sbjct: 261 EIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 319

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + +L+WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MR
Sbjct: 320 IGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMR 378

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  RM  A FL + DL + W  G+  F   LLD D A N G W W  S   
Sbjct: 379 QLRQEGWIHHLARMAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 437

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL 454
               YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  
Sbjct: 438 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGT 497

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479
           +YP  IV H+      + +  AA K
Sbjct: 498 DYPHRIVKHEVVHKENIKRMGAAYK 522


>gi|259506660|ref|ZP_05749562.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
 gi|259165744|gb|EEW50298.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
          Length = 476

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 163/507 (32%), Positives = 222/507 (43%), Gaps = 60/507 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  +TA S  +VW R+DLRI DN AL  A       VI +FI   +Q R  G +AR    
Sbjct: 1   MSLSTA-SPTIVWFRDDLRIRDNAALAWAADRG--PVIGLFI-DEDQPRALGGAARWWR- 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              SL  +  +L+  G+           D +  L     +     + +NR+Y      RD
Sbjct: 56  -DRSLTLLVDALATHGVPLLRRSG----DPVVLLTEVVRETGAAAVTWNRRYHGPLRERD 110

Query: 121 KLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             ++ +L+ +     S    +L  P  + + A   YKVYTPF KA      ++  R    
Sbjct: 111 AEIKTQLREQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDP 170

Query: 180 PAIRLTGPVTPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
              +LTGP TP       D P       +      GEQ AL  L  F         Y + 
Sbjct: 171 MPAQLTGPDTPVADTGGIDAPDPFWAAEMATHCRPGEQAALDRLGDFLDRMRERGGYADG 230

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD  A   TS LSP+L  G +S  + W  +            + A  +  EL+WR+F  H
Sbjct: 231 RDEMARAVTSGLSPHLRFGEISVHRVWEEITAAAD-AGDIDATDAQVFRKELLWRDFAWH 289

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSH----------------------LLQAWKQGYT 331
            +   P +           +  W  D H                       L AW+ G T
Sbjct: 290 RLYALPDMATTN-VREQFNRFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAWRAGRT 348

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G P++DA MR+L   G MHNR RM+ ASFL K+L + WR GEE+F   L+D D ASN   
Sbjct: 349 GIPLVDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFN 408

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           WQWAA +G+D+ PYFRIFNP  Q ++FDP  T+IR W+PE                    
Sbjct: 409 WQWAAGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPEYG------------------ 450

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +  YP PIVD K++    L+ Y A K
Sbjct: 451 -TPEYPAPIVDLKESRREALDAYEAVK 476


>gi|332557576|ref|ZP_08411898.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
 gi|332275288|gb|EGJ20603.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
          Length = 471

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 140/474 (29%), Positives = 216/474 (45%), Gaps = 25/474 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L  A       +I +FI  PE      + A     +   +    +
Sbjct: 8   ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      ++  L++   +     + ++R +E     RD+ ++  L+  
Sbjct: 64  ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQA 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPA-IRLT 185
            I   S     +  P  +       Y+VYTPF KA+    V         LP PA   ++
Sbjct: 120 GIEAASHAGHTIFEPWEVETGQGGFYRVYTPFWKAVKDRPVAASFPPPARLPSPAEWPVS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   ++ R  +     + P   +GE  A   L +F    +  Y  +RD P    TS+L
Sbjct: 180 ERLASWDLGRAMNRGAAVVAPHLAVGEAAAAERLTRFMSGPLDRYAAERDRPDAPVTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +S R  W+           + ++GA  +L EL WREF  HL+   P +   +
Sbjct: 240 SENLTYGEISARSLWHAGMR----ARAEGRAGAEKFLQELAWREFGWHLLYHTPEIAR-R 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +    +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L K L
Sbjct: 295 NWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFRIFNP  Q ++FDP+  + 
Sbjct: 355 LTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414

Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           + +L E+   P     A     P SW  + D    YP P+V   +     L  Y
Sbjct: 415 QRFLAEIARRPGPEALAFLEAVPRSWGLRPDRC--YPRPVVGLAEGRERALAAY 466


>gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia]
 gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia]
          Length = 540

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 132/508 (25%), Positives = 204/508 (40%), Gaps = 38/508 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISA 55
           M A  +  VH  W R  LR+ DN AL     A + +  K  V  +FI  P       + A
Sbjct: 1   MDAQRSTLVH--WFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGA 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  F+  +L  +   L +        +        E         RV  L +    E  
Sbjct: 59  NRWRFLQQTLEDLDNQLRKLDSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPY 114

Query: 116 EVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFR 162
            + RD  ++K  +   V  ++     +  P  ++                 + ++  P  
Sbjct: 115 SLTRDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKV 174

Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
             + + L +           + +       + +    P +     FP GE  AL  + + 
Sbjct: 175 LGVPEKLKKMPTPPKDEVEQKDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEES 234

Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            K++++   + +    P      T+ LSPYL  G LS R    +LKE  +    K     
Sbjct: 235 LKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPP 293

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S + +L+WREFY  + A  P+         +  +I W K    L+AW  G TG+P IDA
Sbjct: 294 VSLIGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQKHPDHLEAWTHGRTGYPFIDA 352

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S
Sbjct: 353 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LS 411

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451
                  YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P      +       
Sbjct: 412 ASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLADQRAYGCV 471

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           L  +YP  IV H+      + +  AA K
Sbjct: 472 LGTDYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|296448539|ref|ZP_06890415.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b]
 gi|296253957|gb|EFH01108.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b]
          Length = 477

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 159/467 (34%), Positives = 237/467 (50%), Gaps = 33/467 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+TD     AA   + A ++A+FI   +     G +AR   +++ SL+ +  
Sbjct: 6   ILWFRRDLRLTD-NLALAAAATTGAPLVALFILDEDDDPPLGGAAR--WWLHHSLVSLTH 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L ++G+     +      S   L     +     +F++R YE   +RRD  +E  L+  
Sbjct: 63  DLRERGLSLTLRRGP----SAASLTRLVPETGARAVFWSRVYEPAALRRDGEIETMLRAS 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V  +SF  ++L  PG I +   + ++V+ PF +A    +     +  P        P +
Sbjct: 119 GVEAQSFSGALLFEPGEIRSAQGRAFRVFAPFWRAAQAIVAPGAPKPAPTRLRAAPAPRS 178

Query: 190 PSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                R  D+     +P         +  GE  A   L  F ++ V  Y   RD PA   
Sbjct: 179 E----RLEDWGLTPREPDWAGGLRDAWRPGESGARARLDAFVEDGVRDYAAARDFPAKDN 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S+LSP+L  G + PRQ W  +     +    P++   ++L EL WREF  H++  +PS+
Sbjct: 235 VSRLSPHLHWGEIGPRQVWRAI-----EGADAPRADIAAFLRELGWREFCHHILLDHPSL 289

Query: 302 CMGKPFIPWTEKIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               P  P   +  W +D   L +AW +G TG+P +DA MRQL   GWMHNRLRMI ASF
Sbjct: 290 PEA-PLDPDFARFPWAQDDGTLFRAWARGATGYPFVDAGMRQLWLTGWMHNRLRMIVASF 348

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+DWR GE +F   L+D DL+SN   WQWAA  G D+ PYFRIFNP +QG+++D 
Sbjct: 349 LVKHLLLDWREGERWFFDTLVDADLSSNAFNWQWAAGCGADAAPYFRIFNPVLQGEKYDA 408

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461
            G F+R ++PEL  +   YIH P +  ++        L   YPL I+
Sbjct: 409 DGAFVRRFVPELARLDAHYIHRPWTAPEQKLREAGVRLGETYPLAII 455


>gi|330835507|ref|YP_004410235.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
           Ar-4]
 gi|329567646|gb|AEB95751.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera cuprina
           Ar-4]
          Length = 433

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 146/472 (30%), Positives = 227/472 (48%), Gaps = 46/472 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQ 67
           + L   R DLR+ DN  L  A    D +V+ +FI  P Q       S     F+  SLL+
Sbjct: 2   ICLFLFRRDLRLEDNTCLIKALRECD-EVVPLFIIDPRQVEDNPYKSPFAIGFMIDSLLE 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L   G      +    +   +             ++ N  Y     +RD+ +++++
Sbjct: 61  LDQDLKTMGSRLHLLKGFPEEIIPKI--------NADAVYMNEDYTPFSRQRDERIKEKV 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + +++       +LL          + Y V+T F      ++    +R   V  ++  G 
Sbjct: 113 KGKLVTCE---DLLLTKKRFFLKEGKPYSVFTRFY----VDVKDKPVRRPEVNNLKNYGE 165

Query: 188 VTP-SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           +   +++    +  FQ     F  G + AL  L +    +   Y   R+ P + GT++LS
Sbjct: 166 MKDITDVKLLENLHFQRSS--FKGGRRAALDTLNR---AQTIDYS-LRNFPGLPGTTRLS 219

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  GVLSPR+ +  + EE                 +L WR+F+  L  + P V  G  
Sbjct: 220 PYLKFGVLSPREVYYSVNEEIR--------------RQLYWRDFFTLLAYYNPYV-FGHA 264

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           +    + + W  D++L  AW QG TG+PI+DA MR+LN  G+MHNR RMITA FLVK L 
Sbjct: 265 YKREYDCVPWVNDTNLFSAWTQGKTGYPIVDAGMRELNNTGFMHNRTRMITAFFLVKVLH 324

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDWR GE+YF ++L+D D + NNG WQW ASTG D    FRIFNP +Q K+FDP+  +I+
Sbjct: 325 VDWRWGEKYFATKLVDYDPSVNNGNWQWVASTGVDR--MFRIFNPWLQQKKFDPEAVYIK 382

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            W+PEL ++    IH  ++          YP PIV++ +        Y  ++
Sbjct: 383 EWVPELRDLSPADIHNVYALKV-----DGYPKPIVNYLEEVRKAREYYEKSR 429


>gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
           With A T-T (6-4) Photolesion
 gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
           Ds Dna
 gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
           Stranded Dna Containing A T(6-4)c Photolesion
 gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
           With A T-T (6-4) Photolesion And F0 Cofactor
 gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
           Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
 gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
           Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
          Length = 543

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 128/505 (25%), Positives = 200/505 (39%), Gaps = 36/505 (7%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58
            +  S  + W R  LR+ DN AL     A + +  +  V  +FI  P       + A + 
Sbjct: 25  DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 84

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  +L  +   L +        +        E         RV  L +    E   V 
Sbjct: 85  RFLQQTLEDLDNQLRKLNSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPYSVT 140

Query: 119 RDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFRKAL 165
           RD  ++K  +   V  ++     +  P  ++                 + ++  P    +
Sbjct: 141 RDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGV 200

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
            + L             + +       + +    P +     FP GE  AL  + +  K+
Sbjct: 201 PEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESLKD 260

Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           +++   + +    P      T+ LSPYL  G LS R    +LKE  +    K      S 
Sbjct: 261 EIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 319

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + +L+WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA MR
Sbjct: 320 IGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMR 378

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S   
Sbjct: 379 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 437

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSL 454
               YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P              L  
Sbjct: 438 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGCVLGT 497

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479
           +YP  IV H+      + +  AA K
Sbjct: 498 DYPHRIVKHEVVHKENIKRMGAAYK 522


>gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis]
 gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis]
          Length = 533

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 121/500 (24%), Positives = 206/500 (41%), Gaps = 32/500 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A+      + W RN LR+ DN AL  A   S   V  +++  P+  +   I   +  FI 
Sbjct: 2   ASKKTHQTVHWFRNGLRLHDNPALKEAFETSQT-VRPLYVLDPDVLKNGNIGVVRWRFIL 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +  +L +        +        E       + +++KL +         ++D  
Sbjct: 61  ESLADLDNNLKKLNSRLFVVRGRPS----EVFPKLFKEWKISKLTFEVDTTEPARKQDAE 116

Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           + K      V  +      L     I+N       +     ++++ +L         +  
Sbjct: 117 VLKIANKLGVDIEQRVSHTLYDLDRIVNKNGGTAPLTYKKFQSIVSSLGPPAAPLPAIDK 176

Query: 182 IRLTGPVTPSNIPRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVY- 228
             + G  TP+                  + P ++ + ++P GE  AL  L  + K++ + 
Sbjct: 177 KMVAGCNTPTTANHDKIYGVPTLEEIGQEVPEESREVLYPGGETEALERLEVYMKKEDWV 236

Query: 229 -YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
             + +    P      T+ LSPY++ G LS R  + RL E +     K      S   +L
Sbjct: 237 CKFEKPNTAPNSIEPSTTVLSPYMTYGCLSARLFYTRLAEIYAKKK-KHSQPPVSLHGQL 295

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WREF+       P+            ++ W+++   L AW +  TG+P IDA M QL  
Sbjct: 296 LWREFFTTAAYKTPNFNKM-VGNSLCLQVPWDQNDEYLAAWAEARTGYPYIDAIMTQLRR 354

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GW+H+  R   A FL + DL + W  G + F   L+D D   N G W W  S  +    
Sbjct: 355 EGWVHHLARHSVACFLTRGDLWISWEEGLKVFERLLIDHDWNLNAGNWMW-LSASSFFHA 413

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458
           YFR+++P   GK+ DP G +IR ++P+L+  P +YI+ P +            +  +YP 
Sbjct: 414 YFRVYSPVAFGKKTDPNGDYIRKYIPKLSRYPPKYIYEPWNAPLAVQEKAGCVIGRDYPC 473

Query: 459 PIVDHKKACHHTLNQYYAAK 478
           PIVDH K     +++   A+
Sbjct: 474 PIVDHNKVVTRNMSRMKEAR 493


>gi|254238599|ref|ZP_04931922.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719]
 gi|126170530|gb|EAZ56041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719]
          Length = 394

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 141/381 (37%), Positives = 208/381 (54%), Gaps = 6/381 (1%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
             + ++L+W R DLR TDN AL AA        +A+++ +P QWR+H  +  +  F   +
Sbjct: 2   NGLPMNLIWFRCDLRTTDNSALLAAA--DGRPCVALYLLSPAQWREHDDAPCKVDFWLRN 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q+ L+   I      C ++  + E +   C +  V  +  N++Y +NE RRD+ + 
Sbjct: 60  LGELQRQLAALNIPLLVRDCGHWRQAPEVIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLPVP 180
           +RL+ + +   S  D +   PGS+L      ++V++ FRK   + L QA           
Sbjct: 120 QRLREQGVAFHSHLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGVRPRPQPQ 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                      +    F  P  ++  ++P GE+ A   LR F  + +  Y E+RD PA+ 
Sbjct: 180 PPHALASDPLPDAVPAFPRPADSLRRLWPAGEEVAQERLRDFADQHLADYHERRDFPALP 239

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTSQLSPYL+ GVLSPRQC +             + GA +W+NEL+WREFY+H++  YP 
Sbjct: 240 GTSQLSPYLAAGVLSPRQCLDAALVANRGEFSGGQQGAATWINELLWREFYKHILVGYPR 299

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           V   +PF   TE + W +    L+AW+QG TG PIIDAAM QL   GWMHNRLRM+ A F
Sbjct: 300 VSRHRPFREETEALRWRQAPAELEAWQQGRTGIPIIDAAMSQLLATGWMHNRLRMVVAMF 359

Query: 361 LVKDLLVDWRIGEEYFMSQLL 381
           L K+LL+DWR GE +FM  L 
Sbjct: 360 LSKNLLIDWREGERWFMRHLN 380


>gi|299747808|ref|XP_002911220.1| photolyase [Coprinopsis cinerea okayama7#130]
 gi|298407687|gb|EFI27726.1| photolyase [Coprinopsis cinerea okayama7#130]
          Length = 633

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 161/502 (32%), Positives = 246/502 (49%), Gaps = 67/502 (13%)

Query: 1   MKATTAMS----VHLVWLR-NDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHG 52
           M+ T +        + W+R  DLR+ DN+AL  A   +      ++A+F+ +P+ +  H 
Sbjct: 57  MRNTVSTPLKSDCVVFWMRMTDLRVKDNRALARASQQAASDGVPLVALFVVSPQDFVAHD 116

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
            S+R+  F   +L+ ++  L++  I             +  +  +        +F N +Y
Sbjct: 117 RSSRKIDFTLRNLVSIKCRLAELHIPLHVATLPRRKTVVSEVIIFLDSIGCNHVFANIEY 176

Query: 113 EINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----- 166
           E++E+RRD  L  + +        + +  ++ PG I +   + Y VY+P+ +  +     
Sbjct: 177 EVDELRRDIELCSKAREISKQVSLYHNKSVVEPGIIQSKGGKGYAVYSPYARQWVSIVNS 236

Query: 167 ---QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY---------PFQAIDPMFPIGEQN 214
                L +A   +    A+R    + P  +     Y             +  ++P GE  
Sbjct: 237 HLSDYLEEAQDPAPNGAAVRSCPKIGPLFLSEIPSYVEGFVLDPEDSMIMRELWPEGEDA 296

Query: 215 ALHILRKFCK------------------------EKVYYYVEQRDIPAIQGTSQLSPYLS 250
           A  IL++F +                         ++  Y   RD      TS+LSPYLS
Sbjct: 297 ASQILQRFLQTKARASQLEARGPLNEGVTYDVKHNRISKYHTDRDRADKDTTSRLSPYLS 356

Query: 251 IGVLSPRQCWNRLKEE--FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
            GV+S R+    + +      L    K+GA  +++EL WR+FY  ++A YP + MG+PF+
Sbjct: 357 SGVISIREVLRAILKVTGAQQLNTDSKTGAGRFISELAWRDFYTDVLASYPRISMGRPFL 416

Query: 309 PWTEKIEWNK---------------DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                I W                 D+  L  WK+G TG PI+DAAMR LN +GW+HNR+
Sbjct: 417 EKYSGIIWENHQAPANSKDPAGTEMDAEALFRWKRGTTGVPIVDAAMRCLNKMGWVHNRM 476

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           RMI A +L K L++DWR+GE YFM  L+DGDLASNNGGWQW+ASTG D  PYFRIFNP  
Sbjct: 477 RMIVAMYLTKHLMIDWRVGERYFMQTLVDGDLASNNGGWQWSASTGVDPCPYFRIFNPHT 536

Query: 414 QGKRFDPQGTFIRHWLPELNNV 435
           Q  + DP G FIRHW+PEL N+
Sbjct: 537 QSLKADPTGDFIRHWVPELRNL 558


>gi|156546843|ref|XP_001606405.1| PREDICTED: similar to cryptochrome 2 [Nasonia vitripennis]
          Length = 648

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 123/498 (24%), Positives = 189/498 (37%), Gaps = 32/498 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
                + W R  LR+ DN +L      +      VF+  P       +S  +  F+   L
Sbjct: 82  GKKHTVHWFRKGLRLHDNPSLREGLAGASTF-RCVFVLDPWFAGSANVSINKWRFLLQCL 140

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + +SL Q        +        + L     +   T L +    E     RD+ +  
Sbjct: 141 EDLDRSLHQLNSRLFVIRG----QPADALPKLFREWGTTSLTFEEDPEPYGRVRDENITT 196

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             +   +         L     I+        +     + +I  +   +  +  V A  +
Sbjct: 197 LCKELGITVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVIARMDPPEYPAAAVTAACI 256

Query: 185 TGPVTPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
               TP          +P   +  F     + P++  GE  AL  L +  + K +     
Sbjct: 257 GSAYTPLKDDHDDFFGVPTLEELGFDTEGLMAPVWVGGETEALARLERHLERKAWVASFG 316

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           R     Q      + LSPYL  G LS R  + +L + +    IK      S   +L+WRE
Sbjct: 317 RPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLADLYKK--IKKTIPPLSLHGQLLWRE 374

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+       P+        P   +I W+K+   L  W  G TGFP IDA M QL   GW+
Sbjct: 375 FFYCAATNNPNFDRMHG-NPICVQIPWDKNVVALSKWANGQTGFPWIDAIMTQLREEGWI 433

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H   R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  
Sbjct: 434 HQLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSINAGMWMW-LSCSSFFQQFFHC 492

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVD 462
           + P   G++ DP G +IR +LP L N PT+YIH P           K  +   Y LP+V+
Sbjct: 493 YCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSVQRAAKCIIGQEYALPMVN 552

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H K+    + +     +Q
Sbjct: 553 HSKSSRINVERMKRVYQQ 570


>gi|254776317|ref|ZP_05217833.1| Phr protein [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 442

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 139/472 (29%), Positives = 213/472 (45%), Gaps = 34/472 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+W R DLR+ D+ AL AA  + +  V+A F+  P    Q     R+  F+  SL  +
Sbjct: 2   PALLWFRRDLRLHDHPALSAAADSDE--VLACFVLDPRL--QRSSGPRRLQFLGDSLRVL 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L  + +V +        +  + +         + +  +  +     RRD  +   L 
Sbjct: 58  RDELDGRLLVTRGRPDIRIPEIAKAI-------GASSVHVSEDFTPFGKRRDARVRAALA 110

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   +     L+ PG +       Y+V+TPF +       +   ++    A  L    
Sbjct: 111 S-VPLVATGSPYLVAPGRVTKPDGSPYQVFTPFLRRWRDTGWRPPAKTGAASARWLDPAR 169

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                    + P          GE  A +  + F    +  Y + R  P I+GTS++S +
Sbjct: 170 LGITAC---EIPDPGATLDLAAGEAAARNQWKTFVDNGLANYADDRHRPDIEGTSRMSAH 226

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           +  G + PR     L            +GA ++L EL +R+FY  ++   P+    + + 
Sbjct: 227 VKFGTIHPRTLVADL--------DLRAAGARTYLRELAFRDFYADVLHHRPASAW-RNWN 277

Query: 309 PWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              + I  +         +AWK G TGFP +DA MRQL   G+MHNR+RM  ASFLVKDL
Sbjct: 278 SAFDAIRTDTGDEAGRRFEAWKAGETGFPFVDAGMRQLRQTGFMHNRVRMTVASFLVKDL 337

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W+ G  +F+ QL+DGDLA+N  GWQW A  G D+ PYFR+FNP  QG++FDP G +I
Sbjct: 338 HLPWQWGAHWFLQQLVDGDLANNQHGWQWCAGCGTDAAPYFRVFNPAAQGEKFDPSGDYI 397

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           R W+PEL      +       L   +    Y  PIVDH       L +Y + 
Sbjct: 398 RRWVPELRCADDPH-------LRTGERPPGYLAPIVDHATERAEALRRYRSM 442


>gi|297598791|ref|NP_001046243.2| Os02g0204400 [Oryza sativa Japonica Group]
 gi|306756329|sp|Q0E2Y1|UVR3_ORYSJ RecName: Full=(6-4)DNA photolyase
 gi|255670698|dbj|BAF08157.2| Os02g0204400 [Oryza sativa Japonica Group]
          Length = 551

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 131/500 (26%), Positives = 210/500 (42%), Gaps = 31/500 (6%)

Query: 12  VWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHFI 61
           VW R  LR+ DN AL  A    + A++  VF+  P   R    +           +  F+
Sbjct: 17  VWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFL 76

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L + G      +  +  D    + +      + KL +    E   + RDK
Sbjct: 77  LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136

Query: 122 LLEK-RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            +        +   S     L  P  I+  +  +    Y  F     +           +
Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIMEEYSEL 196

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
           P +  TG      +PR  +  +  I      +F  GE  AL  +R+   +K +   + + 
Sbjct: 197 PPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDKEWVAKFEKP 256

Query: 234 RDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           +  P+      T+ LSPYL  G LS R  ++ +++ +     K  +   S   +L+WR+F
Sbjct: 257 KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTK-KHTNPPVSLTGQLLWRDF 315

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  +    P+    K      ++I W ++  L  AW+ G TG+P IDA M QL   GWMH
Sbjct: 316 FYTVAFGTPNFDQMKG-NKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMH 374

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G + F   L+D D A NNG W W  S  +    Y RI+
Sbjct: 375 HLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFFYQYHRIY 433

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           +PT  GK++DP G +IRH++P L ++P +YI+ P +            +  +YP P+VDH
Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493

Query: 464 KKACHHTLNQYYAAKKQSLL 483
             A          A   + L
Sbjct: 494 AIASKECKKMMGEAYASNRL 513


>gi|125590574|gb|EAZ30924.1| hypothetical protein OsJ_15004 [Oryza sativa Japonica Group]
          Length = 697

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 139/485 (28%), Positives = 225/485 (46%), Gaps = 23/485 (4%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
            DLR+ DN A  AA   +  +V+  ++  PE+   +        ++  SL  +  SL + 
Sbjct: 23  RDLRVEDNPA-LAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDASLRRL 81

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQHRVICK 134
           G      + S   D++  L         T+LF+N  Y+   + RD  L++      +I +
Sbjct: 82  GAGKLVTRRSA--DAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGIIVQ 139

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-PVTPSNI 193
           SF+  +L  P  +++   Q + ++ PF    +          LP   I      + PS+ 
Sbjct: 140 SFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLSMCPSDD 199

Query: 194 PRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             F D   +  + +    +  G QNA   L  F    + +Y   R       TS LSPYL
Sbjct: 200 LIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLSPYL 259

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYPSVCMGK 305
             G LS R+ ++ ++ + +    +    A      +L  +  RE+ R+L   +P     K
Sbjct: 260 HFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHP-CSHEK 318

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L
Sbjct: 319 PLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVL 378

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G +FDP G ++
Sbjct: 379 QLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYV 438

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC-HHTLNQYYA 476
           R WLPEL  +PT++IH P             +L  NYPLPIV  D   A     L++ + 
Sbjct: 439 RRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEALSEMWQ 498

Query: 477 AKKQS 481
            +  S
Sbjct: 499 LEAAS 503


>gi|296140720|ref|YP_003647963.1| deoxyribodipyrimidine photo-lyase [Tsukamurella paurometabola DSM
           20162]
 gi|296028854|gb|ADG79624.1| Deoxyribodipyrimidine photo-lyase [Tsukamurella paurometabola DSM
           20162]
          Length = 451

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 144/471 (30%), Positives = 220/471 (46%), Gaps = 24/471 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W R DLR+ DN AL A    +   V+ + +  P     H  +  +  +  A++L +
Sbjct: 2   TVIWWARRDLRLGDNPALCA--AAAAGPVLPLVVLDPALL--HDGARPREAWYAANVLAL 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
              L           C      +E + +  L+   T +  +R+      RRD  +  RL 
Sbjct: 58  DDQLG-------GELCLRSGSPVEEVLAVALETGATAVHVSRETTPFGSRRDASIRDRLA 110

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +H +          + PG I+      Y+V+  F++A  ++   A  +            
Sbjct: 111 EHGIDWVETGSPYAVTPGRIVKSDGTPYRVFGAFQRAWREHRWPAPAQLPDRVHWARPPA 170

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              +           +  P+ P GE  AL    +F  +++  Y + RD P    +S+LSP
Sbjct: 171 GGAAERRSLAAMVEASPVPLPPAGESAALDRWHRFRTDELARYAQDRDRPDHDASSRLSP 230

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL +G + PR     L             GA  + +EL WR+FY  ++  +P   +    
Sbjct: 231 YLKVGAVHPRTLLTGL---------GSSDGAAKYASELCWRDFYADVLYHHPD-SLRTDL 280

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 +E+        AW++G TG+P++DA MRQL T GWMHNR+RM+ ASFL KDL V
Sbjct: 281 TKALAGLEYTPPGADFTAWQRGATGYPLVDAGMRQLRTEGWMHNRVRMVVASFLSKDLHV 340

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W  G  +F+  LLDGD ASN  GWQW A TG D+ PYFR+FNPT Q ++FDP+G ++R 
Sbjct: 341 WWPHGAAHFLDLLLDGDPASNAHGWQWVAGTGTDAAPYFRVFNPTTQAEKFDPRGDYVRR 400

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++PEL ++      AP    D    +  YP PIVDH +    TL +Y   +
Sbjct: 401 YVPELRHLDGAAALAPWKHTD--GYAHGYPAPIVDHAEERAVTLARYGTVR 449


>gi|254372340|ref|ZP_04987831.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570069|gb|EDN35723.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3549]
          Length = 499

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 128/483 (26%), Positives = 215/483 (44%), Gaps = 31/483 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
              L++ G            D++E  +    +  +  ++ +++   N   +RD  LEK  
Sbjct: 59  NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNNWTYQRDIKLEKFF 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I              ++       K    + + + + +++A  +   +   ++  P
Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDKWALLWHQRMSEKIIRAPTKLKFICENQIKIP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
              S         +         G   AL IL  F  ++   Y ++   P  A +  S+L
Sbjct: 170 TAES-----LGLEYDNCYKRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224

Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           SPY++ GV+S ++ + +       +KE  V    K  S   S+L+ L W   +   +   
Sbjct: 225 SPYIAFGVISLKEIYQKANQRKNEIKESRVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PS+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  
Sbjct: 285 PSIEYENLHSAYDQLRTEQLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    
Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G FIR WLPEL NV ++ IH P  WL+K++ SL+YP PI+D K+A     +  Y  +
Sbjct: 403 DPNGEFIRRWLPELENVSSENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIYKIR 459

Query: 479 KQS 481
           K S
Sbjct: 460 KSS 462


>gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba]
 gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba]
          Length = 540

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 132/508 (25%), Positives = 206/508 (40%), Gaps = 38/508 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISA 55
           M A  +  VH  W R  LR+ DN AL     A + +  K  V  +FI  P       + A
Sbjct: 1   MDAQRSTLVH--WFRKGLRVHDNPALSQIFSAANAAPGKYFVRPIFILDPGILDWMQVGA 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  F+  +L  +   L +        +        +         RV  L +    E  
Sbjct: 59  NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKP----ADVFPRIFKSWRVEILSFETDIEPY 114

Query: 116 EVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            + RD  ++K  +   V  +++    +  P  ++   L    +       +++ L    +
Sbjct: 115 SMTRDAAVQKLAKTEGVKVETYCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKV 174

Query: 175 RSLPVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
              P     +T P                 + +    P +     FP GE  AL  +   
Sbjct: 175 LGSPEKLTNITSPPKDEVEQEDLAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEDS 234

Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            K++++   + +    P      T+ LSPYL  G LS R  + +L E  +    K     
Sbjct: 235 LKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFYQKLTE-IIKRQSKHSQPP 293

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S + +L+WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA
Sbjct: 294 VSLIGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDA 352

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S
Sbjct: 353 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LS 411

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451
                  YFR+++P   GK+ DPQG +IR ++PEL+  P+  I+ P      +       
Sbjct: 412 ASAFFYQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIYEPWKASLADQRAYGCV 471

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           L  +YP  IV H+      + +  AA K
Sbjct: 472 LGTDYPHRIVKHEVVHKDNIKRMGAAYK 499


>gi|19551863|ref|NP_599865.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
           13032]
 gi|62389521|ref|YP_224923.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
           13032]
 gi|41324855|emb|CAF19337.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE [Corynebacterium glutamicum ATCC
           13032]
          Length = 482

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 155/500 (31%), Positives = 225/500 (45%), Gaps = 67/500 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  L+W R+DLR++DN AL  A  +    VI +FI   ++     I A    +   SL  
Sbjct: 21  SPTLLWFRDDLRLSDNAALKWAADHG--PVIGLFI---DETINRSIGAAARWWREQSLNA 75

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + LS  G+           + +E L     +  V  + +NR+Y       D  L+K L
Sbjct: 76  LAQDLSFYGVPLLRRTG----NPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNL 131

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRSLPVPAI 182
           + + I   S    +L  P  +       YKV+TPF     +    +  +    ++PVP+ 
Sbjct: 132 RDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPS- 190

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            LTGP          + PF +   +     GE+NA   L  F +  +  Y + RD  A  
Sbjct: 191 HLTGPEDVELPILEMEQPFWSTTLVKECAPGEKNASEKLFDFLEH-LQDYPQARDSLARS 249

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LS +L  G +S  + W        +       G   +L EL+WR+F  H +   P 
Sbjct: 250 ATSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYALPH 302

Query: 301 VCMGKPFIPWTEKIEWNKDS----------------------HLLQAWKQGYTGFPIIDA 338
           +           +  W+ D                         L AW+ G TG P++DA
Sbjct: 303 MDTQN-VRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDA 361

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            MR+L   G MHNR+RM+ ASFL K+L + WR GEE+F   L+D D ASN   WQWAA +
Sbjct: 362 GMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGS 421

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           G+D+ PYFRIFNP  Q K+FDP  T+IR W+PE                     + +YP 
Sbjct: 422 GDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPD 462

Query: 459 PIVDHKKACHHTLNQYYAAK 478
           PIVD K++    L+ Y A K
Sbjct: 463 PIVDLKESRQIALDAYSAIK 482


>gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans]
 gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans]
          Length = 540

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 131/508 (25%), Positives = 204/508 (40%), Gaps = 38/508 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISA 55
           M A  +  VH  W R  LR+ DN AL     A + +  K  V  +FI  P       + A
Sbjct: 1   MDAQRSTLVH--WFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDPGILDWMQVGA 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  F+  +L  +   L +        +        E         RV  L +    E  
Sbjct: 59  NRWRFLQQTLEDLDNQLRKLDSRLFVVRGKP----AEVFPRIFKSWRVEMLTFETDIEPY 114

Query: 116 EVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA------------LQMYKVYTPFR 162
            + RD  ++K  +   V  ++     +  P  ++                 + ++  P  
Sbjct: 115 SLTRDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKV 174

Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
             + + L +           + +       + +    P +     FP GE  AL  + + 
Sbjct: 175 LGVPEKLKKMHTPPKDEVEQKDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEES 234

Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            K++++   + +    P      T+ LSPYL  G LS R    +LKE  +    K     
Sbjct: 235 LKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPP 293

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S + +L+WREFY  + A  P+         +  +I W +    L+AW  G TG+P IDA
Sbjct: 294 VSLIGQLMWREFYYTVAAAEPNFDRMLG-NVYCMQIPWQEHPDHLEAWTHGRTGYPFIDA 352

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S
Sbjct: 353 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LS 411

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451
                  YFR+++P   GK+ DPQG +IR ++PEL+  P   I+ P      +       
Sbjct: 412 ASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLADQRAYGCV 471

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           L  +YP  IV H+      + +  AA K
Sbjct: 472 LGTDYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|242060916|ref|XP_002451747.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
 gi|241931578|gb|EES04723.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
          Length = 550

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 133/515 (25%), Positives = 220/515 (42%), Gaps = 37/515 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKAL-----YAACHNSDAKVIAVFIATPEQWRQHGISA 55
           M+A TA +  +VW R  LR+ DN AL     Y A   S  ++  VF+  P   R    ++
Sbjct: 1   MEAATAATAAMVWFRKGLRVHDNPALDAARRYGAGAASARRLYPVFVLDPRYLRPDPAAS 60

Query: 56  ---------RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL 106
                     +  F+  SL  +      + +  +       DD  + + +      + KL
Sbjct: 61  SPGSARAGVARIRFLLESLSDLDA--RLRRLGSRLLLLRARDDVADAVCAALKDWNIGKL 118

Query: 107 FYNRQYEINEVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKA 164
            +    E   + RDK +    L   +   +     L  P  I+     +    Y  F   
Sbjct: 119 CFESDTEPYALARDKKVTDFALASGIEVFTPVSHTLFDPAEIIKKNGGRPPLTYQSFVSI 178

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILR 220
             +           +P +  TG      +P   +  +  I     P F  GE  AL  ++
Sbjct: 179 AGEPPDPIMEEYSELPPLGDTGEYELLPVPTVEELGYVDISEEEIPPFRGGETEALRRMK 238

Query: 221 KFCKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           +  + K +   + + +  P+      T+ LSPYL  G LS R  ++ +++ +  +    K
Sbjct: 239 ESLQNKEWVAKFEKPKGDPSAFLKPSTTVLSPYLKFGCLSSRYFYHCIQDVYKSVRNHTK 298

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
               S + +L+WR+F+  +    P+    K      ++I W+++  L  AW+ G TG+P 
Sbjct: 299 P-PVSLIGQLLWRDFFYTVSYGTPNFDRMKG-NKICKQIPWSENEELFVAWRDGQTGYPW 356

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GWMH+  R   A FL + D+ + W  G + F   L+D D A NNG W W
Sbjct: 357 IDAIMIQLRKWGWMHHLARHSVACFLTRGDMFIHWEKGRDVFERLLIDSDWAINNGNWMW 416

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------D 448
             S  +    Y RI++P   GK++DP G +IRH++P L ++P +YI+ P +         
Sbjct: 417 -LSCSSFFYQYHRIYSPITFGKKYDPNGNYIRHFIPVLKDMPREYIYEPWTAPLSIQKKA 475

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
              +  +YP P+VDH+ A      +   A   S L
Sbjct: 476 NCIIGKDYPKPVVDHETASKECKKRMGEAYASSRL 510


>gi|255545724|ref|XP_002513922.1| DNA photolyase, putative [Ricinus communis]
 gi|223547008|gb|EEF48505.1| DNA photolyase, putative [Ricinus communis]
          Length = 660

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 139/492 (28%), Positives = 222/492 (45%), Gaps = 44/492 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        V+AVF+  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVAVFVWAPEEEGHYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  SL   G V    + +   DS+  L         T+LF+N  Y+   + RD   +
Sbjct: 60  LAHLDSSLRSLGTVLVSKRST---DSVSSLLEVVKSTGATQLFFNHLYDPISLVRDHRAK 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L    +  +S      + PG                    +      +   LP P   
Sbjct: 117 EVLTAQGIAVRSLTRICYMNPG-----------------XXCLSMPYDPEAPLLP-PKRI 158

Query: 184 LTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           ++G ++  PS+   F D   +  + +    +  G  NA   L  F    +  Y + R   
Sbjct: 159 ISGDISRCPSDTLIFEDESEKGSNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKA 218

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRH 293
               TS LSP+L  G +S R+  + ++ + V    +           +L  +  RE+ R+
Sbjct: 219 DSATTSFLSPHLHFGEVSVRKVLHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRY 278

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L   +P     +P +   +   W  +    +AW+QG TG+P++DA MR+L   GW+H+R+
Sbjct: 279 LSFNHP-YSHERPLLGHLKFFPWIVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 337

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + T  D   + RI NP  
Sbjct: 338 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQF 397

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHKK 465
           +G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  K
Sbjct: 398 EGYKFDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAK 457

Query: 466 AC-HHTLNQYYA 476
                 L++ + 
Sbjct: 458 VRLQEALSEMWQ 469


>gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio]
 gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio]
          Length = 638

 Score =  342 bits (878), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 119/500 (23%), Positives = 195/500 (39%), Gaps = 34/500 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MSV+ + W R  LR+ DN AL  A + +D  +  V+   P       +   +  F+  SL
Sbjct: 1   MSVNSVHWFRKGLRLHDNPALLEALNGADT-LRCVYFLDPWFAGASNLGVNRWRFLLQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       + +V++L +    E     RD  ++K
Sbjct: 60  EDLDASLRKLNSCLFVIRG----QPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKK 115

Query: 126 -RLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
              +  V         L     I+  +  Q    Y  F+  +          + P   + 
Sbjct: 116 LACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSMEPPDPPLASPDRGMM 175

Query: 184 LTGPVTPSNIPR-------FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                  S   R         +  F        ++P GE  AL  + +        + E 
Sbjct: 176 GKCVTPISENHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALKRMERHLGPDSTAWQEN 235

Query: 234 RDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            + P +  +        LSPYL  G LS R  +         +  K  + + S  ++++W
Sbjct: 236 FERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCNSLSSTKKVK-KNMNPSISLYDKILW 294

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF+       P     +   P   +I W++++  L  W +  TGFP IDA M QL   G
Sbjct: 295 REFFYTAATNNPRFDRMEG-NPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMMQLRQEG 353

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           W+H+  R   A FL + DL + W  G + F   LLD D + N G W    S  +    +F
Sbjct: 354 WIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWL-CHSCSSFFQQFF 412

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPI 460
             + P   G+R DP G FIR +LP L + P +YI+ P           K  + ++YP P+
Sbjct: 413 HCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHDVQLAAKCAIGVDYPKPM 472

Query: 461 VDHKKACHHTLNQYYAAKKQ 480
           V+H +A    + +     +Q
Sbjct: 473 VNHAEASRLNIERMRQIYQQ 492


>gi|77462693|ref|YP_352197.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           2.4.1]
 gi|77387111|gb|ABA78296.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           2.4.1]
          Length = 471

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 138/474 (29%), Positives = 214/474 (45%), Gaps = 25/474 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L  A       +I +FI  PE      + A     +   +    +
Sbjct: 8   ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      ++  L++   +     + ++R +E +   RD+ ++  L+  
Sbjct: 64  ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPDWRARDEGVKAGLRQA 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV----QADLRSLPVPAIRLT 185
            I   S     +  P  +       Y+VYTPF KA+    V        R L      ++
Sbjct: 120 GIEAASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASSPPPARLLSPAEWPVS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   ++ R        + P   +GE  A   L +F    +  Y  +RD P    TS+L
Sbjct: 180 ERLACWDLGRAMHRGAAVVAPHLAVGEAAAAERLTRFLSGPLDRYAAERDRPDAPVTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +S R  W+           + ++GA  +L EL WREF  HL+   P +   +
Sbjct: 240 SENLTYGEISARSLWHAGMR----ARAEGRAGAEKFLQELAWREFGWHLLYHTPEIAR-R 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +    +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L K L
Sbjct: 295 NWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFRIFNP  Q ++FDP+  + 
Sbjct: 355 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414

Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           + +L E+   P     A     P SW  + D    YP P+V   +     L  Y
Sbjct: 415 QRFLAEIARRPGPEALAFFEAVPRSWGLRPDRC--YPRPVVGLAEGRERALAAY 466


>gi|184201932|ref|YP_001856139.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201]
 gi|183582162|dbj|BAG30633.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201]
          Length = 441

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 134/477 (28%), Positives = 214/477 (44%), Gaps = 45/477 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +V  R+DLR+TD+ AL+ A  + +  V+ +++   E      +      +++ SL  +
Sbjct: 2   TTVVLFRDDLRVTDHPALHEAVSHGE-PVVCLYVLDEESEGVRPLGGAAKWWLHHSLTSL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
              LS+ G+     +        + +     +    +L +NR+Y   E   D  L++   
Sbjct: 61  ASDLSELGVPLTLRRGPAG----KVVPHVVRETGADRLLWNRRYGGPERAVDAGLKEWAG 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV------PA 181
           ++ V   S+  S++  P ++       Y+V+TPF +A        +    P       PA
Sbjct: 117 ENGVEAHSYAGSLMFEPWTVSTQNGDPYRVFTPFWRACTSGPPPREPYPAPSSIDHADPA 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                 V    +P   D+    +   + +GE+ A   L +F  E++  Y + RD+PA   
Sbjct: 177 PASEDLVDWELLPTHPDWS-GGLARTWTVGERAAHERLDEFLDERLPRYTQDRDVPARPA 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LSP+L  G +SP   W+   E               +L E+ WREF  + +  +P +
Sbjct: 236 TSGLSPHLRWGEISPYTVWHTALER--------AENPGKFLTEVGWREFSWYNLYVHPDM 287

Query: 302 CMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  P  +   W   D  +L AW+ G TG P++DA M +L   G M NR+RM+ AS 
Sbjct: 288 ATEN-INPKFDAFPWPPLDEDVLAAWQMGRTGIPLVDAGMHELWETGAMQNRVRMVVASL 346

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+LL+DWR+GE++F   L+D D ASN   WQW A  G D+ PYFRIFN   Q K+FDP
Sbjct: 347 LAKNLLIDWRLGEQWFWDTLVDADPASNPHNWQWVAGCGTDAAPYFRIFNAETQQKKFDP 406

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
              ++  W      V                       PIVD K++  H L  + + 
Sbjct: 407 DFVYVDRWNGRQEGV----------------------EPIVDLKESRAHALELFKSL 441


>gi|254373814|ref|ZP_04989297.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548]
 gi|151571535|gb|EDN37189.1| hypothetical protein FTDG_01598 [Francisella novicida GA99-3548]
          Length = 499

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 129/483 (26%), Positives = 214/483 (44%), Gaps = 31/483 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAERGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
              L++ G            D++E  +    +  +  ++ N++   N   +RD  LEK  
Sbjct: 59  NTELTKLGQSLTIM----LGDAVEIFEQLIQKYPIKNVWSNQETWNNWTYQRDIKLEKFF 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I              ++       K    + + + + +++A  +   +   ++  P
Sbjct: 115 KQNNIAWHQPYQ-----NGVVRCLADRDKWALLWHQRMSEKIIRAPTKLKFICENQIKIP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
              S         +         G   AL IL  F  ++   Y ++   P  A +  S+L
Sbjct: 170 TAES-----LGLEYDNCYKRQKGGRIRALRILDSFLYQRGCSYTKEMSSPVTAFKSCSRL 224

Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           SPY++ GV+S ++ + +       +KE  V    K  S   S+L+ L W   +   +   
Sbjct: 225 SPYIAFGVISLKEIYQKATQRKNEIKESRVKNKTKWLSAMRSFLSRLCWHCHFMQKLEDQ 284

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PS+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  
Sbjct: 285 PSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    
Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G FIR WLPEL NV  + IH P  WL+K++ SL+YP PI+D K+A     +  Y  +
Sbjct: 403 DPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIYKIR 459

Query: 479 KQS 481
           K S
Sbjct: 460 KSS 462


>gi|134100631|ref|YP_001106292.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291006735|ref|ZP_06564708.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133913254|emb|CAM03367.1| putative deoxyribodipyrimidine photolyase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 448

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 141/473 (29%), Positives = 219/473 (46%), Gaps = 36/473 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +     DLR+ DN  L AA      +V+ +F+   +  R    S R++ F+  SL 
Sbjct: 1   MTTAIALFTRDLRVHDNPMLAAAAEAD--RVVPLFVLDDDIQRSRFASPRRTRFLDESLT 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L   G      + +     ++ +     +    ++          +RR   L + 
Sbjct: 59  DLDENLRGLGGRLVLRRGA----LVDEVCRIAEEVDAAEVHICADVSGYAMRRQARLAEA 114

Query: 127 LQHRVICKSFDDSVL--LPPGSILNH--ALQMYKVYTPFRKALIQNLVQAD---LRSLPV 179
           L  +       D V+  L PG +         + V+TP+ +  ++   +      R L +
Sbjct: 115 LSAQRRELRCHDEVVTVLAPGRVTPGGADKDHFTVFTPYLRRWLETGKRPPAAKPRRLRL 174

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           P+    GP               + D  +P GE        ++    V  Y E+ D  A 
Sbjct: 175 PSRLSIGPRPAG----------GSADGTWPGGETEGRRRADRWLGGGVRAYHERHDDLAA 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TSQLSPYL  G LS R+  +R              G  +++ +L WR+F+  ++A  P
Sbjct: 225 DATSQLSPYLHFGCLSARELADRA---------GRGEGPEAFVRQLAWRDFHHQVLAARP 275

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              + + + P  ++  W++D+  L+AWKQG TG PI+DA MRQL  +GWMHNR R+IT S
Sbjct: 276 E-AVHEDYRPRGDR--WHRDADALRAWKQGRTGVPIVDAGMRQLLELGWMHNRARLITGS 332

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K L +DWR G  +F   L+DGD+A+N   WQW A TG D+ P  R+ NP  Q  R+D
Sbjct: 333 FLTKSLYLDWRAGAWHFFDHLVDGDIANNCLNWQWVAGTGTDTRP-NRVLNPLRQADRYD 391

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
             G ++R W+PEL  +    +H P    D     L YP PIVD  +A    L+
Sbjct: 392 AGGDYVRRWVPELAGLGAGDVHRPWRLGDDELGRLGYPAPIVDLDQARERFLD 444


>gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta]
 gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta]
          Length = 540

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 131/505 (25%), Positives = 204/505 (40%), Gaps = 36/505 (7%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYA---ACHNSDAK--VIAVFIATPEQWRQHGISARQS 58
               S  + W R  LR+ DN AL     A + +  K  V  +FI  P       + A + 
Sbjct: 2   DVKRSTLVHWFRKGLRVHDNPALSHIFSAANAAPGKYFVRPIFILDPGILDWMQVGANRW 61

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  +L  +   L + G      +        E         RV  L +    E   + 
Sbjct: 62  RFLQQALEDLDNQLRKLGSRLFVVRGKP----AEVFPRIFKSWRVEILTFETDIEPYSLS 117

Query: 119 RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           RD  ++K  +   +  ++     +  P  ++   L    +       +++ L    +   
Sbjct: 118 RDASVQKLAKAAGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKVLGA 177

Query: 178 PVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
           P     +T P                 + +    P +     FP GE  AL  +    K+
Sbjct: 178 PEKLQNITTPPNDEVEQEDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRMEDSLKD 237

Query: 226 KVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           +++   + +    P      T+ LSPYL  G LS R    +LKE  +    K      S 
Sbjct: 238 ELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKE-IIKRQPKHSQPPVSL 296

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           + +L+WREFY  + A  P+         +  +I W +  + L+AW  G TG+P IDA MR
Sbjct: 297 IGQLMWREFYYTVAAAEPNFDRMMG-NVYCMQIPWQEHPNHLEAWTHGRTGYPFIDAIMR 355

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S   
Sbjct: 356 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LSASA 414

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSL 454
               YFR+++P   GK+ DPQG +IR ++PEL+  P+  I+ P      +       L  
Sbjct: 415 FFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPSGCIYEPWKASLADQRAYGCVLGT 474

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479
           +YP  IV H+      + +  AA K
Sbjct: 475 DYPHRIVKHEVVHKENIKRMGAAYK 499


>gi|241667256|ref|ZP_04754834.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875807|ref|ZP_05248517.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841828|gb|EET20242.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 499

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 126/483 (26%), Positives = 210/483 (43%), Gaps = 31/483 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLRI DN AL  A    D  V+ ++I  P+ W+Q  +S RQ  F+   L ++
Sbjct: 1   MQVVWFKRDLRINDNLALSLASEKED--VLPLYIIEPKLWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
              L++ G            D++E  +    Q  +  ++ +++   N   +RD  LEK  
Sbjct: 59  NTELTRLGQPLILM----IGDAVEVFEQLIQQYPINSVWSHQETWNNWTYQRDIKLEKFF 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I              ++       K    + K + + +V+A  +   +   +   P
Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDKWALVWHKRMSEKIVEAPNKLKFICENQTKIP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
              S         +         G   AL IL  F  ++   Y ++   P  A +  S+L
Sbjct: 170 TAES-----IGLEYDNCYKRQKGGRVRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224

Query: 246 SPYLSIGVLSPRQCWN-------RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           SPY++ GV+S ++ +         +K   +    K  S   S+L+ L W   +   +   
Sbjct: 225 SPYMAFGVISIKEVYQLANQRKNEIKASSIKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P++        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  
Sbjct: 285 PNIEYENLHSAYDQLRTEPLNQQYFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    
Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G FIR WLPEL NV  + IH P  WL+K++ +++YP PI+D K+A     +  Y  +
Sbjct: 403 DPNGEFIRRWLPELENVSNENIHTP--WLEKHN-AVDYPDPIIDEKQARKFAADNIYKIR 459

Query: 479 KQS 481
           K S
Sbjct: 460 KNS 462


>gi|328676445|gb|AEB27315.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1]
          Length = 499

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 126/483 (26%), Positives = 213/483 (44%), Gaps = 31/483 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
              L++ G            D++E  +    +  +  ++ +++   +   +RD  LEK  
Sbjct: 59  NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I              ++            + + + + +++A  +   +   ++  P
Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFICENQIKIP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
              S         +         G   AL IL  F  ++   Y ++   P  A +  S+L
Sbjct: 170 TAES-----LGLEYDNCYKRQKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224

Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           SPY++ GV+S ++ + +       +KE  V    K  S   S+L+ L W   +   +   
Sbjct: 225 SPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PS+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  
Sbjct: 285 PSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    
Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYLQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G FIR WLPEL NV  + IH P  WL+K++ SL+YP PI+D K+A     +  Y  +
Sbjct: 403 DPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIYKIR 459

Query: 479 KQS 481
           K S
Sbjct: 460 KSS 462


>gi|119960573|ref|YP_946305.1| deoxyribodipyrimidine photolyase [Arthrobacter aurescens TC1]
 gi|119947432|gb|ABM06343.1| putative deoxyribodipyrimidine photolyase [Arthrobacter aurescens
           TC1]
          Length = 465

 Score =  342 bits (877), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 142/496 (28%), Positives = 210/496 (42%), Gaps = 56/496 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +VW R+DLR+ DN AL A     D   +A+++   E             +++ SL 
Sbjct: 1   MKPSIVWFRDDLRVADNPALRA--AVDDGAAVALYVLDEESPGIRPHGGAARWWLHHSLT 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++  L + G+     +      + + L           L++NR+Y   E   D  ++  
Sbjct: 59  ALRGDLDKLGVPLLLRRGP----ATDVLRETTTAIGAGGLYWNRRYGSAERTVDADIKAW 114

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                +   SF  S+L  P  +       YKV+TPF + +     +  L           
Sbjct: 115 AGEAGLHVSSFQASLLHEPWEVTTKTGGQYKVFTPFWRTVSAQDFREPLAVPEAGHGFTG 174

Query: 186 GPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                  +  +   P +      +  M+  G       L +F  + +  Y E R+ P   
Sbjct: 175 KLPVYDQLESWQLLPTKPDWSGGLAEMWTPGAAAGHKRLARFVADGLSNYSEGRNRPDTD 234

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G+S LSPYL  G LSP + W+ L         K    A  + +EL WREF  H     P 
Sbjct: 235 GSSCLSPYLRWGELSPFEVWHAL-------GSKRSESASIYASELGWREFCWHQYFHNPQ 287

Query: 301 VCMGKPFIPWTEKIEW-----------------NKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +       P  ++  W                        +AW+QG TGFP++DA  RQL
Sbjct: 288 LATAN-LRPEFDRFPWAWPGKNGNGNGGRHPGHESAPEEFRAWQQGRTGFPMVDAGQRQL 346

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNR+RM+ ASFLVK+L + W++GE++F   L+D D ASN   WQW A +G D+ 
Sbjct: 347 WHTGWMHNRVRMVAASFLVKNLGIHWQLGEQWFWDTLVDADPASNPANWQWVAGSGADAS 406

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           P+FRIFNP  Q  +FDPQG +I HWLP+                     +  YP  IVD 
Sbjct: 407 PFFRIFNPEAQRVKFDPQGRYIAHWLPDFG-------------------TPEYPEEIVDL 447

Query: 464 KKACHHTLNQYYAAKK 479
           K      L  Y   ++
Sbjct: 448 KTTRAEALEAYKEMRE 463


>gi|21323395|dbj|BAB98023.1| Deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
           13032]
          Length = 468

 Score =  341 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 155/500 (31%), Positives = 225/500 (45%), Gaps = 67/500 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  L+W R+DLR++DN AL  A  +    VI +FI   ++     I A    +   SL  
Sbjct: 7   SPTLLWFRDDLRLSDNAALKWAADHG--PVIGLFI---DETINRSIGAAARWWREQSLNA 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + LS  G+           + +E L     +  V  + +NR+Y       D  L+K L
Sbjct: 62  LAQDLSFYGVPLLRRTG----NPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNL 117

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRSLPVPAI 182
           + + I   S    +L  P  +       YKV+TPF     +    +  +    ++PVP+ 
Sbjct: 118 RDKGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPS- 176

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            LTGP          + PF +   +     GE+NA   L  F +  +  Y + RD  A  
Sbjct: 177 HLTGPEDVELPILEMEQPFWSTTLVKECAPGEKNASEKLFDFLEH-LQDYPQARDSLARS 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LS +L  G +S  + W        +       G   +L EL+WR+F  H +   P 
Sbjct: 236 ATSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYALPH 288

Query: 301 VCMGKPFIPWTEKIEWNKDS----------------------HLLQAWKQGYTGFPIIDA 338
           +           +  W+ D                         L AW+ G TG P++DA
Sbjct: 289 MDTQN-VRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDA 347

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            MR+L   G MHNR+RM+ ASFL K+L + WR GEE+F   L+D D ASN   WQWAA +
Sbjct: 348 GMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGS 407

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           G+D+ PYFRIFNP  Q K+FDP  T+IR W+PE                     + +YP 
Sbjct: 408 GDDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPD 448

Query: 459 PIVDHKKACHHTLNQYYAAK 478
           PIVD K++    L+ Y A K
Sbjct: 449 PIVDLKESRQIALDAYSAIK 468


>gi|296392873|ref|YP_003657757.1| deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985]
 gi|296180020|gb|ADG96926.1| Deoxyribodipyrimidine photo-lyase [Segniliparus rotundus DSM 44985]
          Length = 444

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 143/471 (30%), Positives = 222/471 (47%), Gaps = 33/471 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ D   L      +    + +F+  P   R  G    +  +++++L  + +
Sbjct: 6   LCWFRRDLRLADQPMLLEVAKEA----VGLFVLDPRLTR--GSGQARLDYLFSALAALDE 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L  + +V          D    +     +  V  +     +      RD  +   L+ +
Sbjct: 60  TLGGRLVV-------AEGDPARVVPDVARELNVGAVRCTEDFAPYGRARDAAVAAALKAQ 112

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               +       + PG + N +   Y+V+TPFR+A   +      ++       L   V+
Sbjct: 113 GRELRPAGSPYAISPGRVRNGSGNPYRVFTPFRRAWSAHGWPRPAQTGADSTRWLAAEVS 172

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                   + P   +  +   GEQ A      F +  +  Y + RD PA+ GTS+LS +L
Sbjct: 173 CQT-----ELPSPRL--VREAGEQAAAARWTAFLEGALAGYAQNRDFPAVDGTSRLSAHL 225

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G L PR          +       +    ++ EL WR+FY  +++ +P          
Sbjct: 226 KFGALHPRTLL-----RDIAAADADDTDKDVFVTELAWRDFYADVLSHHPRTAWHN-VDR 279

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             ++  W+       AW++G TG+PI+DA MRQL   GWMHNR+RMITASFL KDL + W
Sbjct: 280 RFDRFAWSDSQEHFAAWQRGETGYPIVDAGMRQLAAEGWMHNRVRMITASFLTKDLHLPW 339

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + G  +F+  L+DGDLASN+ GWQW A TG D+ PYFR+FNPT QGK+FDP G +I+ W+
Sbjct: 340 QWGARHFIRLLVDGDLASNSHGWQWTAGTGTDAAPYFRVFNPTAQGKKFDPGGEYIQRWV 399

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           P+L ++P    H P+           YP PIVDH +     L +Y A K +
Sbjct: 400 PQLRDMPGPKAHEPNPRPA------GYPPPIVDHAQERAEALLRYEAVKGR 444


>gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
           subsp. patens]
 gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
           subsp. patens]
          Length = 526

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 136/510 (26%), Positives = 206/510 (40%), Gaps = 46/510 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHF 60
            L+W R  LR+ DN AL  +C  + + V  VF+  P        +           +  F
Sbjct: 5   SLMWFRKGLRLHDNPALLRSCEGA-SHVYPVFVLDPWFLAPDPTAPSPGSKLVGVNRIRF 63

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  + ++L + G            +    +    ++ ++ +L +    E     RD
Sbjct: 64  LLQSLEDLDENLRKHGSRLLVLHG----NPTTVIPELLMKWQINELCFEFDTEPYAQDRD 119

Query: 121 KLLEKRL-QHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             ++K   ++ V   S     L  P  +I  +  Q    Y  F K   +  +        
Sbjct: 120 ADIKKLATKYGVEVFSPVSHTLFNPIDTIRKNGGQTPLTYQAFLKLTGKPPLPVTAPLQI 179

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVY--YYVEQ 233
                    V    +P+  D  +  +D  F   P GE  AL  L K    + +   + + 
Sbjct: 180 PSPPEDLNDVHVVPVPKLEDLGYVNLDEEFSPHPGGETEALRRLDKSLVNQKWVCDFEKP 239

Query: 234 RDIPAI---QGTSQLSPYLS------------IGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
           +  P       T+ LSPYL              G LS R    RL   +     K  S  
Sbjct: 240 KGNPTAFIEPATTVLSPYLKASNLGFLLKPMLFGCLSCRLFHQRLLAVYSQ-NKKHSSPP 298

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S   +L+WREF+       P+        P  ++I W  D  LL AW+ G TG+P IDA
Sbjct: 299 VSLEGQLLWREFFYTAGYGTPNFDRMLG-NPICKQIPWKDDDRLLAAWRDGQTGYPWIDA 357

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           AM QL   GWMH+  R   A FL + D+ V W  G + F   L+D D A NNG W W  S
Sbjct: 358 AMVQLRKWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDSDWAINNGNWLW-LS 416

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------ND 451
                  Y RI++P   GK++DP G +++H+LP L ++P  YI+ P +            
Sbjct: 417 ASAFFHQYHRIYSPVTFGKKYDPDGLYVKHFLPVLKDMPKYYIYEPWTAPLAVQKKANCI 476

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           + ++YP PIVDH  A      +   A  Q+
Sbjct: 477 IGVDYPRPIVDHSIANKECREKMGIAYSQN 506


>gi|163736265|ref|ZP_02143684.1| Deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis BS107]
 gi|161390135|gb|EDQ14485.1| Deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis BS107]
          Length = 479

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 152/475 (32%), Positives = 223/475 (46%), Gaps = 26/475 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+R DLR+ DN A  AA   +   VI VFI          + A     +   L  + K
Sbjct: 12  IWWVRRDLRLADNPA-LAAAVAAGVPVIPVFIFE---TLDEDLGAAPRFRLGLGLAHLAK 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129
            L Q+G      +      + E L     +     + + R Y+   + RD  ++++L+  
Sbjct: 68  ELEQRGARLILRRGP----AQEVLTQLITETGAGAVHWTRAYDPQAIARDTGIKEQLKGQ 123

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVPAIRLTG 186
            +  KSF   +L  P ++      MY+VY+P+ K++    V         +P PA   T 
Sbjct: 124 GIAAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSRIPAPAHWPTS 183

Query: 187 PVTPSNIPRF-FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
               S             +     +GE  A   L +F   +V  Y + RD PA+  TS L
Sbjct: 184 DDLDSWQMAAAMRRGADVVAQYCRVGEDAAQERLAEFLDTRVADYKQDRDFPAVDATSGL 243

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +SPR+ W+      ++     KSGA  +L E++WREF  HLM   P +   +
Sbjct: 244 SENLAWGEISPRRMWH----HGLEARRAGKSGAEHFLKEIVWREFAYHLMFHTPHILT-R 298

Query: 306 PFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            + P  E   W  +D   + AW++G TG+  +DAAMR+L   G MHNR RMI ASFL K 
Sbjct: 299 NWRPEWEHFNWSERDDDKVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVASFLTKH 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           +L  WRIG+++F   L+D D ASN  GWQW A +G D+ P+FRIFNP  Q ++FDP+G +
Sbjct: 359 MLTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFDPKGRY 418

Query: 425 IRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
              W+ E    P Q     Y   P SW      +     P +D K+     L  Y
Sbjct: 419 QSAWIAEGQANPPQTALDFYRATPLSWELSPQDTRA--EPFLDLKEGRARALEAY 471


>gi|167526345|ref|XP_001747506.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773952|gb|EDQ87586.1| predicted protein [Monosiga brevicollis MX1]
          Length = 486

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 128/486 (26%), Positives = 200/486 (41%), Gaps = 44/486 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++ S+ L W R   R+ DN AL+ A   +  +V  VF+  P   +   +   + +F+  S
Sbjct: 2   SSSSISLHWFRKGQRLHDNPALWRALRGA-TQVYPVFVIDPHFAKPENVGVLRYNFLLES 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + + L   G      +        E L     + +VT+L Y    E     RD  + 
Sbjct: 61  LKDLDEQLRGLGSRLYVLRGKPE----EQLPKKFKEWKVTRLTYELDTEPYARVRDAAIN 116

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
              + H V   +    +L  P S L       K                  +S  VP ++
Sbjct: 117 DLAKKHNVEVIAEAGHMLHDPESYLKKCGGASK--------------DRQDKSYDVPTLK 162

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPAI-- 239
             G                    +FP GE+ AL  L  F K+K +   + + +  PA   
Sbjct: 163 EMGYSPIKAPQMV----------LFPGGEREALKRLEHFIKKKNWIATFEKPKTNPAALD 212

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             T+ LSPY+ +G LS R+ W  +++ + D      +   S   +L++RE +        
Sbjct: 213 PDTTGLSPYMKMGCLSVRKFWYDVQKVY-DEKKDHSTPPESLHGQLLFRELFHLCGYAVK 271

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +    K       +I+W+     L AW+   TG+P IDA M QL   GWMH+  R   A 
Sbjct: 272 NFDKMKGNR-ICRQIDWDYSEKFLDAWENSKTGYPWIDACMAQLRHEGWMHHLARHAVAC 330

Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           FL + DL   W  G   F   L+D D   NN  W W  S  +    YFR+++P   G+++
Sbjct: 331 FLTRGDLYQSWEHGARIFEKHLVDADWHLNNANWMW-LSCSSFFYQYFRVYSPIGFGQKY 389

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLN 472
           D +G FIR +LP L ++P +YI+ P           K  +  +YP PIVDH        +
Sbjct: 390 DKEGAFIRKYLPVLKDMPKKYIYEPWKAPKEVQQKAKCIIGKDYPEPIVDHSDVSETNKD 449

Query: 473 QYYAAK 478
           +  A  
Sbjct: 450 RMKACY 455


>gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio]
 gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio]
          Length = 639

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 119/501 (23%), Positives = 202/501 (40%), Gaps = 35/501 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           MSV+ + W R  LR+ DN AL  A + +D  +  V+   P       +   +  F+  SL
Sbjct: 1   MSVNSVHWFRKGLRLHDNPALLEALNGADT-LRCVYFLDPWFAGASNLGVNRWRFLLQSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       + +V++L +    E     RD  ++K
Sbjct: 60  EDLDASLRKLNSCLFVIRG----QPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKK 115

Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              +  V         L     I+        +     + L+ ++   D          +
Sbjct: 116 LACEAGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSMEPPDPPLSSPDRGMM 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFC-KEKVYYYVE 232
              VTP +      Y    ++ +           +P GE  AL  + +    +    + E
Sbjct: 176 GKCVTPISENHRDKYGVPLLEELGFDTEGLAPAVWPGGESEALKRMERHLGPDSTVAWQE 235

Query: 233 QRDIPAIQGTS------QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             + P +  +        LSPYL  G LS R  + +L + +  +  K  + + S  ++++
Sbjct: 236 NFERPKMNASPLMASPLGLSPYLRFGCLSCRLFYCKLTQLYKKVK-KNMNPSISLYDKIL 294

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W++++  L  W +  TGFP IDA M QL   
Sbjct: 295 WREFFYTAATNNPRFDRMEG-NPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMMQLRQE 353

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W    S  +    +
Sbjct: 354 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWL-CHSCSSFFQQF 412

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLP 459
           F  + P   G+R DP G FIR +LP L + P +YI+ P           K  + ++YP P
Sbjct: 413 FHCYCPVGFGRRIDPNGDFIRRYLPVLRDFPAKYIYDPWNAPHDVQLAAKCVIGVDYPKP 472

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H +A    + +     +Q
Sbjct: 473 MVNHAEASRLNIERMRQIYQQ 493


>gi|218190281|gb|EEC72708.1| hypothetical protein OsI_06300 [Oryza sativa Indica Group]
          Length = 551

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 130/500 (26%), Positives = 208/500 (41%), Gaps = 31/500 (6%)

Query: 12  VWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHFI 61
           VW R  LR+ DN AL  A    + A++  VF+  P        +           +  F+
Sbjct: 17  VWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRFLLPDQAAPSPGSARAGVARVRFL 76

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L + G      +  +  D    + +      + KL +    E   + RDK
Sbjct: 77  LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136

Query: 122 LLEK-RLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            +        +   S     L  P  I+  +  +    Y  F     +           +
Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSFVAIAGEPPEPIMEEYSEL 196

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
           P +  TG      +PR  +  +  I       F  GE  AL  +R+   +K +   + + 
Sbjct: 197 PPVGDTGEYELLPVPRVEELGYGDISQEDLSPFRGGETEALKRMRESLHDKEWVAKFEKP 256

Query: 234 RDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           +  P+      T+ LSPYL  G LS R  ++ +++ +     K  +   S   +L+WR+F
Sbjct: 257 KGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDVYRSTK-KHTNPPVSLTGQLLWRDF 315

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  +    P+    K      ++I W ++  L  AW+ G TG+P IDA M QL   GWMH
Sbjct: 316 FYTVAFGTPNFDQMKG-NKICKQIPWTENEELFPAWRDGRTGYPWIDAIMIQLRKWGWMH 374

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G + F   L+D D A NNG W W  S  +    Y RI+
Sbjct: 375 HLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSSFFYQYHRIY 433

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDH 463
           +PT  GK++DP G +IRH++P L ++P +YI+ P +            +  +YP P+VDH
Sbjct: 434 SPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGKDYPKPVVDH 493

Query: 464 KKACHHTLNQYYAAKKQSLL 483
             A          A   + L
Sbjct: 494 AIASKECKKMMGEAYASNRL 513


>gi|14517649|gb|AAK64295.1|AF159509_2 DNA-photolyase [[Brevibacterium] flavum]
          Length = 482

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 154/499 (30%), Positives = 220/499 (44%), Gaps = 65/499 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              L+W R+DLR++DN AL  A  +    VI +FI   ++     I A    +   SL  
Sbjct: 21  PPTLLWFRDDLRLSDNAALKWAADHG--PVIGLFI---DETINRSIGAAARWWREQSLNA 75

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + LS  G+           + +E L     +  V  + +NR+Y       D  L+K L
Sbjct: 76  LAQDLSFYGVPLLRRTG----NPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNL 131

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIR 183
           + + I   S    +L  P  +       YKV+TPF KA  +        ++         
Sbjct: 132 RDQGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPSH 191

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           LTGP          + PF A   +     GE+NA   L  F +  +  Y + RD  A   
Sbjct: 192 LTGPEGVELPIPEMEQPFWATTLVKECAPGEKNASEKLFDFLEH-LQDYPQARDSLARSA 250

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LS +L  G +S  + W        +       G   +L EL+WR+F  H +   P +
Sbjct: 251 TSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYALPHM 303

Query: 302 CMGKPFIPWTEKIEWNKDS----------------------HLLQAWKQGYTGFPIIDAA 339
                      +  W+ D                         L AW+ G TG P++DA 
Sbjct: 304 DTQN-VRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAG 362

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR+L   G MHNR+RM+ ASFL K+L + WR GEE+F   L+D D ASN   WQWAA +G
Sbjct: 363 MRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSG 422

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
           +D+ PYFRIFNP  Q K+FDP  T+IR W+PE                     + +YP P
Sbjct: 423 DDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPDP 463

Query: 460 IVDHKKACHHTLNQYYAAK 478
           IVD K++    L+ Y A K
Sbjct: 464 IVDLKESRQIALDAYSAIK 482


>gi|254797170|ref|YP_003082010.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
           Illinois]
 gi|254590408|gb|ACT69770.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
           Illinois]
          Length = 469

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 146/482 (30%), Positives = 231/482 (47%), Gaps = 37/482 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW R D R  DN AL+ A       +I V+I                 +I  SL+ +
Sbjct: 6   IAVVWFRKDFRTDDNPALFEATKI--RSIIPVYIIDENNCSIRKPGKAARIWIAESLIDL 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE-KRL 127
            KSL        +H      ++I  L +   + +   L++N  Y+  + + D+ +  + L
Sbjct: 64  NKSLD-------HHLKIYSGNTITILKTLLSRYKAEALYWNTTYDPEQDKYDEQIRTEIL 116

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    +I ++F+  +L  P  +       Y+++T F+  +++  ++        P IR  
Sbjct: 117 KDHPNIIIRNFNARLLWEPSELRKKNGDTYRLFTAFKNKVMEEKLEPRFPIPSPPKIRYC 176

Query: 186 --------GPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                     VTP  I +  D+ F Q I   + I EQ+A  +L++F  +K+  Y   RD 
Sbjct: 177 KEINIPELASVTPEKIIKDKDHCFEQGIYKQWKISEQDAHVLLQEFVDKKLDNYHIDRDY 236

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P   GTS LSPY++ G +SP + W  L       +         +L EL+WREF  +++ 
Sbjct: 237 PGKNGTSTLSPYINFGQISPNRIWFALVRFLPQSI--------QFLTELLWREFAYNILN 288

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P +          +   W  D    + W +G TG+PI+DA +R+L + G+MHNR+RMI
Sbjct: 289 TNPELGSQN-LQQKFDYFPWENDKQKFKLWSRGETGYPIVDAGIRELLSTGYMHNRVRMI 347

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SFL K+LL+ W+ GEE+F   L+D D ASN   WQW A +G DSVPYFRIF+PT Q K
Sbjct: 348 VGSFLTKNLLIHWKYGEEFFWEYLVDADPASNTFNWQWIAGSGADSVPYFRIFSPTTQTK 407

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +FDPQ  +   WLPE  +     +H      +K    +    P+V+ K +    L  +  
Sbjct: 408 KFDPQLQYSDKWLPEYRSTCFTPVH----LQEKCRTPV---EPVVEEKVSRKKALTAFRI 460

Query: 477 AK 478
           A 
Sbjct: 461 AN 462


>gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
 gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
          Length = 533

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 129/508 (25%), Positives = 206/508 (40%), Gaps = 38/508 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISA 55
           M A  A  VH  W R  LR+ DN AL      ++A      V  +FI  P       + A
Sbjct: 1   MDAKHATLVH--WFRKGLRVHDNPALTQIFSAANAAPEKFHVRPIFILDPGILDWMQVGA 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  F+  +L  + + L +        +    D       S+ ++     L +    E  
Sbjct: 59  NRWRFLQQTLHDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVEL----LTFETDIEPY 114

Query: 116 EVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            ++RD  ++K  +   I   +     +  P  ++   +    +      +++  L    +
Sbjct: 115 ALQRDAAVQKLAKAEGIKVDTHCSHTIYNPELVIAKNMGKAPITYQKFLSVVDQLKVPKV 174

Query: 175 RSLPVPAIRLTGPVTPS------------NIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
             LP    +   P                 + +    P       FP GE   L  +++ 
Sbjct: 175 LELPEKLAKKALPPKDEVEQQDDNAYDCPTLEQLVKRPEDLGPNKFPGGETEGLRRMKES 234

Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            +++++   + +    P      T+ LSPYL  G LS R    +LK   +    K     
Sbjct: 235 LRDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFHQQLK-AILKRQSKHSQPP 293

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S + +L+WREFY  + A  P+         +  +I W + +  L+AW  G TG+P IDA
Sbjct: 294 VSLIGQLLWREFYYTVAAAEPNFDRMLG-NVYCLQIPWQEQADHLEAWTHGRTGYPFIDA 352

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S
Sbjct: 353 IMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWALNAGNWMW-LS 411

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451
                  YFR+++P   GK+ DPQG +IR ++PEL   P   I+ P      +       
Sbjct: 412 ASAFFHQYFRVYSPVAFGKKTDPQGHYIRKYVPELAKYPNGCIYEPWKATLADQREYGCV 471

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           L ++YP  IV H+      + +  AA K
Sbjct: 472 LGVDYPHRIVKHELVHKENIKRMSAAYK 499


>gi|260800305|ref|XP_002595074.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
 gi|229280316|gb|EEN51085.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
          Length = 507

 Score =  340 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 128/494 (25%), Positives = 201/494 (40%), Gaps = 31/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQ 67
            + W R  LR  DN +L  A   S   V  V++      ++H     A    F+   L +
Sbjct: 9   TIHWFRKGLRFHDNPSLLHALRTS-RHVYPVYVVDQNWMKEHDIRYGANWWRFVIQCLEE 67

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L + G+     + S  D        +  + +VT+L ++   E     RD  + K  
Sbjct: 68  LDTRLRKYGLRLFVVRGSAEDF----FKEHFRKWKVTQLTHDVDTEPFYRIRDVAVRKIA 123

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               V   +     L      +        +       +   + +               
Sbjct: 124 SDMGVEVVTHVAHTLYDIDRTVERNGGTPPLTYRKFLKVYNEMGKPPKEKETATTEHFAN 183

Query: 187 PVTPS--------NIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235
              P         ++    +   +      F  GE  AL  L K  ++K +   + + + 
Sbjct: 184 CTLPPEALQDKKFDMVTLEELGMRCDFPAKFVGGETEALRRLEKSLEDKDWVLKFEKPKT 243

Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P   +  T+ LSPY+++G LS R  +++L + +       +    S   +LIWREF+  
Sbjct: 244 SPNSLLPSTTVLSPYITVGCLSARLFYHQLDKIYSKAKNHSQP-PVSLHGQLIWREFFYT 302

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
             A  P+    +       +I WNK+   L  W+   TGFP IDAAM QL   GW+H+  
Sbjct: 303 AAAHTPNFNQMEGNRV-CLQIPWNKNDEHLTRWRNAQTGFPWIDAAMTQLRKEGWIHHLA 361

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S       YFR+++P 
Sbjct: 362 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSLNAGNWMW-LSASAFFHQYFRVYSPI 420

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKA 466
           + GK+ DP+GTFIRH+LP L N P +YI+ P              +  +YP PIVDHK+A
Sbjct: 421 VFGKKTDPKGTFIRHYLPVLKNFPKEYIYEPWKAPRNVQEKAGCIVGKDYPRPIVDHKEA 480

Query: 467 CHHTLNQYYAAKKQ 480
               L+     +K 
Sbjct: 481 SQRNLDIMRDVRKD 494


>gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis]
 gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis]
          Length = 532

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 130/498 (26%), Positives = 198/498 (39%), Gaps = 36/498 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSHFIYASL 65
           + W R  LR+ DN AL    + + A      V  +F+  P       + A +  F+  SL
Sbjct: 9   IHWFRKGLRVHDNPALIQIFNKAGASPDKFSVRPIFVLDPGILDWMKVGANRWRFLQQSL 68

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           L + K+L +        +    D      D + ++     L +    E   V+RDK ++ 
Sbjct: 69  LDLDKNLKELNSRLYIVRGKPVDIFPNLFDRWNVEL----LTFETDIEPYAVKRDKAVQD 124

Query: 126 -RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
               H V   +     +  P  ++        +      ++++ L    +   P      
Sbjct: 125 IAAAHGVKVDTHCSHTIYNPEIVIAKNFGRAPITYQKFLSVVEKLKLPKVLDKPQRLPNG 184

Query: 185 TGPVTPSNIPRFFD-YPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY--YY 230
             P+         D Y    +D +           FP GE+ AL  L     ++ +   +
Sbjct: 185 VQPIADELEMGQSDVYECPTLDQLVKRPQELGINKFPGGEREALRRLDTSLSDEHWVASF 244

Query: 231 VEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            +    P      T+ LSPYL  G LS R    RL E  +    K      S + +L+WR
Sbjct: 245 EKPNTAPNSLEPSTTVLSPYLKFGCLSARLVHQRLHE-ILKRHPKHSKPPVSLVGQLLWR 303

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EFY    A  P+         +  +I W +    L AW  G TG+P IDA MRQL   GW
Sbjct: 304 EFYYTAAAVEPNFDRMLG-NVYCLQIPWQERPDHLDAWAHGRTGYPFIDAIMRQLRQEGW 362

Query: 349 MHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S       YFR
Sbjct: 363 IHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDHDWALNAGNWMW-LSASAFFHQYFR 421

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461
           +++P   GK+ D  G +IR ++PEL   P   I+ P      +       L ++YP  IV
Sbjct: 422 VYSPVAFGKKTDRTGAYIRKYVPELAKYPAGCIYEPWKATLADQREFGCVLGIDYPHRIV 481

Query: 462 DHKKACHHTLNQYYAAKK 479
           +H       + +  AA K
Sbjct: 482 NHDIVHKENIKRMSAAYK 499


>gi|145294801|ref|YP_001137622.1| hypothetical protein cgR_0748 [Corynebacterium glutamicum R]
 gi|140844721|dbj|BAF53720.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 482

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 154/499 (30%), Positives = 220/499 (44%), Gaps = 65/499 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              L+W R+DLR++DN AL  A  +    VI +FI   ++     I A    +   SL  
Sbjct: 21  PPTLLWFRDDLRLSDNAALKWAADHG--PVIGLFI---DETINRSIGAAARWWREQSLNA 75

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + LS  G+           + +E L     +  V  + +NR+Y       D  L+K L
Sbjct: 76  LAQDLSFYGVPLLRRTG----NPLEILPKIVSEMEVKAVTWNRRYHQPLCEVDATLKKNL 131

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIR 183
           + + I   S    +L  P  +       YKV+TPF KA  +        ++         
Sbjct: 132 RDQGIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPSH 191

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           LTGP          + PF A   +     GE+NA   L  F +  +  Y + RD  A   
Sbjct: 192 LTGPEGVELPIPEMEQPFWATTLVKECAPGEKNASEKLFDFLEH-LQDYPQARDSLARSA 250

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LS +L  G +S  + W        +       G   +L EL+WR+F  H +   P +
Sbjct: 251 TSKLSAHLRFGEISIHRVW-------AETAAIDSEGTELFLKELLWRDFAWHRLYALPHM 303

Query: 302 CMGKPFIPWTEKIEWNKDS----------------------HLLQAWKQGYTGFPIIDAA 339
                      +  W+ D                         L AW+ G TG P++DA 
Sbjct: 304 DTQN-VRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIPLVDAG 362

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR+L   G MHNR+RM+ ASFL K+L + WR GEE+F   L+D D ASN   WQWAA +G
Sbjct: 363 MRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWAAGSG 422

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
           +D+ PYFRIFNP  Q K+FDP  T+IR W+PE                     + +YP P
Sbjct: 423 DDASPYFRIFNPVTQAKKFDPDETYIRRWVPEYG-------------------TPSYPDP 463

Query: 460 IVDHKKACHHTLNQYYAAK 478
           IVD K++    L+ Y A K
Sbjct: 464 IVDLKESRQIALDAYSAIK 482


>gi|119715025|ref|YP_921990.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614]
 gi|119535686|gb|ABL80303.1| deoxyribodipyrimidine photo-lyase type I [Nocardioides sp. JS614]
          Length = 453

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 153/472 (32%), Positives = 227/472 (48%), Gaps = 24/472 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  ++W R DLR+ DN AL  A   +D  V+ +F+  P  W      A +  ++ ASL  
Sbjct: 5   TPAVLWFRRDLRLADNPALVEAA--ADGPVLPLFVLDPVLWG--PAGAARRAYLGASLRA 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL ++G      +     D    +          ++     +     RRD  +E+ L
Sbjct: 61  LDASLRERGTRLSVVRG----DPARLVPRAARAVGAARVHVAADFGPYGSRRDGAVEQAL 116

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                          + PG + N A   Y+V+TPF +A  ++  +      PV     TG
Sbjct: 117 TGAGAELVRTGSPYAVAPGRVTNTAGAPYRVFTPFHRAWAEHGWRG-----PVGVPEGTG 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            +  +        P        P   + A         ++V  Y E RD PA+ GTSQ+S
Sbjct: 172 WLRLAEGTAEIPDPALPDGLTLPAAGEAAARRRWAEFLDRVDEYAEDRDRPAVDGTSQMS 231

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR           DL  +  +GA ++  EL WREFY  ++   P       
Sbjct: 232 AHLKWGEIHPRTML-------ADLARRRGAGAATYRKELAWREFYADVLHARPETARQY- 283

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P   ++ +++    L AW+ G TGF ++DA MRQL   GWMHNR+RMITASFLVKDL 
Sbjct: 284 LRPEFARMRYDEPGEHLDAWRHGRTGFSVVDAGMRQLRATGWMHNRVRMITASFLVKDLH 343

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           ++W++G  +F+  L+DGDLASN  GWQW A  G D+ PYFR+FNPT QG+RFDP+G ++R
Sbjct: 344 LEWQLGARHFLRWLVDGDLASNQHGWQWTAGCGTDAAPYFRVFNPTAQGRRFDPRGEYVR 403

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            W+PEL +     +  PH        ++ YP PIVDH       L ++   +
Sbjct: 404 RWVPELAD--PDVVADPHDPSPSERQAVGYPEPIVDHAAERREALGRWERIR 453


>gi|146340206|ref|YP_001205254.1| deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS278]
 gi|146193012|emb|CAL77021.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
           (Photoreactivating enzyme) [Bradyrhizobium sp. ORS278]
          Length = 415

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 135/417 (32%), Positives = 210/417 (50%), Gaps = 17/417 (4%)

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RV 131
              G      +      + + L     +   + +++N   +    R    +E  L H  V
Sbjct: 2   QSLGSDLVIRRGP----AAQVLGQLARETNASAVYWNDVAQAGPRRVAASVEADLDHIGV 57

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVT 189
             + F D +L+ P ++     +  +V+TPF K ++           P   P +     +T
Sbjct: 58  ASRVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLALGDPPKPLPTPARLPMVPDVTGLT 117

Query: 190 PSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             ++      P  A  +   +  GE+ A   LR F +  V  Y   RD P I  TS+LSP
Sbjct: 118 VDDLRLEPTKPDWAGGLRATWQAGERAAQQRLRSFLESTVSGYAADRDRPDIDATSRLSP 177

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G ++PRQ W+  +    +   + K G   +L+E+ WREF RHL+   P +   +  
Sbjct: 178 HLRFGEITPRQIWHAARFAAEERPAQAK-GIDKFLSEIGWREFSRHLLYNNPDLA-SRNL 235

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P  +   W +D   L AW++G TG+PI+DA +R+L   G MHNR+RM+ AS LVK LL+
Sbjct: 236 QPSFDPFPWVQDDAALAAWQRGRTGYPIVDAGLRELWHTGSMHNRVRMVAASLLVKHLLI 295

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE++F   L+D D  SN   WQW A +G D+ PYFR+FNP +QG++FD  G+++R 
Sbjct: 296 DWRQGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGSYVRR 355

Query: 428 WLPELNNVPTQYIHAPHSW----LDKNDLSLN--YPLPIVDHKKACHHTLNQYYAAK 478
           W+PEL  +P   IH P +     L +  ++L   YP PI+DHK+     L  Y + +
Sbjct: 356 WVPELARLPAGVIHQPWAAKPLELAEAGVTLGRSYPTPIIDHKQGRERALAAYASLR 412


>gi|87300679|ref|ZP_01083521.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
 gi|87284550|gb|EAQ76502.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
          Length = 499

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 177/495 (35%), Positives = 234/495 (47%), Gaps = 39/495 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN  L A    + A V  VF+  P       +S  +  F+  SL ++Q 
Sbjct: 7   LFWHRRDLRLADNLGLAA-AARATAAVTGVFVFDPALLDAPDLSPARLWFLSESLRELQG 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              + G      +     D  E L           + +NR  E +   RD+ + + L+  
Sbjct: 66  RWREAGSRLLLLRG----DPAEVLPQLAQAAGAQVVAWNRDVEPDGRARDRRVAEALRAG 121

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----ADLRSLPVPAIRL 184
                +  D +L+PP ++   A   Y+VY PF ++  + + Q         + P   I L
Sbjct: 122 GCKLLADWDQLLVPPDALATGAGDPYRVYGPFFRSWRRRIEQAGAEACAPVAAPASLIDL 181

Query: 185 TGPVTPSNIPRFFDY-----------------PFQAIDPMFP-IGEQNALHILRKFCKEK 226
                P+   R +D                  PF   D      GE  A   L  F    
Sbjct: 182 DPAALPAERRRLWDQLNWLETVPTPGDGLPGAPFAGADLCPCRPGEAAAAAQLAAFADGP 241

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-SGAFSWLNEL 285
           +  Y   R++PA  GTS LS  L  G LSPRQ W   +++      + +      W  EL
Sbjct: 242 LLGYEPGRNLPAEPGTSGLSAALRFGTLSPRQAWAAAQQQRPRARSEEELQSITVWEQEL 301

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WREFY+  +  +P +  G P+ P      W  D     AW  G TG PI+DAAMRQLN 
Sbjct: 302 AWREFYQQALFHFPELAEG-PYRPQWRHFPWENDEGRFAAWCDGLTGVPIVDAAMRQLND 360

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GWMHNR RMI ASFLVKDL+VDWR GE  FM  L+DGDLA+NNGGWQW+AS+G D  P 
Sbjct: 361 SGWMHNRCRMIVASFLVKDLIVDWRWGERQFMRLLVDGDLAANNGGWQWSASSGMDPKP- 419

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLNYPLPIVDHK 464
            RIFNP  Q  RFDP+ T+IR WLPEL+ V T   I    + L++      YP PIVDHK
Sbjct: 420 LRIFNPYTQAARFDPEATYIRRWLPELSRVATADLIRGEIAPLERR----GYPGPIVDHK 475

Query: 465 --KACHHTLNQYYAA 477
             +A    L+    A
Sbjct: 476 LQQARFKALHAASVA 490


>gi|307190470|gb|EFN74495.1| Cryptochrome-1 [Camponotus floridanus]
          Length = 525

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 119/501 (23%), Positives = 182/501 (36%), Gaps = 37/501 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN +L      +      VF+  P       +   +  F+   L  + 
Sbjct: 25  TVHWFRKGLRLHDNPSLKEGLAGASTF-RCVFVLDPWFAGSTNVGINKWRFLLQCLEDLD 83

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        + L     +   T L +    E     RD  +    + 
Sbjct: 84  CSLRKLNSRLFVIRG----QPADALPKLFKEWGTTNLTFEEDSEPFGRVRDHNISALCKE 139

Query: 130 RVI-CKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             I         L     I+  +  +    Y  F+  +          S    A      
Sbjct: 140 LGISVVQKVSHTLYKLDEIIERNNGKPPLTYHQFQNIVASMNPPEPPVSTVTAACIGNAY 199

Query: 188 VTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
               +            +  F     + P++  GE  AL  L +  + K +     R   
Sbjct: 200 TPLKDDHDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKM 259

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLL-------IKPKSGAFSWLNELI 286
             Q      + LSPYL  G LS R  + +L + +  +        IK      S   +L+
Sbjct: 260 TPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKVQDDCNPIVIKKAVPPLSLHGQLL 319

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+        +    +   P   +I W+K+   L  W  G TGFP IDA M QL   
Sbjct: 320 WREFFYCAATKNSNFDRMQG-NPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREE 378

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +
Sbjct: 379 GWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDADWSVNAGMWMW-LSCSSFFQQF 437

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLP 459
           F  + P   G++ DP G +IR +LP L N PT+YIH P           K  +   Y LP
Sbjct: 438 FHCYCPVRFGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPLSIQHAAKCVIGKEYSLP 497

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +V+H K     + +     +Q
Sbjct: 498 MVNHNKTSRINIERMKQVYQQ 518


>gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
           CCMP1335]
 gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
           CCMP1335]
          Length = 556

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 134/510 (26%), Positives = 204/510 (40%), Gaps = 45/510 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           V + W R  LR+ DN AL  A     ++   +  V+I  P  ++    S  ++ F+   +
Sbjct: 14  VAMHWFRKGLRVHDNPALLHALAITKDTSGPIYPVYIVDPNCYQLLKCSVLRARFLLECI 73

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY--EINEVRRDKLL 123
             + KSL ++G            D +E L     +  VT + +      E   V RD+ +
Sbjct: 74  SDLDKSLRERGSRLYVATG----DPLEVLPELWKEWGVTHVTHEADETGEPYAVARDEGV 129

Query: 124 EK-RLQHRVICKSFDDSVLLPPGSIL-----------NHALQMYKVYTPFRKALIQNLVQ 171
                ++ V    F    L P G++            N        +      +    + 
Sbjct: 130 RSVAKKNGVQVMEFRSETLRPLGNVPGGYVANVGGAVNSVPSTMSSFQGLLGRIDGGNIP 189

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF----PIGEQNALHILRKFCK--- 224
             L +              SN     ++P    D         GE  AL  L+       
Sbjct: 190 LPLDAPTKEEFPQLSDDDDSNKYLPLEHPSDCEDASLTGIVKGGETLALAQLQSTVTARP 249

Query: 225 EKVYYYVEQRDI---PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK--PKSGAF 279
           +    + + +      +   T+ LSPYLS+G LSPR+ W+ + +       K        
Sbjct: 250 DWTASFEKPKTSCTEVSTPSTTVLSPYLSLGCLSPRKAWHAVADANRKASSKVNKTKPPV 309

Query: 280 SWLNELIWREF----YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           S   +L+WR+F         A  P         P+   + W+ D  LL+AWK G TGFP 
Sbjct: 310 SLHGQLLWRDFNNLIAHSANAQSPGSWGRMQDNPYCRNVPWSSDPKLLKAWKDGKTGFPW 369

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL T GW+H+  R   A FL + DL   W +G ++F  +LLD D A NN  W W
Sbjct: 370 IDACMAQLRTEGWIHHLGRHAVACFLTRGDLWQSWEMGADHFEGELLDADYALNNFNWLW 429

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN---- 450
            + +G     YFR ++P    K+ D  G +IR W+PEL  +P +YI+ P           
Sbjct: 430 LSCSGFF-YQYFRCYSPVAFQKKNDVNGNYIRKWVPELAGLPAKYIYEPWKAPSSVLNAA 488

Query: 451 --DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
              L  NYP PIVDH       +++   A 
Sbjct: 489 GIKLGDNYPNPIVDHAFVSKENMSKMSLAY 518


>gi|86136341|ref|ZP_01054920.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor)
           [Roseobacter sp. MED193]
 gi|85827215|gb|EAQ47411.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue lightphotoreceptor)
           [Roseobacter sp. MED193]
          Length = 470

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 146/476 (30%), Positives = 219/476 (46%), Gaps = 24/476 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R D R+ D++AL+AA  NS+  VI V +   E  + +G +      +  ++     
Sbjct: 8   IIWFRKDFRLADHQALFAAS-NSERPVIPVVVLD-ELTQTYGAAP--KWRLSKAIEHFAD 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+Q G      +      + + L +   +     +++ R Y+ + + RD  ++  L   
Sbjct: 64  RLNQVGSRLILRRGP----AAQELLALAQETGAGDIWWTRAYDPDAIARDTKVKSTLTDA 119

Query: 131 V-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               KS+   +L  P ++       +KVY+P  +A+    V A   +        T PV+
Sbjct: 120 GFKAKSWPGQLLFEPWAVKTKQGGFFKVYSPMWRAVKDLDVAAPSPAPKFLMAPETWPVS 179

Query: 190 PSNIPRFFDYPFQA----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                   D   Q     +     +GE  A   L +F    +  Y E+RD PA+  TS L
Sbjct: 180 DPLQGWQLDKGMQRGARILSAHACVGEVAANTRLAQFLDVAIDGYKERRDYPALNATSGL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G + P   W+      ++     + GA  +L EL+WREF  HL    P +    
Sbjct: 240 SENLAWGEIGPATVWHAGLRAHLE----GQRGAEHFLKELVWREFAYHLAFHTPKITQEN 295

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               W +      +   +  WKQG TG P++DAAMR+L   G MHNR RMI ASFL K +
Sbjct: 296 WKSQWNDFPWSEHEDEAVLRWKQGRTGVPLVDAAMRELYVTGHMHNRSRMIVASFLTKHM 355

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L  WRIG+++F   L+D D A+N  GWQW A  G D+ PYFRIFNP  Q K+FD +  +I
Sbjct: 356 LKHWRIGQKWFEDCLIDWDPAANAMGWQWVAGCGPDAAPYFRIFNPETQAKKFDAEQQYI 415

Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           + +L E    P     A     P +W    D    YP PIV   +  H  L  Y A
Sbjct: 416 QRFLAERAPTPGPEALAFFDACPRAWALSKDDP--YPTPIVGLAEGRHRALTAYAA 469


>gi|296271918|ref|YP_003654549.1| deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM
           7299]
 gi|296096093|gb|ADG92043.1| Deoxyribodipyrimidine photo-lyase [Arcobacter nitrofigilis DSM
           7299]
          Length = 443

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 158/473 (33%), Positives = 238/473 (50%), Gaps = 32/473 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R DLRI DNK L  A +     V+ +FI       +     ++  FIY ++L ++
Sbjct: 3   QILWFRRDLRIIDNKILEKASNE----VLPIFIFDKNILEKLDFDDKRVTFIYDAVLALK 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           KSL + G+         F D+ + + +    +   ++  +  ++   ++RDK + + L  
Sbjct: 59  KSLQELGLDLYI-----FFDTPKNVFTKLKNEGFDEVLCSCDFDSYSIKRDKQINEILP- 112

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
               K + DS L+ P   L      YKV+TPF K+L        +    +    L     
Sbjct: 113 ---LKRYLDSFLINPNKNLKKDGTPYKVFTPFYKSLSWLTSSDKIGEAMINP-NLKLSKY 168

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
            +  P   +  F+ +  +    +++  + L  F KEKV  Y + RDI    GTS L   L
Sbjct: 169 ENKTPTLDELGFERV-TLPEFLKKSPQNRLDDF-KEKVKEYEKNRDIFYKDGTSNLGVDL 226

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G LSPR  +N +K+         K  + +++ +L WREFY +++  +P+         
Sbjct: 227 RFGTLSPRMIFNEIKK-------SDKENSEAFIRQLFWREFYNYILFHFPNSENENWNGI 279

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
               I W++D    Q W +G TG PIIDAAMR  N  G MHNRLRMI +SFL K+LL+DW
Sbjct: 280 E---ISWSEDEEDFQKWCEGKTGVPIIDAAMRHFNKTGMMHNRLRMIVSSFLCKNLLIDW 336

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + GE+YF  +LLD + +SN G WQWAASTG DSVPYFRIFNP +Q  +FD +  FI+  +
Sbjct: 337 KKGEQYFAKKLLDYEASSNIGSWQWAASTGADSVPYFRIFNPYLQSAKFDKEAIFIKSVM 396

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           PEL +V  + IH   +  DK      Y   IVD K +    +  +  AK   +
Sbjct: 397 PELKDVDAKLIHIEGALKDK------YVNSIVDIKYSRDRAMRIFKEAKNAKV 443


>gi|330951089|gb|EGH51349.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae Cit 7]
          Length = 367

 Score =  339 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 138/369 (37%), Positives = 205/369 (55%), Gaps = 6/369 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L+WLR+DLR  DN AL AA        +AV++ +P QWR H  +  +  F   +L+++
Sbjct: 1   MQLIWLRSDLRAQDNTALTAAMERG--PTLAVYLLSPAQWRSHDDADCKVDFWLRNLVEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L +  +     +   +D + E L   C Q +V  L  N++Y INE RRD+ ++K ++
Sbjct: 59  EKALGELNVPLLIREADTWDQAPEVLAKLCTQFKVEGLHLNQEYGINETRRDQAVQKAME 118

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S+ D +L  PGSIL      ++V+T F+K     L +A    +  P  +    
Sbjct: 119 KAGVHFNSYLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPHPVRTPKAQPAQS 178

Query: 188 VTPS---NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +      +  + F  P +A+  ++P GE  A   +  F  E++ YY ++RD P   GTSQ
Sbjct: 179 IKSDPIPDQVKGFATPAKALRELWPAGEAEARRRMDAFADEQISYYKDERDFPTKPGTSQ 238

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ GV+SPRQC +               G  +W+NEL+WREFY+H +  YP V   
Sbjct: 239 LSAYLAAGVISPRQCLHAALASNQGEFETGNVGTVTWINELLWREFYKHTLVGYPRVSRH 298

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P TE ++W      L+AW++  TG PIIDAAMRQL   GWMHNRLRM+ A FL K+
Sbjct: 299 RAFRPETEALKWRDAPEELRAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKN 358

Query: 365 LLVDWRIGE 373
           LL+DWR GE
Sbjct: 359 LLIDWREGE 367


>gi|46390519|dbj|BAD16007.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
 gi|51536259|dbj|BAD38427.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
          Length = 560

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 131/509 (25%), Positives = 210/509 (41%), Gaps = 40/509 (7%)

Query: 12  VWLRNDLRITDNKAL-YAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSHFI 61
           VW R  LR+ DN AL  A    + A++  VF+  P   R    +           +  F+
Sbjct: 17  VWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRFL 76

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L + G      +  +  D    + +      + KL +    E   + RDK
Sbjct: 77  LESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARDK 136

Query: 122 LLEK-RLQHRVICKSFDDSVLLPPGSIL----------NHALQMYKVYTPFRKALIQNLV 170
            +        +   S     L  P  I+           +  +    Y  F     +   
Sbjct: 137 KVMDFAAASGIDVFSPVSHTLFDPAEIIEKFLFSFGKWKNGGRPPMTYQSFVAIAGEPPE 196

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEK 226
                   +P +  TG      +PR  +  +  I      +F  GE  AL  +R+   +K
Sbjct: 197 PIMEEYSELPPVGDTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRESLHDK 256

Query: 227 VY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
            +   + + +  P+      T+ LSPYL  G LS R  ++ +++ +     K  +   S 
Sbjct: 257 EWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTK-KHTNPPVSL 315

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
             +L+WR+F+  +    P+    K      ++I W ++  L  AW+ G TG+P IDA M 
Sbjct: 316 TGQLLWRDFFYTVAFGTPNFDQMKG-NKICKQIPWTENEELFPAWRDGRTGYPWIDAIMI 374

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W  S  +
Sbjct: 375 QLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMW-LSCSS 433

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSL 454
               Y RI++PT  GK++DP G +IRH++P L ++P +YI+ P +            +  
Sbjct: 434 FFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKKANCIIGK 493

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
           +YP P+VDH  A          A   + L
Sbjct: 494 DYPKPVVDHAIASKECKKMMGEAYASNRL 522


>gi|124006560|ref|ZP_01691393.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
 gi|123987973|gb|EAY27653.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
          Length = 483

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 131/474 (27%), Positives = 218/474 (45%), Gaps = 30/474 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYA 63
           V +VW RNDLR+ DN  L  A  ++D  ++ V+   P Q+    +      A ++ F+  
Sbjct: 14  VKIVWFRNDLRVHDNDVLAKAASDADY-LLPVYCFDPRQYETTSLGFAKTGAHRAQFLIE 72

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L  ++ +L  KG               E +       +   ++ +++    E    K L
Sbjct: 73  TLANLRANLEAKGSGLVIR----IGKPEEVIADLAKATQAKAVYASQEIGTEEDATVKQL 128

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           EKRL +++V  +      L+ P  +      +  V+T FRK + Q L   +  +LP    
Sbjct: 129 EKRLWKNQVFLELLWTGNLIHPADLPFPLNSLSNVFTDFRKEIEQGLKVREAVTLPDTLP 188

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKV--YYYVEQR 234
            L   V   ++P+  D       P       F  GE   L  +  +  ++    +Y + R
Sbjct: 189 LLPPGVEAGSLPKLTDLGLTHTTPDTRAVLHFKGGETAGLQRIEDYIWQRSLLQHYKDTR 248

Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + +     +++ SP+L+ G +S R  ++ +K+    ++       +  + EL+WRE++R 
Sbjct: 249 NGLLGADYSTKFSPWLANGAISARTVYHEIKKYEQQVV--KNKSTYHLVFELLWREYFRL 306

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +   Y      K  I    ++E + +     + WK G TG P IDA MR+LN  G+M NR
Sbjct: 307 VARKYGHRIFVKGGIKAKGEVEMSSNRKRTFKRWKNGETGIPFIDANMRELNATGFMSNR 366

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   AS+L KDL ++W  G  YF SQL+D D++SN   W + A  GND     R F+  
Sbjct: 367 GRQNVASYLTKDLKINWVHGAMYFESQLIDYDVSSNWCNWNYVAGVGNDPR-KDRYFDIL 425

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460
            Q  R+D +G +++HWLPEL ++P   +H PH             L  +YP PI
Sbjct: 426 SQANRYDNKGAYVKHWLPELASIPENKVHEPHQLKATEQQAYEMILGQDYPKPI 479


>gi|294678477|ref|YP_003579092.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003]
 gi|294477297|gb|ADE86685.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003]
          Length = 483

 Score =  339 bits (869), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 149/483 (30%), Positives = 228/483 (47%), Gaps = 24/483 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L+WLR D R++D+  L AA   S   V+A+FI  P         A     +  +L  
Sbjct: 5   TPILLWLRRDFRLSDHPMLSAAAA-SGRPVLALFILDP---LAEAYGAAPKWRLEQALAA 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
              +L+  G+     +      ++  L     +     ++++R  +   + RD  ++  L
Sbjct: 61  FAPALAACGVPLVLRRGP----ALAVLRQVLAESGAGAVWWSRDLDPAAIARDTEVKTAL 116

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIR 183
           +   +  +SFD  +L  P ++       Y+VYTP+ +A+    V   L     L    + 
Sbjct: 117 RAEGLEARSFDGQLLFAPWAVQTGQGGPYRVYTPYWRAVRGLTVAPPLAPVTALRPGPVL 176

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               +    + R        +     +GE  A   L +F +E +  Y  +RD  A   TS
Sbjct: 177 RGESLDALGLGRAMRRGGAVVAKYARVGEAAAQARLERFLREGIETYQARRDFLAENATS 236

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS +L+ G +SPR  W+   +   +     ++GA ++L EL+WREF  HLM +YP +  
Sbjct: 237 ELSEHLAWGEISPRVIWHAGAQAMAE----GRAGAETFLKELVWREFAWHLMFYYPRLAT 292

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              + P  +   W  +S   + W++G TG PI+DAAMR++   G MHNR RMI AS+L K
Sbjct: 293 EN-WRPDWDSFPWAGESAAAERWRRGQTGEPIVDAAMREMYVTGRMHNRARMIVASYLTK 351

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL DWRIG  +F   L+D D A+N  GWQW A  G D+ PYFRIFNP  Q ++FDP+G 
Sbjct: 352 HLLTDWRIGLAWFEDCLIDHDPAANAMGWQWVAGCGPDAAPYFRIFNPASQAEKFDPEGR 411

Query: 424 FIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + R WL E N    Q         P SW      +L+   P++D        L  Y A  
Sbjct: 412 YRRAWLAEGNRHAPQTAQDFFAAVPRSWGLVPGAALS--APLIDLAAGRDRALAAYAARP 469

Query: 479 KQS 481
           K  
Sbjct: 470 KTG 472


>gi|262201249|ref|YP_003272457.1| deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247]
 gi|262084596|gb|ACY20564.1| Deoxyribodipyrimidine photo-lyase [Gordonia bronchialis DSM 43247]
          Length = 434

 Score =  338 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 146/473 (30%), Positives = 215/473 (45%), Gaps = 49/473 (10%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++WLR DLR+ D   L AA  N   +V+  F+  P   +      R+  F++ SL ++ 
Sbjct: 6   SILWLRRDLRLGDLPPLSAAAANG--RVLVCFVVDPRLEKS--SGERRLAFLFDSLRELD 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L  + +V               +           +  +  +     RRD  + + L  
Sbjct: 62  TKLGGRLLVVSGRPDV-------EIPRLASAVDAGSVHVSEDFSPFGRRRDAAVAEALGE 114

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +S     L+ PG I       YKV+TP+ +    +  +    +    A      + 
Sbjct: 115 -IPLESVGSPYLVSPGRITKSDGDPYKVFTPYFRQWCDHGWRKPAST----AAEDLNALD 169

Query: 190 PSNIPRF--FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           P +I R      P   +    P GE+ A     +F  + +  Y   R+ P +  +S++S 
Sbjct: 170 PGDIRRSGRIRIPAAPVKLDLPAGEEAARERWSEFVVDDLDDYESGRNRPDLDVSSRMSA 229

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G + PR     L              A ++L EL +R+FY  ++  +P        
Sbjct: 230 YLKFGNIHPRTMAADLDFR--------NPSAAAYLRELAFRDFYADVLYHWPESAWHNWN 281

Query: 308 IPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               + I+ + D        AW+ G TGFPI+DA MRQL  IG+MHNR+RMITASFLVKD
Sbjct: 282 RG-FDDIDLDTDKQAYARFDAWRAGRTGFPIVDAGMRQLAAIGFMHNRVRMITASFLVKD 340

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W  G  +F+ QL+DGD+ASN  GWQWAA TG D+ PYFR+FNPT Q  +FDP G +
Sbjct: 341 LHLPWWWGARWFLDQLVDGDMASNQHGWQWAAGTGTDAAPYFRVFNPTTQADKFDPDGEY 400

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           IR W+PE                     + +YP PIVDHK      L +Y A 
Sbjct: 401 IRRWIPEYG-------------------TDDYPQPIVDHKAEREEALRRYRAL 434


>gi|72115950|ref|XP_788938.1| PREDICTED: similar to Cry5 protein [Strongylocentrotus purpuratus]
 gi|115955764|ref|XP_001189626.1| PREDICTED: similar to Cry5 protein [Strongylocentrotus purpuratus]
          Length = 559

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 124/492 (25%), Positives = 200/492 (40%), Gaps = 31/492 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LRI DN AL  A          +FI  P       +   +  F+  +L  + 
Sbjct: 41  TIHWFRKGLRIHDNPALLTAIQ-GTKVFRPIFILDPHFIESEKVGINRWRFLLETLQDLD 99

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            S    G      +     +          +  VT+L +    E    RRD+ + +  + 
Sbjct: 100 YSFRALGTRLFVVRG----NPTTVFPEIFKKWNVTRLTFEVDTEPYARRRDQEVIELAKK 155

Query: 130 R-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   +     L      +        +       L+  +    +  LP      TG  
Sbjct: 156 NDVEVITKVSHTLYDTERTIKANKYKPPMTYQRMVGLLSEIGAPAIPELPPLMANFTGVA 215

Query: 189 TPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY--YYVEQRD 235
           TP       +Y   +++ +           +P GE   L  +      K +   + + + 
Sbjct: 216 TPVKPDHDNEYGVPSLEDLGLDLEGLGPRLYPGGETEGLQRMDLHLARKSWVCGFEKPKT 275

Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P      T+ LSPYL  G LSPR+ +  +KE +            S + +LIWREF+  
Sbjct: 276 SPNSLEPSTTVLSPYLKWGCLSPRKFYYAIKEVYAQ-QTNCTKPPVSLMGQLIWREFFYT 334

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           + A  P+    +   P   ++ W+++   L AWK+G TG+P IDA M QL T GW+H+  
Sbjct: 335 VAAGTPNFHQMEE-NPICIQVPWDENPEFLAAWKEGRTGYPYIDAIMTQLRTEGWIHHLA 393

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL   W  G+E F   LLD D + N   W W +S+      Y+R+++P 
Sbjct: 394 RHSAACFLTRGDLWQSWVKGQEVFDEWLLDADYSLNAANWMWLSSSAFFHQ-YYRVYSPV 452

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
           + GK+ D  G +IR ++P LN +P +YI+ P +            +  +YP PIVDH   
Sbjct: 453 VFGKKTDKTGEYIRKYIPALNKLPAEYIYEPWTAPRSVQEAAGCIIGRDYPRPIVDHSIV 512

Query: 467 CHHTLNQYYAAK 478
               + +   A+
Sbjct: 513 SKRNIGRMKDAR 524


>gi|208780423|ref|ZP_03247764.1| deoxyribodipyrimidine photolyase family protein [Francisella
           novicida FTG]
 gi|208743791|gb|EDZ90094.1| deoxyribodipyrimidine photolyase family protein [Francisella
           novicida FTG]
          Length = 499

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 127/483 (26%), Positives = 216/483 (44%), Gaps = 31/483 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLAAEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
              L++ G            D++E  +    +  +  ++ +++   +   +RD  LEK  
Sbjct: 59  NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I              ++       K    + + + + +++A  +   +   ++  P
Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDKWALLWHQRMSEKIIRAPTKLKFICESQIKIP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
              S    + D   +        G   AL IL  F  ++   Y ++   P  A +  S+L
Sbjct: 170 TAESLGLEYDDCYKR-----QKGGRIRALRILDSFLYQRGCSYTKEMSSPVTAFKSCSRL 224

Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           SPY++ GV+S ++ + +       +KE  V    K  S   S+L+ L W   +   +   
Sbjct: 225 SPYIAFGVISLKEIYQKANQRKNEIKESRVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            S+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  
Sbjct: 285 RSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    
Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G FIR WLPEL NV ++ IH P  WL+K++ SL+YP PI+D K+A     +  Y  +
Sbjct: 403 DPNGEFIRRWLPELENVSSENIHTP--WLEKHN-SLDYPDPIIDEKQARKFAADNIYKIR 459

Query: 479 KQS 481
           K S
Sbjct: 460 KSS 462


>gi|149914833|ref|ZP_01903363.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149811626|gb|EDM71461.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 473

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 151/467 (32%), Positives = 220/467 (47%), Gaps = 27/467 (5%)

Query: 21  TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80
           +D+ AL AA       VI VFI          + A     +  SL  + + L   G    
Sbjct: 18  SDHTALGAAIARG-GPVIPVFILDD---LAEMLGAAPKWRLGLSLEDMSRRLEAMGSRLI 73

Query: 81  YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDS 139
             +     D+ + L +   +     ++++R Y+   V RDK ++  L+   +  +S++  
Sbjct: 74  LRRG----DATQTLRALATETGAGAVYWSRAYDPESVARDKAVKAALKQDGLDARSYEGH 129

Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-LRSLPVPAIRLTGPVTPSNIPRF-- 196
           ++  P ++   A   Y+VYTPF + + +  V         +PA +           R   
Sbjct: 130 LMFEPWTVETGAGGFYRVYTPFWRTVKERDVPEPEPAPSHIPAPKDWPLSDALEDWRLAA 189

Query: 197 -FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
             D       P   +GE+ A   L  F    +  Y   RD+PA  GTS LS  L++G +S
Sbjct: 190 AMDRGAAICRPYQRVGEEAAQGRLGWFTGHAIGAYDTARDLPAEDGTSGLSENLALGEIS 249

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
           PR+CW+       +     K GA +WL EL+WREF  HL    P + + + +    +   
Sbjct: 250 PRRCWHAGMRAMHE----GKPGAETWLKELVWREFAYHLAWHTPRI-VNRNWREDWDAFP 304

Query: 316 WNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
           WN+D    Q   WKQG TG P +DAAMR++   G MHNR RMI AS+L K LL  WRIG+
Sbjct: 305 WNEDEDHPQVIAWKQGRTGIPFVDAAMREMYVTGRMHNRARMIVASYLTKHLLSHWRIGQ 364

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           ++F + L D D ASN  GWQW+A +G D+ PYFR+FNP  Q ++FDP+  ++  W+ E  
Sbjct: 365 KWFEACLTDWDPASNAMGWQWSAGSGPDATPYFRVFNPETQVQKFDPKSRYLDRWIAEGR 424

Query: 434 NVPTQ----YIHA-PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
             PT     Y  A P  W    D    YP PIV  K      L  Y 
Sbjct: 425 RNPTDTALSYFEAIPRKWGLSADDI--YPEPIVSVKDGRAKALAAYE 469


>gi|240169571|ref|ZP_04748230.1| Phr protein [Mycobacterium kansasii ATCC 12478]
          Length = 444

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 152/475 (32%), Positives = 227/475 (47%), Gaps = 34/475 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+W R DLR+ D+     A   +D +V+A F+  P          R+  ++  SL 
Sbjct: 1   MARALLWFRRDLRLRDHP--ALAAAAADDEVLACFVLDPRLEAS--SGRRRLQYLGDSLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q++  L  + +V +           E +     +   + +  +  +     RRD+ +   
Sbjct: 57  QLRSDLGGRLLVTRGRPE-------ERIARIAKEIEASTVHISEDFAPFGRRRDERVRAA 109

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V   +   S LL PG +       Y+V+TPF +   +    +  R+    A  L  
Sbjct: 110 LGS-VPLVATGSSYLLSPGRVAKDDGTPYRVFTPFFRRWSELGWPSPARTGRDCARWLDP 168

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
              P       + P   +      GE  AL     F  + +  Y + RD P + GTS++S
Sbjct: 169 AQVPVEHC---EIPDPGVPLDLAAGEAAALREWGAFVDDGLERYAQDRDRPDLDGTSRMS 225

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L  G + PR     L            +GA S+L EL +R+FY  ++  +P+    + 
Sbjct: 226 AHLRFGTIHPRTMVAALDF--------SGAGARSYLRELAFRDFYAAVLYDHPASAW-RN 276

Query: 307 FIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           +    ++I  +   +  HL +AWK G TGFP+IDA MRQL   G+MHNR+RMI ASFLVK
Sbjct: 277 WNSDYDRIRTDTGSRAEHLFEAWKAGETGFPLIDAGMRQLRQTGFMHNRVRMIAASFLVK 336

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W+ G  +F+ QL DGD+ASN  GWQW A  G D+ PYFR+FNPT QG++FDP G 
Sbjct: 337 DLHLPWQWGAAWFLDQLTDGDVASNQHGWQWCAGCGTDAAPYFRVFNPTTQGQKFDPSGD 396

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +IR W+PEL+        A  + L        YP PIVDH       L +Y   +
Sbjct: 397 YIRRWVPELSA-------ATDAHLRTGKRPSGYPPPIVDHGTERAEALRRYRGMR 444


>gi|56707953|ref|YP_169849.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670424|ref|YP_666981.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457035|ref|ZP_03665508.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370442|ref|ZP_04986447.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874757|ref|ZP_05247467.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604445|emb|CAG45479.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320757|emb|CAL08862.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568685|gb|EDN34339.1| hypothetical protein FTBG_00211 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840756|gb|EET19192.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159139|gb|ADA78530.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 499

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 126/483 (26%), Positives = 214/483 (44%), Gaps = 31/483 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLASEKGD--ILPLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
              L++ G            D++E  +    +  +  ++ +++   +   +RD  LEK  
Sbjct: 59  NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I              ++            + + + + +++A  +   +   ++  P
Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDNWALLWHQHMSEKIIRAPTKLKFICENQIKIP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
              S    + D   +        G   AL IL  F  ++   Y ++   P  A +  S+L
Sbjct: 170 TAESLGLEYDDCYKR-----QKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224

Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           SPY++ GV+S ++ + +       +KE  V    K  S   S+L+ L W   +   +   
Sbjct: 225 SPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PS+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  
Sbjct: 285 PSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    
Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G FIR WLPEL NV  + IH P  WL+K++ SL+YP P +D K+A     +  Y  +
Sbjct: 403 DPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTIDEKQARKFAADNIYKIR 459

Query: 479 KQS 481
           K S
Sbjct: 460 KSS 462


>gi|83951316|ref|ZP_00960048.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM]
 gi|83836322|gb|EAP75619.1| deoxyribodipyrimidine photolyase [Roseovarius nubinhibens ISM]
          Length = 473

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 150/475 (31%), Positives = 218/475 (45%), Gaps = 36/475 (7%)

Query: 21  TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80
           +D+ AL AA       VI V I      + HG+ A     +   +  + ++L++KG    
Sbjct: 16  SDHPALRAAVARG-GPVIPVMIRDD---QMHGLGAAPKWRLGLGIEAMGRALAEKGSRLI 71

Query: 81  YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDS 139
                    + E L +   +     +++ R Y+   + RD+ +++ L    V  +S    
Sbjct: 72  LRSG----QAAEVLSALVEETGAGAVYWTRAYDPESIARDRGVKETLVAAGVEAQSHAGH 127

Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199
           +L  P  +       YKVYTP+  A+    V A L +       +T P          D+
Sbjct: 128 LLFEPWEVETGQGSYYKVYTPYWNAVKSRDVAAPLTA----PAEITAPAHWPESEDLDDW 183

Query: 200 PFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
              A          P   +GE  A   L  F  + +  Y  +RD+P   GTS LS  LS+
Sbjct: 184 ALGAAMQRGAAVCLPHQHVGEATAQGRLGAFMAQGIAEYRARRDLPGEAGTSGLSENLSL 243

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G +S RQCW+       +      +GA +W  EL+WREF  HL+   P +  G  +    
Sbjct: 244 GEISIRQCWHAAMRARQE----GAAGAETWAKELVWREFAYHLIYHTPRLASGN-WREEW 298

Query: 312 EKIEWNK--DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
           +   W +  DS  + AWKQG TG   +DAAMR++   G MHNR RM+ AS+L K LL  W
Sbjct: 299 DGFPWREAGDSPEVMAWKQGRTGVEFVDAAMREMYVTGKMHNRARMVVASYLTKHLLTHW 358

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R+G+ +F   L D D+ASN  GWQW A +G D+ P+FR+FNP  Q ++FD  G + R W+
Sbjct: 359 RVGQRWFEEHLSDWDVASNALGWQWVAGSGPDAAPFFRVFNPDTQAEKFDKGGAYRRAWI 418

Query: 430 PELNNVPTQYIHA-----PHSWLDKNDLSLNYPL-PIVDHKKACHHTLNQYYAAK 478
            E  + P     A     P SW      S  YP  PIV  K+     L  Y A K
Sbjct: 419 AEGQDAPPDTALAYFEAIPQSWNLSA--SRRYPDSPIVGLKEGRQAALAAYEARK 471


>gi|163741206|ref|ZP_02148598.1| deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis 2.10]
 gi|161385559|gb|EDQ09936.1| deoxyribodipyrimidine photolyase [Phaeobacter gallaeciensis 2.10]
          Length = 479

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 151/475 (31%), Positives = 223/475 (46%), Gaps = 26/475 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+R DLR+ +N A   A   + A VI VFI          + A     +   L  + K
Sbjct: 12  LWWVRRDLRLAENPA-LDAAVAAGAPVIPVFIFD---TLDEDLGAAPRFRLGLGLAHLAK 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-H 129
            L ++G      +      + E L     +     + + R Y+   + RD  ++K+L+  
Sbjct: 68  GLERRGARLILRRGP----AQEVLTQLITETGAGAIHWTRAYDPQAIARDTAIKKQLKGQ 123

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---DLRSLPVPA-IRLT 185
            +  KSF   +L  P ++      MY+VY+P+ K++    V         +P PA    +
Sbjct: 124 GIAAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDVDGLIAAPSRIPAPAQWPAS 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    +          +     +GE  A   L +F   +V  Y + RD PA+  TS L
Sbjct: 184 DDLDSWQLAAGMRRGADVVAQYCRVGEDAAQARLAEFLDTRVADYKQDRDFPAVDATSGL 243

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +SPR+ W+      ++     KSGA  +L E++WREF  HLM   P +   +
Sbjct: 244 SENLAWGEISPRRMWH----HGLEARRAGKSGAEHFLKEIVWREFAYHLMFHTPHILT-R 298

Query: 306 PFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            + P  E   W  +D   + AW++G TG+  +DAAMR+L   G MHNR RMI ASFL K 
Sbjct: 299 NWRPEWESFRWSEQDDDRVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVASFLTKH 358

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           +L  WRIG+++F   L+D D ASN  GWQW A +G D+ P+FRIFNP  Q ++FDP+G +
Sbjct: 359 MLTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFDPKGRY 418

Query: 425 IRHWLPELNNVPTQ-----YIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
              W+ E    P Q     Y   P SW            P VD K+     L  Y
Sbjct: 419 QSAWIAEGQANPPQTALDFYRATPLSWGLSPQDRRA--SPFVDLKEGRARALEAY 471


>gi|294011743|ref|YP_003545203.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S]
 gi|292675073|dbj|BAI96591.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S]
          Length = 500

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 139/480 (28%), Positives = 219/480 (45%), Gaps = 38/480 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+W R DLR+ D  AL AA       VI +++   +  RQ  +      +++ SL  +
Sbjct: 36  PVLLWFRQDLRLADQAALGAAVQEG--PVIPLYVLDDQAPRQWKMGGASRWWLHHSLRSL 93

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L +KG      Q     + ++ +     +    ++     YE      +K L KRL 
Sbjct: 94  DDDLRKKGSRLVLRQG----NCVDQIVQIAEETGARRVHALHHYEPWWRNAEKALGKRLD 149

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   D ++LLPPG++       Y++YTPF +A++ ++  A+    P    R+  P 
Sbjct: 150 ----LCLHDGALLLPPGAVRTGGGNSYRIYTPFARAVMDHMPPAEPVRAPS---RIDAPG 202

Query: 189 TPSNIPRFFDYPFQAIDPMF--------PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                     +      P +          GE  A   +  F  E    Y   R++P+ +
Sbjct: 203 QWPKGDSLDRWGLLPTAPDWAAAFSRDWTPGEAGARANVAAFLDEA-ADYDRARNLPSRE 261

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G+S+LSP+L  G +SP Q W ++              A ++L ELIWR++    +   P+
Sbjct: 262 GSSRLSPHLHFGEVSPAQVWRQV--------AGAPGNATTFLKELIWRDYAHTQIWAMPA 313

Query: 301 VCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                   P  + + W           AWK G TG+PI+DA MRQL T GWMHNR+RMI 
Sbjct: 314 YGSENA-RPAFDAMPWRDLREAGVDFTAWKTGRTGYPIVDAGMRQLWTTGWMHNRVRMIA 372

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASFL+K LL+DWR G  +F   L+D   A+N+  WQW A +G D+  + RI  P  Q ++
Sbjct: 373 ASFLIKHLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMAPLTQSEK 432

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           F+    +IR W+PEL ++    IH P +   +     +YP   +DH++     L  +   
Sbjct: 433 FEA-ADYIRKWVPELAHLNDDVIHDPEAHDARPA---DYPAKCIDHREGRERALAAWRRI 488


>gi|145881069|gb|ABP97098.1| cryptochrome CRY1 [Acropora millepora]
          Length = 552

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 126/500 (25%), Positives = 199/500 (39%), Gaps = 32/500 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
                + W+R DLR+ DN +L  A   SD  V  +++   +     GI      F+  SL
Sbjct: 25  KAKHAIHWVRKDLRLHDNPSLLEAVKGSDT-VRIIYVLDTKVDHATGIGLNLWRFLLQSL 83

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             V  SL +        +        +       + + + L +    E     +D  +  
Sbjct: 84  EDVDDSLRKLNSRLFVVRG----QPADVFPRLFREWKTSFLTFEEDSEPFGREKDAAIRL 139

Query: 126 RLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             Q   +  +      L  P  I+ H      +      A++++L         +    L
Sbjct: 140 LAQESGVEVAVGRSHTLYDPQLIIKHNSGTAPLTYKKFLAIVRSLGNPQHPCATLDVHLL 199

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVY--YYV 231
            G  TP +      +   ++  +           +  GE  AL  L +  + K +   + 
Sbjct: 200 GGCSTPVSEDHEEKFGVPSLKELGLDVAKLSTEIWHGGETEALIRLDRHLERKAWIASFE 259

Query: 232 EQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           + +  P       + LSPYL  G LSPR  ++RL E +  +  K K    S   +L+WRE
Sbjct: 260 KPKVTPNSLFPSPTGLSPYLRFGCLSPRLFYHRLSELYRKV--KCKDPPISLYGQLLWRE 317

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+  + A  P+        P   +I W  +   L+ W+QG TGFP IDA M QL   G +
Sbjct: 318 FFFTVAANNPNFDQMDE-NPVCLQIPWTANPEWLKKWEQGQTGFPWIDAIMIQLKQEGXI 376

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R     FL + DL + W  G + F   LLD + + N G W W  S       +F  
Sbjct: 377 HHLARHAVGCFLTRGDLWISWEEGMKVFERWLLDAEWSLNAGNWMW-LSCSAFFQQFFNC 435

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVD 462
             P   G++ DP G ++R +LP L   P +YIHAP +  +      +  +  +YP PIVD
Sbjct: 436 ICPVGFGRKLDPNGDYVRKYLPVLKGFPAKYIHAPWTAPENVQRAARCIIGKDYPRPIVD 495

Query: 463 HKKACHHTLNQYYAAKKQSL 482
           H K     L +     K  L
Sbjct: 496 HHKVSTANLEKMRNVFKALL 515


>gi|290510440|ref|ZP_06549810.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55]
 gi|289777156|gb|EFD85154.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55]
          Length = 295

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 168/273 (61%), Positives = 202/273 (73%), Gaps = 2/273 (0%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           +F   E+ AL  LR FC++    Y  QRD PA++GTS+LSP L+ GVLSPRQC +RL  E
Sbjct: 15  LFAADEKTALARLRAFCQQPAAEYEGQRDFPAVEGTSRLSPCLATGVLSPRQCLHRLLTE 74

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
               L        +WLNELIWREFYRHLM +YP +C G+PFI WT+K+ W +D   LQAW
Sbjct: 75  HPAALDGGAGA--TWLNELIWREFYRHLMVYYPKLCKGRPFIAWTDKVAWREDDAALQAW 132

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           ++G TGFPI+DAAMRQLN  GWMHNRLRMI ASFL KDL +DWR GE YFMSQL+DGDLA
Sbjct: 133 QRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLRLDWRAGERYFMSQLIDGDLA 192

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           +NNGGWQWAASTG D+ PYFRIFNPT QG++FD QG F+R WLPEL  VP + +H P +W
Sbjct: 193 ANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFMRRWLPELAKVPEKALHQPWAW 252

Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            DK  + L+YP PIVDHK+A   TL  + AA+K
Sbjct: 253 ADKQGIKLDYPRPIVDHKQARQETLAAWEAARK 285


>gi|254586765|ref|XP_002498950.1| ZYRO0G22418p [Zygosaccharomyces rouxii]
 gi|238941844|emb|CAR30017.1| ZYRO0G22418p [Zygosaccharomyces rouxii]
          Length = 557

 Score =  336 bits (862), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 152/493 (30%), Positives = 243/493 (49%), Gaps = 32/493 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYA 63
           +   + W RNDLRI DN   Y A   S    A+++ +F      W  H  S  +   +Y 
Sbjct: 70  VKTVIHWFRNDLRIHDNTGFYTAVEESQRLGARILTIFTINQNDWIAHLDSNPKLTLMYQ 129

Query: 64  SLLQVQKSLSQKGIVFQYH-------QCSNFDDSIEWLDSYCLQQRVTKLF--YNRQYEI 114
           SL  +   LS+ GI            + SN    + WL   CL+     ++   N +Y  
Sbjct: 130 SLKSLHGKLSELGIPLYTLVFDSGEPKLSNSMQFVIWLRDQCLKISNGAIYLTANAEYLA 189

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +E+ RD  +      +     F D+ ++ PG +  +    Y V++P+ K     ++    
Sbjct: 190 DELYRDIRVFAVSDEKFQFNVFHDTCIVEPGVLKTNQDSPYTVFSPWYKKWCLRVMDGKS 249

Query: 175 RSLPVPAIRLTGPV---TPSNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEKV 227
            +  +  + L   +       + + F Y     F +   +    E  A   L  F ++ V
Sbjct: 250 STNLIEPLVLEKRIYNDDEEFVHKEFSYYLPSQFLSSTTIPDASEDAAWSRLTTFLQKNV 309

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPR----QCWNRLKEEFVDLLIKPKSGAFSWLN 283
             Y++ +D    + +S LSPYL++G+LS R    + +  +    V    K  +    ++ 
Sbjct: 310 GNYLD-KDTLLTEASSHLSPYLALGILSARCVVNEAFRLVGSRLVGKSPKDMTPVEQFIR 368

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           E+ WR+FY+ ++ F+P + M  PF   + +I+W+ +    Q W  G TGFPI+DA MR+L
Sbjct: 369 EVAWRDFYKDVICFWPYLSMDIPFNLSSLEIKWDNNFSNFQKWCLGKTGFPIVDAIMRKL 428

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           +  G+++NR RMITASFL K+LL+DWR GE++F   L+D DLASN GGW + +STG D+ 
Sbjct: 429 SQDGYINNRARMITASFLSKNLLIDWRWGEKWFRKHLIDCDLASNVGGWGFVSSTGADAQ 488

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           PYFR+FN   Q + FDP G FI+ W+PEL N  ++ +H+    ++       YP PI D 
Sbjct: 489 PYFRVFNMERQSRAFDPNGEFIKKWVPELKN--SKNVHSSIQEVES------YPNPITDS 540

Query: 464 KKACHHTLNQYYA 476
           K +    L  Y  
Sbjct: 541 KSSRQRALEIYNE 553


>gi|318042779|ref|ZP_07974735.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101]
          Length = 510

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 167/510 (32%), Positives = 226/510 (44%), Gaps = 51/510 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ DN  L      +   V  VF+  P       ++  +  F+  SL ++Q+
Sbjct: 7   LFWHRRDLRLADNLGLAT-AAAATPAVTGVFVLDPAILGAPDMAPARVWFLLESLRELQQ 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S  + G      +     D  + L           + +NR  E     RD+ +   LQ  
Sbjct: 66  SWREAGSRLFVLEG----DPEQVLPQLAEALAAPVVAWNRDVEPYGRARDRRVAAALQAA 121

Query: 131 VICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------------------- 168
                   D +L+ P ++       Y+VY PF +                          
Sbjct: 122 GRKVLVDWDQLLVAPEALKTGGGDPYRVYGPFLRNWRGQVERKAAAGSALSGGVEPVAAP 181

Query: 169 --LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKF 222
             LV  D  +LP P   L   +   +     +   QA D         GE  AL  L+ F
Sbjct: 182 AGLVDLDPEALPEPRSALWAQLPLRDSLPTLEELSQAFDGGDLCPCRPGEAAALVQLQAF 241

Query: 223 CKEKVYY--------YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL---- 270
           C              Y   R++P   GTS LS  L  G LSPRQ W   ++         
Sbjct: 242 CDGGGASSSRIPLFAYEPGRNMPGEAGTSGLSAALKFGTLSPRQAWAAAQQARQVAEALG 301

Query: 271 -LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
              +  +    W  EL WREFY+  +  +P +  G P+ P   +  W+      +AW +G
Sbjct: 302 GAEEAIASIGVWEQELAWREFYQQALFHFPELAEG-PYRPQWRQFPWDNHQGHYEAWCEG 360

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG PIIDAAMRQLN  GWMHNR RMI AS+LVKDL+ DWR GE  FM +L+DGDLA+NN
Sbjct: 361 LTGMPIIDAAMRQLNESGWMHNRCRMIVASYLVKDLICDWRWGETAFMQRLVDGDLAANN 420

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
           GGWQW+AS+G D  P  RIFNP  Q  +FDP G +IRHWLPEL +V T+ + +      +
Sbjct: 421 GGWQWSASSGMDPKP-LRIFNPATQASKFDPTGAYIRHWLPELRHVNTKDLLSGEIAPME 479

Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
                 YP  +V HKK        Y +  K
Sbjct: 480 RR---GYPAQVVSHKKQQARFKALYASLPK 506


>gi|333028704|ref|ZP_08456768.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
           Tu6071]
 gi|332748556|gb|EGJ78997.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
           Tu6071]
          Length = 481

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 223/475 (46%), Gaps = 22/475 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A  A+   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +A ++ F+
Sbjct: 22  PAEPAVKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFL 80

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  +   L ++G            +  + +          ++            R  
Sbjct: 81  ADCLGDLDAGLRERGGRLVVR----AGEPAQVVRELVGSTGAERVHVAAGVSAYARNRAD 136

Query: 122 LLEKRLQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            L   L+         ++V+  LPPG ++  +   + V+TP+ +      ++  L +   
Sbjct: 137 RLRAALEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAP-- 194

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             + +   V    +PR  D        +   GE+     L  + ++ +  Y +  D  A 
Sbjct: 195 RKLSVPSKVRSDGVPRREDVE-GVSPGLARGGEREGRARLADWRRDGISRYEDLHDDLAG 253

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            GTS+LSPYL  G LS  +C +R +           +GA +++ +L WR+F+  ++A  P
Sbjct: 254 DGTSRLSPYLHFGALSAAECVHRARAV-------GGAGADAFVRQLCWRDFHHQVLAARP 306

Query: 300 SVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +    + + P  +      D+     AW++G TG+P++DAAMRQL   GWMHNR R++ A
Sbjct: 307 AAA-HEDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAA 365

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL K L +DWR+G  +F+  L+DGDL +N   WQW A TG D+ P  R+ NP  Q +++
Sbjct: 366 SFLTKTLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQARKY 424

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           DP+G ++RHW+PEL  +  + +H P  W    +    YP P+VD  +        
Sbjct: 425 DPEGDYVRHWVPELRGIEGRAVHEP--WKRPREEREGYPEPLVDLAEGRDRFRRA 477


>gi|119389332|pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus
           Tokodaii With Two Fad Molecules: Implication Of A Novel
           Light-Harvesting Cofactor
 gi|119389333|pdb|2E0I|B Chain B, Crystal Structure Of Archaeal Photolyase From Sulfolobus
           Tokodaii With Two Fad Molecules: Implication Of A Novel
           Light-Harvesting Cofactor
 gi|119389334|pdb|2E0I|C Chain C, Crystal Structure Of Archaeal Photolyase From Sulfolobus
           Tokodaii With Two Fad Molecules: Implication Of A Novel
           Light-Harvesting Cofactor
 gi|119389335|pdb|2E0I|D Chain D, Crystal Structure Of Archaeal Photolyase From Sulfolobus
           Tokodaii With Two Fad Molecules: Implication Of A Novel
           Light-Harvesting Cofactor
          Length = 440

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 148/471 (31%), Positives = 232/471 (49%), Gaps = 48/471 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69
           +   R DLR+ DN  L  A    D +VI VFIA P Q       S     F+  SLL++ 
Sbjct: 4   IFIFRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELD 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L +KG          F ++ + +  +    +V  ++ N  Y    + RD+ + K  + 
Sbjct: 63  DELRKKGSRLNV----FFGEAEKVVSRFF--NKVDAIYVNEDYTPFSISRDEKIRKVCEE 116

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  K+++D +L P       +L  ++ +T F   + +  V+          +  +  V
Sbjct: 117 NGIEFKAYEDYLLTP------KSLFHHRNFTSFYNEVSKVKVREP------ETMEGSFDV 164

Query: 189 TPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           T S++   F   F+ I+ P+F  G +  L++L +    +      +RD PA     +LSP
Sbjct: 165 TDSSMNVDFLLTFKKIESPLFRGGRREGLYLLHRNVDFR------RRDYPAENNNYRLSP 218

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +S R+ +              + G   ++ EL WR+F+  L  + P V  G  +
Sbjct: 219 HLKFGTISMREAYYT------------QKGKEEFVRELYWRDFFTLLAYYNPHV-FGHCY 265

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + I W  +    +AWK+G TG+PIIDA MR LN+ G+++ R+RM+ A FLVK L V
Sbjct: 266 RREYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFV 325

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YF ++L+D D A NNG WQW ASTG D    FR+FNP  Q ++FDP+  FI+ 
Sbjct: 326 DWRWGERYFATKLVDYDPAINNGNWQWIASTGVD--YMFRVFNPWKQQEKFDPEAKFIKE 383

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           W+ EL +VP   IH+ +           YP PIV+  +  ++  ++Y   K
Sbjct: 384 WVEELKDVPPSIIHSIYKTKVP-----GYPSPIVNWLERVNYVKSEYKNVK 429


>gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex]
          Length = 553

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 115/493 (23%), Positives = 187/493 (37%), Gaps = 32/493 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R  LR+ DN +L             +FI  P       +   +  F+  SL  + +
Sbjct: 14  VHWFRKGLRLHDNPSLKDGLKGCSTY-RCIFILDPWFAGSSNVDINKWRFLLESLEDLDQ 72

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
           +L +        +          L     +   T L +    E     RD+ +    +  
Sbjct: 73  NLRKLNSRLFVIRGQPAG----VLPKLFKEWETTCLTFEEDPEPFGRVRDQNIITMCKDF 128

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +   +     L  P  I+        +     + +I ++         +    +    T
Sbjct: 129 NIEVITRASHTLYHPQKIIEKNGGKAPLTYRQFQNIIASVDAPPPPESDITFESIGRGYT 188

Query: 190 PSN--------IPRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           P +        +P   +  F     +  ++  GE  AL  L +  + K +     R    
Sbjct: 189 PMDESMDDRFSVPTLEELGFDTDGLMPAVWHGGETEALTRLERHLERKAWVASFGRPKMT 248

Query: 239 IQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            Q      + LSPYL  G LS R    +L   +    IK      S   +++WREF+   
Sbjct: 249 PQSLLASQTGLSPYLRFGCLSVRLFHQQLTNLYKK--IKKAQPPLSLHGQVLWREFFYCA 306

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   +I W+ ++  L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 307 ATNNPNFDKMIG-NPICVQIPWDSNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLAR 365

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P  
Sbjct: 366 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGTWMW-LSCSSFFHQFFHCYCPVR 424

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G FI+ + P L N P QYIH P +  +      K  +  +YPLP+V+H +  
Sbjct: 425 FGRKVDPNGDFIKKYQPVLKNFPLQYIHEPWNAPESVQRAAKCVIGKDYPLPMVNHLEVS 484

Query: 468 HHTLNQYYAAKKQ 480
              + +     ++
Sbjct: 485 QLNIERMKQVYQR 497


>gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum]
 gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum]
          Length = 512

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 122/495 (24%), Positives = 194/495 (39%), Gaps = 33/495 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LRI DN +L     N+      +FI  P       +   +  F+   L  + 
Sbjct: 6   TVHWFRKGLRIHDNPSLREGLINAKTF-RCIFILDPWFAGASNVGINKWRFLLQCLSDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        E L     Q   T   +    E     RD+ ++     
Sbjct: 65  NSLKKLNSRLFVIKG----QPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMCSE 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   +     L     I+N       +     + L++ +   +     +    L    
Sbjct: 121 MGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQKLLECIDPPERAVPSIDKEFLGNAF 180

Query: 189 TPSNI--------PRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK--VYYYVEQR 234
           TP           P   +  F+ I+ +    +  GE  AL  L+   + K  +  + + +
Sbjct: 181 TPIKYDHDEIFGVPTLEELGFKEINNITRHVWVGGETEALIRLQCHLERKAFIASFGKPK 240

Query: 235 DIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
             P   +   + L+PYL  G LS R  ++ L E +    I+      S   +L+WR+F+ 
Sbjct: 241 MTPQSLVASPTGLAPYLKFGCLSTRLFFSELNELYKK--IRKSQPPLSLHGQLLWRDFFY 298

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                 P+        P   +I W+K+   L  W  G TG+P IDA M QL   GW+H  
Sbjct: 299 CASTNNPNFDRM-VGNPICVQIPWDKNPRALSKWANGQTGYPWIDAIMIQLRQEGWIHCI 357

Query: 353 LRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
            R   A FL + DL + W  G + F   LLD D + N G W W  S  +    +   + P
Sbjct: 358 ARHAVACFLTRGDLWLSWEEGMKVFDELLLDADWSVNAGYWMW-YSCSSFYQEFIHCYCP 416

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKK 465
              G++ DP G +IR ++P LNN+P QYIH P    +         + ++YPLPIV+H  
Sbjct: 417 VRFGRKVDPNGDYIRRYIPALNNMPNQYIHEPWLAPESIQFSANCIIGIDYPLPIVNHIN 476

Query: 466 ACHHTLNQYYAAKKQ 480
           A    L +   A +Q
Sbjct: 477 ASKINLERMKLAYQQ 491


>gi|15921125|ref|NP_376794.1| deoxyribodipyrimidine photolyase [Sulfolobus tokodaii str. 7]
 gi|15621910|dbj|BAB65903.1| 432aa long hypothetical deoxyribodipyrimidine photolyase
           [Sulfolobus tokodaii str. 7]
          Length = 432

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 148/471 (31%), Positives = 232/471 (49%), Gaps = 48/471 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQ 69
           +   R DLR+ DN  L  A    D +VI VFIA P Q       S     F+  SLL++ 
Sbjct: 4   IFIFRRDLRLEDNTGLNYALSECD-RVIPVFIADPRQLINNPYKSEFAVSFMINSLLELD 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L +KG          F ++ + +  +    +V  ++ N  Y    + RD+ + K  + 
Sbjct: 63  DELRKKGSRLNV----FFGEAEKVVSRFF--NKVDAIYVNEDYTPFSISRDEKIRKVCEE 116

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  K+++D +L P       +L  ++ +T F   + +  V+          +  +  V
Sbjct: 117 NGIEFKAYEDYLLTP------KSLFHHRNFTSFYNEVSKVKVREP------ETMEGSFDV 164

Query: 189 TPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           T S++   F   F+ I+ P+F  G +  L++L +    +      +RD PA     +LSP
Sbjct: 165 TDSSMNVDFLLTFKKIESPLFRGGRREGLYLLHRNVDFR------RRDYPAENNNYRLSP 218

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +S R+ +              + G   ++ EL WR+F+  L  + P V  G  +
Sbjct: 219 HLKFGTISMREAYYT------------QKGKEEFVRELYWRDFFTLLAYYNPHV-FGHCY 265

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + I W  +    +AWK+G TG+PIIDA MR LN+ G+++ R+RM+ A FLVK L V
Sbjct: 266 RREYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFV 325

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR GE YF ++L+D D A NNG WQW ASTG D    FR+FNP  Q ++FDP+  FI+ 
Sbjct: 326 DWRWGERYFATKLVDYDPAINNGNWQWIASTGVD--YMFRVFNPWKQQEKFDPEAKFIKE 383

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           W+ EL +VP   IH+ +           YP PIV+  +  ++  ++Y   K
Sbjct: 384 WVEELKDVPPSIIHSIYKTKVP-----GYPSPIVNWLERVNYVKSEYKNVK 429


>gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
          Length = 540

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 131/515 (25%), Positives = 207/515 (40%), Gaps = 46/515 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  +V + W R  LR+ DN A   A      +V  VF+  P   +   +   + +F+  S
Sbjct: 2   SGGAVSIHWFRKGLRLHDNAA-LLAALKGAKQVYPVFVLDPHFAKPEFVGVVRYNFLLES 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  + KSL   G      +       ++ L+    +  VT+L + R  E     RD    
Sbjct: 61  LRDLDKSLRTLGSRLYVLKGKP----LQALEEKFKEWEVTRLTFERDTEPYAKLRDTQAR 116

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFR------------KALIQNLVQ 171
           +   +H +   +     L  P   +  A    K+   +              A +    +
Sbjct: 117 ELAEKHGIEVITTVGHTLHDPEQYIAKAGGADKIPLTYSSFGTLFRRLGKVPAALSAPTK 176

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHILRKFCKEKV 227
            D                  ++P   D  ++  D      FP GE  AL  +R+  + K 
Sbjct: 177 EDFPQSSTLVRTDALDDHRFDVPSLKDMGYEWNDDEHEVRFPGGETEALERMRRHLQRKA 236

Query: 228 Y--YYVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           +  ++ + +  P      T+ LSPYL  G LSPR  ++ L   + +     K    S   
Sbjct: 237 WIAHFEKPKTSPNTLEPSTTGLSPYLKFGCLSPRLFYHELARVYAEYRDHAKP-PVSLHG 295

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +L+WREF+        +    +       +I+W+ +  LL AW+   TG+P IDA M QL
Sbjct: 296 QLLWREFFHMCGYAVKNFDRMEGNR-ICRQIDWDTNDALLAAWENARTGYPWIDACMTQL 354

Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
              GW+H+  R   A FL + DL   W  G + F   L+D D   N+  W W  S  +  
Sbjct: 355 RREGWLHHLARHAVACFLTRGDLYQSWEKGAQVFDRLLVDADWHLNSANWMW-LSCSSFF 413

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNY 456
             YFR+++P   GK+ DP G +IR +LP+L   P +YI+ P              +  +Y
Sbjct: 414 YQYFRVYSPVAFGKKTDPSGAYIRKYLPQLKAFPDKYIYEPWKAPPGVQRSCGCIIGKDY 473

Query: 457 PLPIVDHKK------ACHH----TLNQYYAAKKQS 481
           P PIVDH +      A        L Q   AKK +
Sbjct: 474 PEPIVDHAEVSAANKARIRACYDALKQAEKAKKTT 508


>gi|302790279|ref|XP_002976907.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
 gi|300155385|gb|EFJ22017.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
          Length = 499

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 126/480 (26%), Positives = 214/480 (44%), Gaps = 36/480 (7%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SA 55
            +     V ++W RNDLRI DN+AL+ A  +S + V+ V+   P  +             
Sbjct: 17  SSRNGKGVSIMWFRNDLRIVDNEALFKAWASS-SSVLPVYCVDPRHFGTTHYFKFPKTGE 75

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++ F+  SL+ ++K+L ++G+       +        L           ++   +    
Sbjct: 76  LRAQFLLESLVDLKKNLKKRGLDLVIRSGNPEF----ILPLLVEAVGAHTIYAQEETCSE 131

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E++ +K ++K +  +   +    + +     +     ++  VYT FRKA+  +       
Sbjct: 132 ELQVEKAVKKSIGTKAKLELVWGTTMYHLNDLPFTTARLPDVYTQFRKAVESSSRVRPCL 191

Query: 176 SLPVPAIRLTGPV-----TPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCK 224
            LP     L   +         +P   D   +  +        F  GE  A+  L ++  
Sbjct: 192 KLPQTLGPLPDSLGEKVGDLDKVPNLSDLGLRPREQVSLAAMQFTGGETAAIQRLCEYFW 251

Query: 225 EKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
            K     Y E R+ +     +++ SP+L+ G +SPR  +     ++        +  +  
Sbjct: 252 TKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIYEEASIKYEKERT-ANNSTYWV 310

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           L ELIWR+++R L   Y +               W++D  L +AW+ G TG+P+IDA MR
Sbjct: 311 LFELIWRDYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTLFEAWRTGTTGYPLIDANMR 370

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   G+M NR R I  SFLV+D+ +DWR+G E+F S LLD D  SN G W + A  GND
Sbjct: 371 ELYATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLDYDPCSNYGNWTYGAGVGND 430

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
                R F+   Q + +DP G+++ HW+P+L  +PT   H+P          + Y   IV
Sbjct: 431 PRE-DRYFSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHSPK---------VGYLKKIV 480


>gi|294507180|ref|YP_003571238.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
 gi|294343508|emb|CBH24286.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
          Length = 483

 Score =  335 bits (860), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 214/485 (44%), Gaps = 33/485 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIY 62
           S  LVW+RNDLR+ D+  L  A  + D +VI V+   P  +         +S+ ++ F+ 
Sbjct: 3   STALVWIRNDLRVRDHAPLRYAADHYD-QVIPVYCFDPRHFGTTMFDLPKMSSIRARFLR 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  ++ S+   G      +    D     L     Q    ++   ++    E   +  
Sbjct: 62  ESVQDLRDSVQDLGADLVVRRGRPED----ILPELVRQTGANEVLQFQEIGGEEEDVETA 117

Query: 123 LEKRLQHRVICKSF-DDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           +E  L+       F     L     +  +    + KVYT FRKA+ +          P  
Sbjct: 118 VEDALRDTGATPGFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDS 177

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFCK--EKVYYYV 231
            + L   + P +IP   +  F     +       F  GE      + ++    + +  Y 
Sbjct: 178 LLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEYIWRGDFLKKYK 237

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             R+ +     +++ S +L+ G ++PRQ    + E + D  +  KS  +    ELIWR+F
Sbjct: 238 ATRNGLLGANYSAKFSAWLAHGCITPRQIHEEV-ERYEDQRVDNKS-TYWMKFELIWRDF 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           + ++             I   + I+W       + W  G TG P +DA MR+LN  G+M 
Sbjct: 296 FSYVTWKAGERLFRPGGINGND-IDWRYYDESFERWAAGTTGIPFVDANMRELNRTGYMS 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   AS L + L +DWR+G  YF S+L+D D+ASN G W + +  GND  P  R FN
Sbjct: 355 NRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNWAYNSRVGND--PRARYFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
              Q KR+D  G ++R+WLPEL +VP +Y+H PH    +        L  +YP P+VD  
Sbjct: 413 IVKQAKRYDENGEYVRYWLPELADVPDKYVHEPHRMSHEQQKKYGCVLGADYPKPVVDLD 472

Query: 465 KACHH 469
           K    
Sbjct: 473 KTYQR 477


>gi|319442565|ref|ZP_07991721.1| deoxyribodipyrimidine photolyase [Corynebacterium variabile DSM
           44702]
          Length = 492

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 152/512 (29%), Positives = 222/512 (43%), Gaps = 62/512 (12%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA-TPEQWRQHGISARQSH 59
           M   +AM+  LVW R+DLR+ DN AL  A      +VIAV I             A  S 
Sbjct: 1   MTDRSAMT--LVWFRDDLRLADNAALEWAAQ--GGEVIAVVIDEDAAATGVRPRGAAASW 56

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           +   SL Q+   L + G+   +       D ++ + +      V  + +NR+YE      
Sbjct: 57  WRERSLSQLAGRLLEHGVPMLHL----AGDPVDIMTALPGLLAVDAVVWNRRYEEPLRFV 112

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  +++ LQ       SF   +L  P  +     + Y+V+TP+ +A     V  D  +  
Sbjct: 113 DSRIKETLQAGGTEVHSFPGHLLTEPWQVTTGEGRPYRVFTPYSRA--ATPVAEDAVAQL 170

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDP------------MFPIGEQNALHILRKFCKEK 226
           V A                + PF  + P             +  GE+     L  F    
Sbjct: 171 VEAAAQVPADLRGPEKDLPEVPFPPVRPVDPAPWAASLADHWTPGEEAGQATLAAFVTGD 230

Query: 227 VY-------YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
                     Y + RDIP    T+ LSP+L  G +SP + W  +    VD    P +   
Sbjct: 231 RRTTATGSPGYADGRDIPDADATTGLSPHLRFGEVSPHRVWYAVARA-VDAGDVPAADGS 289

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD----------------SHLL 323
           +  +EL+WR+F    +   P +   +       +  W  D                +  L
Sbjct: 290 ALHSELLWRDFAWQRLYHRPDLA-SRCVREQFTQFPWRWDNSLPGDVKHLGDATALAQDL 348

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            AW+ G TG P++DA MR+L T GWMHNR+RM+  SFL K+LL DWR GE++F   L+D 
Sbjct: 349 SAWRSGTTGIPLVDAGMRELWTTGWMHNRVRMVVGSFLTKNLLADWRHGEQWFWDTLVDA 408

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           D ASN   WQW A  G+D+ PYFRIFNP  Q K+FDP+  ++  W+PE   V  +  HA 
Sbjct: 409 DPASNPFNWQWVAGCGDDASPYFRIFNPETQRKKFDPELGYVNRWVPEF--VGPEAAHAG 466

Query: 444 HSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
                       YP P+VD +++    L  Y 
Sbjct: 467 P-----------YPPPMVDLRESRQRALAAYE 487


>gi|134302253|ref|YP_001122222.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050030|gb|ABO47101.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 499

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 125/483 (25%), Positives = 213/483 (44%), Gaps = 31/483 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I   E W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLASEKGD--ILPLYIIELELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
              L++ G            D++E  +    +  +  ++ +++   +   +RD  LEK  
Sbjct: 59  NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I              ++            + + + + +++A  +   +   ++  P
Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFICENQIKIP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
              S    + D   +        G   AL IL  F  ++   Y ++   P  A +  S+L
Sbjct: 170 TAESLGLEYDDCYKR-----QKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224

Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           SPY++ GV+S ++ + +       +KE  V    K  S   S+L+ L W   +   +   
Sbjct: 225 SPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PS+        + +      +    +AWK G TG+P+IDA MR L   GW++ R+R +  
Sbjct: 285 PSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRALIATGWLNFRMRAMLM 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    
Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G FIR WLPEL NV  + IH P  WL+K++ SL+YP P +D K+A     +  Y  +
Sbjct: 403 DPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTIDEKQARKFAADNIYKIR 459

Query: 479 KQS 481
           K S
Sbjct: 460 KSS 462


>gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 559

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 138/549 (25%), Positives = 203/549 (36%), Gaps = 76/549 (13%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M      +  + W R  LR+ DN AL  AC ++ A V  +F+  P       + A +  F
Sbjct: 1   MGGEDKTTRSIHWFRKGLRVHDNPALVDACADATA-VQPIFVLDPWFLTPSRVGANRVRF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL  +G      +          L          +L +    E     RD
Sbjct: 60  LLQSLTDLDASLRARGSSLLVLRGDPKAVVPAAL----RAWGCDRLTHEVDTEPYASARD 115

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNH--ALQMYKVYTPFRKALIQNLVQADLRSL 177
             +    +      K+F    L     +L+          Y  F K        A     
Sbjct: 116 AAVRDAAKRVGAEVKTFASHTLYDMERLLSKCPKGAPPTSYASFLKIAGSCGAVAKPAPP 175

Query: 178 PVPAIRLTGP----------------VTPSNIPRFFDYPFQAI--DPMFP--IGEQNALH 217
           P  ++  +                       +P   +  +  +  D  FP   GE   L 
Sbjct: 176 PPASMPGSPDGKSHVELVAMIEDVVSSAEVGVPTLEELGYPELPDDEGFPARGGETEGLD 235

Query: 218 ILRKFCKEKVYYYVEQRDIPA--------------------------------------- 238
            LR+    K +    Q+ + +                                       
Sbjct: 236 RLRRMLSRKTWIAEFQKPMTSPTSLWAVVGADGKTQKPANPFEAASKASKSKTVGAEAFL 295

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              T+ LSPYL  G +SPR  ++ LK+   D   K  +   S   +L+WREFY       
Sbjct: 296 APSTTALSPYLKFGCVSPRTFYHELKDVLNDAKGKHSAPPVSLEGQLLWREFYYLAAFGT 355

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P+    +   P   +I W  D   L AW++G TGFP IDA M QL   GW+H+  R   A
Sbjct: 356 PNYHKMEG-NPICRQIPWTWDEERLAAWEEGRTGFPWIDACMHQLRQEGWLHHLARHAVA 414

Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            FL + DL V W  G + F   L+D D A N G W W  S       YFR++ P   GK+
Sbjct: 415 CFLTRGDLFVHWEAGAKVFDRDLVDADPALNYGNWMW-LSCSCFFYQYFRVYGPVSFGKK 473

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471
           +D  GTFIR +LP L ++P +YI+ P +            + ++YP PIVDH  A    +
Sbjct: 474 YDKDGTFIRKYLPVLKDMPAKYIYEPWTAPADVQKKAGCVIGVDYPPPIVDHAVASKECI 533

Query: 472 NQYYAAKKQ 480
            +   A K 
Sbjct: 534 EKLAVAYKA 542


>gi|97047702|sp|Q4KML2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH;
           Short=zCRY-DASH
          Length = 520

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 133/480 (27%), Positives = 220/480 (45%), Gaps = 31/480 (6%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQS 58
           +A    +  LRNDLR+ DN+  + A  N++  +I ++   P  ++             + 
Sbjct: 2   SASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYCFDPRHYQGTYHYNFPKTGPFRL 60

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  S+  ++  L + G      Q    D   E +        V+ + ++ +    E  
Sbjct: 61  RFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLG---SVSTVAFHEEVASEEKS 117

Query: 119 RDKLLEK-RLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRS 176
            ++ L++   Q++V  ++F  S L     +   H   +  VYT FRKA+        + S
Sbjct: 118 VEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLS 177

Query: 177 LPVPAIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKFCKEKVY-- 228
            P         +    IP F       P       FP   GE  AL  L+ +  +     
Sbjct: 178 TPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDTNAVA 237

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y E R+ +  +  +++ SP+L++G +SPR  + ++K+  V+         +  + EL+W
Sbjct: 238 TYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERT--ANQSTYWVIFELLW 295

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R++++ +   Y +       +   + + WN D  +  AWK+G TG P +DA MR+L   G
Sbjct: 296 RDYFKFVALKYGNRIFYMNGL-QDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRELALTG 354

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND     R
Sbjct: 355 FMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPREN-R 413

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN--YPLPIV 461
            FN   QG  +D  G ++R W+PEL  +    +H P     S L    +SLN  YP PI+
Sbjct: 414 KFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPII 473


>gi|168067358|ref|XP_001785586.1| photolyase-like protein [Physcomitrella patens subsp. patens]
 gi|162662787|gb|EDQ49598.1| photolyase-like protein [Physcomitrella patens subsp. patens]
          Length = 557

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 130/491 (26%), Positives = 216/491 (43%), Gaps = 44/491 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGIS 54
           M +     + +VW RNDLRI+DN+AL  A  +S A V+ +++  P  + Q          
Sbjct: 57  MTSRKGTGIAIVWFRNDLRISDNEALLKAWQSSQA-VVPLYVVDPRLYGQTYHFGFPKTG 115

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             ++ FI  S+  ++ +L Q+G+     Q    D     + S         ++ +++   
Sbjct: 116 ELRAQFIMESVANLRDNLRQRGLDLIVRQGKPED----VVPSIAKSIGAHTVYAHKETCS 171

Query: 115 NEVRRDKLLEKRLQH-------RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
            E   +  +++ L +       ++         L     +     ++  VYT FRK +  
Sbjct: 172 EETTVETGVKRGLANLEGGPKMQIRLDFVWGGTLYHLDDLPFSPSELPDVYTQFRKGVEY 231

Query: 168 NLVQADLRSLPVPAIRLTGPVTP-----SNIPRFFDYPFQAIDP------MFPIGEQNAL 216
           N        +P     L   ++       +IP   +   +  +        F  GE  AL
Sbjct: 232 NCKVRPALKMPTQMGPLPESLSEKIGELGDIPTMAELGLKYREQSPLGVMHFEGGETAAL 291

Query: 217 HILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
             L+ +   K     Y E R+ +     +++ SP+L+ G LSPR   + +K    + +  
Sbjct: 292 ARLQDYFWNKDQLKIYKETRNGMLGANYSTKFSPWLAHGCLSPRTIHDEVKRYETERV-- 349

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
                +  L ELIWR+++R +   Y +               W+++  L +AW++G TG+
Sbjct: 350 ANDSTYWVLFELIWRDYFRFVSIKYGNAIFHLGGPRKVVGKRWSQNRELFEAWREGRTGY 409

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           P+IDA M++L   G+M NR R I  SFLV+DL +DWR+G E+F + LLD D  SN G W 
Sbjct: 410 PLIDANMKELAATGFMSNRGRQIVCSFLVRDLGLDWRMGGEWFETCLLDYDPCSNYGNWT 469

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLS 453
           + A  GND     R F+   Q   +DP+G ++ HWLP L   P +  + P          
Sbjct: 470 YGAGVGNDPRE-DRYFSIPKQSATYDPEGEYVAHWLPSLKQSPPKQRNFP---------G 519

Query: 454 LNYPLPIVDHK 464
             Y  PIV  K
Sbjct: 520 DAYLRPIVPLK 530


>gi|317123324|ref|YP_004097436.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
           DSM 43043]
 gi|315587412|gb|ADU46709.1| deoxyribodipyrimidine photo-lyase type I [Intrasporangium calvum
           DSM 43043]
          Length = 455

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 148/478 (30%), Positives = 220/478 (46%), Gaps = 28/478 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V ++W R DLR++D+ AL AA  +S   V+ VF+  P           +S  +  SL 
Sbjct: 1   MTVSVLWFRRDLRVSDHPALLAAL-DSGTSVLPVFVLDPRLLET---GQPRSRRLITSLR 56

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL         H      + ++ +     +     +   R+       RD  +E  
Sbjct: 57  ALADSLD-------GHLVVRTGNPVDVIPQVAREVGAESVHVTRETTPFGRTRDAAVEVA 109

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ       +        PG ++  +   Y+V+TPF +A   +       + P+      
Sbjct: 110 LQSEGRRLVATGTPYAAGPGLVVTQSGAPYRVFTPFARAWRAHGSP-PPAAPPLRIPWFD 168

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQ 244
           G V    +P                           F  E ++  Y E RD P +  TS+
Sbjct: 169 GDVGGLALPAVAAAGGPGGIAGEAAART----RWLDFLAEGRLGRYAEDRDRPDLDATSR 224

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +S  L  G + PR     +             GA +++ EL WREFY  ++   P     
Sbjct: 225 MSVPLKYGEIHPRTLLADIASH----PDGRTGGAATFVTELAWREFYADVLWHRPESAW- 279

Query: 305 KPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           +   P   ++ ++       L+ AW++G TG+PI+DA MRQL   GWMHNRLRMITASFL
Sbjct: 280 EDLRPDLGRMSYDDGPETDRLVAAWREGRTGYPIVDAGMRQLLGEGWMHNRLRMITASFL 339

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL V W +G  YF+ QLLDGD+ASN+ GWQW A TG D+ PYFR+ NP  Q  RFDP+
Sbjct: 340 TKDLHVWWPVGARYFLDQLLDGDIASNSHGWQWVAGTGTDAAPYFRVLNPLRQAHRFDPE 399

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           G ++R W+PEL ++    +H P  W   N  +  YP  +VDH       L +Y  +++
Sbjct: 400 GDYVRRWVPELGHLAGPAVHEP--WDHPNGYAHGYPGRVVDHDAERREALARYELSRR 455


>gi|307103112|gb|EFN51376.1| hypothetical protein CHLNCDRAFT_7260 [Chlorella variabilis]
          Length = 491

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 132/493 (26%), Positives = 209/493 (42%), Gaps = 24/493 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R  LR+ DN AL AA   +D  +  +FI  P   +   I   +  F+  SL  + 
Sbjct: 1   SIIWFRKGLRLHDNPALLAAAAGAD-HLCPIFILDPWFLKSDKIGVNRIQFLLESLTDLD 59

Query: 70  KSLSQKGIVFQYHQC----SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            S   +G      +     +    +   L     +  VT+L +    E    RRD  + +
Sbjct: 60  ASFRARGSRLLVLRGRSEEAPSCQAAASLPGALQEWGVTRLCFEHDTEPYAKRRDVAVRQ 119

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAIR 183
             +   V   +     L  P  +L        +    F K +      A  R +  P+  
Sbjct: 120 LAEAAGVEVVAPVSHTLYDPQVLLQRNGGRAPLTMQSFTKLVDGGGCAAGYRCIAAPSWP 179

Query: 184 LTGPVTPSNI--PRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVY--YYVEQRDIPA 238
               +  S++  P   D  +       F  GE  AL  +  +  +K +   + + +  PA
Sbjct: 180 QAAALVSSSVAVPSLTDIGYPPTGTTPFKGGESAALARMADYLSDKGWVCAFEKPKGNPA 239

Query: 239 ---IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
                 T+ LSPYL  G LSPR    +L++ + +          S   +L+WREF+    
Sbjct: 240 AFVRPSTTVLSPYLKFGCLSPRLFHAKLQQIYAERNGMHTQPPVSLRGQLLWREFFTLCG 299

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A  P+        P  ++I W  D   + AW+   TG+P IDA M QL   GWMH+  R 
Sbjct: 300 AAIPNFDRM-AGNPICKQIPWVDDPERIAAWEHSRTGYPWIDAIMAQLRQQGWMHHLARH 358

Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
             A FL + DL   W  G+  F   L+D D + N   WQW +++   S  YFR+++P   
Sbjct: 359 SVACFLTRGDLWCSWEAGQAVFDKYLIDADWSLNAANWQWLSASAFFSQ-YFRVYSPIAF 417

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH 468
           GK++D  G +IR +LP L ++P +YI+ P +            +  +YP PIVDH+ A  
Sbjct: 418 GKQYDKNGDYIRRFLPVLKDMPVRYIYEPWTAPLSVQQAAGCVVGKDYPRPIVDHQAAMK 477

Query: 469 HTLNQYYAAKKQS 481
             + +  AA   S
Sbjct: 478 ENMARMKAAYGAS 490


>gi|116075315|ref|ZP_01472575.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
 gi|116067512|gb|EAU73266.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9916]
          Length = 507

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 121/482 (25%), Positives = 199/482 (41%), Gaps = 35/482 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             LVW + DLR  DN+ L  AC +    V+ ++I  PE WRQ   SARQ  F   SL  +
Sbjct: 8   PQLVWFKRDLRTVDNRPLLEACAHG--PVLPLYIVEPEYWRQPDASARQWEFCRESLEHL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127
           ++ L+  G            +++  L+       +  ++ + +        RD+ +    
Sbjct: 66  RRELAALGQPLVVR----CGEAVTVLERARRSLGIAAIWSHEETGNGFTYDRDRAVLAWT 121

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + R I         +P   +     +       + + + + L     + LP+  + L   
Sbjct: 122 RDRGIPWIQ-----IPQFGVTRGLKRREGWARRWEERMAEPLAPEPPKLLPLSDLALGEI 176

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
            T   +    D            G ++ L  L  F   +V  Y      P  A +G S+L
Sbjct: 177 PTAEALQLSPD----PCPLRQRGGRESGLQELSDFLTSRVQRYARSISSPVVAFRGCSRL 232

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G LS R+     +            G  S+ + L W   +   +   P++    
Sbjct: 233 SPYLTWGCLSMREVVQASRTLT-------GRGVSSFGSRLHWHCHFIQKLESEPAIEFH- 284

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P+   I    DS   QAWK+G TG P +DA MR L   GW++ R+R +  SF    L
Sbjct: 285 DFHPFMRGIR-PMDSERFQAWKEGRTGVPFVDACMRALLAHGWINFRMRAMLMSFASYHL 343

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + WR    +   Q +D +   +    Q    +G+ ++   RI+NP  QG+  DP G FI
Sbjct: 344 WLPWRESGLHLARQFVDYEPGIHWSQCQMQ--SGSTAINTIRIYNPVKQGQDHDPNGRFI 401

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R W PEL ++P  Y+H P     +        L ++YP P+VD   A     ++ +  ++
Sbjct: 402 REWCPELASLPNVYLHEPWKLDARRAEQLGCRLGVDYPAPVVDPTAAAREAKDRIWEIRR 461

Query: 480 QS 481
            +
Sbjct: 462 AA 463


>gi|302772993|ref|XP_002969914.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii]
 gi|300162425|gb|EFJ29038.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii]
          Length = 559

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 135/507 (26%), Positives = 236/507 (46%), Gaps = 38/507 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
            + + +LVW R DLR+ D      A  N+   V+ +FI  P +  +         ++  S
Sbjct: 3   NSKACNLVWFRRDLRVED-NPALLAAANAPGVVLPIFIWCPAEEGEFQPGRHSRWWLKQS 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLL 123
           L+ +  SL+  G      + +   D++  L +       T++F N  Y +   V RD+ +
Sbjct: 62  LIHLDASLASYGCSLLLQKGN---DTLSVLVNIARATGSTQIFCNHLYADPITVARDRRV 118

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS------ 176
           ++RL ++ +   +F+   L  P  I +     +  +  F    ++   + D+        
Sbjct: 119 KQRLLEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSSQARL 178

Query: 177 --------LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCK 224
                   L   A  L  P +   +    D   ++ + +    +  G ++A   L+ F  
Sbjct: 179 FPYREYLDLISFAGNLPTPCSIEELC-LEDESEKSSNELLARTWSPGCKHANDALQAFLV 237

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD--LLIKPKSGAFSWL 282
             +  Y   R+  A   TS LSPYL  G LS R+ +N ++ +  D   L  P+  A  +L
Sbjct: 238 GPLNDYTTSRET-ADNSTSHLSPYLHFGELSIRKLYNCIRSKQRDEEQLFCPRRNAHLFL 296

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             +  RE+ R++   +P            +   W  D    +AWK G TG+P++DAAMR+
Sbjct: 297 RAIGLREYSRYISFHFPFTQE----QSLLKNFPWRNDEIHFKAWKLGKTGYPLVDAAMRE 352

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L + GW+H +LR++T+SFL+K L + W  G +YF   LLD DL S+  GW++ +    D 
Sbjct: 353 LWSTGWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCLTDG 412

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNY 456
               R+ +P  +G + DP+G ++R WLPEL+ +P Q+IH P+S           +L  NY
Sbjct: 413 HELDRVLDPHEEGCKLDPKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELGTNY 472

Query: 457 PLPIVDHKKACHHTLNQYYAAKKQSLL 483
           P PIVD + A +       + ++++ +
Sbjct: 473 PKPIVDMEVAKYRLSQAVKSMREKNSV 499


>gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio]
          Length = 579

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 131/496 (26%), Positives = 210/496 (42%), Gaps = 30/496 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFI 61
           A +  ++HL   R  LR+ DN +L  A  +S   +  V++      +    + A +  F+
Sbjct: 21  AMSHRTIHL--FRKGLRLHDNPSLLGALASSST-LYPVYVLDRVFLQGAMHMGALRWRFL 77

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L   G        S        L     Q  +T++ Y+ + E    R DK
Sbjct: 78  LQSLEDLDTRLRAIGSRLFVLCGST----ANILRELVAQWGITQISYDTEVEPYYTRMDK 133

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            ++   Q   +   +     L     I+        +       ++  L + +  +  V 
Sbjct: 134 DIQTVAQENGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVS 193

Query: 181 AIRLTGPVTPSNIPR------FFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVY--YYV 231
                  VTP ++ R        D   Q   + ++P GE +AL  L K  + + +   + 
Sbjct: 194 IEDFQRCVTPVDVDRVYAVPSLADLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFS 253

Query: 232 EQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           + R IP   +  T+ LSPYLS+G LS R  ++RL   +            S   +++WRE
Sbjct: 254 KPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLNSIYAQSK-NHSLPPVSLQGQVLWRE 312

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+  + +  P+    +       +I+W  D   L+ W+   TGFP IDA M QL   GW+
Sbjct: 313 FFYTVASATPNFTKMEG-NSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQEGWI 371

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + DL + W  G + F   LLD D + N G W W +++      Y RI
Sbjct: 372 HHLARHAVACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHK-YTRI 430

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVD 462
           F P   G+R DPQG ++R +LP L N P+QYI+ P    +         +  +YP PIV 
Sbjct: 431 FCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPIVS 490

Query: 463 HKKACHHTLNQYYAAK 478
           H +A    L      +
Sbjct: 491 HIEASQRNLALMRQVR 506


>gi|254462785|ref|ZP_05076201.1| deoxyribodipyrimidine photolyase family protein [Rhodobacterales
           bacterium HTCC2083]
 gi|206679374|gb|EDZ43861.1| deoxyribodipyrimidine photolyase family protein [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 511

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 116/487 (23%), Positives = 194/487 (39%), Gaps = 29/487 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + +  +VW + DLR  D+  L AA   S++ VI ++I  PE W+Q   S R  HFI+  L
Sbjct: 2   SHAPSIVWFKRDLRNHDHAPLLAASQ-SNSPVIPLYIVEPEYWQQAFASRRHWHFIHDCL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124
           + +  +L+  G            D  + L     Q  V  ++ + +        RD  + 
Sbjct: 61  VDLNIALTDLGQPLIVR----VGDVCDVLAQLHEQHGVGDVYMHEETGNSWTYDRDLKVG 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           K    R I      S   P   ++                + +N+       +P    + 
Sbjct: 117 KLCLDRNI-----SSHEFPTNGVVRRLRSRDDWSKIRNVRMAENITAKPNNLVPTLGCQS 171

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GT 242
                  +      +    I  +   G   A+  L+ F   +   Y+     P++     
Sbjct: 172 DSLPEKDDPM----FGNTPIGKVQKGGRTQAVADLQSFLNHRCQKYLHHISAPSLSDVHC 227

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA----FSWLNELIWREFYRHLMAFY 298
           S+LS +L+ G LS R+  + + +    L    K        ++ + L WR  +   +   
Sbjct: 228 SRLSTHLAWGALSVREVVHSVAKRHAQLTPLEKKSYGRNLSAFGSRLAWRCHFVQKIEDQ 287

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +        +    E+  +    QAW  G TG+P +DA MR L   GW+  R+R +  
Sbjct: 288 PEIETHCMHPAFEGLREYEHNEAHYQAWATGNTGYPFVDACMRSLIAEGWITFRMRAMLV 347

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWR+  ++      D +   +    Q    +G   +   R++NP  Q    
Sbjct: 348 SFASYQLWLDWRVSGDHLARLFTDFEPGIHYSQLQMQ--SGVTGINTMRVYNPIKQSLEH 405

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLN 472
           DP G FIR W+PEL NVP ++IH P +W          +L  +YP PIV+H  A +    
Sbjct: 406 DPTGAFIRKWVPELTNVPDEFIHEPWTWEKTLLDQRDFELGQDYPAPIVEHSFAANAAKQ 465

Query: 473 QYYAAKK 479
           +  A +K
Sbjct: 466 KIAAVRK 472


>gi|284033744|ref|YP_003383675.1| deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836]
 gi|283813037|gb|ADB34876.1| Deoxyribodipyrimidine photo-lyase [Kribbella flavida DSM 17836]
          Length = 437

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 148/468 (31%), Positives = 223/468 (47%), Gaps = 34/468 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R DLR+ DN AL  A    D +V  VF+  P  W   G   R++  + +     +
Sbjct: 3   AVMWFRRDLRLADNPALLDAVAAGDGRVAGVFVLDPALWDAAG-DPRRAQLLSSL----R 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
              +         +     D    +     +     +     Y    VRRD+ +E  L  
Sbjct: 58  SLSAAMDGKLVVRRG----DPATVIPELAAELGAASVHVTTDYGPYGVRRDQAVENALSC 113

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            ++         + PG ILN   + Y+V+TP+ +A +++  +               P T
Sbjct: 114 PLVAT--GSPYAVAPGRILNGQGRSYQVFTPYFRAWLEHGWRQPAE----------APAT 161

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
              I    D    A   +   GE  A     ++    V  Y ++R+ P +  TS++S  L
Sbjct: 162 IEWIAARGD-ALPAAGTIEGAGEVAAREHWTQWLAS-VGQYDDERNRPDLDSTSRMSVPL 219

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G + PR           DL   P +GA ++  EL WR+F   L+A YP     KP  P
Sbjct: 220 KYGEIHPRTMLT-------DLARHPGAGADAYRRELAWRDFCADLLARYPQAAW-KPLRP 271

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             E++ +++      AW +G TG+PI+DA MRQL   G++HNR+RM+ ASFLVKDL V W
Sbjct: 272 EFERMVYDEPGDAFTAWCEGRTGYPIVDAGMRQLAASGFVHNRIRMVVASFLVKDLHVHW 331

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + G  +FM++L DGDLASN+  WQW A  G D  PY+R+FNP  QG +FDP G+++R W+
Sbjct: 332 KYGARWFMARLRDGDLASNSLNWQWVAGCGADPSPYYRVFNPITQGLKFDPDGSYVRRWV 391

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           PEL ++P + +H P               PIVDH +A   +L +Y A 
Sbjct: 392 PELADLPGKSVHEPWKLAAPPAGYP---APIVDHAEARLESLRRYDAI 436


>gi|120403248|ref|YP_953077.1| deoxyribodipyrimidine photo-lyase [Mycobacterium vanbaalenii PYR-1]
 gi|119956066|gb|ABM13071.1| deoxyribodipyrimidine photo-lyase type I [Mycobacterium vanbaalenii
           PYR-1]
          Length = 442

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 146/449 (32%), Positives = 217/449 (48%), Gaps = 31/449 (6%)

Query: 32  NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91
             D +V+A ++  P    +     R+  ++Y +L  ++ +L  + +V   H        +
Sbjct: 21  EGDGEVLACYVLDPRL--KSSSGPRRLQYLYDALRDLRDNLDGRLLVTHGHP-------V 71

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151
           + +         T +  +  +     RRD  +   L   V   +     L+ PG +    
Sbjct: 72  QRIPLLAKAVGATSVHVSEDFTPFGRRRDDQVRDALG-GVELVATGSPYLVSPGRVTKAD 130

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG 211
              YKV+TPF  A   +  +    S P  A R   P   +  P   D P   +    P G
Sbjct: 131 GTPYKVFTPFFAAWRTHGWRPPAGSGPASA-RWIDPDDVTGGPAAADIPDTGLQLELPAG 189

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
           E  AL    +F ++ +  Y E R+ P +  TS++S +L  G + PR              
Sbjct: 190 ETAALRAWTRFTRDGLADYDEDRNRPDLAATSRMSAHLKFGAIHPRTM---------AAD 240

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQ 328
           +    GA ++L EL +R+FY  ++A +P       +    + IE + D        AWKQ
Sbjct: 241 LGRGEGAQAYLRELAFRDFYASVLAEWPDSAWWN-WNTAFDAIEVDDDGDAQKSFAAWKQ 299

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TGFPI+DA MRQL   G+MHNR+RMITASFLVKDL + W+ G  +F+ QL+DGD+A+N
Sbjct: 300 GRTGFPIVDAGMRQLAETGFMHNRVRMITASFLVKDLHLPWQWGARWFLEQLVDGDIANN 359

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
             GWQWAA  G D+ PYFR+FNP+ QGK+FDP G ++R W+PEL +V   +         
Sbjct: 360 QHGWQWAAGCGTDAAPYFRVFNPSTQGKKFDPSGDYVRRWVPELADVDDVH-------KL 412

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
             D    YP PIVDH +     L +Y A 
Sbjct: 413 DGDRPDGYPEPIVDHGQERAEALRRYRAI 441


>gi|256790273|ref|ZP_05528704.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
 gi|289774148|ref|ZP_06533526.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
 gi|289704347|gb|EFD71776.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
          Length = 457

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 133/477 (27%), Positives = 227/477 (47%), Gaps = 24/477 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L+AA   +D +V+ +F+           +  +  F+   L 
Sbjct: 1   MTVAVVLFTSDLRLHDHPPLHAALQAAD-EVVPLFVRDTGIHAAGFDAPNRRAFLADCLS 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL  +G              +  + S   Q   T++           RR++ L + 
Sbjct: 60  DLDSSLRHRGGRLVVRDGPV----VREVRSVAAQCGSTEVHVAAGVTGYAHRREERLREG 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+   +     + V+  + PG++         V+TP+ +   +   +  L +     +R+
Sbjct: 116 LRDDGVSLHVHEPVITAVAPGAVTPAGSDHVAVFTPYFRRWSRESPRKPLAAP--RTVRV 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              V    +P   D    A   +   GE        ++ +  +  Y ++ D  A   TS+
Sbjct: 174 PRGVRGEPLPDRADV-AGASPGLPAGGETAGRDRFARWSRSGLSRYEDRHDDLADDATSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LSP +  +R +            GA +++ ++ WR+F+  ++A  P   + 
Sbjct: 233 LSPYLHFGALSPLELVHRARAH-------GGPGAEAFVRQVCWRDFHHQVLAARPEASV- 284

Query: 305 KPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           K +    ++    +D+   + AW+ G TG+P++DAAMRQL   GWMHNR R++ A FL K
Sbjct: 285 KDYRTRHDRWRGEEDAAEDIAAWRDGRTGYPVVDAAMRQLRHQGWMHNRARLLVAGFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L VDWRIG  +F+  L+DGD+ +N   WQWAA TG D+ P+ R+ NP +Q +RFDP G 
Sbjct: 345 TLYVDWRIGARHFLDLLVDGDVVNNQLNWQWAAGTGTDTRPH-RVLNPLVQARRFDPDGV 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           ++R W+PEL +V    +H P          L+YP P+V+        L ++  A+ +
Sbjct: 404 YVRRWVPELRSVEGGKVHEPWRLAAAERGELDYPDPLVELADG----LARFKHARGR 456


>gi|302548942|ref|ZP_07301284.1| deoxyribodipyrimidine photolyase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302466560|gb|EFL29653.1| deoxyribodipyrimidine photolyase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 458

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 141/478 (29%), Positives = 221/478 (46%), Gaps = 30/478 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M V +V   +DLR+ D+  L AA  ++   V+ +F+           +  +  F+   L 
Sbjct: 1   MHVSVVLFTSDLRLRDHPPLRAALDSAGT-VVPLFVRDRAVTEAGFAAPNRGAFLADCLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++G            D +E +     +    ++     +     RR+  L + 
Sbjct: 60  DLDSSLRERGGRLVV----CSGDLVEEVCRVVTEADADEVHMAAAHSRFATRREDALRRA 115

Query: 127 LQHRVICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQ---NLVQADLRSLPVPA 181
           L+         D+V +  PPG +       + V+TP+ +   Q     V A  R +PVP 
Sbjct: 116 LEADGRRLFVHDAVTVAVPPGEVTPSGSDHFAVFTPYHRQWAQARLRDVVAAPRRVPVPE 175

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                P+   +           I P  P  GE      +  + +  +  Y + RD  A  
Sbjct: 176 HVKGEPLPARD-------DVPGISPALPAGGESEGRKRVTAYWRRGLGAYDDTRDDLAAD 228

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TS+LS +L  G LSP +  +R +            GA + + +L WR+F+R ++A  P 
Sbjct: 229 STSRLSAHLHFGTLSPVELIHRARRH-------GGPGAEALVRQLAWRDFHRQVLAARPD 281

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                                 ++AW+QG TG+P+IDAAMRQL   GWMHNR R++TASF
Sbjct: 282 AAHTDYRTQRDRWRTERTAGDDIEAWRQGRTGYPVIDAAMRQLRHEGWMHNRARLLTASF 341

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K L VDWRIG  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP  Q KR+DP
Sbjct: 342 LTKTLYVDWRIGAAHFLHWLVDGDVANNQLNWQWMAGTGTDTRP-NRVLNPVTQAKRYDP 400

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            GT++R W+PEL  +    +H P      +  +L+YP P+V   +     L+++  A+
Sbjct: 401 DGTYVRRWVPELAGLDAPAVHEPWKLPGLDRAALDYPDPVVPLSEG----LDRFRRAR 454


>gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio]
 gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio]
          Length = 520

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 132/480 (27%), Positives = 219/480 (45%), Gaps = 31/480 (6%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQS 58
           +A    +  LRNDLR+ DN+  + A  N++  +I ++   P  ++             + 
Sbjct: 2   SASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYCFDPRHYQGTYHYNFPKTGPFRL 60

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  S+  ++  L + G      Q    D   E +        V+ + ++ +    E  
Sbjct: 61  RFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLG---SVSTVAFHEEVASEEKS 117

Query: 119 RDKLLEK-RLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRS 176
            ++ L++   Q++V  ++F  S L     +   H   +  VYT FRKA+        + S
Sbjct: 118 VEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLS 177

Query: 177 LPVPAIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKFCKEKVY-- 228
            P         +    IP F       P       FP   GE  AL  L+ +  +     
Sbjct: 178 TPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDTNAVA 237

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y E R+ +  +  +++ SP+L++G +SPR  + ++K+  V+         +  + EL+W
Sbjct: 238 TYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERT--ANQSTYWVIFELLW 295

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R++++ +   Y +       +   + + W  D  +  AWK+G TG P +DA MR+L   G
Sbjct: 296 RDYFKFVALKYGNRIFYMNGL-QDKHVPWKTDMKMFDAWKEGRTGVPFVDANMRELALTG 354

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND     R
Sbjct: 355 FMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPREN-R 413

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN--YPLPIV 461
            FN   QG  +D  G ++R W+PEL  +    +H P     S L    +SLN  YP PI+
Sbjct: 414 KFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPII 473


>gi|83814331|ref|YP_445305.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
 gi|83755725|gb|ABC43838.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
          Length = 483

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 133/485 (27%), Positives = 213/485 (43%), Gaps = 33/485 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIY 62
           S  LVW+RNDLR+ D+  L  A  + D +VI V+   P  +         +S+ ++ F+ 
Sbjct: 3   STALVWIRNDLRVRDHAPLRYAADHYD-QVIPVYCFDPRHFGTTMFDLPKMSSIRARFLR 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  ++ S+   G           D     L     Q    ++   ++    E   +  
Sbjct: 62  ESVQDLRDSVQDLGADLVVRGGRPED----ILPELVRQTGANEVLQFQEIGGEEEDVETA 117

Query: 123 LEKRLQHRVICKSF-DDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           +E  L+       F     L     +  +    + KVYT FRKA+ +          P  
Sbjct: 118 VEDALRDTGATPGFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDS 177

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-------FPIGEQNALHILRKFCK--EKVYYYV 231
            + L   + P +IP   +  F     +       F  GE      + ++    + +  Y 
Sbjct: 178 LLPLPEDLNPGSIPTLDELGFDDDGTVDERGVLPFRGGESRGHDRIDEYIWRGDFLKKYK 237

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             R+ +     +++ S +L+ G ++PRQ    + E + D  +  KS  +    ELIWR+F
Sbjct: 238 ATRNGLLGANYSAKFSAWLAHGCITPRQIHEEV-ERYEDQRVDNKS-TYWMKFELIWRDF 295

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           + ++             I   + I+W       + W  G TG P +DA MR+LN  G+M 
Sbjct: 296 FSYVTWKAGERLFRPGGINGND-IDWRYYDKSFERWAAGTTGIPFVDANMRELNRTGYMS 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   AS L + L +DWR+G  YF S+L+D D+ASN G W + +  GND  P  R FN
Sbjct: 355 NRGRQNVASMLSQSLKLDWRMGAAYFESRLVDYDVASNWGNWAYNSRVGND--PRARYFN 412

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
              Q KR+D  G ++R+WLPEL +VP +Y+H P+    +        L  +YP P+VD  
Sbjct: 413 IVKQAKRYDENGEYVRYWLPELADVPDKYVHEPNRMSHEQQKKYGCVLGADYPKPVVDLD 472

Query: 465 KACHH 469
           K    
Sbjct: 473 KTYQR 477


>gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio]
          Length = 558

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 130/494 (26%), Positives = 209/494 (42%), Gaps = 30/494 (6%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYA 63
           +  ++HL   R  LR+ DN +L  A  +S   +  V++      +    + A +  F+  
Sbjct: 2   SHRTIHL--FRKGLRLHDNPSLLGALASSST-LYPVYVLDRVFLQGAMHMGALRWRFLLQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +   L   G        S        L     Q  +T++ Y+ + E    R DK +
Sbjct: 59  SLEDLDTRLRAIGSRLFVLCGST----ANILRELVAQWGITQISYDTEVEPYYTRMDKDI 114

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +   Q   +   +     L     I+        +       ++  L + +  +  V   
Sbjct: 115 QTVAQENGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIE 174

Query: 183 RLTGPVTPSNIPR------FFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
                VTP ++ R        D   Q   + ++P GE +AL  L K  + + +   + + 
Sbjct: 175 DFQRCVTPVDVDRVYAVPSLADLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKP 234

Query: 234 RDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           R IP   +  T+ LSPYLS+G LS R  ++RL   +            S   +++WREF+
Sbjct: 235 RTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLNSIYAQSK-NHSLPPVSLQGQVLWREFF 293

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             + +  P+    +       +I+W  D   L+ W+   TGFP IDA M QL   GW+H+
Sbjct: 294 YTVASATPNFTKMEG-NSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLRQEGWIHH 352

Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
             R   A FL + DL + W  G + F   LLD D + N G W W +++      Y RIF 
Sbjct: 353 LARHAVACFLTRGDLWITWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHK-YTRIFC 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHK 464
           P   G+R DPQG ++R +LP L N P+QYI+ P    +         +  +YP PIV H 
Sbjct: 412 PVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPIVSHI 471

Query: 465 KACHHTLNQYYAAK 478
           +A    L      +
Sbjct: 472 EASQRNLALMRQVR 485


>gi|254577919|ref|XP_002494946.1| ZYRO0A13530p [Zygosaccharomyces rouxii]
 gi|238937835|emb|CAR26013.1| ZYRO0A13530p [Zygosaccharomyces rouxii]
          Length = 582

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 158/498 (31%), Positives = 240/498 (48%), Gaps = 32/498 (6%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQS 58
           KA       + W R DLRI+DN AL  A        +++++VF      W  H  S  + 
Sbjct: 88  KADVEAKTVIHWFREDLRISDNTALCKAIEKQQTDKSQLVSVFTINKHDWIAHLDSNFRL 147

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK---LFY 108
            F+Y +L  + K+L +  I     +        SN      W    CL+    K   L  
Sbjct: 148 TFLYNALKSLHKALLELSIPLYVIEFNPEEPTLSNSTTFAHWFKDQCLRLSKGKPLFLTA 207

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN 168
           N +Y  +E+ RD  +      R     F D+ ++ P          Y V++P+ K    +
Sbjct: 208 NAEYPTDELYRDIKIFGTTDERFQFNVFHDTCIVEPCIFKTQQNIQYSVFSPWYKKWCAH 267

Query: 169 LVQADL-----RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
           L+          +  V  I+        ++       F A   +    E+ A+  LRK+ 
Sbjct: 268 LMDKKPNDSLVATSQVKKIQYNEKAFLPDLDFQLPAEFTAQGNVAEASEEAAISRLRKYL 327

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-----EEFVDLLIKPKSGA 278
           ++ +  Y E +DI   + +S +S YLS+GV+S R   N        ++ V    K     
Sbjct: 328 EDGIDKYPE-KDILIHESSSHMSAYLSVGVISARTVVNEAFHLVPGDKLVGKSPKDMIPM 386

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
             ++ E+ WR+FY+H M+F+P + M  PF   +E ++W  +    + W  G TG P+IDA
Sbjct: 387 EEFIREVAWRDFYKHTMSFWPYLSMDLPFNLASENMKWINEEPNFEKWCYGKTGVPVIDA 446

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            MR+L   G+++NR RMITASFL K+LL+DWR GE +F ++L+D DLASN GGW + +ST
Sbjct: 447 IMRKLLLEGYINNRARMITASFLSKNLLIDWRWGERWFRNRLIDCDLASNVGGWGFLSST 506

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           G D+ PYFR+FN   Q + FDP G FI+ W+PEL +      H  HS + K     +YP 
Sbjct: 507 GVDAQPYFRVFNMERQSQAFDPDGEFIKRWVPELKD-----AHNVHSLVQKA---KSYPE 558

Query: 459 PIVDHKKACHHTLNQYYA 476
            IVD K +    L+ Y  
Sbjct: 559 AIVDLKGSRQRALDTYSQ 576


>gi|239983112|ref|ZP_04705636.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074]
 gi|291454944|ref|ZP_06594334.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074]
 gi|291357893|gb|EFE84795.1| deoxyribodipyrimidine photolyase [Streptomyces albus J1074]
          Length = 457

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 134/477 (28%), Positives = 229/477 (48%), Gaps = 24/477 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D  AL AA   +DA V+ +F+           +  ++ F+   L 
Sbjct: 1   MTVSIVLFTSDLRLHDQPALRAALDATDA-VVPLFVRDDAVAEAGFAAPNRAAFLADCLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++G            D +E +     +    ++           RR++ L + 
Sbjct: 60  DLDHSLRERGGRLVIRSG----DLVEEVCRVVTEADADEVHLAEGVSAFARRREERLREA 115

Query: 127 LQHRV--ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+     +      +  LPPG++   +   + V+TP+ +   +  ++  L +     +R+
Sbjct: 116 LESEGRRLFVHEGVTTALPPGAVTPASSDHFAVFTPYFRKWSEQHLRHPLGAP--RTVRV 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              +    +P   D        +   GE      L  + +     Y +Q D  A   TS+
Sbjct: 174 PDGIGSEKVPARGDV-RGVSAGLAAGGESEGRDRLTAWLRRDAGAYEDQHDDLAGDATSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G LS  +  +R +        K  +GA +++ +L WR+F+  ++A  P     
Sbjct: 233 LSPHLHFGTLSAAELVHRARR-------KEGAGATAFVRQLCWRDFHHQVLAARPD-ASH 284

Query: 305 KPFIPWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             +    +     +D     +AW++G TG+PI+DAAMRQL   GWMHNR R++ ASFL K
Sbjct: 285 ADYRAREDHWRTGRDAEQETEAWREGRTGYPIVDAAMRQLAHEGWMHNRGRLLAASFLSK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L VDWR G ++F+S L+DGD+A+N   WQW A TG D+ P+ R+ NP  Q  R+DP G 
Sbjct: 345 TLYVDWRTGADHFLSLLVDGDIANNQMNWQWVAGTGTDTRPH-RVLNPVRQAHRYDPDGA 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           ++R W+PEL  V  + +H P +    +   ++YP P+V   +     L+++  A+ +
Sbjct: 404 YVRRWVPELAGVEGKAVHEPWTLEGFDRAGIDYPEPVVGLSEG----LDRFRRARGR 456


>gi|206891163|ref|YP_002248985.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743101|gb|ACI22158.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 437

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 149/456 (32%), Positives = 217/456 (47%), Gaps = 35/456 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W + DLRI DN+AL+ AC NS  +VI VFI  P    +     R++ F+  SL  + K
Sbjct: 6   IFWFKRDLRIDDNRALFEACQNS-FEVIPVFIFIPSILERFKSYDRRTGFLIESLKHLSK 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQH 129
            + +KG           D+      +   +  +  +F NR +  +    ++ ++K  L  
Sbjct: 65  EIEKKGGRLYCFH----DEPQRVFLTLIRKYGIQAIFTNRAFSWSGEEVEETVKKLCLNE 120

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            V   +F+D+ L     I        K+Y+ F +   QNL   ++ S   P    T  + 
Sbjct: 121 GVDFVTFNDNFLAEIDKIPYR-----KIYSKFYRYWEQNLRLTEVSS---PERINTPKLN 172

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
              I           + ++       +  L++F       Y E RD   I GTS+LSPY+
Sbjct: 173 EPEIDIVASEISHEKNIVWKP--DFGIRRLKEF---DFNRYEELRDRLDIDGTSKLSPYI 227

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G++S R+ +    E               ++ EL WREF+ H+   +P       F  
Sbjct: 228 RFGLISLRKIYRVASEAAGQD--------CQFIKELAWREFWYHIKLNFPQF-KNLEFQE 278

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
              KI W  D  L +A+ +  TG+P+IDAA+ QL    WMHNR RMI ASFL KDL++DW
Sbjct: 279 KRRKIRWQNDEKLYKAFIEAKTGYPLIDAAIIQLKQENWMHNRARMIVASFLTKDLMIDW 338

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE +FM  L+D D   N G WQW AS G D  P  RIFNP IQ K+FDP   FI+ +L
Sbjct: 339 RWGESFFMEHLIDYDEVVNVGNWQWNASVGPDPKP-LRIFNPIIQAKKFDPDCKFIKKYL 397

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           P L  +P+  +H P +        L Y  PIV+H +
Sbjct: 398 PSLKKLPSFMLHDPLTH------RLPYHKPIVNHFE 427


>gi|256374682|ref|YP_003098342.1| deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827]
 gi|255918985|gb|ACU34496.1| Deoxyribodipyrimidine photo-lyase [Actinosynnema mirum DSM 43827]
          Length = 421

 Score =  332 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 143/471 (30%), Positives = 222/471 (47%), Gaps = 52/471 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLR+ D+ AL     +   + +A+F+  P+  R       ++ F++  L  
Sbjct: 3   SSTVVWFRRDLRVEDHPALLE-AADRADRALALFVLDPKLLR--PSGKPRTDFLHRCLKS 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L  + +V +        D +E + +   +     +  +        RRD+ +    
Sbjct: 60  LDDRLGGRLMVVE-------GDPVEVVPAVAREIGAETVHVSADTGPYGRRRDEAV---- 108

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V          + PG +       Y+V+TPF +A   +  +    +           
Sbjct: 109 GEEVELVEAGSPYAVKPGRVRKADGTPYRVFTPFYRAWADHGWRRPADT----DASTVDW 164

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P    R        +  ++            +F  E++  Y   RDIP + GTS+ S 
Sbjct: 165 IKPPRSTRPRAKALPDVAELW-----------ERFRDERLPDYHRTRDIPGVDGTSRFSA 213

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  GV+ PR   + L +           G+  + +EL WREFY  ++  +P+       
Sbjct: 214 FLRWGVVHPRTLLDDLGQ---------DEGSKVFRSELAWREFYADVLWHHPASARHN-L 263

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               ++IE ++D     AW+QG TG+PI+DA MRQL   GWMHNR+RMITASFLVKDL +
Sbjct: 264 DRRFDRIELDEDRDHFDAWRQGRTGYPIVDAGMRQLLEEGWMHNRVRMITASFLVKDLHL 323

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W  G  +FM  L+DGDLASN   WQWAA +G D+ PYFR+FNP  QG++FDP+G +IR 
Sbjct: 324 PWWWGARHFMEHLVDGDLASNQHNWQWAAGSGTDAAPYFRVFNPITQGQKFDPKGDYIRR 383

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++PEL +V  + +H P               PIVDH       L+++ A K
Sbjct: 384 YVPELRDVAGKAVHQPR-------------DPIVDHAHERQVALDRFAAIK 421


>gi|29827753|ref|NP_822387.1| deoxyribodipyrimidine photolyase [Streptomyces avermitilis MA-4680]
 gi|29604854|dbj|BAC68922.1| putative deoxyribodipyrimidine photolyase [Streptomyces avermitilis
           MA-4680]
          Length = 457

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 127/476 (26%), Positives = 219/476 (46%), Gaps = 22/476 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L AA  +   +V+ +F+           +  +  F+   L 
Sbjct: 1   MNVSVVLFTSDLRLHDHPPLRAAL-DGARQVVPLFVRDRAVDGAGFAAPNRLAFLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G            D ++ +     +    ++           RR++ L   
Sbjct: 60  DLDAGLRERGGRLVLRSG----DVVDQVCKVAAEADADEVHLAAGVSAYAHRREQRLRSA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+         ++V+  + PG++   +   + V+TP+ +   +  ++  L +     +R+
Sbjct: 116 LEADGRRLHVHETVITAVAPGAVTPSSSDHFAVFTPYFRHWEREHLRDALGAP--RGVRV 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              V    +P   +        +   GE+     L  + +  +  Y ++ D  A   TS 
Sbjct: 174 PESVGSERLPTRTELS-GLSQGLAAGGEEEGRKRLMAWLRGGITAYEDRHDDLAGDATSH 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G LSP +  +R +            GA +++ +L WR+F+  ++A  P     
Sbjct: 233 LSPHLHFGTLSPVELVHRARRT-------GGPGAEAFVRQLAWRDFHYQVLAARPDAATA 285

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                             ++AW+ G TG+P+IDAAMRQL   GWMHNR R++TASFL K 
Sbjct: 286 DYRGRGDRWRSEAAAREEVEAWRTGRTGYPVIDAAMRQLRHEGWMHNRGRLLTASFLTKT 345

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  R+ NP  Q KR+DP G +
Sbjct: 346 LYVDWRVGARHFLELLVDGDVANNQLNWQWMAGTGTDTRP-NRVLNPVTQAKRYDPDGAY 404

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +R W+PEL  +    +H P      +  + +YP PIV+        L ++  A+ +
Sbjct: 405 VRRWVPELEGLRGAAVHEPWKLKGLDRAAYDYPDPIVELADG----LARFRHARGR 456


>gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
 gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
          Length = 546

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 134/523 (25%), Positives = 210/523 (40%), Gaps = 55/523 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-------- 52
           M   +     L+W R  LR+ DN AL  A   S+  +  VF+  P               
Sbjct: 1   MATRSG---SLIWFRKGLRVHDNPALEFASKGSE-FMFPVFVIDPHYMESDPSAFSPGSS 56

Query: 53  -ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
                +  F+  SL  +  SL + G      +        E L     + +V +L +   
Sbjct: 57  RAGVNRIRFLLESLKDLDSSLKKLGSRLLVLKGEPG----EVLFRCLQEWKVKRLCFEYD 112

Query: 112 YEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPF-----RKA 164
            +      D  ++       V   S     L  P  ++  +  +    Y  F       +
Sbjct: 113 TDPYYKALDVKVKDYASSTGVEVFSPVSHTLFNPADVIEKNGGKPPLSYQSFLKIAGEPS 172

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-----FPIGEQNALHIL 219
             ++ +     SLP   +   G +  S +P   +  ++  D       F  GE  AL  L
Sbjct: 173 CAKSELVMSYSSLP--PVGDVGNLGISEVPSLEELGYRDDDEQADWTPFRGGESEALKRL 230

Query: 220 RKFCKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
            K   +K +   + + +  P+      T+ +SPYL  G LS R  +  L+  + D+  K 
Sbjct: 231 TKSISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK-KH 289

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            S   S L +L+WREF+       P+    K      ++I WN+D  +L AW+ G TG+P
Sbjct: 290 TSPPVSLLGQLLWREFFYTTAFGTPNFDKMKGNR-ICKQIPWNEDHAMLAAWRDGKTGYP 348

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
            IDA M QL   GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W 
Sbjct: 349 WIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWM 408

Query: 394 WAASTGNDSVPYFRIF-------NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           W + +          F          +   ++DP G +IRH+LP L ++P QYI+ P + 
Sbjct: 409 WLSCSSFFYQAIKATFVMLTLVSQCIVMVSKYDPDGKYIRHFLPVLKDMPKQYIYEPWTA 468

Query: 447 L------DKNDLSLNYPLPIVDHKKA---CHHTLNQYYAAKKQ 480
                      +  +YP P+V H  A   C   + + YA  K+
Sbjct: 469 PLSVQTKANCIVGKDYPKPMVLHDSASKECKRKMGEAYALNKK 511


>gi|328887006|emb|CCA60245.1| Deoxyribodipyrimidine photolyase [Streptomyces venezuelae ATCC
           10712]
          Length = 457

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 139/481 (28%), Positives = 224/481 (46%), Gaps = 32/481 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L AA    + +V+ +F+  P   R    +  +  F+   L 
Sbjct: 1   MNVSVVLFTSDLRVHDHPPLRAALGRGN-EVVPLFVRDPAVARAGHAAPNRDAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L ++G            D +  + +   +    ++           RR+  L + 
Sbjct: 60  ALDSALRERGGRLVVRSG----DPVAEVCAVVREADADEVHMAAGCSGFARRREDRLRRA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+         D+V+  LP G++       Y V+TP+ +   +  ++  L +  V     
Sbjct: 116 LEADGRRLYVHDAVVTALPTGAVTPGGSDHYAVFTPYFRRWSRERLREPLAAPRV----- 170

Query: 185 TGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              V      R  D P +A        +   GEQ     L  +  E V  Y E+ D  A 
Sbjct: 171 ---VRTPRGIRSEDLPARANVQSVSGGLAAGGEQEGRKRLAAWLAEDVDTYEERHDDLAG 227

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LSPYL  G +S  +  +R +        +  +GA +++ +L WR+F+  ++A  P
Sbjct: 228 DATSRLSPYLHFGAVSAAEAVHRAR-------SRGGAGAEAFVRQLCWRDFHHQVLAARP 280

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                             +    L+AW++G TG+P++DAAMRQL   GWMHNR R++TAS
Sbjct: 281 DAASDDYRTRHDRWRRGTEAEADLRAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLTAS 340

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL K L +DWR G  +F+  L+DGDLA+N   WQW A TG DS P  R+ NP  Q KR+D
Sbjct: 341 FLTKTLYIDWREGARHFLELLVDGDLANNQLNWQWMAGTGTDSRP-NRVLNPVTQAKRYD 399

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P+G ++R W+PEL  +    +H P     +     +YP P+V+        L ++  A+ 
Sbjct: 400 PEGAYVRRWVPELAGLEGPAVHEPWKLPGRERARYDYPDPMVELADG----LARFRRARG 455

Query: 480 Q 480
           Q
Sbjct: 456 Q 456


>gi|257388282|ref|YP_003178055.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
 gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
          Length = 483

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 119/490 (24%), Positives = 204/490 (41%), Gaps = 36/490 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61
           MS  LVW R DLR  DN  L  A   +D  V+ ++           +    +   ++ F+
Sbjct: 1   MSTVLVWFRRDLRCHDNATLRRAVAEADT-VVPLYCLPDRLTGEGMFGLDRVGPHRAQFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +++SL  +                E  + +        +++       E     
Sbjct: 60  IESLADLRESLRDRDGELYVRSGDPGTVVPEAAEEF----DADAVYWQALPGPEERDEAG 115

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV- 179
            +   L    I  ++F    L     +     ++   +TP++            +  P  
Sbjct: 116 SVRAGLADAGIDSETFWTHTLYHRDDLPRPPDEIEDTFTPWKDRTEAKATVRPPKPAPEW 175

Query: 180 ---PAIRLTGPVTPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKV- 227
              P           ++P   D+ F   +          +  GE   L  +  +  E+  
Sbjct: 176 VHAPNGGRRASSGADDLPTLADFGFGEDEATVDDRGVLDWTGGETAGLDRVATYVWERDC 235

Query: 228 -YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              Y E R+ +     +S+ SP+LS G LSPRQ    +++   D +       +  + EL
Sbjct: 236 LREYRETRNGLVGADYSSKFSPWLSFGCLSPRQIHREVEQYETDRV--ENDSTYWLVFEL 293

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR+F+++ +A Y +       I   + I W +D    + W +G TG P +DA MR+LN 
Sbjct: 294 TWRDFFQYQLAKYGAKWFQPGGIRDRDDIRWRRDRAQFERWARGETGIPFVDANMRELNA 353

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G++ NR R   ASFL  +L +DWR+G  YF S+L+D D+ASN   W + +  GNDS   
Sbjct: 354 TGYVSNRGRQNVASFLSNNLRIDWRLGAAYFESRLVDYDVASNWCNWAYQSQVGNDSR-- 411

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLP 459
              F    Q   +DP+G ++  W PEL+ +P +Y+H P +  +        +L  +YP P
Sbjct: 412 DSYFEIVGQATHYDPEGAYVTRWCPELSALPPEYVHEPWTMSEHEQADYGVELGTDYPAP 471

Query: 460 IVDHKKACHH 469
           ++D + +   
Sbjct: 472 MIDLEASYEK 481


>gi|88811682|ref|ZP_01126936.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
           photoreceptor) [Nitrococcus mobilis Nb-231]
 gi|88791073|gb|EAR22186.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
           photoreceptor) [Nitrococcus mobilis Nb-231]
          Length = 479

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 135/480 (28%), Positives = 219/480 (45%), Gaps = 27/480 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L W R DLR+ D+  L  AC  +   VI VFI  P   +   + A     +  ++  
Sbjct: 5   TPVLFWFRRDLRLADHPGLV-ACQAARVPVIPVFILDP---QTEALGAAAKWRLGLAIAS 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            ++ L   G      +    +           +    ++ ++R Y  + + RD+ ++  L
Sbjct: 61  FRERLQAIGSDLILRRGPAKETL----LELLEETGACEVHWSRNYTPDAIERDQEVKTAL 116

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN---LVQADLRSLPVPAIR 183
           +       S     L+ P ++   A   ++VY+P+ +A        V  ++ +LP PA+ 
Sbjct: 117 KRAGRHALSHPGHTLIEPWAVSPAASDHFRVYSPYWRAFRTIEIAPVVPEIEALPAPALW 176

Query: 184 L-TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             +  +    +    +   + +     +GEQ AL     F  E    Y   RD   +  T
Sbjct: 177 PRSDNLAGWRLDAAMNRGAEVVARYACVGEQAALERFAAFLDEPWSAYRNGRDRLDLAAT 236

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS  L+ G +SPR  W+ +     D     + G  ++L EL+WREF  HL+   P + 
Sbjct: 237 SLLSENLTYGEISPRTIWHGVCASGGDQ----EQGGETFLKELVWREFSYHLLYHTPHIT 292

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + +        W  D+     W++G TG P+IDAAMRQ+   G MHNR RM+ AS+L 
Sbjct: 293 -QRNWRAEWNAFPWRGDNEQAARWRKGLTGEPVIDAAMRQMYVTGTMHNRARMLVASYLT 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L+  W+IG ++F   L+D D A+N  GWQW A +G D+ P+FR+FNP  Q ++FDP  
Sbjct: 352 KHLMTHWKIGMDWFAQCLIDWDPAANALGWQWVAGSGPDAAPFFRVFNPATQAEKFDPDA 411

Query: 423 TFIRHWLPELN-NVPTQYIHA-----PHSWLDKNDLSLNYPL-PIVDHKKACHHTLNQYY 475
            + R ++ EL  + P +   A     P  W    D    YP  P+++ K+     L  Y 
Sbjct: 412 VYRRRYVAELAGDNPGEAALAYFDACPRHW--SLDPEQKYPEAPLIELKRGRERALEAYQ 469


>gi|194673414|ref|XP_585942.4| PREDICTED: cryptochrome 2-like [Bos taurus]
 gi|297483449|ref|XP_002693610.1| PREDICTED: cryptochrome 2-like [Bos taurus]
 gi|296479702|gb|DAA21817.1| cryptochrome 2-like [Bos taurus]
          Length = 585

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 122/494 (24%), Positives = 200/494 (40%), Gaps = 36/494 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA   +   V  V+I  P       +   +   +     +  
Sbjct: 21  SVHWFRKGLRLHDNPALLAAVRGAHC-VRCVYILDPWFAASSSVGINRWRMMK---NEAT 76

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL  + +  Q+ + ++            ++  VT+L +    E     RD  + K  + 
Sbjct: 77  QSLL-RVLTLQWRKLASGGQLP-----CHMEWGVTRLTFEYDSEPFGKERDTAIMKMAKE 130

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   + +   L     I+    Q   +     +A+I  +         V + ++ G  
Sbjct: 131 AGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEGCR 190

Query: 189 TPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     Y   +++ +           +  GE  AL  L K  + K +    +R   
Sbjct: 191 AEIQESHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRM 250

Query: 238 AIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+  
Sbjct: 251 NANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYT 309

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  
Sbjct: 310 AATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLA 368

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL V W  G   F   LLD D + N G W W  S       +F  + P 
Sbjct: 369 RHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPV 427

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKA 466
             G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +A
Sbjct: 428 GFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESIQKAAKCVIGVDYPRPIVNHAEA 487

Query: 467 CHHTLNQYYAAKKQ 480
               + +     +Q
Sbjct: 488 SRLNIERMKQVYQQ 501


>gi|126727582|ref|ZP_01743415.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2150]
 gi|126703172|gb|EBA02272.1| Deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2150]
          Length = 511

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 115/486 (23%), Positives = 198/486 (40%), Gaps = 37/486 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLR+ D+  L AA H  +  +I ++I  PE W+Q  ++ R  HF +  L+ + K
Sbjct: 7   IVWFKRDLRVQDHAPLLAASHT-NRPIIPLYIIEPECWQQPDVARRHWHFTHDCLVDLNK 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRLQH 129
            L+  G             +++ +     +     LF + +        RD  +      
Sbjct: 66  DLTDLGQPLII----AVGVAVDVIAQLQKKFGAVDLFAHEETGNAWTYDRDVAVAGLCSD 121

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +    +  + ++         L+   V++  R   + + +      L       + P+
Sbjct: 122 LEIPFHEYPSNGVV-------RRLKSRDVWSRIRNERMADRISPKPTKLVPFPKCASAPL 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246
            P + P F          +   G   A+  L+ F   +   Y+     P  +    S+LS
Sbjct: 175 PPKHDPIF---GAALTGNVQKGGRDAAVADLQSFLTYRAERYLYHISAPDASEMYCSRLS 231

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMAFYPSV- 301
            +L++G LS R+    + +    L    K        ++ + + WR  +   +   PS+ 
Sbjct: 232 AHLALGSLSVREVVQSIAKRRAQLSPMEKKTFGRNLTAFGSRVAWRCHFVQKIEDQPSIE 291

Query: 302 --CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
             CM   F    E      +    QAW  G TG+P IDA MR L + GW+  R+R +  S
Sbjct: 292 TCCMHPAFEGIRED---EHNDAYFQAWAAGQTGYPFIDACMRNLVSEGWITFRMRAMLVS 348

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L +DWRI  ++      D +   +    Q    +G   +   R++NP  Q +  D
Sbjct: 349 FASYHLWLDWRITGKHLARVFTDYEPGIHYSQLQMQ--SGVTGINTMRVYNPIKQSQEHD 406

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
           P G FIR W+PEL  VP ++IH P  W        + +L  +YP PI+DH+ A      +
Sbjct: 407 PTGKFIRKWVPELRAVPNEFIHEPWKWKGTLLDDVEFELGRDYPEPILDHEVAARQAKKR 466

Query: 474 YYAAKK 479
               +K
Sbjct: 467 ISDVRK 472


>gi|114769238|ref|ZP_01446864.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
           photoreceptor) [alpha proteobacterium HTCC2255]
 gi|114550155|gb|EAU53036.1| DNA photolyase, Cryptochrome 1 apoprotein (Blue light
           photoreceptor) [alpha proteobacterium HTCC2255]
          Length = 465

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 148/478 (30%), Positives = 222/478 (46%), Gaps = 28/478 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R D R +D++AL AA H+S   +I +FI   E +   G +      +  ++   +K
Sbjct: 8   IIWFRRDFRFSDHEALSAA-HSSGRPIIPIFIFD-EVFEALGAAP--KWRLGLAIECFKK 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L + G      +     ++ E L     +     ++++R Y+   + RD  ++  L   
Sbjct: 64  KLERMGSNLILRRG----NACEILQELVNETGALDVYWSRAYDPVSIHRDTKVKSLLNG- 118

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA----DLRSLPVPAIRLTG 186
               SF   VL  P      + + +KVYTPF + +   L        +  L  P +    
Sbjct: 119 ---TSFKGHVLFEPWVPKTKSGENFKVYTPFWRHVSSQLTVNSTLSKISKLHSPHVWPKS 175

Query: 187 PVTPSN-IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +  +  +    +     +     +GE+ AL+ L  F   KV  Y   RD P    TS L
Sbjct: 176 DLLSNWGLGEEMNRGRNVVSKYINVGEEVALNKLENFIVSKVNGYKIDRDFPMRHATSGL 235

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +SPR  +N L+  F     K   GA  +L EL+WREF  HL+  +P +    
Sbjct: 236 SENLTYGEISPRLIFNSLRNTF----DKNDLGAEHFLKELVWREFAYHLLWHFPKLDTQC 291

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
               W +   W   +   +AW QG TG   +DA MR+L T G MHNRLRMI  S+L K L
Sbjct: 292 WRGEWND-FPWKGINKNAKAWMQGRTGQSFVDAGMRELYTTGTMHNRLRMIVGSYLTKHL 350

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
             DWRIG ++F   L+D D ASN  GWQW A  G D+ PYFRIFNP +Q ++FD  G + 
Sbjct: 351 QTDWRIGLKWFEDCLIDWDPASNAMGWQWIAGCGADAAPYFRIFNPNLQAEKFDSDGQYR 410

Query: 426 RHWLPELNNVPTQYIHA--PHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           + WL     +  +      P +W L  + ++ N    I+D        L+ Y   KKQ
Sbjct: 411 KKWLEADKELHAKAFFDAIPVAWKLSADKINQN---EIIDLSLGRKIALDAYAIFKKQ 465


>gi|322510730|gb|ADX06044.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake
           phycodnavirus 1]
          Length = 443

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 144/472 (30%), Positives = 224/472 (47%), Gaps = 38/472 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW---RQHGISARQSHFIYASLL 66
            L   R D R+ DN  L  A  N    VI +FI TPEQ    +    S     F+   L 
Sbjct: 3   TLFIFRRDFRVQDNVGLNYAMTNFK-NVIPIFIFTPEQIDKNKNKYFSDHSVQFLCECLE 61

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++++      I         + D +  + S      +T + +N+ Y     +RDK +E+ 
Sbjct: 62  ELKEK-----IGLHI----FYGDYMNVIRSIHKDHHLTHIVFNQDYSPYSRKRDKTIEQW 112

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            Q  ++ C   +D +L P G+        Y VYTPF+  + QN      +   V  I+  
Sbjct: 113 CQSEQIDCIMTEDYLLQPIGTFNKKDGSPYVVYTPFKDNIFQNHSVPMPKKRGVKHIKHI 172

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              +        DY       +   G ++ L  L+K        Y   R+    + T+ L
Sbjct: 173 DFRSNPYYKEKMDYYVYNKHNLVKGGRKHGLKQLKK----SHATYE--RNKLNTE-TTHL 225

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC-MG 304
           S Y+  G LS R+ ++  K++                ++L+WREF+ ++  ++P +    
Sbjct: 226 SSYIKYGCLSIREVYHSFKDD-------------DLKSQLVWREFFYYINYYFPELIDKS 272

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           K +    + I+W ++   L AWK G TGFP++DA MRQLN  G+MHNR R+I+A+FL + 
Sbjct: 273 KSYQSKYDAIKWVQNKKHLDAWKHGQTGFPVVDACMRQLNHSGYMHNRGRLISANFLNRI 332

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDPQGT 423
           L ++WR GE YF   L+D D   NN  WQW +S G D+ PY  R+FNP +Q KRFD Q  
Sbjct: 333 LGINWRSGELYFAQTLIDYDPCVNNANWQWVSSVGIDTKPYSQRVFNPWLQSKRFDAQCD 392

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +I+ W+PEL +V  + IH       K   +++YP P+VD+      +L  Y 
Sbjct: 393 YIKKWIPELKDVAPKDIHQ-WDISCK-QYNVDYPCPMVDYALCRERSLKMYK 442


>gi|319785752|ref|YP_004145227.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464264|gb|ADV25996.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 476

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 163/473 (34%), Positives = 223/473 (47%), Gaps = 27/473 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M V LVW R+DLR+ D+ AL AA       V  V+I  P++       A    +   SL 
Sbjct: 1   MGVALVWFRDDLRLDDHPALRAALDRGLVPV-PVYIHAPDEEGAWAPGAASDAWRRRSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + ++L+Q+G         +       L +         + +NR+YE +   RD  ++++
Sbjct: 60  ALAEALAQRGSRLLMLHGPSLGT----LQALAALTGAEAVLWNRRYEPHIEARDTRIKRQ 115

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L+   +  +SF+ S+L  P  I       Y+V+TPF       L Q  LR L   + RL 
Sbjct: 116 LRQAGLHAESFNGSLLFEPWEIETKQGDPYRVFTPF---WKNALAQWRLRPLWEASARLP 172

Query: 186 GP-VTPSNIPRFFDYPFQAIDPMF--------PIGEQNALHILRKFCKEKVYYYVEQRDI 236
            P    +   R  D       P +          GE  A   L+ F    +  Y + RD 
Sbjct: 173 SPDQAGAPDGRHLDAIVPETRPDWDAGFWDEATPGEAGARARLQAFLAHGLEGYAQARDR 232

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            A+ GTS+LS +L  G +S      +     V     P      +L EL WREF  H+M 
Sbjct: 233 MAVDGTSRLSAHLHFGEVS-----VQRVAAAVLAAEVPAPDRERFLAELGWREFAHHVMH 287

Query: 297 FYPSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            YP V + +   P      W       L AW++G TG PIIDA MRQL   GWMHNR+RM
Sbjct: 288 HYPHV-VDQDLDPRMADFRWARPLRTTLDAWERGRTGVPIIDAGMRQLWQTGWMHNRVRM 346

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I AS++ K L + WR G  +F   L+D DLA+N  GWQWAA TG D+ PYFR+FNP  Q 
Sbjct: 347 IVASWVTKHLRLHWRHGARWFWDTLVDADLANNTQGWQWAAGTGADAAPYFRVFNPVSQA 406

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-KNDLSLNYPL-PIVDHKKA 466
            +FDPQG +I  WLPEL  +P     AP    D    L+  YP  P VD  + 
Sbjct: 407 MKFDPQGEYIARWLPELAALPLPARFAPWEHPDLLRRLAPRYPRQPQVDLAQG 459


>gi|170065332|ref|XP_001867895.1| cryptochrome-1 [Culex quinquefasciatus]
 gi|167882412|gb|EDS45795.1| cryptochrome-1 [Culex quinquefasciatus]
          Length = 539

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 123/506 (24%), Positives = 192/506 (37%), Gaps = 58/506 (11%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAK-----VIAVFIATPEQWRQHGISARQSH 59
           ++    + W R  LR+ DN AL AA      +     +  VFI  P   R   +   + H
Sbjct: 2   SSKQTAVHWFRKGLRVHDNPALAAAVDRVRGQPSKLVLRPVFILDPGIIRWLRVGPNRLH 61

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
            +                           + +E       +  VT L +    E   V+R
Sbjct: 62  VVR-------------------------GNPVEMFPELFREWNVTLLTFEHDIEPYSVKR 96

Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-------- 170
           D  + +   Q +V  +      +  P  IL        +      +L             
Sbjct: 97  DATVRELARQAKVEVQVEKSLTIYDPDEILKKNGGKIPLTYQKYGSLASMCKTPGPIGVP 156

Query: 171 -QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEK 226
            +    S+P    R        + P   +   +  D     FP GE  AL  L+ +   K
Sbjct: 157 DKVPAESVPEKDKRERKDGKCYDPPTLDELKVRQEDLGECKFPGGETEALRRLQDYMSRK 216

Query: 227 VY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +   + +    P      T+ LSPY+  G LS R     LK+       K      S +
Sbjct: 217 SWVCAFEKPNTSPNSLEPSTTVLSPYVKFGCLSARLFMAELKKVL--AGQKHSQPPVSLV 274

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +L+WREFY    A  P+            ++ W  +   L AW  G TG+P IDA MRQ
Sbjct: 275 GQLMWREFYYCAAAAEPNFDKM-VGNSVCLQVPWETNPEHLAAWTHGRTGYPFIDAIMRQ 333

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H+  R   A FL + DL + W  G+  F   LLD D A N G W W  S    
Sbjct: 334 LRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLLDADWALNAGNWMW-LSASAF 392

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLN 455
              +FR+++P   GK+ DP+G +I+ ++PEL   P   I+ P     +        +  +
Sbjct: 393 FHQFFRVYSPVAFGKKTDPEGKYIKKYVPELAKFPAGIIYEPWKANLETQKKLGCIIGKD 452

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQS 481
           YP  IV H++     +++   A +++
Sbjct: 453 YPHRIVIHEEISKKNISRMSEAYRKN 478


>gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio]
          Length = 520

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 133/480 (27%), Positives = 220/480 (45%), Gaps = 31/480 (6%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQS 58
           +A    +  LRNDLR+ DN+  + A  N++  +I ++   P  ++             + 
Sbjct: 2   SASRTVICLLRNDLRLHDNEVFHWAQRNAE-HIIPLYSFDPRHYQGTYHYNFPKTGPFRL 60

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  S+  ++  L + G      Q    D   E +        V+ + ++ +    E  
Sbjct: 61  RFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQLG---SVSTVAFHEEVASEEKS 117

Query: 119 RDKLLEK-RLQHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRS 176
            ++ L++   Q++V  ++F  S L     +   H   +  VYT FRKA+        + S
Sbjct: 118 VEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLS 177

Query: 177 LPVPAIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKFCKEKVY-- 228
            P         +    IP F       P       FP   GE  AL  L+ +  +     
Sbjct: 178 TPEQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDTNAVA 237

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y E R+ +  +  +++ SP+L++G +SPR  + ++K+  V+         +  + EL+W
Sbjct: 238 TYKETRNGMIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERT--ANQSTYWVIFELLW 295

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R++++ +   Y +       +   + + WN D  +  AWK+G TG P +DA MR+L   G
Sbjct: 296 RDYFKFVALKYGNRIFYMNGL-QDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRELALTG 354

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND     R
Sbjct: 355 FMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPREN-R 413

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKNDLSLN--YPLPIV 461
            FN   QG  +D  G ++R W+PEL  +    +H P     S L    +SLN  YP PI+
Sbjct: 414 KFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQVSLNQTYPCPII 473


>gi|87199776|ref|YP_497033.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135457|gb|ABD26199.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 454

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 146/481 (30%), Positives = 221/481 (45%), Gaps = 38/481 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW R D  +            ++  VI V+I   +  R   +      +++ SL ++
Sbjct: 4   PVIVWFRRD--LRLADQAALLAAAAEGPVIPVYILDDDTPRHCRMGGASRWWLHHSLAEL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL + G      +        E L +   +     +   + YE      +K + K   
Sbjct: 62  DASLRKLGSRLILRRGK----CHEELAAVRREAGARVVHALQHYEPWWRNAEKAVAKT-- 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +     + + L P GS+     + YK+YTPF  AL++ +  A     P    RL  P 
Sbjct: 116 --IRLVLHEGNYLAPAGSVRTGMGRPYKIYTPFWHALLERMPPAPPLPAPE---RLEAPA 170

Query: 189 TPSNIPRFFDYPFQAIDPMFPIG--------EQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
                    D+      P +  G        E  A   L+ F  ++V  Y E R++P+I+
Sbjct: 171 VWPTSDALDDWKLLPTAPDWAGGFRETWTPGENGAEERLQDF-ADRVARYGETRNLPSIE 229

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS+LSP+L  G +SP   W+R+        +        +L EL WR++ ++++  +P 
Sbjct: 230 GTSRLSPHLHFGEISPATIWHRV--------VNAGGSVDVFLGELGWRDYAQNVIVQFPD 281

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                      +++EW  D   L+AW+QG TG+PI+DA MR+L   GWMHNR+RMI ASF
Sbjct: 282 YGSRNA-REAYDRLEWRDDPEALRAWQQGRTGYPIVDAGMRELWHTGWMHNRVRMIAASF 340

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           LVK LL+DWR GE +F   L+D D ASN   WQW A TG DS  + RI  P  Q  +FD 
Sbjct: 341 LVKHLLIDWREGERWFWDTLVDADYASNAVNWQWTAGTGVDSNMFVRIMAPLTQSPKFDA 400

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            G +IR W+PEL ++  + IH P            YP  IV H +A    L  +   K+ 
Sbjct: 401 AG-YIRQWVPELAHLSDRDIHDP------AVPPRGYPAKIVSHSEARARALAAHDRMKQP 453

Query: 481 S 481
           +
Sbjct: 454 A 454


>gi|302864753|ref|YP_003833390.1| deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
           27029]
 gi|302567612|gb|ADL43814.1| Deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
           27029]
          Length = 440

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 140/453 (30%), Positives = 220/453 (48%), Gaps = 29/453 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +V    DLR+ D+ AL AAC   D +V+ +++  P       +S  ++ F++ SL  +
Sbjct: 5   TAVVLFTRDLRVHDHPALAAACSAFD-RVVPLYVLDPAL---QKLSPNRTRFLHQSLADL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +++L ++G      +     ++++       +     +  +        RR++ L     
Sbjct: 61  REALRKRGGDLVIRRGDPVAETVK----LARKVGAEGVGLSADVSRYAHRRERRLRAECD 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +HR+  + F    ++ PG++       Y+V++P+ +A      + +L +     +RL   
Sbjct: 117 RHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQGVRWRDELAAP--KRVRLPDG 174

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V P    R  D P          GE  A   L  +    +  Y +  D  A   TS+LSP
Sbjct: 175 VDPG---RLPDPPKGDSPDAAVGGETVARRRLTAWLPT-LDRYDDIHDDMAGDETSRLSP 230

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G +SP    NR  +               ++ +L WR+FY  ++A +P +      
Sbjct: 231 YLRFGCVSPLAVANRAGDR-----------DGPFVRQLCWRDFYHQVVAGFPDLSTVAYR 279

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               E  +W  D H   AW +G TG PI+DA MRQL   GWMHNR R+ITA +L K L +
Sbjct: 280 RGARE--DWRDDPHAFDAWAEGRTGMPIVDAGMRQLRAEGWMHNRARLITAGYLTKHLGL 337

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR G E F   LLDGD  +N+G WQW A TGND+ PY R FNP  Q +R+DP G ++R 
Sbjct: 338 DWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPY-RGFNPVRQAERYDPDGAYVRR 396

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           W+PEL +V  + +H P    D+   +L+YP P+
Sbjct: 397 WVPELASVAGKAVHQPWRLPDEVRHTLDYPPPL 429


>gi|187931260|ref|YP_001891244.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712169|gb|ACD30466.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 499

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 124/483 (25%), Positives = 212/483 (43%), Gaps = 31/483 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+TDN AL  A    D  ++ ++I  PE W+Q  +S RQ  F+   L ++
Sbjct: 1   MQIVWFKRDLRVTDNLALSLASEKGD--ILQLYIIEPELWQQPDMSHRQYLFLSECLEEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
              L++ G            D++E  +    +  +  ++ +++   +   +RD  LEK  
Sbjct: 59  NTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQRDIKLEKFF 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I              ++            + + + + +++A  +   +   ++  P
Sbjct: 115 KQNNIVWHQPYQ-----NGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKFICENQIKIP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
              S    + D   +        G   AL IL  F  ++   Y ++   P  A +  S+L
Sbjct: 170 TAESLGLEYDDCYKR-----QKGGRIRALRILDSFLYQRGCGYTKEMSSPVTAFKSCSRL 224

Query: 246 SPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           SPY++ G +S ++ + +       +KE  V    K  S   S+L+ L W   +   +   
Sbjct: 225 SPYIAFGAISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFLSRLRWHCHFMQKLEDQ 284

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           PS+        + +      +    +AWK   TG+P+IDA MR L   GW++ R+R +  
Sbjct: 285 PSIEYENLHSAYDQLRTEPLNQQCFEAWKTDNTGYPMIDACMRALIATGWLNFRMRAMLM 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP  Q    
Sbjct: 345 SFASYHLWLDWRVTSLYLARLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNPIKQSIDQ 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G FIR WLPEL NV  + IH P  WL+K++ SL+YP P +D K+A     +  Y  +
Sbjct: 403 DPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTIDEKQARKFAADNIYKIR 459

Query: 479 KQS 481
           K S
Sbjct: 460 KSS 462


>gi|307329598|ref|ZP_07608757.1| Deoxyribodipyrimidine photo-lyase [Streptomyces violaceusniger Tu
           4113]
 gi|306884792|gb|EFN15819.1| Deoxyribodipyrimidine photo-lyase [Streptomyces violaceusniger Tu
           4113]
          Length = 454

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 134/474 (28%), Positives = 222/474 (46%), Gaps = 23/474 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  L    +DLR++DN  L  A  +++ +V+ +F+              +  F+  +L 
Sbjct: 1   MSTSLSVFTSDLRLSDNPVLRGATRSAE-RVVPLFVVDRGLAGTGFAVPNRVAFLADALA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G      +     D++  +     Q    ++           RR++ L + 
Sbjct: 60  DLDAGLRERGGRLVVRRG----DAVAEILRAARQADAEEVHIAGGVSGYATRREQRLREA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+          +V+  + PG +       + V+TP+ +A  +  ++  L +    ++  
Sbjct: 116 LEADGRRLRVHGAVVTAVEPGEVAPAGKDHFAVFTPYFRAWQRAGLREALTAPRTVSVPS 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                P         P      +   GE      +R + +  +  Y +++D  A   TS+
Sbjct: 176 GLRSEPVAAVTSLA-PGSPSPGLPEGGETAGRRRVRSWWRSGLADYADRQDDLAGDATSR 234

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LSP +  +R ++          +GA +++ +L WR+F+  ++A  P     
Sbjct: 235 LSPYLHFGCLSPVELVHRARKA-------GGAGADAFVRQLAWRDFHHQVLAARPDAA-H 286

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             + P  ++  W  D   + AWK G TG+P++DA MRQL   GWMHNR R++ A FL K 
Sbjct: 287 ADYRPRGDR--WRHDEAEIAAWKAGRTGYPLVDAGMRQLRHEGWMHNRARLLVAGFLTKT 344

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L  DWRIG  +F+  L+DGDLA+N   WQWAA TG D+ P  R+ NP  Q +RFDP G +
Sbjct: 345 LYQDWRIGARHFLDLLVDGDLANNQLNWQWAAGTGTDTRP-NRVLNPLTQARRFDPDGAY 403

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +R W+PEL  V    +H P          L+YP PIVD ++     L ++  A+
Sbjct: 404 VRRWVPELAEVTGSGVHTPWRLPKAERDRLDYPGPIVDLQEG----LARFRDAR 453


>gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio]
 gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio]
          Length = 558

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 131/494 (26%), Positives = 211/494 (42%), Gaps = 30/494 (6%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYA 63
           +  ++HL   R  LR+ DN +L  A  +S A +  V++      +    + A +  F+  
Sbjct: 2   SHRTIHL--FRKGLRLHDNPSLLGALASSSA-LYPVYVLDRVFLQGAMHMGALRWRFLLQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +   L   G        S        L     Q  +T++ Y+ + E    R DK +
Sbjct: 59  SLEDLDTRLQAIGSRLFVLCGST----ANILRELVAQWGITQISYDTEVEPYYTRMDKDI 114

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +   Q   +   +     L     I+        +       ++  L + +  +  V   
Sbjct: 115 QTVAQENGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIE 174

Query: 183 RLTGPVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
                VTP ++ R +  P  A        + ++P GE +AL  L K  + + +   + + 
Sbjct: 175 DFQRCVTPVDVDRVYAVPSLAHLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKP 234

Query: 234 RDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           R IP   +  T+ LSPYLS+G LS R  ++RL   +            S   +++WREF+
Sbjct: 235 RTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLNCIYAQSK-NHSLPPVSLQGQVLWREFF 293

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             + +  P+    +       +I+W  D   L+ W+   TGFP IDA M QL   GW+H+
Sbjct: 294 YTVASATPNFTKMEG-NSICLQIDWYHDPERLEKWRTAQTGFPWIDAIMTQLLQEGWIHH 352

Query: 352 RLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
             R   A FL + DL + W  G + F   LLD D + N G W W +++      Y RIF 
Sbjct: 353 LARHAVACFLTRGDLWISWEEGMKVFEEFLLDADYSVNAGNWMWLSASAFFHK-YTRIFC 411

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHK 464
           P   G+R DPQG ++R +LP L N P+QYI+ P    +         +  +YP PIV H 
Sbjct: 412 PVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSAGCIIGKDYPRPIVSHI 471

Query: 465 KACHHTLNQYYAAK 478
           +A    L      +
Sbjct: 472 EASQRNLELMRQVR 485


>gi|294507095|ref|YP_003571153.1| deoxyribodipyrimidine photolyase [Salinibacter ruber M8]
 gi|294343423|emb|CBH24201.1| Deoxyribodipyrimidine photolyase [Salinibacter ruber M8]
          Length = 494

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 200/472 (42%), Gaps = 25/472 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L   R DLR+ DN  L  AC  SD +V+  FI  P Q          + F   +   + 
Sbjct: 36  SLFLFRRDLRLADNTGLARACRASD-EVVPAFIFDPRQCDP----DNNAFFSEHAFAFLV 90

Query: 70  KSLSQKGIVFQYHQCSNF---DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +SL +     +      F    D    L        ++ +  NR Y     RRD  L   
Sbjct: 91  RSLKELRRRLRERGGRLFVFEGDPAAILSELISAGDISAVHVNRDYTPFARRRDDQLRSV 150

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            +      +S +  +L  P  +       Y  +TPFR+             +  P     
Sbjct: 151 CREEGARFQSSNALLLTEPEEVQPSGGGAYHTFTPFRRRAQSVSTPPPRGKVEGPFCDRA 210

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             V  + +  +  YP   +      G    +  L +   E +  Y + R  PA +  + L
Sbjct: 211 LSVETTPLETYDRYPTDDLRA--KGGRAEGIEFLEEI--ETLGAYRDARHQPAKESLTAL 266

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +   G +S R+    +K+ F D            +++  WR+FY HL+   P      
Sbjct: 267 SAHHKFGTISIRESLYVVKKAFED--------YHKLISQFYWRDFYTHLLFHRPEQLTT- 317

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              P    I W  +      W +G TG P +DA MR+L   G+MHNR+RM+ ASFL KDL
Sbjct: 318 SLRPIGRHIPWRNERGEFDRWHEGATGVPFVDAGMRELRETGYMHNRVRMVVASFLTKDL 377

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR G ++F   L D D A N G WQWAAS G D     RI+NP  Q ++ DP+  +I
Sbjct: 378 LVDWRWGAQHFARTLTDYDPAVNAGNWQWAASVGTDYR--LRIYNPYSQAEKHDPEAEYI 435

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + W+PE+ +V    + A  +  D +D +  YP PIVD   A H   + +  A
Sbjct: 436 KRWVPEVRDVDADRL-ASGTQEDFSDAAPGYPAPIVDRNDAYHRAKDAFREA 486


>gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum]
 gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum]
          Length = 512

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 120/495 (24%), Positives = 194/495 (39%), Gaps = 33/495 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LRI DN +L     N+      +FI  P       +   +  F+   L  + 
Sbjct: 6   TVHWFRKGLRIHDNPSLREGLINAKTF-RCIFILDPWFAGASNVGINKWRFLLQCLSDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +        +        E L     Q   T   +    E     RD+ ++     
Sbjct: 65  NSLKKLNSRLFVIKG----QPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMCSE 120

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I   +     L     I+N       +     + +++ +   +     +    L    
Sbjct: 121 LGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQNILECIDPPERAVPSIDKEFLGNAF 180

Query: 189 TPSNI--------PRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK--VYYYVEQR 234
           TP+          P   +  F+ I+ +    +  GE  AL  L+   + K  +  + + +
Sbjct: 181 TPTKYDHDKIFGVPTVEELGFEEINNIARHVWVGGETEALIRLQCHLERKAFIASFGKPK 240

Query: 235 DIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
             P   +   + L+PYL  G LS R  ++ L E +    I+      S   +L+WR+F+ 
Sbjct: 241 MTPQSLLASPTGLAPYLKFGCLSTRLYFSELNELYKK--IRKSQPPLSLHGQLLWRDFFY 298

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                 P+        P   +I W+K+   L  W  G TG+P IDA M QL   GW+H  
Sbjct: 299 CASTNNPNFDRM-VGNPICVQIPWDKNPRALSKWANGQTGYPWIDAIMIQLRQEGWIHCI 357

Query: 353 LRMITASFLV-KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
            R   A FL   DL + W  G + F   LLD D + N G W W  S  +    +   + P
Sbjct: 358 ARHAVACFLTWGDLWLSWEEGMKVFDELLLDADWSVNAGYWMW-YSCSSFYKEFIHCYCP 416

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKK 465
              G++ DP G +IR ++P LNN+P +YIH P    +         + ++YPLPIV+H  
Sbjct: 417 VRFGRKVDPNGDYIRRYIPALNNMPNKYIHEPWLAPESIQITANCIIGIDYPLPIVNHIN 476

Query: 466 ACHHTLNQYYAAKKQ 480
           A    + +   A +Q
Sbjct: 477 ASKINIERMKLAYQQ 491


>gi|117164673|emb|CAJ88219.1| putative deoxyribodipyrimidine photolyase [Streptomyces ambofaciens
           ATCC 23877]
          Length = 457

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 130/478 (27%), Positives = 225/478 (47%), Gaps = 26/478 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V    DLR+ D+  L AA   +D +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MSVAVVLFTADLRLHDHPPLRAALRAAD-EVVPLFVLDPGIHAAGFDAPNRRAFLADCLH 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++                        +    ++            R++ L + 
Sbjct: 60  DLDASLRRRAGRLVVRSGPVVRVV----REVVAECGAGEVHLAAGVTAYAHHREERLREG 115

Query: 127 LQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L    +     ++V  ++ PG++       + V+TP+ +   +  ++    +     +R+
Sbjct: 116 LGGSGVALHAHETVTTVVAPGAVTPAGSDHFAVFTPYFRRWARESLREPFGAP--RTVRV 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              V    +P   + P     P  P  GE         + +  +  Y ++ D  A   TS
Sbjct: 174 PDGVRGGPLPDRAEVP--GTSPGLPDGGETAGRDRFSLWSRAGMSAYEDRHDDLAGDATS 231

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL  G LS  +  +R +        +   GA +++ +L WR+F+  ++A  P    
Sbjct: 232 RLSPYLHFGALSAVELVHRARR-------RGGPGAEAFVRQLCWRDFHHQVLAARPK-AS 283

Query: 304 GKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            + +    +     KD+   + AW++G TG+P++DAAMRQL   GWMHNR R++ ASFL 
Sbjct: 284 AEDYRTRHDHWRGEKDAAADISAWREGRTGYPVVDAAMRQLRHEGWMHNRARLLVASFLT 343

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L VDWRIG  +F+  L+DGD+ +N   WQW A TG D+ P+ R+ NP +QG+RFDP G
Sbjct: 344 KTLYVDWRIGARHFLDLLVDGDIVNNQLNWQWVAGTGTDTRPH-RVLNPVVQGRRFDPDG 402

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            ++  W+PEL +V  + +H P    +    +L+YP P++D        L+++  A+ +
Sbjct: 403 AYVHRWVPELRDVDGKRVHEPWRLPEDQRAALDYPAPLIDLADG----LDRFRHARGR 456


>gi|76802366|ref|YP_327374.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
 gi|97047786|sp|Q3IPX9|CRYD_NATPD RecName: Full=Cryptochrome DASH
 gi|76558231|emb|CAI49819.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
          Length = 474

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 127/479 (26%), Positives = 199/479 (41%), Gaps = 30/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFI 61
           M   +VW R+DLR+TDN  L  A   ++  VI V+   P+     ++        ++ F 
Sbjct: 1   MDTAVVWFRDDLRVTDNPTLADAVAAAET-VIPVYTFDPDRYTESEYGPPKTGGHRAVFR 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             ++  ++ SL  +G                 +     +     ++   +    E RR  
Sbjct: 60  RQAVADLRASLRDRGGDLLVRSG----RPATVVPELAQRAGADAVYAQTKPATEERRRAA 115

Query: 122 LLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---- 176
            +   L    I  +      L  P  +      +   +TP+RK         D RS    
Sbjct: 116 DVASALDDAGIALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRDPRSAPET 175

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVY--YYVEQ 233
           +P P     GPV         + P      + F  GE      +  +  E  +   Y   
Sbjct: 176 VPTPDGLTPGPVPTVESLGVSEPPTDDRAVLEFEGGESAGKRRVESYIWEGDHLREYKTT 235

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +S+ SP+L+ G LSPR     ++    + +       +  + EL WR+F++
Sbjct: 236 RNGLLGADYSSKFSPWLAAGCLSPRWLHREVERYEDERV--ANEDTYWLVFELAWRDFFQ 293

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                Y +    KP       I+W++D  L + W  G TG P +DA MR+LN  G+M NR
Sbjct: 294 FQFEKYGA-TFFKPGGIRERNIDWDRDRALFERWADGETGVPFVDANMRELNRTGYMSNR 352

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASFL   L +DWR G  YF ++L+D D+ASN G W + A  GNDS    R F+  
Sbjct: 353 GRQNVASFLAGVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAGVGNDSR--DRYFDVR 410

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKK 465
            Q +R+D    +I  WLPEL  +P    H P    +        +L ++YP P+VD   
Sbjct: 411 SQAERYDSDAEYITTWLPELAALPATIAHQPWQLSEAEQREYGVELGVDYPEPVVDIDA 469


>gi|126461586|ref|YP_001042700.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
           17029]
 gi|126103250|gb|ABN75928.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 471

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 140/474 (29%), Positives = 214/474 (45%), Gaps = 25/474 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L  A       +I +FI  PE      + A     +   +    +
Sbjct: 8   ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAQ 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      ++  L +   +     + ++R +E +   RD+ +   L+  
Sbjct: 64  ALEGLGSRLVLRRGP----ALAVLKTLVAETGAAGVHWSRLWEPDWRARDEGVTAGLRQA 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPA-IRLT 185
            I         +  P  +       Y+VYTPF KA+    V         LP PA   ++
Sbjct: 120 GIEAARHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASFPPPARLPSPAEWPVS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   ++ R  +     + P   +GE  A   L +F    +  Y  +RD P    TS+L
Sbjct: 180 ERLASWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPVTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +S R  W+           + ++GA  +L EL WREF  HL+   P +   +
Sbjct: 240 SENLTYGEISARSLWHAGMR----ARAEGRAGAEKFLQELAWREFGWHLLYHTPEIAR-R 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +    +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L K L
Sbjct: 295 NWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFRIFNP  Q ++FDP+  + 
Sbjct: 355 LTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414

Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           R +L E+   P     A     P SW  + D    YP P+V   +     L  Y
Sbjct: 415 RRFLAEIARRPGPEALAFFEAVPRSWGLRPDRC--YPRPVVGLAEGRERALAAY 466


>gi|302797733|ref|XP_002980627.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
 gi|300151633|gb|EFJ18278.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
          Length = 499

 Score =  330 bits (845), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 125/480 (26%), Positives = 214/480 (44%), Gaps = 36/480 (7%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SA 55
            +     V ++W RNDLRI DN+AL+ A  +S + V+ V+   P  +             
Sbjct: 17  SSRNGKGVSIMWFRNDLRIVDNEALFKAWASS-SSVLPVYCVDPRHFGTTHYFKFPKTGE 75

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++ F+  SL+ ++K+L ++G+       +        L S         ++   +    
Sbjct: 76  LRAQFLLESLVDLKKNLKKRGLDLVIRSGNPEF----ILPSLVEAVGADTIYAQEETCSE 131

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           E++ +K ++K +  +   +    + +     +     ++  VYT FRKA+  +       
Sbjct: 132 ELQVEKAVKKSIGTKAKLELVWGTTMYHLNDLPFTTARLPDVYTQFRKAVESSSRVRPCL 191

Query: 176 SLPVPAIRLTGPVTP--SNIPRFFDYPFQAIDP---------MFPIGEQNALHILRKFCK 224
            LP     L   +     ++ +  +     + P          F  GE  A+  L ++  
Sbjct: 192 KLPQTLGPLPDSLGEKVGDLDKVPNLSHLGLRPREQSSLAAMQFAGGETAAIQRLCEYFW 251

Query: 225 EKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
            K     Y E R+ +     +++ SP+L+ G +SPR        ++        +  +  
Sbjct: 252 TKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIHEEASIKYEKERT-ANNSTYWV 310

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           L ELIWR+++R L   Y +               W++D  L +AW+ G TG+P+IDA M+
Sbjct: 311 LFELIWRDYFRFLSMKYGNSIFHLEGPRKVRTKSWSQDKTLFEAWRTGTTGYPLIDANMK 370

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   G+M NR R I  SFLV+D+ +DWR+G E+F S LLD D  SN G W + A  GND
Sbjct: 371 ELYATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFESCLLDYDPCSNYGNWTYGAGVGND 430

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
                R F+   Q + +DP G+++ HW+P+L  +PT   H P          + Y   IV
Sbjct: 431 PRE-DRYFSIPKQAQTYDPDGSYVSHWIPQLQELPTDARHFPK---------VGYLKKIV 480


>gi|126663928|ref|ZP_01734923.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38]
 gi|126624192|gb|EAZ94885.1| Deoxyribodipyrimidine photolyase [Flavobacteria bacterium BAL38]
          Length = 486

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 112/484 (23%), Positives = 198/484 (40%), Gaps = 32/484 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+ D++AL+ A   S   ++ ++I  P   +    S R   FI  SL  +
Sbjct: 1   MKVVWFKRDLRLHDHEALHEALSTSGKTLL-LYIFEPSLMKDIHYSQRHFDFIKQSLEAL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
           QK L +        Q     +++           + +++ +++  I     RD  + K L
Sbjct: 60  QKELQKYHTQILIIQG----EAVPVFQKLTQVISIREIYSHQETGIKLTYERDLAVGKLL 115

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + + I              I N  ++  K    +++     + +  L   P P       
Sbjct: 116 KEKGIIW---------NEYITNGVIRGIKNRKNWKEDWYDYMDKDCLPFNPTP-RSFVKY 165

Query: 188 VTPSNIPRFFDYPFQAI--DPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
           +    +   FD P      +P F   G   AL  +  F +E+V  Y      P    +G 
Sbjct: 166 IEIEELENAFDVPSIKTVHNPNFQKGGVPTALRYMNSFFEERVQNYSNHISKPELGRKGC 225

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPY++ G +S RQ + +  E       K +     + + L W+  +        S  
Sbjct: 226 SRLSPYIAWGNISIRQVYTKAWEMHQQGKFKRQISN--FASRLRWQAHFIQKFE-MESTM 282

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                      +    +    +AW  G TG P++DA MR LNT G+++ R+R +  SF  
Sbjct: 283 EFIAVNKGYRNLIQRVNEKYHKAWITGKTGVPLVDACMRCLNTTGYLNFRMRALVVSFYT 342

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
             L   W+    +   Q LD +   +    Q     G   +   R++NP       D  G
Sbjct: 343 HHLFQPWQNCSPHLAQQFLDFEPGIHYPQIQMQ--AGVTGINTLRVYNPVKNSYEHDADG 400

Query: 423 TFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
           TFI+ W+PEL  +P ++IH P         L   ++  +YPLPIV+ ++A   + + +++
Sbjct: 401 TFIKKWVPELATIPAEFIHEPWKLTPIEQILYNFEIGKDYPLPIVNLEEARKFSSDFFWS 460

Query: 477 AKKQ 480
            +K 
Sbjct: 461 MRKN 464


>gi|315501047|ref|YP_004079934.1| deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
 gi|315407666|gb|ADU05783.1| Deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
          Length = 440

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 138/453 (30%), Positives = 220/453 (48%), Gaps = 29/453 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +V    DLR+ D+ AL AAC   D +V+ +++  P       +S  ++ F++ SL  +
Sbjct: 5   TAVVLFTRDLRVHDHPALAAACSAFD-RVVPLYVLDPAL---QKLSPNRTRFLHQSLADL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +++L ++G      +     ++++       +     +  +        RR++ L     
Sbjct: 61  REALRKRGGDLVIRRGDPVAETVK----LARKVGAEGVGLSADVSRYAHRRERRLRAECD 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +HR+  + F    ++ PG++       Y+V++P+ +A      + +L +     +RL   
Sbjct: 117 RHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQGVRWRDELAAP--KRVRLPDG 174

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V P    R  D P          GE  A   L  +    +  Y +  D  A   TS+LSP
Sbjct: 175 VDPG---RLPDPPKGDSPDAAVGGEAVARRRLTAWLPT-LDRYDDIHDDMAGDETSRLSP 230

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G +SP           + +  +       ++ +L WR+FY  ++A +P +      
Sbjct: 231 YLRFGCVSP-----------LAVATRAGGWDGPFVRQLCWRDFYHQVVAGFPDLSTVAYR 279

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               E  +W  D H   AW +G TG PI+DA MRQL   GWMHNR R+ITA +L K L +
Sbjct: 280 RGARE--DWRDDPHAFDAWAEGRTGMPIVDAGMRQLRAEGWMHNRARLITAGYLTKHLGL 337

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR G E F   LLDGD  +N+G WQW A TGND+ PY R FNP  Q +R+DP G ++R 
Sbjct: 338 DWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRPY-RGFNPVRQAERYDPDGAYVRR 396

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           W+PEL +V  + +H P    D+   +L+YP P+
Sbjct: 397 WVPELASVAGKAVHQPWRLPDEVRHTLDYPPPL 429


>gi|290962800|ref|YP_003493982.1| deoxyribodipyrimidine photolyase [Streptomyces scabiei 87.22]
 gi|260652326|emb|CBG75459.1| putative deoxyribodipyrimidine photolyase [Streptomyces scabiei
           87.22]
          Length = 453

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 127/468 (27%), Positives = 215/468 (45%), Gaps = 21/468 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V    DLR+ D+  L AA  +   +V+ +F+   +       +  +  F+   L 
Sbjct: 1   MNVSVVLFTCDLRLHDHPPLRAAL-DGSRQVVPLFVRDRDVTGAGFAAPNRLAFLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G            D +E +     +    ++           RR++ L + 
Sbjct: 60  DLDTGLRERGGRLVVRSG----DVVEEVCKVAAEADADEVHLAADVSAYAQRREERLRRA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+   +      +V   + PG++L  +   + V+TP+     +  ++    S    A+ +
Sbjct: 116 LEAEGVRLHVHATVTSAVDPGAVLPASTDHFAVFTPYFGHWSRQRLRE--ASAAPRAVHV 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              V    +P            +   GE         + +  +  Y ++ D  A   TS+
Sbjct: 174 PDGVGSEELPSRAGLS-GVSPGLASGGEIEGRSRFSAWLRSGIEAYEDRHDDLAGDATSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G LSP +  +R +            GA +++ +L WR+F R ++A   +    
Sbjct: 233 LSPHLHFGTLSPVELVHRSRRA-------GGPGAEAFVRQLAWRDFNRQVLA---ARPAA 282

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  +   W       +AW+ G TG+P++DAAMRQL   GWMHNR R++TASFL K 
Sbjct: 283 AKADYRAKHDRWRTVPDEAEAWRAGRTGYPVVDAAMRQLRHEGWMHNRGRLLTASFLAKT 342

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR+G  +F+  L+DGD+A+N   WQW A TG D+ P  RI NP  Q KR+DP G +
Sbjct: 343 LYIDWRVGARHFLDLLVDGDVANNQLNWQWMAGTGTDTRP-NRILNPVTQAKRYDPDGEY 401

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           +R W+PEL ++    +H P      +  +L+YP P+V+  +     L 
Sbjct: 402 VRRWVPELADLAAPAVHEPWKLRGLDRAALDYPEPVVELAEGRERFLR 449


>gi|327541206|gb|EGF27750.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
          Length = 488

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 132/497 (26%), Positives = 214/497 (43%), Gaps = 32/497 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFI 61
           M+  LVW RNDLR  D++    A      +  AV    P Q+             ++ F+
Sbjct: 1   MANALVWYRNDLRTIDHEPFLRASTAD--RCFAVHCIDPRQFETTELGFQRTGPFRARFL 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  ++  L   G                 L S      +  + ++ +    E    +
Sbjct: 59  IESLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLA----IDAVHFHHEPGTEEADTAE 114

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +++   QH +         L+ P  +         ++T FRK + +          P+ 
Sbjct: 115 SVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPGLFTDFRKEIEKQCEARSPLEEPIR 174

Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFC--KEKVYYYV 231
               L   V   +IP                   F  G+  A   + ++   ++++  Y 
Sbjct: 175 IQGALPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVYK 234

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           E R+ +     +S+ SP+L+ G LSPR   + ++  + +  ++ KS  +  + EL+WR++
Sbjct: 235 ETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVR-CYEEERVENKS-TYWMIFELLWRDY 292

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +R +   +         +     ++W  D  L + W+ G TG+P++DA MR+L T G+M 
Sbjct: 293 FRWISRKHGVTLFRTSGLRGV-NVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMS 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   ASFL K+L +DWR G  +F SQL+D D+ASN G W +AA  GND+   FR FN
Sbjct: 352 NRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG-FRFFN 410

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
            T Q + +D QG + +HWLPEL ++    IH P     +        L   YP PIVD  
Sbjct: 411 ITKQSRDYDSQGEYAKHWLPELRDLDGTEIHEPWKMSPERQQEVGVTLGKEYPHPIVDLF 470

Query: 465 KACHHTLNQYYAAKKQS 481
            +       Y  AK  S
Sbjct: 471 DSAKENETTYMRAKAAS 487


>gi|293605130|ref|ZP_06687522.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
 gi|292816533|gb|EFF75622.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
          Length = 363

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 159/359 (44%), Positives = 216/359 (60%), Gaps = 7/359 (1%)

Query: 120 DKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  +   L    V       + LL PG++       Y+VYTP+ +     L  A + ++P
Sbjct: 1   DAAVAGALDAIGVDWTLHHGASLLRPGTVTTGKGDCYRVYTPYARTCRDRLRTAPVVAVP 60

Query: 179 VPAIRLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            P  +     +P  +P  FD    P +AI  ++P GE  A   L  F +  +  Y ++RD
Sbjct: 61  PPRPQTPPDWSPDPLPDTFDGFARPSEAIRALWPAGEAAAGDRLEAFTEGVIDAYKDERD 120

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P++ GTS LSPYL+ GVLSP Q            L   K+GA +W+NEL+WREFY+HL+
Sbjct: 121 FPSLPGTSCLSPYLAAGVLSPGQALRAALSANHGELDSGKAGAATWINELLWREFYQHLL 180

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A YPS+ M +P  P T  + W      L+AW+QG TG PI+DAAMRQL  +GWMHNRLRM
Sbjct: 181 AAYPSLSMHQPMKPETAAVPWRDAPDDLRAWQQGKTGIPIVDAAMRQLLALGWMHNRLRM 240

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +TA FL K+LL+DWR+GE +FM+ L+DGDLA+NNGGWQW+ASTG D+VPYFR+FNP  Q 
Sbjct: 241 VTAMFLSKNLLIDWRLGEAWFMAHLVDGDLAANNGGWQWSASTGADAVPYFRVFNPLSQS 300

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +RFDP+G F+R WLPEL ++  + IH P            YP+PIVD  ++    L  +
Sbjct: 301 RRFDPRGVFLREWLPELADLDDKAIHDPSPMERAAA---GYPMPIVDLAQSRLRALEAF 356


>gi|97047983|sp|Q7UJB1|CRYD_RHOBA RecName: Full=Cryptochrome DASH
          Length = 488

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 129/497 (25%), Positives = 212/497 (42%), Gaps = 32/497 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFI 61
           M+  LVW RNDLR  D++    A      +  AV    P Q+             ++ F+
Sbjct: 1   MANALVWFRNDLRTIDHEPFLRASTAD--RCFAVHCIDPRQFETTELGFQRTGPFRARFL 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  ++  L   G                 L S      +  + ++ +    E    +
Sbjct: 59  IENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLA----IDAVHFHHEPRTEEADTAE 114

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +++   QH +         L+ P  +        +++T FRK + +          P+ 
Sbjct: 115 SVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIR 174

Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFC--KEKVYYYV 231
               L   V   +IP                   F  G+  A   + ++   ++++  Y 
Sbjct: 175 IHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVYK 234

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           E R+ +     +S+ SP+L+ G LSPR   + ++    + +       +  + EL+WR++
Sbjct: 235 ETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRYEEERV--KNKSTYWMIFELLWRDY 292

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +R +   + +    +        ++W  D  L + W+ G TG+P++DA MR+L T G+M 
Sbjct: 293 FRWISRKHGATLF-RAGGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMS 351

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   ASFL K+L +DWR G  +F SQL+D D+ASN G W +AA  GND+   FR FN
Sbjct: 352 NRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG-FRFFN 410

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
            T Q + +D QG + +HWLPEL ++    IH P     +        L   YP PIVD  
Sbjct: 411 ITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPHPIVDLF 470

Query: 465 KACHHTLNQYYAAKKQS 481
            +       Y  AK  S
Sbjct: 471 DSAKENETIYMRAKAAS 487


>gi|221116996|ref|XP_002166544.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 526

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 129/499 (25%), Positives = 218/499 (43%), Gaps = 30/499 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------IS 54
           M   ++    + W+RNDLR+ DN+ L  AC +  + V+ ++   P+ ++           
Sbjct: 1   MAGFSSRKTIIYWIRNDLRLHDNECLNFACRDG-SHVLPLYCFDPDHYKLTHHFGFLKTG 59

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             ++  I  ++  ++ SL +KG      +    +   + +        VT + + ++   
Sbjct: 60  IHRAKLILDAVSGLRNSLQKKGSNLVISKHRPKEAIEKLILECEQTAPVTSIVFQKEITK 119

Query: 115 NEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA- 172
            E   +  + K    + I   SF  S L     I     Q+   YT FRK + +  V+  
Sbjct: 120 EETDVEASVFKVCDSKGIKVLSFWGSTLYHIEDIPFQINQIPNTYTLFRKGVEKCPVRKL 179

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA------IDPMFP--IGEQNALHILRKFCK 224
           +     + ++          +P   +  F        +  +FP    E +A+  L ++  
Sbjct: 180 NPIPDKISSLPNLKNFPLGEVPLLNELGFDKNEYEIDVRSVFPFNGSEVDAIKRLNEYLW 239

Query: 225 EKVY--YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
                  Y E R+ +     +++ SP+L++G LSPR  ++++K+      IK     +  
Sbjct: 240 GNNAILTYKETRNGLLGKDYSTKFSPWLALGSLSPRMIYHKIKDFEEQKKIKENDSTYWV 299

Query: 282 LNELIWREFYRHLMAFYPS-VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           + ELIWR++++ + + + + V              W +D +L   W  G TG P +DA M
Sbjct: 300 VFELIWRDYFKFICSKHGNKVFFKGGLKGGKGPWTWKQDLNLFMKWANGDTGIPFVDANM 359

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           ++L   GWM NR R   ASFLVKDL +DWR+G E+F S L+D D+ SN G W + A  GN
Sbjct: 360 KELLATGWMSNRGRQNVASFLVKDLNLDWRMGAEWFESLLIDSDVCSNYGNWNYIAGIGN 419

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSL 454
           D     R FN   Q   +D +G ++R WLP L  +     H P             DL  
Sbjct: 420 DPR-SNRKFNVIKQAADYDEEGDYVRTWLPVLKKL--GICHTPWRLSASELNAGGVDLGK 476

Query: 455 NYPLPIVDHKKACHHTLNQ 473
           NYP PI+   +   H L  
Sbjct: 477 NYPHPIIVAPEWAKHALKM 495


>gi|221638553|ref|YP_002524815.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           KD131]
 gi|221159334|gb|ACM00314.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           KD131]
          Length = 471

 Score =  328 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 138/474 (29%), Positives = 216/474 (45%), Gaps = 25/474 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L  A       +I +FI  PE      + A     +   +    +
Sbjct: 8   ILWFRRDLRLADNPMLAEAAATG-RPLIPLFILDPE---TEALGAAPKWRLGLGVEAFAR 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L   G      +      ++  L++   +     + ++R +E     RD+ ++  L+  
Sbjct: 64  ALEGLGSRLVLRRGP----ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQA 119

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPA-IRLT 185
            I   S     +  P  +       Y+VYTPF KA+    V         LP PA   ++
Sbjct: 120 GIEAASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASSPPPARLPSPAEWPVS 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +   ++ R  +     + P   +GE  A   L +F    +  Y  +RD P    TS+L
Sbjct: 180 ERLACWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPVTSRL 239

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +S R  W+           + ++GA  +L E+ WREF  HL+   P +   +
Sbjct: 240 SENLTYGEISARSLWHAGMR----ARAEGRAGAEKFLQEIAWREFGWHLLYHTPEIAR-R 294

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +    +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L K L
Sbjct: 295 NWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLTKHL 354

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFRIFNP  Q ++FDP+  + 
Sbjct: 355 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPESAYR 414

Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           + ++ E+   P     A     P SW  + D    YP P+V   +     L  Y
Sbjct: 415 QRFVAEIARRPGPEALAFFEAVPRSWGLRPDRC--YPGPVVGLAEGRERALAAY 466


>gi|83814965|ref|YP_445212.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
 gi|83756359|gb|ABC44472.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
          Length = 463

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 200/472 (42%), Gaps = 25/472 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L   R DLR+ DN  L  AC  SD +V+  FI  P Q          + F   +   + 
Sbjct: 5   SLFLFRRDLRLADNTGLARACRASD-EVVPAFIFDPRQCDP----DNNAFFSEHAFAFLV 59

Query: 70  KSLSQKGIVFQYHQCSNF---DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +SL +     +      F    D    L        ++ +  NR Y     RRD  L   
Sbjct: 60  RSLKELRRRLRERGGRLFVFEGDPAAILSELVSAGDISAVHVNRDYTPFARRRDDQLRSV 119

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            +      +S +  +L  P  +       Y  +TPFR+             +  P     
Sbjct: 120 CREEGARFQSSNALLLTEPEEVQPSGGGAYHTFTPFRRRAQSVSTPPPRGKVEGPFCDRA 179

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             V  + +  +  YP   +      G    +  L +   E +  Y + R  PA +  + L
Sbjct: 180 LSVETTPLETYDRYPTDDLRA--KGGRAEGIEFLEEI--ETLGAYRDARHQPAKESLTAL 235

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +   G +S R+    +K+ F D            +++  WR+FY HL+   P      
Sbjct: 236 SAHHKFGTISIRESLYVVKKAFED--------YHKLISQFYWRDFYTHLLFHRPEQLTT- 286

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              P    I W  +      W +G TG P +DA MR+L   G+MHNR+RM+ ASFL KDL
Sbjct: 287 SLRPIGRHIPWRNERGEFDRWHEGATGVPFVDAGMRELRETGYMHNRVRMVVASFLTKDL 346

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LVDWR G ++F   L D D A N G WQWAAS G D     RI+NP  Q ++ DP+  +I
Sbjct: 347 LVDWRWGAQHFARTLTDYDPAVNAGNWQWAASVGTDYR--LRIYNPYSQAEKHDPEAEYI 404

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           + W+PE+ +V    + A  +  D +D +  YP PIVD   A H   + +  A
Sbjct: 405 KRWVPEVRDVDADRL-ASGTQEDFSDAAPGYPAPIVDRNDAYHRAKDAFREA 455


>gi|302799264|ref|XP_002981391.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii]
 gi|300150931|gb|EFJ17579.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii]
          Length = 559

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 132/507 (26%), Positives = 235/507 (46%), Gaps = 38/507 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
            + + +LVW R DLR+ D      A  N+   V+ +FI  P +  +         ++  S
Sbjct: 3   NSKACNLVWFRRDLRVED-NPALLAAANAPGVVLPIFIWCPAEEGEFQPGRHSRWWLKQS 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLL 123
           L+ +  SL+  G      + +   D++  L +       T++F N  Y +   V RD+ +
Sbjct: 62  LIHLDASLASYGCSLLLQKGN---DTLSVLVNIARATGSTQIFCNHLYADPITVARDRRV 118

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS------ 176
           ++RL ++ +   +F+   L  P  I +     +  +  F    ++   + D+        
Sbjct: 119 KQRLLEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSSQARI 178

Query: 177 --------LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCK 224
                   +   A  L  P +   +    D   ++ + +    +  G ++A   L+ F  
Sbjct: 179 FPYREYLDVISFAGNLPTPCSIEELC-LEDESEKSSNELLARTWSPGCKHANDALQAFLV 237

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD--LLIKPKSGAFSWL 282
             +  Y   R+      TS LSPYL  G LS R+ +N ++ +  D   L  P+  A  +L
Sbjct: 238 APLNDYTTSRETTD-NSTSHLSPYLHFGELSIRKLYNCIRSKQRDEEQLFCPRRNAHLFL 296

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             +  RE+ R++   +P            +   W+ D    +AWK G TG+P++DAAMR+
Sbjct: 297 RAIGLREYSRYISFHFPFTQE----QSLLKNFPWSNDEIHFKAWKLGKTGYPLVDAAMRE 352

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L + GW+H +LR++T+SFL+K L + W  G +YF   LLD DL S+  GW++ +    D 
Sbjct: 353 LWSTGWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCLTDG 412

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNY 456
               R+ +P  +G + D +G ++R WLPEL+ +P Q+IH P+S           +L  NY
Sbjct: 413 HELDRVLDPHEEGCKLDSKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELGTNY 472

Query: 457 PLPIVDHKKACHHTLNQYYAAKKQSLL 483
           P PIVD + A +       + ++++ +
Sbjct: 473 PKPIVDMEVAKYRLSQAVKSMREKNAV 499


>gi|301617517|ref|XP_002938187.1| PREDICTED: cryptochrome-2-like [Xenopus (Silurana) tropicalis]
          Length = 862

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 139/506 (27%), Positives = 214/506 (42%), Gaps = 44/506 (8%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE----QWRQHGISARQSHFI 61
           AM   LVW R DLR+ DN AL +A  +    VI VF+        Q           +++
Sbjct: 228 AMKPVLVWFRRDLRLHDNPALISALEHG-VPVIPVFLWCINEETGQNFTLATGGATKYWL 286

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + +LL++ +SL Q+       + +   +  E L S   +     +  N  YE     RD 
Sbjct: 287 HHALLKLNQSLIQRFGSHIIFRVARSCE--EELVSLVHETGADTIIINAVYEPWLKERDD 344

Query: 122 LLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYT--PFRKALIQN------LVQA 172
           L+ + L+ H V  K      L  P S+    + +  + +   F     +N      +   
Sbjct: 345 LISETLRRHGVELKKHHSYCLYEPDSVSTEGVGLRGIGSVSHFMSCCKRNNSAPIGMPLD 404

Query: 173 DLRSLPVPAIRL---------TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
             R LP P              G +         D+    I   +   E  A   L  F 
Sbjct: 405 APRCLPAPCNWPESDHLDTLELGKMPHRKDGTLIDWAVT-IRESWDFSEDGAYTCLANFL 463

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           ++ V +Y ++        TS +SPYL  G +SPR   +             K     +L 
Sbjct: 464 QDGVKHYEKESGRADKPYTSHISPYLHFGQISPRTVLHEAYFT--------KKNVPKFLR 515

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +L WR+    L+  +P +   +P  P  +   W+ D + L+AW++G TG+P++DAAMR+L
Sbjct: 516 KLAWRDLAYWLLILFPDMP-SEPVRPAYKSQRWSSDLNHLRAWQKGLTGYPLVDAAMREL 574

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWM N  R + ASFLV  L + W  G  +F   LLD D+A N   WQ    +G D  
Sbjct: 575 WLTGWMCNYSRHVVASFLVAYLHIHWVHGYRWFQDTLLDADVAINAMMWQNGGMSGLDHW 634

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLDKND--LSLNYP 457
            +  + +P       DP G+++R W PEL  +P +YIH P     S L +    L  NYP
Sbjct: 635 NF--VMHPVDSALTCDPYGSYVRKWCPELAGLPDEYIHKPWKCAPSQLRRAGVILGRNYP 692

Query: 458 LPIV-DHKKACHHTLNQYYAAKKQSL 482
             IV D ++    +L      +K+ L
Sbjct: 693 HRIVLDLEERREQSLKDVVEVRKKHL 718


>gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus]
          Length = 501

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 219/497 (44%), Gaps = 32/497 (6%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFI 61
           T ++  + W R DLR+ DN AL  A + ++ +   +  +++  P+   +  +   +  F+
Sbjct: 2   TKVASVIHWFRLDLRLHDNLALRNAINEAENRKQILRPIYVIDPDIKNR--VGCNRLRFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  +  SL +        +      +IE L     +  V  L      + + V++D+
Sbjct: 60  FQSLKNLDTSLRKINTRLYVIKGK----AIECLPKLFDEWHVKFLTLQVDIDADLVKQDE 115

Query: 122 LLEKRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           ++E+  +   I   K    +V      +  +   +   Y  F   +    V+  ++    
Sbjct: 116 VIEEFCEANNIFVVKRMQHTVYDFNSVVKKNNGSIPLTYQKFLSLVSDVQVKDIIQISKG 175

Query: 180 PAIRLTGPVTPS---NIPRFFDYP---FQAIDPMFPIGEQNALHILRKFCKEKVY--YYV 231
            +         S   +IP   ++     +  +  +P GE   L  L  +  +K +   + 
Sbjct: 176 VSDECKASDYDSQGYDIPSLEEFGVNESELSECKYPGGESEGLKRLDVYMAKKQWVCNFE 235

Query: 232 EQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           + +  P      T+ LSPY+S G LS +  +++LK+  V+   K      S + +L+WRE
Sbjct: 236 KPKSSPNSIEPSTTVLSPYISHGCLSAKLFYHKLKQ--VENGSKHTLPPVSLMGQLMWRE 293

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           FY    +   +            +I W K+   L+AW +G TG+P +DA MRQL   GW+
Sbjct: 294 FYYTAGSGTENFDKM-VGNSVCTQIPWKKNDAHLKAWAEGKTGYPFVDAIMRQLKQEGWI 352

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R + A FL + DL + W  G + F   LLD D + N G W W +++      Y+R+
Sbjct: 353 HHLARHMVACFLTRGDLWISWEEGAKVFEDFLLDYDWSLNAGNWMWLSASAFFYK-YYRV 411

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462
           ++P   GK+ D  G +IR ++PEL   P+++I+ P              +   YP  IVD
Sbjct: 412 YSPVAFGKKTDKDGLYIRKYVPELKKYPSEFIYEPWKAPKGVQKTAGCIIGEGYPNRIVD 471

Query: 463 HKKACHHTLNQYYAAKK 479
           H K     + +  AA K
Sbjct: 472 HDKVHKDNIQKMNAAYK 488


>gi|126726813|ref|ZP_01742652.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2150]
 gi|126703771|gb|EBA02865.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium
           HTCC2150]
          Length = 476

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 220/473 (46%), Gaps = 24/473 (5%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
            +LR++D++ L AA   S   VI VFIA    +    + A         L    + L + 
Sbjct: 21  RNLRLSDHQPLLAA-QQSGRPVIPVFIADDAFFA---LGAAPKWRFGLGLAAFSEQLEKI 76

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICK 134
           G      +     D    L     + +   + + R Y+ + + RD  ++  L +  ++ +
Sbjct: 77  GSKLLLRRG----DVQSVLLDLIHETQACAVLWERSYDPSSINRDTAIKMALGEEGIVAQ 132

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP----VTP 190
           SF  ++L+ P  I       YKV+TPF + L Q ++     ++         P    +  
Sbjct: 133 SFSGALLIEPWEIATKTGGFYKVFTPFWRNLHQMIIAPPASTVSNLVSPTDWPKGEDIKD 192

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
             + +        +     +GE+ A+    KF  +    Y ++RD PAI  TS+LS  L+
Sbjct: 193 WQLGQGMMRGLDVVGDHICVGEKAAVDRCEKFLSDNCNEYNDKRDFPAIDATSKLSENLA 252

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR  W+  +     +          ++ +L WR+F  HL    P +     +   
Sbjct: 253 YGEISPRLIWHLAQ----KVAHIDDVNVVPFIRQLAWRDFAWHLTYHTPHILDAN-WKAG 307

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            +   W      + AW++G TG  ++DAAMR+L   G MHNR RMI AS+L K L+VDWR
Sbjct: 308 WDTFPWITKGPEVLAWQRGQTGIELVDAAMRELYVTGRMHNRARMIAASYLTKHLMVDWR 367

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           +G+E+F   L+D DLA+N  GWQW A TG D+ PYFR+FNP  Q ++FD +  +   WL 
Sbjct: 368 VGQEWFGDTLVDMDLAANAMGWQWVAGTGPDASPYFRVFNPDGQAEKFDKERKYRDFWLN 427

Query: 431 ELNNVPTQYI-HAPHSWLDKNDLSLNY-PLPIVDHKKACHHTLNQYYAAKKQS 481
            + +   Q+   AP SW    ++ LN+ P P++         L  Y + KK  
Sbjct: 428 PVQDGARQFAKAAPKSW----NIDLNHRPKPLISLADGRARALTAYSSLKKSG 476


>gi|29467477|dbj|BAC67177.1| cryptochrome 2 [Armoracia rusticana]
          Length = 617

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 126/515 (24%), Positives = 209/515 (40%), Gaps = 59/515 (11%)

Query: 7   MSVH---LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M+ +   +VW R DLRI DN AL AA H     V  VFI  PE+  Q         ++  
Sbjct: 1   MTTNKKTIVWFRRDLRIEDNPALAAAAHEG--SVFPVFIWCPEEEGQFYPGRASRWWMKQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  + +SL   G      +  N   ++  +         TK+ +N  Y+   + RD  +
Sbjct: 59  SLAHLSQSLKALGSELTLIKTHN---TVSAILDCIRITGATKVVFNHLYDPVSLVRDHTV 115

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +++L    I  +SF+  +L  P  I     + +  ++ + K  +   +++ +   P   +
Sbjct: 116 KEKLVELGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIESVMLPPPWRLM 175

Query: 183 RLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            ++            +   +          +   +  G  NA  IL +F ++++  Y + 
Sbjct: 176 PISTAAEAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKN 235

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK--------------EEFVDLLIKPKS--- 276
                   TS LSPYL  G +S R+ +   +              +E  DL +K      
Sbjct: 236 SKKVVGNSTSLLSPYLHYGEISVRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLRE 295

Query: 277 --GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
             G +  ++ L+       +  F   +     F     + +W            GY    
Sbjct: 296 YLGIYVSISRLLTSNLCGVIFVFSLGMADVDKFQGLETRQDWLSVGGCRNERALGY---- 351

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
                       G MHNRLR+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+
Sbjct: 352 ------------GCMHNRLRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQY 399

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LD 448
            + +  D     R+ NP IQG ++DP+G +IR WLPEL  +PT++IH P           
Sbjct: 400 ISGSLPDGHELDRLDNPAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKAS 459

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
             +L  NY  PI+D   A           ++  ++
Sbjct: 460 GVELGTNYAKPILDIDTARELLTKAISRTREAQIM 494


>gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri]
          Length = 559

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 137/549 (24%), Positives = 200/549 (36%), Gaps = 76/549 (13%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            +  A    LVW R  LR+ DN AL     ++ A    VF+  P   +   + A +  F+
Sbjct: 6   TSAAAKGRTLVWFRKALRVHDNPALSRGTLHATA-CQPVFVLDPWFCQPSRVGANRMRFL 64

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L  +G                 L   C + RV  + +    E     RD 
Sbjct: 65  LQSLRDLDAQLRARGSSLLVLHGEPRV----VLPRACKKWRVDSVTWEHDIEPYAKIRDA 120

Query: 122 LLEKRLQ-HRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            +   L+   V C +     L     +L          Y  F K + +            
Sbjct: 121 AVRGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMGAPNAPIDAME 180

Query: 180 P------------AIRLTGPVTPSNIPRFFDYPFQAI--DPMFPI--GEQNALH------ 217
                           + G      IP   D  ++ +  D  FP   GE   L       
Sbjct: 181 KMPGSFASSDEETKALVQGVADAYGIPTLEDLGYEPLGDDEGFPGVGGETEGLRRLRLML 240

Query: 218 -------ILRKFCKEKVYYY-----------------VEQRDIPAIQGTSQ--------- 244
                     K        +                    R       TS          
Sbjct: 241 ARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDASTSGAEALMIPST 300

Query: 245 --LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
             LSPY+  G +SPR  ++ L   + +L  K      S + +L+WREFY  + A   +  
Sbjct: 301 TALSPYMKFGCVSPRVFYHELTAVYKELEGKHSKPPTSLMGQLMWREFYYLVAAGTKNFD 360

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +       +I W KD  L  AW+   TGFP IDAAM QL   GW+H+  R   A FL 
Sbjct: 361 KMEG-NAICRQIPWKKDRELFAAWENAQTGFPWIDAAMTQLRREGWLHHLARHAVACFLT 419

Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           + DL + W  G + F   L+D D A NNG W W  S       YFR+++P    K++D  
Sbjct: 420 RGDLFIHWEWGRDAFDRDLVDADWALNNGNWMW-LSCSAFFYQYFRVYSPIAFAKKYDKD 478

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT---LN 472
           G ++RH+LP L N+P++Y++ P              + ++YP PIVDH  A       + 
Sbjct: 479 GQYVRHYLPVLKNMPSKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHSAASKRCVDDIA 538

Query: 473 QYYAAKKQS 481
             YAA K +
Sbjct: 539 TAYAAHKDA 547


>gi|32477278|ref|NP_870272.1| DNA photolyase [Rhodopirellula baltica SH 1]
 gi|32447829|emb|CAD77347.1| DNA photolyase [Rhodopirellula baltica SH 1]
          Length = 526

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 129/497 (25%), Positives = 212/497 (42%), Gaps = 32/497 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFI 61
           M+  LVW RNDLR  D++    A      +  AV    P Q+             ++ F+
Sbjct: 39  MANALVWFRNDLRTIDHEPFLRASTAD--RCFAVHCIDPRQFETTELGFQRTGPFRARFL 96

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  ++  L   G                 L S      +  + ++ +    E    +
Sbjct: 97  IENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLA----IDAVHFHHEPRTEEADTAE 152

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +++   QH +         L+ P  +        +++T FRK + +          P+ 
Sbjct: 153 SVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIR 212

Query: 181 -AIRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFC--KEKVYYYV 231
               L   V   +IP                   F  G+  A   + ++   ++++  Y 
Sbjct: 213 IHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVYK 272

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           E R+ +     +S+ SP+L+ G LSPR   + ++    + +       +  + EL+WR++
Sbjct: 273 ETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVRRYEEERV--KNKSTYWMIFELLWRDY 330

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +R +   + +    +        ++W  D  L + W+ G TG+P++DA MR+L T G+M 
Sbjct: 331 FRWISRKHGATLF-RAGGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMS 389

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   ASFL K+L +DWR G  +F SQL+D D+ASN G W +AA  GND+   FR FN
Sbjct: 390 NRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARG-FRFFN 448

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
            T Q + +D QG + +HWLPEL ++    IH P     +        L   YP PIVD  
Sbjct: 449 ITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQEVGATLGKEYPHPIVDLF 508

Query: 465 KACHHTLNQYYAAKKQS 481
            +       Y  AK  S
Sbjct: 509 DSAKENETIYMRAKAAS 525


>gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
 gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
          Length = 527

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 129/496 (26%), Positives = 205/496 (41%), Gaps = 41/496 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG---------ISARQSH 59
           + L+W R  LR+ DN +L AACH S   V  VF+  P                +   +  
Sbjct: 1   MALLWFRKGLRLHDNPSLEAACHGS-RNVYPVFVLDPWFLAPDPRASSPGSARVGINRIQ 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  SL  + ++LS +G            + I+ +     + R+ KL +    E   + R
Sbjct: 60  FLLESLQDLDRNLSSRGSKLLLVHG----NPIQVIPELLDKWRIRKLCFEFDTEPYALDR 115

Query: 120 DKLLEKRLQHRVICKSFD-DSVLLPPGS-ILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           D  +++  + + I         +  P   I  +  +    +  F K L+           
Sbjct: 116 DAKIKEHAKDKGIELHCPVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPATKPIGNGPS 175

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY--YYVE 232
            +P       +    +P   +  +         F  GE  AL  L      + +   + +
Sbjct: 176 AIPPTGDLHGIKVVPVPTLEELGYADFHEDFSPFRGGETVALTRLEDSLANEKWVCEFEK 235

Query: 233 QRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            +  P       T+ LSPYL  G LS R  ++R+KE +        S   S   +L+WRE
Sbjct: 236 PKGDPTAFIKPATTVLSPYLKFGCLSSRLVYSRVKEVYSRAK-SFTSPPVSLEAQLLWRE 294

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+        +        P  ++I W  D  LL AW+ G TG+P IDAAM QL   GWM
Sbjct: 295 FFYTAAYATANFDKM-VGNPICKQIPWKDDDELLSAWRDGRTGYPWIDAAMTQLRKWGWM 353

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + D+ V W  G + F   L+D D + NNG W W +++   +  Y RI
Sbjct: 354 HHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAFFNQ-YHRI 412

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVD 462
           ++P    K++D QG +I+H+LPE       +I+ P           K  +  +YP P++D
Sbjct: 413 YSPITFAKKYDRQGNYIKHFLPE-------FIYEPWKAPAEIQRKAKCIIGKDYPTPVLD 465

Query: 463 HKKACHHTLNQYYAAK 478
           H  A      +  AA 
Sbjct: 466 HAAASKICRERMGAAY 481


>gi|254449817|ref|ZP_05063254.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
           antarcticus 238]
 gi|198264223|gb|EDY88493.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
           antarcticus 238]
          Length = 522

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 118/486 (24%), Positives = 197/486 (40%), Gaps = 29/486 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  +VW + DLRI D+  L AA    +A +I ++I  PE W+Q   S R  HFI+  L  
Sbjct: 15  APRIVWFKRDLRINDHAPLLAASRT-NAPIIPLYIVEPEYWQQPFASRRHWHFIHDGLCD 73

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126
           +   L++ G            DS + +    L   V+ ++ + +   +    RD  ++K 
Sbjct: 74  LDSGLAELGQHLVVK----VGDSCDVIKQLHLDHDVSHVYAHEETGNLWTYNRDIAVQKL 129

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            Q+  I       +   P + +   L+    ++  R A +   +     +L       + 
Sbjct: 130 CQNHGIA------LHEAPTNGVVRRLRSRDDWSKIRNARMAEKILPKPNALNSFPPCSSD 183

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244
            +   N P F + P   +      G + A+  LR F   +   Y+     P       S+
Sbjct: 184 TLPDKNDPIFGNVPIGKVQ---KGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSR 240

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG----AFSWLNELIWREFYRHLMAFYPS 300
           LS +L+ G LS R+    + +    L             ++ + L WR  +   +   P 
Sbjct: 241 LSAHLAWGTLSVREVAQSIVKRHAQLSPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPE 300

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +        +        +    QAW  G TG+P +DA MR L   GW+  R+R +  SF
Sbjct: 301 IETHCMHPAFEGLRVGEHNDLHFQAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSF 360

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
               L +DWR+  E+      D +   +    Q    +G   +   R++NP  Q    DP
Sbjct: 361 ASYQLWLDWRVTGEHLARLFTDFEPGIHYSQLQMQ--SGVTGINTMRVYNPIKQSMEHDP 418

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +GTFIR W+PEL +VP ++IH P  W           L  +YP P+VD   +      Q 
Sbjct: 419 KGTFIRKWVPELKSVPDEFIHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQI 478

Query: 475 YAAKKQ 480
            A ++ 
Sbjct: 479 SAIRQN 484


>gi|329941848|ref|ZP_08291113.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus
           M045]
 gi|329299565|gb|EGG43465.1| deoxyribodipyrimidine photolyase [Streptomyces griseoaurantiacus
           M045]
          Length = 468

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 213/488 (43%), Gaps = 37/488 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V    DLR+ D+  L AA   + A V+ +F+              +  F+   L 
Sbjct: 1   MHTSVVLFTADLRLHDHPPLRAALDRASA-VVPLFVRDRAVDAAGFAVPNRLAFLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G            D +E +     +    ++        +  RR+  L   
Sbjct: 60  DLDAGLRERGGRLVVRSG----DLVEEVCRVAAEADAGEVHMASDVSAHAHRREDRLRTA 115

Query: 127 LQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIR 183
           L+         D+V  +  PGS+       + V+TP+ +   +   ++ L     VP   
Sbjct: 116 LEAVGRGLVVHDTVTTVRAPGSVTPGGRDHFAVFTPYFRRWSEQRTRSVLDAPRRVPVPE 175

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY------------YYV 231
             G   P +     D        +   GE+     L  + +                 Y 
Sbjct: 176 GIGSEEPPDRRELSDL----SPGLARGGEREGRARLAAWLRGGSGDGKGAGVVGDVGEYE 231

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           ++ D  A   TS+LSP+L  G LSP +          +       GA +++ +L WR+F+
Sbjct: 232 DRHDDLAGDATSRLSPHLHFGTLSPVEVV-------REAGGLGGPGAEAFVRQLAWRDFH 284

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R ++A  P+                      +QAW++G TG+P++DAAMRQL   GWMHN
Sbjct: 285 RQVLAARPAAAHEDYRTRHDRWRTERAAREEVQAWREGRTGYPVVDAAMRQLRHEGWMHN 344

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R++TASFL K L VDWR+G  +F+  L+DGDLA+N   WQW A TG DS P  R+ NP
Sbjct: 345 RGRLLTASFLAKTLYVDWRVGARHFLDLLVDGDLANNQMNWQWVAGTGTDSRP-NRVLNP 403

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHT 470
            +QG+RFDP+G ++R W+PEL  VP   +H P        + +  Y   +VD  +     
Sbjct: 404 VVQGRRFDPEGAYVRRWVPELAEVPGAGVHEPWKLRGAAREAARGYAERVVDLAEG---- 459

Query: 471 LNQYYAAK 478
           L ++  A+
Sbjct: 460 LERFRRAR 467


>gi|282862663|ref|ZP_06271724.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. ACTE]
 gi|282562349|gb|EFB67890.1| Deoxyribodipyrimidine photo-lyase [Streptomyces sp. ACTE]
          Length = 459

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 131/479 (27%), Positives = 226/479 (47%), Gaps = 30/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +V   +DLR+ D+  L+AA  ++D +V+ +F+      R    +  +  F+   L 
Sbjct: 1   MSVAVVLFTSDLRLHDHPPLHAALASAD-EVVPLFVRDDAVARAGFCAPNREAFLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G            + ++ +     +    ++        +  RR++ L + 
Sbjct: 60  DLDAGLRDRGGRLVIRSG----EIVDEVRRVVTETGAGEVHLAADVSGHAQRREERLREA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHA--LQMYKVYTPFRKALIQNLVQAD---LRSLPV 179
           L          D+V+  + PG+++        + V+TP+ ++  Q  ++      R++ +
Sbjct: 116 LASAGCRLRVHDAVVTAVAPGAVVPSGSGKDHFAVFTPYFRSWSQVGLRTPFGAPRAVRM 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           P    + PV   +                      A         + +  Y ++ D  A 
Sbjct: 176 PDGPASEPVPERSRVSGVSRGVAEGGEREGRRRMTAWRR------QGLGRYEDRHDDLAG 229

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LSP+L  G LSP +  +R +           +GA +++ +L WR+F+  ++A  P
Sbjct: 230 DATSRLSPHLHFGTLSPTELIHRAR-------SAGGAGAEAFVRQLCWRDFHHQVLAARP 282

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +                   +  ++AWK+G TG+P++DAAMRQL   GWMHNR R++TAS
Sbjct: 283 AASHADYRTRDDRWRTERTAAGDIEAWKEGRTGYPLVDAAMRQLRHEGWMHNRGRLLTAS 342

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK L VDWRIG  +F+  L+DGD+A+N   WQW A TG DS P  R+ NP +Q KR+D
Sbjct: 343 FLVKTLYVDWRIGARHFLELLVDGDIANNQLNWQWMAGTGTDSRP-NRVLNPVVQAKRYD 401

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
             G ++R W+PEL  +    +H P     +   +L+YP P++D  +     L ++  A+
Sbjct: 402 TDGAYVRRWVPELEKLGAPAVHEPWRLTGRERAALDYPEPLLDLSEG----LARFKDAR 456


>gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori]
 gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori]
 gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori]
          Length = 536

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 110/500 (22%), Positives = 187/500 (37%), Gaps = 36/500 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R+ LR+ DN +L++A   +      +FI   E      +   +  ++  +L  + 
Sbjct: 5   SVLWFRHGLRLHDNPSLHSALEETSGPFFPIFIFDGETAGTKVVGYNRMRYLLEALDDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K   + G      +                +  + KL + +  E     RD+ ++   + 
Sbjct: 65  KQFKKYGGRLLLVKGKPS----AVFRRLWEEFGIRKLCFEQDCEPVWRPRDESVKTACRE 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V C+      L  P +++     +  +        +  +              +    
Sbjct: 121 IGVTCREHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVDNAKLRGIKFGT 180

Query: 189 TPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVY----- 228
            P      F    +  +P                +  GE  AL  ++     +       
Sbjct: 181 LPLCFYEEFTVYDKVPNPEDLGVFLENEDIRMIRWVGGETAALKQMQHRLAVEYETFCRG 240

Query: 229 YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y+     P + G    LSP L  G LS R+ +  L++ F  +             +LIW
Sbjct: 241 SYLPTHGSPDLLGPPISLSPALRFGCLSVRKFYWSLQDLFQQVHQGSLCSTQYITGQLIW 300

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTI 346
           RE++  +    P         P    I W       L+ W  G TGFP +DAAMRQL   
Sbjct: 301 REYFYTMSVNNPHYGQMTD-NPICLDIPWKSPEGDELERWASGRTGFPFVDAAMRQLRLE 359

Query: 347 GWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VP 404
           GW+H+ +R   ASFL +  L + W  G  +F+  LLD D +   G W W +S+  ++ + 
Sbjct: 360 GWLHHAVRNTVASFLTRGTLWLSWEHGLAHFLKYLLDADWSVCAGNWMWVSSSAFEALLD 419

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458
                 P   G+R DP G ++R ++PEL  VPT+YI+ P              +  +YP 
Sbjct: 420 SGECACPVRLGQRLDPSGEYVRRYVPELARVPTEYIYEPWKAPLDVQERANCIIGKDYPA 479

Query: 459 PIVDHKKACHHTLNQYYAAK 478
           P+V+H  A     N     K
Sbjct: 480 PVVNHIVAAQRNRNAMEDTK 499


>gi|302557422|ref|ZP_07309764.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000]
 gi|302475040|gb|EFL38133.1| deoxyribodipyrimidine photolyase [Streptomyces griseoflavus Tu4000]
          Length = 457

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 134/477 (28%), Positives = 230/477 (48%), Gaps = 24/477 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +V   +DLR+ D+  L+AA   +D +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MTVAVVLFTSDLRLHDHPPLHAALRAAD-EVVPLFVLDPGIHAAGFDAPNRRAFLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++                  + +   +    ++           RR++ L +R
Sbjct: 60  DLDASLRRR----GGRLVVRAGPVAGEVCAVAAECGAAEVHMAAGVTAYAHRREERLRER 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L    +     D+V+  + PG++       + V+TP+ +   +  ++  L +    A+R+
Sbjct: 116 LGDGGVALRVHDTVVTAVAPGAVTPSGSDHFAVFTPYFRRWDRERLRKPLPAP--RAVRV 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              V    +P   D        + P GE+       ++  + +  Y +  D  A   TS+
Sbjct: 174 PDGVRGRPVPERADVS-GTSPGVPPGGEKAGRDRFSRWLGDGLSRYEDLHDDLAGDATSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LSP +  +R +            G  +++ +L WR+F+  ++A  P    G
Sbjct: 233 LSPYLHFGALSPVELVHRAR-------GHGGPGGDAFVRQLCWRDFHHQVLAARPEASAG 285

Query: 305 KPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
             +    +     +D+   + AW++G TG+P++DAAMRQL   GWMHNR R++ ASFL K
Sbjct: 286 -DYRTRHDHWRGEEDAADDIAAWREGRTGYPVVDAAMRQLRHEGWMHNRARLLVASFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L VDWRIG  +F+  L+DGD+ +N   WQW A TG D+ P+ R+ NP +Q KRFDP+G 
Sbjct: 345 TLYVDWRIGARHFLDLLVDGDVVNNQLNWQWVAGTGTDTRPH-RVLNPLVQAKRFDPEGA 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           ++R W+PEL +V  + +H P    +     L YP P++D        L ++  A+ +
Sbjct: 404 YVRRWVPELADVDGRAVHEPWRLPEDRRAGLGYPAPLIDLADG----LARFKHARGR 456


>gi|315636258|ref|ZP_07891510.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22]
 gi|315479467|gb|EFU70148.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri JV22]
          Length = 450

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 147/469 (31%), Positives = 231/469 (49%), Gaps = 25/469 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R DLRI DN+ L  A      +V+ +FI      +      ++  FIY S+ +++
Sbjct: 3   QILWFRRDLRIIDNEILANA----KGEVLPIFIFDKNILQNLPKDDKRVTFIYKSVYKLK 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L   G+         FD           +    ++  +  ++    +RD+ +EK    
Sbjct: 59  EDLKSIGLDLAI----FFDTPKNVFTKLKKE-NFDEILVSVDFDNYAKKRDEEVEKI--- 110

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  + F DS L+ P  IL    + YKV+TPF   L        +    +          
Sbjct: 111 -IPLRRFLDSYLIDPKIILKSDQKPYKVFTPFYNCLEPLHQSNHIEEFKISTNIKKINYD 169

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
               P   D  F  I+   P     +   L     +K+  Y + RD   +   S LS +L
Sbjct: 170 YDFFPTLQDLGF--IEQKLPDFLYKSADELITIFSKKIDNYQKNRDFFHLDAGSNLSVHL 227

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G++S +  +N++K+        PK     ++ ELIWREFY +++  +P          
Sbjct: 228 RFGLISAKIVFNKIKKLQA-----PKKEIDFFIRELIWREFYNYILFHFPKSQFENLNGI 282

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
              K+ WN++    + W +G TG PIIDA+M+ LN  G MHNRLRMI AS+LVK+LL+DW
Sbjct: 283 ---KVNWNENEEDFKKWCEGNTGVPIIDASMKHLNNTGLMHNRLRMIVASYLVKNLLIDW 339

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + GEEYF  +LLD + +SN G WQWAASTG D+VPYFR+FNP +Q K+FD +  FI+  L
Sbjct: 340 KKGEEYFALKLLDYEASSNIGSWQWAASTGVDAVPYFRVFNPYLQSKKFDSEAIFIKSVL 399

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +L ++PT+ IH  +   +  ++ L+YP  IV    +    + ++  A 
Sbjct: 400 KDLKDIPTKQIHTENGVQE--NIFLDYPKQIVGINYSRDRAILEFKRAN 446


>gi|224051116|ref|XP_002198900.1| PREDICTED: cryptochrome 2 (photolyase-like), partial [Taeniopygia
           guttata]
          Length = 540

 Score =  326 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 109/464 (23%), Positives = 178/464 (38%), Gaps = 30/464 (6%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99
           ++I  P       +   +  F+  SL  +  SL +        +    D           
Sbjct: 1   IYILDPWFAATSAVGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTD----VFPRLFK 56

Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHAL-QMYKV 157
           +  VT+L +    E     RD  + K  +   V     +   L     I+     +    
Sbjct: 57  EWGVTRLTFEYDSEPFGKERDAAIVKLAKEAGVEVVIENSHTLYDLDRIIELNGHKPPLT 116

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP-------RFFDYPFQA---IDPM 207
           Y  F+  + +  +     S  +     T  V                +  F        +
Sbjct: 117 YKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAV 176

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRL 263
           +  GE  AL  L K  + K +    +R            + LSPYL  G LS R  + RL
Sbjct: 177 WQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRL 236

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            E +  +  +  +   S   +L+WREF+       P     +   P   +I W+++   L
Sbjct: 237 WELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEG-NPICIQIPWDRNPEAL 294

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382
             W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G   F   LLD
Sbjct: 295 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLD 354

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D + N G W W  S       +F  + P   G+R DP G +++ +LP+L   P++YI+ 
Sbjct: 355 ADFSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYE 413

Query: 443 PHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           P +  +      K  + ++YP P+V+H +     + +     +Q
Sbjct: 414 PWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 457


>gi|152967497|ref|YP_001363281.1| deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans
           SRS30216]
 gi|151362014|gb|ABS05017.1| Deoxyribodipyrimidine photo-lyase [Kineococcus radiotolerans
           SRS30216]
          Length = 450

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 143/471 (30%), Positives = 217/471 (46%), Gaps = 24/471 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++D+         +D  V+ +F+  P  W        +  ++  SL  +
Sbjct: 2   TSVLWFRRDLRLSDHP--ALLAAAADGDVLPLFVIDPALWG--PSGDVRRTYLLRSLRSL 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L    +V          D    +D    +   +++           RRD  + + L 
Sbjct: 58  DAALGGALVV-------ERGDPAVVVDRVAARIGASRVHVTADAGPLGRRRDDAVGRALA 110

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                         + PG++   +   ++V+TPF +A   +   A   S    A+R  G 
Sbjct: 111 AGGRELVRTGTPYAIGPGTLRTGSGSPFQVFTPFSRAWRAHGWPAPADSP--GAVRWVGD 168

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               +   + D P      +   GE  A     +F    +  Y   RD P   GTSQLS 
Sbjct: 169 GEGVDGGHWPDEPDLGGLTLPEAGEDAAHERWHRFLDHALADYDGDRDRPDRDGTSQLSH 228

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
            L  G L PR     L+        +   GA ++  EL WR+FY  ++   P       +
Sbjct: 229 ALKWGELHPRTLLAALR-------GQSSKGAETYATELCWRDFYADVLWHRPDSAREY-Y 280

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P    + + +     +AW +G TGFPI+DA MRQ+  +GW+HNR+RMITASFLVKDL V
Sbjct: 281 KPQLAGLRYAEPGEQFRAWAEGRTGFPIVDAGMRQMRAVGWVHNRVRMITASFLVKDLHV 340

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           +W+ G   FM  L D DLASN  GWQW A +G D+ P+FR+FNP  QG+RFDP G ++R 
Sbjct: 341 EWQHGGREFMHWLRDADLASNMHGWQWVAGSGTDASPFFRVFNPVTQGQRFDPDGDYVRR 400

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           ++PEL ++P + +H P  W   +  +  YP  IVDH       L +Y   +
Sbjct: 401 FVPELRHLPGKSVHTP--WEAADGYAHGYPERIVDHAHEREVALAEYARVR 449


>gi|256789597|ref|ZP_05528028.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
 gi|289773486|ref|ZP_06532864.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
 gi|289703685|gb|EFD71114.1| deoxyribodipyrimidine photolyase [Streptomyces lividans TK24]
          Length = 458

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 138/478 (28%), Positives = 221/478 (46%), Gaps = 25/478 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +V    DLR+ D+  L AA   SDA V+ +F+           +  +   +   L 
Sbjct: 1   MATSVVLFTRDLRLHDHPPLRAALDRSDA-VVPLFVRDRAVGAAGFAAPNRLALLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G            D +E + +   +    ++        +  RR++LL   
Sbjct: 60  DLDSGLRDRGGRLVVRSG----DLVEEVCAVAGEAEADEVHLAADVSAHAHRREELLRSA 115

Query: 127 LQHRVICKSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L  R       D  + +L PGS+   +   + V+TP+ +   +  V+  L +     +R+
Sbjct: 116 LSARGCRLHVHDAVTTVLAPGSVTPASSDHFAVFTPYFRRWSERAVREPLAAP--RRVRV 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              V    +P   D     + P  P  GE++A   L  + +  +  Y +  D  A   TS
Sbjct: 174 PDGVGSEPLPARGDL--TGLSPGLPTGGERDARKRLTAWLRGGIAGYADHHDDLAGDATS 231

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP L +G LSP +  +R +            GA +++ +L WR+F+  ++A  P    
Sbjct: 232 RLSPDLHLGALSPVELVHRARRA-------GGPGAEAFVRQLAWRDFHHQVLAARPHASA 284

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                                AW+ G TG+P++DAAMRQL   GWMHNR R++ ASFL K
Sbjct: 285 ADYRTRHDRWRTGAAAEADAAAWRDGRTGYPVVDAAMRQLRHEGWMHNRGRLLVASFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L VDWR+G  +F+  L+DGD+A+N   WQW A TG D+ P+ R+ NPT Q +RFDP G 
Sbjct: 345 TLYVDWRVGARHFLELLVDGDVANNQLNWQWVAGTGTDTRPH-RVLNPTTQARRFDPGGA 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           ++R W+PEL  +  + +H P             YP PIVD  +     L+++  A+ +
Sbjct: 404 YVRRWVPELAGLAGRSVHEPWRLARAARAAYDAYPDPIVDLSEG----LDRFRRARGR 457


>gi|254501390|ref|ZP_05113541.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
           DFL-11]
 gi|222437461|gb|EEE44140.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
           DFL-11]
          Length = 519

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 109/487 (22%), Positives = 188/487 (38%), Gaps = 33/487 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +  +H+VW + DLR+ D++ L  A       V+ +++  P+ W Q  +SAR   F+   L
Sbjct: 2   SEPIHIVWFKKDLRVFDHEPLKRASL--QGPVLPLYVIEPDLWDQPDMSARHYAFLSECL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124
             + + LS+ G        S  D     L     + R+  L+ + +       +RDK + 
Sbjct: 60  QDLDQELSRLGKPLLLRTGSVTD----VLTYISERYRIAGLWSHEETGNGWTYQRDKAVA 115

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              +   +  +           ++            + + + +  +         PA+R 
Sbjct: 116 AWCRANSVPWTECRQT-----GVIRRLNSRNGWAGQWDRFMAEQPID-------PPALRP 163

Query: 185 TGPVTPSNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240
              +T   +P+  D              G   AL  L  F   +   Y      P  A +
Sbjct: 164 LSGLTSGPLPKAADLGLAADPCPDRQIGGRVAALETLESFLFTRGKPYRAAMATPVKAFE 223

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-------ELIWREFYRH 293
             S++SPYL+ G +S R+          +L      G  +W          L W   +  
Sbjct: 224 ACSRMSPYLTFGTISMREVAQATWARQAELKRSDFKGRSTWQGAMRSFSGRLHWHCHFMQ 283

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +   P +        +        D+  LQAW++G TG P +DA MR L   GWM+ R+
Sbjct: 284 KLEDEPRLEFENLHRAYDGLRPSTPDAERLQAWQRGETGLPFVDACMRALTATGWMNFRM 343

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R +  +     L +DWR    +      D +   +    Q    +G   +   RI+NP  
Sbjct: 344 RAMLTAVASYHLWLDWRQPGLHLARLFTDYEPGIHWSQIQMQ--SGTTGINTIRIYNPVK 401

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLN 472
           QGK  DP G F++ W+PEL ++    I+ P    +    L   YP P+VD+  A     +
Sbjct: 402 QGKDQDPDGIFVKRWVPELKDIDPALINEPWKAENAGKVLGKTYPFPVVDYLSAAKEARD 461

Query: 473 QYYAAKK 479
           + +A +K
Sbjct: 462 KVWAVRK 468


>gi|308178900|ref|YP_003918306.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117]
 gi|307746363|emb|CBT77335.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117]
          Length = 464

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 141/488 (28%), Positives = 215/488 (44%), Gaps = 45/488 (9%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
            + + + L+W R+DLR  DN AL +A       VIAVFI   +      +      +++ 
Sbjct: 3   QSPLPLQLMWFRDDLRTADNPALSSALAAG--PVIAVFILDQQSPGIRPLGGAAKWWLHH 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            L  ++ +L   GI     +      +   +     Q     + +NR+Y   E   D   
Sbjct: 61  GLKSLRAALEDLGIPLVLRKGP----ADSIMTELARQTNAQAVHWNRRYGQPERAVDTRA 116

Query: 124 EKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPA 181
           +  L+      +S+  ++L  P  +L      YKV+TPF  AL  + ++  L   L    
Sbjct: 117 KTALRGLGREARSYPGTLLHEPWELLTKKGTGYKVFTPFYNALGDSAIRPPLPAPLGQDT 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
               G      +      P  A     +   +  GE  A H L    +     Y E  D 
Sbjct: 177 FSAAGIPNGLELEDLELLPATAQWTAGLAAQWEPGEAPARHRLENVLESIAQDYPEHHDR 236

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P + GTS LSP L  G L   + W+ L     +   K  +GA +   +L WR+F  HL  
Sbjct: 237 PDLDGTSALSPALRWGHLGAHEMWDALGRLAAE-NPKAGAGATAMRRQLAWRDFCWHLYY 295

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSH------LLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            +P +   +      +  +W            +Q W++G TGF ++DA M+QL   GWMH
Sbjct: 296 HHPQLP-DRNLRTDFDHFDWVWPEQDQQVASYVQLWQKGRTGFGLVDAGMQQLWQTGWMH 354

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR+RM+ AS LVK+L V W++GE +F   L+D D+ASN   WQW A +G D+ PYFR+FN
Sbjct: 355 NRVRMVAASLLVKNLQVHWKVGERWFWDTLVDADIASNTANWQWVAGSGADAAPYFRVFN 414

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHT 470
           P +Q K+FDPQG+++  + P                            PIVD K++    
Sbjct: 415 PELQAKKFDPQGSYVSQFAPLAA------------------------QPIVDLKQSRLDA 450

Query: 471 LNQYYAAK 478
           L+ Y   K
Sbjct: 451 LDAYDQMK 458


>gi|326387639|ref|ZP_08209245.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207685|gb|EGD58496.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 455

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 214/464 (46%), Gaps = 38/464 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  LVWLR DLR+            ++  V+ V++   E  R   +      +++ SL  
Sbjct: 3   APVLVWLRQDLRLA--DQAAFLAAAAEGPVVPVYVLDDETPRHRRMGGASRWWLHHSLKS 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + + L Q+G      +      +   L     +    ++      E      ++ + K L
Sbjct: 61  LDEGLRQRGSRLILRRGP----AHRELAELAREVGARRVHALAHVEPWWRNAERAVAKTL 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                    +   L PPG++L  +   YK+YTPF +AL + +        P    R+  P
Sbjct: 117 D----LVLHEGQYLAPPGTVLTGSGLPYKIYTPFWRALSERMPTHRPVPAPG---RIDAP 169

Query: 188 VTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            +  +  R  D+      P         +  GE  A   L  F   K   Y E R+ P++
Sbjct: 170 ASWPDGDRLDDWTLVPTRPDWAAGFRTRWTPGEVGAHERLDMFI-GKASRYGEWRNFPSV 228

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +GTS+LSP+L  G +S    W+ + +              ++L E+ WR++  +++   P
Sbjct: 229 EGTSRLSPHLHFGEISAATVWHSVAD--------AGGSVSTFLGEVGWRDYAANVLLQMP 280

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               G+      E+  W +D+  L+AW+ G TG+PI+DA MR+L   GWMHNR+RMI AS
Sbjct: 281 DYA-GRSAREAFERFPWREDADDLRAWQTGMTGYPIVDAGMRELWATGWMHNRVRMIAAS 339

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK LL+DWR GE +F   L+D D A N   WQW A TG DS  + RI  P  Q  +FD
Sbjct: 340 FLVKHLLIDWREGERWFWDTLVDADHAINAVNWQWTAGTGVDSNMFVRIMAPLTQSPKFD 399

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
             G +IR W+PEL++V    IH P            YP P++DH
Sbjct: 400 AAG-YIRRWVPELSDVADADIHDPR------IRPRGYPAPLIDH 436


>gi|296128975|ref|YP_003636225.1| Deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM
           20109]
 gi|296020790|gb|ADG74026.1| Deoxyribodipyrimidine photo-lyase [Cellulomonas flavigena DSM
           20109]
          Length = 457

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 141/471 (29%), Positives = 214/471 (45%), Gaps = 29/471 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             + W R DLR++D+ AL AA   +     +V+A+++  P  WR  G    +  ++ ASL
Sbjct: 2   PTICWFRRDLRLSDHPALVAAVAEARAAGDEVVALYVVDPALWRAAGTP--RLAYLAASL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             + ++   + +V           +   + +   Q   + +  +   E    RRD+ +E 
Sbjct: 60  RSLDEATGGRLVVRHGR-------ADRVVPAVARQVGASSVHVSAATEPYGRRRDEAVEA 112

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIRL 184
            L   V          + PG +       Y+V+TPFR A + +   +   R   VP   L
Sbjct: 113 ALD--VPLVRTGCPYAVAPGRLRTGQGGPYQVFTPFRGAWLDHGWHEPAPRPRDVPWAAL 170

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                P         P        P GE+ A      F +E +  Y   R+ P +  TS 
Sbjct: 171 ASDGLPDAPATDVTLP--------PAGERAARERWHAFVREDLAGYDVDRNRPDLDVTSW 222

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +S +L  G + PR     L +              ++ +EL WREF+  ++  +P+    
Sbjct: 223 MSVHLKHGEIHPRTLLADLADAGRGARGPLADSVATYRSELAWREFHADVLWHHPAAART 282

Query: 305 KPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                   +  W           AW  G TG+P++DA MRQL   GW+HNR+RM+ ASFL
Sbjct: 283 -SLREVVPQDAWATGPPADRAFAAWTDGRTGYPLVDAGMRQLRAQGWVHNRVRMVVASFL 341

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDL + W+ G  +FM  L+DGD+  N   WQW A TG D+ PYFR+FNP  Q ++FDP 
Sbjct: 342 VKDLHLPWQRGAAHFMEWLVDGDVPQNQLNWQWVAGTGRDAAPYFRVFNPVTQARKFDPD 401

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
           GT++R W+PEL +VP + +H P  W     L   YP  +VDH       L 
Sbjct: 402 GTYVRRWVPELRDVPDRAVHEP--WTLPGGLPAGYPERVVDHAHEREVALA 450


>gi|167521638|ref|XP_001745157.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776115|gb|EDQ89735.1| predicted protein [Monosiga brevicollis MX1]
          Length = 525

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 130/492 (26%), Positives = 209/492 (42%), Gaps = 40/492 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------------ 48
           M         +VW RNDLR+ DN+ L  A   S   V+ V+     Q+            
Sbjct: 1   MAKAGNPRPVVVWFRNDLRVHDNEVLLQAAKASHNHVVPVYCFDIRQYSLVITHRSRRCG 60

Query: 49  RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
           +       ++ F+  S+  ++  L + G               E +     Q   T++F 
Sbjct: 61  QFPKCGRPRARFLIESVDDLRTRLQELGSGLVVRTGLPE----EEVARVAAQVGATQVFA 116

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN---HALQMYKVYTPFRKAL 165
           +++    EV  +  L+++L+  V       +V L     L+       +  V+T FRK +
Sbjct: 117 HQEVCSEEVAAEHRLKRQLE--VPLSLHWGAVTLCHLDDLDFGPRCKHLPSVFTQFRKRV 174

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHIL 219
             ++    + + P     L   +   +IP   D       P +     F  GE  A   L
Sbjct: 175 EADMHVRPVVAAPARLAPLPSDLELGSIPTVEDLCPGQHEPDERAVLPFKGGETAARARL 234

Query: 220 RKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
           + +  E      Y + R+ +     +S+ SP+L+ G L+ R  ++ +K    +      +
Sbjct: 235 QYYLWESNLLASYKDTRNGLVGGDYSSKFSPWLAHGNLTARWIYHEVKRYEQERT--ENT 292

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
             +  + EL+WR+++R +   + +    KP     + + W       +AW+ G TGFP I
Sbjct: 293 STYWLIFELLWRDYFRFVALQHGTAIF-KPGGVQHKDVPWRHSPADFEAWQNGQTGFPFI 351

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DA MR+L   G+M NR R   ASFL KDL +DWR+G E+F + LLD D  SN G W +AA
Sbjct: 352 DANMRELAKTGFMSNRGRQNVASFLTKDLQIDWRLGAEWFETLLLDHDPCSNYGNWNYAA 411

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------ 450
             GND     R FN   Q K +DP   ++  W+PEL  +     H P     +       
Sbjct: 412 GVGNDPRQ-GRHFNVIKQAKTYDPTAEYVHLWVPELRGLDAPQAHVPFKLSSEELAQANI 470

Query: 451 DLSLNYPLPIVD 462
            L   YP P+VD
Sbjct: 471 QLGSTYPRPVVD 482


>gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi]
          Length = 525

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 111/501 (22%), Positives = 192/501 (38%), Gaps = 36/501 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R+ LR+ DN +L+AA  +       +F+   E      +   +  ++  +L  + 
Sbjct: 5   SVLWFRHGLRLHDNPSLHAALEDRSVPFFPIFVFDGETAGTKLVGYNRMRYLLEALEDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
               + G      +    D           +  + KL + +  E     RD  ++   + 
Sbjct: 65  NQFKKYGGKLIMLKGKPSD----VFRRLWEEFGIRKLCFEQDCEPLWRARDDGVKSACRE 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V C+ +    L  P +++     +  +        +  +         V    +T   
Sbjct: 121 IGVACREYVSHTLWEPDTVIRANGGIPPLTYQMFLHTVTIVGDPPRPVPDVDMSGITFGT 180

Query: 189 TPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVY----- 228
            P    + F    +   P                +  GE  AL  +++    +       
Sbjct: 181 LPDCFYQEFTVFDKTPKPEDLGVFLENEDIRMIRWVGGETAALKQMQQRLAVEHETFRKG 240

Query: 229 YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y+     P + G    LSP L  G LS R  +  +++ F  +     S A     +LIW
Sbjct: 241 SYLPTHGSPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLSSAHFITGQLIW 300

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTI 346
           RE++  +    P+        P    I W       LQ W +G TGFP IDAAMRQL   
Sbjct: 301 REYFYTMSVNNPNYG-QMADNPICLDIPWKHPEGDELQRWIEGRTGFPFIDAAMRQLRAE 359

Query: 347 GWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VP 404
           GW+H+ +R   ASFL +  L + W  G  +F+  LLD D +   G W W +S+  ++ + 
Sbjct: 360 GWLHHAVRNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLD 419

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPL 458
                 P   G+R DP G ++R ++PE+  +P  YI+ P              +  +YP 
Sbjct: 420 SGECACPVRLGQRLDPSGEYVRRYVPEIARMPVDYIYEPWKAPLDVQTRASCIIGKHYPA 479

Query: 459 PIVDHKKACHHTLNQYYAAKK 479
           P+V+H  A     N     ++
Sbjct: 480 PLVNHIVAAQRNRNAMKELRQ 500


>gi|295840351|ref|ZP_06827284.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
 gi|295827937|gb|EFG65724.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
          Length = 455

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 213/470 (45%), Gaps = 22/470 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +  ++ F+   L 
Sbjct: 1   MKASIVLYTSDLRLHDHPPLRAATREAE-EVVPLFVRDPGIEKAGFTAPNRAAFLADCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G            D +  +          ++            R   L   
Sbjct: 60  GLDAGLRERGGRLVVR----AGDPVRIVRELVGSTGAERVHVAAGLSAYARGRADRLRTA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+         ++V+  L PG ++      + V+TP+ +      ++  L +    A+ +
Sbjct: 116 LEGTGAELVEHEAVVTALQPGELVPGGKDHFAVFTPYHRQWSAQPLREPLAAP--RALTV 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              V    +PR  D        +   GE     +L  + ++ V  Y E  D  A  GTS+
Sbjct: 174 PSGVRSDAVPRRADVE-GVSPGLAEGGEAAGRALLAAWRRDGVSRYEEMHDDLAGDGTSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LS  +C +R++               +++ +L WR+F+  ++A  P+    
Sbjct: 233 LSPYLHFGALSAAECVHRVRAAGGAGAD-------AFVRQLCWRDFHHQVLAARPAAA-H 284

Query: 305 KPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           K + P  +             AW++G TG+P++DAAMRQL   GWMHNR R++ ASFL K
Sbjct: 285 KDYRPRGDHWRTGRSAEREAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L +DWR+G  +F+  L DGDLA+N   WQW A TG D+ P  R+ NP  Q +++DP+G 
Sbjct: 345 TLYLDWRLGAAHFLDLLADGDLANNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDPEGD 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           ++R W+PEL  +  + +H P  W         YP P+VD  +        
Sbjct: 404 YVRRWVPELRGIEGRAVHEP--WKRPAGEREGYPRPLVDLAEGRDRFRRA 451


>gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299]
 gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299]
          Length = 566

 Score =  325 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 143/550 (26%), Positives = 205/550 (37%), Gaps = 82/550 (14%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A    ++W R  LR+ DN AL  AC  + A V  VF+  P   +   + A +  F+  SL
Sbjct: 2   AAKRTILWFRKGLRVHDNPALVKACEGASA-VQPVFVLDPWFIKPERVGANRLRFLLESL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL  +G                 L+++    R  +L Y    E    +RD  + +
Sbjct: 61  TDLDASLRARGSSLLVLHGDPARVIPAALEAW----RCDRLCYEFDTEPYAQKRDASVNE 116

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNH--ALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
             +   V   +     L     +L      +    Y  F K          +        
Sbjct: 117 AARALGVEVHAPVSHTLWDLDRLLAKCPRGEPPTAYASFLKIAHGVGPVPPVAPDVPSIT 176

Query: 183 RLTGP----------------VTPSNIPRFFDYPFQAIDPM--FP--IGEQNALHILRKF 222
            L+                  VT S IP      ++ I     FP   GE   L  LRK 
Sbjct: 177 PLSDGDALSDGKDLVDALRDVVTGSGIPSLERLGYEPIKAGEGFPARGGETEGLARLRKM 236

Query: 223 CKEKVY--YYVEQRDIPA------------------------------------------ 238
                Y   + + +  P                                           
Sbjct: 237 LARTTYIAEFKKPQTNPTELWTPVLGKEGKVKGAPPANPFEAAKKSSKEPKSTQLAEAFM 296

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
              T+ LSPYL  G +SPR  W+ L+    V+L  K      S   +L+WREFY      
Sbjct: 297 APATTALSPYLKFGCVSPRTFWHELRAVLDVELGGKHSKPPESLEGQLLWREFYYLAGYG 356

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P+            +I W  D   L AW++  TGFP IDA M QL   GWMH+  R   
Sbjct: 357 TPNYDRM-AGNRICRQIPWTWDEERLAAWEESRTGFPWIDACMMQLKQEGWMHHLARHAV 415

Query: 358 ASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           A FL + DL V W  G   F  +L+D D A NNG W W  S       YFR++ P   GK
Sbjct: 416 ACFLTRGDLFVHWEAGAAVFDRELVDADWALNNGNWMW-LSCSCFFYQYFRVYGPVSFGK 474

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHT 470
           ++D +G +IR +LP+L ++P +YI+ P +            + ++YP PIVDH  A    
Sbjct: 475 KYDKEGAYIRKYLPQLKDMPAKYIYEPWTAPIEVQRKAGCVVGVDYPAPIVDHAVASKEC 534

Query: 471 LNQYYAAKKQ 480
           + +  AA   
Sbjct: 535 IEKIAAAYNA 544


>gi|119476980|ref|ZP_01617261.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2143]
 gi|119449787|gb|EAW31024.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2143]
          Length = 528

 Score =  325 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 106/494 (21%), Positives = 193/494 (39%), Gaps = 29/494 (5%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           +    ++++VW + DLRI D+  L AA   S   ++ +++  P+ W++   S R  HFI+
Sbjct: 18  SDVKETINVVWFKRDLRINDHGPLLAASKLS-LPILPLYVVEPDYWKKSFSSRRHWHFIH 76

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDK 121
             L  +  ++S  G            D    +++      V  ++ + +   +   +RD 
Sbjct: 77  DCLTDLNTAVSSLGQPLVIK----VGDVCAAIENIHSDYNVQGIYAHEETGNLWTYQRDI 132

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            + K  +   I          P   ++              K +++ + +      P+  
Sbjct: 133 NVRKICELNNIPIHE-----YPLNGVVRKLASRNDWSVIRTKRMVEKIREKPKELKPLQR 187

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ- 240
                     +      +  + +  +   G   A+  LR F   +   Y+     P +  
Sbjct: 188 YISDKLPPKDDPM----FGEEFVGTVQNGGRNAAVDDLRGFLNHRSSGYLRHISGPRLSA 243

Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLM 295
              S+LS +L+ G LS R+    +K+    L    K        ++ + L WR  +   +
Sbjct: 244 VYCSRLSAHLAWGSLSVREVVQSVKKRQQQLNTDDKKRFGRNLTAFNSRLAWRCHFIQKI 303

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              PS+        +    E + +    QAW  G+TG+P IDA MR L   GW+  R+R 
Sbjct: 304 EDQPSIETHCMHPAFEGLRENDHNEERYQAWATGHTGYPFIDACMRNLIADGWITFRMRA 363

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +  SF    L +DWR+  ++      D +   +    Q    +G   +   R++NP  Q 
Sbjct: 364 MLVSFASYQLWLDWRVIGDHLARLFTDFEPGIHYSQLQMQ--SGVTGINAMRVYNPVKQS 421

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHH 469
              DP G +IR W+PEL ++P ++IH P +W           L   Y  PIVD+  A   
Sbjct: 422 IEHDPNGDYIRKWVPELADLPIEFIHEPWTWGKNLIDDASCILGTVYSEPIVDNASAAKD 481

Query: 470 TLNQYYAAKKQSLL 483
              +    +K    
Sbjct: 482 AKEKLAEIQKSEQF 495


>gi|38232742|ref|NP_938509.1| putative riboflavin biosynthesis protein [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199000|emb|CAE48617.1| Putative riboflavin biosynthesis protein [Corynebacterium
           diphtheriae]
          Length = 446

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 148/481 (30%), Positives = 215/481 (44%), Gaps = 52/481 (10%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +VW R+DLR+ DN AL  A      + A + AV+IA   +     +      +++ SLL 
Sbjct: 6   VVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIAN--EVGVRPLGGAVKWWLHHSLLA 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKR 126
           + + L+Q+G+           D +  L         T +  NR+Y+      D   +   
Sbjct: 64  LSEQLAQRGVRLHVLSG----DPLTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADA 119

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             H V    F   +L  PG I       YKV+TPF + L   +    L +L  P      
Sbjct: 120 SAHDVEVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAAPPKAEQP 179

Query: 187 PVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                      D  + A     I   +  GE  A   L +   + +  Y++ RD P I G
Sbjct: 180 IDDTETQAAIADLGWDAWWAASISKAWTPGEPAAREALAE-LDDILPRYLDDRDRPDIDG 238

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSP L  G LS  + WN                +  +  +L+WR+F  H +  +P +
Sbjct: 239 TSRLSPRLRFGELSVAEVWNHAH------------TSEGFRRQLMWRDFAWHRLDAHPDM 286

Query: 302 CMGKPFIPWTEKIEWN--KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                  P  +   W+       L AW+ G TG  ++DA MR+L   G MHNR+RM+ AS
Sbjct: 287 ATAN-IRPEFDHFPWDGGDFEAELNAWRHGRTGIALVDAGMRELWATGTMHNRVRMVAAS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
            LVK+L + WR GE++F   L+D D ASN   WQW A +G+D+ PYFRIFNP  Q +RFD
Sbjct: 346 LLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFRIFNPDTQARRFD 405

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP-LPIVDHKKACHHTLNQYYAAK 478
           P GT+   WLP                     +S +YP   IVD K++    L+ Y A K
Sbjct: 406 PDGTYRTRWLP--------------------IMSADYPEEAIVDLKESRLRALDAYNACK 445

Query: 479 K 479
           +
Sbjct: 446 R 446


>gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum]
          Length = 535

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 124/510 (24%), Positives = 208/510 (40%), Gaps = 40/510 (7%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQ 57
           A       + W R  +R+ DN A   +C   ++     K+  ++I  P   +     A +
Sbjct: 6   ADVGRETTVHWFRKGMRLHDNPAFKLSCEAKNSNGERYKLRPIYILDPYFRKYIRAGANR 65

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+  SL+ +  +L + G      +        E       +  V  L +    E    
Sbjct: 66  WRFLQQSLVDLDTTLRKLGTRLYVIRGLPH----EVFPDLFAKWNVKLLTFELDTEPYAR 121

Query: 118 RRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD  +E+   +H V  +      +     +L        +      +++ ++     R 
Sbjct: 122 ERDNQVEQLARKHGVKVEQKVSHTIYNTELVLRANGGSVPMTYQKFVSVVGSM-PTPRRP 180

Query: 177 LPVPAIRLTGPVTPSNIPR-FFDYP-------FQAIDP------MFPIGEQNALHILRKF 222
           +P P +  +  +   ++    FD P        +  +P      ++P GE+ AL  L ++
Sbjct: 181 IPAPDMLPSECLLDDDLNNPEFDVPTLDELLTLKGFNPAELKPCLYPGGEKEALRRLEEY 240

Query: 223 CKEKVY--YYVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            K K +   + +    P      T+ LSPY+  G LS    + RLKE   +         
Sbjct: 241 MKNKTWVCKFEKPNTSPNSLKPSTTVLSPYMKFGCLSASHFYYRLKEVIGN--SPHSKPP 298

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S + +L WREFY  + A  P+            ++ W+ +   L+AW  G TG+P IDA
Sbjct: 299 VSLIGQLYWREFYYTVGASTPNFDKMVGNSICC-QVPWDNNPDALEAWTNGKTGYPFIDA 357

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GW+H+  R   A FL + DL + W  G   F   LLD D + N G W W  S
Sbjct: 358 IMRQLRDEGWIHHLARHAVACFLTRGDLWISWEKGLAVFEELLLDADWSMNAGNWMW-LS 416

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------ND 451
                  +FR+++P   GK+ D  G +IR ++PEL   P QYI+ P S            
Sbjct: 417 ASAFFHQFFRVYSPVAFGKKTDKSGDYIRKYIPELAKYPDQYIYEPWSAPKSIQERAGCV 476

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           + ++YP  +V H+    + + +   A K +
Sbjct: 477 VGVHYPKRVVVHEDVYKNNIAKMSLAYKST 506


>gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus]
          Length = 542

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 131/501 (26%), Positives = 197/501 (39%), Gaps = 34/501 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-ISARQSHFI 61
           +++     + W R  LR+ DN+AL  AC N  A +  +F+   +           ++ F+
Sbjct: 2   SSSKEPSSIHWFRKGLRLHDNRALLEAC-NGTASLYPLFVLDSDPASPESRAGPLRTAFL 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  + + L  KG      +        E L     +  V KL +    E     RD+
Sbjct: 61  LESLQDLDEQLRAKGSRLFVVRGKPE----EVLPQLFEEWNVKKLTFEADSEPRSRARDR 116

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGS-----ILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            +    +   +      +  L         +        K Y  F K         D   
Sbjct: 117 EVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAP 176

Query: 177 -----LPVP-AIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFC--KEK 226
                LP P A          +IP   D   + +     F  GE+ AL  L +    ++ 
Sbjct: 177 DISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKALKFRGGEREALARLERVMAREDW 236

Query: 227 VYYYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           +  + + +  P      T+ LS Y+S G LS R+ W+ L + +            S   +
Sbjct: 237 ISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKG--GSKPPVSLKGQ 294

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+W+EF        PS        P   +I W+KD   L AWK+  TGFP IDAAM QL 
Sbjct: 295 LLWKEFNYFSGYSIPSFDKM-VGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLK 353

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GW+H+  R   A FL + DL   W  G   F   LLD D + NN  WQW  S      
Sbjct: 354 DEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQW-LSCSAFFY 412

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYP 457
            YFR ++P   GK+ D  G +I+ +LP L   P++YI+ P +   +        +  +YP
Sbjct: 413 QYFRCYSPIAFGKKTDQNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYP 472

Query: 458 LPIVDHKKACHHTLNQYYAAK 478
            PIVDH       + +   A 
Sbjct: 473 KPIVDHADTSKANMAKMNDAY 493


>gi|307944813|ref|ZP_07660151.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4]
 gi|307772027|gb|EFO31250.1| deoxyribodipyrimidine photo-lyase [Roseibium sp. TrichSKD4]
          Length = 527

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 114/494 (23%), Positives = 179/494 (36%), Gaps = 31/494 (6%)

Query: 1   MKATTAM--SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58
           M   + M   V +VW + DLR  D+  L  A       V+ +++  P+ W Q  +S R  
Sbjct: 1   MGDRSNMRAPVQIVWFKKDLRTYDHAPLLKAAQAG--PVLPLYVIEPKLWMQPDMSGRHF 58

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEV 117
            F+  SL+ ++  L   G+          DD I  L     +  +  L+ + +       
Sbjct: 59  AFLKESLVDLRDDLQGLGVRLVLK----VDDIIHVLTDLKSRHAIAALWSHEETGNGWTF 114

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            RDK +    +   +              ++            +       ++   +   
Sbjct: 115 ARDKRVSAWCRASGVHWHELRQT-----GVVRRLKGRTGWARQW-----DTVMGDPIAHR 164

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           P     +  P  P                    G Q AL  L  F   +   Y      P
Sbjct: 165 PQNIAAVLEPSDPFPSQHELGLNPDPCPYRQTGGRQAALATLDSFLTRRGRPYQCAMSSP 224

Query: 238 --AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-------ELIWR 288
             A    S+LSP+++ G LS R+      +    L   P  G  SW +        L W 
Sbjct: 225 VTAFDACSRLSPHIAFGTLSLREITQATYDRQRHLKTNPLPGDRSWRSAMRSFSGRLHWH 284

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
             +   +   P +        +        D  L QAWK G TG P +DA MR L+  GW
Sbjct: 285 CHFMQKLEDEPRLEFENLHQAYDGLRPSVPDETLFQAWKAGETGLPFVDACMRALSATGW 344

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M+ R+R +  +     L +DWR    +      D +   +    Q    +G   +   RI
Sbjct: 345 MNFRMRAMLVAVSSYHLWLDWREPGLHLARLFTDYEPGIHWPQVQMQ--SGTTGINTVRI 402

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKAC 467
           +NP  QG   DP G F+R W+PEL ++  Q+IH P    +    L   YP P+VDH  A 
Sbjct: 403 YNPVKQGLDQDPDGVFVRRWVPELADIDAQHIHEPWKADNAGRVLGKRYPFPVVDHLSAA 462

Query: 468 HHTLNQYYAAKKQS 481
                + +A +K  
Sbjct: 463 KEAREKVWAIRKGG 476


>gi|194332801|ref|NP_001123706.1| hypothetical protein LOC100170456 [Xenopus (Silurana) tropicalis]
 gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis]
          Length = 557

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 130/493 (26%), Positives = 207/493 (41%), Gaps = 30/493 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQV 68
            +   R  LR+ DN  L  A   SD  V  V+I          +  +++ +F   S+  +
Sbjct: 5   TIHIFRKGLRLHDNPTLVTALETSDV-VYPVYILDRNFMTSSSVIGSKRWNFFLQSIEDL 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +        Q     D    L  +  +  +T++ ++ + E      D+ +    Q
Sbjct: 64  HCNLQKLNSCLFVIQG----DYERVLREHVEKWNITQVTFDLEIEPYYKGLDERIRAMGQ 119

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                  S     L     IL        +       ++  L   D  +  + +      
Sbjct: 120 ELGFEVVSMVAHTLYDIKKILALNCGKPPLTYKNFLRVLSMLGNPDKPARQITSEDFIKC 179

Query: 188 VTPSNI--------PRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVY--YYVEQRDI 236
           +TP+ +        P+  D       P  +  GE  AL  L +  +++ +   + + + I
Sbjct: 180 ITPTKLAAEEYYRIPKPEDLGISKDCPTNWIGGESEALSRLEQHLEKQGWVANFKKPQTI 239

Query: 237 PA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           P   +  T+ LSPY S+G LS R  ++RL   +            S   +L+WREF+  +
Sbjct: 240 PNSLLPSTTGLSPYFSLGCLSVRVFFHRLSNIYAQSK-NHSLPPVSLQGQLLWREFFYTV 298

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            +  P+        P   +I+W K+   LQ WK+  TGFP IDA M QL+  GW+H+  R
Sbjct: 299 ASSTPNFT-HMVGNPICLQIDWYKNEEQLQKWKEAKTGFPWIDAIMTQLHNEGWIHHLAR 357

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D   N G W W  S       Y RIF P  
Sbjct: 358 HAVACFLTRGDLWISWEEGMKVFEEFLLDADYCINAGNWMW-LSASAFFHHYTRIFCPVR 416

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467
            GKR DP+G +IR +LP L N P +YI+ P +  ++        +  +YPLP+VDHK A 
Sbjct: 417 FGKRSDPEGNYIRKYLPVLKNFPAKYIYEPWTAPEEIQKQAGCLIGKDYPLPMVDHKTAS 476

Query: 468 HHTLNQYYAAKKQ 480
            H L      +++
Sbjct: 477 EHNLQLMRQVREE 489


>gi|318058735|ref|ZP_07977458.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actG]
          Length = 455

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 129/470 (27%), Positives = 220/470 (46%), Gaps = 22/470 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +A ++ F+   L 
Sbjct: 1   MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G            D  + +          ++            R   L   
Sbjct: 60  DLDAGLRERGGRLVVR----AGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+         ++V+  LPPG ++  +   + V+TP+ +      ++  L +     + +
Sbjct: 116 LEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAP--RKLSV 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              V    +PR  D        +   GE+     L  + ++ +  Y +  D  A  GTS+
Sbjct: 174 PSKVRSDGVPRREDVE-GISPGLARGGEREGRAKLASWRRDGISRYEDLHDDLAGDGTSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LS  +C +R             +GA +++ +L WR+F+  ++A  P+    
Sbjct: 233 LSPYLHFGALSAAECVHR-------ARAAGGAGADAFVRQLCWRDFHHQVLAARPAAA-H 284

Query: 305 KPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           + + P  +      D+     AW++G TG+P++DAAMRQL   GWMHNR R++ ASFL K
Sbjct: 285 EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L +DWR+G  +F+  L+DGDL +N   WQW A TG D+ P  R+ NP  Q +++DP+G 
Sbjct: 345 TLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDPEGD 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           ++RHW+PEL  +  + +H P  W    +    YP P+VD  +        
Sbjct: 404 YVRHWVPELRGIEGRAVHEP--WKRPREEREGYPEPLVDLAEGRDRFRRA 451


>gi|327274302|ref|XP_003221917.1| PREDICTED: cryptochrome DASH-like [Anolis carolinensis]
          Length = 525

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 133/482 (27%), Positives = 220/482 (45%), Gaps = 31/482 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISAR 56
           A++     L  LRNDLR  DN+ L+ A  ++D +++ ++   P  + Q            
Sbjct: 2   ASSLPRTALCLLRNDLRCHDNEVLHWAQSHAD-RIVPLYCFDPRHYAQTYHYNFPKTGPF 60

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F+  S+  ++++L +KG      +    D   + +        V  + ++ +    E
Sbjct: 61  RLRFLLESVKDLRETLKKKGSNLVVRKGKPEDVVRDLIIQLG---SVASVSFHEEATKEE 117

Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADL 174
           +  +K L +   +H V  ++F  S L     +   H  Q+  VYT FRKA+        +
Sbjct: 118 LDVEKALIRVCTEHGVEVQTFWGSTLYHRQDLPFKHISQLPDVYTQFRKAVESQARVRPV 177

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQA------IDPMFPIGEQNALHILRKFCKEKV- 227
             +      L   +   NIP   D+             +   GE  AL  L+ +  E   
Sbjct: 178 LKMEGQMKSLPPEIEEGNIPSLEDFGMTEPLRDPRSAFLCSGGETQALMRLQHYFWETNL 237

Query: 228 -YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              Y E R+ +  +  +++ +P+L++G +SPR  ++++++   +         +  L EL
Sbjct: 238 VASYKETRNGLIGLDYSTKFAPWLALGCISPRYIYDQIQKYEKERT--ANQSTYWVLFEL 295

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR+++R +   Y       P     + I W KD  L  AWK+G TG P +DA MR+L T
Sbjct: 296 AWRDYFRFVALKYGRKIFF-PRGLQDKDISWKKDPKLFDAWKEGRTGVPFVDANMRELAT 354

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R   ASFL KDL +DWR+G E+F S L+D D+ SN G W ++A  GND    
Sbjct: 355 TGFMSNRGRQNVASFLTKDLGLDWRMGAEWFESLLVDYDVCSNYGNWLYSAGIGNDPREN 414

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLP 459
            R FN   Q   +D  G + R W+PEL  +    +H P +            L  +YP+P
Sbjct: 415 -RKFNMIKQALDYDGNGDYARLWVPELQCIRGGDVHTPWALSNGALSQAGVSLGSSYPVP 473

Query: 460 IV 461
           I+
Sbjct: 474 II 475


>gi|21219363|ref|NP_625142.1| deoxyribodipyrimidine photolyase [Streptomyces coelicolor A3(2)]
 gi|5459246|emb|CAB48919.1| putative deoxyribodipyrimidine photolyase [Streptomyces coelicolor
           A3(2)]
          Length = 458

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 140/478 (29%), Positives = 223/478 (46%), Gaps = 25/478 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +V    DLR+ D+  L AA   SDA V+ +F+           +  +   +   L 
Sbjct: 1   MATSVVLFTRDLRLHDHPPLRAALDRSDA-VVPLFVRDRAVDAAGFAAPNRLALLADCLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L  +G            D +E + +   +    ++        +  RR++LL   
Sbjct: 60  DLDSGLRDRGGRLVVRSG----DLVEEVCAVAGEAEADEVHLAADVSAHAHRREELLRSA 115

Query: 127 LQHRVICKSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L  R       D  + +L PGS+   +   + V+TP+ +   +  V+  L +     +R+
Sbjct: 116 LSARGCRLHVHDAVTTVLAPGSVTPASSDHFAVFTPYFRRWSERAVREPLAAP--RRVRV 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
              V    +P   D     + P  P  GE++A   L  + +  +  Y +  D  A   TS
Sbjct: 174 PDGVGSEPLPARGDL--TGLSPGLPTGGERDARKRLTAWLRGGIADYADHHDDLAGDATS 231

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP L +G LSP +  +R +            GA +++ +L WR+F+  ++A  P    
Sbjct: 232 RLSPDLHLGALSPVELVHRARRA-------GGPGAEAFVRQLAWRDFHHQVLAARPHASA 284

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                                AW+ G TG+P++DAAMRQL   GWMHNR R++ ASFL K
Sbjct: 285 ADYRTRHDRWRTGAAAEADAAAWRDGRTGYPVVDAAMRQLRHEGWMHNRGRLLVASFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L VDWR+G  +F+  L+DGD+A+N   WQWAA TG D+ P+ R+ NPT Q +RFDP GT
Sbjct: 345 TLYVDWRVGAWHFLELLVDGDVANNQLNWQWAAGTGTDTRPH-RVLNPTTQARRFDPGGT 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           ++R W+PEL  +  + +H P             YP PIVD  +     L+++  A+ +
Sbjct: 404 YVRRWVPELAGLAGRSVHEPWRLARAARAAYDAYPDPIVDLSEG----LDRFRRARGR 457


>gi|148238972|ref|YP_001224359.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
 gi|147847511|emb|CAK23062.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7803]
          Length = 490

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 124/478 (25%), Positives = 197/478 (41%), Gaps = 35/478 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW + DLR+ D++ L  A       V+ ++I  PE W Q   SARQ  F   SL 
Sbjct: 1   MTLQLVWFKRDLRLVDHQPLARALARG--PVLPLYIVEPELWSQPDCSARQWAFCRESLQ 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125
            +Q++ +  G            D+++ L+    Q  V+ L+ + +        RD+ +  
Sbjct: 59  DLQQACAALGQPLIIRSG----DAVDVLERARCQLGVSALWSHEETGNAWTFVRDRRVAA 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             + R I         LP   ++            +   + + +  A     P+P I   
Sbjct: 115 WARERGIPWHE-----LPQFGVVRRLGTRRGWARRWEARMGEAMTPAPTSLTPLPGIAPG 169

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
              T   +    D            G   AL  L  F   +V  Y      P  A  G S
Sbjct: 170 DLPTSEALALRSD----PCPHRQHGGRGMALQELDDFLAHRVQRYCRSISSPNLAFNGCS 225

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS Y++ G LS R+   R ++           G  S+ + L W   +   +   P +  
Sbjct: 226 RLSAYITWGCLSMREVLQRSRDL-------KGRGVSSFTSRLHWHCHFIQKLEDQPPIEW 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P+   I  + D     AW +G TG P +DA MR L   GW++ R+R +  SF   
Sbjct: 279 -EDFHPFMRGIR-SLDHERFAAWAEGQTGVPFVDACMRALRAHGWINFRMRAMLMSFASY 336

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L + WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG   DP+GT
Sbjct: 337 NLWLPWRETGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGMDHDPEGT 394

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR W PEL +VP  ++H P S      L    P PIVD  ++      + +  ++ S
Sbjct: 395 FIRRWCPELEDVPAVHLHEPWS------LGGTRPKPIVDCAQSAREAKERIFEIRRSS 446


>gi|157737085|ref|YP_001489768.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018]
 gi|157698939|gb|ABV67099.1| deoxyribodipyrimidine photolyase [Arcobacter butzleri RM4018]
          Length = 450

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 146/469 (31%), Positives = 229/469 (48%), Gaps = 25/469 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R DLRI DN+ L  A      +V+ +FI      +      ++  FIY S+ +++
Sbjct: 3   QILWFRRDLRIIDNEILANA----KGEVLPIFIFDKNILQNLPKDDKRVTFIYKSVYKLK 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L   G+         FD           +    ++  +  ++    +RD+ +EK    
Sbjct: 59  EDLKSIGLDLAI----FFDTPKNVFTKLKKE-NFDEILVSVDFDNYAKKRDEEVEKI--- 110

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  + F DS L+ P  IL    + YKV+TPF   L        +               
Sbjct: 111 -IPLRRFLDSYLIDPKIILKSDQKPYKVFTPFYNYLEPLHQSNHIEEFKTATNIKKINFD 169

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
               P   D  F  I+   P     +   L     +K+  Y + RD   +   S LS +L
Sbjct: 170 YDFFPTLQDLGF--IEQKLPDFLYKSADELITIFSKKINNYQKNRDFFHLDAGSNLSVHL 227

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G++S +  +N++K+        PK     ++ ELIWREFY +++  +P          
Sbjct: 228 RFGLISAKMVFNKIKKLQA-----PKKEIDFFIRELIWREFYNYILFHFPKSQFENLNGI 282

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
               + WN++    + W +G TG PIIDA+M+ LN  G MHNRLRMI AS+LVK+LL+DW
Sbjct: 283 E---VNWNENEEDFKKWCEGNTGVPIIDASMKHLNNTGLMHNRLRMIVASYLVKNLLIDW 339

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           + GEEYF  +LLD + +SN G WQWAASTG D+VPYFR+FNP +Q K+FD +  FI+  L
Sbjct: 340 KKGEEYFALKLLDYEASSNIGSWQWAASTGVDAVPYFRVFNPYLQSKKFDSEAIFIKSVL 399

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +L ++PT+ IH  +   +  ++ L+YP  IV    +    + ++  A 
Sbjct: 400 KDLKDIPTKQIHTENGIQE--NIFLDYPKQIVGINYSRDRAILEFKRAN 446


>gi|120556015|ref|YP_960366.1| deoxyribodipyrimidine photo-lyase [Marinobacter aquaeolei VT8]
 gi|120325864|gb|ABM20179.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Marinobacter aquaeolei VT8]
          Length = 505

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 109/480 (22%), Positives = 192/480 (40%), Gaps = 25/480 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLR+ D+  LYAA  +    V+ +++  PE W+Q   S RQ  F+  SL  ++K
Sbjct: 4   VVWFKRDLRVEDHGPLYAAVQSGQ-PVVPLYVVEPEYWQQPDTSRRQWQFVAESLESLRK 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQH 129
            L + G            + I  LD    Q  +T++F +++   +   +RDK +    Q 
Sbjct: 63  QLKRLGSDLLIAHG----EVIRTLDDLKQQYGITQVFCHQETGGDWTFQRDKAVIAWCQS 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           + I         +    +                     ++++     P           
Sbjct: 119 QQIEFREWQGFGVVRRLVNRDD----------WDQHWNRIIKSTRLPAPEGIRSPDTSGW 168

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247
           P ++P                G + A+ +L  F + +   Y      P  A +  S+LSP
Sbjct: 169 PQSLPAPAQLNGGPCPDRQAGGSERAIALLDSFLERRCVGYQYNMSSPLTAPRACSRLSP 228

Query: 248 YLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           +L+ G +S R  + + KE  +  + L + K    S+ + L W   +   +   P +    
Sbjct: 229 HLAWGTISLRDVYQQSKETGDHRNTLPRKKKSLTSFRSRLHWHCHFIQKLEDEPELEFRA 288

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                        +S  L  W++G TG+P++DA MR L   GW++ R+R +  +     L
Sbjct: 289 MHRELEHLKTGPNNSERLHRWQEGQTGWPLVDACMRSLEHTGWINFRMRAMLMAVASYQL 348

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + WR    +      D +   +    Q    +G   +   RI+NP +Q ++ DP+G FI
Sbjct: 349 WLHWRDPALHLARLFTDFEPGIHYPQAQMQ--SGLTGINALRIYNPVLQSQKLDPEGEFI 406

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           R W+PEL  VP + IH P               Y  P+ DH++A           +K+ +
Sbjct: 407 RRWIPELAGVPAEMIHTPWLMTPAQKQRFGGNTYISPVCDHEQAARVARKAVGEFRKRQV 466


>gi|313682739|ref|YP_004060477.1| deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155599|gb|ADR34277.1| Deoxyribodipyrimidine photo-lyase [Sulfuricurvum kujiense DSM
           16994]
          Length = 455

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 137/480 (28%), Positives = 206/480 (42%), Gaps = 41/480 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLRI DN  L       + +V+ +FI  P          R+   IY +LL ++ 
Sbjct: 4   ILWFRRDLRIEDNPLLSL-----EGEVLPIFIFDPNILSSLQNDDRRVSIIYNALLNLKS 58

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL  +G+         +   ++       +    ++  +  Y+   + RD+ +   L   
Sbjct: 59  SLQMRGLDL----ALFYGKPVDVFKWLLSRHHFDEVCASGDYDHYALERDREISHLLP-- 112

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG---- 186
               S DD+ +  P  I+ +    Y V+TPF            +R        LT     
Sbjct: 113 --FNSLDDTYIFRPDEIVKNDGTPYLVFTPFYNRAKSLFSPEHMREFIPVEQSLTDFEYD 170

Query: 187 -------PVTPSNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                      S   +     F  Q +         +    L +F   K+ +Y + RD  
Sbjct: 171 SLHTIRQSDHTSKPMQLESIGFISQKLSSRQQ---SSPAIQLDQFAS-KIAHYSQDRDYM 226

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A+ GTS LS  L  G LS R     +      +  K  S    +  +LI+REFY  L+  
Sbjct: 227 ALNGTSGLSTQLRFGTLSVRAVLRWML-----IQKKRGSDTEPFFRQLIFREFYAMLLYH 281

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +P +     F      I    +     A+    TG PI+DA +R+L   G MHNR RM+ 
Sbjct: 282 FPHLSEQN-FRYPFRGIA---NEEYFNAFCTAKTGVPIVDAGIRELLETGEMHNRARMLC 337

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           ASF  K+LL+ W+ GE +F   L D D ASN   WQW+A TG D  PYFRIFNP  QGK+
Sbjct: 338 ASFFTKNLLLPWQWGEAFFAQHLNDYDAASNILSWQWSAGTGVDPQPYFRIFNPYAQGKK 397

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FD  G +IR W+P+L +V +  +H   +         +YP PIV  K +    L+ + + 
Sbjct: 398 FDSDGVYIRRWMPQLASVSSTTLHNETALFSLTL--CDYPHPIVYQKTSAKRALDHFKSI 455


>gi|302745154|gb|ADL62680.1| criptochrome 1b [Phreatichthys andruzzii]
          Length = 564

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 109/452 (24%), Positives = 182/452 (40%), Gaps = 30/452 (6%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
            +   +  F+   L  +  SL +        +    D           + ++T+L Y   
Sbjct: 3   NVGINRWRFLLQCLEDLDASLRKLNSRLFVIRGQPTD----VFPRLFKEWKITRLSYEYD 58

Query: 112 YEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
            E     RD  ++K   +  V         L     I+        +     + LI  + 
Sbjct: 59  SEPFGKDRDAAIKKLATEAGVEVFVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISKMD 118

Query: 171 QADLRSLPVPAIRLTGPVTPSN--------IPRFFDYPFQA---IDPMFPIGEQNALHIL 219
             ++ +  + A  +    TP +        +P   +  F+       ++P GE  AL  L
Sbjct: 119 PVEIPAETITAEVMGKCATPVSDDHDDKFGVPSLEELGFETDGLSSAVWPGGETEALTRL 178

Query: 220 RKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
            +  + K +    +R            + LSPYL  G LS R  + +L + +  +  K  
Sbjct: 179 ERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNS 237

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
               S   +L+WREF+       P     + F P   +I W+++   L  W +G TGFP 
Sbjct: 238 LPPLSLYGQLLWREFFYTAATNNPHFDKME-FNPICVQIPWDRNPEALAKWAEGRTGFPW 296

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W
Sbjct: 297 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW 356

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
             S  +    +F  + P   G+R DP G +IR +LP L   P ++I+ P +  +      
Sbjct: 357 -LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPILRGFPAKFIYDPWNAPESVQKVA 415

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           K  + ++YP P+V+H +A    + +     +Q
Sbjct: 416 KCIIGVHYPKPMVNHAEASRINIERMKQIYQQ 447


>gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis]
 gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis]
          Length = 541

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 125/501 (24%), Positives = 184/501 (36%), Gaps = 35/501 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             S  + WLR  LRI DN AL  A  N       V+I   +      I      F+  +L
Sbjct: 19  KTSHSIHWLRKGLRIHDNPALRDAVLNWGTF-RVVYILDTKSVASSNIGLNLWRFLLQAL 77

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       +  +T+L +    E     RD  +  
Sbjct: 78  EDLDDSLRKLNSRLFVIRG----QPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICM 133

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             +   V   S     L     I++         Y  F   +              P+ +
Sbjct: 134 LAREAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQ 193

Query: 184 LTGPVTPSNIP-------RFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQ 233
             G    S+            +   +       ++  GE  AL  L +  + K +     
Sbjct: 194 ELGHTPLSDNHDELYGVPTMEELGLETSKLFVEVWHGGETEALKRLDRHLERKAWIASFG 253

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           +            S +SPYL  G LSPR  + RL + +  +  K      S   +L+WRE
Sbjct: 254 KPKVTSDSLMASPSGVSPYLRFGCLSPRLFYYRLMDLYRKV--KGGPPPTSLYGQLLWRE 311

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTI 346
           F+  +    P+    +   P    I+W  D      LQ W    TGFP IDA M QL   
Sbjct: 312 FFFVVSTNNPNFDKMES-NPICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQE 370

Query: 347 GWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H   R+  ASFL +  L + W  G + F   LLD D +SN G W W  S    S  +
Sbjct: 371 GWIHYLARVAIASFLTRGCLWISWEAGMKVFAEHLLDADWSSNAGNWMWW-SYSAFSQQF 429

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLP 459
           F    P    K  D  G +IR +LP L   P +YIH P         + K  +  +YP P
Sbjct: 430 FNPPCPVEFSKSLDASGDYIRKYLPVLKGFPARYIHEPWKAPLNVQKMAKCIIGKSYPSP 489

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +VDH+KA    + +  +  K 
Sbjct: 490 MVDHEKAVSKNMEEMTSVYKS 510


>gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae]
          Length = 548

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 111/500 (22%), Positives = 192/500 (38%), Gaps = 39/500 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R+ LR+ DN +L++A          VFI   E      +   +  ++  +L  + 
Sbjct: 5   SVLWFRHGLRLHDNPSLHSALEEKGFPFFPVFIFDGETAGTKVVGYNRMRYLLEALEDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L + G      +                +  + +L + +  E     RD  ++   + 
Sbjct: 65  NQLKKHGGRLIMIKGKPNV----VFRRLWEEFGIRRLCFEQDCEPVWRARDDSVKSACKE 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V+CK      L  P +++     +  +        +  +         +    +    
Sbjct: 121 IGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVSDIDFTGVKFGS 180

Query: 189 TPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVY----- 228
            P +    F    +   P                +  GE  AL  +++    +       
Sbjct: 181 LPESFYHEFTVYDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLAVEYETFLRG 240

Query: 229 YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSWLNE 284
            Y+     P + G    LSP L  G LS R  +  +++ F  +    +  +S +     +
Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLATQSASHFITGQ 300

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQL 343
           LIWRE++  +    P+        P    I W +     LQ W +G TGFP +DAAMRQL
Sbjct: 301 LIWREYFYTMSVNNPNYG-QMAGNPICLDIPWKEPEGDELQRWVEGRTGFPFVDAAMRQL 359

Query: 344 NTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
            T GW+H+  R   ASFL +  L + W  G  +F+  LLD D +   G W W +S+  ++
Sbjct: 360 RTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEA 419

Query: 403 -VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455
            +       P   G+R DP G ++R ++PEL  +P QYI+ P              +  +
Sbjct: 420 LLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVQYIYEPWKAPIDIQERATCIIGKD 479

Query: 456 YPLPIVDHKKACHHTLNQYY 475
           YP P+V+H  A     N   
Sbjct: 480 YPAPVVNHLVAAQRNKNAMK 499


>gi|255964971|gb|ACU44658.1| cryptochrome 2B [Medicago sativa]
          Length = 484

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 115/434 (26%), Positives = 202/434 (46%), Gaps = 21/434 (4%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
                  ++  SL  + +SL   G      +    D +++ L       +  K+ +N  Y
Sbjct: 2   PGRVSRWWLKQSLSHLDQSLKSLGAGLVMIKT---DSTLKALLECVNAVQAEKVVFNHLY 58

Query: 113 EINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           +   + RD  ++++L    I  +S++  +L  P  I + +   +  + PF    +Q  ++
Sbjct: 59  DPVSLVRDHNIKEKLVELGISVQSYNGDLLHEPWHIYDESGHAFTTFDPFWNRCLQMQMK 118

Query: 172 ADLRSLPVPAIRLTGPVTPSNI------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
                 P   I   G V   +I                +   +  G   +   L +F + 
Sbjct: 119 TYSPIPPCQLILAQGKVEKHSIEQLGLENELETSSNALLARAWSPGWSKSDKALTEFVEN 178

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSW 281
            + +Y + R    +  TS LSPY+  G LS R+ +   + + +    +        A  +
Sbjct: 179 NLIHYTKSRLNLGVDSTSLLSPYIHFGELSVRKVFQLARTKQILWKNEGNIVGEESATFF 238

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           L  + +RE+ R+L   +P   + +P +   +   WN D  + +AW+ G TG+P++DA MR
Sbjct: 239 LKAIGFREYSRYLCFSFP-FTVERPLLGNLKFFPWNTDPSMFKAWRLGRTGYPLVDAGMR 297

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   GW+HN++R+I +SF VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D
Sbjct: 298 ELWATGWIHNKMRVIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPD 357

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLN 455
                R+ +P IQG ++D +G ++R WLPEL  +PT++IH P +           +L  N
Sbjct: 358 GHELERLDDPEIQGTKYDSEGEYVRQWLPELARIPTEWIHHPWNAPPTVLRASGVELGQN 417

Query: 456 YPLPIVDHKKACHH 469
           YP PI+D   A   
Sbjct: 418 YPKPIIDIDLAREQ 431


>gi|224095373|ref|XP_002196554.1| PREDICTED: cryptochrome 1 (photolyase-like) [Taeniopygia guttata]
          Length = 588

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 109/445 (24%), Positives = 179/445 (40%), Gaps = 30/445 (6%)

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L  +  +L +        +        +       +  + KL      E     
Sbjct: 21  RFLLQCLEDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNIAKLSIEYDSEPFGKE 76

Query: 119 RDKLLEKRLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLR 175
           RD  ++K      +         L     I+  +  Q    Y  F+  + +   ++  + 
Sbjct: 77  RDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 136

Query: 176 SL-PVPAIRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226
           ++ P    + T PV+  +  +       +  F        ++P GE  AL  L +  + K
Sbjct: 137 TITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 196

Query: 227 VYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +    +R            + LSPYL  G LS R  + +L + +  +  K  S   S  
Sbjct: 197 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLY 255

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M Q
Sbjct: 256 GQLLWREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQ 314

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  + 
Sbjct: 315 LRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSF 373

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLN 455
              +F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +N
Sbjct: 374 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVN 433

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480
           YP P+V+H +A    + +     +Q
Sbjct: 434 YPKPMVNHAEASRLNIERMKQIYQQ 458


>gi|332292002|ref|YP_004430611.1| DNA photolyase FAD-binding protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170088|gb|AEE19343.1| DNA photolyase FAD-binding protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 510

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 112/490 (22%), Positives = 188/490 (38%), Gaps = 24/490 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
              V++VW + DLR+ D+  LY A       ++ ++I  P        S R  +FI  SL
Sbjct: 13  KKEVNIVWFKRDLRLHDHLPLYNALQEGQ-PLLLLYILEPSLEVDPHYSDRHFNFIKESL 71

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLE 124
           L +QK L               D+ +          ++  +F +++  +     RD  LE
Sbjct: 72  LNLQKELKAFNTKILIIH----DEVVSAFKELIKHYKIHTVFSHQETGLRVTYDRDLALE 127

Query: 125 KRLQHRVICKSFD--DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
               +  I    +    V      +             +   + Q  +    +   + +I
Sbjct: 128 AYANNLKIASPENKFGWVEFANNGVQRKLRNRVGWSEDWEWFMKQPQIPFQPKKNQLLSI 187

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY-YYVEQRDIP--AI 239
                +   +  +       A  P    G   A+  L  F  +  Y  Y +    P  A 
Sbjct: 188 EDINAL--EDNFKKVSLQTSASSPFQKGGTTMAMRYLTSFLHDNRYLNYAKHISKPSLAR 245

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +  S+LSPY++ G +S RQ +   K        K K     + + L W+  +        
Sbjct: 246 KSCSRLSPYIAWGNVSIRQVYQEAKHFRES--SKNKRAIDGFTSRLRWQAHFIQKFEMED 303

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+           K+  N +    +AWK+G TG+P++DA MR L   G+++ R+R +T S
Sbjct: 304 SMEFV-SVNKGYHKLSKNVNVKYQKAWKEGKTGYPLVDACMRCLCETGYLNFRMRAMTLS 362

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F   +L   W+    +   Q LD +   +    Q     G   +   RI+NP       D
Sbjct: 363 FFTHNLWQPWQDATYHLAQQFLDFEPGIHYPQIQMQ--AGETGINMLRIYNPVKNSYEHD 420

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQ 473
             G FI+ W+PEL NVP  YIH P +            +  +YP PI+D KK   H  + 
Sbjct: 421 EDGEFIKKWIPELVNVPVAYIHEPWTMSALEQQFCNTVIGEDYPAPIIDIKKTAKHAGDV 480

Query: 474 YYAAKKQSLL 483
            +  K  +++
Sbjct: 481 LWKLKDDNMV 490


>gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis]
 gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis]
          Length = 556

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 131/493 (26%), Positives = 208/493 (42%), Gaps = 30/493 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQV 68
            +   R  LR+ DN  L AA   SD  +  V+I          +  +++ +F+  S+  +
Sbjct: 5   TIHIFRKGLRLHDNPTLVAALETSDI-IYPVYILDKNFMTSSSVIGSKRWNFLLQSIEDL 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L +        Q     D    L  +  +  +T++ ++ + E      D+ +    Q
Sbjct: 64  HCNLQKLNSCLFVIQG----DYQSVLREHVQKWHITQVTFDLEIEPYYKGMDERIRAMGQ 119

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                  S     L    SIL        +       ++  L   D  +  +        
Sbjct: 120 ELGFDVVSKVAHTLYDVKSILALNYGKPPLTYKNFLRVLSVLGDPDKPARQITLEDFIKC 179

Query: 188 VTPSN--------IPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDI 236
            TP+         IP+  D    +   P +  GE  AL  L +  +++ +   + + + +
Sbjct: 180 TTPTEFAAEEYYRIPKPEDLGICRDCAPNWKGGESEALCRLEQHLEKQGWVANFQKPQTV 239

Query: 237 PA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           P   +  T+ LSPY S G LS R  ++RL   +            S   +L+WREF+   
Sbjct: 240 PNSLLPSTTGLSPYFSFGCLSARVFYHRLSNIYAQSK-NHSLPPVSLQGQLLWREFFYTA 298

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            +  P+        P   +IEW K+   LQ W++G TGFP IDA M QL+  GW+H+  R
Sbjct: 299 ASSTPNFT-HMVGNPICLQIEWYKNEEQLQKWREGKTGFPWIDAIMAQLHEEGWIHHLAR 357

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W  S       Y RIF P  
Sbjct: 358 HAVACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMW-LSASAFFHHYTRIFCPVR 416

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKAC 467
            G+R DP+G +IR +LP L N P +YI+AP +  ++        +  +YPLP+VDH  A 
Sbjct: 417 FGRRTDPEGNYIRKYLPVLKNFPAKYIYAPWTAPEEIQKQSGCLIGKDYPLPMVDHTTAS 476

Query: 468 HHTLNQYYAAKKQ 480
            H L      ++ 
Sbjct: 477 EHNLQLMRLVREA 489


>gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus]
 gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus]
          Length = 529

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 134/494 (27%), Positives = 209/494 (42%), Gaps = 33/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQV 68
            +   R  LR+ DN AL AA  +S+  V  V+I           I A + HF+  SL  +
Sbjct: 5   TIHLFRKGLRLHDNPALLAALQSSEV-VYPVYILDRAFMTSSMHIGALRWHFLLQSLEDL 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + SL Q G      Q     +    +  +  +  +T++  + + E      +  +    +
Sbjct: 64  RSSLRQLGSCLLVIQG----EYESVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRGLGE 119

Query: 129 HRV-ICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKAL---------IQNLVQADLRSL 177
                  S     L     IL  +       Y  F + L         ++N    D +  
Sbjct: 120 ELGFQVLSLMGHSLYNTQRILELNGGTPPLTYKRFLRILSLLGDPEVPVRNPTAEDFQRC 179

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235
             P + L        +P     P ++I P +  GE   L  L +   ++ +   + + + 
Sbjct: 180 SPPELGLAECYGVP-LPTDLKIPPESISP-WRGGESEGLQRLEQHLADQGWVASFTKPKT 237

Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +P   +  T+ LSPY S G LS R  + RL   +            S   +L+WREF+  
Sbjct: 238 VPNSLLPSTTGLSPYFSTGCLSVRSFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFFYT 296

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           + +  P+        P   +I W +D+  L  WK   TGFP IDA M QL   GW+H+  
Sbjct: 297 VASATPNFTKM-AGNPICLQIRWYEDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLA 355

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S       Y RIF P 
Sbjct: 356 RHAAACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMW-LSASAFFHHYTRIFCPV 414

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
             G+R DP+G +IR +LP L N P++YI+ P +  ++        +  +YP P+VDHK+A
Sbjct: 415 RFGRRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEEEQKQAGCIIGRDYPFPMVDHKEA 474

Query: 467 CHHTLNQYYAAKKQ 480
             H L     A+++
Sbjct: 475 SDHNLQLMKQAREE 488


>gi|302517648|ref|ZP_07269990.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
 gi|302426543|gb|EFK98358.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SPB78]
          Length = 455

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 129/478 (26%), Positives = 225/478 (47%), Gaps = 26/478 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +A ++ F+   L 
Sbjct: 1   MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G            D  + +          ++            R   L   
Sbjct: 60  DLDAGLRERGGRLVVR----AGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+         ++V+  LPPG ++  +   + V+TP+ +      ++  L +     + +
Sbjct: 116 LEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAP--RKLSV 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              V    +PR  D        +   GE+     L  + ++ +  Y +  D  A  GTS+
Sbjct: 174 PSKVRSDGVPRREDVE-GISPGLARGGEREGRAKLASWRRDGISRYEDLHDDLAGDGTSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LS  +C +R             +GA +++ +L WR+F+  ++A  P+    
Sbjct: 233 LSPYLHFGALSAAECVHR-------ARAAGGAGADAFVRQLCWRDFHHQVLAARPAAA-H 284

Query: 305 KPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           + + P  +      D+     AW++G TG+P++DAAMRQL   GWMHNR R++ ASFL K
Sbjct: 285 EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L +DWR+G  +F+  L+DGDL +N   WQW A TG D+ P  R+ NP  Q +++D +G 
Sbjct: 345 TLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP-GRVLNPLTQARKYDSEGD 403

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           ++R W+PEL  +  + +H P  W    +    YP P+VD  +      +++  A++Q 
Sbjct: 404 YVRQWVPELRGIEGRAVHEP--WKRPREEREGYPEPLVDLAEGR----DRFRRAREQG 455


>gi|34557872|ref|NP_907687.1| deoxyribodipyrimidine photo-lyase [Wolinella succinogenes DSM 1740]
 gi|34483590|emb|CAE10587.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE DNA PHOTOLYASEPHOTOREACTIVATING
           ENZYME [Wolinella succinogenes]
          Length = 447

 Score =  323 bits (827), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 217/468 (46%), Gaps = 35/468 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLR+ DN+    A      +V+ +FI             R+  +IY  +++++
Sbjct: 3   SLIWFRRDLRLEDNRTFEQAS----GEVLPLFIFDSHLLSPLPKEDRRVGYIYGEVMRLK 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L  +G+         + + ++ L     +Q  ++LF ++ Y+   + RD+   + L  
Sbjct: 59  SELRARGLDLAI----FYGEPLKILSRL-KEQGFSRLFASQDYDSYALSRDEAARELLD- 112

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIRLTG 186
              C+   D+ L  P  +L      Y +++ +    ++ L +        LP        
Sbjct: 113 ---CRFVLDNYLFDPNEVLKKEGSPYTIFSAYYNQSLKILSEGHYAKGLDLPKKLAPYPI 169

Query: 187 PVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           P  PS     F   P      + P         L +F   K+  Y   RD    + TS L
Sbjct: 170 PAPPSLESMGFSPLPLLESLKILP------QKRLEEFSS-KITRYALDRDSLEAEATSGL 222

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S +L  G L  R+   RLK    + +         +  +++WREFY  L+  +P     +
Sbjct: 223 SLFLRFGTLGVREVIRRLKVWQEEGIK-----VAPFYRQILWREFYAMLLYHFPH-SERE 276

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F P   ++ W++    L+ W++G  G P++DA MR+LN  G+MHNR RM+ ASFL K+L
Sbjct: 277 DFKPM--QMRWSESQERLERWQKGECGVPLVDAGMRELNHTGFMHNRARMVCASFLTKNL 334

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W  GE YF S+LLD D+A N G WQW A +G D+ P+FRIFNP  Q  +FDP+G ++
Sbjct: 335 HLHWSWGERYFASKLLDYDVAQNAGNWQWCAGSGADAQPFFRIFNPYTQSLKFDPKGEYV 394

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           + W+PEL  + TQ   +   W     L   Y  PIV  K++       
Sbjct: 395 KRWIPELRGISTQNWSSEERW---EGLKERYLAPIVSAKRSAQEAKAM 439


>gi|126695730|ref|YP_001090616.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. MIT 9301]
 gi|126542773|gb|ABO17015.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 498

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 117/481 (24%), Positives = 215/481 (44%), Gaps = 35/481 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
             ++++W + DLRI DN+AL  A  ++D  ++ ++I   + W Q+  S RQ  F   SL+
Sbjct: 2   KGINILWFKKDLRIFDNEALCEAIKDND--ILPIYIIELDIWNQNTHSDRQWQFCKESLI 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEK 125
            ++ +L++ G            + I   D    + ++  L+ +++  +    +RD+ + +
Sbjct: 60  DLRNALAEIGQPLIIRTG----NVINIFDEISSKFKIKGLYSHQETGDWLTYKRDQKVRE 115

Query: 126 R-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             L   +I K F         S+    L        ++K   +NL++A LR   + +I L
Sbjct: 116 WALSKNIIWKEFLQ------FSVFRGNLDRNNWSKKWQKNSEKNLLKAPLR---INSINL 166

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
                PS+  + F +  +        G +  L  ++ F   K+  Y +    P  +    
Sbjct: 167 NIGEIPSD--KIFSFKKETCPGRMQGGRKKGLERMQYFFSNKLDSYSKDISSPEKSFDSC 224

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LSPY+  G +S ++ + R         I   + +    + L W   +   +   P + 
Sbjct: 225 TRLSPYICWGCISLKEIFKR-------ANISKNNNSRMLKSRLTWHCHFIQKLESEPELE 277

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + + P+ + I   K++ LL +W  G TGFP IDA MR LN  GW++ R+R +  SF  
Sbjct: 278 F-REYHPFFKNIR-EKNNELLYSWSSGNTGFPFIDACMRSLNFNGWINFRMRAMLMSFAS 335

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L + W+       ++ +D +   +    Q    +G  S+   RI+NP  QGK  DPQG
Sbjct: 336 YNLWLPWQDSGSELANKFVDYEPGIHWNQCQMQ--SGTTSINTNRIYNPIKQGKDHDPQG 393

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL---DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            FI+ W+PEL ++   +IH P        +    +NY  PI+D   +      +     K
Sbjct: 394 KFIKKWIPELKDISLNFIHEPWLLSIFNQEEYEKINYIRPIIDIPISTRTAKKKIQEITK 453

Query: 480 Q 480
           +
Sbjct: 454 K 454


>gi|156378195|ref|XP_001631029.1| predicted protein [Nematostella vectensis]
 gi|156218062|gb|EDO38966.1| predicted protein [Nematostella vectensis]
          Length = 498

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 126/498 (25%), Positives = 204/498 (40%), Gaps = 37/498 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   + W R  LR+ DN+ L  A   SD     +F       +   +S     F+  SL 
Sbjct: 1   MVNSVHWFRKGLRLHDNEPLRRAIEGSDTF-RGIFFLDKAAVKNAKVSPNGWRFLIESLR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + +SL +        Q       I+       Q  ++KL +    E    +RD  +++ 
Sbjct: 60  DLDQSLQKYNSRLFIIQG----QPIDVFPKLIKQWNISKLTFEYDSEPFPRQRDLAVKRI 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA-DLRSLPVPAI--- 182
            +   +      S  L     +   L+M +   P      + +V+       PV +I   
Sbjct: 116 AEKAGVDVIVCSSHTLYDIECIEQILEMNEGKPPVLFKDFEAIVRKLGPPENPVESITRK 175

Query: 183 ---RLTGPVTPSNIPR-----FFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYY 230
                  P+T ++  +       +   +  D     M+  GE+ AL+ L    ++K+   
Sbjct: 176 SFMNCICPITSTHSEKFGVPSLAELGIKPADVTCGDMWVGGEREALNRLG-ILEDKILGS 234

Query: 231 VEQRDIPAI----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
              ++           +QLSPYL  G LSP+  + +L   +V +   P     S   +LI
Sbjct: 235 NSSKNCDGSSVLFPSRTQLSPYLRFGCLSPKLYYKKLTGAYVKMQFSP--PPMSLYRQLI 292

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+  L +  P++       P   +I W ++      WKQG TGFP IDA MRQL   
Sbjct: 293 WREFFFTLASKNPNMDQVND-NPLCIQISWEENKDHFLCWKQGNTGFPWIDAIMRQLQKE 351

Query: 347 GWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R+    FL +  L + W  G   F    LD + + N+G W W  S        
Sbjct: 352 GWIHHLARLSVGCFLTRGCLWISWEEGLRAFEELQLDAEWSMNSGSWLW-LSCSAFFHGQ 410

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLP 459
              F P   GK+ DP G++IR ++PEL ++P +Y++ P +  D         +  +YP P
Sbjct: 411 IPWFCPVEVGKKLDPSGSYIRKYVPELRSMPLKYLYEPWTAPDDIQRAAMCVIGEDYPHP 470

Query: 460 IVDHKKACHHTLNQYYAA 477
           IVDH +     L +    
Sbjct: 471 IVDHIEQRKACLQRLKTV 488


>gi|123965634|ref|YP_001010715.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. MIT 9515]
 gi|123200000|gb|ABM71608.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 503

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/481 (25%), Positives = 205/481 (42%), Gaps = 35/481 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            +++++W + DLRI DN+AL  +  + D  +I +FI   E W Q   S RQ  F   SLL
Sbjct: 2   KNINILWFKKDLRINDNEALIESLKDRD--IIPIFIIEKEIWSQKTYSDRQWQFCKESLL 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125
            ++ SL+  G              IE  D       +  ++ +++       +RD+ + K
Sbjct: 60  DLRISLANIGQPLIIRTGK----VIEIFDQISNNFEIKAIYSHQETGDYLTYKRDQEVRK 115

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                ++I K +         S+    L      T ++K + + L     +  P+     
Sbjct: 116 WASMKKIIWKEYLQ------FSVFRGKLDRNNWSTKWKKNMERKLFTEPSKINPIE--ID 167

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
            G + P N   F D            G +  L  +  F   K+ YY +    P  +    
Sbjct: 168 PGEIPPDNFFCFKD---DFCKGRLKGGREIGLKRMEYFFSNKLSYYSKDISSPEKSFDSC 224

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPY+S G +S ++  ++               +    + L W   +   +   P + 
Sbjct: 225 SRLSPYISWGCISIKEIIHKANSIT-------NPNSKMLKSRLTWHCHFIQKLESEPELE 277

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             K F P+ +KI   KDSHLL+ W +G TGFP +DA MR LN  GW++ R+R +  SF  
Sbjct: 278 F-KEFHPYFQKIR-KKDSHLLKLWSEGKTGFPFLDACMRSLNFHGWLNFRMRAMLMSFAS 335

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L + W+       S+ LD +   +    Q     G  S+   RI+NP  QGK  DP+G
Sbjct: 336 YNLWIPWQESGSELASKFLDYEPGIHWNQCQMQ--AGTTSINVNRIYNPIKQGKDHDPKG 393

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL---DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            FI+ W+PE+ N P  ++H P        K   +  Y  PI++  +   +   +     +
Sbjct: 394 NFIKKWVPEIQNYPENFVHEPWLMEKFNSKEYENSEYIKPIINLSETTKNARKRIQEITQ 453

Query: 480 Q 480
           +
Sbjct: 454 R 454


>gi|312194378|ref|YP_004014439.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
 gi|311225714|gb|ADP78569.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
          Length = 447

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 132/454 (29%), Positives = 198/454 (43%), Gaps = 22/454 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L     DLR+ DN  L AA    +   + +F+      R    +  +  F+  SL  +
Sbjct: 2   TTLAVFTRDLRVHDNPMLTAAALAGE-HTVPLFVLDAAMARSGFATGARERFLAESLADL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            +SL + G            D +E +     +     +           RR+  L   L 
Sbjct: 61  DRSLRELGGRLVVR----AGDPVEQVCRVADEVDAGTVHLAADCSGYAQRREAALRSALA 116

Query: 129 HRVICKSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            R       D   V++ PG +       Y V+  + +       +  +   P   +RL  
Sbjct: 117 ERGRTLHCHDEAHVVVAPGRVTPAGRDHYAVFGAYHRRWEAAGWRRVI--APPARLRLPA 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
               +  P       ++    F  GE        ++ +E V  Y E+RD  A   TS+LS
Sbjct: 175 VDPGALPPIGGPAGGESAGGGFHGGETVGRRRAEEWLREGVEVYDERRDQLAADATSRLS 234

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL +G LS  +   +               A  ++ +L WR+F+  L+A  P+      
Sbjct: 235 PYLHLGCLSALELATQA---------GTGDAARDFVRQLAWRDFFHQLLAARPAAAHE-- 283

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                    W  D   L AW+ G+TG PI+DA MRQL T GW+ NR RMITASFL K L 
Sbjct: 284 -DYRDAHRTWRDDPAALDAWRSGHTGIPIVDAGMRQLLTEGWLPNRARMITASFLTKTLG 342

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DWR G  ++   LLD D+A+N+  WQW A TG D+ P  R+ NP  Q +RFDP G ++R
Sbjct: 343 LDWRAGAAHYTEHLLDADVANNSLNWQWVAGTGTDTRP-GRVLNPLRQAERFDPDGVYVR 401

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
             +PEL  +P + +H P    D+   +L+YP P+
Sbjct: 402 RHVPELAGLPGRQVHRPWRLPDRERAALDYPEPL 435


>gi|332662834|ref|YP_004445622.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100]
 gi|332331648|gb|AEE48749.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100]
          Length = 454

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 132/458 (28%), Positives = 205/458 (44%), Gaps = 30/458 (6%)

Query: 7   MSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------HGISARQ 57
           M++    +VW R DLR+ DN+AL  A  N+  +VI VFI     ++             +
Sbjct: 1   MTMKRRAIVWFRQDLRLHDNEALQDALRNA-YEVIPVFIFDERTFKGKTSFGFPKTGKYR 59

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           + FI  S+  +++SL +             D     L S   + + + +F NR+    E 
Sbjct: 60  AQFIIESVADLRQSLRKLNSDLIVRVGKTED----ILFSMAKECKTSWIFCNRERTAEEA 115

Query: 118 RRDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           R    LE RL        ++   +L     +         V+T FRK + + +   +  S
Sbjct: 116 RIQDELENRLWSIGQEMRYNRGKMLYYTADLPFPIQHTPDVFTQFRKEVERIVPVREPLS 175

Query: 177 LPVPAIR-LTGPVTPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKV 227
            P      L+      +IP   +      D          F  GE   +  L+ +  E  
Sbjct: 176 KPDRTFNPLSFEFPAGDIPSLEELGHNVDDFAKDPRAVLSFKGGETEGIKRLQYYLWETD 235

Query: 228 --YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
               Y E R+ +     +S+LSP+L+ G LSP+  ++ LK+   +         +    E
Sbjct: 236 LIKNYKETRNGLLGGDYSSKLSPWLAQGCLSPKLIYHELKKY--EAQRGANESTYWLFFE 293

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WR+F+R +   Y +               W ++  +LQ W  G TG P IDA M +L 
Sbjct: 294 LLWRDFFRFMGKKYGNKIFQIGGTRGQADPRWTENPQVLQKWIDGTTGVPFIDANMLELK 353

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+M NR R   ASFLVKDL ++W++G EYF S L+D D+ SN G W + A  G+D   
Sbjct: 354 HTGFMSNRGRQNVASFLVKDLNINWQMGAEYFESILIDYDVCSNWGNWNYIAGVGSDPRE 413

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
             R FN   Q KR+DP G +++HWLPEL ++P   +H 
Sbjct: 414 -DRYFNTLTQAKRYDPHGDYVKHWLPELADLPADKVHE 450


>gi|317419959|emb|CBN81995.1| Cryptochrome DASH [Dicentrarchus labrax]
          Length = 521

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 124/476 (26%), Positives = 210/476 (44%), Gaps = 31/476 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGISARQSHFIY 62
             +  LRNDLR  DN+  + A  N++  ++ ++   P  +              +  F+ 
Sbjct: 6   TIICLLRNDLRFQDNELFHWAQRNAEY-IVPLYCFDPRHYVGTYNYNLPKTGPFRLRFLL 64

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  ++ +L  KG      Q    +   + +        V+ + ++ +    E+  +K 
Sbjct: 65  DSIRDLRNTLLSKGSNLVVRQGKPEEVVADLIKQLG---SVSAVAFHEEVTSEELNVEKG 121

Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVP 180
           ++      +V   +   S L     +  H + ++  VYT FRKA+        +   P  
Sbjct: 122 VKDVCAQMKVKVHTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVETQSRVRPVFPTPEQ 181

Query: 181 AIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKFCKEKVY--YYVE 232
              L   +    IP   D     P       FP   GE   L  L+ +  +      Y E
Sbjct: 182 LKPLPSGLEEGAIPTAEDLQQTEPLTDPRSAFPCSGGESQVLARLKHYFWDTDAVATYKE 241

Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ +  +  +++ +P+L++G +SPR  ++++K+   +         +  + EL+WR+++
Sbjct: 242 TRNGLIGVDYSTKFAPWLAMGCISPRYIYHQIKQYEKERT--ANQSTYWVIFELLWRDYF 299

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           + +   Y +       +   + I W KD  L  AWK+G TG P +DA MR+L   G+M N
Sbjct: 300 KFVGVKYGNRLFQVKGL-QDKSIPWKKDMKLFNAWKEGQTGVPFVDANMRELAMTGFMSN 358

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND     R FN 
Sbjct: 359 RGRQNVASFLTKDLGLDWRMGAEWFEYLLIDHDVCSNYGNWLYSAGIGNDPREN-RKFNM 417

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461
             QG  +D  G ++R W+PEL  +    +H P +            L   YP PIV
Sbjct: 418 IKQGLDYDSNGDYVRQWVPELQGIKGADVHTPWTLSTAALSHAHVSLGETYPNPIV 473


>gi|261855905|ref|YP_003263188.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
           c2]
 gi|261836374|gb|ACX96141.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
           c2]
          Length = 507

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 111/481 (23%), Positives = 197/481 (40%), Gaps = 31/481 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW + DLR++D+ AL  A       V+ ++I  PE W+Q  +S RQ  F+ A L ++
Sbjct: 1   MNVVWFKRDLRLSDHTALARAAK--QGPVLLLYILEPELWQQPDMSERQFRFLTACLDEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127
           +     + I F         +++E L S   +  +T L+ +++        RD+ + +  
Sbjct: 59  KTVAQDRSIHFVIK----VGEAVEVLTSLHQKYAITALWSHQETGNGWTFARDQRVSRWC 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           Q+  I              ++            + + + Q + +       +     + P
Sbjct: 115 QYHHIPWHEPAQH-----GVVRRLANRSGWAARWYRQMKQPIAELPPVIHSIDEPSDSWP 169

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
                     +        +   G   AL +L  F  E+   Y      P  A +  S+L
Sbjct: 170 SPADLGWVNAE-----TAQIQSGGRSRALGLLHDFLHERGETYARAMSSPVTAFERCSRL 224

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-------ELIWREFYRHLMAFY 298
           SP+L+ G +S R+ +  ++   + L+++P +    W +        L W   +   +   
Sbjct: 225 SPHLAFGTVSIREVFQAVEARKLALMMQPPTERGMWPSALRSFSGRLRWHCHFIQKLEDE 284

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +        +    E   +    +AW+ G TG+P++DA MR L   GW++ R+R +  
Sbjct: 285 PRIEFCNLHPAYEGLRESEFNPAFFEAWQAGRTGYPMVDACMRALKATGWLNFRMRAMVM 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L + WR    Y      D +   +    Q    +G   +   RI+NP  QG   
Sbjct: 345 SFASYHLWLHWRQPALYLARMFTDYEPGIHYSQAQMQ--SGTTGINTLRIYNPIKQGIDH 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP+G FIR W+PEL ++   +IH P           NYP PIVD  +A      + Y  +
Sbjct: 403 DPEGVFIRRWVPELMDLDRTWIHTPWLAPSPP---TNYPRPIVDEVQARKAAAEKIYQLR 459

Query: 479 K 479
           K
Sbjct: 460 K 460


>gi|254438241|ref|ZP_05051735.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
           307]
 gi|198253687|gb|EDY78001.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
           307]
          Length = 511

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 120/470 (25%), Positives = 199/470 (42%), Gaps = 29/470 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A +  +VW + DLRI D+  L  A   S+A +I ++I  PE W+Q   S R  HFI+  L
Sbjct: 2   AQTPRIVWFKRDLRINDHGPLLTASQ-SNAPIIPLYIVEPEYWKQPFASRRHWHFIHDCL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124
             +  +L++ G            D+ E +    L+  V+ ++ + +   +   +RD  +E
Sbjct: 61  CDLDSALAEMGQNLIVK----VGDACEVIKELHLEHHVSDVYAHEETGNLWTYKRDIAVE 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           K   +  I       +   P + +   L+    ++  R A +   +      LP      
Sbjct: 117 KLCLNDGIA------LHTSPTNGVVRRLRSRDDWSKIRNARMAEKILPKPNMLPSFPSCR 170

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GT 242
           +  +   N P F D P   I  +   G + A+  LR F   +   Y+     P +     
Sbjct: 171 SDVLPAKNGPIFCDIP---IGTVQKGGRKQAVADLRSFLNYRSREYLYHISAPDLSEFHC 227

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG----AFSWLNELIWREFYRHLMAFY 298
           S+LS +L+ G LS R+    + +    L    K        ++ + L WR  +   +   
Sbjct: 228 SRLSAHLAWGTLSVREVAQSIIKRRSQLSPDEKKSFGRNLTAFGSRLAWRCHFVQKIEDQ 287

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +        +    E   +    QAW +G TG+P +DA MR L   GW+  R+R +  
Sbjct: 288 PEIETHCMHPAFEGLREDEHNDLHFQAWARGQTGYPFVDACMRNLTAEGWITFRMRAMLV 347

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF    L +DWR+  ++      D +   +    Q    +G   +   R++NP  Q    
Sbjct: 348 SFASYQLWLDWRVTGDHLARLFTDYEPGIHYSQLQMQ--SGVTGINTMRVYNPIKQSMEH 405

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVD 462
           DP G+FIR W+PEL NVP ++IH P  W           L  +YP PI++
Sbjct: 406 DPSGSFIRKWVPELKNVPDEFIHEPWKWKKTLIDNCDFTLGQDYPEPIIE 455


>gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo]
          Length = 530

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 133/494 (26%), Positives = 208/494 (42%), Gaps = 32/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQV 68
            +   R  LR+ DN AL AA  +S+  V  V+I           I A + HF+  SL  +
Sbjct: 5   TIHLFRKGLRLHDNPALLAALQSSEV-VYPVYILDRAFMTSSMHIGALRWHFLLQSLEDL 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + SL Q G      Q     +    +  +  +  +T++  + + E      +  +    +
Sbjct: 64  RSSLCQLGSCLLVIQG----EYDAVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRALGE 119

Query: 129 HRV-ICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKAL-IQNLVQADLRSLPVPAIRLT 185
                  S     L     IL  +       Y  F   L +    +  +R+L     +  
Sbjct: 120 ELGFEVLSLMGHSLYNTQRILELNGGTPPLTYKRFLHILSLLGDPEMPIRNLTAEDFQRC 179

Query: 186 GPVTPS-------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK---VYYYVEQRD 235
            P            +P     P ++I P +  GE   L  L +   ++   V  + + + 
Sbjct: 180 SPPELCLAECYRVPLPTDLKIPPESISP-WRGGESEGLQRLEQHLADRSGWVASFTKPKT 238

Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +P   +  T+ LSPY S+G LS R  + RL   +            S   +L+WREF+  
Sbjct: 239 VPNSLLPSTTGLSPYFSMGCLSVRSFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFFYT 297

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           + +  P+        P   +I W +D+  L  WK   TGFP IDA M QL   GW+H+  
Sbjct: 298 VASATPNFTKM-AGNPICLQIRWYEDAERLHRWKTAQTGFPWIDAIMTQLRQEGWIHHLA 356

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S       Y RIF P 
Sbjct: 357 RHAAACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMW-LSASAFFHHYTRIFCPV 415

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
             G+R DP+G +IR +LP L N P++YI+ P +  ++        +  +YP P+VDHK+A
Sbjct: 416 RFGRRTDPEGQYIRKYLPILKNFPSKYIYEPWTASEEEQKQAGCIIGRDYPFPMVDHKEA 475

Query: 467 CHHTLNQYYAAKKQ 480
             H L      +++
Sbjct: 476 SDHNLQLMKQVREE 489


>gi|110825715|sp|Q38JU2|CRYD_SOLLC RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
           AltName: Full=Cryptochrome-3; Flags: Precursor
 gi|98467788|gb|ABB01166.2| cryptochrome 3 [Solanum lycopersicum]
          Length = 577

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 133/488 (27%), Positives = 222/488 (45%), Gaps = 48/488 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQSHFIY 62
           V +VW RNDLR+ DN+AL  A  +S+A ++ V+   P  +            A ++ FI 
Sbjct: 79  VAIVWFRNDLRVLDNEALLRAWVSSEA-ILPVYCVDPRLFGTTHYFGMPKTGALRAQFII 137

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L  ++++L ++G+          D     + S     +   ++ +++    EV+ +K+
Sbjct: 138 ECLNDLKRNLVKRGLDLLIQHGKPED----IVPSLAKAYKAHTVYAHKETCSEEVKVEKM 193

Query: 123 LEKRLQHRV-----------------ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
           + + LQ  V                   +    S +     +      +  VYT FRK++
Sbjct: 194 VTRNLQKLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSV 253

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ----AIDPMFPIGEQNALHILRK 221
                  +   LP             ++P+  +   Q    +    F  GE  AL  +  
Sbjct: 254 EYKSKVRNCTKLPTSFGPPPEVGDWGHVPQVSELGLQQEKVSKGMNFVGGESAALGRVHD 313

Query: 222 FCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
           +  +K     Y E R+ +     +++ SP+L+ G LSPR  +  +K    + L       
Sbjct: 314 YFWKKDLLKVYKETRNGMLGADYSTKFSPWLASGSLSPRFIYEEVKRYEKERL--SNDST 371

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
           +  L ELIWR+++R L     ++   +   P    I W++D  +  AW++G TG+P+IDA
Sbjct: 372 YWVLFELIWRDYFRFLSIKLANLLF-QAGGPQKVNINWSQDQTMFDAWRRGQTGYPLIDA 430

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  
Sbjct: 431 NMKELAATGYMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGV 490

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           GND     R F+   Q + +DP+G F+ +WLPEL  +P +  H+P          + Y  
Sbjct: 491 GNDPRE-DRYFSIPKQAQNYDPEGEFVAYWLPELRALPREKRHSP---------GMMYLN 540

Query: 459 PIVDHKKA 466
           PIV  K  
Sbjct: 541 PIVALKHG 548


>gi|149637939|ref|XP_001508613.1| PREDICTED: similar to cryptochrome 1 [Ornithorhynchus anatinus]
          Length = 577

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 109/449 (24%), Positives = 179/449 (39%), Gaps = 38/449 (8%)

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L  +  +L +        +        +       +  + KL      E     
Sbjct: 14  RFLLQCLEDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNIAKLSIEYDSEPFGKE 69

Query: 119 RDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRS 176
           RD  ++K      +         L      L+  +++     P      Q L+ + D  +
Sbjct: 70  RDAAIKKLASEAGVEVIVRISHTLYE----LDKIIELNGGQPPLTYKRFQTLISRMDPLA 125

Query: 177 LPVPAI------RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKF 222
           +PV  I      +   P++  +  +       +  F        ++P GE  AL  L + 
Sbjct: 126 MPVETITAEVMGKCMTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERH 185

Query: 223 CKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            + K +    +R            + LSPYL  G LS R  + +L + +  +  K  S  
Sbjct: 186 LERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPP 244

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S   +L+WREF+       P     +   P   +I W+++   L  W +G TGFP IDA
Sbjct: 245 LSLYGQLLWREFFYTAATSNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDA 303

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S
Sbjct: 304 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LS 362

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KND 451
             +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  
Sbjct: 363 CSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKAAKCI 422

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           + +NYP P+V+H +A    + +     +Q
Sbjct: 423 IGVNYPKPMVNHAEASRLNIERMKQIYQQ 451


>gi|271963152|ref|YP_003337348.1| deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
           43021]
 gi|270506327|gb|ACZ84605.1| Deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
           43021]
          Length = 425

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 141/457 (30%), Positives = 218/457 (47%), Gaps = 37/457 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V    DLR+ D+ A  AA      +V+ +F+  P     H     ++ F+  SL 
Sbjct: 1   MDTVIVLFNRDLRVHDHPA-LAAACADAWRVVPLFVIDPGVPGGH-----RAGFLAESLD 54

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ SL ++G      Q     +++        +     ++ +        RR++ L + 
Sbjct: 55  DLRGSLRERGGDLVVRQGDPVAETLR----LARELPAQAVYVSADVSALAQRRERRLAEE 110

Query: 127 LQ-HRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            + HR+  ++F    ++PP ++  +     Y+V+TP+ +       +  L +     I  
Sbjct: 111 CERHRMEFRAFPGVTIVPPDALRPSGGGDHYRVFTPYWRVWSGQRRREVLGAPAKVRIPE 170

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                P  +     +       +F  GE  A   +R++ K  V  Y +  D  A   TS+
Sbjct: 171 GLEAGPLPVAGHEPHG------LFRGGETVARERMRQWLKYCVEDYADGHDDLAGNRTSK 224

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LSP +                      ++ +L WR+F+  +   +P +   
Sbjct: 225 LSPYLRFGCLSPLEL------------ESLSENGDDFVRQLCWRDFFHQVTRAFPRINRD 272

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             + P  +  EW  D    QAWK+G TG PI+DA MRQL   GWMHNR RM+T+SFLV+ 
Sbjct: 273 -DYRPQGQ--EWRDDEDAAQAWKEGRTGVPIVDAGMRQLLAEGWMHNRARMVTSSFLVRR 329

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L VDWR+G E+F   LLDGD+++N G WQW A TGND+ P  RI NP  Q +RFDP+G +
Sbjct: 330 LRVDWRVGAEHFFDLLLDGDVSNNYGNWQWVAGTGNDTRP-NRIVNPVRQARRFDPEGEY 388

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           IR +LPEL+ VP + I+ P            YP P+V
Sbjct: 389 IRRYLPELDAVPVKMIYEPWRMSTGIR---GYPAPLV 422


>gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome 4 [Taeniopygia guttata]
          Length = 527

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 133/494 (26%), Positives = 205/494 (41%), Gaps = 33/494 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQV 68
            +   R +LR+ DN  L AA  +S+A +  V+I           I A + +F+  SL  +
Sbjct: 5   TIHLFRKELRLHDNPVLLAALESSEA-LYPVYILDRAFLTSSMHIGALRWNFLLQSLEDL 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-L 127
            K+L Q G      Q     +    L  +  +  +T++  + + E      +  +++   
Sbjct: 64  HKNLGQLGSCLLVIQG----EYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGA 119

Query: 128 QHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKAL---------IQNLVQADLRSL 177
           +      S     L     IL+ +       Y  F   L         ++NL   D +  
Sbjct: 120 ELGFEVLSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPELPVRNLTAEDFQRC 179

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD 235
             P   L               P       +  GE   L  L +   ++ +   + + R 
Sbjct: 180 RAPEPGLAECYRVPLPVDLKISPESLSP--WRGGETEGLRRLEQHLIDQGWVTSFAKPRT 237

Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P   +  T+ LSPY S+G LS R  + RL   +            S   +L+WREF+  
Sbjct: 238 SPNSLLPSTTGLSPYFSMGCLSVRTFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFFYT 296

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           + +  P+        P   +I W KD+  L  WK   TGFP IDA M QL   GW+H+  
Sbjct: 297 VASATPNFT-QMAGNPICLQISWYKDAERLHKWKTAKTGFPWIDAIMTQLRQEGWIHHLA 355

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R   A FL + DL + W  G + F   LLD D + N G W W  S       Y RIF P 
Sbjct: 356 RHAVACFLTRGDLWISWEEGMKVFEELLLDADYSINAGNWMW-LSASAFFHQYTRIFCPV 414

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKA 466
             GKR DPQG +IR +LP L N P++YI+ P +  ++        +  +YP P+V+HK+A
Sbjct: 415 RFGKRTDPQGNYIRKYLPILKNFPSKYIYEPWTASEEEQKLAGCIIGQDYPFPMVNHKEA 474

Query: 467 CHHTLNQYYAAKKQ 480
             H L      +++
Sbjct: 475 SDHNLQLMKQVREE 488


>gi|147902555|ref|NP_001084438.1| cryptochrome DASH [Xenopus laevis]
 gi|82239825|sp|Q75WS4|CRYD_XENLA RecName: Full=Cryptochrome DASH
 gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis]
          Length = 523

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 127/477 (26%), Positives = 214/477 (44%), Gaps = 33/477 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGISARQSHFIY 62
           V +  LRNDLR+ DN+ L+ A  N+D +++ ++   P        +        +  F+ 
Sbjct: 7   VIICLLRNDLRLHDNEVLHWAHRNAD-QIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLL 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDK 121
            S+  ++ +L +KG      +        E ++    Q   V+ +  + +    E   + 
Sbjct: 66  ESVRDLRITLKKKGSNLLLRRGKPE----EVIEDLVKQLGNVSAVTLHEEATKEETDVES 121

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            +++   +  +  ++F  S L     +   H   +  VYT FRKA+           +P 
Sbjct: 122 AVKQACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTFQMPD 181

Query: 180 PAIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKFCKEKV--YYYV 231
               L   +   ++P   D+    P       FP   GE  AL  L  +  E      Y 
Sbjct: 182 KLKPLPSGLEEGSVPSHEDFDQQDPLTDPRTAFPCSGGESQALQRLEHYFWETNLVASYK 241

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           + R+ +  +  +++ +P+L++G +SPR  + ++ +   +         +  + EL+WR++
Sbjct: 242 DTRNGLIGLDYSTKFAPWLALGCVSPRYIYEQIGKYEKERT--ANQSTYWVIFELLWRDY 299

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +R +   Y         +   + I W +D  L  AWK+G TG P +DA MR+L   G+M 
Sbjct: 300 FRFVALKYGRRIFFLRGLQDKD-IPWKRDPKLFDAWKEGRTGVPFVDANMRELAMTGFMS 358

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND     R FN
Sbjct: 359 NRGRQNVASFLTKDLGIDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPREN-RKFN 417

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461
              QG  +D  G +IR W+PEL  +     H P +  + +       L   YP PIV
Sbjct: 418 MIKQGLDYDSGGDYIRLWVPELQQIKGGDAHTPWALSNASLAHANLSLGETYPYPIV 474


>gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 562

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 137/560 (24%), Positives = 210/560 (37%), Gaps = 84/560 (15%)

Query: 1   MKATT---AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ 57
           M A +     +  L+W R  LR+ DN AL A    + +    VF+  P   +   + A +
Sbjct: 1   MTAPSVSNGTTRSLIWFRKALRVHDNPALAAGIARAKSA-QPVFVLDPWFCKPSRVGANR 59

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+  SL  +  +L ++G                 L   C   +V  + +    E    
Sbjct: 60  MRFLLQSLRDLDATLRERGSSLLVLHGEPRV----VLPRACKTWKVDLVTWEHDIEPYAK 115

Query: 118 RRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQ---- 171
            RD  +   L+   V C S     L     +L     +    Y+ F K + +        
Sbjct: 116 MRDTAVRGALERAGVECASSSGHTLYDVEEMLAKCHGKPPTTYSQFLKIVDKMGAPAAAL 175

Query: 172 ADLRSLPVP--------AIRLTGPVTPSNIPRFFDYPFQAI--DPMFP--IGEQNA---- 215
              +++P P           + G      IP   +  ++A+  D  F    GE       
Sbjct: 176 DAPKAMPAPFTGTAEETKELVAGVADAYGIPTLEELGYEAMHDDEGFQAIGGETEGLRRL 235

Query: 216 ---------------------------------------LHILRKFCKEKVYYYVEQRDI 236
                                                  +       K          D+
Sbjct: 236 RRQLSRTEWVHTFQKPDTNPTTLFHALGAKKPKPKSPFEIAARDAGSKNDATNTAANSDM 295

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG--AFSWLNELIWREFYRHL 294
                T+ LSPY+  G +SPR  ++ L         K +      S + +L+WREFY  +
Sbjct: 296 LMTPSTTALSPYMKFGCVSPRVFYHELNAVLAKFEGKGQPSQPPVSLMGQLMWREFYYLV 355

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            A  P+    +   P   +I WNKD  L  AW+   TGFP IDAAM QL   GW+H+  R
Sbjct: 356 GAGTPNFDKMEG-NPICRQIPWNKDRELFAAWENAQTGFPWIDAAMTQLRLEGWIHHLAR 414

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL V W  G + F   L+D D A NNG W W  S       YFR++ P  
Sbjct: 415 HAVACFLTRGDLFVHWEWGRDTFDRDLVDADWALNNGNWMW-LSCSCFFYQYFRVYGPHS 473

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKAC 467
             K++D  G +++H+LP L N+P +Y++ P              + ++YP PIVDH  A 
Sbjct: 474 FAKKYDKDGAYVKHYLPVLKNMPAKYVYEPWLAPLDVQKKAGCVVGVDYPAPIVDHATAS 533

Query: 468 HHTLN----QYYAAKKQSLL 483
              ++     Y A K  + +
Sbjct: 534 KACIDKIATAYAAHKDATAV 553


>gi|116072905|ref|ZP_01470170.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
 gi|116064431|gb|EAU70192.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
          Length = 496

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 121/477 (25%), Positives = 202/477 (42%), Gaps = 35/477 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ +VW + DLR  D++ L+ A       V+ +++  PE W+Q   S+RQ  F   SL+ 
Sbjct: 3   ALQIVWFKRDLRTVDHRPLFEASKCG--PVLPLYVVEPELWQQPDSSSRQWLFCRESLID 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126
           +Q++L++ G      +     D  + L+    Q  +  L+ + +   +   +RDK +   
Sbjct: 61  LQRALAEFGQPLVVRRG----DVADVLERARRQFGIDALWSHEETGNDWTYQRDKRVAAW 116

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +   I  +        P   +   L+    +    +  +   +   L +LP  A    G
Sbjct: 117 AKQHGIPWT------EIPQFGVTRRLKSRNGWAKRWETQMAEPITQPLTALPRLADLDPG 170

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
            +           P          G +      R F  ++V  Y      P  A  G S+
Sbjct: 171 AIPDLPHGSMAPDPCPHRQL---GGRRQGELEFRDFLNQRVERYCSSISSPNKAFTGCSR 227

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ G LS R+   + +            G  S+ + L W   +   +   PS+   
Sbjct: 228 LSAYLTWGCLSMREVLQQSRTMQ-------GRGVNSFGSRLHWHCHFIQKLEDEPSIEF- 279

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F P    I  + +   LQAW +G TG P +DA MR L   GW++ R+R +  SF   +
Sbjct: 280 QDFHPLMRGIR-DSNQDHLQAWAEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASYN 338

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG+  DP+G F
Sbjct: 339 LWLPWRQSGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGRDHDPEGRF 396

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           IRHW PEL  VP  YIH P       +L    P PIVD   +     ++ +A ++ +
Sbjct: 397 IRHWCPELREVPAIYIHEPW------ELGGGMPAPIVDVTTSMQAAKDRIWAVRRSA 447


>gi|189184449|ref|YP_001938234.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181220|dbj|BAG41000.1| deoxyribodipyrimidine photolyase, DNA photolyase [Orientia
           tsutsugamushi str. Ikeda]
          Length = 505

 Score =  320 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 141/503 (28%), Positives = 231/503 (45%), Gaps = 38/503 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYA 63
               + +VWLR +LR+ DNK    A  +S  K+I +FI      +       R+  F+  
Sbjct: 2   NMKKISIVWLRRNLRLEDNKPFAEALKSSK-KIIPIFIFDTTILQNFSNPLDRRLSFLAN 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           ++  +   L +            + +S+E +     +  +  ++ + +Y+   V RD+ +
Sbjct: 61  TIYNLNSELQELEGNLLVL----YGNSVEIIPKLIEKLNIQTIYADEEYDPENVIRDQKI 116

Query: 124 EKRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
              L+       +   D +LL PGSI+ H  Q Y  Y P+  A  Q L + +   +    
Sbjct: 117 TNLLEFNGKSKLELVCDHLLLKPGSIVTHKKQYYMRYNPYNTAFKQYL-RKNCSCIERSN 175

Query: 182 IRLTGPVTPSNIPRFFDYPFQ-------AIDPMFPIGEQ----------NALHILRKFCK 224
            RL   +             +       A + +  IG             A +IL  F +
Sbjct: 176 YRLDHRLVSLESIDLSSLNLKIINLNHGASEILNQIGYTYQKDNIWQPIKAKNILNNFIQ 235

Query: 225 EKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWNRL-----KEEFVDLLIKPKS 276
             +  Y       ++  +  +S +SPYL  G++S R+C+++      K    D  I    
Sbjct: 236 NNITSYRTNNTNQNLLYLNNSSTISPYLRFGLVSIRECFSKAIAADSKALITDEAIGKTE 295

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
               W++ LI REFY  L+  +P+    +    +   I W KD  +   + +G TG+P+I
Sbjct: 296 KEKGWIDGLIHREFYASLLFRFPNTVSEEFQDKYRNNIPWEKDLEIYCKFTEGKTGYPMI 355

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DA+++QL   GWMHN  R I A+F  K LL+DWR+GE +F   L+D +LASN G WQWAA
Sbjct: 356 DASIKQLLRDGWMHNLARTIVANFFTKYLLLDWRLGEHFFSQYLMDYELASNVGSWQWAA 415

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456
           S G D   + R+F P  QG++FD +  +I+ +LP L NV  + IH  H     +    NY
Sbjct: 416 SCGTDMEHFVRMFCPFAQGRKFDHEAKYIKKYLPNLENVSAKVIHDVHF----SKKYPNY 471

Query: 457 PLPIVDHKKACHHTLNQYYAAKK 479
             PI+D++ +   + N +   KK
Sbjct: 472 LTPIIDYQLSKDKSSNFFKQIKK 494


>gi|78777808|ref|YP_394123.1| deoxyribodipyrimidine photolyase [Sulfurimonas denitrificans DSM
           1251]
 gi|78498348|gb|ABB44888.1| Deoxyribodipyrimidine photo-lyase type I [Sulfurimonas
           denitrificans DSM 1251]
          Length = 445

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 211/474 (44%), Gaps = 41/474 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ DN  L         +V+ +FI      ++     ++  FI+  LL+++ 
Sbjct: 4   VLWFRRDLRVKDNPLLTL-----GGEVLPIFIFDENILKELSQDDKRVTFIFHYLLKLKS 58

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G+  +    +  +   E L  +       ++  +  Y+     RD  +  +L   
Sbjct: 59  DLQHIGLDLKIFYGTP-EAVFEHLSKF------DEVVASGDYDSYAKSRDLHISHKLH-- 109

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
              +   D+ +  P  IL      Y V+TPF K     L   DL+   +    L G  + 
Sbjct: 110 --FRYLHDTYIFKPKEILKDDGSPYFVFTPFYKKARVALHVKDLQEKKIAQNILIG--SD 165

Query: 191 SNIPRFFDYPFQAIDPMFP-IGEQN-------ALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                  D     +      IG +            L  F K+ +  Y + RD   +  +
Sbjct: 166 YEGITKVDIGITKLSLAIESIGFKAQNLNIIAPQKKLENF-KKNISKYSQMRDFLDVDIS 224

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LS  L  G +S R+    +        +K    +  ++ +LI+R+FY + +   P V 
Sbjct: 225 SSLSVDLRFGTISIREVLLEV--------LKLAEVSEPFIRQLIFRDFYAYALFHTPHV- 275

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             + +      IE   D     A+    TG PI+DA +R+L   G+MHNR+RM+ ASF  
Sbjct: 276 ESENYKYSFNGIE---DKEKFIAFCSAKTGVPIVDAGVRELLKTGYMHNRVRMVVASFFT 332

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           KDLL+ W+ GE +F   LLD D ASN   WQW+A TG D  PYFRIFNP +Q K+FD + 
Sbjct: 333 KDLLLPWQWGERFFAEHLLDYDKASNVLSWQWSAGTGVDPQPYFRIFNPYLQSKKFDKEA 392

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            +I+ ++ EL+ +  + IH     L  +    +YP PIV HK+A    +  +  
Sbjct: 393 LYIKRYVSELSTIEIKNIHKEEYLLCADI--KDYPKPIVTHKEASKRAVELFKK 444


>gi|56807956|ref|ZP_00365772.1| COG0415: Deoxyribodipyrimidine photolyase [Streptococcus pyogenes
           M49 591]
          Length = 381

 Score =  320 bits (820), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 145/389 (37%), Positives = 206/389 (52%), Gaps = 17/389 (4%)

Query: 87  FDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPP 144
           + D +   +    Q    T +++N         RD+   +  +   I   ++ D  L   
Sbjct: 2   YGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGS 61

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
             I+N + Q YKV+TP+ +       +  ++ + +   R     TP ++ R  +  F+  
Sbjct: 62  QEIINQSGQPYKVFTPYYRXWQNYPKETPIK-VELSQGRWLNLETPDDVLRTVE-SFKDE 119

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
                     A   L +F ++++  Y   RD PA  GTS+LSP+L IG +  R  ++ ++
Sbjct: 120 KYQDVATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR 179

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
           +           G  ++L EL WR+FY  +   YP     +P      +IEW  +    Q
Sbjct: 180 QA------PNSLGQATFLKELAWRDFYNMVYVAYPDQ-KTQPIQKAFSQIEWVNNPDWFQ 232

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            WK+G TG+PI+DAAM QL   GWMHNRLRMI ASFL KDLL DWR+GE+YF  QL+D D
Sbjct: 233 LWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRLGEQYFQQQLIDYD 292

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            ASN GGWQWAASTG D+VPYFRIFNP  QGKRFDP+G FI+ +LP+L +VP +Y+H P 
Sbjct: 293 AASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPKGEFIKAYLPQLEHVPEKYLHEPW 352

Query: 445 SWLD------KNDLSLNYPLPIVDHKKAC 467
                        +  +Y  PIVDH K  
Sbjct: 353 KMPKNLQESVSCIIGTDYAQPIVDHAKQR 381


>gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
           1055/1]
 gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
           1055/1]
          Length = 550

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 135/516 (26%), Positives = 211/516 (40%), Gaps = 53/516 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSHFIYAS 64
           V + W RN LR  DN  L  AC  S++ ++ +++  PE         R    +++F+  S
Sbjct: 11  VAIHWFRNGLRFHDNPCLLDACQKSES-LLPIYVVDPEFPFAQTAGCRAGTIRANFLLES 69

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK--- 121
           + +V + L + G             S E L       +   LFY ++       +D    
Sbjct: 70  INEVDEKLRKMGSQLVV----VLGKSHEVLPEIVATTQAKALFYEQEAAAPVREQDAETI 125

Query: 122 -LLEKRLQHRVI-----CKSFDDSVLLPPGSIL--NHALQMYKVYTPFRKALIQNLVQAD 173
             ++ RL+          +++    L P    L           Y  F K   +  V  +
Sbjct: 126 QAIKNRLKRDGKNYECKFEAYATHTLHPMERYLAQCKDHTAPSTYGSFTKIFNKMSVAKE 185

Query: 174 L------RSLPVPAIRLTGP--VTPSNIPRFFDYPFQAIDP----------MFPIGEQNA 215
           +       SLP  +++L          +P   D  + A              F  GE  A
Sbjct: 186 VNEVKEVPSLPNKSVKLLEKSFAEALRMPTLKDLGYAAAADDMKNSGKGGYAFAGGENAA 245

Query: 216 LHILRKFCKEKVY--YYVEQRDIPA---IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           + +L K      +   + + +  P       T+ LSPY+  G +SPR+ ++ L + +   
Sbjct: 246 IELLAKNMARSQWVATFEKPKTSPNDATRPSTTALSPYVKHGCISPRRFYHELSKVYSKY 305

Query: 271 LIKPKS-GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
             K  S    S   +L+WR+F   +    P+        P   +I W+ D  LL AWK  
Sbjct: 306 NSKETSKPPVSLHGQLMWRDFNYLVGYSTPNFDKMID-NPIARQIPWDDDPDLLLAWKMS 364

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASN 388
            TG+P IDA M QL   GW+H+  R   A FL + DL   W  G   F   L+D D + N
Sbjct: 365 KTGYPYIDAIMTQLRETGWIHHLARHSVACFLTRGDLWQSWEDGATVFEEYLIDADWSIN 424

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
           N  WQW  S       YFR ++P   GK+ DP G +IR WLP+  ++P +YI+ P     
Sbjct: 425 NFNWQW-LSCTAHFYQYFRCYSPIAFGKKTDPNGDYIRKWLPQFKDMPAKYIYEPWEAPI 483

Query: 449 KND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +        +  NYP PIVDHK    + +++   A 
Sbjct: 484 ELQKKVGVIVGENYPHPIVDHKLVSKNNMSRMKEAY 519


>gi|294084365|ref|YP_003551123.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663938|gb|ADE39039.1| deoxyribodipyrimidine photolyase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 515

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 114/487 (23%), Positives = 197/487 (40%), Gaps = 36/487 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +H+VW + DLR+ D+  L AA       V+ +++  P  W Q  +S R   F+  +L  +
Sbjct: 1   MHVVWFKKDLRVWDHAPLVAASAAG--AVLPIYVVEPALWAQPDMSYRHYAFLGETLASL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127
            +SL++ G     +      D    L     +  +T L+ + +        RD  +++  
Sbjct: 59  DESLTKLGQPLVIY----AGDMPSVLAGIHQKYGITALYSHEETGNGWTYARDLAVQEWC 114

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           + H      F    +  P       L+  + +      ++Q  V      L    I+   
Sbjct: 115 KDHHCPWHEFAQYGVHRP-------LRSRRGWAGKWDKMMQADVVPAPDHLSSVGIKGVP 167

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
             + S +    D      +     G   A+ +L+ F   +   Y  +   P  A    S+
Sbjct: 168 LPSASALGLVDD----ECNERQKGGRNEAIALLKSFLASRGQKYRYEMSSPVTAADSCSR 223

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-------NELIWREFYRHLMAF 297
           LS +L+ G +S R+ +   +   + +         +W        + L W   +   +  
Sbjct: 224 LSAHLAFGAVSLREVFQASRRRQMAIRDSGTGNKRAWQNALKSFESRLHWHCHFMQKLED 283

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL--LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            P++   +PF    E ++         L AW +G TG+P++DA MR L   GW+  R+R 
Sbjct: 284 EPAIEF-RPFHSAYESLDKTHADAASRLTAWVEGRTGYPLVDAVMRSLTATGWLTFRMRA 342

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +T SF    L +DWR    +     +D +   +    Q  +      +   RI+NP  Q 
Sbjct: 343 MTMSFASYHLWLDWRSPARHLARSFIDYEPGIHYSQCQMQSGIT--GINTIRIYNPIKQS 400

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +  DPQG FIR W+PEL ++    IH P    D+     +YP PIVD K A      Q +
Sbjct: 401 QDQDPQGIFIRRWVPELRHISDNLIHTPWIRPDQA---PDYPAPIVDEKIARKSASQQMH 457

Query: 476 AAKKQSL 482
             +K S+
Sbjct: 458 DIRKSSM 464


>gi|307292892|ref|ZP_07572738.1| DNA photolyase FAD-binding [Sphingobium chlorophenolicum L-1]
 gi|306880958|gb|EFN12174.1| DNA photolyase FAD-binding [Sphingobium chlorophenolicum L-1]
          Length = 458

 Score =  319 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 135/456 (29%), Positives = 214/456 (46%), Gaps = 36/456 (7%)

Query: 34  DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93
           +  VI V++   +  RQ  +      +++ SL  +  SL +KG      Q     DS+E 
Sbjct: 27  EGPVIPVYVLDDQAPRQWKMGGASRWWLHHSLANLDASLREKGSRLILRQG----DSVEQ 82

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ 153
           L +   +    ++     YE      +K + KRL         D  +LLPPG +      
Sbjct: 83  LVAIAEEVGAGRVHALHHYEPWWRNAEKAVAKRLD----LCLHDGGLLLPPGVVRTGGGS 138

Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF----- 208
            Y++YTPF +A+++ +  A     P    R+  P          D+    + P +     
Sbjct: 139 SYRIYTPFARAVMEQMPPATPVRAPS---RIDAPSDWPKSDSLADWGLLPVKPDWAVAFS 195

Query: 209 ---PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
                GE  A   +  F  E    Y   R++P+ +GTS+LSP+L  G +SP   W+R+  
Sbjct: 196 SDWTPGEAGARTNVAAFLDEA-ADYDVARNLPSQEGTSRLSPHLHFGEVSPAYVWHRI-- 252

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN---KDSHL 322
                 +     A ++L ELIWR++    +   P+        P  + + W    +    
Sbjct: 253 ------VGTGDDATTFLKELIWRDYAHTQIWAMPTYGSENA-RPAFDAMPWRDLREAGED 305

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
            +AW+ G TG+PI+DA MRQL   GWMHNR+RMI ASFL+K LL+DWR G  +F   L+D
Sbjct: 306 FKAWQSGRTGYPIVDAGMRQLWATGWMHNRVRMIAASFLIKHLLIDWRHGARWFWDTLVD 365

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
              A+N+  WQW A +G D+  + RI  P  Q ++FD  G +IR W+PEL ++  ++IH 
Sbjct: 366 ASYANNSVNWQWVAGSGVDANIFSRIMAPLTQSEKFDAAG-YIRTWVPELAHLDDEHIHD 424

Query: 443 PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P +   +     +YP   + H++     L  +   K
Sbjct: 425 PDAHGIRP---PDYPAKRIGHREGRERALAAWGHGK 457


>gi|326912139|ref|XP_003202411.1| PREDICTED: cryptochrome-1 [Meleagris gallopavo]
          Length = 611

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 109/445 (24%), Positives = 179/445 (40%), Gaps = 30/445 (6%)

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L  +  +L +        +        +       +  + KL      E     
Sbjct: 43  RFLLQCLEDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWSIAKLSIEYDSEPFGKE 98

Query: 119 RDKLLEKRLQHRVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQN-LVQADLR 175
           RD  ++K      +         L     I+  +  Q    Y  F+  + +   ++  + 
Sbjct: 99  RDAAIKKLASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVE 158

Query: 176 SL-PVPAIRLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEK 226
           ++ P    + T PV+  +  +       +  F        ++P GE  AL  L +  + K
Sbjct: 159 TITPEVMQKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERK 218

Query: 227 VYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
            +    +R            + LSPYL  G LS R  + +L + +  +  K  S   S  
Sbjct: 219 AWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLY 277

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            +L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M Q
Sbjct: 278 GQLLWREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQ 336

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  + 
Sbjct: 337 LRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSF 395

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLN 455
              +F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      K  + +N
Sbjct: 396 FQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVN 455

Query: 456 YPLPIVDHKKACHHTLNQYYAAKKQ 480
           YP P+V+H +A    + +     +Q
Sbjct: 456 YPKPMVNHAEASRLNIERMKQIYQQ 480


>gi|302745160|gb|ADL62683.1| cryptochrome 3 [Phreatichthys andruzzii]
          Length = 475

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 119/481 (24%), Positives = 189/481 (39%), Gaps = 40/481 (8%)

Query: 28  AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF 87
            A + +D  V  V+I  P       +   +  F+  SL  +  SL +        +    
Sbjct: 1   EALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLDSLEDLDTSLRKLNSRLFVVRGQPT 59

Query: 88  DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGS 146
           D           +  VT+L +    E     RD  + K  Q   V     +   L  P  
Sbjct: 60  D----VFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQEYGVQTVVRNTHTLYNPDR 115

Query: 147 ILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRL-----------TGPVTPSNIP 194
           I+    +M     P      Q +V + +L   P+P I                     +P
Sbjct: 116 II----EMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQMARCRTQISDNHDEHYGVP 171

Query: 195 RFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-----GTSQLS 246
              +  F+       ++  GE  A+  L K    K +    +R             + LS
Sbjct: 172 SLEELGFKTQRDSSHVWKGGETEAMERLNKHLDRKGWVANFERPRIITAQSLFASPTGLS 231

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  G LS R  +  L+E F+ L  +  S   S   +L+WREF+       P+    + 
Sbjct: 232 PYLRFGCLSCRVFYYNLRELFMKLR-RRSSPPLSLFGQLLWREFFYTAGTNNPNFDRMEG 290

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DL 365
             P   +I W+ +   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL
Sbjct: 291 -NPICVQIPWDHNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDL 349

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W  G + F   LLD D + N G W W  S       +F  + P   G+R DP G +I
Sbjct: 350 WISWESGMKVFEELLLDADWSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYI 408

Query: 426 RHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R ++P+L + P  YI+ P +  +         + ++YP P+++H ++    + +     +
Sbjct: 409 RRYIPKLKDYPNCYIYEPWNAPESVQKAANCIVGVDYPKPMINHAESSRLNIERMKQVYQ 468

Query: 480 Q 480
           Q
Sbjct: 469 Q 469


>gi|226326776|ref|ZP_03802294.1| hypothetical protein PROPEN_00636 [Proteus penneri ATCC 35198]
 gi|225204613|gb|EEG86967.1| hypothetical protein PROPEN_00636 [Proteus penneri ATCC 35198]
          Length = 256

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 164/253 (64%), Positives = 191/253 (75%)

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           + +Y + RDIPA+ GTS+LSPYLSIG+LS RQC+NRL +   + L    SGAF W NELI
Sbjct: 1   MPHYAKWRDIPAVDGTSRLSPYLSIGLLSIRQCFNRLYQTEPNFLENNTSGAFVWFNELI 60

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREFY+HL+   P++C    F  WTEKI W  +     AW QG TGFPIIDAAMRQLN  
Sbjct: 61  WREFYQHLIVANPNLCKHIAFQLWTEKINWRNNQDEFNAWTQGSTGFPIIDAAMRQLNQT 120

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GWMHNRLRM+TASFL+KDLL+DWR GE YFMSQL+DGD ASNNGGWQWAASTG D+VPYF
Sbjct: 121 GWMHNRLRMLTASFLIKDLLIDWRWGERYFMSQLIDGDFASNNGGWQWAASTGTDAVPYF 180

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           RIFNPT QG++FDP G FIRHWLPEL +VP++YIH PH W  K +  L+YPLPIVDH KA
Sbjct: 181 RIFNPTTQGRKFDPDGEFIRHWLPELASVPSRYIHTPHEWAAKTNNPLDYPLPIVDHAKA 240

Query: 467 CHHTLNQYYAAKK 479
               +  Y   KK
Sbjct: 241 RIRAIESYEKDKK 253


>gi|222478726|ref|YP_002564963.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
 gi|222451628|gb|ACM55893.1| DNA photolyase FAD-binding [Halorubrum lacusprofundi ATCC 49239]
          Length = 465

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 137/478 (28%), Positives = 211/478 (44%), Gaps = 26/478 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R D R  DN  L AA       V+ VF+   + +    + ARQ  F    + ++
Sbjct: 1   MQLFWHRRDPRTRDNVGLAAAARTG--TVVPVFVYDTDLFGT--MGARQRAFFLRHVKRL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++   + G            D  + L     +     +FYN  Y      R + +E  L+
Sbjct: 57  KERYREFGSDLVVR----AGDPEKVLVDLADEYDAEAVFYNEYYRPARRNRQRAVEGALE 112

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V   +  D+VL+ PG +     + Y  +  F                P P       
Sbjct: 113 GFGVETNARTDAVLVDPGRL----EERYANHGRFHDEWE---TVPKPEPSPEPDADALVN 165

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ------G 241
           +         D        +   G + A      F +  +  Y + RD  A         
Sbjct: 166 MRDEKTVSEIDPDIDPDIDLPATGYRAARERFDGFLEHGIRSYADTRDDLARAVEAPTHA 225

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S++SPYL+ G +  R+ W    + F       +     + +EL WRE   HL+ + P +
Sbjct: 226 VSRMSPYLATGAIGIREMWADATDAFEAATGDERRNVDKYRDELSWREQMYHLLYYTPDL 285

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            +   +  +  +I W +D    +AW +G TG+P++DA MRQLN  G++HNR R + ASFL
Sbjct: 286 AVAN-YKSFPNEIAWREDDTAFEAWTRGETGYPLVDAGMRQLNAEGYVHNRPRQVVASFL 344

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            K LL+DWR G  YF +QL+D D ASN+G WQW ASTG DSV   RIF+P  Q  ++D  
Sbjct: 345 TKHLLIDWRRGARYFTTQLIDHDHASNHGAWQWTASTGTDSV-DVRIFDPVAQMAKYDAD 403

Query: 422 GTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            TF++ ++PEL +VP + I      S +++  L+  YP PIVD  +        +  A
Sbjct: 404 ATFVKEYVPELRDVPAEEIVDWPTLSRVERETLAPEYPHPIVDRNEGYERAQRVFEEA 461


>gi|146276865|ref|YP_001167024.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555106|gb|ABP69719.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 470

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 138/474 (29%), Positives = 215/474 (45%), Gaps = 25/474 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+TDN  +  A       ++ VFI  PE  R   + A     +  ++    +
Sbjct: 7   ILWFRRDLRLTDNPMVREAAATG-RPLVPVFILDPETER---LGAAPKWRLGLAVEAFAQ 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L + G      +      ++E L     +     + ++R  E     RD+ ++  L+ +
Sbjct: 63  ALERLGSRLILRRGP----ALEVLGRLAAETGALGVRWSRLCEPGWRSRDEGVKAGLKRQ 118

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP-- 187
            I  +S     L  P  +       Y+V+TPF K++    V A + +          P  
Sbjct: 119 GIAAESHAGHTLFEPWEVRTGQGGFYRVFTPFWKSVKDRPVPAPVAAPAGLRAPTVWPRS 178

Query: 188 --VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             +    + R  +     +     +GE  A   L +F    V  Y   RD      TS+L
Sbjct: 179 DRLADWGLARAMNRGAAVVARHVAVGEAAAAERLARFLDNPVDRYAAGRDRTDQAVTSRL 238

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L+ G +S R  W+           + ++GA  +L EL+WREF  HL+   P +   +
Sbjct: 239 SENLTYGEISARTIWHAGLR----ARAEGRAGAEKFLQELVWREFAWHLLYHTPEIA-SR 293

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +    +   W  D+   + W++G TG P +DAAMR+L   G MHNR R+I  S+L K L
Sbjct: 294 NWRGEWDAFPWRADNAEAERWRRGMTGEPFVDAAMRELFLTGTMHNRARLIAGSYLTKHL 353

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           L DWR+G+ +F   L+D D ASN  GWQW A +G D+ PYFR+FNP  Q ++FDP G + 
Sbjct: 354 LTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRVFNPATQAEKFDPDGAYR 413

Query: 426 RHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           R ++ EL+  P     +     P SW    D    YP P+V   +     L  Y
Sbjct: 414 RRFIAELSPDPGPEALSFFEAVPRSWGLAPDQC--YPRPVVGLAEGRARALAAY 465


>gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421]
 gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421]
          Length = 490

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 120/494 (24%), Positives = 208/494 (42%), Gaps = 27/494 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R  LR+ DN A         A++  +FI  P       +   +  F+  SL 
Sbjct: 1   MIRSLVWFRKGLRLHDNPA-LLDAARDAARLYPLFIVDPWFVNPERVGVNRMRFLLESLG 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  +L + G      Q        E L+    + ++ +L + R  E    RRD+ +   
Sbjct: 60  EIDGNLRRLGSRLIVLQG----RPQEVLERVLSRWQIGRLCFERDTEPYARRRDEAIRSM 115

Query: 127 LQH-RVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            +   V   S     L  P  ++     ++   Y  F +   +        + P      
Sbjct: 116 AERVGVRVISPTAHTLYDPDELIELGRGKVPTTYGAFGRLAAKLGEPDAPVASPSHLPPP 175

Query: 185 TGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKV--YYYVEQRDIP 237
                   IP   +  +   +      + P GE   L  L  +  ++     + +    P
Sbjct: 176 GELDADYGIPTLAELGYPDPECPSRGIIPPGGEGEGLRRLHVYLSDRQRSAGFAKPDTDP 235

Query: 238 ---AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                  T+ L  +L  G LS R  +  +++ + ++  +      S + +++WREF+  +
Sbjct: 236 TAFDPPSTTALGAHLKFGCLSARTFYAEVQKVYREVG-EHTEPPMSLIGQILWREFFYTV 294

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+    +   P   +I W+ +   L AW +  TGFP IDAAM QL T GW+H+  R
Sbjct: 295 GYATPNYDRIEG-NPVCRQIPWDDNPEYLAAWSEARTGFPWIDAAMTQLRTEGWLHHLSR 353

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL V W  G+  F   LLD D + N   W W +++   +  Y+R+++P  
Sbjct: 354 HAVACFLTRGDLWVSWEKGQAVFERLLLDQDWSLNASNWMWLSASAFFNA-YYRVYSPIS 412

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKAC 467
             K++DP+G ++R +LP+L  VP ++I+ P              +  +YP PIVDH++A 
Sbjct: 413 FAKKYDPEGRYVRRYLPKLARVPAEFIYEPWRAPLLVQKQAGCVVGRDYPDPIVDHEQAK 472

Query: 468 HHTLNQYYAAKKQS 481
              L +   A +Q+
Sbjct: 473 ACNLERMRLAYEQN 486


>gi|123967930|ref|YP_001008788.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. AS9601]
 gi|123198040|gb|ABM69681.1| putative deoxyribodipyrimidine photolyase [Prochlorococcus marinus
           str. AS9601]
          Length = 498

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 118/479 (24%), Positives = 215/479 (44%), Gaps = 35/479 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W + DLRI DN+AL  A  ++D  ++ ++I   + W Q+  S RQ  F   SL+ +
Sbjct: 4   INILWFKKDLRIFDNEALCEAIKDND--ILPIYIIELDIWSQNTHSDRQWQFCKESLIDL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKR- 126
           + +L++ G            + I   D+   + ++  ++ +++  +    +RD+ +++  
Sbjct: 62  RNALAEIGQPLIIRTG----NVINIFDAISSKFKIKGIYSHQETGDWLTYKRDQKVKEWA 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               +I K F         S+    L        ++K   +NL++A LR   + +I    
Sbjct: 118 FSKNIIWKEFLQ------FSVFRGNLDRNNWSKKWQKNSEKNLLKAPLR---INSINFNT 168

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
              PS+    F +  +        G +  L  ++ F   K+  Y +    P  +    ++
Sbjct: 169 GEIPSD--EIFSFKKETCPGRMQGGRKKGLERMQYFFSNKLDSYSKDISSPEKSFDSCTR 226

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY+  G +S       LKE F    I   + +    + L W   +   +   P +   
Sbjct: 227 LSPYICWGCIS-------LKEIFQKANISKNNNSRMLKSRLTWHCHFIQKLESEPELEF- 278

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + + P+ + I   K++ LL +W  G TGFP IDA MR LN  GW++ R+R +  SF   +
Sbjct: 279 REYHPFFKNIR-EKNNELLYSWSSGNTGFPFIDACMRSLNFHGWINFRMRAMLMSFASYN 337

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+       ++ +D +   +    Q    +G  S+   RI+NP  QGK  DPQG F
Sbjct: 338 LWLPWQDSGSELANKFVDYEPGIHWNQCQMQ--SGTTSINTNRIYNPIKQGKDHDPQGKF 395

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           I+ WLPEL ++   +IH P        +    +NY  PI+D   +  +   +     K+
Sbjct: 396 IKKWLPELKDLSLNFIHEPWLLSRFNKEEYEQINYIRPIIDIPNSTKNAKKKIQEITKK 454


>gi|163846298|ref|YP_001634342.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524057|ref|YP_002568527.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
 gi|163667587|gb|ABY33953.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447936|gb|ACM52202.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
          Length = 510

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 117/475 (24%), Positives = 183/475 (38%), Gaps = 36/475 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M + LVW + DLR+ D+ AL AA       V+ ++I  P        +AR   FI   L+
Sbjct: 1   MYIQLVWFKRDLRLHDHPALSAAAARG--PVLPLYIVEPSLIHAPDFAARHWTFIRGCLV 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE--INEVRRDKLLE 124
           +++ +L++ G            +++E LD       +  ++ + +    ++  R   +  
Sbjct: 59  ELRANLARLGQPLVVR----VGEAVEVLDHLVSTWPIEAIWAHEETGNLLSYARDRAVRR 114

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +          LP   ++       +    + + +     Q      P+     
Sbjct: 115 WARARGIPFHE------LPQNGVVRRLPSRDEWQARWEERMAAAQAQPPSALPPLAIDPG 168

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
           T P            P   +    P GE  AL  L  F   +   Y      P  A +G 
Sbjct: 169 TIPTADE-----LSLPPDTLSEHQPAGETAALQTLTDFIHRRSQQYHRALASPLTAWEGC 223

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-------NELIWREFYRHLM 295
           S+LS YL+ G LS R      +    +L   P      W+       + L W   +   +
Sbjct: 224 SRLSAYLAWGALSIRTVVQATRHRISELAFDPSPATRGWVRALNAFESRLHWHCHFIQKL 283

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P + +      +    E N    LL AW  G TG+P +DA MR L   GW++ R+R 
Sbjct: 284 EDEPEIEVRNLVRAYDGMREENHRPDLLVAWASGRTGYPFVDACMRALTATGWLNFRMRA 343

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +  SF+  DL   WR        + +D +   +    Q     G       RI+NP  QG
Sbjct: 344 MLVSFVAYDLWQHWREPALILARRWIDYEPGIHYS--QMQMQAGTSGNRTIRIYNPVKQG 401

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHK 464
              DP+G FIR W+PEL +VPT YIH P              +  +YP PIVDH+
Sbjct: 402 IDHDPEGIFIRRWVPELAHVPTPYIHTPWLLDRHGQERAGCRIGRDYPAPIVDHE 456


>gi|114768849|ref|ZP_01446475.1| deoxyribodipyrimidine photolyase [alpha proteobacterium HTCC2255]
 gi|114549766|gb|EAU52647.1| deoxyribodipyrimidine photolyase [alpha proteobacterium HTCC2255]
          Length = 519

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 103/489 (21%), Positives = 193/489 (39%), Gaps = 29/489 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++++VW + DLR  D+  L  A    +  ++ +++  P+ W+    S +  HFIY  L+ 
Sbjct: 7   AINIVWFKRDLRTNDHAPLLNASQQ-NTPILPIYVVEPDYWKTESSSRKHWHFIYDCLVD 65

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126
           +   L+  G           D  I+  + +     +  ++ + +   +    RDK ++  
Sbjct: 66  LNNELNDLGQPLIVQTGDVVDIFIQISEIF----DIKNIYSHEETGNMWTYERDKRVQVW 121

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +   I          P   ++              K + + +        P+   +   
Sbjct: 122 CKKNAI-----GQKEYPSNGVVRKLSSRDDWSKIRNKRMSEKIYPKPDYINPIK--KNVY 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQ 244
              P+     F  P   I  +   G   A+  L+ F  E+   Y+     P    +  S+
Sbjct: 175 STIPNKDDELFGTPI--IGRVQRGGRIKAICDLKSFLNERSSNYLYHISAPGKSEKYCSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMAFYPS 300
           LS +L+ G LS R+    +K+  +      K        ++ + L WR  +   +   P+
Sbjct: 233 LSAHLTWGSLSVREIVQSIKKRRLQFCDDDKKIYGRNLSAFNSRLAWRCHFIQKIESQPN 292

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +        +    + + D +   AW +G TG+P +DA MR L + GW+  R+R +  SF
Sbjct: 293 IETHCMHSAFESLRKIDPDDNKFLAWSKGNTGYPFVDACMRNLISEGWITFRMRAMLVSF 352

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
               L +DWR+   Y      D +   +    Q    +G   +   R++NP  Q    D 
Sbjct: 353 ASYQLWIDWRLSGNYLAKLFTDFEPGIHFSQLQMQ--SGVTGINAMRVYNPIKQSIEHDI 410

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQY 474
            G FI+ W+PEL ++P ++IH P  + +         +  +YP PIVDH+        + 
Sbjct: 411 NGHFIKKWVPELIDLPEKFIHEPWKYHNNLVDNCSVQIGRDYPFPIVDHEHEARIAKQKI 470

Query: 475 YAAKKQSLL 483
              +K  L 
Sbjct: 471 SNVRKNELF 479


>gi|302761504|ref|XP_002964174.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii]
 gi|300167903|gb|EFJ34507.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii]
          Length = 539

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 192/442 (43%), Gaps = 24/442 (5%)

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             ++  SL+Q+  SL + G      + +    +++ L         +++FYN  Y+   +
Sbjct: 3   RWWLKQSLIQLSSSLERLGAPLLVKRVA---GTLDALLQIAHDTGASQVFYNHLYDPVSL 59

Query: 118 RRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD  +++ L  H +   +F   +L  P  I +   Q +  +  F    +          
Sbjct: 60  IRDHRVKQGLADHGISVTTFRGDLLYEPWEIYDDQGQAFTTFQAFWSKSLSMRDPEAPLL 119

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVYY 229
            P   + L G +  S          +A       +   +  G          F    +  
Sbjct: 120 PPRQLLSLPGYLCQSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFLSGPILQ 179

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK-EEFVDLLIKPKSGAFSWLNELIWR 288
           Y  +R       TSQLSP+L  G +S R+ +  ++ ++F             +L  L  R
Sbjct: 180 YSIRRKQIDSVTTSQLSPHLHFGEISIRKIFYSIRMQQFRSKEAVDFESMNMFLRALGLR 239

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+ R+L   +P     +  +   +   W  D    ++W+QG TG+P++DA MRQL   GW
Sbjct: 240 EYSRYLSFNFP-FTHKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATGW 298

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           +H ++R++ +SFLVK L V W  G +YF   LLD D+ ++  GWQ+ +    D     R 
Sbjct: 299 LHCKIRVVVSSFLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRW 358

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVD 462
            NP  +G + DP+G ++R WLPEL+ VP  +IH P             +L  NYP PIV+
Sbjct: 359 ENPQEEGYKLDPKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVE 418

Query: 463 HKKA---CHHTLNQYYAAKKQS 481
              A       L++ +  KK +
Sbjct: 419 VAAAYYRQQQALDEMW--KKSA 438


>gi|260431373|ref|ZP_05785344.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415201|gb|EEX08460.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 541

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 108/486 (22%), Positives = 188/486 (38%), Gaps = 28/486 (5%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
            +   + +VW + DLR++D+ AL  A       V+ +++  PE W+Q   SARQ +F+  
Sbjct: 33  KSGGMMQVVWFKRDLRVSDHPALAQASE--VGPVLPLYVVEPELWQQPDASARQWNFVAE 90

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKL 122
           ++ +++  L + G            +    L     +  +  L+ + +   +   +RD+ 
Sbjct: 91  TIAELRSDLGELGQPLIVR----VGEIEAVLSELLNRGLIDVLWSHEETGNDWTYQRDRQ 146

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +    + H V  +   +  +       +   + +  +     +    L   D     +P 
Sbjct: 147 VAAWCRDHGVRWREVQNHGVFRGLKCRDGWAERWDRFMALPVSSPVALKHIDTEPGYIPT 206

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239
            R  G      + R               G    L  L  F   +   Y  +   P    
Sbjct: 207 GRDLGLRDDQCVGR------------QAGGRAAGLDRLNSFLTRRGERYQREMSSPLEGA 254

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMA 296
              S+LSPYL+ G LS R+ W   + +   L    K       S+   L W   +   + 
Sbjct: 255 VACSRLSPYLAWGALSMREVWQATENQRRRLPPHAKDWRKSLRSFSGRLHWHCHFIQKLE 314

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P +        +        D+ LL AW  G TG+P +DA MR L   GW++ R+R +
Sbjct: 315 DEPRIEFENLHRLYDGLRPRAPDAELLGAWSNGETGYPFLDACMRSLQATGWLNFRMRAM 374

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             +     L +DWR   E+      D +   +    Q    +G   +   RI+NP  QG 
Sbjct: 375 VMATASYHLWLDWRAPGEHLARMFTDYEPGIHWSQVQMQ--SGTTGINTVRIYNPVKQGY 432

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQYY 475
             DP+G FIR WLPEL  +  Q++H P    +  D+    YP  + DH  A      + +
Sbjct: 433 DQDPEGLFIRTWLPELAQIADQHVHEPWKAENAKDIVGTLYPERVFDHLAAAKAARERVW 492

Query: 476 AAKKQS 481
             ++ +
Sbjct: 493 GVRRSA 498


>gi|157412732|ref|YP_001483598.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9215]
 gi|157387307|gb|ABV50012.1| Deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9215]
          Length = 497

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 113/479 (23%), Positives = 205/479 (42%), Gaps = 35/479 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W + DLRI +N+ALY +  ++D  ++ ++I   E W Q   S RQ  F   S+L +
Sbjct: 4   INILWFKKDLRIDENEALYESLKDND--ILPIYIFEIEVWNQKTHSRRQWQFCKESVLDL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRL 127
           + SL + G            + I   +    +  V  ++ +++  +    +RDK ++   
Sbjct: 62  RNSLKEIGQPLIIRTG----NVINIFEEISSKFNVVGIYSHQETGDWVTYKRDKEVKLWA 117

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            ++ +I + F         S+    +        ++K   + L++  LR  P+       
Sbjct: 118 ANKKIIWREFLQ------FSVFRGNINRDDWSKKWKKNTERELIKRPLRISPI-----DF 166

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
            +      + F +           G +  +  ++ F  EK+  Y +    P  +    S+
Sbjct: 167 DIGEIPDEKIFSFKKDECKGSLKGGRKKGIERMQYFFNEKLNSYSKNISSPEKSFDSCSR 226

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY+S G +S ++ +           +   + +  + + L W   +   +   P +   
Sbjct: 227 LSPYISWGCISLKEIFY-------KANLNKNNNSIMFKSRLTWHCHFIQKLESEPELEF- 278

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F P+ +     K++ LL  W QG TG+P IDA MR LN  GW++ R+R +  SF   +
Sbjct: 279 CDFHPYFKNSR-TKNTELLLLWSQGNTGYPFIDACMRSLNFNGWINFRMRAMLMSFASYN 337

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+       ++ +D +   +    Q    +G  S+   RI+NP  QGK  DP+G F
Sbjct: 338 LWLPWQDSGSELANKFVDYEPGIHWNQCQMQ--SGTTSINTNRIYNPIKQGKDHDPEGEF 395

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IR W+PEL NV   +IH P             L Y  PIVD  K       +     ++
Sbjct: 396 IRKWVPELKNVAIDFIHEPWILSKFNCDEYAKLEYIKPIVDISKTSREARKKIQEITQK 454


>gi|47207105|emb|CAF92156.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 755

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 134/515 (26%), Positives = 209/515 (40%), Gaps = 58/515 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           L+W R DLR+ DN AL AA     A VI +FI +PE+                ++++ +L
Sbjct: 106 LLWFRRDLRLCDNPALTAALE-VGAPVIPIFIWSPEEEEGPAGVTVATGGACKYWLHQAL 164

Query: 66  LQVQKSLSQKGIVFQYHQ----CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +  SL + G    + +          S++ L     +     +  N  YE     RD 
Sbjct: 165 SCLCASLERNGSHLVFLRSAEAGGEGGSSLQTLKELVKETGARTVMANALYEPWLKDRDH 224

Query: 122 LLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYT--PFRKALIQNLVQ------A 172
                L +  V CK F    L  P S+    + +  + +   F     QN          
Sbjct: 225 AAAVALWKSGVECKMFHSYCLRDPYSVRTEGVGLRGIGSVSHFLSCCRQNPGPALGAPLE 284

Query: 173 DLRSLPVPAIRLTGPVTPS---------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
              +LPVPA    G    +               D+   +I   +   E+ A   L  F 
Sbjct: 285 PPTALPVPAHWPRGAPLEALGLARMPRRKDGTTVDW-AASIRKSWDFSEEGAHARLEAFL 343

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
            + VY Y ++        TS +SPYL  G LSPR      K                +  
Sbjct: 344 GDGVYRYDKESGRADAPNTSCVSPYLHFGQLSPRWVLWDAKAARCR--------PPKFQR 395

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +L WR+     ++ +P +   +   P  + + W+ D   L+AW++G TG+P++DAAMRQL
Sbjct: 396 KLAWRDLAYWQLSLFPELPW-ESLRPPYKALRWSSDRRHLKAWQRGGTGYPLVDAAMRQL 454

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF-----------MSQLLDGDLASNNGGW 392
              GWM+N +R + ASFL+  L + W+ G  +F              L+D D+A +   W
Sbjct: 455 WLTGWMNNYMRHVVASFLIAYLHLPWQEGYRWFQVRNGCRGDTGQDTLVDADVAIDAMMW 514

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH----SWLD 448
           Q     G D   +  + +P       DP G+++R W PEL+ +P + IH P     S L 
Sbjct: 515 QNGGMCGLDHWNF--VMHPVDAAMTCDPDGSYVRKWCPELSGLPDELIHKPWKCPASVLR 572

Query: 449 KND--LSLNYPLPIV-DHKKACHHTLNQYYAAKKQ 480
           +    L   YP  IV D ++    +L      +KQ
Sbjct: 573 RAGVVLGQTYPERIVTDLEERRSRSLRDVALVRKQ 607


>gi|293191025|ref|ZP_06609069.1| deoxyribodipyrimidine photolyase family protein [Actinomyces
           odontolyticus F0309]
 gi|292820712|gb|EFF79678.1| deoxyribodipyrimidine photolyase family protein [Actinomyces
           odontolyticus F0309]
          Length = 475

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 144/493 (29%), Positives = 216/493 (43%), Gaps = 54/493 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA----TPEQWRQHG---ISARQSHFI 61
             L+WLR+DLR+ D+ AL AAC  +D  V+A++I     T E   +HG   + A    + 
Sbjct: 2   TTLIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWY 61

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL Q+   L+  GI   + +    +     +D+       T + + R+Y     R D 
Sbjct: 62  HRSLQQLAPRLADLGIPLVFTRGDAANVMRRVVDALQP----TVVHWTRRYAPAACRLDA 117

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +++ L  R    S   S+L  P  +       Y+V+TPF  A+    + + L       
Sbjct: 118 AIKQELTSRTEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHAVADLPLTSLLPEPSPIG 177

Query: 182 IR------LTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEK 226
            R      L        +    D            + +   +  GE  A   L       
Sbjct: 178 ERGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDA-IDSW 236

Query: 227 VYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           +  Y  +RD+P  +  TS++SP L  G LSPRQ     +               +W  +L
Sbjct: 237 LPGYATRRDLPGEETSTSRISPRLRCGELSPRQAVAAAR-----TSTASGEDIVAWTRQL 291

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WREF  HL+     +    P  P   +  +  D HL +AW+QG TG  ++DA MRQL  
Sbjct: 292 YWREFSWHLLHHREHL-EDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQLWQ 350

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GWMHNR+RM+ AS L K++L  W+ GE++F   L+D D A+N   WQW A  G D+ PY
Sbjct: 351 TGWMHNRVRMVAASLLTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADAAPY 410

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           FRIFNP +Q  RFDP+  ++R W+PE    P   +                    VD  +
Sbjct: 411 FRIFNPDLQRTRFDPRSRYVRRWIPEGLARPVVSV--------------------VDLAE 450

Query: 466 ACHHTLNQYYAAK 478
           +    L  Y   +
Sbjct: 451 SRREALAAYEQVR 463


>gi|89069099|ref|ZP_01156472.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516]
 gi|89045272|gb|EAR51338.1| deoxyribodipyrimidine photolyase [Oceanicola granulosus HTCC2516]
          Length = 478

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 140/481 (29%), Positives = 214/481 (44%), Gaps = 35/481 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW+R +LR+ D+ AL  A       V+ VF+       +    A     +   +    +
Sbjct: 7   LVWVRRELRLGDHPALAEAAATG-RPVVPVFLCDETVEAR---GAAAQWRLGLGVAAFAE 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+  G      +            +   +    +++++R +E      ++ +   L   
Sbjct: 63  ALAGAGSRLVLRRGGAAAAL----VALAREAEAGEVWWSRAHEPVAAALERDVAGALAAE 118

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  ++F+  VL PP S+       YKVYTPF K++    V   L     P  RLT P  
Sbjct: 119 GIGTRAFEGHVLFPPESVATKTGGYYKVYTPFWKSVRDRDVGTPLP----PPKRLTAPGR 174

Query: 190 PSNIPRFFDYPFQA--------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                R   +   A        +     +GE  A   L +F +E++  Y + R+   ++G
Sbjct: 175 WPESERLEAWGLGAEMRRGADVVAEHVVVGEAAAARRLERFVEERLADYPQARNRFDVEG 234

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS LS  L++G +S R CW                GA ++L E+ WR+F  HL+   P +
Sbjct: 235 TSGLSENLAVGEISARSCWQAGLM----ARDAGNPGAETFLKEVAWRDFAYHLLHHTPRL 290

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQA--WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                + P      WN D    +   W++G TG  ++DAAMR++   G MHNR RMI  S
Sbjct: 291 ATDN-WRPEWAAFPWNTDEDAPEVVAWQRGRTGVALVDAAMREMYVTGRMHNRGRMIVGS 349

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           +L K LL  WRIG+ +F + L D D A+N  GWQW A +G D+ P+FR+FNP  Q ++FD
Sbjct: 350 YLTKHLLSHWRIGQRWFDAHLTDWDPANNALGWQWVAGSGPDASPFFRVFNPDGQAEKFD 409

Query: 420 PQGTFIRHWLPELNNVPTQYIHA-----PHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           P G + R W+ E  + P     A     P  W    D    YP P+V   +     L  Y
Sbjct: 410 PDGAYRRKWVAEGQDDPPATALAYFAAIPRKWSMSADDP--YPQPVVGLAEGRARALAAY 467

Query: 475 Y 475
            
Sbjct: 468 K 468


>gi|119503732|ref|ZP_01625814.1| deoxyribodipyrimidine photolyase, putative [marine gamma
           proteobacterium HTCC2080]
 gi|119460240|gb|EAW41333.1| deoxyribodipyrimidine photolyase, putative [marine gamma
           proteobacterium HTCC2080]
          Length = 490

 Score =  316 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 121/482 (25%), Positives = 189/482 (39%), Gaps = 21/482 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS+ +VW + DLR+ D+  L AA       ++ V+I  PE  +      R  HFI  SL 
Sbjct: 1   MSLSVVWFKRDLRLADHAPLSAAVALGQ-PMLLVYIVEPELLKNPHYRRRHWHFIAQSLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125
            +   L   G      +     D I    +    QR+  LF   +  +     RD+ +  
Sbjct: 60  DLNHQLQPHGTKVWVLEG----DPITLFTAINQSQRIHHLFSYEETGLEVTFARDREVIT 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             + + +C         P   +             + K +           L      L 
Sbjct: 116 WAKSQGVCWQE-----FPTNGVQRGRKHRKGWNHRWGKLMAAPAETIIPAQLNALRSDLP 170

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
             +  +   R   +  Q  +   P GEQ A   L  F   +   Y      P  + Q  S
Sbjct: 171 EDLKGALCQRLGGWLPQHPN-FQPGGEQQAHQTLEDFLTHRAGGYQRHISKPEGSRQHCS 229

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L+ G LS RQ    LKE            A  + + L W   +        ++  
Sbjct: 230 RLSPHLAWGNLSIRQVQQALKERQSKGGWARPLSA--FESRLHWHCHFIQKFESECTMEF 287

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +           +++SHL+ AW +G TGFP +DA MR L   G++H R R +  SFL  
Sbjct: 288 -ESINRGFLNYPRDQNSHLVAAWCEGQTGFPYVDACMRCLEATGYLHFRARAMLVSFLTH 346

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L  DWR+G  +  S  LD +   +    Q     G   +   RI+NP  Q    DP  +
Sbjct: 347 HLWQDWRLGVTWLGSLFLDFEPGIHYP--QMQMQAGVTGINTIRIYNPVKQSLEHDPTAS 404

Query: 424 FIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR W+PE+ ++PT  +H P   S L+     ++YP PIV+   +     +  +  K   
Sbjct: 405 FIRRWVPEIADLPTPLVHQPWLRSPLEHVLHPVDYPEPIVNLDVSHRRARDVLWELKSDP 464

Query: 482 LL 483
           ++
Sbjct: 465 MI 466


>gi|154508252|ref|ZP_02043894.1| hypothetical protein ACTODO_00748 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797886|gb|EDN80306.1| hypothetical protein ACTODO_00748 [Actinomyces odontolyticus ATCC
           17982]
          Length = 475

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 144/492 (29%), Positives = 217/492 (44%), Gaps = 54/492 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA----TPEQWRQHG---ISARQSHFI 61
             L+WLR+DLR+ D+ AL AAC  +D  V+A++I     T E   +HG   + A    + 
Sbjct: 2   TTLIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWY 61

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL Q+   L+  GI   + +    +   + +D+       T + + R+Y     R D 
Sbjct: 62  HRSLQQLAPRLADLGIPLVFARGDAANVMRQVVDALQP----TVVHWTRRYAPAACRLDA 117

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +++ L+ R    S   S+L  P  +       Y+V+TPF  A+    +   L       
Sbjct: 118 AIKQELKSRTEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHAVADLPLGPLLPEPSPIG 177

Query: 182 IR------LTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEK 226
            R      L        +    D            + +   +  GE  A   L       
Sbjct: 178 ERGGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDA-IDSW 236

Query: 227 VYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           +  Y  +RD+P  +  TS++SP L  G LSPRQ     +               +W  +L
Sbjct: 237 LPGYATRRDLPGEETSTSRISPRLRCGELSPRQAVAAAR-----TSTASGEDIVAWTRQL 291

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WREF  HL+     +    P  P   +  +  D HL +AW+QG TG  ++DA MRQL  
Sbjct: 292 YWREFSWHLLHHREHL-EDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQLWQ 350

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GWMHNR+RM+ AS   K++L  W+ GE++F   L+D D A+N   WQW A  G D+ PY
Sbjct: 351 TGWMHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADAAPY 410

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           FRIFNP +Q  RFDP+  ++R W+PE    P                     +P+VD  +
Sbjct: 411 FRIFNPDLQRTRFDPRSRYVRRWIPEGLARPV--------------------VPVVDLAE 450

Query: 466 ACHHTLNQYYAA 477
           +    L  Y   
Sbjct: 451 SRREALAAYEQV 462


>gi|210136298|gb|ACJ08741.1| cryptochrome [Sarcophaga bullata]
          Length = 542

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 127/515 (24%), Positives = 208/515 (40%), Gaps = 44/515 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MS++++W R+ LR+ DN AL  A  + D   +++ +FI   E      +   +  F+  S
Sbjct: 1   MSLNIIWFRHGLRLHDNPALLDAISDKDEGIELLPIFIFDGESAGTQSVGYNRLKFLLDS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +   L    +           + ++   S   Q+ + KL + +  E    RRD  ++
Sbjct: 61  LEDINNQLRSVSLSL-GRLYIMKGNPVQIFRSLHEQRGIKKLCFEQDCEPIWNRRDNAVK 119

Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
                  + C       L  P  ++N    +  +        +Q ++    R +P P   
Sbjct: 120 NLCHDLGITCIERISHTLWDPKKVINTNGGIPPLTYQMFLHTVQ-IIGLPPRPVPDPDWH 178

Query: 184 -----------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE- 225
                                 TP +   + D         +  GE  AL  L +  K  
Sbjct: 179 NVKFVKLSEKLIKDLGVFLESPTPEDFSVYPDSLSYLAKVKWIGGETQALLHLDQRLKVE 238

Query: 226 ----KVYYYVEQRDIPAI-QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275
               K  YY+  +  P I +    +S +L  G LS R+ +  + + F D+  + +     
Sbjct: 239 ESAFKCGYYLPNQAKPNILESPKSMSAHLRFGCLSVRKFYWDVHDLFKDVQQQAECLGML 298

Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGF 333
            SG      +LIWRE++  +    P+    +        I W   +   LQ W QG TGF
Sbjct: 299 MSGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NEICLNIPWAETNHIQLQRWTQGKTGF 357

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           P+IDAAMRQL   GW+H+ LR   A+FL +  L  +W  G  YF+  LLD D +   G W
Sbjct: 358 PLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEHGLRYFLKYLLDADWSVCAGNW 417

Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD--- 448
            W +S+  + +     +  P    KR DP G +I+ ++PEL NVP +YIH P        
Sbjct: 418 MWVSSSAFERLLDSSLVTCPIALAKRLDPMGQYIKQYVPELANVPKEYIHEPWRMPMNIQ 477

Query: 449 ---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                 + ++YP  ++D   AC          +  
Sbjct: 478 EDSDCVIGIHYPERLIDLNVACKRNTIAMRTLRNA 512


>gi|310831104|ref|YP_003969747.1| putative CPD class I photolyase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386288|gb|ADO67148.1| putative CPD class I photolyase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 474

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 143/481 (29%), Positives = 226/481 (46%), Gaps = 29/481 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQV 68
           +L   R DLRI DN  L+ A   ++   I +FI T +Q      +S     F+  SL  +
Sbjct: 3   NLFIFRRDLRIIDNLGLHQALKETNT--IPIFIFTHQQVINNPYLSDNSFGFLIESLEDL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRL 127
            K +S+      Y   +     I+ +        + K++ N+ +     +RD KLLE   
Sbjct: 61  SKQISKNKGKLYYFLTNKNTTEIDIISQIIQYNNILKIYTNKDWTPYAKKRDDKLLEFGK 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQNLVQADLRSLPVPAIR 183
           +  +I    +D  LLP GSI  +    YK++TPF                +       I+
Sbjct: 121 KENIIINLIEDYTLLPMGSICTNNNTAYKIFTPFYNKSKELWKNIPKPTKVNKYKFNKIK 180

Query: 184 LTGPVTPS-NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               +  + N+     Y       +   G +NAL  L+K   +K   Y  +R+    + T
Sbjct: 181 FINLIKSNINLSAMKQYYKSNSFRLVQGGRKNALLQLKKIKNQK--EYSIKRNNLMYE-T 237

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + LS Y+  G +S R+ + + K+   D          +  ++L WREFY ++  +Y  V 
Sbjct: 238 THLSAYIKFGCISIREVFYKFKKYLKDNN--------TLYSQLFWREFYTYITHYYQYVL 289

Query: 303 MGK-------PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            G+        F       +W+ +   L  WK+G TGFPI+DA +++L T G+MHNR R+
Sbjct: 290 QGQISNKVNLDFQEKYGNFKWSNNKTFLNKWKKGETGFPIVDAGIKELLTTGYMHNRSRL 349

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +T++FL+K  L+DWR GE+YF  +L D D A NNGGWQ+    G  +  YFRI +P  Q 
Sbjct: 350 LTSAFLIKLCLIDWREGEKYFAQKLTDYDPAQNNGGWQFHHG-GASNADYFRIISPISQA 408

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL-SLNYPLPIVDHKKACHHTLNQY 474
            RFD    +I+ WLP L ++  +++     +    DL  LNY  P+ D+KK    +L  Y
Sbjct: 409 NRFDKNAEYIKKWLPNLKDIKPKHLLDWEQYYSCYDLNKLNYFKPMFDYKKQRELSLKTY 468

Query: 475 Y 475
            
Sbjct: 469 K 469


>gi|311695859|gb|ADP98732.1| deoxyribodipyrimidine photo-lyase [marine bacterium HP15]
          Length = 538

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 102/482 (21%), Positives = 186/482 (38%), Gaps = 24/482 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW + DLR  D+  L AA    +  VI +++   + W+    S RQ  FI  SL  +
Sbjct: 29  TTVVWFKRDLRTRDHAPLVAAASLGE-PVIPLYVIEDDYWQLPDTSGRQWAFIRDSLDDL 87

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
            + L + G      + S  D     L     +Q + ++F +++   +    RD+ +    
Sbjct: 88  DRQLRKAGSQLLVIRGSVTD----ALKKLQARQGIDRIFCHQETGGHWTFERDRAVIGWC 143

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +     +        ++            + + + Q +++A         ++    
Sbjct: 144 SENQVEFREWNQF-----GVVRRLSDRDVWDRAWTELMRQPVLEAPTAIPTSDTLKTDWA 198

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
                     D    +       G      +L  F   +   Y      P  A++  S+L
Sbjct: 199 ADNGQGFEVPD----SCPDRQKGGSARGEKLLESFLDRRCVGYQYNISSPNTAVRACSRL 254

Query: 246 SPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           SP+++ G +S R+ +   K      + L + K    S+ + L W   +   +   P +  
Sbjct: 255 SPHIAYGTVSLREIYQEAKATGNHRNTLPRKKKSLTSFRSRLHWHCHFIQKLEDEPELEF 314

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                          DS  LQ W++G TG+P++DA+MR L   GW++ R+R +  +    
Sbjct: 315 RAMHREMEALKTGPNDSERLQRWQEGQTGWPLVDASMRALAHSGWINFRMRAMLMAIASY 374

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L + WR    +      D +   +    Q  +      +   RI+NP +Q ++ DP+G 
Sbjct: 375 QLWLHWRDPALHLARLFTDFEPGIHYSQTQMQSGLT--GINALRIYNPVLQSQKLDPEGE 432

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           FIR W+PEL  VP++ IH P               Y  P+ DH++A           +KQ
Sbjct: 433 FIRRWIPELAGVPSEMIHTPWLMTPAQKERYGGNTYIAPVCDHEQAARVARKAVGDFRKQ 492

Query: 481 SL 482
           S+
Sbjct: 493 SV 494


>gi|19772572|gb|AAL46564.1| cryptochrome 2 [Gallus gallus]
          Length = 531

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 109/451 (24%), Positives = 174/451 (38%), Gaps = 30/451 (6%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +   +  F+  SL  +  SL +        +    D           +  VT+L +    
Sbjct: 5   VGINRWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTD----VFPRLFKEWGVTRLAFEYDS 60

Query: 113 EINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLV 170
           E     RD  + K  +   V     +   L     I+     +    Y  F+  + +  +
Sbjct: 61  EPFGKERDAAIIKLAKEAGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMEL 120

Query: 171 QADLRSLPVPAIRLTGPVTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILR 220
                S  V     T  V                +  F        ++  GE  AL  L 
Sbjct: 121 PKKPVSSIVSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLD 180

Query: 221 KFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
           K  + K +    +R            + LSPYL  G LS R  + RL E +  +  +  +
Sbjct: 181 KHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNST 239

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
              S   +L+WREF+       P     +   P   +I W+K+   L  W +G TGFP I
Sbjct: 240 PPLSLYGQLLWREFFYTAATNNPKFDRMEG-NPICIQIPWDKNPEALAKWAEGKTGFPWI 298

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           DA M QL   GW+H+  R   A FL + DL + W  G   F   LLD D + N G W W 
Sbjct: 299 DAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMW- 357

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------K 449
            S       +F  + P   G+R DP G +++ +LP+L   P++YI+ P +  +      K
Sbjct: 358 LSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAK 417

Query: 450 NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             + ++YP P+V+H +     + +     +Q
Sbjct: 418 CIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 448


>gi|55377570|ref|YP_135420.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049]
 gi|55230295|gb|AAV45714.1| photolyase/cryptochrome [Haloarcula marismortui ATCC 43049]
          Length = 464

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 134/486 (27%), Positives = 222/486 (45%), Gaps = 35/486 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  +    +H+ W + DLRI DN+ L AA   +D +V+ V++   +      I  RQ  F
Sbjct: 1   MLVSLTKCMHVFWHQRDLRIPDNRGLTAAA--ADDEVLPVYVLDTDLLA--NIGKRQKAF 56

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           + A +  ++++    G      + +    +++ L +   +    +++YN  Y      R 
Sbjct: 57  LLAGVRALKQAYRDHGGELLVKKGT----AVDVLSNVVDEYDADRVYYNEHYRPARRNRQ 112

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           + +++ L      KS  D VL+ P  + +     Y+ ++ F      +     + S    
Sbjct: 113 RRVDEALP----TKSLTDLVLVDPAGLDSQ----YENHSRFYDDWQAHHKLPPVGSPDSG 164

Query: 181 A-IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-- 237
           + + ++ P T   I    D P          G + A      F    +  Y + RD    
Sbjct: 165 SLVDVSDPTTAPTIETEMDLPT--------PGYEGARQRYDDFLTGGIETYNDTRDDMQA 216

Query: 238 ----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    S++SPYL+ G++  R+ W    +   +     +     +  EL WRE   H
Sbjct: 217 AVERPTSAVSRMSPYLAAGMIGIREMWRDASDRHTEATGDAQRNIQKYRYELSWREQSYH 276

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           L+ + P++ + + +  +  +IEW  D    +AWK G TG+P IDA MRQL   G++HNR 
Sbjct: 277 LLYYNPTL-LSENYKTFPNRIEWENDEDNFEAWKHGETGYPFIDAGMRQLEQEGYIHNRP 335

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R   ASFL K LLVDWR G  +F  +L+D D A+N   WQW ASTG DSV   RIF+P  
Sbjct: 336 RQNVASFLTKHLLVDWREGARHFRKRLVDHDPANNAASWQWTASTGTDSV-DVRIFDPVA 394

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL--DKNDLSLNYPLPIVDHKKACHHTL 471
           Q  ++D    ++  ++PEL  VP+  I    +    ++ +L+ +Y  PIVD   A     
Sbjct: 395 QMSKYDSGADYVTEYVPELRGVPSTKIVDWPTLSDGEREELAPDYYHPIVDRNAAYERAQ 454

Query: 472 NQYYAA 477
             +  A
Sbjct: 455 RVFETA 460


>gi|284173137|ref|ZP_06387106.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
 gi|261600969|gb|ACX90572.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
          Length = 431

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 151/473 (31%), Positives = 215/473 (45%), Gaps = 49/473 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  N + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALGNCE-KVIPTFILDPRQVGDENQYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + S      V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELGKRGSRLYVY----FGLAEEVIKSLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R    KSF+D +L       N     YK +T F  A+    V+  +++      +    
Sbjct: 117 ERGKVMKSFEDYLLTSKNDFKN-----YKNFTTFYNAVKNKQVRKPIQNNYTNYYK---- 167

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     D            G +  L ++ +    K   Y  +RD  A    + LSP
Sbjct: 168 ------NSLGDEYELPPSQGERGGRKEGLKLIDR---AKQIDYS-RRDFVAEDNRTFLSP 217

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P 
Sbjct: 218 HLKFGTLSVREVYYSLVDNQA------------IIRQLYWRDFYT-LLAYYNERVFYEPL 264

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 IEW  +  LLQAW  G TG+PIIDA MRQLN  G M NR+RM+TA FLVK LL+
Sbjct: 265 RREYSCIEWGNNEKLLQAWVHGKTGYPIIDAGMRQLNQTGDMPNRVRMLTAFFLVKVLLI 324

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DW+IGE YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I+ 
Sbjct: 325 DWKIGERYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYIKR 382

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           W+ EL +   + IH  + +  K     NYP PIVD +   +     Y   K Q
Sbjct: 383 WVKELEDYDAKIIHNAYKYTLK-----NYPNPIVDWRIRINLAKRLYERCKDQ 430


>gi|268679778|ref|YP_003304209.1| deoxyribodipyrimidine photo-lyase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617809|gb|ACZ12174.1| Deoxyribodipyrimidine photo-lyase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 452

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 210/472 (44%), Gaps = 33/472 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLR+ D+  L     + + +V+ +FI           + R+  FI+  +L ++ 
Sbjct: 4   VLWFRRDLRVDDSMLL-----SVEGEVLPIFIFDTHILNSLPKTDRRVAFIFEQVLSLKA 58

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L   G+       +  +       SY      + ++ +  Y+     RD+ +   L+  
Sbjct: 59  KLKALGLDLALFYGTPLEVF-----SYLKTLGFSDVYASVDYDAYAKERDEKVGAILR-- 111

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
               + +DS L  P  +L      Y V+TPF KA  Q   Q  +        RL      
Sbjct: 112 --FHALNDSYLFEPTEVLKKDGTPYLVFTPFYKACQQLYTQFHVLKYTKATQRLCEFDCS 169

Query: 191 SNIPRFFDYPFQAIDPMFPIGE-------QNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +      +        M  IG              L  F   K+  Y   RD  A   TS
Sbjct: 170 ALWHIEKESKTALHVKMENIGFIPLHVKLLEPHKALEAF-TCKLDAYAHDRDFLACDATS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LS +L  G +  R+        ++  L K       +  +LI+REFY +L+  +P +  
Sbjct: 229 HLSVHLRFGTIGIREVV-----RYLVALKKQGHTTEPFFRQLIFREFYAYLLYHFPHLAW 283

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                 +     + ++    + +    TG+P++DAA+R+L   G MHNR RM+  SF  K
Sbjct: 284 KN----YKYTPPYEENQESYERFITAQTGYPLVDAAVRELLETGLMHNRARMVVGSFFTK 339

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            LL+ W+ GE +F   LLD D ++N   WQW A TG D  PYFRIFNP  Q  +FD +  
Sbjct: 340 HLLLPWQRGEAFFAEHLLDYDASANILSWQWCAGTGIDPQPYFRIFNPYAQSLKFDKEAL 399

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +I+ +LP+L ++P+  +H   S+L  +++  +YP PI+ H+KA    LN + 
Sbjct: 400 YIKRFLPQLRDIPSSLLHK-ESYLLSHNIP-HYPKPIIQHEKARKRFLNAFA 449


>gi|254445301|ref|ZP_05058777.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
           DG1235]
 gi|198259609|gb|EDY83917.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
           DG1235]
          Length = 522

 Score =  316 bits (809), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 118/495 (23%), Positives = 207/495 (41%), Gaps = 47/495 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW + DLR+ D++ L+ A       V+ ++I  P     + I+     FI  SL  + 
Sbjct: 7   SIVWFKRDLRVHDHRPLFEASRLG--PVLPLYIVEPILLDSNDIAPCHGSFINDSLRDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQ 128
            SL + G     H+ +    + E   S        +LF + +       RRD+ +    +
Sbjct: 65  TSLRKLGTALVVHEGT----ATEVFQSLLKSIGPFRLFSHEETGNALTFRRDRDVAAWTK 120

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             R+    +      P   ++            + + +    + A     P+   +    
Sbjct: 121 TQRIQWIEY------PQNGVIRRLTTRDGWADRWHERMKVEQISAPKHIAPILKSQ---- 170

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
            +P++ P+    P  A   +   GE  A   L  F +E+   Y ++   P  A    S+L
Sbjct: 171 -SPTDFPKVLRTP-PANPSLQAGGETPANKCLASFLQERGRAYHKEMSSPLTADTSCSRL 228

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---------------FSWLNELIWREF 290
           SPYL+ G +S +        +   L  +  +                  S+L+   W   
Sbjct: 229 SPYLAYGCISMKTVVQSTWTKAAHLREQKAAAKAEKTPYHERYSLMALRSFLSRCHWHCH 288

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +   +   PS+   KPF P  E +     +   L+AW+ G+TG+P +DA +R LNT  W+
Sbjct: 289 FIQKLEDQPSIEF-KPFNPALEGLRRLEPNHAFLEAWQTGHTGYPFVDACIRYLNTHKWI 347

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           + R+R +  SF   DL +DWR  +++     LD +   +    Q    +G   +   RI+
Sbjct: 348 NFRMRAMLVSFAAYDLWIDWRHFKDHLARAFLDYEPGIHYSQIQMQ--SGTTGINTLRIY 405

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463
           NP  QG+  DP+G FI+ W+PEL  +P +++H P +            L  +YPLPI+DH
Sbjct: 406 NPIKQGRDQDPRGIFIKRWVPELAAIPAEHVHEPWTLSQTQQKKLSCLLGKHYPLPIIDH 465

Query: 464 KKACHHTLNQYYAAK 478
            +A      ++ A +
Sbjct: 466 AEAIRKARVKFKALR 480


>gi|256393411|ref|YP_003114975.1| deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM
           44928]
 gi|256359637|gb|ACU73134.1| Deoxyribodipyrimidine photo-lyase [Catenulispora acidiphila DSM
           44928]
          Length = 473

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 194/452 (42%), Gaps = 27/452 (5%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
              DLR+ DN  L AA  ++D +V+ +F+          IS  +  F+  SL  +  +L 
Sbjct: 28  FTRDLRVHDNPVLAAAAASADGRVVPLFVLDGGIL--PRISETRRRFLEESLADLDAALR 85

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133
             G            D +  +     +    ++            R   L   L+     
Sbjct: 86  ALGGRLVLRSG----DVVAEVCRVVAEVDAVEVHLASDVTAYAHERQDALAAALRANGAE 141

Query: 134 KSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
               D    + PPG +  +    + V+TP+ +   +  ++A   +  +    + G   P+
Sbjct: 142 LHLHDQVHTIQPPGELRPNDRDHFSVFTPYWRRWAEMPLRAPASAPRLTVPDIAGLELPT 201

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
           +         +        GE       +++  + V  Y +  D  A   TS+LSPYL  
Sbjct: 202 SADSTLSGGLR-------GGETQGRKRAKQWLGKAVEDYEDIHDDLAANATSKLSPYLHF 254

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G +S  +   R           P SG  ++L +L WR+F+  +MA  P         P  
Sbjct: 255 GCVSATELAARA------SRDHPGSGTEAFLRQLCWRDFHHQVMAARPDAA-HTDLRPRG 307

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
               W  D   L AW  G TG PI+DA MRQL   GWMHNR R+ITA FL K L +DWR 
Sbjct: 308 A---WVDDPEALDAWTAGRTGIPIVDAGMRQLAAEGWMHNRARLITAGFLTKTLGIDWRS 364

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G  +F   LLD D+A+N   WQW A TG D+ P  R+ NP  Q  R+DP G ++R ++PE
Sbjct: 365 GAAHFAHHLLDADVANNILNWQWVAGTGMDTRP-NRVMNPLRQATRYDPSGEYVRRYVPE 423

Query: 432 LNNV-PTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           L ++     +H P          L+YP PIV+
Sbjct: 424 LADLSDAADVHQPWRLGPVALKELDYPAPIVE 455


>gi|50306241|ref|XP_453092.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642226|emb|CAH00188.1| KLLA0D00462p [Kluyveromyces lactis]
          Length = 595

 Score =  315 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 145/535 (27%), Positives = 230/535 (42%), Gaps = 81/535 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD-AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           + W R DLR+ DN  L  A + S    V A+++     W  H  S  +  F   +L  + 
Sbjct: 73  IHWFRGDLRVRDNTGLAYALNQSKSGSVEALYVINEHDWIAHMESGWKLKFQLDALRSLS 132

Query: 70  KSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQRVTK----------------- 105
           + L++ G+              SN  +  +W      +   +K                 
Sbjct: 133 RELAKLGVRLHVKYFIPESPCLSNSREYAQWFSHIIEEIAASKNYDGNSKDDTKDDTDAD 192

Query: 106 -----------------------LFYNRQYEINEVRRDKLLEKR-----LQHRVICKSFD 137
                                  +  N QYE++E+ RD  + +             K F 
Sbjct: 193 EPALKKRKKDNDENQKGGSPNILVTANLQYEVDELYRDLKICRLQTQSSNSANFTLKLFH 252

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197
           D  ++ PG +       Y ++TP+ K  +  L         +         +        
Sbjct: 253 DMCIIEPGILKTGKGSQYTIFTPWYKKWVSFLEANQKDKHTICIEASIPQSSNREKVNPE 312

Query: 198 DYPFQAIDP-----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           +  +Q  D            +    E+ AL  L +F  ++   Y   +D+  + GTS LS
Sbjct: 313 EIKYQLPDKFMSEMPEQTLNIPKADEETALKKLTEFISKRASKYNNDKDLLDLTGTSLLS 372

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLL----IKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
            Y++ GV+S R   N+  +     L    IK  +   +++ E+ WR+FY+H ++++P + 
Sbjct: 373 CYVTSGVISARTILNQSYQANNSRLMNKDIKKNNSLETFIKEVAWRDFYKHAISYWPFLS 432

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           M  PF   T  I+W  D  L + W  G TG PI+DA M ++   G+++NR RMITASFL 
Sbjct: 433 MDLPFKFETLNIKWENDVFLFEKWCYGETGIPIVDAIMLKMLKTGYINNRSRMITASFLA 492

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+LL+DWR GE +F   L+D D ASN GGW + ASTG D  PYFR+FN  +Q +++DP+G
Sbjct: 493 KNLLIDWRWGERWFRKHLIDYDTASNVGGWGFCASTGIDCQPYFRVFNMKLQSEKYDPEG 552

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            FIRHWL E +   +  +H P             P  IVD + +    L ++   
Sbjct: 553 KFIRHWL-ENDENDSDNVHEPK------------PNAIVDLRDSRERVLERFREV 594


>gi|256372081|ref|YP_003109905.1| Deoxyribodipyrimidine photo-lyase [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008665|gb|ACU54232.1| Deoxyribodipyrimidine photo-lyase [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 456

 Score =  315 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 152/477 (31%), Positives = 222/477 (46%), Gaps = 35/477 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + ++WLR DLR  D+          DA   AVF+  P   R    S  +  ++  +L ++
Sbjct: 1   MRVLWLRGDLRSYDHAGWSE-LGIGDA---AVFVLDPGLAR--HASPIRRAWLAGALGEI 54

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
                 +  +               L +       T++  ++       RR     + L+
Sbjct: 55  DDWTDHRLSLLHARHGD-------ELAAIFAAWGATEVLTHQGVAPGIRRRIDATRRSLE 107

Query: 129 HRVICKSFDDS-VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R I     DS   + PGS+       ++V+  F +     +          P      P
Sbjct: 108 ARGIALRVVDSAYAVAPGSLTRPEGGAWRVFGAFWRQWRPAVHGLGPFEATAP------P 161

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                   F     +  D      ++ AL  L +F   ++ +Y   RD PA+  TS+LSP
Sbjct: 162 SLAVTERHFEPADLRPPDQPLLTPQRTALERLERFVDSRLAHYAADRDRPAVAATSELSP 221

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
            L IG + PR     L +            A  ++ EL WREFY H +  +P + +    
Sbjct: 222 ALHIGAIHPRTILAALGDLDR---------ADRFVRELAWREFYAHALWHHPDL-VDLEL 271

Query: 308 IPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            P   +I W++        +AW  G TGFPI+DA MR+L   GW+HNR+RMI AS LVKD
Sbjct: 272 DPTLRQIAWDEGDEADARFRAWCDGRTGFPIVDAGMRELAATGWLHNRVRMIVASLLVKD 331

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR G  +F + L D D+ASN G WQW A TG D+ PYFR+FNPT+QGK+FDP G +
Sbjct: 332 LHLDWRRGAAWFEATLADADIASNRGNWQWVAGTGLDAAPYFRVFNPTLQGKKFDPDGHY 391

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +R W+PEL   PT  IH P  W+ + +    YPLPIVDH +     L +Y AA+  +
Sbjct: 392 VRRWVPELRACPTSLIHEPWRWVGRENAG--YPLPIVDHDRERREALARYDAARASA 446


>gi|254525619|ref|ZP_05137671.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9202]
 gi|221537043|gb|EEE39496.1| deoxyribodipyrimidine photolyase [Prochlorococcus marinus str. MIT
           9202]
          Length = 497

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 108/479 (22%), Positives = 204/479 (42%), Gaps = 35/479 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W + DLRI +N+AL  +  ++D  ++ +FI   E W Q   S RQ  F   S++ +
Sbjct: 4   INILWFKKDLRIDENEALNESLKDND--ILPIFIFEIEVWNQKTHSRRQWQFCKESIIDL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRL 127
           + SL + G            + I+  +    +  +  ++ +++  +    +RD+ ++   
Sbjct: 62  RNSLKEIGQPLIIRTG----NVIKIFEEISSKFNIVGIYSHQETGDWVTYKRDQEVKLWA 117

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            ++ +I + F         S+    +        ++K   + L++  LR  P+       
Sbjct: 118 ANKKIIWREFLQ------FSVFRGNINRDDWSKNWKKNTERELIKRPLRINPI-----DF 166

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
            +      + F +           G +  +  ++ F  EK+  Y +    P  +    S+
Sbjct: 167 DIGKIPDEKIFSFKKDECKGSLKGGRKKGIERMQYFFNEKLNSYSKNISSPEKSFDSCSR 226

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY+S G +S ++ +           +   + +  + + L W   +   +   P +   
Sbjct: 227 LSPYISWGCISLKEIFY-------KANLHKNNNSIMFKSRLTWHCHFIQKLESEPELEFH 279

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F P+ +     K++ LL  W QG TG+P IDA MR LN  GW++ R+R +  SF   +
Sbjct: 280 -DFHPYFKNSR-TKNTELLLLWSQGNTGYPFIDACMRSLNFNGWINFRMRAMLMSFASYN 337

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+       ++ +D +   +    Q    +G  S+   RI+NP  QGK  DP G F
Sbjct: 338 LWLPWQDSGSELANKFVDYEPGIHWNQCQMQ--SGTTSINTNRIYNPIKQGKDHDPDGEF 395

Query: 425 IRHWLPELNNVPTQYIHAPHSWLD---KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           I+ W+PEL N+   +IH P             L Y  PIVD  K       +     ++
Sbjct: 396 IKKWVPELKNIAIDFIHEPWLLGKFNCDEYAKLQYNKPIVDISKTSREARKKIQEITQK 454


>gi|297565815|ref|YP_003684787.1| Deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946]
 gi|296850264|gb|ADH63279.1| Deoxyribodipyrimidine photo-lyase [Meiothermus silvanus DSM 9946]
          Length = 435

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 145/472 (30%), Positives = 217/472 (45%), Gaps = 43/472 (9%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVW R DLR  D+ ALY A  +    ++ +    P        S R+  + YA+   +
Sbjct: 1   MNLVWHRADLRTHDHPALYQAAQSG--PLVGLVNLDPHILE--PTSPRRRAWFYANTQAL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++ +++G        + +    E L     +  V ++F    Y    + RD   E+ + 
Sbjct: 57  REAYARRGGTLLVRYGTPW----EVLPQVVAELGVQRVFAIASYTPYGLHRDHKTEQAIP 112

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            R+     + + + PPG +L      Y VYTP+ K       +     LP        P 
Sbjct: 113 GRI--HWCEGNHVQPPGRLLKPDGTPYTVYTPYAKRWWGEAERLGEGLLPPGR----FPA 166

Query: 189 TPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                      P +  D P+ P GE+ AL  L  F ++++  Y + RD    QG S+LSP
Sbjct: 167 LERPDLELGQVPQEPSDVPLPPPGEEAALQALEAFLRDRLPTYHQTRDRLDGQGGSRLSP 226

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           Y ++GVLSPR   +R              GA  W+ EL WR+F   L+   P   + + F
Sbjct: 227 YFTLGVLSPRLAVHRALHI-------GGEGARKWVAELAWRDFSADLLYHRPQ-MLHQSF 278

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P  + + W  D  L +AWK G TG  ++DAAMR+LN  G+M NR RM  A F VK  L+
Sbjct: 279 DPRWDGLPWVDDPELFEAWKAGETGIALVDAAMRELNATGFMSNRARMAVAQFAVKLALL 338

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W+  E++F ++LLDGD ASN  GWQWA   G D+ PYFR+FN   Q  + DP+G +++ 
Sbjct: 339 PWQKAEQHFKNRLLDGDTASNLQGWQWAGGLGVDAAPYFRVFNLERQVAQHDPEGVWLKR 398

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           WLPE    P Q                    P++D + A    L       K
Sbjct: 399 WLPEWGGPPVQ--------------------PVIDLEAARQRYLAAAARIAK 430


>gi|78212258|ref|YP_381037.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9605]
 gi|78196717|gb|ABB34482.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. CC9605]
          Length = 493

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 119/478 (24%), Positives = 192/478 (40%), Gaps = 35/478 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            ++ +VW + DLRI D++ L AA       V+ +++  PE WRQ   S RQ  F   SLL
Sbjct: 2   AALQIVWFKRDLRIVDHQPLAAAVERG--LVLPLYVVEPELWRQPDASERQWMFCRESLL 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125
           +++++L+ +G            D ++ L+    Q  +  L+ + +       +RDK +  
Sbjct: 60  ELRQALADRGQPLVVR----AGDVVQVLERARRQFGIDGLWSHEETGNGWTYQRDKRVGA 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +   I       + LP   +             +   + + +         +  I   
Sbjct: 116 WARRHGIAW-----MELPQFGVTRRMHSRNGWAKRWEVQMTEPITPVPAALQALDGIDHG 170

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                       D    A       G    L  L  F + +   Y      P  A  G S
Sbjct: 171 VIPERPCSELLLD----ACPQRQIGGRSTGLEELNDFLQHRAQRYQRSMSSPNTAFTGCS 226

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ G LS R+     +            G  S+ + L W   +   +   P++  
Sbjct: 227 RLSTYLTWGCLSMREVLQTSR-------THSGRGVSSFESRLHWHCHFIQKLEDQPAIEF 279

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F P+   I    D+  L AW +G TG P +DA MR L   GW++ R+R +  SF   
Sbjct: 280 S-DFHPFMRGIR-AADAERLTAWSEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASY 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L + WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG   DPQG 
Sbjct: 338 NLWLPWRDSGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGMDHDPQGL 395

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR W PEL +VPT +IH P        L    P PIVD   +     ++ +  ++ +
Sbjct: 396 FIRQWCPELKDVPTIHIHEPWM------LGGGMPAPIVDVTASMQDAKDRIWDIRRSA 447


>gi|260436401|ref|ZP_05790371.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH
           8109]
 gi|260414275|gb|EEX07571.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. WH
           8109]
          Length = 493

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 119/477 (24%), Positives = 195/477 (40%), Gaps = 37/477 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            ++ +VW + DLRI D++ L AA       V+ +++  PE W+Q   S RQ  F   SLL
Sbjct: 2   AALQIVWFKRDLRIVDHQPLAAAAERG--LVLPLYVVEPELWQQPDASERQWMFCRESLL 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125
           +++++L+ +G            D ++ L+    Q  +  L+ + +       +RDK +  
Sbjct: 60  ELRQALADRGQPLVVR----AGDVVQVLERARRQFGIDGLWSHEETGNGWTYQRDKRVGA 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +   I  +      +P   +             +    +Q +         + ++   
Sbjct: 116 WARRHGIAWTE-----IPQFGVTRQMRSRNGWAKRWE---VQMMEPITPVPAALQSLEGI 167

Query: 186 GP-VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
            P V P    R  + P          G    L  L  F + +   Y      P  A  G 
Sbjct: 168 DPGVIPERPCR--ELPVDGCPQRQTGGRSIGLGELSDFLQHRASRYQRAMSSPNTAFTGC 225

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS YL+ G LS R+     +            G  S+ + L W   +   +   P++ 
Sbjct: 226 SRLSAYLTWGCLSMREVLQTSR-------TNSGRGVSSFESRLHWHCHFIQKLEDQPAIE 278

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               F P+   I    D+  L AW +G TG P +DA MR L   GW++ R+R +  SF  
Sbjct: 279 YS-DFHPFMRGIR-ADDAERLTAWSEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFAS 336

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L + WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG   DPQG
Sbjct: 337 YNLWLPWRDSGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGMDHDPQG 394

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            FIR W PEL +VP  +IH P        L    P PIVD   +     ++ +  ++
Sbjct: 395 LFIRQWCPELKDVPKIHIHEPWM------LGGGMPPPIVDVTTSMQDAKDRIWEVRR 445


>gi|321475718|gb|EFX86680.1| hypothetical protein DAPPUDRAFT_307800 [Daphnia pulex]
          Length = 520

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 142/488 (29%), Positives = 212/488 (43%), Gaps = 34/488 (6%)

Query: 1   MKATTAMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ 52
           M     MS  V +   RNDLR  DN+ +  A  ++D  V+ ++   P  +          
Sbjct: 1   MIRILKMSNRVAICLFRNDLRYHDNEVIALAHKSAD-FVLPLYCFDPRHFEGTHHYKFPK 59

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
               ++ F+  S+   +++L ++G           +  ++   S     +VT L    + 
Sbjct: 60  TGIFRTQFLLESVEDFRQTLVKRGSNLMIVHSKPEEALLKIFKSLTG-LKVT-LILQTEV 117

Query: 113 EINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
              E   +K L+K  Q  +    +   S L   G +      +   YT FRK + + L  
Sbjct: 118 TKEETDVEKRLQKICQEIKASYINCWGSTLYHKGDLPFQINHVPDSYTGFRKDVEEKLRI 177

Query: 172 ADLRSLP---VPAIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKF 222
               S+P    P       +   N+P         P       FP   GE  AL  L+ +
Sbjct: 178 RPEISMPDKMKPVPTFAHEIPWGNLPTIEALNSTKPIPNSSSAFPFNGGETAALLRLKSY 237

Query: 223 CKEKVY--YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
             +      Y E R+ +     +++ S +LS G LSPR+    L  E  +L        +
Sbjct: 238 LWDTNAVAQYKETRNGLIGSDYSTKFSSWLSHGCLSPRRIHWEL--EKYELQRTKNQSTY 295

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
               EL+WR++++ +   Y       P      + +W KD  L +AW+ G TG P +DA 
Sbjct: 296 WVRFELLWRDYFKFVSMKYGDRIF-YPNGMKGRRQQWKKDMELFKAWQMGKTGVPFVDAN 354

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR+L   GWM NR R   ASFLVKDLL+DWR+G E+F S LLD D+ SN G W + A  G
Sbjct: 355 MRELLATGWMSNRGRQNVASFLVKDLLLDWRLGAEWFESLLLDHDVCSNYGNWNYVAGIG 414

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLS 453
           ND     R FN   Q   +D +G +IR W+PEL  +P   IH+P           K  L 
Sbjct: 415 NDPREN-RKFNMIKQSMDYDLEGNYIRMWVPELREIPGSKIHSPWMLSSGALSAAKIRLG 473

Query: 454 LNYPLPIV 461
            NYP P+V
Sbjct: 474 DNYPNPVV 481


>gi|326920457|ref|XP_003206489.1| PREDICTED: cryptochrome-2 [Meleagris gallopavo]
          Length = 540

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 109/444 (24%), Positives = 172/444 (38%), Gaps = 30/444 (6%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  SL  +  SL +        +    D           +  VT+L +    E     R
Sbjct: 21  FLLQSLEDLDNSLRKLNSRLFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKER 76

Query: 120 DKLLEKRLQH-RVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSL 177
           D  + K  +   V     +   L     I+     +    Y  F+  + +  +     S 
Sbjct: 77  DAAIIKLAKEAGVEVVVENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSS 136

Query: 178 PVPAIRLTGPVTPSNIP-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKV 227
            V     T  V                +  F        ++  GE  AL  L K  + K 
Sbjct: 137 IVSQQMETCKVDIQENHDDMYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKA 196

Query: 228 YYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           +    +R            + LSPYL  G LS R  + RL E +  +  +  +   S   
Sbjct: 197 WVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYG 255

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           +L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M QL
Sbjct: 256 QLLWREFFYTAATNNPKFDRMEG-NPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQL 314

Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
              GW+H+  R   A FL + DL + W  G   F   LLD D + N G W W  S     
Sbjct: 315 RQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFF 373

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNY 456
             +F  + P   G+R DP G +++ +LP+L   P++YI+ P +  +      K  + ++Y
Sbjct: 374 QQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDY 433

Query: 457 PLPIVDHKKACHHTLNQYYAAKKQ 480
           P P+V+H +     + +     +Q
Sbjct: 434 PKPMVNHAETSRLNIERMKQIYQQ 457


>gi|170059953|ref|XP_001865587.1| cryptochrome-1 [Culex quinquefasciatus]
 gi|167878532|gb|EDS41915.1| cryptochrome-1 [Culex quinquefasciatus]
          Length = 789

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 116/493 (23%), Positives = 178/493 (36%), Gaps = 74/493 (15%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL     ++ A +  VF+  P       +   +  F+   L  + 
Sbjct: 52  TVHWFRKGLRLHDNPALREGLKDA-ASLRCVFVIDPWFAGSSNVGINKWRFLLQCLEDLD 110

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++L Q        +        + L     +   T L +    E     RD  + +  + 
Sbjct: 111 RNLRQLNSRLFVIRG----QPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKE 166

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-- 186
             +   S     L     I+        +           +   D    P PAI L    
Sbjct: 167 LNIDVISAVSHTLYKLERIIEKNNGRAPLTY---NQFQAIIASMDAPPQPEPAITLAAIG 223

Query: 187 -PVTPSN--------IPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQR 234
             VTP          +P   +  F+      P++  GE  AL  L +  + K +      
Sbjct: 224 RAVTPQCDDHDDKYGVPTLEELGFETEGLKPPIWVGGETEALARLERHLERKAW------ 277

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
                                                IK      S   +L WREF+   
Sbjct: 278 ------------------------------------KIKKAYPPLSLHGQLFWREFFYCA 301

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P+        P   +I W++++  L  W  G TGFP IDA M QL   GW+H+  R
Sbjct: 302 ATKNPNFDKM-AGNPICVQIPWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLAR 360

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P  
Sbjct: 361 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGMWMW-LSCSSFFQQFFHCYCPVK 419

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKAC 467
            G++ DP G +IR +LP L N PT+YIH P +  +      +  +  NYPLP+V+H  A 
Sbjct: 420 FGRKADPNGDYIRRYLPVLKNFPTRYIHEPWNAPESVQRAARCIIGKNYPLPMVNHAIAS 479

Query: 468 HHTLNQYYAAKKQ 480
              + +     +Q
Sbjct: 480 RANMERIKQVYQQ 492


>gi|78185218|ref|YP_377653.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
 gi|78169512|gb|ABB26609.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
          Length = 496

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 127/482 (26%), Positives = 202/482 (41%), Gaps = 45/482 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ +VW + DLRI D++ L  A       V+ +++     W+Q   S RQ  F   SLL 
Sbjct: 3   ALQIVWFKRDLRIVDHRPLIEASKRG--PVLPLYVVETRLWQQPDSSKRQWLFCRESLLD 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126
           +Q++L+  G            D +E L+   LQ  +  L+ + +       +RDK +   
Sbjct: 61  LQRALATLGQPLVLRSG----DVVEVLERARLQFGIDALWSHEETGNGWTYQRDKRVGAW 116

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +   IC      V +P   +             +     +  +   +   P    RL G
Sbjct: 117 AKQHGICW-----VEIPQFGVTRRLTSRNGWAKRW-----EEQMAEPITQPPTSLPRLDG 166

Query: 187 PVTPSNIPRFFDYPFQAIDPMFP-----IGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239
                +  +  D P  AI P         G +      R F  ++V  Y      P  A 
Sbjct: 167 L----DPGKIPDLPPGAIAPDPCPHRQLGGRRQGELEFRDFLNQRVERYCSSISSPNKAF 222

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            G S+LS YL+ G LS R+   + +            G  S+ + L W   +   +   P
Sbjct: 223 TGCSRLSAYLTWGCLSMREVLQQSRTV-------KGRGVNSFGSRLHWHCHFIQKLEDEP 275

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S+   + F P    +  + D   LQAW +G TG P +DA MR L   GW++ R+R +  S
Sbjct: 276 SIEF-QDFHPLMRGLR-DFDRVKLQAWAEGRTGVPFVDACMRALRAHGWINFRMRAMLMS 333

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F   +L + WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG+  D
Sbjct: 334 FASYNLWLPWRQSGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGRDHD 391

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P+G FIRHW PEL +VP  YIH P       +L    P PIVD   +     N+ ++ ++
Sbjct: 392 PEGLFIRHWCPELRDVPEIYIHEPW------ELGGGMPSPIVDVTASMQEAKNRIWSIRR 445

Query: 480 QS 481
            +
Sbjct: 446 SA 447


>gi|146097530|ref|XP_001468129.1| DNA repair enzyme; Deoxyribodipyrimidine photolyase [Leishmania
           infantum]
 gi|134072496|emb|CAM71209.1| putative DNA repair enzyme [Leishmania infantum JPCM5]
          Length = 541

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 145/530 (27%), Positives = 214/530 (40%), Gaps = 68/530 (12%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQW---RQHGISARQ 57
           T    V L   R DLR+ DN  L A C  +      V+  F   P Q    R        
Sbjct: 22  TVREEVALFLFRRDLRVVDNTGLQALCDEAARRFIPVLPAFFFNPIQCDKKRNPYFGDAF 81

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F   SL+ +  + +Q        + S+ D      DS      V  L +N  Y    +
Sbjct: 82  FQFFCESLIDLDGA-AQLNGGLVCLRGSDEDCLQRIRDS---GYEVKVLGFNEDYTPFAL 137

Query: 118 RRDKLLEKRLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
            RD+LL      + I       D  L P   ++ ++ Q Y V+TPF         +    
Sbjct: 138 ARDRLLRAYADKQGIVCVTGPHDYSLRPLDEVVKNSEQPYSVFTPFYNKFTAEHARRVAV 197

Query: 176 SLPVPAIRLTGPVT--PSNIPRFFDYPFQAIDPMFP-----IGEQNALHILRKFCKEKVY 228
            LPV   ++   +   P             +    P      G    L  L   C E++ 
Sbjct: 198 PLPVNVSKVQSMLVSRPKKCMGHHLVDPALVYAHMPQVQDHGGRTEGLKRLA--CVERLK 255

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y + RD  A   TS LSP++  G +S R+ W+   +               +  +L+WR
Sbjct: 256 QYADARDDIAGDRTSHLSPHMKCGTVSTREVWHASVQAL--------GTGHPFTRQLVWR 307

Query: 289 EFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSHLLQAWKQ 328
           EFY  L    P +  G+                    PF P  +  +W+  +   +A+K+
Sbjct: 308 EFYAMLAFTRPRLLQGQLNSFIGQQDIVKATQPKQNAPFQPSYDNFKWSWKAEHFEAFKE 367

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG P++DAA+R L   GW HNR R++ ++F VK L +DWR  E +F +  +D D A+N
Sbjct: 368 GRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDAANN 427

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
           NGGW W++  G D+ PYFR FN   Q +RFDP   FI  W+PEL  VP   +H    +  
Sbjct: 428 NGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVHHWEGYCA 487

Query: 449 KN-------------------DLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +                    +   +YP PIVD K A    + ++    K
Sbjct: 488 RARGKATATHSRKRSGQGNAEEYPTSYPAPIVDIKAATKAVVEEFKKYSK 537


>gi|86137240|ref|ZP_01055818.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193]
 gi|85826564|gb|EAQ46761.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. MED193]
          Length = 502

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 112/479 (23%), Positives = 188/479 (39%), Gaps = 26/479 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR +D+ AL  A       V+ +++  P+ W+Q   S RQ  F+  +L ++
Sbjct: 1   MQVVWFKRDLRCSDHAALTRAAQ--VGPVLPLYVVEPDLWQQPDASHRQWCFVAETLAEL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127
           +  L  +G      Q S     +E L+    Q R++ L+ + +       +RD  +    
Sbjct: 59  RDDLKLRGQPLVVRQGSV----VEILEGLMRQGRLSALWSHEESGNGWTFQRDCRVAAWC 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   I          P   + NH +                L+     S P  A     P
Sbjct: 115 RDNGI----------PWHELQNHGVWRRLQSRDGWAKRWDRLMAQPCASAPQLAPVDIVP 164

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
            +                     G    L  L  F  ++  +Y      P       S+L
Sbjct: 165 GSIPTARDLG-LGSDVSPGRQSGGRGAGLERLESFLNQRGEHYQRAMSSPLEGTSACSRL 223

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSVC 302
           SPYL+ G +S R+           LL   KS      S+   L W   +   +   P + 
Sbjct: 224 SPYLAWGAVSMREVAQANAARQRALLPAEKSWRKSLRSFSGRLHWHCHFIQKIEDEPRIE 283

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                    +      D+  LQAW++G TG+P +DA MR L + GW++ R+R +  +   
Sbjct: 284 FENLHRLMDDLRPKTPDAARLQAWEKGETGYPFLDACMRCLRSTGWLNFRMRAMLMAVAA 343

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
             L +DWR   ++      D +   +    Q    +G   +   RI+NP  QG   DP G
Sbjct: 344 YHLWLDWRAPGQHLARMFTDYEPGIHWSQVQMQ--SGTTGINTVRIYNPVKQGFDQDPTG 401

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            FIR WLPEL  +P +++H P +  +  + +  +YP  I DH  A      + +  +++
Sbjct: 402 IFIRIWLPELAQIPDRHLHEPWAADNSAEVIGRHYPERIFDHMAAAKAAREKIWEVRRR 460


>gi|254283012|ref|ZP_04957980.1| DNA photolyase, putative [gamma proteobacterium NOR51-B]
 gi|219679215|gb|EED35564.1| DNA photolyase, putative [gamma proteobacterium NOR51-B]
          Length = 483

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 115/478 (24%), Positives = 194/478 (40%), Gaps = 23/478 (4%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W + DLR+ DN AL AA  +++  ++ +++  P   R      R  HFI  SL  +   
Sbjct: 1   MWFKRDLRLEDNAALSAAI-DANKPLLLLYLVEPRLLRDPHYRRRHWHFIAQSLRDLSSR 59

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRLQHR 130
           LS    +    +     D+ E          +  ++ + +  +     RD+ + +  Q +
Sbjct: 60  LSPHDTLLHVLEA----DAEEVFPRLHRTLGIATIYSHEETGLEVTYARDRWVSEFAQSQ 115

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            I     D +  P   +             + + +        L +LP     L   ++ 
Sbjct: 116 DI-----DWLEYPTNGVQRGRRNRKGWSRAWHQQMSAQPDSPRLNALPGRTPALPEALSG 170

Query: 191 SNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLSP 247
               R   +  +   P F   GE+ A   L  F + +V  Y      PA      S+LSP
Sbjct: 171 RVCRRLAQW--ETTHPQFQRGGERRAHETLNSFLEGRVAGYQRGISKPAASRNSCSRLSP 228

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           Y++ G LS RQ +  L++       + +  A  + + L W   +         +   +P 
Sbjct: 229 YIAWGNLSIRQVYQALQQAREKGQWRRQLAA--FESRLHWHCHFIQKFEMECRMEF-EPI 285

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                      D  L++AW +G TG+P+IDAAMR L   G+++ R R +  SFL   L  
Sbjct: 286 NRGYIPHRTEADPELVRAWCEGRTGYPLIDAAMRCLIATGYINFRSRAMLTSFLCHYLAQ 345

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWR G  +  S  LD +   +    Q     G   +   RI+NP  Q    DP G FI  
Sbjct: 346 DWRQGAAWLGSLFLDFEPGIHYA--QMQMQAGVTGINTIRIYNPVKQSMDHDPDGDFIAQ 403

Query: 428 WLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
           W+PEL  +P    H P   S +++   S +YP P+V  + +     ++ ++ KK   +
Sbjct: 404 WVPELAGLPAPLRHQPWEMSAMERMLYSCDYPDPVVSPESSYREARDRLWSLKKDPTI 461


>gi|313675112|ref|YP_004053108.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Marivirga tractuosa DSM 4126]
 gi|312941810|gb|ADR21000.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Marivirga tractuosa DSM 4126]
          Length = 495

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 117/492 (23%), Positives = 199/492 (40%), Gaps = 30/492 (6%)

Query: 1   MKATT--AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58
           M +       + LVWL+ DLR+ D+  L  A  N     I  +   P        S R  
Sbjct: 1   MTSPNEIKKPIALVWLKRDLRLEDHAPLQKAS-NIGLPTIIFYAWEPSLLASSDFSNRHW 59

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EV 117
           +FI  SL+++Q  LSQ     +        + I++L +   +  +  LF + +  +    
Sbjct: 60  NFIAESLIEMQSKLSQ----LEMSLIQVHTEVIDFLKAVQEKFDINYLFSHEETGLKITY 115

Query: 118 RRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD  ++   +   +  + F    L        +     K +  F    I  +   D+++
Sbjct: 116 ERDNAVKFFCENQNIEWQEFQQFGLQR---GRKNRQDWSKSWYEFMSKPIIKIDLNDIKT 172

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           + +    L G +  ++      Y  + I      G   A   L  F  ++ + Y +    
Sbjct: 173 IHLN--ELPGIILINDSEELNIYKEKGIAQ--TGGTAQAYKYLNSFLSDRHFGYNKNISK 228

Query: 237 PA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           PA   +  S+LSPYL+ G +S R  +  +           KS   ++ + L W   +   
Sbjct: 229 PAEARKSCSRLSPYLAYGNISMRVVFQSM---ISAKEHGNKSALNNFGSRLRWHCHFIQK 285

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                            + I  N++  L +AW++G TGFP++DA MR +   G+++ R+R
Sbjct: 286 FEMEDRYEFEN-INRGYDSIRQNENDILYEAWEKGETGFPLVDACMRCVTETGYLNFRMR 344

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SFLV  L   W+ G  +   Q LD +   +   +Q  A      +   R++NP  Q
Sbjct: 345 AMLVSFLVYHLWQPWKRGAMHLGRQFLDFEPGIHYPQFQMQAGVT--GINTIRMYNPVKQ 402

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACH 468
            K  DP G FI+ W+PEL NVP  +IH P             +L  +YP PI+D + A  
Sbjct: 403 SKEHDPNGDFIKKWVPELQNVPIAFIHEPWKLSYIEQKSIHFELGKDYPSPIIDLEDAGK 462

Query: 469 HTLNQYYAAKKQ 480
                 +  +K 
Sbjct: 463 KARKVIWEMRKD 474


>gi|148242284|ref|YP_001227441.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
 gi|147850594|emb|CAK28088.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
          Length = 503

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 115/473 (24%), Positives = 195/473 (41%), Gaps = 34/473 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW + DLR  D+ AL  A  +    V+ +FI  P  W Q   SARQ  F   SL +++
Sbjct: 25  QVVWFKRDLRTIDHGALSQASRSG--PVLPLFIVEPMFWAQPDASARQWEFCAESLAELR 82

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRLQ 128
           ++L+  G            +++  L +   Q+ + +L+ +++   +   RRD+L+ +  +
Sbjct: 83  EALAALGQPLVIRTG----EALAVLKALHRQRGIAQLWSHQETGNDFTYRRDRLVARWCR 138

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            + I      S  +        A+     + P  + L++  V AD   L        G +
Sbjct: 139 EQSIRWHQPRSFGVI------RAMGNRDGWAPAWELLMRQSVCADPAPLTRLGGIDPGGI 192

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246
             ++  +    P          G      +L  F   +   Y ++   P  A +  S+LS
Sbjct: 193 PSADDLKL---PSDPCPGRQRGGRSQGAALLESFLHHRGRRYAKELSSPLTAFESCSRLS 249

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            +L+ G LS R+     +           +G  +++  L W   +   +   PS+     
Sbjct: 250 AHLTFGTLSMREIVQTAR---------LNNGPKAFVERLHWHCHFIQKLESQPSLEYQNA 300

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                + +    D   L  W +G TG+P +DA MR L   GW++ R+R +  S     L 
Sbjct: 301 HRA-YDGLR-ADDPQRLALWIEGRTGWPFVDACMRALRHHGWINFRMRAMLMSVASYQLW 358

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + WR   E      +D +   +    Q    +G   +   RI+NP  QG   DP+G FIR
Sbjct: 359 LPWRQSGEALARLFVDYEPGIHWNQCQMQ--SGTSGINTVRIYNPIKQGLDHDPEGAFIR 416

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            WLPEL  VP   IH P       +    YP P+VD++ A     +Q +  +K
Sbjct: 417 QWLPELQGVPVSGIHTPWLLAQPPE---TYPHPVVDYEAAARQARDQVWGLRK 466


>gi|48478134|ref|YP_023840.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790]
 gi|48430782|gb|AAT43647.1| deoxyribodipyrimidine photolyase [Picrophilus torridus DSM 9790]
          Length = 431

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 141/460 (30%), Positives = 227/460 (49%), Gaps = 47/460 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQ 67
           ++L   R DLR+ DN AL  + +N  A +   FI  P Q + +   S +  +F+ +SL  
Sbjct: 1   MNLFIFRRDLRLYDNTALLKSLNNETATI---FIMDPAQVKNNEYRSEKALNFMISSLYD 57

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR- 126
           +   +                D ++ L     ++ + +++ NR Y    ++RD+ +++  
Sbjct: 58  LMTDIEGNHGKLAVFHG----DPVDVLKRLVNRENINEIYINRDYTPFSIKRDERIKEFS 113

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +++ +   + DD  L  P  +   +   +K +T F    ++  V+  +    +    L  
Sbjct: 114 IKNNIKFNALDDYFLSDP-ELRTGSGSFFKNFTAFYNRAMEINVKKPV--YEIKKSNLIP 170

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                   ++ +Y           G + A+  +  F K         RD P +  TS LS
Sbjct: 171 IDGDDMELKYNNY-----------GRKTAIEKMHNFIKNDYS----LRDFPELNMTSFLS 215

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
             +  G +S R+ ++ +K+               +  +L WR+FY ++   +P V  G  
Sbjct: 216 ADIKFGNISIREAYHYIKD-------------PEFRRQLYWRDFYLYIAYHFPYV-FGSN 261

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F      I+W      + AWK G TG+PI+DAAMR LN  G+++NRLRMI +SFLVKDL 
Sbjct: 262 FNRKY-NIKWENKEKYIDAWKNGLTGYPIVDAAMRSLNETGYINNRLRMIVSSFLVKDLH 320

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           VDWRIGE+YF  +L+D D ASNNG WQW ASTG +S   +RI NP IQ K+FDP+  FI+
Sbjct: 321 VDWRIGEKYFAQKLIDYDPASNNGNWQWVASTGVNSRGMYRIINPWIQQKKFDPECKFIK 380

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
            ++ EL+++  + IH  +          NYP P+VDHK A
Sbjct: 381 RYVNELSDLEPEIIHNLYKIRLN-----NYPAPLVDHKTA 415


>gi|313676689|ref|YP_004054685.1| cryptochrome, dash family [Marivirga tractuosa DSM 4126]
 gi|312943387|gb|ADR22577.1| cryptochrome, DASH family [Marivirga tractuosa DSM 4126]
          Length = 475

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 135/483 (27%), Positives = 234/483 (48%), Gaps = 35/483 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-- 58
           MK     S  L+W R +LR+ DN+AL     NS+  ++ ++I    +W+++ +  ++S  
Sbjct: 1   MKKKHRKS--LIWFRKNLRLKDNQALLEGVQNSEKYLL-LYIFDEREWKKNPVGLKRSSD 57

Query: 59  ---HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
              +F++ S+L +++++  KG      +     D+ + +    ++ +   L+  ++    
Sbjct: 58  KKLNFLWQSVLDLKQNIEAKGGQLVMLKG----DAEDLIQRLSIENKFDALYAPKESGTE 113

Query: 116 EVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           E   +K +E    +HR     +  + L     I     ++  ++T FRK   +N  Q  +
Sbjct: 114 EFELEKSVEDFFIKHRAKVDFYAQTTLFHEDDIPWPIGKLPDIFTQFRK---ENEKQTGV 170

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKE--K 226
           R L      L+  +    +  F D    +I P       F  GE +A   L  +  +  +
Sbjct: 171 RDLFESPEDLSASIPVKEVFEFSDLAIGSISPEEKSVLNFQGGETHAWERLEYYFWDSDQ 230

Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           +  Y   R+ +   + +S+ SP+L++G +SP+  + ++K+   +   K     +  + EL
Sbjct: 231 LKEYKNTRNGLLGERYSSKFSPWLALGCISPKSIYYQVKQYEKER--KKNQSTYWMIFEL 288

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           IWR+++  ++  + +    K  I   + ++W  D  L + WK   TG P IDA MR+LN 
Sbjct: 289 IWRDYFHFVLKKFGAQLFQKEGIKG-KGVDWKWDLELFEKWKTAETGVPFIDANMRELNA 347

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R   ASFLVKDL +DWR+G  YF  QL+D D+ASN G W + A  GND    
Sbjct: 348 TGFMSNRGRQNVASFLVKDLGLDWRMGAWYFEHQLIDYDVASNWGNWAYVAGVGNDPREN 407

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLP 459
            R FN   Q K++D +G ++RHW+PEL  +    IH      +     LN      Y  P
Sbjct: 408 -RYFNILSQAKKYDVKGDYVRHWIPELKEIEGFNIHKVSLMNEVALEKLNLIIPDIYLRP 466

Query: 460 IVD 462
           +VD
Sbjct: 467 VVD 469


>gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus]
          Length = 534

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 109/485 (22%), Positives = 196/485 (40%), Gaps = 36/485 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           +++W R+ LR+ DN +L++A  ++ +    +FI   E      +   +  ++  +L  + 
Sbjct: 5   NVIWFRHGLRLHDNPSLHSALEDASSPFFPIFIFDGETAGTKMVGYNRMRYLLEALNDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +   + G      +                +  +  L + +  E     RD  +    + 
Sbjct: 65  QQFRKYGGKLLMIKGRPDL----IFRRLWEEFGIRTLCFEQDCEPIWRPRDASVRALCRD 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V C+      L  P +++     +  +        ++ +         V    +    
Sbjct: 121 IGVSCREHVAHTLWNPDTVIKANGGIPPLTYQMFLHTVEIIGNPPRPVDDVDLNGVNFGS 180

Query: 189 TPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVY----- 228
            P +  R F    +A  P                +  GE  AL  +++    +       
Sbjct: 181 LPESFYREFVVFDKAPKPEDLGVFLENEDIRMIRWVGGETAALKQMQERLAVEYETFCRG 240

Query: 229 YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y+     P + G    LSP L  G LS R+ +  L++ F  +     +       +LIW
Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRRFYWSLQDLFQQVHQGRLASTQFITGQLIW 300

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTI 346
           RE++  +    P+        P    I W +     LQ WK+G TGFP +DAAMRQL T 
Sbjct: 301 REYFYTMSVNNPNYA-QMSGNPICLDIPWKEPENDELQRWKEGRTGFPFVDAAMRQLRTE 359

Query: 347 GWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VP 404
           GW+H+ +R   ASFL +  L + W  G ++F+  LLD D +   G W W +S+  ++ + 
Sbjct: 360 GWLHHVVRNTVASFLTRGTLWLSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFEALLD 419

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPL 458
                 P   G+R +P G ++R ++PEL  +P +YI+ P     +        +  +YP 
Sbjct: 420 SGECACPVRLGRRLEPTGHYVRRYVPELARMPGEYIYEPWRAPLEVQEAAGCVIGRDYPA 479

Query: 459 PIVDH 463
           P+VDH
Sbjct: 480 PVVDH 484


>gi|15899214|ref|NP_343819.1| deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus P2]
 gi|13815773|gb|AAK42609.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
           (photoreactivating enzyme). (phrB) [Sulfolobus
           solfataricus P2]
          Length = 433

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 140/475 (29%), Positives = 217/475 (45%), Gaps = 49/475 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +      V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F   +    ++  +++      +    
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIKKPVQNNYTNYYK---- 167

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     D            G +  + ++ +    +   Y +++D  A    + LSP
Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P 
Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 IEW  +  L QAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK L++
Sbjct: 265 KREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLII 324

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I+ 
Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKR 382

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           W+ EL +   + IH  + +  K+     YP PIVD +   +     Y   +K  +
Sbjct: 383 WVDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|323476401|gb|ADX81639.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus HVE10/4]
          Length = 433

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 142/475 (29%), Positives = 219/475 (46%), Gaps = 49/475 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +      V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F   +    ++  +++      +    
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     D            G +  + ++ +    +   Y +++D  A    + LSP
Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P 
Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 IEW  +  LLQAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK LL+
Sbjct: 265 KREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLLI 324

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +++ 
Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKR 382

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           W+ EL +  ++ IH  + +  K     NYP PIVD +   +     Y   +K  +
Sbjct: 383 WVDELESYDSEIIHNAYKYTLK-----NYPKPIVDWRIRVNLAKRFYEVCRKSKI 432


>gi|313620250|gb|EFR91701.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378]
          Length = 302

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 131/282 (46%), Positives = 171/282 (60%), Gaps = 13/282 (4%)

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           P F  GE+ A   L  F KE +  Y + RD+PA+  TS LS YL  G +S R  W  L++
Sbjct: 24  PAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKTSHLSRYLRTGEISIRTVWQALQK 83

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
           E      +   G  ++  EL WR+FY  +   +P     +P       IEW  +    + 
Sbjct: 84  E------EATEGRATFEKELCWRDFYNMIYVSFPKQ-KNEPIQENYRFIEWENNREFFKK 136

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W+ G TGFP++DAAMRQL   GWMHNRLRMITASFL KDLL+DWR GE+YF   L+D D 
Sbjct: 137 WQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDP 196

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           ASN GGWQWAASTG D+VPYFRIFNPT Q ++FDP GTFIR ++ EL ++P ++IH P  
Sbjct: 197 ASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFDPDGTFIRKYVKELRDLPDKFIHQPEK 256

Query: 446 WLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
             +         L  +YPLPI+DHK+     + +Y  +K+ S
Sbjct: 257 MSETEQKEHGLILGKDYPLPIIDHKERRKLAIARYEFSKEHS 298


>gi|291296619|ref|YP_003508017.1| Deoxyribodipyrimidine photo-lyase [Meiothermus ruber DSM 1279]
 gi|290471578|gb|ADD28997.1| Deoxyribodipyrimidine photo-lyase [Meiothermus ruber DSM 1279]
          Length = 433

 Score =  312 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 132/424 (31%), Positives = 203/424 (47%), Gaps = 24/424 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVW R DLR+ DN AL  A        + + +  P   +    + R+  + Y +   +
Sbjct: 1   MNLVWHRADLRLHDNPALAEALRTG--PAVGLVVLDPNILQ--NTTPRRRAWFYQNTQAL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++ + +G +        +    E L     +  V ++F  R        RD+ + + L 
Sbjct: 57  REAYAARGGLLLVRSGLPW----EVLPRVAAELGVQRVFAVRNSTPYARFRDQKVGEALP 112

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            R   +      +  PG+I+      Y V+TP+ K             + + A     P 
Sbjct: 113 GR--LRWLPGQYIHEPGTIVKPDGGGYTVFTPYSKRWWAA-----PEPVLLEAPAHFPPF 165

Query: 189 TPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +          P +A D P+ P GE  AL  L  F ++K+ +Y + RD  A +G S+LS 
Sbjct: 166 SLPPDYDPGAIPQEASDVPLPPAGEAAALKALEVFLRDKLPHYHQTRDGLAGEGVSRLSY 225

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           Y ++GVLSPR    +  +           GA  W+NEL WR+F   L+   P +   + F
Sbjct: 226 YFTLGVLSPRLAARKALQV-------GGEGARKWVNELCWRDFSGDLLYHRPQMMT-QAF 277

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
            P  E + WN DS + +AW  G TG P++DA MR+L   G++ NR RM+ A F VK  L+
Sbjct: 278 DPRWEGLPWNHDSEVFEAWLHGQTGIPVVDACMRELQATGFLSNRGRMVVAQFAVKLALL 337

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W+  E  F + LLDGD ASN  GW WA   G D+ PYFR+FN   Q +  DPQG +++ 
Sbjct: 338 PWQKCERAFRNLLLDGDNASNLQGWHWAGGLGVDAAPYFRVFNLITQAETHDPQGLWLKR 397

Query: 428 WLPE 431
           W+PE
Sbjct: 398 WVPE 401


>gi|145881071|gb|ABP97099.1| cryptochrome CRY2 [Acropora millepora]
          Length = 520

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 127/496 (25%), Positives = 207/496 (41%), Gaps = 38/496 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L W R DLR+ DN +L     NS      V+   P + +Q  +S  +  F+  SL  +
Sbjct: 19  TSLHWFRKDLRLHDNPSLRECLRNSKVF-YGVYFLPPSEAKQGSVSLNRWGFLLESLRDL 77

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL + G      +     + +E L +   +  + ++ +    E     RD ++    +
Sbjct: 78  DTSLVECGSRLFVIRG----NPVEMLPNLFKKWNINQMSFEVDSEPYSNSRDLVISHLAK 133

Query: 129 HRVI-CKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              I   S     L  P  +    +  +  ++  F+++++Q   +   + +P    +L G
Sbjct: 134 ENGIEVISRVSHTLYDPRILRGLSSGIVPLLFDEFKESVLQK--RQPEKPVPKVGRKLFG 191

Query: 187 PVTPS---------NIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKVYYYV 231
                          +PR  +   +          ++  GE  AL  +    +  V    
Sbjct: 192 ACVTPVGSDHQQCYGVPRLDEIGGKFSKSGSVCSELYKGGESEALKRMETALQWMVKNDF 251

Query: 232 EQRDIP---AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            + +I     +   + LSPYL  G LSPR    R+ EE++    K  S       +L+WR
Sbjct: 252 TEPEITIHSLLXSATHLSPYLRCGCLSPRLLHQRITEEYIK--SKGVSPPSELFVKLLWR 309

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF+  +    P         P + +I W      L+ WK+G TGFP IDA MRQL T GW
Sbjct: 310 EFFFVVGGQIPD-AHEMINNPISLEIPWEDSVEYLERWKKGTTGFPWIDAIMRQLRTEGW 368

Query: 349 MHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +HN  R   ASFL +  L V+W  G + F    LD + + N G W W +++     P   
Sbjct: 369 IHNIARRAVASFLTRGCLWVNWEEGFKVFDEFQLDAERSLNVGNWLWVSTSTFVKGPVP- 427

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIV 461
            F P   GK+ DP G ++R ++PE+ N+PT+YI  P              +  +YP PIV
Sbjct: 428 WFCPVGVGKKIDPTGEYVRKYVPEIRNLPTEYIFEPWLTPRDLQRSYGCVIGRDYPAPIV 487

Query: 462 DHKKACHHTLNQYYAA 477
           +H K     + +    
Sbjct: 488 NHVKQRAICVQRMQEL 503


>gi|114798846|ref|YP_761758.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
           neptunium ATCC 15444]
 gi|114739020|gb|ABI77145.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
           neptunium ATCC 15444]
          Length = 536

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 114/492 (23%), Positives = 203/492 (41%), Gaps = 33/492 (6%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +   VH++W + DLR+ D+ A  AA   S A ++ ++I  P  W     S RQ  F+  S
Sbjct: 6   SMSGVHVIWFKRDLRVHDHAA-LAAAVASGAPILPLYIFEPGYWALPEHSRRQFDFVRDS 64

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLL 123
           L ++  +L  +G        S    +I+   +   +  +  +  + +  +     RD+ +
Sbjct: 65  LEELDAALKARGTKLVIRMGS----AIDVFSALHQKHGIAAIHAHEETGLQWTFDRDRAV 120

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +  ++  I      S+   P + +  ALQ    +    +A ++        +L   A  
Sbjct: 121 RRWARNAGI------SLREQPQNGVQRALQSRDGWANQWEAFMRRPRLVAPEALKPSAAD 174

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241
                 P +    F             G   A+  LR F + +   Y +    P  A   
Sbjct: 175 SEEWPLPQD----FGLGADDCPQRQKGGRMAAVDCLRSFLESRGRTYQKSMSSPLTAADA 230

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG----AFSWLNELIWREFYRHLMAF 297
            S+LSP+L+ G +S R+ W   ++   +      +G      S+++ L W   +   +  
Sbjct: 231 CSRLSPHLAFGTVSIREAWQAAQKAQHEHGRSGDTGFAASIGSFISRLQWHCHFIQKLED 290

Query: 298 YPSVCMGKPFIPWTEKIEWNK--DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             S+   +   P  + +          L AW +G TGFP +DA MR L   GW++ R+R 
Sbjct: 291 QTSI-ESRNLHPGYDGLRPEPLAGDPRLAAWIEGRTGFPFLDACMRSLRETGWLNFRMRA 349

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +   F    L +DW+   E+  +   D +   +    Q    +    +   RI+NP  Q 
Sbjct: 350 MVMGFASHHLWLDWKQPAEHLAALFTDFEPGIHYPQAQMQ--SATTGMNTPRIYNPVKQS 407

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           +  DP G FIR W+PEL+ +P +++HAP              L   YP+ IVDH  A   
Sbjct: 408 QDQDPDGAFIRRWVPELSGLPAEWLHAPWEAPASVRARAGIVLGQTYPMRIVDHMAAAEE 467

Query: 470 TLNQYYAAKKQS 481
             ++ +A +K++
Sbjct: 468 ARSRIFAVRKRA 479


>gi|322502106|emb|CBZ37189.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 541

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 145/530 (27%), Positives = 215/530 (40%), Gaps = 74/530 (13%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQW---RQHGISARQ 57
           T    V L   R DLR+ DN  L A C  +      V+  F   P Q    R        
Sbjct: 22  TVREEVALFLFRRDLRVVDNTGLQALCDEAARRSIPVLPAFFFNPIQCDKKRNPYFGDAF 81

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F   SL+ +  + +Q        + S+ D      DS      V  L +N  Y    +
Sbjct: 82  FQFFCESLIDLDGA-AQLNGGLVCLRGSDEDCLQRIRDS---GYEVKVLGFNEDYTPFAL 137

Query: 118 RRDKLLEKRLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
            RD+LL      + I       D  L P   ++ ++ Q Y V+TPF              
Sbjct: 138 ARDRLLRAYADKQGIVCVTGPHDYSLRPLDEVVKNSEQPYSVFTPFYNKFTAEHAHRVAV 197

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKE 225
            L V   ++   +      R   +    +DP              G    L  L   C E
Sbjct: 198 PLLVNVSKVQSMLVSQPKKRMEHH---LVDPALVYAHMPQVQDHGGRTEGLKRLA--CVE 252

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           ++  Y + RD  A   TS LSP++  G +S R+ W+          ++       +  +L
Sbjct: 253 RLKQYADARDDIAGDRTSHLSPHMKCGTVSTREVWHA--------SVRALGTGHPFTRQL 304

Query: 286 IWREFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSHLLQA 325
           +WREFY  L    P +  G+                    PF P  +  +W+  +   +A
Sbjct: 305 VWREFYAMLAFTRPRLLQGQLNSFIGQQDIVKATQPKQNAPFQPSYDNFKWSWKAEHFEA 364

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           +K+G TG P++DAA+R L   GW HNR R++ ++F VK L +DWR  E +F +  +D D 
Sbjct: 365 FKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDA 424

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           A+NNGGW W++  G D+ PYFR FN   Q +RFDP   FI  W+PEL  VP   +H    
Sbjct: 425 ANNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVHHWEG 484

Query: 446 WLDKN-------------------DLSLNYPLPIVDHKKACHHTLNQYYA 476
           +  +                    + S +YP PIVD K A    + ++  
Sbjct: 485 YCARARGKATVTHSRKRNGQGNAEEYSTSYPAPIVDIKAATKAVVEEFKK 534


>gi|157874739|ref|XP_001685786.1| DNA repair enzyme; Deoxyribodipyrimidine photolyase [Leishmania
           major strain Friedlin]
 gi|68128859|emb|CAJ06003.1| putative deoxyribodipyrimidine photolyase [Leishmania major strain
           Friedlin]
          Length = 541

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 144/530 (27%), Positives = 214/530 (40%), Gaps = 74/530 (13%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQW---RQHGISARQ 57
           T    V L   R DLR+ DN  L A C  +      V+  F   P Q    R        
Sbjct: 22  TEREEVALFLFRRDLRVVDNTGLQALCDEAVRRSIPVLPAFFFNPIQCDKKRNAYFGDAF 81

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F   SL+ +  + +Q        + S+ D      DS      V  L +N  Y    +
Sbjct: 82  FQFFCESLVDLDGA-AQLNGGLVCLRGSDEDCLRRIRDS---GYEVKVLGFNEDYTPFAL 137

Query: 118 RRDKLLEKRLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
            RD+LL      + I       D  L P   ++  + Q Y V+TPF         +    
Sbjct: 138 ARDRLLRDYADKQGIVCVTGPHDYSLRPLDEVVKDSEQPYSVFTPFYNKFTAEHARKVAV 197

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKE 225
            L V   ++   +          +    +DP              G    +  L   C E
Sbjct: 198 PLMVNVSKVQAMLVSQPKKCLEHH---LVDPALVYTHMPQVQDHGGRTEGMKRLA--CVE 252

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           ++  Y + RD  A   TS LSP++  G +S R+ W+   +              ++  +L
Sbjct: 253 RLKQYADVRDDIAGDRTSHLSPHMKCGTVSTREVWHASVQAL--------GTGHAFTRQL 304

Query: 286 IWREFYRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSHLLQA 325
           +WREFY  L    P +  G+                    PF P  +  +W+  +   +A
Sbjct: 305 VWREFYAMLAFTRPRLLQGQLNSFIGQQDIVKATQPKQNAPFQPLYDNYKWSWKAEHFEA 364

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           +K+G TG P++DAA+R L   GW HNR R++ ++F VK L +DWR  E +F +  +D D+
Sbjct: 365 FKEGRTGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDV 424

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           ASNNGGW W++  G D+ PYFR FN   Q +RFDP   FI  W+PEL  VP   +H    
Sbjct: 425 ASNNGGWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAKVPPSVVHHWEE 484

Query: 446 WLDKN-------------------DLSLNYPLPIVDHKKACHHTLNQYYA 476
           +  K                    +   +YP PIVD K A    + ++  
Sbjct: 485 YCAKARGRATATHSRKRSGQVKAKEYPTSYPAPIVDIKAATKAIIEEFKK 534


>gi|311894408|dbj|BAJ26816.1| putative deoxyribodipyrimidine photo-lyase [Kitasatospora setae
           KM-6054]
          Length = 441

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 144/456 (31%), Positives = 218/456 (47%), Gaps = 31/456 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ +V    DLR+ DN AL+AA   +D +V+ +F+  P        +  +  F+   L 
Sbjct: 1   MTLAIVLFTQDLRLHDNPALHAAHTRAD-QVVPLFVTDPAVAAAGFAAPNRVAFLSGCLA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++  +L + G      +     D+ E       +   T +           RR++ L + 
Sbjct: 60  ELDAALRRTGSRLTVREG----DTAEQTAKLAAETGATAVHVAAGVSTYARRREQRLRRA 115

Query: 127 LQHRVICKSFDDSVL-LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           L  R      D S+  +PPG++       Y V+TP+ +A  Q   +A L +         
Sbjct: 116 LGER--LHVHDGSLTAVPPGAVRPIGRDHYAVFTPYLRAWQQTPRRAPLPAPRALRTPDD 173

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            P  P                +   GE  A    + +  +    Y +  D  A   TS L
Sbjct: 174 LPSAPLPTAT------PTARRLPDPGEAAARRTWQHWHAD---DYADLHDALADDATSHL 224

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G LS  +  +  ++       +  +GA ++  +L+WR+F+  ++A  P+     
Sbjct: 225 SPYLHFGCLSANELAHLAEQ-------RGGTGAEAFARQLVWRDFHHQVLAARPAAA-HS 276

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            + P    + W+ D     AW+ G TGFP+IDAAMRQL   GWMHNR R++TASFL K L
Sbjct: 277 DYRP--RPVPWHNDPDEFAAWRDGRTGFPVIDAAMRQLAETGWMHNRARLLTASFLSKSL 334

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
             DWR G  +F+  L+DGDLA+N   WQW A TG D+ P  R+ NP +Q  R DP+GT++
Sbjct: 335 HHDWRPGAAHFLHHLVDGDLANNQLNWQWTAGTGTDTRP-NRVLNPLVQADRHDPEGTYV 393

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           R WLPEL ++PTQ IH P   L       +YP PI+
Sbjct: 394 RRWLPELAHLPTQDIHRPWQSLL---CPADYPDPII 426


>gi|33866289|ref|NP_897848.1| putative deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           8102]
 gi|33639264|emb|CAE08272.1| putative deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           8102]
          Length = 491

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 120/479 (25%), Positives = 191/479 (39%), Gaps = 39/479 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+ +VW + DLR+ D++ L  A       V+ +++  PE W+Q   S RQ  F   SLL+
Sbjct: 3   SLQIVWFKRDLRVDDHRPLLEAAARG--PVLPLYVVEPELWQQPDASERQWLFCRESLLE 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126
           ++++L++ G            D ++ L+    Q  V  L+ + +       +RDK +   
Sbjct: 61  LRQALAELGQPLVVRSG----DVVQVLERARRQFGVDGLWSHEETGNGWTYQRDKRVGAW 116

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRL 184
            +   I            G I    +              +  +   +   P  VPA+  
Sbjct: 117 ARAHGI----------QWGEIRQFGVTRRMRSRNGWAKRWEEQMAEPITPAPAGVPALEE 166

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
             P      P     P          G    L  LR F + +   Y      P  A  G 
Sbjct: 167 IDPGVIPERPCPELLP-DDCSQRQTGGRSIGLGELRDFLQHRAPCYQRAMSSPKSAFTGC 225

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LS YL+ G LS R+     +            G  S+ + L W   +   +   P + 
Sbjct: 226 SRLSAYLAWGCLSMREVLQTSRHH-------SGRGVSSFESRLHWHCHFIQKLEDQPEIE 278

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               F P+   I    ++  L AW +G TG P +DA MR L   GW++ R+R +  SF  
Sbjct: 279 FS-DFHPYMRGIR-ETNAERLAAWTEGRTGVPFVDACMRALKAHGWINFRMRAMLMSFAS 336

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L + WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG   DPQG
Sbjct: 337 YNLWLPWRDSGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGMDHDPQG 394

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            FIR W PEL +V T +IH P        L      PIVD   +     ++ +  ++ +
Sbjct: 395 VFIRQWCPELKDVSTIHIHEPWM------LGGGRSAPIVDVTTSMQLAKDRIWEIRRSA 447


>gi|2126786|pir||I39818 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) - Bacillus firmus
           (fragment)
 gi|142783|gb|AAA22361.1| DNA photolyase [Bacillus firmus]
          Length = 339

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 142/340 (41%), Positives = 190/340 (55%), Gaps = 15/340 (4%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--TGPVTPSNIPRFFDYPFQ 202
             +L      YKV+TP+ KA  +   +          +     G          F+   +
Sbjct: 1   DQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDVLLGSVHKGTAPDREAETLFNNLIK 60

Query: 203 AIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
                +  IGE++A+  L+ F K+++  Y   RD P+I GTS+LSPY+  G +S R  + 
Sbjct: 61  KCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSITGTSRLSPYIKTGAVSSRSIYY 120

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            +     D        A ++L EL WR+FYR +  + P  C  +  +    ++ W+ D  
Sbjct: 121 HILNAEADSY-----SAETFLKELAWRDFYRMVHFYEPD-CKDREIMEGYRELNWSHDQD 174

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
            L +WK+G TGFPI+DA MRQL   GWMHNRLRMITASFL KDLL+DWR+GE YF   L+
Sbjct: 175 DLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLI 234

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D +SN GGWQWAAS G D+VPYFRIFNP  Q KRFD  GT+IR ++PELN+VP  YIH
Sbjct: 235 DYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRTYIPELNHVPDHYIH 294

Query: 442 APHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
            P    +      K  L  +YPLPIVDH K     L+ + 
Sbjct: 295 EPWKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALSFFK 334


>gi|322510954|gb|ADX06267.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake
           phycodnavirus 2]
          Length = 439

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 147/473 (31%), Positives = 224/473 (47%), Gaps = 40/473 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSHFIYASLLQV 68
            +     D R  DN  L  A  + D  +I +FI TPEQ ++   +S     F+  SL ++
Sbjct: 3   TIFIFHRDYRSFDNLGLNYAMKHFD-HIIPIFIFTPEQIKKNKYLSNNSLQFLCESLEEL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL- 127
           +       I         + D+++ L        ++ + +N+ Y    + RD+ ++    
Sbjct: 62  RDH-----IPLHI----FYGDNLKVLSKINKTIPISNIVFNKDYTPYAIERDQSIDSWCV 112

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  + C   +D +L P G         Y VYTPF+  ++++ +           I     
Sbjct: 113 KKNINCVQIEDYLLSPIGRFNKTDGSPYVVYTPFKNNVLKHSIPNTQNHPLKHLIYHKPL 172

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              S      DY           G +N L  L          Y +Q  I     T+QLS 
Sbjct: 173 EHISYYSPNLDYYTYNPHNNVKGGRKNGLKYLHTNI-----DYEDQLSI----KTTQLSA 223

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK-P 306
           Y+  G LS R+ ++  K+E +               +LIWREFY ++  +YP++      
Sbjct: 224 YIKYGCLSIREVYHHFKDENLKA-------------QLIWREFYYYINYYYPNLLKKSVA 270

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F    +KI+W  +   L+ WK+G TGFP++DA MRQLN  G+MHNR R+I ++FL + L 
Sbjct: 271 FQMKYDKIKWVNNKKHLEWWKRGETGFPVVDACMRQLNKTGYMHNRGRLIVSNFLNRLLG 330

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKRFDPQGTFI 425
           +DWR+GE YF  QL+D D   NNG WQW +S G D+ PY  R+FNP +Q KRFDP   +I
Sbjct: 331 LDWRLGELYFAQQLIDYDPCVNNGNWQWVSSVGIDTKPYSQRVFNPWLQSKRFDPHCIYI 390

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + W+PELN+VP   IH      D +     Y LPI+D+  A   +L  Y   +
Sbjct: 391 KEWIPELNDVPPNEIHQWDLHGDPDI----YILPIIDYTMARERSLQMYRTIQ 439


>gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 130/492 (26%), Positives = 214/492 (43%), Gaps = 50/492 (10%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57
                V +VW RNDLR+ DN+AL  A  +S A V+ V+   P  +            A +
Sbjct: 84  RNGSGVAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALR 142

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           + F+   L  ++++L  +G+              E L S         ++ +++    E+
Sbjct: 143 AQFLIECLADLKRNLMNRGLNLLIQHGKPE----EILPSLAKTFEAHTVYAHKETCSEEL 198

Query: 118 RRDKLLEKRLQHRVI-----------------CKSFDDSVLLPPGSILNHALQMYKVYTP 160
             ++L+   L+  V+                  +    S +     +      +  VYT 
Sbjct: 199 NVERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQ 258

Query: 161 FRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215
           FRK++     I+  ++      P P I   G V   +     +         F  GE  A
Sbjct: 259 FRKSVESKCTIRICIRTPTLLGPPPNIEDWGSVPSIDQLGLHEEKVSR-GMRFIGGEAAA 317

Query: 216 LHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
           L  + ++  +K     Y   R+ +     +++ SP+L+ G LSPR  +  +K    +   
Sbjct: 318 LSRVNEYFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKRYEKER-- 375

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
           +     +  L ELIWR+++R L   Y +           E   W++D  + +AW+ G TG
Sbjct: 376 QANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGPRKVEA-RWSQDQTMFEAWRDGCTG 434

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P+IDA M++L+  G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W
Sbjct: 435 YPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 494

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452
            + A  GND     R F+   Q K +DP+G ++  WLPEL  +P    + P         
Sbjct: 495 TYGAGVGNDPRE-DRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP--------- 544

Query: 453 SLNYPLPIVDHK 464
             +Y   IV  K
Sbjct: 545 GKSYINQIVPLK 556


>gi|322494540|emb|CBZ29842.1| putative DNA repair enzyme [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 541

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 140/525 (26%), Positives = 216/525 (41%), Gaps = 74/525 (14%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQW---RQHGISARQSHFIY 62
           V L   R DLR+ DN  L A C+ +      V+  F   P Q    R          F  
Sbjct: 27  VALFLFRRDLRVVDNTGLQALCNEAARRSIPVLPAFFFNPIQCDKKRNPYFGDAFFQFFC 86

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL+ +  + +Q        + S+ +D +  +     + +V  L +N  Y    + RD+L
Sbjct: 87  ESLVDLDGA-TQLNGGLVCLRGSD-EDCLRRIRDGGYEVKV--LGFNEDYTPFALVRDRL 142

Query: 123 LEKRLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           L      + I       D  L P   ++  + Q Y V+TPF         +   + L V 
Sbjct: 143 LRDYADKQGIVCVTGPHDYSLRPLDEVVKDSEQPYSVFTPFYNKFTAEHARKVAKPLLVN 202

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMF----------PIGEQNALHILRKFCKEKVYYY 230
             ++   +          +    +DP              G    L  L   C E++  Y
Sbjct: 203 VRKVQSMLVSQPKKCLEHH---LVDPALLYTHMPQVQDHGGRTEGLKRLA--CVERLKQY 257

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            + RD  A   TS LSP++  G +S R+ W+   +               +  +L+WREF
Sbjct: 258 ADVRDDIAGDCTSHLSPHMKCGTVSTREVWHASVQAL--------GTGHPFTRQLVWREF 309

Query: 291 YRHLMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSHLLQAWKQGY 330
           Y  L    P +  G+                    PF P  +  +W   +   +A+K+G 
Sbjct: 310 YAMLAFTRPRLLQGQLNSFIGQKDIVKATQPKQNAPFQPSYDDYKWRWKAEHFEAFKEGR 369

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG P++DAA+R L   GW HNR R++ ++F VK L +DWR  E +F +  +D D+A+NNG
Sbjct: 370 TGVPLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVANNNG 429

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
           GW W++  G D+ PYFR FN   Q +RFDP   F+  W+PEL  VP   +H    +  + 
Sbjct: 430 GWLWSSGQGADAQPYFRTFNAFRQSERFDPDCKFVFQWVPELAKVPPSVVHHWEEYCARA 489

Query: 451 -------------------DLSLNYPLPIVDHKKACHHTLNQYYA 476
                              +   +YP PIVD K A    + +Y  
Sbjct: 490 RDKATGTYSRKRGAQGKAEEYPTSYPAPIVDIKAATKAVIEEYKK 534


>gi|87303611|ref|ZP_01086390.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
 gi|87281835|gb|EAQ73799.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
          Length = 508

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 115/484 (23%), Positives = 193/484 (39%), Gaps = 40/484 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V +VW + DLR+ D++ L  A       V+ + +  PE WRQ   SARQ  F   SL  
Sbjct: 3   PVQVVWFKRDLRVADHQPLLQASFLG--PVLPLMVVEPELWRQSDASARQWDFCAESLED 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKR 126
           ++++L+  G               E L+    +  +  L+ +++        RD+ + + 
Sbjct: 61  LRRALAGLGQPLVVR----IGTVEEVLERARCRFGIAGLWSHQETGNGWTYARDRRVARW 116

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            +   I         +P   ++            +   + + +V       P  A++   
Sbjct: 117 AKSHSIPWIE-----IPSFGVIRRLGSRNGWARRWEARMAEPMVP------PPEALQPLA 165

Query: 187 PVTPSNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
            + P  IP   +              G Q    +L  F   +   Y  +   P  A +  
Sbjct: 166 GLDPGAIPSASELGLAPDPCPGRQVGGRQQGQAVLESFLNGRGARYHRELSSPRTAFESC 225

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP+L+ G LS R+         V L  +  +    +   L W   +   +   P + 
Sbjct: 226 SRLSPHLAWGTLSMREV--------VQLSRRRGAAPVGFEARLHWHCHFIQKLESQPDLE 277

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +   P T  +  + D   L AW +G TG P +DA MR L   GW++ R+R +  S   
Sbjct: 278 F-RELHPLTAGLR-SSDPERLAAWAEGRTGLPFVDACMRALIATGWINFRMRAMLMSVAS 335

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
             L + WR    +     +D +   +    Q    +G   +   RI+NP  QG+  DP G
Sbjct: 336 YHLWLPWRESGLHLARLFVDYEPGIHWSQCQMQ--SGTTGINTIRIYNPIKQGQDHDPGG 393

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            FIR WLPEL  VP  ++H P +            L L+YPLPIV+  +A      + +A
Sbjct: 394 DFIRQWLPELAAVPAVHLHEPWTMAVITQQRVGCVLGLHYPLPIVEPNQAAREARVRIWA 453

Query: 477 AKKQ 480
            +++
Sbjct: 454 QRQE 457


>gi|227829309|ref|YP_002831088.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15]
 gi|284996667|ref|YP_003418434.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5]
 gi|227455756|gb|ACP34443.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.S.2.15]
 gi|284444562|gb|ADB86064.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus L.D.8.5]
          Length = 433

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 140/475 (29%), Positives = 216/475 (45%), Gaps = 49/475 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +      V  ++ N  Y      RD+ + K   
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCA 116

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F   +    ++  +++      +    
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     D            G +  + ++ +    +   Y +++D  A    + LSP
Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P 
Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 IEW  +  L QAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK L++
Sbjct: 265 KREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLII 324

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I+ 
Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKR 382

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           W+ EL +   + IH  + +  K+     YP PIVD +   +     Y   +K  +
Sbjct: 383 WVDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|229578080|ref|YP_002836478.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14]
 gi|228008794|gb|ACP44556.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.G.57.14]
          Length = 433

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 140/475 (29%), Positives = 217/475 (45%), Gaps = 49/475 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +      V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEEIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F   +    ++  +++      +    
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     D            G +  + ++ +    +   Y +++D  A    + LSP
Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P 
Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 IEW  +  L QAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK L++
Sbjct: 265 KREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLII 324

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I+ 
Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKR 382

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           W+ EL +   + IH  + +  K+     YP PIVD +   +     Y   +K  +
Sbjct: 383 WVDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|315126037|ref|YP_004068040.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
 gi|315014551|gb|ADT67889.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
          Length = 509

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 107/491 (21%), Positives = 199/491 (40%), Gaps = 36/491 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            + +++VW + DLR++D++ L  A  N     + ++   P        + R   F+Y S+
Sbjct: 2   RIKINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLIYNFEPLLLDDAHYNERHWRFVYQSI 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLE 124
             +   L++             +D    L+S   Q  +T LF +++  +N    RD  ++
Sbjct: 61  CDLNTQLARFNSRVYIFN----EDMQTLLESLHSQFEITNLFSHQEIGLNNTFERDIAIK 116

Query: 125 KRLQHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAI 182
              QH         + L  P G+++            +++ +   +   + + + P+   
Sbjct: 117 AWCQH------HHINWLESPTGAVIRGKRNRSNWNERWQQTMQAPIAIPNWKQIKPLTLT 170

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               P+ PS   +  ++           G + A  +++ F  E+   Y +    P++  T
Sbjct: 171 DYQTPILPSAYTQDNEH-------FQHGGPRLAREVMQSFFAERGKGYQKGISSPSLSRT 223

Query: 243 --SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LSPYL+ G +S RQ +    + +       K         +    ++ H M  + S
Sbjct: 224 HCSRLSPYLAWGNISLRQVYQMAIDAYHSTSADKKGWKRPLAAFVSRLHWHCHFMQKFES 283

Query: 301 VCMG--KPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            C    K   P      +  D+     ++ W QG TG PIIDA MR L   G+++ R+R 
Sbjct: 284 ECTMEFKALNPGYHAFPYRDDAQVTSDIERWAQGQTGIPIIDACMRCLKATGYINFRMRA 343

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +  SF+   L + W+       +  LD +   +    Q  AS     +   R +NP  Q 
Sbjct: 344 MLVSFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVT--GINTIRHYNPIKQS 401

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH 469
           +  DP G FI+ W PEL  +P +Y+H P              L  +YP P++D   A   
Sbjct: 402 EDQDPTGAFIKKWCPELEKLPIEYLHQPWEQTPMEALFNDFKLGEDYPEPMLDLTTASKE 461

Query: 470 TLNQYYAAKKQ 480
              + +  +++
Sbjct: 462 ARERLWQYRER 472


>gi|225429814|ref|XP_002280771.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 549

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 130/492 (26%), Positives = 214/492 (43%), Gaps = 50/492 (10%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57
                V +VW RNDLR+ DN+AL  A  +S A V+ V+   P  +            A +
Sbjct: 47  RNGSGVAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALR 105

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           + F+   L  ++++L  +G+              E L S         ++ +++    E+
Sbjct: 106 AQFLIECLADLKRNLMNRGLNLLIQHGKPE----EILPSLAKTFEAHTVYAHKETCSEEL 161

Query: 118 RRDKLLEKRLQHRVI-----------------CKSFDDSVLLPPGSILNHALQMYKVYTP 160
             ++L+   L+  V+                  +    S +     +      +  VYT 
Sbjct: 162 NVERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQ 221

Query: 161 FRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215
           FRK++     I+  ++      P P I   G V   +     +         F  GE  A
Sbjct: 222 FRKSVESKCTIRICIRTPTLLGPPPNIEDWGSVPSIDQLGLHEEKVSR-GMRFIGGEAAA 280

Query: 216 LHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
           L  + ++  +K     Y   R+ +     +++ SP+L+ G LSPR  +  +K    +   
Sbjct: 281 LSRVNEYFWKKDLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKRYEKER-- 338

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
           +     +  L ELIWR+++R L   Y +           E   W++D  + +AW+ G TG
Sbjct: 339 QANDSTYWVLFELIWRDYFRFLSVKYRNSLFHLGGPRKVEA-RWSQDQTMFEAWRDGCTG 397

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P+IDA M++L+  G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W
Sbjct: 398 YPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNW 457

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452
            + A  GND     R F+   Q K +DP+G ++  WLPEL  +P    + P         
Sbjct: 458 TYGAGVGNDPRE-DRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP--------- 507

Query: 453 SLNYPLPIVDHK 464
             +Y   IV  K
Sbjct: 508 GKSYINQIVPLK 519


>gi|77361123|ref|YP_340698.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876034|emb|CAI87256.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 503

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 105/489 (21%), Positives = 197/489 (40%), Gaps = 32/489 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M +++VW + DLR++D++ L  A  N     + ++   P        + R   F+Y S++
Sbjct: 1   MKINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLLYNFEPLMLEDTHYNERHWRFVYQSIV 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125
           ++   L++          +  D     L+S   Q  +  +F +++  +N    RDK ++ 
Sbjct: 60  ELNNQLTRFNACVYIFNLNMGD----LLESLKTQFEIVNIFSHQEIGLNNTFERDKAIKV 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             QH  I      +     G+++            +++ +   +   + +S+    +   
Sbjct: 116 WCQHNHINWQESQT-----GAVIRGKKNRNNWNERWQQTMQAPIAVPNWKSIKTITLNNY 170

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTS 243
                 +         Q  D     G   A  +L+ F  E+   Y +    P++     S
Sbjct: 171 QAPELPSAYT------QNHDSFQQGGPLQARTVLQSFFAERGKGYQKGISSPSLSQVHCS 224

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL+ G +S RQ +    +E+       +         +    ++ H M  + S C 
Sbjct: 225 RLSPYLAWGNISLRQVYQMAFDEYHSKHPDKRGWKRPLAAFVSRLHWHCHFMQKFESECS 284

Query: 304 GK--PFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +     P      +  D H    ++ W QG TG PIIDA MR L   G+++ R+R +  
Sbjct: 285 MEFLALNPGYHVFPYRDDEHVKSDIERWVQGQTGIPIIDACMRCLKATGYINFRMRAMLV 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF+   L + W+       +  LD +   +    Q  AS     +   R +NP  Q +  
Sbjct: 345 SFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVT--GINTIRHYNPIKQSEDQ 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLN 472
           DP G+FI+ W PEL  +P +Y+H P              L  +YP P++D   A      
Sbjct: 403 DPTGSFIKKWCPELEKLPIEYLHQPWQQTPMEALFNDFKLGEDYPEPMLDLTAASKAARE 462

Query: 473 QYYAAKKQS 481
           + +  ++++
Sbjct: 463 RLWQYRERA 471


>gi|114561960|ref|YP_749473.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB
           400]
 gi|114333253|gb|ABI70635.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina
           NCIMB 400]
          Length = 504

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 111/497 (22%), Positives = 204/497 (41%), Gaps = 32/497 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M  T   ++++VW + DLR++D++ L  A  N D   + ++   P        + R   F
Sbjct: 1   MPDTIKQAINIVWFKRDLRLSDHQPLVDAF-NHDLPCLLIYTFEPFMLADSHYNERHWRF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRR 119
           ++ SL  + + L    + F           I+ LD       +  ++ +++    N   R
Sbjct: 60  VWQSLQDMNQQL----LRFNGQVYMFSMPMIDLLDEISQTFEIKNIYSHQEIGLHNSFER 115

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           DK + +    + +  S+  S   P G+++            +++ +   +   + +   +
Sbjct: 116 DKTVARWCNQQPV--SWQQS---PTGAVVRGRKNRQAWDQHWQQVMNSPIAIPNWQQCQL 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             +      T  N     +  FQ        G + A  IL  F   +   Y      P++
Sbjct: 171 QKLDNYQEPTLDNAIMAHNDQFQI------GGPKAARTILSSFLTHRGKDYQRSISSPSL 224

Query: 240 QGT--SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
             T  S+LSPYL+ G +S +Q +      + ++    K+     L  +    ++ H M  
Sbjct: 225 SRTHCSRLSPYLAWGNISLKQVYQATLTRYNEVQTSNKAWRKPLLAMMSRLHWHCHFMQK 284

Query: 298 YPSVCMGK--PFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           + S C  +  P  P      +  D      +Q W  G TG PIIDA MR L   G+++ R
Sbjct: 285 FESQCSMEFTPVNPGYVDYPYRTDDKVQQDIQRWADGQTGIPIIDACMRCLKETGYINFR 344

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +R +  SF+   L + W+       +  LD +   +    Q  AS     +   R++NP 
Sbjct: 345 MRAMLVSFVTHHLNIAWQHASLPLANYFLDFEPGIHYPQLQMQASVT--GINTIRLYNPV 402

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKA 466
            Q +  DP+G FIR W PEL N+P +YIH P        +        +YP P++D  +A
Sbjct: 403 KQSQDQDPRGEFIRLWCPELTNLPNEYIHQPWQQPPMEAIFNDIILGRDYPEPMIDLTQA 462

Query: 467 CHHTLNQYYAAKKQSLL 483
                ++ ++ ++Q  +
Sbjct: 463 SQTARDRLWSYREQPQV 479


>gi|257053657|ref|YP_003131490.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
 gi|256692420|gb|ACV12757.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
          Length = 478

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 120/481 (24%), Positives = 190/481 (39%), Gaps = 37/481 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----------Q 57
             +VWLR DLR  DN     A   +  +V+ V+   P ++ Q                 +
Sbjct: 4   TAVVWLRRDLRTRDNA--TLAAACAADRVLPVYCFEPRRYGQRAFGGAASFEYDGVGAGR 61

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           + F   ++  ++  L + G                 L           L Y       E 
Sbjct: 62  AQFEREAVGDLRDRLREIGSDLFVRHGRPD----AVLPDLVEAVDADHLHYQTLPIPEER 117

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            R+  + + L   V  +      L     +     +M   +TP+R+++       +    
Sbjct: 118 TREHQVRRALPEAVTVERHWTHTLHHVEDLPTPYDEMPDTFTPWRQSVEAESRVREPIEA 177

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILRKFCKEKVY-- 228
           P           P  IP   D            +   F  GE      L ++  E     
Sbjct: 178 PAVPPVPADAPQPGPIPELADLGVVGDVPDDDRMPLDFEGGETPGQRRLEQYVWETDSLR 237

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y + R+ +     +S+ SP+ ++G LSPR  +  +KE   + +       +    EL W
Sbjct: 238 AYKQTRNGLVGRDYSSKFSPWQNVGCLSPRDVYQTVKEYERERV--SNDSTYWLNFELRW 295

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+F++   A Y         I     ++W +D    + W++G TG P +DAAMR+L   G
Sbjct: 296 RDFFQFQFAKYGGKFFTPGGIRERTDLDWRRDESDFRRWQEGRTGVPFVDAAMRELVATG 355

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           ++ NR R   ASFLV DL +DWR G  ++   LLD D ASN G W + A  GNDS     
Sbjct: 356 YVSNRARQNAASFLVHDLGIDWRWGGAHYEHHLLDYDPASNYGNWAYIAKVGNDSREGG- 414

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461
            F+   Q +R+DP G +I  W PEL+ +  +Y   P    ++        L  +YP P+V
Sbjct: 415 -FDVLSQAERYDPGGEYISRWCPELDGLIAEYAREPWRMDEEEQRERGLVLGEDYPEPMV 473

Query: 462 D 462
           D
Sbjct: 474 D 474


>gi|16330358|ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803]
 gi|1652848|dbj|BAA17766.1| DNA photolyase [Synechocystis sp. PCC 6803]
          Length = 453

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 124/450 (27%), Positives = 210/450 (46%), Gaps = 30/450 (6%)

Query: 41  FIATPEQWRQHG-----ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95
           +   P Q+ Q           +S+F+  S+  + +SL + G               + + 
Sbjct: 2   YCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPE----QVIP 57

Query: 96  SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQM 154
               Q     ++Y+R+    E+  ++ L K+L    +  K +  S L  P  +      +
Sbjct: 58  QIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDL 117

Query: 155 YKVYTPFRKALIQNLVQADL------RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
             ++T FRK + +  +          + LP P I+L     P       ++  +++   F
Sbjct: 118 PDLFTKFRKDIEKKKISIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINFDHRSV-LAF 176

Query: 209 PIGEQNALHILRKFCK--EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
             GE   L  L+ +    +++  Y E R+ +     +S+ SP+L++G LSPR  +  +K 
Sbjct: 177 QGGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKR 236

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
              + +          + EL+WR+F+R +   Y +    +  +   +   W +D    + 
Sbjct: 237 YEQERV--SNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGL-LNKNFPWQEDQVRFEL 293

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W+ G TG+P++DA MR+LN  G+M NR R   ASFL K+L +DWR G E+F S L+D D+
Sbjct: 294 WRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDV 353

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
            SN G W + A  GND+   FR FN   Q +++DPQGT++RHWLPEL N+P   IH P  
Sbjct: 354 CSNWGNWNYTAGIGNDAR-DFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWL 412

Query: 446 WLDKN------DLSLNYPLPIVDHKKACHH 469
                       L ++YP P V+  ++   
Sbjct: 413 LSATEQKQWGVQLGVDYPRPCVNFHQSVEA 442


>gi|297158620|gb|ADI08332.1| deoxyribodipyrimidine photo-lyase [Streptomyces bingchenggensis
           BCW-1]
          Length = 466

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 136/478 (28%), Positives = 211/478 (44%), Gaps = 31/478 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V +     DLR+ DN AL  A   +++ V+ +F+          +   ++ F+   L  +
Sbjct: 5   VSVALFTADLRVHDNPALDGALREAES-VVPLFVVDSGIRDADFVVPNRAVFLADCLADL 63

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L  +G      +     D ++       +     +           RR+  L   L 
Sbjct: 64  DAALRARGGRLVVRRG----DVVQETCRVAARVGAGAVHMAGGASGYAARREARLRVALA 119

Query: 129 --------HRVICKSFDDSVLLPPG-----SILNHALQMYKVYTPFRKALIQNLVQADLR 175
                   H          VL+P G     S  +     + V+TP+ +       +A L 
Sbjct: 120 RERRELRVHEGAVTVVAPGVLVPSGKSHSTSGGSQRKDHFAVFTPYYRRWRSEPWRAPLP 179

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           +  V  +                 P  A   +   GE  A   LR++    +  Y E++D
Sbjct: 180 APRVVRVPSIRSAALPTAASLA--PGAASLDLPAGGETAARRRLRRWAAGPLADYAERQD 237

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
             A   TS+LSPYL  G LSP +   R  +           GA +++ +L WR+F+  ++
Sbjct: 238 DLAGDATSRLSPYLHFGCLSPVEVARRALDA-------GGPGAEAFVRQLAWRDFHLQVL 290

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           A  P     + + P  ++  W +D+  + AW  G TG P++DAAMRQL   GWM  R R+
Sbjct: 291 AARPDAA-HRDYRPRHDR--WRQDADEVAAWCAGLTGCPVVDAAMRQLTREGWMPGRARL 347

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + ASFL K L +DWR G  +F++ L+DGD+A+N   WQWAA TG D+ P  RI NP IQ 
Sbjct: 348 LAASFLAKTLYIDWRTGARHFLALLVDGDIANNQLNWQWAAGTGTDTRP-GRILNPLIQA 406

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
            R DP+G ++R W+PEL  V    +H P      +  +L YP PIVD  +A      +
Sbjct: 407 LRHDPEGEYVRRWVPELAAVQGPAVHRPWQLPGPDRAALAYPDPIVDLAEAADRFRRR 464


>gi|323473750|gb|ADX84356.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus REY15A]
          Length = 433

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 141/475 (29%), Positives = 218/475 (45%), Gaps = 49/475 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +      V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F   +    ++  +++      +    
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     D            G +  + ++ +    +   Y +++D  A    + LSP
Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P 
Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 IEW  +  LLQAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK LL+
Sbjct: 265 KREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLLI 324

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +D +  +++ 
Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDQEAKYVKR 382

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           W+ EL +  ++ IH  + +  K     NYP PIVD +   +     Y   +K  +
Sbjct: 383 WVDELESYDSEIIHNAYKYTLK-----NYPKPIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|229583293|ref|YP_002841692.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51]
 gi|228014009|gb|ACP49770.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus Y.N.15.51]
          Length = 433

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 140/475 (29%), Positives = 218/475 (45%), Gaps = 49/475 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +      V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F   +    ++  +++      +    
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     D            G +  + ++ +    +   Y +++D  A    + LSP
Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P 
Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 IEW  +  L QAW +G TG+PIIDA MRQLN  G M NR+RM+TA FLVK L++
Sbjct: 265 KREYNCIEWENNERLFQAWLEGKTGYPIIDAGMRQLNRTGDMPNRVRMLTAFFLVKVLII 324

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +I+ 
Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQVTYDPEAKYIKR 382

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           W+ EL +   + IH  + +  K+     YP PIVD +   + +   Y   +K  +
Sbjct: 383 WVDELESYDAEIIHNAYKYTLKS-----YPKPIVDWRIRVNLSKRLYEVCRKSKI 432


>gi|254821492|ref|ZP_05226493.1| Phr protein [Mycobacterium intracellulare ATCC 13950]
          Length = 442

 Score =  310 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 140/472 (29%), Positives = 220/472 (46%), Gaps = 34/472 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L+W R DLR+ D+            +V+A F+  P    +     R+  F+  SL ++
Sbjct: 2   PALLWFRRDLRLRDHP--ALLAAAEAHEVLACFVLDPRL--ESSSGQRRLQFLGDSLRRL 57

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L  + +V +    +        +     +   T +  +  +     RRD+ +   L 
Sbjct: 58  RADLDGRLLVTRGRPDT-------QIPHIAKEIGATSVHISEDFAPFGTRRDERVRAALG 110

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V   +     L+ PG +       Y+V+TPF +   +   +A   S    A  L    
Sbjct: 111 A-VPLVATGSPYLVSPGRVTKPDGSPYQVFTPFLRQWHKVGWRAPATSGAASAHWLDPAR 169

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
                    + P   +      GE  A    + F    +  Y + R+ P ++GTS++S +
Sbjct: 170 LRVGHC---EIPDPGVPLDVAAGEAAARAQWKSFLDNGLRSYADDRNRPDLRGTSRMSAH 226

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L  G + PR           DL ++   GA ++L EL +R+FY  ++  +P+    + + 
Sbjct: 227 LKFGTVHPRTL-------AADLDLRG-GGAQAYLRELAFRDFYADVLHHWPASAW-RNWN 277

Query: 309 PWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
              + I  +   +      AWK G TGFP +DA MRQL   G+MHNR+RM  ASFLVKDL
Sbjct: 278 KDFDGIPTDSGAEAERRFAAWKAGETGFPFVDAGMRQLRETGFMHNRVRMSVASFLVKDL 337

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W+ G E+F+ QL+DGD+A+N  GWQW A  G D+ PYFR+F+PT QG++FDP G +I
Sbjct: 338 HLPWQWGAEWFLDQLVDGDMANNQHGWQWCAGCGTDAAPYFRVFDPTTQGEKFDPTGDYI 397

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           R W+PEL +    +       L +     NYP PIVDH       L +Y + 
Sbjct: 398 RRWVPELRSADDVH-------LRRGRRPDNYPQPIVDHAAERAEALRRYQSI 442


>gi|332532093|ref|ZP_08407976.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038434|gb|EGI74878.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 509

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 104/489 (21%), Positives = 201/489 (41%), Gaps = 34/489 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++VW + DLR++D++ L  A  N     + ++   P        + R   F+Y S+++
Sbjct: 4   KINIVWFKRDLRLSDHQPLKNAFSNG-LPTLLLYDFEPLLLEDAHYNERHWRFVYQSIVE 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126
           +   L++              +  + L+S  +Q  +  +F +++  +N    RDK+++  
Sbjct: 63  LNNQLARFNACVYIFNL----NMNDLLESLKMQFEIVNIFSHQEIGLNNTFERDKVIKAW 118

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-T 185
            QH  I      +     G+++            +++ +   +   + +S+    +    
Sbjct: 119 CQHNHINWQESQT-----GAVIRGKKNRNNWNERWQQTMQAPIAVPNWKSIKTITLNNYQ 173

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--S 243
            P  PS   +  D            G  +A  +++ F  E+   Y +    P++  T  S
Sbjct: 174 APELPSAYTQDHD-------SFQQGGPLHARTVMQSFFAERGKGYQKGISSPSLSQTHCS 226

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL+ G +S RQ +    +E+       +         +    ++ H M  + S C 
Sbjct: 227 RLSPYLAWGNISLRQVYQMAIDEYHSKHPDKRGWKRPLAAFVSRLHWHCHFMQKFESECS 286

Query: 304 GK--PFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +     P      +  D      ++ W QG TG PIIDA MR L   G+++ R+R +  
Sbjct: 287 MEFLALNPGYHVFPYRNDERVKNDIERWAQGQTGIPIIDACMRCLKATGYINFRMRAMLV 346

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF+   L + W+       +  LD +   +    Q  AS     +   R +NP  Q +  
Sbjct: 347 SFVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVT--GINTIRHYNPIKQSEDQ 404

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLN 472
           DP G+FI+ W PEL  +P +Y+H P              L  +YP P++D   A      
Sbjct: 405 DPTGSFIKKWCPELEKLPIEYLHQPWEQTPMEALFNDFKLGEDYPEPMLDLTAASKEARE 464

Query: 473 QYYAAKKQS 481
           + +  ++++
Sbjct: 465 RLWQYRERA 473


>gi|242096612|ref|XP_002438796.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
 gi|241917019|gb|EER90163.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
          Length = 577

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 133/493 (26%), Positives = 219/493 (44%), Gaps = 52/493 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISARQS 58
              V +VW RNDLR+ DN+AL  A   S+A V+ V+   P         +      A ++
Sbjct: 76  GAGVAVVWFRNDLRVLDNEALLRAWSASEA-VLPVYCVDPRVFAGSTHYFGFPKTGALRA 134

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L  +++ L +KG+              E L S         ++ +++    E+ 
Sbjct: 135 QFLIECLGDLKQILRKKGLDLLVRHGKPE----EILPSIAKAVSAHTIYAHKETCSEELL 190

Query: 119 RDKLLEKRLQHRVICKS---------------FDDSVLLPPGSILNHALQMYKVYTPFRK 163
            ++L+ K L+   I +                   + +     +      +  VYT FRK
Sbjct: 191 VERLVSKGLEQVQIAQGGASVPKKPLNPRLQLIWGATMYHIDDLPFPVSNLPDVYTQFRK 250

Query: 164 AL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQN 214
           A+     ++N  +      P+P+  +        IP                 F  GE  
Sbjct: 251 AVESKSSVRNCTKLPPSLGPLPSSSIDEIGGWGAIPTLESLGLSVTKSEKGMHFIGGENA 310

Query: 215 ALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
           AL  + ++   K+++  Y   R+ +     +++ SP+L+ G LSPR     +K      +
Sbjct: 311 ALGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRV 370

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
                  +  L ELIWR+++R L A Y +        P     +W++D  L ++W+ G T
Sbjct: 371 --ANDSTYWVLFELIWRDYFRFLSAKYGNTIFHLGG-PRKVVSKWSQDQALFESWRDGRT 427

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G+P+IDA MR+L+  G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D ASN G 
Sbjct: 428 GYPLIDANMRELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGN 487

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           W + A  GND     R F+   Q K +DP+G ++ +WLPEL ++  +  + P        
Sbjct: 488 WTYGAGVGNDPRE-DRYFSIPKQAKSYDPEGEYVAYWLPELRSLAKERRNFP-------- 538

Query: 452 LSLNYPLPIVDHK 464
              +Y   IV  K
Sbjct: 539 -GASYIRQIVQLK 550


>gi|315605497|ref|ZP_07880534.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315312764|gb|EFU60844.1| deoxyribodipyrimidine photolyase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 475

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 142/496 (28%), Positives = 219/496 (44%), Gaps = 54/496 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA----TPEQWRQHG---ISARQSHFI 61
             L+WLR+DLR+ D+ AL AAC  +   V+A++I     T E   +HG   + A    + 
Sbjct: 2   TTLIWLRDDLRLADHPALTAACTGAHGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWY 61

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL Q+   L+  GI   + +          +D+       T + + R+Y     R D 
Sbjct: 62  HRSLQQLAPRLADLGIPLIFARGDAARIMRRVVDTLQP----TFVHWTRRYAPAACRLDA 117

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV-- 179
            +++ L+ R    S   S+L  P  +   +   Y+V+TPF  A+    +   L       
Sbjct: 118 AIKQELKSRTEVHSHPGSLLAEPWLMRTASGSHYQVFTPFSHAVADLPLTPLLPEPSPVD 177

Query: 180 ----PAIRLTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEK 226
                A  L        +    D              +   +  GE  A   L       
Sbjct: 178 EPDGAATDLATLREDGVLHNLEDIGLLDDGPDWWEDTLAQHWEPGELAARQQLDA-IDGW 236

Query: 227 VYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           +  Y ++RD+P  +  TS++SP L  G LSPRQ     +               +W  +L
Sbjct: 237 LPGYAKRRDLPGEETSTSRISPRLRCGELSPRQALAAAR-----SSTAAGEDIAAWTRQL 291

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WREF  HL+     +    P  P  E+  ++ D HL++AW+QG TG  ++D  M QL  
Sbjct: 292 YWREFCWHLLHHREHL-EDTPMRPAFEEFPYHPDDHLVRAWRQGRTGIDLVDGGMWQLWQ 350

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GWMHNR+RM+ AS   K++L  W+ GE++F   L+D D A+N   WQW A +G D+ PY
Sbjct: 351 TGWMHNRVRMVAASLFTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGSGADAAPY 410

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           FRIFNP +Q  RFDP  ++++ W+PE    P                     +P+VD  +
Sbjct: 411 FRIFNPELQRTRFDPHSSYVKRWIPEGLARPV--------------------VPVVDLAE 450

Query: 466 ACHHTLNQYYAAKKQS 481
           +    L  Y   +  S
Sbjct: 451 SRREALAAYEQVRAAS 466


>gi|150026080|ref|YP_001296906.1| deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772621|emb|CAL44104.1| Deoxyribodipyrimidine photolyase PhrB2 [Flavobacterium
           psychrophilum JIP02/86]
          Length = 502

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 110/484 (22%), Positives = 203/484 (41%), Gaps = 32/484 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++VW + DLR TDN+AL+ A H+S   ++ +++  P          R   F+Y SLL +
Sbjct: 6   VNIVWFKRDLRFTDNEALFHA-HHSGLPLLLIYVFEPSVMNYDDSDVRHWRFVYESLLDM 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWL-DSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           Q  L          +   F +  + +         V  +F +++   N++  D+ +E + 
Sbjct: 65  QLKLD-----LVASKIYFFHNESKIIFSELIKIFNVQTIFSHQEIG-NKITFDRDIEMQA 118

Query: 128 ---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              ++ +I K F          ++            +   +  +    DL+ L +  +  
Sbjct: 119 FFNKNNIIWKEFQLH------GVIRKLKSRQNWDKKWEDVMRASPRIIDLKDLKIEILSD 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
           +            +      +     GE  A   L  F K++   Y +    P  + +G 
Sbjct: 173 SFYQEFKGEILNPEITTHNKN-FQQGGENFAWRYLDSFVKKRYVNYSKHISKPLLSRKGC 231

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL+ G +S R  +    + +     K K    ++++ L W   +        ++ 
Sbjct: 232 SRLSPYLTYGNISMRAIYQYTNQHYE--TSKNKRAILNFVSRLHWHCHFMQKFEDECTME 289

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                  +   I+  K+   ++AW++G TG PI+DA MR L T G+++ R+R +  SF  
Sbjct: 290 FENANRAYDVLIK-PKNETYIKAWQEGKTGVPIVDACMRCLVTTGYINFRMRAMVVSFFT 348

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L  DWR    +   Q LD +   +    Q    +G   +   RI+NP    +  DP+G
Sbjct: 349 FNLWQDWRELH-FLARQFLDYEPGIHYPQIQMQ--SGTTGINTIRIYNPIKNSEEHDPEG 405

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYA 476
            FI+ WLPEL  +P   +H P    D         +  +YP PIV+  +   +  +  ++
Sbjct: 406 IFIKQWLPELAEIPLSLLHEPWKMNDMEQQFYNCKIGEDYPTPIVNIDQTRKYASDIVWS 465

Query: 477 AKKQ 480
            +K+
Sbjct: 466 FRKK 469


>gi|301609141|ref|XP_002934138.1| PREDICTED: cryptochrome-2 [Xenopus (Silurana) tropicalis]
          Length = 531

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 182/437 (41%), Gaps = 23/437 (5%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F+  SL  +  SL +        +        +       + + +   +    E   
Sbjct: 29  RGRFLLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKECKFSTPTFEYDSEPFG 84

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLR 175
             RD ++ K  +   +    ++S  L     L+  +++     P      Q ++ + +L 
Sbjct: 85  KERDAVIMKLAKEAGVEVIVENSHTLY---DLDRIIELNGHSPPLTYKRFQAIISRMELP 141

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQR 234
             P P++        +++     +  +   P ++P GE  AL  L +  + K +    +R
Sbjct: 142 RRPAPSVTRQQMEGCNSLCIASGFHSEIKGPSIWPGGETEALARLDRHLERKAWVANYER 201

Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
                       + LSPYL  G LS R  + RLKE +  +  K      S   +L+WREF
Sbjct: 202 PRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLKELYKKVK-KNSPPPLSLYGQLLWREF 260

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H
Sbjct: 261 FYTAATNNPKFDQMEG-NPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEGWIH 319

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL   W  G + F   LLD D + N G W W  S       +F  +
Sbjct: 320 HLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCY 378

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463
            P   G+R DP G ++R +LP L   P++YI+ P S  +      K  + ++YP PIV+H
Sbjct: 379 CPVGFGRRTDPSGDYVRRYLPVLKAFPSRYIYEPWSAPESVQKEAKCIIGIDYPKPIVNH 438

Query: 464 KKACHHTLNQYYAAKKQ 480
            +A    + +     +Q
Sbjct: 439 AEASRMNIERMKQTYQQ 455


>gi|290975950|ref|XP_002670704.1| predicted protein [Naegleria gruberi]
 gi|284084266|gb|EFC37960.1| predicted protein [Naegleria gruberi]
          Length = 553

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 130/535 (24%), Positives = 226/535 (42%), Gaps = 80/535 (14%)

Query: 1   MKATT-AMSVHLVWLRNDLRITDNKALYAACHNSDAK--------VIAVFIATPEQWRQH 51
           M  T   +   L+W RNDLR+ DN++L      +++         V+ ++   P  +   
Sbjct: 1   MSTTNNTLKKALLWFRNDLRLHDNESLIKTLRLANSSNNNTSKVGVLPLYCFDPRHFGFS 60

Query: 52  GIS------ARQSHFIYASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT 104
            I       A ++ F+  S+  ++K+L ++ G+              E +   C Q  + 
Sbjct: 61  RIGKFRKANANRTRFLTESVDNLRKNLMNEWGLKLMIQ----IGHPEEIIPHLCSQYEIE 116

Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164
           ++F +++    E      +E+ L+ ++         ++    +      +  V+T FR+ 
Sbjct: 117 QVFADKEVTSEET----SIEQVLEKQINVNYSYGFSMVHVEDLPFKIENLPHVFTDFRRK 172

Query: 165 LIQ------------------------NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200
           +                          NL+Q +      P +++ G           +  
Sbjct: 173 VENPKLIVRPLLQLSPNEKKLISSRVVNLIQDENALGKTPDLKVLGYTDEEISEMMENLK 232

Query: 201 FQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPR 257
                  F  GE  AL  L  +   ++++  Y E R+ +     +S+LSP+LS+G +SPR
Sbjct: 233 DPRSVLHFKGGEDEALARLNDYLWTQDRLKTYKETRNGLVGEAYSSKLSPWLSLGCISPR 292

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG------------- 304
           + ++ +K    + +       +  + EL+WR+++R     + +                 
Sbjct: 293 KIYHEVKRYEKERV--ENDSTYWLIFELLWRDYFRFFAEKFGNHIFMLKGVTRASSKRKG 350

Query: 305 -------KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                         ++  W +D  L + W  G TG P +DA MR+L   GWM NR R   
Sbjct: 351 LIGDSSSNKVESKYDETRWKQDLKLFKLWADGKTGLPFVDANMRELKISGWMSNRGRQNV 410

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG-NDSVPYFRIFNPTIQGK 416
           ASFL KDL +DWR+G EYF S LLD  + SN G W +AA  G  D     R FN   QG 
Sbjct: 411 ASFLSKDLNLDWRLGAEYFESLLLDHSVTSNWGNWLYAAGVGDVDPRGEARYFNVVKQGF 470

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKK 465
            +D  G F++ W+PEL+ VP + IHAP+   +      K  + ++YP  +V+ K 
Sbjct: 471 DYDFNGEFVKLWIPELDQVPQRCIHAPYLMSESEQTNAKCTIGVDYPKSLVNVKA 525


>gi|260906395|ref|ZP_05914717.1| putative deoxyribodipyrimidine photolyase [Brevibacterium linens
           BL2]
          Length = 494

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 144/509 (28%), Positives = 209/509 (41%), Gaps = 62/509 (12%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TPEQWRQHGISARQSH 59
            TT   + LVW R+DLR++D+ AL AA   +D +VIAV+I      +      +      
Sbjct: 2   GTTDEDLTLVWFRDDLRVSDHAALTAA--RADGRVIAVWIREARDSQGLGPRPLGGASRW 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           + + SL  + + LS  GI   +       ++   +        V  + ++R+Y       
Sbjct: 60  WAHESLAILHQELSDLGIPLLF----AAGEAAAIIPQLTGSLGVGAVRWSRRYAPASRAL 115

Query: 120 DKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  ++  L  +     S   S+L+ P +        YKV+TPF KA+    V   L +  
Sbjct: 116 DSQIKTVLHEQGLAVHSHTGSLLVEPWTAAPQGGDHYKVFTPFWKAVSGREVGDVLPTPE 175

Query: 179 VPAIRLTGPVTPSNIPRF-------------------------FDYPFQAIDPMFPIGEQ 213
             +      V  +                                +    I   +  G +
Sbjct: 176 PQSPIDRSLVESARDCTAVTDLDGLGLLDGTGTGSGHFAAVHGPRWWQDTIACHWLPGTR 235

Query: 214 NALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
            A   L       +  Y   RD+P+    TS+LSP L  G LSPRQ  +  +        
Sbjct: 236 AAADQLDD-LAVGIDGYSSTRDVPSDANSTSRLSPRLRFGELSPRQLLHAAQT----TRS 290

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
                  +W+ +L WREF  HL   YP +    P         +  D   L  W+ G TG
Sbjct: 291 VTPDDRAAWVRQLYWREFSWHLTYHYPDIDYT-PIRREFRNFPYEDDDEALAHWRSGATG 349

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P+IDA M QL   GWMHNR+RM+TASFL K+LL  W  GE++F   L+D D A+N   W
Sbjct: 350 YPLIDAGMAQLWETGWMHNRVRMVTASFLTKNLLQHWWCGEQWFWDALVDADEANNPVSW 409

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452
           QW A +G D+ PYFR+FNP  Q +RFDP G ++  WLP                      
Sbjct: 410 QWVAGSGADAAPYFRVFNPERQRERFDPDGAYVDDWLPYPPAAAPAP------------- 456

Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
                  IVD   +    L+ Y   K  S
Sbjct: 457 -------IVDLADSRQAALSAYDRMKNMS 478


>gi|188536103|ref|NP_001120929.1| cryptochrome-2 isoform 2 [Homo sapiens]
          Length = 532

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 111/452 (24%), Positives = 176/452 (38%), Gaps = 30/452 (6%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
                 + F+  SL  +  SL +        +        +       +  VT+L +   
Sbjct: 4   PPGRTHTWFLLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYD 59

Query: 112 YEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNL 169
            E     RD  + K  +   V   + +   L     I+    Q     Y  F+  + +  
Sbjct: 60  SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRME 119

Query: 170 VQADLRSL-------PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHIL 219
           +      L          A           +P   +  F  + + P  +  GE  AL  L
Sbjct: 120 LPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 179

Query: 220 RKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
            K  + K +    +R            + LSPYL  G LS R  + RL + +  +  +  
Sbjct: 180 DKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNS 238

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           +   S   +L+WREF+       P     +   P   +I W+++   L  W +G TGFP 
Sbjct: 239 TPPLSLFGQLLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPW 297

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W
Sbjct: 298 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 357

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
             S       +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      
Sbjct: 358 -LSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAA 416

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           K  + ++YP PIV+H +     + +     +Q
Sbjct: 417 KCIIGVDYPRPIVNHAETSRLNIERMKQIYQQ 448


>gi|85704991|ref|ZP_01036091.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
 gi|85670313|gb|EAQ25174.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
          Length = 528

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 110/477 (23%), Positives = 184/477 (38%), Gaps = 25/477 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W + DLR+ D+ AL  A       +I ++I  PE W +   S RQ  FI   L  +
Sbjct: 36  PVILWFKRDLRVQDHPALSHAARLG--PIIPLYIVEPEAWAEPDASERQYAFICECLESL 93

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127
           +  L+  G+           D++  L++    Q V  L  + +   +    RD+ + +  
Sbjct: 94  RSDLAALGLSLVLR----VGDAVTVLEALRADQGVAHLVSHEETGNLWSYARDRKVAEWA 149

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + + +           P S +   L     +   R  +++  V   ++     A+     
Sbjct: 150 RGQGV------RWHEMPQSGVVRRLSSRDAWQGARDRVMRAPVLGAVQGARGAAVASDDL 203

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
            +P  +      P +        G    +  L  F   +   Y      P    +  S++
Sbjct: 204 PSPEALGLMEACPLR-----QKGGRGAGVRALTSFVSTRGESYQRAMSSPLHGARACSRI 258

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L+ G LS R+                     S+   L WR+ +   +   P +   +
Sbjct: 259 SPHLAFGTLSLREAVQAGAAAPTGRGPDWARSMRSFQARLAWRDHFMQKLEDEPEIER-R 317

Query: 306 PFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              P  E +     D+  L AW +G TG P +DA MR L   GW++ R+R +  +     
Sbjct: 318 CLHPAYEGLRPRVADAVRLAAWSKGETGLPFVDACMRSLRATGWLNFRMRSMLMAVASYH 377

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR           D +   +    Q    +G   +   RI+NP  QG   DP G F
Sbjct: 378 LWLDWRSTGPVLARAFTDYEPGIHWPQVQMQ--SGTTGMNTIRIYNPVKQGLDQDPSGEF 435

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            R WLPEL +VP  Y+  P +W +    L   YP PIVD  +A        +A ++ 
Sbjct: 436 TRRWLPELAHVPDAYLQRPWAWSEAEALLGRGYPAPIVDPVEAARVAREAVWACRRA 492


>gi|88807683|ref|ZP_01123195.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
 gi|88788897|gb|EAR20052.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 7805]
          Length = 493

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 118/475 (24%), Positives = 193/475 (40%), Gaps = 34/475 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVW + DLR+ D++ L  A       V+ ++I  PE W Q   SARQ  F   SL  +Q
Sbjct: 6   QLVWFKRDLRLVDHQPLARALARG--PVLPLYIVEPELWSQPDCSARQWAFCRESLQDLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQ 128
           ++ ++ G            D+++ L+    Q  ++ L+ + +        RD+ +    +
Sbjct: 64  EAFAEVGQPLIIRSG----DAVDVLERARRQLGISALWSHEETGNAWTFARDRRVAAWAR 119

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            R I         LP   ++            + + + + +  A     P+  I      
Sbjct: 120 ERGIPWHE-----LPQFGVVRRLQTRRGWARRWEERMGEAITPAPTGLTPLSGIAPGDLP 174

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246
           T   +    D            G +  L  L  F   +V  Y      P  A +G S+LS
Sbjct: 175 TNDALALQAD----PCPYRQRGGRRLGLQELNDFLAHRVQGYCRSISSPNLAFKGCSRLS 230

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
            Y++ G LS R+   R +E           G  S+ + L W   +   +   P +   + 
Sbjct: 231 AYITWGCLSMREVLQRSREFQ-------GRGVSSFSSRLHWHCHFIQKLEDQPPIEW-ED 282

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F P+   I  + D     AW +G TG P +DA MR L   GW++ R+R +  SF   +L 
Sbjct: 283 FHPFMRGIR-SLDDARFAAWAEGQTGVPFVDACMRALRAHGWINFRMRAMLMSFASYNLW 341

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + WR    +   Q +D +   +    Q    +G+ S+   RI+NP  QG   DP G FIR
Sbjct: 342 LPWRDTGLHLARQFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGHDHDPDGAFIR 399

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            W PEL +VP  ++H P S L          +PIVD   +      + +  ++ +
Sbjct: 400 RWCPELEDVPAVHLHEPWSLLGAPRS-----MPIVDCAISAREAKERIFEIRRSA 449


>gi|78486463|ref|YP_392388.1| deoxyribodipyrimidine photolyase [Thiomicrospira crunogena XCL-2]
 gi|78364749|gb|ABB42714.1| Deoxyribodipyrimidine photo-lyase type I [Thiomicrospira crunogena
           XCL-2]
          Length = 479

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 155/486 (31%), Positives = 234/486 (48%), Gaps = 32/486 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVWL+ +LRI  + AL AA   SD  ++A F   PEQ     I A  + ++  SL Q+Q
Sbjct: 3   TLVWLQRELRINHHPALEAAMAASDDIIVAYF-HDPEQT----IGAANTVWLANSLQQLQ 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQ 128
           +    +       +        + L+      ++ ++FY  Q     +  + + L    +
Sbjct: 58  QDFKTRHGRLWCLEG----IFEQQLEQVIQTHQIEQVFYTFQLGHPFKAMQQQALNVCQR 113

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-- 186
            +V  ++F+    L    +LN + Q YKV+TPF   L + L + +  S P+  +  T   
Sbjct: 114 CQVPLRAFETENWLHYNQLLNQSGQPYKVFTPFYNTLSRKLSELEPFSDPIDTLEKTART 173

Query: 187 -------PVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                     P ++ +    P+ + I   + +GE  A      F  E +  Y + RD PA
Sbjct: 174 VCQSGQDQNLPQSLNQILARPWARKIMQHWQVGEHKAWSKFETFITEGLANYEQDRDFPA 233

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           I GTSQLSP+L  G L  R     L     +  I  ++    WL +L WREF R ++  +
Sbjct: 234 IDGTSQLSPHLHFGELHSRAIVFELLSLETEPTIANQA-IRVWLRQLAWREFARAILWHF 292

Query: 299 PSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           P      PF    E        + ++ S   QAW +G TG PIIDA M+QL   GWMHNR
Sbjct: 293 PHTETH-PFQAKFETFYRPLAEDDSESSKNYQAWCEGRTGVPIIDAGMKQLWETGWMHNR 351

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           +RM+ AS+L K+  +DWR G ++F   L+D D A+N  GWQW A  G D+ PY+R+FNP 
Sbjct: 352 VRMLVASWLTKNADIDWRAGAQWFNDTLVDADPANNTLGWQWVAGCGVDAAPYYRLFNPV 411

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLN 472
            Q ++FD  G ++R WLPEL     ++IHAP               PI+D  ++  H L+
Sbjct: 412 RQSEKFDANGQYLRQWLPELKTYSNKHIHAPWLIAPNEKHFC----PIIDLTESRQHHLD 467

Query: 473 QYYAAK 478
           +    K
Sbjct: 468 KVATLK 473


>gi|332836252|ref|XP_003313049.1| PREDICTED: cryptochrome-2 isoform 2 [Pan troglodytes]
          Length = 532

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 110/452 (24%), Positives = 176/452 (38%), Gaps = 30/452 (6%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
                 + F+  SL  +  SL +        +        +       +  VT+L +   
Sbjct: 4   PPGRTHTWFLLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYD 59

Query: 112 YEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNL 169
            E     RD  + K  +   V   + +   L     I+    Q     Y  F+  + +  
Sbjct: 60  SEPFGKERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRME 119

Query: 170 VQADL-------RSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHIL 219
           +           +     A           +P   +  F  + + P  +  GE  AL  L
Sbjct: 120 LPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARL 179

Query: 220 RKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
            K  + K +    +R            + LSPYL  G LS R  + RL + +  +  +  
Sbjct: 180 DKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNS 238

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           +   S   +L+WREF+       P     +   P   +I W+++   L  W +G TGFP 
Sbjct: 239 TPPLSLFGQLLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPW 297

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W
Sbjct: 298 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW 357

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
             S       +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      
Sbjct: 358 -LSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAA 416

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           K  + ++YP PIV+H +     + +     +Q
Sbjct: 417 KCIIGVDYPRPIVNHAETSRLNIERMKQIYQQ 448


>gi|283476381|emb|CAY26038.1| chryptochrome 1 [Acyrthosiphon pisum]
          Length = 553

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 122/508 (24%), Positives = 203/508 (39%), Gaps = 42/508 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V + W RN LR+ DN AL  A HN+  K+I +FI     +           F+  SL+
Sbjct: 1   MTVAVHWFRNGLRLHDNPALIEA-HNNAEKLITLFIFDETTFNPKWYGYNPMRFLLESLI 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+  G      Q     + +        +  +  + Y +        RD+ ++  
Sbjct: 60  DLNNNLALVGGRLYILQG----NPVNIFKMIKEKIGLHFITYEQDCAHLGRTRDEKVKSF 115

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQA------------ 172
                + C       L  P SI+          +  F+    Q                 
Sbjct: 116 CDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVDWLSVI 175

Query: 173 --DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYY 229
             +L +      +     TP     + + P        +  GE  AL  L++  + +   
Sbjct: 176 FEELPASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYGGETRALEQLKERLEYEKEA 235

Query: 230 YVEQRDIPAIQGT------SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           +V    +P           S LS  L  G LS R+ +  L + F++         +S  +
Sbjct: 236 FVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFINKFEGDLLPMYSVTS 295

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-----KDSHLLQAWKQGYTGFPIIDA 338
           +LIWR+++  +     +    +   P    I WN     ++  +L+ WK G TG+P IDA
Sbjct: 296 QLIWRDYFYTMSIDNKNFGQIED-NPACISIPWNDIKIPENKKMLECWKTGKTGYPFIDA 354

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GW+H+ +R   ASFL + DL + W  G  +FM  LLD D +  +G W W +S
Sbjct: 355 GMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFMKYLLDADFSVCSGNWIWVSS 414

Query: 398 TGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------N 450
           +  +  +       P   G R DP G +I+ ++PEL N+P Q+++ P    +        
Sbjct: 415 STFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMPAQFLYEPWKCPESVQKQVGC 474

Query: 451 DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +  +YP  IVDH  A      +  A +
Sbjct: 475 IIGKDYPNCIVDHTIASKGNRKKMLALR 502


>gi|110667265|ref|YP_657076.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
 gi|109625012|emb|CAJ51427.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
          Length = 463

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 138/479 (28%), Positives = 214/479 (44%), Gaps = 30/479 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W R D R+ DN  L AA       V+ V++   + +    I  RQ  F   ++ ++
Sbjct: 1   MRLFWHRRDPRLRDNAGLAAAARADSESVLPVYVYDSDLFGA--IGERQQAFWMHAVREL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++  ++            D     + +   +  +  +  N+ Y      R + +   L 
Sbjct: 59  KEAYRERESDLIVRAGDPGD----IIPALAEEYDIDGVHCNQHYRPGRQSRRERVASELD 114

Query: 129 HRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTG 186
              I      D VL+ PG +       Y  ++ F         ++   S P    + +T 
Sbjct: 115 KSGIAFDVRTDHVLVDPGRLDAS----YPNHSQFHNDWEDVPKRSAYDSPPAETLVDITD 170

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----- 241
             T        D P        P G + A   L +FC   +Y Y + RD  A        
Sbjct: 171 SKTVPVPTVEIDLP--------PSGYEAARDRLDRFCDRGIYDYNDTRDDLAQAAEKPTT 222

Query: 242 -TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S++SPYLS G++  R+ W+     +  +    +  A  +  EL WRE   HL+ + P 
Sbjct: 223 AVSRMSPYLSGGMIGIREVWDAASSVYEAVHGNERRNADKYRYELSWREQNYHLLYYNPD 282

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           + +   +     +I+W  D    ++W  G TG+P++DA MRQLN  G++HNR R + ASF
Sbjct: 283 LAVSN-YKSIPNEIQWRDDDEAFKSWALGQTGYPLVDAGMRQLNREGYIHNRPRQVVASF 341

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LLVDWR G  YF  QL+D D ASN+G WQW ASTG DSV   RIF+P  Q  ++D 
Sbjct: 342 LTKHLLVDWRRGARYFTKQLIDHDYASNHGSWQWIASTGTDSV-DVRIFDPVSQLSKYDD 400

Query: 421 QGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
              F+R ++PEL++ PT+ I      S  D+   +  YP PIV   +        +  A
Sbjct: 401 GANFVREYVPELSDTPTEKIIEWPTLSPGDRAQFAPEYPDPIVGRNEGYERAQQTFEKA 459


>gi|326433957|gb|EGD79527.1| cryptochrome DASH [Salpingoeca sp. ATCC 50818]
          Length = 552

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 131/493 (26%), Positives = 218/493 (44%), Gaps = 41/493 (8%)

Query: 1   MKATTAMSV--HLVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ------- 50
           M ++++ +V   +VW R +DLRI D++ L  A   S   V+ V+   P Q          
Sbjct: 1   MSSSSSKAVRPAVVWFRGSDLRIHDHEPLLEAAKASKGHVVPVYCFDPRQVGPAAKTRCG 60

Query: 51  --HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
                  +++ FI   +  ++++L + G            +  E +         T++F 
Sbjct: 61  QFPKCGWQRTRFIVECVEDLRRNLQRLGSNLVVR----VGEPEEVIPDIVSITGATEVFG 116

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL--QMYKVYTPFRKALI 166
            ++    E   +  L KRL   +  + +    L     +        +  V++ FRKA  
Sbjct: 117 QKEVCSEETGVEHRLAKRLSVPLTLR-WGAITLCHRDDLPYERSCSDLPGVFSQFRKAAE 175

Query: 167 QNLVQADLRSLPVPAIRLTGPVT------PSNIPRFFDYPFQAIDP---MFPIGEQNALH 217
             +     R  P     L  P+       P       + P +A +     F  GE  A  
Sbjct: 176 ACVPIRPPRPPPPSLQPLPQPIAGDPGHVPPVTQLSPNAPAKADERGVLTFVGGETVART 235

Query: 218 ILRKFCKE--KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
            ++ +  +   +  Y + R+ +     +S+ SP+L+ G +S R   + +K    + +   
Sbjct: 236 RVKHYLWDTDCIATYKDTRNGLVGADYSSKFSPWLAHGCVSARWIHSEVKRYERERV--K 293

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
            +  +  + EL+WR+++R +   + +    K      + I W      L AW++G TGFP
Sbjct: 294 NNSTYWLVFELLWRDYFRFVALQHGTAIF-KEGGVQRKGIAWRHSPLDLSAWQEGRTGFP 352

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
            +DA MR+L   G+M NR R   ASFL KDLL+DWR+G E+F S L+D D  +N G W +
Sbjct: 353 FVDANMRELAATGFMSNRGRQNVASFLTKDLLIDWRLGAEWFESLLIDHDPCANYGNWNY 412

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKN 450
           AA  GND     R FN   Q K +DP   ++  W+PEL ++P  + H    APH  L+  
Sbjct: 413 AAGIGNDPRQ-GRHFNVIRQAKTYDPAAEYVHLWVPELKHLPAPFAHTPYQAPHGELEAA 471

Query: 451 D--LSLNYPLPIV 461
              L  +YP PIV
Sbjct: 472 GVALEKSYPRPIV 484


>gi|157104635|ref|XP_001648498.1| DNA photolyase [Aedes aegypti]
 gi|122106526|sp|Q17DK5|CRY1_AEDAE RecName: Full=Cryptochrome-1
 gi|108880271|gb|EAT44496.1| DNA photolyase [Aedes aegypti]
          Length = 545

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 117/518 (22%), Positives = 205/518 (39%), Gaps = 47/518 (9%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHF 60
           M+V+ ++W R+ LR+ DN +L  A  N        ++  +FI   E      +   +  F
Sbjct: 1   MTVNNILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  + + L + G      +     +++  +     +  + KL + +  E     RD
Sbjct: 61  LLESLADLDRQLREIGGQLYVFKG----NAVNVMRRLFEELNIRKLCFEQDCEPIWKARD 116

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             ++   +   V C       L  P  I   +       Y  F   +          + P
Sbjct: 117 DAIQNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTVDIIGKPPRPVAAP 176

Query: 179 VPAIRLTGPV----------------TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
                  G +                +P +   +++         +  GE  AL  L   
Sbjct: 177 SFEFVEFGSIPSILAQEVKLQQVRNLSPEDFGIYYEGNPDISHQQWMGGETKALECLGHR 236

Query: 223 CKEKVYYYVEQRDIPAIQGT------SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK- 275
            K++   ++    +P           + +S  L  G LS R  +  + + +  +    + 
Sbjct: 237 LKQEEEAFLGGYFLPTQAKPEFLVPPTSMSAALRFGCLSVRMFYWCVHDLYEKVQANNQY 296

Query: 276 --SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTG 332
              G      +LIWRE++  +    P     +   P    I W       L  WK+G TG
Sbjct: 297 RNPGGQHITGQLIWREYFYTMSVHNPHYAEMEA-NPICLNIPWYEPKDDSLDRWKEGRTG 355

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGG 391
           FP+IDAAMRQL   GW+H+ LR ITA+FL +  L + W  G ++F+  LLD D +   G 
Sbjct: 356 FPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLKYLLDADWSVCAGN 415

Query: 392 WQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK- 449
           W W +S+  +  +      +P    +R DP+G ++R +LPEL N+PT Y+H P       
Sbjct: 416 WMWVSSSAFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELKNLPTLYVHEPWKAPLDV 475

Query: 450 -----NDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
                  +  +YP P++D   A     N   + +++ +
Sbjct: 476 QKECGCIVGRDYPAPMIDLAAASRANANTMNSIRQKLM 513


>gi|226508658|ref|NP_001146707.1| hypothetical protein LOC100280309 [Zea mays]
 gi|219888435|gb|ACL54592.1| unknown [Zea mays]
          Length = 550

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 213/472 (45%), Gaps = 43/472 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISARQS 58
            + V +VW RNDLR+ DN+AL  A   S+A V+ V+   P         +      A ++
Sbjct: 49  GVGVAVVWFRNDLRVIDNEALLRAWAASEA-VLPVYCVDPRVFAGSTHYFGFPKKGALRA 107

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L  +++SL +KG+              E L S         ++ +++    E+ 
Sbjct: 108 QFLIECLGDLKQSLRKKGLDLLVRHGKPE----EILPSIAKAVSAHTIYAHKETCSEELL 163

Query: 119 RDKLLEKRLQHRVICKS---------------FDDSVLLPPGSILNHALQMYKVYTPFRK 163
            ++L+ K L+   I +                   + +     +      +  VYT FRK
Sbjct: 164 VERLVSKGLEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFPVSSLPDVYTQFRK 223

Query: 164 ALIQNLVQADLRSLP-----VPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQN 214
           A+       +   LP      P+  +        +P                 F  GE  
Sbjct: 224 AVESKCSVRNCAKLPTSLGPPPSSSIDEIGGWGTVPTLESLGPSVTKSEKGMHFIGGESA 283

Query: 215 ALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
           AL  + ++   K+++  Y   R+ +     +++ SP+L+ G LSPR     +K      +
Sbjct: 284 ALGRVHEYFWKKDQLKDYKVTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRYEKQRV 343

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
                  +  L ELIWR+++R L A Y +        P     +W++D  L ++W+ G T
Sbjct: 344 --ANDSTYWVLFELIWRDYFRFLSAKYGNAIFHLGG-PRKVVSKWSQDQALFESWRDGRT 400

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G+P+IDA MR+L+  G+M NR R I  SFLV+D+ VDWR+G E+F + LLD D ASN G 
Sbjct: 401 GYPLIDANMRELSATGYMSNRGRQIVCSFLVRDMGVDWRMGAEWFETCLLDYDPASNYGN 460

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           W + A  GND     R F+   Q K +DP+G ++ +WLPEL ++  +  + P
Sbjct: 461 WTYGAGVGNDPRE-DRYFSIPKQAKSYDPEGEYVAYWLPELRSLAKERRNFP 511


>gi|156383457|ref|XP_001632850.1| predicted protein [Nematostella vectensis]
 gi|156219912|gb|EDO40787.1| predicted protein [Nematostella vectensis]
          Length = 492

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 115/481 (23%), Positives = 191/481 (39%), Gaps = 32/481 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             + W R DLR+ DN +L A+  N       +++   E  R   ISA + +F+   L  +
Sbjct: 3   TSVHWFRKDLRLHDNPSLLASLDNCSTF-FPIYVLDMESARASKISANRWNFLCECLEAL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L   G      +      +I+ L     +  V +L + R+ E    +RD +++   +
Sbjct: 62  DRQLRVLGSRLFVIRG----RAIDVLPRLFHEWSVNRLTFERESEPAGRQRDTVIQMLAE 117

Query: 129 H-RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +  V     +  +L     +L  +  ++   +        + L         V       
Sbjct: 118 NANVQLLQHNAHLLYDTDEVLETNDGKLPMTFDE-MAKTAEQLGPPCPPCQTVDKTVFGA 176

Query: 187 PVTPSNI--------PRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQ 233
            +TP  +        P+  D+  + +        +  GE  A+  L    ++K +     
Sbjct: 177 CITPVGLDHAEKYGVPQLSDFGGKELGRATAKLFWKGGELEAMRRLNLALQKKKFIKPPL 236

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                +     LSPY+  G LSP    +RL  E+   +        +    L+WREF+  
Sbjct: 237 SADTLLASDRALSPYMRFGCLSPCYILDRLTTEYQRTM--GSKPPETLYTNLLWREFFFA 294

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
             +  P         P   +I W +    L  WKQG TGFP IDA MRQL   GW+H+  
Sbjct: 295 TASTNPDHHRMMG-NPLALQIPWEQHPEALSLWKQGKTGFPWIDAIMRQLREEGWIHHLA 353

Query: 354 RMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
           R     FL +  L V W  G + F    LD + + N G W W  S  +        + P 
Sbjct: 354 RQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNAGNWLW-LSCSSYVHGAVPWYCPV 412

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKA 466
             GK+ DP G +IR ++PEL  +PT+++H P              +  +YP P+V+H + 
Sbjct: 413 EVGKQVDPTGEYIRTFVPELRRLPTKFLHEPWKAPSSVQREAGCIVGKDYPQPMVNHLER 472

Query: 467 C 467
            
Sbjct: 473 R 473


>gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis]
 gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis]
          Length = 576

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 131/478 (27%), Positives = 221/478 (46%), Gaps = 31/478 (6%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG------ISARQ 57
                + +VW RNDLRI DN++L  A  +SD+ ++ V+   P  +            A +
Sbjct: 79  RKGKGICIVWFRNDLRILDNESLLQAWLSSDS-LLPVYCVDPRLFHTTHHFAFPKTGALR 137

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           + F+   L  ++ +L ++G+          D     L S         ++  ++    E+
Sbjct: 138 AQFLIECLADLKNNLMKRGLNLFIRHGKPED----ILPSLARAFSAHTVYAQKETCSEEL 193

Query: 118 RRDKLLEKRLQ------------HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL 165
             ++L+ K LQ             +   +    S +     +  +A  +  VYT F K +
Sbjct: 194 IVERLVSKALQRVNLPPSPDKFTSQPKLQLVWGSTMYHIDDLPFNANNIPDVYTQFPKCV 253

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCK 224
           I+  ++  +   P P +   G V   +         + I  M F  GE  AL  + ++  
Sbjct: 254 IRGCLKIPVTLAPSPPVDDWGCVPSLDQLGLQPQKARFIKGMRFLGGETAALSRVYEYFW 313

Query: 225 EKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           +K     Y E R+ +     +++ SP+L+ G LSPR  +  +K    +   +     +  
Sbjct: 314 KKDLLKIYKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEDVKRYENER--QANDSTYWV 371

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           L ELIWR+++R L   Y +       +   E+  W++D  L ++WK G TG+P+IDA M+
Sbjct: 372 LFELIWRDYFRFLSVKYGNSLFHLGGVRKVER-SWSQDQKLFESWKDGCTGYPLIDANMK 430

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L+T G+M NR R I  SFLV+D+ VDWR+G E+F + LLD D  SN G W + A  GND
Sbjct: 431 ELSTTGFMSNRGRQIVCSFLVRDMGVDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGND 490

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
                R F+   Q + +DP+G ++ +WLP+L  +     H P     +  + L Y  P
Sbjct: 491 PRE-DRYFSIPKQAQIYDPEGEYVAYWLPQLQKLEKDRRHFPGKSYIEQIVPLKYGNP 547


>gi|254227310|ref|ZP_04920742.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|262396423|ref|YP_003288276.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio sp. Ex25]
 gi|151939922|gb|EDN58748.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|262340017|gb|ACY53811.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio sp. Ex25]
          Length = 493

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 115/487 (23%), Positives = 199/487 (40%), Gaps = 32/487 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++++VWL+ DLR+TD++ L  A  +S    + ++I  P        S R   F++ SL  
Sbjct: 3   TINVVWLKRDLRLTDHQPLTQAL-SSKHPTVLLYIVEPLLLNNPHYSERHWRFVWQSLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           + ++L   G          F D++    S  +Q ++  +F +++  +N    RDK +   
Sbjct: 62  MNETLKAYGHRITVL----FGDALACFQSIQMQYQINAVFSHQEIGLNCTFERDKQIADW 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  + I            G+++  A         +   +  ++   DL++     +    
Sbjct: 118 LHEQNITW-----FEFEHGAVIRGAKDRQGWDKHWDLVMRSSISPLDLQT---NLLHSLD 169

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
             +                 M   G Q A   L  F   +   Y      P  +    ++
Sbjct: 170 AESLGCAFSPPSSWLSKCKGMQTGGSQLAWKTLEDFFNRRGRDYYRSISSPTASRTACTR 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMAFYPS 300
           LSPYL+ G +S R+ +  L + +  +  +      S    W    I +    + M FY  
Sbjct: 230 LSPYLAWGNISLREVYQYLLKHWQVVGFRRSLIALSSRLHWHCHFIQKFESEYDMEFY-- 287

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
            C+ + +    ++     D   L AWK GYTG P+IDA MR L+  G+++ R+R +  SF
Sbjct: 288 -CVNRAYESLIKQSS-TFDEEKLAAWKSGYTGIPLIDACMRCLHQTGYINFRMRAMLVSF 345

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L   + +DWR G  +     LD +   +   +Q     G       RI+NP  Q +  DP
Sbjct: 346 LTHHMNMDWRTGVTHLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPVKQAQEHDP 403

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQY 474
            G FI  W+PEL  VPT  +  P +      +  +      Y  PIVD   A      + 
Sbjct: 404 DGAFIYKWVPELQMVPTPLLFEPWTMTQMETVMYHLKPDSRYLAPIVDLNSAAKDARERL 463

Query: 475 YAAKKQS 481
           +A +K++
Sbjct: 464 WAWRKRA 470


>gi|163756026|ref|ZP_02163142.1| putative deoxyribodipyrimidine photolyase [Kordia algicida OT-1]
 gi|161323900|gb|EDP95233.1| putative deoxyribodipyrimidine photolyase [Kordia algicida OT-1]
          Length = 495

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 106/495 (21%), Positives = 191/495 (38%), Gaps = 32/495 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M     + +++V  + DLR+ DN+A++ A       ++ +F+           S R  +F
Sbjct: 1   MNTQNKIEINVVLFKRDLRLQDNEAIHNALSTGKKTLL-LFVFEDILLNDPHYSERHWNF 59

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-R 119
           I  SL+ +  SL          +     +    L       ++T LF +++  I     R
Sbjct: 60  IKESLIDLNNSLIAYNSEILIVRS----NINRTLQIIQETYKITHLFSHQETGIKVTYDR 115

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           DK+L++ L + +I    + +       +             +     +N +   L S   
Sbjct: 116 DKMLKRFLANNMITWVENIN-----NGVFRGLQDRTDWIEKW-----ENFMNQPLLSFLP 165

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              +L       ++  FF  P    +P       G   AL     F +++   Y      
Sbjct: 166 KKDQLFTKKEVQHLASFFHVPSLETNPDTLFQKGGTTMALKYKNTFFRDRGKNYNHHISK 225

Query: 237 P--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           P  A +  S+LSPYL+ G LS R+            +   +    S+ + L W+  +   
Sbjct: 226 PLLARRSCSRLSPYLAWGNLSVREVIQETTRCIEQNIYPKQ--MESFGSRLRWQAHFIQK 283

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                             K++       ++AWK G TG+P++DA MR L   G+++ R+R
Sbjct: 284 FE-MEDEMEFVSINKGYRKLKKRVSERYIEAWKNGMTGYPLVDACMRCLKETGYLNFRMR 342

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF   +L   W+          LD +   +    Q     G   +   R++NPT  
Sbjct: 343 ALVVSFFTHNLWQPWQKATVILSQYFLDFEPGIHFPQIQMQ--AGETGINMLRMYNPTKN 400

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACH 468
           G   DP+G FI+ W+PEL  + T ++H P              L  +YP PIV+ ++   
Sbjct: 401 GIAHDPEGIFIKKWVPELAELDTAFVHEPSKMTPMEQQMANFILGKDYPKPIVNLQETRK 460

Query: 469 HTLNQYYAAKKQSLL 483
           H  +  +  K ++ +
Sbjct: 461 HASDILWNMKDENTV 475


>gi|254480682|ref|ZP_05093929.1| FAD binding domain of DNA photolyase protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039265|gb|EEB79925.1| FAD binding domain of DNA photolyase protein [marine gamma
           proteobacterium HTCC2148]
          Length = 495

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 107/482 (22%), Positives = 187/482 (38%), Gaps = 20/482 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MSV +VWL+ DLR+ D++ L  A  +S   V   +   P        S R   F+  SL 
Sbjct: 1   MSVSVVWLKRDLRLNDHQPLLRAL-SSGLPVFIFYCFEPMLLNDPRYSERHWRFVSQSLQ 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125
            + + L Q        Q     D++        +  ++ ++ + +  ++    RD+ +  
Sbjct: 60  DMNRQLRQNRFRVLVFQS----DALPLFKLIHAESPISAVYSHEETGVDSTFGRDRSIAS 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L +  I          P   +             + + +     Q    ++  P     
Sbjct: 116 WLNNEGIAWHES-----PTNGVQRGRTDRKGWNRRWSEVMKMPQDQPVWDAVCAPPPLAG 170

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTS 243
           G +  + +    +   + +  +   GE  A  +L  F  E+  +Y      P       S
Sbjct: 171 GALGEALLRSPPEQWLRPVQDLQQGGETAATQVLDSFLTERGAHYERHISKPDKSQLHCS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSP+L+ G +S RQ    L+        +    A  + + L W   +        S+  
Sbjct: 231 RLSPHLAWGNISIRQVSQALEARRPYAGWERSMNA--FESRLHWHCHFIQKFEMECSMEW 288

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +        +E + D     AW++G TG+P+IDAAMR L   G+++ R R +  SF   
Sbjct: 289 -RDLNRGYLDVERSYDPAAQLAWREGRTGYPLIDAAMRCLQATGYVNFRCRAMLVSFFCH 347

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L   W     +  S  LD +   +    Q     G   +   RI+NP  Q    DP+G 
Sbjct: 348 LLWQPWHDAAVHLASLFLDFEPGIHYPQLQMQ--AGVTGINTVRIYNPIKQAIDHDPKGH 405

Query: 424 FIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           FIR W+PEL  +P   IH P   + +++  LS +YP PI+D   +        +  +  +
Sbjct: 406 FIRQWVPELRTMPEHLIHQPWNANPMERMLLSCDYPEPIIDCTSSYRRAREILWDLQHSN 465

Query: 482 LL 483
            +
Sbjct: 466 TV 467


>gi|296171175|ref|ZP_06852623.1| deoxyribodipyrimidine photolyase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894311|gb|EFG74066.1| deoxyribodipyrimidine photolyase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 443

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 135/458 (29%), Positives = 213/458 (46%), Gaps = 34/458 (7%)

Query: 23  NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82
           + AL AA  N   +V+A F+  P          R+  ++  +L +++  L  + +V    
Sbjct: 17  HPALVAAAQN--EQVLACFVLDPRLEAS--SGERRLQYLGDALRRLRSDLDGRLLV---- 68

Query: 83  QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL 142
                    E +     +   + +  +  +     RRD  +   L   V   +     L+
Sbjct: 69  ---TRGLPHERIPRIVKEIGASSVHVSTDFAPFGRRRDDRVRAALGS-VPLVATGSPYLV 124

Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ 202
            PG +       Y+V+TPF +   +   ++  +S    A  +             D P  
Sbjct: 125 SPGRVTKQDGTPYQVFTPFLRKWREVGWRSPAKSGAESAHWIDPDQVAIPQC---DIPDP 181

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
                   GE+ AL     F  + +  Y   RD P ++ TS++S +L  G + PR     
Sbjct: 182 GATLDLAAGERAALFEWEAFVNDGLERYAADRDRPDLEATSRMSAHLKFGSIHPRTMVAD 241

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           L           + GA ++L EL +R+FY  ++  +P+    + +    + I  +  +  
Sbjct: 242 L--------DLREPGAQAYLRELAFRDFYADVLHHWPASAW-RNWNHQFDGIRTDTGAEA 292

Query: 323 ---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
               ++WK G TGFP++DA MRQL   G++HNR+RMI ASFLVKDL + W+ G E+F+ Q
Sbjct: 293 KRRFESWKAGETGFPLVDAGMRQLRETGFVHNRVRMIVASFLVKDLHLPWQWGAEWFLDQ 352

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           L+DGD+A+N  GWQW A  G D+ PYFR+FNPT Q  +FDP G +IR W+PEL +V   +
Sbjct: 353 LVDGDMANNQHGWQWCAGCGTDAAPYFRVFNPTSQAAKFDPSGDYIRRWVPELRSVDDAH 412

Query: 440 IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
                  L K +    YP PIVDH       L +Y + 
Sbjct: 413 -------LRKGERPAGYPAPIVDHGAERAEALRRYQSI 443


>gi|254875029|ref|ZP_05247739.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254841028|gb|EET19464.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
           subsp. tularensis MA00-2987]
          Length = 355

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 130/360 (36%), Positives = 193/360 (53%), Gaps = 16/360 (4%)

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTG 186
           QH++   SF+ S+L+ P          YKVYTPF K LI+        + P  + +R   
Sbjct: 3   QHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYLRKLN 62

Query: 187 PVTPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                +  +  +  + +Q I   + IGE  +  IL +F   KV  Y   RD  +   TS+
Sbjct: 63  NSENLDSLKLIEPKHSWQNIIKQWQIGESASHQILEEFLDNKVKEYKTARDFMSTDSTSK 122

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G +SP Q +N ++      L    +    ++ EL+WR+F  + + +YP +   
Sbjct: 123 LSPYLHFGEISPNQIFNAVQ-----SLDYIGNNEEHFIKELVWRDFSYYQIYYYPEL-HN 176

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           K      +  +W+ D  LL+ W++G TG PI+DA MR+L   G+MHNR+RMI ASFL+K+
Sbjct: 177 KNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVRMIVASFLIKN 236

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
            L+ W+ GE++F   L D D ASNN  WQW A  G D+ PYFRIFNP +Q ++F+    +
Sbjct: 237 CLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFEAY-EY 295

Query: 425 IRHWLPELNNVPTQYIHAPHS----WLDKNDLSL--NYPLPIVDHKKACHHTLNQYYAAK 478
           IR ++PEL  +P + I  P       L +  ++L  NYP PIVD KK+    L  +   K
Sbjct: 296 IRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDRALQLHNQIK 355


>gi|113953044|ref|YP_731210.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           CC9311]
 gi|113880395|gb|ABI45353.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           CC9311]
          Length = 504

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 118/484 (24%), Positives = 196/484 (40%), Gaps = 35/484 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LVW + DLR+ D+K L  A       V+ +++  PE W+Q   S RQ  F   SLL
Sbjct: 1   MALQLVWFKRDLRVKDHKPLQQALLRG--PVLPLYVVEPELWQQQDASERQWLFCRESLL 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125
            ++ +L+  G            D +E  +    Q  +  L+ + +       +RD+ +  
Sbjct: 59  DLRLALAALGQPLLVRSG----DVVEVFERAHRQFGLEALWSHEETGNGWTYQRDQRVAL 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +   I         +P   ++       +    +   + + +  + L  LP       
Sbjct: 115 WCRQHGIAWKE-----IPQFGVIRRLRSRTRWAKRWEAQMAEPITPSPL-GLPSIEGIDA 168

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
           G +     P     P          G   AL  L  F + +   Y      P  A  G S
Sbjct: 169 GVIPDCPHPTLASDPCPHRQS---GGRSMALLELDDFLEHRAPGYARSISSPNTAFTGCS 225

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL+ G LS R+     +            G  S+ + L W   +   +   PS+  
Sbjct: 226 RLSAYLTWGCLSMREVIQTSRGF-------SGRGISSFESRLHWHCHFIQKLEAQPSIEF 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P+   +    D  LL  W +G TG P +DA MR L   GW++ R+R +  SF   
Sbjct: 279 -EDFHPFMRGLRCTNDQRLLA-WAEGRTGVPFVDACMRALRAHGWINFRMRAMLMSFASY 336

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L + WR    +   Q +D +   +    Q    +G+ ++   R++NP  QG+  D  G 
Sbjct: 337 HLWLPWRDSGLHLARQFVDYEPGIHWSQCQMQ--SGSTAINTVRVYNPIKQGQDHDLNGE 394

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FIR W+PEL+ V   Y+H P              L ++YPLP+V+   A      + +A 
Sbjct: 395 FIRTWVPELHLVSNVYVHEPWKLSTAAQRQAGLQLGVDYPLPMVEPALAAREAKQRIWAI 454

Query: 478 KKQS 481
           +++S
Sbjct: 455 RERS 458


>gi|283806550|ref|NP_001164532.1| chryptochrome 1 [Acyrthosiphon pisum]
          Length = 553

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 122/508 (24%), Positives = 203/508 (39%), Gaps = 42/508 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V + W RN LR+ DN AL  A HN+  K+I +FI     +           F+  SL+
Sbjct: 1   MTVAVHWFRNGLRLHDNPALIEA-HNNAEKLITLFIFDETTFNPKWYGYNPMRFLLXSLI 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+  G      Q     + +        +  +  + Y +        RD+ ++  
Sbjct: 60  DLNNNLALVGGRLYILQG----NPVNIFKMIKEKIGLHFITYEQDCAHLGRTRDEKVKSF 115

Query: 127 LQHR-VICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQA------------ 172
                + C       L  P SI+          +  F+    Q                 
Sbjct: 116 CDENDIKCIETVSHTLWNPKSIIEKNGGVPPFTFKQFQNTAKQIGHPPSPVGNVDWLSVI 175

Query: 173 --DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYY 229
             +L +      +     TP     + + P        +  GE  AL  L++  + +   
Sbjct: 176 FEELPASIQDEFKNLHNPTPETFGIYPEVPENLTSTYRWYGGETRALEQLKERLEYEKEA 235

Query: 230 YVEQRDIPAIQGT------SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
           +V    +P           S LS  L  G LS R+ +  L + F++         +S  +
Sbjct: 236 FVNGFYLPNQVNPDLLSPPSSLSAALRYGCLSIRKFYWELTKLFINKFEGDLLPMYSVTS 295

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-----KDSHLLQAWKQGYTGFPIIDA 338
           +LIWR+++  +     +    +   P    I WN     ++  +L+ WK G TG+P IDA
Sbjct: 296 QLIWRDYFYTMSIDNKNFGQIED-NPACISIPWNDIKIPENKKMLECWKTGKTGYPFIDA 354

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            MRQL   GW+H+ +R   ASFL + DL + W  G  +FM  LLD D +  +G W W +S
Sbjct: 355 GMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFMKYLLDADFSVCSGNWIWVSS 414

Query: 398 TGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------N 450
           +  +  +       P   G R DP G +I+ ++PEL N+P Q+++ P    +        
Sbjct: 415 STFEQLLDCPLCVCPVSYGLRLDPSGEYIKRYVPELKNMPAQFLYEPWKCPESVQKQVGC 474

Query: 451 DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            +  +YP  IVDH  A      +  A +
Sbjct: 475 IIGKDYPNCIVDHTIASKGNRKKMLALR 502


>gi|75322263|sp|Q651U1|CRYD_ORYSJ RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|52075904|dbj|BAD45850.1| putative cryptochrome dash [Oryza sativa Japonica Group]
 gi|52077386|dbj|BAD46426.1| putative cryptochrome dash [Oryza sativa Japonica Group]
          Length = 582

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 221/488 (45%), Gaps = 43/488 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53
           M+ +    V +VW RNDLR+ DN+A+  A   SDA V+ V+   P         +     
Sbjct: 77  MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPRISAGSTHYFGFPKT 135

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A ++ F+   L  ++++L+++G+          D     L S         ++ +++  
Sbjct: 136 GALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVYAHKETC 191

Query: 114 INEVRRDKLLEKRLQHRVI---------------CKSFDDSVLLPPGSILNHALQMYKVY 158
             E+  + L+ K L+  VI                +    + L     +      +  VY
Sbjct: 192 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVY 251

Query: 159 TPFRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFP 209
           T FRKA+     ++N  +      P P   L        +P                 F 
Sbjct: 252 TQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMHFV 311

Query: 210 IGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
            GE  AL  + ++   K+++  Y E R+ +     +++ SP+L+ G LSPR     +K  
Sbjct: 312 GGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRY 371

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
               +       +  L ELIWR+++R + A Y +        P   + +W++D  L ++W
Sbjct: 372 EKQRI--ANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGG-PRNVESKWSQDQALFESW 428

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           + G TG+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D A
Sbjct: 429 RDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPA 488

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SN G W + A  GND     R F+   Q K +DP G ++ +WLPEL ++  +  + P + 
Sbjct: 489 SNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFPGAS 547

Query: 447 LDKNDLSL 454
             K  + L
Sbjct: 548 YIKQVVPL 555


>gi|326500588|dbj|BAK06380.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 592

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/478 (26%), Positives = 215/478 (44%), Gaps = 41/478 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-------EQWRQHGISARQSHFI 61
           V +VW R+DLR+ DN+AL  A   S A V+ V+   P        ++      A ++ F+
Sbjct: 97  VSVVWFRSDLRVLDNEALARAWAASGA-VLPVYCVDPRVLAGATHRFGFPKTGALRAQFL 155

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  ++++L ++G+          D     L           ++ +++    E+  + 
Sbjct: 156 IECLGDLKQNLQKRGLDLLVRHGKPED----ILPEIAKAVSAHTVYAHKETCSEELLVEH 211

Query: 122 LLEKRLQHRVI-------------CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL--- 165
           L+ + L+  +I              +    + +     +      +  VYT FRKA+   
Sbjct: 212 LVRRGLEKVIIPQGGASNKSLSPKLQLIWGATMYHIDDLPFPVSNLPDVYTQFRKAVESK 271

Query: 166 --IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFPIGEQNALHIL 219
             +++  +      P P+  L       +IP                 F  GE  AL  +
Sbjct: 272 SSVRSCSKLPPSLGPAPSSGLDEIGGWGSIPTLESLGLSVTKSEKGMRFVGGESAALGRV 331

Query: 220 RKFCK--EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
            ++    +++  Y E R+ +     +++ SP+L+ G LSPR     ++      +     
Sbjct: 332 HEYFWKNDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYVCEEVRRYEKQRV--AND 389

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
             +  L ELIWR+++R L   Y +        P     +W++D  L ++WK G TG+P+I
Sbjct: 390 STYWVLFELIWRDYFRFLSEKYGNSIFHLGG-PRKVASKWSQDQALFESWKDGRTGYPLI 448

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D ASN G W + A
Sbjct: 449 DANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGNWTYGA 508

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
             GND     R F+   Q K +DP G ++ +WLPEL ++  +  + P +   K  + L
Sbjct: 509 GVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSLAKERRNFPGASYIKQVVPL 565


>gi|322368590|ref|ZP_08043158.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
           DX253]
 gi|320551874|gb|EFW93520.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
           DX253]
          Length = 520

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 127/523 (24%), Positives = 208/523 (39%), Gaps = 80/523 (15%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----------GISA 55
           M   LVW R DLR+ DN+AL  A      ++  V+   P ++                 +
Sbjct: 1   MKTALVWFRTDLRVRDNRALAVASEA--ERLRCVYCFDPREFGSREYGGKDSFRYEKTGS 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++ F+  S+  ++ SL ++G               E + S         + ++      
Sbjct: 59  HRTRFLRESVEALRISLRERGNELVVRHGRPE----EVVPSLAADIDADLVCFHALPTPE 114

Query: 116 EVRRDKLLEKRLQH-----RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL- 169
           E   ++ + +RL           +S     L  P  +     ++   +T FR+ + ++  
Sbjct: 115 ERAVERAVTERLADPETDVDADVESIWGHTLYHPDDVPVPVAEIDDTFTTFRQTVERSDA 174

Query: 170 -----VQADLRSLPVPAI-----------RLTGPVTPSNIPRFFDYPFQAIDPM------ 207
                V       PVP                  + P  IP F D   +           
Sbjct: 175 DVRPTVDTPTTLPPVPEEVTEAGKREGEGEDGDEIDPGTIPSFADLGVEPPTRDERRVLD 234

Query: 208 FPIGEQNALHILRKFCK--EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           F  GE   L  L ++    +++  Y E R+ +     +S+LSP+L+ G LSPR  +  ++
Sbjct: 235 FEGGEPAGLERLERYVWTRDRLREYKETRNGLLGSDYSSKLSPWLNAGCLSPRTVFETVQ 294

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD----- 319
               + +       +  + EL+WR+F++   A + S    +  I     I+W        
Sbjct: 295 RYERERV--ENESTYWLVFELLWRDFFQFQFAKHGSQPFKRRGI-RRRTIDWRNGEGDGD 351

Query: 320 ----------------SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                               + WK+G TG P +DA MR+LN  G+M NR R   AS L  
Sbjct: 352 SGHDGGDEGSGDDGDGECEFERWKRGETGIPFVDANMRELNETGYMSNRGRQNVASVLAN 411

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR G  YF ++L+D D ASN G W + A  GNDS    R F+   Q + +DP   
Sbjct: 412 DLRIDWRKGAAYFETKLVDYDPASNYGNWAYVAGVGNDSRN--RSFDVLWQAEHYDPDAA 469

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460
           ++++WLPEL +VP +  H P     +        L   YP P+
Sbjct: 470 YVKYWLPELRDVPDEKAHEPWRLTAEERDRYGVTLGEEYPEPL 512


>gi|94501552|ref|ZP_01308070.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
 gi|94426370|gb|EAT11360.1| putative deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
          Length = 485

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 109/481 (22%), Positives = 202/481 (41%), Gaps = 32/481 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW + DLR+ D+ AL+ A        + ++I  P          R   F+Y SL  +
Sbjct: 1   MNVVWFKRDLRLHDHDALFKAISLGK-PCLLLYILEPSLIEDTHYDDRHWRFVYESLQDL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
            K LS  G      +     ++++ L +   +  +  +F +++  I     RD+ +E   
Sbjct: 60  NKQLSPYGHRLTVIKG----EALDVLQAIHQRHEIHTIFSHQEIGIARTFSRDRKIEYWC 115

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           ++  I          P G+++            +   + +++        P+   +L   
Sbjct: 116 KNNSIVWQQS-----PHGAVVRGLQHRLYWQDHWYNYMARSI-------PPIELNKLKSE 163

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244
            +  +    FD  ++  +P F   GE +A+  L  F  ++  +Y      P+      S+
Sbjct: 164 QSCLHDVDAFDDIYKQTNPHFQYGGESSAMVTLEDFLTDRHLHYRGSISSPSRSRHYCSR 223

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G LS R C+ + +  F     K K    ++ + L W   +         +   
Sbjct: 224 LSPYLAWGNLSLRYCYQQTQLAFAQ--SKGKQHLNAFSSRLHWHCHFIQKFESESRMEFE 281

Query: 305 KPFIPWTEKIEWN---KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                + +   ++        L  W+QG TG+P++DA +R L T G+++ R+R +  SF 
Sbjct: 282 AVNRGYLD-FPYDIGDSAHEKLAIWQQGKTGYPLVDACIRCLQTTGYLNFRMRAMLVSFA 340

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              L + W+   EY     LD D   +    Q  A          RI+NP  Q +  DP+
Sbjct: 341 CHYLNLHWKSVAEYLAKLFLDFDPGIHYSQIQMQAGIT--GTNTIRIYNPVKQSQEQDPE 398

Query: 422 GTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           G FIR W PEL+++    IH+P     L+K   +L+YP P+V+          + ++ + 
Sbjct: 399 GEFIRLWCPELSSLSNDVIHSPWLLGPLEKQMFALDYPEPMVN-ADCIQINRERLWSWRS 457

Query: 480 Q 480
           +
Sbjct: 458 R 458


>gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera]
          Length = 584

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 128/485 (26%), Positives = 207/485 (42%), Gaps = 57/485 (11%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57
                V +VW RNDLR+ DN+AL  A  +S A V+ V+   P  +            A +
Sbjct: 103 RNGSGVAIVWFRNDLRVLDNEALVKAWASSQA-VLPVYCVDPRLFGTTHYFGFPKTGALR 161

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           + F+   L  ++++L  +G+              E L S         ++ +++    E+
Sbjct: 162 AQFLIECLADLKRNLMNRGLNLLIQHGKPE----EILPSLAKTFEAHTVYAHKETCSEEL 217

Query: 118 RRDKLLEKRLQHRVI-----------------CKSFDDSVLLPPGSILNHALQMYKVYTP 160
             ++L+   L+  V+                  +    S +     +      +  VYT 
Sbjct: 218 NVERLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQ 277

Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
           FRK++            P     L GP          D+   +    F  GE  AL    
Sbjct: 278 FRKSVESKCTIRICIRTPT----LLGPPP-----NIEDWGSVSRGMRFIGGEAAALSR-- 326

Query: 221 KFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
               + +  Y   R+ +     +++ SP+L+ G LSPR  +  +K    +   +     +
Sbjct: 327 ----DLLKVYKATRNGMLGADYSTKFSPWLASGSLSPRFIYQEVKRYEKER--QANDSTY 380

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
             L ELIWR+++R L   Y +           E   W++D  + +AW+ G TG+P+IDA 
Sbjct: 381 WVLFELIWRDYFRFLSVKYRNSLFHLGGPRKVEA-RWSQDQTMFEAWRDGCTGYPLIDAN 439

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           M++L+  G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  G
Sbjct: 440 MKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVG 499

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
           ND     R F+   Q K +DP+G ++  WLPEL  +P    + P           +Y   
Sbjct: 500 NDPRE-DRYFSIPKQAKTYDPEGEYVAFWLPELQALPNDKRNFP---------GKSYINQ 549

Query: 460 IVDHK 464
           IV  K
Sbjct: 550 IVPLK 554


>gi|297812689|ref|XP_002874228.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297320065|gb|EFH50487.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 566

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 210/462 (45%), Gaps = 25/462 (5%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SA 55
                  + ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A
Sbjct: 77  TKRNGKGITILWFRNDLRVLDNDALYKAWSSSDT-LLPVYCLDPRLFHTTHFFNFPKTGA 135

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  F+   L+ ++K+L ++G+              E L S         +F +++    
Sbjct: 136 LRGGFLMECLVDLRKNLMKRGLNLLIRSGKPE----EILPSLAKDFGAHTVFAHKETCSE 191

Query: 116 EVRRDKLLEKRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
           E+  ++L+ + L+   +    +    S +     +      +  VYT FRK++       
Sbjct: 192 ELHVERLVNQGLKGVGNGTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIR 251

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHI-LRKFCK-EK 226
               +P+    +       ++P       +  +      F  GE   +      F K + 
Sbjct: 252 SSTRIPLSLGPIPSVDDWGDVPTLEQLGIEPQEVTRGMRFVGGESAGVGRVFEYFWKKDL 311

Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           +  Y + R+ +     +++ SP+L+ G +SPR  +  ++    + +    +  +  L EL
Sbjct: 312 LKVYKDTRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV--ANNSTYWVLFEL 369

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           IWR+++R L     +        P   + +W++D  L ++W+ G TG+P+IDA M++L T
Sbjct: 370 IWRDYFRFLSIKCGNSLFHLGG-PRNVQGKWSQDQKLFESWRDGKTGYPLIDANMKELYT 428

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  GND    
Sbjct: 429 TGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE- 487

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
            R F+   Q + +DP+G ++  WL +L  +P +  H P   +
Sbjct: 488 DRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM 529


>gi|87123904|ref|ZP_01079754.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
 gi|86168473|gb|EAQ69730.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RS9917]
          Length = 504

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 122/482 (25%), Positives = 201/482 (41%), Gaps = 35/482 (7%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A     + LVW + DLR  D++ L  A       V+ ++I  P+ W Q   SARQ  F  
Sbjct: 2   AVADQPLQLVWFKRDLRSVDHRPLALALERG--PVLPLYIVEPQFWLQPDASARQWAFCR 59

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDK 121
            +L  +Q+ LS  G            D++E L+   L+  V  L+ + +        RD+
Sbjct: 60  EALEALQERLSALGQPLVVR----VGDAVEVLERARLRLGVAALWSHEETGNAFTYARDR 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++   +   I          P   ++    +     T +++ +   L    L   P+PA
Sbjct: 116 RVKAWARSHGIPWREC-----PQFGVIRGLRRREGWATRWQERMATPLTPEPLALPPLPA 170

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239
           I+  G  + S++    D            G   A  +L+ F + +V  Y      P  A 
Sbjct: 171 IQPGGLPSASDLGLTAD----PCPCRQRGGRPQAETVLQDFLQRRVQRYCGSISSPLTAF 226

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            G S+LSPYL+ G LS R+                  G  ++ + L W   +   +   P
Sbjct: 227 DGCSRLSPYLTWGCLSLREVVQASASLTC-------RGVRNFRSRLHWHCHFIQKLESEP 279

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           ++   + F P+   I    D+   QAW +G TG P +DA MR L   GW++ R+R +  S
Sbjct: 280 AI-EHRDFHPFMRDIR-VWDAERYQAWAEGRTGLPFVDACMRALIAHGWINFRMRAMLMS 337

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
                L + WR    +     +D +   +    Q    +G+ S+   RI+NP  QG   D
Sbjct: 338 VATYHLWLPWRDTGLHLARLFVDYEPGIHWSQCQMQ--SGSTSINTIRIYNPIKQGLDHD 395

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P+G FIR W PEL + P  ++H P           ++P PIVD  +A     ++ +A ++
Sbjct: 396 PKGVFIRRWCPELAHRPDVWLHEPWR------GGGDHPAPIVDPDQAAREARDRIWAIRR 449

Query: 480 QS 481
            +
Sbjct: 450 AA 451


>gi|149376017|ref|ZP_01893783.1| deoxyribodipyrimidine photolyase family protein [Marinobacter
           algicola DG893]
 gi|149359654|gb|EDM48112.1| deoxyribodipyrimidine photolyase family protein [Marinobacter
           algicola DG893]
          Length = 507

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 105/473 (22%), Positives = 184/473 (38%), Gaps = 25/473 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW + DLR  D++ L AA +  +  VI +++   + W+    S RQ  FI   LL +
Sbjct: 2   TTVVWFKRDLRTRDHEPLIAAVNLGE-PVIPIYVVEDDYWQLPDTSERQWAFIRDCLLDL 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRL 127
            + L   G        +  D     L+       V ++F +++        RD+ +    
Sbjct: 61  DQQLKYAGNRLVVCNGAVTD----VLNQLKANHDVQRVFCHQETGGQWTYDRDRSVIHWC 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +     +   +         L+   V+      L++  V     ++P    + T  
Sbjct: 117 TENNLEYREWNQFGVV------RRLKNRDVWDKAWADLMRRPVLDSPENIPSAHSQATPL 170

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
              S      D    +       G      +L  F + +   Y      P  A++  S+L
Sbjct: 171 EGISPTFTTRD----SCGDRQAGGSTKGHKLLDSFLERRCIGYQYNMSSPLSAVKACSRL 226

Query: 246 SPYLSIGVLSPRQCWNRLK--EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           SP+++ G +S R+ + + K      + L + +    S+ + L W   +   +   P +  
Sbjct: 227 SPHIAYGSVSLREIYQQAKITGNHRNTLPRKQKSLTSFRSRLHWHCHFIQKLEDEPELEF 286

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                          DS  LQ W++G TG+P++DA MR L   GW++ R+R +  +    
Sbjct: 287 RAMHRELEHLKSGPNDSERLQRWQEGQTGWPLVDACMRALQHTGWINFRMRAMLMAVASY 346

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L + WR    +   Q  D +   +    Q    +G   +   RI+NP +Q ++ DPQG 
Sbjct: 347 QLWLHWRDPALHLARQFTDFEPGIHYPQAQMQ--SGLTGINALRIYNPVLQSQKLDPQGE 404

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDL---SLNYPLPIVDHKKACHHTLNQ 473
           FIR W+PEL  VP + IH P               Y  P+ DH++A       
Sbjct: 405 FIRRWIPELAGVPAEMIHTPWLLTPAQQQRFGGNTYIAPVCDHEQAARSARKA 457


>gi|227826669|ref|YP_002828448.1| deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25]
 gi|227458464|gb|ACP37150.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.14.25]
          Length = 433

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 140/475 (29%), Positives = 217/475 (45%), Gaps = 49/475 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +      V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F   +    ++  +++      +    
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     D            G +  + ++ +    +   Y +++D  A    + LSP
Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P 
Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 IEW  +  LLQAW +G TG+PIIDA MRQLN  G M NR+RM++A FLVK LL+
Sbjct: 265 KREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLSAFFLVKVLLI 324

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +++ 
Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKR 382

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           W+ EL +   + IH  + +  K     NYP  IVD +   +     Y   +K  +
Sbjct: 383 WVDELESYDAKIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYELCRKSKI 432


>gi|156383455|ref|XP_001632849.1| predicted protein [Nematostella vectensis]
 gi|156219911|gb|EDO40786.1| predicted protein [Nematostella vectensis]
          Length = 513

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 112/494 (22%), Positives = 196/494 (39%), Gaps = 37/494 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R DLR+ DN AL  +  N  A    V+   P   ++  +S  +  F+  SL  + 
Sbjct: 18  SMHWFRKDLRLHDNPALLESFKNCQAF-YGVYFLDPASVQRSNLSPNRWWFLLESLRDLD 76

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            +L   G      +     +  + LD    Q  + +L      E    +RD ++    ++
Sbjct: 77  YNLRSLGSRLLVVRGQPVQEMPKLLD----QWNIKRLTLEYDSEPPAKQRDAVVTHLAKN 132

Query: 130 -RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLT 185
             V         L    ++L  +  ++   +    K   Q              +     
Sbjct: 133 LGVEVIQRVSHTLYDVETVLETNDGKLPMTFDEMAKTAEQLGPPCPPCQTVDKTVFGACL 192

Query: 186 GPVTPSNIPR-----FFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRD 235
            PV P +  +       ++  + +        +  GE  AL  L    K+      E+R 
Sbjct: 193 TPVGPDHADKYGVPLLSEFGMKELKEATAKKYWTGGEPEALRRLSAALKKCAENDFEERG 252

Query: 236 IPAIQ---GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
               +     + LSPY+  G LSPR  + +L   ++    K      +    L+ RE + 
Sbjct: 253 WTIDEMFSNDAHLSPYMRFGCLSPRLYYQQLALTYMK--EKKSIPPATLFTGLVRRELFL 310

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H+ +    +       P + +  W ++   L+ WK+G TGFP IDA MRQL   GW+H+ 
Sbjct: 311 HVASHNADLDKMLD-NPLSVQFPWEENKEGLERWKEGKTGFPWIDAIMRQLREEGWIHHL 369

Query: 353 LRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQW--AASTGNDSVPYFRIF 409
            R     FL +  L V W  G + F    LD + + N   W W   +S  + +VP+   +
Sbjct: 370 ARQAVGCFLTRGCLWVSWEEGFKAFDELQLDAEWSLNASNWLWLSCSSYVHGAVPW---Y 426

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463
            P   GK+ DP G +I+ ++PE+  +P++Y+  P +         +  +  +YP PIVDH
Sbjct: 427 CPVEVGKKVDPTGDYIKRYVPEVRGLPSEYVCEPWNAPLSVQKACRCVVGEDYPSPIVDH 486

Query: 464 KKACHHTLNQYYAA 477
            +     + +    
Sbjct: 487 MEQRMICVQRMQQL 500


>gi|303287382|ref|XP_003062980.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455616|gb|EEH52919.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 561

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 133/510 (26%), Positives = 205/510 (40%), Gaps = 60/510 (11%)

Query: 1   MKATTAMSV-HLVWLR-NDLRITDNKALYAACH-----NSDAKVIAVFIATPEQ-----W 48
           M A  A S   L+W R  DLR+ DN  + AA       + D  V+ VF   P       W
Sbjct: 1   MPADDAASARVLLWFRGTDLRLRDNLVVDAASALVASGSGDVDVLPVFCFDPRTFAASAW 60

Query: 49  RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
                  R++ F+  S+L +++SL   G               + +  Y L+     +  
Sbjct: 61  GTPKTGGRRARFLLESVLDLKRSLRDVGSDLLV----AVGKPEDVIPRYLLEGGTNVVLT 116

Query: 109 NRQYEINEVRRDKLLEKRLQ---HRVICKSFDDSVLLPPGSILN--HALQMYKVYTPFRK 163
             +    E R D  +   ++    +   ++  +S +     I     A  +   +TPFR 
Sbjct: 117 QEEVHQEERRVDAAIASAVKIANPKNAMRTVWNSTMYHVDDIPFNADASDVPNGFTPFRN 176

Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVT-----PSNIPRFFDYPFQAIDPM----------- 207
            +            P P        +         P   D PF   D             
Sbjct: 177 KVESKATVRAPAPSPKPGALPLAKASIDASVLEYEPSLDDLPFATEDERARAKAPTHPNA 236

Query: 208 ---FPIGEQNALHILRKFCKE--KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN 261
              F  GE  AL  +  +  E  K+  Y E R+ +     +S+LSP+L+ G +S R    
Sbjct: 237 VLPFEGGETAALARVEYYVWESEKIKTYFETRNGMLGGDYSSKLSPWLAHGCVSARHVHR 296

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY------PSVCMGKPFIPWTEKIE 315
            +++   + +       +  + ELIWR+F+ +    +      P    G+          
Sbjct: 297 EVRKYERERV--ENKSTYWLIFELIWRDFFIYFAKKHGNAIFTPHGTAGRGGTWTGGAGP 354

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  D   L+AWK+G TGFP++DA MR+L   G+M NR R   AS+L  D  VDWR+G EY
Sbjct: 355 WRDDPAALKAWKEGKTGFPLVDANMRELAATGFMSNRGRQNVASWLCLDAGVDWRLGAEY 414

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           F S L+D D A+N G W  AA      V     FN   Q K +DP G +++ W+PEL +V
Sbjct: 415 FESALIDYDCAANWGNWVSAAGLTGGRVNK---FNIAKQTKDYDPDGRYVKTWVPELKDV 471

Query: 436 PTQYIHAPHSWL------DKNDLSLNYPLP 459
           P  ++  P              + ++YP P
Sbjct: 472 PKGFVADPRRMPGDVAKSAGCVVGVDYPAP 501


>gi|218198696|gb|EEC81123.1| hypothetical protein OsI_24002 [Oryza sativa Indica Group]
          Length = 547

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 131/488 (26%), Positives = 221/488 (45%), Gaps = 43/488 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53
           M+ +    V +VW RNDLR+ DN+A+  A   SDA V+ V+   P         +     
Sbjct: 42  MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPRISAGSTHYFGFPKT 100

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A ++ F+   L  ++++L+++G+          D     L S         ++ +++  
Sbjct: 101 GALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVYAHQETC 156

Query: 114 INEVRRDKLLEKRLQHRVI---------------CKSFDDSVLLPPGSILNHALQMYKVY 158
             E+  + L+ K L+  VI                +    + L     +      +  VY
Sbjct: 157 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVY 216

Query: 159 TPFRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFP 209
           T FRKA+     ++N  +      P P   L        +P                 F 
Sbjct: 217 TQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMHFV 276

Query: 210 IGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
            GE  AL  + ++   K+++  Y + R+ +     +++ SP+L+ G LSPR     +K  
Sbjct: 277 GGESAALGRVHEYFWKKDQLKVYKKTRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRY 336

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
               +       +  L ELIWR+++R + A Y +        P   + +W++D  L ++W
Sbjct: 337 EKQRI--ANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGG-PRNVESKWSQDQALFESW 393

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           + G TG+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D A
Sbjct: 394 RDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPA 453

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SN G W + A  GND     R F+   Q K +DP G ++ +WLPEL ++  +  + P + 
Sbjct: 454 SNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFPGAS 512

Query: 447 LDKNDLSL 454
             K  + L
Sbjct: 513 YIKQVVPL 520


>gi|115469358|ref|NP_001058278.1| Os06g0661800 [Oryza sativa Japonica Group]
 gi|113596318|dbj|BAF20192.1| Os06g0661800 [Oryza sativa Japonica Group]
          Length = 547

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 221/488 (45%), Gaps = 43/488 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53
           M+ +    V +VW RNDLR+ DN+A+  A   SDA V+ V+   P         +     
Sbjct: 42  MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VLPVYCVDPRISAGSTHYFGFPKT 100

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A ++ F+   L  ++++L+++G+          D     L S         ++ +++  
Sbjct: 101 GALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVYAHKETC 156

Query: 114 INEVRRDKLLEKRLQHRVI---------------CKSFDDSVLLPPGSILNHALQMYKVY 158
             E+  + L+ K L+  VI                +    + L     +      +  VY
Sbjct: 157 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVY 216

Query: 159 TPFRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFP 209
           T FRKA+     ++N  +      P P   L        +P                 F 
Sbjct: 217 TQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMHFV 276

Query: 210 IGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
            GE  AL  + ++   K+++  Y E R+ +     +++ SP+L+ G LSPR     +K  
Sbjct: 277 GGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRY 336

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
               +       +  L ELIWR+++R + A Y +        P   + +W++D  L ++W
Sbjct: 337 EKQRI--ANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGG-PRNVESKWSQDQALFESW 393

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           + G TG+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D A
Sbjct: 394 RDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPA 453

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SN G W + A  GND     R F+   Q K +DP G ++ +WLPEL ++  +  + P + 
Sbjct: 454 SNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFPGAS 512

Query: 447 LDKNDLSL 454
             K  + L
Sbjct: 513 YIKQVVPL 520


>gi|149725124|ref|XP_001490350.1| PREDICTED: similar to Cryptochrome-2 [Equus caballus]
          Length = 579

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 111/447 (24%), Positives = 177/447 (39%), Gaps = 30/447 (6%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F+  SL  +  SL +        +        +       +  VT+L +    E   
Sbjct: 61  RRLFLLQSLEDLDTSLRKLNSRLFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFG 116

Query: 117 VRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL 174
             RD  + K  +   V   + +   L     I+    Q     Y  F+  + +  +    
Sbjct: 117 KERDAAIMKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPRKP 176

Query: 175 -------RSLPVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCK 224
                  +     A           +P   +  F  + + P  +  GE  AL  L K  +
Sbjct: 177 VGSVTSQQMESCRADIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLE 236

Query: 225 EKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            K +   Y   R   A  +   + LSPYL  G LS R  + RL + +  +  +  +   S
Sbjct: 237 RKAWVANYERPRMNAASLLASPTGLSPYLRFGCLSCRLFYYRLWDLYRKVK-RNSTPPLS 295

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
              +L+WREF+       P     +   P   +I W+++   L  W +  TGFP IDA M
Sbjct: 296 LFGQLLWREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEAKTGFPWIDAIM 354

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
            QL   GW+H+  R   A FL + DL V W  G   F   LLD D + N G W W  S  
Sbjct: 355 TQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCS 413

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLS 453
                +F  + P   G+R DP G +IR +LP+L   P++YI+ P +  +      K  + 
Sbjct: 414 AFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPEAVQKAAKCIIG 473

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           ++YP PIV+H +     + +     +Q
Sbjct: 474 VDYPRPIVNHAETSRLNIERMKQIYQQ 500


>gi|229583833|ref|YP_002842334.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27]
 gi|228018882|gb|ACP54289.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.27]
          Length = 433

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 140/475 (29%), Positives = 217/475 (45%), Gaps = 49/475 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +      V  ++ N  Y      RD+ + K  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRKYCE 116

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F   +    ++  +++      +    
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     D            G +  + ++ +    +   Y +++D  A    + LSP
Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIER---ARQINY-DRKDFVAEDNRTFLSP 217

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R+ +  L +                + +L WR+FY  L+A+Y      +P 
Sbjct: 218 HLKFGTLSIREVYYSLLDSQA------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 IEW  +  LLQAW +G TG+PIIDA MRQLN  G M NR+RM++A FLVK LL+
Sbjct: 265 KREYNCIEWENNERLLQAWVEGKTGYPIIDAGMRQLNRTGDMPNRVRMLSAFFLVKVLLI 324

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +++ 
Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKR 382

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           W+ EL +   + IH  + +  K     NYP  IVD +   +     Y   +K  +
Sbjct: 383 WVDELESYDAEIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYELCRKSKI 432


>gi|307826658|gb|ADN94464.1| cryptochrome [Helicoverpa armigera]
          Length = 548

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 108/500 (21%), Positives = 190/500 (38%), Gaps = 39/500 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R+ LR+ DN +L++A          +FI   E      +   +  ++  +L  + 
Sbjct: 5   SVLWFRHGLRLHDNPSLHSALEEKGFPFFPIFIFDGETAGTKLVGYNRMRYLLEALDDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
               + G      +                +  + KL + +  E     RD  ++   + 
Sbjct: 65  SQFKKFGGRLIMLKGKPNV----VFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKSACKE 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V+C+      L  P +++     +  +        +  +         +    +    
Sbjct: 121 IGVVCREHVSHTLWEPETVIKANGGIPPLTYQMFLHTVATIGDPPRPVPNIDFTGVKFGS 180

Query: 189 TPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVY----- 228
            P    + F    +   P                +  GE  AL  +++    +       
Sbjct: 181 LPECFYQEFTVYDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLSVEYETFLRG 240

Query: 229 YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWL-NE 284
            Y+     P + G    LSP L  G LS R  +  +++ F  +       + A  ++  +
Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWAVQDLFRQVHQGRLTTNSASHFITGQ 300

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQL 343
           LIWRE++  +    P+        P    I W       LQ W +G TGFP +DAAMRQL
Sbjct: 301 LIWREYFYTMSVNNPNYG-QMAGNPICLDIPWKNPEGDELQRWVEGRTGFPFVDAAMRQL 359

Query: 344 NTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
            T GW+H+  R   ASFL +  L + W  G  +F+  LLD D +   G W W +S+  ++
Sbjct: 360 RTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEA 419

Query: 403 -VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455
            +       P   G+R DP G ++R ++PEL  +P +YI+ P              +  +
Sbjct: 420 LLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQERATCVIGKD 479

Query: 456 YPLPIVDHKKACHHTLNQYY 475
           YP P+V+H  A     N   
Sbjct: 480 YPAPVVNHLVAAQRNKNAMK 499


>gi|254515582|ref|ZP_05127642.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3]
 gi|219675304|gb|EED31670.1| deoxyribodipyrimidine photolyase [gamma proteobacterium NOR5-3]
          Length = 488

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 115/482 (23%), Positives = 180/482 (37%), Gaps = 24/482 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVWL+ DLR+ D+  L AA     + ++ ++   PE       S R   F++ SL  ++
Sbjct: 3   TLVWLKRDLRLQDHAPLRAAIAAGSSTLL-LYCFEPELLSDPHYSDRHWRFVWQSLEDMR 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQ 128
           +SL  +            +     L    LQ    +++   +  + +   RD+ +   LQ
Sbjct: 62  RSLGPQASALHVCLGDPREIFARLLQDGQLQ----RVYSYEETGLAKTFARDRDVAAMLQ 117

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              I      S  +  G                      N  +    +     ++     
Sbjct: 118 SHGIPWEEFPSNGVQRGRCNRKGWNRDWGRQMNTPCDTTNPQEIYSNAAAGSTLKAFHLT 177

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246
            P          FQ        GE  A   LR F + +V  Y      P  + +  S+LS
Sbjct: 178 DPPQSWTASHKDFQT------GGESTARRTLRDFLERRVSGYARNISKPLASRESCSRLS 231

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ G LS RQ +  L E        P     ++ + L W   +             + 
Sbjct: 232 PYLAWGNLSIRQVYQALGE--AQNRGGPSRALQAFESRLHWHCHFIQKFEMECR-MEHED 288

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                           ++AW QG TG+P+IDA+MR L   G+++ R R +  SFL   L 
Sbjct: 289 INRGYLAHPRAFCEDRVRAWAQGNTGYPLIDASMRCLAATGYINFRSRAMLVSFLTHHLW 348

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
            DWR+G  +     LD +   +    Q     G   +   RI+NP  Q +  DP G FIR
Sbjct: 349 QDWRVGAAHLAGLFLDFEPGIHFAQLQMQ--AGVTGINTIRIYNPVKQSEEHDPDGVFIR 406

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDL-----SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            W+PEL  VP   IH P        +     +  Y  PIVD  +      ++ +A K  S
Sbjct: 407 QWVPELAEVPAPMIHRPWDLSPMEQIIYGLDTKAYSPPIVDVSETYRSARDRLWALKDDS 466

Query: 482 LL 483
           ++
Sbjct: 467 VV 468


>gi|330752633|emb|CBL87577.1| deoxyribodipyrimidine photolyase [uncultured Flavobacteria
           bacterium]
          Length = 485

 Score =  306 bits (783), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 113/490 (23%), Positives = 206/490 (42%), Gaps = 34/490 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            +++++VW++ DLR  D+++ + A  + +   + V+I   +       S R   FIY SL
Sbjct: 3   KLAINIVWIKRDLRTLDHES-FHAAESKNIPYLPVYIFDNDLIDYPDTSDRHLGFIYNSL 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLE 124
           + + K LS      +      +  S++       Q ++  +F  ++  I +  +RD  + 
Sbjct: 62  IDINKKLSSFNKEVEIL----YGPSLDIFKYLITQFKIENIFSYQESGIKQSWQRDIKVR 117

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           K      I     + V      I+            +   +   +++   +         
Sbjct: 118 KFCNENSI-----NWVEFQRDGIIRGIKDRKNWNKNWHIQMHSQIIENSFKKQKKLKFLN 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
             P+    I R        ++   P GE  A   L+ FC +++  Y      P  +    
Sbjct: 173 KFPLPKKLINRINS----NLNSFQPAGESMAWKYLKSFCNKRISGYAYNISKPEKSRISC 228

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM---AFYP 299
           S+LSPY+S G L+ +  ++ L +            A   ++ L W   +         Y 
Sbjct: 229 SRLSPYISWGNLNIKLVYHHLIKLKKKNKNLRSINAV--ISRLHWHCHFIQKFEVDCTYE 286

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +  + K F     K     +   ++AW++G TG+P++DA+MR +   GW++ R+R +  S
Sbjct: 287 TDFINKGFNSLKRK----TNIKYIKAWEEGKTGYPLVDASMRAVKNTGWINFRMRAMLVS 342

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F V +L  DWR G  +   Q LD +   +   +Q     G   +   RI+NP    K  D
Sbjct: 343 FFVHNLDQDWRDGVYFLAKQFLDYEPGIHYTQFQMQ--AGTTGINTIRIYNPVKNSKDHD 400

Query: 420 PQGTFIRHWLPELNNVPTQYIHAP------HSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           P G FI+ W+PEL N+P ++IH P       S + K  +  +YP PIV+ K+   H   +
Sbjct: 401 PDGVFIKKWIPELKNIPKEFIHEPCLISEMESEIYKFKIGKDYPSPIVNLKETSKHAKEK 460

Query: 474 YYAAKKQSLL 483
            +   K  ++
Sbjct: 461 IWGHLKNKMV 470


>gi|222636034|gb|EEE66166.1| hypothetical protein OsJ_22248 [Oryza sativa Japonica Group]
          Length = 547

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 220/488 (45%), Gaps = 43/488 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-------WRQHGI 53
           M+ +    V +VW RNDLR+ DN+A+  A   SDA V  V+   P         +     
Sbjct: 42  MRRSGGGGVAIVWFRNDLRVLDNEAVVRAWAASDA-VFPVYCVDPRISAGSTHYFGFPKT 100

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            A ++ F+   L  ++++L+++G+          D     L S         ++ +++  
Sbjct: 101 GALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPED----ILPSIAKAVTAHTVYAHKETC 156

Query: 114 INEVRRDKLLEKRLQHRVI---------------CKSFDDSVLLPPGSILNHALQMYKVY 158
             E+  + L+ K L+  VI                +    + L     +      +  VY
Sbjct: 157 SEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVY 216

Query: 159 TPFRKAL-----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----MFP 209
           T FRKA+     ++N  +      P P   L        +P                 F 
Sbjct: 217 TQFRKAVESKSSVRNCSKLPPSLGPPPGSGLDEIGGWGTVPTLESLGLSMTKAEKGMHFV 276

Query: 210 IGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
            GE  AL  + ++   K+++  Y E R+ +     +++ SP+L+ G LSPR     +K  
Sbjct: 277 GGESAALGRVHEYFWKKDQLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRYICEEVKRY 336

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
               +       +  L ELIWR+++R + A Y +        P   + +W++D  L ++W
Sbjct: 337 EKQRI--ANDSTYWVLFELIWRDYFRFISAKYGNSIFHLGG-PRNVESKWSQDQALFESW 393

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           + G TG+P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D A
Sbjct: 394 RDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPA 453

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SN G W + A  GND     R F+   Q K +DP G ++ +WLPEL ++  +  + P + 
Sbjct: 454 SNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYDPDGEYVAYWLPELRSIAKERRNFPGAS 512

Query: 447 LDKNDLSL 454
             K  + L
Sbjct: 513 YIKQVVPL 520


>gi|22327046|ref|NP_568461.2| CRY3 (cryptochrome 3); DNA binding / DNA photolyase/ FMN binding
           [Arabidopsis thaliana]
 gi|119390180|pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
           Thaliana
 gi|238828067|pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
 gi|238828069|pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
 gi|238828070|pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
 gi|238828071|pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
 gi|238828072|pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
 gi|18086429|gb|AAL57669.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
 gi|20857182|gb|AAM26705.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
 gi|332005986|gb|AED93369.1| cryptochrome DASH [Arabidopsis thaliana]
          Length = 526

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 118/460 (25%), Positives = 208/460 (45%), Gaps = 25/460 (5%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57
                V ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +
Sbjct: 37  RKGKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALR 95

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+   L+ ++K+L ++G+              E L S         +F +++    EV
Sbjct: 96  GGFLMECLVDLRKNLMKRGLNLLIRSGKPE----EILPSLAKDFGARTVFAHKETCSEEV 151

Query: 118 RRDKLLEKRLQHRV---ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
             ++L+ + L+        +    S +     +      +  VYT FRK++         
Sbjct: 152 DVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSS 211

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHI-LRKFCK-EKVY 228
             +P+            ++P       +  +      F  GE   +      F K + + 
Sbjct: 212 TRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLK 271

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y E R+ +     +++ SP+L+ G +SPR  +  ++    + +    +  +  L ELIW
Sbjct: 272 VYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV--ANNSTYWVLFELIW 329

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+++R L     +        P   + +W++D  L ++W+   TG+P+IDA M++L+T G
Sbjct: 330 RDYFRFLSIKCGNSLFHLGG-PRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTG 388

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  GND     R
Sbjct: 389 FMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DR 447

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
            F+   Q + +DP+G ++  WL +L  +P +  H P   +
Sbjct: 448 YFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM 487


>gi|150261312|pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
 gi|150261313|pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
 gi|28971609|dbj|BAC65244.1| cryptochrome dash [Arabidopsis thaliana]
          Length = 525

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 118/460 (25%), Positives = 208/460 (45%), Gaps = 25/460 (5%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57
                V ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +
Sbjct: 36  RKGKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALR 94

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+   L+ ++K+L ++G+              E L S         +F +++    EV
Sbjct: 95  GGFLMECLVDLRKNLMKRGLNLLIRSGKPE----EILPSLAKDFGARTVFAHKETCSEEV 150

Query: 118 RRDKLLEKRLQHRV---ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
             ++L+ + L+        +    S +     +      +  VYT FRK++         
Sbjct: 151 DVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSS 210

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHI-LRKFCK-EKVY 228
             +P+            ++P       +  +      F  GE   +      F K + + 
Sbjct: 211 TRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLK 270

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y E R+ +     +++ SP+L+ G +SPR  +  ++    + +    +  +  L ELIW
Sbjct: 271 VYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV--ANNSTYWVLFELIW 328

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+++R L     +        P   + +W++D  L ++W+   TG+P+IDA M++L+T G
Sbjct: 329 RDYFRFLSIKCGNSLFHLGG-PRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTG 387

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  GND     R
Sbjct: 388 FMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DR 446

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
            F+   Q + +DP+G ++  WL +L  +P +  H P   +
Sbjct: 447 YFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM 486


>gi|238618755|ref|YP_002913580.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4]
 gi|238379824|gb|ACR40912.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus islandicus M.16.4]
          Length = 433

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 139/475 (29%), Positives = 217/475 (45%), Gaps = 49/475 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--ISARQSHFIYASLLQV 68
           L   R DLR+ DN  L  A  + + KVI  FI  P Q        S    +F+  SL ++
Sbjct: 4   LFIFRRDLRLDDNTGLIKALEDCE-KVIPAFILDPRQVGNENEYKSEFAINFMINSLNEL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L ++G     +    F  + E + +      V  ++ N  Y      RD+ + +  +
Sbjct: 63  NDELRKRGSRLYVY----FGLAEEVIKNLLK--DVDAVYLNEDYTPFSKMRDERIRRYCE 116

Query: 129 HRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I KSF+D +L       N     Y+ +T F   +    ++  +++      +    
Sbjct: 117 DTGKIMKSFEDYLLTSKNDFKN-----YRNFTTFYNVVKNKQIRKPVQNNYTNYYK---- 167

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                     D            G +  + ++ +    +   Y +++D  A    + LSP
Sbjct: 168 ------NSLGDEHELPPRQGERGGRKEGIKLIGR---ARQIDY-DRKDFVAEDNRTFLSP 217

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R+ +  L +  V             + +L WR+FY  L+A+Y      +P 
Sbjct: 218 HLKFGTLSIREVYYSLLDSQV------------IIRQLYWRDFYT-LLAYYNERVFHEPL 264

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 IEW  +  L QAW +G TG+PIIDA MRQLN  G + NR+RM+TA FLVK LL+
Sbjct: 265 KREYNCIEWENNERLFQAWVEGKTGYPIIDAGMRQLNRTGDIPNRVRMLTAFFLVKVLLI 324

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DWRIGE+YF S+L+D D + NNG WQW AS G D +  FR+F+P  Q   +DP+  +++ 
Sbjct: 325 DWRIGEKYFASKLIDYDPSVNNGNWQWIASVGTDYI--FRVFDPWKQQITYDPEAKYVKR 382

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           W+ EL +   + IH  + +  K     NYP  IVD +   +     Y   +K  +
Sbjct: 383 WVDELESYDAEIIHNAYKYTLK-----NYPKSIVDWRIRVNLAKRLYEVCRKSKI 432


>gi|330448317|ref|ZP_08311965.1| DNA photolyase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492508|dbj|GAA06462.1| DNA photolyase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 491

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 123/492 (25%), Positives = 208/492 (42%), Gaps = 39/492 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
             V++VWL+ DLR++D++AL  A  NSD  V+ ++I  P        S R   FI+ SL 
Sbjct: 2   KKVNVVWLKRDLRLSDHQALSVAA-NSDLPVMLIYIMEPMLLSDPHYSERHWRFIWQSLQ 60

Query: 67  QVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLE 124
            +   L+     VF +H      +++E LD       +  LF +++  +     RD  ++
Sbjct: 61  DINHQLAGVNSQVFIFH-----GNAVECLDKLMHHFPINALFSHQEIGLGCTFERDLNIK 115

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + ++    F        G+++  A         +       +++A L S+ +  + 
Sbjct: 116 AWCDKQQIQWHEFQQ------GAVIRGAKNRTNWDKHW-----NRVMRAPLYSVNLDKVN 164

Query: 184 LTGPVTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--A 238
                        F  P    + +  M   G   AL  L  F   +   Y      P  +
Sbjct: 165 WVSISPDQLADMLFSPPKSWCERVQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTAS 224

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S+LSPYL+ G +S RQ + ++   +     +    A S  + L W   +       
Sbjct: 225 RTACSRLSPYLAWGNISLRQVYQQVLAHWNVKGFRRSLIALS--SRLHWHCHFIQKFESE 282

Query: 299 PSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P +   CM + +     +   +KD   L AWK+G TG P+IDA MR L   G+++ R+R 
Sbjct: 283 PDIEFFCMNRTYDRLLTQY-CSKDELKLNAWKEGNTGIPLIDACMRCLYHTGYINFRMRS 341

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +  SFL   L +DWR G  +     LD +   +   +Q     G   +   RI+NPT Q 
Sbjct: 342 MLVSFLTHHLNIDWRDGVTHLAQLFLDFEPGIHYSQFQMQ--AGVTGINTIRIYNPTKQA 399

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHH 469
           +  DP G FI  W+PEL NVP   +  P +  +      + D +  Y  PIVD +++   
Sbjct: 400 QEHDPDGKFIHKWVPELANVPAPLLFEPWTLTELKIVMYQLDNNSCYLSPIVDLERSAKE 459

Query: 470 TLNQYYAAKKQS 481
              + +  + ++
Sbjct: 460 ARERLWGWRSRA 471


>gi|298708263|emb|CBJ48326.1| cryptochrome 3 [Ectocarpus siliculosus]
          Length = 549

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 130/501 (25%), Positives = 206/501 (41%), Gaps = 49/501 (9%)

Query: 8   SVHLVWLRN-DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61
           ++ +VW +  DLR+ D++ L  A  NS + V  VF      +         +SA +  F+
Sbjct: 22  TIGVVWFKCTDLRLEDHEPLALAHRNS-SHVAHVFCIDDRWFGHSRRGTRRMSAARCRFL 80

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+  +Q  L  KG      +    +                 ++ +      E     
Sbjct: 81  LESVADLQTRLRAKGSDLLIRRGHPENAIPAVAARLGSGASAVTVYAHPDLCSEENDVHA 140

Query: 122 LLEKRL------------QHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQN 168
            ++  L               V       + L  P  +  +    + +V+TPFRKA+  N
Sbjct: 141 AVKSALSLVGSAGGVGGDATGVSVTEVWGNTLHDPSDLPYDFPNGLPEVFTPFRKAVEPN 200

Query: 169 LVQADLRSLPVPAIRLTG--------PVTPSNIPRFFDYPFQAIDP-------MFPIGEQ 213
                   LP P   L          P     IP   +                F  GE 
Sbjct: 201 CKIRSPVPLPSPFRPLPAGLHDNAVTPTLTVAIPTTEELGLGTAPERDARSVLHFIGGET 260

Query: 214 NALHILRKFCKEKVY--YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
             L  ++ +  E+ +   Y   R+ +     +S+ SP+L++G LSPR     +++   D 
Sbjct: 261 AGLRRVQTYIWEEDHLREYKVTRNGLLGGGFSSKFSPWLALGCLSPRTIVKEIRKYETDR 320

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-IPWTEKIEWNKDSHLLQAWKQG 329
           +       +  + EL+ R+F+R+    Y +           +++  W  D+ LL AWK+G
Sbjct: 321 I--ANDSTYWLIFELLVRDFFRYSAVKYGNAIFHLGGSRRDSDRQTWRDDAGLLAAWKEG 378

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG+P +DA MR+L   G+M NR R + ASF  KDL +DWR+G E+F   LLD D ASN 
Sbjct: 379 RTGYPFVDANMRELKASGFMSNRGRQVVASFFTKDLEMDWRLGAEHFEEYLLDYDPASNY 438

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY------IHAP 443
           G W + A  G D     R F+   Q + +D  G ++RHWLPEL  + T+       I A 
Sbjct: 439 GNWNYVAGVGFDPRE-DRYFSVEKQARTYDADGDYVRHWLPELAMLTTEALQSAGGITAT 497

Query: 444 HSWLDKNDLSLNYPLPIVDHK 464
              +     S+ YP P+V  K
Sbjct: 498 LREVHSVPTSV-YPDPVVPLK 517


>gi|294811681|ref|ZP_06770324.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440135|ref|ZP_08214869.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC
           27064]
 gi|294324280|gb|EFG05923.1| deoxyribodipyrimidine photo-lyase [Streptomyces clavuligerus ATCC
           27064]
          Length = 453

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 131/461 (28%), Positives = 212/461 (45%), Gaps = 22/461 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V ++   +DLR+ D  AL AA   +D +V+ +F+      R    +  +  F+  SL 
Sbjct: 1   MTVSVILFTSDLRVHDQPALAAAVREAD-EVVPLFVLDRGVRRSGFDAPNRLAFLADSLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + + L ++G            D  E +     +     +           RR+  L   
Sbjct: 60  ALDEELRERGGRLVLRTG----DVAEQVGRVVTETGARTVHLAAGVSAYARRREDRLRAG 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L          + V+  +PPG++       + V+TP+ +       +   R +      L
Sbjct: 116 LSGLRCGLRVHEGVITVVPPGAVTPANRDHFAVFTPYFRRW----AEVAPRRVLAAPRSL 171

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           T P  P +              +   GE+     LR++    +  Y E  D      TS+
Sbjct: 172 TVPELPGHPLPRRRSVTGTAPALARGGEREGRERLRRWLARDLDGYAEHHDDLPGDATSR 231

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+L  G LS  +   R +        +   GA +++ +L WR+F+  ++A  P     
Sbjct: 232 LSPHLHFGTLSAAELVQRAR-------GRGGPGAQAFVRQLAWRDFHHQVLAARPDAA-H 283

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             + P  ++  W  D   + AWK+G TG P++DA MRQL   GWMHNR R++TAS+L K 
Sbjct: 284 ADYRPRGDR--WRGDEREIAAWKEGRTGCPVVDAGMRQLRHEGWMHNRARLLTASYLTKT 341

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L  DWR+G  +F+  L+DGD+A N   WQW A TG D+ P  R+ +P  Q +RFDP G +
Sbjct: 342 LYTDWRVGARHFLELLVDGDIADNQLNWQWVAGTGTDTRP-GRVLSPLAQARRFDPHGAY 400

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           +R W+PEL ++  + IH+P +        L YP P++D  +
Sbjct: 401 VRRWVPELADLGDREIHSPETLDPARRARLGYPDPLIDPAE 441


>gi|195157984|ref|XP_002019874.1| GL12637 [Drosophila persimilis]
 gi|198455482|ref|XP_001360014.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
 gi|205696352|sp|Q293P8|CRY1_DROPS RecName: Full=Cryptochrome-1
 gi|194116465|gb|EDW38508.1| GL12637 [Drosophila persimilis]
 gi|198133263|gb|EAL29166.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
          Length = 540

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 126/515 (24%), Positives = 207/515 (40%), Gaps = 50/515 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL AA    D    +I VFI   E      +   +  F+  SL  
Sbjct: 7   NVLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAGTKSVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           + + L      +G +F +                  Q R+ K+      E     RD+  
Sbjct: 67  LDEQLQSATEGRGRLFVFEGEPTL-----IFRRLHEQVRLHKICAELDCEPIWNERDESA 121

Query: 124 EKRLQHRVIC------KSFDDSVLL-------PPGSILNHALQMYKVYTPFRKALIQNLV 170
               +   I        +  D  L+       PP +       +  +  P R A+  ++ 
Sbjct: 122 RLLCRELGIEYVEKVSHTLWDPRLVIETNGGIPPLTYQMFLHTVQIIGVPPRPAIDAHIN 181

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226
            A    L     +  G       P  F+     +  +    +  GE  AL +L +  K +
Sbjct: 182 DATFIQLAPELRQHLGCFDQVPNPEHFNIYSDNMGFLAKINWRGGETQALALLEERLKVE 241

Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275
              +     +P        +    +S +L  G LS R+ +  + + F ++ +        
Sbjct: 242 RNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRRFYWSVHDLFENVQLAACVRGVQ 301

Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333
             G      +LIWRE++  +    P+    +        I W K D +LLQ W+ G TGF
Sbjct: 302 IEGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NEICLTIPWAKPDENLLQRWRLGQTGF 360

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           P+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +   G W
Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPGLKHFLKYLLDADWSVCAGNW 420

Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
            W +S+  + +     +  P    KR DP+G +IR ++PEL N+P +YIH P     +  
Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPEGVYIRRYVPELKNLPKEYIHEPWRLSAEQQ 480

Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                 + ++YP  I+D  KA    +    A +  
Sbjct: 481 VKFECLIGVHYPERIIDLSKAVKRNMMAMTALRNS 515


>gi|149916244|ref|ZP_01904765.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b]
 gi|149809904|gb|EDM69755.1| Deoxyribodipyrimidine photolyase [Roseobacter sp. AzwK-3b]
          Length = 494

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 112/479 (23%), Positives = 188/479 (39%), Gaps = 30/479 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W + DLRI D+ AL+ A       V+ V+I  PE WRQ   S RQ  F+   L  +++
Sbjct: 2   ICWFKRDLRIADHPALHMAA--GLGPVLPVYILEPELWRQDDASGRQYAFLTECLTDLRE 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
            L++ G+           D++E LD          L  + +        RD+ +    + 
Sbjct: 60  DLARAGLSLVLR----VGDAVEVLDDLRRSFGAAHLVSHEETGNGWTYARDRRVAGWARS 115

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           + +         +P   ++       +  +     +    +   +    V A        
Sbjct: 116 QGVVWHE-----VPQCGVVRRLATRDRWQSGRDGFMRAPQLGVPVGLHGVEA-------P 163

Query: 190 PSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246
             ++P       +   P     G +     L+ F  ++   Y      P    Q  S++S
Sbjct: 164 SDDLPDAMALGLKDSCPQRQKGGRRAGQATLQSFLHDRGQTYRRAMSSPLEGAQACSRIS 223

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDL---LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           P+L+ G LS R+           +            S+ + L WR+ +   +   P++  
Sbjct: 224 PHLAFGTLSVREAVQAGAARAAAVKGGRDGWSGSMRSFQSRLAWRDHFMQKLEDEPAL-E 282

Query: 304 GKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            +   P  E +     D+  LQAW +G TG P +DA MR L   GW++ R+R +  +   
Sbjct: 283 YRCLHPAYEGLRPQTPDATRLQAWSKGETGLPFVDACMRSLAATGWLNFRMRSMVMAVAS 342

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
             L +DW+           D +   +    Q    +G   +   RI+NP  QG   DP G
Sbjct: 343 YHLWLDWKATGPVLARLFTDYEPGIHWSQVQMQ--SGTTGMNTIRIYNPVKQGHDQDPTG 400

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            F RHWLPEL +VP  Y+  P +W      L   YP P+VD  +A      Q +A +++
Sbjct: 401 AFTRHWLPELADVPDAYLQTPWAWGGAGRLLGRRYPEPLVDVARAAKTAREQVWAVRRR 459


>gi|70606996|ref|YP_255866.1| deoxyribodipyrimidine photolyase [Sulfolobus acidocaldarius DSM
           639]
 gi|68567644|gb|AAY80573.1| deoxyribodipyrimidine photolyase [Sulfolobus acidocaldarius DSM
           639]
          Length = 430

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 144/469 (30%), Positives = 226/469 (48%), Gaps = 46/469 (9%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-WRQHGISARQSHFIYASLLQVQK 70
           V  R DLR+ DN AL  A ++ + K+  +FI  P Q       S   + F+  SL+++ K
Sbjct: 5   VIFRRDLRLFDNTALVNAVYHCN-KIYPIFIVDPRQMINNPYKSEFAATFLINSLVELDK 63

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-RLQH 129
            L+    V+  +     ++ +  LD       V  +F N  Y    ++RD+ +++  L  
Sbjct: 64  ELNGNLNVYYGYP----ENIVSKLDM------VNAIFINEDYTPFAIQRDEKMKENALNK 113

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +   S+ D +L    S     +++ + +TPF     +  V    +   V        ++
Sbjct: 114 GIKFFSYPDVLL----SAEEKKIKIGRSFTPFYTKARELEV---PKPQSVDKSINVERIS 166

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
            S    F     +   P+   G    L +L      +   Y  ++D PA +  S LSP+L
Sbjct: 167 NSLSIDFLLTFKKVESPLLKGGRPEGLMLLD-----REIDYS-RKDYPAEKNYSMLSPHL 220

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G +SPR+ +++            K    ++  +L WR+FY  L    P V  G  F  
Sbjct: 221 KFGTVSPREVYHK------------KISDQAFTRQLYWRDFYTLLAYQNPYV-FGHSFKT 267

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             +KI+W        AWK G TG+PIIDA MR LNT G+++ R+RM+ A FL K L VDW
Sbjct: 268 EYDKIKWENSERYFNAWKDGMTGYPIIDAGMRALNTTGFINGRVRMLVAFFLTKVLFVDW 327

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R+GE YF ++L+D D A NNG WQW ASTG D +  FR+F+P  Q +++DP+  FI+ ++
Sbjct: 328 RLGERYFATKLVDYDPAVNNGNWQWVASTGTDYI--FRVFDPWKQQEKYDPEAKFIKDYV 385

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
            EL + P   IH    +L K      YP PIV+ ++        Y++ K
Sbjct: 386 RELRDYPPSVIH--KVYLHKI---TGYPSPIVNWRERVEMVKQVYFSTK 429


>gi|195055524|ref|XP_001994667.1| GH17366 [Drosophila grimshawi]
 gi|193892430|gb|EDV91296.1| GH17366 [Drosophila grimshawi]
          Length = 539

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 115/516 (22%), Positives = 209/516 (40%), Gaps = 52/516 (10%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL +A  + D    +I +FI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPALLSALADKDYGIALIPIFIFDGESAGTKSVGYNRMRFLLDSLDD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           + K L +    +G +             +       Q R+ K+      E     RD+ +
Sbjct: 67  IDKQLKEVSDGQGGLLICE-----GQPTDIFRRLHDQVRLHKICVELDCEPIWNERDEAI 121

Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA- 181
               +   +         L  P ++++    +  +        + +++    R +  P  
Sbjct: 122 NNLCRELGIEYVEMVSHTLWDPRTVIDTNGGIAPLTYQMFLHTV-HIIGLPPRPVHDPQF 180

Query: 182 ------------IRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKE 225
                        R  G +  +  P  F+     +  +    +  GE  AL +L +  K 
Sbjct: 181 DGVGFVQLSAEMRREIGCLEKTPSPEHFNVYSDNMGTLAKINWVGGESQALLLLGERLKV 240

Query: 226 KVYYYVEQRDIPA------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK---- 275
           + + +     +P       +     +S +L  G LS R+ +  + + F ++ ++      
Sbjct: 241 EQHAFERGYYLPNQALPNIVDKPKSMSAHLRFGCLSVRRFYWNVHDLFKNVQLRACIRGV 300

Query: 276 --SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTG 332
             +       +LIWRE++  +    P     +        I W K +   LQ W+ G TG
Sbjct: 301 QMTSGAHITGQLIWREYFYTMSVNNPQYDRMEG-NEICLNIPWAKPNEDHLQRWRLGQTG 359

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           FP+IDAAMRQL   GW+H+ LR   A+FL +  L  +W  G ++F+  LLD D +   G 
Sbjct: 360 FPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYLLDADWSVCAGN 419

Query: 392 WQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
           W W +S+  +  +   ++  P    KRFDP G +I+ ++PEL NV  ++IH P     + 
Sbjct: 420 WMWVSSSAFERLLDTSQVSCPVALAKRFDPNGVYIKQYVPELRNVTKEFIHEPWRMTAEQ 479

Query: 451 D------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                  + ++YP  I+D   A    +    A +  
Sbjct: 480 QEIAECLIGVHYPERIIDLSLASKRNMAAMKALRNS 515


>gi|324103935|gb|ADY17887.1| cryptochrome [Spodoptera exigua]
 gi|324103937|gb|ADY17888.1| cryptochrome [Spodoptera exigua]
          Length = 548

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 111/500 (22%), Positives = 191/500 (38%), Gaps = 39/500 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R+ LR+ DN +L++A          +FI   E      +   +  ++  +L  + 
Sbjct: 5   SVLWFRHGLRLHDNPSLHSALEEKGFPFFPIFIFDGETAGTKVVGYNRMRYLLEALDDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
               + G      +                +  + KL + +  E     RD  ++   + 
Sbjct: 65  SQFKKHGGRLIMLKGKPNV----VFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKNACKE 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V+CK      L  P +++     +  +        +  +         V    +    
Sbjct: 121 IGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVGEVDFTGVKFGS 180

Query: 189 TPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVY----- 228
            P +    F    +   P                +  GE  AL  +++    +       
Sbjct: 181 LPESFYNEFTVFDKTPKPEDLGVFLETEDIRMIRWVGGETTALKQMQQRLTVEYETFLRG 240

Query: 229 YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWL-NE 284
            Y+     P + G    LSP L  G LS R  +  +++ F  +       + A  ++  +
Sbjct: 241 SYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLTSNSASHFITGQ 300

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQL 343
           LIWRE++  +    P+        P    I W   S   LQ W +G TGFP +DAAMRQL
Sbjct: 301 LIWREYFYTMSVNNPNYG-QMAGNPICLDIPWKTPSGDELQRWMEGRTGFPFVDAAMRQL 359

Query: 344 NTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
            T GW+H+  R   ASFL +  L + W  G  +F+  LLD D +   G W W +S+  ++
Sbjct: 360 RTEGWLHHAARNTVASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEA 419

Query: 403 -VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLN 455
            +       P   G+R DP G ++R ++PEL  +P +YI+ P              +  +
Sbjct: 420 LLDSGECACPVRLGQRLDPSGEYVRRYVPELARMPVEYIYEPWKAPIDVQERASCIIGKD 479

Query: 456 YPLPIVDHKKACHHTLNQYY 475
           YP P+V+H  A     N   
Sbjct: 480 YPDPVVNHLVAAQRNRNAMK 499


>gi|15790677|ref|NP_280501.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
 gi|169236417|ref|YP_001689617.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
 gi|10581208|gb|AAG19981.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
 gi|167727483|emb|CAP14271.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
          Length = 462

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 129/479 (26%), Positives = 206/479 (43%), Gaps = 32/479 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL W + DLR+ DN+ L+AA       V+ V++       Q  +   +  F+ A +  +
Sbjct: 1   MHLYWHQRDLRVPDNRGLHAA--TDGDTVVPVYVFDDTVLSQ--VGRPKRAFLAAGVRAL 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +  ++G      +     D+   L +   +     +F+   Y+     R   +   L 
Sbjct: 57  RAAYRERGSDLLVREG----DAESVLPALADEFDADTVFHAAHYDAARRNRRTRVADALA 112

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +      D  L+ P ++ +      + Y  +         Q   +  PVPA      
Sbjct: 113 AAGVDTAGHVDHTLVDPATLDDAYPSHSQFYDDW---------QQAPKPDPVPAPDADAL 163

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----- 241
               +          A +P  P  G   A   L  F  + +  Y + RD  A        
Sbjct: 164 ADVHDDHTL---SVPAPEPPLPDAGHAAATDRLAAFLDDGIASYNDTRDDLAAAVDAPAS 220

Query: 242 -TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LSPYL+ G +  R+ W  + + + D           +  EL WRE   HL+   P 
Sbjct: 221 AVSRLSPYLAAGNIGVREVWAAVADAYDDATGNAARNIGKYRYELSWREQNYHLLYHTPR 280

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +   + ++ +   I W       +AW +G TG+P++DA MRQL   G++HNR R + ASF
Sbjct: 281 L-QTENYVSFDAPIAWQNSDDHFEAWTRGETGYPLVDAGMRQLRAEGYVHNRPRQVVASF 339

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K LLVDWR GE +F  +L+D D A+N   WQW ASTG D+V   RIF+P  Q  ++D 
Sbjct: 340 LTKHLLVDWRRGERHFADRLVDYDPANNAANWQWTASTGTDTV-AVRIFDPVSQMAKYDS 398

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
              F+  ++PEL  V  + I    +     +  L+ +Y  PIVD   A       + AA
Sbjct: 399 DAAFVTEYVPELRGVDPETIVDWPTLRHSQRERLAPDYHHPIVDRDHAYERAQRVFEAA 457


>gi|294508369|ref|YP_003572427.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
 gi|294344697|emb|CBH25475.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
          Length = 537

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 115/491 (23%), Positives = 203/491 (41%), Gaps = 39/491 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW + DLR+ D++ L  A       V+ +++A P          R    I  +L+++
Sbjct: 49  TQIVWYKRDLRVGDHRPLAEAADRG--PVLPLYVAEPSIAAGADYHPRHWTLIREALIEL 106

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
           +  L+++G            +  E L+S        +L+ + +        RD+ +    
Sbjct: 107 RARLAKRGQPLIVR----CGEMPEVLESLRATAGPLRLWAHEETGNQRTHERDQRVRDWA 162

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   +  +      +P   ++       +    ++ ++ + LV       P  A++    
Sbjct: 163 RAHEVPFTE-----VPSRGVVRGPHDRDEWADRWKASMDRPLV------HPPDALQPVDS 211

Query: 188 VTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVE--QRDIPAIQGTSQ 244
           V P  +P   D   +     +  IGE  A   L  F +E+   Y     R  PA    S+
Sbjct: 212 VAPGPMPSHADLGLRPSTAALQQIGEAEAHRTLDSFLRERGRNYRRAMSRPGPAQTECSR 271

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-------SWLNELIWREFYRHLMAF 297
           +S +L+ G +S R+    L+    +L       A        S+ + L W   +   +  
Sbjct: 272 ISVHLAYGTISLRRVVYELRRRQEELRGANGPDAAARRKALSSFDSRLHWHSHFTQKLED 331

Query: 298 YPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            P +   + +IP  + +  +  D  L  AW  G TGFP++DA MR L   GW++ R+R +
Sbjct: 332 APRI-ENESYIPAFDALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMRAM 390

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SF   D  +DWR     +   + D     +    Q    +G   +   RI+NP  QGK
Sbjct: 391 LCSFAAYDCWLDWRRFAPTYGGLMADYVPGIHYPQVQMQ--SGTTGINRVRIYNPVKQGK 448

Query: 417 RFDPQGTFIRHWLPELNNVP-TQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
             DP GTFIR W+PEL+++  T Y+HAP              +  +YP  +VDH  A HH
Sbjct: 449 EQDPDGTFIRRWVPELSHLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDAYHH 508

Query: 470 TLNQYYAAKKQ 480
             +  +  +++
Sbjct: 509 AQDAIHELRQR 519


>gi|261333249|emb|CBH16244.1| DNA repair enzyme, putative [Trypanosoma brucei gambiense DAL972]
          Length = 568

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 147/556 (26%), Positives = 213/556 (38%), Gaps = 105/556 (18%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQ---HGISARQSHFIYA 63
            +   R D R+TDN  L      +      VI +F   P Q               F+  
Sbjct: 23  AVFIFRRDFRVTDNTGLLLLIERAGKQSLPVIPLFFFNPRQCDPDKNPYFGKACFEFLCQ 82

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +     Q G      + S+  D +E + S      + +L +NR       +RD  L
Sbjct: 83  SLKHLDT--VQLGGRLVCLRGSD-CDCLEVVRSSG--YDIKQLGFNRDITPFARKRDLQL 137

Query: 124 EKRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           E+    R +    S  D  LLPP  + N   + Y+V++PF +A++Q          P   
Sbjct: 138 EEWCVKRGVRCVTSNMDYTLLPPDVVTNKNGKPYRVFSPFYRAVLQEHFSDIQAPNPKAT 197

Query: 182 IRLT--------------------GPVTPSNIPRFFDY-PFQAIDPMFP-----IGEQNA 215
                                     +         DY    A+   FP      G    
Sbjct: 198 TIGDIFTGSHVKEDVKATVDQARRSAMAADEFSSLVDYVDLAALPQTFPELVDRGGRSEG 257

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           L  L      K   Y   RD      T+ LSP+L  G +S R+           + +   
Sbjct: 258 LLRLASVASAK--NYSAIRDDIPGDKTTHLSPHLKFGTISIREAM--------QVALLHL 307

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMG--------------------KPFIPWTEKIE 315
               ++  +LIWREFY  L+   P + +G                    +PF+      +
Sbjct: 308 GKEHAFTRQLIWREFYSMLLYHNPRLALGQLKMDVALQGERQCRATLANEPFLEKYSNFQ 367

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  +     A+K G TGFP++DAA+R L   GW HNR RM+ A+FLVK L VDWR GE +
Sbjct: 368 WEWNDAEFTAFKSGATGFPLVDAAVRCLTKTGWCHNRCRMLIANFLVKVLFVDWREGERW 427

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           + +  +D D+A+N+GGW W++  G D+ PYFR FNP  Q  + DPQ  FI+ W+PEL NV
Sbjct: 428 YATVAVDYDVANNSGGWLWSSGQGADAQPYFRFFNPFRQSAQHDPQAVFIKQWVPELRNV 487

Query: 436 PTQYIHAPHSWLDKNDLSLN-----------------------------------YPLPI 460
             + IH       K     +                                   YP PI
Sbjct: 488 SVRTIHK-WDVFCKEGRPADEGTLGTVQGTVKESNGIKKEKTELPLGGSIVGGSAYPSPI 546

Query: 461 VDHKKACHHTLNQYYA 476
           VD K+     + +Y  
Sbjct: 547 VDLKQRTKWIVERYKK 562


>gi|297582490|ref|YP_003698270.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
 gi|297140947|gb|ADH97704.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
          Length = 512

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 122/471 (25%), Positives = 191/471 (40%), Gaps = 21/471 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++VWL+ DLRI D++ L  A    +  V+ +F+     W    +S R   F+  SL ++
Sbjct: 2   VNVVWLKRDLRIFDHRPLKEAAEQGE--VLPLFVWEASVWAHGDLSVRHRDFVLQSLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127
            + L Q+G        +   + I+ L          +LF + +        RD  +   +
Sbjct: 60  DRRLDQRGARLY----TAVGEVIDVLTRLEADLGPFQLFAHEENGTPLTFERDIAVRNWM 115

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + R           +  G  L       K Y  +  A +    +A       PA    G 
Sbjct: 116 KARGCTMKEWPHFGVTRG--LKSRDDFQKGYERYVNAPVVPAPEAVRGIRHAPAWLTKGA 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
             P  I      P  AI      GE+ A  +L+ F +E+   Y  +   P  + +  S+L
Sbjct: 174 GEPGGIA----LPGTAITRGQQGGERLAHGVLKGFLEERFKAYQVRISKPFASAESCSRL 229

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           SPYL+ G LS R  +        +L     K    ++L+ L W   +   +   P +   
Sbjct: 230 SPYLAWGNLSVRYTYQETVARLGELGSGFHKKQLSAFLSRLHWHCHFIQRLEDEPEIA-H 288

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           +   P  + +         Q W  G TG P+IDAAMR L+  GW++ R R +  SF+   
Sbjct: 289 RTMNPVFDTVRQTWSEEAYQRWLHGRTGIPLIDAAMRCLHETGWLNFRSRAMVISFVCNT 348

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L++DWR   E      LD +   +    Q     G       RI+NP  QG+  DP G F
Sbjct: 349 LMLDWRRPAEDLSRLFLDYEPGIHYSQVQMQ--AGTTGFNTIRIYNPVKQGQEHDPSGAF 406

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           +R ++PEL+ V   +IH P  W         YP+P+VD  KA        +
Sbjct: 407 VRRFVPELSAVSDAFIHEP--WKLPAGPPKGYPMPMVDVAKANGEARRILW 455


>gi|299821147|ref|ZP_07053035.1| deoxyribodipyrimidine photo-lyase [Listeria grayi DSM 20601]
 gi|299816812|gb|EFI84048.1| deoxyribodipyrimidine photo-lyase [Listeria grayi DSM 20601]
          Length = 457

 Score =  303 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 150/480 (31%), Positives = 236/480 (49%), Gaps = 42/480 (8%)

Query: 9   VHL-VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + L V L    R   N  L++    + +K+ A +   P      G S R+  F + ++ Q
Sbjct: 1   MQLGVLLNRVFRTKHNP-LFSYVEQNRSKIDACYFIIP-LEDLKGASERKKAFYFGTVNQ 58

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVRR 119
               L++  I         F  + E L  +C +Q++  +        ++  +Y+I   R 
Sbjct: 59  FLTELAKYEIR-------PFLVTYEKLPEFCQKQKIDTILMAGDIMSYHQEEYDIRHQR- 110

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
               EK     +  K+        P +   +  + YKV+TPF KA   ++      +  +
Sbjct: 111 ----EKLTAAGLEIKTIRVQHYFHPRATFKNGDEPYKVFTPFYKANRPHVTIQKPAAYSL 166

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              +L+             YP   +       E+ A+   + F  E +  Y   R++ A 
Sbjct: 167 K--QLSEITVTGTGHLDHSYPDDGLS------EEQAVANWQTFLNESIEAYETNREVLAE 218

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS YL+ G++  +Q +N+L ++        +    +++ EL++REFY  LM  YP
Sbjct: 219 IKTSWLSVYLAYGLIDIQQIFNQLLDQ----REANEKNYEAFIRELLFREFYYVLMVTYP 274

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   + F P   +IEW+ +    + WK G TG+PI+DAAM++LN  G+MHNR+RM+ + 
Sbjct: 275 EMAT-QSFKPNYRQIEWSLNKANFERWKNGETGYPIVDAAMQELNQTGYMHNRMRMVVSQ 333

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL KDL +DWR GE+YF SQL+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD
Sbjct: 334 FLTKDLFIDWRWGEDYFRSQLIDYDNASNVNGWQWSASTGTDAVPYFRMFNPIRQSERFD 393

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQ 473
             G +I+ +LP    VP  Y+H       K       +L   YP PIVDHK++    + +
Sbjct: 394 QDGAYIKQYLPIFKAVPAAYLHDTEKNKAKLAAECDIELGKTYPAPIVDHKQSRQAIMEK 453


>gi|71748528|ref|XP_823319.1| deoxyribodipyrimidine photolyase [Trypanosoma brucei TREU927]
 gi|70832987|gb|EAN78491.1| deoxyribodipyrimidine photolyase, putative [Trypanosoma brucei]
          Length = 568

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 147/556 (26%), Positives = 213/556 (38%), Gaps = 105/556 (18%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQ---HGISARQSHFIYA 63
            +   R D R+TDN  L      +      VI +F   P Q               F+  
Sbjct: 23  AVFIFRRDFRVTDNTGLLLLIERAGKQSLPVIPLFFFNPRQCDPDKNPYFGKACFEFLCQ 82

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +     Q G      + S+  D +E + S      + +L +NR       +RD  L
Sbjct: 83  SLKHLDT--VQLGGRLVCLRGSD-CDCLEVVRSSG--YDIKQLGFNRDITPFARKRDLQL 137

Query: 124 EKRLQHRVI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           E+    R +    S  D  LLPP  + N   + Y+V++PF +A++Q          P   
Sbjct: 138 EEWCVKRGVRCVTSNMDYTLLPPDVVTNKNGKPYRVFSPFYRAVLQEHFSDIQAPNPKAT 197

Query: 182 IRLT--------------------GPVTPSNIPRFFDY-PFQAIDPMFP-----IGEQNA 215
                                     +         DY    A+   FP      G    
Sbjct: 198 TIGDIFTGSHVKEDVKATVDQARRSAMAADEFSSLVDYVDLAALPQTFPELVDRGGRSEG 257

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           L  L      K   Y   RD      T+ LSP+L  G +S R+           + +   
Sbjct: 258 LLRLASVASAK--NYSAIRDDIPGDKTTHLSPHLKFGTISIREAM--------QVALLHL 307

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMG--------------------KPFIPWTEKIE 315
               ++  +LIWREFY  L+   P + +G                    +PF+      +
Sbjct: 308 GKEHAFTRQLIWREFYSMLLYHNPRLALGQLKMDVAPQGERQCRATLANEPFLEKYSNFQ 367

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  +     A+K G TGFP++DAA+R L   GW HNR RM+ A+FLVK L VDWR GE +
Sbjct: 368 WEWNDAEFTAFKSGATGFPLVDAAVRCLTKTGWCHNRCRMLIANFLVKVLFVDWREGERW 427

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           + +  +D D+A+N+GGW W++  G D+ PYFR FNP  Q  + DPQ  FI+ W+PEL NV
Sbjct: 428 YATVAVDYDVANNSGGWLWSSGQGADAQPYFRFFNPFRQSAQHDPQAVFIKQWVPELRNV 487

Query: 436 PTQYIHAPHSWLDKNDLSLN-----------------------------------YPLPI 460
             + IH       K     +                                   YP PI
Sbjct: 488 SVRTIHK-WDVFCKEGRPADQGTLGTVQGTVKESNGIKKEKTELPLGGSIVGGSAYPSPI 546

Query: 461 VDHKKACHHTLNQYYA 476
           VD K+     + +Y  
Sbjct: 547 VDLKQRTKWIVERYKK 562


>gi|312371404|gb|EFR19605.1| hypothetical protein AND_22153 [Anopheles darlingi]
          Length = 608

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 122/518 (23%), Positives = 196/518 (37%), Gaps = 49/518 (9%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAA----CHNSDAKV--IAVFIATPEQWRQHGISARQSH 59
           M+++ ++W R+ LR+ DN +L  A    C +S+  V    VFI   E      +   +  
Sbjct: 62  MTINNILWFRHGLRLHDNPSLLEALKSDCQSSNEPVKLFPVFIFDGESAGTRVVGYNRMK 121

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  SL  + +   + G      +     DS   L     +  + KL + +  E     R
Sbjct: 122 FLLESLADLDRQFRELGGQLLVFRG----DSETVLRRLFEELNIKKLCFEQDCEPIWRER 177

Query: 120 DKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL 177
           D+ + K  +   V C       L  P  ++          Y  F   +            
Sbjct: 178 DERVTKLCETMDVKCVENVSHTLWNPNEVIQTNGDIPPLTYQMFLHTVDIIGEPPRPVGA 237

Query: 178 PVPAIRLTGPVT-----------------PSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
           P       G +                  P      +D         +  GE  AL  L 
Sbjct: 238 PDFEFIEFGRIPAILASELKLYQQQHMPGPEEFGLTYDGNADIAFQKWIGGETRALESLG 297

Query: 221 KFCKE-----KVYYYVEQRDIPAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
              K+     +  YY+  +  P I G  + +S  L  G LS R  +  + + F  +    
Sbjct: 298 ARLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDLFAKVQASS 357

Query: 275 K---SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD-SHLLQAWKQGY 330
           +           +LIWRE++  +    P         P    I W +     L  WK+G 
Sbjct: 358 QFKCPIGQHITGQLIWREYFYTMSVRNPHYGEM-DRNPICLNIPWYEPVDDSLVRWKEGR 416

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNN 389
           TGFP+IDAAMRQL   GW+H+ LR ITA+FL +  L + W  G ++F+  LLD D +   
Sbjct: 417 TGFPLIDAAMRQLLAEGWLHHILRNITATFLTRGGLWISWEAGLQHFLKYLLDADWSVCA 476

Query: 390 GGWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
           G W W +S+  +  +   +   P     R DP G +++ ++PEL N P   +H P     
Sbjct: 477 GNWMWVSSSAFERLLDSSKCTCPVALAYRLDPTGDYVKRYVPELVNYPAHLVHEPWKATK 536

Query: 449 KNDLSLN------YPLPIVDHKKACHHTLNQYYAAKKQ 480
           +  L         YP P+VD         +     +++
Sbjct: 537 EEQLEYGCTIGQQYPAPMVDLNVVAKRNAHAMSKLREE 574


>gi|158301399|ref|XP_321104.4| AGAP001958-PA [Anopheles gambiae str. PEST]
 gi|205696380|sp|Q7PYI7|CRY1_ANOGA RecName: Full=Cryptochrome-1; Short=agCRY1
 gi|78191295|gb|ABB29886.1| cryptochrome 1 [Anopheles gambiae]
 gi|157012451|gb|EAA01270.4| AGAP001958-PA [Anopheles gambiae str. PEST]
          Length = 545

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 124/517 (23%), Positives = 202/517 (39%), Gaps = 48/517 (9%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNS-------DAKVIAVFIATPEQWRQHGISARQS 58
           M+++ ++W R+ LR+ DN +L  A  +          K+  +FI   E      +   + 
Sbjct: 1   MTINNILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRM 60

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  SL  + +     G      +     DS+  L     +  + KL Y +  E     
Sbjct: 61  KFLLESLADLDRQFRDLGGQLLVFRG----DSVTVLRRLFEELNIKKLCYEQDCEPIWKE 116

Query: 119 RDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRS 176
           RD  + K  +   V C       L  P  ++          Y  F   +           
Sbjct: 117 RDDAVAKLCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHTVNIIGDPPRPVG 176

Query: 177 LPVPAIRLTGPVT---------------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
            P       G V                P +    +D   +     +  GE  AL  L  
Sbjct: 177 APNFEYVEFGRVPALLASELKLCQQMPAPDDFGIHYDGNARIAFQKWIGGETRALEALGA 236

Query: 222 FCKE-----KVYYYVEQRDIPAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
             K+     +  YY+  +  P I G  + +S  L  G LS R  +  + + F  +    +
Sbjct: 237 RLKQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDLFAKVQSNSQ 296

Query: 276 ---SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYT 331
               G      +LIWRE++  +    P     +   P    I W K     L  WK+G T
Sbjct: 297 FKYPGGHHITGQLIWREYFYTMSVQNPHYGEME-RNPICLNIPWYKPEDDSLTRWKEGRT 355

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNG 390
           GFP+IDAAMRQL   GW+H+ LR ITA+FL +  L + W  G ++F+  LLD D +   G
Sbjct: 356 GFPMIDAAMRQLLAEGWLHHILRNITATFLTRGGLWLSWEEGLQHFLKYLLDADWSVCAG 415

Query: 391 GWQWAASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
            W W +S+  +  +   +   P    +R DP+G +++ +LPEL N P Q++H P     +
Sbjct: 416 NWMWVSSSAFERLLDSSKCTCPIALARRLDPKGDYVKRYLPELANYPAQFVHEPWKASRE 475

Query: 450 ND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                   +   YP P+VD         +   + +++
Sbjct: 476 QQIEYGCVIGEKYPAPMVDLAIVSKRNAHTMASLREK 512


>gi|255083581|ref|XP_002508365.1| predicted protein [Micromonas sp. RCC299]
 gi|226523642|gb|ACO69623.1| predicted protein [Micromonas sp. RCC299]
          Length = 488

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 125/498 (25%), Positives = 199/498 (39%), Gaps = 61/498 (12%)

Query: 11  LVWLRNDLRITDNKALYAA----CHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61
           +VW RNDLR+ DN A+  A       +   V+ +++  P       W        +  F 
Sbjct: 3   VVWFRNDLRLQDNYAVKQAESIATRTAGCDVLPLYVFDPRTFAPSSWGSPKCGGHRGRFQ 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+L ++++L   G           +   ++L      +       N +    E+R D 
Sbjct: 63  LESVLNLKRNLRAIGSDLLVAVGKPEEVIPKYLLDAPGAK-------NEEVCSEELRVDA 115

Query: 122 LLEKRLQHRVICKSF---DDSVLLPPGSILNH--ALQMYKVYTPFRKALIQNLVQADLRS 176
            ++  ++             S L     +     A  +  V+TPFR  +       +   
Sbjct: 116 KVKSAVKSAGNLNRLDKIWGSTLYHKDDLPFRSDASDLPDVFTPFRNKVESKSEPREPVP 175

Query: 177 LPVPAIRLTGPVTPSNI---PRFFDYPFQAIDPM--------------FPIGEQNALHIL 219
            P                  P   D PF   D                F  GE  AL  +
Sbjct: 176 PPAKGALPVPSDMTEAFAFEPTVADLPFANEDERAIAAAGAHPDGVLPFEGGESAALARV 235

Query: 220 RKFCKE--KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
           R +  E  K+  Y E R+ +     +S+L+P+L+ G +SPRQ    +++     +     
Sbjct: 236 RYYVWESEKIATYFETRNGMLGGDYSSKLAPWLAHGCVSPRQVVAEVRKFESQRV--ENK 293

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMG---------KPFIPWTEKIEWNKDSHLLQAWK 327
             +  + ELIWR+F++     + +                        W  D   L AWK
Sbjct: 294 STYWLIFELIWRDFFKFFALKHGNAIFFSEGTAGGKMGGAGYKGGAGPWRDDPAALAAWK 353

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           +G TG+P++DA MR+L   G+M NR R   AS+L  D  VDWR+G E+F ++LLD D ++
Sbjct: 354 EGKTGYPLVDANMRELAATGFMSNRGRQNVASWLALDAGVDWRLGAEWFENKLLDYDCSA 413

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N G W  AA      V     FN   Q K +DP+G +I++W+PEL  VP +YI  P    
Sbjct: 414 NWGNWVAAAGMTGGRVNK---FNIAKQTKDYDPEGEYIKYWVPELRKVPAKYIAEPRQMP 470

Query: 448 ------DKNDLSLNYPLP 459
                     + ++YP P
Sbjct: 471 GDVAQSAGCVIGVDYPAP 488


>gi|97047673|sp|Q84KJ5|CRYD_ARATH RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
           AltName: Full=Cryptochrome-3; Flags: Precursor
          Length = 569

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 118/460 (25%), Positives = 208/460 (45%), Gaps = 25/460 (5%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57
                V ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +
Sbjct: 80  RKGKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALR 138

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+   L+ ++K+L ++G+              E L S         +F +++    EV
Sbjct: 139 GGFLMECLVDLRKNLMKRGLNLLIRSGKPE----EILPSLAKDFGARTVFAHKETCSEEV 194

Query: 118 RRDKLLEKRLQHRV---ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
             ++L+ + L+        +    S +     +      +  VYT FRK++         
Sbjct: 195 DVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSS 254

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHI-LRKFCK-EKVY 228
             +P+            ++P       +  +      F  GE   +      F K + + 
Sbjct: 255 TRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLK 314

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y E R+ +     +++ SP+L+ G +SPR  +  ++    + +    +  +  L ELIW
Sbjct: 315 VYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV--ANNSTYWVLFELIW 372

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+++R L     +        P   + +W++D  L ++W+   TG+P+IDA M++L+T G
Sbjct: 373 RDYFRFLSIKCGNSLFHLGG-PRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTG 431

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W + A  GND     R
Sbjct: 432 FMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPRE-DR 490

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
            F+   Q + +DP+G ++  WL +L  +P +  H P   +
Sbjct: 491 YFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM 530


>gi|86131288|ref|ZP_01049887.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
           photolyase subfamily [Dokdonia donghaensis MED134]
 gi|85818699|gb|EAQ39859.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
           photolyase subfamily [Dokdonia donghaensis MED134]
          Length = 494

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 102/492 (20%), Positives = 185/492 (37%), Gaps = 30/492 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           + +   + + W + DLR+ DN+ L+ A  +S+  VI ++I  P        S R  +FI 
Sbjct: 2   SKSKSHITVHWFKRDLRLQDNENLWQALQHSE-PVILLYIFEPSLLDDEHYSERHFNFIK 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +Q  L          Q     + I           + +++ + +           
Sbjct: 61  ESLQDLQSRLENYDTKILVVQG----EVIPVFKKLQQHYTIKRVYSHVETG--------- 107

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           + K     +  K +  S  +     +N+ ++             +  +    R     + 
Sbjct: 108 IRKTYDRDIAFKVYQQSQDIRWIQFINNGVRRSLSNRVGWVQGWEWWMTEPQRIFVPQSG 167

Query: 183 RLTGPVTPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-- 237
            L          ++FD               G    L     F ++++  Y      P  
Sbjct: 168 DLVTKKEVEVFEQYFDCVSLQTPENTAFQKGGTTMGLRYYDSFLRDRIKNYNAHISKPLL 227

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A +  S+LSPY++ G LS R+ W R K+       K +     + + L W   +      
Sbjct: 228 ARKSCSRLSPYIAWGNLSVREVWQRAKKLRQASPYKRQ--IDGFTSRLRWSAHFIQKFE- 284

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                           ++   +    +AW++G TG+P++DA MR L   G+++ R+R +T
Sbjct: 285 MEDTMEFVSVNRGFHSLKKVSNPVYAKAWQEGKTGYPLVDACMRCLVETGYLNFRMRALT 344

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SF   +L   W+    +   Q LD +   +    Q     G   +   RI+NP      
Sbjct: 345 LSFFTHNLWQPWQDASAFLARQFLDFEPGIHYPQIQMQ--AGETGINMLRIYNPVKNSYE 402

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471
            DP+G FI+ W+PEL  VP  YIH P +            +  +YP PIV+ K+   +  
Sbjct: 403 HDPEGEFIKKWIPELREVPLSYIHEPWTMSLLEQQFCNTTIGKDYPAPIVNIKETQKYAT 462

Query: 472 NQYYAAKKQSLL 483
           +  +  K++  +
Sbjct: 463 DTMWKYKERPAV 474


>gi|119468403|ref|ZP_01611494.1| putative deoxyribodipyrimidine photolyase [Alteromonadales
           bacterium TW-7]
 gi|119447911|gb|EAW29176.1| putative deoxyribodipyrimidine photolyase [Alteromonadales
           bacterium TW-7]
          Length = 509

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 102/487 (20%), Positives = 194/487 (39%), Gaps = 32/487 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++VW + DLR++D++ L +A  ++    + ++   P        + R   F+Y S++ 
Sbjct: 4   KINIVWFKRDLRLSDHQPLKSAF-DTGLPTLLIYNFEPLLLEDAHYNERHWRFVYQSIVD 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126
           +   L++          +  ++    L     Q  ++ +F +++  +N    RD  ++  
Sbjct: 63  LNSQLARFNAKVY----TFNENMQTLLQKLNGQFEISYIFSHQEIGLNNTFERDLAIKAW 118

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             H  I          P G+++            ++K +   L   + +++    ++   
Sbjct: 119 CHHNHINWQES-----PTGAVIRGKKNRDNWNERWQKTMQAPLAIPNWKNVNSVKLKNYK 173

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--SQ 244
                      D  FQ        G  +A  +++ F  ++   Y +    P++  T  S+
Sbjct: 174 NPELPETYTQDDDNFQ------QGGPLHAREVMQSFFTQRGKGYQKGISSPSLSRTHCSR 227

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G +S RQ +    + +       K         +    ++ H M  + S C  
Sbjct: 228 LSPYLAWGNISLRQVYQTAIDAYHSNHPDKKGWKRPLAAFVSRLHWHCHFMQKFESECTM 287

Query: 305 --KPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
             K   P      +  D H    ++ W QG TG PIIDA MR L   G+++ R+R +  S
Sbjct: 288 EFKALNPGYHSFPYRTDKHVKHDIERWAQGQTGVPIIDACMRCLKATGYINFRMRAMLVS 347

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F+   L + W+       +  LD +   +    Q  AS     +   R +NP  Q +  D
Sbjct: 348 FVTHHLNISWQQASFPLANYFLDFEPGIHYPQIQMQASVT--GINTIRHYNPIKQSEDQD 405

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473
           P G FI+ W PEL  +P +Y+H P              L  +YP P++D   A      +
Sbjct: 406 PTGAFIKKWCPELEKLPIEYLHEPWEQTPMEALFNDFKLGEDYPEPMLDLTLASKDARER 465

Query: 474 YYAAKKQ 480
            +  + +
Sbjct: 466 LWQYRDR 472


>gi|54025035|ref|YP_119277.1| putative deoxyribodipyrimidine photolyase [Nocardia farcinica IFM
           10152]
 gi|54016543|dbj|BAD57913.1| putative deoxyribodipyrimidine photolyase [Nocardia farcinica IFM
           10152]
          Length = 436

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 137/458 (29%), Positives = 208/458 (45%), Gaps = 35/458 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +     DLR+ DN  L AA    DA V+ +F+              ++ F+ A++ ++
Sbjct: 2   TAIALFTRDLRVHDNPVLAAARDAGDA-VVPLFVID-AHLVPDRCPPNRARFLAAAVREL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
              L  +G      +    D+    +D    +     +            R   L +RL 
Sbjct: 60  DAELRTRGGRLIVRRGVVADEVARVVD----ETGARTVHLADDVSGYSAARADALRERLD 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHA--LQMYKVYTPFRKALIQNLVQADLRS---LPVPAI 182
            R +  +    S+    G +L  A     + V+TP+ +   +   +A L     L VP +
Sbjct: 116 RRGVRLEPHPASITTVDGDVLRPATGRDHFAVFTPYFRRWSEVPRRAPLPPPEDLEVPDL 175

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                 TP ++ R    P  ++      GE     +L  +    V  YVE  D  A   T
Sbjct: 176 PSAALPTPESLNRGEPSPQLSV-----GGETTGRALLDSWLAGPVDDYVETGDDLAADAT 230

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL  G LSP +  +R+            +G  ++  +L WR+F+  L+A  P+V 
Sbjct: 231 SHLSPYLHFGCLSPTELLHRV--------DVGSAGGQAFARQLAWRDFHHQLLAARPAVA 282

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               + P    I W  D   L AW+   TG+PI+DAA+RQL+T GW+ NR R+I A+FL 
Sbjct: 283 RH-DYRP--RPIRWRDDPQALAAWRSARTGYPIVDAALRQLHTEGWLPNRARLIAAAFLT 339

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K L + WR G  +F+  L+D DLA+N   WQW A TG+D+ P  R FNP  Q  R+DP G
Sbjct: 340 KTLGLHWRAGAGHFLHWLVDADLANNQLNWQWVAGTGSDTRP-NRGFNPLRQADRYDPDG 398

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
            ++R W+PEL ++    IH P          ++YP PI
Sbjct: 399 VYVRRWIPELADLDGGRIHRPWRA------EVDYPSPI 430


>gi|260220871|emb|CBA28870.1| hypothetical protein Csp_A09300 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 529

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 100/489 (20%), Positives = 186/489 (38%), Gaps = 29/489 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW + DLR  D+  L  A  +    V+ ++   P  W Q   S +  HF    L 
Sbjct: 16  MSYSVVWFKRDLRTHDHAPLKQALQSG--PVLCLYCIEPTLWAQPDASTQHYHFALECLR 73

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEK 125
            +   L + G+  Q        D+ E L     +     ++ + +   +    RD+ + +
Sbjct: 74  DLWVQLKELGLRLQL----VAGDAPEVLARLHAKAPFMAIYSHEETGNDASYARDRAVSR 129

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             + + +     D        ++   +     +  + + +  + V  D  SL   ++ L 
Sbjct: 130 WCKAQGV-----DWHQYKQFGVVRGVVNRDVWHLQWTEHMSGSQVSLD-GSLHAVSVELP 183

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
              +   +                 G   A  +L+ F  ++   Y      P  A +  S
Sbjct: 184 WDASKPPVATSLGLEGTDKPQRQVGGRARAEQVLQSFLTDRSARYRGGISSPLSASEACS 243

Query: 244 QLSPYLSIGVLSPRQCWNRLKE---EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           +LSPYL++G LS R+    ++E      +   + ++G  S+ + L W   +   +   P 
Sbjct: 244 RLSPYLALGCLSVREVVQAVQEVQGARGEGRKRHQAGLRSFTSRLHWHCHFIQKLESEPD 303

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +        +    E   +   L+    G TG+P++DA +  L   GW++ R+R +  S 
Sbjct: 304 IEFRNMHRGYDGLREAEHNPEHLKVLMAGRTGWPLVDACIAMLRETGWVNFRMRAMIVSI 363

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
               L + WR   E+   + LD +   +    Q    +G   +   RI+NP  Q +  DP
Sbjct: 364 AAYPLWLHWRPVGEWLAREFLDYEPGIHWSQLQMQ--SGTTGINIPRIYNPIKQARDQDP 421

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSW---------LDKNDLSLNYPLPIVDHKKACHHTL 471
            G F+R WLP +  VP  ++  P            L  +    + P P VD + A     
Sbjct: 422 DGQFVRRWLPAMRKVPDAWLFEPWRMPLGMQSRLGLTVDGPEPDIPQPSVDLEAATRAAK 481

Query: 472 NQYYAAKKQ 480
            + +  + Q
Sbjct: 482 KRLFELRAQ 490


>gi|83816774|ref|YP_446431.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM
           13855]
 gi|83758168|gb|ABC46281.1| deoxyribodipyrimidine photolyase, putative [Salinibacter ruber DSM
           13855]
          Length = 537

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 115/491 (23%), Positives = 202/491 (41%), Gaps = 39/491 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             +VW + DLR+ D++ L  A       V+ +++A P          R    I  +L+++
Sbjct: 49  TQIVWYKRDLRVGDHRPLAEAADRG--PVLPLYVAEPSIAAGADYHPRHWTLIREALIEL 106

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
           +  L+++G            +  E L+S        +L+ + +        RD+ +    
Sbjct: 107 RARLAKRGQPLVVR----CGEMPEVLESLRATAGPLRLWAHEETGNQRTHERDQRVRDWA 162

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   +  +      +P   ++       +    +  ++ + LV       P  A++    
Sbjct: 163 RAHEVPFTE-----VPSRGVVRGPHDRDEWADQWEASMDRPLV------HPPDALQPVDS 211

Query: 188 VTPSNIPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVE--QRDIPAIQGTSQ 244
           V P  +P   D   +     +  IGE  A   L  F +E+   Y     R  PA    S+
Sbjct: 212 VAPGPMPSHADLGLRPSTAALQQIGEAEAHRTLDSFLRERGRSYRRAMSRPGPAQTECSR 271

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-------SWLNELIWREFYRHLMAF 297
           +S +L+ G +S R+    L+    +L       A        S+ + L W   +   +  
Sbjct: 272 ISVHLAYGTISLRRVVYELRRRQEELRGANGPDAAARRKALSSFDSRLHWHSHFTQKLED 331

Query: 298 YPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            P +   + +IP  + +  +  D  L  AW  G TGFP++DA MR L   GW++ R+R +
Sbjct: 332 APRI-ENESYIPAFDALRADDWDPALYDAWLHGRTGFPMVDACMRHLRATGWLNFRMRAM 390

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SF   D  +DWR     +   + D     +    Q    +G   +   RI+NP  QGK
Sbjct: 391 LCSFAAYDCWLDWRRFAPTYGGLMADYVPGIHYPQVQMQ--SGTTGINRVRIYNPVKQGK 448

Query: 417 RFDPQGTFIRHWLPELNNVP-TQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
             DP GTFIR W+PEL+++  T Y+HAP              +  +YP  +VDH  A HH
Sbjct: 449 EQDPDGTFIRRWVPELSHLDTTAYVHAPWKMSPIEQQAAGCVIGKDYPERVVDHNDAYHH 508

Query: 470 TLNQYYAAKKQ 480
             +  +  +++
Sbjct: 509 AQDAIHELRQR 519


>gi|195107460|ref|XP_001998330.1| GI23904 [Drosophila mojavensis]
 gi|193914924|gb|EDW13791.1| GI23904 [Drosophila mojavensis]
          Length = 539

 Score =  302 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 122/515 (23%), Positives = 210/515 (40%), Gaps = 50/515 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN A+ AA  N D  V  I +FI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPAMLAALSNKDQGVALIPIFIFDGESAGTKNVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           + + L +    +G +            +           + K+   +  E     RD+ +
Sbjct: 67  IDRQLQEATEGRGGLLICE-----GQPVHIFRRLHEHVGLHKICVEQDCEPIWNERDEAV 121

Query: 124 EKRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYT------------PFRKALIQNLV 170
           +   +   I         L  P ++++    +  +              P R     N  
Sbjct: 122 KSLCRELGIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVQIIGLPPRPVRDPNFE 181

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226
                 L        G    +  P  F+     +  +    +  GE  AL +L +  K +
Sbjct: 182 GVKFVQLSPELRHDIGCFEMTPTPEHFNVYSDNMGYLAKINWVGGETQALLLLGERLKVE 241

Query: 227 VY-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275
            +     YY+  + +P I  T + +S +L  G LS R+ +  + + F ++ ++       
Sbjct: 242 QHAFERGYYLPNQAMPNILDTPKSMSAHLRFGCLSVRRFYWCMHDLFKNVQLRACVRGVQ 301

Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333
            SG      +LIWRE++  +    P     +        I W K D+  LQ W+ G TGF
Sbjct: 302 MSGGAHITGQLIWREYFYTMSVNNPQYDRMEG-NEICLSIPWAKPDAEQLQRWRLGQTGF 360

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           P+ID+AMRQL   GW+H+ LR   A+FL +  L  +W  G ++F+  LLD D +   G W
Sbjct: 361 PLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHFLKYLLDADWSVCAGNW 420

Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
            W +S+  + +     +  P    KR DP G +I+ ++PEL +VP +YIH P     +  
Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPNGQYIKQYVPELQHVPKEYIHEPWLMSAEEQ 480

Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                 + ++YP  I+D   A    +    A +  
Sbjct: 481 KRYECLIGVHYPDRIIDLSLASKRNMLAMKALRNS 515


>gi|149202359|ref|ZP_01879332.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
 gi|149144457|gb|EDM32488.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
          Length = 496

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 107/477 (22%), Positives = 182/477 (38%), Gaps = 25/477 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W + DLR+ D+ AL  A       ++ ++I  P  W +   S RQ  FI   L  +
Sbjct: 4   PVILWFKRDLRVQDHPALTHAARLG--PILPLYIVEPGLWAEPDASGRQYAFICECLESL 61

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127
           ++ L+  G+           D++  L+       V  L  + +   +    RD+ + +  
Sbjct: 62  REDLAGLGLTLVVR----VGDAVTVLEDLRAAHAVVHLVSHEETGNLWSFGRDRRVAEWA 117

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + + +           P S +   L     +   R  +++  V   ++ +   A+     
Sbjct: 118 RGQGVRWE------EMPQSGVVRRLGSRDAWQGARDRVMRAPVLGPVQGVRGLAVASDDL 171

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
             P+ +      P +        G    +  L+ F   +   Y      P    +  S++
Sbjct: 172 PAPATLGLKDACPLR-----QKGGRGAGMRALQSFLSTRGESYQRAMSSPLHGARACSRI 226

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L+ G LS R+                     S+   L WR+ +   +   P +   +
Sbjct: 227 SPHLAFGTLSLREAVQTGAMAPGGRGADWARSMRSFQARLAWRDHFMQKLEDEPEIER-R 285

Query: 306 PFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              P  E +   + D+  L AW  G TG P +DA MR L   GW++ R+R +  +     
Sbjct: 286 CLHPAYEGLRPREADALRLAAWSTGETGLPFVDACMRSLLATGWLNFRMRSMLMAVASYH 345

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR           D +   +    Q    +G   +   RI+NP  QG   DP G F
Sbjct: 346 LWLDWRSTGPVLAQAFTDYEPGIHWPQVQMQ--SGTTGMNTIRIYNPVKQGLDQDPTGEF 403

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            R WLPEL  VP  Y+  P  W +    L   YP PIVD  +A        +A ++ 
Sbjct: 404 TRRWLPELAQVPDAYLQRPWDWPEAERLLERGYPAPIVDPVEAARVAREAVWACRRA 460


>gi|225011849|ref|ZP_03702287.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-2A]
 gi|225004352|gb|EEG42324.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-2A]
          Length = 490

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 115/490 (23%), Positives = 193/490 (39%), Gaps = 27/490 (5%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           +     + +VWL+ DLR++D++AL+ A      + + +++           SAR   FI 
Sbjct: 2   SINKKELAVVWLKRDLRLSDHEALHNALAT-KKRCLLMYVFEDILLSDFHYSARHFDFIK 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDK 121
            S++++   L          + S     IE LD+   Q  +  L+ +++  I     RDK
Sbjct: 61  QSIVEMNNQLKLFNTRVLCLKGS----VIEALDTLSEQYSI-ALYSHQETGIGLTFERDK 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +++      +     +  L     +        K    +   + + L           +
Sbjct: 116 SVKQWADKNGV---HWNEFL--QQGVFRGLPNRKKWIHLWTAHMNRPLFNFSPEDDQFIS 170

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239
             L             +          P GEQ A   L  F + +   Y +    P  A 
Sbjct: 171 AELICEFEKE--FEVMELNTPKSQWFQPGGEQKASRYLNSFFERRYLNYQKHISKPDLAR 228

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +  S+LSPY++ G +S RQ   R +EE             S+ + L W+  +        
Sbjct: 229 KSCSRLSPYIAWGNISMRQVLQRTQEE--KERGNKSRALVSFGSRLRWQAHFIQKFEMEC 286

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           S    K        +   K    L+AW+ G+TG P++DAAMR L T G+++ R+R +  S
Sbjct: 287 S-MEYKSINKGYHALVKEKRVDYLKAWETGHTGIPMVDAAMRCLVTTGYLNFRMRALVVS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F++  L   W+    +   Q LD +   +    Q     G   +   RI+NP   G   D
Sbjct: 346 FVIHQLWQPWQSISGFLARQFLDFEPGIHFPQIQMQ--AGETGINTLRIYNPVKNGLEHD 403

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
           PQG F+  W+PEL  +P +++H P       S L    L  +YP PIVD           
Sbjct: 404 PQGKFVSKWIPELQKLPERFLHTPWEITPLESSLYDFKLGEDYPHPIVDIDTTRDKASQI 463

Query: 474 YYAAKKQSLL 483
            +  +K SL+
Sbjct: 464 LWNLQKNSLV 473


>gi|124107288|dbj|BAF45421.1| cryptochrome precursor [Dianemobius nigrofasciatus]
          Length = 539

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 113/514 (21%), Positives = 191/514 (37%), Gaps = 41/514 (7%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           ++     V +   R+ LR+ DN AL  A  + DA  + +FI   E      +   +  F+
Sbjct: 4   RSNVHKKVAVHRFRHGLRLHDNPALLDAVKDCDAF-LPIFIFDGESAGTKLVGYNRMKFL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +   L + G        +     +           + KL + +  E     RD 
Sbjct: 63  LESLQDIDSQLKKYGGNLYLFHGTP----LCVFQYISQTIGLHKLCFEQDCEPIWQHRDD 118

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQA------- 172
           L++K  +   I C       L  P  ++  +       +  F   +              
Sbjct: 119 LVKKFCKENGIKCIERVSHTLWNPHDVIKTNGGIPPLTFEMFVHTVSVIGPPPRPVEDVE 178

Query: 173 ---------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                     + S+P          TP +     +         +  GE  AL  L++  
Sbjct: 179 WSVVNFGVLPMSSIPSDIKVFKNFPTPEDFGISSEVGNMNRIIQWIGGESQALRHLQERL 238

Query: 224 KEKVYYYVEQRDIPAIQGTSQL------SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
           K +   + E   +P       L      S  L  G LS R+ +  +++ +  +     S 
Sbjct: 239 KVEENAFREGYCLPNQARPDLLGPPTSQSAALRFGCLSVRKFYWSIQDMYSSIC--GPSP 296

Query: 278 AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH-LLQAWKQGYTGFPII 336
             +  ++LIWRE++  +              P    I W  D       WK+G TG+P I
Sbjct: 297 NQNITSQLIWREYFYTMSVGNEYYAEM-DRNPICLNIPWKNDYGSDFNKWKEGKTGYPFI 355

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           DA MRQL   GW+H+  R   A FL + DL + W  G  +F+  LLD D +   G W W 
Sbjct: 356 DAIMRQLIQEGWIHHVARNAVACFLTRGDLWISWEEGLNFFLQYLLDADWSVCAGNWMWV 415

Query: 396 ASTGNDS-VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------D 448
           +S+  +  +       P   G+R DP G +I+ ++PEL N P +Y++ P           
Sbjct: 416 SSSAFEQLLDCSHCMCPVNYGRRLDPWGQYIKRYIPELKNYPVEYLYEPWKAPLHVQETA 475

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
              +  +YP  I+DH+ A     +     + + +
Sbjct: 476 GCIVGKDYPERIIDHQIASEKNRSYMDEIRNRLM 509


>gi|3986298|dbj|BAA35000.1| blue light photoreceptor [Drosophila melanogaster]
          Length = 542

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 115/515 (22%), Positives = 201/515 (39%), Gaps = 50/515 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL AA  + D    +I VFI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +   L      +G +  +       +          Q R+ ++   +  E     RD+ +
Sbjct: 67  IDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESI 121

Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
               +   +         L  P  ++     +  +        +Q +      +      
Sbjct: 122 RSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLE 181

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM----------------FPIGEQNALHILRKFCKEK 226
             T         R      Q   P                 +  GE  ALH+L +  K +
Sbjct: 182 DATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALHLLDERLKVE 241

Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275
            + +     +P             +S +L  G LS R+ +  + + F ++ ++       
Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301

Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333
            +G      +LIWRE++  +    P+    +        I W K +  LLQ+W+ G TGF
Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NEICLSIPWAKPNEDLLQSWRLGQTGF 360

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           P+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +   G W
Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNW 420

Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
            W +S+  + +     +  P    KR DP GT+I+ ++PEL NVP +++H P     +  
Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQ 480

Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                 + ++YP  I+D   A    +    + +  
Sbjct: 481 EQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515


>gi|156977867|ref|YP_001448773.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
 gi|156529461|gb|ABU74546.1| hypothetical protein VIBHAR_06659 [Vibrio harveyi ATCC BAA-1116]
          Length = 493

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 115/490 (23%), Positives = 202/490 (41%), Gaps = 40/490 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++LVWL+ DLR+TD+  L  A  + +  V+ ++I  P        S R   F++ S+  
Sbjct: 3   TINLVWLKRDLRLTDHLPLQHAVSSKNPTVL-LYIFEPMLLDDPHYSERHWRFVWQSIQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           +   L+Q            F ++ + L +   Q  +  +F +++  +N    RDK +   
Sbjct: 62  MNAQLAQHNQKVSVM----FGNARDCLSAIQNQFSIDAVFSHQEIGLNCTFERDKQVSAW 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-----LPVPA 181
           LQ + I            G+++  A   +     +   +   + + +L S     L V A
Sbjct: 118 LQAQDIPWHE-----FEHGAVVRGAKDRFGWDKHWDTVMRSPIEEVELESASLITLDVEA 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239
           +  T    PS +        + +  +   G   A   L  F + +   Y      P  + 
Sbjct: 173 LGFTFTPPPSWL--------EKVKGVQTGGSSIAWQTLEDFFQRRGRDYYRSISSPTASR 224

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              ++LSPYL+ G +S R+ +  L + +     +    A S  + L W   +        
Sbjct: 225 TACTRLSPYLAWGNISLREVYQYLLQHWQVTGFRRSLIALS--SRLHWHCHFMQKFESEC 282

Query: 300 SV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +   C+ + + P   +   N D   L AWK G TG P++DA MR L+  G+++ R+R +
Sbjct: 283 EMEFRCVNQAYDPLLRQAS-NNDPIRLDAWKAGTTGIPLVDACMRCLHHTGYINFRMRAM 341

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SFL   + +DWR G  +     LD +   +   +Q     G       RI+NPT Q +
Sbjct: 342 LVSFLTHHMNMDWRDGVTHLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQ 399

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACHHT 470
             D  G FI  W+PEL  VPT  +  P            L  +  Y  P +D + +    
Sbjct: 400 EHDTDGEFIHKWIPELAKVPTPLLFEPWKMTAMEVVMYQLEPDSKYLAPTIDVEASAKAA 459

Query: 471 LNQYYAAKKQ 480
             + +A +K+
Sbjct: 460 RERLWAWRKR 469


>gi|292656958|ref|YP_003536855.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
 gi|291372215|gb|ADE04442.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
          Length = 503

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 126/509 (24%), Positives = 200/509 (39%), Gaps = 62/509 (12%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS----------- 54
           +    L W R D R+  +     A      +V+ V+   P ++                 
Sbjct: 2   SEPTSLAWFRRDHRL--HDNAAFAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTG 59

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           A ++ F   SL  ++ SL  +G      +          L           +  + +   
Sbjct: 60  AHRARFRLESLADLRASLRDRGSDLVVREGRPE----SVLPEVAAAVDADFVTVHTRPTP 115

Query: 115 NEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------- 165
            E R +  +E  L+   +  + F    L     +      +   YT FRKA+        
Sbjct: 116 EESRVESAVETELRDGGVELRRFWGHTLTHLDGLPMALSDLPDTYTTFRKAVELAAEDAG 175

Query: 166 ------------------IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207
                                L +  +  LP  A         S++    D         
Sbjct: 176 TGDAAAGDEHASDGDPGGRDPLPEPTVPPLPDDAPDAGDLPAVSDLVGTADANADRAPDD 235

Query: 208 -----FPIGEQNALHILRKFCK--EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQC 259
                F  GE  AL  +  +    + +  Y E R+ +     +S+ SP+L+ G LSPR  
Sbjct: 236 RGVLPFDGGETAALDRVESYIWAGDHLREYKEARNGLLGADYSSKFSPWLNEGCLSPRYV 295

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
              + + + D  ++     +  + EL WR+F++   A + S C  +  I     I+W +D
Sbjct: 296 KAEV-DRYEDRRVE-NDSTYWLVFELRWRDFFQFQFAKHGSDCFHREGIRERTDIDWRRD 353

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
               + W  G TG P +DA MR+LN  G+M NR R   ASFL  DL +DWR G  YF ++
Sbjct: 354 DAQFERWAAGKTGIPFVDANMRELNATGYMSNRGRQNAASFLANDLRLDWRRGAAYFETR 413

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
           L+D D ASN G W + A  GNDS    R F+   Q  R+D    +++ WLPEL+ +P +Y
Sbjct: 414 LVDYDPASNYGNWAYIAGVGNDSRE--RSFDVRWQANRYDEDAEYVKTWLPELDALPAEY 471

Query: 440 IHAPHSWLDKN------DLSLNYPLPIVD 462
            H P             +L ++YP P+VD
Sbjct: 472 AHEPWKLSGAEQASYGVELGVDYPEPMVD 500


>gi|163801389|ref|ZP_02195288.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4]
 gi|159174878|gb|EDP59678.1| deoxyribodipyrimidine photolyase, putative [Vibrio sp. AND4]
          Length = 493

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 112/488 (22%), Positives = 201/488 (41%), Gaps = 36/488 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++L+WL+ DLR+TD+ AL  A  +S    + +++  P        S R   F++ SL  
Sbjct: 3   TINLLWLKRDLRLTDHLALQHAL-SSGHPTLLLYVFEPMLLEDPHYSERHWRFVWQSLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           +   L+  G            + ++ L +   Q  ++ +F +++  +N   +RDK +   
Sbjct: 62  MNAQLADYGQHILVLSG----NVVDCLSAIQTQFDISAVFSHQEIGLNCTFKRDKQVANW 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---R 183
           LQ + I            G+++  A         +   +   +   +L++  + ++    
Sbjct: 118 LQAQGIPWHE-----FEYGAVVRGAKDRLGWDKHWNAVMRAAIRNPELKNASLISLSNDT 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242
           L    TP           Q        G   A   L  F + +   Y  +   P+   T 
Sbjct: 173 LNCSFTPPPSWTVRTKGMQT------GGSSVAWQTLDDFFQRRGRDYYRRISSPSASRTA 226

Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            ++LSPYL+ G +S R+ +  L E +     +    A S  + L W   +         +
Sbjct: 227 CTRLSPYLAWGNISLREVYQYLLEHWQLAGFRRSLIALS--SRLHWHCHFIQKFESECKM 284

Query: 302 ---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
              C+ + +     +   ++D   L+AWK G TG P+IDA MR L+  G+++ R+R +  
Sbjct: 285 EFRCVNQAYEALLRQ-ACSQDQTALEAWKVGSTGIPLIDACMRCLHHTGYINFRMRAMLV 343

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL   + +DWR G  +     LD +   +   +Q     G       RI+NPT Q +  
Sbjct: 344 SFLTHHMNMDWRDGVAHLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEH 401

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACHHTLN 472
           D  G FI  W+PEL  VPT  +  P            +  +  Y  PI+D   +      
Sbjct: 402 DADGKFIHKWIPELAMVPTPLLFEPWKMTAMETVMYQIDPDSCYLAPIIDLDNSAKAARE 461

Query: 473 QYYAAKKQ 480
           + +A +K+
Sbjct: 462 RLWAWRKR 469


>gi|90577812|ref|ZP_01233623.1| deoxyribodipyrimidine photolyase, putative [Vibrio angustum S14]
 gi|90440898|gb|EAS66078.1| deoxyribodipyrimidine photolyase, putative [Vibrio angustum S14]
          Length = 491

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 118/491 (24%), Positives = 209/491 (42%), Gaps = 39/491 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
             +++VWL+ DLR+TD++AL  A  N+D  V+ ++I  P        S R   FI+ SL 
Sbjct: 2   KKINVVWLKRDLRLTDHQALSVAA-NNDYPVMLIYIMEPMLLSDPHYSERHWRFIWQSLE 60

Query: 67  QVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLE 124
            +   L+     VF +H      +++E LD       +  LF +++  +     RD  ++
Sbjct: 61  DMNHQLACVNSQVFIFH-----GNAVECLDKLMHHCPINALFSHQEIGLGCTFERDLNIK 115

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + ++    F        G+++  A         +       +++A + S+ +  + 
Sbjct: 116 AWCDKQQIQWHEFQQ------GAVIRGAKNRTNWDKHW-----NRVMRAPVFSVNLDKVN 164

Query: 184 LTGPVTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--A 238
             G          F  P    + +  M   G   AL  L  F   +   Y      P  +
Sbjct: 165 WVGTCPEQLAYMLFSPPESWRERVQGMQTGGSTLALQTLDDFFSRRGKEYYRSISSPTAS 224

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S+LSPYL+ G +S RQ + ++   +     +      ++ + L W   +       
Sbjct: 225 RTACSRLSPYLAWGNISLRQVYQQVLAHWNVKGFR--RSLIAFSSRLHWHCHFIQKFESE 282

Query: 299 PSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           P +   CM + +     +   +K+   L AWK+G TG P+IDA MR L   G+++ R+R 
Sbjct: 283 PDIEFYCMNRTYDRLLAE-SCSKNKMKLNAWKKGNTGIPLIDACMRCLYHTGYINFRMRS 341

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +  SFL   L +DWR G  +     LD +   +   +Q     G   +   RI+NPT Q 
Sbjct: 342 MLVSFLTHHLNIDWRDGVTHLAQLFLDFEPGIHYSQFQMQ--AGVTGINTIRIYNPTKQA 399

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLN----YPLPIVDHKKACHH 469
           +  DP G FI  W+PEL N+P   +  P +  +   +   L+    Y  PI+D +++  +
Sbjct: 400 QEHDPDGEFIHKWVPELANIPVPLLFEPWTLTELEVVMYQLDNNSCYLYPIIDLERSAKN 459

Query: 470 TLNQYYAAKKQ 480
              + +  K +
Sbjct: 460 ARERLWGWKAR 470


>gi|325180456|emb|CCA14862.1| cryptochrome putative [Albugo laibachii Nc14]
          Length = 639

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 126/555 (22%), Positives = 225/555 (40%), Gaps = 94/555 (16%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAK-------VIAVFIATPEQWRQHGISARQSHFIY 62
            ++W R DLR+ DN AL+ A    +++       +I ++I    + ++      +  F+ 
Sbjct: 60  AIMWFRRDLRLHDNHALHRALKFVESQNDTETVQLIPLYII--HRPKRLLCGVNRFQFLL 117

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            S+  + ++++ +G      +    D     L ++    ++T +F+++  E   + RD  
Sbjct: 118 ESVGTLAEAIAARGSRLIIARGEGIDVFRRILPAW----KITHIFFDQAIEPFAIARDHQ 173

Query: 123 LEKRLQH-RVICKSFDDSVLLPPGSILNHALQ---------------------------M 154
           + +      V  ++     L     ++                                 
Sbjct: 174 VRELAASLNVHVETTHGYTLYDQDKVIEKNGGKAPATYTAFLRTVATFPEPPKPLPVPLR 233

Query: 155 YKVYTPFRKALIQNLVQADLRSLPVPAIR-----------------LTGPVTPSNIPRFF 197
              +   R+ L + LV+   +                         + GP     +P   
Sbjct: 234 VSGWDDCREGLYECLVEFAQKGQDCLDEENQTTKTLSSFSQSWIDVIAGPEKLFRVPELS 293

Query: 198 DYPFQAI--DPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPAI----QGTSQLSPYL 249
           ++ F+          GE  AL IL+ +CK +     + + +  PA     + T+ LSPYL
Sbjct: 294 EFGFEKPGRHSFIYGGENIALKILQTYCKNEGQVVKFEKPKTSPAETCPSKSTTSLSPYL 353

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
             G +S R  ++R+++          +   S   +L+WREF+       P     +   P
Sbjct: 354 YFGCMSTRTFYHRVRDIQNRHAKASSAPPVSLDGQLLWREFFHCNGHANPQFDKMEG-NP 412

Query: 310 WTEKIEWN---------------KDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
               I+W                +D  L     +AWK+G TG+P IDA M QL   GWMH
Sbjct: 413 LCLYIDWRWHTLPSTKEEEDALPEDEKLAKAQFEAWKEGQTGYPWIDAIMIQLKEEGWMH 472

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL + W  G E F  +L+D D + N G W W +++   +  YFR++
Sbjct: 473 HLARHSVACFLTRGDLYISWVRGLEVFQERLIDHDWSINCGNWLWLSASAFFTA-YFRVY 531

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDH 463
           +P+  GK++D +G FIR ++P L  +P++YI+ P         L    +  +YP PIVDH
Sbjct: 532 SPSTFGKKWDAEGKFIRKYIPALAKMPSKYIYEPWKAPVTVQRLANCLVGKDYPFPIVDH 591

Query: 464 KKACHHTLNQYYAAK 478
           K A    +    A+ 
Sbjct: 592 KIAMRRCMAGMKASY 606


>gi|154343744|ref|XP_001567816.1| DNA repair enzyme [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 541

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 145/528 (27%), Positives = 215/528 (40%), Gaps = 68/528 (12%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQW---RQHGISARQSHFIY 62
           V L   R DLR+ DN  L A C  +  +   V+  F   P Q    R          F  
Sbjct: 27  VALFLFRRDLRVVDNTGLQALCDEAAHRSISVLTAFFFNPIQCDKERNPYFGDAFFQFFC 86

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL+ +  + +Q        + S+ +      DS      V  L +N  Y    + RD+L
Sbjct: 87  ESLVDLDGA-AQLSNGLVCLRGSDEECLRRIHDS---GYEVKVLGFNEDYTPFALSRDRL 142

Query: 123 LEKRL-QHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           L     +H ++C +   D  L P   +     Q Y V+TPF K  +          L   
Sbjct: 143 LRDYAEKHGIVCVTGPHDYSLRPLDDVAKGPDQPYSVFTPFYKKFMAEHAHRVAEPLWGN 202

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID--PMFP-----IGEQNALHILRKFCKEKVYYYVEQ 233
             ++   +          +           P      G    L  L   C E +  Y + 
Sbjct: 203 VKKVQSMLVSQPKKHLEHHLVNPARLYTHMPQVQDHGGRAEGLKRLA--CVETLRRYADV 260

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD  A   TS LSP++  G +S R+ W+   +               +  +L+WREFY  
Sbjct: 261 RDDIAGDKTSHLSPHMKCGTVSTREVWHASVQAL--------GTGHPFTRQLVWREFYAM 312

Query: 294 LMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
           L    P +  G+                    PF P  +   WN  +   +A+K+G TG 
Sbjct: 313 LAFTRPRLLQGQLNSFLGKKNIMKATQPKQNAPFQPSYDNYTWNWKAEHFEAFKEGRTGV 372

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           P++DAA+R L   GW HNR R++ ++F VK L +DWR  E +F +  +D D+A+NNGGW 
Sbjct: 373 PLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVANNNGGWL 432

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-- 451
           W++  G D+ PYFR FN   Q +RFDP   FI  W+PEL  VP   +H    +  K+   
Sbjct: 433 WSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAEVPPSVVHKWEEYCAKDRDK 492

Query: 452 -----------------LSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
                             + +YP+PIVD K A    + +Y    K  +
Sbjct: 493 ATTNYSKKRDDMGKRGAYTTSYPVPIVDTKAATKAIIEEYKKYGKSKM 540


>gi|88860348|ref|ZP_01134986.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           tunicata D2]
 gi|88817546|gb|EAR27363.1| putative deoxyribodipyrimidine photolyase [Pseudoalteromonas
           tunicata D2]
          Length = 500

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 104/485 (21%), Positives = 195/485 (40%), Gaps = 31/485 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++VW + DLR++D+  L  A  +S   V+ ++   P        +AR   F++ SL  
Sbjct: 4   PINIVWFKRDLRLSDHAPLQHAFASS-IPVLLIYNFEPLLLDDPHYTARHWRFVWQSLAD 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126
           + + L+     F+       +  I  L     Q  +  LF +++  +N    RDK +   
Sbjct: 63  LNQQLA----RFKTQIYIFSEPMIALLQRLGEQFEIRGLFSHQEIGLNNTFMRDKAVSAW 118

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                I      +     G+++            ++ +++  +   + + L    +    
Sbjct: 119 CHSNKIVWHETQT-----GAVVRGKKHRRDWQQLWQNSILSQVSTPNWQQLNTVYLTDYQ 173

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244
            +      +  D  FQ        G + A  ++  F  E+   Y +    P++     S+
Sbjct: 174 ELKLDERYQMVDENFQL------GGPKQARALIASFFVERGVGYQKGISSPSLSRLHCSR 227

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G +S RQ +++    +       +    ++++ L W   +         +   
Sbjct: 228 LSPYLAWGNVSLRQVYHQAIGHYEIAKRGWRKPLAAFISRLHWHCHFMQKFESESRIEF- 286

Query: 305 KPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           +P         +  D    H L  W+ G TG PIIDA MR L   G+++ R+R +  SF+
Sbjct: 287 EPLNMAYLHYPYRTDEQVEHDLALWQHGNTGIPIIDACMRCLKHTGYINFRMRAMLVSFV 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              L + W+          LD +   +    Q  AS     +   R++NP  Q +  DP 
Sbjct: 347 THHLNISWQQASMPLAQYFLDFEPGIHYPQIQMQASVT--GMNTIRLYNPIKQSQDQDPD 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FIR W PEL N+P++YIH P       +  +  DL  +Y   ++D   A      + +
Sbjct: 405 GVFIRTWCPELKNLPSEYIHQPWLQPPMEAIFNDFDLERDYHPSMIDLDIAAQIARERLW 464

Query: 476 AAKKQ 480
             +++
Sbjct: 465 GFRER 469


>gi|301617223|ref|XP_002938047.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Xenopus
           (Silurana) tropicalis]
          Length = 523

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 130/485 (26%), Positives = 214/485 (44%), Gaps = 35/485 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------S 54
           M A     V +  LRNDLR+ DN+ L+ A  N+D +++ ++   P  +            
Sbjct: 1   MAARAR--VIICLLRNDLRLHDNEVLHWAHRNAD-QIVPLYCFDPRHYGGTHYFNFPKTG 57

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  S+  ++ +L ++G      +    +     +        V+ +  + +  +
Sbjct: 58  PHRLKFLLESVQDLRNTLKERGSNLLLRRGKPEEIIAGLVKQLG---NVSAVTLHEEVTV 114

Query: 115 NEVRRDK-LLEKRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKAL-----IQ 167
             +     +L       +  ++F  S L     +   H   +  VYT FRKA      ++
Sbjct: 115 VPLYSYNPILWPPDWSGLRYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAAETQGKVR 174

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKE 225
           +  Q   R  P+P+    G V         D P       FP   GE  AL  L  +  E
Sbjct: 175 STFQMPDRLKPLPSGLEEGSVPTHQDFDQQD-PLTDPRSAFPCCGGETQALQRLHHYFWE 233

Query: 226 KV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
                 Y + R+ +  I  +++ +P+L++G +SPR  + ++++   +         +  +
Sbjct: 234 TNLVASYKDTRNGLIGIDYSTKFAPWLALGCISPRYIYEQIRKYEKERT--ANQSTYWVI 291

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            EL+WR+++R +   Y         +   + + W KD  L  AWK+G TG P +DA MR+
Sbjct: 292 FELLWRDYFRFVALKYGRRIFFLRGLQDKD-VPWKKDPKLFDAWKEGRTGVPFVDANMRE 350

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G+M NR R   ASFL KDL +DWR+G E+F   L+D D+ SN G W ++A  GND 
Sbjct: 351 LAMTGFMSNRGRQNVASFLTKDLXIDWRLGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDP 410

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456
               R FN   QG  +D  G +IR W+PEL  +     H P +    +       L   Y
Sbjct: 411 RE-NRKFNMIKQGLDYDAGGDYIRLWVPELQQIKGGDAHTPWALSTASLAHSNVSLGETY 469

Query: 457 PLPIV 461
           P PIV
Sbjct: 470 PYPIV 474


>gi|238828068|pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
          Length = 525

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 115/460 (25%), Positives = 205/460 (44%), Gaps = 26/460 (5%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------SARQ 57
                V ++W RNDLR+ DN ALY A  +SD  ++ V+   P  +            A +
Sbjct: 37  RKGKGVTILWFRNDLRVLDNDALYKAWSSSDT-ILPVYCLDPRLFHTTHFFNFPKTGALR 95

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F+   L+ ++K+L ++G+              E L S         +F +++    EV
Sbjct: 96  GGFLMECLVDLRKNLMKRGLNLLIRSGKPE----EILPSLAKDFGARTVFAHKETCSEEV 151

Query: 118 RRDKLLEKRLQHRV---ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
             ++L+ + L+        +    S +     +      +  VYT FRK++         
Sbjct: 152 DVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSS 211

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHI-LRKFCK-EKVY 228
             +P+            ++P       +  +      F  GE   +      F K + + 
Sbjct: 212 TRIPLSLGPTPSVDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLK 271

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y E R+ +     +++ SP+L+ G +SPR  +  ++    + +    +  +  L ELIW
Sbjct: 272 VYKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERV--ANNSTYWVLFELIW 329

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+++R L     +        P     +W++D  L ++W+   TG+P+IDA M++L+T G
Sbjct: 330 RDYFRFLSIKCGNSLFHLGG-PRNVNGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTG 388

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NR R I  SFLV+D+ +DWR+G E+F + LLD D  SN G W +    G +     R
Sbjct: 389 FMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTY--GAGVNDPREDR 446

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
            F+   Q + +DP+G ++  WL +L  +P +  H P   +
Sbjct: 447 YFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM 486


>gi|154250062|ref|YP_001410887.1| deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153998|gb|ABS61230.1| Deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 436

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 141/471 (29%), Positives = 217/471 (46%), Gaps = 46/471 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +   + DLR+ DNKAL+ A  NS +K+I +F+      ++     ++  F+   L  + 
Sbjct: 3   SMYLFKRDLRLDDNKALFEALKNS-SKIIPIFVFNKTILKEFNAYNQKVGFVVDVLKNIS 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K      I        +     E L+    + +   L+  + +      RD+ +EK  + 
Sbjct: 62  KK-----INLYVFHGEDD----EILEFLFSKYKPDALYTAQSFSWQGEERDRNIEKVCRK 112

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI----QNLVQADLRSLPVPAIRL 184
             V   +  D+ L     I        KV+TPF K  +        + ++  L    + L
Sbjct: 113 CNVKFHAVFDNYLADFRKIP-----YTKVFTPFYKKWLGYVESQEYEINIEELKRKVVAL 167

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 + + +F +   +     +  G +     LR +       Y EQRD P +  +S+
Sbjct: 168 DLDTIDTILVKFPELNQKNEVFTYDYGFE----RLRSY---DFAKYQEQRDFPGLDMSSR 220

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY+  GVLS R+  N   +   +           ++ +L WREF+ H+   +      
Sbjct: 221 LSPYIRFGVLSIRKIHNIASKVSPE-----------FVRQLAWREFWYHIKYNFSEFNK- 268

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             F+     + W  D  L + +    TG+PI+DA +RQL    WMHNR+R+I A+FLVKD
Sbjct: 269 LEFLEKRRNVRWRYDEKLFEKFVNAQTGYPIVDAGIRQLKQENWMHNRVRLIVANFLVKD 328

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           LL+DWRIGE++F   LLD D   N G WQW+AS G D  P  RIFNP IQ ++FDP   +
Sbjct: 329 LLIDWRIGEKFFREYLLDYDEVLNVGNWQWSASVGPDPKP-LRIFNPMIQSEKFDPNCEY 387

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           I+ ++PEL N     IH P       +  LNY  PIV+H +A   T   Y 
Sbjct: 388 IKKYIPELKNEENYKIHNPL------EYKLNYYEPIVNHYEAVQITKRLYK 432


>gi|322505598|emb|CAM40576.2| putative deoxyribodipyrimidine photolyase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 541

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 145/528 (27%), Positives = 215/528 (40%), Gaps = 68/528 (12%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQW---RQHGISARQSHFIY 62
           V L   R DLR+ DN  L A C  +  +   V+  F   P Q    R          F  
Sbjct: 27  VALFLFRRDLRVVDNTGLQALCDEAAHRSISVLTAFFFNPIQCDKERNPYFGDAFFQFFC 86

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL+ +  + +Q        + S+ +      DS      V  L +N  Y    + RD+L
Sbjct: 87  ESLVDLDGA-AQLSNGLVCLRGSDEECLRRIRDS---GYEVKVLGFNEDYTPFALSRDRL 142

Query: 123 LEKRL-QHRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           L     +H ++C +   D  L P   +     Q Y V+TPF K  +          L   
Sbjct: 143 LRDYAEKHGIVCVTGPHDYSLRPLDDVAKGPDQPYSVFTPFYKKFMAEHAHRVAEPLWGN 202

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID--PMFP-----IGEQNALHILRKFCKEKVYYYVEQ 233
             ++   +          +           P      G    L  L   C E +  Y + 
Sbjct: 203 VKKVQSMLVSQPKKHLEHHLVNPARLYTHMPQVQDHGGRAEGLKRLA--CVETLRRYADV 260

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD  A   TS LSP++  G +S R+ W+   +               +  +L+WREFY  
Sbjct: 261 RDDIAGDKTSHLSPHMKCGTVSTREVWHASVQAL--------GTGHPFTRQLVWREFYAM 312

Query: 294 LMAFYPSVCMGK--------------------PFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
           L    P +  G+                    PF P  +   WN  +   +A+K+G TG 
Sbjct: 313 LAFTRPRLLQGQLNSFLGKKNIMKATQPKQNAPFQPSYDNYTWNWKAEHFEAFKEGRTGV 372

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           P++DAA+R L   GW HNR R++ ++F VK L +DWR  E +F +  +D D+A+NNGGW 
Sbjct: 373 PLVDAAVRCLTATGWCHNRCRLVISNFAVKVLGIDWRECERWFATVAVDYDVANNNGGWL 432

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-- 451
           W++  G D+ PYFR FN   Q +RFDP   FI  W+PEL  VP   +H    +  K+   
Sbjct: 433 WSSGQGADAQPYFRTFNAFRQSERFDPDCKFIFQWVPELAEVPPSVVHKWEEYCAKDRDK 492

Query: 452 -----------------LSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
                             + +YP+PIVD K A    + +Y    K  +
Sbjct: 493 ATTNYSKKRDDMGKRGAYTTSYPVPIVDTKAATKAIIEEYKKYGKSKM 540


>gi|70727202|ref|YP_254118.1| hypothetical protein SH2203 [Staphylococcus haemolyticus JCSC1435]
 gi|68447928|dbj|BAE05512.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 457

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 136/479 (28%), Positives = 236/479 (49%), Gaps = 30/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    RI +N  L+   H +   +   ++  P++  +   +  ++++ +  + 
Sbjct: 1   MTIGVI-LNRVFRINNNP-LFEYIHQNKEDIEKCYLIIPQEIFEEDDTDMKANYYFGVMQ 58

Query: 67  QVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
                L Q  I   +  Y    +F D  + ++   +   +   ++   Y+I  ++     
Sbjct: 59  SFLNDLRQYDIEPFLLDYSDLGDFCDD-KSINEVIVAGDIMS-YHQESYDIRHLK----- 111

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +   +H +   +   +    P + +N   + YKV+T F KA    L + D  S       
Sbjct: 112 KAFNKHNITVTTVRANHYFKPSATMNKQGEPYKVFTSFYKAHRSKLRKHD--SYAYKLKD 169

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           L+     S      DY        F + E  A+     +  + +  Y   R+      TS
Sbjct: 170 LSDLFVKSQQKLNQDY------SKFGLSESKAIKKWNDYIDQDIQNYETNREYLPEVLTS 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G++  +Q   +L E + +     +     ++ EL++REFY  LM  YP+   
Sbjct: 224 QLSIILAYGIIDIKQIVTQLLERYEE----DEHNIEQFIRELMFREFYYVLMTQYPNTA- 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F      I+W  +    ++W +G+TGFPI+DAAM +LN  G+MHNR+RM+ + FL K
Sbjct: 279 HEAFNEKYRDIKWEYNKDEFKSWCEGHTGFPIVDAAMTELNQTGFMHNRMRMVVSQFLTK 338

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE+YF  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP+ Q +RFD    
Sbjct: 339 DLFIDWTWGEDYFRRKLIDFDSASNVHGWQWSASTGTDAVPYFRMFNPSRQSERFDKDAL 398

Query: 424 FIRHWLPELNNVPTQYIHAPHSW-----LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ ++P+LN+V  + +H P +       +   L  +YP P+VDHK+A  H ++ +   
Sbjct: 399 YIKTFIPQLNDVTPKLLHEPINHEAELEQEGIKLGQDYPKPLVDHKEARDHVMSVFKQI 457


>gi|308799831|ref|XP_003074697.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
 gi|116000867|emb|CAL50547.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
          Length = 787

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 130/506 (25%), Positives = 213/506 (42%), Gaps = 60/506 (11%)

Query: 2   KATTAM--SVHLVWLRNDLRITDNK----ALYAACHNSDAKVIAVFIATPEQWRQHG--- 52
           + T+ M  +  ++W RNDLR+ DN     A   A  +SD +V+ V++     ++      
Sbjct: 237 ETTSGMGRTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGL 296

Query: 53  --ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110
               A +  F    +  ++ SL   G         + D   E   +       T +    
Sbjct: 297 ARFGAGRGKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAEL--TLTGANDRTIILTQT 354

Query: 111 QYEINEVRRDKLLEKRLQHRV-------ICKSFDDSVLLP----PGSILNHALQMYKVYT 159
           +    E   D  +E+  + R          +    S L      P  + +    +  V+T
Sbjct: 355 EVTSEETEMDVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFT 414

Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPS-----NIPRFFDYPFQAIDPM------- 207
           PFR  +       D+  +P P     G V  S      +P+  D PF + +         
Sbjct: 415 PFRNKVESKCKVRDV--IPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRI 472

Query: 208 -----------FPIGEQNALHILRKFCKE--KVYYYVEQRD-IPAIQGTSQLSPYLSIGV 253
                      F  GE NAL  ++ +  E  ++  Y E R+ +     +++L+P+L++G 
Sbjct: 473 KDCLDERSVLDFKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGC 532

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           +SPR   + ++    + +       +  + ELIWR+F++     + +             
Sbjct: 533 VSPRHVVSEIRRYESERV--ENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRA 590

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
             W +D  +L+AWK G TG+P+IDA MR+L   G+M NR R   AS+L  D  +DWR G 
Sbjct: 591 -SWKRDEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGA 649

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           ++F   LLD D ASN G W  AA      +     FN   Q K +DP G +I+ W+ EL 
Sbjct: 650 DWFEHHLLDYDTASNWGNWCAAAGMTGGRINR---FNIAKQTKDYDPAGEYIKTWVKELA 706

Query: 434 NVPTQYIHAPHSWLD--KNDLSLNYP 457
            VP  YI  P+      ++ + LNYP
Sbjct: 707 EVPAAYIADPNQAPRELRDRIGLNYP 732


>gi|88802912|ref|ZP_01118439.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii
           23-P]
 gi|88781770|gb|EAR12948.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii
           23-P]
          Length = 486

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 112/487 (22%), Positives = 202/487 (41%), Gaps = 32/487 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++VWL+ DLR+ D+  L+ A        I ++   P        S R   F+Y SL  
Sbjct: 5   PINIVWLKRDLRLRDHVPLHTA-EQKGVPYIIIYFFEPSIIEYPDTSPRHLQFVYHSLKS 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           + K L+      +      + ++++  +       + +LF  ++  +    +RDK +   
Sbjct: 64  LDKGLANYNRKVEV----FYGEAMDIFNFLNTHYSIQQLFSYQESGLKKTWQRDKKIRAF 119

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                I              I+            +  A+   +++ +     +  +    
Sbjct: 120 CAINNIYWEESQR-----DGIIRGLKNRDTWNKRWHAAMHTPILKNNYSVSKLNTVEHAY 174

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
            +    + +  +YP        P GE+NA   L  F +++ + Y      P  +    S+
Sbjct: 175 VLPQELVAKLENYP----KHYQPAGEENAWRYLTSFTQKRGFNYHRHISKPTESRIACSR 230

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPY + G +S +Q ++     +V       +   ++   L    ++ H +  +   C  
Sbjct: 231 LSPYFAWGNISIKQVFH-----YVGKHPNGTANNRAFSGMLTRLHWHCHFIQKFEVECTY 285

Query: 305 KPFI--PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           +        E +   K++  L+AWK G TG+P+IDA MR +   GW++ R+R +  SFL 
Sbjct: 286 ETLCVNKGYELLAHKKNALFLKAWKTGQTGYPLIDACMRAVEQTGWINFRMRAMVVSFLT 345

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L  DWR G  +   Q LD +   +   +Q     G   +   R++NP    +  DPQG
Sbjct: 346 LNLDQDWRDGVYHLACQFLDYEPGIHYPQFQMQ--AGTTGINTVRLYNPVKNSEEHDPQG 403

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476
            FI+ W+PEL NVP  YIH P +            +  +YPLPIVD K +     ++ + 
Sbjct: 404 VFIKKWVPELENVPEAYIHEPWTMSLMEQAFCGVAIGEDYPLPIVDLKTSAKLARDKIWG 463

Query: 477 AKKQSLL 483
            KK   +
Sbjct: 464 HKKHPAV 470


>gi|134082999|emb|CAK42762.1| unnamed protein product [Aspergillus niger]
          Length = 567

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 122/510 (23%), Positives = 197/510 (38%), Gaps = 37/510 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   +A +V + W R DLR+ DN AL AA   + +  I +F   P    Q  +   +  F
Sbjct: 1   MPPQSAPTV-IFWHRTDLRLHDNPALQAALSLNPSTFIPIFTWDPHYAYQVRVGPNRWRF 59

Query: 61  IYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           +      + +S  +          +    +               T L +    +     
Sbjct: 60  LLECQNDLSQSYRKLNPKQKLWVVR----EAPQTVFPKLFKAWGATHLVFESDTDGYARE 115

Query: 119 RDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRS 176
           RD+ + K      +         L     ++     +         KA+ Q       R 
Sbjct: 116 RDETIRKLANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQINNGVPDRP 175

Query: 177 LPVP----------AIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCK 224
           +  P           +R   P    +IP   +          P   GE  AL +L  + +
Sbjct: 176 VDAPERIPDPLGEEKMRDISPKGDFSIPTLDELSIDPSQATSPHHGGESIALEMLTTYLQ 235

Query: 225 EKVYY---YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG- 277
           +   Y   + + +  PA    Q T+ LSP+L  G LS R+ W+ +++         K   
Sbjct: 236 QNEDYIATFEKPKTSPAAFHPQATTLLSPHLHFGSLSVRKFWHDVQDTLQQRESAHKPTS 295

Query: 278 --AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
               +   +L++RE +    A    V                +     + WK+G TGFP 
Sbjct: 296 DLPTNLPGQLLFREMFFAAQAALGPVYAQTRGNKIVRF----QAEVWFRRWKEGRTGFPW 351

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA MRQL   GW+H+  R   A FL +    V W  G E F   L+D + ASN G W W
Sbjct: 352 IDALMRQLKNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMW 411

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH-SWLDKNDLS 453
            + T   +  Y R ++P   GK++DP+G FIRH++PEL +   +YI+ P  + L+     
Sbjct: 412 LSCTAFFTQ-YNRCYSPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEPWKAPLEDQKRW 470

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
            +YP P+ D  +     + Q   A +  L+
Sbjct: 471 KSYPEPMFDFDERRQTCIAQMKEAYEVHLM 500


>gi|332671236|ref|YP_004454244.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484]
 gi|332340274|gb|AEE46857.1| DNA photolyase FAD-binding protein [Cellulomonas fimi ATCC 484]
          Length = 450

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 139/462 (30%), Positives = 204/462 (44%), Gaps = 34/462 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             + W R DLR+ DN AL AA   +   D  V+ +F+  P  W     +  +  ++  SL
Sbjct: 2   PTVHWFRRDLRLADNPALVAAVEAARRADDAVVPLFVVDPGLWTA--AAGPRVAYLARSL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L  + +V               + +   +     +      E    RRD  + +
Sbjct: 60  RALDAALDGRLVVRHGRPQD-------VVPAVAREVEAPTVHVTAATEPYGRRRDDAVAQ 112

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-LRSLPVPAIRL 184
            L   V   +      + PG +       Y+V+TPFR+A + +   A   R   VP   +
Sbjct: 113 ALGD-VPLVATGSPYAVAPGRLRTQQGSPYEVFTPFRRAWLDHGWSAPAPRPRSVPWADV 171

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            G   P       D P                     F  + +  Y E RD P + GTS 
Sbjct: 172 RGDGVPDEPATTVDLPAAGEAAARRRWAT--------FVADALADYDEDRDRPDLDGTSS 223

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +S  L  G L PR     L            +   ++ +EL WREF+  ++  +P     
Sbjct: 224 MSVPLKYGELHPRTLLADL------AGAGSSASVATYRSELAWREFHADVLWHHPDAAR- 276

Query: 305 KPFIPWTEKIEWNKDSHLLQAWK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           +       +  W        A+    +G TG+P++DA MRQL  IGWMHNR+RM+TASFL
Sbjct: 277 RSLRTVVPEDAWATGPAADDAFAAWAEGRTGYPLVDAGMRQLRAIGWMHNRVRMVTASFL 336

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VKDL   W+ G E+F++ L+DGD+  N   WQW A TG D+ PYFR+FNP +QG+RFDP 
Sbjct: 337 VKDLHQRWQRGAEHFLAWLVDGDVPQNQLNWQWVAGTGRDAAPYFRVFNPVLQGRRFDPD 396

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           GT++R W+PEL  +P   +H P                IVDH
Sbjct: 397 GTYVRQWVPELRGIPGGAVHEPWKLPAAAAPDYP--PRIVDH 436


>gi|325284597|ref|YP_004264060.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP]
 gi|324316086|gb|ADY27200.1| Uracil-DNA glycosylase [Deinococcus proteolyticus MRP]
          Length = 757

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 113/492 (22%), Positives = 190/492 (38%), Gaps = 37/492 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V +VW + DLR++D+ AL  A       V+ ++I  PEQ      +     ++   L  
Sbjct: 3   PVAVVWFKKDLRVSDHAALSRAAERG--PVLPLYIYEPEQLGHEEFAGHHLTYLNECLHD 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           +   L++ G          + +++E L++   +  V  L+ +++        RD  +   
Sbjct: 61  LSARLARLGAPLVIR----YGEAVEVLEALSREVTVGSLWAHQETGNGVSFARDLRVHAW 116

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + R I           P         + ++      A      +     LPVPA+R   
Sbjct: 117 ARARGI-----------PFYEPPQQGVIRRMVNRDGWA-DAWEERMSAPPLPVPALRGVA 164

Query: 187 --PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
             P +   +             +   GE  A  IL  F + +   Y+     P  A    
Sbjct: 165 GTPASLGVLDHAALRVPLGRRVIPQGGEAAAHDILESFLQRRGRDYMWAMSSPLTAEDAC 224

Query: 243 SQLSPYLSIGVLSPRQCW----NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           S+LS  L+ G +S R         L     +   + +    S+ + L WR+ +   +   
Sbjct: 225 SRLSAPLAFGTVSARTVLLATRQALARAVAEQDAQWERSLRSFESRLHWRDHFIQRLESE 284

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +        +    E + +    Q W++G TG+P+IDA MR L   GW++ R+R +  
Sbjct: 285 PRMEFENLNRAYDGLREPHWNEEYFQRWQEGQTGYPLIDATMRMLRATGWLNFRMRAMLV 344

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF  + L + WR    +   Q LD +   +    Q    +G   +   RI++PT Q +  
Sbjct: 345 SFAAQHLWLHWRRPGLFLARQWLDNEPGIHWS--QMQMQSGTVGINRSRIYSPTRQAREQ 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVD-HKKACHHTL 471
           DP G FIR W+PEL  VP  +I  P              L  +YP P+VD H  A     
Sbjct: 403 DPDGEFIRRWVPELAGVPAPHIWRPWELPPLAARGLGLRLGRDYPYPVVDEHAPARE-AH 461

Query: 472 NQYYAAKKQSLL 483
            +  A +   L 
Sbjct: 462 RRLQAVRDTPLF 473


>gi|269961220|ref|ZP_06175588.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834171|gb|EEZ88262.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 493

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 117/487 (24%), Positives = 201/487 (41%), Gaps = 32/487 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++LVWL+ DLR+TD++ L  A  +S+   + ++I  P        SAR   FI+ SL  
Sbjct: 3   TINLVWLKRDLRLTDHRPLQHAL-SSEHPTVLLYIVEPMLLDDPHYSARHWRFIWQSLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           + ++LS  G        S     I+ L +   Q  +  +F +++  ++    RD+ +   
Sbjct: 62  MNETLSALGHQVSVMSGST----IDCLSAIQNQFNINAIFSHQEIGLDCTFERDQQVSAW 117

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           LQ H +    F        G+++  A         +   +   +   DL S  + A+   
Sbjct: 118 LQAHSIPWHEF------EHGAVIRGAKDRLGWDKHWDTVMRAEIEDIDLESASLIALDAK 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                  +        + I  M   G   A   +  F + +   Y      P  +    +
Sbjct: 172 AL---GCLFTPPPSWLEKIKGMQTGGSSLAWQTMEDFFQRRGRDYYRSISSPTASRTACT 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 229 RLSPYLAWGNISLREVYQYLLQHWQVAGFRRSLIALS--SRLHWHCHFMQKFESECEMEF 286

Query: 304 ---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               K + P  ++     D+ LL AWK G TG P+IDA MR L+  G+++ R+R +  SF
Sbjct: 287 RYVNKAYDPLLQQASVR-DAALLDAWKSGTTGIPLIDACMRCLHHTGYINFRMRAMLVSF 345

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L   + +DWR G  +     LD +   +   +Q     G       RI+NPT Q +  D 
Sbjct: 346 LTHHMNMDWRDGVTHLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDA 403

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACHHTLNQY 474
            G FI  W+PEL  VPT  +  P            L  +  Y  P V+ + +      + 
Sbjct: 404 NGEFIHKWIPELAMVPTPLLFEPWKMTAMETVMYQLEPDSRYLAPFVNVEVSAKAARERL 463

Query: 475 YAAKKQS 481
           +A +K++
Sbjct: 464 WAWRKRT 470


>gi|260778007|ref|ZP_05886900.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606020|gb|EEX32305.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 487

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 113/485 (23%), Positives = 205/485 (42%), Gaps = 28/485 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
             ++LVWL+ DLR+TD+  L AA   SD   +  ++  P+       S R   F++ SL 
Sbjct: 2   KKINLVWLKRDLRLTDHAPLNAAL-CSDTPTLIFYLFEPDLLANAHYSERHWRFVWQSLS 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125
            +   L+          C    D + +L+    Q ++  L+ +++  ++   +RDK + K
Sbjct: 61  DINGHLAPFNAKVMVGGC----DVLSFLEKMAKQFQIEALYSHQETGLDVTFQRDKQVLK 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             + R I            G+++    +  K +    + +++  ++++  S       L 
Sbjct: 117 WCKDRQI-----SWYEFANGAVVRGCKER-KHWDKNWQRVMRAPIESNALSAGALLPNLN 170

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTS 243
                  +    +     +  +   G +     L  F   +V +Y      P+   +  S
Sbjct: 171 DDF--GIVFTPPEAWLSKVPGIQTGGVKVGWATLNDFFTRRVKHYYFSISSPSASREACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL+ G LS R+ +  L   + D  ++      ++ + L W   +         +  
Sbjct: 229 RLSPYLAWGNLSLREVYQFLLSHWNDKGMR--RSLIAFSSRLHWHCHFIQKFESEHQMEF 286

Query: 304 GKPFIPWTEKIEWN--KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +   I+ +   ++  L AWK+G TG+P++DA MR L   G+++ R+R +  SFL
Sbjct: 287 RCVNRGYESLIQHSAKTNNDHLTAWKEGNTGYPLVDACMRCLAHTGYLNFRMRAMLVSFL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              L  DWR G  +  S  LD +   +   +Q    +G   +   RI+NPT Q    DP 
Sbjct: 347 THHLAQDWRNGVAHLASLFLDFEPGIHYAQFQMQ--SGVTGINTIRIYNPTKQAIDHDPD 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQYY 475
           G FI+ W+PEL +VP   +  P        L  +      Y  PI+D   A     ++ +
Sbjct: 405 GVFIKKWVPELKDVPISLLFEPWKMSAMEALMYDIEGSSIYLNPIIDLDTAGREARDRLW 464

Query: 476 AAKKQ 480
           A KK+
Sbjct: 465 AWKKK 469


>gi|195389935|ref|XP_002053627.1| GJ24000 [Drosophila virilis]
 gi|194151713|gb|EDW67147.1| GJ24000 [Drosophila virilis]
          Length = 539

 Score =  299 bits (765), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 123/515 (23%), Positives = 214/515 (41%), Gaps = 50/515 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL AA  + D    +I +FI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPALLAALSDKDQGIALIPIFIFDGESAGTKSVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +   L +    +G +             +       + R+ K+   +  E     RD+  
Sbjct: 67  IDMQLQKATEGRGGLLMCQ-----GQPTQIFRRLHERVRLHKICVEQDCEPIWNERDEAT 121

Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYT------------PFRKALIQNLV 170
           +   +   +         L  P ++++    +  +              P R     N  
Sbjct: 122 KSLCRELNIEYVEKVSHTLWDPRTVIDTNGGIAPLTYQMFLHTVQIIGLPPRPIPDPNFE 181

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226
              +  LP    +  G +  +  P  F+     +  +    +  GE  AL +L +  K +
Sbjct: 182 GVSIAQLPQELRKDIGCLEKTPTPEDFNIYSDNMGYLAKMNWIGGETQALSLLGERLKVE 241

Query: 227 VY-----YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275
            +     YY+  + +P I  T + +S +L  G LS R+ +  + + F ++ ++       
Sbjct: 242 QHAFERGYYLPNQALPNILETPKSMSAHLRFGCLSVRRFYWSMHDLFKNVQMRACVRGVQ 301

Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333
            +G      +LIWRE++  +    P     +        I W+K D+  LQ W+ G TGF
Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPQYDRMEG-NEICLSIPWSKPDADQLQRWRLGQTGF 360

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           P+ID+AMRQL   GW+H+ LR   A+FL +  L  +W +G E+F+  LLD D +   G W
Sbjct: 361 PLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWELGLEHFLKYLLDADWSVCAGNW 420

Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
            W +S+  + +     +  P    KR DP G +I+ ++PEL NVP ++IH P     +  
Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPNGAYIKQYVPELKNVPKEFIHEPWRMSSEQQ 480

Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                 L  +YP  I+D   A         A +  
Sbjct: 481 ERYECLLGFHYPQRIIDLSLASKRNTMAMKALRNS 515


>gi|195569723|ref|XP_002102858.1| GD19278 [Drosophila simulans]
 gi|194198785|gb|EDX12361.1| GD19278 [Drosophila simulans]
          Length = 542

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 118/515 (22%), Positives = 203/515 (39%), Gaps = 50/515 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL AA  + D    +I VFI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +   L      +G +  +       +          Q R+ ++   +  E     RD+ +
Sbjct: 67  IDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDENI 121

Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYT------------PFRKALIQNLV 170
               +   +         L  P  ++     +  +              P R      L 
Sbjct: 122 RSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLD 181

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226
            A    L     R         +P  F+     +  +    +  GE  AL +L +  K +
Sbjct: 182 DATFVELEPEFCRSLKLFEQLPMPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVE 241

Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275
            + +     +P             +S +L  G LS R+ +  + + F ++ ++       
Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301

Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333
            +G      +LIWRE++  +    P+    +        I W K +  LLQ W+ G TGF
Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NEICLSIPWAKPNEDLLQRWRLGQTGF 360

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           P+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +   G W
Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNW 420

Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
            W +S+  + +     +  P    KR DP GT+I+ ++PEL NVP +Y+H P     +  
Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEYVHEPWRMSAEQQ 480

Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                 + ++YP  I+D   A    +    + +  
Sbjct: 481 EQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515


>gi|126735513|ref|ZP_01751258.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
 gi|126714700|gb|EBA11566.1| putative deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
          Length = 505

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 99/493 (20%), Positives = 180/493 (36%), Gaps = 32/493 (6%)

Query: 1   MKATTA--MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58
           M A  +    + +VW + DLR+ D+  L  A       V+ +++  PE W    +S RQ 
Sbjct: 1   MPAENSPPRPLTVVWFKRDLRLHDHAPLSQAAQAG--TVLPLYVIEPEYWALPDVSYRQW 58

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV- 117
            F   ++  +Q+ ++  G        +     ++ L           L  +++       
Sbjct: 59  RFWAGAIADLQQQIATLGGQLCLRSGAV----VDVLSQLRADYGPFDLVAHQETGNAWTF 114

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            RD  +           +      +  G+ L+      +        L       D   +
Sbjct: 115 ARDNAVRDWCHRNGADFTEHQQHGIWRGAALDRNRWAKRWDAMMAAPLTPIPSDIDWARV 174

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
              A+     +  ++           I  M   G   A   L  F  ++   Y +    P
Sbjct: 175 TSDALPDAAALGLTD---------DGIVAMQSPGLAAARATLDSFLHDRGAPYQKAMSSP 225

Query: 238 --AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN-------ELIWR 288
                  S+LSP+L  G +S R+ +         +   PK+   +W +        L W 
Sbjct: 226 VSGETACSRLSPHLMAGSISMREVYQATLARQSAVAALPKADRGTWPSAMKSFVGRLHWH 285

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
             +   +   P +        +        DS LL A+++G TG+P +DA MR L   GW
Sbjct: 286 CHFMQKLEAEPEIEWLPMARIYEGLRPTPTDSSLLSAFEEGRTGYPFVDACMRYLRATGW 345

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           ++ R+R +  SF   +L + W+           D +   +    Q    +G   +   RI
Sbjct: 346 INFRMRAMLMSFASYNLWLPWQQSGTVLARLFTDYEPGIHWPQSQMQ--SGETGINAVRI 403

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACH 468
           ++P  QG   DP G F R W+PEL ++  + +  P +    + L   YP  IVDH++   
Sbjct: 404 YSPVKQGYDQDPTGVFTRQWVPELAHLTGKALQDPWTL---DALPKGYPARIVDHQQTAR 460

Query: 469 HTLNQYYAAKKQS 481
               + Y  ++ +
Sbjct: 461 EAKQRIYGLRRTA 473


>gi|91223149|ref|ZP_01258415.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus
           12G01]
 gi|91191962|gb|EAS78225.1| deoxyribodipyrimidine photolyase, putative [Vibrio alginolyticus
           12G01]
          Length = 493

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/487 (23%), Positives = 198/487 (40%), Gaps = 32/487 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++++VWL+ DLR+TD++ L  A       V+ ++I  P        S R   F++ SL  
Sbjct: 3   TINVVWLKRDLRLTDHQPLTQALSTKHPTVL-LYIVEPLLLNNPHYSERHWRFVWQSLQD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           + ++L   G          FDD++    S   Q ++  +F +R+  +N    RD+ +   
Sbjct: 62  MDETLKAYGHRITVL----FDDALACFQSIQAQYQINAVFSHREIGLNCTFERDRQVAAW 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L  + I     D      G+++  A+        +   +  ++   +L++     +    
Sbjct: 118 LYEQNI-----DWFEFEHGAVIRGAINRQGWDKHWDSVMRASISPIELQT---DLLHSLD 169

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
                               M   G + A   L  F   +   Y      P  +    ++
Sbjct: 170 AEALGCSFSPPSSWLSKCKGMQTGGSRLAWKTLEDFFHRRGRDYYRSISSPTASRTACTR 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMAFYPS 300
           LSPYL+ G +S R+ +  L + +     +      S    W    I +    + M FY  
Sbjct: 230 LSPYLAWGNISLREVYQYLLKHWQVAGFRRSLIALSSRLHWHCHFIQKFESEYDMEFY-- 287

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
            C+ + + P  ++     D   L AWK G+TG P+IDA MR L+  G+++ R+R +  SF
Sbjct: 288 -CVNRAYEPLIKQSS-TFDEEKLAAWKSGHTGVPLIDACMRCLHHTGYINFRMRAMLVSF 345

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L   + +DWR+G  +     LD +   +   +Q     G       RI+NP  Q +  DP
Sbjct: 346 LTHHMNMDWRVGVTHLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPIKQAQEHDP 403

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQY 474
            GTFI  W+PEL  VP   +  P +      +         Y  PI+   KA      + 
Sbjct: 404 NGTFIYKWVPELQMVPPPLLFEPWTMTQMEAVMYQLQPDSRYLAPIIAPDKAAKAARERL 463

Query: 475 YAAKKQS 481
           +  +K++
Sbjct: 464 WTWRKRA 470


>gi|7648568|gb|AAF65584.1|AF139916_5 hypothetical DNA photolyase [Brevibacterium linens]
          Length = 487

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 144/509 (28%), Positives = 214/509 (42%), Gaps = 62/509 (12%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA---TPEQWRQHGISARQSH 59
           +T+   + LVW R+DLR+ D++AL AA   +D +VIAV+I      E      +      
Sbjct: 2   STSGEDLTLVWFRDDLRVADHEALTAA--RADGRVIAVWIRETRDEEGLGPRPLGGACRW 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           + + SL  + + LS  GI   +        + + +        VT + + R+Y       
Sbjct: 60  WAHESLTVLHEELSDLGIPLLF----AAGRAEKIIVQLASSLGVTAVRWTRRYASASRAL 115

Query: 120 DKLLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL- 177
           D  ++  L  +     S   ++L+ P +    +   YKV+TPF KA+    V   L    
Sbjct: 116 DGQIKTVLNDQGFTVHSHTGALLVEPWTAAPQSSDHYKVFTPFWKAVAGRDVGDVLPKPQ 175

Query: 178 ---PVPAIRLTGPVTPSNIPRFFDYPF---------------------QAIDPMFPIGEQ 213
              P+    L+       +                               I   +  G +
Sbjct: 176 AQSPLSQTLLSRAHECPAVMELDGLGLLDGTETGAGEAAAASGPRWWQDTIAGHWSPGLR 235

Query: 214 NALHILRKFCKEKVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
            A   L       +  Y   +D+P+    TS+LSP L  G LSPRQ     +        
Sbjct: 236 AAEDQLDD-LSAIIDGYTTSKDVPSDAASTSRLSPRLRHGELSPRQLLQAART----TSS 290

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
             +    +W+ +L WREF  HL   YP +    P  P      +  D   L  W+ G TG
Sbjct: 291 LTQDDRAAWIRQLYWREFSWHLTYHYPHI-DSAPIRPEFHNFPYEDDDDALTHWRAGTTG 349

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P+IDA M QL   GWMHNR+RM+TASFL K+LL  W  GE++F   L+D D A+N   W
Sbjct: 350 YPLIDAGMAQLWQTGWMHNRVRMVTASFLTKNLLQHWWFGEQWFWDTLVDADEANNPVSW 409

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL 452
           QW A +G D+ PYFR+FNP  Q +RFDP   +I  WLP         +            
Sbjct: 410 QWVAGSGADAAPYFRVFNPERQRERFDPDDAYIEDWLPYTPATAPPPL------------ 457

Query: 453 SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
                   VD +++    L+ Y   K +S
Sbjct: 458 --------VDLRQSRQAALSAYDHMKNRS 478


>gi|302915963|ref|XP_003051792.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732731|gb|EEU46079.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 639

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 127/556 (22%), Positives = 198/556 (35%), Gaps = 84/556 (15%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
                + W R DLR+ D+ AL AA     A +  +F   P    +      +  F+    
Sbjct: 2   GKPRVIYWFRTDLRLHDSPALKAALDLDPAVLWPIFTWDPHYVYRARGGLNRWQFLLDCQ 61

Query: 66  LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
             + KS+++          +    +             +VT L + +  +     RD ++
Sbjct: 62  NDLSKSITKLNPKSKLLLLR----EAPQTLFPKLFKAWKVTHLVFEKDTDSYARERDDVV 117

Query: 124 EKRLQHR---VICKS----FDDSVLLPP-------------------GSILNHALQMYKV 157
            +  +     VI ++    +D   ++                     G +         +
Sbjct: 118 TRAAKEAGVEVIVRTGRTLWDSDQIVEKHGGKPTMSITQLQQAGARLGEVRKPIPAPKHL 177

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIR---------LTGPVTPSNIPRFFDYPFQAIDPMF 208
             P    +     Q   +       R         + GP     I    +  F +     
Sbjct: 178 PDPGEMPVDFEQEQPKTKPDFNSEQRTEKDQTYTKIAGPNGDFAIETMEELGFPSATTPH 237

Query: 209 PIGEQNALHILRKFCKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRL 263
             GE  AL  L K   +K Y   + + +  PA    Q T+ LSP+L  G LS R+ + R+
Sbjct: 238 RGGETLALEALDKIIADKKYTAKFEKPKTSPARFEPQSTTLLSPFLHFGALSVREFYWRV 297

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN----KD 319
           +E          +   S + +L++R+ Y    A    V M     P    I W+    +D
Sbjct: 298 QEVVDAYGKGASTPPESLIGQLLFRDMYFAAQAALGDVFMQTVKNPHCRFIPWHLPSKRD 357

Query: 320 SH-----------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                                + WK G TGFP IDA MRQL   GW+H+  R   A FL 
Sbjct: 358 PKTGLVTGEYHVDSEEADIWFKRWKTGMTGFPWIDALMRQLKEEGWIHHLGRHAVACFLT 417

Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +    +DW  G E F   L+D + A N G WQW  S       YFR ++P   G+++D Q
Sbjct: 418 RGGCYIDWERGCEVFEEWLIDHEPACNAGNWQW-LSCTAFFSQYFRCYSPVSFGQKWDKQ 476

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKA 466
           G FIR ++PEL N+  +YI+ P      +                    YP P+ D  K 
Sbjct: 477 GDFIRRYVPELKNMDAKYIYEPWKAPLPDQKKAGVRVKGDGLNDVQEGTYPKPMFDFSKR 536

Query: 467 CHHTLNQYYAAKKQSL 482
               L     A K  L
Sbjct: 537 RDACLAAMKTAYKVGL 552


>gi|24648152|ref|NP_732407.1| cryptochrome [Drosophila melanogaster]
 gi|74960862|sp|O77059|CRY1_DROME RecName: Full=Cryptochrome-1; Short=DmCRY1; Short=dcry; AltName:
           Full=Blue light photoreceptor
 gi|3724370|dbj|BAA33787.1| blue-light receptor [Drosophila melanogaster]
 gi|3983154|gb|AAC83828.1| cryptochrome [Drosophila melanogaster]
 gi|7300494|gb|AAF55649.1| cryptochrome [Drosophila melanogaster]
 gi|15291339|gb|AAK92938.1| GH16672p [Drosophila melanogaster]
 gi|220945540|gb|ACL85313.1| cry-PA [synthetic construct]
 gi|220955344|gb|ACL90215.1| cry-PA [synthetic construct]
          Length = 542

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/515 (22%), Positives = 201/515 (39%), Gaps = 50/515 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL AA  + D    +I VFI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +   L      +G +  +       +          Q R+ ++   +  E     RD+ +
Sbjct: 67  IDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESI 121

Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
               +   +         L  P  ++     +  +        +Q +      +      
Sbjct: 122 RSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLE 181

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM----------------FPIGEQNALHILRKFCKEK 226
             T         R      Q   P                 +  GE  AL +L +  K +
Sbjct: 182 DATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVE 241

Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275
            + +     +P             +S +L  G LS R+ +  + + F ++ ++       
Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301

Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333
            +G      +LIWRE++  +    P+    +        I W K + +LLQ+W+ G TGF
Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NDICLSIPWAKPNENLLQSWRLGQTGF 360

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           P+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +   G W
Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNW 420

Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
            W +S+  + +     +  P    KR DP GT+I+ ++PEL NVP +++H P     +  
Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQ 480

Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                 + ++YP  I+D   A    +    + +  
Sbjct: 481 EQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515


>gi|195451205|ref|XP_002072813.1| GK13802 [Drosophila willistoni]
 gi|194168898|gb|EDW83799.1| GK13802 [Drosophila willistoni]
          Length = 543

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 118/514 (22%), Positives = 203/514 (39%), Gaps = 54/514 (10%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHF 60
           A      +++W R+ LR+ DN AL +A  + D    +I +FI   E      +   +  F
Sbjct: 2   ANVTCGANVIWFRHGLRLHDNPALLSALADKDQGIALIPIFIFDGESAGTKDVGYNRMRF 61

Query: 61  IYASLLQV----QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  SL  +    Q++   +G      Q        E       Q ++ K+ + +  E   
Sbjct: 62  LLDSLQDLDGKVQQATEGRG-RLHIFQG----QPKEIFRRLHQQLQLKKICFEQDCEPIW 116

Query: 117 VRRDKLLEKRLQH-RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADL 174
            +RD  ++   Q   +         L  P +++  +       Y  F   +   ++    
Sbjct: 117 SQRDASVKSLCQELGIEWVEMVSHTLWDPHTVIETNGGIPPLTYQMFLHTVE--IIGLPP 174

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------------FPIGEQNALH 217
           R    P     G V  S   +      Q                      +  GE  AL 
Sbjct: 175 RPTNDPNWNNVGFVEISQELQRELKYLQHFPTPEYFNIYCDNMGYLAKINWRGGETEALL 234

Query: 218 ILRKFCKEKVYYYVEQRDIPA------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
           +L++  K +   +     +P       +     +SP+L  G LS R+ +  + + F ++ 
Sbjct: 235 LLQERLKVEQSAFERGYYLPNQALPNILDTPKSMSPHLRFGCLSVRRFYWNVHDLFKNVQ 294

Query: 272 IKPK------SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQ 324
           ++        +G      +LIWRE++  +     +             I W+K     L+
Sbjct: 295 LQACVRGVQMTGGSHITGQLIWREYFYTMSVNNSNYDRMDG-NEICLNIPWSKPHEEKLE 353

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDG 383
            W+ G TGFP+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD 
Sbjct: 354 RWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGVQHFLKYLLDA 413

Query: 384 DLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
           D +   G W W +S+  + +     +       KR DP G +I+ ++PEL NVP +YIH 
Sbjct: 414 DWSVCAGNWMWVSSSAFERLLDSSLVTCSQAMAKRLDPDGLYIKQYVPELRNVPKEYIHE 473

Query: 443 PHSWLDKND------LSLNYPLPIVDHKKACHHT 470
           P     ++       + ++YP PI+D   A    
Sbjct: 474 PWRMSAEDQERYECLIGVHYPEPIIDLSLALKRN 507


>gi|119945274|ref|YP_942954.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
 gi|119863878|gb|ABM03355.1| Deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
          Length = 517

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 119/500 (23%), Positives = 199/500 (39%), Gaps = 37/500 (7%)

Query: 1   MKATTAMS-------VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI 53
           M A  A +       V++VWL+ DLR++D++ L  +  +     +  ++  P        
Sbjct: 1   MAANIAATNIRADSVVNIVWLKRDLRLSDHQPLSESIQSG--LTLLYYVFEPLLIADPHY 58

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
             R   FI+ S+  +   LS        +    F D++  L+    +  +T LF + +  
Sbjct: 59  DKRHWRFIWQSIEDINTQLSAFNAQIYVY----FGDAVAGLNEIQQRFNITGLFSHEEVG 114

Query: 114 INEV-RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
           +     RDK + K  + + I      S     G++             +RK +   L Q 
Sbjct: 115 LLSTFERDKAVNKWCKAQNIVWHESAS-----GAVTRGKKNRNNWDKDWRKIMKAELCQP 169

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
            L    + + +    +    +P  +  P    D M   GE  A  +L+ F   +   Y  
Sbjct: 170 ALSCNTLLSKQCLERLPQFILPVSWSTP---DDFMLKGGELWAQKMLQSFLNGRGKNYHF 226

Query: 233 QRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK----PKSGAFSWLNELI 286
               P  + +  S+LSPYL+ G +S RQ +  +  +      K      +    W    I
Sbjct: 227 DISKPQASRKSCSRLSPYLAWGNISLRQFYQIILMKRPQNGWKRPIDALASRLHWHCHFI 286

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            +    H M + P V        + +          L  WK   TG+P++DA M  L   
Sbjct: 287 QKFESEHQMQWRP-VNRAYSNFSYPDLHCGLSVETRLNKWKTAQTGYPLVDACMLCLIKT 345

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+++ R+R +  SFL   LL+DWR+G  Y     LD +   +   +Q    +G       
Sbjct: 346 GYINFRMRAMLVSFLCHHLLLDWRLGVSYLAKLFLDFEPGIHYPQFQMQ--SGVTGTNII 403

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPI 460
           R++NP  Q    D  G FIR WLP+L+ +P + IH P         L +  L   YPLPI
Sbjct: 404 RVYNPVKQSLEKDKDGLFIRTWLPQLSELPNEIIHTPWQLSPMEQQLYQCQLGETYPLPI 463

Query: 461 VDHKKACHHTLNQYYAAKKQ 480
           VD  +      +  +  +K+
Sbjct: 464 VDINETGKIARDLLWGFRKR 483


>gi|332668099|ref|YP_004450887.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336913|gb|AEE54014.1| DNA photolyase FAD-binding protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 501

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 111/482 (23%), Positives = 196/482 (40%), Gaps = 26/482 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ DLR+ D+  L AA  N     + +F   P          R   F++ SL  +
Sbjct: 6   INIVWLKRDLRLRDHDPLAAAIDNG-LPTLLLFCFEPSLMACPESDVRHWRFVFESLADL 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
           Q  L  +               +EW+  +    ++ +++ + +  I     RDK ++K  
Sbjct: 65  QNRLKIREKQLYAVHQEVI-TVLEWITDF---YQIQQVYSHEEVGIKITFDRDKAVKKWC 120

Query: 128 QHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + I  + F  + ++         L++ +  T    A   +L +    S+    +    
Sbjct: 121 TEQGIAYQEFPQNGIIRGRKHRQGWLKLLEKSTFKASATKVDLEKLQTLSIDPVLLEKFT 180

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQ 244
                ++ + +   FQ        GE  A    + F +E+   Y  Q   PA      S+
Sbjct: 181 TAPLPSVIQSYQEGFQR------GGETYAWRYFQSFLQERSKNYNRQLSKPAGSRTSCSR 234

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G +S R+    L         +       + + L WR  +   +     V + 
Sbjct: 235 LSPYLAFGCISAREVMQHLDAHLSQSADRWNLNN--FRSRLWWRSHFIQKLETDWRVEIA 292

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            P  P   +++   D    +AW QG TGFP++DA+MR L   GW++ R+R +  SF    
Sbjct: 293 -PINPVFVQLDRQMDGPWFEAWAQGKTGFPMVDASMRCLQATGWINFRMRAMLVSFATFV 351

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR    +     LD +   +    Q     G       R++NP+ Q  + DP G F
Sbjct: 352 LWLDWRPVATHLARLFLDFEPGIHYPQIQMQ--AGLTGYHTLRMYNPSTQVTKNDPDGIF 409

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           I+ W+PEL  VP+  +  P              +  +YP+P+VD  K      ++Y+  +
Sbjct: 410 IKKWVPELQAVPSTLLAEPWKMTPMEQKFYHCSIGSDYPVPLVDFDKVAAQNKDRYWQIR 469

Query: 479 KQ 480
           + 
Sbjct: 470 QS 471


>gi|195353691|ref|XP_002043337.1| GM26830 [Drosophila sechellia]
 gi|194127451|gb|EDW49494.1| GM26830 [Drosophila sechellia]
          Length = 542

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/515 (22%), Positives = 199/515 (38%), Gaps = 50/515 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL AA  + D    +I VFI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPALLAALADKDQGIAIIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +   L      +G +  +       +          Q R+ ++   +  E     RD+ +
Sbjct: 67  IDDQLQAATDGRGRLLVFE-----GEPAYIFRRLHEQLRLHRICIEQDCEPIWNERDESI 121

Query: 124 EKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
               +   +         L  P  ++     +  +        +Q +      +      
Sbjct: 122 RSLCRELSIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLD 181

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM----------------FPIGEQNALHILRKFCKEK 226
             T         R      Q   P                 +  GE  AL +L +  K +
Sbjct: 182 DATFVELDPEFCRSLKLFDQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVE 241

Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275
            + +     +P             +S +L  G LS R+ +  + + F ++ ++       
Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301

Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333
            +G      +LIWRE++  +    P+    +        I W K +  LLQ W+ G TGF
Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NEICLSIPWAKPNEDLLQRWRLGQTGF 360

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           P+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +   G W
Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNW 420

Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
            W +S+  + +     +  P    KR DP GT+I+ ++PEL NVP +++H P     +  
Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRMSAEQQ 480

Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                 + ++YP  I+D   A    +    + +  
Sbjct: 481 EQYECLIGVHYPERIIDLSMAVKRNMLAMKSLRNS 515


>gi|315658957|ref|ZP_07911824.1| deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
           M23590]
 gi|315496081|gb|EFU84409.1| deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
           M23590]
          Length = 460

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 146/478 (30%), Positives = 227/478 (47%), Gaps = 30/478 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LV L    R+  N   +   +++ A +   +   P +  +   +  +  F + ++ 
Sbjct: 1   MNIALV-LNRVFRLEQNPM-FEYLNHNQADIERCYCVIPLELFE-DEAPLKRTFYHQAVT 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LE 124
           Q  + L + GI         F        S+C Q+ +  + +             +  ++
Sbjct: 58  QFIQQLIEIGI-------KPFVFPYTAFASFCEQKEIDTVVFPSDIMSFHNCECDILHVK 110

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             +Q + I   +   +    P   LN   Q YKV+T F KA    L Q       +  ++
Sbjct: 111 SEIQAQKIAIVNVRANHYFQPSRTLNQQGQPYKVFTSFYKANRPQLRQRRRYPYQLDKLK 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                    I    +   + +     IGE  +    + F    + +Y   R+      TS
Sbjct: 171 -------QQIINADNTSVKKVTEHINIGEAKSQQQWQAFLNNNIEHYQYYREYLPETLTS 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G L   +   +L E + D     +    +++ EL++REFY  LM +YP    
Sbjct: 224 QLSIALAYGFLDINEIMRQLLERYHD----NEENYEAFIRELLFREFYYVLMVYYPETA- 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    + I W+++     AWK+G TG+PIIDAAM +L   G+MHNR+RM+TA FL K
Sbjct: 279 HTSFNDKYKHITWSENQSDFNAWKEGRTGYPIIDAAMHELKQTGFMHNRMRMVTAQFLTK 338

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L +DW  GE YF + L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +G 
Sbjct: 339 ELFIDWTWGENYFKNLLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDKKGL 398

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +I+ +LP+  NVP  Y+H P            DL  NYP PIVDH++A  H + Q+  
Sbjct: 399 YIKTYLPQWANVPASYVHEPWKHAQTLKDYGIDLGTNYPWPIVDHQQARAHVMEQFKK 456


>gi|255574121|ref|XP_002527976.1| DNA photolyase, putative [Ricinus communis]
 gi|223532602|gb|EEF34388.1| DNA photolyase, putative [Ricinus communis]
          Length = 578

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 131/515 (25%), Positives = 220/515 (42%), Gaps = 68/515 (13%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI------S 54
           M         +VW RNDLRI DN+ L+ A  +S+A V+ V+   P  ++           
Sbjct: 49  MATRHGKGTAIVWFRNDLRILDNEVLFKAWLSSEA-VLPVYCVDPRLFQTTHYFGFPKTG 107

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           A ++ FI   L  ++K+L ++G+              E L S         ++ +++   
Sbjct: 108 ALRAQFIIECLADLKKNLMKRGLNLLIRHGKPE----EVLPSLAQAFAAHTVYAHKETCS 163

Query: 115 NEVRRDKLLEKRLQHRVIC----------------KSFDDSVLLPPGSILNHALQMYKVY 158
            EV  +KL+ K L HRV                  +    S +     +  +   +   +
Sbjct: 164 EEVHVEKLMNKAL-HRVKLSPPPDSKASANTTPKLQLIWGSTMYHIDDLPFNITSLPDDF 222

Query: 159 TPFRKALI------------------QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200
             FRKA I                  ++ ++      P P +   G V   +     +  
Sbjct: 223 FDFRKARIIPFFMLLMLQIVEPKCAVRSCIKIPKSLAPPPTVEDWGCVPSIHQLGLEEQK 282

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYY---------------YVEQRD-IPAIQGTSQ 244
            + +   F  GE  A+  + ++  +K                  Y E R+ +  +  +++
Sbjct: 283 ARGMR--FLGGESAAISRVYEYLWKKASGICLLNLHCCSDLAKTYKETRNGLLGLDYSTK 340

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
            SP+L+ G LSPR  +  +K    + L    +    ++  L+WR+ +R       +    
Sbjct: 341 FSPWLAQGSLSPRFIYEEVKRYERERLANDSTHRVLFV--LLWRDHFRFFSIKCGNSIFH 398

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
               P      W++D  L ++W+ G TG+P+IDA M++L+  G+M NR RMI  SFLV+D
Sbjct: 399 LGG-PRNVAQRWSQDQRLFESWRDGRTGYPLIDANMKELSATGFMSNRGRMIVCSFLVRD 457

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           + VDWR+G E+F + LLD D  SN G W + A  GND+    R F+   Q + FDP+G +
Sbjct: 458 MGVDWRMGAEWFETCLLDYDPCSNYGNWTYGAGIGNDNRE-DRYFSIPKQAQSFDPEGEY 516

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
           + +WLPEL  +     H P     +  + L Y  P
Sbjct: 517 VAYWLPELRKLQKDKRHFPGMSYVERIVPLKYGNP 551


>gi|91217399|ref|ZP_01254359.1| putative deoxyribodipyrimidine photolyase [Psychroflexus torquis
           ATCC 700755]
 gi|91184507|gb|EAS70890.1| putative deoxyribodipyrimidine photolyase [Psychroflexus torquis
           ATCC 700755]
          Length = 485

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 109/484 (22%), Positives = 196/484 (40%), Gaps = 38/484 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++VW + DLR+ D+  L+ A       V+ ++I  P   +    S R   FI  SL  +
Sbjct: 2   VNVVWFKRDLRLQDHAPLHLALQKKQ-PVLLLYIFEPILLKDSHYSERHFRFIKESLRDI 60

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
           QK L      +         ++ +   +   Q  +  +F +++  +    +RDK L+   
Sbjct: 61  QKQLEA----YHTQVLIVEGNAEDVFKTIHQQLTIKSVFSHQETGLQITFKRDKNLKLLF 116

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--- 183
           +   +  K F ++ ++         LQ  K +    +  +   +     SL     +   
Sbjct: 117 KSLSIQWKEFVNNGVI-------RGLQNRKTWINLWENFMSQDLLYFSASLGQFENQNQI 169

Query: 184 --LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AI 239
             L G ++P ++    +  FQ        G   AL  L+ F +++   Y +    P  A 
Sbjct: 170 DSLKGQLSPVDLSTERNLNFQ------KGGRPTALRYLKGFLQDRYPNYQKNISKPLLAR 223

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           +  S+LSPY++ GVLS R+      E  +    K K     + + L W+  +        
Sbjct: 224 KSCSRLSPYIAWGVLSMREVIQASIE--IQDKTKHKQALSQFQSRLRWQAHFIQKFEMEY 281

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                + F      +E   +  L +AWK+G TGFP++DA+M+ L   G+++ R+R +  S
Sbjct: 282 H-AEFQNFNSAFNVLEKPYNKALAEAWKKGETGFPLVDASMKCLIQTGYLNFRMRALLVS 340

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L   W+    +  S  LD +   +    Q     G   +   RI+NP     + D
Sbjct: 341 FFTHLLWQTWQEASSHLASLFLDFEPGIHYPQLQMQ--AGTTGIHTLRIYNPVKNSYKHD 398

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473
             G FI  +LP L  +P +++H P             +L  +YP PI++      H  + 
Sbjct: 399 LDGEFILTYLPSLKGIPLEFVHEPWKLTAMEQSMYNFELGKDYPRPIIEMATTRQHASDS 458

Query: 474 YYAA 477
            +  
Sbjct: 459 IWKI 462


>gi|194744725|ref|XP_001954843.1| GF16541 [Drosophila ananassae]
 gi|190627880|gb|EDV43404.1| GF16541 [Drosophila ananassae]
          Length = 542

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 123/509 (24%), Positives = 207/509 (40%), Gaps = 42/509 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL AA    D    ++ VFI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPALLAALAEKDQGIALLPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   +       +                   Q R+ K+   +  E     RD+ +    
Sbjct: 67  IDDQIQTL-TDGRGRLLLFEGKPEHIFRRLHEQLRLHKICLEQDCEPIWNHRDETIRSLC 125

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYT------------PFRKALIQNLVQADL 174
               +         L  P S++     +  +              P R      L  A  
Sbjct: 126 HELGIEFVEKVSHTLWNPQSVIETNGGIPPLTYQMFLHTVQILGLPPRPVNDARLEDASF 185

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVY-- 228
             +    +R  G +     P  F+     +  +    +  GE+ AL +L +  K + +  
Sbjct: 186 VQMDPELLRNLGYLEQIPTPEHFNVYGDNMGFLSKIRWRGGERQALLLLDERLKVEQHAF 245

Query: 229 ---YYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK------SGA 278
              YY+  + +P IQ T + +SP+L  G LS R+ +  + + F ++ ++        +G 
Sbjct: 246 EKGYYMPNQALPNIQETPKSMSPHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGG 305

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIID 337
                +LIWRE++  +    P+             I W  +D   LQ W+ G TGFP+ID
Sbjct: 306 AHITGQLIWREYFYTMSVNNPNYDRMDG-NEICLSIPWAKRDETQLQKWRLGQTGFPLID 364

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           AAMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +   G W W +
Sbjct: 365 AAMRQLLAEGWLHHVLRNTVATFLTRGGLWQSWEHGVQHFLRYLLDADWSVCAGNWMWVS 424

Query: 397 STGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND---- 451
           S+  + +     +  P    KR DP G +IR ++PEL NVP ++IH P     +      
Sbjct: 425 SSAFERLLDSSLVTCPVALAKRLDPDGAYIRQYVPELKNVPREFIHEPWRMNLQQQEQYE 484

Query: 452 --LSLNYPLPIVDHKKACHHTLNQYYAAK 478
             + ++YP  ++D  KA    +      +
Sbjct: 485 CLIGVHYPDRLIDLSKAVKGNMLAMKTLR 513


>gi|224121408|ref|XP_002330820.1| predicted protein [Populus trichocarpa]
 gi|222872622|gb|EEF09753.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 129/535 (24%), Positives = 218/535 (40%), Gaps = 72/535 (13%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-------HGI 53
           M         +VW RNDLR+ DN+ L+ A  NS++ V+ V+   P  ++           
Sbjct: 28  MVKRNGKGAAIVWFRNDLRVLDNEVLFKAWVNSES-VLPVYCVDPRLFQASTCYFGFPKT 86

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
              +  FI   L+ ++K+L ++G+              E + +         ++  ++  
Sbjct: 87  GGLRGQFIVECLVDLKKNLMKRGLNLLIRHGKPE----EIIPALAKDFASHTVYAQKETC 142

Query: 114 INEVRRDKLLEKRLQHRVICKS-----------------FDDSVLLPPGSILNHALQMYK 156
             EV  +KL+ K L+   +  S                      +     +      +  
Sbjct: 143 SEEVNVEKLVSKALRRVHLPHSTGRSTSQGSANSPTLQLVWGGTMYHLDDLPFSTNSIPD 202

Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP------- 209
           VYT FRK++           + +             +P       Q  +  F        
Sbjct: 203 VYTQFRKSVEARCSIRSCAKISMSLGPAPRVEDWGCVPSIEQLGLQPQEAGFMFYLHVSK 262

Query: 210 -----IGEQNALHILRKFCKEKVYY--------------YVEQRD-IPAIQGTSQLSPYL 249
                 GE  AL  + ++  +K                 Y E R+ +     +++ SP+L
Sbjct: 263 GMRFLGGETAALSRVYEYFWKKASGNCFLLSLCLDFLKIYKETRNGMLGPDYSTKFSPWL 322

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           + G LSPR  +  +K      L       +  L ELIWR+++R +   Y +         
Sbjct: 323 ASGSLSPRFIYEEVKRYEKGRL--ANDSTYWVLFELIWRDYFRFISFKYGNSIFHIGGPR 380

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
             E+  W++D  L  +W+ G TG+P+IDA M++L+  G+M NR R I  SFLV+D+ +DW
Sbjct: 381 NVER-RWSQDQRLFDSWRNGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDW 439

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R+G E+F + LLD D  SN G W + A  GND     R F+   Q + +DP+G ++ +WL
Sbjct: 440 RMGAEWFETFLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQTYDPEGEYVAYWL 498

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA---CHHTLNQYYAAKKQS 481
           P+L  +P +  + P            Y   IV  K      H   ++  AA+K +
Sbjct: 499 PQLQELPKEKRNFP---------GKLYMEQIVPLKFGNPNGHRGQDRASAARKTN 544


>gi|224003307|ref|XP_002291325.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana
           CCMP1335]
 gi|220973101|gb|EED91432.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana
           CCMP1335]
          Length = 571

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 120/527 (22%), Positives = 209/527 (39%), Gaps = 80/527 (15%)

Query: 1   MKATTAM-SVHLVWLRN-DLRITDNKALYA------------ACHNSDAKVIAVFIATP- 45
           M ++     +++   R  DLR+ DN AL              A   +   ++ VF+    
Sbjct: 1   MASSATQYKLNIHLFRQTDLRLHDNPALCHTVDLSLGTSSSDAASTAPTGILPVFVFDTT 60

Query: 46  ---------EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDS 96
                              R++ F   ++  ++ +L ++G        S  +  +  + +
Sbjct: 61  RIYGSNAKSRLGNNLKCGPRRARFAIEAVADLRSNLEKRGSGLVVAVGSP-ESILARIAT 119

Query: 97  YCLQQRVTK-----LFYNRQYEINEVRRDKLLEKRLQH------RVICKSFDDSVLLPPG 145
             ++    K     +    +    E+  DK +   L        +   ++   S +  P 
Sbjct: 120 AAVESSGDKGALINVVCQEEVCSEELSVDKAIRSSLAKTMKSTSKFTFETVWGSTMYDPE 179

Query: 146 SILNHAL--QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA 203
           ++        +  +++PFRK         D+ +            +   +P   D  + A
Sbjct: 180 TLPFDGGVFGVPDIFSPFRK---------DVEAKCQIVNDANNKCSLKYMPTLSDLGYNA 230

Query: 204 IDPM--------------FPIGEQNALHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLS 246
            D                +  GE  AL  ++ +  +K     Y + R+ +     +++ +
Sbjct: 231 EDIESVSSVDSRTALPVNYRGGETFALRRVKDYIWDKDLLKLYFDTRNGMIGSDYSTKFA 290

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS---VCM 303
           P+L++G +SPR    R    + +  ++ KS  +  + EL+ R+ ++     +        
Sbjct: 291 PWLALGNVSPRYIA-RECSRYEEQRVQNKS-TYWVVLELLIRDHFKFFAKKHGDKVFYLT 348

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           G        + +W  D   +QAW+ G TGFP++DA MR+L   G+M NR R   ASFL  
Sbjct: 349 GNIGKQRGSERKWGMDRKKIQAWQDGMTGFPLVDANMRELAATGFMSNRGRQNVASFLTI 408

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR G EYF   LLD D+ SN G W  AA      +     FN   Q K +D  G 
Sbjct: 409 DLNIDWRYGGEYFEETLLDYDVHSNWGNWCSAAGMTGGRLNR---FNIVKQSKDYDFGGE 465

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD--------KNDLSLNYPLPIVD 462
           ++R W PEL NVP ++IH+P             K     +YP PIVD
Sbjct: 466 YVRLWCPELKNVPDKHIHSPWEMSGEMMEECGVKIGHGGDYPSPIVD 512


>gi|307107980|gb|EFN56221.1| hypothetical protein CHLNCDRAFT_51884 [Chlorella variabilis]
          Length = 1184

 Score =  296 bits (757), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 125/516 (24%), Positives = 199/516 (38%), Gaps = 74/516 (14%)

Query: 10  HLVWLR-NDLRITDNKALYAACHNSDA----KVIAVFIATPEQ-----WRQHGISARQSH 59
            ++W R  DLR+ DN  ++ A    +A    +V+ +F   P       W        ++ 
Sbjct: 17  AVIWFRGTDLRLHDNAIVHEAARRVEAGQVAEVLPLFCFDPRYFQASAWGSPKTGQFRAR 76

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYEINE 116
           F+  S+  ++  L   G               E L     Q+     T +    +    E
Sbjct: 77  FLLESVRDLKARLRALGSDLLI----CMGRPEEVLPGLMAQRGSGLQTCVLAQSEVTSEE 132

Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHAL--QMYKVYTPFRKALIQNLVQAD 173
           +  +K ++  +         +  S +     +        M  V+TPF++          
Sbjct: 133 LAIEKKVKSAVVAAGGKLDLYWGSTMYHLEDLPFREGLRDMPDVFTPFKQKCEDRCQVRK 192

Query: 174 LRSLPVP-------------------AIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQ 213
               P P                    +     V P   P+           + F  GE 
Sbjct: 193 PFPAPAPGALPLPAGLEAARLAFEPQRVEDLNAVVPEGHPQLASPQRDTRAVLDFEGGES 252

Query: 214 NALHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
            AL  LR +  +      Y + R+ +     +++L+P+L+ G LSPR  +  +K      
Sbjct: 253 AALARLRYYLFDSNLVATYFDTRNGMLGGDYSTKLAPWLAHGCLSPRSVYYDIKRYERQT 312

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
               KS  +  + ELIWR+FYR     + S    +      +  +W+ D+  L+ WK+G 
Sbjct: 313 GTANKS-TYWVVFELIWRDFYRFFALKHGSKIFLEGGTTG-QAPQWSNDAEALRRWKEGR 370

Query: 331 TGFPIIDAAMRQLNTIG--------------------WMHNRLRMITASFLVKDLLVDWR 370
           TG+P++DA  R+L   G                    +M NR R   ASFL  DL VDWR
Sbjct: 371 TGWPLVDANQRELRATGKSRPAGGRPMRIRALLLACGFMSNRGRQNVASFLALDLGVDWR 430

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G ++F   LLD D+ SN G W  AA      V     FN T Q K +D +G +IR W+P
Sbjct: 431 RGADWFEHLLLDYDVCSNWGNWVAAAGLTGGRVNK---FNITKQSKDYDSEGQYIRTWVP 487

Query: 431 ELNNVPTQYIHAPHSWLDKN------DLSLNYPLPI 460
           EL  VP + IH P     +        + ++YP P+
Sbjct: 488 ELACVPARRIHEPWLMSREEQAAAGVQIGVDYPAPL 523


>gi|89054364|ref|YP_509815.1| deoxyribodipyrimidine photo-lyase type I [Jannaschia sp. CCS1]
 gi|88863913|gb|ABD54790.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Jannaschia sp. CCS1]
          Length = 517

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 112/467 (23%), Positives = 175/467 (37%), Gaps = 28/467 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LV  + DLR+ DN AL  A    D   + VF+A PE W Q   SARQ  F+  SL 
Sbjct: 1   MKNVLVLFKRDLRVQDNPALALAASR-DGAALPVFVAEPEAWAQPDASARQWRFVAESLE 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125
            ++  L+  G      +     D +  L   C    V ++    +   +    RD+ L  
Sbjct: 60  GLRADLAALGAPLIVRRG----DMMAVLGGLCATHDVGEIISIEETGNLWSYGRDRRLAA 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +   +  +           +    +Q   V         Q +++     +P     ++
Sbjct: 116 WARGAGVIWT----------EVPQLGVQRRLVNRDGWARDRQAVMRQAQVPVPEGLRGVS 165

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                    R     F         G    L  L  F   +   Y      P       S
Sbjct: 166 EEPGSIPDARDLALAFDPCPGRQAGGRDGGLATLASFLTARGQEYRRAMSSPLDGAAACS 225

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS---GAFSWLNELIWREFYRHLMAFYPS 300
           +LSP+L+ G LS R+  + +     ++            S+   + WR+ +   +   P+
Sbjct: 226 RLSPHLAWGTLSSREVLHGMAARRAEVKGTRDGWLGSLRSFEARVAWRDHFMQKLEDQPA 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           + +      + +      D+  L AW++G TG P +DA MR L   GW++ R+R + A+ 
Sbjct: 286 MEIRCLHSAYEDLRPNVPDATRLSAWEKGETGIPFVDACMRSLIATGWINFRMRAMLAAV 345

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
               L +DWR    +      D +   +    Q     G   +   RI+NP  QG   DP
Sbjct: 346 ASYHLWLDWRRTGPHLARMFTDYEPGIHWP--QMQMQAGTTGMNTIRIYNPVKQGLDHDP 403

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLD-----KNDLSLNYPLPIVD 462
            GTF R W PEL  VP   +  P +W +        L   YP PIVD
Sbjct: 404 TGTFTRTWCPELREVPDACLQTPWAWAETGSPAARRLGRRYPAPIVD 450


>gi|228475792|ref|ZP_04060509.1| deoxyribodipyrimidine photolyase [Staphylococcus hominis SK119]
 gi|228270140|gb|EEK11592.1| deoxyribodipyrimidine photolyase [Staphylococcus hominis SK119]
          Length = 457

 Score =  295 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 139/477 (29%), Positives = 225/477 (47%), Gaps = 30/477 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    RI +N          DA      I   E + + G   +++++ Y +L 
Sbjct: 1   MNIGVI-LNRVFRINNNPLFEYINQQKDAFDKCYLIIPKETFEEKGT-DKKANYYYGTLE 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DKLLE 124
           +    L +       H    +      L  +C +  + ++            R   + L+
Sbjct: 59  KFLYKLKE-------HHIEPYVIDYSELGMFCTEHDIKEIVMAGDIMSYHQERYDIRHLK 111

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +  + H +   + + +    P + +N   Q YKV+T F KA    L Q       +  I 
Sbjct: 112 QAFKNHDIPVITINVNHYFKPSNTMNQQGQPYKVFTSFYKAHRSKLRQHSPYQYQLSDIA 171

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +   I   + +  Q+        E  AL+  + +    +  Y + R+      TS
Sbjct: 172 NKCSQSQQKITNDYHHDGQS--------EDQALNNWKDYLNHSIQNYKKDREYLPEILTS 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G++  +Q    L E + +     +S   S++ E+++REFY  LMA YP +  
Sbjct: 224 QLSIVLAYGLIDIKQIITDLLERYKE----NESNYESFIREVMFREFYYVLMAQYPHIA- 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F      I+W+ +      W +G TGFPIIDAAM +LN  G+MHNR+RM+ + FL K
Sbjct: 279 HEAFNEKYRTIQWSYNKEEFNRWCEGQTGFPIIDAAMNELNETGFMHNRMRMVVSQFLTK 338

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE+YF  +L+D D ASN  GWQW+AS G D+VPYFR+FNP  Q +RFD    
Sbjct: 339 DLFIDWAWGEDYFRKKLIDYDAASNIHGWQWSASIGTDAVPYFRMFNPIRQSERFDKDAL 398

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYY 475
           +I+ ++P  ++VP + +H P     +       L  +YP PIVDHK A  H +  + 
Sbjct: 399 YIKKYIPIFDHVPAKLLHHPFQHQTQLVKKGIQLGKDYPEPIVDHKVAREHVMTIFK 455


>gi|88706143|ref|ZP_01103850.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
 gi|88699537|gb|EAQ96649.1| deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
          Length = 488

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 113/486 (23%), Positives = 182/486 (37%), Gaps = 32/486 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VWL+ DLR+ D+ AL AA   S   V+ ++   PE  +      R   F++ SL  + 
Sbjct: 3   AVVWLKRDLRLQDHAALEAAL-GSGLPVVLLYCFEPELLKDPHYDERHWRFVWESLRDMH 61

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQ 128
           + L       +           E       ++++  ++   +  + +   RD+ L    Q
Sbjct: 62  RRLEAHPRSLRVLHGDPR----EIFRVLADEEQLHSVYSYEETGLEKTFARDRELAALFQ 117

Query: 129 HR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
            R +  K F      P   +             +   +       D R +          
Sbjct: 118 ERSIPWKEF------PSNGVQRGRKNRKGWNRKWTAQMSAPCHDVDHRLI----RGSFAC 167

Query: 188 VTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
                     D P     P       GE  A   L  F + +   Y      P  +    
Sbjct: 168 EERLAAFHLRDLPGSWRSPDNQFQSGGESEAWQTLNDFLERRSPAYARNISKPLASRSSC 227

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSP+L+ G LS RQ +  L+    +          ++ + L W   +           
Sbjct: 228 SRLSPFLAWGNLSIRQVYQALRAAQKERGS--SRALQAFESRLHWHCHFIQKFEMECR-M 284

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +           ++D  L +AW +G TG+P+IDA+MR L   G+++ R R +  SFL 
Sbjct: 285 EHEDINRGYLHHPRSRDDALARAWAEGNTGYPLIDASMRCLAATGYINFRSRAMLVSFLT 344

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
             L  DWR+G  +  S  LD +   +    Q     G   +   RI+NP  Q +  DP G
Sbjct: 345 HHLWQDWRVGAAHLASLFLDFEPGIHFAQLQMQ--AGVTGINTIRIYNPVKQSEEHDPDG 402

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDL-----SLNYPLPIVDHKKACHHTLNQYYAA 477
            FIR W+PEL  VPT  IH P        L     S  Y  P+VD ++      ++ +A 
Sbjct: 403 AFIRQWVPELAEVPTPMIHRPWDLSPMEQLIYGLDSKPYAPPVVDVRETYRSARDRLWAL 462

Query: 478 KKQSLL 483
           K   ++
Sbjct: 463 KDDPVV 468


>gi|327342148|gb|AEA50861.1| cry1-2 [Populus tremula]
          Length = 576

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 175/378 (46%), Gaps = 19/378 (5%)

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           VR  +  E      +  +SF+  +L  P  + +   + +  +  F    +      +   
Sbjct: 5   VRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPL 64

Query: 177 LPVPAIRL-TGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYV 231
           LP   I        PS +  F D   +  + +    +  G  NA   L  F    +  Y 
Sbjct: 65  LPPKRIISGDASRCPSEMLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYS 124

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIW 287
           + R       TS LSP+L  G +S R+ ++ ++ + V    +           +L  +  
Sbjct: 125 KNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGL 184

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE+ R+L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   G
Sbjct: 185 REYSRYLSFNHP-YSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATG 243

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+H+R+R++ ASF VK L + WR G +YF   LLD DL S+  GWQ+   T  D   + R
Sbjct: 244 WLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDR 303

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461
           I NP  +G +FDP G ++R WLPEL  +PT +IH P +  +        +L  NYPLPIV
Sbjct: 304 IDNPQFEGYKFDPNGEYVRRWLPELARLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIV 363

Query: 462 --DHKKAC-HHTLNQYYA 476
             D  K      L++ + 
Sbjct: 364 GIDAAKVRLEEALSEMWQ 381


>gi|75320690|sp|Q5IFN2|CRYD_OSTTA RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|51948350|gb|AAU14279.1| CRY DASH-like protein [Ostreococcus tauri]
          Length = 546

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 128/498 (25%), Positives = 209/498 (41%), Gaps = 58/498 (11%)

Query: 8   SVHLVWLRNDLRITDNK----ALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQS 58
           +  ++W RNDLR+ DN     A   A  +SD +V+ V++     ++          A + 
Sbjct: 4   TRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRG 63

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F    +  ++ SL   G         + D   E   +       T +    +    E  
Sbjct: 64  KFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAEL--TLTGANDRTIILTQTEVTSEETE 121

Query: 119 RDKLLEKRLQHRV-------ICKSFDDSVLLP----PGSILNHALQMYKVYTPFRKALIQ 167
            D  +E+  + R          +    S L      P  + +    +  V+TPFR  +  
Sbjct: 122 MDVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVES 181

Query: 168 NLVQADLRSLPVPAIRLTGPVTPS-----NIPRFFDYPFQAIDPM--------------- 207
                D+  +P P     G V  S      +P+  D PF + +                 
Sbjct: 182 KCKVRDV--IPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERS 239

Query: 208 ---FPIGEQNALHILRKFCKE--KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWN 261
              F  GE NAL  ++ +  E  ++  Y E R+ +     +++L+P+L++G +SPR   +
Sbjct: 240 VLDFKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHVVS 299

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            ++    + +       +  + ELIWR+F++     + +               W +D  
Sbjct: 300 EIRRYESERV--ENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRA-SWKRDEK 356

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           +L+AWK G TG+P+IDA MR+L   G+M NR R   AS+L  D  +DWR G ++F   LL
Sbjct: 357 ILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEHHLL 416

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN G W  AA      +     FN   Q K +DP G +I+ W+ EL  VP  YI 
Sbjct: 417 DYDTASNWGNWCAAAGMTGGRINR---FNIAKQTKDYDPAGEYIKTWVKELAEVPAAYIA 473

Query: 442 APHSWLD--KNDLSLNYP 457
            P+      ++ + LNYP
Sbjct: 474 DPNQAPRELRDRIGLNYP 491


>gi|314937003|ref|ZP_07844350.1| putative deoxyribodipyrimidine photolyase [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655622|gb|EFS19367.1| putative deoxyribodipyrimidine photolyase [Staphylococcus hominis
           subsp. hominis C80]
          Length = 457

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 139/477 (29%), Positives = 225/477 (47%), Gaps = 30/477 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    RI +N          DA      I   E + + G   +++++ Y +L 
Sbjct: 1   MNIGVI-LNRVFRINNNPLFEYINQQKDAFDKCYLIIPKETFEEKGT-DKKANYYYGTLE 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DKLLE 124
           +    L +       H    +      L  +C +  + ++            R   + L+
Sbjct: 59  KFLYKLKE-------HHIEPYVIDYSELGMFCTEHDIKEIVMAGDIMSYHQERYDIRHLK 111

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +  + H +   + + +    P + +N   Q YKV+T F KA    L Q       +  I 
Sbjct: 112 QAFKNHDIPVITINVNHYFKPSNTMNQQGQPYKVFTSFYKAHRSKLRQHSPYQYQLSDIA 171

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +   I   + +  Q+        E  AL+  + +    +  Y + R+      TS
Sbjct: 172 NKCSQSQQTITNDYHHDGQS--------EDQALNNWKDYLNHSIQNYKKDREYLPEILTS 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G++  +Q    L E + +     +S   S++ E+++REFY  LMA YP +  
Sbjct: 224 QLSIVLAYGLIDIKQIITDLLERYEE----NESNYESFIREVMFREFYYVLMAQYPHIA- 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F      I+W+ +      W +G TGFPIIDAAM +LN  G+MHNR+RM+ + FL K
Sbjct: 279 HEAFNEKYRTIQWSYNKEEFNRWCEGQTGFPIIDAAMNELNETGFMHNRMRMVVSQFLTK 338

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE+YF  +L+D D ASN  GWQW+AS G D+VPYFR+FNP  Q +RFD    
Sbjct: 339 DLFIDWAWGEDYFRKKLIDYDAASNIHGWQWSASIGTDAVPYFRMFNPIRQSERFDKDAL 398

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYY 475
           +I+ ++P  ++VP + +H P     +       L  +YP PIVDHK A  H +  + 
Sbjct: 399 YIKKYIPIFDHVPAKLLHHPFQHQTQLVKKGIQLGKDYPEPIVDHKVAREHVMTIFK 455


>gi|195497880|ref|XP_002096288.1| GE25590 [Drosophila yakuba]
 gi|194182389|gb|EDW96000.1| GE25590 [Drosophila yakuba]
          Length = 542

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 114/515 (22%), Positives = 200/515 (38%), Gaps = 50/515 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL AA  + D    +I VFI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +   L      +G +  +       +          Q R+ ++   +  E     RD+ +
Sbjct: 67  IDDQLQAATDGRGRLLVFE-----GEPANIFRRLHEQVRLHRICIEQDCEPIWNDRDESI 121

Query: 124 EKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
               +   +         L  P  ++     +  +        +Q +      +      
Sbjct: 122 RFLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLE 181

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM----------------FPIGEQNALHILRKFCKEK 226
             T     S   R  +   +   P                 +  GE  AL +L +  K +
Sbjct: 182 DATFVELDSEFCRSLNLFEKLPAPDHFNVYTDNMGFLAKINWRGGETQALLLLDERLKVE 241

Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275
            + +     +P             +S +L  G LS R+ +  + + F ++ ++       
Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301

Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333
            +G      +LIWRE++  +    P+    +        I W K    LLQ W+ G TGF
Sbjct: 302 MTGGAHLTGQLIWREYFYTMSVNNPNYDRMEG-NEICLSIPWAKPKEDLLQRWRLGQTGF 360

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           P+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +   G W
Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNW 420

Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
            W +S+  + +     +  P    KR DP+GT+I+ ++PEL NVP +++H P     +  
Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPEGTYIKQYVPELINVPREFVHEPWRMSVEQQ 480

Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                 + ++YP  I+D   A    +      +  
Sbjct: 481 EQYECLIGVHYPERIIDLSMAVKRNMLAMKTLRNS 515


>gi|86134108|ref|ZP_01052690.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
           photolyase subfamily [Polaribacter sp. MED152]
 gi|85820971|gb|EAQ42118.1| DNA photolyase/cryptochrome, animal cryptochrome and (6-4)
           photolyase subfamily [Polaribacter sp. MED152]
          Length = 496

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 103/481 (21%), Positives = 201/481 (41%), Gaps = 27/481 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW + DLR+ DN+A+  A   +   V+ +++           + R  +FI  S+ ++
Sbjct: 8   INVVWFKRDLRLQDNEAIQNAL-LTKKPVLFLYVFENSLLEDPHYNIRHWNFIKESIQEL 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRL 127
              L+     F     +   + I   +      ++  +F +++  + +   RDK   +  
Sbjct: 67  NDDLTA----FNTKILTVTSEVITVFNQLQNFYKIDTVFSHQETGLLKTYNRDKDFARYC 122

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           ++  I    +++       +L   L  +     +   + +  ++ D ++  + +      
Sbjct: 123 RNNSINWVENNN-----NGVLRGLLNRHDWLEKWENFMYKPQIKNDFKNRNLISEDEITT 177

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTSQL 245
           +    I    + P +A       G +        F +E+   Y+     PA+  +  S+L
Sbjct: 178 IENHFIVTDLETPKEA--KFQKGGSKMGWRYANSFFEERYKNYMNHISKPALSRKSCSRL 235

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPY++ G LS RQ + +      D   + K    ++++ L W+  +              
Sbjct: 236 SPYIAWGNLSIRQVYQKAIMLKND---ENKRQLGAFVSRLRWQAHFIQKFE-MEHTMEEA 291

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                  K++ N  +   +AW++G TGFPIIDA+MR L+  G+++ R+R + ASF    L
Sbjct: 292 SINKGYHKLKKNISTKYQKAWREGKTGFPIIDASMRCLSETGYLNFRMRSMLASFFTHIL 351

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
              W+    +     LD +   +    Q    +G   +   R++NP       D    FI
Sbjct: 352 WQPWQDSSHHLSQLFLDFEPGIHFP--QLNMQSGETGINEIRVYNPIKNSLEHDEDANFI 409

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           + W+PEL N+PT +IH P+     ++      L ++YP PIVD K A        +  KK
Sbjct: 410 KEWVPELANLPTAFIHQPYLMTPLDEQFNNFKLGVDYPKPIVDFKSARKRATQTLWDMKK 469

Query: 480 Q 480
            
Sbjct: 470 D 470


>gi|242372923|ref|ZP_04818497.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           M23864:W1]
 gi|242349407|gb|EES41008.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           M23864:W1]
          Length = 457

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 140/479 (29%), Positives = 231/479 (48%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M V ++ L    R+ +N  L+     +   +   +   P Q +    +  ++++ Y +L 
Sbjct: 1   MKVGVI-LNRVFRLENNP-LFEYISQNKEDIDQCYFIIP-QEKFDKEAEMKANYYYGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +   +L    I         F    + L  +C  + ++++            +  +L++ 
Sbjct: 58  KFVDTLHDYDI-------QPFLVDYDELTHFCKDKGISEVVLAGDIMSYHEEKYDILQQS 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
                  +   S   +    P    N+  + YKV+T F K     L++  + S  +  I 
Sbjct: 111 ASFKNEGISVVSVRANHYFKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRSVFSYDIKDIA 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             G  +   +   +          + I E +A +    F  + +  Y   R+      TS
Sbjct: 171 KMGVKSQQKVKGDY--------SQYGISEADAQYRWSDFLDKDIENYNTNREYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS YL+ GVL   Q +N L E +     K +    S++ ELI+REFY  LM +YP    
Sbjct: 223 QLSIYLAYGVLDIIQIFNDLLENY----DKDEQNYESFIRELIFREFYYVLMTYYPETA- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F      ++W+ +      WK+G TGFPIIDAAM +LNT G+MHNR+RM+ + FL K
Sbjct: 278 HQSFKDKYRDLQWSYNKENFNLWKEGKTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GEEYF  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD    
Sbjct: 338 DLFIDWTWGEEYFRQKLIDYDSASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKDAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ ++  LN++  +Y+H  H +  +      +L  +YP  IV+H ++  H ++++ A 
Sbjct: 398 YIKKFVQTLNDIDAKYLHDTHKYERQIKEQGIELGKDYPKQIVNHSESRTHVMSEFKAL 456


>gi|225010805|ref|ZP_03701273.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-3C]
 gi|225005013|gb|EEG42967.1| Deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium
           MS024-3C]
          Length = 491

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 103/485 (21%), Positives = 186/485 (38%), Gaps = 26/485 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLR+ D++ L  A  + + KV+ ++       +    S     FI   L ++
Sbjct: 1   MVVVWFKRDLRLEDHEPLTRAFASGE-KVLLLYSFESFWTQDPHYSDLHIDFIQEGLEEI 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRL 127
           Q  L +             D   E L     ++ +  L+ + +  ++    RDK ++K  
Sbjct: 60  QLKLKEYDTKILILS----DYIPEILKKIHSKEPIKALYSHMEAGMDITYTRDKAVKKWC 115

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            Q+ +    F  + L              K    +   +   +                 
Sbjct: 116 TQNSIHWHEFAQNGLW------RALKNRQKWRDHWISQMKAPIHIPSFLPTTYYTASEID 169

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
            ++ +      +        +   G  N    L  F  +++  Y +    P  +   + +
Sbjct: 170 GLSAALKLVPLELNITHKKGIQIGGSLNGWKYLHSFMTKRISGYQKYYSKPLESRLHSGR 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +SPYL+ G+LS +Q    +      +    K    S+L+ L W+  +       PS+   
Sbjct: 230 ISPYLAWGMLSAKQVLQYVTRHQKQV--SNKRNINSFLSRLSWQAHFIQKFEMEPSIEFD 287

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                    +          AW+QG TG P++DAAMR L   G+++ RLR + ASF    
Sbjct: 288 -AVNKGYAALNKTVIPAHQLAWRQGQTGVPMVDAAMRCLVQTGFVNFRLRAMLASFFTHL 346

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L   W+    +     LD +   +    Q     G   +   RI+NP   G   DP+G F
Sbjct: 347 LWQPWQDCSPHLAQHFLDFEPGIHFPQLQMQ--AGETGINTIRIYNPVKNGLDHDPKGIF 404

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           I+ W+PEL  +P  Y+H P              L  +YP PI+D +K+  +  +Q +  +
Sbjct: 405 IKKWVPELALIPEVYVHEPWKMPPLEAAFLNFTLGNDYPAPIIDLEKSRKYAADQLWGLR 464

Query: 479 KQSLL 483
           K +L+
Sbjct: 465 KTNLV 469


>gi|46124775|ref|XP_386941.1| hypothetical protein FG06765.1 [Gibberella zeae PH-1]
          Length = 685

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 122/551 (22%), Positives = 200/551 (36%), Gaps = 85/551 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA     +    +F   P    +      +  F+      + K
Sbjct: 59  IYWFRTDLRLHDSPALKAALDLDPSVFWPIFTWDPHYVYRARGGLNRWQFLLDCQNDLSK 118

Query: 71  SLSQ--KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           S+++          +    +             +VT + + +  +     RD ++ +  +
Sbjct: 119 SITKVNSNSKLFVLR----EAPQTLFPKLFKAWKVTHIVFEKDTDSYARERDSIVTQAAK 174

Query: 129 HRVICK-------SFDDSVLLPP-------------------GSILNHALQMYKVYTPFR 162
              +          +D   ++                     G +         +  P  
Sbjct: 175 DAGVEVIIRSGRTLWDSDQIVEKHGGKPTMSITQLQAAGSKLGQVKKPIPAPKNLPDPGD 234

Query: 163 KALIQNLVQADLRSLPVPAIR---------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213
             +  +  + D +      IR         ++GP     I    +  F         GE 
Sbjct: 235 MPVNFDQDEPDTKPDFNSEIRTEGDKTYTKISGPKGDFAIETMEELGFPPATTPHRGGET 294

Query: 214 NALHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
            AL  L +   +K Y   + + +  PA    Q T+ LSP+L  G LS R+ + R+K+  V
Sbjct: 295 LALKALDEIIADKKYTATFQKPKTSPAQFEPQATTLLSPHLHFGSLSVREFYWRVKD-VV 353

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN----KDSH--- 321
           D      S   S + +L++R+ Y    A    V       P+   I W+    +D     
Sbjct: 354 DSYKGASSPPESLIGQLLFRDMYFAAQAALGYVFSQTANNPYCRFIPWHLPSKRDPETGL 413

Query: 322 --------------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366
                           + WK G TGFP IDA MRQL   GW+H+  R   A FL +    
Sbjct: 414 VTGEYHVDSEEADIWFKRWKAGMTGFPWIDALMRQLKDEGWIHHLGRHAVACFLTRGGCY 473

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW  G E F   L+D + A N G WQW  S       YFR ++P   G+++D +G FIR
Sbjct: 474 IDWERGCEVFEEWLIDHEPACNVGNWQW-LSCSAFFSQYFRCYSPVAFGQKWDKKGEFIR 532

Query: 427 HWLPELNNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKACHHTL 471
            ++PEL N+  +YI+ P      +                    YP P+ D  K     +
Sbjct: 533 RYVPELKNMDAKYIYEPWKAPLTDQKKAGVRVKGDGLNNVEEGTYPKPMFDFAKRRDVCI 592

Query: 472 NQYYAAKKQSL 482
           +    A +  L
Sbjct: 593 SSMKVAYQVGL 603


>gi|89076746|ref|ZP_01163027.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp.
           SKA34]
 gi|89047602|gb|EAR53213.1| deoxyribodipyrimidine photolyase, putative [Photobacterium sp.
           SKA34]
          Length = 486

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 121/487 (24%), Positives = 204/487 (41%), Gaps = 41/487 (8%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           VWL+ DLR+TD++AL  A  NS   V+ ++I  P        S R   FI+ SL  +   
Sbjct: 2   VWLKRDLRLTDHQALSVAA-NSAFPVLLIYIMEPMLLSDPHYSERHWRFIWQSLEDMNHQ 60

Query: 72  LSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL-Q 128
           L+     VF +H      +++E LD       +  LF +++  +     RD  ++    +
Sbjct: 61  LACVNSQVFIFH-----GNAVECLDQLMHHCPINALFSHQEIGLGCTFERDLNIKAWCDK 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV----PAIRL 184
            ++    F        G+++  A         + + + + +   +L  +      P    
Sbjct: 116 QQIQWHEFQQ------GAVIRGAKNRTNWDKQWNRVMREPVFSVNLDKVNWVSTYPEQLA 169

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
               +P    R  +   Q        G   AL  L  F   +   Y      P  +    
Sbjct: 170 DMLFSPPESWREREQGMQT------GGSTLALQTLDDFFSRRGKEYYRSISSPTASRTAC 223

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV- 301
           S+LSPYL+ G +S RQ + ++   + D   +    A S  + L W   +       P++ 
Sbjct: 224 SRLSPYLAWGNISLRQVYQQVLAHWNDKGFRRSLIALS--SRLHWHCHFIQKFESEPAIE 281

Query: 302 --CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
             CM + +     +   +KD   L+AWK+G TG P+IDA MR L   G+++ R+R +  S
Sbjct: 282 YFCMNRTYDRLLAE-SCSKDDLKLKAWKEGNTGIPLIDACMRCLYHTGYINFRMRSMLVS 340

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL   L +DWR G  +     LD +   +    Q     G   +   RI+NPT Q +  D
Sbjct: 341 FLTHHLNIDWRDGVTHLAQLFLDFEPGIHYSQLQMQ--AGVTGINTIRIYNPTKQAQEHD 398

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL--SLN----YPLPIVDHKKACHHTLNQ 473
           P G FI  W+PEL N+P   +  P +  +   +   L+    Y  PI+D K++      +
Sbjct: 399 PDGEFIHKWVPELGNIPVPLLFEPWNLTELEVVMYQLDNNSCYLYPIIDLKRSAKEARQR 458

Query: 474 YYAAKKQ 480
            +  + +
Sbjct: 459 LWGWRGR 465


>gi|85711300|ref|ZP_01042359.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica
           OS145]
 gi|85694801|gb|EAQ32740.1| putative deoxyribodipyrimidine photolyase [Idiomarina baltica
           OS145]
          Length = 483

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 111/487 (22%), Positives = 188/487 (38%), Gaps = 35/487 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++++VW + DLR++D++ L AA  ++    +  F   P          R   FI  S+ 
Sbjct: 1   MAINVVWFKRDLRLSDHEPLKAAI-STGRPTLLWFNFEPWLVNDPHYDERHWRFIVESIR 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEK 125
            + + L              + D++E L  +  Q  +  L+ +++  + N   RDK +  
Sbjct: 60  DINRKLKAYNTQIYV----TYGDTVEQLQIWHQQFSIESLYSHQEVGLLNTFDRDKQVAS 115

Query: 126 RLQHRVICKSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                  C+    +    P G++        +    + + +   L   DL  +       
Sbjct: 116 W------CRQHHVNWFESPTGAVQRGLNSRQQWQKHWYETMKAPLATPDLARIQPVK--- 166

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
                  +        F+        G   A   L  F +++   Y      P  A    
Sbjct: 167 ---AVSVDYRTLPKSWFERRPSFQYGGPAAAWATLNSFLEQRGRAYHYSISQPIRAQHHC 223

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL+ G LS R+C+    ++  +   K    A  +L+ L W   +        +  
Sbjct: 224 SRLSPYLAWGNLSLRECYQATVDKRRETGWKRPLNA--FLSRLHWHCHFIQKFES-ETAM 280

Query: 303 MGKPFIPWTEKIEWNKD---SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              P     E   +  D      L+AW+QG TG+P++DAAMR L   G+++ R+R +  S
Sbjct: 281 QHAPLNRAYENYPYRSDTQVEQHLKAWQQGKTGYPMVDAAMRCLLQTGYINFRMRALLVS 340

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL   L + W+    +  +  LD +   +    Q  A          R++NP  Q    D
Sbjct: 341 FLCHYLHIHWQYATTHLAALFLDFEPGIHYPQIQMQAGII--GTNTIRMYNPEKQAIEKD 398

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQ 473
           P G +I  W+PEL  +P +  HAP+             L  +YP PIVD         + 
Sbjct: 399 PTGAYIDQWVPELAELPLEIKHAPYRITPMEAQMYGFKLGEDYPSPIVDVDDYRPIARDT 458

Query: 474 YYAAKKQ 480
            Y  KK 
Sbjct: 459 LYRIKKS 465


>gi|254423250|ref|ZP_05036968.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC
           7335]
 gi|196190739|gb|EDX85703.1| FAD binding domain of DNA photolyase protein [Synechococcus sp. PCC
           7335]
          Length = 527

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 110/479 (22%), Positives = 193/479 (40%), Gaps = 32/479 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W + D R+ D++ L  A       V+ +++  P+ W     S RQ  F+   + +  ++
Sbjct: 1   MWFKKDFRLFDHRCLTFAAQKG--PVLPLYVVEPDYWALEDTSYRQYLFLKGCVEETIEA 58

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQHR 130
           L + G            D +E L          +L+ +++   N   +RDK + K  Q  
Sbjct: 59  LEELGGSMAIASG----DVVEVLSRLQKTYGNIELWAHQETGNNWTFQRDKAVRKWCQQA 114

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT- 189
            +           P  +     +  K+          +L+   + SLP     +      
Sbjct: 115 GVA-------FHEP--LQFGVWRGSKINRDHWAKQWDSLMAEPIASLPESISFVAHSEDR 165

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247
               P         I  + P G   AL +L  F  E+   Y      P     G S+LSP
Sbjct: 166 TMPSPEVLGLKHDGITALQPPGRNAALQVLSSFLYERGERYRTDMSSPVTGESGCSRLSP 225

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW-------LNELIWREFYRHLMAFYPS 300
           YL+ G +S R+ +   ++   ++   PK+   +W       +  L W   +   +   P 
Sbjct: 226 YLAYGAISMRETYQATQKRIAEVAAMPKAERGTWAGSLSSFVGRLHWHCHFTQKLELEPE 285

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +        +T   +    +  L+A+ +G TG+P +DA MR L   GW++ R+R +  SF
Sbjct: 286 LEWLPMARAYTGIRDDGDHAIKLRAFAEGQTGYPFVDACMRYLRATGWINFRMRAMLMSF 345

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
              DL + W+   +       D +   +    Q    +G   +   RI++P  QG   D 
Sbjct: 346 ASYDLWLPWQKSGDVLARLFTDYEPGIHWPQSQMQ--SGVTGINAIRIYSPIKQGLDQDI 403

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +GTF R W+PEL  +P + +  P       +  L+YP PIV+HK+A     ++ +A KK
Sbjct: 404 EGTFTRQWVPELAALPDEILQTPWLL----EGELSYPPPIVEHKEAAALAKSRLWAIKK 458


>gi|194900020|ref|XP_001979555.1| GG23184 [Drosophila erecta]
 gi|190651258|gb|EDV48513.1| GG23184 [Drosophila erecta]
          Length = 542

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/515 (22%), Positives = 200/515 (38%), Gaps = 50/515 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKV--IAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL AA  + D  V  I VFI   E      +   +  F+  SL  
Sbjct: 7   NVIWFRHGLRLHDNPALLAALADKDQGVALIPVFIFDGESAGTKNVGYNRMRFLLDSLQD 66

Query: 68  VQKSLSQ----KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +   L +    +G +  +     F            Q R+ +L   +  E     RD+ +
Sbjct: 67  IDDQLQEATDGRGRLLVFEGEPAF-----IFRRLHEQVRLHRLCIEQDCEPIWNHRDETI 121

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
               +   I         L  P  ++     +  +        +Q +      +      
Sbjct: 122 RALCRELGIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTVQIIGLPPRPTADARLE 181

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM----------------FPIGEQNALHILRKFCKEK 226
             T         R  +   +   P                 +  GE+ AL +L +  K +
Sbjct: 182 DATFVELDPEFRRSINMFEKLPTPHHFNVYEDNMGFLAKIKWRGGEKQALLLLGERLKVE 241

Query: 227 VYYYVEQRDIPAI------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----- 275
            + +     +P             +S +L  G LS R+ +  + + F ++ ++       
Sbjct: 242 QHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQ 301

Query: 276 -SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGF 333
            +G      +LIWRE++  +    P+    +        I W K    LLQ W+ G TGF
Sbjct: 302 MTGGAHITGQLIWREYFYTMSVNNPNYDRMEG-NEICLSIPWAKPKEDLLQRWRLGQTGF 360

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           P+ID AMRQL   GW+H+ LR   A+FL +  L   W  G ++F+  LLD D +   G W
Sbjct: 361 PLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHFLKYLLDADWSVCAGNW 420

Query: 393 QWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
            W +S+  + +     +  P    KR DP GT+I+ ++PEL  VP +++H P     +  
Sbjct: 421 MWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELVKVPKEFVHEPWRMSAEQQ 480

Query: 452 ------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                 + ++YP  I+D   A    +    A +  
Sbjct: 481 EQYECLIGVHYPERIIDLTMAVQRNMLAMKALRNS 515


>gi|88802282|ref|ZP_01117809.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii
           23-P]
 gi|88781140|gb|EAR12318.1| putative deoxyribodipyrimidine photolyase [Polaribacter irgensii
           23-P]
          Length = 496

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 107/487 (21%), Positives = 195/487 (40%), Gaps = 27/487 (5%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           T    +H+VW + DLR+ DN+A+  A   S+ +V+ +++             R   FI  
Sbjct: 3   TNKEEIHVVWFKRDLRLQDNEAIQNALA-SNKRVLFLYVFENSLIEDPHYDTRHWDFIKQ 61

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKL 122
           S++ +   L +        Q    +   +  DS+    +V  +F +++  +     RDK 
Sbjct: 62  SVVALNAELKKYDTKVLCVQTEVVNAFNQIFDSF----KVDTVFSHQETGLLITYNRDKE 117

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
             +  ++  +    +++       +L   L     +  +   +    ++  L +     I
Sbjct: 118 FTRYCRNNSVTWKENNN-----NGVLRGLLNRADWFDKWDDYMYDTQIKNTLNA--EKFI 170

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--Q 240
            +                          G + A      F + +   Y+     PA+  Q
Sbjct: 171 SIEEIEQIEAYFNTVALETPKHSYFQQGGTKMAWKYADTFFQTRHEKYMSNISKPALARQ 230

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LSPYL+ G +S RQ +    +   D   +       +++ L W+  +         
Sbjct: 231 SCSRLSPYLAWGNVSIRQIFQEATKRKTDANKRHLGA---FISRLRWQAHFIQKFE-MEH 286

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                      +K++ +      +AW+ G TGFP+IDA+MR L   G+++ R+R +  SF
Sbjct: 287 TMENASINKGYQKLKKSISLEYQKAWETGTTGFPLIDASMRCLKETGYLNFRMRAMVVSF 346

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
               L   W+   ++     LD +   +    Q   + G   +   RI+NP       D 
Sbjct: 347 FTHILWQPWQSSSQHLSKLFLDFEPGIHFSQLQM--NAGETGINTLRIYNPIKNSIEHDE 404

Query: 421 QGTFIRHWLPELNNVPTQYIHAPH--SWLDKN----DLSLNYPLPIVDHKKACHHTLNQY 474
            GTFI+ W+PEL N+   +IH P+  + LD+     +L +NYP PIVD K A     +  
Sbjct: 405 DGTFIKKWVPELANLSIAFIHEPYLMTPLDQQFNNFELGINYPHPIVDIKIARKKASDTL 464

Query: 475 YAAKKQS 481
           +  KK S
Sbjct: 465 WEMKKNS 471


>gi|301121222|ref|XP_002908338.1| cryptochrome, putative [Phytophthora infestans T30-4]
 gi|262103369|gb|EEY61421.1| cryptochrome, putative [Phytophthora infestans T30-4]
          Length = 568

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 133/539 (24%), Positives = 218/539 (40%), Gaps = 86/539 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHN-----SDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           L+W R DLR+ DN AL AA  +     SD ++I+++I    + +     A +  F+  S+
Sbjct: 4   LLWFRRDLRLHDNLALNAALQHIEEAKSDVELISLYII--HRPQIMRCGANRFQFVLESV 61

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLE 124
             +  +L+++G      +     DSI+ L        +T +F++   E   V RD + L 
Sbjct: 62  ADLSGALAERGSKLVVAKG----DSIQVLRRVLPAWDITHMFFDGVCEPYAVERDDRALA 117

Query: 125 KRLQHRVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPV---- 179
                 V         L     ++ +H+ +  K Y  F KA+       +    P     
Sbjct: 118 LAKSLGVQTHVTKGYNLYDLEVVIASHSGKAPKTYQRFLKAVGAQPTPREPIPTPETLPS 177

Query: 180 --------------------------------PAIRLTGPVTPSNIPRFFD-----YPFQ 202
                                              ++     P +     D     Y   
Sbjct: 178 PTRKHSELYEQIANYWKDRKLSDEEKEDDLEERERQIDQIAGPEHDFTLPDLTYFGYETP 237

Query: 203 AIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRDIPAI----QGTSQLSPYLSIGVLSP 256
                   GEQ AL +L+ +C  +++V  + + +  PA       T+ LSPY+  G LSP
Sbjct: 238 EKHSFIYGGEQKALEMLKNYCSDQDRVALFEKPKTSPAQIPPTPSTTVLSPYMFYGCLSP 297

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316
           R  +++++        K      S + +L+WR+FY       P     +       ++ W
Sbjct: 298 RTFYHQVRSIQRG-RKKVSVPPVSLIGQLLWRDFYHCHGRANPYFDKMEE-SSTCLQVNW 355

Query: 317 NK-----DSH-----------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  +               +AW+ G TGFP IDA M QL   GWMH+  R   A F
Sbjct: 356 RYHTIPENEEDLSDDDKLARSQFEAWRDGRTGFPWIDAIMIQLKEEGWMHHLARHSVACF 415

Query: 361 LVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           L + DL + W  G E F  +L+D D + N G W W +S+   +  YFR+++P   GK+ D
Sbjct: 416 LTRGDLYISWVRGLEVFQERLIDHDWSLNAGNWLWLSSSYFFTA-YFRVYSPISFGKKSD 474

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLN 472
           P+G FI+ ++P L N P +YI+ P              +  +YP PI++HK A    + 
Sbjct: 475 PEGLFIKKYIPALKNFPAKYIYEPWKAPLTLQHAAGCRIGKDYPTPIIEHKTAMKRCVE 533


>gi|103486487|ref|YP_616048.1| deoxyribodipyrimidine photolyase [Sphingopyxis alaskensis RB2256]
 gi|98976564|gb|ABF52715.1| Deoxyribodipyrimidine photo-lyase type I [Sphingopyxis alaskensis
           RB2256]
          Length = 457

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 140/468 (29%), Positives = 217/468 (46%), Gaps = 36/468 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+WLR DLR+ D+         +   VI VFI   E      I A Q  +++ SL 
Sbjct: 1   MTASLLWLRQDLRVHDHP--ALLAAIAGGAVIPVFILDDETPGTWKIGAAQRWWLHHSLT 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  SL ++G      + +    +   L     +    ++     YE       K  E+R
Sbjct: 59  ALGASLKKRGSKLILRRGA----AHTELARIARETGSRRIHATHAYEPW----WKHSEER 110

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   +     D + L  P SI+N     Y+V+TP+ + L+ +               +  
Sbjct: 111 LPTDIALVLHDGNYLAAPDSIVNGQGARYRVFTPWYRRLLDH---MPPTLPQAAPDAVPA 167

Query: 187 PVTPSNIPRFFDYPFQAIDP-------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           P +        D+      P        +  GE+ A    R +  + +  Y  +RD PA 
Sbjct: 168 PASWPRSDDLADWDLLPTRPNWAAGFGAWCPGEKGAWRAARDWL-DAIGDYKARRDYPAQ 226

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS+LSP+L  G +SPR  W+ + E       +  +GA S+ +EL WRE   +L+   P
Sbjct: 227 PATSRLSPHLHFGEISPRALWHAIGE-------RDDAGAESYRSELGWREHGINLVDQMP 279

Query: 300 SVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                +      ++  W   +       AW +G TG+P++DA MR+L   GWMHNR+RM+
Sbjct: 280 DYA-DRNGRELFDRFAWRTGADADRDFAAWTRGRTGYPVVDAGMRELWQTGWMHNRVRMV 338

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           TASFLVK LL+DWR GE +F   LLD DL SN   WQ+ A TG D+  + RI +P +Q +
Sbjct: 339 TASFLVKHLLIDWRRGERWFWDTLLDADLGSNAMNWQYVAGTGVDAPVFSRIMSPLLQCE 398

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           RF     ++R  +PEL ++    I A H    ++  +  YP P++ H+
Sbjct: 399 RF-AMADYVRAHVPELAHLSDAEIAASHG---RDSGAPGYPEPLIGHE 442


>gi|284035533|ref|YP_003385463.1| deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
 gi|283814826|gb|ADB36664.1| Deoxyribodipyrimidine photo-lyase [Spirosoma linguale DSM 74]
          Length = 561

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 106/498 (21%), Positives = 189/498 (37%), Gaps = 53/498 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSD----AKVIAVFIATPEQWRQHGISARQSHFIYA 63
           +++++W + DLR+ D+  L AA           ++ ++   P          R   F+Y 
Sbjct: 15  TINILWFKRDLRLRDHAPLQAAIAMGQRAPKRPLLLLYCFEPSLIADPNYDLRHWRFVYE 74

Query: 64  SLLQVQKSLS--------QKGIVFQYHQCSNFDDSI--------------------EWLD 95
            L  ++K L+          G +        FDD                      + L 
Sbjct: 75  CLADLRKQLATVPPPAPSDTGRLVHEWLPFEFDDQADDHQPETGLPTVWVFHREVTDVLT 134

Query: 96  SYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQ 153
           +   Q  +  +F  ++  +     RDK + +  + + I  + F ++ +          L+
Sbjct: 135 ALQTQFTIGSIFSYQETGLAVTYDRDKAVAQFCRQQGIGWQEFQNNGVF-------RRLK 187

Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213
               +    +  +Q   Q    +   PA            P       +      P GE 
Sbjct: 188 NRDTWAAQWQQTMQQPQQHPDLTAWYPADVPPDWFEAERGPDLPAAWQRPNPSFQPGGEY 247

Query: 214 NALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
           N    L  F +E++  Y      P  + +G S+LSPYL+ G LS RQ +   ++      
Sbjct: 248 NGHRYLASFLQERIALYAASISKPLASRRGCSRLSPYLAWGCLSIRQVYQAQQQAAKKPQ 307

Query: 272 IKP-KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
           +   +    ++ + L W   +         +          + +  N +     AW+ G 
Sbjct: 308 LAGLRRQLAAFASRLRWHCHFIQKFEREERMEFENVNRA-FDAVPKNVNPDHYAAWRDGR 366

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG+P++DA MR L   G+++ R+R +  SFL   L   W+ G  +      D +   +  
Sbjct: 367 TGYPLVDACMRCLAATGYINFRMRAMLTSFLTHHLFQHWQEGGWHLARLYTDFEPGIHYA 426

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW---- 446
             Q  +          RI+NP  Q +  DPQG FI+ W+PEL N PT YIH P +     
Sbjct: 427 QLQMQSGMT--GTNTIRIYNPVKQSQEHDPQGVFIKQWVPELANCPTAYIHQPWTMPPLE 484

Query: 447 --LDKNDLSLNYPLPIVD 462
             ++   + ++YP PI+D
Sbjct: 485 QAMEHFQIGIDYPAPIID 502


>gi|205372682|ref|ZP_03225493.1| deoxyribodipyrimidine photolyase [Bacillus coahuilensis m4-4]
          Length = 482

 Score =  293 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 110/480 (22%), Positives = 192/480 (40%), Gaps = 22/480 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ D+R+ D++ LY A    +  V  V++  P  W+   +S R  HFI  SL ++
Sbjct: 1   MNIVWLKRDIRLQDHRPLYEASLRGETLV--VYVVEPSIWKDEPLSMRHLHFILESLEEM 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
           Q S +  G            + I+ L     Q    +L+ +++Y    +  R+K+++  +
Sbjct: 59  QNSFNSIGGKLAVFHG----EMIDALSLLYTQYGPFRLWSHKEYGPKALLERNKIVKDWM 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +   +  +   +        ++      K +    +  +   V      +  P    +  
Sbjct: 115 EKNGLHWTEYQAT------AISQKSSSIKQFKKEWQVFMDEPVLPKPIRIQAPDKLPSSF 168

Query: 188 VTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS-- 243
           +      +      +     F    GE  A   L+ F  E+  +Y   +  P     S  
Sbjct: 169 IKDLAGYKKKSQGIKGEPIRFGQQGGELLAWDTLQTFLDERFVHYETNQMNPLASSISGS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPYL+ G +S R  +  +                 +L+ ++ R+F    +   P++  
Sbjct: 229 RLSPYLAFGNISSRDVYQTVLSSKQKGESHSLEQLDLFLSRILRRDFLHQRLIENPTL-H 287

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                P  + +  N  S       QG TG PI+DA +R L   GW++   R +   F+ +
Sbjct: 288 QYSLHPLFDGVRLNLSSKEYNRILQGETGIPIVDAGVRSLKLTGWLNESTRKMIVMFMCQ 347

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            +   W+       S  LD D   +    QW A T     P  R+ NP   GK  DP G 
Sbjct: 348 TMRQSWQKVAFDLGSLFLDYDPGIHYSEIQWQAGTWGSKPP--RVVNPIKIGKEQDPNGE 405

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
           F++ ++ EL  VP +YIH P  +      SL YP PIVD  K    +  ++   K    L
Sbjct: 406 FVKRYVQELKTVPVEYIHEPWKY--PGVFSLQYPAPIVDVVKVNKESRRKFKEIKAAQTL 463


>gi|313242055|emb|CBY34235.1| unnamed protein product [Oikopleura dioica]
          Length = 539

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 132/497 (26%), Positives = 219/497 (44%), Gaps = 41/497 (8%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH---GISARQSHF 60
              + + L   R DLR+ DN +L  A  +   +++ VF+  PEQ         S     F
Sbjct: 51  DDGVKIALFIFRRDLRLIDNTSLIQAIKDG-YRILPVFVFPPEQIDPEKNEWFSHPSVQF 109

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  + + L ++              ++E +         + + YN  Y +    RD
Sbjct: 110 MCESLNDLGRQLKEE---VDGKLHLFMGGNLETIKKIKEVVNFSAIAYNEDYSVYARERD 166

Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +E+  + + V     +D  LLP    +  A    K   P    ++    +   +   +
Sbjct: 167 GEIEEWAESNNVEIIKEEDYGLLP----IKDAWHHPKDGPPKPYRVLSIFFKHIQKFYDI 222

Query: 180 PAIRLTGPVTPSNIPRF---FDYPFQAIDPMF--------PIGEQNALHILRKFCKEKVY 228
                      S   +    F +    ++ ++          G    L  L K   +   
Sbjct: 223 RKPESNFEFEASQFTQSKFSFKFSISKLNTLYNANEKLAERGGRLVGLIGLEKI--KNKK 280

Query: 229 YYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y E R+   ++ GT+++S +L  G +S R+ + R  E F +            + +L++
Sbjct: 281 DYNETRNFMHLKAGTTKMSAHLKFGTVSIREMYWRTAELFGE--------THDLIRQLVF 332

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           R+FY  + +  P +  G       + +I W+ D  L  AW +G TGFP++DAA RQL  I
Sbjct: 333 RDFYLKIYSHNPELQRGTALQAGVDERIPWSDDEKLWTAWCEGMTGFPLVDAAQRQLKEI 392

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GW HNR+RM+T   L K  ++DWR G ++F   L+D D+ +N  GW W +STG D+VPYF
Sbjct: 393 GWQHNRMRMLTGCVLTKYFMIDWRKGMKFFYQNLVDADVFNNTAGWGWVSSTGPDAVPYF 452

Query: 407 R-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-----YPLPI 460
           R  FNP IQ K+FD +G +I+ ++PEL +V    +H       +     N     YP P+
Sbjct: 453 RPPFNPWIQSKKFDLEGKYIKQYIPELADVSPADLHKWGDASIRAKYKKNKKVQAYPAPV 512

Query: 461 VDHKKACHHTLNQYYAA 477
           V H +A  + +  Y  A
Sbjct: 513 VKHDEASKNAVYLYKKA 529


>gi|120437052|ref|YP_862738.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii
           KT0803]
 gi|117579202|emb|CAL67671.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii
           KT0803]
          Length = 438

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 128/444 (28%), Positives = 207/444 (46%), Gaps = 27/444 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP-----EQWRQHGISA 55
           M      +  LVW RNDLRI+D++AL  AC NS  K+I ++   P     +Q+       
Sbjct: 5   MPKKQTTNTGLVWFRNDLRISDHEALTTAC-NSHEKIIGIYCFDPRHYLKDQFGFIKTGK 63

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +S F+  ++ ++QK+L    I     Q    D   E +     +  V  +++ +++   
Sbjct: 64  FRSKFLIETIEELQKNLETLNIELLVFQEKPEDIIPEIIS----EYSVKSVYFQKEWTQE 119

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADL 174
           E   +K +  RL + +   S+    L  P  I   +   + KVYT FRK+  +     +L
Sbjct: 120 EHDVEKEVR-RLVNDIEFNSYYQQFLFHPEDIPFSSFNDIPKVYTEFRKSCEKYSKVREL 178

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEKVY 228
            +LP P      P   + IP F D      +        F  GE  A   ++++  E   
Sbjct: 179 VNLPSPLPARNLP-EKAKIPSFKDLGHDDYEKDKRSAFPFKGGEDQAKKRIQEYFWESKN 237

Query: 229 --YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              Y E R+ +     +S+LS +L+ G +S RQ ++ +K+   +  I      +  + EL
Sbjct: 238 LTRYKETRNEMIGANYSSKLSAWLANGSISARQVYHEVKK--FEKEITSNLSTYWLIFEL 295

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           IWR+F++++   + +       I     +EWN D   L+ W  G T +  ++A MR+++ 
Sbjct: 296 IWRDFFKYISLKHANKIFKLGGI-QNRSLEWNYDKQSLKDWIHGNTKYDFVNANMREISN 354

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+M NR R    SF  K+L  DWRIG  YF S L+D D+ SN G W + +  GND  P 
Sbjct: 355 TGFMSNRGRQNVNSFWAKELKQDWRIGAAYFESLLIDYDVHSNWGNWMYNSGVGND--PR 412

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWL 429
            R FN   Q +R+DP   +   WL
Sbjct: 413 DRKFNIKNQAERYDPNNEYQDLWL 436


>gi|163754253|ref|ZP_02161376.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
           algicida OT-1]
 gi|161326467|gb|EDP97793.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
           algicida OT-1]
          Length = 432

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 200/436 (45%), Gaps = 25/436 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIY 62
              LVW RNDLRI D  +L  A    ++ V+AV+   P  + +           ++ F+ 
Sbjct: 3   KTGLVWFRNDLRIHDQVSLVKAAKE-NSFVMAVYCFDPRHFEKDRFGFVKTGKYRAQFLI 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            ++  +Q  L++  I    H    F+   + +  Y    +VT ++  +++   EV     
Sbjct: 62  ETVSDLQNQLNELNIPLFVH----FEKPEKVVSEYVKIHKVTSVYSQKEWTSEEVAVSSA 117

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++K L + V      D  L  P  I     ++ +V+T FRK   +     +L ++     
Sbjct: 118 VKKALSNEVNWVESYDQFLFHPEDIPMTIDKIPQVFTVFRKKCEKYAQIRELETISKMPE 177

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKE--KVYYYVEQR 234
           +       + +P   D    A +        F  GE  AL  L+ +     K+ YY + R
Sbjct: 178 K-NRVTHLTKVPTLHDLGLPAFEQDTRTAFPFKGGETAALQRLQDYAWNTKKLSYYKKTR 236

Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + +     +S+ S +L+ G LSPR  ++ +K+   +++       +  + ELIWR+F+++
Sbjct: 237 NGLVGTAYSSKFSAWLANGSLSPRMIYHEVKKYESEII--KNQSTYWMIFELIWRDFFKY 294

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   + +       I   +  EWN DS L+Q W  G T  P ++A M +L   GWM NR 
Sbjct: 295 ISLKHGNNIFKLEGI-LHKAYEWNTDSKLIQQWIDGETAAPFVNANMLELKHTGWMSNRG 353

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R   AS+  K L +DWRIG  YF S L+D D+ SN G W + +  GND  P  R FN  +
Sbjct: 354 RQNVASYFAKTLELDWRIGAAYFESLLIDYDVHSNYGNWLYVSGVGND--PRNRTFNVKL 411

Query: 414 QGKRFDPQGTFIRHWL 429
           Q +R+D    F   WL
Sbjct: 412 QAERYDANKKFQNLWL 427


>gi|329902812|ref|ZP_08273260.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548607|gb|EGF33264.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 508

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 99/491 (20%), Positives = 196/491 (39%), Gaps = 33/491 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ +VW + DLR+ D+ AL  A       V+ +++  P  W    +S +   F+  SL 
Sbjct: 1   MTLSVVWFKRDLRLHDHAALTLAAARG--PVLCLYVIEPAMWAAQDVSNQHYQFLLESLS 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           ++  +L+++G            + ++ LD+   Q  +  LF + +   +   +RD  + +
Sbjct: 59  ELDAALARRGGCLHV----AVGEVVDILDALLRQSPIADLFAHEETGNDISYQRDLAVGR 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +   +              ++       K    +   + Q  +   + +         
Sbjct: 115 WCRTHQVGWHESAQF-----GVVRRLQDRDKWQRHWEAHVAQACLPIPVLAF------AA 163

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241
            P+TP+ +P          DP      G + A+ +L+ F  ++   Y      P  A   
Sbjct: 164 CPLTPAVLPSSDALGLAPDDPPLRQRGGRRQAVAVLQSFLLDRSGQYRGGISSPLSAPTA 223

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV---DLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
            S+LSPYL+ G LS R+  +  +++         + K+G   + + L W   +   +   
Sbjct: 224 CSRLSPYLAFGALSMREIVHATRKQLATMPATESRRKAGLTGFTSRLYWHCHFIQKLESE 283

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P++        +    E + +     A   G TG+P++DA +  L   GW++ R+R +  
Sbjct: 284 PALEYRNLHRGYDGLREGDWNQQHFDALVAGRTGWPLVDACVEMLRQTGWLNFRMRAMLV 343

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S     L + WR    +   Q LD +   +    Q    +G   +   RI+NP  Q    
Sbjct: 344 SVAAYPLWLHWRPVGLWLARQFLDYEPGIHWSQLQMQ--SGTTGINVPRIYNPIKQAHDH 401

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           DP G F+R WLP +  VP  ++  P     +        +  +  +P+VD ++A     +
Sbjct: 402 DPHGHFVRRWLPAMRKVPDAWLFEPWRMPAELQARYGVVVGHDIAMPLVDLEQATRLAKD 461

Query: 473 QYYAAKKQSLL 483
           + +  + Q  +
Sbjct: 462 KLFGLRAQPAV 472


>gi|260772995|ref|ZP_05881911.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio metschnikovii CIP 69.14]
 gi|260612134|gb|EEX37337.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio metschnikovii CIP 69.14]
          Length = 492

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 112/492 (22%), Positives = 196/492 (39%), Gaps = 32/492 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +TT  S+++VW + DLR++D+  L AA  +S    + V+   P        S R   F
Sbjct: 1   MMSTT--SINIVWFKRDLRLSDHPPLCAAL-DSGIPTLLVYFFEPMLLNDRHYSERHWRF 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRR 119
           ++ SL  + + L+  G        S    + + L +      +  L+ +++   +N   R
Sbjct: 58  VWQSLQDINQQLASFGHQILIANVS----AEQGLATLAAHFSIQGLYSHQEVGLVNTFER 113

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           D  ++     + I  S+  S          H     K +    +A +          + V
Sbjct: 114 DIAIQHWCTEQGI--SWHQSAYGAVRRAATHRQGWDKHWQAIMRAPLAMPNITTQGLISV 171

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            A  L       +  R  +   Q        GE  A   L  F + +   Y  Q   P++
Sbjct: 172 CATDLGLDNNVPSAWRRKEKGLQT------GGETLAKQTLEDFFQRRAKNYYFQISSPSL 225

Query: 240 Q--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
                S++SPYL+ G +S R+ +  L   +    ++      +  + L W   +      
Sbjct: 226 ARLSCSRMSPYLAWGNISLREMYQTLLSYWNAAGLR--RSLIALASRLHWHCHFIQKFES 283

Query: 298 YPSV---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +   C+ + + P   +     D+ LL+AWK G TG P++DA MR L   G+++ R+R
Sbjct: 284 ECEMEFRCVNRAYEPLLAQ-ACQPDTELLEAWKSGQTGIPLVDACMRCLYHTGYLNFRMR 342

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  S L   +  +WR G  +     LD +   +   +Q     G   +   RI+NP  Q
Sbjct: 343 AMLVSVLTHHMNQNWRAGVGHLAQLFLDFEPGIHYAQFQMQ--AGVTGINTIRIYNPIKQ 400

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACH 468
            +  D QG FIR W+PEL  VP   +  P            L  +  Y  P++D      
Sbjct: 401 AQEHDAQGVFIRQWVPELAEVPLSLLFEPWQMSPMEAMMYQLPADSRYLNPVIDVAACAK 460

Query: 469 HTLNQYYAAKKQ 480
              ++ +A +K+
Sbjct: 461 QARDRLWAWRKR 472


>gi|314933001|ref|ZP_07840367.1| putative deoxyribodipyrimidine photolyase [Staphylococcus caprae
           C87]
 gi|313654320|gb|EFS18076.1| putative deoxyribodipyrimidine photolyase [Staphylococcus caprae
           C87]
          Length = 457

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 139/474 (29%), Positives = 221/474 (46%), Gaps = 30/474 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           V L    R  +N        N +      +I   E++     +  + H+ Y +L +   +
Sbjct: 5   VILNRVFRTNNNPLFEYVYQNMEDIEKCYYIIPKEEF--SNEATMKRHYYYGTLQKFVNT 62

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLLEKRLQ 128
           L    I         F    + L  +  ++ + ++        Y   E       EK  +
Sbjct: 63  LYDHDI-------QPFLIDYDELIDFSKEKGINQVVIAGDIMSYHKEEYDILHQKEKFKK 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   +   +    P    N+  + YKV+T F K     L++  + +  +  I   G  
Sbjct: 116 EDISVTTIRANHYFKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRTVYNYDLKDIAKVGVK 175

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
           +   +   +            I E+NA +    F  + +  Y  +R+      TSQLS Y
Sbjct: 176 SKQKVKGNYSQSG--------ISEENAQYKWSDFLDKDIEDYDTKREYLPEVLTSQLSIY 227

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ GVL   Q +N L   +     K +    +++ ELI+REFY   M  YP       F 
Sbjct: 228 LAYGVLDIIQIFNDLLNSY----DKDEQNYEAFIRELIFREFYYVFMTQYPKTAHH-AFK 282

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              + + W+ +      W +G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL +D
Sbjct: 283 EKYQNLNWSYNEENFDLWTKGKTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFID 342

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W  GEEYF  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ +
Sbjct: 343 WTWGEEYFRQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKKALYIKKF 402

Query: 429 LPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +P LN+V  +Y+H  +    +      +L  +YP  IVDH ++  H ++++ A 
Sbjct: 403 IPILNDVDAKYLHDTYKHERQIKEQGIELGKDYPKQIVDHSESRDHVMSEFKAL 456


>gi|186686938|ref|YP_001870131.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
 gi|186469290|gb|ACC85090.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
          Length = 516

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 127/483 (26%), Positives = 212/483 (43%), Gaps = 22/483 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +HL+W R DLR+TDN+ +  +   +DA+V+  FI  P  +    +   +  F++ SL ++
Sbjct: 1   MHLLWFRRDLRLTDNE-IVTSSSGNDARVLPFFIIDPWFYTWADVGTARVRFLFESLEKL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEKRL 127
             +L +        + ++     E       +    KLF+NR  ++   + RDK +    
Sbjct: 60  NSNLQKLSSRLYLFEGNSTGIVQELTRQLTERGYKPKLFFNRDVQVEYGINRDKTIVDFY 119

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +        +    +   + L  A Q  +    +     Q+  +                
Sbjct: 120 KQ------LNLDYHIGLNNFLQSAEQRDEWVNEYYTYQRQSQYKTPAIINTPQITLNLPQ 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ---GTSQ 244
           +T   + + +   +      FP GE  A   L  F K++ Y Y  +   P +     TS 
Sbjct: 174 LTFEELKQKYHRFWAVEKVYFPGGETQAQAQLDSFLKKRYYGYHWKLSRPMLSQLGATSH 233

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYPSVC 302
           LSP+L+ G +S R  +   K     L  +PK+     ++ + L W + +   + F+P + 
Sbjct: 234 LSPHLTFGTISTRTVYQSTKALAEQLKTQPKAEFSLKAFRDRLRWHDSFTQRLYFHPEIA 293

Query: 303 MGKPFIPWTEKIEWNK----DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
               +  + +             L QAW+QG TGFP++DA+MRQL T+GWM+ R+R + A
Sbjct: 294 YTNRYREFDKLYTPETLSGAKQELYQAWQQGMTGFPLVDASMRQLQTMGWMNFRMRAMCA 353

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           +FL  +  V W  G +++M+ L+DGDLA +N  WQ  A   N     FRI+NP+      
Sbjct: 354 TFLTINCGVSWHHGAKHYMNYLVDGDLAIDNWQWQMQAGVTNPLSDTFRIYNPSKNIAEK 413

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           DP G FI HW+PEL       I       +K   + NYP  I+D  K            +
Sbjct: 414 DPLGEFIYHWIPELRGYSLLEIEQ-----EKYIETSNYPKVILDWSKTRKVNGKIVSDLR 468

Query: 479 KQS 481
           KQ+
Sbjct: 469 KQT 471


>gi|225010911|ref|ZP_03701378.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C]
 gi|225004958|gb|EEG42913.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C]
          Length = 427

 Score =  292 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 196/432 (45%), Gaps = 22/432 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ--HGISARQSHFIYASLLQ 67
            +VW  N+LR+ DN  L AAC N+  +V+ V+   PE+       I   ++ F   SLL 
Sbjct: 3   SIVWFTNNLRVADNPLLTAACKNNANEVVGVYCLNPEKLDGDFPKIGPFRAKFNVESLLD 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++SL +  I F         D  + L  Y  +  +  L++ + +   EV  +K +E ++
Sbjct: 63  LKRSLEELNIPFAIL----IGDPTKRLPEYINENNIGTLYFQKVWHEEEVLINKEIEAKI 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +   S  D  LL P  I     ++ KV+TPFRK +   L       +P      +  
Sbjct: 119 SPNIQLVSLYDQFLLGPEIIPFELYKLPKVFTPFRKKVEATLEVPAPLEVPAKQTNTSNT 178

Query: 188 VTPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRK--FCKEKVYYYVEQRD-I 236
               +   +     + +           F  GE+ A   +    F  + V  Y E R+ +
Sbjct: 179 PLFYSDALWASISKELLSIKIDSRSAFPFKGGEKAAQERIDHYFFSTDHVAQYKETRNGL 238

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
             +  +++LS +L+ G +S R  + +LK    +  +K     +  L EL+WREF++++  
Sbjct: 239 IGLDYSTKLSAWLANGCISARTIYYQLKAY--EKTVKANESTYWVLFELLWREFFKYVGL 296

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            + +       I   +      D  +   W  G T  P I+A M++L+  GWM NR R  
Sbjct: 297 KHKNDLFKSGGINH-KSFAQGNDPKVYNDWISGTTHSPFINANMKELSQTGWMSNRGRQN 355

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            AS+  K L  DWRIG  YF SQL+D D+ SN   W + +  GND  P  RIFNP  Q  
Sbjct: 356 VASYWSKTLDQDWRIGATYFESQLIDYDVDSNWANWMYTSGVGND--PRDRIFNPERQAD 413

Query: 417 RFDPQGTFIRHW 428
            +DPQ  F + W
Sbjct: 414 MYDPQKAFQKLW 425


>gi|317406109|gb|EFV86370.1| deoxyribodipyrimidine photo-lyase [Achromobacter xylosoxidans C54]
          Length = 277

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 136/280 (48%), Positives = 177/280 (63%), Gaps = 3/280 (1%)

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW 260
             AI  ++P GE  A   L  F    +  Y ++RD P++  TS LSPYL+ GVLSP Q  
Sbjct: 1   SDAIRALWPAGESAAGARLDAFADGVIDAYRDERDFPSLPATSCLSPYLAAGVLSPGQAL 60

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
                     L   K+GA +W+NEL+WREFY+HL+A  P++ M +P  P T  + W    
Sbjct: 61  RAALAANQGELESGKAGAATWINELLWREFYQHLLAACPALSMHQPMKPETAAVPWRDAP 120

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
             L+AW+QG TG PI+DAAMRQL  +GWMHNRLRM+TA FL K+LL+DWR+GE +FM+ L
Sbjct: 121 DDLRAWQQGRTGLPIVDAAMRQLLALGWMHNRLRMVTAMFLTKNLLIDWRLGEAWFMAHL 180

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           +DGDLA+NNGGWQW+ASTG DSVPYFR+FNP  Q ++FDP+G F+R WLPEL ++    I
Sbjct: 181 VDGDLAANNGGWQWSASTGADSVPYFRVFNPLSQSRKFDPRGVFLREWLPELAHLDDNAI 240

Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           H P            YP PIVD  ++    L  +    K 
Sbjct: 241 HDPSPMERAAA---GYPAPIVDLPQSRLRALEAFGNLPKA 277


>gi|171057933|ref|YP_001790282.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
 gi|170775378|gb|ACB33517.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
          Length = 493

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 105/483 (21%), Positives = 180/483 (37%), Gaps = 44/483 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW + DLR+TD+  L  A     A  +A+FI  P          R   ++   L 
Sbjct: 1   MSRAVVWFKRDLRVTDHAPLAEAARCDAA--LALFIIEPAWLDSPECHPRHVTWLLKCLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEK 125
            ++ +L+ +G+           +++E L +   +   T+LF + +        RD+ + +
Sbjct: 59  PLRDALAARGLPLLVRTG----EAVEVLAALRREFACTRLFSHEETGPGWSYARDRAVAR 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +   +  +       P   ++            +++ +    V+         A    
Sbjct: 115 WCRAHGVAWTEW-----PQTGVIRRLKDRRGWAGRWQQRMDAPCVRVPAG--WRAAPGFA 167

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
               P+++P   +          P GE  A  +L+ F   +   Y      P  A  G S
Sbjct: 168 PSTLPADLPTLRELGVATAPDTPPAGEAAAQQMLQSFLGGRALGYRRHLSSPLAAEAGCS 227

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNELIWREFYRHLMAFYPSVC 302
           +LS +L+ G LS R      +        +  +     +   L W   +   +   P++ 
Sbjct: 228 RLSEHLAFGTLSLRMLHQATEATLRATSDRELAYSLRGFAGRLRWHCHFMQKLEDEPAIE 287

Query: 303 MGK------PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                       P         D   LQAW +G TGFP++DA MRQL   GW++ R+R +
Sbjct: 288 WRNFARSADGLRPGDGSALQTADRERLQAWCEGRTGFPMVDACMRQLRATGWLNFRMRAM 347

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             SF    L + WR    +   Q LD +   +    Q    +G   +   RI++P  Q  
Sbjct: 348 LVSFAAYHLWLHWREPGLFLARQFLDFEPGIHWS--QMQMQSGTTGINTLRIYSPAKQAL 405

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             DPQG ++R W+PE                     S  YP PIVD + A      + Y 
Sbjct: 406 DHDPQGEYVRRWVPEFG-------------------SAAYPAPIVDERAAVAAAKQRLYG 446

Query: 477 AKK 479
            ++
Sbjct: 447 LRQ 449


>gi|109896482|ref|YP_659737.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c]
 gi|109698763|gb|ABG38683.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Pseudoalteromonas atlantica T6c]
          Length = 495

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 105/485 (21%), Positives = 197/485 (40%), Gaps = 31/485 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ DLR+ D++AL+AA       V+ +++  P          R   F++ S++ +
Sbjct: 6   INVVWLKRDLRLRDHQALFAAAQQ-PLPVVMMYLFEPSVIADPHYDVRHWRFVWQSIVDL 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRL 127
              L+             F+++         +  +  ++ +++  +    +RDK + + L
Sbjct: 65  NSQLADYNARIIVL----FEEAHSVFAQLMQRFHIAGVYSHQEIGLACTYKRDKAIARML 120

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I     +      G ++  A         + K +        L  +          
Sbjct: 121 DAEGISWHEYNH-----GGVIRGATHRRDWEQNWDKHMNAQCADTPLHEVNWLT---FAT 172

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
           +   +        ++   P F   GE+ A + L  F KE+   Y      P  +    S+
Sbjct: 173 LMTLDESEALPQEYKTQRPAFQLGGEKRAWYTLHHFLKERGKAYAYSVSSPIKSRTACSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G +S RQ +              +    ++ + L W   +         +   
Sbjct: 233 LSPYLAWGNISTRQVYQST--ASKKHKDGWQRAINAFRSRLHWHCHFIQKFESESDMEF- 289

Query: 305 KPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           +P        E+ +       LQAWK G TG PI+DA++R L+  G+++ R+R +  SFL
Sbjct: 290 RPVNKAYLAYEYEQGEQKDANLQAWKTGQTGIPIVDASIRCLHQTGYLNFRMRAMLVSFL 349

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              L +DWR G  +     LD +   +   +Q  AS         R++NP  Q +  DPQ
Sbjct: 350 CHHLNIDWREGAIHLAQLFLDFEPGIHYPQFQMQASVT--GTNLIRLYNPVKQSQDKDPQ 407

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FIR ++PE++++P   IH P           + +L   YP P++D ++      +  +
Sbjct: 408 GQFIRRFIPEISDLPDALIHTPWLLTPMECQIYEVELGRTYPHPMIDLEQTGKRARDTLW 467

Query: 476 AAKKQ 480
             +K+
Sbjct: 468 TFQKR 472


>gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4]
 gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4]
          Length = 694

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 128/549 (23%), Positives = 205/549 (37%), Gaps = 94/549 (17%)

Query: 10  HLVWLRNDLRITDNKALYAACH---------NSDAKVIAVFIATPEQWRQHGISARQSHF 60
            +VW R DLRI DN AL AA           + +  ++ ++I    + ++      +  F
Sbjct: 99  AIVWFRRDLRIHDNLALDAAMRAQMQLQKAGDEEMALLPIYIL--HRPKRQRCGPVRFQF 156

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++  + +S+++              D+ E L +      VT LF+        V RD
Sbjct: 157 LLEAIEDLARSIAKLDGRLLVLSG----DAEEVLRTVIAAWGVTDLFFEAGVAHYAVDRD 212

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLP 178
             +    +   V   +     L  P  I+  ++ Q    Y    +   +          P
Sbjct: 213 NRVRAIAKSLDVNVTTIRGVTLYNPHEIIRLNSGQAPTDYERLLEITEKMPQPTQPIPAP 272

Query: 179 VPAIRLTGPVTPSNIPRFFD----------------------------------YPFQAI 204
           V  +      T        D                                  +     
Sbjct: 273 VKLLNAACFSTDKLFSLLEDVCQQNPSEADVIAGVAGDVKKTESELFVAPPLTAFGLTPP 332

Query: 205 DPMFP--IGEQNALHILRKFCKE--KVYYYVEQRDIP---AIQGTSQLSPYLSIGVLSPR 257
            P  P   GE  A+  L  FC++  +V  + + +  P       T+ LS YLS G LS R
Sbjct: 333 TPHAPLIGGESAAMKRLDDFCEDERRVGQFEKPKTSPVSIDGPSTTTLSAYLSFGCLSAR 392

Query: 258 QCWNRLKEEFVDLLIKPKSGAF-SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316
           + + R+    +    +P      +   +L+WREF+   M    +    +   P  ++I+W
Sbjct: 393 EFFYRIMFIQLQYPHRPGLPTQVTLEGQLMWREFFYCYMCGTRNF-DSQELNPSCKQIDW 451

Query: 317 N-----------KDSHL---------------LQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
                        D                  LQ WK G TGFP IDA MRQ+N  GW H
Sbjct: 452 RLLNEYYVSHPEYDEQEPKKVTEADEKLAMRQLQCWKDGRTGFPWIDAVMRQINQEGWTH 511

Query: 351 NRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL +  L + W  G  YF  +++D D   N G W W +++   +  Y R+ 
Sbjct: 512 HAGRHAVACFLTRGVLYISWLRGATYFQEKMIDLDWPINVGNWLWVSASCFFT-NYRRMA 570

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDH 463
           +P+   +R+D QG FIR ++P L N+P +Y+  P     K        +  NYP PIVD 
Sbjct: 571 SPSTFPQRWDQQGQFIRKYIPALRNMPDKYVFEPWKAPLKVQRDADCLIGKNYPFPIVDS 630

Query: 464 KKACHHTLN 472
           K A    + 
Sbjct: 631 KLAMSRCIA 639


>gi|218296790|ref|ZP_03497496.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23]
 gi|218242879|gb|EED09413.1| Deoxyribodipyrimidine photo-lyase [Thermus aquaticus Y51MC23]
          Length = 417

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 205/467 (43%), Gaps = 54/467 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++LVW R DLR+ D+ AL  A   S   ++ + +  P   R    S R+  +   ++  +
Sbjct: 1   MNLVWHRGDLRLKDHPALLQAL--SQGPLVGLVVLDPNNLRT---SPRRRAWFLENVRAL 55

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + +  ++G      +   +    E +     + +   ++  + Y      RD   E  L 
Sbjct: 56  RAAYRERGGALWVVEGPPW----EVVPQVARRLKAKAVYALKSYTPYGRYRDARTEAAL- 110

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                      +L  P  I     + ++VYTPF     Q L         +P     G +
Sbjct: 111 ------GVPLHLLPAPHLIPPDLPRAHRVYTPF-SRNFQGLDPPLPAPEALPQAPEEGEI 163

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
              +             P+   GE+ A   L  F + K+  Y  +RD    +G S+LSPY
Sbjct: 164 PQEDPGL----------PLPEPGERAARARLHAFLEAKLPRYPLERDRLDGEGGSRLSPY 213

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
            ++GVLSPR+          + L +   GA  W+ EL+WR+F  HL+  +P +   +   
Sbjct: 214 FALGVLSPREAAW-------EALRRGGEGARKWVAELLWRDFSYHLLYHFPEMA-QRALD 265

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              E + W +D  L QAW  G TG P++DAAMR+L   G++ NR RM  A F VK LL+ 
Sbjct: 266 ARFEALPWTEDEELFQAWYLGKTGVPLVDAAMRELQATGFLSNRARMAVAQFAVKYLLLP 325

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W+  EE F   LLDGD A N  GWQWA   G D+ PYFR+FN   QG+R DP G ++R +
Sbjct: 326 WQRAEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNLVEQGRRHDPDGAWLRRF 385

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
            PE  +   +                    P+VD  +A    L    
Sbjct: 386 APEYPSYEPK-------------------DPVVDLAEARRRYLALAK 413


>gi|149195753|ref|ZP_01872810.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155]
 gi|149141215|gb|EDM29611.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155]
          Length = 481

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 116/487 (23%), Positives = 195/487 (40%), Gaps = 34/487 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ DLR+ D+  L AA   S+   + ++   P       +S    +FIY SL+++
Sbjct: 4   INVVWLKRDLRLNDHACL-AAAEASELPYLIMYCFEPSLMNAPDVSENHLNFIYLSLMEM 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKRL 127
           Q  L+               D+ + L     + +++ LF ++++      +RD+ +    
Sbjct: 63  QTKLAPFNRPLYILHA----DATQALGYIQKKYQISTLFAHQEHGTARTWKRDRQVIDFC 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I       +      I             +      ++V+      P    +   P
Sbjct: 119 WQEEIEL-----LEAEHSGIQRGIQNRDHWDKAWFSWHKTDIVRNSYSISPFNFDKSLFP 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
                   F  YP Q    M   GE  A H L+ F  E+   Y      P+   +   +L
Sbjct: 174 AALQFKKTFKTYPKQ----MQAPGENTAHHYLKSFLAERGKNYHRFISKPSESRKSCGRL 229

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM---AFYPSVC 302
           SPYL+ G +S RQ +  +K          K      L  L WR  +         Y  +C
Sbjct: 230 SPYLAWGNVSSRQVYQLVKA--SPKYKDNKRAYSGLLTRLKWRSHFIQKFEVECSYEYLC 287

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           + K +    E +  + ++  ++AWK G TG+P++DA MR L+  GW++ R+R +  SF  
Sbjct: 288 LNKGY----ELMSLDFNAEFIEAWKDGKTGYPLVDACMRCLHATGWINFRMRAMLTSFFC 343

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
             L  DWR G  +     LD +   +   +Q     G   +   RI+NP  Q    DP+G
Sbjct: 344 HHLAQDWRDGVYHLAKLFLDYEPGIHFPQFQMQ--AGTTGINTVRIYNPIKQSMDNDPEG 401

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQYYA 476
            FIR W+PEL ++    IH P                  YP PI+D K       ++ + 
Sbjct: 402 EFIRQWIPELKDLSNDEIHEPWKIEIMEAKMKGYTNLHLYPAPIIDIKDTYSLARDRIWG 461

Query: 477 AKKQSLL 483
            +  +L+
Sbjct: 462 LRSHALV 468


>gi|297539501|ref|YP_003675270.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301]
 gi|297258848|gb|ADI30693.1| Deoxyribodipyrimidine photo-lyase [Methylotenera sp. 301]
          Length = 528

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 110/494 (22%), Positives = 197/494 (39%), Gaps = 38/494 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           V++VW + DLRI D+ AL+ AC      V+ +F      W     + +   F+   L+ +
Sbjct: 5   VYIVWFKRDLRIQDHAALFEACELGQ--VLPIFTWDSSVWNGGDYATQHQMFVEECLVSL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRL 127
           +++L   G+             IE L+   +  R+  L  + +   N   + DK +    
Sbjct: 63  RRNLQTIGLSLL----EVRGGIIEVLNHIAMFYRIGGLHSHEETGNNNTYQLDKAVASWC 118

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   V    +  + ++         L+   ++T   +   +   Q            L  
Sbjct: 119 KAQNVNWHEYPHNGVV-------RRLKNRDIWTAVWEK--RMSAQTMPLPTQAKMATLPL 169

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
            + P+N      Y           G + A  +L  F   +   Y      P  +    S+
Sbjct: 170 DILPNNDVSHLRYTQADKPFRQKGGREEASRVLHTFLNGRGSRYRGGISSPLSSESAGSR 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-------SGAFSWLNELIWREFYRHLMAF 297
           LSPYL+ GVLS R+    L+++   +   P        +G  S+ + L W   +   +  
Sbjct: 230 LSPYLAWGVLSMREVVQNLRQKKSSIQASPSTYPNGLLAGLASFESRLHWHCHFMQKLES 289

Query: 298 YPSV---CMGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            P++    +   F  + ++     +  + L AWK G TG+P++DA M  L   GW++ R+
Sbjct: 290 EPAIEYENLHPAFNGFRDQSYASAELQNRLTAWKAGQTGWPLVDACMAMLRDTGWINFRM 349

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R +  S     L + WR    +   + LD +   +    Q    +G   +   RI+NP  
Sbjct: 350 RAMLMSTASYLLWLHWRETGLHLAREFLDYEPGIHWSQVQMQ--SGTTGINTLRIYNPVK 407

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC 467
           Q K  DP+G F+R WLP L NVP  +I  P    +         + ++YP P+V+  +A 
Sbjct: 408 QAKDQDPEGIFVRRWLPALRNVPNTWIFQPWLMPESLQLEYGCRIGIDYPAPLVNIDQAF 467

Query: 468 HHTLNQYYAAKKQS 481
                ++   +  S
Sbjct: 468 KLAKTKFSQLRMNS 481


>gi|15341192|gb|AAK94666.1| cryptochrome 2a [Xenopus laevis]
          Length = 501

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/437 (24%), Positives = 173/437 (39%), Gaps = 38/437 (8%)

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
           SL          +        +       +  V++L +    E     RD ++ K  +  
Sbjct: 2   SLRTLNSRLFVVRG----QPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAKEA 57

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRLT--- 185
            V     +   L      L+  +++     P      Q ++ + ++   P P++      
Sbjct: 58  GVEVVVENSHTLYD----LDRIIELNGHSPPLTYKRFQAIISRMEIPRRPAPSVTRQQME 113

Query: 186 --------GPVTPSNIPRFFDYPF---QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                          +P   +  F        ++P GE  AL  L +  + K +    +R
Sbjct: 114 ACRAEIKRNHDETYGVPSLEELGFHRENKGSAIWPGGETEALARLDRHLERKAWVANYER 173

Query: 235 DIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
                       + LSPYL  G LS +  + RL+E +  +  K      S   +L+WREF
Sbjct: 174 PRMNANSLLASPTGLSPYLRFGCLSCKLFYYRLQELYRKVK-KNNPPPLSLFGQLLWREF 232

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +       P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H
Sbjct: 233 FYTAATNNPKFDQMEG-NPICVQIPWDKNPKALAKWAEGKTGFPWIDAIMTQLRQEGWIH 291

Query: 351 NRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           +  R   A FL + DL   W  G + F   LLD D + N G W W  S       +F  +
Sbjct: 292 HLARHAVACFLTRGDLWNSWECGVKVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCY 350

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDH 463
            P   G+R DP G FIR +LP L   P++YI+ P S  +      K  + ++YP PIV+H
Sbjct: 351 CPVGFGRRTDPNGDFIRRYLPVLKAFPSRYIYEPWSAPESVQKQAKCIIGIDYPKPIVNH 410

Query: 464 KKACHHTLNQYYAAKKQ 480
            +A    + +     +Q
Sbjct: 411 AEASSMNIERMKQTYQQ 427


>gi|159043774|ref|YP_001532568.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
 gi|157911534|gb|ABV92967.1| deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae DFL 12]
          Length = 514

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 112/476 (23%), Positives = 182/476 (38%), Gaps = 26/476 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW + DLR+ D+ AL  A       V+ V+I  PE W+   +SARQ  F    +  + +
Sbjct: 8   LVWFKRDLRVADHPALARAAALG--PVLPVYIVEPEYWQLRDVSARQWAFTRECVADLSR 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQH 129
            L+  G   +        +++  L+       +T +  + +        RD+ +    + 
Sbjct: 66  ELAALGAPLRIETG----EAVAVLERLRAAHGITLMISHEEIGNGWTYARDRAVADWARA 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           + +        L   G +     +     T  R      +    LR +        G + 
Sbjct: 122 QGVAWEE----LAQSGVVRRLNGRDGWARTRDRFMAQPQVAVPVLRGVDG----GGGALP 173

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247
            +      D P          G   AL +L  F  E+   Y      P    +  S+LSP
Sbjct: 174 DAAALGLADDPCPG---RQRGGRDEALSLLGGFLTERGRTYRAAMANPLDGAEACSRLSP 230

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSVCMG 304
           +L++G LS R+          ++            S+   L WR+ +   +   P +   
Sbjct: 231 HLALGTLSGREAVQAAAMRKAEVKGTRDGWIGAMKSFEARLAWRDHFMQKLEDAPRLEHA 290

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                +        D   L AW +G TG P +DA MR L   GW++ R R +  +     
Sbjct: 291 CLHSAYEGLRPAVPDPVRLGAWAKGETGLPFVDACMRSLIATGWLNFRARAMLVAVASYH 350

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR           D +   +    Q    +G   +   RI+NP  QG   DP+G F
Sbjct: 351 LWLDWRASGTILGRYFTDFEPGIHWPQVQMQ--SGTTGMNTVRIYNPVKQGHDNDPEGVF 408

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            R WLPEL  VP +Y+  P  W   +  L+  YP PIV+ K A     ++ +A ++
Sbjct: 409 TRRWLPELAEVPDRYLQEPWRWEGADSVLNRTYPAPIVEPKAAAAAARDKVWAVRR 464


>gi|289741509|gb|ADD19502.1| deoxyribodipyrimidine photolyase/cryptochrome [Glossina morsitans
           morsitans]
          Length = 536

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 124/516 (24%), Positives = 205/516 (39%), Gaps = 45/516 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDA--KVIAVFIATPEQWRQHGISARQSHFIYAS 64
           MSV+++W R+ LR+ DN AL  A  + +    ++ +FI   E          +  F+  S
Sbjct: 1   MSVNVLWFRHGLRLHDNPALLEALADREKGIALVPIFIFDGESAGTKCTGYNRLRFLLDS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +      +       Q     +             + KL   +  E    RRD  ++
Sbjct: 61  LRDLDDQFRCQRGRLYTFQG----NPTTIFKELHECFGINKLCVEQDCEPIWNRRDNDVK 116

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYT------------PFRKALIQNLVQ 171
                  I         L  P  ++     +  +              P R A   N   
Sbjct: 117 VLCNELGIKWVEKISHTLWNPRQVIQTNGGIPPLTYQMFLHTVQVIGLPPRPAENANWKG 176

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKE-- 225
            D+ ++    +      T    P  F+   + ++ +    +  GE  AL +L +  K   
Sbjct: 177 VDILNINETILEKLPGFTEIPQPEQFNVFAEDLNRLALVKWKGGETEALILLEERLKVEG 236

Query: 226 ---KVYYYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----- 276
              K  YY+  +  P I  T + +SP+L  G LS R+ +  + + F D+    K      
Sbjct: 237 EAFKRGYYLPNQANPNILETPKSMSPHLRFGCLSVRKFYWAVHDLFEDVQQHVKMFGFQI 296

Query: 277 -GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFP 334
                   +LIWRE++  +    P     +        I W   +   L+ WK G TGFP
Sbjct: 297 MSGAHITGQLIWREYFYTMSVNNPYYDRMEE-NEICLNIPWAPVNDEQLENWKLGKTGFP 355

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           ++DAAMRQL   GW+H+ LR   A+FL +  L  +W  G ++F+  LLD D +   G W 
Sbjct: 356 LVDAAMRQLLAEGWIHHTLRNTVATFLTRGGLWFNWEHGLQHFLKYLLDADWSVCAGNWM 415

Query: 394 WAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL----- 447
           W +S+  + +     +  P    KR DP G +I+ ++PEL +VP +YIH P         
Sbjct: 416 WVSSSAFERLLDSSLVTCPLAMAKRLDPFGQYIKQYVPELAHVPKEYIHEPWRMPLSEQK 475

Query: 448 -DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
             K  +  +YP  I+D  KA    +      ++  +
Sbjct: 476 RSKCIIGEHYPKRIIDFVKAAESNMTAMRNLRQDLM 511


>gi|149926570|ref|ZP_01914831.1| deoxyribodipyrimidine photolyase family protein [Limnobacter sp.
           MED105]
 gi|149824933|gb|EDM84147.1| deoxyribodipyrimidine photolyase family protein [Limnobacter sp.
           MED105]
          Length = 559

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 115/517 (22%), Positives = 205/517 (39%), Gaps = 51/517 (9%)

Query: 7   MSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M +HLVWL+ DLR++D+   +AA      S+  V+A++   P+  RQ   + +   F   
Sbjct: 1   MHLHLVWLKKDLRLSDHAPWHAATKAAKESNGCVVALYCLEPKLIRQPDSAPQHFEFARE 60

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKL 122
           SL ++ + L ++ +     +  N   +++ +   C Q  +   + +++        RDK 
Sbjct: 61  SLQELAEQLPEQ-VPLLLAKA-NAPVALQTMALCCQQISI---YSHQETGNWASFVRDKE 115

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF--------------RKALIQ 167
           ++   + H +    F ++ ++      +   +++                          
Sbjct: 116 VKAWCESHSIAWLEFQNNAVVRKLKNRDEWGKLWLDTMRKPVLPVPDFSELPQATWFDFP 175

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKE 225
              Q  L    +P ++L   + P        YP    D       G Q A   L +F  E
Sbjct: 176 QNFQQQLEVNGLPCVQLNRSLWPQWAQYVHFYPKHLTDKTLRQRGGRQQAQRCLSEFLSE 235

Query: 226 KVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD---------LLIKP 274
           +   Y  +   P  A    S+LSPYL+ GV+S R+    L +                + 
Sbjct: 236 RGMNYRFEMSSPLSAESACSRLSPYLAFGVISIREMLEALSQARQQLTESSLLPKAQTQW 295

Query: 275 KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI-----PWTEKIEWNKDSHLLQAWKQG 329
           K    S+ + L W   +   +   P +                ++   ++   L  W +G
Sbjct: 296 KQSLKSFESRLHWHCHFIQKLESEPELEFRSAHRGLNAMRNFAELSPEENQKALA-WIEG 354

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TGFP++DA MR L   GW++ R+R +  +F    L +DWR        + LD +   + 
Sbjct: 355 RTGFPMVDACMRMLRATGWVNFRMRAMLVAFASYQLWLDWRHTAPMLAREFLDYEPGIHY 414

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD- 448
             +Q    +G   +   RI+NP  Q K  DPQG FIR W+PEL N+P  +I  P +    
Sbjct: 415 PQFQMQ--SGVTGINTLRIYNPVKQAKDHDPQGVFIRRWIPELKNIPDPWIGEPWNTPQL 472

Query: 449 -----KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
                   +  +YP P+VD   A     +     +++
Sbjct: 473 IQQECGCIVGEDYPWPVVDPDTAISKARSNITEFRQR 509


>gi|321466446|gb|EFX77441.1| CRY-D [Daphnia pulex]
          Length = 525

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 121/503 (24%), Positives = 196/503 (38%), Gaps = 38/503 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++++W R  LRI DN AL +A  NS    IA+F+               + F+   L  +
Sbjct: 1   MNVLWFRRGLRIHDNPALLSALENSKDF-IALFVFDTTFQDPGYKPYHMNGFLLECLHDL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            +SL   G      Q       +E        + + KL + +  E     RD   +    
Sbjct: 60  NESLESVGTKLHVFQG----CPLEVFRHLHNIKPINKLCFIQDCEPIFHERDIAAKNLCS 115

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---- 183
              +         L  P  I+        +        +   V    + +  P  +    
Sbjct: 116 ELDIEVYEHVAHTLWDPMDIIASNGGTPPLTYE-MFVHVAMSVGDPPKPVADPEWKGVKF 174

Query: 184 LTGPVTPSNIPRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKE-----K 226
           LT     SN    F            + P          GE NAL       +      +
Sbjct: 175 LTLEPFESNRFTLFGGVPTLSQIGVPENPVGCRGRRIFGGETNALKHFAIRLQAEETAFR 234

Query: 227 VYYYVEQRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
             +Y   +  P + G    LS  +S+G +S R  + R+ E F  +             ++
Sbjct: 235 SGFYQPNQARPDLLGPPLSLSAAISVGAISVRLFYWRIHEIFDKVNRGNPPAWLGITGQI 294

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           IWR+++  +    P     +   P   +I W ++    + WK G TG+P IDA MRQLN 
Sbjct: 295 IWRDYFYAMSRMNPKFDK-EVDNPICLQIPWVENEEFFEKWKNGQTGYPFIDAGMRQLNQ 353

Query: 346 IGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            GWMH+ +R   A FL + DL ++W IG EY  +QL+D D + N+G W W +S+  + + 
Sbjct: 354 EGWMHHSVRNAVAMFLTRGDLWLNWDIGAEYMANQLVDSDWSVNSGNWMWVSSSAFERLL 413

Query: 405 YFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457
                 N  + GKR +P G +IR ++PEL N   +YIH P              +  +YP
Sbjct: 414 DCSVCINSVLYGKRLEPSGDYIRRYVPELANFEFEYIHEPWKAPIDIQRTANCIIGQDYP 473

Query: 458 LPIVDHKKACHHTLNQYYAAKKQ 480
             +V H++     L      +++
Sbjct: 474 AQMVVHEEVLPRNLEWMKEFRQK 496


>gi|51944883|gb|AAU14170.1| cryptochrome [Bactrocera tryoni]
          Length = 547

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 119/518 (22%), Positives = 203/518 (39%), Gaps = 45/518 (8%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNS--DAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           A   +++W R+ LR+ DN AL  A  +      +I +FI   E      +   +  F+  
Sbjct: 2   AKRANVMWFRHGLRLHDNPALLEAISDKTEGIALIPLFIFDGESAGTKTVGYNRMSFLLN 61

Query: 64  SLLQVQKSLSQ-KGIVFQYHQCSNF-DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           SL ++ K L   +G      +   F  +            R+ K+ + +  E    RRD 
Sbjct: 62  SLAEIDKQLKAIRGASDIAGKLYLFQGNPTTVFRRLNEYYRLNKICFEQDCEPIWNRRDD 121

Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +        +         L  P ++++   ++  +        ++ ++ A  R +  P
Sbjct: 122 SVRALCNDLDIEAVEKVSHTLWDPRTVISTNGRIPPLTYQMFLHTVE-IIGAPPRPVEDP 180

Query: 181 AIRLTGPV-----------------TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
                  +                 TP +   F D         +  GEQ AL  L +  
Sbjct: 181 EWDGVEFLKLTDNMLMELNAFWQFPTPEDFNIFPDNISYVAKVKWRGGEQQALLHLAERL 240

Query: 224 KEKVYYYVEQRDIPA------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275
           K +   +     +P       ++    +S +L  G LS R+ +  + + F  + I+    
Sbjct: 241 KVEERAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWSVHDLFKHVQIEAFYH 300

Query: 276 ----SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-NKDSHLLQAWKQGY 330
               +G      +LIWRE++  +    P     +        I W   +   LQ+W+ G 
Sbjct: 301 RIHMAGGEHITGQLIWREYFYTMSVNNPYYDRMEG-NEICLNIPWAPPNQEQLQSWRSGQ 359

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNN 389
           TGFP+IDAAMRQL   GW+H+ LR   A+FL +  L   W  G  +F+  LLD D +   
Sbjct: 360 TGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLKYLLDADWSVCA 419

Query: 390 GGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
           G W W +S+  + +     +  P    KR DP+G +IR ++PEL  +P +YIH P     
Sbjct: 420 GNWMWVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELAKIPQEYIHEPWRMPQ 479

Query: 449 KND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +        + + YP  IVD  K            ++ 
Sbjct: 480 EMQENYECVIGVQYPERIVDLAKVSKRNTLAXQTLRQS 517


>gi|298370358|ref|ZP_06981674.1| deoxyribodipyrimidine photolyase [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281818|gb|EFI23307.1| deoxyribodipyrimidine photolyase [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 473

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 139/475 (29%), Positives = 207/475 (43%), Gaps = 34/475 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           T     LVW R +LR+TDN AL AA       V  VF            + RQ+ F+ AS
Sbjct: 29  TMQKNTLVWFRRNLRLTDNAALAAAVRRG-LPVAGVF-------AADAANPRQAAFLRAS 80

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
             ++ ++L+++GI     Q +  D     +     +     +  +     +E  RD  + 
Sbjct: 81  AAELHRALAERGIPLFVAQEAETD-----IPRLAAELDAAVVVADEGCMADETARDNRIW 135

Query: 125 KRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L  +    +  +D        I++   + Y  + P+R+A ++   Q      P  ++ 
Sbjct: 136 RVLDAQGRAFERVNDGAAFARAEIMDEHGRPYFEFAPYRQAWLRAFAQRFADRRPSESLP 195

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +        +P F   P  A        GE        +F  + +  Y      PA +GT
Sbjct: 196 VGFQTAFGILPPFPALPETAPQEWRQQGGEAAGRRQWARFAAD-IGNYPLMSGFPAKKGT 254

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
            ++  YL+ G LSPR+                K GA  WL+ L+ R+F+R +M   P   
Sbjct: 255 GRVGAYLAAGCLSPREL----------AQAAAKRGAAQWLDNLVRRDFFRQVMFHRPEAA 304

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +   P    I+W     +L  W+QG TGFP+IDAAMR LN  GW+H  LR   A+FL 
Sbjct: 305 -AEALRPEYRGIKWPGGQDVLSRWQQGQTGFPLIDAAMRSLNATGWLHPALRAAAAAFLC 363

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           + LL DWR G  +F   L D D ASN G WQ A   G   +      NP +Q ++ DP G
Sbjct: 364 RILLADWRHGAAWFARCLTDYDPASNTGNWQEA--AGVFGLFSGGAANPVLQAQQLDPDG 421

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           TFIR ++PEL ++P   +HAP       D +  YP P+ D    C      Y A 
Sbjct: 422 TFIRRYVPELAHLPKDVVHAPWLARASVD-THGYPPPMAD----CARQGRAYAAL 471


>gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera]
          Length = 633

 Score =  289 bits (741), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 121/511 (23%), Positives = 186/511 (36%), Gaps = 91/511 (17%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--------- 52
            +  + S  L+W R  LRI DN AL  A   S+  V  VF+  P                
Sbjct: 146 PSMASGSGSLMWFRKGLRIHDNPALQHAAMESNC-VYPVFVIDPYFMEPDPNAFSPGSSR 204

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
               +  F+  SL+ +  SL Q G      +    +  I+ L                  
Sbjct: 205 AGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIQCLKKNY-------------- 250

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQM----YKVYTPFRKALIQN 168
                             +   S     L     I+          Y+ +          
Sbjct: 251 -------------ASAAGIEVFSPVSHTLFDSADIIQKNGGRPPLSYQSFLKLAGQPSWA 297

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCK 224
                     +P +   G    SN+P   +  ++ I       F  GE  AL  LR+  +
Sbjct: 298 SSPLSTTLSWLPPVGDVGTCEISNVPTVKELGYEEIGQDELTPFKGGESEALKRLRESIR 357

Query: 225 EKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           +K +   + + +  P+      T+ LSPYL  G LS R  +  L + + ++  +  S   
Sbjct: 358 DKDWVANFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCLTDVYKNVK-RHTSPPV 416

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           S + +L+WR+F+  +    P+    K      ++I WN D  LL AW++  TG+P IDA 
Sbjct: 417 SLVGQLLWRDFFYTVGFGTPNFDRMKGNR-ICKQIPWNDDDELLAAWREARTGYPWIDAI 475

Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           M QL   GWMH+  R   A FL + DL V W  G + F   L+D D A NNG W W + +
Sbjct: 476 MVQLRKWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCS 535

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDL 452
                P                             ++P +YI+ P +         K  +
Sbjct: 536 SFFYQP-----------------------------DMPKEYIYEPWTAPPSIQXKAKCII 566

Query: 453 SLNYPLPIVDHKKA---CHHTLNQYYAAKKQ 480
             +YP P+V H  A   C   L + YA  K+
Sbjct: 567 GKDYPKPVVCHDSAXKECKRKLAEAYALNKR 597


>gi|284506737|dbj|BAI67362.1| cryptochrome [Bactrocera cucurbitae]
          Length = 547

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 117/514 (22%), Positives = 200/514 (38%), Gaps = 45/514 (8%)

Query: 10  HLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W R+ LR+ DN AL  A    +    +I +FI   E      +   +  F+  SL  
Sbjct: 6   NVLWFRHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLAD 65

Query: 68  VQKSLSQ-KGIVFQYHQCSNF-DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + K L   +G      +   F  +            R+ K+ + +  E    RRD  +  
Sbjct: 66  IDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDDSVRS 125

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +         L  P ++++    +  +        ++ ++    R +  P    
Sbjct: 126 LCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVE-IIGVPPRPVEDPDWDG 184

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------------MFPIGEQNALHILRKFCKEKV 227
              +  ++        F                       +  GEQ AL  L +  K + 
Sbjct: 185 VEFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALLHLDERLKVEE 244

Query: 228 YYYVEQRDIPA------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------PK 275
             +     +P       ++    +S +L  G LS R+ + R+ + F  + I+        
Sbjct: 245 RAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWRVHDLFKHVQIEALRQRVHM 304

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFP 334
           +G      +LIWRE++  +    P     +        I W   +   LQ+W+ G TGFP
Sbjct: 305 AGGEHITGQLIWREYFYTMSVNNPYYDRMEG-NAICLNIPWAAPNKEQLQSWRSGQTGFP 363

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           +IDAAMRQL   GW+H+ LR   A+FL +  L   W  G   F+  LLD D +   G W 
Sbjct: 364 LIDAAMRQLLAEGWLHHTLRNTVATFLTRXALWQSWEHGLRXFLXYLLDADWSVCAGNWM 423

Query: 394 WAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD---- 448
           W +S+  + +     +  P    KR DP+G +IR ++PEL NVP +YIH P         
Sbjct: 424 WVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRXYVPELANVPQEYIHEPWRMPQELQE 483

Query: 449 --KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             +  + + YP  IVD  K     ++     ++ 
Sbjct: 484 NCECVIGVQYPERIVDLAKVSKRNVHAMQTLRQS 517


>gi|124003106|ref|ZP_01687957.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
 gi|123991756|gb|EAY31164.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
          Length = 545

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 111/487 (22%), Positives = 200/487 (41%), Gaps = 28/487 (5%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
            T+M +++VW + DLR+ D+  L AA       V+ V++  P   +    + R   F+Y 
Sbjct: 34  DTSM-INVVWFKRDLRLEDHAPLKAAIE-VGLPVLLVYVFEPSLQQSPDWNIRHWQFVYQ 91

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKL 122
           S+  +   L    +           +  +  +      ++ K+F +++  I     RD+ 
Sbjct: 92  SIEDLNFELEDYQVKLHCFHA----EVPDVFEYILKTHQIDKVFSHQETGIRLTYDRDRQ 147

Query: 123 LEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +++  + + +  + F+ + +        +     + +  F K  +     A L+++P   
Sbjct: 148 MQQFFEQKDIEWQEFEQNGIQR---GRKNRRGWAQDWQIFMKEPLATPNLAQLKAMPYEV 204

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI-- 239
                        +   Y         P+G ++A   L+ F K+ +  Y  Q   PA+  
Sbjct: 205 TDFAFLFDYVTGQKIHLY----SKNYQPVGMRSAQKYLKAFGKKCIVQYTTQHKQPALSN 260

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           Q  S LSPYL+ G LS RQ +   ++  +D   +      ++L+ L              
Sbjct: 261 QSNSHLSPYLAWGNLSVRQVYQHCQQLMIDSPHRAN--FETYLHHLRMHCQCIQKFE-ME 317

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +       ++E N  + LL+AWK G TGFP++DA+MR +   G+++ ++R +  S
Sbjct: 318 DYLEFEAGNEAYLQLEQNHKNDLLEAWKNGQTGFPLVDASMRCIRQTGYLNFQMRSLIVS 377

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FL   L   W  G  Y   Q LD +   +   +Q  A   +      +I NP    K+ D
Sbjct: 378 FLTHHLWQSWHTGVHYLGQQFLDYEPGVHFVRFQAQAGAVDTHK--VKILNPIKVSKKCD 435

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQ 473
           P+  FI+ W+PEL N+P   IH             K  +  +YP PI++      H    
Sbjct: 436 PKAQFIKKWVPELKNIPAGLIHDLSKMTTIEQIFYKCTIGQDYPAPIININATHPHAKAA 495

Query: 474 YYAAKKQ 480
             A KK 
Sbjct: 496 LEALKKN 502


>gi|297563254|ref|YP_003682228.1| deoxyribodipyrimidine photo-lyase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847702|gb|ADH69722.1| Deoxyribodipyrimidine photo-lyase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 435

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 136/457 (29%), Positives = 214/457 (46%), Gaps = 29/457 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            S  +V    DLR+ D+ AL AA        + VF+  P    +      ++  +  +L 
Sbjct: 2   ASATIVLFTQDLRVHDHPALAAAVER-PGPTLPVFVLDPAVAGR--SVRNRAALLADALA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++ +L ++G      +     D++  + +         +           RR +     
Sbjct: 59  DLRAALRERGADLVLLRG----DTVREVAALARASGADTVHVTDGVSSLAARRARR---L 111

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               +  ++F    ++PPG +       YKV+TP+ KA      +  +   P   + L  
Sbjct: 112 RATGLTVRAFPGLTVVPPGEVTPAGGDHYKVFTPYWKAWEAAAWRDPV--APPDRVVLPE 169

Query: 187 PVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            V P  +P        A+    P  GE+ A   L  +    +  Y ++ D      TS L
Sbjct: 170 GVRPGELPGRGTDGLGALAEDLPRGGERAARERLDAWLSSGLAAYPDRHDDLPGAATSHL 229

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           S  L +G LSP +           L   P +G  +++ +L WR+F+  + A +P+V + +
Sbjct: 230 SADLRLGCLSPLE---------AALAASPLAGGEAFVRQLAWRDFHHQVTAAFPAVNV-R 279

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            + P   K  W +D   L AWK+G TG P++DA MRQL   G++HNR RMITA+FL + L
Sbjct: 280 DYRPRDRK--WREDPDALDAWKRGRTGVPVVDAGMRQLLREGFVHNRARMITAAFLTRTL 337

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            V WR G ++F + L+DGD+A+N G WQW A TGND+ P  R FNP  Q +RFDP+G ++
Sbjct: 338 RVHWREGADHFHAHLVDGDVANNYGNWQWVAGTGNDTRP-NRAFNPLRQARRFDPEGVYV 396

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           R +LPEL ++P    H P     +      YP PI D
Sbjct: 397 RRYLPELADLPGGRAHTPWR---EEHPPPGYPAPIAD 430


>gi|109896483|ref|YP_659738.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c]
 gi|109698764|gb|ABG38684.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Pseudoalteromonas atlantica T6c]
          Length = 445

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 117/438 (26%), Positives = 195/438 (44%), Gaps = 23/438 (5%)

Query: 1   MKATTAM--SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGI 53
           MK  ++      + W R+DLR+ DN AL A     D +++ VFI  P  +     +   +
Sbjct: 1   MKKLSSALPKRGIFWFRHDLRLHDNPALVALSEQVD-ELLCVFIIDPRWFKSSHFQSAHM 59

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
             ++  F+  SL ++Q+ L ++G      +       +E LD+         +       
Sbjct: 60  GDKRWAFLQQSLSELQRHLQEQGQQLFVLEGET----LEVLDALIGSYTPDIVASGMHPG 115

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
           + E ++ + +++   + +  +  +   L  P ++      +   +TPFRK +    V   
Sbjct: 116 VYERQQWQRVKQGNPNTLFIQE-NGHSLFQPATLPFEIEYLPASFTPFRKRVEDLQVAVA 174

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK--FCKEKVYYYV 231
           L +              S        P +AI   F  GE  AL  L    F    +  Y 
Sbjct: 175 LPAPTALPPAPDLAWLSSKNVN---PPKKAIGLAFTGGEDAALAQLEYTLFTSHNIKNYK 231

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           + R+ +     +S+LSP+L+ G LS RQ +  L+    +   +     +    EL+WRE+
Sbjct: 232 QTRNGLDGWDYSSKLSPWLANGCLSVRQVFTELRRY--ESEYEKNDSTYWLYFELLWREY 289

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           ++  +  Y S          T  +     +     W QG T +PI++A M+QLN  G+M 
Sbjct: 290 FQWHLFKYQSKLFQFSGTQDTRPLTTFV-ALRFAMWCQGETPYPIVNACMKQLNHTGYMS 348

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R + AS LV +L VDWR G  YF  QL+D D+ASN G WQ+ +  G D   + R F+
Sbjct: 349 NRGRQLVASCLVNELGVDWRFGAAYFEQQLVDFDVASNWGNWQYLSGVGVDPRGHRR-FD 407

Query: 411 PTIQGKRFDPQGTFIRHW 428
              Q +++DP G F+R W
Sbjct: 408 LAKQAQQYDPNGEFVRQW 425


>gi|294339498|emb|CAZ87857.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As]
          Length = 493

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 112/483 (23%), Positives = 182/483 (37%), Gaps = 47/483 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ LVW + DLR+ D+ AL+A         +A+F+  PE        A+   F    +  
Sbjct: 3   TLALVWFKRDLRVQDHAALHA--AAQCDAALALFVMEPEWIASPECDAQHVQFAADCVSA 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEKR 126
           +Q+SL+  G+           D  +  +    + R T LF + +        RDK +   
Sbjct: 61  LQESLAGLGLRLLVR----VGDVPQVFEDIRREVRFTHLFSHEETGPGWTYARDKRVAHW 116

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + + +          P   ++            +     Q  + A    +P      + 
Sbjct: 117 CREQGVIWQEW-----PQNGVVRRLRDRAGWAARW-----QRRMDAPQLPVPQALRDASK 166

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
           P+   + P   D    A  PM   G   AL  L  F   +   Y      P  A +G S+
Sbjct: 167 PLAAGDFPALRDLRLPAARPMSAAGTAAALSTLHSFLDTRGAQYRRDLSSPLTAERGCSR 226

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHLMAF 297
           LS +L+ G LS RQ     ++    L    ++ A S       +   L W   +   +  
Sbjct: 227 LSAHLAFGTLSMRQVHQATEQRIRALQASGEAPARSMAYHLRGFAGRLRWHCHFMQKLED 286

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +        +    E   +    +AW  G TGFP++DA MR LN  GW++ R+R + 
Sbjct: 287 EPGIEFHNFARAYDGLREPEFNPAYFEAWCSGNTGFPMVDACMRCLNATGWINFRMRAML 346

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SF    L + WR    +   Q LD +   +    Q    +G   +   R+++P  Q   
Sbjct: 347 VSFAAYHLWLHWREPGLHLARQFLDFEPGIHWS--QMQMQSGTTGINTLRVYSPAKQQAD 404

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            DPQG FIR W+PE              W         YP PIV+ + A     ++ YA 
Sbjct: 405 HDPQGEFIRQWVPE--------------WGTSA-----YPPPIVNERSAVKQAKDRIYAI 445

Query: 478 KKQ 480
           ++ 
Sbjct: 446 RQS 448


>gi|119490469|ref|ZP_01622930.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106]
 gi|119453940|gb|EAW35095.1| deoxyribodipyrimidine photolyase [Lyngbya sp. PCC 8106]
          Length = 512

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 126/487 (25%), Positives = 212/487 (43%), Gaps = 32/487 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + ++W R DLR+ DN  +  A    D +++  FI  P  ++Q  I   +  F++ SL  +
Sbjct: 1   MQILWFRRDLRLIDNDIVAQAAAT-DEEILPCFIIDPWFYQQPDIGGMRVQFLFESLACL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT-KLFYNRQYEI-NEVRRDKLLEKR 126
             SL   G      + ++ +  I+ L    L+     +L +NR  ++    +RD  + + 
Sbjct: 60  DGSLRDLGSRLYLFEGNSVEV-IQTLTGELLELGYHPRLVFNRDIQVDYGRKRDHQVIEF 118

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            Q   + C    ++ L   G          +    +   L Q       +          
Sbjct: 119 YQRLGLNCYLGLNNFLQIEGE------NREQWMNEYYADLRQPQHPIPTKLKTPEIPLNL 172

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ---GT 242
             +T   + + +++  Q    +F  GE  A   L  + K +   Y  +   P I    GT
Sbjct: 173 TQLTFDELQQKYNFNSQNS-ALFTGGEVEAQKTLNSWLKSRYNGYHWKLSRPQIATLGGT 231

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--GAFSWLNELIWREFYRHLMAFYPS 300
           S LS +L+ G +S RQ + + K    +L    K+     S+ N L WR+     + ++P 
Sbjct: 232 SHLSAHLAFGTISTRQVYQQTKARANELKENAKAQFALKSFRNCLRWRDSAIQRLYYFPE 291

Query: 301 VCMGKPFIPWTEKIEWNKDSHL-------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +     + P  +K  W  D  L        QAW+QG TGFP++DA+M+QL ++GWM+ R+
Sbjct: 292 LAYQNCY-PEFDK--WYSDGELEGEKLEYFQAWQQGKTGFPLVDASMKQLQSMGWMNFRM 348

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + A+FL     V W  G  ++M+ L+DGD+A N+  WQ  A   N     FRI+NPT 
Sbjct: 349 RAMCANFLTVICGVSWHHGARHYMNYLVDGDIAINHWQWQAQAGVTNPLSSTFRIYNPTK 408

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQ 473
                DP+  F+R W+PEL +   + I        +      YP P++D  +        
Sbjct: 409 NLTEKDPKFEFVRDWIPELRDCTDEQI-----LSGEIGELSGYPEPMLDWYEMRKINGKV 463

Query: 474 YYAAKKQ 480
               +KQ
Sbjct: 464 VSELRKQ 470


>gi|284506739|dbj|BAI67363.1| cryptochrome [Bactrocera cucurbitae]
          Length = 547

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 114/514 (22%), Positives = 197/514 (38%), Gaps = 45/514 (8%)

Query: 10  HLVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +++W  + LR+ DN AL  A    +    +I +FI   E      +   +  F+  SL  
Sbjct: 6   NVLWFXHGLRLHDNPALLEAISDKSEGIALIPLFIFDGESAGTKTVGYNRMSFLLNSLAD 65

Query: 68  VQKSLSQ-KGIVFQYHQCSNF-DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + K L   +G      +   F  +            R+ K+ + +  E    RRD  +  
Sbjct: 66  IDKQLKAIRGASDISGKLYLFQGNPATVFRRLSEYYRLNKICFEQDCEPIWNRRDDSVRS 125

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +         L  P ++++    +  +        ++ ++    R +  P    
Sbjct: 126 LCNDLDIEAVEKVSHTLWDPRTVISTNGGIPPLTYQMFLHTVE-IIGVPPRPVEDPDWDG 184

Query: 185 TGPVTPSNIPRFFDYPFQAIDP-----------------MFPIGEQNALHILRKFCKEKV 227
              +  ++        F                       +  GEQ AL  L +  K + 
Sbjct: 185 VEFLKLTDNMLMELNAFWRFPTPEDFNVYPDNVSYVAKVKWHGGEQQALLHLDERLKVEE 244

Query: 228 YYYVEQRDIPA------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK------PK 275
             +     +P       ++    +S +L  G LS R+ +  + + F  + I+        
Sbjct: 245 RAFKNGYYLPNQANPNILESPKSMSAHLRFGCLSVRRFYWSVHDLFKHVQIEALRQRVHM 304

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFP 334
           +G      +LIWRE++  +    P     +        I W   +   LQ+W+ G TGFP
Sbjct: 305 AGGEHITGQLIWREYFYTMSVNNPYYDRMEG-NAICLNIPWAAPNKEQLQSWRSGQTGFP 363

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           +IDAAMRQL   GW+H+ LR   A+FL +  L   W  G  +F+  LLD D +   G W 
Sbjct: 364 LIDAAMRQLLAEGWLHHTLRNTVATFLTRGALWQSWEHGLRHFLKYLLDADWSVCAGNWM 423

Query: 394 WAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD---- 448
           W +S+  + +     +  P    KR DP+G +IR ++PEL NVP +YIH P         
Sbjct: 424 WVSSSAFERLLDSSLVSCPIAFSKRLDPKGEYIRQYVPELANVPQEYIHEPWRMPQELQE 483

Query: 449 --KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             +  + + YP  IVD        +      ++ 
Sbjct: 484 NCECVIGVQYPERIVDLANVSKRNVXAMQTLRQS 517


>gi|312883173|ref|ZP_07742904.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369333|gb|EFP96854.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 487

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 120/489 (24%), Positives = 201/489 (41%), Gaps = 36/489 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
             ++L+WL+ DLR+TD++ALYAA  +    +I  ++  P        S R   F+Y SL+
Sbjct: 2   KKINLLWLKRDLRLTDHEALYAATQSGRPTLIF-YLFEPFLLDNPHYSERHWRFVYQSLV 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125
            + + L              F      L++ C    V  L+  ++  +     RD  + +
Sbjct: 61  DMNRRLEPLNRSITIATTDIFHF----LEAVCSTYDVEMLYSYQEIGLKVTFNRDLEVAQ 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAI 182
             +   I          P G+++  A    K    + K +   L    L+    LP    
Sbjct: 117 YCKQHTIAWQE-----FPTGAVIRGARSRDKWDKNWAKTMRSPLATVHLKKEHLLPYSEK 171

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQ 240
            L+ P    N  R      Q        G   A   L  F + +   Y +    P  + +
Sbjct: 172 TLSLPCHIPNAWRSKTQGMQT------GGSDLAWKTLDDFFERRGKNYYKSLSSPTLSRK 225

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S+LSPYL+ G +S R+ + R+ E +     +    A S  + L W   +         
Sbjct: 226 ACSRLSPYLAWGNISLREVYQRVLEHWNTKGFRRSLTALS--SRLHWHCHFIQKFESECD 283

Query: 301 V---CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +   C+ + + P       + +   LQAWK G TG P++DA MR L+  G+++ R+R + 
Sbjct: 284 MEFRCLNRAYEPLLSSSS-STEFDKLQAWKSGQTGVPLVDACMRCLHHTGYINFRMRAML 342

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SFL   +  DWR G E+  S  LD +   +   +Q     G   +   RI+NP  Q + 
Sbjct: 343 VSFLTHHMGFDWRYGVEHLASLFLDFEPGIHYAQFQMQ--AGVTGINTIRIYNPIKQAQE 400

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTL 471
            DP G FI  W+PEL  +P   +++P        +  +      Y  PI+D + A     
Sbjct: 401 HDPDGQFILRWVPELKGIPIPLLYSPSQITPMEAVLYDLDSESVYLNPIIDIEHAGRLAR 460

Query: 472 NQYYAAKKQ 480
           ++ +  KK+
Sbjct: 461 DRLWTWKKR 469


>gi|159487721|ref|XP_001701871.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
 gi|158281090|gb|EDP06846.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
          Length = 469

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 113/484 (23%), Positives = 193/484 (39%), Gaps = 39/484 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDA----KVIAVFIATPEQ-----WRQH 51
           M         ++W RNDLR+ DN  ++ A          +V+ V++  P       W   
Sbjct: 1   MATAGGGQRLVLWFRNDLRLHDNYIVHEAAQRVKRGEASEVLPVYVYDPRFFAATPWGAL 60

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK-LFYNR 110
              A ++ FI   +  +++ L   G               + L +          +    
Sbjct: 61  KTGAHRAKFIQECVADLRQRLQGLGSDLVV----AVGQPEQLLPALLEGGGAAPLVLTAE 116

Query: 111 QYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
           +    E   D  + + ++        +    +     +      +  V+TPF++ + +  
Sbjct: 117 EVTSEEAAVDVAVARAIKPAGGKLLRYWGHTMYHYDDL-----DLPDVFTPFKEKVEKRA 171

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKE 225
                 +  + A        P               P     F  GE  AL  L+ +  +
Sbjct: 172 ALPLPPAPRLGATAAAALAAPLPGWEQLPPAPPVTHPKAVLDFKGGETAALARLKYYLWD 231

Query: 226 KV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
                 Y + R+ +     +++ +P+L+ G +SPR+ ++ +++             +  +
Sbjct: 232 SDLLSTYFDTRNGMLGGDYSTKFAPWLAQGCISPRKIFHEIRKYESQRF--SNKSTYWVI 289

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            ELIWR+F+R     + +    +        + WN D  L   W++G TG P++DA MR+
Sbjct: 290 FELIWRDFFRFFALKHGNRIFFETGTSGL-PLVWNPDPELWARWREGRTGLPLVDANMRE 348

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G+M NR R   AS+LV DL VDWR G +YF   LLD D+ SN G W  AA      
Sbjct: 349 LAATGFMSNRGRQNVASYLVLDLGVDWRRGADYFEEVLLDYDVTSNWGNWVAAAGLTGGR 408

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456
           V +   FN   Q K +DP G +++ W PEL NVP   +H P     +        + ++Y
Sbjct: 409 VNH---FNIAKQSKDYDPTGEYVKTWCPELKNVPVTKVHEPWLMSKEEQERSGCRIGVDY 465

Query: 457 PLPI 460
           P PI
Sbjct: 466 PNPI 469


>gi|323499198|ref|ZP_08104176.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
 gi|323315831|gb|EGA68864.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
          Length = 488

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 108/484 (22%), Positives = 197/484 (40%), Gaps = 32/484 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S+++VWL+ DLR+TD++ L  A    D  VI +++  P        S R   F+  SL+ 
Sbjct: 3   SINIVWLKRDLRLTDHQPLQHALEQ-DLPVILLYVFEPLLLNDPHYSERHWRFVSHSLVD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           + + L+  G      +     + +    +      +  ++ +++  ++   +RDK +   
Sbjct: 62  MNQQLAPYGGKVSILRG----EILSCFKAIQSLYSIANIYSHQEIGLSCTYQRDKQVAHW 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            Q   I          P G+++  A    +    +       +++A +  L + A  LT 
Sbjct: 118 TQAHNIPWIES-----PQGAVIRGAKNRKEWDKHW-----DRIMRAPIAHLDLNANWLTL 167

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244
                       +  +        G   A   L  F + +   Y      P+      ++
Sbjct: 168 EHLKDYTLTLPKHWLKKAKGQQTGGTTLAWKTLDDFFQRRGKEYYRSISSPSASRYACTR 227

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--- 301
           LSPYL+ G +S R+ + +L   +     +      +  + L W   +        ++   
Sbjct: 228 LSPYLAWGNISLRELYQQLLGHWQVKGFR--RSLVALSSRLHWHCHFIQKFESESAMEYR 285

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           C+ + +     +     D   L AWKQG TG P+IDA MR L+  G+++ R+R +  SFL
Sbjct: 286 CVNQAYDALLSQ-SCLSDRDKLNAWKQGQTGIPLIDACMRCLHHTGYINFRMRAMLVSFL 344

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              + +DWR G  +     LD +   +   +Q     G       RI+NPT Q +  D +
Sbjct: 345 THHMNMDWREGVTHLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 402

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN----DLSLN--YPLPIVDHKKACHHTLNQYY 475
           G FI+ WLPEL +VPT  +  P            + L+  Y  PI+D         ++ +
Sbjct: 403 GVFIKQWLPELKHVPTPLLFEPWKMTQMEAVMYQIELDSCYLSPIIDLATRAKEARDRLW 462

Query: 476 AAKK 479
           + +K
Sbjct: 463 SWRK 466


>gi|301097563|ref|XP_002897876.1| cryptochrome, putative [Phytophthora infestans T30-4]
 gi|262106624|gb|EEY64676.1| cryptochrome, putative [Phytophthora infestans T30-4]
          Length = 656

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 140/535 (26%), Positives = 220/535 (41%), Gaps = 75/535 (14%)

Query: 11  LVWLRNDLRITDNKALYAAC---HNSDAKV-------IAVFIATPEQWRQHGISARQSHF 60
           LVW R DLR+ DN A+ AA       + K+       I ++I    + +       +  F
Sbjct: 92  LVWFRRDLRLHDNLAISAALDWIKQEEEKIPGRKVVFIPLYIV--HRPKIMLCGVNRFQF 149

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  S+  +  +L+ +G      +     D ++ L       R++ LF++   E   + RD
Sbjct: 150 LLESVSDLADALAARGSRLVVARG----DGVQVLRRLLPAWRISHLFFDAASEPFAIDRD 205

Query: 121 -KLLEKRLQHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQA------ 172
            + +    Q  V         L    +++     +  K YT F +AL             
Sbjct: 206 NRAVALARQLGVETHVTHGYTLYDLDAVIAGNNGEPPKTYTAFLRALAMQPKPPKPLPTP 265

Query: 173 ------------------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGE 212
                             D     +    + GP     +P   D+ F A +  P    GE
Sbjct: 266 EKVPAPVYLPSELYQQVIDYWQNRLKPDSIAGPEQQFTLPEVTDFGFVAPERHPFIYGGE 325

Query: 213 QNALHILRKFCKE--KVYYYVEQRDIPAI----QGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           Q AL ILR +C+   +V  + + +  PA       T+ LSPYL  G +SPR   + ++  
Sbjct: 326 QIALGILRDYCRNEGRVVKFEKPKTSPAQTTPSASTTSLSPYLYFGSISPRTFLHHVRGI 385

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN--------- 317
                    +   S   +L+WREF+             +   P   +I+W          
Sbjct: 386 QEHHAKALSATPVSLDGQLLWREFFHCHGRANAYFDKMEE-SPTCLQIDWRWHTIPEREE 444

Query: 318 ---KDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDW 369
               D  L     QAW  G TGFP IDA M QL   GWMH+  R   A FL + DL + W
Sbjct: 445 DMTDDDKLARSQFQAWIDGQTGFPWIDAIMIQLKEEGWMHHLARHSVACFLTRGDLYISW 504

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             G E F  +L+D D + N G W W +++   S  YFR+++P+  GK++DP+G FIR ++
Sbjct: 505 VRGLEVFQERLIDHDWSINCGNWLWLSASYFFSA-YFRVYSPSTFGKKWDPEGLFIRKYV 563

Query: 430 PELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P L+ +P +YI+ P              +  +YP PIVDHK A   ++     + 
Sbjct: 564 PALSKMPVKYIYEPWKAPMTVQHAAGCLIGKDYPFPIVDHKIAMRRSMAGMKKSY 618


>gi|110637463|ref|YP_677670.1| deoxyribodipyrimidine photo-lyase type I [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110280144|gb|ABG58330.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 434

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 115/439 (26%), Positives = 188/439 (42%), Gaps = 27/439 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFI 61
           M   +VW + DLR+ DN+ L  A   SD ++I V+    + ++            ++ F+
Sbjct: 1   MKRSIVWFKTDLRLHDNETLVRAIEQSD-EIIPVYCLDEDHFKITPFGFQKTGNFRAQFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +  +L + G      +     +    L     Q    K+F  R+    E + + 
Sbjct: 60  LESLNDLDTNLRKLGSGLIVVRGKPETE----LYKIVKQYEAFKVFAKREVAYEEQQTEA 115

Query: 122 LLEKRLQHRV-ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +EK +       +SF  S L     +      + +V+T FRK + +   ++ +RS+   
Sbjct: 116 RVEKEIWKLGCTFESFSTSTLYHAQDLPFSIKDIPEVFTNFRKKVEK---ESSIRSVFQK 172

Query: 181 AIRLTGPVTPS-NIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKV--YYYV 231
              +  P  P   +P       Q +         F  GE      L  +  E     +Y 
Sbjct: 173 PAHIKSPAMPQLRLPTVKGLGLQPVIQDPRAVMKFTGGESEGCKRLTSYLFETQLISHYK 232

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             RD +     +++ SP+L++G LSPR+ +  LK+   +         +  + EL+WR++
Sbjct: 233 NTRDGMIGSDYSTKFSPWLALGCLSPREIYTELKKY--ESRFSANESTYWLIFELLWRDY 290

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +R +M  +         I  +      +D+ +L  W  G TG   IDA M +L   G+M 
Sbjct: 291 FRFMMKKHKHQFFLYSGIKDSANASGLQDTAILSQWINGKTGNDFIDANMLELTHTGFMS 350

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R   AS+L  DL +DWR G  YF  QL+D D+ SN G W + A  GND     R FN
Sbjct: 351 NRGRQNAASYLCNDLGIDWRYGAAYFEQQLIDYDVCSNWGNWAYLAGVGNDPRGK-RNFN 409

Query: 411 PTIQGKRFDPQGTFIRHWL 429
              Q + +DP+  F   WL
Sbjct: 410 IEKQAEEYDPKKLFRNLWL 428


>gi|255020504|ref|ZP_05292568.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970024|gb|EET27522.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
           51756]
          Length = 493

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 111/481 (23%), Positives = 184/481 (38%), Gaps = 47/481 (9%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            LVW + DLR TD+  L AA     A  + +++   E         +   FI  SLL+++
Sbjct: 5   ALVWFKRDLRCTDHAPLAAAARCRSA--VGLYVLEDEWLGAPEWDPQHWEFIRQSLLELR 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRLQ 128
            +L+ +G+     + +        L         T+L  + +        RD+ +    +
Sbjct: 63  DNLAARGMPLLLRRGA----MPLVLAQLWRDYPFTELLSHEETGSAWTYARDRRVAAWCR 118

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            R I          P   ++    Q       +     +  +     +        T P+
Sbjct: 119 ERGIAWRQW-----PQFGVVRPLAQRDGWAEAW-----ERFMARPPLAAVGQLPGTTTPL 168

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLS 246
              +IP        A  P+ P GE  A   L  F  E+   Y+     P  A +G S+LS
Sbjct: 169 DGGDIPSLDALGLPAARPIPPAGEAAATRTLESFIAERGSRYLHTLSSPLLAERGCSRLS 228

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA-------FSWLNELIWREFYRHLMAFYP 299
            +L+ G +S RQ   R ++   +L  +  + A         +L+ L W   +   +   P
Sbjct: 229 AHLAYGTVSMRQVVQRTRQRLRELRKEGSAEAGERARHLRGFLSRLHWHCHFIQKLEDEP 288

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +         +    E +       AW +G TGFP +DA MR L   GW++ R+R +  S
Sbjct: 289 ASEFHNFSRSYDGLREDDWSEERFLAWAEGRTGFPFVDACMRCLRATGWINFRMRAMLVS 348

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F    L + WR    +   Q LD +   +    Q    +G   +   RI++P  Q    D
Sbjct: 349 FASYHLWLHWRGTGLFLARQFLDFEPGIHWS--QMQMQSGTTGINTLRIYSPNKQWADQD 406

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           P+G F+R WLPE                     S +YP PIVD ++A      + +A ++
Sbjct: 407 PRGEFVRRWLPEWG-------------------SPDYPPPIVDEQRAARIAKERIWARRR 447

Query: 480 Q 480
           Q
Sbjct: 448 Q 448


>gi|223042734|ref|ZP_03612782.1| putative deoxyribodipyrimidine photolyase [Staphylococcus capitis
           SK14]
 gi|222443588|gb|EEE49685.1| putative deoxyribodipyrimidine photolyase [Staphylococcus capitis
           SK14]
          Length = 457

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 139/475 (29%), Positives = 227/475 (47%), Gaps = 32/475 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVI-AVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           V L    R TDN  L+   + +   +    +I   E +     +  + ++ Y +L +   
Sbjct: 5   VILNRVFR-TDNNPLFEYVYQNMEDIDQCYYIIPKEDFG--NEAKMKRNYYYGTLQKFVH 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLLEKRL 127
           +L +  I         F    + L  +  ++ + ++        Y   E       E+  
Sbjct: 62  ALYENDI-------QPFLMDYDELVDFFKEKGINEVVIAGDIMSYHKEEYDILHQREQFK 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           +  +   +   +    P    N+  + YKV+T F K     L++  + +  +  +   G 
Sbjct: 115 KEDISVTTIRANHYFKPSKTRNNKGEPYKVFTSFYKKWRPYLMKRTVYNYDIKDLAKVGV 174

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
            +   +    DY    I       E+ A +    F  + +  Y   R+      TSQLS 
Sbjct: 175 KSKQKLK--GDYSQSGIS------EETAQYKWSDFLDKDIEDYDSNREYLPEVLTSQLSI 226

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL+ GVL   Q +N L + +     K +    +++ ELI+REFY  LM  YP       F
Sbjct: 227 YLAYGVLDIIQIFNDLLDGY----DKDEQNYEAFIRELIFREFYYVLMTQYPKTA-HIAF 281

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
               + + W+ +      WK+G TGFPIIDAAM +LNT G+MHNR+RM+ + FL KDL +
Sbjct: 282 KEKYQNLNWSYNEDNFDLWKKGMTGFPIIDAAMGELNTTGYMHNRMRMVVSQFLTKDLFI 341

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           DW  GEEYF  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  +I+ 
Sbjct: 342 DWTWGEEYFRQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPVRQSERFDKKALYIKK 401

Query: 428 WLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           ++P LN+V  +Y+H  +    +      +L  +YP  +V+H ++  H ++++ A 
Sbjct: 402 FIPTLNDVDAKYLHNTYKHERQIKEQGIELGKDYPKQMVNHSESRDHVMSEFKAM 456


>gi|302844305|ref|XP_002953693.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
           nagariensis]
 gi|300261102|gb|EFJ45317.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
           nagariensis]
          Length = 1025

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 123/541 (22%), Positives = 202/541 (37%), Gaps = 90/541 (16%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDA----KVIAVFIATPE-----QWRQH 51
           M A       ++W RNDLR+ DN  ++ A          +V+ V+   P       W   
Sbjct: 1   MAAAGCGKRVVLWFRNDLRLHDNYIVHDAVQRVKRGEASEVLPVYCFDPRVYGTTPWGHF 60

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL-QQRVTKLFYNR 110
              A ++ F+   +  ++  L   G          F    E L          + +    
Sbjct: 61  KTGAHRAAFLLECVTDLKSRLRDVGSDLLV----AFGKPEEVLPGLLEGSSGPSLVLTAE 116

Query: 111 QYEINEVRRDKLLEKRLQHR-----------------VICKSFDDSVLLPPGSIL----- 148
           +    E R D  + + L+ +                      F    +     +      
Sbjct: 117 EVTSEETRTDVAVARALKQQRRPQADAAAAAGGGSGSAKLLRFWGHTMYHIDDLTQPPEG 176

Query: 149 -------NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF---- 197
                       M  V+TPFR+ + +         LP        P              
Sbjct: 177 GGKAAFAPGMKDMPDVFTPFREKVEKRCPVRKDLPLPQKGDLPLPPTEALPAAAAAALAA 236

Query: 198 --------------------DYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRD 235
                                +P   +D  F  GE  AL  LR +  +      Y + R+
Sbjct: 237 APPTWEQLPYPPAARPPPPTKHPKAVLD--FKGGETAALARLRYYLWDSDLIASYFDTRN 294

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            +     +++ +P+L+ G +SPR+ ++ +++   +   +     +  + ELIWR+++R  
Sbjct: 295 GMLGGDYSTKFAPWLAAGCISPRKIYHEIRKY--EAQRQSNKSTYWVIFELIWRDYFRFF 352

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              + +    +        + WN D+ L   W+ G TG P++DA MR+L   G+M NR R
Sbjct: 353 ALKHGNRIFFETGTSGL-PLVWNPDADLWHRWRDGRTGLPLVDANMRELAATGFMSNRGR 411

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI------ 408
              AS+LV DL +DWR G +YF SQLLD D+ SN G W  AA      + +F I      
Sbjct: 412 QNLASYLVLDLGIDWRRGADYFESQLLDYDVTSNWGNWVAAAGLAGGRINHFNIAKQASD 471

Query: 409 ---FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459
              F      K +DPQG ++R W PEL +VP   +H P     +        + ++YP P
Sbjct: 472 VGAFRIGGGSKDYDPQGDYVRTWCPELRHVPVGKVHEPWLMSKEEQEKAGCRIGVDYPNP 531

Query: 460 I 460
           I
Sbjct: 532 I 532



 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 101/426 (23%), Positives = 164/426 (38%), Gaps = 76/426 (17%)

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHR-----------------VICKSFDDSVLLPPGSIL 148
           +    +    E R D  + + L+ +                      F    +     + 
Sbjct: 556 VLTAEEVTSEETRTDVAVARALKQQRRPQADAAAAAGGGSGSAKLLRFWGHTMYHIDDLT 615

Query: 149 ------------NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
                            M  V+TPFR+ + +         LP        P         
Sbjct: 616 QPPEGGGKAAFAPGMKDMPDVFTPFREKVEKRFPVRKDLPLPQKGDLPLPPTEALPAAAA 675

Query: 197 F------------------------DYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYY 230
                                     +P   +D  F  GE  AL  LR +  +      Y
Sbjct: 676 AALAAAPPTWEQLPYPPAARPPPPTKHPKAVLD--FKGGETAALARLRYYLWDSDLIASY 733

Query: 231 VEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            + R+ +     +++ +P+L+ G +SPR+ ++ +++   +   +     +  + ELIWR+
Sbjct: 734 FDTRNGMLGGDYSTKFAPWLAAGCISPRKIYHEIRKY--EAQRQSNKSTYWVIFELIWRD 791

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           ++R     + +    +        + WN D  L   W+ G TG P++DA MR+L   G+M
Sbjct: 792 YFRFFALKHGNRIFFETGTSGL-PLVWNPDPDLWHRWRDGRTGLPLVDANMRELAATGFM 850

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI- 408
            NR R   AS+LV DL +DWR G +YF SQLLD D+ SN G W  AA      + +F I 
Sbjct: 851 SNRGRQNVASYLVLDLGIDWRRGADYFESQLLDYDVTSNWGNWVAAAGLAGGRINHFNIA 910

Query: 409 --------FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSL 454
                   F      K +DPQG ++R W PEL +VP   +H P     +        + +
Sbjct: 911 KQASDVGAFRIGGGSKDYDPQGDYVRTWCPELRHVPVGKVHEPWLMSKEEQEKAGCRIGV 970

Query: 455 NYPLPI 460
           +YP PI
Sbjct: 971 DYPNPI 976


>gi|291303346|ref|YP_003514624.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM
           44728]
 gi|290572566|gb|ADD45531.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM
           44728]
          Length = 436

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 126/426 (29%), Positives = 189/426 (44%), Gaps = 29/426 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
            M   +V    DLRI DN AL  A  ++D  V+ +++A         +   Q  F+  SL
Sbjct: 36  TMRTIVVLFTRDLRIRDNPALALASRHADT-VVPLYVAD----DSPPLPPNQRRFLVESL 90

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++SL + G      +     D +E     C       +     Y     R  + L +
Sbjct: 91  TDLRESLRRLGGDLLVRRG----DPVEQTLKLCRLLATDGIGMAEDYGPAARRLRQRLAE 146

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             +  RV  + F    ++ PG++        YKV+TP+ ++      + +  +    AIR
Sbjct: 147 AAEAERVGLRLFPGVTIVEPGAVRPTTGADHYKVFTPYLRSWSATPWRPEHEAP--QAIR 204

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           L   VT  +              +   GE   L     +  ++   Y    D  A   T+
Sbjct: 205 LPADVTGDDPASVIGPVEGGSSDVVDGGETAGLRRWDSWI-DREPDYPAIHDDLAADDTT 263

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LS YL  G +SP                       + + +L WR+FY  ++  +P +  
Sbjct: 264 RLSGYLRFGCVSPLVV------------AADPRTPEALVRQLCWRDFYHQVLHGFPRLAT 311

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              + P      W  D   L+AW+ G TG P++DA MRQL T GWMHNR RM+ AS+L K
Sbjct: 312 DN-YRPGARD-AWVDDEPALRAWQDGETGVPLVDAGMRQLRTQGWMHNRARMVAASYLTK 369

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR G  +F   L+D D+A+N G WQW A TGNDS PY R FNP  Q +R+DP+  
Sbjct: 370 DLGIDWRHGAAWFDRWLVDADVANNYGNWQWTAGTGNDSRPYRR-FNPARQAQRYDPRHE 428

Query: 424 FIRHWL 429
           +   WL
Sbjct: 429 YRDRWL 434


>gi|117927361|ref|YP_871912.1| deoxyribodipyrimidine photo-lyase type I [Acidothermus
           cellulolyticus 11B]
 gi|117647824|gb|ABK51926.1| deoxyribodipyrimidine photo-lyase type I [Acidothermus
           cellulolyticus 11B]
          Length = 497

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 135/487 (27%), Positives = 210/487 (43%), Gaps = 52/487 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD-AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           + W R DLR+ D+ AL AA   +    ++ +F+  P      G    +  F+ + L ++ 
Sbjct: 34  VYWFRRDLRLADSPALVAAARAAGAEPIVPLFVVDPR--AGRGAGPNRWQFLASCLEELD 91

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128
           + L     + +             +  +  +     +  + +      RRD+++ +RL  
Sbjct: 92  RQLGGALTLRRAPGVGGAAAVAAIVAGFAAEVGAEIVVASGETTPYGRRRDRIVAERLAA 151

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                   D    + PG +       Y+V++ F +A +   V+A       PA R    V
Sbjct: 152 EDRRLLLLDTPYCVAPGRLRRTGGHPYRVFSAFYRAWLAEPVEAP---YERPAARFDALV 208

Query: 189 TPSNIPRF---------------FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           +                       D P      +   GE+ A+  L +FC+  +  Y   
Sbjct: 209 SDGEATDLVDAAGRGYDVSPSWWRDLPLGPAPHLPAAGERAAIDRLTQFCESALPQYDRH 268

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD P + GTS+LS  L  G L PR   +  ++               +L EL WREF+  
Sbjct: 269 RDRPDMAGTSRLSADLHFGTLHPRTVRDAARKTVEG------PALDRFLAELAWREFFAD 322

Query: 294 LMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           ++   P        P        +  +      AW +G TG+ ++DA MRQL + GWMHN
Sbjct: 323 VLWHRPDAAWHSWDPIGRHLAVDDGPQARERFTAWARGETGYGLVDAGMRQLLSEGWMHN 382

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+RM++ASFLVKDL +DWR G  +F+  L+DGD+ASNN  WQW A  G D+ PY RIFNP
Sbjct: 383 RVRMVSASFLVKDLHLDWRWGARWFLWHLVDGDIASNNLNWQWVAGIGTDAAPYHRIFNP 442

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTL 471
             Q +RFDP G + R +     ++P +                   L IV+HK      L
Sbjct: 443 DRQAERFDPDGAYRRRYC---ADLPAR-------------------LSIVNHKAERAEAL 480

Query: 472 NQYYAAK 478
            ++ AAK
Sbjct: 481 TRWAAAK 487


>gi|323454932|gb|EGB10801.1| hypothetical protein AURANDRAFT_77923 [Aureococcus anophagefferens]
          Length = 526

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 120/488 (24%), Positives = 197/488 (40%), Gaps = 45/488 (9%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ---------HGI 53
           A TA    +VWLR++LR+ DN  L  A       V+ V++     +              
Sbjct: 5   AATAKPTTIVWLRDELRVHDNALLAEAAARG-GPVLPVYVLDDRVFDAAATSESGGSRKC 63

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK-LFYNRQY 112
            A+++ F   +L  ++ +L  +G      +        + L   C        +  +   
Sbjct: 64  GAKRARFTLEALDDLRATLGARGSGLVVERG----RPADVLAGLCAAVGGDATVLCSDAA 119

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
              E + +  + K      + +      L  P  +    +  + ++T +R  + +   + 
Sbjct: 120 CSEERKDEAAVAKVAPLAKVWE----GTLYHPEDL--RGVAFHDLFTAWRTKVEKAGTRV 173

Query: 173 DLRSLPVPAIRLTGPV-----TPSNIPRFFDYPFQAIDPM---------FPIGEQNALHI 218
                P  A     P        + +P      + A D              GE  AL  
Sbjct: 174 RGDVFPKAATLPAPPAGVDAKLAAPLPTLDALGYDAADAACDGRGDFFAPAGGETAALAR 233

Query: 219 LRK--FCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           LRK  F ++++  Y   RD +     +++L+P+LS G +SPR       +      IK K
Sbjct: 234 LRKYVFEEDRLKDYFNTRDGMIGQGYSTKLAPWLSRGCVSPRAVARACADYERTRGIKNK 293

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
           S  +  + EL WR+++      Y S       +    +  W  D   L+ WK G TG P+
Sbjct: 294 S-TYWVVFELTWRDYFVFYAQKYGSKLFRPYGVKDIRERTWRADPEALRRWKAGETGAPL 352

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DA MR+L   G+M NR R   AS+LV DL +DWR+G E+F   L+D    +N G W  A
Sbjct: 353 VDANMRELAATGFMSNRGRQNVASYLVLDLGLDWRLGAEHFEEHLVDYTPEANWGNWHAA 412

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL- 454
           A      V     FN   Q K +DP+G +++ W+PEL  VP      P S    +  +  
Sbjct: 413 AGLSGGRVNR---FNILKQSKDYDPKGDYVKLWIPELAKVPAPQCFTPSSLSKADREAAG 469

Query: 455 --NYPLPI 460
             +YP P+
Sbjct: 470 AGDYPAPL 477


>gi|219119456|ref|XP_002180488.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP
           1055/1]
 gi|217407961|gb|EEC47896.1| cyclobutane pyrimidine dimer 1 [Phaeodactylum tricornutum CCAP
           1055/1]
          Length = 515

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 114/508 (22%), Positives = 199/508 (39%), Gaps = 44/508 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + ++WL+ DLR+TD+  L A     D  V  +++  P+Q  +  +      F    L+ +
Sbjct: 1   MDVIWLKRDLRLTDHGPLAAVAQRKDRDVCILYLYEPDQLAEPSVHGSHVLFANEGLVDL 60

Query: 69  QKSLSQKGIVFQYHQCSNFD----------DSIEWLDSYCLQQRVTKLFYNRQYEI-NEV 117
              LS    +      +             + I+ L +   Q+++ +L  + +       
Sbjct: 61  DTKLSNLRRLSSGQNAAASKSFGSLTVCHCEVIQALQAIHAQKKIARLLAHMETGHMRSY 120

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI---QNLVQADL 174
            RDK + K  + R I        +  P + ++  L     +    +  +   Q      L
Sbjct: 121 ARDKRVRKWCRDRKI------PFVELPQTGVSRCLTNRDDFHRNLQMFLKKKQYRTPTAL 174

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYV 231
               V  + L G           + P +           GE  AL ILR F   +   + 
Sbjct: 175 ECNIVIDLELPGRSMEPLFAELIEIPLEQRVDRTERQQGGETTALEILRSFLYHRGVGFS 234

Query: 232 EQRDIPAIQGTS--QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL------- 282
           +    P    TS  +LSPYL+ G +S R     L+E    L  +       WL       
Sbjct: 235 KGISSPNSSWTSCSRLSPYLTWGQISLRHVVQALQERQAQLKTQKCRSDDRWLRSFTAFS 294

Query: 283 NELIWREFYRHLMAFYPSVCM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           + + WR  +   +   P +        F P   +   + +    QAW  G TG+P++DA 
Sbjct: 295 SRVHWRSHFIQKLESEPEMEQRDVNAAFQPLRRQ-PGDWNECYYQAWSTGNTGYPMMDAC 353

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR L+  GW++ R+R +  SF   +L +DW     +     LD +   +    Q    +G
Sbjct: 354 MRCLHRHGWVNFRMRAMLVSFASYNLWLDWHRFAPHLARVFLDYEPGIHYPQIQMQ--SG 411

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LS 453
              +   R ++ T QGK  DP+G F+R ++PEL +VP  YIH P              + 
Sbjct: 412 TTGINALRCYSVTKQGKEHDPRGIFVRKYIPELQSVPNDYIHEPWKMSKSMQAKCGVHIG 471

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            +YP PIV+ ++       +  A ++++
Sbjct: 472 EHYPAPIVNEQETAKSAKERIAAVRRRN 499


>gi|37725009|gb|AAO23971.1| cryptochrome 2A [Pisum sativum]
          Length = 375

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/379 (26%), Positives = 164/379 (43%), Gaps = 23/379 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL  + 
Sbjct: 6   TIVWFRRDLRIEDNPALAAAAR--DGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +    D ++  L       + TK+ +N  Y+   + RD  ++++L  
Sbjct: 64  QSLKSLGAKLVLIKT---DSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVE 120

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  KS++  +L  P  + +     +  + PF +  +   ++      P   I   G V
Sbjct: 121 LGISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEPVSLIPPWQLIPAKGKV 180

Query: 189 TPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                    D   +          +   +  G  NA   L +F  +++  Y + R     
Sbjct: 181 ---ERCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGG 237

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP----KSGAFSWLNELIWREFYRHLM 295
             TS LSPYL  G LS R+ +   + + +    +     K     +L  +  RE+ R+L 
Sbjct: 238 DSTSLLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLC 297

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             +P     +  +       WN D    + W+QG TG+P++DA MR+L   GWMHNR+R+
Sbjct: 298 FNFP-FTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRV 356

Query: 356 ITASFLVKDLLVDWRIGEE 374
           I +SF VK LL+ W+ G +
Sbjct: 357 IVSSFAVKMLLLPWKWGMK 375


>gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
 gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
          Length = 522

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 121/501 (24%), Positives = 194/501 (38%), Gaps = 37/501 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI--SARQSHFIYASLLQ 67
            + W R  LR  DN +L  A   S   V  VF+   +  +   I   A Q  F+   L  
Sbjct: 9   TIHWFRKGLRFHDNPSLLHALRTSH-HVYPVFVMDLDFMKDFKIRSGANQWRFVIECLQD 67

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK-R 126
           +   L   G+     +     ++  +   +  +  +T+L ++ + E     RD  + K  
Sbjct: 68  LDTRLRAYGLRLFVARG----NAEAFFAEHFRKWNITQLTHDVETEHYHRFRDAAVRKIA 123

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   V   ++    L     I+ +      +     + ++++       S    A     
Sbjct: 124 VDEGVEVVNYVAHTLYNIDKIIEYNGGSAPLTYRQFQKVLKDFGAPPQASETATAEHFAS 183

Query: 187 PVTPS--------NIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVY--YYVEQRD 235
              P         N+    +   +   P  F  GE   L  + K  + + +   + + + 
Sbjct: 184 CSVPLEALRDERYNMVTLEELGMRCEHPSKFVGGETEGLRRVEKHLQNQGWVTQFEKPKT 243

Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P   +  T+ LSPY S G LS R  ++RL + +  L    ++ A S    +I R     
Sbjct: 244 APTSLLPSTTGLSPYFSFGCLSVRHFYHRLDKIYAKLR-SHQTSASSKSRVMIERTRCVL 302

Query: 294 LMAFYPSVCMGKP-----FIPWTEKIEWNKDSHLLQAWKQ--GYTGFPIIDAAMRQLNTI 346
           L+      C            W  +      S  +  +      TGFP IDA M QL   
Sbjct: 303 LLEMLSRTCRLIARLIFLLCNWHNRFLQLTISDFVACFLSSVAETGFPWIDAIMSQLQKE 362

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H+  R   A FL + DL + W  G++ F   LLD D + N G W W + +      Y
Sbjct: 363 GWVHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADYSVNAGNWMWLSGSAFYHQ-Y 421

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLP 459
            RIF P   GKR DP GTFIR +LP L + P QYI+ P              + ++YP P
Sbjct: 422 TRIFCPVRFGKRTDPDGTFIRAYLPVLKDFPAQYIYEPWKAPLNVQEAAGCIVGMDYPFP 481

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +VDH+      L      ++Q
Sbjct: 482 MVDHEIVSQQNLELMREIREQ 502


>gi|195995819|ref|XP_002107778.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens]
 gi|190588554|gb|EDV28576.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens]
          Length = 384

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 115/389 (29%), Positives = 176/389 (45%), Gaps = 15/389 (3%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           ++ +   LVWLR DLR+ DN AL+ A       +I V+I   +   +         ++Y 
Sbjct: 2   SSKIPCTLVWLRRDLRLIDNPALFHAAKRGQ--LITVYIFDEDCSGRRKTGQACLWWLYH 59

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +   LSQ  I       +   D+   L           +++NR YE  E  RD  +
Sbjct: 60  SLKSLHNQLSQWNIPLIMKSGN---DAFTILKELLDSYNADTIYWNRCYEPFEYNRDCSI 116

Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           E++L+   V  +++ D VL  P +I        ++Y  F    +           P    
Sbjct: 117 EEKLKMENVTVETYQDRVLFEPWTIKTAKGGPVQIYIHFWNQCLSLPQPRKPYDKPKFKN 176

Query: 183 R---LTGPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           +    +    P+   R           +   +  GE+ A+  L+ F K  +  Y E+   
Sbjct: 177 QTGCQSKCDEPAVWQRLAKLSQDMPMKLQDFWHPGEEQAISKLKSFIKNSLNAYAEKSQC 236

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHL 294
             +  TS LSPYL  G +SP   W+ ++                  +L  L WRE+  HL
Sbjct: 237 LRLNTTSNLSPYLHFGEISPFTVWHSVRHASSSAEPPAVKSESLKQYLRSLGWREYTCHL 296

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  YP +   K F    E+++   D   LQ+W+QG TG+P++DA MRQL+  G M NRLR
Sbjct: 297 LFHYPDLP-QKCFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNRLR 355

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           MI ASFL+K LLV W+ GEE+F S+L+D 
Sbjct: 356 MIVASFLIKHLLVPWQKGEEWFWSKLIDA 384


>gi|254506555|ref|ZP_05118696.1| FAD binding domain of DNA photolyase protein [Vibrio
           parahaemolyticus 16]
 gi|219550428|gb|EED27412.1| FAD binding domain of DNA photolyase protein [Vibrio
           parahaemolyticus 16]
          Length = 492

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 113/488 (23%), Positives = 198/488 (40%), Gaps = 30/488 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S++LVWL+ DLR+TD++ L+ A  +       ++I  P        S R   F+  SL  
Sbjct: 3   SINLVWLKRDLRLTDHQPLHDAIQDG-TPFALIYIFEPLLLNDPHFSDRHWRFVLQSLDD 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126
           + ++L+  G          F D+ +  +S      + K+F +++  +N    RDK L   
Sbjct: 62  INETLTPFGTSVHIL----FGDATQCFESLAHHYSIGKVFSHQEIGLNNTFERDKRLAAW 117

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                I            G++L  A    +    +   +   L    L       + L G
Sbjct: 118 FTSNGIQWHESQH-----GAVLRGAKTRQQWDERWHTFMRAPLADPQLDHARW--VNLEG 170

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQ 244
                      ++  +A + M   G Q A   L  F + +   Y  +   P++     ++
Sbjct: 171 IEPHMRFSPPLEWQGKA-NGMQTGGSQLAWKTLDDFFRRRGKDYYRRISSPSLSRSACTR 229

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--- 301
           +SPYL+ G +S R+ +  L + +     K    A +  + L W   +         +   
Sbjct: 230 ISPYLAWGNVSLREVYQYLLQHWQLKGFK--RSAIALSSRLHWHCHFMQKFESEVEMEFR 287

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           C+ + + P   +    KD  +L+AWK G TG P++DA MR L+  G+++ R+R +  S L
Sbjct: 288 CLNRGYEPLIVQ-STRKDEMMLKAWKTGTTGLPLVDACMRCLHHTGYLNFRMRAMLVSVL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              +  DWR G  +     LD +   +   +Q     G   +   RI+NPT Q +  DP 
Sbjct: 347 CHHMNQDWRDGVTHLAQLFLDFEPGIHYPQFQMQ--AGVTGINTVRIYNPTKQAQEHDPD 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQYY 475
           G FI+ WLPEL  +P   +  P        +         Y  PI+D          + +
Sbjct: 405 GHFIKKWLPELAALPAPLLFEPWKMTPMEIMMYEIPKQSLYLNPIIDVDNCAREARERLW 464

Query: 476 AAKKQSLL 483
           + +K+  +
Sbjct: 465 SWQKEPAV 472


>gi|148976255|ref|ZP_01812979.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium
           SWAT-3]
 gi|145964349|gb|EDK29604.1| deoxyribodipyrimidine photolyase, putative [Vibrionales bacterium
           SWAT-3]
          Length = 497

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 108/485 (22%), Positives = 200/485 (41%), Gaps = 32/485 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++++VWL+ DLR+TD+  L  A  +     I ++I  P        S R   F++ SL  
Sbjct: 3   TINVVWLKRDLRLTDHAPLQHALSD-QYPTILLYIFEPMLLNNAHYSERHWRFVWQSLQC 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKR 126
           + +SL   G        S    +++  ++   +  +  LF +++  +N    RD+ L   
Sbjct: 62  MNQSLKAYGHQVSILHGS----AVDCFEAIQSRYHIKNLFSHQEIGLNCTFERDRELSTW 117

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +H +  + F        G+++  +         +   +   + +         ++   
Sbjct: 118 FTEHNIPWQEF------AQGAVVRGSKDRVGWDKHWNSVMRAPIEE---SLFTAESLHTL 168

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
            P                ++ +   G   A   L  F   +   Y      P  +    +
Sbjct: 169 DPEELELAMEPPQAWLTKVNGIQTGGSALAWATLHDFFDRRGRDYYRSISSPEASRHACT 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-- 301
           +LSPYL+ G +S R+ +  L   +     +    A S  + L W   +        ++  
Sbjct: 229 RLSPYLAWGNISLREVYQHLLGHWQVAGFRRSLIALS--SRLHWHCHFMQKFESECAMEY 286

Query: 302 -CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
            C+   +    +K E  KD   LQAWK G TG P++DA MR L+  G+++ R+R +  SF
Sbjct: 287 RCINHAYEALLQK-ETVKDPTHLQAWKIGMTGVPLVDACMRCLHHTGYINFRMRSMLVSF 345

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L   + +DWR G  +     LD +   +   +Q     G   +   RI+NPT Q +  D 
Sbjct: 346 LTHHMNMDWRDGVTHLAQMFLDFEPGIHYPQFQMQ--AGVTGINTIRIYNPTKQAQEHDS 403

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWL----DKNDLSLNYPL--PIVDHKKACHHTLNQY 474
            G FIR W+PEL+++PT  +  P          ++L  ++P   P+VD + +      + 
Sbjct: 404 DGDFIRKWVPELSDIPTPLLFEPWKMTPMEVMMHELEPDFPYLNPVVDLEVSAKEARVRL 463

Query: 475 YAAKK 479
           ++ +K
Sbjct: 464 WSWRK 468


>gi|218516572|ref|ZP_03513412.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3]
          Length = 277

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 118/281 (41%), Positives = 165/281 (58%), Gaps = 10/281 (3%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           ++  GE+ A   LR F ++++  Y E RD PA   TS LSP+L++G +SP + W+  +  
Sbjct: 1   LWTPGEEGAQEKLRTFIEDRLDGYKENRDYPAKPATSMLSPHLALGEISPARIWDATRGL 60

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
              L   P +    +  E+ WR+F  HL+A +P +     +    ++ EW        AW
Sbjct: 61  SKHL---PAADIVHFRKEIAWRDFSYHLLAHFPRLATAN-WEDRFDRFEWGSAEEDFNAW 116

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
            +G TG+PI+DA MRQL   GWMHNR+RMI ASFL+KDL+VDWR GE +F   L+D D A
Sbjct: 117 SRGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFLIKDLMVDWRHGEAWFRDTLVDADPA 176

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----A 442
           +N   WQW A +G D+ P+FR+FNP +QG++FDP G F+R  +PEL  +  +YIH    A
Sbjct: 177 NNAASWQWVAGSGADASPFFRVFNPVLQGEKFDPDGDFVRSHVPELRKLDAKYIHRPFEA 236

Query: 443 PHSWLDKND--LSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           P S LD  D  L   YP P+VDH  A    L  Y A +  +
Sbjct: 237 PKSVLDAADVILGETYPEPVVDHAGARKRALAAYNAIRGAA 277


>gi|297582918|ref|YP_003698698.1| DASH family cryptochrome [Bacillus selenitireducens MLS10]
 gi|297141375|gb|ADH98132.1| cryptochrome, DASH family [Bacillus selenitireducens MLS10]
          Length = 478

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 133/482 (27%), Positives = 220/482 (45%), Gaps = 35/482 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYA 63
           V+++W R+DLRI D++ L  A H +  +  AVF+       +           +  F+  
Sbjct: 4   VNVIWFRHDLRIHDHEPLRLA-HWAKEETEAVFVRDARMDEKVTPGLKRAGEHRERFLME 62

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL+ +  SL  +G+ F   +       I+WL     ++  T +F +      E R  + +
Sbjct: 63  SLVVLAGSLEAEGMPFTVLKGPVVKTMIDWLT----ERGATDVFLHEHPGFEERRDLEEV 118

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182
           ++ L H +     +   +     +     +    +T FRK L  +L      RS    + 
Sbjct: 119 QRALPH-IHWHVSEGHTMFRRDQLPFSFSEFPMSFTMFRKRLEAHLRLPEKKRSFSYDSY 177

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP------------MFPIGEQNALHILRKFC--KEKVY 228
                  P  +       F A+              +   GEQ AL  LR +     +++
Sbjct: 178 DTVTEAEPVFLSGKESGSFGAVRGSGDHIPHAGGQGIVRGGEQEALARLRSYVGNASRLF 237

Query: 229 YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y E RD + A   +S+LS +L+ G LSP++ +  + +  ++        ++    EL+W
Sbjct: 238 TYKETRDGMFAFDDSSKLSFWLANGSLSPKRVYRAILD--MEAANGRNESSYWLFFELLW 295

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE+++ LM    +    K  +     I W++D  L QAWK G TGFP++DAAMR+L   G
Sbjct: 296 REYFQWLMLATDARLFTKQGLLDV-AIVWHEDKALFQAWKDGETGFPLVDAAMRELKATG 354

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +M NR R   ASFL K+L ++W  G  YF  QL+D D ASN G W + A  G D     R
Sbjct: 355 YMSNRARQNAASFLTKNLGINWLWGARYFEEQLIDYDPASNYGNWAYQAGVGTDLRE-LR 413

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467
            FN   QG R+DP+G++ ++WL   + +P   ++ P           ++P PIVD +++ 
Sbjct: 414 AFNVIGQGIRYDPKGSYAKNWLHLPDTLPGHTVYDPVKLSA----HTDWPQPIVDLEESL 469

Query: 468 HH 469
             
Sbjct: 470 ER 471


>gi|325105098|ref|YP_004274752.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
 gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
          Length = 433

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 186/442 (42%), Gaps = 23/442 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHF 60
           A    LVW RNDLRI DN+ L  A   S  +++ V+I  P  +       +     ++ F
Sbjct: 2   ASRTILVWFRNDLRIHDNEILIEATLKS-TEIVPVYIFDPRYYTDTSYGTKKTGKLRAQF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           I  S+  ++KSL   G      +        E L     +  V +++++R+    E    
Sbjct: 61  IIDSVTDLKKSLKALGGDLLVVKGKPE----EVLPQLIKEYHVDEVYHHREVASEETDIS 116

Query: 121 KLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             +E  L + +V  K F    L     +      +  ++  FRK + +     D    P 
Sbjct: 117 SAVEDALWKSQVNLKHFIGHTLYHKEDLPFPIKDIPDLFAKFRKKVEREGEIRDPFETPG 176

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKV--YYYVEQR 234
             I +   +  S +P   D  F+  + +      GE + L+ L ++  EK     Y  +R
Sbjct: 177 Q-ISVPDSLASSEVPALEDLGFERSEQLDASIKGGESSGLNRLNEYLWEKDLLKEYKAKR 235

Query: 235 DIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           ++       SQLSP+LS+G +SPR+ +  LK    +             NEL++R+F+R 
Sbjct: 236 NLLTGFNNNSQLSPWLSLGCISPRKVYWELKRYEHEKG--GTDNINLLFNELLFRDFFRF 293

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   + +        P +   E      L + WK G TG  ++DA M +L   G M  + 
Sbjct: 294 MFKKHSTAYFVDIAQPMSLNAE---QQVLFEKWKNGETGIDLVDANMLELKHRGTMAYKG 350

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R   A++L+ +L + W  G  YF   L+D   ASN G W   A  G         FN   
Sbjct: 351 RQTVAAYLISELELPWFYGAAYFEEMLIDYATASNWGNWALFAGIGTPQKEVNPAFNLDK 410

Query: 414 QGKRFDPQGTFIRHWLPELNNV 435
           Q K  DP+G +I+ WL EL   
Sbjct: 411 QIKDSDPKGDYIKVWLSELTEF 432


>gi|308049735|ref|YP_003913301.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Ferrimonas balearica DSM 9799]
 gi|307631925|gb|ADN76227.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Ferrimonas balearica DSM 9799]
          Length = 484

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 113/483 (23%), Positives = 196/483 (40%), Gaps = 36/483 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VWL+ DLR+ D+  L  AC  SDA ++ +++  P+       + R   F++ SL  + 
Sbjct: 7   QVVWLKRDLRLQDHAPLAFACR-SDAPLLLLYLFEPQLVNDPHYAPRHWRFVWQSLKDLN 65

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRLQ 128
             L+  G          F D I+ L+       + +L  + +  ++    RD+ + +   
Sbjct: 66  AGLAPHGGRVTC----WFCDPIDALNRLASDFTLVQLLSHEETGLSVTFERDQAVSRWCD 121

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
              +          P G++             +RK + Q   + D   +    +      
Sbjct: 122 DNGVPWHQW-----PNGAVQRGLNHRRGWDGHWRKTMAQPTAEPDWARVRWCHL---PDQ 173

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQLS 246
           T     R     FQ      P GE  A   L  F  ++   Y      P       S+LS
Sbjct: 174 TIPADWRSAAEGFQ------PGGESAARDCLDGFLAQRGRDYHRHISQPGNSRTSCSRLS 227

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL+ G LS RQ   RL+++      +P     +  + L WR+ +        +   G+P
Sbjct: 228 PYLAWGNLSVRQVIQRLRQDADTPDWRP--ARRALTSRLKWRDHFIQKFESECA-MEGRP 284

Query: 307 FIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                    +++D+     L AW+ G TG+P++DA+MR L+  G+++ R+R +  SFL  
Sbjct: 285 INQAYRHFPYHQDADSDARLLAWQNGQTGYPLVDASMRALHQTGYLNFRMRAMLVSFLCH 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L++DWR G  +     LD +   +   +Q  A+     +   RI+NP  Q    D  G 
Sbjct: 345 HLMIDWRRGVHHLARLFLDFEPGIHYPQFQMQAAVT--GIHTIRIYNPVKQSLEQDSDGQ 402

Query: 424 FIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           FI+ + PEL  +P    H P         L + +   +YP PI+D  +         +  
Sbjct: 403 FIQAFCPELARLPVPVRHTPWQLTPMEHLLYEFEPGRDYPSPIIDLSETGPRARQLLWQW 462

Query: 478 KKQ 480
           + +
Sbjct: 463 RAR 465


>gi|145341190|ref|XP_001415696.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575919|gb|ABO93988.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 551

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 120/503 (23%), Positives = 203/503 (40%), Gaps = 54/503 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHG---- 52
           M  ++  +  +VW RNDLR+ DN  +  A      +  A+V+ V++     ++       
Sbjct: 1   MATSSPRTRVIVWFRNDLRLLDNAVVARAAALRGQSDAAEVVPVYVFDETFFKTSKRGLA 60

Query: 53  -ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
              A +  F    +  ++++L   G           D   E   +       T +    +
Sbjct: 61  RFGAGRGKFTIECVDDLKRALRGVGSDLLVRCGKTEDVITEL--TLTGANDKTIVLTQTE 118

Query: 112 YEINEVRRDKLLEKRLQHRV-------ICKSFDDSVLLPPGSILN----HALQMYKVYTP 160
               E   D+ +E+  + R          +    S L     +          +  V+TP
Sbjct: 119 VTSEETDMDRAVERASKERARSGGASASMERLWGSTLYHADDLPYDFAGGLHDLPDVFTP 178

Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVT---PSNIPRFFDYPFQAIDPM---------- 207
           FR  +        +   P      + P +      +P   D PF + +            
Sbjct: 179 FRNKVESKCSVRAVVPAPTANALGSVPASVAGLDWMPEPKDLPFASAEIAPACEKWLKDG 238

Query: 208 --------FPIGEQNALHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSP 256
                   F  GE  AL  ++ +  +      Y E R+ +     +++L+P+L++G +SP
Sbjct: 239 ADERSVLEFKGGESQALARVKYYLWDSDLLATYFETRNGMLGGDYSTKLAPWLALGCVSP 298

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316
           R   + ++      +       +  + ELIWR+F++     + +               W
Sbjct: 299 RYVVSEIRRYESARV--ENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTANRTA-SW 355

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
             D  +L+AWK G TG+P+IDA MR+L   G+M NR R   AS+L  D  VDWR G ++F
Sbjct: 356 KSDEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGVDWRHGADWF 415

Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436
              LLD D ASN G W  AA      +     FN   Q K +DP G +++ W+PEL  +P
Sbjct: 416 EHHLLDYDTASNWGNWCAAAGMTGGRINR---FNIAKQTKDYDPSGDYVKRWIPELREIP 472

Query: 437 TQYIHAPHSWLD--KNDLSLNYP 457
             YI  P+      ++ +SL+YP
Sbjct: 473 AAYITEPNQAPRELRDRISLDYP 495


>gi|2564038|dbj|BAA22943.1| photolyase [Thermus thermophilus]
          Length = 420

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 132/425 (31%), Positives = 200/425 (47%), Gaps = 35/425 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R DLR+ D+ AL  A       V+ + +  P   +      R+  +   ++ 
Sbjct: 1   MGPLLVWHRGDLRLHDHPALLEALARG--PVVGLVVLDPNNLKTT---PRRRAWFLENVR 55

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++++   +G      +   ++   E         +   ++    Y      RD  +++ 
Sbjct: 56  ALREAYRARGGALWVLEGLPWEKVPEAARRL----KAKAVYALTSYTPYGRYRDAKVQEA 111

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L            +L  P  +     + Y+VYTPF +  +          LP P     G
Sbjct: 112 LP-------VPLHLLPAPHLLPPDLPRAYRVYTPFARRFLGVEA-----PLPAPEALPKG 159

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P            P          GE+ AL  LR F + K+  Y E+RD    +G S+LS
Sbjct: 160 PEEGEIPREDPGLPLPE------PGEEAALAGLRAFLEAKLPAYAEERDRLDGEGGSRLS 213

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY ++GVLSPR      +        +   GA  W+ EL+WR+F  HL+  +P +   +P
Sbjct: 214 PYFALGVLSPRLAAWEAER-------RGGEGARKWVAELLWRDFSYHLLYHFPWMAE-RP 265

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P  + + W +D  L +AW +G TG P++DAAMR+L+  G++ NR RM  A F VK LL
Sbjct: 266 LDPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLL 325

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + W+  EE F   LLDGD A N  GWQWA   G D+ PYFR+FNP +QG+R DP+G +++
Sbjct: 326 LPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLK 385

Query: 427 HWLPE 431
            W PE
Sbjct: 386 RWAPE 390


>gi|46255129|ref|YP_006041.1| deoxyribodipyrimidine photolyase [Thermus thermophilus HB27]
 gi|47606703|sp|P61496|PHR_THET2 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|46197978|gb|AAS82388.1| deoxyribodipyrimidine photolyase [Thermus thermophilus HB27]
          Length = 420

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 132/425 (31%), Positives = 200/425 (47%), Gaps = 35/425 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R DLR+ D+ AL  A       V+ + +  P   +      R+  +   ++ 
Sbjct: 1   MGPLLVWHRGDLRLHDHPALLEALARG--PVVGLVVLDPNNLKTT---PRRRAWFLENVR 55

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++++   +G      +   ++   E         +   ++    Y      RD  +++ 
Sbjct: 56  ALREAYRARGGALWVLEGLPWEKVPEAARRL----KAKAVYALTSYTPYGRYRDAKVQEA 111

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L            +L  P  +     + Y+VYTPF +  +          LP P     G
Sbjct: 112 LP-------VPLHLLPAPHLLPPDLPRAYRVYTPFARRFLGVEA-----PLPAPEALPKG 159

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P            P          GE+ AL  LR F + K+  Y E+RD    +G S+LS
Sbjct: 160 PEEGEIPREDPGLPLPE------PGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLS 213

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY ++GVLSPR      +        +   GA  W+ EL+WR+F  HL+  +P +   +P
Sbjct: 214 PYFALGVLSPRLAAWEAER-------RGGEGARKWVAELLWRDFSYHLLYHFPWMAE-RP 265

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P  + + W +D  L +AW +G TG P++DAAMR+L+  G++ NR RM  A F VK LL
Sbjct: 266 LDPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLL 325

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + W+  EE F   LLDGD A N  GWQWA   G D+ PYFR+FNP +QG+R DP+G +++
Sbjct: 326 LPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLK 385

Query: 427 HWLPE 431
            W PE
Sbjct: 386 RWAPE 390


>gi|260063633|ref|YP_003196713.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
 gi|88783078|gb|EAR14251.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
          Length = 515

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 121/439 (27%), Positives = 191/439 (43%), Gaps = 26/439 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ-----SHF 60
            M+  L W RNDLR+TDN  L AAC  S  +V+ VF   P  +R+     R+     + F
Sbjct: 43  TMTTALYWFRNDLRVTDNPGLLAAC--SSQRVLTVFCFDPADFREGDYGIRRMGPYRAGF 100

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  S+L +++ L    I    H    F    + L     +  VT L   R++  +E    
Sbjct: 101 LRESVLALREQLQGLNISLHIH----FGPPGDILPGMIKKYGVTDLHLQREWTRDECLAL 156

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPV 179
             + + L   V         L  P  +   +   +  V+T FRK   +++        P 
Sbjct: 157 DAVREGLPPGVTVHEHYQQFLFHPEDLPYDSFDDIPDVFTGFRKKCEKHVSVRSPEDTPA 216

Query: 180 PAIRLTGPVTPSNIPRFFDY----PFQAIDPMFP--IGEQNALHILRKFCKEKV--YYYV 231
               +  P     +P +       P       FP   GE  A   L+++  E      Y 
Sbjct: 217 RREAVFAPAGDGGLPGWEALGMAPPRADSRSAFPFRGGEPAAWDRLQEYFWESRFLSTYK 276

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             R+ +   + +++ SP+L+ G LS RQ +  +K    ++  +     +  + ELIWR++
Sbjct: 277 RTRNGLVGTRYSTKFSPWLANGSLSARQIYREVKRYEQEV--EKNRDTYWLVFELIWRDY 334

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           ++++   +         I   E+ +W         W QG T    I+A M++L   GWM 
Sbjct: 335 FKYVSLKHGPKIFAPGGIREVER-DWGASREAFARWTQGETDSDFINANMQELRLTGWMS 393

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R  TAS+  +D+  DWR+G  +F   LLD D+ SN G W + ++ GND  P  R FN
Sbjct: 394 NRGRQNTASYWSQDMGQDWRLGAAWFQYLLLDYDVHSNWGNWMYNSAVGND--PRNRKFN 451

Query: 411 PTIQGKRFDPQGTFIRHWL 429
           P  Q  R+D  G F R WL
Sbjct: 452 PEHQASRYDASGKFRRLWL 470


>gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
 gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
          Length = 433

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 183/446 (41%), Gaps = 36/446 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA---------RQSH 59
           + L+W R  LR+ DN +L AACH S   V  VF+  P        +           +  
Sbjct: 1   MALLWFRKGLRLHDNPSLEAACHGS-RNVYPVFVLDPWFLAPDPSAPSPGSARVGINRIQ 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  SL  + ++LS +G        +              Q R+ KL +    E   + R
Sbjct: 60  FLLESLQDLDRNLSSRGSKLLLVHGNPI------------QWRIRKLCFEFDTEPYALDR 107

Query: 120 DKLLEKRLQHRVICKSFD-DSVLLPPGS-ILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           D  +++  + + I         +  P   I  +  +    +  F K L+           
Sbjct: 108 DAKIKEHAKDKGIELHCSVSHTIFNPDLLIAKNGGKAPLTFQSFCKNLVPATKPIGNGPS 167

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVY--YYVE 232
            +P       +    +P   +  +         F  GE   L  L      + +   + +
Sbjct: 168 SIPPTGDLHGIKVVPVPTLEELGYTDFHEDFSPFRGGETVGLTRLEDSLANEKWVCEFEK 227

Query: 233 QRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            +  P       T+ LSPYL  G LS R  ++R+KE +        S   S   +L+WRE
Sbjct: 228 PKGDPTAFIKPATTVLSPYLKFGCLSSRLFYSRVKEVYSRAK-SFTSPPVSLEAQLLWRE 286

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+        +        P  ++I W  D  LL AW+ G TG+P IDAAM QL   GWM
Sbjct: 287 FFYTAAYATANFDKM-VGNPTCKQIPWKDDDELLSAWRDGRTGYPWIDAAMTQLRKWGWM 345

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL + D+ V W  G + F   L+D D + NNG W W +++   +  Y RI
Sbjct: 346 HHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDADWSINNGNWLWLSASAFFNQ-YHRI 404

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNN 434
           ++P    K++D QG +I+H+LP +  
Sbjct: 405 YSPITFAKKYDRQGNYIKHFLPVIKG 430


>gi|86134106|ref|ZP_01052688.1| cryptochrome, DASH family [Polaribacter sp. MED152]
 gi|85820969|gb|EAQ42116.1| cryptochrome, DASH family [Polaribacter sp. MED152]
          Length = 436

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 120/436 (27%), Positives = 199/436 (45%), Gaps = 25/436 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIY 62
           +  L+W RN+LR  DN ++  A  N D KVIA++   P+ +++           ++ F+ 
Sbjct: 7   TTGLIWFRNNLRTQDNTSIQKAIQNHD-KVIAIYFFDPKYFKEDEFGFQKTAKFRAQFLL 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            ++  +++ L    I       + FD     L +     +V  ++  +++   E+  +KL
Sbjct: 66  ETITDLKQQLKDLNITLL----TYFDAPENQLLNITETYKVDTIYTQKEWTKEELDTNKL 121

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           + K +   V      D  L  P ++ N+   +  V+T FRK L +  V+     L     
Sbjct: 122 VLKTMSDTVNFVEDYDQFLYHPETVSNNFSNIPNVFTQFRKKL-EKYVKIQEEILIDKHD 180

Query: 183 RLTGPVTPSNIPRFFDYPF------QAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQR 234
                  P+ IP   +  F      +     F  GE  AL  L  +    +KV +Y + R
Sbjct: 181 DSNLIHNPTEIPSLKELGFNDFVMPKKSAFPFKGGETAALERLNYYLFESKKVGFYKKTR 240

Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + +     +++ SP+L+ G LS R  + ++K+   +         +  + ELIWR+++++
Sbjct: 241 NGLVGTDYSTKFSPWLANGSLSARTIYYQIKKY--EAEFGSNQSTYWVIFELIWRDYFKY 298

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   Y         I      +WN D + +Q W  G T    ++A M +L   GWM NR 
Sbjct: 299 ISLKYGYEIFKIGGILE-RNYQWNVDKNCIQDWINGNTKDDFVNANMIELKETGWMSNRG 357

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R   AS+  K+LL DWRIG  YF S LLD D+ SN G W + A  GND  P  R FN  +
Sbjct: 358 RQNVASYFAKELLQDWRIGAAYFESLLLDYDVHSNYGNWMYVAGVGND--PRDRKFNTQL 415

Query: 414 QGKRFDPQGTFIRHWL 429
           Q +R+D    F + WL
Sbjct: 416 QAERYDANHKFRKLWL 431


>gi|330684348|gb|EGG96079.1| putative deoxyribodipyrimidine photo-lyase [Staphylococcus
           epidermidis VCU121]
          Length = 456

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 140/479 (29%), Positives = 219/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M V ++ L    RI  N  L   C+   +    V I   E++     +  ++ F + +L 
Sbjct: 1   MKVGVI-LNRVFRIHHNPLLAYICNQLGSTDTCVLIIPKEKFG--DEAQLKASFYHGTLN 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLL 123
               +L+       Y   +N  D    L ++C  Q++ K+        Y           
Sbjct: 58  AFINTLN------HYQIQTNVMDY-NHLIAFCKNQQLDKVVMASDIMSYHHESYDYPHQK 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++  +  +  ++        P    N+  + YKV+T F K     +++       +  I 
Sbjct: 111 QRFQEAGIKVEALRVQHYFSPRKTFNNQGEPYKVFTSFYKKWRPYVIERHRAHYELSDIS 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             G    +        P Q  D    + E+      + F    +  Y   R+      TS
Sbjct: 171 KIGEPAYA--------PTQINDSHSGLTEKEVQQQWQSFLNNDIQNYESNREYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G++   Q +N L   +       +S   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIALAYGLIDILQVFNDLLHGYE----SNESNYEAFIRELIFREFYYVLMTQYPETA- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F      IEW  D      WK G TG+PI+DAAM++LN  G+MHNR+RM+T+ FL K
Sbjct: 278 HQSFKEKYRNIEWVNDKQQFDQWKNGKTGYPIVDAAMQELNQTGYMHNRMRMVTSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DW  GE YF  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP   
Sbjct: 338 DLLIDWTWGETYFKDKLIDYDNASNVHGWQWSASTGTDAVPYFRMFNPIKQSERFDPNAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSW-----LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ WL  LN+V +  +H               L ++YP P+V+H+ +    ++ + + 
Sbjct: 398 YIKQWLSTLNHVDSHLLHDTQKHMQLLKQQGIQLGVDYPEPMVNHQYSRQRVMSLFKSL 456


>gi|319401235|gb|EFV89450.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           FRI909]
          Length = 457

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 138/484 (28%), Positives = 233/484 (48%), Gaps = 41/484 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    RI +N        N ++     FI   E++ +      Q  + Y S+ 
Sbjct: 1   MAIGVI-LNRVFRINNNPLFNYIYRNKESINQCYFIIPTEEFEEEAKKKAQ--YYYGSIQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVR 118
           +    L +  I         F    + L  +C +Q + K+        +++ +Y+I   R
Sbjct: 58  KFMHELQRYDI-------EPFLMPYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                ++  Q  +   S   +    P    N   + YKV+T F +     L+  D     
Sbjct: 111 -----KRFKQADIQVISLRANHYFNPCKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYH 165

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           +  I      +   I   +          + I E++  +   +F  + +  Y E R+   
Sbjct: 166 LEDITKVAVKSQHKIKEDYH--------SYGISERDVQNRWSEFLSQDIENYKENREYLP 217

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TSQLS YL+ G++   Q +N L + +     K +    +++ ELI+REFY  LM  Y
Sbjct: 218 EVLTSQLSIYLAYGMIDIIQVFNDLLQNY----DKNEQNYEAFIRELIFREFYYVLMTNY 273

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P       F    ++++W+ +    + WK G TGFPIIDAAM +L T G+MHNR+RM+ +
Sbjct: 274 PETA-HVAFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVS 332

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL KDL +DW  GE +F  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RF
Sbjct: 333 QFLTKDLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERF 392

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQ 473
           D    +I+ ++P+LN +  +Y+H  H +  +      ++  +YP  ++DHK++    +++
Sbjct: 393 DNNARYIKTYIPKLNQIDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSE 452

Query: 474 YYAA 477
           + A 
Sbjct: 453 FKAL 456


>gi|239636691|ref|ZP_04677693.1| deoxyribodipyrimidine photo-lyase [Staphylococcus warneri L37603]
 gi|239598046|gb|EEQ80541.1| deoxyribodipyrimidine photo-lyase [Staphylococcus warneri L37603]
          Length = 456

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 143/479 (29%), Positives = 219/479 (45%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M V ++ L    RI  N  L   C+  D     V I   E++     +  ++ F + +L 
Sbjct: 1   MKVGVI-LNRVFRIHHNPLLAYICNQLDTTDTCVLIIPKEKFG--DEAQLKASFYHGTLN 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLL 123
               +L+       Y   +N  D  ++L  +C+ Q++ K+        Y           
Sbjct: 58  AFINTLN------HYQIQTNVIDY-DYLIEFCINQQLDKVVMASDIMSYHHESYDYPHQK 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           ++     +   +        P    N+  + YKV+T F K     ++Q       +  I 
Sbjct: 111 QRFHDAGIHVDALRVQHYFSPRKTFNNQGEPYKVFTSFYKKWRPYVMQRHRAHYELSDI- 169

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                  S I      P Q  D    + E+      + F    +  Y   R       TS
Sbjct: 170 -------SKIVEPAYAPTQINDSHSGLTEKEVQQQWQSFLNNDIQNYESNRAYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G++   Q +N L + +       +S   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIALAYGLIDILQVFNDLLQGYE----SDESNYEAFIRELIFREFYYVLMTQYPETA- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F      I+W  D      WK G TG+PI+DAAM++LN  G+MHNR+RM+T+ FL K
Sbjct: 278 HQSFKEKYRNIDWVNDKQQFNKWKNGETGYPIVDAAMQELNQTGYMHNRMRMVTSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DLL+DWR GE YF  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD    
Sbjct: 338 DLLIDWRWGETYFKDKLIDYDNASNVHGWQWSASTGTDAVPYFRMFNPIKQSERFDQNAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSW-----LDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ WLP  NNV +  +H              +L ++YP P+V+H  +    ++ + + 
Sbjct: 398 YIKQWLPTFNNVDSHLLHDTKKHMQLLKQQGIELGIDYPEPMVNHSDSRQRVMSLFKSL 456


>gi|149198712|ref|ZP_01875755.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155]
 gi|149138148|gb|EDM26558.1| Deoxyribodipyrimidine photolyase [Lentisphaera araneosa HTCC2155]
          Length = 481

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 110/484 (22%), Positives = 185/484 (38%), Gaps = 28/484 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VWL+ DLR+ D+  L AA   S    + ++   P       +S    +FIY SLL++
Sbjct: 4   INVVWLKRDLRLNDHACL-AAAEASKLPYLIIYCFEPRLINAPDVSENHLNFIYLSLLEM 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-VRRDKLLEKRL 127
           QK L            S    S+E         ++  +F ++++      +RD+ +    
Sbjct: 63  QKKLEPFNRPLYILHAS----SVEAFAYIQKNYQIKNIFAHQEHGTTRTWKRDRQIIDFC 118

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               I       +      I        K    +      N+++           +   P
Sbjct: 119 WQEKIEL-----LEAEHSGIKRGIQNRDKWDKAWFSWHSANIIRNSYSKGHFTFDQDLFP 173

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA--IQGTSQL 245
                  ++   P+     +   GE  A   L  F  ++   Y      P+   +   +L
Sbjct: 174 A--VFYFKYHSKPY--SKNLQNPGEDTAHRYLTSFLADRGKDYHRFISKPSKSRKSCGRL 229

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G +S RQ +  +KE         K      L  + WR  +        S     
Sbjct: 230 SPYLAWGNISSRQVYQFIKE--SPKYKDNKRAYSGLLTRIKWRSHFIQKFEVECSY-EYL 286

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 E +  N ++  ++AW++G TG+P++DA MR L+  GW++ R+R +  SF    L
Sbjct: 287 YLNKGYELLSLNFNAEHIRAWEKGKTGYPLVDACMRCLHATGWINFRMRAMLTSFFCHHL 346

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
             DWR G  +     LD +   +   +Q     G   +   RI+NP  Q    DP G FI
Sbjct: 347 AQDWRDGVYHLAKLFLDYEPGIHFPQFQMQ--AGTTGINTVRIYNPIKQSMDNDPHGEFI 404

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLN------YPLPIVDHKKACHHTLNQYYAAKK 479
           R W+PEL  +    IH P                  YP PI+D K+      ++ +  + 
Sbjct: 405 RQWVPELKELNNNEIHEPWKIELMEAKMKGYANLHLYPDPIIDIKETYRLARDRIWGLRT 464

Query: 480 QSLL 483
             L+
Sbjct: 465 NPLV 468


>gi|27467381|ref|NP_764018.1| putative deoxyribodipyrimidine photolyase [Staphylococcus
           epidermidis ATCC 12228]
 gi|27314924|gb|AAO04060.1|AE016745_159 putative deoxyribodipyrimidine photolyase [Staphylococcus
           epidermidis ATCC 12228]
          Length = 457

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 141/484 (29%), Positives = 233/484 (48%), Gaps = 41/484 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+ +N        N ++     FI   E++ +      Q  + Y S+ 
Sbjct: 1   MAIGVI-LNRVFRLNNNPLFDYIYSNKESINHCYFIIPTEEFEEEAKKKAQ--YYYGSIQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVR 118
           +    L +  I         F  S + L  +C +Q + K+        +++ +Y+I   R
Sbjct: 58  KFMYELQRYDI-------EPFLMSYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                ++  Q  +   S   +    P    N   + YKV+T F +     L+  D     
Sbjct: 111 -----KRFKQANIQVISLRANHYFNPRKTYNKQGEPYKVFTSFYRKWRPYLMIRDEYDYH 165

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           +  I  +  V  S      DY    I       E++  +   +F  + +  Y E R+   
Sbjct: 166 LEDI--SKVVVKSQHKIKEDYHSYGIS------ERDVQNRWSEFLSQDIENYKENREYLP 217

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TSQLS YL+ G++   Q +N L + +     K +    +++ ELI+REFY  LM  Y
Sbjct: 218 EVLTSQLSIYLAYGMIDIIQVFNDLLQNY----DKNEQNYETFIRELIFREFYYVLMTNY 273

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P       F    ++++W+ +    + WK G TGFPIIDAAM +L T G+MHNR+RM+ +
Sbjct: 274 PETA-HVAFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVS 332

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL KDL +DW  GE +F  +L+D   ASN  GWQW+ASTG D+VPYFR+FNP  Q +RF
Sbjct: 333 QFLTKDLFIDWIWGESFFKQKLIDYYAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERF 392

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQ 473
           D    +I+ ++P LN V  +Y+H  H +  +      ++  +YP  ++DHK++    +++
Sbjct: 393 DNNARYIKTYIPRLNQVDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSE 452

Query: 474 YYAA 477
           + A 
Sbjct: 453 FKAL 456


>gi|219116188|ref|XP_002178889.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
           tricornutum CCAP 1055/1]
 gi|217409656|gb|EEC49587.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
           tricornutum CCAP 1055/1]
          Length = 610

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 118/519 (22%), Positives = 201/519 (38%), Gaps = 71/519 (13%)

Query: 2   KATTAMSVHLV--WLRN-DLRITDNKALYAACHNSDAKVIAVFIATP------------- 45
           KAT+  S  +V  W R+ DLR+ DN AL  +   +++  + VF                 
Sbjct: 42  KATSRASSQVVLHWFRHGDLRLLDNPALIHSSKTAES-CVPVFCFDDSVYGNDNRTPDTR 100

Query: 46  ----EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ 101
                   Q     R++ F+  S+  +++SL  +G                 +D++    
Sbjct: 101 APHSNDRGQLKCGPRRAQFVLDSVQDLRRSLQSRGSALYVAHGKPAQVFQRLVDAWPAVP 160

Query: 102 RVTK---------LFYNRQYEINEVRRDKLLEKRLQHR---VICKSFDDSVLLPPGSIL- 148
                        +   R+    E    + ++  L+ R      +    S +     +  
Sbjct: 161 AADTAAPNGSLLTIVCQREVVREENDAVRAVQSVLRRRFPQAKVQQIWGSTMYELDDLPF 220

Query: 149 -NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM 207
                 M   +TPFR  + +N        +P           P N P       + +  +
Sbjct: 221 ATDLANMPDTFTPFRNKVEKNCQIGTPLPVPKQ------LSLPENFPSALKQGLEYLPTL 274

Query: 208 FPIGEQNAL-HILRKF---------------CKEKVYYYVEQRD-IPAIQGTSQLSPYLS 250
             +G  +A    +                    + +  Y E R+ +     +++ SP+L+
Sbjct: 275 KELGYTDAQIQQVETHDERGVLHFMVAKQPDSHDCLKDYFETRNGMLGPNYSTKFSPWLA 334

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPW 310
            G +SPR    + ++   + +       +  + EL+WR+F +     +            
Sbjct: 335 HGNVSPRYVAAQCRKYEEERV--ENKSTYWVVFELLWRDFCKFFATKHGDAIFYPYGTTE 392

Query: 311 T--EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                  W+     LQAW++G TG+P++DA MR+L   G+M NR R   ASFL  +L  D
Sbjct: 393 RTDRHKPWSTFGRNLQAWQEGRTGYPLVDANMRELVATGFMSNRGRQNVASFLAINLNHD 452

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           WR G ++F S LLD D+ SN   W  AA      +     FN + Q K +D  G ++RHW
Sbjct: 453 WRCGGDFFESHLLDYDVYSNWVNWCAAAGMTGGRLNR---FNISKQSKDYDQHGDYVRHW 509

Query: 429 LPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIV 461
           LPEL  VP +++H P           +  L ++YP PIV
Sbjct: 510 LPELAKVPNEFVHEPWKMTSFQQMEYECKLGVDYPNPIV 548


>gi|329896420|ref|ZP_08271519.1| Deoxyribodipyrimidine photolyase/cryptochrome family protein [gamma
           proteobacterium IMCC3088]
 gi|328921840|gb|EGG29211.1| Deoxyribodipyrimidine photolyase/cryptochrome family protein [gamma
           proteobacterium IMCC3088]
          Length = 499

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 111/490 (22%), Positives = 191/490 (38%), Gaps = 27/490 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A     + +VW + DLR+ D+  L AA   +    + +++  PE       S R   F
Sbjct: 1   MSANEG--LQVVWFKRDLRLEDHAPLAAAA--NGKPTLLLYVFEPELMNDPHYSERHWRF 56

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRR 119
           +  SLL++   L          + S     +E LD+      ++ L  + +  +     R
Sbjct: 57  VTQSLLEMNGRLEPLNQRVYILKGS----MLEVLDAIHAHNPISNLLSHEETGLRVTYER 112

Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           DK +     QHRV  + +  +       +             + + + Q L + +   L 
Sbjct: 113 DKAISTWCRQHRVNWQEYQSN------GVKRGRYSRDGWAHDWHRVMSQPLAEPEWAQL- 165

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ-NALHILRKFCKEKVYYYVEQRDIP 237
           +PA      ++   +       +   DP   +G    A H L  F  E+   Y +    P
Sbjct: 166 LPAEDQQRCLSDYVMESALLKAWSTRDPSHQLGGVGAAQHALESFFDERGKIYHKALSKP 225

Query: 238 --AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
             + +  S+LSPYL+ G LS RQ + RL+ E           A    + L W   +    
Sbjct: 226 LLSRKHCSRLSPYLAWGNLSIRQVYQRLQAERGRSGWGRALSA--LNSRLHWHCHFIQKF 283

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                +   +P      + + +      QAW  G TG P +DA +R L   G++H R R 
Sbjct: 284 ESEDRIEF-EPMNFGYHQFQDDHSLANEQAWATGNTGIPYLDACLRCLQNTGYLHFRGRA 342

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +  S L   +   W+          LD +   +    Q         +   RI+NP  QG
Sbjct: 343 MIVSALCHLMQGRWQFAARQLAQWFLDFEPGIHYAQIQMQVGLT--GINTLRIYNPVKQG 400

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKKACHHTLNQ 473
              DP   FI+ W+PEL+ +P   +H P     +++  + +NYP P++D  +A       
Sbjct: 401 LDHDPDAVFIKKWVPELSELPVPLVHTPWELGPIERACMDMNYPDPVIDIAQAHKAARAL 460

Query: 474 YYAAKKQSLL 483
           Y+  ++  L+
Sbjct: 461 YWDRRQNPLV 470


>gi|332211183|ref|XP_003254698.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2-like [Nomascus
           leucogenys]
          Length = 543

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 104/425 (24%), Positives = 159/425 (37%), Gaps = 25/425 (5%)

Query: 19  RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           RI     L AA   +   V  V+I  P       +   +  F+  SL  +  SL +    
Sbjct: 56  RIHKQPTLLAAVRGARC-VRCVYILDPWFAASSSVGINRWRFLLQSLEDLDTSLRKLNSR 114

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFD 137
               +        +       +  VT+L +    E     RD  + K  +   V   + +
Sbjct: 115 LFVVRG----QPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGVEVVTEN 170

Query: 138 DSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADL-------RSLPVPAIRLTGPVT 189
              L     I+    Q     Y  F+  + +  +           +     A        
Sbjct: 171 SHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDE 230

Query: 190 PSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT---- 242
              +P   +  F  + + P  +  GE  AL  L K  + K +    +R   +        
Sbjct: 231 TYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPRMSANSLLASP 290

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+       P   
Sbjct: 291 TGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYTAATNNPRFD 349

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
             +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL 
Sbjct: 350 RMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLT 408

Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           + DL V W  G   F   LLD D + N G W W  S       +F  + P   G+R DP 
Sbjct: 409 RGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPS 467

Query: 422 GTFIR 426
           G +IR
Sbjct: 468 GDYIR 472


>gi|86140426|ref|ZP_01058985.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
           MED217]
 gi|85832368|gb|EAQ50817.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
           MED217]
          Length = 432

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 110/437 (25%), Positives = 203/437 (46%), Gaps = 26/437 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYAS 64
           +LVW RNDLR+ DN +L+ A  N++  + AV+   P Q+++           ++ F+  +
Sbjct: 3   NLVWFRNDLRVKDNTSLFKASKNAN-LLAAVYCFDPRQFQEDQFGFKKTERFRAQFLIET 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           + ++++ L++  I    +     +   + L     + ++ +LF+  ++   E    + ++
Sbjct: 62  VTELREHLAELNIPIFVYN----EQPEDILPQLIERLQIDQLFFQEEWTSEEQEVTRKVK 117

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +     V      D  L+ P  +   +++ +  V+T +RK   +NL      S+     +
Sbjct: 118 ESCSASVKFTESYDQFLIHPEDLPYKSIEAIPNVFTQWRKKCEKNLNIRKEVSITEFP-Q 176

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKE--KVYYYVEQRD 235
                  ++IP   D   ++  P       F  GEQ AL+ +  +  +  K+  Y + R+
Sbjct: 177 TNFEENSTSIPTLQDLNLESFTPDHRSAFPFKGGEQQALNRIEDYFWQTRKLAVYKKTRN 236

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            +     +S+LS +L+ G +S R  + ++K    +         +    EL+WR+F++++
Sbjct: 237 GLTGKNYSSKLSAWLANGGISARTIYWKIKAFEQE--ETKNESTYWLFFELMWRDFFKYI 294

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              Y         I   +  +W  +    + W  G T +  ++A M+++   GWM NR R
Sbjct: 295 SLKYGDQIFKIGGILEKD-YDWKTNKAAKKEWINGQTKYDFVNANMKEIAATGWMSNRGR 353

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
              AS+  K+L  DWRIG  YF S L+D D+ SN G W + +  GND  P  R FN   Q
Sbjct: 354 QNVASYWAKELQQDWRIGAAYFESMLIDYDVHSNYGNWMYNSGVGND--PRDRKFNIKSQ 411

Query: 415 GKRFDPQGTFIRHWLPE 431
            +R+D  G F R WL E
Sbjct: 412 AERYDGDGKFRRLWLQE 428


>gi|221134514|ref|ZP_03560819.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999]
          Length = 501

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 108/488 (22%), Positives = 204/488 (41%), Gaps = 31/488 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW + DLR+ D+  L    HN    ++ ++I  P+       S R   F+  SL+ +Q 
Sbjct: 7   IVWFKRDLRLRDHAPLCRVMHN-PRPILLLYIFEPDLIHDPHYSERHWRFVVQSLVDLQA 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEKRLQH 129
            LS+    FQ              D+   Q  +  ++ + +  I     RD+ +++    
Sbjct: 66  QLSE----FQTQVLVLQGAVQTVFDTLLSQCDIGNVYSHEEIGIELTYVRDRAMQQY--- 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-ADLRSLPV----PAIRL 184
                         P S++   L   + ++ +   +++      DL ++P        +L
Sbjct: 119 ---FHQHHIKWTETPYSVVRRGLNHRQDWSKYWHEMMEKPCDDPDLAAIPFVSQTMVEQL 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG 241
           T               +    P F   GE+ A H    F  ++   Y      P  + + 
Sbjct: 176 THQALAIQDIELPTPQWSESHPNFQIGGEKRAWHTYYSFLDQRGKSYARHISSPELSRKS 235

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            ++LSPY++ G ++ +Q + +L           K    + ++ L W   +        ++
Sbjct: 236 CTRLSPYIAWGNITIKQTYQKLDTLNEADYQGWKRALSAMVSRLHWHCHFIQKFESECAM 295

Query: 302 CM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            M      +  +  +I+ +  S  L+AWK G TG PI+DA MR +   G+++ R+R +  
Sbjct: 296 EMRPVNHAYQAYPYEIDQDVISRRLKAWKTGTTGIPIVDANMRAVIATGYINFRMRAMLV 355

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S L     +DWR+G ++  +Q LD +   +   +Q     G       R++NP  Q +  
Sbjct: 356 SVLSHHFNLDWRLGVKHLAAQFLDFEPGIHYPQFQMQ--AGVTGTNTIRLYNPIKQSQEK 413

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPH--SWLDKNDLSLN----YPLPIVDHKKACHHTLN 472
           DPQG FI+ W+PEL   P   +H P   S +++    ++    YP P+VD + A     +
Sbjct: 414 DPQGRFIKQWVPELREYPDDMVHTPWAISPMERQLFGIDEAGEYPTPVVDIEDAAKMARD 473

Query: 473 QYYAAKKQ 480
           + ++ +K+
Sbjct: 474 RLWSFQKR 481


>gi|57866289|ref|YP_187945.1| deoxyribodipyrimidine photolyase [Staphylococcus epidermidis RP62A]
 gi|251810120|ref|ZP_04824593.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282875733|ref|ZP_06284604.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis
           SK135]
 gi|293368145|ref|ZP_06614776.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57636947|gb|AAW53735.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus
           epidermidis RP62A]
 gi|251806348|gb|EES59005.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295760|gb|EFA88283.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis
           SK135]
 gi|291317717|gb|EFE58132.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329723282|gb|EGG59812.1| FAD binding domain of DNA photolyase [Staphylococcus epidermidis
           VCU144]
 gi|329735614|gb|EGG71898.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus
           epidermidis VCU045]
          Length = 457

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 142/484 (29%), Positives = 234/484 (48%), Gaps = 41/484 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+ +N        N ++     FI   E++ +      Q  + Y S+ 
Sbjct: 1   MAIGVI-LNRVFRLNNNPLFDYIYSNKESINHCYFIIPTEEFEEEAKKKAQ--YYYGSIQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVR 118
           +    L +  I         F  S + L  +C +Q + K+        +++ +Y+I   R
Sbjct: 58  KFMYELQRYDI-------EPFLMSYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                ++  Q  +   S   +    P    N   + YKV+T F +     L+  D     
Sbjct: 111 -----KRFKQANIQVISLRANHYFNPRKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYH 165

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           +  I  +  V  S      DY    I       E++  +   +F  + +  Y E R+   
Sbjct: 166 LEDI--SKVVVKSQHKIKEDYHSYGIS------ERDVQNRWSEFLSQDIENYKENREYLP 217

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TSQLS YL+ G++   Q +N L + +     K +    +++ ELI+REFY  LM  Y
Sbjct: 218 EVLTSQLSIYLAYGMIDIIQVFNDLLQNY----DKNEQNYETFIRELIFREFYYVLMTNY 273

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P       F    ++++W+ +    + WK G TGFPIIDAAM +L T G+MHNR+RM+ +
Sbjct: 274 PETA-HVAFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVS 332

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL KDL +DW  GE +F  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RF
Sbjct: 333 QFLTKDLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERF 392

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQ 473
           D    +I+ ++P LN V  +Y+H  H +  +      ++  +YP  ++DHK++    +++
Sbjct: 393 DNNARYIKTYIPRLNQVDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSE 452

Query: 474 YYAA 477
           + A 
Sbjct: 453 FKAL 456


>gi|322698418|gb|EFY90188.1| cryptochrome-2 [Metarhizium acridum CQMa 102]
          Length = 604

 Score =  282 bits (722), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 126/545 (23%), Positives = 192/545 (35%), Gaps = 89/545 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA       +  +F   P    +      +  F+  S+ ++  
Sbjct: 7   VYWFRTDLRLHDSPALKAALDLEPDVLWPIFTWDPYYVYRARGGTNRWQFL--SITKLNP 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
               K  V +       +             +VT L + +  +    +RD ++ K  +  
Sbjct: 65  --KSKLFVLR-------EAPQTLFPKLLKAWKVTHLVFEKDTDAYARQRDDVVAKAAKEA 115

Query: 130 RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR----- 183
            V         L     I+ +H  +     T    A  +        + P          
Sbjct: 116 GVEVVIRSGRTLWDSDEIVAHHDGKPTMSMTQLLSAAKKVGQVPRPIAAPKGLPDPGDMP 175

Query: 184 ----------------------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215
                                       + GP     I    +  F A    +  GE  A
Sbjct: 176 LDFEQHVPSNAPDVNAQAREKKDTAYKSIAGPKGDFAIETLEELGFPAATTPYRGGESIA 235

Query: 216 LHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           L  L +  + K Y   + + +  PA    Q T+ LSP+L  G LS R+ + R+++     
Sbjct: 236 LKDLAEIIENKKYTATFEKPKTSPAQFEPQSTTLLSPFLHFGALSVREFYWRVQDVVEAY 295

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-------------- 316
                +   S   +LI+R+ Y    A   +        P+   I W              
Sbjct: 296 GKGASTPPASLTGQLIFRDMYFAAQAAVGAKFTQTAGNPYCRFIPWHLPSERDSQTGLVT 355

Query: 317 -------NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVD 368
                  +      Q WK+G TGFP IDA MRQL   GWMH+  R   A FL +    VD
Sbjct: 356 DKYKVDSDDAEKWFQRWKRGVTGFPWIDALMRQLVHTGWMHHLGRHSVACFLTRGGCYVD 415

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W  G E F   LLD + A N G WQW  S       YFR ++P   G+++D  G  IR W
Sbjct: 416 WERGAEVFEVHLLDHEPACNAGNWQW-LSCTAFFSQYFRCYSPVSFGQKWDKNGDLIRKW 474

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN---------------YPLPIVDHKKACHHTLNQ 473
           +PEL N+ ++YI+ P     ++                    YP P+ D  K     +N 
Sbjct: 475 VPELKNLDSKYIYEPWKAPIQDQKKAGVRVVGDGLDDQEQGTYPKPMFDFGKRRETCINA 534

Query: 474 YYAAK 478
              A 
Sbjct: 535 MKIAY 539


>gi|242242053|ref|ZP_04796498.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           W23144]
 gi|242234492|gb|EES36804.1| deoxyribodipyrimidine photo-lyase [Staphylococcus epidermidis
           W23144]
          Length = 457

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 138/484 (28%), Positives = 234/484 (48%), Gaps = 41/484 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    RI +N        N ++     FI   E++ +      Q  + Y S+ 
Sbjct: 1   MAIGVI-LNRVFRINNNPLFDYIYRNKESINQCYFIIPTEEFEEEAKKKAQ--YYYGSIQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVR 118
           +    L +  I         F  S + L  +C +Q + K+        +++ +Y+I   R
Sbjct: 58  KFMYKLQRYDI-------EPFLMSYDKLIDFCKKQTIDKVVVAGDIMSYHHEEYDILHQR 110

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                ++  Q  +   +   +    P    N   + YKV+T F +     L+  D     
Sbjct: 111 -----KRFKQADIQVITLRANHYFKPCKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYH 165

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           +  I      +   I   +          + I E++  +   +F  + +  Y E R+   
Sbjct: 166 LEDITKVAVKSQHKIKEDYH--------SYGISERDVQNRWSEFLSQDIENYKENREYLP 217

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TSQLS YL+ G++   Q +N L + +     K +    +++ ELI+REFY  LM  Y
Sbjct: 218 EVLTSQLSIYLAYGMIDIIQVFNDLLQNY----DKNEQNYEAFIRELIFREFYYVLMTNY 273

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P       F    ++++W+ +    + WK G TGFPIIDAAM +L T G+MHNR+RM+ +
Sbjct: 274 PETA-HVAFKEKYQQLKWSYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVS 332

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL KDL +DW  GE +F  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RF
Sbjct: 333 QFLTKDLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERF 392

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQ 473
           D    +I+ ++P+LN +  +Y+H  H +  +      ++  +YP  ++DHK++    +++
Sbjct: 393 DNNARYIKTYIPKLNQIDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSE 452

Query: 474 YYAA 477
           + A 
Sbjct: 453 FKAL 456


>gi|206900389|ref|YP_002249959.1| deoxyribodipyrimidine photolyase [Dictyoglomus thermophilum H-6-12]
 gi|206739492|gb|ACI18550.1| deoxyribodipyrimidine photolyase [Dictyoglomus thermophilum H-6-12]
          Length = 433

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 140/468 (29%), Positives = 217/468 (46%), Gaps = 42/468 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L     DLRI DN A   AC +S  +++ ++I       +H  +     F+ ++L  V  
Sbjct: 6   LFLFYRDLRIKDNTAFIKACEDSK-EIVPLYILE-----RHNFNKYSFEFVISALGYVNF 59

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ G      +    +++ E+L     +     ++ ++ Y  +   ++KLL    + +
Sbjct: 60  ELNKLGSFLYLVERGFNEETFEFLRE---KIGFDAIYLSKDYLWSFEEKEKLLRNFCREK 116

Query: 131 VI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  + F+ + L+ P  I        KV+TPF K     L   ++R       +L  P+ 
Sbjct: 117 GIELRFFEGNFLVSPNLI-----SQTKVFTPFFKKWSAYL--GEIRRKDFNFSKLNTPIL 169

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             +    F++  +    +   G       L  F       Y E+RD+    GTS+LS Y+
Sbjct: 170 ELSKFEDFEFSKKVRLDLIEWGF----KRLESF---DFDVYDEKRDLLYCDGTSKLSAYI 222

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           + GV+S    + ++K           S +  +L EL +REF+ H+   +P       F  
Sbjct: 223 NYGVISIYDVYEKVK----------NSKSSQFLRELAFREFWYHIRMHFPE-TRNLEFQE 271

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
            T  IEW      ++ ++   TG+PI+DA +R L T GW+HNRLRMI ASF  K LL DW
Sbjct: 272 KTRNIEWLYREDWIRKFENAETGYPIVDAGIRCLKTEGWLHNRLRMILASFFTKTLLHDW 331

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           RIGEE+F   L+D D   N   WQW+AS G D  P  RIFNP IQ  +FDP   FI+ +L
Sbjct: 332 RIGEEFFKDYLVDYDEVLNIQNWQWSASVGADPRP-LRIFNPMIQSSKFDPYCEFIKKYL 390

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           PEL +   + IH P  +  K      Y  P+VD        + +Y   
Sbjct: 391 PELKDEDCRKIHDPLKYKLK------YYTPMVDFYAQKELAIRKYKKI 432


>gi|254421675|ref|ZP_05035393.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
           7335]
 gi|196189164|gb|EDX84128.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
           7335]
          Length = 550

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 122/498 (24%), Positives = 201/498 (40%), Gaps = 51/498 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +VW R DLRI D++ LY A       ++ VF+      +     + +  F+ + L 
Sbjct: 1   MNRTVVWFRRDLRIADHEPLYRAARRG--LIVPVFVFDRALLKHPETGSGRVRFMLSCLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125
            + + L  +G            D +E L     + +   ++    YE I    RD  L +
Sbjct: 59  ALDEDLRSRGGRLILRSG----DPVEVLPKLVRETQSDGIYSYIDYERIYGRVRDARLNQ 114

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L +  +  + F+                   V  P  + L    V++     P   I +
Sbjct: 115 ALTREGLKVRWFE-----------PLGGTPDLVPYPDYRQLWYQSVRSPQIPTP-QKIEV 162

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVY-YYVEQRDIPAIQGT 242
              ++   +P        +   + P  G   A  +L  F  E+    Y  Q   P+   T
Sbjct: 163 PPDISSDELPSLEAVGHISDGMLVPQGGTIEARKLLNLFFDERKAQRYYWQLSYPSANAT 222

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLL----IKPKSGAFSWLNELIWREFYRHLMAFY 298
           S LSPYL  G +S R+C   + +   D       + +  A   L+ L W   +     + 
Sbjct: 223 SGLSPYLKYGAISIRECAQTIWDRQADPRWWTDKRVERSAHQLLSRLRWGSGFTQRFRYL 282

Query: 299 PSVCMGKPFIPW-------------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           P + +   + P+              +   W+ +    +AWK G TG+PIIDAA R L  
Sbjct: 283 PQLEVRSLYTPFETGPSDSLLPAEELQNGGWDDNFEHYEAWKNGETGYPIIDAAARCLKE 342

Query: 346 I-GW--MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW-QWAASTGND 401
             GW  ++ R+R I ASFL   + +DWR G  +FM  L+DGD   ++  W Q A  T   
Sbjct: 343 TGGWLALNFRVRAIYASFLCNLIGMDWRYGALHFMRYLIDGDCPIDHYQWAQQAGVTHCL 402

Query: 402 SVPYFRIFNPTIQG-KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           +  + RI+NP  +   R DPQG F+  WLPEL ++  + +  P            YP PI
Sbjct: 403 NKAWIRIYNPQQEAIDRCDPQGRFVYRWLPELRHLKPEQLGTPPKV-------KGYPQPI 455

Query: 461 VDHKKACHHTLNQYYAAK 478
           +++ +A      +    +
Sbjct: 456 LNYAQARDRRTKRIDDLR 473


>gi|329736816|gb|EGG73081.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus
           epidermidis VCU028]
          Length = 457

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 142/484 (29%), Positives = 233/484 (48%), Gaps = 41/484 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+ +N        N ++     FI   E++ +      Q  + Y S+ 
Sbjct: 1   MAIGVI-LNRVFRLNNNPLFDYIYSNKESINHCYFIIPTEEFEEEAKKKAQ--YYYGSIQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL--------FYNRQYEINEVR 118
           +    L +  I         F  S + L  +C +Q + K+        +++ +Y+I   R
Sbjct: 58  KFMYELQRYDI-------EPFLMSYDKLIDFCKKQAIDKVVVAGDIMSYHHEEYDILHQR 110

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
                ++  Q  +   S   +    P    N   + YKV+T F +     L+  D     
Sbjct: 111 -----KRFKQANIQVISLRANHYFNPRKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYH 165

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           +  I  +  V  S      DY    I       E++  +   +F  + +  Y E R+   
Sbjct: 166 LEDI--SKVVVKSQHKIKEDYHSYGIS------ERDVQNRWSEFLSQDIENYKENREYLP 217

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              TSQLS YL+ G++   Q +N L + +     K +    +++ ELI+REFY  LM  Y
Sbjct: 218 EVLTSQLSIYLAYGMIDIIQVFNDLLQNY----DKNEQNYETFIRELIFREFYYVLMTNY 273

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P       F    ++++W  +    + WK G TGFPIIDAAM +L T G+MHNR+RM+ +
Sbjct: 274 PETA-HVAFKEKYQQLKWFYNEENFKLWKDGNTGFPIIDAAMEELKTTGFMHNRMRMVVS 332

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            FL KDL +DW  GE +F  +L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RF
Sbjct: 333 QFLTKDLFIDWIWGESFFKQKLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERF 392

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQ 473
           D    +I+ ++P LN V  +Y+H  H +  +      ++  +YP  ++DHK++    +++
Sbjct: 393 DNNARYIKTYIPRLNQVDAKYLHDTHKFEQQIKGQGVEIGKDYPKQMIDHKESRQRVMSE 452

Query: 474 YYAA 477
           + A 
Sbjct: 453 FKAL 456


>gi|317036499|ref|XP_001397458.2| DNA photolyase [Aspergillus niger CBS 513.88]
          Length = 641

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 125/580 (21%), Positives = 200/580 (34%), Gaps = 103/580 (17%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   +A +V + W R DLR+ DN AL AA   + +  I +F   P    Q  +   +  F
Sbjct: 1   MPPQSAPTV-IFWHRTDLRLHDNPALQAALSLNPSTFIPIFTWDPHYAYQVRVGPNRWRF 59

Query: 61  IYASLLQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           +      + +S  +          +    +               T L +    +     
Sbjct: 60  LLECQNDLSQSYRKLNPKQKLWVVR----EAPQTVFPKLFKAWGATHLVFESDTDGYARE 115

Query: 119 RDKLLEKRLQHRVICKSFD-DSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRS 176
           RD+ + K      +         L     ++     +         KA+ Q       R 
Sbjct: 116 RDETIRKLANEAGVEVIVKSGRTLFDSDEVVKQNKGEPTMSIHQVEKAIEQINNGVPDRP 175

Query: 177 LPVPAI-----------------------------------------RLTGPVTPSNIPR 195
           +  P                                            + GP    +IP 
Sbjct: 176 VDAPERIPDPLGEEKMRDISGLEHEVPDHEDDINAAHRTKHNDNQYNNIAGPKGDFSIPT 235

Query: 196 FFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYY---YVEQRDIPAI---QGTSQLSP 247
             +          P   GE  AL +L  + ++   Y   + + +  PA    Q T+ LSP
Sbjct: 236 LDELSIDPSQATSPHHGGESIALEMLTTYLQQNEDYIATFEKPKTSPAAFHPQATTLLSP 295

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSG---AFSWLNELIWREFYRHLMAFYPSVCMG 304
           +L  G LS R+ W+ +++         K       +   +L++RE +    A    V   
Sbjct: 296 HLHFGSLSVRKFWHDVQDTLQQRESAHKPTSDLPTNLPGQLLFREMFFAAQAALGPVYAQ 355

Query: 305 KPFIPWTEKIEW----NKDSH-----------------LLQAWKQGYTGFPIIDAAMRQL 343
                    + W    N D                     + WK+G TGFP IDA MRQL
Sbjct: 356 TRGNKIVRFVPWHLQSNHDKETGLVDRTYTVDDEQAEVWFRRWKEGRTGFPWIDALMRQL 415

Query: 344 NTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
              GW+H+  R   A FL +    V W  G E F   L+D + ASN G W W + T   +
Sbjct: 416 KNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMWLSCTAFFT 475

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLN- 455
             Y R ++P   GK++DP+G FIRH++PEL +   +YI+ P           K  ++ + 
Sbjct: 476 Q-YNRCYSPVAFGKKWDPEGRFIRHYIPELEHYDKKYIYEPWKAPLEDQKRWKCRVTGDG 534

Query: 456 ------------YPLPIVDHKKACHHTLNQYYAAKKQSLL 483
                       YP P+ D  +     + Q   A +  L+
Sbjct: 535 MVEKDEETGLRAYPEPMFDFDERRQTCIAQMKEAYEVHLM 574


>gi|303279002|ref|XP_003058794.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459954|gb|EEH57249.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 527

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 124/533 (23%), Positives = 209/533 (39%), Gaps = 71/533 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL+AA       V+A ++  P +  +         +++ +L  + +
Sbjct: 3   VVWFRQDLRVRDNPALHAAARTG-RPVVAAYVWCPREEGRWPTGGAARVWLHHALDGLTR 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
           +L++        + +    S E L           ++ NR YE  ++ RD   EK L   
Sbjct: 62  TLTRTYGAVLVLRDATRTSSFEELRDVARACGAKDVYANRVYEPWKIARDDTCEKALASE 121

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPF-----------------------RKAL 165
             +  +SF+  VL  P      A       + +                           
Sbjct: 122 CGIRYRSFNAGVLYEPWDARPDATDDACWNSGYGSVRFFLRACAALGEPPPPLPAPASMR 181

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
            +  V+   RS+ + ++ L             D+    I   +  GE  A   LR F  E
Sbjct: 182 ARLPVERRPRSVALESLGLAKMPRRRGGGGVIDW-AAGIRDAWTFGEDGADASLRAFLAE 240

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
            + ++  +R   A   T+++SPY+  G LS R+ +   K   V         A  +L  L
Sbjct: 241 GLAHFDAKR---ADATTARISPYVRHGELSVREVYRAAKAASVGSRKSQARSAGVFLRRL 297

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTE----KIEWNKDS--------------------- 320
            WR+     +  +P +   +P  P        + W+ D                      
Sbjct: 298 AWRDLAYWSLWRFPHLA-DEPLRPQYASQWWAVPWDPDPRGRGDSVPRAVSIVRRRWDVF 356

Query: 321 ------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                   L+AW++G TG+P++DAAMR+L   G++ N +R + A FL++ L +DWR G+ 
Sbjct: 357 APCSNDANLRAWQRGITGYPLVDAAMRELWITGYIPNYMRHVVAGFLIEYLNIDWRHGQL 416

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
           +F   L+D D+A     WQ    +G D   +  + +P    K  DP G ++R W PEL+ 
Sbjct: 417 WFHDTLVDADVAIQGFMWQNGGHSGMDQWNF--VMHPVYAAKSADPDGEYVRRWCPELSK 474

Query: 435 VPTQYIHAPHSWLDKN------DLSLNYPLPI-VDHKKACHHTLNQYYAAKKQ 480
           +P  Y H P              L   YP  + VD + A   +L      ++ 
Sbjct: 475 LPRDYAHCPWEAPATTLARAGVALGREYPKRVLVDLEGARLKSLRAVVEVRRA 527


>gi|326501158|dbj|BAJ98810.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 583

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 175/372 (47%), Gaps = 19/372 (5%)

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG- 186
              ++ +SF+  +L  P  + +   Q + ++ PF    +          LP   I     
Sbjct: 4   SEGIVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRINSGDL 63

Query: 187 PVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            + PS+   F D   +  + +    +  G QNA   L  F    +  Y   R       T
Sbjct: 64  SMCPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSANT 123

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFY 298
           S LSPYL  G LS R+ ++ ++ + +    +    A      +L  +  RE+ R+L   +
Sbjct: 124 SLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCFNH 183

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R++ +
Sbjct: 184 P-CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 242

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  DS     I NP ++G +F
Sbjct: 243 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKF 302

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC---HH 469
           DP G ++R WLPEL  +PT++IH P             +L  NYPLPIV+   A      
Sbjct: 303 DPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRLQE 362

Query: 470 TLNQYYAAKKQS 481
            L++ +  +  S
Sbjct: 363 ALSEMWQLEAAS 374


>gi|86131286|ref|ZP_01049885.1| cryptochrome, DASH family [Dokdonia donghaensis MED134]
 gi|85818697|gb|EAQ39857.1| cryptochrome, DASH family [Dokdonia donghaensis MED134]
          Length = 432

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 110/440 (25%), Positives = 194/440 (44%), Gaps = 26/440 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFI 61
           M   LVW RN+LR+ DN +L AA      +V+ V+   P  + +           ++ F+
Sbjct: 1   MDTALVWFRNNLRVQDNASLTAAIATGK-RVVGVYYFDPRHYEEGDFGFKKTEKYRAKFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             ++  ++ +L ++ I    +     +     + SY    +VT L   +++   EV+   
Sbjct: 60  IETIENLKANLDKRNITLLVYNLKPEEHITSVVKSY----KVTSLHSQKEWTAEEVKVTN 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVP 180
            +E+ +   V  +   D  L  P  I  + + ++ K++T FRK   +      +      
Sbjct: 116 AVERAIPE-VSHELVYDQFLFHPDDIPFNTITEVPKIFTQFRKKCEKESDVRPIFKELTA 174

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAI------DPMFPIGEQNALHILRKFCK--EKVYYYVE 232
             +     T + I    D               +  GE  A   L  +    +K+ YY +
Sbjct: 175 LPQENILTTVTPISTLEDLGLDTFVKDHRTAFPWEGGEDAAWARLNDYFWTTQKLAYYKK 234

Query: 233 QRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+    +G +S+LS +L+ G +S RQ + ++K    ++  K     +  + ELIWR+++
Sbjct: 235 TRNGLIGEGYSSKLSAWLANGSISARQIYWKVKRFEKEV--KKNQDTYWLIFELIWRDYF 292

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +++   +         I   ++ +W  ++   + W  G T +  ++A M +L   GWM N
Sbjct: 293 KYVSLKHGDNIFKIGGI-LNKEYDWKHNNKAQREWINGNTKYDFVNANMIELKETGWMSN 351

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R   ASF  K+   DWR+G  YF S L+D D+ SN G W + A  GND  P  R FN 
Sbjct: 352 RGRQNVASFWAKEQEQDWRVGAAYFESILIDYDVHSNWGNWMYNAGVGND--PRDRKFNI 409

Query: 412 TIQGKRFDPQGTFIRHWLPE 431
             Q   +D  G ++R W  E
Sbjct: 410 KRQQDMYDGSGKYVRLWTQE 429


>gi|126666531|ref|ZP_01737509.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17]
 gi|126628919|gb|EAZ99538.1| deoxyribodipyrimidine photolyase, putative [Marinobacter sp. ELB17]
          Length = 500

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 111/485 (22%), Positives = 196/485 (40%), Gaps = 33/485 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           ++ VW + DLR+ D+  L AACH +   V+ +++  P Q +   +S R   FI  S+  +
Sbjct: 8   INAVWFKRDLRLADHAPLQAACH-AGLPVMLLYMVEPSQRQNPHLSLRHWRFIMKSISDM 66

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKRL 127
              L++ G   +        + IE L     +  +  LF + +        RD+ +    
Sbjct: 67  NLQLNRAGC--EAGVALVHGECIESLTRLQQRYSLHTLFSHEETGDASTFERDQQVAHWC 124

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           Q + V  + F  +      +++            +++ +      ADLR L V       
Sbjct: 125 QQQDVNWQEFTTN------AVIRGVFNRDGWDRHWQQVMGAPQQNADLRQLRVIRPTALP 178

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
              P +  +      QA       GE  A   +  F   +  +Y      P  +    S+
Sbjct: 179 DWQPPSEWQ------QANSQFQTGGELAANQWMESFFNARGRFYSGSVSSPIASRTFCSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL+ G +S RQ + + +               ++ + L W   +        +    
Sbjct: 233 LSPYLAFGNISLRQAYQQYRANRQKAGWD--RSLRAFASRLHWHCHFIQKFESECA-MEQ 289

Query: 305 KPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           +P         +  D      L AW+ G TG+P++DA MR L   G+++ R+R +  SFL
Sbjct: 290 RPVNRGYLTYPYRTDDGVNADLAAWQDGRTGYPLVDACMRCLQATGYINFRMRAMLVSFL 349

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              L +DW+ G  +     LD +   +   +Q     G   +   RI+NP +Q +  DPQ
Sbjct: 350 CHLLNIDWQRGVHHLARLFLDYEPGIHYSQFQMQ--AGLTGINTIRIYNPVLQSQEQDPQ 407

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           GTFIR W+PEL  +P   +H P       +      +S +YP P+ +   A     ++ +
Sbjct: 408 GTFIRQWVPELAELPDTLLHQPWLLTPMEEQMFDLQISQHYPAPLFELAPAYAAARDRLW 467

Query: 476 AAKKQ 480
             + +
Sbjct: 468 DWRSR 472


>gi|71009567|ref|XP_758291.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
 gi|46098033|gb|EAK83266.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
          Length = 684

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 120/572 (20%), Positives = 204/572 (35%), Gaps = 105/572 (18%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R DLR+ D+ AL AA     A +  V+   P    +H +   +  F+  S++ + K
Sbjct: 8   LYWFRTDLRLHDSPALQAALDLKPAALFPVWCWDPNYVYKHRVGVNRFRFLLESMIALSK 67

Query: 71  SLS--QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL-EKRL 127
           +++  Q        +     +  E L     +  +T L + +       RRD+L+ E   
Sbjct: 68  NITSTQSNSQLLVVRG----EPTELLPELWKRWSITHLVFEKDPSAYGRRRDQLILEAAE 123

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----LRSLPVPAI 182
           +  V   +     L  P  ++N       +     + ++ ++            LP+P +
Sbjct: 124 KSNVKVVAVQGHHLYDPEQVVNKNKGKPTMSMSTLQKIVADMGDVPKPIDAPEDLPLPTL 183

Query: 183 RLTGPVT-----PSNIPRFFDYPF------------------------------------ 201
           + +   +     P         P+                                    
Sbjct: 184 KDSKSKSLQDTLPELARSLEGLPYYTGKGREGPESIDLNSTELGGQRDKKVSCYDTVQGE 243

Query: 202 -----------------QAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPAI--- 239
                              +      GE  AL  L   CK+  Y   + + +  P     
Sbjct: 244 ASELFSAPTLASLGMDASKVKDTIKGGEPIALEKLANICKDAKYVATFAKPKTSPGQSAE 303

Query: 240 -QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              T+ LSPYL  G LS R+ W   +E         K+G    LN  +          + 
Sbjct: 304 DPSTTLLSPYLKFGCLSVRKLWWDAEEAKNRYKGGSKTGPPENLNGQLLFRDMYACAEYA 363

Query: 299 PSVCMGK-------PFIPWTEKIEWNKD--------------SHLLQAWKQGYTGFPIID 337
                G+        ++ W     ++++                 L A+K G TGFP ID
Sbjct: 364 IGDAFGRVRGNEVCRYMDWYLPTHYDENGEVVLPRPAGDAVSEARLSAYKLGQTGFPWID 423

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           A MRQL   GWMH+  R   A+FL +    + W  G E F   L+D D  SN G W W +
Sbjct: 424 ALMRQLRLEGWMHHLGRHSVAAFLTRGQCWISWERGAEIFDEYLIDWDPCSNPGNWMWLS 483

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------N 450
            +   +  YFR++       ++D  G  +R + PEL   P +YI+ P +   +       
Sbjct: 484 CSAFFTQ-YFRLYGLATFPAKYDKTGALVRKYCPELAKFPDKYIYEPFNAPKEVQQKAGC 542

Query: 451 DLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
            +  +YPLP++D K+A    + +     + +L
Sbjct: 543 IIGKDYPLPMLDEKEAKAENMARMKICYQANL 574


>gi|89890451|ref|ZP_01201961.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
 gi|89517366|gb|EAS20023.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
          Length = 442

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 120/448 (26%), Positives = 198/448 (44%), Gaps = 37/448 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-------------AR 56
           +LVW RNDLR+TDN +L  AC N D KVI ++   P  ++                    
Sbjct: 3   NLVWFRNDLRVTDNHSLKKACDN-DGKVIGIYCFDPIFYQNSNFGLDIDLELPFGKTGKF 61

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           ++ FI  ++  ++K L + GI    +     D  +        +  +T ++  +++  +E
Sbjct: 62  RAQFIIEAIEDLRKQLDKHGIPLLVYH----DSPVNVFPDIIKEYDITNIYLQKEWTRDE 117

Query: 117 VRRDKLLE---KRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQA 172
           V ++ LL    K L+ +       D  L  P  +     Q +  V+T FRK   +     
Sbjct: 118 VEQENLLGTALKLLEVKPKGHRTYDQFLYHPHDVPYSNFQEIPTVFTQFRKKCEKESHIR 177

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKE- 225
            L  +      L   V  + IP+  D   ++ +        +  G   A   L  +  + 
Sbjct: 178 TLVDIKDYQQELP-SVVSTTIPQLEDLGLESFEKDHRSAFPWKGGAIAAWERLNHYFWDT 236

Query: 226 -KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
            K+ YY + R+ +  I  +S+LS +L+IG +S R+ +  ++    ++  K     +  + 
Sbjct: 237 GKLQYYKKTRNGLVGIDYSSKLSTWLAIGCISAREIYWEVQRFEKEV--KKNQDTYWLIF 294

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           ELIWR+F++++     +       I   ++ EW      L  W  G T    ++A M++L
Sbjct: 295 ELIWRDFFKYVSLKNGNDIFKLGGI-LHKEYEWKSSERELSKWINGETHERFVNANMKEL 353

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWM NR R   AS+       DWRIG  YF   L+D D+ SN G W + +  GND  
Sbjct: 354 AATGWMSNRGRQNVASYWSMHKEQDWRIGAAYFEHILIDYDVHSNYGNWMYNSGVGND-- 411

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           P  R FN  +Q  R+D  GT+ R WL E
Sbjct: 412 PRNRTFNIELQASRYDSDGTYQRMWLQE 439


>gi|330825550|ref|YP_004388853.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans
           K601]
 gi|329310922|gb|AEB85337.1| DNA photolyase FAD-binding protein [Alicycliphilus denitrificans
           K601]
          Length = 516

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 98/493 (19%), Positives = 174/493 (35%), Gaps = 30/493 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW + DLR+ D+  L  A  +    V+ +++  P  W Q   + +   F+  SL 
Sbjct: 1   MSYTVVWFKRDLRVHDHAPLVHAAAHG--PVLCLYVVEPSLWAQPDSALQHYQFLRESLR 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR-RDKLLEK 125
            + + L   G   Q        +  E L      Q   +L  + +        RD  + +
Sbjct: 59  DLAQQLRSCGARLQL----ALGEVPEVLARLHALQPFARLVSHEETGNGATYARDLAVAR 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             + + +           P   +   L   + +    +A +Q           + +I L 
Sbjct: 115 WCRRQGVAWQEW------PQHGVVRRLPSRERWHGLWQAHMQAPCLPPPLPASLRSISLP 168

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
              T                     G      +L  F   +  +Y      P  A    S
Sbjct: 169 WSDTWPAPETMELADAHDPPQRQRGGRTPGQQVLHDFLHMRGAWYRGGISSPLTAPTACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-------KSGAFSWLNELIWREFYRHLMA 296
           +LSPYL++G L  R+     +   V L           + G  ++++ + W   +   + 
Sbjct: 229 RLSPYLALGCLGMREVVQATQLRQVQLKSADDPRAARLRQGLAAFMSRMHWHCHFIQKLE 288

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P +        +    E+  +     A + G TG+PI+DA +  L   GW++ R+R +
Sbjct: 289 SEPELEWRNLHRGYDGLREYAWNPAHFDALQAGQTGWPIVDACVAMLRETGWVNFRMRAM 348

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             S     L + WR    +   Q LD +   +    Q     G   +   R++NP  Q +
Sbjct: 349 LVSVAAYPLWLHWRPVGLWLARQFLDYEPGIHWS--QMQMQAGTTGINTTRVYNPIKQAQ 406

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHT 470
             DP G F+R WLP L  VP  ++  P              +  +   P+VD   A    
Sbjct: 407 DHDPHGVFVRRWLPALRRVPDAWLFEPWRMAPDVQARCGVRVGQDIAAPLVDLASATKAA 466

Query: 471 LNQYYAAKKQSLL 483
             + +A + Q  +
Sbjct: 467 KARIHALRNQEPI 479


>gi|330915233|ref|XP_003296949.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
 gi|311330639|gb|EFQ94953.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
          Length = 655

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 112/553 (20%), Positives = 186/553 (33%), Gaps = 86/553 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA   +   +  ++   P    +  +   +  ++      + K
Sbjct: 7   IYWFRTDLRLHDSPALKAALDLNPTCLYPIWTWDPHYVYRARVGPNRWQYLLDCQNDLSK 66

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KLLEKRL 127
           S+++          +    +             ++T L + +  +     RD K+LE   
Sbjct: 67  SITKLNPKSKLFVIR----EAPQTLFPKLFKAWKITHLVFEKDTDAYARERDDKVLEIAK 122

Query: 128 QHRVICKSFDDSVLLPPGS-ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--- 183
           +  V         L  P   ++ +  +     T  + A  +          P        
Sbjct: 123 KAGVEVVVKTGRTLYDPDELVMQNHGKPTMSITQVQAAGKKIGRIPRPIPAPKSIPNPGD 182

Query: 184 ------------------------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213
                                         L GP +   +P   +   +        GE 
Sbjct: 183 TDLKFDQERPESQPDVNAIQRDGHEASYTALAGPNSDFAVPTMEELGLKPATTAHRGGET 242

Query: 214 NALHILRKFC--KEKVYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
            AL  L +    +E    + + +  P     Q T+ LSP++  G LS R  + R ++   
Sbjct: 243 EALRALDEIIANEEYTATFEKPKTAPTAFEPQSTTLLSPHMHFGSLSCRLFYWRAQDVVD 302

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN----------- 317
               K      S   +L++R+ Y    A            P    I W+           
Sbjct: 303 KFKGKASQPPVSLTGQLLFRDMYFGAQAALGYSFGQTYNNPNCRFIPWHLPSKIDTKSGL 362

Query: 318 ----------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366
                     +     Q WK G TGFP IDA MRQL   GW+H+  R   A FL +    
Sbjct: 363 ITGEYMVDNAEAETHFQRWKHGQTGFPWIDALMRQLAQEGWIHHLGRHAVACFLTRGGCY 422

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +DW  G E F   L+D + A N G WQW  S       ++R ++P    +++D +G F+R
Sbjct: 423 IDWERGAEVFEEWLIDHEAACNIGNWQW-LSCTAFFAQFYRCYSPIAFPQKWDKEGEFVR 481

Query: 427 HWLPELNNVPTQYIHAPHS-----------------WLDKNDLSLNYPLPIVDHKKACHH 469
            ++PEL     +YI+ PH                            YP P+ D  +    
Sbjct: 482 KYVPELARFDKKYIYEPHKAPIVDQKKWGCLIKGDGLAAAEGSMKTYPKPMFDFAQRRDI 541

Query: 470 TLNQYYAAKKQSL 482
            L     A   +L
Sbjct: 542 CLAGMKNAYHVNL 554


>gi|329910859|ref|ZP_08275394.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546064|gb|EGF31136.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 498

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 182/490 (37%), Gaps = 33/490 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + +VW + DLRI D+  L  A       V+A+F+  PE       SA    FI   L  +
Sbjct: 1   MEIVWFKRDLRIRDHAPLADAVAAG--PVLALFLHEPEIILAPDFSAAHGAFIRECLDSL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRL 127
             +L ++G             + + L+    QQ    L  +++       +RD+ +    
Sbjct: 59  HAALQERGGEL----VEMTGSAPDMLEQIWQQQPFATLRSHQETGNRASYQRDEQVAAWC 114

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + R +          P   ++    Q  +    +   L        ++           P
Sbjct: 115 RKRGVTWRQS-----PQNGVIR--GQEARAKRDWIAELDDYSSSEPVKPPRHIVPSKLPP 167

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
           +    +             M   G   A+ +L  F + ++  Y      P  A  G S+L
Sbjct: 168 MLTGPVAPLQAAGHDKPGRM-KGGRAEAIGLLTAFIRTRILRYPYAISSPITAEHGCSRL 226

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS--------WLNELIWREFYRHLMAF 297
           SP+L+ GV++ R+    +        +                + + L WR  Y   M  
Sbjct: 227 SPFLAYGVITMREIVLAMNRRVDSAELAVNEAERERLISALRFFADRLRWRAGYFQNMES 286

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +             E   D      W++G TG+P++DAAM+ L+  GW++ R+R + 
Sbjct: 287 MPRLEFDNIHSGMNGLREGEFDPVFFARWREGETGYPMVDAAMKMLHHTGWLNMRMRGML 346

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SF V +L + WR    +   + +D + A +    Q     G         +NP  Q + 
Sbjct: 347 LSFAVNELWLHWREPALFLAREFVDYEPAIHYN--QMQIHAGTAGAGSMLAYNPVKQAQE 404

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTL 471
            DP+G F+R WLP L  VP  YI  P +            +  +YP P+VDH  A     
Sbjct: 405 LDPKGIFVRRWLPALRAVPDAYIFTPWTMPPAVQTACGVAIGSDYPAPLVDHLDAARQAR 464

Query: 472 NQYYAAKKQS 481
           ++   A+  +
Sbjct: 465 SRVADAQIAA 474


>gi|88802284|ref|ZP_01117811.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P]
 gi|88781142|gb|EAR12320.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P]
          Length = 436

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 117/435 (26%), Positives = 202/435 (46%), Gaps = 23/435 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIY 62
           +  ++W RN+LR+ DN++L  A  N  +KVIAV+   P+ ++          + ++ F+ 
Sbjct: 7   NTGVIWFRNNLRVQDNQSLTKAIENH-SKVIAVYFFDPKLFKIDSFGFQKTASFRTKFLI 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            ++  ++K+L+   I    +  S  +       + C +  V  ++  +++   E+  D  
Sbjct: 66  ETITDLKKNLAALNITLLTYMESPENKM----HTLCDEFSVGTIYTQKEWTREEIATDNF 121

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV---QADLRSLPV 179
           ++  L   V   +  D  L  P ++     ++  V+T FRK + + +    +  +  L  
Sbjct: 122 IKSTLPETVRFVADYDQFLYHPDAVSRDFSKIPDVFTIFRKKVEKTVAVEKECTVTKLSE 181

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFC--KEKVYYYVEQRD 235
             +  T    PS     F          FP   GE  AL  L+ +    +KV +Y   R+
Sbjct: 182 RNLIETETAIPSMESLGFSDTKTHAKTAFPFKGGETAALERLQYYFFESKKVSFYKNTRN 241

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            +     +++ SP+L+ G LS +  + ++KE   +         +  + ELIWR++++++
Sbjct: 242 GLVGTDYSTKFSPWLANGSLSAKTIYWKIKEY--EAEFGSNQSTYWVIFELIWRDYFKYI 299

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              Y +       I   +  EWN D   +Q W  G T    ++A M +L   G+M NR R
Sbjct: 300 SLKYNAKVFRIGGILE-KTYEWNTDQKTVQQWINGETKDAFVNANMIELKETGFMSNRGR 358

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
              AS+  KDLL+DWRIG  YF S LLD D+ SN G W + A  GND  P  R FN  +Q
Sbjct: 359 QNVASYFAKDLLLDWRIGAAYFESVLLDYDVHSNYGNWMYVAGVGND--PRDRKFNTKMQ 416

Query: 415 GKRFDPQGTFIRHWL 429
             R+D    + + WL
Sbjct: 417 ADRYDQNHKYRKLWL 431


>gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14]
          Length = 616

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 124/549 (22%), Positives = 204/549 (37%), Gaps = 86/549 (15%)

Query: 11  LVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           L+W R DLR+ DN AL+AA    +SD  +  V+I    +       A +  F+   L  +
Sbjct: 75  LLWFRRDLRLHDNGALHAAIQATDSDTVLFPVYIL--HRPENKKCGAVRFQFLLECLEDI 132

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             SL QK             ++I +L       ++T L + +      ++RD+ +    Q
Sbjct: 133 DTSLRQKQSRLLV----FCGEAISFLTVLMQAWKITDLIFEKFQLPYAIKRDEKIMSMAQ 188

Query: 129 H-RVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              +   +   + L  P  I+  +  Q+   +  F   +            P        
Sbjct: 189 TLHINVTTVSGATLHDPKEIVTLNHNQVPLDFQNFLDIVSDMPQPRLPLLTPSQLPSFES 248

Query: 187 PVTPSNIPRFFD--------------------------------------YPFQAIDPMF 208
            ++   +   F                                       Y   +     
Sbjct: 249 VISVETLCECFQAEYLSQSLLNITEAQLLIDTIIGKAYGLLTIPALDVFGYLTPSQHSFL 308

Query: 209 PIGEQNALHILRKFC--KEKVYYYVEQRDIP---AIQGTSQLSPYLSIGVLSPRQCWNRL 263
             GE  AL  L  FC  +E+V  + + +  P       T+ LSPYL+ G LS R  + R+
Sbjct: 309 YGGESVALERLEVFCSIEERVGCFEKPKTSPVQMNPPSTTALSPYLAFGCLSVRALFYRI 368

Query: 264 KEEFVD-LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN----- 317
               ++   +   S A S   +L+WREF+       P     +   P   KI W      
Sbjct: 369 MFIQLNFSSVSKGSPATSLDGQLMWREFFYCYAHNVPEFASPEQ-NPLCRKIGWRLQNED 427

Query: 318 ---------------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                            S     W +G TGFP IDA MRQ+ T GW H+  R   A FL 
Sbjct: 428 SDPLTTHSSSKEEDLVASEQFTCWARGKTGFPWIDAIMRQILTEGWAHHLARHAVACFLT 487

Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           + DL + W  G + F   L+D D A N G W W +++      +  +F+P+   +++  +
Sbjct: 488 RGDLYISWIHGAKLFQELLIDMDWAINVGNWLWVSASCFF-HDFQNVFSPSTFPQQYYNE 546

Query: 422 ---GTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
                +I+H++PEL N+P +Y+  P              +  +YP PI+DH  A    + 
Sbjct: 547 QEAAIYIKHYIPELQNMPDRYVFEPWRAPLNIQKSVNCLIGKDYPFPILDHHVASKKCIL 606

Query: 473 QYYAAKKQS 481
                 + +
Sbjct: 607 ALKRCSEAA 615


>gi|149375532|ref|ZP_01893302.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
 gi|149360237|gb|EDM48691.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
          Length = 440

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 112/430 (26%), Positives = 186/430 (43%), Gaps = 21/430 (4%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYA 63
           V L W   DLR+ DN AL AA  +    ++ V++  P  +     +   + A +  F++ 
Sbjct: 2   VSLYWFTRDLRLHDNAALLAASKSD--MLLCVYVVDPRWFVPGPFQCRALGAHRWRFLWQ 59

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL+ +++ L   G          F    + +        + ++  +R     E  + K L
Sbjct: 60  SLISLERDLRPLGQRLHI----AFGKPEQVIPDLVHDHNINRVIRSRLPGTREAVQWKSL 115

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ--NLVQADLRSLPVPA 181
             +L   V  + F+   L   GS+      +   ++ FRK + +  N     LR   + A
Sbjct: 116 RDKLPQTV-FQQFETLSLFTEGSLPMDLSHLPDTFSQFRKQVEKTGNRNSERLRIRTLTA 174

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK--FCKEKVYYYVEQRD-IPA 238
           +         N               F  GE   L  L    F   ++ +Y E R+ +  
Sbjct: 175 LPPAPGYPQDNRGECPAIAEPRHPIGFRGGESAGLERLNDYLFVNHRIAHYKETRNALDE 234

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              +S+LSP+L+ G LS R+  + + +     +       +    EL+WRE++      +
Sbjct: 235 ADASSRLSPWLANGALSAREVADTISDYENQHV--KNESTYWLWFELLWREYFYWYALKH 292

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            +    +      +K   +   H  +AW  G T +P+++AAM QL   G++ NR R I A
Sbjct: 293 GASLFHRDG-VQQKKRSTSFYPHRFKAWCAGSTEYPLVNAAMNQLRETGYISNRSRQIVA 351

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  +F  QL+D D+ASN G WQ+ A  G D     R FN   Q ++F
Sbjct: 352 SCLVNELELDWRYGAAWFEEQLVDYDVASNYGNWQYQAGVGADPKG-PRHFNLEKQARQF 410

Query: 419 DPQGTFIRHW 428
           DP G F++ W
Sbjct: 411 DPDGDFVKRW 420


>gi|312211632|emb|CBX91717.1| hypothetical protein [Leptosphaeria maculans]
          Length = 709

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 113/558 (20%), Positives = 191/558 (34%), Gaps = 86/558 (15%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +    + W R DLR+ D+ AL AA       +  ++   P    +  +   +  ++    
Sbjct: 48  SKPRVIYWFRTDLRLHDSPALKAALDLKPDCLYPIWTWDPHYVYRARVGPNRWQYLLDCQ 107

Query: 66  LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
             + KS+++          +    +             ++T L + +  +     RD+ +
Sbjct: 108 KDLSKSITKVNPQSKLFVIR----EAPQTLFPKLFKAWQITHLVFEKDTDAYGRERDEQV 163

Query: 124 EKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD-----LRSL 177
            +  +   V         L  P  ++        +     +A  + + Q        +SL
Sbjct: 164 MELAKTAGVEVVVKTGRTLYDPDELVRQNHGKPTMSINQVQAAGKKIGQIPRPIPAPKSL 223

Query: 178 PVPAI-----------------------------RLTGPVTPSNIPRFFDYPFQAIDPMF 208
           P P                                L GP     +P   +   +      
Sbjct: 224 PGPGKVDFDFHQEKPSNSPDINDAQRNTDEASYSSLAGPNGDFAVPTMKELGLKLATSTH 283

Query: 209 PIGEQNALHILRKFC--KEKVYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRL 263
             GE  AL  L K    +E    + + +  P     Q T+ LSP+L  G LS R+ + R+
Sbjct: 284 RGGETLALEALEKIIANEEYTATFEKPKTAPTAFEPQATTLLSPHLHFGSLSCREFYWRV 343

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN------ 317
           ++       K      S   +L++R+ Y    A            P    I W+      
Sbjct: 344 QDVVDRFKGKASQPPTSLTGQLLFRDMYFGAQAALGYSFSQTYNNPQCRFIPWHLPSKID 403

Query: 318 ------------KDSH---LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                        D+      + WK+G TGFP IDA MRQL   GW+H+  R   A FL 
Sbjct: 404 IKSSMTTGEYLVDDAEAEIHFKRWKEGCTGFPWIDALMRQLKREGWIHHLGRHAVACFLT 463

Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +    +DW  G E F   L+D + A N G WQW  S       +FR ++P    +++D +
Sbjct: 464 RGGCYIDWERGAEVFEEWLIDHEAACNIGNWQW-LSCTAFFAQFFRCYSPIAFPQKWDKE 522

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN-----------------DLSLNYPLPIVDHK 464
           G F++ ++PEL     +YI+ P      +                      YP P+ D  
Sbjct: 523 GEFVKRYVPELAKFDKKYIYEPWKAPIADQKKWGCRIEGDGLSVAKGEGETYPKPMFDFP 582

Query: 465 KACHHTLNQYYAAKKQSL 482
                 L+    A    L
Sbjct: 583 TRRDICLDGMKNAYHVGL 600


>gi|295135590|ref|YP_003586266.1| cryptochrome-like DNA photolyase family protein [Zunongwangia
           profunda SM-A87]
 gi|294983605|gb|ADF54070.1| cryptochrome-like DNA photolyase family protein [Zunongwangia
           profunda SM-A87]
          Length = 429

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 111/438 (25%), Positives = 192/438 (43%), Gaps = 26/438 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61
           MS  L+W  N+LR+ DNKAL+ AC   + +VIAV+   P ++++           ++ F+
Sbjct: 1   MSTGLIWFENNLRVKDNKALFEACEKHE-QVIAVYCFDPRKFKKTKYGFPKTGKFRAKFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+  +Q++L+Q  I              E +       ++  +++  ++   E +   
Sbjct: 60  IESIKNLQENLNQLNISLLI----FLQKPEEIIPEIARNHKIEAIYFQEEWTTEEKQIIA 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L+K+L   +  +SF    L  P  I      ++ KVYT FRK   Q +       +P  
Sbjct: 116 ALKKKLP-TIDFQSFYTQFLFHPEDIAYGDFNEIPKVYTEFRKKCEQYVDVRKEIEIPKQ 174

Query: 181 AIRLTGPVTPSNIPRFFDYPFQA------IDPMFPIGEQNALHILRKFCKE--KVYYYVE 232
                     S  P   +   +           F  GE  A   +  +  +  K+  Y +
Sbjct: 175 KPESNRIKNTSKTPNLKELGLEDYQQDSRTAFSFKGGEDEAWKRIDYYFWKTTKLSEYKQ 234

Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ +     +S+LS +L+ G +S    ++++K+   +  I      +  + ELIWR+F+
Sbjct: 235 TRNGLLGKDYSSKLSAWLANGSISAVSIFHQVKKFEHE--ITKNQDTYWLIFELIWRDFF 292

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           ++    + +       I   +K++W      LQ W  G T    ++A + ++   G+M N
Sbjct: 293 KYTSLKHGNSIFKLSGI-LDKKLDWKFSIESLQQWINGETKEDFVNANINEIAATGFMSN 351

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R    SF  K+L  DWR G  YF S L+D D+ SN G W + +  GND  P  R FN 
Sbjct: 352 RGRQNVNSFWAKELKQDWRAGAAYFESVLVDYDVHSNWGNWMYNSGVGND--PRDRKFNI 409

Query: 412 TIQGKRFDPQGTFIRHWL 429
             Q   +DP   ++  WL
Sbjct: 410 KKQADLYDPDNQYVDTWL 427


>gi|55978285|ref|YP_145341.1| DNA photolyase [Thermus thermophilus HB8]
 gi|47606704|sp|P61497|PHR_THET8 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|17942830|pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus
           Thermophilus
 gi|21465636|pdb|1IQU|A Chain A, Crystal Structure Of Photolyase-Thymine Complex
 gi|146386554|pdb|2J07|A Chain A, Thermus Dna Photolyase With 8-Hdf Antenna Chromophore
 gi|146386555|pdb|2J08|A Chain A, Thermus Dna Photolyase With 8-Iod-Riboflavin Antenna
           Chromophore
 gi|146386556|pdb|2J09|A Chain A, Thermus Dna Photolyase With Fmn Antenna Chromophore
 gi|15080709|dbj|BAB61864.2| DNA photolyase [Thermus thermophilus]
 gi|55773458|dbj|BAD71898.1| DNA photolyase [Thermus thermophilus HB8]
          Length = 420

 Score =  277 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 133/425 (31%), Positives = 198/425 (46%), Gaps = 35/425 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   LVW R DLR+ D+ AL  A       V+ + +  P   +      R+  +   ++ 
Sbjct: 1   MGPLLVWHRGDLRLHDHPALLEALARG--PVVGLVVLDPNNLKTT---PRRRAWFLENVR 55

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++++   +G      +   ++   E         +   ++    +      RD  + + 
Sbjct: 56  ALREAYRARGGALWVLEGLPWEKVPEAARRL----KAKAVYALTSHTPYGRYRDGRVREA 111

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L            +L  P  +     + Y+VYTPF       L +     LP P     G
Sbjct: 112 LP-------VPLHLLPAPHLLPPDLPRAYRVYTPF-----SRLYRGAAPPLPPPEALPKG 159

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           P            P          GE+ AL  LR F + K+  Y E+RD    +G S+LS
Sbjct: 160 PEEGEIPREDPGLPLPE------PGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLS 213

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PY ++GVLSPR      +        +   GA  W+ EL+WR+F  HL+  +P +   +P
Sbjct: 214 PYFALGVLSPRLAAWEAER-------RGGEGARKWVAELLWRDFSYHLLYHFPWMAE-RP 265

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
             P  +   W +D  L QAW +G TG P++DAAMR+L+  G++ NR RM  A F VK LL
Sbjct: 266 LDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLL 325

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + W+  EE F   LLDGD A N  GWQWA   G D+ PYFR+FNP +QG+R DP+G +++
Sbjct: 326 LPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLK 385

Query: 427 HWLPE 431
            W PE
Sbjct: 386 RWAPE 390


>gi|227548195|ref|ZP_03978244.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079756|gb|EEI17719.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 440

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 133/495 (26%), Positives = 208/495 (42%), Gaps = 83/495 (16%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  +VW R+DLR+ DN AL  A       V+ +++    +    GI    + ++  SL  
Sbjct: 3   TPTIVWFRDDLRLADNAALTWATERG--PVVGLYV---HETVGRGIGRAAAWWLRHSLDA 57

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++SL    I           D  E +     +     + +NR+Y  +    D  +++  
Sbjct: 58  LRESLPAPLIEL-------AGDPREIVPRLARELGA-AVTWNRRY--HLTDIDAEVKEAT 107

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                  S    +L  P  +       Y+V+TPF  A    L+ A    LPVP I     
Sbjct: 108 G----AVSHPGYLLTEPWDVR---ATPYRVFTPFFNAARSVLLDAPPTPLPVPHITPADI 160

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-TSQLS 246
              +           ++      GE  A   L++F       Y       A+ G TS LS
Sbjct: 161 GPATVYAPAEPAWAASLAQHNTPGEGAAREQLKRFIA-ASADYDNN----ALDGVTSGLS 215

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G +SP + W    +           GA+++  +L+WR+F  H     P +   K 
Sbjct: 216 PHLRFGEISPAEVWLAAVDA----------GAWAFARQLLWRDFAWHRYYHVPDMAT-KN 264

Query: 307 FIPWTEKIEWNKDS-----------------------HLLQAWKQGYTGFPIIDAAMRQL 343
                ++ +W                             L AW+ G TG P++DA MR+L
Sbjct: 265 VRRKFDRFDWEWTPNAVPGSTDAAFAHAEMDPGAQHMKELAAWQSGRTGIPLVDAGMREL 324

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              G MHNR+RM++ S+L K+L + WR GEE+F   L+D D ASN   WQW A +G+D+ 
Sbjct: 325 WATGRMHNRVRMVSGSWLTKNLGIHWRHGEEWFWDTLVDADAASNAFNWQWVAGSGDDAA 384

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDH 463
           PYFRIFNP  Q ++FDP G+++  WLP+                     + +Y  P+ D 
Sbjct: 385 PYFRIFNPLTQAEKFDPHGSYVARWLPD---------------------TADYSEPMADV 423

Query: 464 KKACHHTLNQYYAAK 478
           K++    L  Y   K
Sbjct: 424 KQSRLRALVAYDDIK 438


>gi|309779655|ref|ZP_07674414.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp.
           5_7_47FAA]
 gi|308921596|gb|EFP67234.1| deoxyribodipyrimidine photolyase family protein [Ralstonia sp.
           5_7_47FAA]
          Length = 516

 Score =  276 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 98/491 (19%), Positives = 178/491 (36%), Gaps = 32/491 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +VW + DLR+ D+  L  A      KV+ +++  P  W Q   +++   FI   L 
Sbjct: 1   MSYTIVWFKRDLRVHDHAPLVHAARRG--KVLCLYVIEPSLWAQPDAASQHYLFIQECLH 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125
            + + L   G   Q        +  E           + L  + +    +   RDK + +
Sbjct: 59  DLAEQLRACGARLQV----AVGEVTEVFGRLHAAAAFSHLVSHEETGNGHTFARDKAVAR 114

Query: 126 R-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             L H V  + +    ++    +    +   +         +       L  + +P   +
Sbjct: 115 WCLDHDVTWREWPQHGVVR--RLPTRDVWHDRWAEHMYAPCMPAPGVGALSDVMLPWPAM 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
             P   +        P +         E     +LR F  E+   Y      P  A    
Sbjct: 173 DWPGCEALGLDTHAPPRRQRGGRARGSE-----VLRDFLFERSRNYRGGISSPLTAPSAC 227

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS-------WLNELIWREFYRHLM 295
           S+LSPYL+ G L  R+     ++  + L       A         +++ L W   +   +
Sbjct: 228 SRLSPYLAYGCLGMREVVQATEQRVLQLRASTDEDAVWQRKGLAAFVSRLHWHCHFIQKL 287

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P++        +    E   ++    A   G TG+P++DA +  L   GW++ R+R 
Sbjct: 288 ESEPAIEFRNLHRGYDGLRESAWNADHFAALVAGRTGWPMVDACVAMLRETGWINFRMRA 347

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +  S     L + WR    +   Q +D +   +    Q     G   +   R++NP  Q 
Sbjct: 348 MLVSVASYPLWLHWRPVGVWLARQFVDYEPGIHWS--QMQMQAGTTGINTTRVYNPIKQA 405

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHH 469
           +  DP G F+R WLP L  VP  ++  P              +  + P+P+VD + A   
Sbjct: 406 QDQDPHGRFVRRWLPALRRVPDAWLLQPWRMPPDVQARCGVRVGEDIPVPLVDLEAATRQ 465

Query: 470 TLNQYYAAKKQ 480
              + +A + +
Sbjct: 466 AKMRVHALRAR 476


>gi|313212920|emb|CBY36823.1| unnamed protein product [Oikopleura dioica]
          Length = 476

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 112/451 (24%), Positives = 189/451 (41%), Gaps = 26/451 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQHGISARQSHFIYASLLQV 68
            + W R  LR+ DN+ALY A   S   V  ++I     Q  +   SA ++ F+   L  +
Sbjct: 7   TVHWFRKGLRLHDNEALYHAVTTSQV-VFPIYILDVDWQTEKEKFSALKTRFLIECLRDL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L + G            D+   +  +C +  +T++ + +  EI    RD+ + K + 
Sbjct: 66  DEGLKKYGTRLYVLTG----DATTVIKKFCKENEITQMTWMKDAEIFYRERDEEITKVVH 121

Query: 129 H-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +  KSF    L     ++        +      A I ++ Q       V A      
Sbjct: 122 RMEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTVTAKHFKLG 181

Query: 188 VTPSNIPRFFDYPFQAID-------PMFPIGEQNALHILRKFCKEKVYYYVEQRD---IP 237
                I +     F           P++  GE+ AL +L+    +   + +   +     
Sbjct: 182 SKKIIIFKKSILAFGVWGHQAPRSLPIYRGGERQALKVLQAKINDPTLFTLNGFNQGVKT 241

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  T+ LS Y + G +S R  W   ++        P+S       ++++REF+  + A 
Sbjct: 242 KLPHTTYLSAYQNYGCISTRHFWKAAEKL-------PESKTIMLRGQIMYREFFY-VAAS 293

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
             +            +IEW K+   L AW++G TG+P IDA MRQL T G++H+  R   
Sbjct: 294 QVNNFTKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDAVMRQLVTEGFIHHLNRWAV 353

Query: 358 ASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           ASFL    L ++W  G+E F    +DGD A N G W W   +        +  +P    +
Sbjct: 354 ASFLTNGQLWLNWEHGQEMFEEHQIDGDYAMNAGCWMWCTGSAFMDSISEKTLDPVKFAR 413

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           R+DP+G F R + PEL N+P +Y+ +P    
Sbjct: 414 RWDPEGHFTRKYCPELKNMPLKYLFSPWEAP 444


>gi|298708262|emb|CBJ48325.1| cryptochrome 2 [Ectocarpus siliculosus]
          Length = 571

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 125/494 (25%), Positives = 206/494 (41%), Gaps = 48/494 (9%)

Query: 11  LVWLR-NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYAS 64
           +VW + +DLR+ D++ L  A   S A+V  VF      + Q       +SA +  F+  S
Sbjct: 26  IVWFKYSDLRLEDHEPLALAHRES-AQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLES 84

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT-KLFYNRQYEINEVRRDKLL 123
           +  ++  L ++G      +    D                  LF +      E      +
Sbjct: 85  VADLRARLRERGSDLLVRRGHPEDVIPALAARLGGGSVAGVTLFAHTDVCSEEADVHAAV 144

Query: 124 EKRLQHRVIC----------KSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQA 172
           +  L                K    + L     +       + +++T FRK++       
Sbjct: 145 KSALAAASSAGRGGGAAVAVKEAWGNTLHDVADLPFDFPSGVPEIFTQFRKSVESKYSCK 204

Query: 173 DLRSLPVPAI---------------RLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNA 215
               +P+P+                   G +  +        P +    +FP   GE   
Sbjct: 205 MRPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGTAPERDARSVFPFNGGETAG 264

Query: 216 LHILRKFC--KEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
           L  ++ +   ++++  Y   R+     G +S+ SP+L++G LSPR     +++   D + 
Sbjct: 265 LRRVQSYIWDEDRLREYKVTRNGLLGSGFSSKFSPWLALGCLSPRTIVKEIRKYETDRI- 323

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF-IPWTEKIEWNKDSHLLQAWKQGYT 331
                 +  + EL+WR+F+R+      +           T +  W  D+  L+AWK+G T
Sbjct: 324 -ANDSTYWLIFELLWRDFFRYSAVKNGNSIFHLGGPRRDTGRQRWLDDAGSLEAWKEGET 382

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G+P+IDA MR+L   G+M NR R + ASF  +DL +DWR+G E+F   LLD D ASN G 
Sbjct: 383 GYPLIDANMRELKASGFMSNRGRQVVASFFTRDLQMDWRLGAEHFEEYLLDHDPASNWGN 442

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL---- 447
           W + A  G+D     R FN   Q K +D +G ++RHWLPEL  +PT  +  P        
Sbjct: 443 WNYVAGVGSDPRE-GRYFNIEKQAKTYDAEGAYMRHWLPELAALPTTALQTPGGITTMLR 501

Query: 448 -DKNDLSLNYPLPI 460
                 +  YP PI
Sbjct: 502 HMHAIPTSVYPDPI 515


>gi|298694022|gb|ADI97244.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 457

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 137/481 (28%), Positives = 217/481 (45%), Gaps = 35/481 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R   N          D      FI   E       S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLL 123
           +  +SL          + + +  S + + S+C +  ++++        Y + E       
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVVAGDIMSYHLEEYDILHQR 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +  Q  +       +        +N   + YKV+T F K     L   D+    +  + 
Sbjct: 111 SQFDQAEITVTLVRGNHYFKASKTMNKQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELI 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI--LRKFCKEKVYYYVEQRDIPAIQG 241
                 P+N+           D     G   A      ++F +  +  Y   R+      
Sbjct: 171 DIVIAAPNNLK----------DVQIDAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEIL 220

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLS  L+ G+L   + +N L   + +     +S   +++ ELI+REFY  LM  YP  
Sbjct: 221 TSQLSIALAYGLLDIIEIFNDLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPES 276

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              + F P    I W+++    +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL
Sbjct: 277 A-HQSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFL 335

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL ++W  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+
Sbjct: 336 TKDLFINWTWGEDFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPK 395

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
             +I+ +LP LN +  +Y+H  H    +      +L  +YP  IVDH++     L  + A
Sbjct: 396 ALYIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455

Query: 477 A 477
            
Sbjct: 456 L 456


>gi|254369039|ref|ZP_04985052.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121960|gb|EDO66130.1| hypothetical protein FTAG_00881 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 457

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 108/439 (24%), Positives = 186/439 (42%), Gaps = 29/439 (6%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +S RQ  F+   L ++   L++ G            D++E  +    +  +  ++ +++ 
Sbjct: 1   MSHRQYLFLSECLEELNTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQET 56

Query: 113 EINEV-RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
             +   +RD  LEK  +   I              ++            + + + + +++
Sbjct: 57  WNDWTYQRDIKLEKFFKQNNIVWHQPYQ-----NGVVRCLADRDNWALLWHQRMSEKIIR 111

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
           A  +   +   ++  P   S      D  +         G   AL IL  F  ++   Y 
Sbjct: 112 APTKLKFICENQIKIPTAES-----LDLEYDDCYKRQKGGRIRALRILDSFLYQRGCGYT 166

Query: 232 EQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNR-------LKEEFVDLLIKPKSGAFSWL 282
           ++   P  A +  S+LSPY++ GV+S ++ + +       +KE  V    K  S   S+L
Sbjct: 167 KEMSSPVTAFKSCSRLSPYIAFGVISLKEIYQKANQRKNEIKESSVKNKTKWLSAMRSFL 226

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
           + L W   +   +   PS+        + +      +    +AWK G TG+P+IDA MR 
Sbjct: 227 SRLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTEPLNQQCFEAWKTGNTGYPMIDACMRA 286

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   GW++ R+R +  SF    L +DWR+   Y      D +   +    Q    +G   
Sbjct: 287 LIATGWLNFRMRAMLMSFASYHLWLDWRVTSLYLAVLFTDYEPGIHYSQVQMQ--SGTTG 344

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVD 462
           +   RI+NP  Q     P G FIR WLPEL NV  + IH P  WL+K++ SL+YP P +D
Sbjct: 345 INSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNENIHTP--WLEKHN-SLDYPDPTID 401

Query: 463 HKKACHHTLNQYYAAKKQS 481
            K+A     +  Y  +K S
Sbjct: 402 EKQARKFAADNIYKIRKSS 420


>gi|189188250|ref|XP_001930464.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972070|gb|EDU39569.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 655

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 112/558 (20%), Positives = 188/558 (33%), Gaps = 86/558 (15%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           +    + W R DLR+ D+ AL AA   + A +  ++   P    +  +   +  ++    
Sbjct: 2   SKPRVIYWFRTDLRLHDSPALKAALDLNPACLYPIWTWDPHYVYRARVGPNRWQYLLDCQ 61

Query: 66  LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD-KL 122
             + KS+++          +    +             ++T + + +  +     RD K+
Sbjct: 62  DDLSKSITKLNPKSKLFVIR----EAPQTLFPKLFKAWKITHMVFEKDTDAYARERDDKV 117

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQ------------------------MYKVY 158
           LE   +  V         L  P  ++                               K +
Sbjct: 118 LEIARKSGVEVVVKTGRTLYDPDELVKQNHGKPTMSITQVQAAGKKIGRIPRPIPAPKSF 177

Query: 159 TPFRKALIQNLVQADLRSLPVPAIR----------LTGPVTPSNIPRFFDYPFQAIDPMF 208
                  ++   +       V AI+          L GP     +P   +   +      
Sbjct: 178 PNPGDTDLKFDQERPESQPDVNAIQRDGDEASYTALAGPNGDFAVPTMEELGLKPATTAH 237

Query: 209 PIGEQNALHILRKFC--KEKVYYYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRL 263
             GE  AL  L +    +E    + + +  P     Q T+ LSP++  G LS R  + R 
Sbjct: 238 RGGETEALRALDEIIANEEYTATFEKPKTAPTAFEPQSTTLLSPHMHFGSLSCRLFYWRA 297

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN------ 317
           ++       K      S   +L++R+ Y    A            P    I W+      
Sbjct: 298 QDVVDKFKGKASQPPVSLTGQLLFRDMYFGAQAALGYSFGQTYNNPNCRFIPWHLPSKID 357

Query: 318 ---------------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                          +     Q WK G TGFP IDA MRQL   GW+H+  R   A FL 
Sbjct: 358 TKSGLITGEYMVDNAEAEAHFQRWKHGQTGFPWIDALMRQLAQEGWIHHLGRHAVACFLT 417

Query: 363 K-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           +    +DW  G E F   L+D + A N G WQW  S       ++R ++P    +++D +
Sbjct: 418 RGGCYIDWERGAEVFEEWLIDHEAACNIGNWQW-LSCTAFFAQFYRCYSPIAFPQKWDKE 476

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSW-----------------LDKNDLSLNYPLPIVDHK 464
           G  +R ++PEL     +YI+ PH                            YP P+ D  
Sbjct: 477 GKLVRKYVPELAKFDKKYIYEPHKAPIVDQKKWGCLIKGDGSAAAEGSMKTYPKPMFDFA 536

Query: 465 KACHHTLNQYYAAKKQSL 482
           +     L     A   +L
Sbjct: 537 ERRDICLAGMKNAYHVNL 554


>gi|239994034|ref|ZP_04714558.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii
           ATCC 27126]
          Length = 543

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 114/513 (22%), Positives = 202/513 (39%), Gaps = 42/513 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  SV ++W + DLR+ D++ LY A   ++  ++ +F   P       +  R   FI  S
Sbjct: 6   SKQSVTVIWFKRDLRLRDHEPLYRAVEKNE-NILPLFCWEPSLIADPHMDMRHWQFIQQS 64

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK-------LFYNRQYEI--- 114
           +  +   L   G       C    D++E +  +     V         + +NR   +   
Sbjct: 65  IDDINAQLPS-GARLLTLHCEVI-DALELIAQHYAISTVRSYQEIGLSVTHNRDISVSNY 122

Query: 115 -------NEVRRDKLLEKRLQHRVICKSFDDSVLLPP--GSILNHALQMYKVYTPFRKAL 165
                  +   +   + + L HR   +   D           +N    +           
Sbjct: 123 LKKKKINHIESQYGAVMRGLPHREQWQQNWDRHFTTKTYDIDINSVNWVDWTQHNNINTA 182

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP-FQAIDPMFPIGEQNALHILRKFCK 224
            +NL +  L    + +   T     SN  R       + ++ M P GE+ A  +L+ F  
Sbjct: 183 CKNLDELGLFDCHITSQTGTHFSEKSNYYRQDVLDKLKKLNKMQPGGERRAWQVLKDFFD 242

Query: 225 EKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW- 281
            +  YY +    P  A +  S+LSPYL+ G LS +Q +  ++ +     + P S    W 
Sbjct: 243 ARGQYYHQHISKPEYARRACSRLSPYLAWGNLSIKQVYQSVQHQKQTKKLLPNSDRKQWS 302

Query: 282 ------LNELIWREFYRHLMAFYPSVCM--GKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
                  + L W   +        S+              I+  +       W  G TG+
Sbjct: 303 RALAALTSRLHWHCHFIQKFESEHSIEWRPMNSGYENFPFIDGPEAERRFYLWTMGLTGY 362

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           P++DA MR L   G+++ R+R +  SFL   L V W     Y  +Q LD +   +    Q
Sbjct: 363 PLVDACMRALKYTGYLNFRMRAMVTSFLCHHLNVHWLKAAHYLATQFLDFEPGIHYPQIQ 422

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH------SWL 447
             AS     +   R++NP  Q  + DP+G FI+ W+PEL  +P++ +HAPH      + +
Sbjct: 423 MQASVT--GIHTVRLYNPATQSSKLDPEGVFIKKWVPELAKLPSEAVHAPHLLPPLEAQM 480

Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
              D+  +Y  P+VD  +    T  + +  +++
Sbjct: 481 LDFDVERDYVEPLVDITENNRITAKRLWDYRER 513


>gi|239994035|ref|ZP_04714559.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
          Length = 435

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 104/429 (24%), Positives = 181/429 (42%), Gaps = 19/429 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIYAS 64
            L W R+DLR+ DN A+ A C     +V  ++I       P  +    +   +  F+  +
Sbjct: 17  GLYWFRHDLRLHDNAAISALCEAVQ-QVTFLYILDDKAFTPTTYGFAPMGKHRHTFLLQT 75

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L+ +++ L++ G      +     D  E L       + + L  +     +E  +   ++
Sbjct: 76  LVDLKRQLAKLGHDLLIVKG----DPAECLVQLMKSGQYSHLGVSEHCGFDERAQLNAVK 131

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +     V         L    ++  +  +M  V++PFR+ + ++     +          
Sbjct: 132 RFFDS-VTVIETPTFGLFDAQTLPFNIEEMPDVFSPFRRKVEKHCKPLSVHPPMDSLPSP 190

Query: 185 TGPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD-IPAIQ 240
             P    +     D    +     F  GE  AL  L  +  +      Y + R+ +   Q
Sbjct: 191 FTPQLDESFLFAIDTDLPSPSQSSFVGGETAALTHLNTYLFDWKAAATYKDTRNALDTWQ 250

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +++LS +L+ G LS R+   ++++   +  ++     +    EL+WREF+  L   Y +
Sbjct: 251 DSTKLSAWLANGSLSAREVIRQVQQ--FEATVEKNDSTYWIYFELLWREFFHWLQCKYGA 308

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  I   +K            W +G TG+PI+DA MRQL   G+M NR R + AS 
Sbjct: 309 NWFRFGGI-QGKKPSTQHCPETFALWCEGKTGYPIVDACMRQLAETGYMSNRGRQLVASC 367

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            V +L  DWR G  +F  QL+D D+ SN G W + A  G+D   + R FN   Q + +D 
Sbjct: 368 FVHELRQDWRYGAAWFEHQLIDYDVGSNWGNWLYLAGVGSDPRGH-RQFNLQKQTEIYDS 426

Query: 421 QGTFIRHWL 429
            G F + WL
Sbjct: 427 DGQFCKKWL 435


>gi|55378668|ref|YP_136518.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
           43049]
 gi|55231393|gb|AAV46812.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
           43049]
          Length = 534

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 115/479 (24%), Positives = 183/479 (38%), Gaps = 37/479 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQV 68
            +VW R  LRI D  A+  A  +    V+ +F+  P  +   G++   +  F++  L  +
Sbjct: 28  TVVWHREHLRIRDQGAVARAAAS--EYVLPLFVFDPAFYGADGLACDSRIRFLHDCLADL 85

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
                               D ++ L  +  +     +            RD+ + ++  
Sbjct: 86  SDQYHTATG---CGLTYAHGDPVDVLGRF-REAGWDIVTMAAPTGRYGRERDRRVREQCD 141

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                 +F D      G + + A                +    D  ++   +      +
Sbjct: 142 -----VTFVDGD----GLVRDRAATRDGWQDDVSAWFAADQHDWDPSTVTSRSFDSGIDI 192

Query: 189 TPSNIPRFFDYPFQAIDPMFPIGEQN-ALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
           +         Y         P G    A   L  F  E++  Y      P  A  GTS L
Sbjct: 193 STIEDH----YDIAPSKSDVPRGGTGPARERLSAF-AERIDDYPGNISAPVDARDGTSGL 247

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL+ G LS RQ    + E   D       G   +++ L W + Y   +  +P      
Sbjct: 248 SPYLAFGCLSVRQVIQYIDEHAPDGR-----GKEMFVSRLFWNKHYEQKLEDWPGWLETA 302

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                        D  L+ AWK G TGFP++DA+MR L   GW++ R+R ++AS     L
Sbjct: 303 VNPVLEGFNAEQYDPDLVAAWKHGQTGFPMVDASMRCLRQTGWLNFRMRSMSASVYYHLL 362

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
              WRIG ++F   L+D   A N    QW +  G    P  R++NP  Q +  DP G FI
Sbjct: 363 QQPWRIGADWFYHHLIDASAAINYT--QWQSQCGLVGKPALRLYNPRKQVRDQDPDGEFI 420

Query: 426 RHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           R W+PEL ++P +Y+  P             D+  +YP P+VD+  A      +Y A +
Sbjct: 421 RQWVPELESLPDEYLDRPEQTPVHVQASCGVDIGDDYPHPVVDYDAARQAFHRRYEAVR 479


>gi|225024820|ref|ZP_03714012.1| hypothetical protein EIKCOROL_01707 [Eikenella corrodens ATCC
           23834]
 gi|224942423|gb|EEG23632.1| hypothetical protein EIKCOROL_01707 [Eikenella corrodens ATCC
           23834]
          Length = 438

 Score =  276 bits (705), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 135/464 (29%), Positives = 201/464 (43%), Gaps = 32/464 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           ++   LVW R DLR  D  AL AA   S   ++ +++       +  ++AR+ +FI+ SL
Sbjct: 2   SVPTTLVWFRQDLRTDDQPALQAAAR-SGRPLLGLYVW----PNEGMLTARRRYFIWQSL 56

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +Q  L++ GI     + +     +E         R  ++            R  +LEK
Sbjct: 57  RDLQARLAECGIPLHVREGNPVQAVVET----AAHCRAAEVVCASDGAGQGALR-AVLEK 111

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----ADLRSLPVPA 181
                    S  D +L PP   +         +  F+ A     V+        + P P 
Sbjct: 112 ---QGCRLHSVADGLLQPPFQFIRAPYFNEPAFAAFQVAWQAACVEQYAAWQASAWPPPD 168

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +       P N+               P GE  A   L +F   ++ YY   R +PA  G
Sbjct: 169 LAAQQQRLPENLKTAGLPVVPRAVLTIPGGETAARRQLAEFLP-RLPYYPVLRSLPAQHG 227

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           +SQLSP+L  G LS R+ W                 A +W   L  REF+RH    YP V
Sbjct: 228 SSQLSPHLVFGTLSVRRAWAAA---------SNTPDAAAWQEALARREFWRHYFRQYPDV 278

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +P         +  LL AW+QG TG+P+ DAAMR L   GW+ + LR   A+F 
Sbjct: 279 LRQD--LPEHRA-AGQANQTLLAAWQQGITGYPLADAAMRLLRDTGWLPHSLRRFCAAFF 335

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            + L   W+ G  +F  QLLD + A+N+G WQ AA  G   V   + FNP +  ++ DP 
Sbjct: 336 CRVLGGRWQDGAGWFARQLLDFEPAANSGNWQLAAGLGGKQVER-QPFNPVVWSQKLDPD 394

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKK 465
           G FIR  LP+L ++ ++ IHAP         +  YP P+VD++ 
Sbjct: 395 GQFIRRHLPQLAHLDSRRIHAPW-LAAAEVNTNGYPAPVVDYRA 437


>gi|150026082|ref|YP_001296908.1| deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772623|emb|CAL44106.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
           psychrophilum JIP02/86]
          Length = 430

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 186/437 (42%), Gaps = 25/437 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIY 62
              +VW + DLR+ DN+ +  A   S+ ++I V+      +           + ++ F+ 
Sbjct: 3   KTAIVWFKTDLRVEDNETIIKAILQSE-QIIPVYCFDDSHFETTKYGFKKTGSFRAQFLL 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + K+L   G      +     +    +     + +  K+F  R+    E + +K+
Sbjct: 62  ESLQDLDKNLRAIGSGLVITKGKPEIE----IPKIAKEYKAQKVFSKREVSFEEKKTEKM 117

Query: 123 LE-KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           ++ +  + R   ++F  S L     +      +  V+T FRK   Q+     +   P   
Sbjct: 118 VQNELFKLRCELETFSTSTLYHAEDLPFSIRNIPDVFTNFRKKTEQDATIRTVFKKPEK- 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQ------AIDPMFPIGEQNALHILRK--FCKEKVYYYVEQ 233
              +  +T  ++P   D   +           F  GE  A++ L    F    +  Y + 
Sbjct: 177 -INSPKITTLSLPTLEDLGLECKTIDSRAAIQFKGGETEAINRLNHYFFQTNSISNYKKT 235

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +S+ SP+L++G +SPR  +N +K+   +L       ++  + EL+WR+F+R
Sbjct: 236 RNGMVGENYSSKFSPWLALGCISPRFIYNEIKKY--ELQFGANDSSYWLIFELLWRDFFR 293

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +   Y +       I   +    + +  L   W  G T    I+A M +L   G+M NR
Sbjct: 294 FMFKKYQTKFFIYLGIKTEKGNSKSLNDKLFSQWINGKTKSDFINANMLELKLTGFMSNR 353

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   AS+   +L +DWR+G  YF  QL+D D+ SN G W + A  GND   + R FN  
Sbjct: 354 GRQNVASYFCNELNMDWRLGAAYFEEQLIDYDVCSNWGNWAYLAGVGNDPRGH-RYFNIE 412

Query: 413 IQGKRFDPQGTFIRHWL 429
            Q   +D    F   WL
Sbjct: 413 KQASDYDKNKEFRELWL 429


>gi|332520700|ref|ZP_08397162.1| cryptochrome, DASH family [Lacinutrix algicola 5H-3-7-4]
 gi|332044053|gb|EGI80248.1| cryptochrome, DASH family [Lacinutrix algicola 5H-3-7-4]
          Length = 437

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 117/436 (26%), Positives = 193/436 (44%), Gaps = 24/436 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIY 62
              LVW +NDLRI DN  L  A + S+  VIA++      +++           ++ F+ 
Sbjct: 7   KTSLVWFKNDLRINDNATLLNAVNESET-VIAIYCFDNRYFKKDKFGFKKTEKFRARFLI 65

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            ++  ++  L    I    + C   ++SIE   +         L+  +++   E     L
Sbjct: 66  ETITDLKFQLQALNIPLFVY-CDYTENSIE---NLQNTHGFDALYLQKEWTTEENNILDL 121

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           ++K+L   V      +  L  P  +  +   +  V+T FRK L +N++   L     PA 
Sbjct: 122 VKKKLNPNVKIHEEYNQFLFHPEDLNFNIESLPSVFTEFRKNLEKNILVRTLLPTANPAN 181

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILR-KFCKEKVYY-YVEQR 234
                   + +P   D  F            F  GE  A   L   F +EK    Y + R
Sbjct: 182 SSYTFKNETRVPTLKDLGFSDFKIHNQSAFPFKGGETEAFKRLENYFFQEKKLGFYKKTR 241

Query: 235 D-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + +     +S+LS +L+ G +S +  + ++KE   + L       +  + ELIWR+++++
Sbjct: 242 NGLIGTDYSSKLSAWLANGSISAKTIYWKVKE--FETLHFKNQSTYWLIFELIWRDYFKY 299

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +     +       I   +  +W  +   +  W    T  P I+A M +LN  GWM NR 
Sbjct: 300 VSKKNNNKIFKIGGI-LDKTYQWKDNKDAVNKWINSETNEPFINANMNELNKTGWMSNRG 358

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R   AS+  K+LL+DWRIG  YF S L+D D+ SN G W + +  GND  P  R FN  +
Sbjct: 359 RQNVASYFAKELLLDWRIGAAYFESLLIDYDVHSNYGNWMYVSGVGND--PRNRKFNIKL 416

Query: 414 QGKRFDPQGTFIRHWL 429
           Q +R+D  G +   WL
Sbjct: 417 QAERYDANGKYQSMWL 432


>gi|255081582|ref|XP_002508013.1| predicted protein [Micromonas sp. RCC299]
 gi|226523289|gb|ACO69271.1| predicted protein [Micromonas sp. RCC299]
          Length = 450

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 119/466 (25%), Positives = 199/466 (42%), Gaps = 31/466 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +VW R DLR+ DN AL+AA       V+A F+  P++     +     ++++ +L  +Q 
Sbjct: 1   VVWFRQDLRVRDNPALHAAARTG-RPVVACFVWCPKEEGGWPMGGATRYWLHHALGSLQA 59

Query: 71  SLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           SL  +  G        S+   S + L +   +     ++ NR YE  ++ RD+  E++  
Sbjct: 60  SLRARNAGGTSSPSSSSSSSSSFDELAAVVRECGAKDVYCNRVYEPWKIARDRECERKFS 119

Query: 129 H--RVICKSFDDSVLLPPGSILNHALQMYKVYT-----PFRKALIQNLVQADLRSLPVPA 181
               V  +SF+  VL  P      A       +      F       L +      P P 
Sbjct: 120 AELNVRFRSFNAGVLYEPWDARPDATDDACWNSGYGSVRFFLRGCARLGEPPPPLPPPPT 179

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +R+  P        + ++     +P    G+ N                  +R    ++ 
Sbjct: 180 MRVRLPADK-RARSYTEHGGVQSNPG--NGQSNGQS--------NAPKASTERFRADVRT 228

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           T+++SPY+  G LS R+ ++  K   V         A  +L  L WR+     +  +P +
Sbjct: 229 TARISPYVRHGELSVREVYHSAKAIQVGSRKSRARSAAVFLRRLAWRDLAYWSLWRFPRL 288

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           C  +P  P     +W        AW+ G TG+P++DA MR+L   G++ N +R + A FL
Sbjct: 289 C-DEPLRPQY-ATQWWALPWDPVAWQFGQTGYPLVDAGMRELWATGYVPNYVRHVVAGFL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           ++ L VDWR G+ +F   L+D D+A     WQ    +G D   +  + +P    K  DP 
Sbjct: 347 IEYLNVDWRHGQLWFHDTLVDADVAIQGFMWQNGGHSGMDQWNF--VMHPVYAAKSADPD 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV 461
           G ++R W PEL+ +P +Y+H P              L  +YP  IV
Sbjct: 405 GEYVRRWCPELSGLPREYVHCPWEAPATTLAAANVALGRHYPKRIV 450


>gi|302745164|gb|ADL62685.1| cryptochrome 5 [Phreatichthys andruzzii]
          Length = 411

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/411 (23%), Positives = 155/411 (37%), Gaps = 25/411 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL AA  +    +  +F+  P       I   +  F+  +L  + 
Sbjct: 5   SIHWFRKGLRLHDNPALLAALKDC-RHIYPLFLLDPWYPNNTHIGINRWRFLIEALKDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            SL +                 E L     + ++T+L +    E     RDK + K  + 
Sbjct: 64  SSLKKLNSRLFVVSGPP----AEVLPKLFEKWKITRLTFEVDTEPYSQSRDKEVMKLAEE 119

Query: 130 RVICKSFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVP------- 180
             +         L     I+  +  +    Y  F   +            P         
Sbjct: 120 NGVEVIPKISHTLYNIDRIIEENNGKPPMTYVRFLSVVNAIGSPKKPVPAPTKEDMKGVS 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVY--YYVEQRD 235
                       IP   D           +FP GEQ AL  L +  +   +   + + + 
Sbjct: 180 TPFFEDHEEEFRIPTLEDLGLDTSSLGPNLFPGGEQEALRRLDEHMERTTWVCKFEKPQT 239

Query: 236 IPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            P   I  T+ LSPY+  G LS R  W RL + +     +      S   +L+WREF+  
Sbjct: 240 SPNSIIPSTTVLSPYIRFGCLSARTFWWRLADVYRGK--QHSEPPVSLHGQLLWREFFYT 297

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+    +       +++W+ +   L AW++  TGFP IDA M QL   GW+H+  
Sbjct: 298 TAVGIPNFNRMEGNR-HCVQVDWDNNPEHLAAWREARTGFPFIDAIMTQLCQEGWIHHLA 356

Query: 354 RMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           R   A FL + DL + W  G++ F   LLD D + N G WQW +++     
Sbjct: 357 RHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSASAFFHQ 407


>gi|32400625|dbj|BAC78798.1| cryptochrome [Oryza sativa Japonica Group]
          Length = 568

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 176/374 (47%), Gaps = 19/374 (5%)

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                +I +SF+  +L  P  +++   Q + ++ PF    +          LP   I   
Sbjct: 2   MAAEGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSG 61

Query: 186 G-PVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
              + PS+   F D   +  + +    +  G QN    L  F    + +Y   R      
Sbjct: 62  DLSMCPSDDLIFEDDSEEGSNALLARAWSPGWQNRDKALTAFLNGPLIHYSVNRKKADSA 121

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMA 296
            TS LSPYL  G LS R+ ++ ++ + +    +    A      +L  +  RE+ R+L  
Sbjct: 122 STSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSF 181

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     KP +       W  +    + W+QG TG+P++DA MR+L   GW+H+R+R++
Sbjct: 182 NHP-CSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 240

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D     RI NP ++G 
Sbjct: 241 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGY 300

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIV--DHKKAC- 467
           +FDP G ++R WLPEL  +PT++IH P             +L  NYPLPIV  D   A  
Sbjct: 301 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDRANARL 360

Query: 468 HHTLNQYYAAKKQS 481
              L++ +  +  S
Sbjct: 361 QEALSEMWQLEAAS 374


>gi|296135391|ref|YP_003642633.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
 gi|295795513|gb|ADG30303.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
          Length = 493

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 110/483 (22%), Positives = 179/483 (37%), Gaps = 47/483 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           ++ LVW + DLR+ D+ AL+A         +A+F+  PE        A+   F    +  
Sbjct: 3   TLALVWFKRDLRVQDHAALHA--AAQCDAALALFVMEPEWIASPECDAQHVQFAADCVAA 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEKR 126
           +++SL+Q G+           D  +  +    + R T LF + +        RDK +   
Sbjct: 61  LRESLTQAGLRLLVR----VGDVPQVFEGVRREMRFTHLFSHEETGPGWTYARDKRVAHW 116

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + + +          P   ++            +     Q  + A    +P      + 
Sbjct: 117 CREQGVIWQEW-----PQNGVVRRLRDRAGWAARW-----QKRMDAPQVPVPQGLRDASK 166

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
           P+   + P   D    A  P    G   AL  L  F   +   Y      P  A +G S+
Sbjct: 167 PLAAGDFPTLRDLRLPAARPTPAAGTAAALSTLHSFLDTRGAQYRRDLSSPLTAERGCSR 226

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-------SWLNELIWREFYRHLMAF 297
           LS +L+ G LS RQ     ++    L    +  A         +   L W   +   +  
Sbjct: 227 LSAHLAFGTLSMRQVHQATEQRIRALQASGEPSARNMAYHLRGFAGRLRWHCHFMQKLED 286

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +             E   +    +AW  G TGFP++DA MR LN  GW++ R+R + 
Sbjct: 287 EPGIEFHNFARASDGLREPEFNPAYFEAWCSGNTGFPMVDACMRCLNATGWINFRMRAML 346

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            SF    L + WR    +   Q LD +   +    Q    +G   +   R+++P  Q   
Sbjct: 347 VSFAAYHLWLHWREPGLHLARQFLDFEPGIHWS--QMQMQSGTTGINTLRVYSPAKQQAD 404

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            DPQG FIR W+PE              W         YP PIV+ + A     ++ YA 
Sbjct: 405 HDPQGEFIRQWVPE--------------WGTSA-----YPPPIVNERSAVKQAKDRIYAI 445

Query: 478 KKQ 480
           ++ 
Sbjct: 446 RQS 448


>gi|282916029|ref|ZP_06323792.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283769853|ref|ZP_06342745.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319977|gb|EFB50324.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460000|gb|EFC07090.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 457

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 134/481 (27%), Positives = 216/481 (44%), Gaps = 35/481 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R   N          D      FI   E       S  ++ +   +L 
Sbjct: 1   MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQYYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLL 123
           +  +SL+++ +                + S+C ++ ++++        Y + E       
Sbjct: 58  RFYQSLNKENLTPYVMSYD-------AVISFCEEKNISEVVVAGDIMSYHLEEYDILHQR 110

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +  Q  +       +        +N   + YKV+T F K     L   D+    +  + 
Sbjct: 111 SQFDQAEITVTLVRGNHYFKASKTMNKQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNELI 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI--LRKFCKEKVYYYVEQRDIPAIQG 241
                 P+N+           D     G   A      ++F +  +  Y   R+      
Sbjct: 171 DIVIAAPNNLK----------DVQIDAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEIL 220

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TSQLS  L+ G+L   + +N L   + +     +S   +++ ELI+REFY  LM  YP  
Sbjct: 221 TSQLSIALAYGLLDIIEIFNDLLARYEE----DESNYEAFIRELIFREFYYVLMTQYPES 276

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              + F P    I W+++    +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL
Sbjct: 277 A-HQSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFL 335

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            KDL ++W  GE++F   L+D D  SN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+
Sbjct: 336 TKDLFINWTWGEDFFRKYLIDYDATSNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPK 395

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
             +I+ +LP LN +  +Y+H  H    +      +L  +YP  IVDH++     L  + A
Sbjct: 396 ALYIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455

Query: 477 A 477
            
Sbjct: 456 L 456


>gi|313228844|emb|CBY17995.1| unnamed protein product [Oikopleura dioica]
          Length = 525

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 119/524 (22%), Positives = 213/524 (40%), Gaps = 57/524 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-HGISARQSH 59
           M+        L W R  LR+ DN+ L AA  +S+A V  V+    E  R    I   +  
Sbjct: 1   MERNLTRHRTLHWFRKGLRLHDNRPLLAAIRSSEA-VYCVYCLDLEWMRANERIGNNRIR 59

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  SL  + ++L + G      + +        + ++C +  +T++ Y R  E+   + 
Sbjct: 60  FLLESLTDLDENLRKIGTRLFVLRGNAR----TAIKTFCREYEITQMTYMRDAEVFYRQL 115

Query: 120 DKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           +  + + +  R ++ +S     L  P  I++       +      ++I +L    L +  
Sbjct: 116 EAEILEEVNRREIVTRSDHGHTLYDPQEIIDANEGQVPLSLDEFYSVIPSLDVPALPAPT 175

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----------FPIGEQNALHILRK------- 221
           V A                 Y    +  +          +P GE  AL  L+        
Sbjct: 176 VTAEMFKSCSVRIEENHQAIYGVPTMASLGLECPRAHTRWPGGETVALERLKYKMKQNTL 235

Query: 222 --FCKEKVYYYVEQRDI--PA--------IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
             F +          +   P            T+ LSPY+++G +SPR  W+  K     
Sbjct: 236 YEFNQGPSTSKAANHEYEIPGTSEPWFETQPETTGLSPYINLGSISPRTFWHGAKNCSEK 295

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW------NKDSHLL 323
           +    +        ++I+REF+  +     +    +      + I+W       + +  +
Sbjct: 296 MRTTVQG-------QMIYREFFYTVAYTVNNFTRIEGNR-ICKDIKWSDPKTNERAAEWI 347

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLD 382
           + +KQG TG+P IDAA+RQ+ T GW+ +  R   ASFL    +   W +G++ F   LLD
Sbjct: 348 EKFKQGMTGYPWIDAAVRQMKTEGWITHISRFSLASFLTVGQMWCSWEVGQQLFEEFLLD 407

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D A N G + W   +   +    +  +P    +++D  G+FIR + PEL N+PTQYI A
Sbjct: 408 ADYALNAGNFLWVTGSAFANQIPVKALDPVKLARKWDTHGSFIRRYCPELKNLPTQYICA 467

Query: 443 PHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           P           +  + ++YP P+++        LN+  A  +Q
Sbjct: 468 PWKAPQDVQLKARAIIGVDYPAPMLNAATMRIQNLNKIKAHNQQ 511


>gi|323438580|gb|EGA96326.1| hypothetical protein SAO11_2569 [Staphylococcus aureus O11]
          Length = 457

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 140/479 (29%), Positives = 223/479 (46%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R   N          D      FI   E       S  ++ +   +L 
Sbjct: 1   MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQYYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILYQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      I EQN     + F +  +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLEHDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +     +S   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIALAYGLLDIIEIFNDLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPESA- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P    I W+++    +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL K
Sbjct: 278 HQSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL ++W  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  
Sbjct: 338 DLFINWTWGEDFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP LN +  +Y+H  H    +      +L  +YP  IVDH++     L  + A 
Sbjct: 398 YIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAL 456


>gi|120553261|ref|YP_957612.1| DNA photolyase FAD-binding subunit [Marinobacter aquaeolei VT8]
 gi|120323110|gb|ABM17425.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Marinobacter aquaeolei VT8]
          Length = 440

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 110/431 (25%), Positives = 187/431 (43%), Gaps = 20/431 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYAS 64
            L W   DLR+ DN AL AA  +    ++ VF+  P  +     +   +   +  F++ S
Sbjct: 3   TLYWFTRDLRLHDNPALLAAARSD--MLLCVFVVDPRWFTGDRFQCRALGDHRWRFLWQS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L+ +++SL   G          + +    L     +  V +L  +R     E  + + L+
Sbjct: 61  LMALERSLRPMGQRLHI----AWGEPEVVLPELAREHGVQRLIRSRLPGTEEAAQWQALK 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPVPAIR 183
            RL   V  + F+   +   G +     ++   ++ FRK + +       LR   V A+ 
Sbjct: 117 TRLPE-VTFQQFETLGMFAEGQLPMELAELPDTFSQFRKQVEKAEQPDHTLRIRTVSALP 175

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQ 240
                   N  +    P       F  GE+  L  L+ F   + ++  Y E R+ +    
Sbjct: 176 PPPGFPEDNRGQCPPIPEPIHRSPFTGGEEAGLAQLQAFVFGQHRIANYKETRNALDDWG 235

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +S+ SP+L+ G LS R+    +  E  +         +    EL+WRE++      +  
Sbjct: 236 SSSKFSPWLANGCLSAREVVAAI--EQYERQHTRNDSTYWLWFELLWREYFYWYALKHGG 293

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +      ++       H  +AW +G T +PI++AAM QL   G++ NR R + AS 
Sbjct: 294 RLFSRDG-VQRKRRPVTFYGHRFKAWCEGNTQYPIVNAAMNQLRETGYISNRARQLVASC 352

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L+ +L +DWR G  +F  QL+D D+ASN G WQ+ A  G D     R FN   Q +++DP
Sbjct: 353 LINELELDWRYGAAWFEQQLVDYDVASNYGNWQYLAGVGADPRG-LRQFNLDKQAQQYDP 411

Query: 421 QGTFIRHWLPE 431
           +  F+  W  E
Sbjct: 412 EEAFVHRWQGE 422


>gi|323441460|gb|EGA99114.1| hypothetical protein SAO46_2584 [Staphylococcus aureus O46]
          Length = 457

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 140/478 (29%), Positives = 223/478 (46%), Gaps = 31/478 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R   N          D      FI   E       S  ++ +   +L 
Sbjct: 1   MAIAVL-LNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQYYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILYQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      I EQN     + F +  +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLEHDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   + +     +S   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSIALAYGLLDIIEIFNDLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPESA- 277

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P    I W+++    +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + FL K
Sbjct: 278 HQSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL ++W  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  
Sbjct: 338 DLFINWTWGEDFFRKYLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +I+ +LP LN +  +Y+H  H    +      +L  +YP  IVDH++     L  + A
Sbjct: 398 YIKTYLPVLNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKA 455


>gi|297624491|ref|YP_003705925.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
           17093]
 gi|297165671|gb|ADI15382.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
           17093]
          Length = 486

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 110/492 (22%), Positives = 188/492 (38%), Gaps = 55/492 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V+LVW + DLR+ D+  L  A       V+ +++  PE +     S      +  SLL 
Sbjct: 6   PVNLVWFKRDLRVADHAPLREAARRG--AVLCLYVYEPEVYGAETFSGAHLELLNQSLLS 63

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKR 126
           ++  L+ +G    +       +    L++      +  L+ + +  +     RD+ +   
Sbjct: 64  LEAELAARGGRLVFR----VGEMPAVLEALHRDLPLAALYAHEETGDWASFERDRRVRAW 119

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + R +                           PF +     +V+   R  P   +    
Sbjct: 120 ARSRGV---------------------------PFYEFPSAGVVRG-ARLPPPARLVAPA 151

Query: 187 PVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
            V        ++          P  GE  A   L  F   +   Y+     P  A++  S
Sbjct: 152 AVPAERFRTPWELGLAPSPQNLPTAGEAAARAALESFLTVRGRGYLGGISSPERALRYAS 211

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF------SWLNELIWREFYRHLMAF 297
           +LSPYL++G LS RQ +       ++L     +G+       ++   L WR+ +   + +
Sbjct: 212 RLSPYLALGNLSVRQVFAASARRRLELRAHLGAGSRFERALLAFETRLRWRDAFIQKLEW 271

Query: 298 YPSVCM---GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           YP        + F    E +        L+A+  G TG+P++DA MR L   GW++ R+R
Sbjct: 272 YPRTEFENLNRGFDGMREGLPEVLARERLEAFAAGRTGYPMVDACMRALQAGGWLNFRMR 331

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            +  SF    L +DWR          LD +   +    Q  +       P  RI++P  Q
Sbjct: 332 ALLVSFACYHLWLDWRPVGRLLARGWLDYEPGIHWPQLQMQSGVTGVHAP--RIYSPAKQ 389

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACH 468
            +  DP G FIR W+PEL  +PT  +  P +       +    +  +YP PIVD K A  
Sbjct: 390 ARDHDPTGAFIRRWVPELAGLPTHDLAEPWAAPPLVQTMLGCVVGKHYPAPIVDPKAAYA 449

Query: 469 HTLNQYYAAKKQ 480
                  A + +
Sbjct: 450 EARRTLGAWRAR 461


>gi|119618202|gb|EAW97796.1| cryptochrome 1 (photolyase-like), isoform CRA_b [Homo sapiens]
          Length = 427

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 137/301 (45%), Gaps = 17/301 (5%)

Query: 194 PRFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLS 246
           P   +  F        ++P GE  AL  L +  + K +    +R            + LS
Sbjct: 34  PSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLS 93

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  G LS R  + +L + +  +  K  S   S   +L+WREF+       P     + 
Sbjct: 94  PYLRFGCLSCRLFYFKLTDLYKKVK-KNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEG 152

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DL 365
             P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL
Sbjct: 153 -NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDL 211

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W  G + F   LLD D + N G W W  S  +    +F  + P   G+R DP G +I
Sbjct: 212 WISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYI 270

Query: 426 RHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R +LP L   P +YI+ P +  +      K  + +NYP P+V+H +A    + +     +
Sbjct: 271 RRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQ 330

Query: 480 Q 480
           Q
Sbjct: 331 Q 331


>gi|310791567|gb|EFQ27094.1| DNA photolyase [Glomerella graminicola M1.001]
          Length = 628

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 116/548 (21%), Positives = 192/548 (35%), Gaps = 79/548 (14%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA     A +  +F   P    +      +  F+      + +
Sbjct: 8   IYWFRTDLRLHDSPALAAALALDPAVLWPIFTWDPHYVYRARGGLNRWQFLLDCQNDLSE 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           S+++     +       +             +VT L + +  +     RD+++ +     
Sbjct: 68  SITKLNSRSKLFVL--REGPQTLFPKLFKAWKVTHLVFEKDTDAYARERDEVVMRAASEA 125

Query: 131 VICKSFD-DSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI------ 182
            +         L    +++  H  +     +  + A  +    A     P          
Sbjct: 126 GVEVIVKSGRTLWDSDAVVAKHGGKPTMSISQLQTAGAKVGPIAKPIPAPQSLPNPGEMP 185

Query: 183 ---------------------------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215
                                      ++ GP     I    +  F         GE  A
Sbjct: 186 VDFGQTPPETEPDFNAEQRTEGDAAYAKIAGPEGDFAIETMEELGFPPASTPHRGGETRA 245

Query: 216 LHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           L +L +   +K Y   + + +  PA    Q T+ +SP+L  G LS R+ + R++      
Sbjct: 246 LGMLEEILADKKYTATFEKPKTSPAAFEPQSTTFMSPFLHFGALSVREFYWRVRAVVDAY 305

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN------------- 317
                    S L +L++R+ Y    A            P+   I W+             
Sbjct: 306 GKGASKVPESLLGQLLFRDMYFAAHAALGYSFTQTANNPYCRFIPWHLPSKVDAKTGLVT 365

Query: 318 --------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVD 368
                   +     + WK G TGFP IDA MRQL   GW+H+  R   A FL +    +D
Sbjct: 366 GEYHVDSTQADEWFRRWKYGVTGFPWIDALMRQLREEGWIHHLGRHSVACFLTRGGCYID 425

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           W  G E F   LLD + A N G WQW  S       YFR ++P   G+++D QG ++R W
Sbjct: 426 WERGCEVFEEWLLDHEPACNAGNWQW-LSCTAFFSQYFRCYSPVSFGQKWDKQGAYVRRW 484

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLN--------------YPLPIVDHKKACHHTLNQY 474
           +PEL ++  +YI+ P      +                   YP P+ D  +     L   
Sbjct: 485 VPELKDLDAKYIYEPWKAPLPDQKKAGVRVTGRGETQERGVYPKPMFDFNERRTACLAAM 544

Query: 475 YAAKKQSL 482
             A +  L
Sbjct: 545 KKAYEVGL 552


>gi|255022957|ref|ZP_05294943.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           J1-208]
          Length = 246

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 116/248 (46%), Positives = 151/248 (60%), Gaps = 13/248 (5%)

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  TS LS YL  G +S R  W  L+E       +   G  ++  EL WR+FY  +   +
Sbjct: 1   MDKTSHLSRYLRTGEISIRTIWQALQE------TEATEGRATFEKELCWRDFYNMIYVSF 54

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P+    +P       IEW  +    +AW++G TGFP++DAAMRQL   GWMHNRLRMITA
Sbjct: 55  PNQ-KNEPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITA 113

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           SFL KDLL+DWR GE+YF   L+D D ASN GGWQWAAST  D+VPYFRIFNPT Q ++F
Sbjct: 114 SFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTATDAVPYFRIFNPTTQAQKF 173

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           DP G FIR ++ EL N+P +YIH P    +         L  +YP P+VDHK+     + 
Sbjct: 174 DPTGKFIRKYVKELANLPDKYIHQPEKMSETVQKEHGLILGKDYPFPLVDHKERRKLAIA 233

Query: 473 QYYAAKKQ 480
           +Y  +K+ 
Sbjct: 234 RYEFSKEH 241


>gi|257373039|ref|YP_003175813.1| deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
           12286]
 gi|257167763|gb|ACV49455.1| Deoxyribodipyrimidine photo-lyase [Halomicrobium mukohataei DSM
           12286]
          Length = 526

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 116/483 (24%), Positives = 197/483 (40%), Gaps = 39/483 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69
           +VW R +LR TD+ AL  A    D  V+ +F+  P+ +   G++   +   ++ S+  ++
Sbjct: 23  VVWHRRNLRTTDHGALSYAGEEYDT-VLPLFVFDPQFYGNDGLACDARLLLLHESVESLR 81

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +     G    Y       D +  L +         +           +RD         
Sbjct: 82  RLYEAVGGTLSYAHG----DPLSVLSAL-AAAGWDIVATADPTARYGRQRDDRAAAHCDV 136

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           R     F DS     G + + A                +    D   +   +  L G V+
Sbjct: 137 R-----FVDSD----GLVRDQAWPRAGWSDRVEAWFESSPHSWDPADVSFAS--LPGTVS 185

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSP 247
            ++I R +D    A   + P G       LR+F  + +  Y      P  A  GTS LSP
Sbjct: 186 VADIERTYDV-HAAKTTVPPGGRAAGARRLRQFVAD-IEQYPGNISAPTDARTGTSGLSP 243

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G LS R+ +  + +        P +G   +++ L W + Y   +  +         
Sbjct: 244 HLRFGSLSVREVYRYVMDNAP-----PCTGREMFVSRLYWNKHYHQKLEDWSGWTTTAVN 298

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                    + D  L+ AWK+G TGFP++DA+MR L   GW++ R+R + AS        
Sbjct: 299 PAMRGCRAESHDPELVTAWKRGTTGFPMVDASMRCLVETGWLNFRMRAMCASVFADLFQQ 358

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            W+IG +++   L+D D A N    QW +  G       RI+NP  Q +  DP GTF+  
Sbjct: 359 PWQIGADFYHYHLIDADPAINYT--QWQSQAGTVGTNLMRIYNPIKQVRDNDPDGTFVST 416

Query: 428 WLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACHHTLNQYY----AA 477
           ++PEL  +P +Y+  P             ++  +YP P+V+++ A    + +Y     AA
Sbjct: 417 YVPELAPLPAEYLPRPEKTPLHVQEACGVEIGTDYPYPVVEYEAARQRAIERYERLEPAA 476

Query: 478 KKQ 480
           ++ 
Sbjct: 477 RQA 479


>gi|311696907|gb|ADP99780.1| deoxyribodipyrimidine photolyase [marine bacterium HP15]
          Length = 440

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 107/429 (24%), Positives = 184/429 (42%), Gaps = 21/429 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYAS 64
            L W   DLR+ DN +L AA  +    ++ +++  P  +     +   +   +  F++ S
Sbjct: 3   TLYWFTRDLRLHDNASLLAASKSD--MLLCLYVVDPRWFAPGPLQSKAMGDHRWRFLWQS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L+ +++SL   G          F +    +        + ++  +R     E  + + ++
Sbjct: 61  LMALERSLRPLGQRLHI----AFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIK 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAI 182
            RL   V  + F+   L   GS+     ++   ++ FRK + +   +    LR   + A+
Sbjct: 117 DRLPKAV-FQQFETLSLFTEGSLPMALEELPDTFSQFRKQVEKTGDRCSERLRIRTLTAL 175

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAI 239
                    N       P       F  GE   L  L++F      +  Y E R+ +   
Sbjct: 176 PPPPGFPEDNRGDCPPIPEPVHPLQFMGGEAAGLARLQEFLYGNHSIDRYKETRNALDTW 235

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +S+ SP+L+ G LS R+    + E   +         +    EL+WRE++      + 
Sbjct: 236 DASSKFSPWLANGCLSVREVAETITEY--EASETKNESTYWLWFELLWREYFYWYALKHG 293

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +    +      ++       H  +AW QG T +PI++AAM QL   G+M NR R + AS
Sbjct: 294 ANLFRRDG-VQRKRRHGTFYGHRFKAWCQGNTEYPIVNAAMNQLRETGYMSNRARQLVAS 352

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
             + +L +DWR G  +F  QL+D D+ SN G WQ+ A  G D     R FN   Q +++D
Sbjct: 353 CFINELGLDWRYGAAWFEEQLIDYDVGSNYGNWQYLAGVGADPRG-LRQFNLEKQTQQYD 411

Query: 420 PQGTFIRHW 428
           P GTFI  W
Sbjct: 412 PTGTFIDRW 420


>gi|331227925|ref|XP_003326630.1| cryptochrome DASH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309305620|gb|EFP82211.1| cryptochrome DASH [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 596

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 143/590 (24%), Positives = 222/590 (37%), Gaps = 132/590 (22%)

Query: 8   SVHLVWLRNDLRITDNKALYA----------ACHNSDAK--VIAVFIATPEQ-------- 47
           S+ +   RNDLR+ DN  L            A   +     V+ +++    Q        
Sbjct: 7   SLTIALFRNDLRLHDNPILTHSHLATVKEGDAVRRNKVSEYVLPLYVFDERQIELSGLEG 66

Query: 48  WRQHGISAR------------QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95
           +RQHG  AR            + +F+  S+ +++  L + G             +++ ++
Sbjct: 67  YRQHGGPARTEVCGFWRTGSHRLNFLCQSVYELKHQLKKSGSDLLVRFGVVEATTLKIIE 126

Query: 96  SYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRL---QHRVICKSFDDSVLLPPGSILNHA 151
                   V  ++  ++    EV  +K L K L    H+V    F    L+ P  +    
Sbjct: 127 ELQRNGFSVDHVYMAKEVAFEEVGTEKRLAKLLGELAHKVPLTLFHSRSLVHPDDLPFTI 186

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPVTPSNIPRFFDYPF--------Q 202
            +   VYTPFR  +         R L P+P      P  P  I +    P         Q
Sbjct: 187 NKTPDVYTPFRSKVESLPADQLCRPLLPLPEKLQPFPALPETILKAAPEPGYSGSLCEGQ 246

Query: 203 AIDPMF-----------------------------------PIGEQNALHILRKFC---- 223
             D +F                                     GE  AL  L  +     
Sbjct: 247 GFDEVFARLVKPLLSNPDIPHDPKEANTQDYKPDPRSAFPYQGGESEALRRLDDYFFKGN 306

Query: 224 KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +  V  Y   R+ +   Q +++ SP+L+ G +SPR+  + L +   +         +  L
Sbjct: 307 QPPVRSYKTTRNGLLGHQYSTKFSPFLAFGCISPRKIIHSLWDH--EAKFGSNKDTYWVL 364

Query: 283 NELIWREFYRHLMAFYPS--------------------VCMGKPFIP-----WTEKIEWN 317
            E++WR+++  +   +                      +   KPF        ++  E  
Sbjct: 365 FEILWRDYFIFISQKFGRRLFLIKGFEGRIDPKGATKKLSYWKPFKDEKMNQQSKGKETP 424

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
            D + L   + G TG P IDA M +L   G+M NR R   ASFL KDL +DWRIG E+F 
Sbjct: 425 VDRNALAWLR-GKTGVPFIDANMIELRESGFMSNRGRQNVASFLAKDLELDWRIGAEWFE 483

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
           S LLD D  SN G WQ+ A  GND     R FNP  Q K +D QG +++HW+P+L + PT
Sbjct: 484 SALLDYDPCSNYGNWQYVAGVGNDPR-TSRQFNPIKQAKDYDSQGDYVKHWIPDLKSFPT 542

Query: 438 QYIHAPHSWLD-----------------KNDLSLNYP-LPIVDHKKACHH 469
             I +P                      K     +YP  PI++ +    H
Sbjct: 543 NRIQSPWLMNSQEWDKHLGSSTKEDKENKTGQKDDYPRRPILEQQAWKKH 592


>gi|283469986|emb|CAQ49197.1| FAD binding domain of DNA photolyase protein [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 457

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 139/479 (29%), Positives = 230/479 (48%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N  L+   +     + A +   PE+      S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      I EQN     + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H  H    +      +L  +YP  IVDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTHRNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFKAL 456


>gi|224102189|ref|XP_002312581.1| predicted protein [Populus trichocarpa]
 gi|222852401|gb|EEE89948.1| predicted protein [Populus trichocarpa]
          Length = 573

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 111/449 (24%), Positives = 190/449 (42%), Gaps = 59/449 (13%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           + S  +VW R DLRI DN AL  A    D  V  VFI  P++  Q         ++  S 
Sbjct: 2   SSSKTIVWFRRDLRIEDNPAL--AASARDGCVFPVFIWCPKE-GQFYPGRVSRWWLKQSF 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            Q+ +SL                 ++  L         T + +N  Y+   + RD  +++
Sbjct: 59  AQLGQSLE-------------ISCTVGALLDSIETIGATTVAFNHLYDPVSLVRDHNIKE 105

Query: 126 RLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +L    I  +S++  +L  P  I +     +  +  +R       ++      P   +  
Sbjct: 106 KLVELGIFVQSYNGDLLYEPWEIYDERGYAFTTFEAYRDKCWHMQMEPVSHLPPWRLVPA 165

Query: 185 TGPVTPSNIPRF--FDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            G +   ++      D   ++ + +    +  G  NA  +     + +V  +        
Sbjct: 166 AGTIVMCSVEELGLEDEAEKSSNSLLGRGWSPGWGNAHLVGHAKSRLRVGSF-------- 217

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHL 294
              +S LSPYL  G LS R+ +  ++ +      +     K     +L  +  RE  R+L
Sbjct: 218 ---SSLLSPYLHFGELSVRKVFWCVQMKQLLWSKEENSVGKESVTQFLRSIGLRECSRYL 274

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +P     +  +   +   WN +    +AW+QG TG+P++D  MR+L  IGW+HNR+R
Sbjct: 275 CFNFP-FTHERLLLSNLKYFPWNANQVHFKAWRQGRTGYPLVDDGMRELWAIGWIHNRIR 333

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            I +SF VK LL+ WR G              ++  GWQ+ + +  D+    R+ NP IQ
Sbjct: 334 AIVSSFAVKVLLLPWRWGL-------------NDILGWQYISGSLPDAHELERLDNPEIQ 380

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           G +FDP+G +       L  +PT++IH P
Sbjct: 381 GSKFDPEGEY-------LTRMPTEWIHHP 402


>gi|240047725|ref|YP_002961113.1| hypothetical protein MCJ_006150 [Mycoplasma conjunctivae HRC/581]
 gi|239985297|emb|CAT05310.1| HYPOTHETICAL Deoxyribodipyrimidine photo-lyase [Mycoplasma
           conjunctivae]
          Length = 434

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 222/474 (46%), Gaps = 52/474 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAK-VIAVFIATPEQW--RQHGISARQSHFIYASL 65
           +++     D+R+ DN  L      ++ + +   FI   +Q   +    S +   F+  +L
Sbjct: 1   MNIFLFHRDIRVEDNLGLLNLVEETNGENIFLFFIYNKKQLYEKNEYFSQKAFDFLNNAL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + + K   +  I   Y +     + IE  +      ++ +++ N+ +    + RDK L++
Sbjct: 61  INLSK---KVNINLFYAE-----NEIEVFEEILQANKIERIYINKDWSDFALARDKDLKQ 112

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             Q + +I K F+D +L  PG ILN++   YKV+TPF    +  LV+          +  
Sbjct: 113 FCQKNNIIFKEFNDYLLFRPGDILNNSNSFYKVFTPFYNNCVSKLVENLPTV--KKTLHF 170

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              +  ++    F   F+     FP    N++  + +  K  ++ Y + R+  AI    +
Sbjct: 171 YTQIYKNSKSCSFLQEFKYFQTFFP----NSIDQILEILKNNIHDYAKNRNNLAIDSN-K 225

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL--MAFYPSVC 302
           +SP +  G++S RQ    + +E  ++  +        + +LIWREFY H   +A   +  
Sbjct: 226 ISPAIRFGIISIRQLLLYVYQETKNINHE-------LIRQLIWREFYYHFNFLASQTNWN 278

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            G P+      +E+N+    L+ WK+G TGFP+IDAA+++L   G+MHNR RM+ ASFL 
Sbjct: 279 FGNPWNRKFYFLEYNQADEKLKLWKEGKTGFPLIDAAIQELLQTGFMHNRARMVVASFLT 338

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+L +DW  GE++F   L+D D   N+  WQW A  G D+  + RIFNP +Q K+FD   
Sbjct: 339 KNLFIDWHEGEKFFAQHLIDYDPIINHHSWQWVAGCGVDAQLFTRIFNPILQQKKFDSNN 398

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY-PLPIVDHKKACHHTLNQYY 475
            +I  +LP                        NY   PIVD  +  +     + 
Sbjct: 399 YYISKFLP-----------------------TNYQTKPIVDLHETSNKIKKVFQ 429


>gi|56459233|ref|YP_154514.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
 gi|81821701|sp|Q5QXE0|CRYD_IDILO RecName: Full=Cryptochrome DASH
 gi|56178243|gb|AAV80965.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
          Length = 449

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 188/440 (42%), Gaps = 20/440 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFIYAS 64
            L   RNDLR+ DN ALY A   S+  +I  F   P Q     +    +   +  F+  S
Sbjct: 17  GLFVFRNDLRVEDNLALYEAAQRSET-LICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQS 75

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L Q++  L  +G        +        L     +++V  +F ++     E  +  LL+
Sbjct: 76  LKQLRTELEMRGQKLIVLTGTFD----RILTELISERQVDAIFLSQHQGYYERLQLGLLQ 131

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +R    +      ++ L     +      + + ++ FRK +    +  +    PV A+  
Sbjct: 132 QRFP-FLPFHETPNNTLFSEQELPFELADLPETFSQFRKKVE--PLSRNFSVQPVNALPS 188

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY-YVEQRD-IPAIQGT 242
                     +       A D  F  GE+ AL  L  +   +    Y + R+ +     +
Sbjct: 189 LPKNISYPGFKAETLNELASDD-FEGGERAALTHLTSYFSGESAGTYKQTRNALDDFSSS 247

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++ SP+L+ G LS RQ    L+    +      S   S+  EL+WRE++      +    
Sbjct: 248 TKFSPWLAQGCLSVRQIMAALRAYETEFGENESSYWISF--ELLWREYFFWYALKHGKRL 305

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                +   +  + +  S   Q W  G T +PI++A M+QLN  G+M NR R + AS  V
Sbjct: 306 FAFSGLSG-KSPKTSFYSERFQKWCSGNTPYPIVNACMKQLNATGYMSNRGRQLVASCFV 364

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L +DWR G  YF  QL+D D++SN G WQ+ A  G D   + R FN   Q +R+DP  
Sbjct: 365 HELSLDWRYGAAYFEQQLIDYDVSSNWGNWQYLAGVGADPRGH-RQFNLEKQTERYDPDN 423

Query: 423 TFIRHWLPELNNVPTQYIHA 442
            FI  W  +L+  P   + A
Sbjct: 424 EFIERWAGDLSGQPIDSVDA 443


>gi|126662376|ref|ZP_01733375.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38]
 gi|126625755|gb|EAZ96444.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38]
          Length = 440

 Score =  273 bits (697), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 114/444 (25%), Positives = 198/444 (44%), Gaps = 34/444 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYAS 64
            LVW RNDLR  DN +LY AC  +D  VI ++   P  +             +S F+  +
Sbjct: 9   GLVWFRNDLRTIDNHSLYNACRENDT-VIGIYCLDPRHFEITPFGFKKTEKFRSQFLLET 67

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           + ++QK+L +K I    +    +      +     + ++  ++   ++   E   ++ + 
Sbjct: 68  VTELQKNLLEKNIRLLVY----YGYPEILIPEIIAKYQIHSIYSQHEWTSEENEIEQEIR 123

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL-PVPAI 182
             +   V  K+  D  L  P  +     + + +V+T FRK + + +      ++ P P  
Sbjct: 124 NLISA-VNWKNHYDQFLFHPADLPFEDWKKIPEVFTDFRKQIEKKIRVRPTVAISPKPLT 182

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP----------IGEQNALHILRKFCKE--KVYYY 230
            L    TP  IP   D  F +    F            GE +A   ++ +  +  K+  Y
Sbjct: 183 NLIEETTP--IPTLKDLGFDSEASDFKQPEKTAFPFKGGENHAKKRIKDYFWDTKKLAVY 240

Query: 231 VEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            + R+ +     +S+LS +L+ G +S R  +  +++    ++       +  + ELIWR+
Sbjct: 241 KKTRNGLIGKNYSSKLSAWLANGSVSARTIYWEVQKFEKKVI--KNEDTYWLIFELIWRD 298

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +++++   + +       I   ++  WN++      W  G T    ++A M +L   GWM
Sbjct: 299 YFKYISLKHGNKIFQLNGI-LQKEYHWNQNKKAFNQWANGTTPEHFVNANMIELQKTGWM 357

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            NR R   AS+  K+   DWRIG  YF S L+D D+ SN G W + A  GND  P  R F
Sbjct: 358 SNRGRQNVASYWAKEWEQDWRIGAAYFESMLIDYDVHSNYGNWMYNAGVGND--PRDRKF 415

Query: 410 NPTIQGKRFDPQGTFIRHWL-PEL 432
           N   Q + +D  G F + WL PEL
Sbjct: 416 NIKRQAEMYDADGKFQKMWLIPEL 439


>gi|82750393|ref|YP_416134.1| DNA photolyase [Staphylococcus aureus RF122]
 gi|82655924|emb|CAI80328.1| probable DNA photolyase [Staphylococcus aureus RF122]
          Length = 459

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 136/482 (28%), Positives = 217/482 (45%), Gaps = 35/482 (7%)

Query: 7   MSVHL-VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M + + V L    R   N          D      FI   E       S  ++ F   +L
Sbjct: 1   MFMAIAVLLNRMFRTEHNPLFEYIYQQKDDIDACYFIIAEEDMST--ASDLKAQFYRGTL 58

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            +  +SL          + + +  S + + S+C +  ++++          +    +L +
Sbjct: 59  QRFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQ 111

Query: 126 RL---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           R    + R+       +        +N   + YKV+T F K     L   D+    +  +
Sbjct: 112 RSLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRIRDVYHYDLNEL 171

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI--LRKFCKEKVYYYVEQRDIPAIQ 240
                  P+N+           D     G   A      ++F +  +  Y   R+     
Sbjct: 172 IDIVIAAPNNLK----------DVQIGAGSSQAHEQEKWQQFLEHDIQNYENGREYLPEI 221

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            TSQLS  L+ G+L   + +N L   + +     +S   +++ ELI+REFY  LM  YP 
Sbjct: 222 LTSQLSIALAYGLLDIIEIFNDLLSRYEE----DESNYEAFIRELIFREFYYVLMTQYPE 277

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               + F P    I W+++    +AW  G TGFPIIDAAM +L   G+MHNR+RM+ + F
Sbjct: 278 SA-HQSFKPKYRHINWSENEADFKAWCDGQTGFPIIDAAMMELRQTGFMHNRMRMVVSQF 336

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L K+L ++W  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP
Sbjct: 337 LTKNLFINWTWGEDFFRKYLIDYDSASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDP 396

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSWLDK-----NDLSLNYPLPIVDHKKACHHTLNQYY 475
           +  +I+ +LP LN +  +Y+H  H    +      +L  +YP  IVDH++     L  + 
Sbjct: 397 KALYIKTYLPVLNQIDAKYLHDTHQNESELFKQGIELGRHYPKQIVDHQEKRSQVLATFK 456

Query: 476 AA 477
             
Sbjct: 457 TL 458


>gi|158318950|ref|YP_001511458.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec]
 gi|158114355|gb|ABW16552.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EAN1pec]
          Length = 409

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 135/469 (28%), Positives = 191/469 (40%), Gaps = 68/469 (14%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           WLR DLR+ DN AL AA  +   +V+A+F+      R       +  F++  L  +    
Sbjct: 3   WLRRDLRLDDNPALLAAAESG--RVLALFVLDDALRR--PSGPVRLAFLHRCLRDLD--- 55

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
           +Q G                                                        
Sbjct: 56  AQLGGRL----------------------------------------------------- 62

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192
           C        + PG +       Y+V+TPF +A  ++  +    ++P   + L        
Sbjct: 63  CVRTGSPYAVAPGRLRKADGTSYRVFTPFYRAWKEHGWRGP--AIPADPVWLQPADLDGG 120

Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS---QLSPYL 249
                  P      + P GE  A   LR F  E +  Y   RD PA    S         
Sbjct: 121 SEPIPADPELGGTELPPAGEHAAHERLRAFLTESLAGYAAHRDEPAAASESGDAVPGWSG 180

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           +               +           A  + +EL WREFY  ++A  PS         
Sbjct: 181 ASRAGGAGGAGGAGGADAAGGGGGLAGSAEKFRSELAWREFYADVLAGTPSSART-DLTD 239

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
               + +       +AWK G TG+PI+DA MRQL   GW+HNR+RMI ASF+ KDL V  
Sbjct: 240 TLAALAYEPPGDTFEAWKWGRTGYPIVDAGMRQLLAEGWVHNRVRMIEASFVCKDLNVHR 299

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
             G  +++ +L+DGDLASNN GWQW A TG D+ PYFR+FNP  QG++FDP G +IR W+
Sbjct: 300 THGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFRVFNPVSQGRKFDPAGEYIRRWV 359

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           PEL  +P   +H P  W         YP P+VDH       L+++  A+
Sbjct: 360 PELRGLPPDAVHEP--WKLPAGPPNGYPRPVVDHAVERREALDRHARAR 406


>gi|332292004|ref|YP_004430613.1| cryptochrome, DASH family [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170090|gb|AEE19345.1| cryptochrome, DASH family [Krokinobacter diaphorus 4H-3-7-5]
          Length = 432

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 195/436 (44%), Gaps = 24/436 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFI 61
           M   LVW RN+LR  DN +L  A   S  +VI ++   P Q++            ++ F+
Sbjct: 1   MDTALVWFRNNLRTQDNSSLTHAIA-SGKRVIGLYSFDPRQFQIGDFGFKKTEKYRAQFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             ++  ++K+L+   I          +     +     Q  V++++  +++   E     
Sbjct: 60  IETVQNLKKNLNDLNITLIV----THEHPEVTIPDLIDQHDVSEIYSQKEWTREENEVTI 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ----NLVQADLRSL 177
            +E+++ +      +D  +  P  +  N    + +V+T FRK   +      +Q  +++L
Sbjct: 116 AVEEKINNAKHYTHYDQFLFHPEDNPFNSFGDIPQVFTQFRKKCEKESTVQRLQEKIKTL 175

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKE--KVYYYVEQ 233
           P   +       P+      D   +     FP   GE  A + L  +     K+ YY + 
Sbjct: 176 PSKNLLDKESSIPNLQELGLDTFTKDHRSAFPWNGGEDEAWNRLNNYFWNTKKLQYYKKT 235

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +     +S+LS +L+ G +S RQ +  +K+   +++       +  + ELIWR++++
Sbjct: 236 RNGLVGEDYSSKLSAWLANGSISARQIYWEVKKFEKEII--SNQDTYWLIFELIWRDYFK 293

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           ++   + +       I   +  +W ++    + W  G T +  ++A M +L   GWM NR
Sbjct: 294 YVSLKHGNDLFKIGGI-LHKNYDWKRNDKAQREWIHGNTTYDFVNANMIELKETGWMSNR 352

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASF  K+   DWR+G  YF S L+D D+ SN   W + A  GND  P  R FN  
Sbjct: 353 GRQNVASFWAKEQQQDWRVGAAYFESVLIDYDVHSNWANWMYNAGVGND--PRDRKFNIK 410

Query: 413 IQGKRFDPQGTFIRHW 428
            Q + +D  G F+R W
Sbjct: 411 RQQEMYDGNGKFVRLW 426


>gi|225011847|ref|ZP_03702285.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A]
 gi|225004350|gb|EEG42322.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A]
          Length = 433

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 114/437 (26%), Positives = 190/437 (43%), Gaps = 24/437 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61
           M   LVWLRNDLR  D  + + AC   + +V+A F   P+      W        ++HF+
Sbjct: 1   MKTALVWLRNDLRFEDQNSFFTACQEHE-RVVAYFSFEPKDYDKTMWGFTKTGKFRTHFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +Q  L  K I       S       WLD    Q + T LF+  ++   E     
Sbjct: 60  LETLRSLQTELENKNISLIVENRSAATGIPFWLD----QLKATALFFQEEWTFEEKMISD 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +  ++ + +   S  D  L  P  +      + KV+T FRK   +        S P   
Sbjct: 116 AVVNQISNDINVYSHYDQFLYHPEDVSMEIQSIPKVFTEFRKKCEKFSNIRPCFSAPKVL 175

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKE--KVYYYVEQ 233
            + +       +P   D+ F            F  G  +    L+ +     ++ YY + 
Sbjct: 176 NKSSLLSETPAMPVLEDFEFTPFTHHANSAFPFKGGMVSGNDHLQNYFWNTKRLSYYKQT 235

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +  +  +S+ SP+L+ G LS R  +  +     ++  K     +  + EL+WR++++
Sbjct: 236 RNGLVGVGYSSKFSPWLANGSLSARVIYWEVMRYEKEV--KKNESTYWLIFELLWRDYFK 293

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           ++   + +       I   ++  WN        W +G T  P ++A M +L   G+M NR
Sbjct: 294 YISLKHGNSIFHLGGI-LKKEYTWNSKQEDFLKWVEGETAEPFVNANMIELKKTGFMSNR 352

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   AS+  K++++DWR+G  YF  QL+D D+ SN G W + A  GND  P  R FN  
Sbjct: 353 GRQNVASYFAKNMMMDWRMGAAYFERQLVDYDVHSNWGNWMYVAGVGND--PRDRKFNIK 410

Query: 413 IQGKRFDPQGTFIRHWL 429
           +Q +R+D  G +   WL
Sbjct: 411 LQAERYDSNGKYQNLWL 427


>gi|328857597|gb|EGG06713.1| hypothetical protein MELLADRAFT_48359 [Melampsora larici-populina
           98AG31]
          Length = 579

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 134/577 (23%), Positives = 220/577 (38%), Gaps = 116/577 (20%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKV------------IAVFIATPEQWRQHGI 53
           A SV +   RNDLR+ DN  ++ A  +S   V            + +++         G+
Sbjct: 2   AKSVTIALFRNDLRVHDNPIIFHAHSSSQKGVDKTRVQRPSDYYLPIYVFDERMVELSGL 61

Query: 54  --------------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93
                                  +  F+  S+ ++Q  L Q+G        S    ++  
Sbjct: 62  PGYQREGSEARTGVCGFWRTGCHRLKFLCESVYELQHQLKQRGSDLVIRFGSIEKVTLSI 121

Query: 94  LDSYC-LQQRVTKLFYNRQYEINEVRRDKLLEKRLQH---RVICKSFDDSVLLPPGSILN 149
           + +      +V ++  N++Y   E+  +  +++ L+     V    F    L+ P  +  
Sbjct: 122 IQALQDTDVKVDQILINKEYASEEIETEVKIDEALKSFKISVPLLFFHTRSLVHPEDLPF 181

Query: 150 HALQMYKVYTPFR--------KALIQNLVQADLRSLPVPAIRLTGP-------------- 187
              +   VYTPFR        + L + L+    R + +P ++   P              
Sbjct: 182 LPSKTPDVYTPFRKHIESLPEQKLCRPLLPCPDRLIGMPPLKEIAPQRGNSGSSYDTMKM 241

Query: 188 ----------------VTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFC----KEK 226
                           +     P+   Y F       +  GE   L  +  +        
Sbjct: 242 DNILESLMKPLLQCPDLACPAFPKLSSYNFDDRSAFPYKGGESEGLRRINDYFYTGNPAP 301

Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           V  Y + R+ +     +++ SP+L+ G LSPR+    L+E   +         +  L EL
Sbjct: 302 VRSYKDTRNGLLGQSYSTKFSPFLAHGCLSPRKIILELREH--EKKFGANKDTYWVLFEL 359

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPW----------------TEKIEWNKDSH-------L 322
           +WR+++  +   Y +                           + ++ N++          
Sbjct: 360 LWRDYFVFITQKYGTALFKLGGFEGVLNPKAASQKIHQWKPFQNLKMNQNQQGSRAINQA 419

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
              W +  TG P +DA M +L   G+M NR R   ASFL KDL VDWRIG E+F SQLLD
Sbjct: 420 ASRWLKAETGIPFLDANMAELRLTGFMSNRGRQNVASFLTKDLYVDWRIGAEFFESQLLD 479

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D +SN G WQ+ A  GND     R FNP  Q K +D +G ++R WLPEL  VP + IH 
Sbjct: 480 YDPSSNYGNWQYVAGVGNDPR-ASRQFNPIKQAKDYDAKGEYVRCWLPELAKVPQKSIHN 538

Query: 443 PH---------SWLDKNDLSLNYP-LPIVDHKKACHH 469
           P          S  +       YP  P+++ +    H
Sbjct: 539 PWLLTSKQWEESVGENQRRPEGYPHRPMLEQQAWKKH 575


>gi|288575582|ref|ZP_05977252.2| deoxyribodipyrimidine photolyase [Neisseria mucosa ATCC 25996]
 gi|288567636|gb|EFC89196.1| deoxyribodipyrimidine photolyase [Neisseria mucosa ATCC 25996]
          Length = 481

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 203/464 (43%), Gaps = 36/464 (7%)

Query: 1   MKATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           +    AM  H LVW R +LRI DN AL AA       V  V++A      +   + RQ  
Sbjct: 49  LSDDIAMQAHTLVWFRRNLRIRDNAALSAAVKRG-LPVAGVWVAKGSSEIR---NPRQDW 104

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F Y +   +  SL+ +G+           + +E L ++  +  V  +  +  Y  +E+ +
Sbjct: 105 FHYQAAAALHGSLAARGVALY------AVNRVEELPAFAARLNVQTVIADEAYTSSEIGQ 158

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  + + L  + +  +  +D  +     I+      Y  +  +++A +    Q       
Sbjct: 159 DNRIWRILDEKGVAFERVNDRAVFAKADIMGSHGAPYTDFPHYKEAWLALFRQRFGGQDA 218

Query: 179 VPAIRLTGPVTPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     T + +P F  +   Q I      GE  A    R+F +E + +Y   +D P
Sbjct: 219 DCRQTEIFQTTSAEMPPFPAWNGQQNIVSAQRGGEDEADKQWRQF-EENIGFYPIMKDFP 277

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A +GTS+LS YLS G +SPR                   GA +WL+ LI R+FY+ L   
Sbjct: 278 ARKGTSRLSAYLSAGCISPRVLAVEA----------AGQGADAWLDNLIRRDFYQQLAYH 327

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
              +       P T+ +       L + W+QG TGFP+IDAAMR L + GW+H  LR +T
Sbjct: 328 RARIE------PETDALSTTFSDDLTERWRQGETGFPLIDAAMRSLKSSGWLHPALRSLT 381

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           A FL   L      G  +F +Q  D D A N G WQ AA          R  +     +R
Sbjct: 382 AEFLCGILHQPSEPGIAWFAAQQTDFDPALNEGNWQTAARNA-----RRRSIDIIQTARR 436

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
            DP GTF+R  +PEL ++P   +H P     + D +  YP P++
Sbjct: 437 LDPDGTFVRRHIPELAHLPANLVHTPWLASSEID-AHGYPSPVI 479


>gi|326404724|ref|YP_004284806.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
 gi|325051586|dbj|BAJ81924.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
          Length = 539

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 103/467 (22%), Positives = 173/467 (37%), Gaps = 21/467 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
              V +VW + DLR+ D+        ++   V+ + I  PE WR   +S RQ  F+   +
Sbjct: 2   GTGVSVVWFKRDLRLADHA--ALTAASAAGTVLPLVIVEPEYWRLPDVSHRQYAFLAGCI 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124
             +  +++  G             +IE L++   +     L+ + +        RD+ + 
Sbjct: 60  EDLAAAIAAAGGRLLV----CVGPAIEVLEALRRRLGGFALWSHEETGNRWTHARDRAVR 115

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +  + + +  +      +  G  L+                +         +LP      
Sbjct: 116 RWARAQGVAWTELRQFGVIRGPALDRDRWAAHWDRMMAAPWLPQPRGIAWAALPEGLAAG 175

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
             P   +            +      G   AL  L  F   +   Y      P       
Sbjct: 176 GVPAAAALGIAP-----DGLRHGQAPGRAAALETLGSFLASRGEDYTRAMSSPVSGEAAC 230

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA--FSWLNELIWREFYRHLMAFYPS 300
           S+LSPYL+ G +S R+          ++    + GA   S++  L W   +   +   P 
Sbjct: 231 SRLSPYLAYGCVSIREAAQAAWRRQREVPAASRWGAALRSFIARLHWHCHFIQKLEAEPE 290

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +PF    E +    D   L AW +G TG+P IDAAMR L   GW++ R+R +  SF
Sbjct: 291 -AEWRPFARIYEGMRPPADPARLAAWAEGRTGYPFIDAAMRYLAAHGWINFRMRAMLMSF 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
              DL + W+           D +   +    Q    +G   +   R+++P  QG   DP
Sbjct: 350 ASHDLFLPWQESGLVLARLFTDYEPGIHWPQCQMQ--SGETGINTVRVYSPVKQGFDQDP 407

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSW--LDKNDLSLNYPLPIVDHKK 465
            G FIR  +PEL  V    +H P      ++  L   YP  IV H++
Sbjct: 408 AGRFIRLHVPELAAVAGALVHEPWRLDAAERARLCPEYPARIVIHEE 454


>gi|79313247|ref|NP_001030703.1| UVR3 (UV REPAIR DEFECTIVE 3); DNA (6-4) photolyase [Arabidopsis
           thaliana]
 gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana]
          Length = 445

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 107/426 (25%), Positives = 168/426 (39%), Gaps = 34/426 (7%)

Query: 5   TAMSV---HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG--------- 52
           T+M+     L+W R  LR+ DN AL  A   S+  +  VF+  P                
Sbjct: 18  TSMATGSGSLIWFRKGLRVHDNPALEYASKGSE-FMYPVFVIDPHYMESDPSAFSPGSSR 76

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
               +  F+  SL  +  SL + G      +    +  +  L     + +V +L +    
Sbjct: 77  AGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCL----QEWKVKRLCFEYDT 132

Query: 113 EINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           +      D  ++       V   S     L  P  I+        +       +      
Sbjct: 133 DPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSC 192

Query: 172 ADLRSLP----VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFC 223
           A    +     +P I   G +  S +P   +  ++  +      F  GE  AL  L K  
Sbjct: 193 AKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSI 252

Query: 224 KEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            +K +   + + +  P+      T+ +SPYL  G LS R  +  L+  + D+  K  S  
Sbjct: 253 SDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK-KHTSPP 311

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S L +L+WREF+       P+    K      ++I WN+D  +L AW+ G TG+P IDA
Sbjct: 312 VSLLGQLLWREFFYTTAFGTPNFDKMKGNR-ICKQIPWNEDHAMLAAWRDGKTGYPWIDA 370

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GWMH+  R   A FL + DL + W  G + F   L+D D A NNG W W + 
Sbjct: 371 IMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSC 430

Query: 398 TGNDSV 403
           +     
Sbjct: 431 SSFFYQ 436


>gi|302332401|gb|ADL22594.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp.
           aureus JKD6159]
          Length = 457

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 137/479 (28%), Positives = 227/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V ++ L    R+  N          +      FI T E       S  ++ F   +L 
Sbjct: 1   MAVAVL-LNRMFRMEHNPLFEYIYQQKEDIDACYFIITEED--MSSASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    ++ +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDIIHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDIYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      I EQN     + F  + +  Y   RD  +   TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLSEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L L+YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGLHYPRQMVDHQEKRTQVLATFKAL 456


>gi|148905938|gb|ABR16130.1| unknown [Picea sitchensis]
          Length = 431

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 165/386 (42%), Gaps = 23/386 (5%)

Query: 115 NEVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
           +  +RD  +++  L+  V   +     +  P  I+        +       LI       
Sbjct: 7   HAQKRDGFVKEFALKLGVDVFTPISHTIFSPEEIIKKNGGKPPLTYQSFIKLIGLPPLPL 66

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVY- 228
               P              IP   D  F  +       F  GE  AL  +    +++ + 
Sbjct: 67  GNGSPSIPPVGIDNSNDLPIPTLTDLGFGDVSQEECNPFIGGETEALKRMDASIQDQKWV 126

Query: 229 -YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
             + + +  P       T+ LSPYL  G LS R  + RL+E +  +  K      S   +
Sbjct: 127 AAFEKPKGDPTAFLKPATTVLSPYLKFGCLSSRLFYQRLQEVYRKVK-KHTEPPVSLEGQ 185

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF+  +    P     +   P  ++I WN D  LL AW+ G TG+P IDA M QL 
Sbjct: 186 LLWREFFYTVAYGTPKFDQMEG-NPICKQIPWNDDDSLLSAWRDGQTGYPWIDAVMVQLR 244

Query: 345 TIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
             GWMH+  R   A FL + DL V W  G + F   L+D D A NN  W W  S      
Sbjct: 245 KWGWMHHLARHAVACFLTRGDLFVHWEKGRDVFDRLLIDSDWAINNSNWMW-LSCSAFFS 303

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYP 457
            Y RI++P   GK++DP G ++R++LP L ++P +YI+ P +         K  +  +YP
Sbjct: 304 QYHRIYSPISFGKKYDPDGKYVRYFLPVLKDMPKEYIYEPWTAPIDVQRKAKCIIGKDYP 363

Query: 458 LPIVDH---KKACHHTLNQYYAAKKQ 480
            P+V H    K C   +   YA  KQ
Sbjct: 364 EPLVSHLGASKNCKEKIAAAYALNKQ 389


>gi|88704316|ref|ZP_01102030.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
 gi|88701367|gb|EAQ98472.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
          Length = 434

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 112/433 (25%), Positives = 177/433 (40%), Gaps = 23/433 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W RNDLR+ DN  L  A    +  ++ ++          G+  ++  FI  SL  +Q
Sbjct: 3   AIYWFRNDLRLHDNPGLVEAAKADELLLLYLWPLQRAWCNTQGLGEQRERFITESLKALQ 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L   G      Q S        +        V  +  ++     E R  ++L +RL  
Sbjct: 63  DDLQPLGQSLLVLQGSPEL----VIPDLVRDYGVDAVHASQCAGSYETRAVRVLRERL-- 116

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +       + L     I     ++ + ++PFR+ + +NL        P+   R    + 
Sbjct: 117 HIPVTEHAGNTLFRRSDIKALCPELPRSFSPFRRKVEKNLE-------PLKPSRDLPQLP 169

Query: 190 PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTS 243
           P     F   P  A+ P        G       L++F     +  Y E R+ +  ++G+S
Sbjct: 170 PPPAVTFHRIPDAAVKPPVGLPLRGGSSAGQRRLKQFLHSGAIRSYKETRNCLDPLEGSS 229

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L++G LS R+    + E   +         +  + EL+WRE++ H  A    V +
Sbjct: 230 TLSPWLALGSLSAREVAAAVHEH--EAQEGANESTYWLVFELLWREYFFHR-ALQDGVSL 286

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +      +      +      W  G T  P+++A M QL   GWM NR R I AS L+ 
Sbjct: 287 FRHGGREGKVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMSNRGRQIAASCLIH 346

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           D  +DWR G  +F   L+D D+ SN G WQ+ A  G D     R FN   Q  ++DP G 
Sbjct: 347 DFGIDWRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRAFNIEKQTAQYDPDGV 405

Query: 424 FIRHWLPELNNVP 436
           FI  W  E    P
Sbjct: 406 FIAKWDGERAAQP 418


>gi|169617021|ref|XP_001801925.1| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
 gi|160703316|gb|EAT80731.2| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
          Length = 1229

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 106/545 (19%), Positives = 186/545 (34%), Gaps = 84/545 (15%)

Query: 17   DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
            DLR+ D+ AL AA       +  ++   P    +  + + +  ++      + +S+++  
Sbjct: 580  DLRLHDSPALKAALDLKPECLYPIWTWDPHYVYRARVGSNRWQYLIDCQNDLSQSITKLN 639

Query: 77   --IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134
                    +    +             ++T L + +  +     RD+ + +  +   +  
Sbjct: 640  PKSKLFLIR----EAPQTLFPKLFKAWKITHLVFEKDTDAYARERDEKVMEIAKEAGVEV 695

Query: 135  SFD-DSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--------- 183
                   L  P  ++  +  +     T  + A  +          P              
Sbjct: 696  VIKVGRTLYDPDELVKENNGKPTMSITQVQNAGKKIGAIPRPIPAPKTLPDPGKTDFNFD 755

Query: 184  ------------------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
                                    L GP     +P   +   +        GE  AL  L
Sbjct: 756  QEKPAQDPDINAVQRDGDEASYSTLAGPNGDFAVPTMQELGLKEATTQHRGGETLALKTL 815

Query: 220  RKFC--KEKVYYYVEQRDIP---AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
             +     E    + + +  P   + Q T+ LSP+L  G LS R+ + R+++       K 
Sbjct: 816  DETIANSEYTATFEKPKTAPTAFSPQSTTLLSPHLHFGSLSVREFYWRVQDIVTSFKGKA 875

Query: 275  KSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK---------------- 318
                 S   +L++R+ Y    A            P    I W+                 
Sbjct: 876  SQPPASLTGQLLFRDMYFGAQAALGYSFGQTYNNPACRFIPWHLPSAIDPATNLITGKYL 935

Query: 319  -----DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIG 372
                      Q WK G TGFP IDA MRQL   GW+H+  R   A FL +    +DW  G
Sbjct: 936  VDSALAESHFQRWKHGRTGFPWIDALMRQLAREGWIHHLGRHAVACFLTRGGCYIDWERG 995

Query: 373  EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
             E F   L+D + A N G WQW  S       +FR ++P     ++D  G F+R ++PEL
Sbjct: 996  AEVFEEFLIDHESACNIGNWQW-LSCTAFFAQFFRCYSPVAFPAKWDKNGDFVRRYVPEL 1054

Query: 433  NNVPTQYIHAPH--------SWLDKNDLSLN-------YPLPIVDHKKACHHTLNQYYAA 477
             +   ++I+ P          W  +   S++       YP P++D  +     +     A
Sbjct: 1055 AHFDKKFIYEPWKAPIADQKKWGCRIVESVDGYVQEGEYPKPMLDFNERRDTCIQAMKNA 1114

Query: 478  KKQSL 482
             +  L
Sbjct: 1115 YRVGL 1119


>gi|153214304|ref|ZP_01949321.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587]
 gi|124115452|gb|EAY34272.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587]
          Length = 462

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 182/432 (42%), Gaps = 22/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR    + +    L S P+
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR----KQVETLSLSSAPI 171

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 172 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 232 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 290 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 349 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 407

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 408 YDPKGEFVAKWC 419


>gi|320104815|ref|YP_004180406.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
 gi|319752097|gb|ADV63857.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
          Length = 559

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 104/481 (21%), Positives = 200/481 (41%), Gaps = 26/481 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W++ D+R+ DN+AL  A     + V+ VF+  P    Q   SA        +L +++
Sbjct: 20  AVWWIKRDMRLADNEALTRAVAEH-SLVLPVFLHEPTLLAQAETSAMHWDAWTQALAELR 78

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRLQ 128
           + + + G          + +++E  ++       T ++ + +       +RD+ +    +
Sbjct: 79  RRVRRAGAEILVG----WGEAVESFEAIRAVFPFTHIYAHEEIGGAFTFQRDRAVRAWCR 134

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTGP 187
            R +          P  S+    +   ++   +R  ++      ++ ++P+ + +R    
Sbjct: 135 RRGVTVIE-----RPQSSVQRGGVDRDRMGELWRSRIVAPPALPEVAAIPLTSELRTWAA 189

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQL 245
            TP+  P+     ++       + E +A   L  F +++   Y      P  A +  S+L
Sbjct: 190 TTPTAPPQAEVIGWRRPSEWQNVNESSAWATLDSFLEQRGRGYSGGISSPNTAFESGSRL 249

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDL--------LIKPKSGAFSWLNELIWREFYRHLMAF 297
           S +L+ G LS RQ +   +    +L          + +    S+L  L WR+ +   +  
Sbjct: 250 SVHLAWGTLSLRQAYQATQARLRELERDPAAHDATRWRRSLRSFLARLHWRDHFIQRLET 309

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +   +P  P  + +E   D  LL+ W++G TGFP++DA MR L T G+ + R+R + 
Sbjct: 310 EPEMEF-RPLHPAYDALEAEDDPELLERWRRGLTGFPLVDAVMRCLATTGFCNFRMRAMA 368

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            S     L +DWR    +      D +   +    Q  A      +   R +NP  Q   
Sbjct: 369 VSVACHALRLDWRTIHPHLAGVFRDYEPGIHFSQLQMQAGVV--GINTIRSYNPFKQALD 426

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            DP   FI  W+PEL ++P + IH+             YP P+VDH+      + + Y  
Sbjct: 427 HDPDARFITRWIPELRDLPAERIHS-FDQDPPRSSETTYPPPVVDHRTRTRAWVERLYQL 485

Query: 478 K 478
           +
Sbjct: 486 R 486


>gi|153800458|ref|ZP_01955044.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3]
 gi|124124084|gb|EAY42827.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3]
          Length = 462

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 113/432 (26%), Positives = 182/432 (42%), Gaps = 22/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  VT ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEVTDIYVDAMAGSDERQS 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR    + +    L S P+
Sbjct: 117 IAHIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR----KQVETLSLSSAPI 171

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 172 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKETRNGLD 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 232 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 290 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 349 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAKQAHT 407

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 408 YDPKGEFVAKWC 419


>gi|229515760|ref|ZP_04405219.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae TMA 21]
 gi|229347529|gb|EEO12489.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae TMA 21]
          Length = 504

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + + L+Q KG V          D          +  +  ++ +++  +    +RD  L +
Sbjct: 62  INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q   I          P  +++  A         +++ +       DL       +   
Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                S+IP  +         M   G   A   L  F   +   Y      P  A    S
Sbjct: 172 ALGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++SPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286

Query: 304 GKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +   ++ + D  +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L
Sbjct: 287 RCVNRAYDSLLQQSSDVPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              + VDWR G  Y     LD +   +   +Q     G       RI+NPT Q +  D +
Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FI  W+PEL  VP   +  P       + + +  L   Y  P++D + +     ++ +
Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464

Query: 476 AAKK 479
             +K
Sbjct: 465 QWQK 468


>gi|21282382|ref|NP_645470.1| hypothetical protein MW0653 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|300912677|ref|ZP_07130120.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|21203819|dbj|BAB94518.1| MW0653 [Staphylococcus aureus subsp. aureus MW2]
 gi|300886923|gb|EFK82125.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 457

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 137/479 (28%), Positives = 229/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N  L+   +     + A +   PE+      S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      I EQN     + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  IVDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQIVDHQEKRTQVLATFKAL 456


>gi|91217386|ref|ZP_01254346.1| deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC
           700755]
 gi|91184494|gb|EAS70877.1| deoxyribodipyrimidine photolyase [Psychroflexus torquis ATCC
           700755]
          Length = 436

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 184/441 (41%), Gaps = 26/441 (5%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQS 58
                + +VW RNDLR  D K+L+ AC + +A V+ V+   P  +             ++
Sbjct: 2   QKKQKITIVWFRNDLRTRDQKSLFDACQSENA-VLGVYCFDPSHFETTRYGFKKTEKYRA 60

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  S+ Q+  +L    I              E       +  +T +FY  ++   E R
Sbjct: 61  KFLIESVEQLSDNLQDLNISLHIAH----KHPSEVFKELSERYAITSVFYQTEWTREEKR 116

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL 177
            +  ++  L +    +++ D  L  P  +   + Q + +VYT FRK   +          
Sbjct: 117 VEAKVKSALPNADFIENY-DQFLFHPEDLPYESFQDIPEVYTNFRKKCEKQSEVRQKVPA 175

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKE--KVYY 229
           P P          +  P   D   +  +        F  GE  A   +  +  +  K+ Y
Sbjct: 176 PQPRPTHHLLEERNQAPNLSDLGLENFETDPRSAFPFKGGENEAWKRIEHYFWDTKKLQY 235

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y + R+ +     +S+ S +L+ G +S    ++ ++    +  +K     +  + ELIWR
Sbjct: 236 YKKTRNGLLGTDYSSKFSAWLANGSISAVSIYHEVRA--FEKQVKKNQDTYWLIFELIWR 293

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           ++++++   + +           +  +W  +   L+ W  G T    ++A M ++   G+
Sbjct: 294 DYFKYISLKHGNKIFQIGG-VLNKDYDWGNNKKALRDWINGNTPEDFVNANMIEIKETGF 352

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R    S+  K+   DWRIG  YF S L+D D+ SN G W + +  GND  P  R 
Sbjct: 353 MSNRGRQNVNSYWAKEWKQDWRIGAAYFESMLVDYDVHSNWGNWMYNSGVGND--PRDRK 410

Query: 409 FNPTIQGKRFDPQGTFIRHWL 429
           FN   Q  R+D  G + R WL
Sbjct: 411 FNIKNQADRYDSGGKYQRTWL 431


>gi|254225326|ref|ZP_04918938.1| cryptochrome Cry2 [Vibrio cholerae V51]
 gi|125622167|gb|EAZ50489.1| cryptochrome Cry2 [Vibrio cholerae V51]
          Length = 504

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + + L+Q KG V          D          +  +  ++ +++  +    +RD  L +
Sbjct: 62  INRDLAQSKGEVLIV-----TSDWQTCFSRLAERYAIEAIYSHQEVGLACTFQRDLALAQ 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q   I          P  +++  A         +++ +       DL       +   
Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                S+IP  +         M   G   A   L  F   +   Y      P  A    S
Sbjct: 172 ALGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++SPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286

Query: 304 GKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +   ++ + D  +  L AW+ G+TG P++DA MR L   G+++ R+R +  S L
Sbjct: 287 RCVNRAYDSLLQQSSDVPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              + VDWR G  Y     LD +   +   +Q     G       RI+NPT Q +  D +
Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FI  W+PEL  VP   +  P       + + +  L   Y  P++D + +     ++ +
Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464

Query: 476 AAKK 479
             +K
Sbjct: 465 QWQK 468


>gi|229515204|ref|ZP_04404664.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae TMA 21]
 gi|229347909|gb|EEO12868.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae TMA 21]
          Length = 462

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 182/432 (42%), Gaps = 22/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTLLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR    + +    L S P+
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFAIEALPSTFTQFR----KQVETLSLSSAPI 171

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 172 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 232 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 290 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 349 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAKQAHT 407

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 408 YDPKGEFVAKWC 419


>gi|72160938|ref|YP_288595.1| deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
 gi|71914670|gb|AAZ54572.1| Deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
          Length = 419

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 106/456 (23%), Positives = 196/456 (42%), Gaps = 40/456 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  +V    DLR++D+ AL+AA   +D +V+ +F+  P   R    +  +  ++  +L 
Sbjct: 1   MSTTVVLFTRDLRVSDHPALHAAVTEAD-RVVPLFVVDPALVRV--SARNRIAYLLEALA 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +++  L ++G      Q     +++  +     +     ++ +       VRR + L + 
Sbjct: 58  ELRGLLRERGGELVVRQGDTVAETVRIV----AEAGAQAVYLSADVSAAAVRRARQLTEA 113

Query: 127 LQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           ++      ++F    ++PPG++       Y+++TP+  A      ++   +     +   
Sbjct: 114 VRAAGAHVRTFPGVTVVPPGALRPAHGDHYQIFTPYLNAWRAAQWRSPRPAPERVRLPEG 173

Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
               P             + P     G + A   +R +  +                 S+
Sbjct: 174 LVPGPLPGAELIRLGTGVLAPQREQGGPRTARERIRAWLAQPNQD-------------SR 220

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
              +L  G LSP +     +E     L+  +             +F+  ++  +P +   
Sbjct: 221 FGCHLHFGCLSPLEVALVAREHPRGALLLRQLALR---------DFHHQVLQAFPRLPRA 271

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             + P    I+W  D     AW  G TG PI+DA MRQL   G++  R+RM+TA++L + 
Sbjct: 272 -DYRP--RPIQWRDDDSAFAAWCSGRTGVPIVDAGMRQLLWEGYVPGRIRMLTATYLTQV 328

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L + W+ G ++F S L+DGD+A+N G WQ  A TG    P  RI N   Q +R+DP G +
Sbjct: 329 LRIHWKRGADHFYSLLVDGDVANNYGNWQQIAGTGGVPRPARRI-NLYRQAERYDPSGDY 387

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           +R ++PEL ++    +H P            YP P+
Sbjct: 388 VRRFVPELRSISGSAVHHP-----PVPRPGGYPPPL 418


>gi|262190301|ref|ZP_06048568.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae CT 5369-93]
 gi|262033809|gb|EEY52282.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae CT 5369-93]
          Length = 504

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + + L+Q KG V          D          +  +  ++ +++  +    +RD  L +
Sbjct: 62  INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q   I          P  +++  A         +++ +       DL       +   
Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                S+IP  +         M   G   A   L  F   +   Y      P  A    S
Sbjct: 172 ALGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++SPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286

Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +   ++ + D+    L AW+ G+TG P++DA MR L   G+++ R+R +  S L
Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              + VDWR G  Y     LD +   +   +Q     G       RI+NPT Q +  D +
Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FI  W+PEL  VP   +  P       + + +  L   Y  P++D + +     ++ +
Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464

Query: 476 AAKK 479
             +K
Sbjct: 465 QWQK 468


>gi|312900797|ref|ZP_07760094.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0470]
 gi|311292278|gb|EFQ70834.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0470]
          Length = 267

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 120/262 (45%), Positives = 153/262 (58%), Gaps = 13/262 (4%)

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
            +K+  Y  +RD P    TS LS +L  G LS R  W  L                ++  
Sbjct: 2   DQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQEL------ASAPSSLSKETFKK 55

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           EL WR+FY  + + +P     +        I+W  D  +   W++G TG+PIIDAAMRQL
Sbjct: 56  ELAWRDFYNMIYSTFPQQ-KEEAIQEKFRYIQWANDPEMFAKWQKGETGYPIIDAAMRQL 114

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           N  GWMHNRLRMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+V
Sbjct: 115 NQTGWMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAV 174

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYP 457
           PYFRIFNP IQ K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP
Sbjct: 175 PYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTRYHVHLGENYP 234

Query: 458 LPIVDHKKACHHTLNQYYAAKK 479
            PIVD+  +   TL  Y  +K+
Sbjct: 235 KPIVDYASSKKQTLFLYEVSKE 256


>gi|49482947|ref|YP_040171.1| DNA photolyase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257424810|ref|ZP_05601237.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427478|ref|ZP_05603877.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430109|ref|ZP_05606493.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432811|ref|ZP_05609171.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435715|ref|ZP_05611763.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903318|ref|ZP_06311209.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905098|ref|ZP_06312956.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908075|ref|ZP_06315906.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910335|ref|ZP_06318139.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282913528|ref|ZP_06321317.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282923446|ref|ZP_06331126.1| DNA photolyase [Staphylococcus aureus subsp. aureus C101]
 gi|283957520|ref|ZP_06374973.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293500575|ref|ZP_06666426.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509521|ref|ZP_06668232.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293524107|ref|ZP_06670794.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|295427267|ref|ZP_06819902.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590384|ref|ZP_06949023.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49241076|emb|CAG39754.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272380|gb|EEV04503.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275671|gb|EEV07144.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279306|gb|EEV09907.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282226|gb|EEV12361.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284906|gb|EEV15025.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314314|gb|EFB44704.1| DNA photolyase [Staphylococcus aureus subsp. aureus C101]
 gi|282322560|gb|EFB52882.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325727|gb|EFB56035.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327740|gb|EFB58022.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331923|gb|EFB61434.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282596273|gb|EFC01234.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus C160]
 gi|283790971|gb|EFC29786.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290921070|gb|EFD98131.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291095580|gb|EFE25841.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467618|gb|EFF10133.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus M809]
 gi|295128655|gb|EFG58286.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576683|gb|EFH95398.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438887|gb|ADQ77958.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315194306|gb|EFU24698.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 457

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 136/479 (28%), Positives = 227/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N  L+   +     + A +   PE+      S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFSKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      I EQN     + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F     +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKSKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD-----KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H              +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFELGIELGRHYPRQMVDHQEKRTQVLAAFKAL 456


>gi|327484373|gb|AEA78780.1| Deoxyribodipyrimidine photolyase, single-strand- specific [Vibrio
           cholerae LMA3894-4]
          Length = 462

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 182/432 (42%), Gaps = 22/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR    + +    L S P+
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR----KQVETLSLSSAPI 171

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 172 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 232 GMDYSTKFSPWLALGAVSPKTIYAILQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 290 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKLGDTPFPIVNACMRQLNQTGYMSNRGRQLV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 349 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 407

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 408 YDPKGEFVAKWC 419


>gi|298208129|ref|YP_003716308.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559]
 gi|83848050|gb|EAP85920.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559]
          Length = 421

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/425 (25%), Positives = 193/425 (45%), Gaps = 26/425 (6%)

Query: 21  TDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-----ARQSHFIYASLLQVQKSLSQK 75
            DN  L  A  N++  VIAV+   P  +             ++ F+  ++  ++++L +K
Sbjct: 2   NDNAVLNHAVANNN-PVIAVYCFDPRHFTTTTFGFKKTGPYRAQFLIETIKNLKETLKEK 60

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICK 134
            I                + +      ++ ++Y +++   E   + L+++ ++   V   
Sbjct: 61  NITLVVSLTKPEHC----ISTLVKNHNISAVYYQKEWTQEEQEVEHLVKESIKTSEVTLH 116

Query: 135 SFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
           S+ D  L  P  I   +  ++ K+YT FRKA  +  V   L +L +   +         I
Sbjct: 117 SYYDQFLFHPKDIPFSSINEIPKIYTAFRKACEKKAVVRPLVNLEINLPKTNLLNEDYAI 176

Query: 194 PRFFDYPFQAI----DPMFP--IGEQNALHILRKFCKE--KVYYYVEQRD-IPAIQGTSQ 244
           P+  D+         +  FP   GE   L  + ++  +   +  Y E R+ +   + +S+
Sbjct: 177 PKLKDFGLSEFTVHPNTAFPYKGGETEGLKRINEYHWDTNHIASYKETRNGMIGSEYSSK 236

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
            S +L+ G +S RQ +  +K+   +  +K     +  + ELIWR+++ ++   Y +    
Sbjct: 237 YSAWLANGSISARQIYWDIKDY--EKKVKKNQSTYWMIFELIWRDYFMYISLKYGNSIFK 294

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              I  ++   WNK    L+ W  G T +  ++A M +L   GWM NR R   AS+  K+
Sbjct: 295 LNGI-LSKDYNWNKSKSALKQWINGTTPYDFVNANMIELKETGWMSNRGRQNVASYWAKE 353

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L  DWRIG  YF S L+D D+ SN G W + A  GND  P  R FN  +Q KR+DP   +
Sbjct: 354 LQQDWRIGASYFESLLIDYDVHSNYGNWMYNAGVGND--PRDRKFNIQLQAKRYDPNREY 411

Query: 425 IRHWL 429
            + WL
Sbjct: 412 RKLWL 416


>gi|282918481|ref|ZP_06326218.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317615|gb|EFB47987.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus C427]
          Length = 457

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 136/479 (28%), Positives = 227/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N  L+   +     + A +   PE+      S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFSKKWRPYLRYRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      I EQN     + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F     +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKSKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFDP+  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDPKAL 397

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD-----KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H              +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFELGIELGRHYPRQMVDHQEKRTQVLAAFKAL 456


>gi|110004787|emb|CAK99121.1| putative deoxyribodipyrimidine photolyase protein [Spiroplasma
           citri]
          Length = 435

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 133/476 (27%), Positives = 208/476 (43%), Gaps = 56/476 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-SARQSHFIYASLLQ 67
           +++     D RI DN  L     N + K+  +FI T EQ + +   S+R    +   L Q
Sbjct: 1   MNIFIFHRDFRIEDNLGLAQ-LANEEKKIYLLFIFTKEQIKANNYFSSRSFQAMVHCLKQ 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + K      +   + +  N    I++L       ++ K++ NR Y    + R K + +  
Sbjct: 60  LTKK-----VHVNFLKSENEQTGIKFL--LEQGYKINKIYTNRDYTPFALNRSKAMRQLS 112

Query: 128 QH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL---PVPAIR 183
           +    I + FDD VLL P +I       Y V+TPF   L ++     + +    P     
Sbjct: 113 KEYNFIYREFDDYVLLEPWTIKTTQNGYYTVFTPFWNKLKEHFNDNHIITYKVNPFLPQH 172

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-GT 242
           L       +I       F        +  + A+  L +        Y + RD+  ++ GT
Sbjct: 173 LKDLEILQDITNVKSSDFNLPLEFEKV--KTAMFQLNQ-------NYQQTRDLVDLENGT 223

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF---YP 299
           +++S  L  GV+S RQC+    E+F            ++  +L WR+FY  +      + 
Sbjct: 224 AKISTALKFGVVSIRQCYLWSIEKFGTFDN-------AFARQLAWRDFYYQVTYNAQLHQ 276

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
             C  + +      I W  +    Q W+ G TG+  IDA M++L   G +HNR RM+ AS
Sbjct: 277 QWCFSENWNKKI-TINWTNNLEWFQKWQNGETGYDFIDAGMKELKETGLLHNRARMVCAS 335

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           FLVK+L +DW  GE+YF  QL+D D   N   WQW A TG D+ P+FRIFNP +Q K++D
Sbjct: 336 FLVKNLQIDWHKGEQYFAQQLIDYDPIINQCSWQWVAGTGFDAQPFFRIFNPELQQKKYD 395

Query: 420 PQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           P  ++   +   L N PT                      IVD+K +    L  Y 
Sbjct: 396 PTSSYCNKF---LKNRPTI-------------------NKIVDYKISVKKALEIYK 429


>gi|15641404|ref|NP_231036.1| deoxyribodipyrimidine photolyase, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121590807|ref|ZP_01678134.1| cryptochrome Cry2 [Vibrio cholerae 2740-80]
 gi|153817778|ref|ZP_01970445.1| cryptochrome Cry2 [Vibrio cholerae NCTC 8457]
 gi|153821321|ref|ZP_01973988.1| cryptochrome Cry2 [Vibrio cholerae B33]
 gi|227081563|ref|YP_002810114.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229505031|ref|ZP_04394541.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae BX 330286]
 gi|229511299|ref|ZP_04400778.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae B33]
 gi|229518417|ref|ZP_04407861.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae RC9]
 gi|229608035|ref|YP_002878683.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae MJ-1236]
 gi|254848511|ref|ZP_05237861.1| cryptochrome Cry2 [Vibrio cholerae MO10]
 gi|255745773|ref|ZP_05419721.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholera CIRS 101]
 gi|262158947|ref|ZP_06030059.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae INDRE 91/1]
 gi|298498528|ref|ZP_07008335.1| cryptochrome Cry2 [Vibrio cholerae MAK 757]
 gi|81858115|sp|Q9KS67|CRY2_VIBCH RecName: Full=Cryptochrome-like protein cry2
 gi|9655888|gb|AAF94550.1| deoxyribodipyrimidine photolyase, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547333|gb|EAX57450.1| cryptochrome Cry2 [Vibrio cholerae 2740-80]
 gi|126511716|gb|EAZ74310.1| cryptochrome Cry2 [Vibrio cholerae NCTC 8457]
 gi|126521139|gb|EAZ78362.1| cryptochrome Cry2 [Vibrio cholerae B33]
 gi|227009451|gb|ACP05663.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229345132|gb|EEO10106.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae RC9]
 gi|229351264|gb|EEO16205.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae B33]
 gi|229357254|gb|EEO22171.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae BX 330286]
 gi|229370690|gb|ACQ61113.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae MJ-1236]
 gi|254844216|gb|EET22630.1| cryptochrome Cry2 [Vibrio cholerae MO10]
 gi|255736848|gb|EET92245.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholera CIRS 101]
 gi|262029132|gb|EEY47784.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae INDRE 91/1]
 gi|297542861|gb|EFH78911.1| cryptochrome Cry2 [Vibrio cholerae MAK 757]
          Length = 504

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + + L+Q KG V          D          +  +  ++ +++  +    +RD  L +
Sbjct: 62  INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q   I          P  +++  A         +++ +       DL       +   
Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                S+IP  +         M   G   A   L  F   +   Y      P  A    S
Sbjct: 172 TLGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++SPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286

Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +   ++ + D+    L AW+ G+TG P++DA MR L   G+++ R+R +  S L
Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              + VDWR G  Y     LD +   +   +Q     G       RI+NPT Q +  D +
Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FI  W+PEL  VP   +  P       + + +  L   Y  P++D + +     ++ +
Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464

Query: 476 AAKK 479
             +K
Sbjct: 465 QWQK 468


>gi|49485563|ref|YP_042784.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253731313|ref|ZP_04865478.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|297208585|ref|ZP_06925014.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|49244006|emb|CAG42432.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|253725054|gb|EES93783.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|296886840|gb|EFH25744.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|329729546|gb|EGG65947.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 457

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 136/479 (28%), Positives = 229/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N  L+   +     + A +   PE+      S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      I EQN     + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|323455593|gb|EGB11461.1| hypothetical protein AURANDRAFT_20741 [Aureococcus anophagefferens]
          Length = 529

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 121/512 (23%), Positives = 191/512 (37%), Gaps = 40/512 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           A     VW R  LR+ DN  L  A      +++ +F+  P   R   + A +  F+  SL
Sbjct: 2   APKTTAVWFRKCLRLHDNAPLVEAAKRG-GRLLPIFVLDPHFARPEFVGAPRYRFLLESL 60

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ---RVTKLFYNRQ-YEINEVRRDK 121
             +  SL ++G      +              C      +V  + +  +  E   V RD 
Sbjct: 61  ADLDASLRKRGSRLCVVRGETEATLDGLFAGACDALPGVKVDAILWEEELVEPWGVARDA 120

Query: 122 LLEKRLQHRVICKSF--DDSVLLPPGSILNHALQMYKVYTPFR-KALIQNLVQADLRSLP 178
            +    + R +  S      +L  P  +L           P   KA             P
Sbjct: 121 RVAAAAKARGVAASAVAGGHLLFDPREVLGACGGKAPTTMPAMVKAAAALGAVPAPLDPP 180

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRD 235
                    +  S++P      ++A          GE   L  L          +    +
Sbjct: 181 ATLPPPPDGLPDSSVPTLEAMGYEAPPAAAFGVAGGESAGLARLEAALARDGGKWARAFE 240

Query: 236 IPAI--------QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            P            T+ LSPYL  G +S R    RL + +            S L +L +
Sbjct: 241 KPKTKSTKFDVDPSTTVLSPYLKFGCVSARLFRARLADVY--AGGSHAQPPTSLLGQLYF 298

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNK------DSHLLQAWKQGYTGFPIIDAAMR 341
           RE        + +     P  P    I W+        +  L+AW+ G TG+P +DAAMR
Sbjct: 299 REMAYANALKHGAAFAASP-SPVCADIPWDDPATDAAAAARLRAWEAGETGYPFVDAAMR 357

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL + DL + W  G   F   LLD D A NN  W   A   +
Sbjct: 358 QLRETGWIHHLARHAVACFLTRGDLWLPWTEGARVFDRDLLDADWAVNNFNWLGLAGVAS 417

Query: 401 DSVPYFRIFNPTIQGKRF-----DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL- 454
            S P+FR+++P    K+      D  G ++  ++PEL  +P +Y +AP +       +  
Sbjct: 418 WSPPFFRVYSPVPNHKQSSLNVDDAAGAYVDRFVPELRKLPAKYKYAPWTAPAAVLAAAG 477

Query: 455 -----NYPLPIVDHKKACHHTLNQYYAAKKQS 481
                 YP P+VDHK      + ++  A++++
Sbjct: 478 VVLGDTYPRPLVDHKVQSKDNIARFKEAQQRN 509


>gi|253732866|ref|ZP_04867031.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253729231|gb|EES97960.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 457

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 135/479 (28%), Positives = 228/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N  L+   +     + A +   PE+      S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      I EQN     + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DQDEANYEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++      W +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKPKYRQIKWSQNETDFNVWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGRHYPRQMVDHQEKRTQVLATFKAL 456


>gi|229529536|ref|ZP_04418926.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae 12129(1)]
 gi|229333310|gb|EEN98796.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae 12129(1)]
          Length = 485

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 109/484 (22%), Positives = 190/484 (39%), Gaps = 30/484 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + + L+Q KG V          D          +  +  ++ +++  +    +RD  L +
Sbjct: 62  INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q   I         LP  +++  A         +++ +       DL       +   
Sbjct: 117 WCQQHDIVWHQ-----LPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                S+IP  +         M   G   A   L  F   +   Y      P  A    S
Sbjct: 172 ALGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++SPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286

Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +   ++ + D+    L AW+ G+TG P++DA MR L   G+++ R+R +  S L
Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              + VDWR G  Y     LD +   +   +Q     G       RI+NPT Q +  D +
Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FI  W+PEL  VP   +  P       + + +  L   Y  P++D + +     ++ +
Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464

Query: 476 AAKK 479
             +K
Sbjct: 465 QWQK 468


>gi|229521502|ref|ZP_04410921.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae TM 11079-80]
 gi|229341600|gb|EEO06603.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae TM 11079-80]
          Length = 499

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + + L+Q KG V          D          +  +  ++ +++  +    +RD  L +
Sbjct: 62  INRDLAQSKGEVLIV-----TSDWQTCFSRLAERYAIEAIYSHQEVGLACTFQRDLALAQ 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q   I          P  +++  A         +++ +       DL       +   
Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                S+IP  +         M   G   A   L  F   +   Y      P  A    S
Sbjct: 172 VLGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++SPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286

Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +   ++ + D+    L AW+ G+TG P++DA MR L   G+++ R+R +  S L
Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              + VDWR G  Y     LD +   +   +Q     G       RI+NPT Q +  D +
Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FI  W+PEL  VP   +  P       + + +  L   Y  P++D + +     ++ +
Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464

Query: 476 AAKK 479
             +K
Sbjct: 465 QWQK 468


>gi|121727525|ref|ZP_01680637.1| cryptochrome Cry2 [Vibrio cholerae V52]
 gi|147673506|ref|YP_001216950.1| cryptochrome Cry2 [Vibrio cholerae O395]
 gi|153212697|ref|ZP_01948354.1| cryptochrome Cry2 [Vibrio cholerae 1587]
 gi|262169310|ref|ZP_06037002.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae RC27]
 gi|121630109|gb|EAX62512.1| cryptochrome Cry2 [Vibrio cholerae V52]
 gi|124116347|gb|EAY35167.1| cryptochrome Cry2 [Vibrio cholerae 1587]
 gi|146315389|gb|ABQ19928.1| cryptochrome Cry2 [Vibrio cholerae O395]
 gi|227013307|gb|ACP09517.1| putative deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
 gi|262022123|gb|EEY40832.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae RC27]
          Length = 504

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + + L+Q KG V          D          +  +  ++ +++  +    +RD  L +
Sbjct: 62  INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q   I          P  +++  A         +++ +       DL       +   
Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                S+IP  +         M   G   A   L  F   +   Y      P  A    S
Sbjct: 172 TLGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++SPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286

Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +   ++ + D+    L AW+ G+TG P++DA MR L   G+++ R+R +  S L
Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              + VDWR G  Y     LD +   +   +Q     G       RI+NPT Q +  D +
Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FI  W+PEL  VP   +  P       + + +  L   Y  P++D + +     ++ +
Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464

Query: 476 AAKK 479
             +K
Sbjct: 465 QWQK 468


>gi|254224954|ref|ZP_04918569.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51]
 gi|125622642|gb|EAZ50961.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51]
          Length = 461

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 181/432 (41%), Gaps = 23/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR       V+    S P+
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 171 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQHYFSSMLPSCYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAKQAHT 406

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 407 YDPKGEFVAKWC 418


>gi|88194464|ref|YP_499258.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|87202022|gb|ABD29832.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|329728519|gb|EGG64952.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 457

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 135/479 (28%), Positives = 228/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N  L+   +     + A +   PE+      S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + Y V+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      I EQN     + F  + +  Y   RD      TS
Sbjct: 171 NFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|57651532|ref|YP_185630.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus COL]
 gi|87161809|ref|YP_493380.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|151220872|ref|YP_001331694.1| hypothetical protein NWMN_0660 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508955|ref|YP_001574614.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140907|ref|ZP_03565400.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258452899|ref|ZP_05700893.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|262048427|ref|ZP_06021312.1| hypothetical protein SAD30_2154 [Staphylococcus aureus D30]
 gi|282921981|ref|ZP_06329679.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9765]
 gi|284023713|ref|ZP_06378111.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus 132]
 gi|294849360|ref|ZP_06790103.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9754]
 gi|304381695|ref|ZP_07364344.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|57285718|gb|AAW37812.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus COL]
 gi|87127783|gb|ABD22297.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|150373672|dbj|BAF66932.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160367764|gb|ABX28735.1| possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257859410|gb|EEV82264.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|259163515|gb|EEW48072.1| hypothetical protein SAD30_2154 [Staphylococcus aureus D30]
 gi|269940268|emb|CBI48645.1| putative DNA photolyase [Staphylococcus aureus subsp. aureus TW20]
 gi|282593834|gb|EFB98825.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9765]
 gi|294823892|gb|EFG40318.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9754]
 gi|302750590|gb|ADL64767.1| deoxyribodipyrimidine photolyase [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304339798|gb|EFM05743.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315197666|gb|EFU28001.1| possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320139977|gb|EFW31838.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320141933|gb|EFW33761.1| FAD binding domain of DNA photolyase [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329313414|gb|AEB87827.1| Possible deoxyribodipyrimidine photo-lyase [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 457

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 135/479 (28%), Positives = 228/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N  L+   +     + A +   PE+      S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + Y V+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      I EQN     + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|153825249|ref|ZP_01977916.1| cryptochrome Cry2 [Vibrio cholerae MZO-2]
 gi|149741077|gb|EDM55136.1| cryptochrome Cry2 [Vibrio cholerae MZO-2]
          Length = 504

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 109/484 (22%), Positives = 190/484 (39%), Gaps = 30/484 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + + L+Q KG V          D          +  +  ++ +++  +    +RD  L +
Sbjct: 62  INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q   I          P  +++  A         +++ +       DL S     +   
Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTSANWLKLDAA 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                S+IP  +         M   G   A   L  F   +   Y      P  A    S
Sbjct: 172 TLGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++SPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286

Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +   ++ + D+    L AW+ G+TG P++DA MR L   G+++ R+R +  S L
Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              + VDWR G  Y     LD +   +   +Q     G       RI+NPT Q +  D +
Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FI  W+PEL  VP   +  P       + + +  L   Y  P++D + +     ++ +
Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQIPLESPYLNPVMDLEASAKQARDRLW 464

Query: 476 AAKK 479
             +K
Sbjct: 465 QWQK 468


>gi|229523510|ref|ZP_04412915.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae bv. albensis VL426]
 gi|229337091|gb|EEO02108.1| deoxyribodipyrimidine photolyase/cryptochrome family protein
           [Vibrio cholerae bv. albensis VL426]
          Length = 506

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 5   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 63

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + + L+Q KG V          D          +  +  ++ +++  +    +RD  L +
Sbjct: 64  INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 118

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q   I          P  +++  A         +++ +       DL       +   
Sbjct: 119 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 173

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                S+IP  +         M   G   A   L  F   +   Y      P  A    S
Sbjct: 174 TLGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 230

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++SPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 231 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 288

Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +   ++ + D+    L AW+ G+TG P++DA MR L   G+++ R+R +  S L
Sbjct: 289 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 348

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              + VDWR G  Y     LD +   +   +Q     G       RI+NPT Q +  D +
Sbjct: 349 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 406

Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FI  W+PEL  VP   +  P       + + +  L   Y  P++D + +     ++ +
Sbjct: 407 GHFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 466

Query: 476 AAKK 479
             +K
Sbjct: 467 QWQK 470


>gi|219117169|ref|XP_002179379.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409270|gb|EEC49202.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 585

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 133/511 (26%), Positives = 224/511 (43%), Gaps = 48/511 (9%)

Query: 3   ATTAMSVHLVWL-RNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF- 60
           A +     +V    +D+RI DN+AL  ACH++   V+ VF+    Q   H   AR +   
Sbjct: 19  AHSLSRPAVVLFGTHDIRIHDNEALLLACHHN--HVLPVFLW---QVPVHHWGARGALQV 73

Query: 61  -IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
            +  +L Q+   LSQ+ I      C N  DS+  L     +   + +++NR+        
Sbjct: 74  VLKEALHQLSLQLSQESINLPL-VCGNTADSVSELCKIASEIGASAVYWNREMTPESREM 132

Query: 120 DKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVY---TPFRKALIQNLVQADLR 175
           ++     L+   +   +   ++L     +          +    PF++A  + L + D  
Sbjct: 133 ERHRATSLKQLDIAAVACQSALLYDVEKLELDEGFHGGHWGTLMPFKRACEKQLGKPDRP 192

Query: 176 SLPVPAIR----LTGPVTPSNIPRFFDYPFQAIDP----------MFPIGEQNALHILRK 221
            L   ++     +  P          +  F+ + P           FP+    A   L  
Sbjct: 193 ILMKESLACLYSVAPPPQDCKSVPIEELGFETVPPSTKWDEPIRERFPMIHYLAQRRLDH 252

Query: 222 FCKEKVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
           F  + +  Y   R    ++  TSQLS YL IG++SPR+ + R+++  +    K      +
Sbjct: 253 FLIKGLPLYESDRSRADMEYATSQLSVYLRIGIISPRELYWRIEDSSLSPEAK-----KT 307

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIID 337
           +   LIWRE   + +  +P     +      E  EW   +++     AWK+G TG+P++D
Sbjct: 308 FARRLIWRELAYYQLFCFPK-MRDRSIRKHYEASEWVTGDEEKGRFNAWKRGLTGYPLVD 366

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           A MR+L T G++   +RM+ ASFLV+ L VDW  G E+F   L D D A N+  WQ A  
Sbjct: 367 AGMRELYTTGYLTQSVRMVVASFLVEYLRVDWTKGAEWFHYTLADADSAINSMMWQNAGR 426

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------D 451
           +G D   +  + +P    +  DP G + R W+PEL+ +P QY+  P    + +       
Sbjct: 427 SGIDQWNF--VLSPENASQ--DPYGEYTRKWVPELSPLPLQYLQRPWQTFEGDLRMAGIV 482

Query: 452 LSLNYPLPIV-DHKKACHHTLNQYYAAKKQS 481
           L   YP  IV D K     ++    A +++S
Sbjct: 483 LGETYPHRIVQDLKGERQKSVESVLAMRRRS 513


>gi|153828573|ref|ZP_01981240.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39]
 gi|148875968|gb|EDL74103.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39]
          Length = 461

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 181/432 (41%), Gaps = 23/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQAAQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR       V+    S P+
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 171 GYPRVLPPIEQGWQLPLMDIVAEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 406

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 407 YDPKGEFVAKWC 418


>gi|297579336|ref|ZP_06941264.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385]
 gi|297536930|gb|EFH75763.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385]
          Length = 462

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 182/432 (42%), Gaps = 22/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLFPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR    + +    L S P+
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR----KQVETLSLSSAPI 171

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 172 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 232 GMDYSTKFSPWLALGAVSPKTIYTMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 290 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRGRQLV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 349 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAKQAHT 407

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 408 YDPKGEFVAKWC 419


>gi|183179386|ref|ZP_02957597.1| cryptochrome Cry2 [Vibrio cholerae MZO-3]
 gi|183012797|gb|EDT88097.1| cryptochrome Cry2 [Vibrio cholerae MZO-3]
          Length = 504

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 108/484 (22%), Positives = 189/484 (39%), Gaps = 30/484 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + + L+Q KG V          D          +  +  ++ +++  +    +RD  L +
Sbjct: 62  INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q   I          P  +++  A         +++ +       DL       +   
Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDDHWQQVMRSPCCDPDLTRANWLKLDAA 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                S+IP  +         M   G   A   L  F   +   Y      P  A    S
Sbjct: 172 ALGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFVRRGREYYRSISSPSLARHACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++SPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286

Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +   ++ + D+    L AW+ G+TG P++DA MR L   G+++ R+R +  S L
Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              + VDWR G  Y     LD +   +   +Q     G       RI+NPT Q +  D +
Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FI  W+PEL  VP   +  P       + + +  L   Y  P++D + +     ++ +
Sbjct: 405 GHFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464

Query: 476 AAKK 479
             +K
Sbjct: 465 QWQK 468


>gi|153830168|ref|ZP_01982835.1| cryptochrome Cry2 [Vibrio cholerae 623-39]
 gi|148874347|gb|EDL72482.1| cryptochrome Cry2 [Vibrio cholerae 623-39]
          Length = 504

 Score =  266 bits (681), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 108/485 (22%), Positives = 190/485 (39%), Gaps = 32/485 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + + L+Q KG V          D          +  +  ++ +++  +    +RD  L +
Sbjct: 62  INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEAIYSHQEVGLACTFQRDLALAQ 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q   I          P  +++  A         +++ +       DL       +   
Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                S+IP  +         M   G   A   L  F   +   Y      P  A    S
Sbjct: 172 TLGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-- 301
           ++SPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286

Query: 302 -CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
            C+ + +    ++      +  L AW+ G+TG P++DA MR L   G+++ R+R +  S 
Sbjct: 287 RCVNRAYDSLLQQSS-QAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSV 345

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L   + VDWR G  Y     LD +   +   +Q     G       RI+NPT Q +  D 
Sbjct: 346 LTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDS 403

Query: 421 QGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +G FI  W+PEL  VP   +  P       + + +  L   Y  P++D + +     ++ 
Sbjct: 404 EGQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRL 463

Query: 475 YAAKK 479
           +  +K
Sbjct: 464 WQWQK 468


>gi|262191004|ref|ZP_06049214.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae CT 5369-93]
 gi|262033105|gb|EEY51633.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae CT 5369-93]
          Length = 461

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 181/432 (41%), Gaps = 23/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQT 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR       V+    S P+
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 171 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 406

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 407 YDPKGEFVAKWC 418


>gi|121727641|ref|ZP_01680744.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52]
 gi|121630028|gb|EAX62435.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52]
          Length = 462

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 183/432 (42%), Gaps = 22/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNTLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLNHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVVGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +     +I +    S+L  P  +      +   +T FR    + +    L S P+
Sbjct: 117 IARIHQDFPSVLIHQQALHSLLSEP-QLPFALEALPSTFTQFR----KQVETLSLSSAPI 171

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 172 GYPRVLPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSMLPSCYKETRNGLD 231

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 232 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 290 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRGRQLV 348

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 349 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 407

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 408 YDPKGEFVAKWC 419


>gi|327484059|gb|AEA78466.1| Cryptochrome [Vibrio cholerae LMA3894-4]
          Length = 485

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 109/484 (22%), Positives = 190/484 (39%), Gaps = 30/484 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + + L+Q KG V          D          +  +  ++ +++  +    +RD  L +
Sbjct: 62  INRDLAQSKGEVLIV-----TSDWQTCFARIAERYAIEVIYSHQEVGLACTFQRDLALAQ 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q   I         LP  +++  A         +++ +       DL       +   
Sbjct: 117 WCQQHDIVWHQ-----LPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                S+IP  +         M   G   A   L  F   +   Y      P  A    S
Sbjct: 172 ALGLRSDIPATW---QSKQAGMQTGGSDMAWATLEDFFARRGREYYRSISSPSLARHACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           ++SPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286

Query: 304 GKPFIPWTEKIEWNKDS--HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 +   ++ + D+    L AW+ G+TG P++DA MR L   G+++ R+R +  S L
Sbjct: 287 RCVNRAYDSLLQQSSDAPAAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVL 346

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              + VDWR G  Y     LD +   +   +Q     G       RI+NPT Q +  D +
Sbjct: 347 THHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDSE 404

Query: 422 GTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQYY 475
           G FI  W+PEL  VP   +  P       + + +  L   Y  P++D + +     ++ +
Sbjct: 405 GQFIHKWVPELAQVPVPLLFEPWLMTPLEAQMYQVPLESPYLKPVMDLEASAKQARDRLW 464

Query: 476 AAKK 479
             +K
Sbjct: 465 QWQK 468


>gi|255066743|ref|ZP_05318598.1| deoxyribodipyrimidine photolyase [Neisseria sicca ATCC 29256]
 gi|255049071|gb|EET44535.1| deoxyribodipyrimidine photolyase [Neisseria sicca ATCC 29256]
          Length = 463

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 198/464 (42%), Gaps = 36/464 (7%)

Query: 1   MKATTAMSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           +    AM  H LVW R +LRI DN AL AA       V  V++    Q      + RQ  
Sbjct: 31  LSDDIAMQAHTLVWFRRNLRIRDNAALSAAVKRG-LPVAGVWV---AQGSSEIPNPRQDW 86

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F Y +   +  SL+ +G+           + +E L +   +  V  +  +  Y  +E+ +
Sbjct: 87  FHYQAAAALHGSLAARGVALY------AVNRVEELPALATRLNVQTVIADEAYTSSEIGQ 140

Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  + + L +  V  +  +D  +     I+      Y  +  +++A +    Q       
Sbjct: 141 DNRIWRILDEQGVAFERVNDRAIFAKADIMGSHGAPYTDFPHYKEAWLVLFRQRFGGQDV 200

Query: 179 VPAIRLTGPVTPSNIPRFFDY-PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                     T   +P F  +   Q +      GE  A    + F +E + +Y   +D P
Sbjct: 201 GGGRAEIFQTTSVEMPSFPAWNGQQDMVSAQRGGEDEAGKQWQHF-EENIGFYPIMKDFP 259

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           A +GTS+LS YLS G +SPR                   GA +WL+ LI R+FY+ L   
Sbjct: 260 ARKGTSRLSAYLSAGCISPRVLATEA----------SGQGADAWLDNLIQRDFYQQLAYH 309

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
              +       P +          L + W+QG TGFP+IDAAMR L + GW+H  LR +T
Sbjct: 310 RARIE------PESAAESAPFSDDLTERWRQGETGFPLIDAAMRSLKSSGWLHPALRSLT 363

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           A FL   L      G  +F +Q  D D A N G WQ AA        + R  +     +R
Sbjct: 364 AEFLCGVLHQPSEHGIVWFATQQTDFDPALNEGNWQTAARNA-----HRRSIDIIQTARR 418

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
            DP GTF+R  +PEL ++P   +H P     + D +  YP P+V
Sbjct: 419 LDPDGTFVRRHIPELAHLPVNLVHTPWLASSEID-AHGYPPPVV 461


>gi|258423340|ref|ZP_05686231.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257846401|gb|EEV70424.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 457

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 135/479 (28%), Positives = 228/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N  L+   +     + A +   PE+      S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLK 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      I EQN     + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F     +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKSKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGRHYPRQMVDHQEKRTQVLAAFKAL 456


>gi|258454058|ref|ZP_05702030.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A5937]
 gi|257863923|gb|EEV86679.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A5937]
          Length = 457

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 134/479 (27%), Positives = 229/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N  L+   +     + A +   PE+      S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F +     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRSYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      + EQN     + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QVIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANHEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|15923681|ref|NP_371215.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926368|ref|NP_373901.1| hypothetical protein SA0646 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148267151|ref|YP_001246094.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393199|ref|YP_001315874.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979019|ref|YP_001441278.1| hypothetical protein SAHV_0688 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315330|ref|ZP_04838543.1| hypothetical protein SauraC_04087 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005483|ref|ZP_05144084.2| hypothetical protein SauraM_03410 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794988|ref|ZP_05643967.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9781]
 gi|258418305|ref|ZP_05682570.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9763]
 gi|258421602|ref|ZP_05684527.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9719]
 gi|258430795|ref|ZP_05688507.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9299]
 gi|258441712|ref|ZP_05690984.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A8115]
 gi|258445852|ref|ZP_05694029.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A6300]
 gi|258449657|ref|ZP_05697759.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A6224]
 gi|269202312|ref|YP_003281581.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282894455|ref|ZP_06302684.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8117]
 gi|282926553|ref|ZP_06334183.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A10102]
 gi|295406409|ref|ZP_06816215.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8819]
 gi|296274755|ref|ZP_06857262.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245136|ref|ZP_06929010.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8796]
 gi|13700582|dbj|BAB41879.1| SA0646 [Staphylococcus aureus subsp. aureus N315]
 gi|14246460|dbj|BAB56853.1| putative deoxyribodipyrimidine photolyase [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740220|gb|ABQ48518.1| Deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149945651|gb|ABR51587.1| Deoxyribodipyrimidine photo-lyase [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721154|dbj|BAF77571.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788960|gb|EEV27300.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9781]
 gi|257839098|gb|EEV63577.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9763]
 gi|257842528|gb|EEV66952.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A9719]
 gi|257849467|gb|EEV73437.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A9299]
 gi|257852181|gb|EEV76108.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A8115]
 gi|257855428|gb|EEV78366.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A6300]
 gi|257857165|gb|EEV80064.1| deoxyribodipyrimidine photo-lyase type I [Staphylococcus aureus
           A6224]
 gi|262074602|gb|ACY10575.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282591446|gb|EFB96518.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A10102]
 gi|282763168|gb|EFC03299.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8117]
 gi|294968554|gb|EFG44577.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8819]
 gi|297177807|gb|EFH37056.1| deoxyribodipyrimidine photo-lyase [Staphylococcus aureus A8796]
 gi|312829185|emb|CBX34027.1| FAD binding domain of DNA photolyase family protein [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315129365|gb|EFT85358.1| hypothetical protein CGSSa03_00150 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329724512|gb|EGG61019.1| deoxyribodipyrimidine photo-lyase family protein [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 457

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 134/479 (27%), Positives = 229/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N  L+   +     + A +   PE+      S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F +     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      + EQN     + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QVIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANHEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|254489917|ref|ZP_05103112.1| cryptochrome, DASH family [Methylophaga thiooxidans DMS010]
 gi|224465002|gb|EEF81256.1| cryptochrome, DASH family [Methylophaga thiooxydans DMS010]
          Length = 441

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 109/428 (25%), Positives = 185/428 (43%), Gaps = 21/428 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIY 62
              L W  NDLR+ DN AL  A  N D ++I +F        P  +    +  ++  F+ 
Sbjct: 3   KTGLFWFNNDLRVHDNPALLEASLNCD-RLICLFCYDTFWDKPTGFNAKPLGDKRRQFLL 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  +Q +L  +G      +     D +  +     +  V  ++ +    + E R+ + 
Sbjct: 62  ESLNDLQHTLEARGQQLIVMKG----DPVAIISELLSKYHVNHVYRSYHVGVYENRQWQH 117

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           L      RV   S+    L     +      +   ++ FRK +    +   ++     A+
Sbjct: 118 LRADFP-RVQFDSYWTHSLFQQRQLPFDLTSLPDTFSQFRKIVESLPIDKPVQMPKTLAV 176

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQR-DIPAIQ 240
               PV+  +        ++     F  GE+ A+  +   F  +    Y   R D+    
Sbjct: 177 ----PVSELHEDTLPLPTYRNSQDHFTGGEKAAIEHMEAYFSSDYPAQYKLLRNDLDHWS 232

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +++ S +L+ G LS ++   +L++   +         +    EL+WRE++    AF   
Sbjct: 233 HSTKFSAWLANGSLSVKRLLQQLRQ--FEKTHTANESTYWIFFELLWREYF-QWYAFRYR 289

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             + +P     +KI         Q W  G T +P+++A M+QLN  G+M NR R I AS 
Sbjct: 290 HKLFRPQGLGKKKITCCFYPERYQKWAHGNTPYPLVNALMKQLNDTGYMSNRGRQIVASC 349

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            + +L +DWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   Q +++DP
Sbjct: 350 FINELELDWRFGAAYFEQQLIDYDVAANWGNWQYIAGVGADPRG-GRHFNIDKQQRQYDP 408

Query: 421 QGTFIRHW 428
           Q TFI+ W
Sbjct: 409 QQTFIQKW 416


>gi|254286160|ref|ZP_04961120.1| cryptochrome Cry2 [Vibrio cholerae AM-19226]
 gi|150423829|gb|EDN15770.1| cryptochrome Cry2 [Vibrio cholerae AM-19226]
          Length = 504

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 108/485 (22%), Positives = 190/485 (39%), Gaps = 32/485 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            ++LVWL+ DLR+TD+  L AA   S    + +++  P        S R   F++ SL  
Sbjct: 3   KINLVWLKRDLRLTDHAPLQAAL-TSGRPTLLLYLFEPMLLGDAHYSERHWRFVWQSLQA 61

Query: 68  VQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           + + L+Q KG V          D          +  +  ++ +++  +    +RD  L +
Sbjct: 62  INRDLAQSKGEVLIV-----TSDWQTCFSRIAERHAIEAIYSHQEVGLACTFQRDLALAQ 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             Q   I          P  +++  A         +++ +       DL       +   
Sbjct: 117 WCQQHDIVWHE-----FPYAAVIRGAQTRKNWDEHWQQVMRSPCCDPDLTRANWLKLDAA 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
                S+IP  +         M   G   A   L  F   +   Y      P  A    S
Sbjct: 172 TLGLRSDIPATW---QSKQAGMQTGGSDMAWTTLEDFFARRGRDYYRSISSPSLARHACS 228

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-- 301
           ++SPYL+ G +S R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 229 RMSPYLAWGNISLREMYQTLLKHWSVAGFRRSLIALS--SRLHWHCHFIQKFESECEMEF 286

Query: 302 -CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
            C+ + +    ++      +  L AW+ G+TG P++DA MR L   G+++ R+R +  S 
Sbjct: 287 RCVNRAYDSLLQQSS-QATTAQLAAWQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSV 345

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L   + VDWR G  Y     LD +   +   +Q     G       RI+NPT Q +  D 
Sbjct: 346 LTHHMNVDWRAGVTYLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPTKQAQEHDS 403

Query: 421 QGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           +G FI  W+PEL  VP   +  P       + + +  L   Y  P++D + +     ++ 
Sbjct: 404 EGLFIHKWVPELAQVPVPLLFEPWLMTPFEAQMYQVPLESPYLKPVMDLEASAKQARDRL 463

Query: 475 YAAKK 479
           +  +K
Sbjct: 464 WQWQK 468


>gi|15641816|ref|NP_231448.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121585836|ref|ZP_01675630.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80]
 gi|147674040|ref|YP_001217353.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395]
 gi|153817785|ref|ZP_01970452.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457]
 gi|153821143|ref|ZP_01973810.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33]
 gi|227081943|ref|YP_002810494.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|229508087|ref|ZP_04397592.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae BX 330286]
 gi|229511674|ref|ZP_04401153.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae B33]
 gi|229518813|ref|ZP_04408256.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae RC9]
 gi|229607648|ref|YP_002878296.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae MJ-1236]
 gi|254848903|ref|ZP_05238253.1| cryptochrome DASH [Vibrio cholerae MO10]
 gi|255745421|ref|ZP_05419370.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholera CIRS 101]
 gi|262169806|ref|ZP_06037497.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae RC27]
 gi|81858080|sp|Q9KR33|CRYD_VIBCH RecName: Full=Cryptochrome DASH
 gi|9656339|gb|AAF94962.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549974|gb|EAX59992.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80]
 gi|126511605|gb|EAZ74199.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457]
 gi|126521339|gb|EAZ78562.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33]
 gi|146315923|gb|ABQ20462.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395]
 gi|227009831|gb|ACP06043.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
 gi|227013713|gb|ACP09923.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
 gi|229343502|gb|EEO08477.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae RC9]
 gi|229351639|gb|EEO16580.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae B33]
 gi|229355592|gb|EEO20513.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae BX 330286]
 gi|229370303|gb|ACQ60726.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae MJ-1236]
 gi|254844608|gb|EET23022.1| cryptochrome DASH [Vibrio cholerae MO10]
 gi|255737251|gb|EET92647.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholera CIRS 101]
 gi|262022040|gb|EEY40750.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae RC27]
          Length = 461

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 111/432 (25%), Positives = 180/432 (41%), Gaps = 23/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR       V+    S P+
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETISLSAPM 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
               +  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 171 GYPHVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 406

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 407 YDPKGEFVAKWC 418


>gi|153826234|ref|ZP_01978901.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2]
 gi|149739999|gb|EDM54174.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2]
          Length = 461

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 182/432 (42%), Gaps = 23/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR       V+    S P+
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 171 GYPRVLPPIEQGWQLPLLDIVTEPNHSAFVGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   +K+  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 289 YGAKLFRFSGIGE-KKLLTSFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G +     R FN   Q   
Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGANPRG-SRQFNLAKQAHT 406

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 407 YDPKGEFVAKWC 418


>gi|71297422|gb|AAH35161.1| CRY2 protein [Homo sapiens]
          Length = 461

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/380 (26%), Positives = 157/380 (41%), Gaps = 25/380 (6%)

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL---- 177
           ++   +  V   + +   L     I+    Q     Y  F+  + +  +      L    
Sbjct: 1   MKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQ 60

Query: 178 ---PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYV 231
                 A           +P   +  F  + + P  +  GE  AL  L K  + K +   
Sbjct: 61  QMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVAN 120

Query: 232 EQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            +R            + LSPYL  G LS R  + RL + +  +  +  +   S   +L+W
Sbjct: 121 YERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLW 179

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   G
Sbjct: 180 REFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEG 238

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           W+H+  R   A FL + DL V W  G   F   LLD D + N G W W  S G     +F
Sbjct: 239 WIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCGAFFQQFF 297

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPI 460
             + P   G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PI
Sbjct: 298 HCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPI 357

Query: 461 VDHKKACHHTLNQYYAAKKQ 480
           V+H +     + +     +Q
Sbjct: 358 VNHAETSRLNIERMKQIYQQ 377


>gi|254285235|ref|ZP_04960200.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226]
 gi|150424507|gb|EDN16443.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226]
          Length = 461

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 181/432 (41%), Gaps = 23/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR       V+    S P+
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 171 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQHYFSSMLPSRYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 406

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 407 YDPKGEFVAKWC 418


>gi|72012168|ref|XP_786331.1| PREDICTED: similar to cryptochrome [Strongylocentrotus purpuratus]
 gi|115937430|ref|XP_001183029.1| PREDICTED: similar to cryptochrome [Strongylocentrotus purpuratus]
          Length = 450

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 104/450 (23%), Positives = 172/450 (38%), Gaps = 39/450 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R+ LR+ DN AL             VFI   E          +  F++  L+ + +
Sbjct: 7   IHWFRHGLRLHDNPALLEGMTLGKEF-YPVFIFDNEVAGTKTSGYNRWRFLHDCLVDLDE 65

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L   G                      L+  V  L +    E     RD+ ++   +  
Sbjct: 66  QLKAAGGRLFVFHGDPCL----IFKEMFLEWGVRYLTFESDPEPIWTERDRRVKALCKEM 121

Query: 130 RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           +V C       L  P  I+  +       Y+ F + + +  +    R +P P +      
Sbjct: 122 KVECIERVSHTLWNPDIIIEKNGGTPPITYSMFMECVTE--IGHPPRPMPDPILTKVNMK 179

Query: 189 TPSNIPRFFDYPF-----------QAIDPMFPIGEQNALHILRKFCKEKVYYYV-----E 232
            PS+       P            +    ++  GE  AL + R     +   +       
Sbjct: 180 IPSDFEERCALPSLEVMGVNMECTEQEKKVWKGGETRALELFRVRILHEEEAFKGGYCLP 239

Query: 233 QRDIPAIQGTSQ-LSPYLSIGVLSPRQCWNRLKEEFVDLLIK---------PKSGAFSWL 282
            + +P + GT + LS YL  G LS R+ + ++ + + ++             +       
Sbjct: 240 NQYMPDLLGTPKSLSAYLRFGCLSVRRFYWKIHDTYSEVRSVSLFLVYRRLEEVSPSHLT 299

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            ++IWRE++  +          K   P    IEW +D   L+AW  G TG+P IDA M+Q
Sbjct: 300 AQVIWREYFYTMSVGNIHFNKMKE-NPICLNIEWKEDDEKLKAWTDGRTGYPWIDACMKQ 358

Query: 343 LNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           L   GW+H   R  TA FL + DL + W  G + F   LLD D +   G W W +S+  +
Sbjct: 359 LKYEGWIHQVGRHATACFLTRGDLWISWEDGLQVFDKYLLDADWSICAGNWMWISSSAFE 418

Query: 402 S-VPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
             +     F P   G+R DP G ++R ++P
Sbjct: 419 KFLQCPNCFCPVRYGRRMDPTGEYVR-FVP 447


>gi|318078311|ref|ZP_07985643.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actF]
          Length = 487

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 108/401 (26%), Positives = 185/401 (46%), Gaps = 19/401 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V   +DLR+ D+  L AA   ++ +V+ +F+  P   +    +A ++ F+   L 
Sbjct: 1   MKASIVLYTSDLRLHDHPPLRAAVREAE-EVVPLFVRDPGIKKVGFHAANRAAFLADCLG 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +   L ++G            D  + +          ++            R   L   
Sbjct: 60  DLDAGLRERGGRLVVR----AGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAA 115

Query: 127 LQHRVICKSFDDSVL--LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           L+         ++V+  LPPG ++  +   + V+TP+ +      ++  L +     + +
Sbjct: 116 LEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREPLGAP--RKLSV 173

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              V    +PR  D        +   GE+     L  + ++ +  Y +  D  A  GTS+
Sbjct: 174 PSKVRSDGVPRREDVE-GISPGLARGGEREGRAKLASWRRDGISRYEDLHDDLAGDGTSR 232

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSPYL  G LS  +C +R             +GA +++ +L WR+F+  ++A  P+    
Sbjct: 233 LSPYLHFGALSAAECVHR-------ARAAGGAGADAFVRQLCWRDFHHQVLAARPAAA-H 284

Query: 305 KPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
           + + P  +      D+     AW++G TG+P++DAAMRQL   GWMHNR R++ ASFL K
Sbjct: 285 EDYRPRGDHWRTGSDAEHEAAAWREGRTGYPVVDAAMRQLAHEGWMHNRGRLLAASFLTK 344

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            L +DWR+G  +F+  L+DGDL +N   WQW A TG D+ P
Sbjct: 345 TLYLDWRLGAAHFLDLLVDGDLVNNQMNWQWVAGTGTDTRP 385


>gi|167919769|ref|ZP_02506860.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BCC215]
          Length = 299

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
            +   +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+ 
Sbjct: 20  GLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHA 79

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             + +       ++    +L+EL WREF    +  +P +   +      + + W  D   
Sbjct: 80  AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 137

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L AW++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D
Sbjct: 138 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 197

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D ASN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH 
Sbjct: 198 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 257

Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P +            L   YPLPIV H  A    L+ + A +
Sbjct: 258 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 299


>gi|285816392|gb|ADC36879.1| Deoxyribodipyrimidine photolyase [Staphylococcus aureus 04-02981]
          Length = 457

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 134/479 (27%), Positives = 229/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N  L+   +     + A +   PE+      S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYHLEEYDILHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + YKV+T F +     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYRKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      + EQN     + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIVFGSS----QVIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANHEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKPKYRQIKWSQNEANFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|262147205|ref|ZP_06028009.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae INDRE 91/1]
 gi|262031362|gb|EEY49972.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae INDRE 91/1]
          Length = 461

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 181/432 (41%), Gaps = 23/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q   S  +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWSEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR       V+    S P+
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETISLSAPM 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
               +  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 171 GYPHVLPPIEQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPSRYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 406

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 407 YDPKGEFVAKWC 418


>gi|261211882|ref|ZP_05926169.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
           RC341]
 gi|260839232|gb|EEX65864.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
           RC341]
          Length = 461

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 110/432 (25%), Positives = 179/432 (41%), Gaps = 23/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAVAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR       V+    S P+
Sbjct: 117 IARIHQDFSSVHIHQQALRSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+             +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 171 GYPRVLPPIEQGWQLPLMGIVTEPNHSAFIGGEQAGLTHCQNYFSSMLPSRYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T  PI++A MRQLN  G+M NR R + 
Sbjct: 289 YGAKLFHFSGIGEKQPLT-SFYAQRFLQWKHGETPVPIVNACMRQLNQTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPR-DSRQFNLAKQAHT 406

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 407 YDPKGEFVAKWC 418


>gi|167903517|ref|ZP_02490722.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei NCTC
           13177]
          Length = 302

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
            +   +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+ 
Sbjct: 23  GLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHA 82

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             + +       ++    +L+EL WREF    +  +P +   +      + + W  D   
Sbjct: 83  AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 140

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L AW++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D
Sbjct: 141 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 200

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D ASN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH 
Sbjct: 201 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 260

Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P +            L   YPLPIV H  A    L+ + A +
Sbjct: 261 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 302


>gi|121705010|ref|XP_001270768.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
 gi|119398914|gb|EAW09342.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
          Length = 613

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/570 (19%), Positives = 194/570 (34%), Gaps = 103/570 (18%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
             V L W R DLR+ D+ AL+AA   + +  I ++   P    +  +   +  F+     
Sbjct: 2   KPVVLYWHRTDLRLHDSPALHAALALNPSIFIPIWTWDPHYVYRTRVGPNRWKFLLECQS 61

Query: 67  QVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
            +  + +           +    +     L     + ++T L + +  +     RD+ + 
Sbjct: 62  DLSAAYTTLNPKQRLWVVR----EAPQSVLPKLWKKWQITHLVFEQDTDAYARDRDEAVL 117

Query: 125 KRLQHRVICKSFD-DSVLLPPGSILNHALQMYKVYT------------------------ 159
           +  +   +         L  P  ++        +                          
Sbjct: 118 RMARDAGVEVIVQMGRTLFDPDELVRKNGGKPTMSIAQVQKAAEKIGDGTPAQPLEAPQS 177

Query: 160 -PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--------- 209
            P      +  +    + +      L  P   S+  ++        D   P         
Sbjct: 178 VPDPWKWEKMGLDGLGQDVVDARPDLNAPYRTSSDVQYSALMGPGRDFAVPTMEEIGIDG 237

Query: 210 --------IGEQNALHILRKFCKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSP 256
                    GE  AL +L  + ++  Y   + + +  PA    Q T+ LSP+L  G LS 
Sbjct: 238 SLARSPHRGGETAALRVLAGYIQDGEYVGTFEKPKTSPAAFEPQATTLLSPHLHFGSLSV 297

Query: 257 RQCWNRLKEEFVDLLIKPKSGA---FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           R+ W  ++        + K+ A    +   +L++R+ Y    A             +   
Sbjct: 298 RKFWWDVQGVLQQRRKQKKANASIPTNLPGQLLFRDMYFAAQAAIGHAFGQTLGNKYVRF 357

Query: 314 IEWN------------------------KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           I+W+                        +  +  + WK+G TGFP IDA MRQL   GW+
Sbjct: 358 IDWHLPTNYITTEEGKYQPDGTYTVDSSEAENWFRRWKEGRTGFPWIDALMRQLKLEGWI 417

Query: 350 HNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           H+  R   A FL +    V W  G E F   L+D + A N G WQW  S       Y+  
Sbjct: 418 HHLGRHSVACFLTRGGCYVSWERGAEVFEDWLVDHETACNVGNWQW-LSCTAFYSQYYHC 476

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN------------- 455
           ++P   GK++DP+G F+R + PEL N   +YI+ P      +                  
Sbjct: 477 YSPIAFGKKWDPEGEFVRRYCPELANFDKKYIYEPWKAPLPDQKKWGCRVTGDGSGSDDS 536

Query: 456 -------YPLPIVDHKKACHHTLNQYYAAK 478
                  YP P+ D  +     L+    A 
Sbjct: 537 KHEGLAVYPKPMFDFDERRRICLDGMKHAY 566


>gi|326799096|ref|YP_004316915.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
 gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
          Length = 434

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 110/433 (25%), Positives = 188/433 (43%), Gaps = 25/433 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYA 63
             LVW RNDLR+ DN+ L+ A   +D +V+ V++  P Q+       H     ++ FI  
Sbjct: 5   TILVWFRNDLRVRDNEILWQALAKAD-RVVPVYVFDPRQFTPLKNGMHKTGVIRAKFILE 63

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           S+  ++ SL   G               E L +   + +V +++++R+    E     L+
Sbjct: 64  SVQDLRLSLRSLGADLLVVSG----YPEEILPTLAERYQVKEVYHHREVAKEETHISTLV 119

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           E+ L + R+  + F    L     +      +   +  FRK + +          PV  I
Sbjct: 120 EEALWKKRLNLRHFIGHTLYHKEDLPFPIKDIPDAFATFRKKIERETTIRPSVETPV-KI 178

Query: 183 RLTGPVTPSNIPRFFDYPFQA------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            +   +  S IP      F A          F  GE   L  L           +     
Sbjct: 179 EVPDNLEASEIPSLASLGFSAGLIGIADQSPFKGGETEGLRRLETLLAGADTASLTG-SF 237

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            + +GT  LSP++++G LS    ++ +K+     L K ++ A   +  L+WR+++R +  
Sbjct: 238 GSEEGT-VLSPWIAMGCLSVHTVYHAVKKYEDKSLPKKQAAA--IITGLLWRDYFRFMFK 294

Query: 297 FYPS-VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            + +   + + F       E   D+ L   WK+G TG P +DAAM QLNTIG++ +  RM
Sbjct: 295 KHGNKFFLQQGFSNEIPAYELVGDA-LFDRWKRGETGDPFVDAAMHQLNTIGFISHTARM 353

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + A +LV +L +   +G  YF  +L+D + ASN G W   A  G+ +     I +     
Sbjct: 354 LVAHYLVSNLNISHLLGAAYFEDKLVDYNPASNYGNWAHIAGVGSSTKDNG-IRDIKKLQ 412

Query: 416 KRFDPQGTFIRHW 428
              D QG +++ W
Sbjct: 413 NLLDAQGEYVKRW 425


>gi|167895131|ref|ZP_02482533.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 7894]
          Length = 299

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
            +   +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+ 
Sbjct: 20  GLRDAWRFGEDAAHRRLRAFVDSRLGGYAVERDRPGIASTSRLSPYVRFGNLSARQLWHA 79

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             + +       ++    +L+EL WREF    +  +P +   +      + + W  D   
Sbjct: 80  AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 137

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L AW++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D
Sbjct: 138 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 197

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D ASN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH 
Sbjct: 198 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 257

Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P +            L   YPLPIV H  A    L+ + A +
Sbjct: 258 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 299


>gi|290997872|ref|XP_002681505.1| predicted protein [Naegleria gruberi]
 gi|284095129|gb|EFC48761.1| predicted protein [Naegleria gruberi]
          Length = 528

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 123/461 (26%), Positives = 202/461 (43%), Gaps = 43/461 (9%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGIS-----ARQSHFIYA 63
           +W RNDLRI DN+ALY A   +  +   ++ ++I    Q +                   
Sbjct: 34  IWFRNDLRIHDNEALYYAIKKAKKENKKLLPIYIFDKSQSQLPSPFSISKIPNSFTLFEQ 93

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +  +  +++  +  +    + S+       L    L  ++ K+F             K +
Sbjct: 94  NFEKEIENICNRNNINFIKKWSSTLIHKNDLPYTDLPNQIPKVFS---------AFRKKI 144

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPA 181
           EK +  + I         +    I     +   +       +     +    +  L    
Sbjct: 145 EKAIDEKDIE--------IECYEIEKEDYEELLLSEEEINKIHSQFSKNSNLITKLENVN 196

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             +   + P      FD   +        F  GE  AL   + + + K+  Y   R+   
Sbjct: 197 EFMKEYLYPDMEKTQFDNEIKYDQRSVVKFIGGEDKALKRCKFYIENKLKNYSTTRNGNI 256

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              +++LSP+L+ G +S R  +  +++   +   K KS A   ++EL+WR+FY++L    
Sbjct: 257 GDYSTKLSPWLANGCISSRYIYTEIQKNSNE---KSKSSANILVSELLWRDFYKYLAWKM 313

Query: 299 PS-VCMGKPFIPWTE-KIEWN-----KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            +     K   P  E   EW        +   Q W +G TG+P +DA MR+L   G+M+N
Sbjct: 314 GNSFFYEKALQPNKELDYEWEVPLNEYKNERFQQWCKGKTGYPFVDACMRELLNTGFMNN 373

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA-SNNGGWQWAASTGNDSVPYFRIFN 410
           R RM+ ASFL+KD+ +DWR+G EYF  QLLD   + SN G W W+A  G D  P  R FN
Sbjct: 374 RGRMVVASFLIKDMKIDWRMGAEYFERQLLDSTDSCSNYGNWAWSAGIGCDFRP--RYFN 431

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND 451
           P  QG   D  G FI+ W+ EL +VP++ IH P+  LD+++
Sbjct: 432 PIKQGLDHDKNGEFIKIWIHELASVPSKSIHLPYITLDEDE 472


>gi|262051762|ref|ZP_06023980.1| hypothetical protein SA930_1845 [Staphylococcus aureus 930918-3]
 gi|259160373|gb|EEW45399.1| hypothetical protein SA930_1845 [Staphylococcus aureus 930918-3]
          Length = 457

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 134/479 (27%), Positives = 227/479 (47%), Gaps = 31/479 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ ++ L    R+  N  L+   +     + A +   PE+      S  ++ F   +L 
Sbjct: 1   MAIAVL-LNRMFRMEHNP-LFEYIYQQKEDIDACYFIIPEE-DMSSASDLKAQFYRGTLQ 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +  +SL          + + +  S + + S+C +  ++++          +    +L +R
Sbjct: 58  RFYQSL-------HAEKLTPYVMSYDDIISFCKENNISEVVTAGDIMSYHLEEYDILHQR 110

Query: 127 L---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               + R+       +        +N   + Y V+T F K     L   D+    + +  
Sbjct: 111 SLFNEARIAVTLIRGNHYFKASKTMNQQGEPYNVFTSFYKKWRPYLRHRDVYHYDLKSFE 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                +P ++  F D  F +      I EQN     + F  + +  Y   RD      TS
Sbjct: 171 DFVIASPDDLV-FDDIAFGSS----QIIEQN---KWQHFLDQDIQNYESGRDYLPEVLTS 222

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G+L   + +N L   +     + ++   +++ ELI+REFY  LM  YP    
Sbjct: 223 QLSVALAYGLLDIIEIFNDLLARY----DEDEANYEAFIRELIFREFYYVLMTQYPETSY 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            + F P   +I+W+++     AW +G TGFPIIDAA+ +L   G+MHNR+RM+ + FL K
Sbjct: 279 -QAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTK 337

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DW  GE++F   L+D D ASN  GWQW+ASTG D+V YFR+FNP  Q +RFD +  
Sbjct: 338 DLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVLYFRMFNPIRQSERFDAKAL 397

Query: 424 FIRHWLPELNNVPTQYIH-----APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +I+ +LP  N +  +Y+H       + +    +L  +YP  +VDH++     L  + A 
Sbjct: 398 YIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGSHYPRQMVDHQEKRTQVLATFKAL 456


>gi|170878123|gb|ACB38886.1| putative 6-4 photolyase [Cercospora zeae-maydis]
          Length = 691

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 120/585 (20%), Positives = 195/585 (33%), Gaps = 113/585 (19%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
                + W R DLR+ D+ AL AA       +  ++        +  +   +  F+    
Sbjct: 2   GKPRVIYWFRTDLRLHDSPALKAALDLKPEVLYPIWCWDSHYVYRARVGVNRWQFLIDCQ 61

Query: 66  LQVQKSLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
             V +S+++          +    + ++  L       ++T L + +  +     RD+ +
Sbjct: 62  NDVSESITKLNQKSKLFVLR----EPAVTLLPKLFKAWKITHLVFEKDTDAYARERDEKV 117

Query: 124 EKRLQHRVICKSFD-DSVLLPPGSILNHALQ-------------------------MYKV 157
                   +         L  P  I+ +                               +
Sbjct: 118 MHMAGEAGVKVIVKVGRTLYDPDEIVKNNGGKPTMSITQLQHAGNKIGEIEEPVETPTSL 177

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIR----------LTGPVTPSNIPRFFDYPFQAIDPM 207
             P    L     + +         R          + GP    + P   +    A    
Sbjct: 178 PDPGEMKLEIEHTEPEAEPDINAKHREKDTVTFSSGIAGPKGDFSPPTLEELGMPAATSP 237

Query: 208 FPIGEQNALHILRKFCKEKVYY--YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNR 262
              GE   L  L +  K++ Y   + + +  PA    Q T   SPYL  G LS R  ++R
Sbjct: 238 HKGGESVVLERLEEMFKDEDYTGTFQKPKTSPAAFEPQSTFLTSPYLHFGALSCRYFYHR 297

Query: 263 LKEEFVDLLIKPK---SGAFSWLNELIWREFY---RHLMAFYPSVCMGKP---FIPWTEK 313
           + E       + K   S   S   +L++R+ Y   +  + +     +G     FIPW   
Sbjct: 298 VAEIVAKRNKEKKPTSSPPESLAGQLLFRDMYFAAQAALGWQFGQTLGNSHCRFIPWHLP 357

Query: 314 ----------------------------------IEWNKDSH---LLQAWKQGYTGFPII 336
                                               W         LQ W  G TGFP I
Sbjct: 358 SKVDMSSKRITGAHEIDSEETELWLQRWTHGITGFPWIDSEETELWLQRWTHGTTGFPWI 417

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           D  MRQL   GW+H+  R   A FL +    + W  G E F   L+D + A N G WQW 
Sbjct: 418 DVIMRQLRHEGWIHHLARHSVACFLTRGGCYISWERGLEVFEELLIDHESACNIGNWQW- 476

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKND 451
            S       ++R ++P   GK++D  G FIR ++PEL + P +YI+ PH        K  
Sbjct: 477 LSCTAFFAQFYRCYSPVAFGKKWDENGDFIRKFVPELAHFPKKYIYEPHKAPLADQKKAG 536

Query: 452 LSLN--------------YPLPIVDHKKACHHTLNQYYAAKKQSL 482
           + ++              YP P+ D  +     L    AA +  L
Sbjct: 537 VRVDGDGSETKGKDGLALYPKPMFDFNERREICLRGMKAAYRVGL 581


>gi|166007599|gb|ABY77633.1| At1g04400-like protein [Arabidopsis lyrata]
          Length = 450

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 95/333 (28%), Positives = 156/333 (46%), Gaps = 20/333 (6%)

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA---------IDPMFPIGEQNALHILR 220
           +++ +   P   + +T            +   +          +   +  G  NA  IL 
Sbjct: 1   IESVMLPPPWRLMPITAVAEAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILN 60

Query: 221 KFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKS 276
           +F ++++  Y +         TS LSPYL  G +S R  +   + +      D   + + 
Sbjct: 61  EFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEE 120

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
            A  +L  +  RE+ R++   +P     +  +       W+ D    +AW+QG TG+P++
Sbjct: 121 SADLFLRGIGLREYSRYICFNFP-FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLV 179

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DA MR+L   GWMHNR+R+I +SF VK LL+ W+ G +YF   LLD DL  +  GWQ+ +
Sbjct: 180 DAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYIS 239

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKN 450
            +  D     R+ NP +QG ++DP+G +IR WLPEL  +PT++IH P             
Sbjct: 240 GSIPDGHELDRLDNPALQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGV 299

Query: 451 DLSLNYPLPIVDHKKACHHTLNQYYAAKKQSLL 483
           +L  NY  PIVD   A           ++  ++
Sbjct: 300 ELGTNYAKPIVDIDTARELLAKAISRTREAQIM 332


>gi|126665353|ref|ZP_01736335.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
 gi|126629981|gb|EBA00597.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
          Length = 441

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 103/430 (23%), Positives = 185/430 (43%), Gaps = 23/430 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64
            L W   DLR+ DN AL AA  +    ++ V++  P  ++        +   +  F++ S
Sbjct: 3   TLYWFTRDLRLHDNAALLAASKSD--MLLCVYVVEPRWFKPGPLQCKTMGHHRWRFLWQS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L+ +++SL   G          + D    + +      ++++  +RQ    E  + + L+
Sbjct: 61  LIGLERSLRALGQRLHI----AWGDPETVIPALAHGHVISRIVRSRQPGTREAVQWQTLQ 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            +L  ++    ++   L     +      +   ++ FR  LI+         L +P +++
Sbjct: 117 DKLP-KIAFTQYETLGLFTESLLPMPLQDLPTTFSQFR-KLIEKKGDRGPSRLRIPTLKM 174

Query: 185 TGP---VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD-IPA 238
             P   +   N               F  GEQ  L  L+ F         Y E R+ +  
Sbjct: 175 LPPAPGLPDDNRGECPAIQEPTQPQAFRGGEQAGLARLQDFLAGTHAIDTYKETRNALDD 234

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
              +S+ SP+L+ G LS R+  + +     +         +    E++WRE++      +
Sbjct: 235 WNSSSKFSPWLAHGCLSAREVADSI--SLYEQQHTSNESTYWLWFEVLWREYFYWYALRH 292

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            S    +  +    +       H  +AW +G T +P+++AAM QL   G++ NR R + A
Sbjct: 293 GSELFRRDGVQGKRQ-SVTFYGHRFKAWCEGNTSYPLVNAAMNQLRETGYISNRSRQLVA 351

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S  + +L +DWR G  +F  QL+D D+ASN G WQ+ A  G D     R FN   Q +++
Sbjct: 352 SCFINELELDWRYGAAWFEQQLIDYDVASNYGNWQYLAGVGADPRGLRR-FNLDKQAQQY 410

Query: 419 DPQGTFIRHW 428
           DP GTF+  W
Sbjct: 411 DPNGTFVERW 420


>gi|224032111|gb|ACN35131.1| unknown [Zea mays]
          Length = 495

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 102/326 (31%), Positives = 157/326 (48%), Gaps = 16/326 (4%)

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCK 224
           Q L    L + P  A      +    +    D       +   +  G +NA ++L +F  
Sbjct: 9   QYLAPTRLVAAPGLANVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFVS 68

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS---- 280
             +  Y E         TS LSPYL  G LS R  +  +K   V    + KS A      
Sbjct: 69  YGLLEYSEHGMKVGGSTTSLLSPYLHFGELSVRMIYQLVKMRQVKWQNEGKSEAEESVRL 128

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           +L  + +RE+ R+L   YP     + F+   +   W  D    ++W+QG TG+P++DA M
Sbjct: 129 FLRSIGFREYSRYLCFNYP-FTHERSFLGNLKHYPWLLDEGRFKSWRQGMTGYPLVDAGM 187

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           R+L   GW HNR+R+I +SF VK L + W  G +YF   LLD DL S+  GWQ+ + +  
Sbjct: 188 RELWATGWTHNRIRVIVSSFAVKFLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLP 247

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL------DKNDLSL 454
           D     R+ NP +QG+++DP G ++R W+PEL  +PT++IH+P +           +L  
Sbjct: 248 DGHELSRLDNPEVQGQKYDPDGEYVRTWIPELARMPTEWIHSPWAAPNSILQVAGVELGF 307

Query: 455 NYPLPIVDHKKACH---HTLNQYYAA 477
           NYP PIV+   A       ++  +  
Sbjct: 308 NYPKPIVELHMARECLDDAISTMWQL 333


>gi|167816639|ref|ZP_02448319.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 91]
          Length = 291

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
            +   +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+ 
Sbjct: 12  GLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHA 71

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             + +       ++    +L+EL WREF    +  +P +   +      + + W  D   
Sbjct: 72  AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 129

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L AW++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D
Sbjct: 130 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 189

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D ASN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH 
Sbjct: 190 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 249

Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P +            L   YPLPIV H  A    L+ + A +
Sbjct: 250 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 291


>gi|258541536|ref|YP_003186969.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632614|dbj|BAH98589.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635671|dbj|BAI01640.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638726|dbj|BAI04688.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641780|dbj|BAI07735.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644835|dbj|BAI10783.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647890|dbj|BAI13831.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650943|dbj|BAI16877.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653934|dbj|BAI19861.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-12]
          Length = 309

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 114/278 (41%), Positives = 152/278 (54%), Gaps = 7/278 (2%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI-PAIQGTSQLSPYLSIGVLSPRQCWN 261
           A+   +  GE+ A   L +F +  +  Y  QRD   A  GTS LSPY+ +G +S RQ W+
Sbjct: 38  ALPSGWTSGEKAAHANLHRFIENALADYETQRDRADAPHGTSLLSPYIRVGQISVRQIWH 97

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            ++           + A  +L EL WR+F    M   P +   +      + + W  D+ 
Sbjct: 98  AIRHAEHQ-NPHLATPAEKFLAELGWRDFAWMQMFTTPDLAT-RNLRAEFDHMPWRADAA 155

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
            L AW+QG TGFP++DA MRQL   GWMHNR+RM+ ASFL K LL DWR GE +F +QLL
Sbjct: 156 DLAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRMVVASFLTKHLLTDWREGERWFYAQLL 215

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D A N   WQW A TG D+ P+FRIFNP  Q +++DP G +IR W+PEL  +  + IH
Sbjct: 216 DADAAVNAMNWQWGAGTGIDAAPWFRIFNPVGQSEKYDPAGQYIRTWVPELAALDNKTIH 275

Query: 442 APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            P     +    L YP PIVD K      L  +    K
Sbjct: 276 TPWKSTQR----LKYPAPIVDLKLGRLRALENWKNLPK 309


>gi|237654597|ref|YP_002890911.1| deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
 gi|237625844|gb|ACR02534.1| Deoxyribodipyrimidine photo-lyase [Thauera sp. MZ1T]
          Length = 526

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 100/501 (19%), Positives = 177/501 (35%), Gaps = 41/501 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS  LVW + DLR+        A       V+ V I  P  W Q   + +   F+  S  
Sbjct: 1   MSYGLVWFKRDLRLA--DHAALATAARRGPVLCVLIVEPSLWAQPDAARQHYEFMLESAR 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125
           ++   L++ G            +++  LD          L  + +        RD+ + +
Sbjct: 59  ELHAGLARVGGRLHLL----VGEAVAVLDRLHAAAPFDTLHSHEETGNAASYARDRAVAR 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             + R +              ++       +    +   +    V+       +  + L 
Sbjct: 115 WCRARGVRWHEPAQF-----GVVRRLDDRDRWQAAWEAQVAAPQVELP-EPSRLRFVALP 168

Query: 186 GPVTPSNIPRFFD--------------YPFQAIDP--MFPIGEQNALHILRKFCKEKVYY 229
             + P     + D                  A +P      G   AL +L  F   +   
Sbjct: 169 AALQPGAGATWPDRGAIAAVRAPAAVALGLDAFEPPRRQRGGRHAALEVLHDFLDARSGQ 228

Query: 230 YVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL--LIKPKSGAFSWLNEL 285
           Y      P  A    S+LSPYL+ G LS R+     +     L    + ++G  ++L+ L
Sbjct: 229 YRGGISSPLKAPTACSRLSPYLAWGCLSLRELVQATRARVAALPEGDRRRAGLAAFLSRL 288

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            W   +   +   P++        +    E   +     A   G TG+P++DA +  L  
Sbjct: 289 YWHCHFIQKLESEPTLEFRNLHRGYDGLREPEWNQAHFDALVGGRTGWPLVDACVAMLRA 348

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GW++ R+R +  S     L + WR    +     LD +   +    Q    +G   +  
Sbjct: 349 TGWLNFRMRAMLVSVAAYPLWLHWREVGLWLARAFLDYEPGIHWSQLQMQ--SGTTGINT 406

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLP 459
            R++NP  Q +  DPQG F+R WLP L  VP  ++  P    +         +  +  LP
Sbjct: 407 TRVYNPIKQARDHDPQGVFVRRWLPALRRVPDTWLFEPWRMPESVQARCGVRVGEDIALP 466

Query: 460 IVDHKKACHHTLNQYYAAKKQ 480
           +VD + A      + +A + Q
Sbjct: 467 VVDLESATRAAKTRIHALRAQ 487


>gi|315123107|ref|YP_004065113.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
 gi|315016867|gb|ADT70204.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
          Length = 436

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 110/425 (25%), Positives = 183/425 (43%), Gaps = 21/425 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65
           L WL+NDLRI DN  L         ++  VF+  P  +     +Q      +  F+  SL
Sbjct: 6   LYWLQNDLRIDDNPILNDLSQQ-QCELDIVFVINPAWFKSNNYQQKPYGVHKQRFLMQSL 64

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++Q+S+   G      +     D +  L     +  + ++ Y+ Q  + E R+   L+ 
Sbjct: 65  YELQESVLGLGQTLHILEG----DPVRVLTQRINELGIDEVVYSEQIGVYEQRQITALKS 120

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V+ KS     L     +      +   +TPFRK +    +   L S+P  A RL 
Sbjct: 121 KCA-TVVFKSVMQDTLYQQQQLPFELADLPTGFTPFRKKIEATGIS--LSSVPFSAKRLP 177

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRDIPAI-QGTS 243
            P+         + P    +P+   G +  L H L+ F       Y   R+       ++
Sbjct: 178 PPIILCAKQPISEPPTG--NPLLQGGHKAGLAHCLQYFSSALPSSYKITRNELGGFDNST 235

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           + S +L+ G +S +Q +  +  +  +         +    EL+WRE+++           
Sbjct: 236 KFSSWLAFGCISAKQIFCAV--DAYEAQHGENESTYWIKFELLWREYFKWHAINVKHQLF 293

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                  +  +      +    W QG T FP+++A M++LN  G++ NR R I AS LV 
Sbjct: 294 TFKGKKQSSPLT-TFSPNRFAKWCQGSTPFPLVNAIMKELNATGFITNRSRQIAASCLVN 352

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L +DWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   Q +++DP G 
Sbjct: 353 ELQLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRG-GRHFNLAKQTQQYDPHGE 411

Query: 424 FIRHW 428
           +I  W
Sbjct: 412 YIAKW 416


>gi|194378884|dbj|BAG57993.1| unnamed protein product [Homo sapiens]
          Length = 461

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 99/380 (26%), Positives = 156/380 (41%), Gaps = 25/380 (6%)

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSL---- 177
           ++   +  V   + +   L     I+    Q     Y  F+  + +  +      L    
Sbjct: 1   MKMAKEAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQ 60

Query: 178 ---PVPAIRLTGPVTPSNIPRFFDYPF--QAIDPM-FPIGEQNALHILRKFCKEKVYYYV 231
                 A           +P   +  F  + + P  +  GE  AL  L K  + K +   
Sbjct: 61  QMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVAN 120

Query: 232 EQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            +R            + LSPYL  G LS R  + RL + +  +  +  +   S   +L+W
Sbjct: 121 YERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLW 179

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   G
Sbjct: 180 REFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEG 238

Query: 348 WMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           W+H+  R   A FL + DL V W  G   F   LLD D + N G W W  S       +F
Sbjct: 239 WIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFF 297

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPI 460
             + P   G+R DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PI
Sbjct: 298 HCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPI 357

Query: 461 VDHKKACHHTLNQYYAAKKQ 480
           V+H +     + +     +Q
Sbjct: 358 VNHAETSRLNIERMKQIYQQ 377


>gi|157325494|gb|ABF59870.2| cryptochrome dash [Karenia brevis]
          Length = 512

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 110/466 (23%), Positives = 196/466 (42%), Gaps = 40/466 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW------RQHGIS 54
           M A  A +    W R DLR+ D  AL  AC ++   ++ +++  P ++           S
Sbjct: 1   MVAPAAGTARAFWFRTDLRLDDQPALSTACEDA-LSLLPIYVFDPAKFIDLTLAGARKSS 59

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           AR++ F+  SL+ +++ L  +G            D    +   C     + ++  +    
Sbjct: 60  ARRARFLIESLVNLRRRLEDRGSGLAV----AIGDPAVVIADLCA--SASAIYVTQGICS 113

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            E + +  +E +++   +        L  P     +  +   +++ F+K         + 
Sbjct: 114 EETQDEARVESKMKAPALLSRVWGGSLYFPDECGCNPTKAPLLFSNFKKKAEVFGKIREP 173

Query: 175 RSLPVPAIRLTGPVTPSN-------IPRFFDYPFQAIDP------------MFPIGEQNA 215
            +       L G V   +       +P   +  F++ +              F  GE  A
Sbjct: 174 LAELTKLPSLPGAVCEPDLSQALRFMPTLAELGFESEEINAAEFDDPRGVLPFSGGEDAA 233

Query: 216 LHILRKFCKEKVY--YYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
           L  L+K+  +  +   Y   R+    +G +S+ SP+L++G LSPR+ W  ++    + + 
Sbjct: 234 LTRLQKWIWDDDHLREYWMIRNGMKGEGYSSKFSPWLALGCLSPRRVWKEVQRYEKERV- 292

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
                 +  + EL+WR+F+ ++   +      K  I    K  W   +  L  WK G TG
Sbjct: 293 -KNKSTYWLVFELMWRDFFVYMALTHGDKLFRKGGITGDRKRSWPGSTTDLDRWKNGKTG 351

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
             ++DA M +L   GWM NR R   AS+L+ ++ VDWR G  +F   LLD D  SN G W
Sbjct: 352 DLLVDANMLELLATGWMSNRGRQNVASYLIFNMRVDWRYGAAHFEEHLLDYDPCSNWGNW 411

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
             AA      V     FN   Q  R+DP   +++HWL  L++  ++
Sbjct: 412 VAAAGLTGQRVNK---FNTLYQLDRYDPSREYVKHWLGNLDDQHSK 454


>gi|85711299|ref|ZP_01042358.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
 gi|85694800|gb|EAQ32739.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
          Length = 441

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 116/437 (26%), Positives = 179/437 (40%), Gaps = 19/437 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE----QWRQHGISAR 56
           M+A       LVW   DLR+ DN  L  A       V    I        ++  +GIS  
Sbjct: 1   MEAKH--QTGLVWFNLDLRLIDNLTLIRAAEQCQQLVCCFVIDESWFKGNRYGLNGISQP 58

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  +I  ++  +  SL Q G      +          + +      V  ++ +    + E
Sbjct: 59  RWRYIQQAIADLAASLQQHGQQLIIRKG----QPTTEISTLISTLEVDAVYCSDDPGVYE 114

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RR   L KR  + +  +   +  LL    +     ++   Y+ FRK      +     S
Sbjct: 115 RRRWDTLVKRFPY-ITFERVSNHTLLTERELDFPLEELPATYSAFRKRFE--PLAETFPS 171

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL-RKFCKEKVYYYVEQRD 235
               +     P  P         PF         GE  A   L + F      +Y E R+
Sbjct: 172 GQALSQLKALPPMPRRTIASEHTPFVEPSGYLQGGELAAHEHLTQYFKSSAPSHYKETRN 231

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            +     +++LS  L++G +SPRQ  + L+    +         +  + EL+WRE++   
Sbjct: 232 ALDNFADSTKLSAALALGNISPRQVIDALR--NYEATQGANESTYWIVFELMWREYFHWY 289

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +         I   +K   +  S    AW QG T +PI++A M QLN  G+M NR R
Sbjct: 290 LRRFQEKVFKFGGI-QDKKPTTSFYSQRFAAWCQGKTPYPIVNACMHQLNQTGYMSNRGR 348

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            + AS L+ +L +DWR G  YF  QL+D D+ASN G WQ+ A  G D     R FN   Q
Sbjct: 349 QLVASCLIHELQLDWRYGAAYFEQQLIDYDVASNWGNWQYLAGVGADPRGSRR-FNLDKQ 407

Query: 415 GKRFDPQGTFIRHWLPE 431
            + +DP G FI+ W  E
Sbjct: 408 TQTYDPNGEFIKRWHGE 424


>gi|167846551|ref|ZP_02472059.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei B7210]
          Length = 289

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
            +   +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+ 
Sbjct: 10  GLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHA 69

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             + +       ++    +L+EL WREF    +  +P +   +      + + W  D   
Sbjct: 70  AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 127

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L AW++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D
Sbjct: 128 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 187

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D ASN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH 
Sbjct: 188 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 247

Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P +            L   YPLPIV H  A    L+ + A +
Sbjct: 248 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 289


>gi|40063354|gb|AAR38165.1| deoxyribodipyrimidine photolyase family protein [uncultured marine
           bacterium 580]
          Length = 478

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 104/485 (21%), Positives = 189/485 (38%), Gaps = 34/485 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
             ++VWL+ DLR+TD+  LY A    D + + ++I  P          R   FI  SL  
Sbjct: 4   KTNIVWLKRDLRLTDHAPLYEAT-CRDEQFLVLYIYEPSLINDSHTDERHWRFIQQSLSV 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126
           ++K L+++           + ++ +       Q  +T +F + +  +     RDK L+K 
Sbjct: 63  MEKILAKQSKQLSI----AYGEADQIFSEIINQHEITNVFSHEETGLKLTYERDKKLKKI 118

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
               ++    +  +      +++            + K + + +   +L    + +    
Sbjct: 119 FNAKKIQWHEYQTN------AVIRGLNNRKTWEKQWNKVMREEIKTINLAEANIISHNFP 172

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS-- 243
               P                  P G       +  F + +   Y +    P    TS  
Sbjct: 173 NYSIPKFRNDLN---------YQPGGCLPGQKEMHDFFETRGQDYFKFISKPDRSRTSCS 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           +LSPY++ G LS R+ +  L + +     +    A S  + L W   +         +  
Sbjct: 224 RLSPYIAYGNLSMREVYQTLLKSWNKTGWRRSMAALS--SRLHWHCHFIQKYESEIDI-E 280

Query: 304 GKPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             P     +   +   N +     AW  G TG+P+IDA+MR L   G+++ R+R +  SF
Sbjct: 281 DLPINRGYKDFPYKVINCEHEDFLAWANGETGYPLIDASMRALKKTGYLNFRMRAMVVSF 340

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
                ++ W++  ++  +  LD +   +    Q     G   +   RI+NP+ Q +  DP
Sbjct: 341 ACHYFMIHWKLVAKHLATLFLDFEPGIHYPQIQMQ--AGVTGINTIRIYNPSKQLQDHDP 398

Query: 421 QGTFIRHWLPELNNVPTQYIHA-PHSWLDKNDLSLN-YPLPIVDHKKACHHTLNQYYAAK 478
              FIR W+ EL++   +YI   P    D    S N YP P  D  +   +  N  +  K
Sbjct: 399 DTKFIRDWIDELSDQDKEYILGLPDDNFDLFSNSQNFYPTPAYDFFERTKYAKNLLWQWK 458

Query: 479 KQSLL 483
           K SL+
Sbjct: 459 KSSLV 463


>gi|172058092|ref|YP_001814552.1| DASH family cryptochrome [Exiguobacterium sibiricum 255-15]
 gi|171990613|gb|ACB61535.1| cryptochrome, DASH family [Exiguobacterium sibiricum 255-15]
          Length = 400

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 123/419 (29%), Positives = 194/419 (46%), Gaps = 29/419 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLR+ D++AL  AC   +  V AVF+    +    G   +Q  F   +L  + 
Sbjct: 3   GVVWYRKDLRVDDHEALTRACEE-EKIVRAVFV----RQTADGRGKQQMTFEEETLQSLN 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L Q GI     Q       +E L S+   + V  ++++R     E R+++ ++KR   
Sbjct: 58  EHLVQLGIELTILQGET----VEQLTSFIQPEDV--VYFHRMTGEYEARQEQEVQKRFNT 111

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
           R+    ++   L     I   + ++ +V+T FRK + Q+   A+    P     +  P T
Sbjct: 112 RM----YETQTLHLRDDI--GSDELKRVFTAFRKRVEQDGRFAEPIEAPGNIQYIELPQT 165

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
                    +P       F  GE    + L  + ++ ++ Y E R+   +  +S+LS +L
Sbjct: 166 RGGYDPRTAFP-------FIGGEAAGRNRLAAYLEQPIFTYKETRNGFNVDDSSKLSAWL 218

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           + G LSPR+    L+    +         +    EL+WR+F+   M            + 
Sbjct: 219 ANGSLSPRRVMAELQRTEQE--HGANESTYWLYFELLWRDFFHLTMRETGHRLFRSNGLK 276

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
               + W  D   + +W  G TG P +DA MR++   GWM NR R ITAS+L+ DL  DW
Sbjct: 277 DGR-LTWKTDQAAIDSWMAGETGEPFVDAFMREIKDTGWMSNRGRQITASYLIHDLKQDW 335

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           RIG  YF  QL+D D+ASN G W + A  GN +      FNP  Q +++DP   FIR W
Sbjct: 336 RIGARYFEQQLIDYDVASNYGNWAYIAGVGNATRTPR--FNPEFQQQKYDPNRAFIRRW 392


>gi|167911767|ref|ZP_02498858.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 112]
          Length = 288

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
            +   +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+ 
Sbjct: 9   GLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHA 68

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             + +       ++    +L+EL WREF    +  +P +   +      + + W  D   
Sbjct: 69  AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 126

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L AW++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D
Sbjct: 127 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 186

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D ASN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH 
Sbjct: 187 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 246

Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P +            L   YPLPIV H  A    L+ + A +
Sbjct: 247 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 288


>gi|300778230|ref|ZP_07088088.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
           ATCC 35910]
 gi|300503740|gb|EFK34880.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
           ATCC 35910]
          Length = 432

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 111/440 (25%), Positives = 188/440 (42%), Gaps = 25/440 (5%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QS 58
                ++++W   DLR  D+++LY      D   +AVF+   + + Q     R     ++
Sbjct: 2   PKKQKINILWFTKDLRTRDSESLYNIMQE-DLPFLAVFVFDSDLFAQKQFGFRKIGKYRA 60

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  S+  +++ L++K I     Q    +      +    +  + K+F  +++   E  
Sbjct: 61  RFLLESIEDLKQRLAKKNIPLLVRQNKTEN----VFEEIAKEFEIVKIFCQQEWTKEETD 116

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
               + K + +    KS+    LL P  +     ++  ++T FR  + +NL+        
Sbjct: 117 LQTKIRKTVPYAFWEKSY-SQFLLHPFFVCKVLDKIPDLFTTFRNKIEKNLLIRPEFETE 175

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPIGEQNALHILRKFCKEKVY--YY 230
                 +     S+        F+  D        FP GE   L  L  +  E  +   Y
Sbjct: 176 QLICYKSEIHFESDKITLRSLGFEDFDTDARSAFPFPGGETEGLRRLHSYFPETQHLSRY 235

Query: 231 VEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            E R+ +   + +S+ SP+LS G LS    ++ +K    +         +    EL+WR+
Sbjct: 236 KETRNGLVGTEYSSKFSPWLSCGSLSAVTIYHEIKR--FEKKFGSNESTYWLFFELLWRD 293

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F+R++   +  +   K  I    +   +    L++ WK G T    ++A M +L   GWM
Sbjct: 294 FFRYVSLQHKDLIFRKKGITH-RQYSASHHQELIRKWKNGETTSDFVNANMIELQKTGWM 352

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            NR R   AS+  K L  DWRIG  YF   L+D D+ SN G W + A  GNDS    R F
Sbjct: 353 SNRGRQNAASYFCKTLNQDWRIGAAYFEEMLIDYDVHSNYGNWMYLAGVGNDSRN--RTF 410

Query: 410 NPTIQGKRFDPQGTFIRHWL 429
           NP  Q + +DP+  F R WL
Sbjct: 411 NPERQAELYDPKQEFRRLWL 430


>gi|254468896|ref|ZP_05082302.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
 gi|207087706|gb|EDZ64989.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium KB13]
          Length = 477

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 96/480 (20%), Positives = 184/480 (38%), Gaps = 31/480 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            +++VWL+ DLR+ D++ LY A    +   I ++I  P          R   FI  SL  
Sbjct: 4   KINIVWLKRDLRLQDHEPLYRA-QEENIPFILLYIYEPSLILDPHYDKRHWRFIQESLED 62

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEKR 126
           +Q  L++            + +S++  +    +  +  +F + +  +N    RDK +   
Sbjct: 63  IQLELAKNQNKLSI----AYGESVDIFNELSNRYDIQYVFSHEETGLNTTFERDKNVANF 118

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
            + + I      S       ++            + + +    ++ + + L +  I    
Sbjct: 119 FKRQNITWIESQS-----NGVIRGLQDRKTWDKAWARFMRDKTIKINPQKLNIIDIDFGE 173

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQ 244
              PS         F+        G   A   L  F   +   Y +    P  +    S+
Sbjct: 174 INIPS---------FEEDSNFQKGGMVEAQTTLEDFFSTRGQDYYKFISKPHKSRSSCSR 224

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +S Y++ G +S RQ + ++ E +  +  +    A S  + + W   +         +   
Sbjct: 225 MSAYIAYGNISIRQIYQKILENWNRVGWRRSMAALS--SRIHWHCHFIQKFESECRI-EN 281

Query: 305 KPFIPWTEKIEW---NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           +      +   +   +++     +W  G TGFP+IDA+MR L   G+++ R R +  SF 
Sbjct: 282 ETINKGYQNFPYLVEDEEHADFTSWLNGMTGFPLIDASMRALRYSGYINFRSRAMVVSFA 341

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
              L + W++  +      LD +   +    Q     G   +   RI+NP  Q    DP+
Sbjct: 342 CHYLRIHWKLVAKALARLFLDFEPGIHYPQIQMQ--AGVTGINTIRIYNPKKQAMDHDPE 399

Query: 422 GTFIRHWLPELN-NVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             FI+ W+PELN + P   I+ P    D      NYP    + ++    + +  +  KK 
Sbjct: 400 AIFIKTWIPELNSHQPEYIINLPLQSNDLFSNESNYPQAQYNFQERIRESKDLLWQWKKS 459


>gi|229529162|ref|ZP_04418552.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae 12129(1)]
 gi|229332936|gb|EEN98422.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae 12129(1)]
          Length = 461

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 181/432 (41%), Gaps = 23/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR       V+    S P+
Sbjct: 117 IARIHQDFSCVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 171 GYPRVLPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSMLPSCYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLMDYDVGSNWGNWQYLAGVGADPRGSRR-FNLEKQAHT 406

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 407 YDPEGEFVAKWC 418


>gi|167739436|ref|ZP_02412210.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 14]
          Length = 280

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 8/282 (2%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
            +   +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+ 
Sbjct: 1   GLRDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHA 60

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             + +       ++    +L+EL WREF    +  +P +   +      + + W  D   
Sbjct: 61  AADAYAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAA 118

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L AW++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D
Sbjct: 119 LAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVD 178

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D ASN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH 
Sbjct: 179 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHE 238

Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P +            L   YPLPIV H  A    L+ + A +
Sbjct: 239 PWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 280


>gi|229523842|ref|ZP_04413247.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae bv. albensis VL426]
 gi|229337423|gb|EEO02440.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae bv. albensis VL426]
          Length = 461

 Score =  262 bits (670), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 113/432 (26%), Positives = 182/432 (42%), Gaps = 23/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q   S  +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWSEAKKW 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+  +L  +  SLS  G          +    + L     Q  +T ++ +     +E + 
Sbjct: 61  FLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVDAMAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR       V+    S P+
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 171 GYPRVLPPIEQGWQLPLMDIVTEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGVTPFPIVNACMRQLNQTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLAKQTHT 406

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 407 YDPKGEFVAKWC 418


>gi|167619333|ref|ZP_02387964.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4]
          Length = 311

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 112/281 (39%), Positives = 151/281 (53%), Gaps = 8/281 (2%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
            +   +  GE  A  +LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W  
Sbjct: 32  GLRDAWRFGEDAAHSLLRAFVDSRLGGYATERDRPGIASTSRLSPYVRFGNLSVRQIWQA 91

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             +         ++    +L+EL WREF    +  +P +   +      + + W  D   
Sbjct: 92  AVDAHAH-RAATQADLDKFLSELGWREFCWAQLYRFPDLPR-RNLRHTLDGMPWRDDPAG 149

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L AW++G TG+P +DA MR+L   GWMHNR RM+ ASFLVK LL+DWR GE +F   L+D
Sbjct: 150 LAAWRRGATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREGEAWFWDTLVD 209

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D ASN   WQW A  G D+ PYFRIFNP  QGK+FDP G ++R W+PEL  +P   IH 
Sbjct: 210 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGKKFDPDGAYVRRWVPELAGLPPAAIHE 269

Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477
           P +            L   YP+P+V H  A    L+ +  A
Sbjct: 270 PWAAPPAQLAAAGVRLGDTYPVPVVAHDAARRRALDAFATA 310


>gi|310816072|ref|YP_003964036.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25]
 gi|308754807|gb|ADO42736.1| deoxyribodipyrimidine photolyase [Ketogulonicigenium vulgare Y25]
          Length = 478

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 136/487 (27%), Positives = 202/487 (41%), Gaps = 40/487 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  L WL  D R  DN AL AAC  +D  ++AVF        Q    A     +  +L  
Sbjct: 3   APGLFWLSRDFRFADNPALAAAC--TDGPLLAVFCVDDLLMSQ---GAASRWRLEQALRA 57

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR--RDKLLEK 125
              +L ++             D I  L +        ++     +    +R  +D+L   
Sbjct: 58  FDAALRKRTGGRGVLVLRGEPDRI--LPALVQNTGAQRIH-QSDWPTAGMRAVQDRLRAA 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                   +     +L  P  + + A   Y+VYTPF +AL Q+      R  P       
Sbjct: 115 LAPLGAGLELHGGHLLAHPAMLRSGAGTPYRVYTPFARALRQHGADRPGRDAPARITPCA 174

Query: 186 GPVTPSNIPRFFDYP------FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                  I      P              P G Q A   L  F  +    Y   RD P  
Sbjct: 175 DDHQGLAIETLDLAPDMHRGRALLAKFALPAGAQQAEARLDTFLDQA-AVYPAGRDHPDQ 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             TS LS +L++G +SPR+ W  +             G   +L+E+IWREF  HL+   P
Sbjct: 234 PATSNLSEHLALGEISPRRIW-AIASLRAAAEPALAPGITKFLSEVIWREFSWHLLIANP 292

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +   +P+     +  W + +  L  W+Q  TG  ++DA +R++   G MHNR+RM+ AS
Sbjct: 293 DLPT-QPWRQEWSEFPWQQRTSALSRWEQAATGISLVDAGLREMRVTGRMHNRVRMVVAS 351

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           +L K ++ DWR+G ++F   L D D A+N   WQW A  G D+ PYFRIFNP  Q + FD
Sbjct: 352 WLTKHMMTDWRLGLQHFADSLTDWDPAANAMNWQWVAGCGPDASPYFRIFNPVKQAEEFD 411

Query: 420 PQGTFIRHWL--------PE----LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKAC 467
            +G + R WL        PE     +++PT +  A H   D +D  L         +   
Sbjct: 412 KKGIYRRKWLAGFDGSAAPEAIAYHDSLPTDWHVARHWREDASDERL---------RGGR 462

Query: 468 HHTLNQY 474
              L+ Y
Sbjct: 463 EAALDAY 469


>gi|302745156|gb|ADL62681.1| criptochrome 2a [Phreatichthys andruzzii]
          Length = 488

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 194 PRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLS 246
           P   +  F        ++P GE  AL  + +  + K +    +R            + LS
Sbjct: 45  PSLEELGFDIEGLPSAVWPGGETEALTRIERHLERKAWVANFERPRMNANSLLASPTGLS 104

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  G LS R  + +L + +  +  K  +   S   +L+WREF+       P     + 
Sbjct: 105 PYLRFGCLSCRLFYFKLTDLYRKVK-KTNTPPLSLYGQLLWREFFYTAATSNPRFDKMEG 163

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DL 365
             P   +I W+K+   L  W +  TGFP IDA M QL   GW+H+  R   A FL + DL
Sbjct: 164 -NPICVRIPWDKNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDL 222

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            + W  G + F   LLD D + N G W W  S  +    +F  + P   G+R DP G FI
Sbjct: 223 WISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDFI 281

Query: 426 RHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           R +LP L   P +YI+ P +  D      K  + ++YP P+V+H +A    + +     +
Sbjct: 282 RRYLPILRGFPAKYIYDPWNAPDSVQAAAKCIIGVHYPKPMVNHAEASRLNIERMKQIYQ 341

Query: 480 Q 480
           Q
Sbjct: 342 Q 342


>gi|167581248|ref|ZP_02374122.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH]
          Length = 311

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 112/281 (39%), Positives = 152/281 (54%), Gaps = 8/281 (2%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
            +   +  GE  A  +LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+ 
Sbjct: 32  GLRDAWRFGEDAAHSLLRAFVDSRLGGYATERDRPGIASTSRLSPYVRFGNLSVRQIWHA 91

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             +         ++    +L+EL WREF    +  +P +   +      + + W  D   
Sbjct: 92  AVDAHAH-RAATQADLDKFLSELGWREFCWAQLYRFPDLPR-RNLRHTLDGMPWRDDPAG 149

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L AW++G TG+P +DA MR+L   GWMHNR RM+ ASFLVK LL+DWR GE +F   L+D
Sbjct: 150 LAAWRRGATGYPFVDAGMRELWATGWMHNRARMVCASFLVKHLLIDWREGEAWFWDTLVD 209

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D ASN   WQW A  G D+ PYFRIFNP  QGK+FDP G ++R W+PEL  +P   IH 
Sbjct: 210 ADAASNAANWQWVAGCGADAAPYFRIFNPVAQGKKFDPDGAYVRRWVPELAGLPPAAIHE 269

Query: 443 PHSWLDKN------DLSLNYPLPIVDHKKACHHTLNQYYAA 477
           P +            L   YP+P+V H  A    L+ +  A
Sbjct: 270 PWAAPPAQLAAAGVRLGDTYPVPVVAHDAARRRALDAFATA 310


>gi|83642974|ref|YP_431409.1| deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
 gi|83631017|gb|ABC26984.1| Deoxyribodipyrimidine photolyase [Hahella chejuensis KCTC 2396]
          Length = 491

 Score =  261 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 117/490 (23%), Positives = 196/490 (40%), Gaps = 32/490 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+V +VW + DLR+TD+  LY A       V  +++A PE W Q     R+  F+  +L 
Sbjct: 1   MTVRVVWFKRDLRVTDHGPLYHAAR--QGPVAPLYVAEPEYWAQPDAGERRWGFVRETLQ 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125
           ++ ++LS+ G    +      D  I  L+    +  V +L+ +++  +    RR++++ +
Sbjct: 59  ELDQTLSKLGQPLWFMH----DSMINVLEYLKDRFGVFELYSHQETGVQWCNRRNQIVRE 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +   +          P   +L  A    +    ++  + Q    +      +    L 
Sbjct: 115 WCRRNGVLWREW-----PVCGVLRRATAAERWQAAWKDFMAQTRYPSPKSLPMLGTSPLK 169

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI--QGTS 243
               P  I                   Q     L+ F + +   Y      PA   +G S
Sbjct: 170 PEAWPETIGADPTPCVLRQAGGRAAAAQE----LKSFLQTRGINYFRDTHYPATSFEGGS 225

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMAFYP 299
           +LSPYLS GV+S R+   + +           +        +L+ L  R  Y   M   P
Sbjct: 226 RLSPYLSHGVISLREAVQQSRRALQIYHTHRSADWVKSMTEFLSRLYLRSHYMQQMEDEP 285

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +        +    E   D    +AWK G TGFP+IDAAM+ L   GW++ +LR +  S
Sbjct: 286 GMESINLHKSFNGLREHQFDEAKFEAWKNGETGFPLIDAAMKALINYGWINYQLRGLLMS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNG-GWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           F    L + WR    +      D D A +     Q+A +TG       +I+NP  +  R 
Sbjct: 346 FAANQLWLHWREPALHMARLSTDYDPAVHFPLTQQFAGTTGMFEQ---KIYNPVTESHRL 402

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLN 472
           DP G FIR     L  V   Y+HAP        +        +YP+PI++++ A      
Sbjct: 403 DPAGKFIRAECSALREVSDAYLHAPWKMPHAEQIMSGCVLGQDYPMPIINNEDASLIAGQ 462

Query: 473 QYYAAKKQSL 482
           +  A  ++ L
Sbjct: 463 RLKAHLEERL 472


>gi|167825044|ref|ZP_02456515.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 9]
          Length = 279

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 113/278 (40%), Positives = 153/278 (55%), Gaps = 8/278 (2%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
            +  GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + 
Sbjct: 4   AWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADA 63

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
           +       ++    +L+EL WREF    +  +P +   +      + + W  D   L AW
Sbjct: 64  YAHGAAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAW 121

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           ++G TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D A
Sbjct: 122 RRGATGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAA 181

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SN   WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P + 
Sbjct: 182 SNAANWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAA 241

Query: 447 LDKN------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
                      L   YPLPIV H  A    L+ + A +
Sbjct: 242 PGAQLAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 279


>gi|167720442|ref|ZP_02403678.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei DM98]
          Length = 272

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 113/274 (41%), Positives = 152/274 (55%), Gaps = 8/274 (2%)

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           GE  A   LR F   ++  Y  +RD P I  TS+LSPY+  G LS RQ W+   + +   
Sbjct: 1   GEDAAHRRLRAFVDSRLGGYAAERDRPGIASTSRLSPYVRFGNLSARQLWHAAADAYAHG 60

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
               ++    +L+EL WREF    +  +P +   +      + + W  D   L AW++G 
Sbjct: 61  AAT-QADLDKFLSELGWREFGWTQLHHFPDLPR-RNLRHTLDGMPWRDDPAALAAWRRGA 118

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG+P +DA MR+L   GWMHNR+RM+ ASFLVK LL+DWR GE +F   L+D D ASN  
Sbjct: 119 TGYPFVDAGMRELWATGWMHNRVRMVCASFLVKHLLIDWRAGEAWFWDTLVDADAASNAA 178

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
            WQW A  G D+ PYFRIFNP  QG++FDP G ++R W+PEL  +P   IH P +     
Sbjct: 179 NWQWVAGCGADAAPYFRIFNPVAQGRKFDPDGAYVRRWVPELAGLPPATIHEPWAAPGAQ 238

Query: 451 ------DLSLNYPLPIVDHKKACHHTLNQYYAAK 478
                  L   YPLPIV H  A    L+ + A +
Sbjct: 239 LAAAGVRLGETYPLPIVAHDAARRRALDAFGAIR 272


>gi|229520286|ref|ZP_04409712.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae TM 11079-80]
 gi|229342652|gb|EEO07644.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           cholerae TM 11079-80]
          Length = 461

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/432 (25%), Positives = 179/432 (41%), Gaps = 23/432 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
           +  + L W  NDLR+ DN  L  A    D ++I ++     TP      +Q      +  
Sbjct: 2   SKKIGLYWFTNDLRVNDNPLLEQASQQVD-RLICLYCYPSITPFLARYAQQTQWGEAKKR 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
            +  +L  +  SLS  G          +    + L     Q  +T ++       +E + 
Sbjct: 61  VLNQTLADLDHSLSTLGQKLWVTPLLPY----QALRHLLTQVEITDIYVEAMAGSDERQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +      I +    S+L  P  +      +   +T FR       V+    S P+
Sbjct: 117 IARIHQDFSSVHIHQQALHSLLSEP-QLPFALEALPSTFTQFR-----KQVETLSLSAPM 170

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              R+  P+         D   +     F  GEQ  L H    F       Y E R+ + 
Sbjct: 171 GYPRVLPPIEQGWQLPLLDIVAEPNHSAFIGGEQAGLTHCQNYFSSLLPSRYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SP+  +  L+    + +       +    EL+WRE++      
Sbjct: 231 GMDYSTKFSPWLALGAVSPKTIYAMLQRY--EAVHGANDSTYWIFFELLWREYFYWYARR 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y +       I   + +  +  +     WK G T FPI++A MRQLN  G+M NR R + 
Sbjct: 289 YGAKLFRFSGIGEKKPLT-SFYAQRFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           A+ LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q   
Sbjct: 348 ATCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHT 406

Query: 418 FDPQGTFIRHWL 429
           +DP+G F+  W 
Sbjct: 407 YDPKGEFVAKWC 418


>gi|89075135|ref|ZP_01161571.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
 gi|89049089|gb|EAR54655.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
          Length = 443

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 113/426 (26%), Positives = 186/426 (43%), Gaps = 17/426 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP--EQWRQH---GISARQSHFIYAS 64
            L W  NDLR+ DN  L+ A  + D+ ++ V+   P  +Q+ ++    +   +  F+  +
Sbjct: 5   ALYWFTNDLRLHDNPILHQAYEHCDS-LLCVYFMEPKKQQFNRYQLISVGEIRHRFLLQA 63

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +Q +L+  G      Q                Q  +  ++ +R     E ++   L+
Sbjct: 64  LQALQSNLATLGQRLLVMQADPMVSM----PVLIEQYGINLIYRSRHCGWYEQQQWCYLK 119

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +   H +     D   L     +    L M K Y+ FRK + QN+  +    +P      
Sbjct: 120 QCYPH-LRFVEVDTHTLYSQDQLPFPLLDMPKSYSKFRKQIEQNVTVSSPILVPDYLPPQ 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRDIP-AIQGT 242
                   +     +        +  GE  AL H+ + F       Y E R+       +
Sbjct: 179 PNVFCSEYLDIRHVHISDNDQVEWHGGENAALMHLQQYFSSRLPSSYKETRNAIEGWNNS 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++ SP+L+ G +S +    RL++   +   +  S  +    EL+WREF+    A      
Sbjct: 239 TKFSPWLACGAISAKMIMARLQDY--EKYKEKNSSTYWIFFELLWREFF-QWHAHAVGRD 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           + +      +++  +      + W +G T +PI++A M+QLN  G+M NR R I AS LV
Sbjct: 296 LYRFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLNQTGYMSNRGRQIVASCLV 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L VDWR G  YF  QL+D D+A+N G WQ+ A  G DS    R F+   Q + FDP  
Sbjct: 356 NELSVDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSREK-RWFDLEKQTRIFDPNH 414

Query: 423 TFIRHW 428
            FIRHW
Sbjct: 415 HFIRHW 420


>gi|119476543|ref|ZP_01616894.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2143]
 gi|119450407|gb|EAW31642.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2143]
          Length = 444

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 106/447 (23%), Positives = 177/447 (39%), Gaps = 22/447 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIY 62
            V L W  +DLRI DN  L  A    D  +I ++ A      P   +   +S R+  F++
Sbjct: 3   KVGLFWFNHDLRIDDNATLLRAAAEVDT-LICLYCADTAKTGPGSRQPAELSLRRREFLF 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  ++  L++ G              +E +        V+ ++ +      E     +
Sbjct: 62  ESLQDLEAQLNRHGQKLVVR----IQPPLEAIAQLITVHNVSHIYRSNHVGSYENTIWTI 117

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-----LVQADLRSL 177
           L KR    +         L  P  +     Q+   ++ FR+ + +      + +      
Sbjct: 118 LRKRYGM-LTFTQCHTHTLFEPSQLPFAIDQLPSSFSKFRRVVEKMDINSGIAEPLPTPT 176

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQRD- 235
            +P   L   +        +         +F  G       L   F   +   Y   R+ 
Sbjct: 177 SLPKPALVADLAWQKRWHEYFTQSSDSPALFRGGASAGRRHLENYFGSRRASDYKATRNG 236

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +  +  +++ SP+L+ G LS R    +L+    +         +  L EL+WRE+++   
Sbjct: 237 LDGMDYSTKFSPWLANGSLSTRHIVRQLQ--GYEERAGANDSTYWILFELLWREYFQWYG 294

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             Y         I  +  I  +      + W  G T + II+A MRQLN  G++ NR R 
Sbjct: 295 HKYQQRLFTFSGIGNSTPIT-SFYPERFKKWCVGNTPYAIINACMRQLNATGYLSNRGRQ 353

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           + AS  V +L +DWR G  YF  QL+D D+ASN G WQ+ A  G D   + R F+   Q 
Sbjct: 354 LAASCFVHELGLDWRHGATYFEQQLVDYDVASNWGNWQYLAGVGADPRGH-RHFDLQKQA 412

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHA 442
           + +DP   F+  W  E +  P   + A
Sbjct: 413 QIYDPDNHFVHRWAGEDSLQPLDSVDA 439


>gi|269961334|ref|ZP_06175699.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833885|gb|EEZ87979.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 462

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 108/430 (25%), Positives = 177/430 (41%), Gaps = 23/430 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATP------EQWRQHGISARQSHF 60
            ++ L W  NDLR+ DN  L  A    D  +I ++          +  ++      +  F
Sbjct: 15  KTIGLYWFTNDLRLHDNPLLLRASAEVD-LLICIYCYPKVSSYLKQYAQEPEFGFAKQQF 73

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL+      Q      +    + +     +  VT L+ +     +E    
Sbjct: 74  LDESLHCLNLSLNALNQRLQVVDLHPY----QAIKHAADKLGVTHLYADAVAGSDEQDVV 129

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             ++    H  + +S   S L     +      +   +T FRK + +  +   + ++   
Sbjct: 130 DNIQAEAPHLAVIQSEVRS-LFCVEDLPFELEALPDTFTKFRKKVEKLALAEPVEAVTRL 188

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
                G   P+               +F  GE+  L H  + F       Y + R+ +  
Sbjct: 189 PALPDGLALPT-----LSLTRDVQPSLFTGGERAGLEHCRQYFASTLASEYKQTRNGLDG 243

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L+ G LSP+  +  LK    +         +    EL+WRE++      Y
Sbjct: 244 MDYSTKFSPWLAHGCLSPKTIYAMLKRY--EAANGANDSTYWIYFELLWREYFYWYARRY 301

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                    I     +  +  +H  Q WK+G T FPI++A M QLN  G+M NR R + A
Sbjct: 302 KRQLFRFGGIQNQAPLT-SFYAHRFQQWKKGETPFPIVNACMHQLNETGYMSNRGRQLVA 360

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L ++WR G  YF SQL+D D+ASN G WQ+ A  G D     R FN   Q + +
Sbjct: 361 SCLVHELGLEWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEMY 419

Query: 419 DPQGTFIRHW 428
           DP   FI  W
Sbjct: 420 DPHMEFIDRW 429


>gi|47215847|emb|CAG02310.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 606

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 96/415 (23%), Positives = 159/415 (38%), Gaps = 40/415 (9%)

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L  +  +L +        +                + ++++L +    E     
Sbjct: 20  RFLLQCLEDLDANLRKLNSRLFVIRG----QPANVFPRLFKEWKISRLTFEYDSEPFGKE 75

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSL 177
           RD  ++K  +   +      S  L     L+  +++     P      Q L+ + D   +
Sbjct: 76  RDAAIKKLAKEAGVEVIVKISHTLY---DLDKIIELNGGQPPLTYKRFQTLISRMDPPEM 132

Query: 178 PVPAI------RLTGPVTPSN-----IPRFFDYPFQ---AIDPMFPIGEQNALHILRKFC 223
           PV  +      R   P++  +     +P   +  F        ++P GE  AL  + +  
Sbjct: 133 PVEMLSGNLMGRCVTPISEDHGEKFGVPSLEELGFDIEGLPSAVWPGGETEALTRIERHL 192

Query: 224 KEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           + K +    +R            + LSPYL  G LS R  + +L + +  +  K  S   
Sbjct: 193 ERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYRKVK-KNTSPPL 251

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           S   +L+WREF+       P     +   P   +I W+++   L  W +  TGFP IDA 
Sbjct: 252 SLYGQLLWREFFYTAATNNPRFDKMEG-NPICVRIPWDRNMEALAKWAEAKTGFPWIDAI 310

Query: 340 MRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S 
Sbjct: 311 MTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSC 369

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL----------PELNNVPTQYIHAP 443
            +    +F  + P   G+R DP G FI   L          P +  +P   +  P
Sbjct: 370 SSFFQQFFHCYCPVGFGRRTDPNGDFISRSLLASSSDGGRSPSVRLLPRPALSTP 424


>gi|309779656|ref|ZP_07674415.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA]
 gi|308921597|gb|EFP67235.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA]
          Length = 476

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 111/444 (25%), Positives = 190/444 (42%), Gaps = 29/444 (6%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR----QSH 59
            TA++  L W R+DLR+ D  AL AAC    + ++ V+     + +     AR    +  
Sbjct: 41  RTALNTVLFWFRSDLRLHDQPALRAACETGASHLVPVYCHADYEAQTPWGFARVGVHRRA 100

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
            + A+L  + + L+  G               + L +       + +         E   
Sbjct: 101 VLAAALRDLARQLADLGTRL----VECCGPPGKVLPALARAVGASTVVCEDIAAPYEQ-- 154

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------------ 167
              + +     +  ++   S L+ P  +      +  V+T FR+AL +            
Sbjct: 155 -AEVAELRSAGLQVQTVWQSSLIDPLCLPWPVQSLPAVFTTFRQALERARIAPSTPLSPP 213

Query: 168 -NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
             L       +  P +R    V    +       F    P F  GE   L  L ++ + +
Sbjct: 214 TRLPPWPSGVIIPPGLRAPAYVANQTLSTDSRASFPYGTPEFDGGETAGLRHLAQYLERQ 273

Query: 227 -VYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
             + Y   R+  A +  +S+ SP+L+ G LSPR+  + L++   +       G++    E
Sbjct: 274 LPHTYKRTRNALAGVDFSSKWSPWLATGALSPRRVISELQQ--FEQSHGQSDGSYWLWFE 331

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WR+++R L   + +       +    +     D    + W++  TG P++DAAMR+L 
Sbjct: 332 LLWRDYFRFLHLQHGARLYRARGLANEVRHAERPDVQGFERWRRASTGEPLVDAAMRELE 391

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
           T G++ NRLR + AS+LV +L  DWR G  +F SQL+D D+ SN G W + A  G D   
Sbjct: 392 TTGYLSNRLRQVVASYLVHELGGDWRAGAAWFESQLVDYDVYSNQGNWLYIAGRGTDPRG 451

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428
             R FN   Q   +DP G+++R W
Sbjct: 452 GRR-FNVRKQAAEYDPDGSYLRLW 474


>gi|90578157|ref|ZP_01233968.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14]
 gi|90441243|gb|EAS66423.1| deoxyribodipyrimidine photolyase [Vibrio angustum S14]
          Length = 443

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 111/426 (26%), Positives = 184/426 (43%), Gaps = 17/426 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE--QWRQH---GISARQSHFIYAS 64
            L W  NDLR+ DN  L+ A  + D+ ++ V+   P+  Q+ ++    +   +  F+  +
Sbjct: 5   GLYWFTNDLRLHDNPILHQAYEHCDS-LLCVYFMEPQKQQFNRYQLVSVGEIRHRFLLQA 63

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +Q +L+  G      Q                Q  +  ++ +R     E ++ + L+
Sbjct: 64  LQALQSNLATLGQRLLVMQADPMLSM----PVLIEQYGINLIYRSRHCGWYEQQQWRYLK 119

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +   H +     D   L     +      M K Y+ FRK + QN+  +    +P      
Sbjct: 120 QCYPH-LRFVEVDTHTLYSQDQLPFPLSDMPKSYSKFRKQIEQNVTVSSPLLVPDYLPPQ 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRDIP-AIQGT 242
                   +     +        +  GE  AL H+ + F       Y E R+       +
Sbjct: 179 PNVFCSDYLDIRHVHISDNDQVEWHGGENAALMHLQQYFSSSLPSNYKETRNAIEGWDNS 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++ SP+L+ G LS +     L +   +   +  S  +    EL+WREF+    A      
Sbjct: 239 TKFSPWLACGALSAKMIMATLLDY--EKYKEKNSSTYWIFFELLWREFF-QWHAHAVGRD 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           + +      +++  +      + W +G T +PI++A M+QLN  G+M NR R I AS LV
Sbjct: 296 LYRFSGVQNKRLLNSFYPTRFKQWCEGSTPYPIVNAFMKQLNKTGYMSNRGRQIVASCLV 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L +DWR G  YF  QL+D D+A+N G WQ+ A  G DS    R F+   Q + FDP  
Sbjct: 356 NELSIDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGTDSREK-RWFDLEKQTRIFDPNH 414

Query: 423 TFIRHW 428
            FIRHW
Sbjct: 415 HFIRHW 420


>gi|50914603|ref|YP_060575.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394]
 gi|50903677|gb|AAT87392.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394]
          Length = 368

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 171/378 (45%), Gaps = 16/378 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +   ++ V ++W R DLRI   KAL  A   S +  + VF    EQ      S  QS FI
Sbjct: 6   RRKGSVMVSVMWFRRDLRIDVQKALAHAIA-SQSPTLCVFQFNKEQLNLLH-SRNQSSFI 63

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             S+L  +K L  +GI              + L         T +++N         RD+
Sbjct: 64  T-SVLAFRKLLKCEGIDLYLMYGDLMTCFEQLLTQLK---DWTDVYFNYDESGYGRLRDQ 119

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
              +  +   I   ++ D  L     I+N + Q YKV+TP+ +       +  ++     
Sbjct: 120 KAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYPKETPIKVELSQ 179

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
              L        +        +    +    E  A   L +F ++++  Y   RD PA  
Sbjct: 180 GRWLNLETPDDVLRTVESIKDEKYQDVATFDE--ASKQLNRFIQDQLAAYHANRDFPAQL 237

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS+LSP+L IG +  R  ++ +++           G  ++L EL WR+FY  +   YP 
Sbjct: 238 GTSRLSPFLRIGAIGIRTVYHAVRQA------PNSLGQATFLKELAWRDFYNMVYVAYPD 291

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               +P      +IEW  +    Q WK+G TG+PI+DAAM QL   GWMHNRLRMI ASF
Sbjct: 292 Q-KTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASF 350

Query: 361 LVKDLLVDWRIGEEYFMS 378
           L KDLL DWR+GE+YF  
Sbjct: 351 LTKDLLCDWRLGEQYFQQ 368


>gi|89097604|ref|ZP_01170493.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911]
 gi|89087900|gb|EAR67012.1| Deoxyribodipyrimidine photolyase [Bacillus sp. NRRL B-14911]
          Length = 474

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 119/478 (24%), Positives = 195/478 (40%), Gaps = 35/478 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           +++VW R DLRI D++ L  AC +++ +VI ++IA P    +  +S R   F    L Q+
Sbjct: 1   MNIVWFRKDLRIHDHRPLAEACASAE-EVIPLYIAEP-LSGRKEVSRRHIQFAAEGLEQL 58

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L   G      Q +     I+ L+    +     LF++ +Y+      D+L  + + 
Sbjct: 59  DEGLRGLGGRLFAAQGT----IIDILEELLKRYGDFSLFFHLEYD---TDTDRLAAEWMG 111

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPAIRL 184
            + +    F      PPG +        K  + FRK   +++++       ++ VP    
Sbjct: 112 SKGLPFYPFH-----PPGQLEK-----PKSKSRFRKLWQESMLEELTDPPAAVRVPEKVP 161

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGT 242
                            +AI      GE+  +  L  F  E++  Y +    P  +   +
Sbjct: 162 DFLNLSVQKALGMKVKGEAIRFGQNGGEKRGIETLEFFIGEQLANYEKNYQKPLASSFSS 221

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+LSPYL+ G +SPR  ++   ++  +     K     + ++L+ R              
Sbjct: 222 SRLSPYLAYGNISPRLAYHEAAKKAENCTETEKQQLSLFQSKLLERSEALQWQEKETQAN 281

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                           D+ LL+ W+ G TG P +DA+MR L   GW++   R + A F  
Sbjct: 282 AADSNSARA------HDAELLEKWRTGNTGIPSVDASMRCLRKTGWLNYSSRRMLAGFAC 335

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
             LL+DW           LD + A +    +     G       +I +P   GK  D  G
Sbjct: 336 NILLLDWEKAALELALLFLDHEPAVHMK--EMGILAGKSGSKTVKIIDPVKWGKELDTDG 393

Query: 423 TFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +FIR ++PEL +V   YIH P  WL      L YP PI D +KA      Q    KK 
Sbjct: 394 SFIRRYVPELKDVDAAYIHEP--WLYPGFFQLGYPAPICDVRKAIKQAKRQIEDQKKD 449


>gi|254431842|ref|ZP_05045545.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
 gi|197626295|gb|EDY38854.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
          Length = 554

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 121/482 (25%), Positives = 188/482 (39%), Gaps = 30/482 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M + +VW R DLR+ D+ AL+ A   S+  V+ +FI  P   +       +   +  +L 
Sbjct: 1   MRLQVVWFRRDLRLGDHPALHQAA--SEGAVLPLFILDPALLQHPETGVARVGVLLDNLA 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK 125
            +   L Q            + +    L S     R   +  +   E I    RD  ++ 
Sbjct: 59  ALDHELKQLASRLLVR----WGEPAACLLSVVKAYRADAVLAHVDSERIVGRVRDARVQG 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +LQ   +   +    + PPG +    L  Y  Y  F   ++          L  P     
Sbjct: 115 QLQQAGVPLRW----IEPPGGL--EELVPYPAYRRFWHGVMAAEPLPAPGRLLTPPP-AA 167

Query: 186 GPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKV-YYYVEQRDIPAIQGTS 243
           G  T + +P            P  P G   AL  L+ FC+++V   Y  Q   PA + +S
Sbjct: 168 GESTAAAVPSLEALGMVDDGKPRPPGGSAAALQRLQAFCRQEVSSRYYWQLSYPAARASS 227

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            +SPYL  GVLS RQC   +           +      ++ L W         + P + +
Sbjct: 228 GISPYLKFGVLSHRQCLRAI-APLRRGDAGRQRSWRQLVSRLRWGAGMAQRFRYLPQLEL 286

Query: 304 GKPFIPWT-EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI-GW--MHNRLRMITAS 359
              +     + +  +    +   W++G TGFPI+DA  R L    GW  ++ R R I AS
Sbjct: 287 EPLWRCHRDDAVLRDTQEEMYLRWQEGRTGFPIVDAVSRCLLATGGWRDLNFRSRAIHAS 346

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP-YFRIFNPTIQG-KR 417
           FL     +DWR G  ++M  LLDGD   ++  W   A         + RI++P      R
Sbjct: 347 FLTNLCGIDWRYGALHYMRHLLDGDCPIDHYQWAMQAGVTAGGTGAWTRIYHPGQVAVNR 406

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            DP G FIR WLPEL  +    +  P +        L+Y       + A    L    A 
Sbjct: 407 CDPHGVFIRRWLPELAELTNDQLGLPPAMAAYPPPMLDY-------ETARRDRLRSLEAR 459

Query: 478 KK 479
           ++
Sbjct: 460 RQ 461


>gi|119471065|ref|ZP_01613624.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
 gi|119445905|gb|EAW27186.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
          Length = 436

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 108/426 (25%), Positives = 184/426 (43%), Gaps = 23/426 (5%)

Query: 11  LVWLRNDLRITDNKALYA-ACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYAS 64
           L WL+NDLR+ DN      A       V  VF+  P  +     +Q      +  F+  S
Sbjct: 6   LYWLKNDLRLNDNPIFSKLALQQCALDV--VFVINPNWFKNTNYQQKQYGENKYTFLMQS 63

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q++L  +G      +     + +  L     +Q + ++ Y+ Q+ + E R   LL+
Sbjct: 64  LYELQQALIARGQTLHVLEG----EPVSVLKQRIKEQHIDEVVYSEQFGVYEQREINLLK 119

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 +         L     +  +   + K +TPF+K +    +   L  +    +  
Sbjct: 120 AHCPQ-IQFTGTLQDTLYQQNELPFNLTDLPKSFTPFKKKVEAANIPITLSHITTELLPK 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQGT 242
              +   N         +AI+     G  +A  H  + F  E    Y   R+ +     T
Sbjct: 179 PITLCAKNPIELP----KAINNSMHGGLTSAQKHCEQYFAGELPSTYKITRNALDGFDNT 234

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++ SP+L+ G +S +Q +N +  E  +         +    EL+WRE+++       S  
Sbjct: 235 TKFSPWLAFGCISAKQIYNAV--EQYEQTYTANDSTYWIKFELLWREYFKWHALNVQSSL 292

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                   T+ +      +   AW QG T +P+++A M++LN  G++ NR R I AS LV
Sbjct: 293 FSFKGQKQTKPLTTFM-PNRFAAWCQGTTPYPLVNAIMKELNATGFITNRSRQIVASCLV 351

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L +DWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   Q ++FDP+ 
Sbjct: 352 NELGLDWRYGAAYFEQQLIDHDVAANWGNWQYIAGVGVDPRG-GRHFNIEKQTQQFDPKS 410

Query: 423 TFIRHW 428
            + + W
Sbjct: 411 IYTKKW 416


>gi|262275892|ref|ZP_06053701.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
           hollisae CIP 101886]
 gi|262219700|gb|EEY71016.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
           hollisae CIP 101886]
          Length = 427

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 113/427 (26%), Positives = 181/427 (42%), Gaps = 22/427 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64
            L W R+DLR+ DN AL          ++ VF+  PE +R        +   +  F+Y S
Sbjct: 3   GLFWFRHDLRLADNPALITLSRRCSKALM-VFVINPEWFRPAHYQSRHLGRFREEFLYQS 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +++ L +              + +  +   C +  +  +       + E ++   L 
Sbjct: 62  LRSLERELKKHKQRLVVK----VGNPLLVIPDLCKKHGIDMVAMTDHPGVYERQQVAYLS 117

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           + L+  V     +   L     +          ++ FRK + +  +   L  +P+ A   
Sbjct: 118 RTLRSEVSVS--ESFTLFLRSQLAFDKTTYPATFSQFRKHVEKQNI---LPCIPISAPDS 172

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQR-DIPAIQG 241
              V       +    F      +  GE   +  L +F  +      Y + R D+   Q 
Sbjct: 173 LPTVIDERRDIWGGQEFVYDLTPYHGGEDAGMVQLNQFFWKTQGLKNYKQTRNDLDGWQF 232

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           +S+LS +L+ G +SPR     L  +  +          S   EL+WRE+++ +M +Y + 
Sbjct: 233 SSRLSAWLANGSISPRTVAAEL--DNYEYRHGRSDSTQSMYAELLWREYFQWMMHYYGAD 290

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                 I  T  +         +AW+QG T FPI++A MRQLN  G++ NR R I AS L
Sbjct: 291 MFAFAGIKKTRPLT-TYYCQNYKAWEQGTTEFPIVNACMRQLNQTGYISNRGRQIVASCL 349

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           V +L VDWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   Q   +DP 
Sbjct: 350 VNELGVDWRFGAAYFEQQLIDFDVATNYGNWQYLAGVGADPRGQ-RHFNLEKQADVYDPN 408

Query: 422 GTFIRHW 428
           G F+  W
Sbjct: 409 GEFVERW 415


>gi|119945273|ref|YP_942953.1| DNA photolyase FAD-binding subunit [Psychromonas ingrahamii 37]
 gi|119863877|gb|ABM03354.1| DNA photolyase, FAD- binding- domain protein [Psychromonas
           ingrahamii 37]
          Length = 448

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 116/436 (26%), Positives = 180/436 (41%), Gaps = 26/436 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFI 61
           M   L W+  DLRI DN AL  A  +   +++ V++   + +     +   +   +  F+
Sbjct: 1   MKRTLYWVNKDLRINDNAALNLASKSD--RLLCVYVVDKQSFEANNFQSKPLGDIRWQFL 58

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L    +SLS+ G          + D++  L   C   ++T +   +     E R   
Sbjct: 59  QGCLEDFNESLSKLGQAMHI----VYGDTLSTLMRLCESYQITDVITTKLPGTYENRLIT 114

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL---RSLP 178
            L +RL    I +  D   L    S+     ++   Y+ FRK + + ++   +   +SLP
Sbjct: 115 QLNERLPELTIDQ-VDQFTLFTKKSLPFELDELPISYSKFRKKMAEVIIPEPVSTVQSLP 173

Query: 179 VPAIRLTGP--VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQRD 235
                L  P    P  +P       +     F  GEQ  L  LR  F       Y + R+
Sbjct: 174 SMFDTLPAPTRFKPEWLPTVSAIKAKQ-GFEFEGGEQQGLKHLRQYFSSNSPAEYKQVRN 232

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            +   + +S+LSP+L+ G +S RQ  N L E   +      S       EL+WRE+Y+  
Sbjct: 233 NLDGWKNSSKLSPWLNSGCISVRQVMNNLAE--FEQQHGKNSSTECLYLELLWREYYQ-- 288

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNK-DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
              Y        F    +              W  G T + +++A M +L   G++ NR 
Sbjct: 289 WVHYKVGAKTYQFKGLAKHRPLTTFYPERFNKWCLGNTPYSLVNAFMHELRQTGYLSNRG 348

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R I AS LV +L VDWR G  +F  QL+D D A N G WQ+ A  G D     R FN   
Sbjct: 349 RQIVASCLVNELSVDWRYGAAWFEEQLIDYDAAVNWGNWQYIAGVGVDPRG-GRHFNIEK 407

Query: 414 QGKRFDPQGTFIRHWL 429
           Q   +DP G +   W+
Sbjct: 408 QTTLYDPNGDYQAQWI 423


>gi|119502978|ref|ZP_01625063.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2080]
 gi|119461324|gb|EAW42414.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2080]
          Length = 433

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 128/441 (29%), Positives = 197/441 (44%), Gaps = 27/441 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQW-RQHGISARQSHFIYASLLQ 67
           HL W RNDLR+ DN A+  A H +   ++ V++   P  W    G+ A++  F+  SL +
Sbjct: 3   HLHWFRNDLRLRDNPAI--ASHTAADSLLCVYLMPKPRPWCNLVGVGAQRERFLRESLQE 60

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +   L+++G      + S        L     +  +T++         E +    L+++L
Sbjct: 61  LHLQLAEQGQALMVLEGSPEL----VLPDLVARFAITEVSTTFTPGSQERKTLAYLDQKL 116

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---LPVPAIRL 184
              V  +    + L  P  +      + KV++ FR+A+ +  V+    S   LP P    
Sbjct: 117 P--VPLQVHRGNSLFEPSDLPFELQDLPKVFSGFRRAVEKLNVRGPSPSTEVLPPPPAAQ 174

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQG 241
              + P++I +    P        P G    L  LR+F      +  Y E R+ + A+ G
Sbjct: 175 FDAIPPADISKPTMLP-------LPGGRSAGLRRLRQFVFDDRSITQYKETRNCLDALDG 227

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           +S LSP+L+ G LS R+  + +     + L       +    EL+WREF+ H  A     
Sbjct: 228 SSTLSPWLANGNLSVREVAHEVFRFERENL--SNESTYWLFFELLWREFF-HWRAVVDDA 284

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
            M K      +      D      W  G T FP+++A MRQL   GWM NR R I AS L
Sbjct: 285 QMFKIGGGSGKIRANTFDPRNFARWCAGDTNFPLVNALMRQLVATGWMSNRGRQIAASCL 344

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           + +L VDWR G  +F   L+D D+ SN G WQ+ A  G+D     R FN   Q  ++DPQ
Sbjct: 345 INELKVDWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGSDPRG-GRHFNIDKQAGQWDPQ 403

Query: 422 GTFIRHWLPELNNVPTQYIHA 442
           G F   W  +  + P   I A
Sbjct: 404 GVFTAKWGGDRPSQPHYVIDA 424


>gi|254452890|ref|ZP_05066327.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
           antarcticus 238]
 gi|198267296|gb|EDY91566.1| deoxyribodipyrimidine photolyase family protein [Octadecabacter
           antarcticus 238]
          Length = 445

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 97/416 (23%), Positives = 162/416 (38%), Gaps = 26/416 (6%)

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICKSFD 137
              H      DS + +    L   V+ ++ + +   +    RD  ++K  Q+  I     
Sbjct: 4   LGQHLVVKVGDSCDVIKKLHLDHDVSHVYAHEETGNLWTYHRDIAVQKLCQNHRIA---- 59

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197
             +   P + +   L+    ++  R A +   +     +L       +  +   N P F 
Sbjct: 60  --LHEAPTNGVVRRLRSRDDWSKIRNARMAKKILPKPNTLNSFPPCSSDTLPDKNDPIFG 117

Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPYLSIGVLS 255
           + P   +      G + A+  LR F   +   Y+     P       S+LS +L+ G LS
Sbjct: 118 NVPIGKVQ---KGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAHLAWGTLS 174

Query: 256 PRQCWNRLKEEFVDLLIKPKSG----AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
            R+    + +    L             ++ + L WR  +   +   P +       P  
Sbjct: 175 VREVAQSIVKRRAQLSPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPEIETH-CMHPAF 233

Query: 312 EKIE-WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           E +     +    QAW  G TG+P +DA MR L   GW+  R+R +  SF    L +DWR
Sbjct: 234 EGLRVGEHNDLHFQAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQLWLDWR 293

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           +  E+      D +   +    Q    +G   +   R++NP  Q    DP+GTFIR W+P
Sbjct: 294 VTGEHLARLFTDYEPGIHYSQLQMQ--SGVTGINTMRVYNPIKQSMEHDPKGTFIRKWVP 351

Query: 431 ELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           EL +VP ++IH P  W           L  +YP P+VD   +      Q  A +K 
Sbjct: 352 ELKSVPDEFIHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQISAIRKN 407


>gi|213648432|ref|ZP_03378485.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 202

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 132/201 (65%), Positives = 162/201 (80%)

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           WLNELIWREFYRHLM +YP++C  +PFI WT+++ W ++ H  QAW++G TG+PI+DAAM
Sbjct: 2   WLNELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAM 61

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQLN  GWMHNRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG 
Sbjct: 62  RQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT 121

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D+ PYFRIFNPT Q +RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PI
Sbjct: 122 DAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPI 181

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
           V+HK+A   TL+ Y AA+K +
Sbjct: 182 VEHKQARIATLSAYEAARKGA 202


>gi|254227923|ref|ZP_04921353.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|262396094|ref|YP_003287947.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
           Ex25]
 gi|151939419|gb|EDN58247.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
 gi|262339688|gb|ACY53482.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
           Ex25]
          Length = 444

 Score =  256 bits (653), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 114/430 (26%), Positives = 189/430 (43%), Gaps = 23/430 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSHF 60
             + L W  NDLR+ DN  L  AC   D ++I ++     TP      ++  +   +  F
Sbjct: 3   KKIGLYWFTNDLRLHDNPLLIDACAEMD-ELICLYCRPSVTPYLQHFAQETSLGRAKLQF 61

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           + ASL ++ +SL++ G      + + +    + +        +T ++ +     +E +  
Sbjct: 62  LEASLNELNQSLAKLGQRLWTVELTPY----QAIKYAISHFGITHIYADAFAGSDEQQAL 117

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           +   K   H  I K      LL    +     Q+   +T FRK +    +     S+   
Sbjct: 118 ERAIKGTPHVNI-KQQAIRTLLREEQLPFELRQLPATFTKFRKQVEGLDLSQPYESVHAL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
               +G   P+    +FD       P+F  GE + L H  R F       Y + R+ +  
Sbjct: 177 PPVPSGMNFPTATTYYFD-----TKPVFDGGELSGLEHCRRYFASSLASEYKQTRNELDG 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++ +++ SP+L+ G +SP   +  LK+   +         +    EL+WRE++      Y
Sbjct: 232 MEYSTKFSPWLAHGCVSPTIIYAMLKQY--EQKNGANDSTYWIYFELLWREYFYWYARKY 289

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                    I     +  +  +   + WK+G T FPI++A M QLN  G+M NR R + A
Sbjct: 290 QQKLFRFGGIANQPPLT-SFYAQRFKQWKKGETPFPIVNACMHQLNKTGYMSNRGRQLVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q + +
Sbjct: 349 SCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQTQTY 407

Query: 419 DPQGTFIRHW 428
           DP  +FI  W
Sbjct: 408 DPDFSFIDKW 417


>gi|254784878|ref|YP_003072306.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
 gi|237684101|gb|ACR11365.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
          Length = 447

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 122/442 (27%), Positives = 190/442 (42%), Gaps = 21/442 (4%)

Query: 1   MKATTAMS-VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGIS 54
           M A    S V + W  NDLRITDN AL  A  + +  +I V+I  P  +         + 
Sbjct: 1   MAAILPKSRVGVFWFSNDLRITDNAALNYAAQSCET-LICVYILDPRLYAPNRYGLRSMG 59

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
             +  F+  SL Q+   L+  G      + S      + +  Y        +  +RQ   
Sbjct: 60  PMRDRFLQESLAQLSVDLNAVGQTLLVLRESPLQAMAQLIGKYDPGL----VVRSRQAGF 115

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQAD 173
            E ++  +L++R +  +  K      L     +L   L  + K ++ FRK +       +
Sbjct: 116 YEYKQWAMLQRRYR-LISFKDIATHTLFNDEDLLPFPLTDLPKTFSQFRKKVEPLADIRN 174

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVE 232
           L  LPV  +         +     +        +F  G +  +  L+  F       Y  
Sbjct: 175 L--LPVCDLPPPPRGLKRDHTFRRELLKHQSRSIFKGGAEAGIQQLQGYFHTTAPSEYKT 232

Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ +     +++LSP+L+ G LS  Q    L E   +         +    EL+WRE++
Sbjct: 233 VRNALDGWGNSTKLSPWLANGCLSVNQVLLALGEY--EAQYSANESTYWISFELLWREYF 290

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +     + +    +  I  ++K+     S     W +G T FP+++A M+QLN  G+M N
Sbjct: 291 QWSAYLHGARLFARDGINGSKKLNTFY-SQRFMQWCEGSTPFPLVNALMKQLNVTGYMSN 349

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R ITAS LV +L +DWR G  YF  QL+D D+ASN G WQ+ A  G D     R FN 
Sbjct: 350 RGRQITASCLVNELALDWRYGAAYFEQQLIDYDVASNWGNWQYIAGVGADPRG-GRHFNL 408

Query: 412 TIQGKRFDPQGTFIRHWLPELN 433
             Q + FDP+G FI  W  E  
Sbjct: 409 DKQREIFDPEGDFIAKWGGESA 430


>gi|153831636|ref|ZP_01984303.1| cryptochrome dash [Vibrio harveyi HY01]
 gi|148872146|gb|EDL70963.1| cryptochrome dash [Vibrio harveyi HY01]
          Length = 450

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 115/430 (26%), Positives = 181/430 (42%), Gaps = 23/430 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSHF 60
            ++ L W  NDLR+ DN  L  A    DA +I V+     +P      ++    + +  F
Sbjct: 3   KTIGLYWFTNDLRMHDNPLLTRASEEVDA-LICVYCYPKLSPFLAHFAQESMFGSAKQQF 61

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +  SL+      Q      +    + +     +  VT L+ +      E    
Sbjct: 62  LDESLHCLNLSLNAFDQRLQVVDLHPY----QAIKHAVEKLGVTHLYCDAFSGSEEQDVV 117

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             + +  +H  IC+    S L     +      +   +T FRK   +  +     ++   
Sbjct: 118 DHIRQESEHLTICQQEVRS-LFTVEDLPFALEDLPDTFTKFRKKAEKVSLAEPFVTVTAL 176

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
            +  +G   P+               +F  GEQ  L H  R F       Y + R+ +  
Sbjct: 177 PLTPSGLALPT-----LRLIRDVKPCLFTGGEQAGLEHARRYFSSTLASEYKQTRNGLDG 231

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L+ G LSP+  +  LK    + L       +    EL+WRE++      +
Sbjct: 232 MDYSTKFSPWLANGCLSPKTIYAMLKRY--ERLKGANESTYWIYFELLWREYFYWYARRH 289

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                    I     +  +  +H  Q WK+G T FPI++A M QLN  G+M NR R + A
Sbjct: 290 KRQLFRFGGIQNQAPLT-SFYAHRFQQWKKGETPFPIVNACMHQLNETGYMSNRGRQLVA 348

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF SQL+D D+ASN G WQ+ A  G D     R FN   Q + +
Sbjct: 349 SCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEMY 407

Query: 419 DPQGTFIRHW 428
           DP   FI  W
Sbjct: 408 DPHMEFIDRW 417


>gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis]
 gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis]
          Length = 463

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/431 (23%), Positives = 150/431 (34%), Gaps = 29/431 (6%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             S  + WLR  LRI DN AL  A  N       V+I   +      I      F+  +L
Sbjct: 19  KTSHSIHWLRKGLRIHDNPALRDAVLNWGTF-RVVYILDTKSVASSNIGLNLWRFLLQAL 77

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  SL +        +        +       +  +T+L +    E     RD  +  
Sbjct: 78  EDLDDSLRKLNSRLFVIRG----QPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICM 133

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQ-MYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             +   V   S     L     I++         Y  F   +              P+ +
Sbjct: 134 LAREAGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQ 193

Query: 184 LTGPVTPSNIP-------RFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQ 233
             G    S+            +   +       ++  GE  AL  L +  + K +     
Sbjct: 194 KLGHTPLSDNHDELYGVPTMEELGLETSKLFVEVWHGGETEALKRLDRHLERKAWIASFG 253

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           +            S +SPYL  G LSPR  + RL + +  +  K      S   +L+WRE
Sbjct: 254 KPKVTSDSLMASPSGVSPYLRFGCLSPRLFYYRLMDLYRKV--KGGPPPTSLYGQLLWRE 311

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH---LLQAWKQGYTGFPIIDAAMRQLNTI 346
           F+  +    P+    +   P    I+W  D      LQ W    TGFP IDA M QL   
Sbjct: 312 FFFVVSTNNPNFDKMES-NPICLYIKWRTDKQVASDLQKWTDAQTGFPWIDAIMSQLKQE 370

Query: 347 GWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           GW+H   R+  ASFL +  L + W  G + F   LLD D +SN G W W  S    S  +
Sbjct: 371 GWIHYLARVAVASFLTRGCLWISWEAGMKVFAEHLLDADWSSNAGNWMWW-SYSAFSQQF 429

Query: 406 FRIFNPTIQGK 416
           F    P     
Sbjct: 430 FNPPCPVEFSN 440


>gi|229918425|ref|YP_002887071.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b]
 gi|229469854|gb|ACQ71626.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b]
          Length = 404

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 123/427 (28%), Positives = 184/427 (43%), Gaps = 32/427 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYAS 64
            ++W +NDLR+ D+  L  A H+ D  +   F  +P Q+ ++      +   +  F+  S
Sbjct: 3   TIIWYQNDLRVDDHLPLEEALHHDD-PIEGHFFISPNQFIENRYGVIPLGNERLRFLKES 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  V  SL   GI F  H        +E LD         +L + R    NE RR+  + 
Sbjct: 62  LEDVSGSLDALGIPFYVH----VGHPLETLDPS------DRLLFQRAVGYNERRRENEVM 111

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           KR +     K+F+   L                  PF     +  V+ D+R   + + + 
Sbjct: 112 KRWK--GTYKTFEGFTLFEKEDNPFEK-------MPFLFTEFRKAVEYDVRPRELISRKA 162

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           T        P       Q     FP   GE  A   L  +    +  Y E R+   +  +
Sbjct: 163 TAATREVTFPFSIQEVKQDPRTAFPFKGGELAAKRRLNDYLSVPIRTYKETRNGFGVDDS 222

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++LS YL+ G LSPR+ +  L+    +         +    EL+WREF++ +        
Sbjct: 223 TKLSAYLANGSLSPRRVFFELEAH--ERTHGVNESTYWLYFELLWREFFQWVALDQGKKL 280

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                I    K +W  D  +++ W++G TG   +DA MR+LN  GWM NR R I A++  
Sbjct: 281 FRSQGIRSKRK-DWRVDPDVVETWRRGETGVDFVDAFMRELNATGWMSNRGRQIVANYFA 339

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           K+L  DWR G  YF S+L+D D+ASN G W + A  GNDS    R FN   Q   +DP  
Sbjct: 340 KELKQDWRYGASYFESKLIDYDVASNWGNWAYQAGVGNDSR--DRRFNIERQQFTYDPDR 397

Query: 423 TFIRHWL 429
            F   WL
Sbjct: 398 AFRNKWL 404


>gi|323352252|gb|EGA84789.1| Phr1p [Saccharomyces cerevisiae VL3]
          Length = 406

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 116/395 (29%), Positives = 188/395 (47%), Gaps = 33/395 (8%)

Query: 12  VWLRNDLRITDNKALYAAC--------HNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
            W RNDLR+ DN  LY +          N+ AK+ AV++   + WR H  S  +  FI  
Sbjct: 2   HWFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLMFIMG 61

Query: 64  SLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQR---VTKLFYNRQYE 113
           +L  +Q+SL++  I     +        SN  + +E+    C+       T +  N +Y+
Sbjct: 62  ALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTGTIITANIEYQ 121

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
            +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K  +  +    
Sbjct: 122 TDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYVNNYK 181

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKF 222
             +  +  + +  P+  +       + +   D               + E+ AL  L+ F
Sbjct: 182 KSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEEAALSRLKDF 241

Query: 223 CKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE----EFVDLLIKPKSGA 278
              K   Y  ++D+  + GTS LS Y++ G +S R   N+  +    + +   +K  S  
Sbjct: 242 LGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIMSKALKDNSST 301

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  G TG PI+DA
Sbjct: 302 QNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIPIVDA 361

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
            MR+L   G+++NR RMITASFL K+LL+DWR G 
Sbjct: 362 IMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGG 396


>gi|332993096|gb|AEF03151.1| deoxyribodipyrimidine photolyase [Alteromonas sp. SN2]
          Length = 437

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 112/435 (25%), Positives = 185/435 (42%), Gaps = 12/435 (2%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS-H 59
           M+ TT  +  L W R+DLR  D  AL + C   D   + ++I     +  +    +    
Sbjct: 8   MRDTTRPTRGLFWFRHDLRFHDQVALSSLCQQVDELTL-LYIIDDSWFVPNSYGIQPVGE 66

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
             +  L+   ++L++K     +   +    + E L S       T          NE R 
Sbjct: 67  HRFNFLIDTIEALNEKASTLGHSILTLRGQTPELLVSLLSSNAFTHFGVTEHGGYNERRE 126

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            + + +     +   + + S L     +  +   M  V+TPF++ +   +   +  +   
Sbjct: 127 VEAVSRFFP-NIEIVTGESSSLFNQDDLPFNLEVMPDVFTPFKRKIESAIKPREPMATLT 185

Query: 180 PAIRLTGPVTPSNIPRFFDY--PFQAIDPMFPIGEQNALHILRKFCKEKV--YYYVEQRD 235
              R   P   +      +   P    +  F  GE   L  L  +  E      Y E R+
Sbjct: 186 ALPRSYTPDIDAECQYTLNRRPPRNQAEGTFVGGEDAVLSHLNSYLFEWKVAASYKETRN 245

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            +   + +++LSP+L+ G LS R     +K+   +++       +    EL+WRE++  L
Sbjct: 246 ALDNWRDSTKLSPWLATGALSARYVIQEVKKYEQNVV--KNDSTYWIYFELLWREYFYWL 303

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              + S       I  ++    + D  +   W  G TG+PI+DA MRQL + G++ NR R
Sbjct: 304 QQKFGSKWFQLEGIK-SKLPNTSHDPQVFVGWCNGQTGYPIVDACMRQLASTGYLSNRGR 362

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            + AS LV +L  DWR G  +F SQLLD D+ASN G W + A  G D     R FN   Q
Sbjct: 363 QLVASCLVNELRQDWRYGAAWFESQLLDYDVASNWGNWLYLAGVGTDPREN-RQFNLQKQ 421

Query: 415 GKRFDPQGTFIRHWL 429
            + +DP+G F   WL
Sbjct: 422 TEIYDPKGEFCAKWL 436


>gi|156977901|ref|YP_001448807.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
 gi|156529495|gb|ABU74580.1| hypothetical protein VIBHAR_06693 [Vibrio harveyi ATCC BAA-1116]
          Length = 460

 Score =  253 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 117/430 (27%), Positives = 182/430 (42%), Gaps = 23/430 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSHF 60
            ++ L W  NDLR+ DN  L  A    DA +I V+     +P      ++    + +  F
Sbjct: 13  KTIGLYWFTNDLRMHDNPLLARASEEVDA-LIFVYCYPKLSPFLAHFAQESMFGSAKQQF 71

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  V  +L+      Q      +      ++  C    VT L+ +      E    
Sbjct: 72  LDESLHCVNLTLNAFDQRLQVVDLHPYQAIKHAVEKLC----VTHLYCDTFPGSEERDVV 127

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             + + L+H  IC+    S+L     +      +   +T FRK      ++    ++   
Sbjct: 128 DHIRQELEHLTICQQEVRSLL-TVEDLPFALEDLPDTFTKFRKKAENVSLEEPFATVTAL 186

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPA 238
               +G   P+               +F  GEQ  L H  R F       Y + R+ +  
Sbjct: 187 PPTPSGLALPT-----LRLIRDVKPCLFTGGEQAGLEHARRYFSSTLASEYKQTRNGLDG 241

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  +++ SP+L+ G LSP+  +  LK    + L       +    EL+WRE++      +
Sbjct: 242 MDYSTKFSPWLAHGCLSPKTIYAMLKRY--ERLKGANESTYWIYFELLWREYFYWYARRH 299

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                    I     +  +  +H  Q WK+G T FPI++A M QLN  G+M NR R + A
Sbjct: 300 KRQLFRFGGIQNQAPLT-SFYAHRFQQWKKGETPFPIVNACMHQLNETGYMSNRGRQLVA 358

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           S LV +L +DWR G  YF SQL+D D+ASN G WQ+ A  G D     R FN   Q + +
Sbjct: 359 SCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEIY 417

Query: 419 DPQGTFIRHW 428
           DP   FI  W
Sbjct: 418 DPHMEFIDRW 427


>gi|116256289|gb|ABJ90474.1| cryptochrome 1 [Equus caballus]
          Length = 378

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 151/387 (39%), Gaps = 30/387 (7%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L  +  +L +        +        +       +  +TKL      E     RD
Sbjct: 2   LLQCLEDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWNITKLSIEYDSEPFGKERD 57

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPV 179
             ++K      +      S  L     L+  +++     P      Q L+ + +   +PV
Sbjct: 58  AAIKKLATEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPV 114

Query: 180 PAI------RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKE 225
             I      + T P++  +  +       +  F        ++P GE  AL  L +  + 
Sbjct: 115 ETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLER 174

Query: 226 KVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           K +    +R            + LSPYL  G LS R  + RL + +  +  K  S   S 
Sbjct: 175 KAWVANFERPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLTDLYRKVK-KNSSPPLSL 233

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
             +L+WREF+       P     +   P   +I W+K+   L  W +G TGFP IDA M 
Sbjct: 234 YGQLLWREFFYTAATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMT 292

Query: 342 QLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S  +
Sbjct: 293 QLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSS 351

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRH 427
               +F  + P   G+R DP G +IR 
Sbjct: 352 FFQQFFHCYCPVGFGRRTDPNGDYIRR 378


>gi|323496729|ref|ZP_08101774.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
 gi|323318154|gb|EGA71120.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
          Length = 417

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 187/432 (43%), Gaps = 25/432 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWR---QHGISARQSHFI 61
              L W  NDLR+ DN  L  A    D ++I V++    TP   +   Q  + A +  F+
Sbjct: 3   KTGLYWFTNDLRVADNPLLTEAASEVD-QLICVYLYPQLTPFLAQFSGQQQLGAHRLRFV 61

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  +  SL+++G             + + L S   Q  VT L+ NR    +E ++  
Sbjct: 62  DQALQDLNHSLAKQGQRLAVIH----QTAEQTLPSLIEQYNVTHLYVNRCAGWDETKQMH 117

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L+++  +  +  S   + L     +     Q+   +T FRK +     +  L    +P+
Sbjct: 118 TLKQQFPYLKVV-SLSVNSLFQESQLPFTLAQLPATFTRFRKCMEPVNTRDLLPVSELPS 176

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAI 239
             L                +         GE     H    F  +   +Y + R+ +   
Sbjct: 177 TPLPPEERSQPHQADPRVDYL-------GGETAGQQHCQWYFSHDFASHYKQTRNGLVGK 229

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +++ SP+L++G LSP Q    ++    +  I      +  + EL+WRE++      + 
Sbjct: 230 SYSTKFSPWLALGCLSPAQLVAYIQRYEHE--IGANESTYWIVFELLWREYFYWYAMKHG 287

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           ++   +  I     +    D      W +G T F I++A M+QL+  G++ NR R + AS
Sbjct: 288 ALLFARSGIT-ASTVTKPLDQSKFHRWTKGETDFAIVNACMKQLHATGYLSNRGRQLAAS 346

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
            L+ +L +DWR G  YF +QL+D D+ASN G WQ+ A  G D  P  R FN   Q + +D
Sbjct: 347 CLIHELDMDWRYGAAYFETQLIDYDVASNWGNWQYLAGVGADPNPSRR-FNLDKQTQMYD 405

Query: 420 PQGTFIRHWLPE 431
           P   FI  WL E
Sbjct: 406 PHRQFITRWLGE 417


>gi|295096577|emb|CBK85667.1| Deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 278

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 121/269 (44%), Positives = 165/269 (61%), Gaps = 4/269 (1%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M  HLVW R DLRI DN AL AAC   DA V+A+FIATPEQWRQH ++ RQ+  + A L 
Sbjct: 1   MPTHLVWFRADLRIHDNFALAAACRAKDANVLALFIATPEQWRQHDMAPRQAALLSAYLN 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +Q SL++KGI   Y +  +F    + + + C Q  VT L+YN QYE NE +RD+ LEK 
Sbjct: 61  DLQHSLAEKGIPLIYKEAHDFAAQRQTVQAICQQHAVTHLYYNYQYEFNEQQRDRQLEKT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L   V+C+ FDDSV+L PGS++  + +MYKV+TPF+ A I+ L +     +  P +R   
Sbjct: 121 LA-GVVCEGFDDSVMLAPGSVMTGSHEMYKVFTPFKNAFIKRLKEGLPECVTAPTVR-GE 178

Query: 187 PVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            +T     R  +YP Q+ D  +FP  E+ A+  LR+FC +    Y  +RD PA +GTS+L
Sbjct: 179 TITDMPAIRL-NYPQQSFDETVFPASEKAAIDRLRQFCTQGAAEYEARRDFPATEGTSRL 237

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           S  L++G LSPRQC +RL  E    L   
Sbjct: 238 SACLALGALSPRQCLHRLLAEQPQGLDGG 266


>gi|152994374|ref|YP_001339209.1| cryptochrome DASH [Marinomonas sp. MWYL1]
 gi|150835298|gb|ABR69274.1| Cryptochrome DASH [Marinomonas sp. MWYL1]
          Length = 441

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 107/429 (24%), Positives = 177/429 (41%), Gaps = 20/429 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFI 61
           M + LVW  +DLR  D   L+ A    D  +I ++   P      ++   G+SA +   +
Sbjct: 1   MKLGLVWFGDDLRCADQNMLWRAVQEVDY-LICLYCDEPHNNHPSRYATQGMSANRRRLL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  +   L   G            D+   L+    +  ++ L+ N     +E +   
Sbjct: 60  NQGLQDLALQLQALGQTLFVSSM----DAATSLNLLLNEIPISHLYRNHHGGWDEQQTLN 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +E R    V         L  P  +     Q+   ++ FR+ +    V   L +L    
Sbjct: 116 RIESRYSD-VRIHLDHGLSLFTPSQLPFDIAQLPDSFSKFRRLVENLDVFTPLPALQKLP 174

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL-RKFCKEKVYYYVEQRD-IPAI 239
              T  +      +         + MF  GE+ A+  L   F      +Y E R+ +   
Sbjct: 175 PAPTFDIQCIRPWQLKQI---EDNSMFTGGERAAVDQLSDYFSTNLPSHYKETRNELDGW 231

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           + +++ SP+L+ G LS RQ   +   +  +         +    EL+WRE++      Y 
Sbjct: 232 ENSTKFSPWLAQGSLSARQI--KASIDVYERDHGANESTYWIYFELLWREYFHWYATCYG 289

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                 P     ++ + +  +   + W QG T +P+++A M+QLN  G+M NR R I AS
Sbjct: 290 KQLF-LPGGLSGKQTQGSYYAERFRKWSQGNTPYPLVNACMKQLNETGFMSNRGRQIVAS 348

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
            L+ +L +DWR G  YF  QL+D  + SN G WQ+ A  G D     R FN   Q +++D
Sbjct: 349 CLIYELGIDWRYGAAYFEEQLIDYSVGSNWGNWQYIAGVGADPRG-GRHFNLQKQTEQYD 407

Query: 420 PQGTFIRHW 428
           P   FI  W
Sbjct: 408 PNLHFIHKW 416


>gi|254281574|ref|ZP_04956542.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
 gi|219677777|gb|EED34126.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
          Length = 439

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 106/425 (24%), Positives = 166/425 (39%), Gaps = 23/425 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           HL W + DLR+ DN AL +         + +   T       G+  ++  F+  SL  ++
Sbjct: 9   HLHWFQRDLRLADNPALSSHVAADTLLCVYLMPKTGPWCNVTGMGPQRDRFLRESLQALR 68

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             L++ G      + S        L     +  +T++         E    + L++RL  
Sbjct: 69  DELNRLGQDLLVLEGSPEL----VLPDLVSRFDITEVSACTAPGYYERLTYERLQRRL-- 122

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD---LRSLPVPAIRLTG 186
            V  +    + L     +          +TPFRK +    +        +LP P      
Sbjct: 123 GVPFELHRGNTLFTEDQLPTGLADFPATFTPFRKQVEPLTITPPAAEPVTLPPPPAAQFD 182

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KEKVYYYVEQRD-IPAIQGTS 243
            + P+        P        P G    L  +R+F   + ++  Y E R+ +  + G+S
Sbjct: 183 AIPPAQALPSPALP-------IPGGRAAGLRRVRQFIFDERRIVSYKETRNCLDGLDGSS 235

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+L+ G LS R+  + +     + L       +    EL+WREF++           
Sbjct: 236 SLSPWLANGNLSAREVAHEIFRFEREQL--ANESTYWLFFELLWREFFQWRAVIDDHGLF 293

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
                          D      W  G T FP+++A M QL   GWM NR R I AS L+ 
Sbjct: 294 HIGG-VQKRGRRCCFDPRAFARWSAGDTDFPLVNALMHQLTDTGWMSNRGRQIVASCLIN 352

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L  DWR G  +F   L+D D+ SN G WQ+ A  G D     R FN   Q  + DP+  
Sbjct: 353 ELGQDWRFGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRHFNLDKQAAQHDPENI 411

Query: 424 FIRHW 428
           F   W
Sbjct: 412 FTTKW 416


>gi|254516979|ref|ZP_05129037.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
 gi|219674484|gb|EED30852.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
          Length = 438

 Score =  251 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/425 (24%), Positives = 170/425 (40%), Gaps = 23/425 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W RNDLR+ D+  L AA    +  ++ ++          G+  ++  FI  SL ++ 
Sbjct: 7   AIYWFRNDLRLHDHPGLVAAAAADELLLVYLWPRQRAWCNTQGLGEQRERFICESLTELA 66

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K L   G      Q S        +        V  +  ++     E R  ++L +RL  
Sbjct: 67  KDLQPLGQKLLVLQGSPEL----VIPDLVRDYGVNAIHTSQCAGSYETRALRVLRERLD- 121

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIRLT 185
            +       + L     +     ++   ++PFR+ + + L   +       LP P     
Sbjct: 122 -IPVLEHGGNSLFQEKDVAALCPELLDSFSPFRRKVEKQLTAVEPSRNLPQLPAPPAVQF 180

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTS 243
             + P+        P +        G       L++F     +  Y E R+ +  ++G+S
Sbjct: 181 HSIPPARTKPPLGLPLR-------GGSHAGQRRLKQFLDSGAIRQYKETRNCLDPLEGSS 233

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+LS+G +S R+    + +   +         +    EL+WRE++    A    V +
Sbjct: 234 TLSPWLSLGSISAREIAAAIAQHEAEQG--ANESTYWLYFELLWREYFF-WRALRDGVNL 290

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
            +             +      W  G T  P+++A M QL   GWM NR R I AS L+ 
Sbjct: 291 FRHGGRQGAVSRCTFEPRNFARWCAGDTNHPLVNALMHQLVATGWMSNRGRQIAASCLIH 350

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           D  +DWR G  +F   L+D D+ SN G WQ+ A  G D     R FN   Q  ++DP G 
Sbjct: 351 DFGIDWRYGAAFFEKHLIDYDVGSNYGNWQYIAGVGADPRG-GRAFNIDKQTAQYDPDGV 409

Query: 424 FIRHW 428
           F   W
Sbjct: 410 FTHKW 414


>gi|76803462|ref|YP_327731.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
 gi|76559277|emb|CAI50885.2| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
          Length = 616

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 123/532 (23%), Positives = 196/532 (36%), Gaps = 79/532 (14%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69
           +VW R  LR  D  AL  A    D  V  + +  P  +   G++   +  F + ++  + 
Sbjct: 48  VVWHRKHLRTADQLALTRAVSGGDV-VCPLLVFDPAFYGDGGLACDARIRFFHEAVASLD 106

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR--------------------------- 102
           +  +               + +       L +                            
Sbjct: 107 RLYAAAPAPTVTRTAEAPRERLAATTPLSLNETREDDRTAEDSLSGASSPGLTIGYGSPP 166

Query: 103 -VTKLFYNRQYEI---------NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL 152
            V + F N+ + I            RRD  +     + +   S D       G +     
Sbjct: 167 TVLQRFANKGWTILTMATPTSRYGKRRDDRVRDVCGNSIEFISGD-------GLVRGQEW 219

Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIG- 211
                 T     L +        +       L   +TP+ I   FD        + P G 
Sbjct: 220 SRTNWQTHVETWLNEAPHTPAWSTADTTQFVLETGITPAAIDAAFDI--SPSKTLVPTGT 277

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            + A   LR F  E+++ Y      P  A + +S LSPYL+ G+LS RQ +  + E+  +
Sbjct: 278 HRRAAERLRSFV-ERIHSYPGNISAPQDAREASSGLSPYLNFGLLSVRQVYQSVSEQAPE 336

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                  G   + + L+W   Y   +  +P          + +    + D  L+QAWK G
Sbjct: 337 CR-----GRQMFTDRLVWNLHYNQKLVDWPGWTDTAVNPVFEDFNRDHHDPELVQAWKGG 391

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TGFP++DAAMR L   GW++ R+R + ASF V  L   W IG +++   L+D D+  N 
Sbjct: 392 ETGFPMVDAAMRCLRQTGWLNFRMRAMCASFFVHILQQPWWIGADWYHHHLIDSDVGINY 451

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
              QW +  G    P  R++NP  Q +  DP G +I  WLPEL  +P  ++  P      
Sbjct: 452 T--QWQSQAGTIGKPVQRVYNPRKQVRDHDPDGDWICRWLPELAPLPNTFLDRPERTPLA 509

Query: 450 ND------LSLNYPLPIVD--------------HKKACHHTLNQYYAAKKQS 481
                   +  +YP P+VD              H  A    L +   AK+ S
Sbjct: 510 VQTDCGVTIGDDYPRPVVDFDARREAFWSRYERHHPAAARQLARPEIAKRAS 561


>gi|269965489|ref|ZP_06179607.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
 gi|269829852|gb|EEZ84083.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
          Length = 450

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 113/431 (26%), Positives = 182/431 (42%), Gaps = 23/431 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
              + L W  NDLR+ DN  L +A    D ++I ++     TP      ++      +  
Sbjct: 2   KKKIGLYWFTNDLRLHDNPLLKSASVEMD-ELICLYCYPSMTPYLHHFAQEASFGRAKLQ 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+ +SL ++ +SL+  G      + +        ++ +     VT ++ +     +E + 
Sbjct: 61  FLDSSLSELNQSLNHLGQRLWAVELTPDQAIKYAVNRF----GVTHIYADAFPGSDEQQA 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + +   H V  K      LL    +      +   +T FRK +    +     S+  
Sbjct: 117 LDRVAEGASH-VKIKQQAIRTLLREEQLPFDLSNLPTTFTQFRKQVEGLDISRPHESIRS 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
                 G   PS    +FD         F  GE   L H  + F       Y + R+ + 
Sbjct: 176 LPPIPLGVNLPSVTAYYFD-----AKAAFHGGESRGLEHCRQYFASTLASEYKQTRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L+ G +SP+  +  LK    +         +    EL+WRE++      
Sbjct: 231 GMDYSTKFSPWLAHGCVSPKTIYAMLKRY--EAENGANDSTYWIYFELLWREYFYWYARR 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +         I     +  +  +H  Q WK+G T FPI++A M QLN  G+M NR R + 
Sbjct: 289 HKRQLFRFGGIQNRAPLT-SFYAHRFQQWKKGETPFPIVNACMHQLNETGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF SQL+D D+ASN G WQ+ A  G D     R FN   Q + 
Sbjct: 348 ASCLVHELGLDWRYGAAYFESQLVDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTEM 406

Query: 418 FDPQGTFIRHW 428
           +DP   FI  W
Sbjct: 407 YDPHMEFIDRW 417


>gi|84385647|ref|ZP_00988678.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
 gi|84379627|gb|EAP96479.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
          Length = 462

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 117/449 (26%), Positives = 195/449 (43%), Gaps = 31/449 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHGISARQSHF 60
             + L    NDLRI DN+ LY A  + D K+I V +       + +  ++   SA +  F
Sbjct: 2   KKIGLYLFTNDLRINDNQLLYYAAQSVD-KLICVIVEPTLVRFSADLAQEQSYSAHRQAF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNF--DDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           +  S+  ++ +L + G      + ++   D + + L    + Q VT  F N     +E +
Sbjct: 61  VSQSIANLESNLVKLGQQLVVIRSNHLEPDTAEKTLSHIIVSQHVTHFFANAHCGYDERQ 120

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             + ++++  + V+C     S L     +     ++   +T FRK +    V  +   + 
Sbjct: 121 LIRSIQRQSPNLVMCLPHH-STLFDSHELPFELSKVPSSFTKFRKLVEHLDVNRNETVIS 179

Query: 179 VPAIRLTGPVTPSNIPRFFDYP--FQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQRD 235
                +   +T ++    F  P     +   +  GE   L  L   F  +  + Y + R+
Sbjct: 180 ALPPAVRLALTSTSTISLFSSPNDESVVISDYWGGEGAGLAHLENYFSHDYAFNYKQTRN 239

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
               I+ +++ SP+L++G +SP+  +  LK+   D  I      +    EL+WRE++   
Sbjct: 240 VFDGIENSTKFSPWLALGCVSPKTIYCHLKQFEADHGI--NDSTYWIYFELLWREYFYWK 297

Query: 295 MAFYPSVCMGK-PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                S   G+               +  L  WK G T +PI+DA MRQLNT G+M NR 
Sbjct: 298 CLSLGSSLFGETSDHELNSSNSSATLNLNLAKWKSGNTNYPIVDACMRQLNTTGYMSNRG 357

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS--------------TG 399
           R + AS L+ +L +DWR G  YF SQL+D D+ASN G W + A                 
Sbjct: 358 RQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALRPQVSTQTNKQKNA 417

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           N + P  R F+   Q   +DP   FI  W
Sbjct: 418 NQAQPKSRHFDLGKQTDMYDPDHAFINKW 446


>gi|261856009|ref|YP_003263292.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
 gi|261836478|gb|ACX96245.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
          Length = 447

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 120/457 (26%), Positives = 189/457 (41%), Gaps = 36/457 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFI 61
           MS  L W R DLR+ DN+    AC  +DA ++ V+I  P      +W    I   +   +
Sbjct: 1   MSRVLYWFRQDLRLRDNRCFIRACDQADA-LLPVYILDPAMEQPTRWGFDRIGPHRRVVL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  + + L Q+G      Q       ++ L +   Q  +  ++        E     
Sbjct: 60  GQALRGLDRQLRQRGSGLCLLQG----QPVDQLLAMVRQGAIDTVWVEDIAAPQERALVD 115

Query: 122 LLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
            L++ L+   V   +   S L+ P  +     ++   +TPFRK + Q  V  +    P P
Sbjct: 116 ALKQSLEPLGVSVYTGWQSSLIAPDDLPFAIDRLPDSFTPFRKRVEQAAVCIE-HPYPAP 174

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAI------------------DPMFPIGEQNALHILR-K 221
                 P +        D  F A+                  DP   + E  A   L   
Sbjct: 175 DAVPPWPESVPYPTASIDAQFDALCGASTRPAVDARSAFPCDDPDCSVDEIGAQRHLDQY 234

Query: 222 FCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
           F +   + Y   R+ +     +S+ SP+L++GVLS RQ +     +  +       G + 
Sbjct: 235 FARGLPHTYKATRNQLIGKDYSSKWSPFLALGVLSARQVY--AARQHFEQARGANEGTYW 292

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
              EL+WR+++R L   Y         +          D+   + WK   TG   IDAAM
Sbjct: 293 LRFELLWRDYFRFLHLKYGRRLYHARGLAPDRPAP-THDADRFERWKNADTGHAFIDAAM 351

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
            +L+  G++ NR+R + AS+L+ DL  DWR G  +F SQL+D D+ SN G W + A  G 
Sbjct: 352 TELSRTGYLSNRMRQVVASYLIHDLGCDWRAGAAWFESQLVDYDVYSNQGNWLYLAGYGT 411

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
           D     R FNP  Q + +DP G +   WL     +P 
Sbjct: 412 DPRGSRR-FNPDKQAQDYDPGGAYRALWLSGTAAMPA 447


>gi|312881360|ref|ZP_07741157.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309371000|gb|EFP98455.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 431

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 110/434 (25%), Positives = 180/434 (41%), Gaps = 32/434 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVF------IATPEQWRQHGISARQSHFIY 62
           + L W  NDLR+TDN  L+ A    D ++I ++          +   Q    A ++ F+ 
Sbjct: 5   IGLYWFTNDLRLTDNPLLHKASKEVD-QLICLYTRPQLTCFLQKYSCQERWGAARTLFLN 63

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  + +SL   G                 L     +  V+ L+ N+    +E    + 
Sbjct: 64  QSLRNLSESLDDVGQQLTVVDEPTIGT----LSDLVTKHEVSDLYCNQFAGFDEQSVIEQ 119

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL----IQNLVQADLRSLP 178
           L +     +I      + L     +      +   +T FRK +    ++ LV+      P
Sbjct: 120 LGRNFSDLII-HQNSSNHLYSEEQLPFALNGLPNTFTKFRKLVEGISLRELVEVPRLPPP 178

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-I 236
           + ++     +      +  +         F  GE   + H LR F  ++   Y   R+ +
Sbjct: 179 IKSVGRGVQIPAEKQMQSVE---------FLGGEVFGMDHCLRYFSTKRASEYKLTRNGL 229

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                +++ SP+L+ G +SPRQ    L++   +         +    EL+WREF+     
Sbjct: 230 DGPSYSTKFSPWLAHGCISPRQVLEVLRDY--EQKNGANESTYWIFFELLWREFFYWYAR 287

Query: 297 FYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            +         I    K   +    S     W +G T FPI++A M QL   G+M NR R
Sbjct: 288 RWGKNLFLYSGIKTCSKPAAKGTSVSTAFSNWIEGKTDFPIVNACMNQLRKTGFMSNRGR 347

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            + AS L+ +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D+ P  R FN   Q
Sbjct: 348 QLVASCLIHELGIDWRCGAAYFETQLIDYDVGSNWGNWQYLAGVGADTQPA-RQFNLGKQ 406

Query: 415 GKRFDPQGTFIRHW 428
            + +DP+  FI  W
Sbjct: 407 TEIYDPKREFIMQW 420


>gi|163803660|ref|ZP_02197523.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
 gi|159172532|gb|EDP57394.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
          Length = 446

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 112/429 (26%), Positives = 174/429 (40%), Gaps = 23/429 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHGISARQSHFI 61
            + L W  N+LRI DN  L      + +++I ++             ++      +  F+
Sbjct: 4   KIGLYWFTNELRIHDNPLLAE-VDKAVSELICIYCYPKLPPFLTHFAQEAQFGQNKLRFL 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL  +  SL+ +    Q      +      ++       VT L+ +    ++E     
Sbjct: 63  DESLHCLNLSLNARNQRLQVVDLLPYQAIKHAIEKL----DVTHLYCDAFSGVDEQDVID 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            +     H  IC+    S L     +      +   +T FR      LV+    S PV  
Sbjct: 119 KIRSDFPHLTICQREVRS-LFALDDLPFSLENLPGTFTKFR-----KLVEKLPVSKPVAT 172

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAI 239
           +    P+                  +F  GEQ  L H  + F       Y + R+ +  +
Sbjct: 173 VSSLPPIPEGLALPTLRLIGDGKSYLFNGGEQAGLEHCQQYFSSISASDYKQTRNGLDGM 232

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           + +++ SP+L+ G LSP+     L     + +       +    EL+WRE++      Y 
Sbjct: 233 EYSTKFSPWLAHGCLSPKVICAMLSRY--EHVNGANDSTYWIYFELLWREYFYWYARKYK 290

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                   I     +  +   H  Q WKQG T FPI++A M QLN  G+M NR R + AS
Sbjct: 291 HQLFRFGGIRNQVPLT-SFYGHRFQQWKQGETPFPIVNACMHQLNETGYMSNRGRQLVAS 349

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
            LV +L +DWR G  YF SQL+D D+ASN G WQ+ A  G D     R FN   Q + +D
Sbjct: 350 CLVHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLAGVGADPRGA-RQFNLKKQTEIYD 408

Query: 420 PQGTFIRHW 428
           P   FI  W
Sbjct: 409 PNMAFINRW 417


>gi|269104335|ref|ZP_06157031.1| deoxyribodipyrimidine photolyase single-strand-specific
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268160975|gb|EEZ39472.1| deoxyribodipyrimidine photolyase single-strand-specific
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 436

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 109/429 (25%), Positives = 176/429 (41%), Gaps = 20/429 (4%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFI 61
           M   L   +NDLR+ DN AL  A    D  ++ V+     Q  +     H   A +  F+
Sbjct: 1   MKTGLYLFQNDLRLHDNLALLNATTQCDRLLL-VYCLPYHQANRYPYHIHNYGALRLQFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SL Q+ + L               +  +  L     Q  +  +  + Q    E +  +
Sbjct: 60  LQSLHQLHQQLQDLEQELLV----FLEHPLHILPQLISQYDIHTIISSEQVGYYENQTWQ 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L +R  + +  K +    LL    +     ++   ++ FR+ +    +       P  +
Sbjct: 116 TLNQRYPY-IEFKQWPTHTLLHKEQLPFDLNKLPSTFSQFRRQVEHIEL---TPLTPYIS 171

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQR-DIPAI 239
                P   ++I     +        F  GE  A+  L   F  +K   Y E R D+   
Sbjct: 172 HLPPSPNKIAHISILDSFISHPKPSDFIGGEATAISHLTAYFKSDKASRYKETRNDLDGW 231

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +++ SP+L+ G LS ++    L +    +   P S    +  EL+WRE+++     + 
Sbjct: 232 DYSTKFSPWLAQGCLSAKRVIYELNQYHHQVDETPSSQWIKF--ELLWREYFQWYAHHHQ 289

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                   I  +     +      + W +  T +P+++A MRQL T G+M NR R I AS
Sbjct: 290 QKIFQFKGIKSSSP-HTSFYPERFKRWSESNTPYPLVNALMRQLITTGYMSNRGRQIVAS 348

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
             V +L +DWR G  +F   L+D D+ASN G WQ+ A  G D     R FN   Q + FD
Sbjct: 349 CFVNELELDWRYGAAFFEQHLIDYDIASNWGNWQYLAGVGADPKG-NRHFNLDKQTELFD 407

Query: 420 PQGTFIRHW 428
           PQG FI  W
Sbjct: 408 PQGQFITKW 416


>gi|119713707|gb|ABL97757.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
           EB0_41B09]
          Length = 424

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 108/434 (24%), Positives = 192/434 (44%), Gaps = 26/434 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIYAS 64
            + W RNDLR+ DN +L  A  +SD +++ V++         +W    +   +  ++   
Sbjct: 3   SIYWFRNDLRVIDNLSLNEAIESSD-EILFVYMQDVQSFKDTEWGFSRMGPHRKLYLSQG 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +Q+ LS  G    Y+     DD+++ L     +  + +++        E+ ++  L 
Sbjct: 62  LNALQEKLSNYGHSLNYY----LDDTVDGLLKLVEKFHIDRIYCESIDSHEELDQEIRLR 117

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
               H+V   S+  S L     I  +   +  V+T FRK +    V+    SL    I  
Sbjct: 118 ---GHKVDLYSYYQSGLFLNDQIPFNLNDLPDVFTKFRKEIESREVKPIKPSLINQRINA 174

Query: 185 TGPVTPSN-------IPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQRD- 235
              +              +    F   +  F  GE+     L   F   K   Y + R+ 
Sbjct: 175 IKSIVDEESNEIEMEQMSYPKSSFPISEDRFFGGEEKGFTFLEAYFSSNKPSTYKKTRNE 234

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +  I  +++ SP+L+ G +S RQ ++ L     +L +      +    EL+WRE++R + 
Sbjct: 235 LMGIDFSTKFSPWLASGYISARQVYDFLL--SYELNVIKNESTYWIFFELLWREYFRLIF 292

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             Y      +  +  +++ + +      + WK+G T    I+A M++L   G++ NR+R 
Sbjct: 293 KKYGKKIFHRYGLGLSDE-KVSHSDENFELWKEGRTASNFINAGMKELKETGFLSNRMRQ 351

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I AS+LV +L  DWR G  +F SQL+D D++SN+  W + A  G D     R FN   Q 
Sbjct: 352 IVASYLVNELSCDWRAGAAWFESQLIDYDVSSNHCNWAYIAGHGTDPRG-GRYFNIQKQK 410

Query: 416 KRFDPQGTFIRHWL 429
             +DP G++ + W 
Sbjct: 411 STYDPYGSYEKLWC 424


>gi|329850702|ref|ZP_08265547.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19]
 gi|328841017|gb|EGF90588.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19]
          Length = 280

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 103/271 (38%), Positives = 142/271 (52%), Gaps = 21/271 (7%)

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
            +F  GE  A   LR+F    +  Y + RD P    TS LSP+L  G +SPR+    L +
Sbjct: 22  SIFKPGEAGARGALRRFLASGLADYEDGRDRPDKDLTSYLSPHLRFGEISPRRILTEL-D 80

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
           + V    +  + A  +  EL+WREF  +++   P +   + F        W       +A
Sbjct: 81  KVVRSTPRLVAPAEKFRKELVWREFNYNILDLQPEL-HTRNFRDDFSTFPWQSSDKDFRA 139

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W +G TG+P++DA M+QL   G+MHNR+RM+ ASFLVK LL+DWR GE++F   LLD D 
Sbjct: 140 WARGETGYPLVDAGMKQLWQTGFMHNRVRMVCASFLVKHLLIDWRRGEQWFWDCLLDADP 199

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           ASN G WQW A  G D+ PYFR+FNP  Q  +FDP   + R +                 
Sbjct: 200 ASNPGNWQWVAGCGADAAPYFRVFNPITQADKFDPDDIYRRKF----------------- 242

Query: 446 WLDKNDLSLNYPLPIVDHKKACHHTLNQYYA 476
             DK   ++ YP PIVDH  A    L+ Y +
Sbjct: 243 --DKPRGTVPYPRPIVDHAFARERALDAYRS 271


>gi|221134513|ref|ZP_03560818.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999]
          Length = 441

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 101/444 (22%), Positives = 178/444 (40%), Gaps = 32/444 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----------QWRQHGISA 55
           M+  L W  +DLR+ DN  L       D ++  ++I               Q+ Q  +  
Sbjct: 1   MNNGLYWFEHDLRLADNLPLQQTIAQID-QLHCIYIFNAADFSTTKKKGAGQFNQRHMGQ 59

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  FI  +L  +Q  L   G     +    + + ++ ++    Q   T +  +    + 
Sbjct: 60  HRYRFIRQALDDLQSQLHTFGQQLHIY----YGEPLDIIEQLNTQFNFTHIGKHFHTGVY 115

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-------- 167
           E      L+ +  ++ I  + +   L     +      +  V++PFR+ + +        
Sbjct: 116 ERNLISALKIQYPNKTIINT-NSYTLYDIDDLPMSIENLPDVFSPFRRKVEKFCEARLPD 174

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC--KE 225
           N +      + V    +   +    +                 GE  A   +  +    +
Sbjct: 175 NALPVSFPPVVVAEQNMPDELPAIQVCDKKLLAKNETVQRLIGGELKAKEQMHHYTYGTQ 234

Query: 226 KVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            +  Y E R+     + +S+LSP+L+ G +SPRQ    + E   +         +    E
Sbjct: 235 ALSEYKETRNGLEGWEFSSKLSPWLAAGCISPRQVAAAITEY--EAQHGANDSTYWLFFE 292

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L+WREF++     +      +  I   +      +  + + W  G T +PII+A MRQL 
Sbjct: 293 LLWREFFQWQQLKHGKALYHRNGIQQ-KSPRGFHNKKVFEDWVNGDTAYPIINACMRQLK 351

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G+M NR R + AS  + +L +DW+ G  YF   L+D D ASN G WQ+ A  G+D   
Sbjct: 352 YTGFMSNRGRQLVASCFIHELGLDWQYGAAYFEEALIDFDPASNWGNWQYLAGVGSDPRG 411

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428
             R FN   Q + +DP G FI +W
Sbjct: 412 C-RQFNLNKQTQTYDPHGEFIGYW 434


>gi|332534683|ref|ZP_08410514.1| deoxyribodipyrimidine photolyase, single-strand-specific
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035895|gb|EGI72377.1| deoxyribodipyrimidine photolyase, single-strand-specific
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 435

 Score =  250 bits (638), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 107/427 (25%), Positives = 187/427 (43%), Gaps = 26/427 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYASL 65
           L WL+NDLR+TDN A+++   +    +  VF+  P  +     +Q      +  F+  SL
Sbjct: 6   LYWLQNDLRLTDN-AIFSDLASQQCALDIVFVINPHWFKNNNYQQKSYGVHKQQFLMQSL 64

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++Q++L ++G      +     + +  L +   +Q + ++ Y+ Q+ + E R+  LL+ 
Sbjct: 65  YELQQALIERGQTLHVLEG----EPVSVLKARINEQNIDEVVYSEQFGLYEQRQINLLKA 120

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                V         L     +     ++ K +TPFRK +        L +LP       
Sbjct: 121 HCP-NVRFTGAQQDTLFKQSDLPFDLSELPKHFTPFRKKVEAATSPISLSTLPNG----- 174

Query: 186 GPVTPSNIPRFFDYPFQAI--DPMFPIGEQNALHILRKFCKEK-VYYYVEQRD-IPAIQG 241
             + P  I      P + I  + +   G ++A   L ++        Y   R+ +     
Sbjct: 175 --LLPQPITLCAKKPLERIANNGVMHGGFKSAQTHLEQYFSGLLPSTYKITRNELDGFNN 232

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           T++ S +L+ G +S RQ +  ++    + +       +    EL+WRE+++         
Sbjct: 233 TTKFSTWLAFGCVSARQVYKAVEAYEHNQIT--NESTYWIKFELLWREYFKWHALKAGKS 290

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                    T+ +      +   AW  G T +P+++A M +LN  G++ NR R I AS L
Sbjct: 291 LFSFKGQKQTKPLTTFM-PNRFAAWCNGSTPYPLVNAIMNELNATGYISNRSRQIAASCL 349

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           V +L +DWR G  YF  QL+D D+A+N G WQ+ A  G D     R FN   Q  +FDP 
Sbjct: 350 VNELGLDWRYGAAYFEQQLIDYDVAANWGNWQYIAGVGVDPRG-GRHFNIEKQTLQFDPH 408

Query: 422 GTFIRHW 428
             +   W
Sbjct: 409 AVYTNKW 415


>gi|323463244|gb|ADX75397.1| deoxyribodipyrimidine photolyase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 474

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 133/478 (27%), Positives = 212/478 (44%), Gaps = 32/478 (6%)

Query: 9   VHL-VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +HL V L    RI  N  L     + D ++  +++  P +      + ++  + +     
Sbjct: 1   MHLGVILNRVFRINHNPLLDYVITHQD-EIKQLYLILPIEDLSDAATVKREDYHHV---- 55

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLLE 124
               +         H    +    + LD+      ++ +   +    Y         + +
Sbjct: 56  ----VKGFVSTLIKHNIHPYIVDYKNLDTLANALSLSHVLMAKDIMSYHRASYDYPHMKK 111

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +  +H +       +    P    N   Q Y+++T F KA  Q+L     +S  +  +  
Sbjct: 112 RFEKHHISVIGQRVNHYFQPSKTFNQQHQPYQIFTYFYKANRQHLAHTPQKSTQLKQLAQ 171

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 +     FD             E  A      F   ++  Y +  D       S 
Sbjct: 172 YAAKGMNQSDLKFDKHTDE--------EACARQSWNHFLNHEITLYSQLADDITRNNISG 223

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ G+L  R+  N L E +       ++   S++ EL++REFY  LM  YP     
Sbjct: 224 LSRYLAYGLLDIREVINHLLEGY----DSDENSYESFIRELMFREFYYVLMTQYPDAAT- 278

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F      +EW++     +AWK G TG+PIIDAAM++L   G+MHNRLRMI + FL K 
Sbjct: 279 QSFSVKYRNMEWSERQSHFEAWKNGETGYPIIDAAMKKLLRTGYMHNRLRMIVSQFLTKH 338

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L ++W  GE +F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD  G F
Sbjct: 339 LFMNWTWGEAHFRRYLIDYDNASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDAMGDF 398

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476
           I+  L  L +V  +YIH P  ++          +  +YP  IV+HK++  + + Q+  
Sbjct: 399 IKEQLQILKDVKPKYIHNPSQYVTAIQQNHQIKIGEDYPKAIVNHKESRDYVMQQFKQ 456


>gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica]
          Length = 377

 Score =  249 bits (637), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 89/385 (23%), Positives = 149/385 (38%), Gaps = 31/385 (8%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      SD  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAIHWFRKGLRLHDNPALKECIQGSDT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       + ++++L      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWKISRLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LASEAAVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITA 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T PV+  +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVMGKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             +R           T+ LSPYL  G LS    + +L + +  ++ K  S   S   +L+
Sbjct: 233 NFERPRMNANSLLASTTGLSPYLRFGCLSCCLFYFKLTDLY-KMVKKNSSPPLSLYGQLL 291

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   
Sbjct: 292 WREFFYTAATNNPRFDKMEG-NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQE 350

Query: 347 GWMHNRLRMITASFLVK-DLLVDWR 370
           GW+H+  R   A FL + DL +  R
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISGR 375


>gi|329894043|ref|ZP_08270028.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma
           proteobacterium IMCC3088]
 gi|328923215|gb|EGG30535.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma
           proteobacterium IMCC3088]
          Length = 431

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 114/426 (26%), Positives = 188/426 (44%), Gaps = 24/426 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+WL+NDLR+ DN     A   S+  ++  +          G+ A+++ F+  +L  ++
Sbjct: 3   TLLWLQNDLRLADNAGFQLASQASELLIVYCWPKPRPWCNLTGLGAQRTRFLSETLEHLR 62

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             LS+ G         +     + L     +  +  L  +R    NE    K L+  L  
Sbjct: 63  HQLSELGQDVFV----SVQHPEQVLPLMIEELGIEHLITSRPQAYNESNSLKALQDALDC 118

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT---- 185
            V       + L     +      + K +TPFRK +    +   L +      ++T    
Sbjct: 119 NVSVTR--GNTLFDEDDLTFDLADLPKHFTPFRKKMEAQPIAEPLATPKQLPPKITEVRY 176

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRD-IPAIQGT 242
           GP   +N      +P++        GEQ AL  ++ +  ++     Y + R+ +  +   
Sbjct: 177 GPTPSNNTRPHPTFPYR-------GGEQEALRRIKHWVFDRQAIATYKQTRNALDGLDNY 229

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSP+L+ G +SPR   + ++    ++        +    EL+WREF+    A    V 
Sbjct: 230 SALSPWLATGAVSPRTILHHVQRFENEVT--ANESTYWVFFELLWREFFY-WRAQIDGVH 286

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           +  P+    +K     D      W +G T +P+++A M QL   G+M NR R I AS L+
Sbjct: 287 LFLPYGVARKKQLRTFDPRQFTRWCRGETNYPLVNALMHQLVRSGFMSNRGRQIAASSLI 346

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            DL VDWR G  +F   L+D D+ASN G WQ+ A  G+D     R FN   Q +++DP+G
Sbjct: 347 HDLGVDWRYGAAFFEKYLIDFDVASNYGNWQYIAGVGSDPRG-GRHFNIDKQTEQYDPKG 405

Query: 423 TFIRHW 428
            FI  W
Sbjct: 406 LFITQW 411


>gi|308049734|ref|YP_003913300.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Ferrimonas balearica DSM 9799]
 gi|307631924|gb|ADN76226.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
           [Ferrimonas balearica DSM 9799]
          Length = 435

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 107/429 (24%), Positives = 175/429 (40%), Gaps = 23/429 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61
           M   L+W R+DLR+ DN AL  A    +A ++ ++   P       W+   +      FI
Sbjct: 1   MKRALLWFRHDLRLDDNPALLRAAQAKEA-LLCLYCIEPRWFVADNWQSRRVGDHPWRFI 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             SLL +   L   G            D    +        + KL     +   E R+  
Sbjct: 60  SESLLDLANRLEALGQQLVIR----IGDPNTLIPGLMRNHWIDKLICTAPFGEEERRQYL 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L++ +     C+ +    L     +     ++   ++ FR    + + + + R L  P 
Sbjct: 116 ALKQEVGEH-RCEVWQSHTLFTLEQLPFALDELPPTFSQFR----RRVQRLEWRPLYPPV 170

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYYYVEQRD-IPAI 239
             L  P+  ++            +P +  G+  A   L  +       +Y + R+ +   
Sbjct: 171 TELPKPLALTSETPPP--VSTPPNPQYQGGQTAAEAHLAHYLAGAAPKHYKQTRNALDDW 228

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +++LSP+L+ G LS R    +L  E  +              EL+WRE+++ L   + 
Sbjct: 229 SSSTKLSPWLAQGCLSARTAVAQL--EAYEAQHGANESTEWIQVELLWREYFQWLALAHG 286

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                        +            W QG T +PI++AAM QLN  G++ NR R + AS
Sbjct: 287 HRLFAFTGTSGVRR-PCCFYPERFARWCQGQTPYPIVNAAMNQLNATGFLSNRARQLVAS 345

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
            LV +L +DWR G  YF  QL+D D+A N G WQ+ A  G D   + R F+   Q   +D
Sbjct: 346 ALVHELGLDWRYGAAYFQQQLIDHDVACNYGNWQYLAGVGADPRGW-RHFDLDKQTALYD 404

Query: 420 PQGTFIRHW 428
           P G F+R W
Sbjct: 405 PDGAFVRQW 413


>gi|297197474|ref|ZP_06914871.1| deoxyribodipyrimidine photolyase [Streptomyces sviceus ATCC 29083]
 gi|297146740|gb|EDY60352.2| deoxyribodipyrimidine photolyase [Streptomyces sviceus ATCC 29083]
          Length = 321

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 109/334 (32%), Positives = 171/334 (51%), Gaps = 15/334 (4%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
           ++      + V+TP+ +   Q  ++  L +     + +   V    +P   D        
Sbjct: 2   VVPAGSDHFAVFTPYFRRWSQERLRDPLGAP--RTVTVPDGVGSEPLPSRDDLS-GLSAG 58

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           +   GE      L  + +  +  Y +++D  A   TS+LSP+L  G LSP +  +R +  
Sbjct: 59  LAAGGETEGRRRLAVWLRSGLAAYEDRQDDLAGDATSRLSPHLHFGTLSPVELVHRARRA 118

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
                     GA +++ +L WR+F+R ++A  P+                      ++AW
Sbjct: 119 -------GGPGAEAFVRQLAWRDFHRQVLAARPAAAGADYRTQHDRWRSERTAGDDIEAW 171

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           K+G TG+PI+DAAMRQL   GWMHNR R++TASFL K L VDWRIG  +F+  L+DGDLA
Sbjct: 172 KEGRTGYPIVDAAMRQLRHEGWMHNRGRLLTASFLTKTLYVDWRIGARHFLDLLVDGDLA 231

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           +N   WQW A TG D+ P  R+ NP  Q KR+DP GT++R W+PEL  +    +H P   
Sbjct: 232 NNQLNWQWMAGTGTDTRP-NRVLNPVAQAKRYDPDGTYVRRWVPELAALEGPAVHEPWKL 290

Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
              +  +L+YP P+V+  +     L ++  A+ +
Sbjct: 291 RGLDRAALDYPDPLVELSEG----LARFKRARGR 320


>gi|145605082|ref|XP_365369.2| hypothetical protein MGG_02071 [Magnaporthe oryzae 70-15]
 gi|145012947|gb|EDJ97588.1| hypothetical protein MGG_02071 [Magnaporthe oryzae 70-15]
          Length = 614

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 115/532 (21%), Positives = 184/532 (34%), Gaps = 78/532 (14%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA     A +  +F   P    +      +  ++      +  
Sbjct: 7   IYWFRTDLRLHDSPALQAALDLDPAVLWPIFTWDPHYVYRSRGGLNRWQYLLDCQNDLSA 66

Query: 71  S---LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           S   L+ +  +F   +                  +VT L + +  +    +RD++++K  
Sbjct: 67  SITNLNPRSKLFVLREAPQ-----SLFPKLFKAWKVTHLVFEKDTDAYARQRDEVVKKAA 121

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           Q   +   +     L    +I+           P         V A + S+P P      
Sbjct: 122 QAAGVKVITRYGRTLWDSDAIVKANGG-----EPTMSMARLRTVGAKVGSIPRPIPAPKA 176

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-AIQGTSQL 245
              P  +P  F+     +   +           R   KEK Y  +   +   AI+   +L
Sbjct: 177 LPDPGEMPLDFNLDLPDVGQDY-------NAKWRSEGKEKAYGAIAGPNGDFAIETLEEL 229

Query: 246 ------SPYLSIGVLSPRQCWNRLK-----EEFVDLLIKPKS-GAFSWLNELIWREFYRH 293
                 +PY     L+ R+    ++     + +     K  S    S   +L++R+ Y  
Sbjct: 230 GYPPATTPYKGGESLALRELDAIIENQDTVDAYNQAKKKGASLPPESLTGQLLFRDMYFA 289

Query: 294 LMAFYPSVCMGKPFIPWTEKIEW-------------------------NKDSHLLQAWKQ 328
             A                 I W                          +     + W+ 
Sbjct: 290 AQAAIGPCFSQTAGNAHCRFIPWHLPSHVEDNAVSGQVLRKFEYEVDSEQAESWFRRWEA 349

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLAS 387
           G TGFP IDA MRQL   GW+H+  R   A FL +    V W  G + F   LLD + A 
Sbjct: 350 GQTGFPWIDALMRQLRVEGWIHHLGRHSVACFLTRGGCYVSWERGLDVFEELLLDHEPAC 409

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N G WQW  S       YFR ++P   GK++DP GTFIR W+PEL ++  +YI+ P    
Sbjct: 410 NAGNWQW-LSCTAFFSQYFRCYSPISFGKKWDPDGTFIRKWVPELASLDKKYIYEPWKAP 468

Query: 448 DKN-----------------DLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           +                     S  Y  P+ D  +     +     A    L
Sbjct: 469 EAELRRAGVVMVSEGGVGGGGASGTYFTPMFDFDERRRVCMRLMKQAYDAGL 520


>gi|240116558|ref|ZP_04730620.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           PID18]
 gi|260439681|ref|ZP_05793497.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           DGI2]
 gi|268602227|ref|ZP_06136394.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18]
 gi|291042923|ref|ZP_06568664.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2]
 gi|268586358|gb|EEZ51034.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID18]
 gi|291013357|gb|EFE05323.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae DGI2]
          Length = 432

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 182/465 (39%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA     + VI ++I   E         R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+++GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLARRGIPLY------TAASPAGLVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     +       +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPGNGTAHTDFNRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236
            +        P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GSDLFAAYRQPFPENLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQA-ASYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS+G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKNTSLMGAYLSVGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +             +    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------ADDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W+ AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              R DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|240113824|ref|ZP_04728314.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           MS11]
 gi|268599892|ref|ZP_06134059.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11]
 gi|268584023|gb|EEZ48699.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae MS11]
          Length = 432

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 181/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA     + VI + I   E         R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGICIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+++GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLARRGIPLY------TAASPAGLVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     +       +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236
            +        P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GSDLFAAYRQPFPENLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQA-ASYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS+G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKNTSLMGAYLSVGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +             +    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------ADDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W+ AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              R DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|23954322|emb|CAC82537.1| Cryptochrome 2 [Oryza sativa Indica Group]
          Length = 433

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 88/262 (33%), Positives = 136/262 (51%), Gaps = 11/262 (4%)

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
            +L +F    +  Y +         TS LSPYL  G +S R+ +  ++ + +    +  S
Sbjct: 1   KMLEEFVSHGLLEYSKHGMKVEGATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTS 60

Query: 277 GAFS----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
            A      ++  +  RE+ R+L   +P     K  +   +   W  D    ++W+QG TG
Sbjct: 61  EAEESIHFFMRSIGLREYSRYLCFNFP-FTHEKSLLGNLKHYPWKVDEERFKSWRQGMTG 119

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P++DA MR+L   GW HNR+R+I +SF VK LL+ W  G +YF   LLD DL S+  GW
Sbjct: 120 YPLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGW 179

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL----- 447
           Q+ + +  D     R+ NP +QG+++DP G ++R W+PEL  +PT++IH P         
Sbjct: 180 QYISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILE 239

Query: 448 -DKNDLSLNYPLPIVDHKKACH 468
               +L  NYP PIVD   A  
Sbjct: 240 VAGVELGFNYPKPIVDLHIARE 261


>gi|118594165|ref|ZP_01551512.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium
           HTCC2181]
 gi|118439943|gb|EAV46570.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium
           HTCC2181]
          Length = 426

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 112/434 (25%), Positives = 190/434 (43%), Gaps = 26/434 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYAS 64
            + W RNDLR+ DN AL +A +NSD  ++ V I         +W+       +  F+Y  
Sbjct: 3   SIYWFRNDLRLEDNAALNSALNNSD-HILFVHIDDDMNDAECEWQFSRRGQHRKIFMYQG 61

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++Q +L   G    +H       +         +  +  ++        E  +++L++
Sbjct: 62  LEELQLNLKSYG----HHLNRFVGKTNLIFQELINRHHINSVYCESINAFEEQAQERLIK 117

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +     V   S+  S +  P  +      +  V+T FRK +    +  +        I+ 
Sbjct: 118 EL---GVNLYSYYQSSMYMPHQLPFDIKDLPDVFTHFRKNIETTGIVPEEPIALSGQIKN 174

Query: 185 TGPVTPSNIPRFFDY-------PFQAIDPMFPIGEQNA-LHILRKFCKEKVYYYVEQRD- 235
           T P+  S      +         F   D  F  GE+ A LHI + F  +    Y   R+ 
Sbjct: 175 TIPILDSKTNLTQELTEDYSQSSFPISDKKFKGGERTAQLHIDQYFQSDYPNSYKYSRNN 234

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           +  I+ +++ SP+LS+G +S  Q ++ LK    +         +    EL+WR+++R L 
Sbjct: 235 LMGIECSTKFSPWLSLGFISANQIYSALKRY--EQRNSANDSTYWIYFELLWRDYFRFLF 292

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
             Y  +   K  +  + K  +  +      WK G T    I+A + +LN  G++ NR+R 
Sbjct: 293 MKYGKIFFYKNGLGLSNK-SFQHNEEKFNEWKNGKTPSSFINAGISELNQTGFISNRMRQ 351

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           I AS+LV +L  DWR G  +F  QL+D D+ SN G W + A  G D     R FN   Q 
Sbjct: 352 ILASYLVNELACDWRAGAAWFEHQLIDYDVYSNYGNWSYIAGVGTDPRG-GRHFNVDKQK 410

Query: 416 KRFDPQGTFIRHWL 429
             +DP G++ + W+
Sbjct: 411 NTYDPDGSYEKEWI 424


>gi|296314842|ref|ZP_06864783.1| deoxyribodipyrimidine photolyase [Neisseria polysaccharea ATCC
           43768]
 gi|296838342|gb|EFH22280.1| deoxyribodipyrimidine photolyase [Neisseria polysaccharea ATCC
           43768]
          Length = 430

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 117/470 (24%), Positives = 183/470 (38%), Gaps = 59/470 (12%)

Query: 1   MKATTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA 55
           M +  A +V      LVW R +LRI DN AL AA       +I ++I   E         
Sbjct: 1   MPSEHAATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAETDN-----P 54

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
           R++ F   S  ++ + L+ +GI          + S   L    ++  +  +  +  +   
Sbjct: 55  RRAAFYRQSAAELAQGLAGRGIPLY------TEVSPAGLVRLAVRLNIRAVIADESHTFA 108

Query: 116 EVRRDKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +   D  L   L    I  +F +D  +     +       +  +  +RKA +    +   
Sbjct: 109 DKLTDNALWHELDKHGIRLTFVNDRSVFDQTDLPPDNGTAHTDFNRYRKAWLDCFSKQP- 167

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYV 231
              P  +   +    P         P    D +F     GE  A    R+F ++    Y 
Sbjct: 168 ---PAGSDIFSTYRQPFPENLPAPQPAALSDSIFLPQNGGETAAWRQWRRFLEQA-DSYS 223

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
             +D P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+
Sbjct: 224 VLKDFPSRKNTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFF 273

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGW 348
             L   +             +    + +      L  W+QG TG PIIDAAMR L+  G 
Sbjct: 274 LQLALQH------------ADDGPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGS 321

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           +H  LR ++A F    L +  R GE +F  QL D D A N G W+ AAS           
Sbjct: 322 LHPALRRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHTYP------ 375

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
            +      + DP GTF+R  +PEL ++P   IH P       D +  YP 
Sbjct: 376 -DIAAAAHKTDPDGTFVRRHIPELAHLPAAVIHTPWRAAGSID-THGYPA 423


>gi|319893699|ref|YP_004150574.1| Deoxyribodipyrimidine photolyase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317163395|gb|ADV06938.1| Deoxyribodipyrimidine photolyase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 474

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 131/478 (27%), Positives = 212/478 (44%), Gaps = 32/478 (6%)

Query: 9   VHL-VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +HL V L    RI  N  L     + D ++  +++  P +      + ++  + +     
Sbjct: 1   MHLGVILNRVFRINHNPLLDYVITHQD-EIKQLYLILPIEDLSDAATVKREDYHHV---- 55

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ---YEINEVRRDKLLE 124
               +         H    +    + LD+      ++ +   +    Y         + +
Sbjct: 56  ----VKGFVSTLIKHNIHPYIVDYKNLDTLANALSLSHVLMAKDIMSYHRASYDYPHMKK 111

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +  +H +       +    P    N   Q Y+++T F KA  Q+L     ++  +  +  
Sbjct: 112 RFEKHHISVIGQRVNHYFQPSKTFNQQHQPYQIFTYFYKANRQHLAHTPQKNTQLKQLAQ 171

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                 +     FD             E  A      F   ++  Y +  D       S 
Sbjct: 172 YAAKGMNQSDLKFDKHTDE--------EAYARQSWNHFLNHEITLYSQLADDITRNNISG 223

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LS YL+ G+L  R+  N L E +       ++   S++ EL++REFY  LM  YP     
Sbjct: 224 LSRYLAYGLLDIREVINHLLEGY----DSDENSYESFIRELMFREFYYVLMTQYPDAAT- 278

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           + F      +EW++     +AWK G TG+PIIDAAM++L   G+MHNRLRMI + FL K 
Sbjct: 279 QSFSVKYRNMEWSERQSHFEAWKNGETGYPIIDAAMKKLLRTGYMHNRLRMIVSQFLTKH 338

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L ++W  GE +F   L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD  G F
Sbjct: 339 LFMNWTWGEAHFRRYLIDYDNASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDAMGDF 398

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYA 476
           I+  L  L +V  +YIH P  ++          +  +YP  I++HK++  + + Q+  
Sbjct: 399 IKEQLQILKDVKPKYIHNPSQYVTAIQQNHQIKIGEDYPKAIINHKESRDYVMQQFKQ 456


>gi|194099599|ref|YP_002002730.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           NCCP11945]
 gi|240014955|ref|ZP_04721868.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           DGI18]
 gi|240017403|ref|ZP_04723943.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           FA6140]
 gi|240118782|ref|ZP_04732844.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           PID1]
 gi|240122024|ref|ZP_04734986.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           PID24-1]
 gi|254494581|ref|ZP_05107752.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 1291]
 gi|268604493|ref|ZP_06138660.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1]
 gi|193934889|gb|ACF30713.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513621|gb|EEH62966.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 1291]
 gi|268588624|gb|EEZ53300.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID1]
          Length = 432

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 182/465 (39%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA     + VI ++I   E         R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+++GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLARRGIPLY------TAASPAGLVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     +       +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236
            +        P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GSDLFAAYRQPFPENLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQA-ASYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS+G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKNTSLMGAYLSVGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +             +    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------ADDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W+ AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              R DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|59802028|ref|YP_208740.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA
           1090]
 gi|239999799|ref|ZP_04719723.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           35/02]
 gi|240081545|ref|ZP_04726088.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           FA19]
 gi|240124322|ref|ZP_04737278.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           PID332]
 gi|240126533|ref|ZP_04739419.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128995|ref|ZP_04741656.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268595609|ref|ZP_06129776.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02]
 gi|268597641|ref|ZP_06131808.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19]
 gi|268682948|ref|ZP_06149810.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332]
 gi|268685113|ref|ZP_06151975.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679]
 gi|268687375|ref|ZP_06154237.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035]
 gi|293398069|ref|ZP_06642274.1| deoxyribodipyrimidine photo-lyase [Neisseria gonorrhoeae F62]
 gi|59718923|gb|AAW90328.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA
           1090]
 gi|268548998|gb|EEZ44416.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae 35/02]
 gi|268551429|gb|EEZ46448.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae FA19]
 gi|268623232|gb|EEZ55632.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae PID332]
 gi|268625397|gb|EEZ57797.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-92-679]
 gi|268627659|gb|EEZ60059.1| deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae SK-93-1035]
 gi|291611332|gb|EFF40402.1| deoxyribodipyrimidine photo-lyase [Neisseria gonorrhoeae F62]
 gi|317165088|gb|ADV08629.1| putative deoxyribodopyrimidine photolyase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 432

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 182/465 (39%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA     + VI ++I   E         R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+++GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLARRGIPLY------TAASPAGLVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     +       +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRSVFGKTDLTPDNGTAHTDFNRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236
            +        P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GSDLFAAYRQPFPENLPAPPPAALSDGIFLPQNGGETAAWRQWRRFLEQA-ASYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS+G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKNTSLMGAYLSVGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +             +    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------ADDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W+ AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              R DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|323493058|ref|ZP_08098192.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
 gi|323312706|gb|EGA65836.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
          Length = 449

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 113/441 (25%), Positives = 177/441 (40%), Gaps = 23/441 (5%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWR---QHGISARQSHFIY 62
           + L W  NDLR+ DN  L  A    D ++I ++     +P   R   Q   S  +  F+ 
Sbjct: 5   IGLYWFTNDLRVHDNPLLSKAAAEVD-QLICLYCYPSVSPYLARYSQQAKWSEPKLQFLD 63

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           ASL  +  SL+             +      +        V+ L+ +     +E      
Sbjct: 64  ASLHCLNLSLNALNQRLLVVDSHPYH----AIKDLVYGLGVSHLYVDAVAGCDEQSIIDS 119

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           L+       + +  +   L     +      +   +T FRK +   +V      LP+  +
Sbjct: 120 LKAEFDALDVAQK-EVRTLFTLEQLPFELSALPDTFTQFRKQVEPLVV-----PLPISWV 173

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQ 240
           +    +  +               +F  GEQ  L H  R F       Y E R+ +  + 
Sbjct: 174 KRLPSLPDTLSLPGISLTHHGGSALFEGGEQAGLAHCRRYFSSACPSEYKETRNALDGLD 233

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            +++ SP+L+ G LS +  +  LK    + L       +    EL+WRE++      Y  
Sbjct: 234 YSTKFSPWLAHGCLSAKTIYAMLKRY--ERLNGANESTYWIYFELLWREYFYWYARRYRQ 291

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                  I     +  +  +H  Q WK G T F I++A M QLN  G+M NR R + AS 
Sbjct: 292 KLFRFGGIRNQPPLT-SFYAHRFQQWKNGQTPFAIVNACMHQLNQTGYMSNRGRQLVASC 350

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           L+ +L +DWR G  YF SQL+D D+ASN G WQ+ A  G D     R FN   Q + +DP
Sbjct: 351 LIHELGLDWRYGAAYFESQLIDYDVASNWGNWQYLAGVGADPRG-SRQFNLEKQTQMYDP 409

Query: 421 QGTFIRHWLPELNNVPTQYIH 441
              FI  W    +  P   + 
Sbjct: 410 YQEFIDRWQGRCDASPLDSVD 430


>gi|149925501|ref|ZP_01913765.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
 gi|149825618|gb|EDM84826.1| deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
          Length = 453

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 102/489 (20%), Positives = 188/489 (38%), Gaps = 50/489 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSD--AKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + ++W + DLR++D+  L+ A  N+     V+ ++I  P Q      + +   F++  L 
Sbjct: 1   MQVLWFKRDLRLSDHMPLFEAMRNAKHHGLVLPLYIHEPSQILDAHTARQHQLFVHECLD 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125
            +Q+  ++ G            ++++ L +   Q + T L+ +++       +RD+ +  
Sbjct: 61  DLQQQFAKVGGYLH----EELGEAVDVLAALHAQFKFTHLWAHQETTQFAQYQRDRAVAA 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +   +         LP  ++           T   +A  + +     R+L        
Sbjct: 117 WCKSEGVVFHE-----LPQNNVQRARGNKADFQTYLNRAAQEEIKNPAGRNLQAFFAPRP 171

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK-EKVYYYVEQRDIP--AIQGT 242
            PV         +   +        G   A  +  KF    K+  Y      P  A  G 
Sbjct: 172 PPVL--KRCNVPNAAGEDKPLRMKGGRTQARAVAAKFFTPAKLKSYPFSISSPLKAWNGC 229

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS--------GAFSWLNELIWREFYRHL 294
           S+LSPYL+ GV+S R+   +L      +  +  S         A  +++ LIWR+ Y   
Sbjct: 230 SRLSPYLAYGVVSDREVLQKLNALVNTVHGQGDSVLISKVEDAARFYVDRLIWRQGYLQQ 289

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +  +  +        +        +   L AW+ G TGF  IDA    L   GW++ R R
Sbjct: 290 LENHTGLETD----AFYGDEPAEVNQEFLNAWQHGRTGFAYIDACQHFLQQTGWLNMRAR 345

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
               SF    L + W+    Y   Q LD + A + G  + A+ T + S     +++P  Q
Sbjct: 346 ATLVSFACVQLGLPWQPVALYLAQQFLDFEPAIHYGQVRIASGTSHFSQ--MLVYDPLKQ 403

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
               DP+G F++ WLP                      +  YP PI+D+ ++      + 
Sbjct: 404 QAEQDPKGEFVKRWLP-------------------GYGTAGYPAPIIDNAESLKQGKARL 444

Query: 475 YAAKKQSLL 483
           +A ++  LL
Sbjct: 445 HAMRQNRLL 453


>gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula]
          Length = 517

 Score =  246 bits (628), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 116/482 (24%), Positives = 191/482 (39%), Gaps = 39/482 (8%)

Query: 9   VHLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ---SHFIYAS 64
             + W R D LR+ DN A   A    D    AVFI  P     +     Q     F+  +
Sbjct: 21  TTVHWFRLDALRLHDNPAFVDAVKT-DGNFKAVFIIDPWFNANYNNGGPQVNVWRFLLEA 79

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +   L +K   +       +      L     +  V K+ +      +E  +   + 
Sbjct: 80  LHDLDSRLQKK--PYCARLNVLYGQPTMILPELYKKWNVKKITFQASQVSSESMKHDGII 137

Query: 125 KRL--QHRVICKSFDDSVLLPPGSILN-HALQMYKVYTPFRKALIQNLVQADLRSLPVP- 180
           K L  Q  V   S+    L  P +++  +  ++   Y  FR+ +      A     P P 
Sbjct: 138 KILSEQQNVQAVSYFSHTLYDPANVIALNNGRVPLSYKEFRRLMPLMGKPASPIPEPHPM 197

Query: 181 ------AIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYY 230
                       P     IP+  D        +    +  GE  AL  L  FC  +    
Sbjct: 198 SLCMKAPPSELVPEPEGKIPKLQDLGLSDEFALYTNSWVGGETEALSRLSSFCSRRAAIP 257

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            E       + T  LSPY+  G LS RQ +++L + F     K +         L+ REF
Sbjct: 258 NEPVHWLMSKDT--LSPYIKFGCLSVRQLFSQLLQ-FASTSSKGQELFELLTKNLLLREF 314

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              + +  P   + +       ++ W  ++  +QA++ G TG+P IDA +RQ+   GW H
Sbjct: 315 AFLVGSSSPKFDVMEG-NSLCIQLPWESNNVFIQAFRNGQTGYPWIDAIIRQIRQDGWAH 373

Query: 351 NRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
              R   A FL +  L + W +G+E+F   ++D +L  ++  W   +S           +
Sbjct: 374 FLARQSIAVFLTRGYLWISWVLGKEFFQEFMIDFELPVSSVCW-MQSSCSGFFCTQIESY 432

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH---------SWLDKNDLSLNYPLPI 460
           +P + GK+ D  G +I+ ++PEL + P++Y+H P          SWL   +    YP PI
Sbjct: 433 DPCLVGKQIDTDGHYIKTYVPELKDFPSEYVHQPWKCSSLHTEASWLCDREQ---YPKPI 489

Query: 461 VD 462
           +D
Sbjct: 490 ID 491


>gi|327271582|ref|XP_003220566.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
          Length = 438

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 97/329 (29%), Positives = 147/329 (44%), Gaps = 21/329 (6%)

Query: 170 VQADLRSLPVPAIRLTGPVTPSNIPRFF------DYPFQAID-PMFPIGEQNALHILRKF 222
            +  +  L     +   P+   ++   +      D          +  GE   L  L + 
Sbjct: 72  PEMPVEDLTAENSQKLCPLPEEDLDECYRVPLPEDLGISKEHLSPWRGGETTGLQRLEEH 131

Query: 223 CKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            K + +   + + R IP   +  T+ LSPY S+G LS R  + RL + +           
Sbjct: 132 MKNQGWIAKFTKPRTIPNSLLPSTTGLSPYFSLGCLSVRMFFYRLSKIYAQSK-NHSLPP 190

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S   +L+WREF+  + +  P+        P   +IEW +D+  L  WK   TGFP IDA
Sbjct: 191 VSLQGQLLWREFFYTVASATPNFTKM-VGNPICLQIEWYEDAEKLHKWKTAQTGFPWIDA 249

Query: 339 AMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W  S
Sbjct: 250 IMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDSDYSINAGNWMW-LS 308

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------ 451
                  Y RIF P   GKR DP+G +IR +LP L N P++YI+ P +   +        
Sbjct: 309 ASAFFHQYSRIFCPVRFGKRTDPEGHYIRKYLPVLKNFPSKYIYEPWTAPAEAQREAGCI 368

Query: 452 LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +   YP P+V+HK+   + L      +++
Sbjct: 369 IGKEYPFPMVNHKEVSDNNLQLMKQVREE 397


>gi|313200806|ref|YP_004039464.1| cryptochrome, dash family [Methylovorus sp. MP688]
 gi|312440122|gb|ADQ84228.1| cryptochrome, DASH family [Methylovorus sp. MP688]
          Length = 467

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 109/447 (24%), Positives = 182/447 (40%), Gaps = 41/447 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQ-----WRQHGISARQSHFIY 62
           + W R DLR+ D  AL  A   +    + ++ VF+  P +     W    ++  +  ++ 
Sbjct: 29  IFWFRRDLRLHDQVALTWAARQAAHIGSWLLPVFVHDPAESGLTRWGFARMAPHRRAWLT 88

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           +++  +   L   G         + D  +  + +      V         EI       +
Sbjct: 89  SAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALGNPLLV-------CEEIAAPEEQAV 141

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--------ADL 174
           +       V  K+   S L+   ++      +   +T FR AL +  VQ          L
Sbjct: 142 VAALRAAGVKVKTVWQSSLVAVENLPFDPQAVPDTFTTFRHALERGHVQAARPLPSIKQL 201

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAI----DPMFPIG-------EQNALHILRKFC 223
             LP  A+    P   ++         +         FP+G       EQ AL  L+++C
Sbjct: 202 PPLPSHALLNAIPSEVASDGTDHAMASEPWPDDARSAFPLGSSGFDGSEQAALQHLQQYC 261

Query: 224 KEK-VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
           + +  + Y   R+ +  +  +S+ SP+L+ G LS RQ W  ++    +         +  
Sbjct: 262 QRRLPHSYKSTRNGLIGVDYSSKWSPWLATGALSARQAWAAIQA--FEAEHGANESTYWL 319

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
             EL+WR+ +R L   + +           E    + D      W +G TG P IDA MR
Sbjct: 320 WFELLWRDHFRWLHFKHGNRLYRA--RGLGEAPVPSHDPDHFARWCRGETGQPFIDAGMR 377

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   G++ NR+R   AS+L+ DL  DWR G  +F SQLLD D+ SN G W + +  G D
Sbjct: 378 ELAATGYLSNRMRQNVASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYLSGRGTD 437

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHW 428
                R FNP  Q + +D  G++   W
Sbjct: 438 PRQGRR-FNPDKQAQDYDADGSYRALW 463


>gi|224002573|ref|XP_002290958.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972734|gb|EED91065.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 420

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 102/423 (24%), Positives = 174/423 (41%), Gaps = 41/423 (9%)

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK----LFYN 109
             R+  F   ++  ++ +L ++G        +  +       S             +   
Sbjct: 6   GPRRVQFALEAVADLRSNLEKRGSGLVVAVGNPEEILATIATSAVESSGDNGALINVVCQ 65

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKS------FDDSVLLPPGSILNHAL--QMYKVYTPF 161
            +    E+  DK +   L   +  KS         S +  P ++        +   +TPF
Sbjct: 66  EEVCSEELTVDKAIRSSLAKAMKTKSKFNFETVWGSTMYDPETLPFDGGVFGIPDTFTPF 125

Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-------------- 207
           R  + +          P         +  + +P  FD  + A D                
Sbjct: 126 RNKVEKICEIGAPLDCPKDEYL---SLPKNYMPTLFDLGYNAEDIESVSSVDSRTALPVN 182

Query: 208 FPIGEQNALHILRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           +  GE  AL  ++ +  +K     Y + R+ +     +++ +P+L++G +SPR    R  
Sbjct: 183 YRGGETFALQRVKDYIWDKNLLKVYFDTRNGMIGSDYSTKFAPWLALGNVSPRYIA-REC 241

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK----PFIPWTEKIEWNKDS 320
             + +  ++ KS  +  + EL+ R+ ++     +                +E+ +W  D 
Sbjct: 242 SRYEEQRVQNKS-TYWVVFELLIRDHFKFFAKKHGDKVFYLTGTIGKQRGSERKKWGMDR 300

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
             +QAW+ G TGFP++DA MR+L   G+M NR R   ASFL  D+ +DWR G EYF   L
Sbjct: 301 KKIQAWQDGMTGFPLVDANMRELAATGFMSNRGRQNVASFLTIDMNMDWRYGGEYFEETL 360

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           LD D+ SN G W  AA      +     FN   Q K +D  G ++R W PEL NVP +Y+
Sbjct: 361 LDYDVHSNWGNWCSAAGMTGGRLNR---FNIVKQSKDYDFGGEYVRLWCPELKNVPDKYV 417

Query: 441 HAP 443
           H+P
Sbjct: 418 HSP 420


>gi|330447966|ref|ZP_08311614.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492157|dbj|GAA06111.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 441

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 109/426 (25%), Positives = 183/426 (42%), Gaps = 17/426 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFIYAS 64
            L WL  DLR+ DN+  +    +    ++ V+   P+      ++   +   +  F+  S
Sbjct: 5   ALYWLTQDLRLHDNEIFHQ-VRDHADNLLCVYFIEPQWQTFNRYQLKSMGEIRHRFLLQS 63

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  +  +L++ G      Q          L +   Q R+  ++ +R     E ++ + ++
Sbjct: 64  LQTLHSNLTRFGQQLVVVQAEPLLS----LPALIQQHRINVIYRSRHCGWYEQQQWQYIK 119

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           +   H +     D   L     +  H   M   Y+ FRK + ++         P      
Sbjct: 120 QYFPH-LRFVEVDTHTLYSQQQLPFHLSDMPSGYSKFRKLIERDTNVTKPLPQPEYLPPP 178

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL-RKFCKEKVYYYVEQRDIPA-IQGT 242
               +   +     Y     +  +  GE  AL  L + F  +    Y E R+  A  + +
Sbjct: 179 PKMNSSDYLDIGRVYIADNSNVEWQGGENAALMHLKQYFSCDAPANYKETRNALAGWELS 238

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           ++ SP+L+ G LS +     LK+   +  +   S  +    EL+WREF+    A      
Sbjct: 239 TKFSPWLACGSLSAKTIMAALKDY--EQNVTANSSTYWIFFELLWREFF-QWHAHVVGRH 295

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           + +      +++  +      + W  G T +P+++A M+QLN  G+M NR R I AS LV
Sbjct: 296 LYRFSGVQNKRLLTSFYPSRFKQWCSGSTPYPLVNAFMKQLNQTGYMSNRGRQIVASCLV 355

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L +DWR G  YF  QL+D D+ASN G WQ+ A  G DS    R F+   Q + FDP  
Sbjct: 356 NELSLDWRYGAAYFEQQLIDHDMASNWGNWQYIAGVGTDSRDK-RWFDIEKQTRLFDPDH 414

Query: 423 TFIRHW 428
            FIRHW
Sbjct: 415 AFIRHW 420


>gi|260778085|ref|ZP_05886978.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260606098|gb|EEX32383.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 440

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 111/447 (24%), Positives = 189/447 (42%), Gaps = 32/447 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-------QHGISARQS 58
              V L W   DLRI DN  L+ A    D+ ++ V+   P+  R       +  + + + 
Sbjct: 2   KQKVGLYWFTCDLRIQDNPLLWQASCEVDS-LLCVYCL-PQMDRYLVRYSQEQSLGSERL 59

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+  S+  + +SL   G           D  ++ L+ +     VT  + +    +NE  
Sbjct: 60  AFLQQSVACLSQSLENMGQKLLVFD----DRPLDVLNRFIQDYGVTHFYCDLFSGVNEQS 115

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRS 176
               L + L   + C     + L     +     ++   +T FRK +    +  D  L +
Sbjct: 116 VVDRLSQ-LHSDLTCIQEPVNTLFSQRLLPFTLGELPSTFTQFRKQVEHLPIGVDSSLSA 174

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD 235
           LP P  ++   +             +    +F  GE   L H    F      +Y + R+
Sbjct: 175 LPEPPAQVISTLNME----------EVSCQLFAGGETLGLAHCSGYFATSLASHYKQTRN 224

Query: 236 -IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
            +     +++ SP+L++G LSP++ +  L+E   +         +    EL+WRE++   
Sbjct: 225 ELDGFDFSTKFSPWLAVGCLSPKRIFVLLQEY--EQREGANDSTYWIFFELLWREYFHWY 282

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
              +         +     +  +  S+  Q WK G T +PI++A M QL   G+M NR R
Sbjct: 283 GKLWGRRLFKFSGLKDATPLT-SFYSYRFQQWKHGETQYPIVNACMNQLKATGYMSNRGR 341

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
            + AS L+ +L +DWR G  YF +QL+D D+ASN G WQ+ A  G D     R FN   Q
Sbjct: 342 QLVASCLIHELGLDWRYGAAYFETQLVDYDVASNWGNWQYLAGVGADPRDSRR-FNLAKQ 400

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIH 441
            + +DP   FI  W      +P+ ++ 
Sbjct: 401 TEMYDPDKVFIERWHGNKVIIPSDHVD 427


>gi|153837520|ref|ZP_01990187.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810]
 gi|149749116|gb|EDM59921.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810]
          Length = 445

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 115/444 (25%), Positives = 185/444 (41%), Gaps = 23/444 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
              + L W   DLR+ DN  L  A    D +++ ++     TP      ++  +   +  
Sbjct: 2   KKKIGLYWFTFDLRLHDNLLLVNASSFLD-ELVCLYCRPSVTPFLHHFAQEATLGRARQK 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI ASL ++  +L Q G          +    + L        VT L+ +     +E   
Sbjct: 61  FIDASLCELNDALGQLGQRLWTLDLPPY----QALKYAIQYLGVTHLYADAMAGSDEQSI 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              L+    H VI +    S L     +      + + +T FRK +    +   + +   
Sbjct: 117 LHKLQDEYPHLVIVQHAVRS-LFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDA--- 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              RL      + +P    + F     +F  GE + L H  R F       Y E R+ + 
Sbjct: 173 -PSRLPPTPKDAQLPTLSSFYFDES-ALFSGGEWSGLAHCRRYFSSGLASSYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SPR  +  LK+   +         +    EL+WRE++      
Sbjct: 231 GMAYSTKFSPWLALGCVSPRMIYAMLKQY--EQTQGANDSTYWIYFELLWREYFYWYARC 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y         I     +  +  +H  Q WK G T +PI++A M QL+  G+M NR R + 
Sbjct: 289 YQQRLFRFGGIRNQPPLT-SFYAHRFQQWKNGTTPYPIVNACMHQLDHTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q + 
Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQTQM 406

Query: 418 FDPQGTFIRHWLPELNNVPTQYIH 441
           +DP   FI  W    +  P   + 
Sbjct: 407 YDPNHEFIVRWQGRDSRAPQDVVD 430


>gi|308126141|ref|ZP_05908184.2| cryptochrome dash [Vibrio parahaemolyticus AQ4037]
 gi|308110402|gb|EFO47942.1| cryptochrome dash [Vibrio parahaemolyticus AQ4037]
          Length = 445

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 115/431 (26%), Positives = 182/431 (42%), Gaps = 23/431 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
              + L W   DLR+ DN  L  A    D +++ ++     TP      ++  +   +  
Sbjct: 2   KKKIGLYWFTFDLRLHDNLLLVNASSFLD-ELVCLYCRPSVTPFLHHFAQEATLGRARQK 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI ASL ++  +L Q G          +    + L        VT L+ +     +E   
Sbjct: 61  FIDASLCELNDALGQLGQRLWTLDLPPY----QALRYAIQYLGVTHLYADAMAGSDEQSI 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              L+    H VI +    S L     +      + + +T FRK +    +   + +   
Sbjct: 117 LHKLQDEYPHLVIVQHAVRS-LFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDA--- 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
              RL      + +P    + F     +F  GE + L H  R F       Y E R+ + 
Sbjct: 173 -PSRLPPMPKDAQLPTLSSFYFDES-ALFSGGEWSGLAHCRRYFSSGLASSYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SPR  +  LK+   +         +    EL+WRE++      
Sbjct: 231 GMAYSTKFSPWLALGCVSPRMIYAMLKQY--EQTQGANDSTYWIYFELLWREYFYWYARC 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y         I     +  +  +H  Q WK G T +PI++A M QLN  G+M NR R + 
Sbjct: 289 YQQRLFRFGGIRNQPPLT-SFYAHRFQQWKNGTTQYPIVNACMHQLNHTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q + 
Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLIDYDVCSNWGNWQYLAGVGADPRG-SRQFNLEKQTQM 406

Query: 418 FDPQGTFIRHW 428
           +DP   FI  W
Sbjct: 407 YDPNHEFIERW 417


>gi|332141437|ref|YP_004427175.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327551459|gb|AEA98177.1| deoxyribodipyrimidine photolyase, putative [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 478

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 91/459 (19%), Positives = 173/459 (37%), Gaps = 41/459 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           +   T   + ++WL+ DLR+ D++ L+ A   S+ +++ ++   P    +  +S R  HF
Sbjct: 2   LSDNTKPPITIIWLKRDLRLRDHEPLFRAVA-SNERILLLYCWEPSLIEEPHMSVRHWHF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL----------FYNR 110
           I  S+  +   L +   V   H      ++++ L        +  +           YNR
Sbjct: 61  IQQSIDDINGQLPEHVNVLTLH-----MEAVDALAFISRFYTINAVRSYQEIGLKVTYNR 115

Query: 111 QYEINEVRRDK----------LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160
              +     ++           + + L HR   K+  +          +     +  +  
Sbjct: 116 DLRVANHLNNRRIPFLEAKCGAVIRGLPHRAQWKANWEEYFAESTYDYDLKRANWVKWNV 175

Query: 161 FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
                  +L  +++ +L      +             +        M P GE+ A  +L+
Sbjct: 176 HVDIQKASLTLSEVSALYAAKKYINKDYLSKYCGVLSEDGLIDFSAMQPGGERRAWQVLK 235

Query: 221 KFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI------ 272
            F  ++  YY +    P  A +  S+LSPYL+ G +S +Q +  ++ +            
Sbjct: 236 DFFNDRGQYYHQHISKPEYARRACSRLSPYLAWGNISIKQVYQSVQRQKHKKRALPIHEK 295

Query: 273 -KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQ 328
            +      +  + L W   +        S+   +P     E   +            W  
Sbjct: 296 KRWSRALSALTSRLHWHCHFIQKFESEHSIEW-RPMNSAYENFPYIDGPEAERRFYHWSI 354

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG+P++DA MR L   G+++ R+R +  SFL   L V W     Y  +Q LD +   +
Sbjct: 355 GQTGYPLVDACMRALRQTGYLNFRMRAMVTSFLCHHLNVHWIKAAHYLATQFLDFEPGIH 414

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
               Q  AS     +   R++NP  Q K+ DP+G FI+ 
Sbjct: 415 YPQIQMQASVT--GIHTVRLYNPASQSKKLDPEGEFIKK 451


>gi|126665677|ref|ZP_01736658.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
 gi|126629611|gb|EBA00228.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
          Length = 519

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 114/509 (22%), Positives = 194/509 (38%), Gaps = 51/509 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + + WL+ +LR+ D++  + +        KV+ ++   PE  +Q  +S +   FI  +L 
Sbjct: 1   MQIFWLKRNLRLQDSEPFFESMRAFRKKGKVLPLYCHEPELIQQPDVSRQHQLFIQETLE 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKLLEK 125
           ++ +     G            ++++ LD     Q +TK++ +++   N   +RDK +  
Sbjct: 61  ELDRDFQSIGGKLL----QAVGETVDVLDRIHRVQPLTKIWTHQETTQNSQFQRDKAVAA 116

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
                 +       + L    I   + +       F  ++   L       L   A R  
Sbjct: 117 WCADHGVEL-----LELAQNGIARGSQKPELFPPYFACSVSSKLRDPIGTDL---AERFA 168

Query: 186 GPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKV-YYYVEQRDIP--AIQG 241
               PS  P+          P+    G   A+  L +F        Y  Q   P  A QG
Sbjct: 169 PLPFPSCDPKAIPKAAGTDKPLRQKGGRSQAIKNLNRFFTVPYLKQYPFQISSPNTAWQG 228

Query: 242 TSQLSPYLSIGVLSPRQCWNRL--------KEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
            S++S YL+ G++S R+ +  +             D   K +  A  +L+ L WR  Y  
Sbjct: 229 CSRISTYLAYGIVSDRELFQAVDRVVTDAHSRMNADQFGKFQENARFYLDRLSWRRQYMQ 288

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDS----------------HLLQAWKQGYTGFPIID 337
                P +        +    E +                       AWKQG TGFP ID
Sbjct: 289 TFEASPELEFQCMLAQFNGVREADYSEGHSLTHSSTPSSGQSEQHFTAWKQGLTGFPYID 348

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           AAMR LN  GW++ RLR    SF   +L +      EY  ++ LD +   ++   Q    
Sbjct: 349 AAMRFLNQTGWINMRLRATLVSFATMNLWIPTTKVAEYLATEFLDYEPGIHHVIHQII-- 406

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLS 453
            G        +++P  QG+  D  G FIR W+PEL +VP   +H           + ++ 
Sbjct: 407 AGTTEFNELMVYDPVKQGRDHDLDGHFIRKWVPELADVPGSELHDLAKTAFRLSKQAEIR 466

Query: 454 --LNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             + YP  IVDH+       ++    ++ 
Sbjct: 467 GYMPYPEAIVDHRATAKKAKDRVSDLRRS 495


>gi|325141516|gb|EGC63986.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           961-5945]
          Length = 433

 Score =  243 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 116/465 (24%), Positives = 182/465 (39%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI F          S   L    ++     +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPFY------TAASPAGLVRLAVRLNTRAVIADESHTFADKLTD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      Y  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236
            +        P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GSDLFAAYRQPFPENLSAPQPAVLSDGIFLPRNGGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR    +  E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKNTSLMGAYLSAGCISPRLLARKSLERRLNA----------WTDNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W+ AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              + DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|254805669|ref|YP_003083890.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha14]
 gi|254669211|emb|CBA08013.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha14]
          Length = 433

 Score =  243 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 115/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E         R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            Y             +    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QY------------ADDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W+ AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              R DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|325131645|gb|EGC54351.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M6190]
 gi|325139007|gb|EGC61554.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           ES14902]
          Length = 433

 Score =  242 bits (618), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 180/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W+ AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              + DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|260772745|ref|ZP_05881661.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           metschnikovii CIP 69.14]
 gi|260611884|gb|EEX37087.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
           metschnikovii CIP 69.14]
          Length = 451

 Score =  242 bits (618), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 107/440 (24%), Positives = 179/440 (40%), Gaps = 24/440 (5%)

Query: 7   MSV-HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHF 60
           MS+  L W  NDLRI+DN  L  A  NS        I +     Q           +  F
Sbjct: 1   MSIRSLYWFTNDLRISDNPLLTQAAQNSHQLTCCYLIPSLTPLDQRFQVVASNGLAKQRF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  +   L   G   Q        +++  L  +        L+ +   +    +  
Sbjct: 61  LLESLADLDAKLQTLGQSLQIATG----EAVSQLCQFIELTEANHLYVSESVDFAIHQTL 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           + +  R    +   S +   L     +      +   ++ FRK +     +   +S    
Sbjct: 117 REVRLRYPQ-LTVVSLNTHRLFEQAELPFSLAALPDSFSVFRKQVESLEGRYSSQSARWN 175

Query: 181 AIRLTGPVTPSNIPRFFDYPF-------QAIDPMFPIGEQNALHILR-KFCKEKVYYYVE 232
           +     P +       +               P++  GE  AL  L   F  +    Y +
Sbjct: 176 SDITALPPSVLPSSSSWLSTAIRSINLELRSSPLWRGGESAALEHLEDYFSSDASLIYKQ 235

Query: 233 QRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+ +   + +++ SP+L+ G LS  +   RL +   +         +    EL+WRE++
Sbjct: 236 TRNALDEWESSTKFSPWLANGCLSIGRLLARLNDY--ETQRGANESTYWIYFELLWREYF 293

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           +     Y +       I     +  +     +++W  G T +PI++AAM+QL   G++ N
Sbjct: 294 QWYALKYGAQLFQFSGIKGQVPLT-SYYPQRMRSWINGTTPYPIVNAAMKQLKATGYLSN 352

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R R + AS LV +L +DWR G +YF SQL+D D+ASN G WQ+ A  G D   + R F+ 
Sbjct: 353 RSRQLVASCLVHELSIDWRYGAQYFQSQLIDYDVASNWGNWQYLAGVGADPRGHRR-FDL 411

Query: 412 TIQGKRFDPQGTFIRHWLPE 431
             Q   +DP+ +FIRHW  E
Sbjct: 412 AKQTALYDPELSFIRHWQGE 431


>gi|261400529|ref|ZP_05986654.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ATCC 23970]
 gi|269209791|gb|EEZ76246.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ATCC 23970]
          Length = 429

 Score =  242 bits (618), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 114/470 (24%), Positives = 184/470 (39%), Gaps = 59/470 (12%)

Query: 1   MKATTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA 55
           M + TA +V      LVW R +LRI DN AL AA     + +I ++I   E       + 
Sbjct: 1   MPSETAATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIWIDDAET-----GNP 54

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
           R++ F   S  ++ + L+ +GI            S   L    ++  +  +  +  +   
Sbjct: 55  RRTAFYRQSAAELAQVLAGRGIPLY------TAASPAGLVRLAVRLNIRTVIADASHTFA 108

Query: 116 EVRRDKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +   D  L   L    I  +F +D  +     ++      +  +  +R+  +    +   
Sbjct: 109 DKLADNALWHELDKHGIALTFVNDRSVFDNTDLIPDNGTAHTDFNRYREVWLDRFSKHP- 167

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYV 231
              P  +        P         P    D +F     GE  A    R+F ++    Y 
Sbjct: 168 ---PADSDLFAAYRQPFPENLPAPQPAAFSDGIFLPQNGGETAAWRQWRRFLEQA-DSYS 223

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
             +D P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+
Sbjct: 224 VLKDFPSRKNTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFF 273

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGW 348
             L   +             +    + +      L  W+QG TG PIIDAAMR L+  G 
Sbjct: 274 LQLALQH------------ADDAPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGS 321

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           +H  L+ ++A F    L +  R GE +F  QL D D A N G W+ AAS           
Sbjct: 322 LHPALKRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------C 374

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
            +      R DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 375 PDIAAASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 423


>gi|28900058|ref|NP_799713.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308094879|ref|ZP_05892988.2| cryptochrome dash [Vibrio parahaemolyticus AN-5034]
 gi|308095330|ref|ZP_05905084.2| cryptochrome dash [Vibrio parahaemolyticus Peru-466]
 gi|308125427|ref|ZP_05775230.2| cryptochrome dash [Vibrio parahaemolyticus K5030]
 gi|81839701|sp|Q87JP5|CRYD_VIBPA RecName: Full=Cryptochrome DASH
 gi|28808341|dbj|BAC61546.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086793|gb|EFO36488.1| cryptochrome dash [Vibrio parahaemolyticus Peru-466]
 gi|308091994|gb|EFO41689.1| cryptochrome dash [Vibrio parahaemolyticus AN-5034]
 gi|308115600|gb|EFO53140.1| cryptochrome dash [Vibrio parahaemolyticus K5030]
          Length = 445

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 114/431 (26%), Positives = 179/431 (41%), Gaps = 23/431 (5%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATP---EQWRQHGISARQSH 59
              + L W   DLR+ DN  L  A    D +++ ++     TP      ++  +   +  
Sbjct: 2   KKKIGLYWFTFDLRLHDNSLLVDASSFLD-ELVCLYCRPSVTPFLHHFAQEVTLGRARQK 60

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           FI ASL ++  +L Q G          +    + L        VT L+ +     +E   
Sbjct: 61  FIDASLCELNDALGQLGQRLWTLDLPPY----QALKYAIQYLSVTHLYSDAMAGSDEQSI 116

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              L+    H VI +      L     +      + + +T FRK +    +   + +   
Sbjct: 117 LHKLQDEYPHLVIVQ-HSVRSLFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDAPSR 175

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRD-IP 237
                 G   P+    +FD        +F  GE + L H  R F       Y E R+ + 
Sbjct: 176 LPPMPKGAQLPTLSSFYFDE-----SALFSGGEWSGLAHCRRYFFSGLASSYKETRNGLD 230

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +  +++ SP+L++G +SPR     LK+   +         +    EL+WRE++      
Sbjct: 231 GMAYSTKFSPWLALGCVSPRMIHAMLKQY--EQTQGANDSTYWIYFELLWREYFYWYARC 288

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           Y         I     +  +  +H  Q WK G T +PI++A M QLN  G+M NR R + 
Sbjct: 289 YQQRLFRFGGIRNQPPLT-SFYAHRFQQWKNGTTPYPIVNACMHQLNHTGYMSNRGRQLV 347

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D     R FN   Q + 
Sbjct: 348 ASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQTQM 406

Query: 418 FDPQGTFIRHW 428
           +DP   FI  W
Sbjct: 407 YDPNHEFIERW 417


>gi|218768929|ref|YP_002343441.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis Z2491]
 gi|121052937|emb|CAM09291.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis Z2491]
 gi|319411227|emb|CBY91634.1| deoxyribodopyrimidine photo-lyase (DNA photolyase;
           photoreactivating enzyme) [Neisseria meningitidis WUE
           2594]
          Length = 433

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 180/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W+ AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              + DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|313669234|ref|YP_004049518.1| deoxyribodopyrimidine photolyase [Neisseria lactamica ST-640]
 gi|313006696|emb|CBN88164.1| deoxyribodopyrimidine photolyase [Neisseria lactamica 020-06]
          Length = 433

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 180/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I   E       + R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAET-----GNPRRTAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQVLAGRGIPLY------TAASPAGLVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      Y  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236
            +        P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GSDLFAAYRQPFPENLSTPPPAAFSDGIFLPQNGGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKNTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +             +    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------ADDGPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
             ++A F    L +  R GE +F  QL D D A N G W+ AAS            +   
Sbjct: 330 IRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHTYP-------DIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              + DP GTF+R  +PEL ++P   IH P       D +  YP 
Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLPAAVIHTPWRAAGSID-THGYPA 426


>gi|309378182|emb|CBX23190.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 433

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 111/465 (23%), Positives = 182/465 (39%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA     + +I + I   E       + R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIRIDDAET-----GNPRRTAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQVLAGRGIPLY------TAASPAGLVRLAVRLNIRTVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGITLTFVNDRSVFDNTDLIPDNGTAHTDFNRYREVWLDRFSKHP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF---PIGEQNALHILRKFCKEKVYYYVEQRDI 236
            +   +    P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 DSDIFSTYRQPFPENLPAPPPAAFSDGIFLPQNGGETAAWRQWRRFIEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKNTSLMGAYLSAGCISPRLLARESLERRLNA----------WTDNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +             +    + +      L  W+QG TG PIIDA+MR L+  G +H  L
Sbjct: 282 QH------------ADDAPADGNPEHTLRLTLWQQGRTGIPIIDASMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           + ++A F    L +  R GE +F  QL D D A N G W+ A+S            +   
Sbjct: 330 KRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLASSQHTYP-------DIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              + DP GTF+R  +PEL ++P   IH P       D +  YP 
Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLPAAVIHTPWRAAGSID-THGYPA 426


>gi|325145228|gb|EGC67508.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M01-240013]
          Length = 433

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 113/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +             +    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------ADDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W+ AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              + DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|304389124|ref|ZP_07371166.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis ATCC
           13091]
 gi|304336923|gb|EFM03115.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis ATCC
           13091]
          Length = 433

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 180/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-FPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W+ AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              + DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|86147737|ref|ZP_01066045.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
 gi|85834518|gb|EAQ52668.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
          Length = 466

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 117/453 (25%), Positives = 189/453 (41%), Gaps = 35/453 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHGISARQSHF 60
             + L    NDLRI DN+ L+ A  +   K+I V +       + +  ++    A +  F
Sbjct: 2   KKIGLYLFTNDLRINDNQLLHYAVQSV-GKLICVIVEPTLVRFSADLAQEQSYGAHRQTF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNF--DDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
           +  S+  ++ +L + G        ++   D + + L      Q VT  F N     +E +
Sbjct: 61  VSQSITNLESNLVKFGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFANAHCGYDERQ 120

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD----- 173
               L+ R  + + C     S L     +     ++   +T FRK +    V  +     
Sbjct: 121 LIHSLQSRHPNLITCLPHH-STLFDQHELSFELSKVPSSFTKFRKLVEHLDVNRNETVIS 179

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYV 231
            L      A+  T   T +           A+   +  GE   L  L   F  +  + Y 
Sbjct: 180 ALPPAVRLALTSTSTSTSTISLFSSPNDESAVISDYWGGEDAGLAHLENYFSHDYAFNYK 239

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           + R+    I+ +++ SP+L++G +SP+  +  LK+   D         +    EL+WRE+
Sbjct: 240 QTRNAFDGIENSTKFSPWLALGCVSPKTIYCHLKQFEAD--HGSNDSTYWIYFELLWREY 297

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +        S   G+      +    +   +L L  WK G T +PI+DA MRQLNT G+M
Sbjct: 298 FYWKCLSLGSSLFGETSNHKLDSSNSSATLNLNLAKWKSGNTNYPIVDACMRQLNTTGYM 357

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS------------ 397
            NR R + AS L+ +L +DWR G  YF SQL+D D+ASN G W + A             
Sbjct: 358 SNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALRPQVSTQTNK 417

Query: 398 --TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
               N + P  R F+   Q   +DP   FI  W
Sbjct: 418 QKNANQAQPKSRHFDLGKQTDMYDPDHAFINKW 450


>gi|325202884|gb|ADY98338.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M01-240149]
          Length = 433

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 115/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E         R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPNLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDSPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W  AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              R DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|261378496|ref|ZP_05983069.1| deoxyribodopyrimidine photolyase [Neisseria cinerea ATCC 14685]
 gi|269145039|gb|EEZ71457.1| deoxyribodopyrimidine photolyase [Neisseria cinerea ATCC 14685]
          Length = 430

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 121/467 (25%), Positives = 179/467 (38%), Gaps = 53/467 (11%)

Query: 1   MKATTAMSVH-----LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA 55
           M +  A +V      LVW R +LRI DN AL AA     + +I ++I   E    H    
Sbjct: 1   MPSEHAATVAHAMYTLVWFRQNLRIRDNAALCAAVAEG-SPIIGIWIEDTETGNLH---- 55

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            ++ F   S  ++ + L+  GI       S+       L    +   V  +  +      
Sbjct: 56  -RTAFYRQSAAELAQVLAGHGIPLYTAASSS------GLIRLAVGSSVRTVIADASCTFA 108

Query: 116 EVRRDKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           E   D  L   L    I  +F +D  +     +       +  +  +RKA +    +   
Sbjct: 109 EKLTDNALWHELDKHSIRLTFVNDRSVFDQTDLPPDNGTAHTDFNRYRKAWLDRFSKHP- 167

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYV 231
              P  +        P         P    D +FP    G   A    + F K+   +Y 
Sbjct: 168 ---PADSDIFATYRQPFPENLSAPQPAALSDGIFPIRHGGSSAAWKQWQTFLKQA-DFYD 223

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
             +D P+ + TS +S YL+ G LSPR          +D          SW + LI R+F+
Sbjct: 224 VLKDFPSRKHTSLMSAYLNAGCLSPRLLAREGIGYRLD----------SWTDNLIRRDFF 273

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             L   +                   +++  L  W+QG TG PIIDA+MR L   G +H 
Sbjct: 274 LQLALQHADDASSDVN---------PENTRYLALWQQGQTGIPIIDASMRCLYKTGGLHP 324

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
            LR + A FL   L V    GE +F  QL D D A N G W+ A+S            + 
Sbjct: 325 VLRRLCADFLCHTLRVPRHEGEAWFARQLTDFDAAINQGNWRLASSQHTYP-------DI 377

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
                + DP GTF+R  +PEL ++P   IH P       D +  YP 
Sbjct: 378 AAAAHKTDPDGTFVRRHIPELAHLPAAVIHTPWRAAGSID-THGYPA 423


>gi|316985228|gb|EFV64180.1| FAD binding domain of DNA photolyase family protein [Neisseria
           meningitidis H44/76]
 gi|325141125|gb|EGC63628.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           CU385]
 gi|325199492|gb|ADY94947.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           H44/76]
          Length = 433

 Score =  240 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 180/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRTVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      Y  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPQPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W+ AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              + DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|302422386|ref|XP_003009023.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102]
 gi|261352169|gb|EEY14597.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102]
          Length = 703

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 114/512 (22%), Positives = 202/512 (39%), Gaps = 80/512 (15%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGI---- 53
           M ++T  ++ +  LR+DLR++DN  L+    + D     ++ V++    Q    G     
Sbjct: 1   MPSST--NILIYLLRHDLRVSDNPILHHLATSKDHGFTHLLPVYVFPAHQIETSGFIRDG 58

Query: 54  ------------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95
                                ++ FI  S+  +Q+S    G           D     L 
Sbjct: 59  SKSPYPEARSQVGSFWRCGPHRAKFIAQSVWNLQESFQGLGSGLCLRAGRFDDVLNGLLK 118

Query: 96  SYC-LQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLL--PPGSILNHA 151
                QQ +  ++   +  + E R +K +     ++ +  K + D         + L +A
Sbjct: 119 GLTEKQQTIGAVWMTLEDAVEEKRDEKAVSSICSENNIEFKLWQDEKYFVDDRDTELENA 178

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ--------- 202
             +  ++T +RK   + L +    +LP P+     P    ++    + PF+         
Sbjct: 179 HDLPDIFTTYRKT-QEPLRERPRPTLPKPSNNSLPPYPSDDVVPVQERPFEMPVTYEELE 237

Query: 203 -----------AIDPMFP----------IGEQNALHILRKFCKEK-VYYYVEQRD-IPAI 239
                         P +P           GE +AL  +    K   +  Y   R+ +  +
Sbjct: 238 AALLKPVEDVLDDAPEYPSNATSVHPLKGGELDALQRVNHLIKSCSMSNYKNTRNGLLGV 297

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRL----------KEEFVDLLIKPKSGAFSWLNELIWRE 289
             +++LS YL++G L+ RQ    +           +E          G  +   EL+WR+
Sbjct: 298 DFSTKLSGYLALGCLTARQVHEEMVKYEDGQGPQYKEIDGFGNGENEGTKAVRFELLWRD 357

Query: 290 FYRHLMAFYPS-VCMGKPFIPWTEKIEWNKD-----SHLLQAWKQGYTGFPIIDAAMRQL 343
           + R     +   +   + F    +  +W        + +L+ +  G TG   IDA+ R+L
Sbjct: 358 YMRLCTRKFGHRLFRAEGFRDDRKPTQWKTAKQPEIAEILKRFLAGTTGMGFIDASQREL 417

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              G+  NR R   ASFL K L +DWR G E++   L+D D++SN   WQ+ A  GND  
Sbjct: 418 LHTGYTSNRARQNVASFLAKHLGIDWRYGAEWYECMLIDYDVSSNWSNWQYVAGVGNDPR 477

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
              RIFNP  Q   +D QG +++ W+PE   +
Sbjct: 478 GEARIFNPVKQAFDYDKQGEYVKAWVPETRQL 509


>gi|254671546|emb|CBA09171.1| Deoxyribodipyrimidine photolyase [Neisseria meningitidis alpha153]
          Length = 433

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 115/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E         R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W  AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              R DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|325131015|gb|EGC53742.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           OX99.30304]
          Length = 433

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E         R++ F
Sbjct: 9   LYADTRAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFVAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W  AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              + DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|121635578|ref|YP_975823.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis FAM18]
 gi|161870775|ref|YP_001599948.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis 053442]
 gi|120867284|emb|CAM11055.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis FAM18]
 gi|161596328|gb|ABX73988.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis 053442]
 gi|325128961|gb|EGC51813.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           N1568]
 gi|325199013|gb|ADY94469.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           G2136]
          Length = 433

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 115/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       VI ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W  AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              R DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|328725336|ref|XP_003248433.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon
           pisum]
          Length = 187

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 118/187 (63%), Positives = 144/187 (77%)

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           M  +P++C  +PF+ WT  ++W ++   L+AW+QG TG+PI+DAAMRQLNT+GWMHNRLR
Sbjct: 1   MVAFPALCKHQPFVDWTRNVDWQQNEAHLKAWQQGKTGYPIVDAAMRQLNTLGWMHNRLR 60

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           MITASFLVKDLL+DWR GE YFM QL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q
Sbjct: 61  MITASFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 120

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQY 474
           G+RFD QG FIR WLPEL  VP   IH P  W  KN+  L+YP PIV+HK A   TL+ +
Sbjct: 121 GERFDKQGAFIREWLPELKEVPDSDIHQPQVWAQKNNKKLDYPAPIVEHKDARKKTLDAF 180

Query: 475 YAAKKQS 481
             A+  +
Sbjct: 181 ERARSAA 187


>gi|310791128|gb|EFQ26657.1| DASH family cryptochrome [Glomerella graminicola M1.001]
          Length = 705

 Score =  239 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 126/545 (23%), Positives = 203/545 (37%), Gaps = 95/545 (17%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYA---ACHNSDAKVIAVFIATPEQWRQHGI-------- 53
           TA ++ +   R+DLRI DN  ++    A  +    V+ +++    Q    G         
Sbjct: 2   TATNILIYLFRHDLRIADNPIIHHLSTASDHGFTHVLPIYVFPAHQIEISGFLREGSKSP 61

Query: 54  --------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY-C 98
                            ++ F+  S+  +++SL               D   + L S+  
Sbjct: 62  YPEARSQIGKFWRCGPHRTKFVAQSVWNLKESLESVHSGLALRAGKFGDVVDDLLRSFAD 121

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHAL--QMY 155
            +Q+V  ++   +  + E R +K +     +H V  K++ D         L+     ++ 
Sbjct: 122 KKQKVGAVWMTAEESVEEKRDEKAVSAACEKHGVAFKTWTDEKYFIDDRDLHFESPSELA 181

Query: 156 KVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ------------- 202
            V+T FRK   + L +    +LP P      P    +I      PFQ             
Sbjct: 182 DVFTAFRKT-QEPLREKPRPTLPHPKKGSLPPYPDQSIIPPQRTPFQIPSTYDALEAALL 240

Query: 203 -------AIDPMFP----------IGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTS 243
                    +P FP           GE  A+  L    K   V  Y + R+ +  +  ++
Sbjct: 241 KPLKSPFNEEPKFPENAKSVHPFKGGEDFAIERLEHLVKTGSVSSYKDTRNEMLGVDFST 300

Query: 244 QLSPYLSIGVLSPRQCWNRLKE----------EFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +LS YL++G L+ RQ    L +          E          G  +   EL+WR++ R 
Sbjct: 301 KLSAYLALGCLTSRQIHEALVKYEDGQDDRFKETPGYGKGENDGTKAVRFELLWRDYMRL 360

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNK-DSHL-----------------LQAWKQGYTGFPI 335
               + +              +W   D                    LQ +  G TG  +
Sbjct: 361 CTMKFGAKLFCVTGFKNDTTPKWKSADPEHVVSEDNLGTPVDDVQKILQRFLNGTTGMGL 420

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           IDA+ R+L   G+  NR R   ASFL K L +DWR G E++   L+D D+ SN   WQ+ 
Sbjct: 421 IDASQRELYHTGYTSNRARQNVASFLTKHLGIDWRYGAEWYEYLLVDYDVNSNWSNWQYV 480

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-----QYIHAPHSWLDKN 450
           A  GND     RIFNP  Q   +D  G +++ W+ E   V       Q    P   L++ 
Sbjct: 481 AGVGNDPRGDNRIFNPVKQAFDYDKTGEYVKAWVVETREVENLENVFQLWTTPQEELERL 540

Query: 451 DLSLN 455
            LS N
Sbjct: 541 GLSKN 545


>gi|167563424|ref|ZP_02356340.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis EO147]
          Length = 254

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 103/256 (40%), Positives = 139/256 (54%), Gaps = 9/256 (3%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   RD P    TS+LSP++  G LS RQ W+   +         ++   ++  EL WRE
Sbjct: 1   YATGRDRPGAASTSRLSPFVRFGNLSVRQVWHAAVDAHAH-GAATQADLDTFCRELGWRE 59

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F    +  +P +   +      + + W  D   L AW++G TG+P++DA MR+L   GWM
Sbjct: 60  FCYGQLYRFPDLAR-RNLRHNLDGMPWRDDPAALAAWRRGATGYPLVDAGMRELWATGWM 118

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR RM+ ASFLVK LL+DWR G+ +F   L+D D ASN   WQW A  G D+ PYFRIF
Sbjct: 119 HNRARMVCASFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIF 178

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVP-TQYIHAPHSWLDKN------DLSLNYPLPIVD 462
           NP  QGK+FDP G ++R W+PEL  +P    IH P +            L   YPLPIV 
Sbjct: 179 NPIAQGKKFDPDGAYVRRWVPELAGLPANAAIHEPWAAPAARLAAAGVRLGDTYPLPIVA 238

Query: 463 HKKACHHTLNQYYAAK 478
           H  A    L+ +   +
Sbjct: 239 HDAARKRALDAWVTVR 254


>gi|331006214|ref|ZP_08329536.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
 gi|330419971|gb|EGG94315.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
          Length = 477

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 102/460 (22%), Positives = 179/460 (38%), Gaps = 43/460 (9%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAA--CHNSDAKVIAVFIATPEQWRQHGIS-----A 55
           A T     L+W  +DLRI DN  L+ A   +N+  +++ ++    E + Q          
Sbjct: 4   APTPEPTTLLWFTHDLRIHDNALLFYANKINNNKHRLLCLYCIDEEWFEQDRFGLQRIAT 63

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            + +F+  SL  +   L   G      +     +  E +     +  +  +  +     N
Sbjct: 64  HRWNFLVGSLHALNTELQALGQQLVIAKG----NPTEIISDLLSRYSINTVISSNTVGYN 119

Query: 116 EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADL 174
           E    + +  +  H    +  +   L     +      +   ++ FR+ +         L
Sbjct: 120 EQAYWQEISNKYPHLAFIQQ-ETFTLFAESQLPFLLNNLPDNFSKFRRLIESTKNHPHYL 178

Query: 175 RSLPVPAIRLTGPVTPSNIPRF-----FDYPFQAIDP---------------MFPIGEQN 214
            ++    I     + P           F +P  +  P                F  GE +
Sbjct: 179 DAIKSSLIGQPTKLPPKLHITLQEEHQFSWPRTSTIPNGKNNHDINANKNSLGFYGGEAS 238

Query: 215 ALHIL-RKFCKEKVYYYVEQRDIPAIQG-----TSQLSPYLSIGVLSPRQCWNRLKEEFV 268
            +  L + F      +Y + R+    +      +S+ SP+L+ G LS R     L     
Sbjct: 239 GISHLKQYFSTNAPSHYKDTRNALGCEKEEWQLSSKFSPWLANGSLSARYIVQMLSRYEE 298

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           +         +  + EL+WRE+++     Y      +  I     +  +      Q W  
Sbjct: 299 E--NGANDSTYWIMFELLWREYFQWYARKYGKKLFHRAGIQQRAPLA-SFYPQRFQQWCN 355

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G T +P+++A M+QLN  G++ NR R I AS L+ +L +DWR G  YF  QL+D D+A+N
Sbjct: 356 GSTPWPLVNACMKQLNQTGFLSNRGRQIVASVLIHELGLDWRCGAAYFEQQLIDYDVAAN 415

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
            G WQ+ A  G D     R FN   Q + +DP  T+I+ W
Sbjct: 416 WGNWQYIAGVGADPRG-GRQFNIDKQQQLYDPDETYIKRW 454


>gi|289551448|ref|YP_003472352.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180979|gb|ADC88224.1| Deoxyribodipyrimidine photolyase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 424

 Score =  239 bits (610), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 125/427 (29%), Positives = 199/427 (46%), Gaps = 25/427 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M++ LV L    R+  N   +   +++ A +   +   P +  +   +  +  F + ++ 
Sbjct: 1   MNIALV-LNRVFRLEQNPM-FEYLNHNQADIERCYCVIPLELFE-DEAPLKRTFYHQAVT 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LE 124
           Q  + L + GI         F        S+C Q+ +  + +             +  ++
Sbjct: 58  QFIQQLIEIGI-------KPFVFPYTAFASFCEQKEIDTVVFPSDIMSFHNCECDILHVK 110

Query: 125 KRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             +Q + I   +   +    P   LN   Q YKV+T F KA    L Q       +  ++
Sbjct: 111 SEIQAQKIAIVNVRANHYFQPSRTLNQQGQPYKVFTSFYKANRPQLRQRRRYPYQLDKLK 170

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                    I    +   + +     IGE  +    + F    + +Y   R+      TS
Sbjct: 171 -------QQIINADNTSVKKVTEHINIGEAKSQQQWQAFLNNNIEHYQYYREYLPETLTS 223

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           QLS  L+ G L   +   +L E + D     +    +++ EL++REFY  LM +YP    
Sbjct: 224 QLSIALAYGFLDINEIMRQLLERYHD----NEENYEAFIRELLFREFYYVLMVYYPETA- 278

Query: 304 GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              F    + I W+++     AWK+G TG+PIIDAAM +L   G+MHNR+RM+TA FL K
Sbjct: 279 HTSFNDKYKHITWSENQSDFNAWKEGRTGYPIIDAAMHELKQTGFMHNRMRMVTAQFLTK 338

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           +L +DW  GE YF + L+D D ASN  GWQW+ASTG D+VPYFR+FNP  Q +RFD +  
Sbjct: 339 ELFIDWTWGENYFKNLLIDYDAASNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDKKVY 398

Query: 424 FIRHWLP 430
            ++H  P
Sbjct: 399 TLKHTCP 405


>gi|302417194|ref|XP_003006428.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
 gi|261354030|gb|EEY16458.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
          Length = 626

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 109/538 (20%), Positives = 176/538 (32%), Gaps = 82/538 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W R DLR+ D+ AL AA     A +  VF   P    +      +  ++      +  
Sbjct: 7   IYWFRTDLRLHDSPALTAALELEPAVLWPVFTWDPHYVYRARGGLNRWQYLLDCQNDLSA 66

Query: 71  SLSQKG--IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           S+++          +    +             +VT L + +  +     RD ++    +
Sbjct: 67  SITKLNPKSKLFVLR----EGPQTLFPKLFKAWKVTHLVFEKDTDSYGRERDGVVVAAAR 122

Query: 129 HRVICKSF-DDSVLLPPGSILNHALQ-------------------------MYKVYTPFR 162
              +         L     I+                                K+  P  
Sbjct: 123 EAGVEVIMRSGRTLWDSDDIVRANGGKPTMSMSQLQKAGSRVGDIPRPVAAPTKLPDPGE 182

Query: 163 KALIQNLVQADLRSLPVPAIR-----------LTGPVTPSNIPRFFDYPFQAIDPMFPIG 211
             +     + D       A R           + GP     I    +  F +       G
Sbjct: 183 MPVDFEQERPDTTPDFNAAQRTVEAGDQGYASIAGPNGDFGIETMEELGFPSATTPHRGG 242

Query: 212 EQNALHILRKFCKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           E  AL  L++  K+  Y   + + +  PA    Q T+ LSP++  G LS R+ + +  + 
Sbjct: 243 ESRALETLKEVMKDVKYAATFRKPQTSPAAFEPQSTTLLSPHMHFGSLSVREFYWQAVDA 302

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW---------- 316
                        S   +L++R+ Y    A             +   I W          
Sbjct: 303 VKAFGKGASGPPESLTGQLLFRDMYFAAQAALGYKFEQTRGNAYCRFIPWHLPSKVNTET 362

Query: 317 -----------NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-D 364
                       +     + WK G TGFP IDA MRQL   GW+H+  R   A FL +  
Sbjct: 363 GLITGQYHVDSEEADLWFRRWKAGQTGFPWIDALMRQLAEEGWIHHLGRHSVACFLTRGG 422

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
             +DW  G E F   L+D + A N G WQW  S       YFR ++P   G+++D +G  
Sbjct: 423 CYIDWERGCEVFEEWLIDHEPACNAGNWQW-LSCAAFFSQYFRCYSPVSFGQKWDKEGLL 481

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
           I            +   A  + LD  +    YP P+ D  +     L     A   +L
Sbjct: 482 ILR----------KRGQAWCNGLDDREEGT-YPKPMFDFNERRTACLAAMKKAYGVAL 528


>gi|261391823|emb|CAX49280.1| deoxyribodopyrimidine photo-lyase (DNA photolyase;
           photoreactivating enzyme) [Neisseria meningitidis 8013]
          Length = 433

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 113/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL  A       +I ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPIIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAGLVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      Y  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W+ AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWRLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              + DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|325205374|gb|ADZ00827.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M04-240196]
          Length = 433

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 113/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W  AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              + DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|325203409|gb|ADY98862.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M01-240355]
          Length = 433

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELNKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W  AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              R DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|325137115|gb|EGC59711.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M0579]
          Length = 433

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 111/462 (24%), Positives = 178/462 (38%), Gaps = 48/462 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL  A       VI ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      Y  +  +R+  +    +       +
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQPPAGPDL 176

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
            A          + P+          P    GE  A    R+F ++    Y   +D P+ 
Sbjct: 177 FAAYRQPFPENLSAPQPAALSDGIFLPQ-NGGETAAWRQWRRFLEQA-DSYSVLKDFPSR 234

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           + TS +  YLS G +S R       E  ++           W + +I R+F+  L   + 
Sbjct: 235 KNTSLMGAYLSAGCISSRLLARESLERRLNA----------WADNIIRRDFFLQLALQH- 283

Query: 300 SVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                       +    + +      L  W+QG TG PIIDAAMR L+  G +H  LR +
Sbjct: 284 -----------ADDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGGLHPALRRL 332

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           +A F    L +  R GE +F  QL D D+A N G W+ AAS            +      
Sbjct: 333 SADFFCHVLNLPRREGEIWFARQLTDFDVAINQGNWRLAASRHTYP-------DIAAASY 385

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
           R DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 386 RTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|5689255|dbj|BAA82885.1| blue-light photoreceptor [Oryza sativa Japonica Group]
          Length = 681

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/325 (31%), Positives = 156/325 (48%), Gaps = 18/325 (5%)

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYY 229
           L    +    L     PS+   F D   +  + +    +  G QNA   L  F    +  
Sbjct: 184 LPPKRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMD 243

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNEL 285
           Y   R       TS LSPYL  G LS R+ +++++ +      +           +L  +
Sbjct: 244 YSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSI 303

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
             RE+ R+L   +P   + KP +       W  D    + W+QG TG+P++DA MR    
Sbjct: 304 GLREYSRYLTFNHP-CSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRDSRA 362

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            GW+H+R+R++ +SF VK L + WR G +YF   LLDGDL S+  GWQ+ + +  D    
Sbjct: 363 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDGDLESDRLGWQYISGSLPDGREL 422

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLP 459
            RI NP ++G +FDP G ++R WLPEL  +PT++IH P    +        +L  NYPLP
Sbjct: 423 DRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLP 482

Query: 460 IVDHKKACHH---TLNQYYAAKKQS 481
           IV+   A       L++ +  +  S
Sbjct: 483 IVELDAAKTRLQDALSEMWELEAAS 507


>gi|90415708|ref|ZP_01223642.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2207]
 gi|90333031|gb|EAS48201.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
           HTCC2207]
          Length = 447

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 107/436 (24%), Positives = 180/436 (41%), Gaps = 25/436 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----PEQWRQHGISARQSHFIY 62
            V L W  +DLR+ DN AL  A    D K+I ++ A      P   +   +S R+  F++
Sbjct: 3   KVGLFWFNHDLRMDDNAALVLAAAEVD-KLICLYCADTTNTGPGWQQPAKLSPRRREFLF 61

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            SL  ++  LSQ G              +E +        V+ L+        E R    
Sbjct: 62  ESLQDLETQLSQYGQKLVVR----IQPPLEAIAQLITVHNVSHLYSANHVGSYENRIWNT 117

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------LVQADL 174
           L KR       +S     L  P  +     ++   ++ FR+ + +          + A  
Sbjct: 118 LRKRYPMLEFNQS-HTHTLFAPSQLPFTIDKLPASFSKFRRLIEKMDLDSVISAPLDAPE 176

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQ 233
           +  P  ++               +        +F  G       L+  F K+    Y + 
Sbjct: 177 KLPPPASVADIAWQPLWRDHYSSNLDGDDSPALFKGGASAGEEHLKGYFAKDLASSYKQT 236

Query: 234 RD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           R+ +  +  +++ SP+L+ G LSPR+   +L+E   +         +    EL+WRE+++
Sbjct: 237 RNGLDGMDYSTKFSPWLANGTLSPRRIVQQLQEY--EARAGANDSTYWIFFELLWREYFQ 294

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                +         I  +     +      + W  G T + II+A M+QLNT G++ NR
Sbjct: 295 WYGHRHQQQLYAFTGIAQSAPTT-SFYPERFKKWCAGNTPYAIINACMKQLNTTGYLSNR 353

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R + AS  V +L +DWR G  Y   QL+D D+ASN G WQ+ A  G D   + R F+  
Sbjct: 354 GRQLVASCFVHELGLDWRHGAAYMEQQLVDYDVASNWGNWQYLAGVGADPRGHRR-FDLK 412

Query: 413 IQGKRFDPQGTFIRHW 428
            Q + +DP+  F++ W
Sbjct: 413 KQAQIYDPKNQFVQRW 428


>gi|325135093|gb|EGC57721.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           M13399]
          Length = 433

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 179/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL AA       +I ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCAAVAEG-LPIIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRTVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      Y  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAYADFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPQPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W  AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              + DP GTF+R  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 AAHKTDPDGTFVRRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|325207317|gb|ADZ02769.1| putative deoxyribodipyrimidine photolyase [Neisseria meningitidis
           NZ-05/33]
          Length = 433

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 178/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL  A       VI ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGQTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W  AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              R DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|308388508|gb|ADO30828.1| deoxyribodopyrimidine photolyase [Neisseria meningitidis alpha710]
          Length = 433

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 114/465 (24%), Positives = 178/465 (38%), Gaps = 54/465 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A T  +  LVW R +LRI DN AL  A       VI ++I   E         R++ F
Sbjct: 9   LYADTCAAHTLVWFRQNLRIRDNAALCTAVAEG-LPVIGIWIDDAETDN-----PRRAAF 62

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S  ++ + L+ +GI            S   L    ++  +  +  +  +   +   D
Sbjct: 63  YRQSAAELAQGLAGRGIPLY------TAASPAELVRLAVRLNIRAVIADESHTFADKLAD 116

Query: 121 KLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
             L   L    I  +F +D  +     ++      +  +  +R+  +    +      P 
Sbjct: 117 NALWHELDKHGIALTFVNDRAVFGKTDLIPDGGTAHTDFDRYREVWLDRFSKQP----PA 172

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDI 236
                     P         P    D +F     GE  A    R+F ++    Y   +D 
Sbjct: 173 GPDLFAAYRQPFPENLSAPPPAALSDGIFLPQNSGETAAWRQWRRFLEQA-DSYSVLKDF 231

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P+ + TS +  YLS G +SPR       E  ++           W + +I R+F+  L  
Sbjct: 232 PSRKHTSLMGAYLSAGCISPRLLARESLERRLNA----------WADNIIRRDFFLQLAL 281

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
            +            T+    + +      L  W+QG TG PIIDAAMR L+  G +H  L
Sbjct: 282 QH------------TDDDPSDGNPEHTLRLTLWQQGRTGIPIIDAAMRCLHKTGSLHPAL 329

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R ++A F    L +  R GE +F  QL D D A N G W  AAS            +   
Sbjct: 330 RRLSADFFCHVLNLPRREGEIWFARQLTDFDAAINQGNWWLAASRHT-------CPDIAA 382

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPL 458
              R DP GTFI+  +PEL ++    +H P  +    D +  YP 
Sbjct: 383 ASYRTDPDGTFIKRHIPELAHLSADTVHTPWRFACSVD-THGYPA 426


>gi|71023669|ref|XP_762064.1| hypothetical protein UM05917.1 [Ustilago maydis 521]
 gi|46101498|gb|EAK86731.1| hypothetical protein UM05917.1 [Ustilago maydis 521]
          Length = 623

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 122/577 (21%), Positives = 201/577 (34%), Gaps = 115/577 (19%)

Query: 7   MSVHLV--WLRNDLRITDNKALYAACH---------NSDAKVIAVFIAT----------- 44
           M+ +++   LRNDLR+ D+  L+                  V+ V++             
Sbjct: 1   MTRNILIALLRNDLRLHDHPILHVCSEPTPSTANFTQPITHVLPVYVFDQRHVEVSGFPR 60

Query: 45  ------------------PEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86
                               +         +  FI  S+  ++  L + G        + 
Sbjct: 61  LEKARKDGGGKGSGEYAKTRELGLWRTGIHRIKFINESVFDLRDRLRRLGSDLAMFAGTP 120

Query: 87  FDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPP 144
                  +         V  ++ +R+    EV   K L++ L   +     F+   L+  
Sbjct: 121 ESVIASLIHQIRAHGDTVEAVYLSREINTEEVNIQKRLQRMLSDVQCRMHMFETKSLIHS 180

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------------------------VP 180
             +     ++  V+T FRK + +N +     + P                          
Sbjct: 181 RDLGFPVSKLPDVFTHFRKQVERNRIWRAPLASPDRLKPFAEVPVEDAAGVYSLSANKQH 240

Query: 181 AIRLTGPVTPSNIPRFFDYPFQA-----------------IDPMFP--IGEQNALHILRK 221
            +     V    +    D P  A                     FP   GE  AL  L  
Sbjct: 241 GLDRKNAVEKCLLQPLLDNPVLAHNELLARVMCKRGQVDVAHSAFPYRGGETEALARLDH 300

Query: 222 FCKE----KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKE-----EFVDLL 271
           +           Y + R+ +     +++    L++G+LSPR    +  E           
Sbjct: 301 YFDRSDSCPAASYKQTRNQMLGTDYSTKFGAALALGLLSPRLIAQKATELDNATHDATHN 360

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT--------EKIEW------N 317
              K G +  + EL+WR+++  +   + S       I           +  EW      +
Sbjct: 361 ASNKGGGYWIIFELLWRDYFYFVGWKFGSKLFSLRGIEDDISARSAPSKASEWKSSASLS 420

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
                   W    TG P+IDA M ++   G+M NR R   ASFL KDL  +WR G E+F 
Sbjct: 421 DRDDGFVRWCTAQTGVPLIDANMVEMVQTGFMSNRGRQNVASFLTKDLGWNWRHGAEFFE 480

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
           S L+D +  SN G WQ+ A  GND     R FNP  QG  +D  G ++  WLP L+++P 
Sbjct: 481 SWLVDYEPNSNWGNWQYVAGVGNDPR-SSRQFNPIKQGNDYDANGEYVATWLPLLSDMPP 539

Query: 438 QYIHAPH-----SWLDKNDLSLNYPLPIVDHKKACHH 469
           QY H P      +W ++   +   P PIV+ +    H
Sbjct: 540 QYRHHPWTCPDAAWAEQAHSAHYPPTPIVEQQMWRKH 576


>gi|148980022|ref|ZP_01815843.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3]
 gi|145961465|gb|EDK26769.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3]
          Length = 447

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 109/446 (24%), Positives = 190/446 (42%), Gaps = 35/446 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHGISARQSHF 60
             + L    NDLRI DN  L+ A    D +++ V I       +    ++    A +  F
Sbjct: 2   KKIGLYLFTNDLRINDNTLLHRASQLVD-ELLCVAIEPKLSTYSVRLSQEQHNGAHRHLF 60

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           I  ++  +  +L++ G      + +  +D ++ + S    Q+VT  F +     +E +  
Sbjct: 61  IKQAINDLALNLARLGQRLFVLERNKSEDLVQLVKS----QQVTHFFASSHCAHDERQLI 116

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           K    +     I +    + L    +      ++ + +T FR  + +  +  +     V 
Sbjct: 117 KDTLTQCPDLFISQQHH-TTLFESDAFPFELTKLPRSFTKFRLQVERLEINTNES---VV 172

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILR-KFCKEKVYYYVEQRD-IP 237
           A     P T +   R      +A D   +  GE   L  L   F  +    Y + R+ + 
Sbjct: 173 AYLPPAPQTATYPYREPILESEASDIGDYVGGETAGLIHLESYFSNDYAGTYKQTRNALD 232

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            I+ +++ SP+L++G +SP+  +  LK+   +         +    EL+WRE++      
Sbjct: 233 GIENSTKFSPWLALGCVSPKTIYRHLKQ--FEAHRGANDSTYWIYFELLWREYFYWKCLT 290

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL-LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             +   G+     + +   + ++      WK G T +PI+DA MRQLN  G+M NR R +
Sbjct: 291 LGTSLFGRASNDLSNEQLLDTNTGASFARWKSGNTNYPIVDACMRQLNATGYMSNRGRQL 350

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF---------- 406
            AS L+ +L +DWR G  YF SQL+D D+ASN G W + A   N   P            
Sbjct: 351 VASCLIHELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALNPQAPQNANKQSVAHQS 410

Query: 407 ----RIFNPTIQGKRFDPQGTFIRHW 428
               R F+   Q + +DP+  FI  W
Sbjct: 411 QFKSRHFDLVKQTEMYDPEHAFINKW 436


>gi|322694523|gb|EFY86350.1| Putative cryptochrome DASH [Metarhizium acridum CQMa 102]
          Length = 702

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 112/513 (21%), Positives = 186/513 (36%), Gaps = 88/513 (17%)

Query: 11  LVWLRNDLRITDNKALYA---ACHNSDAKVIAVFIATPEQWRQHGI-------------- 53
           +  LR DLR+ DN  L+    A  +    ++ V++ + +Q    G               
Sbjct: 8   VYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFSAQQVELSGFLKDGEQSPYPPAKS 67

Query: 54  --------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VT 104
                      ++ F   ++  +++SL + G        S  D     +         V+
Sbjct: 68  QVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVVDHLVKELKDAVPCVS 127

Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD----------DSVLLPPGSILNHALQM 154
            ++   +    EV+  + +      + I               D+ L  P  + +     
Sbjct: 128 SVWMTEEPSWEEVQEQESISSLCSQQGIEFELWKDEKYFVDDRDTGLESPADLPDVFTTY 187

Query: 155 YKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR---FFDYPFQAIDPM---- 207
            K   P R+   + L +    SLP      + P             D   + + P+    
Sbjct: 188 RKSQEPLREKPRKVLPRPAKSSLPAFPEEESIPAQAHPFVSPVSLEDLQKRLVKPLEHIM 247

Query: 208 ---------------FPIGEQNALHILRKFCKE-KVYYYVEQRD-IPAIQGTSQLSPYLS 250
                          F  GE +    LR   K   +  Y + R+ +  +  + +LS YLS
Sbjct: 248 DNPPKRPEDATDGHPFTGGETSGWARLRHLGKSSAMTSYKDTRNGLVGVDYSLKLSAYLS 307

Query: 251 IGVLSPRQCWNRLK-------EEFVDL---LIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           +G L+ RQ    L        E++ D          G      EL+WR++ R   A +  
Sbjct: 308 LGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRLCTAKFGR 367

Query: 301 VCMGKPFIPWTEKIE--WNKDSHL----------------LQAWKQGYTGFPIIDAAMRQ 342
                         +  W   +                  L+ ++ G TG  IIDA+ R+
Sbjct: 368 KLFRLSGFRQDRSYDKKWKTANEEKAASEQEPPPAQISKILERFQNGTTGMGIIDASQRE 427

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G+  NR R   ASF  K L +DWR G E++   L+D D++SN   WQ+ A TGND 
Sbjct: 428 LFHTGYTSNRARQNAASFFSKHLEIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGTGNDP 487

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
               R FNP  Q   +D +GT++R W+PEL  +
Sbjct: 488 RGDARTFNPVKQAFDYDKEGTYVRMWVPELQGL 520


>gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1 [Passer domesticus]
          Length = 361

 Score =  236 bits (602), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 81/365 (22%), Positives = 130/365 (35%), Gaps = 23/365 (6%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
             LR+ DN AL  A  ++   +  ++I  P       +   +  F+  SL  +  SL + 
Sbjct: 1   KGLRLHDNPALQEALRDA-TSLRCIYILDPWFAASSAVGINRWRFLLQSLEDLDNSLRKL 59

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICK 134
                  +    D           +  VT+L +    E     RD  + K  +   V   
Sbjct: 60  NSRLFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVV 115

Query: 135 SFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
             +   L     I+     +    Y  F+  + +  +     S  +     T  V     
Sbjct: 116 IENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQEN 175

Query: 194 P-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242
                      +  F        ++  GE  AL  L K  + K +    +R         
Sbjct: 176 HDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLL 235

Query: 243 ---SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              + LSPYL  G LS R  + RL E +  +  +  +   S   +L+WREF+       P
Sbjct: 236 ASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNP 294

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A 
Sbjct: 295 KFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVAC 353

Query: 360 FLVKD 364
           FL + 
Sbjct: 354 FLTRG 358


>gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus]
          Length = 361

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 129/365 (35%), Gaps = 23/365 (6%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
             LR+ DN AL      +D  V  V+I  P       +   +  F+  SL  +  SL + 
Sbjct: 1   KGLRLHDNPALRECIQGADT-VRCVYILDPWFAASSAVGINRWRFLLQSLEDLDNSLRKL 59

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICK 134
                  +    D           +  VT+L +    E     RD  + K  +   V   
Sbjct: 60  NSRLFVVRGQPTD----VFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVV 115

Query: 135 SFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
             +   L     I+     +    Y  F+  + +  +     S  +     T  V     
Sbjct: 116 IENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQEN 175

Query: 194 P-------RFFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT- 242
                      +  F        ++  GE  AL  L K  + K +    +R         
Sbjct: 176 HDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLL 235

Query: 243 ---SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              + LSPYL  G LS R  + RL E +  +  +  +   S   +L+WREF+       P
Sbjct: 236 ASPTGLSPYLRFGCLSCRLFYYRLWELYKKVK-RNSTPPLSLYGQLLWREFFYTAATNNP 294

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A 
Sbjct: 295 KFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVAC 353

Query: 360 FLVKD 364
           FL + 
Sbjct: 354 FLTRG 358


>gi|264678127|ref|YP_003278034.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
 gi|262208640|gb|ACY32738.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
          Length = 473

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 107/440 (24%), Positives = 174/440 (39%), Gaps = 30/440 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ----WRQHGISARQSHFIY 62
           MS  L+WLRNDLR+ D   L+AAC      ++ V      Q    W    I   +  ++ 
Sbjct: 43  MSTVLLWLRNDLRLHDQPVLHAACRMGAQYLLPVLCLPDIQARTRWGFARIGQHRRTWLT 102

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            ++  + ++  +                     +      V         +I        
Sbjct: 103 KTIQNLAENFHELRSQLLILNAPAAKALPALAQALGADIIV-------CEDIAAPDEQAE 155

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPVPA 181
           +E      +   +   S LL    +     Q+  V+TPFR+A+    L       +P   
Sbjct: 156 VEALRASGLQVHTVWHSSLLHQDQLPWPVRQLPDVFTPFRQAVEHAKLQPYPPLPVPEAL 215

Query: 182 IRLTGPVTPSNIPR-----------FFDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYY 229
            R+   +    +                   ++   +   GE  AL  LR++      + 
Sbjct: 216 PRVPPHIPNEYLREQIPALSALAGPSPSLDTRSAIALLQGGESAALAHLRQYLARGLPHS 275

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y   R+ +  +  +S+ S +L+ G LSPRQ +  L++   +        ++    EL+WR
Sbjct: 276 YKRTRNGLVGLDYSSKWSLWLATGALSPRQAYAELRQ--FEATRGATESSYWLWFELLWR 333

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +++R L   +         +          D     AW  G TG  ++DAAMR+L   G+
Sbjct: 334 DYFRFLHMQHGRALYRARGLGPELATP--HDDQNFAAWCSGQTGKTLVDAAMRELAATGY 391

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           + NRLR + AS+L+ DL  DWR G  +F SQLLD D+ SN G W + A  G D     R 
Sbjct: 392 LSNRLRQVAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYIAGRGTDPQGGRR- 450

Query: 409 FNPTIQGKRFDPQGTFIRHW 428
           F+P  Q   +D  G + R W
Sbjct: 451 FDPVKQAATYDADGAYQRLW 470


>gi|221068159|ref|ZP_03544264.1| cryptochrome, DASH family [Comamonas testosteroni KF-1]
 gi|220713182|gb|EED68550.1| cryptochrome, DASH family [Comamonas testosteroni KF-1]
          Length = 431

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 111/440 (25%), Positives = 180/440 (40%), Gaps = 30/440 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG----ISARQSHFIY 62
           MS  L+WLRNDLR+ D   L+AAC      ++ V      Q R H     I   +  ++ 
Sbjct: 1   MSTLLLWLRNDLRLHDQPVLHAACRMGAQYILPVLCLPDIQARTHWGFARIGPHRRAWLA 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            ++  + +S  +                     +  L   +  +        +E    + 
Sbjct: 61  NTIQNLAQSFHELRSQLLI--LDAPAAVALPALAQALGAGI--IVCEDIAAPDEQAEVQA 116

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           L       +   +   S LL P  +     Q+  ++TPFR+A+    +Q       + A+
Sbjct: 117 LRAA---GLQVHTVWHSSLLHPDQLPWPMRQLPDIFTPFRQAVEHAKLQPYPPLPVLEAL 173

Query: 183 RLTGPVTPSNIPRF------------FDYPFQAIDPMFPIGEQNALHILRKFCKEK-VYY 229
               P  PS   +                  ++   +   GE  AL  LR++      + 
Sbjct: 174 PRVPPNIPSKYRQEQVLALDAFANASNSLDARSAIALLQGGESAALAHLRQYLARGLPHS 233

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y   R+ +  +  +S+ S +L+ G LSPRQ +  L++   +        ++    EL+WR
Sbjct: 234 YKRTRNGLVGLDYSSKWSLWLATGALSPRQAYAELRQ--FEATRGATESSYWLWFELLWR 291

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +++R L   +         +          D     AW  G TG  ++DAAMR+L   G+
Sbjct: 292 DYFRFLHMQHGRALYRARGLGPELATP--HDDQNFAAWCSGQTGQTLVDAAMRELAATGY 349

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           + NRLR + AS+L+ DL  DWR G  +F SQLLD D+ SN G W + A  G D     R 
Sbjct: 350 LGNRLRQVAASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQGNWLYIAGRGTDPQGGRR- 408

Query: 409 FNPTIQGKRFDPQGTFIRHW 428
           F+P  Q   +D  G + R W
Sbjct: 409 FDPVKQAATYDADGAYQRLW 428


>gi|195941048|ref|ZP_03086430.1| deoxyribodipyrimidine photolyase [Escherichia coli O157:H7 str.
           EC4024]
          Length = 172

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 117/170 (68%), Positives = 137/170 (80%)

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
           WTE+++W  +  LL+AW+ G TGFPI+DAAMRQLN  GWMHNRLRMITASFLVKDLL+DW
Sbjct: 2   WTEEVQWQSNETLLKAWQHGLTGFPIVDAAMRQLNETGWMHNRLRMITASFLVKDLLIDW 61

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
           R GE YF+SQL+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FIR W+
Sbjct: 62  RTGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFDADGEFIRRWV 121

Query: 430 PELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           PEL +VP + IH P  W DK  ++LNYP PIVDHK+A   TL  Y AA+K
Sbjct: 122 PELKDVPAKAIHEPWVWADKQRVTLNYPRPIVDHKQARVATLAAYEAARK 171


>gi|71005224|ref|XP_757278.1| hypothetical protein UM01131.1 [Ustilago maydis 521]
 gi|46096457|gb|EAK81690.1| hypothetical protein UM01131.1 [Ustilago maydis 521]
          Length = 881

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 133/605 (21%), Positives = 212/605 (35%), Gaps = 151/605 (24%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKV-------------------------IAVFI 42
           SV +  LR DLRI DN   Y A       V                         + VF+
Sbjct: 27  SVLICLLRLDLRIHDNPLFYYAHQTHKPIVTTAEKTVDLSKLEDEALLGSTADYLLPVFV 86

Query: 43  ATPEQ--------------------WRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82
               +                    +        ++ F+  S+  V+  L   G      
Sbjct: 87  FDEREVELSGLPGYQRKGPEARTKEYGFWKTGGFRTRFVSESVYDVRSRLRSVGSDLFIR 146

Query: 83  QCSNFDDSIEWLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSV 140
                D     + ++  +   V  ++  ++    E+  +  + ++L+   V  +  +   
Sbjct: 147 FGIPEDVISNLVKAFQAEGTHVEGVWLQKEMTYPEINVENAIVEKLRGSGVPVQFVNGKT 206

Query: 141 LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI------------------ 182
           L+ P  +   + +   V+TPFRK +              PA                   
Sbjct: 207 LIHPADLPFESSETPDVFTPFRKKVEALGASMVRPVKHPPAKFKSFPPGVPSTPDYALDV 266

Query: 183 ------------------RLTGPVTPSNIPRFFDYPFQAID-----------------PM 207
                             +  G V+  +I RF   P                        
Sbjct: 267 SYEVDVDGLAPRALETKDKQEGQVSFHDILRFLLTPLNDSQLPPTLEASALLQQRHPASA 326

Query: 208 FP--IGEQNALHILR-KFCKEKVYY--------------YVEQRD-IPAIQGTSQLSPYL 249
           FP   GE +AL  L   F + K                 Y + R+ +     ++++SP+L
Sbjct: 327 FPLRGGESSALERLDWYFVRGKSADSSRWGKSDPPPVARYKQTRNNLIGHAYSTKMSPFL 386

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY----------- 298
           + G +SPRQ W  L +   +         +    EL+WR+++  +   +           
Sbjct: 387 AYGSVSPRQIWEALDDH--ERKFGEDQNTYWVRFELLWRDYFFFVAEKFGHLLYDLGGFE 444

Query: 299 ----PSVCMGKPFIPWTEKIEWNKD--SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
               P     K    W  K +  KD   H +    +G TG P IDA + +L   G+M NR
Sbjct: 445 RATDPRQAAKKMEDGWWRKWDPLKDGPDHEMTRLLEGRTGIPFIDANILELRESGFMSNR 504

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
            R   ASFL KDL  DWRIG E+F S L+D D  SN G WQ+ A  GND     R FN  
Sbjct: 505 GRQNVASFLSKDLGYDWRIGAEFFQSHLIDYDPTSNYGNWQYVAGVGNDPR-ASRQFNTV 563

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD-----------KNDLSLN-YPL-P 459
            Q K +D  G +++ W+P L N+   Y+H P                K D++++ YP  P
Sbjct: 564 KQAKDYDSHGDYVKLWIPALRNLHADYVHTPWLLTADERRRYGLKTTKMDVTIDGYPAQP 623

Query: 460 IVDHK 464
           + +H+
Sbjct: 624 LFEHE 628


>gi|311697144|gb|ADQ00016.1| deoxyribodipyrimidine photolyase [marine bacterium HP15]
          Length = 505

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 102/495 (20%), Positives = 188/495 (37%), Gaps = 31/495 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACH--NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           + +  L+ +LR+ D+   Y A         V+ ++I  P   RQ  I  +  +FI+ +L 
Sbjct: 1   MQVFLLKRNLRLQDSDPFYEAMRGYRRFGPVLPLYIHEPSIIRQPDICLQHQNFIFETLD 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
           ++ + +   G            +++  LD       + ++  +++     +  RDK + K
Sbjct: 61  ELSQEIRSIGGKLL----ELVGEAVPTLDVIHQIAPIARICTHQETTQGVQYERDKAVRK 116

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              ++ V    F    ++  G          + +       +++    DL          
Sbjct: 117 WCSRNSVKLVEFQQDGVVRAGCRDQKKQTFPEYFADSVNRELKDPGGIDLGVRFASTPLP 176

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK-EKVYYYVEQRDIP--AIQG 241
           + P       + +D PF+        G   A  + + F     +  Y  +   P  A +G
Sbjct: 177 SAPRVTIPRAQGYDRPFR-----QRGGRSEAEKLFKDFFSVGSINSYPFKLSSPNTAWEG 231

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEF--------VDLLIKPKSGAFSWLNELIWREFYRH 293
            S++S YLS G++S R     + +               K +  A  +L+ L+WR  Y  
Sbjct: 232 CSRISAYLSYGIVSDRAVMKAIDDVVSSGHSYMDAAAFEKLQGRARFYLDRLMWRRNYLQ 291

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +    P++        +      +++  L +AW+ G TGFP IDA +R L   GW++ R 
Sbjct: 292 MFEDDPTLEHRHALSQFDGVRISDREDPLFKAWQSGRTGFPFIDACVRCLKETGWLNMRG 351

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R    SF   +L  D      +   + LD     +    Q  + T +       ++ P  
Sbjct: 352 RAAITSFATMNLWHDSLNVAAFLAGEFLDYMPGIHWPIIQVVSGTAS-PQNGIMVYCPMK 410

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHA------PHSWLDKNDLSLNYPLPIVDHKKAC 467
           Q    D  G FIR ++PEL+++   +IH         S L +    L YP PIVDH    
Sbjct: 411 QALDHDKDGVFIRKYVPELSDLQAPHIHDLSRTTNHLSDLARRSGFLPYPAPIVDHIATA 470

Query: 468 HHTLNQYYAAKKQSL 482
                +    +K  +
Sbjct: 471 RVAKKRVSYLQKGKV 485


>gi|254506014|ref|ZP_05118159.1| cryptochrome dash [Vibrio parahaemolyticus 16]
 gi|219551237|gb|EED28217.1| cryptochrome dash [Vibrio parahaemolyticus 16]
          Length = 412

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 103/429 (24%), Positives = 183/429 (42%), Gaps = 35/429 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT------PEQWRQHGISARQSHFI 61
           +V L W  NDLR  +N  L  A +  D +++AV+              +H +   +  FI
Sbjct: 4   TVGLYWFINDLRRLNNSLLDRAINEVD-ELVAVYCLPHVTEYLAAFSGEHNLGTHRERFI 62

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + S+  + +SL+  G+     +        E ++    Q+ V+ L+ +     +E     
Sbjct: 63  HQSVEDLSESLAALGVELNIVEQGTTKAVAEIIE----QRGVSHLYVSEVAGFDETVMIN 118

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +++++     + +S D++ L     +     ++   +T FRK +                
Sbjct: 119 VIKQKFPTLEVIQS-DNTTLFHSDQLPFPLDELPATFTQFRKQVEPIF------------ 165

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA-LHILRKFCKEKVYYYVEQRDIPAIQ 240
                 +   +    +     A       GE+ A  H+   F +     Y E R+    +
Sbjct: 166 -----ELLYPSQDALYRLGEIATPTGVVGGERAAIQHVTWYFSQPFASSYKETRNHLEGE 220

Query: 241 GTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            +S   SP+L++G +SP Q    L++   +         +  + EL+WRE++      + 
Sbjct: 221 SSSTHFSPWLALGCISPAQIVALLRQY--EQRNGANQSTYWIIFELLWREYFYWYGRKHQ 278

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                   +   + ++   D    Q W +G T F I+++ M QLN  G+M NR R + AS
Sbjct: 279 QRVFYFSGLTSKQALK-PFDDEAFQRWVKGETDFAIVNSCMNQLNETGFMSNRGRQLVAS 337

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
            L+ +L +DWR G  YF +QL+D D+ SN G WQ+ A  G D  P  R FN   Q + +D
Sbjct: 338 CLIHELGLDWRRGAAYFETQLIDYDVTSNWGNWQYLAGVGADPNPSRR-FNLAKQAELYD 396

Query: 420 PQGTFIRHW 428
           P  +F R W
Sbjct: 397 PDSSFTRRW 405


>gi|326793764|ref|YP_004311584.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1]
 gi|326544528|gb|ADZ89748.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1]
          Length = 458

 Score =  233 bits (595), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 110/442 (24%), Positives = 186/442 (42%), Gaps = 33/442 (7%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA----------- 55
           MS+ ++W  +DLRI DN  LY A    D ++I ++ ++P+                    
Sbjct: 1   MSMGIIWFGDDLRINDNSLLYQASREVD-RLICLYCSSPDDNNVDNSDPIRSSNTPSTFD 59

Query: 56  --------RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107
                    ++ F +   L +  SL +              ++   ++    +  +T ++
Sbjct: 60  NTSIKPSEHRTLFRHMGALDLDHSLRRLHNKLWVSS----KNASATIEFLVSKYPITHIY 115

Query: 108 YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
            +    INE      L+ R    +   +     L    ++     ++ + +T FRK +  
Sbjct: 116 RHHHAGINEATTLTKLQARYTD-IRWITEYGLTLFSRHALPFSLNELPESFTKFRKLVET 174

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL-RKFCKEK 226
             V   ++++      +   +    +       F      F  GE  A   L   F    
Sbjct: 175 IDVPKTIKAVDRLPPPVA--INSPYVKTLPHTSFALDGSPFVGGESYAHAHLADYFSSGA 232

Query: 227 VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
              Y E R+ +     +++ SP+L+ G +SPRQ  N L   F +  +      +    EL
Sbjct: 233 ASTYKETRNTMDDWMSSTKFSPWLAQGAISPRQVMNSL--AFYESRMGSNDSTYWIYFEL 290

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           +WRE+++     Y +    K  I   + +  +  +   + W  G T FPI++AAM+QLNT
Sbjct: 291 LWREYFQWYSMKYGARLFSKSGI-HNKTLNSSFYAERFRKWCAGSTPFPIVNAAMKQLNT 349

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G++ NR R + AS L+ DL +DWR G  YF SQL+D D+ASN G WQ+ A  G D    
Sbjct: 350 TGYISNRARQLAASSLIYDLEIDWRYGATYFESQLIDFDVASNWGNWQYIAGVGADPRG- 408

Query: 406 FRIFNPTIQGKRFDPQGTFIRH 427
            R FN   Q + +DP   FI  
Sbjct: 409 GRHFNLDKQTQLYDPDKAFINK 430


>gi|88859578|ref|ZP_01134218.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2]
 gi|88818595|gb|EAR28410.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2]
          Length = 437

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 108/429 (25%), Positives = 173/429 (40%), Gaps = 22/429 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFI 61
             + L    +DLR+ DN AL     + D  +I +++  P+     Q+ Q   SA +  F+
Sbjct: 2   KKIGLFIFDHDLRVLDNPALKVLADSVDT-LICLYVHVPQDAFSQQFSQTQPSAAKLGFL 60

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L+++ ++L            S        + +Y     +T +        NE    +
Sbjct: 61  QQHLVELDENLRLLNQFLVIEHGSV----PSVVSNYIKHYGITDIGRTIHAGFNEQHHWQ 116

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L+      V   +   S L     +      + K +TP RK   Q  V       P+ A
Sbjct: 117 YLQATFPA-VKFCAHSGSSLFRLADLPFELADLPKSFTPCRKLFEQLTV-----PAPLEA 170

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-KFCKEKVYYYVEQRD-IPAI 239
           +    P   S   +  D    A +  +  GE  A   L   F  +    Y E R+ +   
Sbjct: 171 LTYLPPPLLSTEHKKHDLKPSAFNRYYNGGEITAHAYLHHYFSSKAPSIYKETRNALMGD 230

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +++LS +L+ G LSPRQ    LK    +         +    EL+WRE++      + 
Sbjct: 231 DFSTKLSGFLAHGALSPRQIMAALKRY--ESTQGANESTYWIYFELLWREYFYWYARKHQ 288

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                       + +  +      + W +G T +P+++A MR+LN  GWM NR R I AS
Sbjct: 289 QRLFS-AGGVRQKSLATSFYPSRFKQWCEGSTPYPLVNALMRELNETGWMSNRGRQIVAS 347

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
             V +L +DWR G  YF  +L+D D+ SN G WQ+ A  G D     R F+   Q   +D
Sbjct: 348 CFVNELELDWRYGAAYFEQRLIDYDVGSNWGNWQYLAGVGPDPRG-GRHFHIKKQAALYD 406

Query: 420 PQGTFIRHW 428
           P   F+  W
Sbjct: 407 PNNAFVTFW 415


>gi|255533599|ref|YP_003093971.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
 gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
          Length = 430

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 94/407 (23%), Positives = 170/407 (41%), Gaps = 22/407 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFIYASL 65
           LVW RNDLR+ DN+ L  A   SD+ ++ V+   P  +             ++ F+  S+
Sbjct: 7   LVWFRNDLRLHDNEMLVEAIAKSDS-ILPVYFFDPRYFENTRFGTAKTGIVRASFLLESI 65

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           L ++K+  + G      Q    D     +     Q  + +++++R+    E      +E 
Sbjct: 66  LSLRKAFQRFGGDILLVQGKPED----MIRDLVEQFDIAEVYHHREVGPEETEISGHVED 121

Query: 126 RLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L   ++  K F    L     +      +  V+  F+K   ++ +       P   I  
Sbjct: 122 LLWTLKINLKHFIGHTLYNKEDLPFPIKDIPDVFAQFKKKTERDAIVKACFLTPEH-IDF 180

Query: 185 TGPVTPSNIPRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYYVEQ--RDIP 237
                   +P   D  F+      I+     GE + L  L +  +     Y++Q  +  P
Sbjct: 181 VENADWGQLPSLKDLGFETVAGAMIEKYATGGEDSGLQHLAQLLEAGADIYLKQNTKHTP 240

Query: 238 AIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
              G +S+LS +L+IG LSPR  + ++KE   + +    +        L+WR+++R +  
Sbjct: 241 EKPGFSSRLSAWLTIGCLSPRMVYWKVKE--AEGVFGLNANFSQIFLGLLWRDYFRFMFK 298

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +    + +  +         +    L+ WK G T  P++D  M  LN  G++ +  R++
Sbjct: 299 KHGIAFLQETDLEKDIMQAIERVDPALEKWKTGCTAHPVVDKYMYDLNATGFIPHSGRLL 358

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
            A++LV  L + W  G  YF  +L+D   ASN G W   A  G D+ 
Sbjct: 359 VATYLVHVLKIHWTCGAAYFEEKLIDYAPASNWGNWASVAGIGKDAR 405


>gi|149188415|ref|ZP_01866708.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
 gi|148837633|gb|EDL54577.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
          Length = 472

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 108/442 (24%), Positives = 173/442 (39%), Gaps = 25/442 (5%)

Query: 1   MKATTAMS--VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGI 53
           M     MS    + W  +DLR+ DNK L  A  + D      F                 
Sbjct: 21  MTLGNGMSKRRGIYWFNHDLRLHDNKLLQKASEHVDRLHCVYFDELKTMYDRRFLPVEID 80

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
            + +  F   +L ++ +SL Q G V      ++ D+++  L+       +T L+      
Sbjct: 81  DSAKREFKMQALGELNQSLMQLGQVLHQVSVTSLDEAVSQLEQMFDYYSITDLYVANSAS 140

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSV--LLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
                 D ++ K L  R       D    L     +      +   +T F+  +   +V 
Sbjct: 141 WY---IDYVVTKALLKRTDIVLHRDDTESLFHQTLLPFDLEDLPHSFTRFKNKMESIVVP 197

Query: 172 ADLRS---LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKV 227
           +  ++   LP P     G           +     +      GE   L H+   F  +  
Sbjct: 198 SPSQTTTQLPRPMNNRDGLPASYGC----EPSSLKLHSSVRGGELAGLGHVRDYFATQAA 253

Query: 228 YYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             Y   R+ +     +++ S +L+ G +SPR   N+L     +         +  L EL+
Sbjct: 254 LSYKSTRNELDNWSSSTKFSLWLANGNVSPRAVVNQLHR--FEQKHGSNESTYWILFELL 311

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WRE++      Y +       I     +     +  L+ W +G T FPI++A M QL   
Sbjct: 312 WREYFHWYSHKYGAKLFAFGGIQDKRPLTTFY-ASRLRQWVEGNTPFPIVNACMNQLRET 370

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+M NR R + AS LV +L +DWR G  YF   L+D D+ SN G WQ+ A  G D     
Sbjct: 371 GYMSNRGRQLVASCLVHELSLDWRYGACYFQHMLIDYDVGSNWGNWQYLAGVGADPRGN- 429

Query: 407 RIFNPTIQGKRFDPQGTFIRHW 428
           R F+   Q + +DP+  FIR W
Sbjct: 430 RKFDLDKQSQLYDPESVFIRKW 451


>gi|322707152|gb|EFY98731.1| cryptochrome-2 [Metarhizium anisopliae ARSEF 23]
          Length = 566

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 109/469 (23%), Positives = 163/469 (34%), Gaps = 78/469 (16%)

Query: 87  FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD-DSVLLPPG 145
            +             +VT L + +  +    +RD ++ K  +   +         L    
Sbjct: 33  REAPQTLFPKLLKAWKVTHLVFEKDTDAYARQRDDVVAKAAKAAGVKVVIHSGRTLWDSD 92

Query: 146 SIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--------------------- 183
            I+ +H  +     T    A  +        + P                          
Sbjct: 93  EIVAHHDGKPAMSMTQLLSAAKKVGQVPRPIAAPKSLPDPGDMPLDFGQHVPSSVPDVNA 152

Query: 184 ------------LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY-- 229
                       + GP     I    +  F A    +  GE  AL  L    K K Y   
Sbjct: 153 QTREKKDTAYKSIAGPKGDFAIETLEELGFPAATTPYRGGESIALKNLADIAKNKKYTAT 212

Query: 230 YVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
           + + +  PA    Q T+ LSP+L  G LS R+ + R+++          +   S   +LI
Sbjct: 213 FEKPKTSPAQFEPQSTTLLSPFLHFGALSVREFYWRVQDVVEAYGKGASTPPASLTGQLI 272

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEW---------------------NKDSHLLQA 325
           +R+ Y    A   +        P+   I W                     +      Q 
Sbjct: 273 FRDMYFAAQAAVGAKFTQTAGNPYCRFIPWHLPSERDSQTGLVTDKYTVDSDDAEKWFQR 332

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384
           WK+G TGFP IDA MRQL   GW+H+  R   A FL +    VDW  G E F   LLD +
Sbjct: 333 WKRGVTGFPWIDALMRQLLHTGWIHHLGRHSLACFLTRGGCYVDWERGAEVFEVHLLDHE 392

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            A N G WQW  S       YFR ++P   G+++D  G  IR W+PEL N+ ++YI+ P 
Sbjct: 393 PACNAGNWQW-LSCTAFFSQYFRCYSPVSFGQKWDKNGDLIRKWVPELKNLDSKYIYEPW 451

Query: 445 SWLDKNDLSLN---------------YPLPIVDHKKACHHTLNQYYAAK 478
               ++                    YP P+ D  K     +N    A 
Sbjct: 452 KAPIQDQKKAGVRVVGDGLGDQEQGTYPKPMFDFGKRRETCINAMKIAY 500


>gi|194380702|dbj|BAG58504.1| unnamed protein product [Homo sapiens]
          Length = 336

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 120/249 (48%), Gaps = 10/249 (4%)

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +   + LSPYL  G LS R  + RL + +  +  +  +   S   +L+WREF+       
Sbjct: 7   LASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLLWREFFYTAATNN 65

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P     +   P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A
Sbjct: 66  PRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVA 124

Query: 359 SFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
            FL + DL V W  G   F   LLD D + N G W W  S       +F  + P   G+R
Sbjct: 125 CFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRR 183

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTL 471
            DP G +IR +LP+L   P++YI+ P +  +      K  + ++YP PIV+H +     +
Sbjct: 184 TDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYPRPIVNHAETSRLNI 243

Query: 472 NQYYAAKKQ 480
            +     +Q
Sbjct: 244 ERMKQIYQQ 252


>gi|94501553|ref|ZP_01308071.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
 gi|94426371|gb|EAT11361.1| Deoxyribodipyrimidine photolyase [Oceanobacter sp. RED65]
          Length = 440

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 104/426 (24%), Positives = 172/426 (40%), Gaps = 21/426 (4%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH-----GISARQSHFIYAS 64
            L     DLR+ D+  L  A   S+ ++  V+  +P ++         +  ++  F+   
Sbjct: 7   SLFVFSKDLRLHDHPGLKQANDLSE-RLACVYFLSPYEFEPKSFSVCPMGKQRYEFLRQG 65

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L  ++ SL+         Q    +     L+    Q ++  +F +R     E +    L+
Sbjct: 66  LCDLRNSLNDIDHELHVFQ----EKVAPGLERIIEQNKIEAVFASRCAGTYENQVWVSLQ 121

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           KR Q  +     D   L       + +   Y  ++ FR+   +      L    + ++  
Sbjct: 122 KR-QPNLKIHLVDSHTLFNIDQ-PDLSKSFYNSFSQFRRQAEKW--PQPLPMATILSLPA 177

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY-YYVEQRD-IPAIQGT 242
             PV   +     D   ++       GEQ  L  L  +        Y   R+ +   + +
Sbjct: 178 AMPVATDSARINLD-DNRSSALCITGGEQKGLEHLYDYFNGSYALQYKATRNALDGWENS 236

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S+ S +L+ G LS R     L++   + L            EL+WREF++    FY    
Sbjct: 237 SKFSYWLAQGSLSVRLILQELRQ--FESLHSNNESTEHLYMELLWREFFQWYSHFYGKQL 294

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                I     +         + W +G+T +P+++A M QL T G+M NR R I AS L+
Sbjct: 295 FYFSGIQKKRPLTTFY-PQAFRMWLEGHTEWPLVNACMNQLRTTGYMSNRGRQIVASCLL 353

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +L VDWR G + F   LLD D+A+N G WQ+ A  G D     R FN   Q + +DP  
Sbjct: 354 NELKVDWRAGAQAFEHYLLDYDVAANWGNWQYIAGVGADPRG-GRHFNIEKQTQLYDPDN 412

Query: 423 TFIRHW 428
            FI  W
Sbjct: 413 LFIDKW 418


>gi|88798414|ref|ZP_01113999.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
 gi|88778854|gb|EAR10044.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
          Length = 433

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 111/450 (24%), Positives = 190/450 (42%), Gaps = 35/450 (7%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYASLL 66
           +W   D R+ DN AL  A    +  ++ VF+     ++        +   +  F+  SL 
Sbjct: 1   MWFTQDQRLDDNPALRLAAEADE--MLCVFVVEQGWFQSRRYQYPQMGPHRWVFLQLSLS 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           ++ + L   G          +  +   +     +  + ++   R    +E+R+ + LE +
Sbjct: 59  ELNQRLQLHGQRLLV----VYGQAEVEIGRLVERYDINRVVRARSPGTDELRQWRWLESQ 114

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                 C++ D + L     +   +      ++ FR  L +  V   + ++P     +T 
Sbjct: 115 FPETEWCQA-DAATLFEDDQVAGLSRSWPMSFSAFR-RLAERWVVPAVTAMPQLPNTITQ 172

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC-KEKVYYYVEQRD-IPAIQGTSQ 244
            ++   +P +     +A   MF  GE  AL  L  +   +    Y   R+ I     +S+
Sbjct: 173 QISQLTLPDWL-PNARASHSMFDGGESEALRHLDCYLASDYPQTYKRDRNAIDDWDSSSK 231

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL-------MAF 297
           +SP+L+ G LS R+   +L E   D       G      EL+WRE+++ L       +  
Sbjct: 232 MSPWLNAGNLSARRLKQKLDEY--DQQHGASDGTHWLFVELLWREYFQWLAQSIGTKLFH 289

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
           +  +   KP   +         S   + W++G T + I++A MRQL   G++ NR R I 
Sbjct: 290 FQGLSEHKPLTSFY--------SDRFRNWREGNTPWAIVNACMRQLKETGYLSNRGRQIA 341

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           AS LV +L +DWR G  +F   L+D D+ASN G WQ+ A  G DS    R FN   Q + 
Sbjct: 342 ASALVNELALDWRYGAAWFEYCLVDYDVASNWGNWQYIAGVGTDSRG-GRHFNIDKQTEL 400

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           FD  G+F   W  +    P   +  P  W 
Sbjct: 401 FDADGSFRARWAADAEPQPLDTL-DPTGWP 429


>gi|322709598|gb|EFZ01174.1| Putative cryptochrome DASH [Metarhizium anisopliae ARSEF 23]
          Length = 695

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 111/513 (21%), Positives = 182/513 (35%), Gaps = 88/513 (17%)

Query: 11  LVWLRNDLRITDNKALYA---ACHNSDAKVIAVFIATPEQWRQHGI-------------- 53
           +  LR DLR+ DN  L+    A  +    ++ V++   +Q    G               
Sbjct: 8   VYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFPAQQVELSGFLKDGEQSPYPPARS 67

Query: 54  --------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VT 104
                      ++ F   ++  +++SL + G        S  D     ++        V+
Sbjct: 68  QVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVFDHLVNELKDAVPCVS 127

Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD----------DSVLLPPGSILNHALQM 154
            ++   +    EV+  + +      R I               D+ L  P  + +     
Sbjct: 128 SVWMTEEPSWEEVQEQESISSLCSKRGIEFKLWKDEKYFVDDRDTGLENPADLPDVFTTY 187

Query: 155 YKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI---PRFFDY------------ 199
            K   P R+   + L +    +LP      + P             D             
Sbjct: 188 RKSQEPLREKPRKVLPRPAKSALPAFPQEGSIPAQAHPFLSPVSLEDLQKRLVKPVENIM 247

Query: 200 ------PFQAIDPM-FPIGEQNALHILRKFCKE-KVYYYVEQRD-IPAIQGTSQLSPYLS 250
                 P  A D   F  GE +    LR   K   +  Y + R+ +  +  + +LS YLS
Sbjct: 248 DNPPKRPEDATDGHPFTGGETSGWARLRHLGKSSAMTSYKDTRNGLVGVDYSLKLSGYLS 307

Query: 251 IGVLSPRQCWNRLK-------EEFVDL---LIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           +G L+ RQ    L        E++ D          G      EL+WR++ R   A +  
Sbjct: 308 LGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRLCTAKFGR 367

Query: 301 VCMGKPFIPWTEKIE--WNKDSHL----------------LQAWKQGYTGFPIIDAAMRQ 342
                         +  W                      L+ ++ G TG  +IDA+ R+
Sbjct: 368 KLFRLSGFRQDSSYDKKWKTADEEKAGPEQEPDPAQISKILERFQNGTTGMGLIDASQRE 427

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G+  NR R   ASF  K L +DWR G E++   L+D D++SN   WQ+ A  GND 
Sbjct: 428 LFHTGYTSNRARQNAASFFSKHLEIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGIGNDP 487

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
               R FNP  Q   +D +G ++R W+PEL  +
Sbjct: 488 RGDARTFNPVKQAFDYDKEGIYVRMWVPELQGL 520


>gi|74696815|sp|Q7SI68|CRYD_NEUCR RecName: Full=Putative cryptochrome DASH, mitochondrial; Flags:
           Precursor
 gi|38567324|emb|CAE76612.1| related to deoxyribodipyrimidine photo-lyase [Neurospora crassa]
          Length = 745

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 106/524 (20%), Positives = 185/524 (35%), Gaps = 97/524 (18%)

Query: 8   SVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGI---------- 53
            V +  +R +LR++DN   +        +  + ++ V++   +Q    G           
Sbjct: 5   KVVIYAMRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHP 64

Query: 54  ------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC-LQ 100
                          ++ F+  S+  ++ SL   G           D     ++     +
Sbjct: 65  APKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKE 124

Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS---VLLPPGSILNHALQMYKV 157
            +V  ++        E   +K +        I     D    ++    + + H   +  V
Sbjct: 125 CQVGAVWMTSHEGSEEKSEEKTVASFCAKSGIDFKLWDDEKYLIHDRDTGITHLNDLPDV 184

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP----------------------- 194
           +T +R   I+ L +   ++LPVP           ++                        
Sbjct: 185 FTTYR-KQIEPLREKARKTLPVPEKGALPAYPDIDMIPSQQPPFNIPGTCEELVDAVVRP 243

Query: 195 ------RFFDYPFQAIDPM-FPIGEQNALHILRKF-CKEKVYYYVEQRD-IPAIQGTSQL 245
                    D+P +A     F  GE +A   +        +  Y + R+ +     +++L
Sbjct: 244 VKNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNGLLGPDFSTKL 303

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIK----------PKSGAFSWLNELIWREFYRHLM 295
           S YL+ G ++ RQ  + L         K             G  +   EL+WR++ R   
Sbjct: 304 SAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYMRLCH 363

Query: 296 AFYPSVCM--------GKPFIPWTEKIEWNKD----------------SHLLQAWKQGYT 331
             Y                +    +K  W                   S +L  +  G T
Sbjct: 364 QKYGDKLFRVEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFNAGTT 423

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G  +IDA+ R+L   G+  NR R   ASFL K L +DWR G E++   L+D D++SN   
Sbjct: 424 GMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSSNWAN 483

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           WQ+ A  GND     RIFNP  Q   +D  GT++R W+PE+   
Sbjct: 484 WQYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEVAKF 527


>gi|227553399|ref|ZP_03983448.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis
           HH22]
 gi|227177482|gb|EEI58454.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis
           HH22]
          Length = 208

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 102/198 (51%), Positives = 129/198 (65%), Gaps = 7/198 (3%)

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+FY  + + +P     +        I+W  D  +   W++G TG+PIIDAAMRQLN  G
Sbjct: 1   RDFYNMIYSAFPQQ-KEEAIQEKFRYIQWTNDPEMFVKWQKGETGYPIIDAAMRQLNQTG 59

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           WMHNRLRMITASFLVK+L +DWR GE+YF   L+D D A+N GGWQWAASTG D+VPYFR
Sbjct: 60  WMHNRLRMITASFLVKNLHIDWRWGEKYFQKMLIDYDAANNIGGWQWAASTGTDAVPYFR 119

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIV 461
           IFNP IQ K+FD  G FI+ ++PEL  VP +YIH P+   +         L  NYP PIV
Sbjct: 120 IFNPIIQSKKFDNDGQFIKKYVPELKQVPQKYIHQPNLMNEALQTQYHVHLGENYPKPIV 179

Query: 462 DHKKACHHTLNQYYAAKK 479
           D+  +   TL  Y A+K+
Sbjct: 180 DYASSKKQTLFLYEASKE 197


>gi|254454708|ref|ZP_05068145.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238]
 gi|198269114|gb|EDY93384.1| deoxyribodipyrimidine photolyase [Octadecabacter antarcticus 238]
          Length = 322

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/287 (27%), Positives = 120/287 (41%), Gaps = 16/287 (5%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--GTSQLSPYLSIGVLSPRQCWNRLK 264
           M   G + A+  LR F   +   Y+     P       S+LS +L+ G LS R+    + 
Sbjct: 1   MQKGGRKQAVADLRSFLNHRSRQYLYHISAPDSSEFHCSRLSAHLAWGTLSVREVAQSIV 60

Query: 265 EEFVDLLIKPKSG----AFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE-WNKD 319
           +    L             ++ + L WR  +   +   P +       P  E +     +
Sbjct: 61  KRRAQLSPDENKSFGRNLTAFGSRLAWRCHFIQKIEDQPEIETH-CMHPAFEGLRVGEHN 119

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
               QAW  G TG+P +DA MR L   GW+  R+R +  SF    L +DWR+  E+    
Sbjct: 120 DLHFQAWASGQTGYPFVDACMRNLTAEGWITFRMRAMLVSFASYQLWLDWRVTGEHLARL 179

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQY 439
             D +   +    Q    +G   +   R++NP  Q    DP+GTFIR W+PEL +VP ++
Sbjct: 180 FTDYEPGIHYSQLQMQ--SGVTGINTMRVYNPIKQSMEHDPKGTFIRKWVPELKSVPDEF 237

Query: 440 IHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           IH P  W           L  +YP P+VD   +      Q  A +K 
Sbjct: 238 IHEPWKWEKTLIDDRDFTLGQDYPAPLVDQAVSAKAAKQQISAIRKN 284


>gi|255080632|ref|XP_002503889.1| predicted protein [Micromonas sp. RCC299]
 gi|226519156|gb|ACO65147.1| predicted protein [Micromonas sp. RCC299]
          Length = 869

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 118/511 (23%), Positives = 195/511 (38%), Gaps = 54/511 (10%)

Query: 10  HLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWR-----QHGISARQSHFI 61
            +VW R DLR+ DN+A  AA   +     +V+ +F+ +P++                 ++
Sbjct: 87  AVVWFRQDLRLDDNQAFRAAVRAANRRGGEVLCLFVWSPDEEGNDEGASWAPGEASRVWL 146

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + SL  + +    +             +    + +       T +F + +YE   V  D 
Sbjct: 147 HHSLDALDRD--IRRRYGGGGIRFAAGEHASAVAAAAADVNATAVFASARYEPAHVEGDA 204

Query: 122 LLEKRLQHRVI-CKSFDDSVLLPPGSI---LNHALQMYKVYTPFRKALIQNLVQADLRSL 177
              + L    I   +    +L     I   +      +    PF  A  +   +    S 
Sbjct: 205 RTRRALAEGGIELITLPGHLLFDRDKIRIDMERERYFFGTLMPFVHAAEKFGGEPGAPSP 264

Query: 178 P----------------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
                            V  +   G + PS+  R +    +A    + + E  A     +
Sbjct: 265 APPTAPIAHDGSGGAGGVSTLASLGLIPPSDAARDWSAGLRAE---WDMSESGASEAWAQ 321

Query: 222 FCKEKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
           F +  +  Y       D+     TS LSPYL  G LSPR+ ++ L++      +    G 
Sbjct: 322 FKRMGLAGYEATHGRCDLTHKSSTSLLSPYLRFGQLSPRRVYSELRDARFGTAVDGVEGR 381

Query: 279 F---SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS------HLLQAWKQG 329
               ++ + L  REF    +  +P + +      +  + +W            L+ W++G
Sbjct: 382 RLSRTFWHRLYRREFAYWQLGVFPQLAVTSWRSHYESRGDWRWPERDPAAAEDLRRWQKG 441

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TGFP++DA MR+L   GWMH   RM+ A+FLV  L + W  G  +F   L+D DLA N+
Sbjct: 442 ETGFPVVDAGMRRLIRTGWMHQTERMLAATFLVDYLHIHWSHGARWFHDYLVDADLAINS 501

Query: 390 GGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI-HAPHSWL 447
             WQ A  +G D    F     P    +  DP G  I  ++PEL  +P  ++ H P    
Sbjct: 502 MMWQNAGKSGLDQWDVFAGGLAPDGSARTHDPNGETIAQYVPELAGLPPGHLRHRPWEAS 561

Query: 448 DKN------DLSLNYPLPIV-DHKKACHHTL 471
            K        +   YP  IV D   A    L
Sbjct: 562 AKTLANAGVTIGDTYPARIVPDVDAARARML 592


>gi|311029789|ref|ZP_07707879.1| deoxyribodipyrimidine photo-lyase [Bacillus sp. m3-13]
          Length = 220

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 97/217 (44%), Positives = 125/217 (57%), Gaps = 7/217 (3%)

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
                    +G  +++ EL WR+FY  +  +YP     K      +K++WN +  LL  W
Sbjct: 5   QEKQQTSYSTGMDTFIKELAWRDFYNMIFHYYPE-SKTKEIDDKYQKLKWNDNQDLLDLW 63

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           K+G TGFPI+DA MRQL   GWMHNR+RMI ASFL KD L+DWR+GE YF   L D D A
Sbjct: 64  KKGKTGFPIVDAGMRQLAEEGWMHNRIRMINASFLTKDFLMDWRLGERYFEQMLHDYDEA 123

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           SN GGWQWAAS G D+VPYFR+FNP  Q  RFD +G +I+ +LPEL  V  + IH P   
Sbjct: 124 SNIGGWQWAASVGTDAVPYFRVFNPITQSIRFDTKGEYIKKYLPELVGVSEKKIHEPWKM 183

Query: 447 LDKND------LSLNYPLPIVDHKKACHHTLNQYYAA 477
            D         +  +YP P+VDH       +  +   
Sbjct: 184 DDHEQEKAGCVIGKDYPRPVVDHALQRKKAIQMFKEL 220


>gi|164655927|ref|XP_001729092.1| hypothetical protein MGL_3880 [Malassezia globosa CBS 7966]
 gi|159102981|gb|EDP41878.1| hypothetical protein MGL_3880 [Malassezia globosa CBS 7966]
          Length = 400

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 127/375 (33%), Positives = 169/375 (45%), Gaps = 79/375 (21%)

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                 + P     P  A +  +  G + A HIL +F K KV  Y E RDIP   GTSQL
Sbjct: 8   AQCLDWSSPESEHNPTWASEFPWIPGSETAHHILTEFLKTKVSRYSESRDIPFESGTSQL 67

Query: 246 SPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
           SPYL+ G +SP +  + L+E     D        + ++  ELIWREF  HL+   P +  
Sbjct: 68  SPYLAHGEISPHRVLHALREVRLNRDTPKPAIESSKTFERELIWREFNYHLLYHQPDLAT 127

Query: 304 GKPFIPW-------------------TEKIEWNKDSH-------LLQAWKQGYTGFPIID 337
                 W                   T ++  + D             W+ G+TGFPI+D
Sbjct: 128 QNHNEQWNLFTWSQMATESQLTEFSRTGELPPSTDEQNALNTAAAYDCWRAGHTGFPIVD 187

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           A MRQL  IGWMHNR+RMITAS L+K+L + WR+GEE+F + L+D D ASN G WQW A 
Sbjct: 188 AGMRQLWKIGWMHNRVRMITASLLIKNLRIHWRLGEEWFWNTLVDADPASNPGNWQWVAG 247

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN------------------------ 433
           TG D+ P+FRIFNP  Q  RFD +  ++R W+PEL                         
Sbjct: 248 TGADAAPFFRIFNPARQADRFDQKCAYVRTWVPELKTKTTQEVAAMYEASPRKAAKEQDE 307

Query: 434 --------NVPTQYIH---------------APHSWLDKNDL----SLNYPLPIVDHKKA 466
                   ++ +Q+IH                P S             NY   IVD KK+
Sbjct: 308 DFLALTNPSLTSQWIHSSPNSGSTSNSVKYATPFSHAFSQRYVAVPETNYHNLIVDFKKS 367

Query: 467 CHHTLNQYYAAKKQS 481
               L+ Y   +K S
Sbjct: 368 RDLALSCYQTIRKNS 382


>gi|257359518|gb|ACV53158.1| cryptochrome-like protein [Crassostrea gigas]
          Length = 393

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 90/400 (22%), Positives = 147/400 (36%), Gaps = 33/400 (8%)

Query: 18  LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77
           LR+ DN +L       D     VFI   E          +  F+   L  + K+L   G 
Sbjct: 2   LRLHDNPSLIDGLSECDRF-YPVFIFDGEVAGTKTAGYNRFRFLLECLQDLDKNLKAAGT 60

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSF 136
                Q    D     L+    +  VTK+ +    E     RD+L+ + L +  V C   
Sbjct: 61  RLYCFQGQPTD----ILERLIEEWGVTKVTFEADPEPIWQERDRLVRELLDKKNVQCVEK 116

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
               L  P  I+ +      +       +   +        PV     T    P +    
Sbjct: 117 VSHTLWDPYEIIENNGGSPPLTFSLFNLVTSTI---GPPPRPVEDPDFTDISLPVSQNHD 173

Query: 197 FDYPFQAIDPM---------------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             +   +++ +               +  GE  AL +L    K +   Y     +P    
Sbjct: 174 KQFGIPSLEDLNVRPECEEQNKRLVEWLGGESKALELLAIRMKHEEKAYENGYVMPNQYH 233

Query: 242 TSQLSP------YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
              LSP      +L  G LS R+ +  + ++F ++         S   +L+WRE++  + 
Sbjct: 234 PDLLSPPLSLSAHLRFGCLSVRKFYWSIHDKFEEVKPS-MGAPVSLSAQLMWREYFYTMA 292

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
               +    +   P    I W  +    + W QG TG+P IDA M+QL   GW+H+  R 
Sbjct: 293 INNINYDKMET-NPICLNIPWYDNPEHEEKWTQGETGYPWIDAIMKQLRYEGWVHHVARH 351

Query: 356 ITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
             + FL + DL ++W +G + F   LLD D +   G W W
Sbjct: 352 AVSCFLTRGDLWLNWEVGLKVFYKYLLDADWSVCAGNWMW 391


>gi|164428444|ref|XP_965722.2| hypothetical protein NCU00582 [Neurospora crassa OR74A]
 gi|157072149|gb|EAA36486.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 722

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 105/518 (20%), Positives = 183/518 (35%), Gaps = 97/518 (18%)

Query: 14  LRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGI---------------- 53
           +R +LR++DN   +        +  + ++ V++   +Q    G                 
Sbjct: 1   MRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHPAPKSAV 60

Query: 54  ------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC-LQQRVTKL 106
                    ++ F+  S+  ++ SL   G           D     ++     + +V  +
Sbjct: 61  GGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKECQVGAV 120

Query: 107 FYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS---VLLPPGSILNHALQMYKVYTPFRK 163
           +        E   +K +        I     D    ++    + + H   +  V+T +R 
Sbjct: 121 WMTSHEGSEEKSEEKTVASFCAKSGIDFKLWDDEKYLIHDRDTGITHLNDLPDVFTTYR- 179

Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIP----------------------------- 194
             I+ L +   ++LPVP           ++                              
Sbjct: 180 KQIEPLREKARKTLPVPEKGALPAYPDIDMIPSQQPPFNIPGTCEELVDAVVRPVKNFLK 239

Query: 195 RFFDYPFQAIDPM-FPIGEQNALHILRKF-CKEKVYYYVEQRD-IPAIQGTSQLSPYLSI 251
              D+P +A     F  GE +A   +        +  Y + R+ +     +++LS YL+ 
Sbjct: 240 DLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNGLLGPDFSTKLSAYLAQ 299

Query: 252 GVLSPRQCWNRLKEEFVDLLIK----------PKSGAFSWLNELIWREFYRHLMAFYPSV 301
           G ++ RQ  + L         K             G  +   EL+WR++ R     Y   
Sbjct: 300 GCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYMRLCHQKYGDK 359

Query: 302 CM--------GKPFIPWTEKIEWNKD----------------SHLLQAWKQGYTGFPIID 337
                        +    +K  W                   S +L  +  G TG  +ID
Sbjct: 360 LFRVEGFNGKHTDYEGEDKKYGWRTANTSIALPGQEPTPEKVSEILARFNAGTTGMGLID 419

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
           A+ R+L   G+  NR R   ASFL K L +DWR G E++   L+D D++SN   WQ+ A 
Sbjct: 420 ASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSSNWANWQYVAG 479

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
            GND     RIFNP  Q   +D  GT++R W+PE+   
Sbjct: 480 VGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEVAKF 517


>gi|226494726|ref|NP_001146620.1| hypothetical protein LOC100280217 [Zea mays]
 gi|219888051|gb|ACL54400.1| unknown [Zea mays]
          Length = 421

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 97/415 (23%), Positives = 164/415 (39%), Gaps = 28/415 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKAL----YAACHNSDAKVIAVFIATPEQWRQHGISA- 55
           M+A TA +  ++W R  LR+ DN AL          + A++  VF+  P   R   ++A 
Sbjct: 1   MEAATAATAAMMWFRKGLRVHDNPALDAARRHGAGAASARLYPVFVLDPRYLRPDAVAAS 60

Query: 56  --------RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107
                    +  F+  SL  +      + +  +       DD  + + +      + KL 
Sbjct: 61  PGSARAGVARIRFLLESLSDLDA--RLRRLGSRLLLLRARDDVADAVCAALKDWNIGKLC 118

Query: 108 YNRQYEINEVRRDKLLEK-RLQHRVICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKAL 165
           +    E   + RDK +    L   +   +     L  P  I+     +    Y  F    
Sbjct: 119 FESDTEPYALARDKKVTDFALASGIEVLTPVSHTLFDPEEIIKKNGGRPPLTYQSFVSIA 178

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRK 221
            +    A      +P +  TG      +P   +  +  I     P F  GE  AL  +++
Sbjct: 179 GEPPAPAMEEYSELPPLGDTGEYELLPVPTVEELGYGDISQEEIPPFHGGETEALRRMKE 238

Query: 222 FCKEKVY--YYVEQRDIPAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
             + K +   + + +  P+      T+ LSPYL  G LS R  ++ +++    +    K 
Sbjct: 239 SLQNKEWVAKFEKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHCIQDVHRSVRNHTKP 298

Query: 277 GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
              S   +L+WR+F+  +    P+    K      ++I W+++  L  AW+ G TG+P I
Sbjct: 299 -PVSLTGQLLWRDFFYTVSYGTPNFDRMKG-NKICKQIPWSENEDLFVAWRDGQTGYPWI 356

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           DA M QL   GWMH+  R   A FL +  +     GE       L+  L   NGG
Sbjct: 357 DAIMIQLRNWGWMHHLARHSVACFLTRGDMCCRCEGESSSRLHPLNSHLHPLNGG 411


>gi|302918988|ref|XP_003052768.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI
           77-13-4]
 gi|256733708|gb|EEU47055.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI
           77-13-4]
          Length = 640

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 112/508 (22%), Positives = 178/508 (35%), Gaps = 90/508 (17%)

Query: 11  LVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGI--------------- 53
           +  LR DLR TDN  L+      +    ++ V++  P Q    G                
Sbjct: 8   VYLLRRDLRATDNPILHHLATADHGFTHLLPVYVLPPHQIEVSGFLTENQKSPYPKALSQ 67

Query: 54  -------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL-QQRVTK 105
                     ++ F   S+  ++ SL   G        S  D   + + +       V  
Sbjct: 68  VGRFWRCGPHRAKFTAESVWDLKDSLEDLGSGLVLRIGSFSDVVRQLIQALNDNHHSVDA 127

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164
           ++        EV     +      + V  K + D        I ++  ++  V+T +RK 
Sbjct: 128 VWMTEDVSSEEVDDQDAVSAVCSEKSVGFKLWRDDKYF----IDDNPKELPDVFTSYRKT 183

Query: 165 LIQNLVQADLRSLPVPAI-----------RLTGPVTPSNIPRFFD--------------- 198
             + L +   RSLP P                 P    +    F+               
Sbjct: 184 -QEPLRERPRRSLPRPQAGSLPPLPPWTPPQDAPFQVPDTYEEFERRLLQPIDYMLANPP 242

Query: 199 -YPFQAIDPM-FPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVL 254
             P  A     F  GE  A   LR   +   +  Y E R+ +     +++LS YL++G +
Sbjct: 243 VLPQDAKSAHPFDGGESFAWERLRHLIRTGGMCTYQETRNGLLGKDYSTKLSGYLALGCI 302

Query: 255 SPRQCWNRLKE----------EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           S R     L +                     G  +   EL+WR++ R     + +    
Sbjct: 303 SARSIHEELLKLEDGTDQAYARARGFDRGENEGTKAVRFELLWRDYMRLCTKKFGAQLFR 362

Query: 305 ---------------KPFIPWTEKIEWNKDSHLLQAWK----QGYTGFPIIDAAMRQLNT 345
                          K     T  I+ +     +        +G TG   IDA+ R+L  
Sbjct: 363 VSGFKGATGQYEKKWKTADKKTAAIDQDPSPEEVGTIIDRFLEGTTGMGFIDASQRELYH 422

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G+  NR R   ASF  K L +DWR G E++   L+D D++SN   WQ+ A  GND    
Sbjct: 423 TGYTSNRARQNVASFFSKHLGIDWRYGAEWYEMMLVDYDVSSNWANWQYVAGVGNDPRGD 482

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELN 433
            RIFNP  Q   +D  G ++R W+PE+ 
Sbjct: 483 ARIFNPVKQAFDYDNNGAYVRTWVPEVK 510


>gi|115727477|ref|XP_783613.2| PREDICTED: similar to cryptochrome dash [Strongylocentrotus
           purpuratus]
 gi|115935378|ref|XP_001186661.1| PREDICTED: similar to cryptochrome dash [Strongylocentrotus
           purpuratus]
          Length = 463

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 95/437 (21%), Positives = 163/437 (37%), Gaps = 65/437 (14%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAA------------------------------------ 29
            M + +  LRNDLR  DN+ L+ A                                    
Sbjct: 4   RMKIVICLLRNDLRYRDNEVLFWAHKNATNVIPLYCFDPRHYKGTHQFGFPKTGPHRLKF 63

Query: 30  --------CHNSDAKVIAVFIATP------EQWRQHGISARQSHFIYASLLQVQKSLSQK 75
                    H +   VI ++   P       Q+        +  F+  S+  ++ +L   
Sbjct: 64  LLESVLFWAHKNATNVIPLYCFDPRHYKGTHQFGFPKTGPHRLKFLLESVRDLRTTLQSV 123

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICK 134
           G        +  +D +  L     +  V  +    +    E+  +  L +      V  K
Sbjct: 124 GSGLVVRSGNP-EDVVPQLIQQFGEGEVAAVALQEEATREELDVEAGLHQSCSKLGVQVK 182

Query: 135 SFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
            F  S L     +   H  ++  VYT FRK +          ++P P   L   V   +I
Sbjct: 183 KFWGSTLYHREDVPFRHLAEVPNVYTEFRKKVENRSHVRPPINMPKPLKGLPQGVEEGDI 242

Query: 194 PRFFDYPFQAIDPM------FPIGEQNALHILRKFCK--EKVYYYVEQRD-IPAIQGTSQ 244
           P F  +  +           F  GE   L  +  +    + +  Y E R+ +   + +++
Sbjct: 243 PVFSSFGLKDPGSDSRTAFPFQGGETTGLARIEDYFWKSDCIAKYKETRNGLIGSEYSTK 302

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
            + +L+ G +SPRQ    +K    +         +  + ELIWR++++ +   +      
Sbjct: 303 FAAWLAHGCVSPRQIHAEVKRYEKERT--ENQSTYWVIFELIWRDYFKFVALKFGDKMFY 360

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              +    K  WNK+     AW +G TG P +DA +R++   G+M NR R   ASFL KD
Sbjct: 361 LSGLLGVHK-PWNKNKQWFDAWCKGQTGVPFVDANIREMAATGFMSNRGRQNVASFLTKD 419

Query: 365 LLVDWRIGEEYFMSQLL 381
           L++DWR+G E+F   L 
Sbjct: 420 LVLDWRLGAEWFEQMLY 436


>gi|253998728|ref|YP_003050791.1| cryptochrome, DASH family [Methylovorus sp. SIP3-4]
 gi|253985407|gb|ACT50264.1| cryptochrome, DASH family [Methylovorus sp. SIP3-4]
          Length = 454

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 111/458 (24%), Positives = 182/458 (39%), Gaps = 42/458 (9%)

Query: 1   MKATTAMSVH-LVWLRNDLRITDN---KALYAACHNSDAKVIAVFIATPEQ-----WRQH 51
           M A  A+    + W R DLR+ D     A           ++ VF+  P +     W   
Sbjct: 5   MSAQHAVPPGVIFWFRRDLRLHDQFALAAAIQHAQQQGGWLLPVFVHDPAESGLTRWGFA 64

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
            +S  +  ++ +++  +   L   G         + D  +  + +      V        
Sbjct: 65  RMSPHRRAWLASAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALGNPLLV-------C 117

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
            EI       ++   L   V  ++   S L+   ++      +   +T FR AL +  VQ
Sbjct: 118 DEIAAPEEQAVVAALLAAGVSVQTIWQSSLVAAENLPFDPQAVPDTFTTFRHALERAHVQ 177

Query: 172 --------ADLRSLPVPAIRLTGPVT-----PSNIPRFFDYPFQAID------PMFPIGE 212
                     L  LP  A+    P         +      +P+ A          F   E
Sbjct: 178 AARPLPSIKQLPPLPSHALLNAIPSEVASDGTDHAMACEPWPYDARSAFPLGSSGFDGSE 237

Query: 213 QNALHILRKFCKEK-VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           Q AL  L+++C+ +  + Y   R+ +  +  +S+ SP+L+ G LS RQ W  ++    + 
Sbjct: 238 QAALQHLQQYCQRRLPHSYKSTRNGLIGVDYSSKWSPWLATGALSARQAWAAIQA--FEA 295

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
                  ++    EL+WR+ +R L   +             E    + D      W +G 
Sbjct: 296 EHGANESSYWLWFELLWRDHFRWLHFKHGKRLYRA--RGLGEAHVPSHDPDHFARWCRGE 353

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           TG P IDA MR+L   G++ NR+R   AS+L+ DL  DWR G  +F SQLLD D+ SN G
Sbjct: 354 TGQPFIDAGMRELAATGYLSNRMRQNVASYLIHDLGCDWRAGAAWFESQLLDYDVYSNQG 413

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
            W + +  G D     R FNP  Q + +D  G++   W
Sbjct: 414 NWLYLSGRGTDPRQGRR-FNPDKQAQDYDADGSYRALW 450


>gi|218709609|ref|YP_002417230.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
 gi|218322628|emb|CAV18793.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
          Length = 470

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 186/457 (40%), Gaps = 39/457 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI------ATPEQWRQHGISARQSHF 60
             + L    +DLRI DN+ L+ A  + D K+I V +       + +  ++    A +  F
Sbjct: 2   KKIGLYLFTSDLRINDNQLLHCAAQSVD-KLIFVIVEPTLVRFSADLAQEQSYGAHRQTF 60

Query: 61  IYASL--LQVQKSLSQKGIVFQYHQCSNF--DDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  S+  L++  +L + G        ++   D + + L      Q VT  F N     +E
Sbjct: 61  VSQSIDNLELNLNLVRLGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFANAHCGYDE 120

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            +    L+ R    + C     S L     +     ++   +T FRK +    V      
Sbjct: 121 RQLIHSLQSRHPDLITCLPHH-STLFDSHEMPFELSKVPSSFTKFRKLVEHLDVNGGETV 179

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILR-KFCKEKVYYYV 231
           +      +T  +TP++      +    ++         GE   L  L   F  +    Y 
Sbjct: 180 IAHLPPPVTPTLTPAHTTAIPIFSSPNVERAVTNDYLGGEDAGLAHLDNYFAHDYALNYK 239

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           + R+    I+ +++ SP+L++G +SP+     LK+  ++         +    EL+WRE+
Sbjct: 240 QTRNAFDGIENSTKFSPWLALGCVSPKTICRHLKQFEIE--HGSNDSTYWIYFELLWREY 297

Query: 291 YRH-LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +    ++  PS+                  +     WK G T +PI+DA MRQLN  G+M
Sbjct: 298 FYWKCLSQGPSLFGNFSDKKLYPPNSSGTSNLNFAKWKSGNTNYPIVDACMRQLNETGYM 357

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP----- 404
            NR R + AS L+ +L +DWR G  YF SQL+D D+ASN G W + A   N  V      
Sbjct: 358 SNRGRQLAASCLIYELGIDWRHGAAYFESQLIDYDVASNWGNWAYIAGALNSQVNTQDNK 417

Query: 405 -------------YFRIFNPTIQGKRFDPQGTFIRHW 428
                          R F+   Q   +DP   FI  W
Sbjct: 418 QNDAKQPKPKTKPKSRHFDLGKQTNMYDPDHAFINKW 454


>gi|319639589|ref|ZP_07994336.1| deoxyribodopyrimidine photolyase [Neisseria mucosa C102]
 gi|317399160|gb|EFV79834.1| deoxyribodopyrimidine photolyase [Neisseria mucosa C102]
          Length = 413

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 113/451 (25%), Positives = 180/451 (39%), Gaps = 51/451 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LR+ DN AL AA   S   +  V++    Q      + RQS F Y +  ++  
Sbjct: 9   LVWFRRNLRLHDNAALNAAVA-SGLPIACVWV---NQRPSENHNPRQSLFHYQAAQELHT 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I              E L           +  +  Y   E+R+D LL   L   
Sbjct: 65  RLAAHHIPLYAVASD------EDLLPLAATLHAHTIITDEAYTEAEIRQDNLLWHNLDRA 118

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +  +D  +L    +++     Y  +T +++A +Q   +       +P        T
Sbjct: 119 GIALQHANDRGILAKAPLMDANGLPYTDFTAYKQAWLQAYSEQRPSETELPVQ------T 172

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             N+P F  +    +      GE  AL     F K+ + +Y   ++ PA + TS L+ YL
Sbjct: 173 GQNVPLFPAHTGAVLPAYQQGGETAALTQWHAF-KQNLVHYPITQNFPARKNTSLLNAYL 231

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           S G +SPR                     F WL++LI+R++   L               
Sbjct: 232 SAGCISPRLLAAESLANRH----------FEWLDKLIFRDYCYQLAYH------------ 269

Query: 310 WTEKIEWNKDSHLLQ-AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              ++    D+  ++  W+ G TG P+IDA++R L   G +H  L+ + A +    L +D
Sbjct: 270 --RRLPETTDAAPVREYWRNGRTGVPVIDASIRSLEATGHLHPVLQQLCAHYFCHALNLD 327

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
              G  +  S     D A N   W  AA          R         + DP G++IR +
Sbjct: 328 PNQGIAWTASVQTGTDPALNQANWHLAAQDTATVRYAHR-------SHQIDPDGSYIRSY 380

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
           LPEL ++P+  IH P +  D  D +  YP P
Sbjct: 381 LPELAHLPSTLIHTPWAAADDID-THGYPFP 410


>gi|223944515|gb|ACN26341.1| unknown [Zea mays]
          Length = 470

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/266 (33%), Positives = 136/266 (51%), Gaps = 14/266 (5%)

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNE 284
            Y   R       TS LSPYL  G LS R+ +++++ +      D     +     +L  
Sbjct: 2   DYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLRS 61

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           +  RE+ R+L   +P     KP +       W  +    + W+QG TG+P++DA MR+L 
Sbjct: 62  IGLREYSRYLTFNHP-CSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELW 120

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  D   
Sbjct: 121 ATGWVHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRE 180

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPL 458
             RI NP  +G +FDP G ++R WLPEL  +PT++IH P    +        +L  NYP 
Sbjct: 181 LDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPR 240

Query: 459 PIVDHKKACHH---TLNQYYAAKKQS 481
           PIV+   A       L++ +  +  S
Sbjct: 241 PIVELDAANSRLQDALSEMWELEAAS 266


>gi|300771338|ref|ZP_07081214.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762008|gb|EFK58828.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
          Length = 425

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 92/413 (22%), Positives = 169/413 (40%), Gaps = 34/413 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFIY 62
            V L+W RNDLR  DN+ L+     S   +I V+   P  + +     R     ++ FI 
Sbjct: 4   KVTLIWFRNDLRFHDNEILFETVSKSPI-IIPVYCFDPRYFSKKSSGHRKTGVHRARFIL 62

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            ++ ++++     G        S      E +     +  V ++F++R+    E    + 
Sbjct: 63  DAVRELKEKFVAMGCDL----MSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISEN 118

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +E  L + ++  K F    L     +      +   +  F+K + +       +  P P 
Sbjct: 119 VETALWKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVR--QPFPTPE 176

Query: 182 IRLTGP-VTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVE 232
           + +T P +  + IP   +  +   +             GE  AL  + +    +   + E
Sbjct: 177 VMVTHPHLEKTTIPTLEELGYTTEEIQTANNNPIHLRGGEDEALKKVEEVLSGQ---FNE 233

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           Q D         LSPY++ G LSP   ++++K+     L+  K        +L+WR+++R
Sbjct: 234 QLDYM------MLSPYIAAGALSPIYLYHKIKDA---KLVLNKKRTEKLTAQLLWRDYFR 284

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            ++  YP+V   K     +E      +   L+ W+ G TG+  ID AM+ L+  G + + 
Sbjct: 285 FMLKKYPNVFFKKNGTGKSEYSNVETNPEDLKKWQSGQTGYEFIDKAMQFLSQTGNLPSD 344

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           ++ I + F V++   DWR G  YF   L+D   A+  G W   A  G      
Sbjct: 345 IKKIVSLFFVQEYQGDWRKGASYFEDMLIDYAPATTYGYWAHYAGVGTSIKNN 397


>gi|227540558|ref|ZP_03970607.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227239640|gb|EEI89655.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 425

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 94/413 (22%), Positives = 170/413 (41%), Gaps = 34/413 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISAR-----QSHFIY 62
            V L+W RNDLR  DN+ L+     S   +I V+   P  + +     R     ++ FI 
Sbjct: 4   KVTLIWFRNDLRFHDNEILFETVSKSPI-IIPVYCFDPRYFSKKSSGHRKTGVHRARFIL 62

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            ++ ++++  +  G        S      E +     +  V ++F++R+    E    + 
Sbjct: 63  DAVRELKEKFAAMGCDL----MSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISEN 118

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +E  L + ++  K F    L     +      +   +  F+K + +       +  P P 
Sbjct: 119 VETALWKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVR--QPFPTPE 176

Query: 182 IRLTGP-VTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVE 232
           + +T P +  + IP   +  + A +             GE  AL  + +    +   + E
Sbjct: 177 VMVTHPHLEKTTIPTLEELGYTAEEIQTANNNPIHLRGGEDEALKKVEEVLSGQ---FNE 233

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
           Q D         LSPY++ G LSP   ++++K+     L+  K        +L+WR+++R
Sbjct: 234 QLDYM------MLSPYIAAGALSPIYLYHKIKDA---KLVLNKKRTEKLTAQLLWRDYFR 284

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            ++  YP+V   K      E    + +   L+ W+ G TG   ID AM+ L+  G + + 
Sbjct: 285 FMLKKYPNVFFKKNGTGKNEYSNTDTNPEDLKKWQSGQTGHVFIDKAMQFLSQTGNLPSD 344

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           L+ I + F V++   DWR G  YF   L+D   A+  G W   A  G      
Sbjct: 345 LKKIVSLFFVQEYQGDWRKGASYFEDILIDYAPATTYGYWAHYAGVGTSIKNN 397


>gi|241759630|ref|ZP_04757731.1| deoxyribodopyrimidine photolyase [Neisseria flavescens SK114]
 gi|241320002|gb|EER56383.1| deoxyribodopyrimidine photolyase [Neisseria flavescens SK114]
          Length = 411

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 109/451 (24%), Positives = 176/451 (39%), Gaps = 51/451 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LR+ DN AL AA   S   +  V++    Q      + RQS F Y +  ++  
Sbjct: 7   LVWFRRNLRLHDNAALNAAVA-SGLPIACVWV---SQRPSENHNPRQSLFHYQAAQELHT 62

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L+   I              E L           +  +  Y   E+R+D  L     + 
Sbjct: 63  RLATHHIPLYVVASD------EDLLPLAAAFNAHTVITDEAYTEAEIRQDNHLWHNFDRA 116

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +  +D  +L    +++     Y  +  +++A +Q           +P        T
Sbjct: 117 GITLQHANDRGILAKFPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETELPVQ------T 170

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             N+P F  +    +      GE  AL     F K+ + +Y   ++ PA + TS L+ YL
Sbjct: 171 RQNVPLFPAHTGAVLPAYQQGGETAALTQWHAF-KQNLVHYPITQNFPARKNTSLLNAYL 229

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           S G +SPR                     F WL++LI+R++   L               
Sbjct: 230 SAGCISPRLLAAEGLANRH----------FEWLDKLIFRDYCYQLAYH------------ 267

Query: 310 WTEKIEWNKDSHLLQ-AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              ++    D+  ++  W+ G TG PIIDA++R L   G +H  L+ + A +    L  D
Sbjct: 268 --RRLPETTDAAPVREYWRLGQTGVPIIDASIRGLEATGHLHPVLQQLCAHYFCHALNFD 325

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
              G  +  S     D A N   W  AA          R         + DP G++IR +
Sbjct: 326 PNQGIAWAASVQTGTDPALNQANWHLAAQDTATVRYAHR-------SHQIDPDGSYIRSY 378

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
           +PEL ++P+  IH P +  D  D +  YP P
Sbjct: 379 VPELAHLPSTLIHTPWAAADDID-THGYPFP 408


>gi|170047814|ref|XP_001851403.1| DNA photolyase [Culex quinquefasciatus]
 gi|205694137|sp|B0WRR9|CRY1_CULQU RecName: Full=Cryptochrome-1
 gi|167870095|gb|EDS33478.1| DNA photolyase [Culex quinquefasciatus]
          Length = 499

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/311 (27%), Positives = 142/311 (45%), Gaps = 19/311 (6%)

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-----KVYYYVEQRDIPAIQGT-S 243
           P +   +++         +  GE  AL +L +  K+     +  YY+  +  P      S
Sbjct: 158 PEDFGIYYEGNADIARQRWTGGEAKALELLGRRLKQEEEAFREGYYLPTQARPDFLAPPS 217

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK---SGAFSWLNELIWREFYRHLMAFYPS 300
            +S  L  G LS R  +  + + F  +    +    G      +LIWRE++  +    P 
Sbjct: 218 SMSAALRFGCLSVRMFYWCVHDLFARVQANNQLKHPGGHHITGQLIWREYFYTMSVHNPH 277

Query: 301 VCMGKPFIPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
             + +   P    I W       L  WK+G TGFP+IDAAMRQL   GW+H+ LR ITA+
Sbjct: 278 YAVME-LNPICLNIPWYEAKDDSLDRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNITAT 336

Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-VPYFRIFNPTIQGKR 417
           FL +  L + W  G ++F+  LLD D +   G W W +S+  +  +      +P    +R
Sbjct: 337 FLTRGGLWISWEAGVQHFLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPVALARR 396

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTL 471
            DP+G +++ +LPEL   P  Y+H P     +        +  +YP P+V+  +      
Sbjct: 397 LDPKGEYVKRYLPELEKFPALYVHEPWKAPPELQEQYGCVIGKDYPAPMVNLAEVNKCNA 456

Query: 472 NQYYAAKKQSL 482
           N+  A +++ L
Sbjct: 457 NKMNAIRQKLL 467


>gi|260220872|emb|CBA28873.1| hypothetical protein Csp_A09310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 468

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 102/462 (22%), Positives = 168/462 (36%), Gaps = 45/462 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVI----AVFIATPEQWRQHGISAR 56
           M      +  + W R+D+R+ DN A   AC      +      V  A    W   G+S  
Sbjct: 14  MSLVDVGAPVIYWFRSDMRLQDNPAWTRACAMGRPVLAVTFAPVLSAREAAWGIPGLSPS 73

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  +  A++ ++++ L   G+     +  +     E L           L         E
Sbjct: 74  RKAWWAATVQELRRELDALGVSLLVLRGGSM----EALVRLFEASGAVALVCEEIAAPYE 129

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
                 L       ++  S     L     +      +  V+T FR  + +  V      
Sbjct: 130 R---AQLSSLRASGIVVHSVWQGTLFKAEDLPFSVTDLPGVFTRFRNEVERAKVPFR-TP 185

Query: 177 LPVPAIRLTGPVTPSNIPRFFDY----------PFQAIDPMFPIGEQNA----------- 215
           LP P       +    +    D+                  +  G   A           
Sbjct: 186 LPAPVNVTGYDLACDAVSFAEDFVDGAAAGKFVADPRSAFQWRSGSSGANDEVLHLDEVL 245

Query: 216 ------LHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
                    L+ + +  +V  Y   R+ +  +  +S+ SP+L++G +S  +    LK   
Sbjct: 246 AGSGGGHAYLQHYLESGRVAQYKATRNGLTGMAYSSKWSPWLALGAVSAPELMAALKAHE 305

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG-KPFIPWTEKIEWNKDSHLLQAW 326
            +       G++    EL+WR+++R L   Y +     K  +   +             W
Sbjct: 306 REHGT--TDGSYWLWFELLWRDYFRWLHLQYGAGLYRPKGLLEAAKSERVPHHRRSFTLW 363

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
            QG TG  ++DA MR+L   G++ NR+R + ASFL+ +L  DWR G  +F SQLLD D+ 
Sbjct: 364 TQGRTGCDLVDAGMRELACSGYLSNRMRQVVASFLIYELGCDWRAGAAWFESQLLDFDVY 423

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           SN G W + A  G D     R FN   Q    DP G +   W
Sbjct: 424 SNQGNWLYIAGLGTDPRGGRR-FNVAKQTADHDPDGAYRALW 464


>gi|223997602|ref|XP_002288474.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975582|gb|EED93910.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 408

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 93/405 (22%), Positives = 156/405 (38%), Gaps = 36/405 (8%)

Query: 94  LDSYCLQQRVTKLFYNRQYEI-NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL 152
           L +   Q+ + ++  + +        RDK + +  +   I     D        +     
Sbjct: 4   LRTIHKQRPINQILCHLETGHLKSFARDKAVRRWCRSSNIPIRELDQT-----GVTRCLK 58

Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE 212
                   F+K + Q +     +       +   P+ P++I +  +            GE
Sbjct: 59  DRDDFSVNFKKFINQPMWSTPSQH------QCRSPMKPTDIQQIPEEHKGDRVERQYGGE 112

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTS--QLSPYLSIGVLSPRQCWNRLKEEFVDL 270
             A  +L  F   +   Y      P    TS  +LSPYL+ G +S R      + +  +L
Sbjct: 113 TKAFGMLHSFLTHRGANYSAGISSPNTSWTSCSRLSPYLTWGHISLRYVIVTTQRKQEEL 172

Query: 271 LIKPKS-------------GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP--WTEKIE 315
               K                 S+ + + WR  +   +   PS+ +    +      +  
Sbjct: 173 REHRKRNKSRGEAPSLWLRSLASFQSRMHWRSHFIQKLESQPSLEVQDQCLAFSHLRRQP 232

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
            + +    ++W +G TG+P +DA MR L   GW++ R R +  SF   +L +DW+    Y
Sbjct: 233 GDFNESYYESWCEGKTGYPYVDACMRCLRHCGWINFRARAMLVSFATYNLWLDWKRIASY 292

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
                LD +   +    Q    +G   +   R++N T QGK  DP G FIR  +PEL NV
Sbjct: 293 LARLFLDYEPGIHYPQLQMQ--SGVTGINAMRVYNVTKQGKDQDPNGVFIRKHVPELRNV 350

Query: 436 PTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           P +YIH P          + YP PIVD K A     ++    +KQ
Sbjct: 351 PVEYIHEPFGMP-----CVYYPAPIVDEKAAAKAAKDKLSGVRKQ 390


>gi|313217172|emb|CBY38333.1| unnamed protein product [Oikopleura dioica]
          Length = 571

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 107/484 (22%), Positives = 178/484 (36%), Gaps = 39/484 (8%)

Query: 4   TTAMSVHLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           ++   V L W     LR+ DN  L AA  N  A V   +        +   S+ +  FI 
Sbjct: 68  SSPEHVTLFWFTEAALRLNDNAGLKAAMKNCKA-VRFCYFLDERFINE---SSPRWKFIK 123

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRRDK 121
           ++L  + + L   G               E L        V +L ++      +  RRD+
Sbjct: 124 SALSDLDEQLKNLGSRLHVLSGQPS----ERLPQLFADWNVVRLGFSAHPGCTDMRRRDR 179

Query: 122 LLEK-RLQHRVICKSFDD-SVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLP 178
            +    L+H V     D    L  P  I+  +  M  +  P F     Q        ++P
Sbjct: 180 AIVSLALRHGVEVVYRDAPQCLYSPRDIIKASGGMPPLTFPSFVGVASQLPEPEKPINVP 239

Query: 179 VPAIRLTG-PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
              I +          P+      + +D  +  GE  A        +  +      R+  
Sbjct: 240 ESDIVMCSVSEDHDEAPQNEILGKKDLDFPWAGGETEARARFMSALRHWL----INRETQ 295

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
           +      ++PY+  G LS RQ ++ +   + +  I+ +          + R+F  +L   
Sbjct: 296 STPDLRAVTPYIVQGCLSVRQVYHDVNRVYEE--IQGEKATLKLHFAALHRDFLYNLAVV 353

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                   P       + ++ D   ++ W +G TGFP +DA MRQ  T GW+   LR   
Sbjct: 354 --------PNDDLNLDVSFDCDEARIRTWLEGNTGFPWVDAVMRQFRTEGWVAPTLRQAV 405

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
             FL + +L         FMS+    DL    G   WA+ TG           P     +
Sbjct: 406 LWFLTRGVLWQTPEIAVQFMSEFCLLDLPLAKGYAAWASGTGAWCENDVAHKCP-----K 460

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
            DP   +IR W+PE+ N+  + IH P +     +    Y   IV HK +   + ++Y+  
Sbjct: 461 VDPN--YIRQWVPEVANLTDEQIHEPWTTQTPTE----YVSLIVQHKISHRRSESKYHET 514

Query: 478 KKQS 481
            K+S
Sbjct: 515 LKRS 518


>gi|218662587|ref|ZP_03518517.1| Deoxyribodipyrimidine photo-lyase [Rhizobium etli IE4771]
          Length = 208

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 93/204 (45%), Positives = 125/204 (61%), Gaps = 7/204 (3%)

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           E+ WREF  HL+  +P +     +    +  EW  D    +AW++G TG+PI+DA MRQL
Sbjct: 3   EIAWREFSYHLLYHFPRLASAN-WNERFDGFEWRNDDDEFRAWRRGMTGYPIVDAGMRQL 61

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              GWMHNR+RMI ASFLVKDLL+DWR GE +F   L+D D A+N   WQW A +G D+ 
Sbjct: 62  RRHGWMHNRVRMIAASFLVKDLLIDWRCGEAWFRDTLVDADPANNAASWQWVAGSGADAS 121

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH----APHSWLDKNDL--SLNYP 457
           P+FRIFNP +QG+ FDP+G ++  ++PEL  +  +YIH    AP   LD   +     YP
Sbjct: 122 PFFRIFNPVLQGETFDPEGDYVGAYVPELRRLGPKYIHRPFEAPKRVLDAAGIILGHTYP 181

Query: 458 LPIVDHKKACHHTLNQYYAAKKQS 481
            P+VDH  A +  L  Y A +  S
Sbjct: 182 APMVDHGSARNRALAAYDAIRAAS 205


>gi|77964006|gb|ABB13344.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
          Length = 462

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/254 (35%), Positives = 135/254 (53%), Gaps = 14/254 (5%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYRHLMA 296
            TS LSPYL  G LS R+ ++ ++ + +    +    A      +L  +  RE+ R+L  
Sbjct: 1   NTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCF 60

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +P     KP +       W  D    + W+QG TG+P++DA MR+L   GW+H+R+R++
Sbjct: 61  NHP-CSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 119

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            +SF VK L + WR G +YF   LLD DL S+  GWQ+ + +  DS     I NP ++G 
Sbjct: 120 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGY 179

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC--- 467
           +FDP G ++R WLPEL  +PT++IH P             +L  NYPLPIV+   A    
Sbjct: 180 KFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRL 239

Query: 468 HHTLNQYYAAKKQS 481
              L++ +  +  S
Sbjct: 240 QEALSEMWQLEAAS 253


>gi|237654599|ref|YP_002890913.1| cryptochrome, DASH family [Thauera sp. MZ1T]
 gi|237625846|gb|ACR02536.1| cryptochrome, DASH family [Thauera sp. MZ1T]
          Length = 515

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 119/482 (24%), Positives = 187/482 (38%), Gaps = 74/482 (15%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE-----QWRQHGISARQSHFIYA 63
           V + W RNDLR+ DN AL  AC ++  +++ V+   P      +W        +  F+ A
Sbjct: 5   VVIFWFRNDLRVGDNLALVEACASA-GRLLPVYCHDPSADAPTRWGFVRRGPHRRAFLEA 63

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L  +  +L  +G        +         ++      V +        I     +  L
Sbjct: 64  ALGDLDAALRARGSALLQLNGAPRAVLPALAEAVGAAVVVCE-------AIAAPEEEDEL 116

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ-----------A 172
                  +  K+   S LL P ++   A ++ KV+T FR+A+    +Q            
Sbjct: 117 AALRAAGLKVKAIWQSTLLDPAALPFAAARLPKVFTAFRQAVESAGLQPPAPLPAPRTLP 176

Query: 173 DLRSLPVPAIRLTGP--------------------------VTPSNIPRFFDYP------ 200
               L  P  R                                P N      Y       
Sbjct: 177 PWPPLDRPTRRSDASRDLRAGRSPGVAGRDPCAGRSPGVERAEPGNRDLRRSYGGSCGAA 236

Query: 201 ------------FQAIDPMFPIGEQNALHIL-RKFCKEKVYYYVEQRDIP-AIQGTSQLS 246
                       F    P F  GE+ AL  L R F  ++  +Y   R+    +  +S+ S
Sbjct: 237 DALTVEIGEQASFPWWQPAFAGGERAALAHLARYFAGDRPRHYKATRNGLSGVDFSSKFS 296

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L+ G LS R     L+   ++    P  G++    EL+WR+++R L+       + + 
Sbjct: 297 PWLAQGALSARVALAALRRHEIEQG--PSDGSYWLWFELLWRDYFR-LLHLQQGRRLYRA 353

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
                   +   D+    AW+ G TG P IDA MR+L   GW+ NR+R I AS+L+ DL 
Sbjct: 354 RGLNEGAAQPAHDAAAFAAWRVGGTGHPFIDAGMRELAATGWLSNRMRQIVASYLIHDLG 413

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
            DWR G  +F +QL+D D+ SN G W + A  G D     R F+P  Q   +D  G +  
Sbjct: 414 CDWRAGAAWFEAQLVDYDVYSNQGNWLYIAGRGTDPRGGRR-FDPDRQAAMYDADGAYRA 472

Query: 427 HW 428
            W
Sbjct: 473 LW 474


>gi|195148599|ref|XP_002015258.1| GL19603 [Drosophila persimilis]
 gi|194107211|gb|EDW29254.1| GL19603 [Drosophila persimilis]
          Length = 303

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/247 (34%), Positives = 121/247 (48%), Gaps = 10/247 (4%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             T+ LSPYL  G LS R  +++  +  +    K      S + +L+WREFY  + A  P
Sbjct: 26  PSTTVLSPYLKFGCLSAR-IFHQQLKAILKRQSKHSQPPVSLIGQLLWREFYYTVAAAEP 84

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +         +  +I W + +  L+AW  G TG+P IDA MRQL   GW+H+  R   A 
Sbjct: 85  NFDRMLG-NVYCLQIPWQEQADHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVAC 143

Query: 360 FLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           FL + DL + W  G+  F   LLD D A N G W W  S       YFR+++P   GK+ 
Sbjct: 144 FLTRGDLWISWEAGQRVFEQLLLDQDWALNAGNWMW-LSASAFFHQYFRVYSPVAFGKKT 202

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLN 472
           DPQG +IR ++PEL   P   I+ P      +       L ++YP  IV H+      + 
Sbjct: 203 DPQGHYIRKYVPELAKYPNGCIYEPWKATLADQREYGCVLGVDYPHRIVKHELVHKENIK 262

Query: 473 QYYAAKK 479
           +  AA K
Sbjct: 263 RMSAAYK 269


>gi|225076344|ref|ZP_03719543.1| hypothetical protein NEIFLAOT_01388 [Neisseria flavescens
           NRL30031/H210]
 gi|224952329|gb|EEG33538.1| hypothetical protein NEIFLAOT_01388 [Neisseria flavescens
           NRL30031/H210]
          Length = 428

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 109/451 (24%), Positives = 176/451 (39%), Gaps = 51/451 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LR+ DN AL AA   S   +  V++    Q      ++RQS F Y +  ++  
Sbjct: 24  LVWFRRNLRLHDNAALNAAVA-SGLPIACVWV---SQRPSENHNSRQSLFHYQAAQELHT 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QH 129
            L+   I              E L           +  +  Y   E+R+D  L     + 
Sbjct: 80  RLAAHHIPLYVVASD------EDLLPLAAALNAHTVITDEAYTEAEIRQDNHLWHNFDRA 133

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            +  +  +D  +L    +++     Y  +  +++A +Q           +P        T
Sbjct: 134 GITLQHANDRGILAKSPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETELPVQ------T 187

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             N+P F  +    +      GE  AL     F K+ + +Y   +  PA + TS L+ YL
Sbjct: 188 GQNVPLFPAHTGAVLPAYQQGGETAALTQWHAF-KQNLVHYPITQTFPARKNTSLLNAYL 246

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           S G +SPR                     F WL +LI+R++   L               
Sbjct: 247 SAGCISPRLLAAEGLANRH----------FEWLEKLIFRDYCYQLAYH------------ 284

Query: 310 WTEKIEWNKDSHLLQ-AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              ++    D+  ++  W+ G TG PIIDA++R L   G +H  L+ + A +    L  D
Sbjct: 285 --RRLPETTDAAPVREYWRHGQTGVPIIDASIRGLEATGHLHPILQQLCAHYFCHALNFD 342

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
              G  +  S     D A N   W +AA          R         + DP G++IR +
Sbjct: 343 PNQGIAWTASVQTGTDPALNQANWHFAAQDTATVRYAHR-------SHQIDPDGSYIRSY 395

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
           +PEL ++P+  IH P +  D  D +  YP P
Sbjct: 396 VPELAHLPSTLIHTPWAAADDID-THGYPFP 425


>gi|110667407|ref|YP_657218.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
 gi|109625154|emb|CAJ51573.1| deoxyribodipyrimidine photolyase [Haloquadratum walsbyi DSM 16790]
          Length = 719

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 98/402 (24%), Positives = 159/402 (39%), Gaps = 30/402 (7%)

Query: 87  FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146
           + D ++ L S+ + +  + L           RRD   +      +   S D       G 
Sbjct: 189 YGDPVDIL-SHFVDRGWSILTMETPTSRYGKRRDTRAQSVCGDALRFISGD-------GL 240

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
           I +         +   + L     +           +LT P   +       +       
Sbjct: 241 IRDAEWSRANWKSHITEWLAA---EQHTPEWSGDTTQLTIPTGITPSVVEKTHKINPTKK 297

Query: 207 MFPIG-EQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRL 263
           M P G  + A   LR F  +++  Y      P  A  GTS LSPY + G+LS RQ     
Sbjct: 298 MVPTGTHRAATTQLRAFV-DQIGSYPSNISAPQDARTGTSGLSPYFNFGLLSIRQV---- 352

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW-NKDSHL 322
             ++V+       G   + + LIW   Y   +A + +    +   P  E+      +  L
Sbjct: 353 -HQYVNNNTPECRGRRMFTSRLIWNCHYNQKLADW-AGWTDRAVNPAFEEFNADRHNPAL 410

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           + AWK G TGFP++DA+MR L   GW++ R+R +  S     L   W IG ++F   L+D
Sbjct: 411 VDAWKHGQTGFPMVDASMRCLRETGWLNFRMRAMCVSIFTHILQQPWWIGADWFHHHLID 470

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D+  N    QW +  G    P  R++NP  Q +  D  G +I  W+PEL+++P Q+   
Sbjct: 471 SDVGINYT--QWQSQAGLIGKPSQRVYNPRKQVRDHDSDGEWITKWVPELSDLPAQHFPR 528

Query: 443 PHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           P              +  +YP P+VD         ++Y   +
Sbjct: 529 PERTPLAVQSECNVIIGDDYPRPVVDFDARRETFWSRYERRR 570



 Score = 43.5 bits (101), Expect = 0.084,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS-ARQSHFIYASLLQVQ 69
           +VW R  LR  D++A  A        +  +F+  P  +   G++   +  F++ ++  + 
Sbjct: 46  VVWHRKHLRTADHRA-LADAVADADIICPLFVFDPTFYDNDGLACDARIRFLHEAVDSLN 104

Query: 70  K 70
           +
Sbjct: 105 Q 105


>gi|254468682|ref|ZP_05082088.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
           proteobacterium KB13]
 gi|207087492|gb|EDZ64775.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
           proteobacterium KB13]
          Length = 416

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 98/429 (22%), Positives = 180/429 (41%), Gaps = 24/429 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           MS ++ W RN+LRI DN  L     +S   +  V+I         G    ++ F+  +L 
Sbjct: 1   MSHNIFWFRNNLRIHDNYPLVQCIKDS-TSISFVYIVNRHLRVLDGHENHKNKFLIDALN 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           Q++ +LS  G      +    D       S   Q ++ K++  +     E   +  + + 
Sbjct: 60  QLKINLSDLGHELYIIEGEPSD----IFSSLAKQYQINKIYCEKIVSPYETDEELSITQT 115

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                   SF DS LL    +    + +   +T FRK +   L            +    
Sbjct: 116 -----DVLSFWDSTLLNIDDLDFDVIDLPDTFTTFRKKVE--LKPITATLYEGLTLPKPA 168

Query: 187 PVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVY-YYVEQRD-IPAI 239
            ++  N  +  ++  +          + I E  A   ++ +  +K    Y + R+ +   
Sbjct: 169 NLSNINSYQLPNFDIKYRGSVDFLNHYTICENGAQKYVKDYFSDKKALEYKQTRNELMGN 228

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             +++ S +L+ G++S RQ +  LK    +         +  L EL+WR+++R L   Y 
Sbjct: 229 DFSTKFSVWLAHGLISARQIFTSLK--NYEESNGANESTYWILFELLWRDYFRLLHFKYN 286

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                +  +   E  E ++D+  +   ++  T    I+A +R+L   G++ NR+R I AS
Sbjct: 287 RKLYFQFGLKNKEINETSQDN--ISNLEEANTESSFINAGIRELQNSGFLSNRMRQILAS 344

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           F++ ++ +DWRIG ++F   L+D D+ SN G W + A  G D     R FN   Q   +D
Sbjct: 345 FIIFEMKIDWRIGADFFQKYLIDFDIYSNQGNWIYIAGYGTDPRGGRR-FNVEKQKNTYD 403

Query: 420 PQGTFIRHW 428
               +   W
Sbjct: 404 IDNQYEMCW 412


>gi|284799906|ref|ZP_05985171.2| deoxyribodopyrimidine photolyase [Neisseria subflava NJ9703]
 gi|284796575|gb|EFC51922.1| deoxyribodopyrimidine photolyase [Neisseria subflava NJ9703]
          Length = 428

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/451 (24%), Positives = 174/451 (38%), Gaps = 51/451 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW R +LR+ DN AL AA   S   +  V++    Q      + RQS F Y +  ++  
Sbjct: 24  LVWFRRNLRLHDNAALNAAVA-SGLPITCVWV---SQRPSENHNPRQSLFHYQAAQELHT 79

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+   I              E L           +  +  Y   E+R+D  L       
Sbjct: 80  RLAAHHIPLYVVASD------EDLLPLAAALNAHTVITDEAYTEAEIRQDNHLWHNFDQA 133

Query: 131 VIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
            I  +  +D  +L    +++     Y  +  +++A +Q           +P         
Sbjct: 134 GIALQHANDRGILAKSPLMDANGLPYTDFAAYKQAWLQAYSGQRPSETKLPVQ------I 187

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL 249
             N+P F  +    +      GE  AL     F K+ + +Y   ++ PA + TS L+ YL
Sbjct: 188 GQNVPLFPAHTGAVLPAYQQSGETAALTQWHAF-KQNLVHYPITQNFPARKNTSLLNAYL 246

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
           S G +SPR                     F WL++LI+R++   L               
Sbjct: 247 SAGCISPRLLAAESLANRH----------FEWLDKLIFRDYCYQLAYH------------ 284

Query: 310 WTEKIEWNKDSHLLQ-AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
              ++    D+  ++  W+ G TG PIIDA++R L   G +H  L+ + A +    L  D
Sbjct: 285 --RRLPETTDAAPVREYWRHGQTGVPIIDASIRGLEATGHLHPVLQQLCAHYFCHALNFD 342

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
              G  +  S     D A N   W  AA          R         + DP G++IR +
Sbjct: 343 PNQGIAWTASVQTGTDPALNQANWHLAAQDTATVRYAHR-------SHQIDPDGSYIRSY 395

Query: 429 LPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
           LPEL ++P+  IH P +  D  D +  YP P
Sbjct: 396 LPELAHLPSTLIHTPWAAADDID-THGYPFP 425


>gi|91224260|ref|ZP_01259523.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
 gi|91191171|gb|EAS77437.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
          Length = 422

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 103/402 (25%), Positives = 169/402 (42%), Gaps = 24/402 (5%)

Query: 36  KVIAVFI---ATP---EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89
           ++I ++     TP      ++      +  F+ +SL ++ +SL+  G      + +    
Sbjct: 3   ELICLYCYPSMTPYLHHFAQEASFGRAKLQFLDSSLSELNQSLNHLGQRLWAVELTPDQA 62

Query: 90  SIEWLDSYCLQQRVTKLFYNRQYEINEVRR-DKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
               ++ +     VT ++ +     +E +  D+ +E      V  K      LL    + 
Sbjct: 63  IKYAVNRF----GVTHIYADAFPGSDEQQALDRAVEGA--SHVKIKQQAIRTLLREEQLP 116

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
                +   +T FRK +    +     S+        G   PS    +FD         F
Sbjct: 117 FDLSNLPTTFTQFRKQVEGLDISRPHESIRSLPPIPLGVNLPSVTAYYFD-----AKAAF 171

Query: 209 PIGEQNAL-HILRKFCKEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
             GE   L H  + F       Y + R+ +  +  +++ SP+L+ G +SP+  +  LK  
Sbjct: 172 HGGESRGLEHCRQYFASTLASEYKQTRNGLDGMDYSTKFSPWLAHGCVSPKTIYAMLKRY 231

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
             +         +    EL+WRE++      +         I     +  +  +H  Q W
Sbjct: 232 --EAENGANDSTYWIYFELLWREYFYWYARRHKRQLFRFGGIQNRAPLT-SFYAHRFQQW 288

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           K+G T FPI++A M QLN  G+M NR R + AS LV +L +DWR G  YF SQL+D D+A
Sbjct: 289 KKGETPFPIVNACMHQLNETGYMSNRGRQLVASCLVHELGLDWRYGAAYFESQLVDYDVA 348

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           SN G WQ+ A  G D     R FN   Q + +DP   FI  W
Sbjct: 349 SNWGNWQYLAGVGADPRG-SRQFNLEKQTEMYDPHMEFIDRW 389


>gi|196476809|gb|ACG76268.1| deoxyribodipyrimidine photolyase [Amblyomma americanum]
          Length = 147

 Score =  213 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 101/145 (69%), Positives = 119/145 (82%)

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           I+DAAMRQLN+ GWMHNRLRMITASFLVKDLL+DWR GE YFMSQL+DGDLA+NNGGWQW
Sbjct: 1   IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQW 60

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
           AASTG D+ PYFRIFNPT QG++FD +G FIR WLPEL +VP + +H P  W  K  ++L
Sbjct: 61  AASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTL 120

Query: 455 NYPLPIVDHKKACHHTLNQYYAAKK 479
           +YP PIV+HK+A   TL  Y AA+K
Sbjct: 121 DYPQPIVEHKEARVQTLAAYEAARK 145


>gi|313234987|emb|CBY24933.1| unnamed protein product [Oikopleura dioica]
          Length = 374

 Score =  212 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 158/374 (42%), Gaps = 22/374 (5%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQHGISARQSHFIYASLLQV 68
            + W R  LR+ DN+ALY A   S   V  ++I     Q  +   SA ++ F+   L  +
Sbjct: 7   TVHWFRKGLRLHDNEALYHAVTTSQV-VFPIYILDVDWQTEKEKFSALKTRFLIECLRDL 65

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
            + L + G            D+   +  +C +  +T++ + +  EI    RD+ + K + 
Sbjct: 66  DEGLKKCGTRLYVLTG----DATTVIKKFCKENEITQMTWMKDAEIFYRERDEEITKVVH 121

Query: 129 H-RVICKSFDDSVLLPPGSIL-NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              +  KSF    L     ++  +  ++    + F  A+               A  +  
Sbjct: 122 RMEIKTKSFLGHTLYDQDEVIAKNGGKIPMDLSEFYAAIADMEQPGAPCPTSCIAPAVDN 181

Query: 187 PVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRD---IPAIQG 241
             +   IP+   +  QA    P++  GE+ AL  L+    +   + +   +      +  
Sbjct: 182 HESTYGIPKISVWGHQAPRSLPIYRGGERQALKALQAKINDPTLFTLNGFNQGVKTKLPH 241

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           T+ LS Y + G +S R  W   ++        P+S       ++++REF+  + A   + 
Sbjct: 242 TTYLSAYQNYGCISTRHFWKAAEKL-------PESKTIMLRGQIMYREFFY-VAASQVNN 293

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                      +IEW K+   L AW++G TG+P IDA MRQL T G++H+  R   ASFL
Sbjct: 294 FTKMAGNRICRQIEWYKNEEHLSAWQEGRTGYPYIDAVMRQLVTEGFIHHLNRWAVASFL 353

Query: 362 VKD-LLVDWRIGEE 374
               L ++W  G+E
Sbjct: 354 TNGQLWLNWEHGQE 367


>gi|156055622|ref|XP_001593735.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980]
 gi|154702947|gb|EDO02686.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 651

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 108/518 (20%), Positives = 197/518 (38%), Gaps = 90/518 (17%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGI----------- 53
            + +  +R DLR+ DN  L++  HN D     ++ +++   +Q    G            
Sbjct: 5   KILIYLMRRDLRVADNPILHSLIHNKDHGFTHLLPLYVFAAQQIEVSGFIPEDGGKSPYP 64

Query: 54  ------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ- 100
                          ++ F+  S+  ++    + G           D+ ++ L     + 
Sbjct: 65  EARSQLGAFWRCGPHRAKFLAQSVWDLKDGFEKIGSGLSIR-VGMVDEIVKGLIERFEEG 123

Query: 101 --QRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLL---------PPGSIL 148
              +V+ ++   +  + E R ++  +K   +  V  K + D              P  + 
Sbjct: 124 AGSKVSAVWMTSEEGVEEKREERSTKKICDKAGVDFKLWQDEKYFVDDRDLPFEDPKDLS 183

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP-RFFDYPFQAIDPM 207
           +      K   P R A   +L + ++ SLP     +    +P  IP ++ +     + P+
Sbjct: 184 DIYTTYRKSVEPLRNAPRPDLPKPEMNSLPPFPTDVPPQHSPFVIPTKYEEIEAALLKPI 243

Query: 208 ---------------------FPIGEQNALHILRKFC-KEKVYYYVEQRD-IPAIQGTSQ 244
                                F  GE +A   L        +  Y   R+ +     +++
Sbjct: 244 NSQPLVKNPPKCPENTLSVHPFTGGESHAQERLEHLITSGSITGYKSSRNGLMGTDFSTK 303

Query: 245 LSPYLSIGVLSPRQCWNRLK---------EEFVDL---LIKPKSGAFSWLNELIWREFYR 292
           LS YL++G ++ RQ    +          + + DL         G ++   EL+WR++ R
Sbjct: 304 LSAYLALGSITSRQIHASMSVFENGSTSDDRYKDLEGYGNGENEGTYAVRFELLWRDYMR 363

Query: 293 HLMAFYPS--------VCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
                +             G     W       +     +   +++ +  G TG   IDA
Sbjct: 364 LCTRKFGPQLFRLGGFKAEGNAHSKWSRLDSPKDGFSKEQIQEIVERFLNGTTGMGFIDA 423

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           + R++   G+  NR R   ASFL K L +DWRIG E++   L+D D++SN G WQ+ A  
Sbjct: 424 SQREIYHTGYTSNRARQNVASFLSKHLYIDWRIGAEWYECMLVDYDVSSNWGNWQYVAGV 483

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436
           GND     RIFNP  Q   +DP+  ++  W+ EL  V 
Sbjct: 484 GNDPRGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGVD 521


>gi|330814060|ref|YP_004358299.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487155|gb|AEA81560.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 184

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/179 (45%), Positives = 112/179 (62%), Gaps = 6/179 (3%)

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                 +K  W +D   L+ WKQG TG+PI+DA MR+L+  GWMHNR+RMITASFLVK L
Sbjct: 5   NLRKQFDKFNWVRDDAKLKKWKQGKTGYPIVDAGMRELSETGWMHNRVRMITASFLVKHL 64

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            ++W  GE++F   LLD ++ +N  GWQW A  G D+ PYFRIFNP +QG++FD +G ++
Sbjct: 65  RINWVEGEKHFRDCLLDFNVPNNVAGWQWVAGCGADAAPYFRIFNPILQGEKFDSEGMYV 124

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           + W+ ELN +P +YIH P    +         L  NY  PIV+H +A +  L  +   K
Sbjct: 125 KKWVKELNPIPKKYIHKPWEMPEDEQSKVNFNLKKNYYAPIVNHAEARNSALEAFKNLK 183


>gi|293321545|emb|CAZ66368.1| cryptochrome [Crateromorpha meyeri]
          Length = 520

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 106/499 (21%), Positives = 185/499 (37%), Gaps = 41/499 (8%)

Query: 10  HLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            L    +D LRI DN +L +   N+       +       + + I   +  F+  SL  +
Sbjct: 5   TLHIFTDDALRINDNNSLLSNLENTKNLYTVFYY--GHIKKINHIPPHRVIFLLESLKNL 62

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L + GI   +     F    + L     +  + ++       I   R    L   L 
Sbjct: 63  KERLDEYGIPLYFIDEPMF----QSLRMLISKWNINRVTTEPVVSIVGKRDQLSLRNFLS 118

Query: 129 H-RVICKSFDDSVLLP----PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
              V+ ++++ S L      P +I                +L + L +   +    P   
Sbjct: 119 AFGVMLRTYNSSTLYDTVKVPVNITRSEFFRIITQMEPELSLPEELTEFLSKFSSFPDPF 178

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
           +   +   +     +    +ID  F  GE  A+  L K    +     E  ++P +   +
Sbjct: 179 INKKIPSLSEFGITNETMSSIDTKFRGGETAAILQLEKLIANRC----EPNNLPKVAQLN 234

Query: 244 Q---LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           Q   +SP +  G +S R  +NR+      L  K         + L  R++   +    P+
Sbjct: 235 QYDAISPAIKFGCISVRTIYNRV----SKLEPKYNEVKNQIYDGLRNRDYCILVGGNCPN 290

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +        +   + W+        ++ G TG+P IDAA+ QL   G++HN ++ I    
Sbjct: 291 IDNQGSIYTYI--LPWDVKQDASTRFQTGRTGYPFIDAAIAQLKREGFIHNSVKNILVRT 348

Query: 361 LVKDL-LVDWRIGEEYFMSQLLDGDLASNNGGWQWAA-STGNDSVPYFRIFNPTIQGKRF 418
           L  DL  + W  G   F    LD + A     W   + ST           NP  + K  
Sbjct: 349 LTCDLMWIGWHEGVRMFYKWSLDYNAAICALSWMHGSKSTWLLEEISISQINPIEEAKEI 408

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPH------SWLDKNDLSLNYPLP----IVDHKKACH 468
           D  G +IR +LPEL + P++YIH P           +  +  +YP P    + +  + C 
Sbjct: 409 DKDGDYIRKYLPELKDYPSEYIHTPWLAPLDQQIESECVIGQDYPYPNYCDVEERVQQCR 468

Query: 469 HTLNQYYA----AKKQSLL 483
             L  +Y     AKK+  L
Sbjct: 469 KRLQIFYNIMPIAKKRRTL 487


>gi|146279110|ref|YP_001169269.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557351|gb|ABP71964.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 455

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 101/468 (21%), Positives = 165/468 (35%), Gaps = 56/468 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LVW RNDLR+TD+ AL  A    D   + + I  P +W     S RQ  F    L     
Sbjct: 4   LVWFRNDLRVTDHPALARA----DGHALPLVIVDPAEWADPARSGRQWAFRAECLQD--- 56

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L +              D +  L++ C   R+ ++        + +  D+ ++      
Sbjct: 57  -LREALAALGAPLALRVGDPLTVLETLCRLHRIGRILCIEDLACHAL--DRRVQAWAAAA 113

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
            +  +      L PG      L       P                         GP+ P
Sbjct: 114 GVEFTA-----LAPGPGAPATLTPLPGVEP-------------------------GPIPP 143

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPY 248
           + + R  +          P G      +L+ F + +  +Y + RD P  A +  S+LSP+
Sbjct: 144 ARVLRIAE---DRCPHRQPGGRMQGRLLLQSFLERRGEHYRDGRDRPLGAERICSRLSPH 200

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           L+ G L+  +    +     +          ++   L   +  R  +    +     P  
Sbjct: 201 LATGTLARVEVREAVTARMEEAGPDWTRSLGAFRAALAQADVARGAVCPPAAPEGAAPPE 260

Query: 309 PWTEKIE--WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
               +++      +   +A + G TG P +DAA R L+  GW+  RLR +  S  +  L 
Sbjct: 261 DIFARMKDGIASGAARREALRLGETGLPFVDAAARALSATGWLPARLRGLLVSAAMHHLR 320

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           +  R       + L D   A +                  R  +P       DP+G F R
Sbjct: 321 LCERTAGVVIAAGLTDHAPAVHW--------ARVRRAARARPVDPLGLAAALDPEGAFTR 372

Query: 427 HWLPELNNVPTQYIHAPHSWL-DKNDLSLNYPLPIVDHKKACHHTLNQ 473
            WLPEL +VP  ++ AP  W   +  L   YP P+VD   A      +
Sbjct: 373 RWLPELADVPDLFLQAPWRWEGARQLLGRRYPEPLVDPATAIREARRR 420


>gi|327342142|gb|AEA50858.1| cry1-1 [Populus tremula]
          Length = 308

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 85/306 (27%), Positives = 140/306 (45%), Gaps = 12/306 (3%)

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           VR  +  E      +  +SF+  +L  P  + +   + +  +  F +  +      +   
Sbjct: 5   VRDHRAKEILTAQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPL 64

Query: 177 LPVPAIRLTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYY 230
           LP P   ++G V+  PS    F D   +  + +    +  G  NA   L  F    +  Y
Sbjct: 65  LP-PKRIISGDVSRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEY 123

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELI 286
              R       TS LSP+L  G +S R+ ++ ++ + V    +           ++  + 
Sbjct: 124 SMNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFIKSIG 183

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
            RE+ R+L   +P     +P +   +   W  D    +AW+QG TG+P++DA MR+L   
Sbjct: 184 LREYSRYLSFNHP-YTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAA 242

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           GW+H+R+R++ ASF VK L + WR G +YF   LLD DL S+  GWQ+   T  D   + 
Sbjct: 243 GWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDCREFD 302

Query: 407 RIFNPT 412
           RI NP 
Sbjct: 303 RIDNPQ 308


>gi|149210621|ref|XP_001522685.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15]
 gi|86196738|gb|EAQ71376.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15]
          Length = 793

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 107/535 (20%), Positives = 174/535 (32%), Gaps = 107/535 (20%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGI-------------- 53
           +   R DLR++DN  L+      D     ++ V+I         G               
Sbjct: 8   IYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKSPYPEAR 67

Query: 54  ---------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT 104
                       ++ FI  ++  V+ SL            S  D     LD    +    
Sbjct: 68  SKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLKARGDTC 127

Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRV--ICKSFDDSVLLPPGSILNHALQMYKVYTPFR 162
            ++   +  + E++ +  +    + R     K  D+   +    +     Q         
Sbjct: 128 SVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLVDEKYFIDDRDLNFAEPQELPGIFTDY 187

Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--------------- 207
           +  ++ L +   +SLP P      P    +       PF   D                 
Sbjct: 188 RKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYEGFETALLKPVKDFS 247

Query: 208 ----------------FPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYL 249
                           F  GE      L+       +  Y   R+ +     +++LS YL
Sbjct: 248 GAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNGLIGPDFSTKLSAYL 307

Query: 250 SIGVLSPRQCWNRLK----------EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           + G ++ RQ    L           EE             S   EL+WR++ R       
Sbjct: 308 AQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMWRDYMRLYARKIK 367

Query: 300 SVCM-------GKPFI-------------PWTEKIEWNKDSHL----------------L 323
                      G+ +              P  +K+ W                      L
Sbjct: 368 EKLYSVEGPRGGRNYDSSNSGEVVDSGSPPIAKKVIWKTPDPATADPRQIPEPEKIKVCL 427

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             +  G TG  +IDA+MR+L   G+  NR R   A+FL K L +DWR G E++   L+D 
Sbjct: 428 DRFLAGTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHLGIDWRWGAEWYEMLLVDY 487

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           D+ SN   WQ+ A  GND     RIFNP  Q   +D +G +++ W+PEL     +
Sbjct: 488 DVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYVKMWVPELAPFGNK 542


>gi|149279053|ref|ZP_01885187.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
           sp. BAL39]
 gi|149230332|gb|EDM35717.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
           sp. BAL39]
          Length = 410

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 156/392 (39%), Gaps = 22/392 (5%)

Query: 26  LYAACHNSDAKVIAVFIATP-----EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80
           L  A   SD+ ++ V+   P      Q+        ++ F+  S+  ++ S  Q G    
Sbjct: 2   LVEAISKSDS-ILPVYFFDPYYFDPTQFNTVKTGMSRTKFLLESVAALRASFQQLGGDLL 60

Query: 81  YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDS 139
                 +    E +     Q  +++++++R+    E +    +E  L + ++  + F   
Sbjct: 61  VL----YGKPEELMAGLVDQYEISEVYHHREVAPEETQISTKVEDLLWKLKINLRHFIGH 116

Query: 140 VLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199
            L     +      +  V+  F+K   ++ +       P   I          +P   D 
Sbjct: 117 TLYNKEDLPFPIKDIPDVFAQFKKKTERDAMVKSCFLSPDH-IEFVENEDWGQLPGLKDL 175

Query: 200 PFQ-----AIDPMFPIGEQNALHILRKFCKEKVYYYVE---QRDIPAIQGTSQLSPYLSI 251
            F+       +     GE+  L  L     E    Y +   ++       +S+LS +LS+
Sbjct: 176 GFEEETFPGEEDALRGGEEAGLQHLSDLLLEGAAVYQKYTAKQSAEREAFSSRLSGWLSL 235

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G LSPR  +  +KE   +      +     L  L+WR++YR +   + +    +P     
Sbjct: 236 GCLSPRMVYWMVKE--AESKFGSNANFNQMLLGLLWRDYYRFMFKKHGTRFFKEPDFESD 293

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
                +  + +L+ WK   TG+P+ID  M +LN  G++    R++ A++LV  L V W  
Sbjct: 294 FFSSVDPANSVLKKWKTADTGYPLIDNYMTELNDTGYISYTGRLVVATYLVHFLKVHWTN 353

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           G  YF  +L+D   ASN G W   A  G D  
Sbjct: 354 GAVYFEEKLIDYAPASNWGNWANVAGVGKDGK 385


>gi|221638381|ref|YP_002524643.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           KD131]
 gi|221159162|gb|ACM00142.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           KD131]
          Length = 454

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 113/488 (23%), Positives = 169/488 (34%), Gaps = 81/488 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W RNDLR+ D+ AL  A    D +V+ + I  P +W     S RQ  F    L  ++ 
Sbjct: 4   LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRTECLADLRA 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G            D    L   C   R+ ++F        E+  D  L+      
Sbjct: 61  DLAALGAPLAVR----VGDPQAVLSKLCRLHRIRRIFCLEDPAFAEL--DLALQAWAAGT 114

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                                              ++    A     P+PA+   GP+ P
Sbjct: 115 G-----------------------------LELIRLKPGPGAPAALTPLPAVE-PGPIPP 144

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPY 248
           +   R  +          P G      +L+ F + +   Y + R+    A + +S+LSP+
Sbjct: 145 ARALRLAE---DRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLSPH 201

Query: 249 LSIGVLS---------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           L+ G LS               P   W R    F   L    +GA   +      E    
Sbjct: 202 LAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGATGARGAVCPPAAPEGAAP 261

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               +  +  GKP     + +        L A   G TG P +DAA+R +   GW+  RL
Sbjct: 262 PEDIWTRL-KGKP-----DALRLR-----LAALHAGETGLPFVDAALRAMAASGWLPARL 310

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS  +  L +  +       + L D     +    +         V   R  +P  
Sbjct: 311 RGMLASVALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMR--------RVALGRPVDPER 362

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACH--HT 470
                DP G F R WLPEL  VP + + AP  W      L   YP P+VD   A     T
Sbjct: 363 LAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRT 422

Query: 471 LNQYYAAK 478
           L +   A+
Sbjct: 423 LARRPTAR 430


>gi|77462528|ref|YP_352032.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           2.4.1]
 gi|77386946|gb|ABA78131.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           2.4.1]
          Length = 454

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 113/490 (23%), Positives = 170/490 (34%), Gaps = 85/490 (17%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W RNDLR+ D+ AL  A    D +V+ + I  P +W     S RQ  F    L  ++ 
Sbjct: 4   LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRAECLADLRA 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G            D+   L   C   R+ ++         E              
Sbjct: 61  DLAALGAPLAVR----VGDAQAVLSKLCKLHRIGRILCLEDPAFAE-------------- 102

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                            L+ ALQ +   T      ++    A     P+PA+   GP+ P
Sbjct: 103 -----------------LDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVE-PGPIPP 144

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPY 248
           +   R  +          P G      +L+ F + +   Y + R+    A + +S+LSP+
Sbjct: 145 ARALRLAE---DRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLSPH 201

Query: 249 LSIGVLS---------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           L+ G LS               P   W R    F   L     GA   +           
Sbjct: 202 LAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGAPGARGAVCPPG------- 254

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHN 351
                     G     + ++ E   D+  L+      G TG P +DAA+R +   GW+  
Sbjct: 255 ------RPGGGGSPRGYLDQTEGEADALRLRLAALHAGETGLPFVDAALRAMAASGWLPA 308

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           RLR + AS  +  L +  +       + L D     +    +         V   R  +P
Sbjct: 309 RLRGMLASVALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMR--------RVALGRPVDP 360

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACH-- 468
                  DP G F R WLPEL  VP + + AP  W      L   YP P+VD   A    
Sbjct: 361 ERLAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAG 420

Query: 469 HTLNQYYAAK 478
            TL +   A+
Sbjct: 421 RTLARRPTAR 430


>gi|154305828|ref|XP_001553315.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10]
 gi|150853030|gb|EDN28222.1| hypothetical protein BC1G_08145 [Botryotinia fuckeliana B05.10]
          Length = 651

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 107/522 (20%), Positives = 197/522 (37%), Gaps = 92/522 (17%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGI-------- 53
           +  ++ +  +R DLR+ DN  L++   N D     ++ +++   +Q    G         
Sbjct: 2   SHSNILIYLMRRDLRVGDNPVLHSLVDNKDHGFTHLLPLYVFAAQQIEVSGFITTDGCKS 61

Query: 54  ---------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98
                             ++ F+  S+  ++  L +             D+ ++ L    
Sbjct: 62  PYPEARSQIGAFWRCGPHRAKFLAESVWDLKGGLEKIESGLAIR-VGMVDEVVKDLIEGF 120

Query: 99  LQQR---VTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDS-VLLPPGSILNHA-L 152
            +     V+ ++   +  + E R ++  EK   +  V  + + D   L+    I      
Sbjct: 121 QKTGGSKVSAVWMTSEEGVEEKREERSTEKICDKAGVDFQLWQDEKYLIDDRDIPFKDPK 180

Query: 153 QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT------------PSNIPRFFDYP 200
            +  VYT +RK++ + L +A   +LP P      P              P+N        
Sbjct: 181 DLPDVYTTYRKSV-EPLREAPRPALPKPEKNSLPPFPTDVPTQHSPFAIPTNYEEIESAL 239

Query: 201 FQAIDPM------------------FPIGEQNALHILRKFC-KEKVYYYVEQRD-IPAIQ 240
            + I+                    F  GE +A   L        +  Y   R+ +    
Sbjct: 240 LKPINAQPLIKNPPSYPENSLSVHPFTGGESHAQERLEHLITSGSINAYKSSRNGLMGTD 299

Query: 241 GTSQLSPYLSIGVLSPRQCWNRL------------KEEFVDLLIKPKSGAFSWLNELIWR 288
            +++LS YL++G ++ RQ  + +             ++          G +    EL+WR
Sbjct: 300 FSTKLSAYLALGSITSRQIHSSMSIFENGSDSDNRYKDLEGYGKGENEGTYGVRFELLWR 359

Query: 289 EFYRHLMAFYPSVCMG-------KPFIPWTEKIEWNKD-------SHLLQAWKQGYTGFP 334
           ++ R     +             +       +++  +D         +++ +  G TG  
Sbjct: 360 DYMRLCTRKFGPKLFQLGGFKDEENAHSKWSRLDSPRDGVSKEQIQEIIERFLNGTTGMG 419

Query: 335 IIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
            IDA+ R+    G+  NR R   ASFL K L +DWRIG E++   L+D D++SN G WQ+
Sbjct: 420 FIDASQRECYHTGYTSNRARQNVASFLAKHLYIDWRIGAEWYECMLVDYDVSSNWGNWQY 479

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVP 436
            A  GND     RIFNP  Q   +DP+  ++  W+ EL  V 
Sbjct: 480 VAGVGNDPRGNDRIFNPVKQAFDYDPKAEYVLAWVDELRGVD 521


>gi|39971071|ref|XP_366926.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15]
 gi|145017156|gb|EDK01519.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15]
          Length = 770

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 107/535 (20%), Positives = 174/535 (32%), Gaps = 107/535 (20%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGI-------------- 53
           +   R DLR++DN  L+      D     ++ V+I         G               
Sbjct: 8   IYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKSPYPEAR 67

Query: 54  ---------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT 104
                       ++ FI  ++  V+ SL            S  D     LD    +    
Sbjct: 68  SKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLKARGDTC 127

Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRV--ICKSFDDSVLLPPGSILNHALQMYKVYTPFR 162
            ++   +  + E++ +  +    + R     K  D+   +    +     Q         
Sbjct: 128 SVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLVDEKYFIDDRDLNFAEPQELPGIFTDY 187

Query: 163 KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM--------------- 207
           +  ++ L +   +SLP P      P    +       PF   D                 
Sbjct: 188 RKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYEGFETALLKPVKDFS 247

Query: 208 ----------------FPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYL 249
                           F  GE      L+       +  Y   R+ +     +++LS YL
Sbjct: 248 GAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNGLIGPDFSTKLSAYL 307

Query: 250 SIGVLSPRQCWNRLK----------EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
           + G ++ RQ    L           EE             S   EL+WR++ R       
Sbjct: 308 AQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMWRDYMRLYARKIK 367

Query: 300 SVCM-------GKPFI-------------PWTEKIEWNKDSHL----------------L 323
                      G+ +              P  +K+ W                      L
Sbjct: 368 EKLYSVEGPRGGRNYDSSNSGEVVDSGSPPIAKKVIWKTPDPATADPRQIPEPEKIKVCL 427

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             +  G TG  +IDA+MR+L   G+  NR R   A+FL K L +DWR G E++   L+D 
Sbjct: 428 DRFLAGTTGLGLIDASMRELMHTGYTSNRARQNAANFLAKHLGIDWRWGAEWYEMLLVDY 487

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           D+ SN   WQ+ A  GND     RIFNP  Q   +D +G +++ W+PEL     +
Sbjct: 488 DVCSNWANWQYVAGVGNDPRGEARIFNPVKQAFDYDKEGAYVKMWVPELAPFGNK 542


>gi|126461462|ref|YP_001042576.1| DNA photolyase domain-containing protein [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126103126|gb|ABN75804.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 454

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 114/488 (23%), Positives = 170/488 (34%), Gaps = 81/488 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W RNDLR+ D+ AL  A    D +V+ + I  P +W     S RQ  F    L  ++ 
Sbjct: 4   LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRAECLADLRA 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G            +    L   C   R+ ++         E              
Sbjct: 61  DLAALGAPLAVR----VGEPQAVLSKLCRLHRIGRILCLEDPAFAE-------------- 102

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                            L+ ALQ +   T      ++    A     P+PA+   GP+ P
Sbjct: 103 -----------------LDLALQAWAGGTGLDFIRLKPCAGAPAALTPLPAVE-PGPIPP 144

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPY 248
           +   R  +          P G      +L+ F + +   Y + R+    A + +S+LSP+
Sbjct: 145 ARALRLAE---DRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLSPH 201

Query: 249 LSIGVLS---------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           L+ G LS               P   W R    F   L     GA   +      E    
Sbjct: 202 LAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGAPGARGAVCPPAAPEGAAP 261

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               +  +  GKP     + +        L A   G TG P +DAA+R +   GW+  RL
Sbjct: 262 PEDIWTRL-KGKP-----DALRLR-----LAALHAGETGLPFVDAALRAMAASGWLPARL 310

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS  +  L +  +       + L D     +    +         V   R  +P  
Sbjct: 311 RGMLASVALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMR--------RVALGRPVDPER 362

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACH--HT 470
                DP G F R WLPEL  VP + + AP  W      L   YP P+VD   A     T
Sbjct: 363 LAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRT 422

Query: 471 LNQYYAAK 478
           L +   A+
Sbjct: 423 LARRPTAR 430


>gi|255038083|ref|YP_003088704.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
           18053]
 gi|254950839|gb|ACT95539.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
           18053]
          Length = 396

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 166/405 (40%), Gaps = 28/405 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ-----SHFIYASL 65
           + W RNDLR+ DN+AL AA  ++D ++I V++  P Q+ +  +  R+     + F+  S+
Sbjct: 6   IYWFRNDLRLKDNQALSAAVGSAD-EIIPVYVFDPRQFEKTKLGFRRTGALRARFLIESV 64

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            ++++++ QKG        +        +           ++ +++    E R +  L K
Sbjct: 65  AELRENIRQKGGDLIIRTGAPE----AIVAQLAEDYNADYVYTSKEIAPQETRIESSLSK 120

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L+   V  K F    ++    +     ++   +  F + L  +L   D    P  +I L
Sbjct: 121 NLKTANVDIKLFWMDTMINATDLPFPVSKLPSGFAEFERLLSNDLKIKDQFPTPA-SITL 179

Query: 185 TGPVTPSNIPRFFDYPFQ------AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
              V    IP   +                  GE  AL +L+++ +E V    +    P+
Sbjct: 180 PADVEAGAIPGLPELGIDPNEIPAGTTGPLAGGEARALAVLKEYVEEYV---KKDIAYPS 236

Query: 239 IQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
            +    ++LS +LS+G +S    +  +K      +++        +  L+ REF    + 
Sbjct: 237 AEPLTDTRLSDWLSLGCVSASYIYRSVKTAQSHAVVED-----PIITNLLRREFLHWTLL 291

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            +         +       W  D+   + W  G TG   I+  +R+L   G++    R  
Sbjct: 292 RFGPRMFKPSGVKHHFNRRWKNDNAAFEKWINGQTGDQSINDIIRRLTATGFITAAERES 351

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
            A +LV DL ++W  G  YF S L+D + + N G W   A  G D
Sbjct: 352 AARYLVDDLDINWTWGAMYFESLLMDYEASVNWGRWNHIAGVGED 396


>gi|300781310|ref|ZP_07091164.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
           33030]
 gi|300533017|gb|EFK54078.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
           33030]
          Length = 286

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 142/299 (47%), Gaps = 52/299 (17%)

Query: 197 FDYPFQAIDPMFP---IGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTSQLSPYLSIG 252
           FD PF A++ +      GE  A    R F +      Y +  DIP+   TS LS +L  G
Sbjct: 8   FDEPFWAVETLATHCHPGEMQAQRKFRDFLEGLADTSYKDNNDIPSADATSGLSAHLRFG 67

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312
            +SP Q W      F D      + A+++L +L+WR+F  H + + P++   +       
Sbjct: 68  EISPAQIWAE-TAAFADANHTVAADAWAFLRQLLWRDFAWHRLYYIPTLAT-RNVREQFN 125

Query: 313 KIEW---------------------NKDSHL------LQAWKQGYTGFPIIDAAMRQLNT 345
              W                       D         L  W++G TG P++DA MR+L  
Sbjct: 126 AFPWAWTDQPTPGSTTRAFAHPEMVPNDPDEAQHLDELALWQKGETGIPMVDAGMRELWA 185

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G MHNR+RM+  S+L K+L + WR GEE+F   L+D D ASN   WQW A  G+D+ PY
Sbjct: 186 TGTMHNRVRMVVGSWLTKNLGIHWRHGEEWFWDTLVDADYASNPFNWQWVAGCGDDAAPY 245

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHK 464
           FRIFNP +Q ++FDPQG +I  W+PE         H P            YP P+VD K
Sbjct: 246 FRIFNPLLQEEKFDPQGIYINQWVPE--------RHTPM-----------YPEPMVDVK 285


>gi|313230294|emb|CBY07998.1| unnamed protein product [Oikopleura dioica]
          Length = 429

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/373 (25%), Positives = 153/373 (41%), Gaps = 26/373 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH---GISARQSHFIYAS 64
            + +   R DLRI DN +L AA  +   K++ VFI  PEQ  +      S     F+  S
Sbjct: 67  KIAVFIFRRDLRIFDNTSLIAAAADG-FKILPVFIFPPEQIDEKENEYFSHPCVQFMCLS 125

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L QV K L + G    + + +N     + L     +     ++ N  Y    V RD+ + 
Sbjct: 126 LSQVHKELVKIGSKLNFIKLAN----ADALTQLKKEVNFDAVYSNEDYSFYAVSRDQEVR 181

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               ++RV     +D  ++     L+   +  + +  F +    N        +      
Sbjct: 182 SWCRENRVKFVQKEDYGMMKLDENLDKHKRPIRTHAAFMRGFRANCTVRRPTEVAWTPDN 241

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                    IP    + F   +P      G    +  L+ F  EK+  Y  Q ++   + 
Sbjct: 242 FVSFDLNCEIPEQQIHTFYENNPKLAVTPGRSGGMANLKSF--EKLVDYRAQHNMLDQE- 298

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+ SP+   G +S R+ + R  + F +         F  + +L WRE Y  + A  P  
Sbjct: 299 TSRSSPHTKFGTVSVRETYWRGMDLFGED--------FHVIRQLGWREMYLKVYAARPEW 350

Query: 302 CMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             G+      +  ++W+ D  + Q W QG TGFPI+DA MR+LN  G+ HNR RM  AS 
Sbjct: 351 QKGQSIHKILDEHVDWSYDEEVFQKWCQGETGFPIVDAGMRELNETGFQHNRARMNCASV 410

Query: 361 LV---KDLLVDWR 370
           L    + +   W 
Sbjct: 411 LTWGGQLMAAWWE 423


>gi|323335406|gb|EGA76693.1| Phr1p [Saccharomyces cerevisiae Vin13]
          Length = 357

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 159/345 (46%), Gaps = 25/345 (7%)

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQ-------CSNFDDSIEWLDSYCLQQR---V 103
           S  +  FI  +L  +Q+SL++  I     +        SN  + +E+    C+       
Sbjct: 3   SGWKLMFIMGALKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTG 62

Query: 104 TKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
           T +  N +Y+ +E+ RD  L +   HR+  K + DS ++ PG I       Y V+TP+ K
Sbjct: 63  TIITANIEYQTDELYRDIRLLENEDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYK 122

Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGE 212
             +  +      +  +  + +  P+  +       + +   D               + E
Sbjct: 123 KWVLYVNNYKKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSE 182

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE----EFV 268
           + AL  L+ F   K   Y  ++D+  + GTS LS Y++ G +S R   N+  +    + +
Sbjct: 183 EAALSRLKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQSCNGQIM 242

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
              +K  S   +++ E+ WR+FYRH M  +P   MG P+   T  I+W  +    + W  
Sbjct: 243 SKALKDNSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCT 302

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
           G TG PI+DA MR+L   G+++NR RMITASFL K L+    +G 
Sbjct: 303 GNTGIPIVDAIMRKLLYTGYINNRSRMITASFLSKKLINRLEMGG 347


>gi|332557413|ref|ZP_08411735.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
 gi|332275125|gb|EGJ20440.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
          Length = 454

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 113/483 (23%), Positives = 169/483 (34%), Gaps = 81/483 (16%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W RNDLR+ D+ AL  A    D +V+ + I  P +W     S RQ  F    L  ++ 
Sbjct: 4   LIWFRNDLRVADHPALARAA---DDRVLPLAIVDPAEWADPARSGRQWAFRAECLADLRA 60

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G            +    L   C   R+ ++         E              
Sbjct: 61  DLAALGAPLAVR----VGEPQAVLSKLCRLHRIGRILCLDDPAFAE-------------- 102

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                            L+ ALQ +   T      ++    A     P+PA+   GP+ P
Sbjct: 103 -----------------LDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVE-PGPIPP 144

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPY 248
           +   R  +          P G      +L+ F + +   Y + R+    A + +S+LSP+
Sbjct: 145 ARALRLAE---DRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLSPH 201

Query: 249 LSIGVLS---------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           L+ G LS               P   W R    F   L    +GA   +      E    
Sbjct: 202 LATGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGATGARGAVCPPAAPEGAAP 261

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
               +  +  GKP     + +        L A   G TG P +DAA+R +   GW+  RL
Sbjct: 262 PEDIWTRL-KGKP-----DALRLR-----LAALHAGETGLPFVDAALRAMAASGWLPARL 310

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R + AS  +  L +  +       + L D     +    +         V   R  +P  
Sbjct: 311 RGMLASVALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMR--------RVALGRPVDPER 362

Query: 414 QGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND-LSLNYPLPIVDHKKACH--HT 470
                DP G F R WLPEL  VP + + AP  W      L   YP P+VD   A     T
Sbjct: 363 LAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARGLLGRRYPEPLVDPSAARAAGRT 422

Query: 471 LNQ 473
           L +
Sbjct: 423 LAR 425


>gi|312212963|emb|CBX93045.1| hypothetical protein [Leptosphaeria maculans]
          Length = 989

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 117/560 (20%), Positives = 191/560 (34%), Gaps = 128/560 (22%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSD---------------------------- 34
           A     + L  LR D+R++DN   +AA   +                             
Sbjct: 302 AVEKPRILLYILRRDVRLSDNPVFHAASQQTRLNTAAAAKAANPSPQSDRRGRDDSLTSE 361

Query: 35  ------AKVIAVFIATPEQWRQHGI-----------------------SARQSHFIYASL 65
                   ++ V++    Q    G                           +  F+    
Sbjct: 362 HASTDFTHLLPVYVFPANQVEISGFLSSPSDKNPYPEARSQVAKIWRTGPHRIRFMAEGA 421

Query: 66  LQVQKSLSQK--GIVFQYHQCSNFDDSIEWLDSYCLQQR----VTKLFYNRQYEINEVRR 119
             +++ L     G   +    +  D     L+ Y  Q+     VT ++        E   
Sbjct: 422 WDLKRKLESLKCGSGLEMRVGAIPDVVSNILEWYSKQEDSKGKVTGVWMTDDDGTEEKSD 481

Query: 120 DKLLEKRL-QHRVICKSFDDSVLLPPGSIL--NHALQMYKVYTPFRKALI--------QN 168
           +K L+    +HRV  K + D         L   +  ++  VYT +RKAL         + 
Sbjct: 482 EKTLKSLTEKHRVDFKVYRDEKYYVDDRDLSYKNISELPNVYTSYRKALEPLRDRPRNEF 541

Query: 169 LVQADLRSLPVPAIR-----------------LTGPVTPSNIPRFFDYPFQAIDPM---- 207
                L  LP                      L+ P+         + P    D      
Sbjct: 542 PAPTQLPPLPEHIPPQQRPFTIPDNLDALLQALSSPLEKDPTYTLSEPPKYPTDVQSAHP 601

Query: 208 FPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           F  GE +AL+ +        +  Y E R+ +  +  +++LS +L+ G L+ R     + +
Sbjct: 602 FAGGETSALNRVSHLISSGAMSSYKETRNGMLGLDFSTKLSAFLAQGHLTARHVHWAMFD 661

Query: 266 EFVDLL---------IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316
                              +G  +   EL+WR++ R  M  +         I   +  + 
Sbjct: 662 FEEGRGPGKDVKGYGQGENAGTAAVRFELLWRDYMRLCMRKFGDRMFHLYGIQNQDAKDG 721

Query: 317 NKDS---------------------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           N+                            ++ G TG  +IDA+ R+L   G+  NR R 
Sbjct: 722 NRPQMKKWKKLDGSGGAGDDPKQTLEAFTRFRSGRTGVGLIDASNRELFVTGYTSNRARQ 781

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             ASFL   L +DWRIG E++   L D D ASN G WQ+ A  GND     R+FNP  Q 
Sbjct: 782 NVASFLASHLNIDWRIGAEWYECFLTDYDCASNWGNWQYVAGVGNDPRQ-GRVFNPVKQA 840

Query: 416 KRFDPQGTFIRHWLPELNNV 435
             +DP+G +I+ W+PEL  +
Sbjct: 841 FDYDPKGEYIKAWVPELRGI 860


>gi|145354261|ref|XP_001421409.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145354330|ref|XP_001421440.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581646|gb|ABO99702.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581677|gb|ABO99733.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 565

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 104/410 (25%), Positives = 161/410 (39%), Gaps = 33/410 (8%)

Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSI---LNHALQMYKV 157
              T+ F +R+YE      D+     ++           +L  P  I   L      +  
Sbjct: 8   VGATRAFASRRYEPTADADDEETAASVRDACEIVRLPGYLLFEPEKIQIDLRREKYFFGT 67

Query: 158 YTPFRKALIQ-------------NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
             PF  A  +             +    DL      A  L      S++ +  D+    I
Sbjct: 68  LMPFVHAAEKLGGKVGAPRAAPASARVVDLGPEHGFAASLEELGIVSDVDKRLDW-AAGI 126

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWN 261
              + + E  A      F    +  + +     DI A    S LSPYL  G +SPRQ ++
Sbjct: 127 RAEWTMSESGAASTWEHFASVGLEKFEDDHGRADIVAPAAVSTLSPYLRHGQISPRQIYH 186

Query: 262 RLK-EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
            L  ++     ++ K  +  + + L  REF    +  +P +        +  +  W +  
Sbjct: 187 ELATKKMGSDGVEGKKLSRVFWHRLYRREFAYWQLHNWPELPSKSVRGHYENRKAWLEGD 246

Query: 321 HL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
                L  W+ G TGFP +DA MR+L   GWMH   RMI A+FLV    V W  G ++F+
Sbjct: 247 EAAVALHRWQTGTTGFPTVDAGMRRLWATGWMHQSERMIAATFLVDYCGVHWTHGADWFL 306

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVP 436
             L+D DLA N+  WQ A  +G D    F     P    +  DP+G  I  W+PEL  +P
Sbjct: 307 DTLVDADLAINSMMWQNAGKSGLDQWDVFAGSLTPDGSSRAHDPEGESIARWIPELAALP 366

Query: 437 TQYI-HAPHSWLDKN------DLSLNYPLPIV-DHKKACHHTLNQYYAAK 478
             ++ H P     K       +L   YP  ++ D + A    L+   A +
Sbjct: 367 KGHLRHRPWEASAKQLDAAGVELGSTYPTRMITDLEGARRRMLDDVNALR 416


>gi|329909778|ref|ZP_08275122.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546398|gb|EGF31408.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 439

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 100/403 (24%), Positives = 162/403 (40%), Gaps = 28/403 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQ-----WRQHGISARQSHFI 61
           MS  + W RNDLR+ DN A   AC  S + ++ VF   P       W    +   +  F+
Sbjct: 1   MSTVIYWFRNDLRLLDNPAFLLACRES-SHIVPVFCHDPSDRALTHWGFERVGDHRRAFL 59

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
            A+L  +   L+ +G               + L +       T +        +E    +
Sbjct: 60  AATLADLAAQLAARGSELI----ELAGRPQDVLPALARSIGATCIVGEAIAAPDEQDAVQ 115

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L       +       S LL P ++     ++  ++T FR A+ +  V   +       
Sbjct: 116 ALRTA---GLNIDLVWQSSLLEPDALPFSTRRLPDMFTLFRTAVEKADVAPPVPEDYPAL 172

Query: 182 IRLTGPVTPSNIPRFFD----YPFQAIDPMFP-------IGEQNALHILRKFCKEKVYY- 229
           I     +      R+ D     P   +   FP        G    L  L ++ + K+ + 
Sbjct: 173 IPPLPVLPSPLPHRWQDSPPALPDTDVRSSFPYQSAVCAGGTSAGLAHLHQYLERKLAHT 232

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y + R+ +  +  +S+ SP+L+ G LS R     +++   D         +    EL+WR
Sbjct: 233 YKDTRNGLMGLDYSSKFSPWLATGALSARTINAAIEQFEDD--FGANDSTYWLWFELLWR 290

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +++R L   Y         +          D+     W  G TG PI+DA MR+L T G+
Sbjct: 291 DYFRFLHLKYGRKLYRHYGLADAGMARPVHDAAQFARWSHGLTGEPIVDAGMRELATTGY 350

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           + NRLR I AS+L+ DL  DWR G  +F SQL+D D+ S  G 
Sbjct: 351 LSNRLRQIVASYLIHDLGGDWRAGAAWFESQLVDYDVYSQPGQ 393


>gi|269965812|ref|ZP_06179907.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829547|gb|EEZ83786.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 343

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 122/293 (41%), Gaps = 18/293 (6%)

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQ 258
                 M   G + A   L  F   +   Y      P  +    ++LSPYL+ G +S R+
Sbjct: 34  LSKCKGMQTGGSRLAWKTLEDFFHRRGRDYYRSISSPTASRTACTRLSPYLAWGNISLRE 93

Query: 259 CWNRLKEEFVDLLIKPK----SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
            +  L + +     +      S    W    I +    + M FY   C+ + + P  ++ 
Sbjct: 94  VYQYLLKHWQVAGFRRSLIALSSRLHWHCHFIQKFESEYDMEFY---CVNRAYEPLIKQS 150

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
               D   L AWK G+TG P+IDA MR L+  G+++ R+R +  SFL   + +DWR+G  
Sbjct: 151 S-TFDEEKLAAWKSGHTGVPLIDACMRCLHHTGYINFRMRAMLVSFLTHHMNMDWRVGVT 209

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
           +     LD +   +   +Q     G       RI+NP  Q +  DP GTFI  W+PEL  
Sbjct: 210 HLAQLFLDFEPGIHYPQFQMQ--AGVTGTNTIRIYNPIKQAQEHDPNGTFIYKWVPELQM 267

Query: 435 VPTQYIHAPHSWLDKNDL------SLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           VP   +  P +      +         Y  PI+           + +A +K++
Sbjct: 268 VPPPLLFEPWTMTQMEAVMYQLQPDSRYLAPIIAPDNTAKAARERLWAWRKRA 320


>gi|189200290|ref|XP_001936482.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187983581|gb|EDU49069.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 675

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 111/551 (20%), Positives = 185/551 (33%), Gaps = 118/551 (21%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALY-AACHNSD------------------------- 34
           M +     + L  LR D+R++DN   + AA   +                          
Sbjct: 1   MSSKVPR-ILLYVLRRDVRLSDNPIFHTAALQTARQTSWRNSANSDRRHRDDSLTSEHGG 59

Query: 35  ---AKVIAVFIATPEQWRQHGI----------------------SARQSHFIYASLLQVQ 69
                ++ V++ +  Q    G                          +  FI   +  ++
Sbjct: 60  ASFTHLLPVYVWSANQIEVSGFLPASTPSPYPEARSAVAKVWRTGPHRVQFIADGVWDLK 119

Query: 70  KSLSQK--GIVFQYHQC---SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
             L+    G   +           D ++W      +  ++ ++        E R +  L 
Sbjct: 120 NKLADLDCGSGLEQRVGKITEVVSDILDWYAKDENEGEISGVWMTEDDATEEKREEAELA 179

Query: 125 K-RLQHRVICKSFDDSVLLPPG---------SILNHALQMYKVYTPFRKALIQNLVQAD- 173
           K   QH V  K + D                 + N      KV+ P R    + L     
Sbjct: 180 KITKQHGVDFKVWKDEKFYIDDRDLPYDNIADLPNVYTTFRKVFEPLRDRPRETLPTPSL 239

Query: 174 -----------------LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGE 212
                              SL      L  P+           P    D      F  GE
Sbjct: 240 LPPLPPSIPPQKEPFSIPSSLADLKKALLSPLEKDPAYTLKMPPKWPTDAQSAHPFSGGE 299

Query: 213 QNALHILRKFC-KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
              L  +        +  Y + R+ +  +  +++LS YL+ G ++ RQ    + +     
Sbjct: 300 SAGLQRIAHLVASGAMSSYKQTRNGMLGLDFSTKLSAYLAQGHITARQVHWAMLDFEEGR 359

Query: 271 LIKPK---------SGAFSWLNELIWREFYRHLMAFYPSVCMG----------------- 304
               K          G  +   EL+WR++ R  M  +     G                 
Sbjct: 360 GPGEKKHAYGQGENEGTAAVRFELLWRDYMRLCMRKFGHKMFGLYGIQDRGAKGSQHKKW 419

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
           K      +  +  K   + + ++ G TG  +IDA+ R+L   G+  NR R   ASFL   
Sbjct: 420 KKLYKGEDGEDPQKTMEVFERFRSGRTGVGLIDASNRELFVTGYTSNRARQNVASFLSSH 479

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           L +DWR+G E++   L+D D ASN G WQ+ A  GND     R+FNP  Q   +D +G +
Sbjct: 480 LNIDWRVGAEWYECFLVDYDAASNWGNWQYVAGVGNDPRQ-GRVFNPVKQALDYDKRGEY 538

Query: 425 IRHWLPELNNV 435
           I+ W+PEL ++
Sbjct: 539 IKAWVPELRDI 549


>gi|212721834|ref|NP_001132651.1| hypothetical protein LOC100194126 [Zea mays]
 gi|194694998|gb|ACF81583.1| unknown [Zea mays]
          Length = 428

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 10/222 (4%)

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           +     +     +L  +  RE+ R+L   +PS    +P +       W  D    + W+Q
Sbjct: 9   EGNHAAEESCTLFLRSIGLREYSRYLSFNHPS-SHERPLLAHLRFFPWVVDESYFKIWRQ 67

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG+P++DA MR+L   GW+H+R+R++ ASF VK L + WR G +YF   LLD DL S+
Sbjct: 68  GRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESD 127

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH---- 444
             GWQ+   +  D     RI NP  +G +FDP G ++R W+PEL  +PT++IH P     
Sbjct: 128 ALGWQYITGSLPDGRELDRIDNPQFEGYKFDPHGEYVRRWIPELARLPTEWIHHPWDAPV 187

Query: 445 SWLDKNDLSL--NYPLPIVDHKKAC---HHTLNQYYAAKKQS 481
           S L    + L  NYPLPIV+   A       L++ +  +  S
Sbjct: 188 SVLQAAGIELGSNYPLPIVELDAAKGRLQAALSEMWQLEAAS 229


>gi|221124384|ref|XP_002163516.1| PREDICTED: similar to cryptochrome dash [Hydra magnipapillata]
          Length = 438

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 98/445 (22%), Positives = 161/445 (36%), Gaps = 45/445 (10%)

Query: 18  LRITDNKALYAACHNSDAKVI----AVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
           +R+ DN A   AC      +      V  A    W   G+S  +  +  A++ ++++ L 
Sbjct: 1   MRLQDNPAWTRACAMGRPVLAVTFAPVLSAREAAWGIPGLSPSRKAWWAATVQELRRELD 60

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133
             G+     +  +     E L           L         E      L       ++ 
Sbjct: 61  ALGVSLLVLRGGSM----EALVRLFEASGAVALVCEEIAAPYER---AQLSSLRASGIVV 113

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI 193
            S     L     +      +  V+T FR  + +  V      LP P       +    +
Sbjct: 114 HSVWQGTLFKAEDLPFSVTDLPGVFTRFRNEVERAKVPFR-TPLPAPVNVTGYDLACDAV 172

Query: 194 PRFFDY----------PFQAIDPMFPIGEQNA-----------------LHILRKFCK-E 225
               D+                  +  G   A                    L+ + +  
Sbjct: 173 SFAEDFVDGAAAGKFVADPRSAFQWRSGSSGANDEVLHLDEVLAGSGGGHAYLQHYLESG 232

Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           +V  Y   R+ +  +  +S+ SP+L++G +S  +    LK    +       G++    E
Sbjct: 233 RVAQYKATRNGLTGMAYSSKWSPWLALGAVSAPELMAALKAHEREHGT--TDGSYWLWFE 290

Query: 285 LIWREFYRHLMAFYPSVCMG-KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           L+WR+++R L   Y +     K  +   +             W QG TG  ++DA MR+L
Sbjct: 291 LLWRDYFRWLHLQYGAGLYRPKGLLEAAKSERVPHHRRSFTLWTQGRTGCDLVDAGMREL 350

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
              G++ NR+R + ASFL+ +L  DWR G  +F SQLLD D+ SN G W + A  G D  
Sbjct: 351 ACSGYLSNRMRQVVASFLIYELGCDWRAGAAWFESQLLDFDVYSNQGNWLYIAGLGTDPR 410

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHW 428
              R FN   Q    DP G +   W
Sbjct: 411 GGRR-FNVAKQTADHDPDGAYRALW 434


>gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus]
          Length = 359

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 86/365 (23%), Positives = 140/365 (38%), Gaps = 25/365 (6%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFIATPEQW-RQHGISARQSHFIYASLLQVQKSLSQ 74
             LR+ DN  L AA  +S+A +  V+I           I A + +F+  SL  + K+L Q
Sbjct: 1   KGLRLHDNPVLLAALESSEA-LYPVYILDRAFLTSSMHIGALRWNFLLQSLEDLHKNLGQ 59

Query: 75  KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQHRVIC 133
            G      Q     +    L  +  +  +T++  + + E      +  +++  ++     
Sbjct: 60  LGSCLLVIQG----EYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGVELGFEV 115

Query: 134 KSFDDSVLLPPGSILN-HALQMYKVYTPFRKAL---------IQNLVQADLRSLPVPAIR 183
            S     L     IL+ +       Y  F   L         ++N+   D +    P   
Sbjct: 116 FSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPEVPVRNVTAEDFQRCRAPDPG 175

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPA--I 239
           L               P       +  GE   L  L +   ++ +   + + R +P   +
Sbjct: 176 LAECYRVPLPVDLKISPESLSP--WRGGETEGLQRLERHLTDQGWVTSFTKPRTVPNSLL 233

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
             T+ LSPY S+G LS R  + RL   +            S   +L+WREF+  + +  P
Sbjct: 234 PSTTGLSPYFSMGCLSVRTFFYRLSNIYAQAK-HHSLPPVSLQGQLLWREFFYTVASATP 292

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +        P   +I W KD+  L  WK   TGFP IDA M QL   GW+H+  R   A 
Sbjct: 293 NFT-QMAGNPICLQICWYKDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVAC 351

Query: 360 FLVKD 364
           FL + 
Sbjct: 352 FLTRG 356


>gi|28625001|emb|CAD24679.1| photolyase related protein [Aphrocallistes vastus]
          Length = 563

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 100/489 (20%), Positives = 189/489 (38%), Gaps = 40/489 (8%)

Query: 8   SVHLVWLRND-LRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            V L    N  LR+ DN ALY A   +  K  AV+I     +    ++  +  F+   L 
Sbjct: 45  KVLLHIFNNRHLRLKDNTALYQAMAQNPDKFYAVYIFD--GFDSKPVAPVRWQFLIDCLE 102

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++ L+  G+     +       I+ L +     +V  L  N   ++N    ++ + K 
Sbjct: 103 DLKEQLNGFGLELYCFRGET----IDVLATLVQAWKVKLLSINMDPDVNFTFFNEKIVKM 158

Query: 127 LQHRVICKSFDD----SVLLPP----GSILNHALQ--MYKVYTPFRKALIQNLVQADLRS 176
                  + ++D     +L  P     +I     +  + +  T  +  L       D+  
Sbjct: 159 CTIN-AVQLYNDMDSHRLLYLPPKYKSAIPMSKFRVLLAEAITAKQNNLESEAKIQDITP 217

Query: 177 LPVP--------AIRLTGPVT---PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
              P          RL  P+    P     F +     ++ +F  GE+     L ++ + 
Sbjct: 218 PLNPEQLSDLGNKPRLDSPLPSEIPKLNALFTEEEIAKLNFIFQGGERRTEDYLNEYREA 277

Query: 226 KVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           ++       D  P       +SP+L  G ++PR  +N L +   D            L  
Sbjct: 278 RLRDVSGDEDASPIAAKAMGISPHLRFGCITPRHLFNFLVKTIKDANYSRIK-INKVLAG 336

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQL 343
           ++ R+F   +                   I W+  ++ +++      TGFP  DAA+ QL
Sbjct: 337 IMARDFALQVSQLQTIPERIISLNKICLPIPWDKNNNEIVEKLTDAQTGFPFFDAAITQL 396

Query: 344 NTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
            T G++ N +    A+F+    L V W  G+ +F   L+  DLA +   W  A+ +   +
Sbjct: 397 KTEGYVINEVSEALATFVTNSLLWVSWEEGQNFFSQHLICFDLAMSTHSWLEASGSTMVT 456

Query: 403 VPYFRIFNP-TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLN 455
                  +P     K+ DP G +I+ +LP+  N P ++IH P +   +        + ++
Sbjct: 457 GRQKSYQDPLLFVSKKLDPNGEYIKRYLPKFINFPIEFIHKPGNASLEAQQAANCVIDID 516

Query: 456 YPLPIVDHK 464
           YP P+ +++
Sbjct: 517 YPKPLFEYE 525


>gi|156752080|gb|ABU93792.1| cryptochrome 3 [Carassius auratus]
          Length = 237

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 107/231 (46%), Gaps = 8/231 (3%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRL 263
           +  GE  AL  L K    K +    +R     Q      + LSPYL  G LS R  +  L
Sbjct: 10  WKGGETEALERLNKHLDRKAWVANFERPRITAQSLFASPTGLSPYLRFGCLSCRVFYYNL 69

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            E ++ L  +  S   S   +L+WREF+       P+    +   P   +I W+ +   L
Sbjct: 70  WELYMKLR-RSSSPPLSLFGQLLWREFFYTAGTNNPNFDHMEG-NPICVQIPWDHNPEAL 127

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLD 382
             W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD
Sbjct: 128 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLLD 187

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
            D + N G W W  S       +F  + P   G+R DP G +IR ++P+L 
Sbjct: 188 ADWSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYIPKLK 237


>gi|330920090|ref|XP_003298886.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1]
 gi|311327731|gb|EFQ93028.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1]
          Length = 678

 Score =  199 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 111/552 (20%), Positives = 188/552 (34%), Gaps = 119/552 (21%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALY-AACHNSD------------------------- 34
           M +     + L  LR D+RI+DN   + AA   +                          
Sbjct: 1   MSSKVPR-ILLYVLRRDVRISDNPIFHTAALQTARQTSWRNSANSDRRHRDDSLTSEHGG 59

Query: 35  ---AKVIAVFIATPEQWRQHGI----------------------SARQSHFIYASLLQVQ 69
                ++ V++ +  Q    G                          +  FI   +  ++
Sbjct: 60  ASFTHLLPVYVWSANQIEVSGFLPASTPSPYPEARSAVAQVWRTGPHRVQFIADGVWDLK 119

Query: 70  KSLSQK--GIVF---QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
             L+    G               D + W      +  ++ ++        E + +  L 
Sbjct: 120 NKLAGLDCGSGLEQRVGRLTEVVSDILNWYSKDENEGVISGVWMTEDDATEEKQEEAELA 179

Query: 125 K-RLQHRVICKSFDDS--VLLPPGSILNHALQMYKVYTPFRKALI--------------- 166
           +   QH +  K + D    +       ++   +  VYT FRKA                 
Sbjct: 180 EITKQHGIDFKVWKDEKFYIDDRDLPYDNIADLPNVYTTFRKAFEPLRDRPRETLPTPSQ 239

Query: 167 ----------QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGE 212
                     Q    +   SL      L  P+           P    D      F  GE
Sbjct: 240 LPPLPPSIPPQKEPFSIPSSLADLKKALLSPLEKDPAYTLKMPPKWPTDAQSAHPFSGGE 299

Query: 213 QNALHILRKFC-KEKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLK------ 264
              L  +        +  Y + R+ +  +  +++LS YL+ G ++ RQ    +       
Sbjct: 300 SAGLQRIAHLVASGAMGSYKQTRNGMLGLDFSTKLSAYLAQGHITARQVHWAMFDFEEGR 359

Query: 265 ---EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM--------------GKPF 307
              E+          G  +   EL+WR++ R  M  +                    K +
Sbjct: 360 GPGEKRHAYGQGENEGTAAVRFELLWRDYMRLCMRKFGHKMFALYGIQDRGAKGSQHKKW 419

Query: 308 IPWTEKIEWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
               +  E  ++      + + ++ G TG  +IDA+ R+L   G+  NR R   ASFL  
Sbjct: 420 KKLHKSGEDGENPQKTMEIFERFRSGRTGVGLIDASNRELFVTGYTSNRARQNVASFLSS 479

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
            L +DWRIG E++   L+D D ASN G WQ+ A  GND     R+FNP  Q   +D +G 
Sbjct: 480 HLNIDWRIGAEWYECFLVDYDAASNWGNWQYVAGVGNDPRQ-GRVFNPVKQALDYDKRGE 538

Query: 424 FIRHWLPELNNV 435
           +I+ W+PEL ++
Sbjct: 539 YIKAWVPELRDI 550


>gi|465501|sp|Q05380|YAT1_SYNP1 RecName: Full=Uncharacterized 31.6 kDa protein in atpI 5'region;
           AltName: Full=URF1
 gi|480494|pir||S36967 hypothetical protein 1 (uncI 5' region) - Synechococcus sp.  (PCC
           6716)
 gi|49221|emb|CAA49877.1| unnamed protein product [Synechococcus sp.]
          Length = 284

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 115/284 (40%), Gaps = 8/284 (2%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           HL W R DLR+ DN  LYAA  ++   V+ VF   P   +   ++A +  ++   L  ++
Sbjct: 6   HLFWHRRDLRLADNLGLYAARQHTPT-VVGVFCFDPALLQGQDVAAVRVAYLLGCLQALK 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           ++  Q+G      Q        E   +     + T + ++   E     RD+++   L  
Sbjct: 65  EAYQQRGGCLLMVQGDPRQVIPEVATTL----KATAVHWHEDVEPYARERDRVVAATLND 120

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I      D +L PP ++     Q Y VYTPF +        A +   P  A      +
Sbjct: 121 LGIAVHRQWDQLLHPPSAVQTQQGQPYTVYTPFWRNWSALPKAAPVPPPPDFAPLEATEI 180

Query: 189 TPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               +P   D  F     +    GE  A   L  F +  +Y Y EQR+ P   GT+ LSP
Sbjct: 181 ASIPLPSTHDLGFDWSGELILAPGEAAAAQQLAHFSQHAIYEYGEQRNYPGRPGTALLSP 240

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREF 290
            L  GV+  R  W   +         + ++   +W  EL WREF
Sbjct: 241 ALKFGVIGIRTVWAASEAALEHARSDEARASIRTWQQELAWREF 284


>gi|46129334|ref|XP_389028.1| hypothetical protein FG08852.1 [Gibberella zeae PH-1]
 gi|97047717|sp|Q4I1Q6|CRYD_GIBZE RecName: Full=Putative cryptochrome DASH
          Length = 678

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 111/527 (21%), Positives = 189/527 (35%), Gaps = 93/527 (17%)

Query: 11  LVWLRNDLRITDNKALYAAC--HNSDAKVIAVFIATPEQWRQHGI--------------- 53
           +  LR DLR TDN  L+      +    ++ ++I  P Q    G                
Sbjct: 8   VYLLRRDLRATDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVVEGQKSPYPLAKSQ 67

Query: 54  -------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR-VTK 105
                     ++ F    +  V+K+    G           D     + S     + +  
Sbjct: 68  VGRFWRCGPLRAKFQAECIWDVKKNFENIGSGMLIRIGKFDDVLKHLIKSLNEDHQSIDT 127

Query: 106 LFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLL--------------------PP 144
           ++   +    E+     +     +  +  K + D                          
Sbjct: 128 VWMTEEPSKEELDDQTAVASVCSKEGIGFKLWHDEKYFIDEKTQEPLRERPRPPLPRPQA 187

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
           GS+ +    +     PFR     +  +  L   PV A  ++ P         F    ++ 
Sbjct: 188 GSLPSFPSWIPPQQAPFRIPDDYDEFER-LLLEPVKAPIISDPPQ-------FPEGAKSA 239

Query: 205 DPMFPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNR 262
            P F  GE  A   L    K   +  Y E R+ +   + +++LS +L++G ++ R     
Sbjct: 240 HP-FKGGETPAWDRLYHLIKSGAMTTYQETRNGLLGTEYSTKLSAFLAMGTITARSIHAE 298

Query: 263 LKE----------EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG-------- 304
           L +                     G  +   EL+WR++ R     + +            
Sbjct: 299 LVKFEDGSEESYSRGFGFGKGENEGTRAVRFELLWRDYMRLCTFKFRTRLFKIDGFKGAS 358

Query: 305 -----KPFIPWTEKIEWNKDS------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                K      E  E +++        ++  W +G TG  ++DA+ R+L   G+  NR 
Sbjct: 359 GNYTKKWLTDREEDAEPDQNPTPAQVKDMIDRWIRGTTGMGLVDASQRELQLTGYTSNRA 418

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
           R   AS+L K L +DWR+G EY+   L+D D  SN G WQ+ AS GND  P  R FN   
Sbjct: 419 RQNVASYLTKSLGIDWRLGAEYYEQSLIDYDTHSNWGNWQYQASCGND--PRSRSFNQVK 476

Query: 414 QGKRFDPQGTFIRHWLPELNNVPT-QYIHA----PHSWLDKNDLSLN 455
           Q   +D  G F R W+ E+ ++   +++      P   L+K+ LS N
Sbjct: 477 QAFDYDQDGRFTRTWVNEVKSIDRLEHVFQICTCPKQELEKHGLSDN 523


>gi|77963990|gb|ABB13336.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
          Length = 350

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 9/185 (4%)

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I +SF 
Sbjct: 1   THERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFA 60

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK LL+ W  G +YF   LLD D+ S+  GWQ+ +    D     R+ NP +QG+++DP 
Sbjct: 61  VKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPD 120

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH---HTLN 472
           G ++R W+PEL  +P ++IH P             +L  NYP+PIV+   A       ++
Sbjct: 121 GEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARECLDDAIS 180

Query: 473 QYYAA 477
             +  
Sbjct: 181 TMWQL 185


>gi|90085022|dbj|BAE91252.1| unnamed protein product [Macaca fascicularis]
          Length = 278

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/180 (35%), Positives = 91/180 (50%), Gaps = 8/180 (4%)

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366
            P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL 
Sbjct: 4   NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 63

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + W  G + F   LLD D + N G W W  S  +    +F  + P   G+R DP G +IR
Sbjct: 64  ISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR 122

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LP L   P +YI+ P +  +      K  + +NYP P+V+H +A    + +     +Q
Sbjct: 123 RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINYPKPMVNHAEASRLNIERMKQIYQQ 182


>gi|77963986|gb|ABB13334.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
 gi|77963988|gb|ABB13335.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
          Length = 350

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 9/185 (4%)

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              +  +   +   W  D    ++W+QG TG+P++DA MR+L   GW HNR+R+I +SF 
Sbjct: 1   THERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFA 60

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           VK LL+ W  G +YF   LLD D+ S+  GWQ+ +    D     R+ NP +QG+++DP 
Sbjct: 61  VKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPD 120

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACH---HTLN 472
           G ++R W+PEL  +P ++IH P             +L  NYP+PIV+   A       ++
Sbjct: 121 GEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHMARECLDDAIS 180

Query: 473 QYYAA 477
             +  
Sbjct: 181 TMWQL 185


>gi|74025462|ref|XP_829297.1| DNA photolyase [Trypanosoma brucei TREU927]
 gi|70834683|gb|EAN80185.1| DNA photolyase, putative [Trypanosoma brucei]
          Length = 848

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 106/548 (19%), Positives = 175/548 (31%), Gaps = 108/548 (19%)

Query: 16  NDLRITDN----KALYAACHNSDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64
           ND+R+ DN     A   A       VIAV +     + Q          S  ++ F   +
Sbjct: 214 NDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAVGGFFRQSPMRARFFLET 273

Query: 65  LLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           L  ++  L  +  I          D     +    ++     +F   QY  +E      +
Sbjct: 274 LAALRYKLERELRIPLLVRCGRPEDH----IPRLVVECGAIDVFLTTQYTPHEKEVHNDI 329

Query: 124 EKRLQHRVIC-------------------------------------------KSFDDSV 140
            + +  R                                               S   + 
Sbjct: 330 VEAITQRRWVSRDPTAGYKATEHDATVVHPFGVTSASTKVGVKESRLTAAPVAHSVWQTT 389

Query: 141 LLP------------------PGSILNHALQMYKVYTPFRKALIQNLVQADLRSL----- 177
           L+                      +    ++    +      L     + DL        
Sbjct: 390 LVHIDDLPVPVASMVEGERWYHDDVTTANIRPTAAFDRCINRLSDLPARGDLLPTTGELS 449

Query: 178 ---PVPAIRLTGP----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE----K 226
              P P  R   P    +   +   F +    A     P GE  A+  +  +  +     
Sbjct: 450 GLEPPPLYRGRAPTLVELGYGSPEAFIEEEVIATQSSHPPGEDAAIERVLDWLMDGGMTS 509

Query: 227 VYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSW 281
           +  Y   R        Q  S+LSPYLS G LSPR+ +  L+    + L     +      
Sbjct: 510 MLRYGRDRRTNTKMYSQRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNFVQQQYREA 569

Query: 282 LNELIWREFYRHLMAFYPSVCMGK--PFIPWTEKI-EWNKDSHLLQAWKQGYTGFPIIDA 338
           L  L  R+++  +   Y  +   +  P    T+ I +W  D  ++Q W  G TG P  DA
Sbjct: 570 LLRLSRRDYWHWMGLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGLTGIPFADA 629

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           AMR+L   G++ +  R      L +    DWR+G E+     +D D     G   + +  
Sbjct: 630 AMRELTLTGFVADEGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYGNCAYYSEL 689

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DL 452
             D      + N        D  G +++ WLP+L+ +P  YIH PH   ++        L
Sbjct: 690 VRDDFGET-VRNIHWLAHHHDQTGIYVKKWLPQLSKIPPVYIHRPHVLTERMQAMHGVQL 748

Query: 453 SLNYPLPI 460
             NYP P+
Sbjct: 749 GKNYPYPL 756


>gi|51948354|gb|AAU14281.1| cryptochrome-like protein 2 [Ostreococcus tauri]
          Length = 548

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 101/414 (24%), Positives = 158/414 (38%), Gaps = 41/414 (9%)

Query: 104 TKLFYNRQYEINEVRRDKLLE-KRLQHRVICKSFDDSVLLPPGSILNH---ALQMYKVYT 159
           T++F +++YE      D+    +     V        +L  P  +          +    
Sbjct: 1   TRVFASKRYEPENAEADERASVEMAVRGVELVRTRGFLLFEPSEVRIDVAARDGYFGTLM 60

Query: 160 PFRKALIQNLVQADLRSLPVPAIRL----TGPVTPSNIPRFFDYP-----------FQAI 204
           PF  A  +              +R+    T            D                I
Sbjct: 61  PFVHAAERTCGDPGKPKPAPVDVRMVDLGTESDHEWEQIGLEDLGVAPASDRRVDWSAGI 120

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWN 261
              + I E  A+    +F    +  +  +    D  A    S+LSPYL  G++SPR  ++
Sbjct: 121 RADWDISEGGAVETWSQFTAVGLDRFEAEHGRADPEAGVTVSRLSPYLRFGMISPRTVYH 180

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW---NK 318
            L      +    K+ + ++ + L  RE     +  +P +          E   W   ++
Sbjct: 181 DL------VKKDGKNISKTFWHRLYRRELAYWQLHHWPDLPKT-SVRSHYENRAWLSGDE 233

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
               L+ W++G TGFP++D  MR+L   GWMH   RMITA+FLV  L V W  G ++FM 
Sbjct: 234 ADEALRRWQRGETGFPVVDCGMRRLWRTGWMHQTERMITATFLVDYLGVHWTRGADWFMR 293

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
            L+D D A N+  WQ A  +G D   +F     P    +  DP G  I  W+PEL  +P 
Sbjct: 294 TLVDADEAINSMMWQNAGKSGLDQWDFFEGTLAPDGSARAHDPHGDAIARWIPELAALPR 353

Query: 438 QYI-HAPHSWLDKN------DLSLNYPLP-IVDHKKACHHTLNQYYAAKKQSLL 483
            Y+ H P             +L   YP   IVD  +A    L+     +   L+
Sbjct: 354 GYLRHRPWEASKATLAECDVELGSTYPRRMIVDLDRARQRMLDDVTTIRHAELV 407


>gi|261335266|emb|CBH18260.1| DNA photolyase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 848

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/548 (19%), Positives = 175/548 (31%), Gaps = 108/548 (19%)

Query: 16  NDLRITDN----KALYAACHNSDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64
           ND+R+ DN     A   A       VIAV +     + Q          S  ++ F   +
Sbjct: 214 NDMRVHDNYALALAATRAEAAGGLPVIAVTVVDYRMFAQPSAVGGFFRQSPMRARFFLET 273

Query: 65  LLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           L  ++  L  +  I          D     +    ++     +F   QY  +E      +
Sbjct: 274 LAALRYKLERELRIPLLVRCGRPEDH----IPRLVVECGAIDVFLTTQYAPHEKEVHNDI 329

Query: 124 EKRLQHRVIC-------------------------------------------KSFDDSV 140
            + +  R                                               S   + 
Sbjct: 330 VEAINQRRWVSRDPTAGYKAIEHDATVVHPFGATSASTKVGVKESRLTAAPVAHSVWQTT 389

Query: 141 LLP------------------PGSILNHALQMYKVYTPFRKALIQNLVQADLRSL----- 177
           L+                      +    ++    +      L     + DL        
Sbjct: 390 LVHIDDLPVPVASMVEGERWYHDDVTTANIRPTAAFDRCINRLSDLPARGDLLPTTGELS 449

Query: 178 ---PVPAIRLTGP----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE----K 226
              P P  R   P    +   +   F +    A     P GE  A+  +  +  +     
Sbjct: 450 GLEPPPLYRGRAPTLVELGYGSPEAFIEEEVIATQSSHPPGEDAAIERVLDWLMDGGMTS 509

Query: 227 VYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSW 281
           +  Y   R        Q  S+LSPYLS G LSPR+ +  L+    + L     +      
Sbjct: 510 MLRYGRDRRTNTKMYSQRLSRLSPYLSCGALSPRRFYEELRRFTSEHLRDNFVQQQYREA 569

Query: 282 LNELIWREFYRHLMAFYPSVCMGK--PFIPWTEKI-EWNKDSHLLQAWKQGYTGFPIIDA 338
           L  L  R+++  +   Y  +   +  P    T+ I +W  D  ++Q W  G TG P  DA
Sbjct: 570 LLRLSRRDYWHWMGLRYGPLLFYEYGPRPEHTDDIADWRHDPKIVQKWCAGLTGIPFADA 629

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           AMR+L   G++ +  R      L +    DWR+G E+     +D D     G   + +  
Sbjct: 630 AMRELTLTGFVADEGRQGLIWLLSRGYGQDWRLGAEWLERCSIDYDPFVCYGNCAYYSEL 689

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DL 452
             D      + N        D  G +++ WLP+L+ +P  YIH PH   ++        L
Sbjct: 690 VRDDFGET-VRNIHWLAHHHDQTGIYVKKWLPQLSKIPPVYIHRPHVLTERMQAMHGVQL 748

Query: 453 SLNYPLPI 460
             NYP P+
Sbjct: 749 GKNYPYPL 756


>gi|148261329|ref|YP_001235456.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5]
 gi|146403010|gb|ABQ31537.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Acidiphilium cryptum JF-5]
          Length = 389

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 107/262 (40%), Gaps = 9/262 (3%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
            G   AL  L  F   +   Y      P       S+LSPY + G +S R+         
Sbjct: 46  PGRAAALATLGSFLATRGEDYTRAMSSPVSGEAACSRLSPYFAYGCVSIREAAQAAWRRQ 105

Query: 268 VDLLIKPKSGA--FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
            ++    + GA   S++  L W   +   +   P     +PF    E +    D   L A
Sbjct: 106 REVPAASRWGAALRSFIARLHWHCHFIQKLEAEPE-AEWRPFARIYEGMRPPADPARLAA 164

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           W +G TG+P IDAAMR L   GW++ R+R +  SF   DL + W+           D + 
Sbjct: 165 WAEGRTGYPFIDAAMRYLAAHGWINFRMRAMLMSFASHDLFLPWQESGLVLARLFTDYEP 224

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
             +    Q    +G   +   R+++P  QG   DP G  IR  +PEL  V    +H P  
Sbjct: 225 GIHWPQCQMQ--SGETGINTVRVYSPVKQGFDQDPAGRLIRLHVPELAAVAGALVHEPWR 282

Query: 446 W--LDKNDLSLNYPLPIVDHKK 465
               ++  L   YP  IV H++
Sbjct: 283 LDAAERARLCPEYPARIVIHEE 304


>gi|313231152|emb|CBY19150.1| unnamed protein product [Oikopleura dioica]
          Length = 251

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 89/244 (36%), Positives = 135/244 (55%), Gaps = 15/244 (6%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GT+++S +L  G +S R+ + R  E F +            + +L++R+FY  + +  P 
Sbjct: 6   GTTKMSAHLKFGTVSIREMYWRTAELFGERHD--------LIRQLVFRDFYLKIYSHNPE 57

Query: 301 VCMGKPFIPWTE-KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
           +  G       + +I W+ D  L  AW +G TGFP++DAA RQL  IGW HNR+RM+T  
Sbjct: 58  LQRGTALQAGVDERIPWSDDEKLWTAWCEGMTGFPLVDAAQRQLKEIGWQHNRMRMLTGC 117

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRF 418
            L K  ++DWR G ++F   L+D D+ +N  GW W +STG D+VPYFR  FNP IQ K+F
Sbjct: 118 VLTKYFMIDWRKGMKFFYQNLVDADVFNNTAGWGWVSSTGPDAVPYFRPPFNPWIQSKKF 177

Query: 419 DPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLN-----YPLPIVDHKKACHHTLNQ 473
           D +G +I+ ++PEL +V    +H       +     N     YP P+V H +A  + +  
Sbjct: 178 DLEGKYIKQYIPELADVSPADLHKWGDASIRAKYKKNKKVQAYPAPVVKHDEASKNAVYL 237

Query: 474 YYAA 477
           Y  A
Sbjct: 238 YKKA 241


>gi|157130453|ref|XP_001655724.1| DNA photolyase [Aedes aegypti]
 gi|108881984|gb|EAT46209.1| DNA photolyase [Aedes aegypti]
          Length = 321

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 87/313 (27%), Positives = 128/313 (40%), Gaps = 26/313 (8%)

Query: 146 SILNHALQMYKVYTPFRKALIQNLVQ-ADLRSLPVPAIRLT-----------GPVTPSNI 193
           SI    ++      P      Q ++   D    P PAI L                   +
Sbjct: 13  SIAFRIIEKNGGRAPLTYHQFQAIIASMDAPPQPEPAITLDTIANATTPQYEDHDDKYGV 72

Query: 194 PRFFDYPFQ--AIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLS 246
           P   +  F+   + P+ +  GE  AL  L +  + K +     R     Q      + LS
Sbjct: 73  PTLEELGFETEGLKPLIWVRGETEALARLERHLERKAWVASFGRPKMTPQSLLARQTGLS 132

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           PYL  G LS R  + +L + +    IK      S   +L+WREF+       P+      
Sbjct: 133 PYLRFGCLSTRLFYYQLTDLYKK--IKKACPPLSLYGQLLWREFFYCAATKNPNFDKM-A 189

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DL 365
             P   +I W++++  L  W  G TGFP IDA M QL   GW+H+  R   A FL + DL
Sbjct: 190 GNPICVQISWDRNAEALAKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDL 249

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            +    G + F   LLD D + N G W    S  +    +F  + P   G++ DP G +I
Sbjct: 250 WISCEEGMKVFEELLLDADWSVNAGMW---LSCSSFFQQFFHCYCPVKFGRKADPNGDYI 306

Query: 426 RHWLPELNNVPTQ 438
           R +LP L  V  +
Sbjct: 307 RRYLPVLKEVNKK 319


>gi|326523445|dbj|BAJ92893.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 420

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 10/222 (4%)

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           +     + G   +L  +  RE+ R+L   +P     KP +       W  +    + W+Q
Sbjct: 9   ESNRDGEEGCSLFLRSIGLREYSRYLAFNHP-CSHEKPLLAHLRFFPWVVNEVYFKVWRQ 67

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+
Sbjct: 68  GRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESD 127

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
             GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PT++IH P    +
Sbjct: 128 ALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIHHPWDAPE 187

Query: 449 KN------DLSLNYPLPIVDHKKACHH---TLNQYYAAKKQS 481
                   +L  NYPLPIV+  +A       L++ +  +  S
Sbjct: 188 SVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWELEAAS 229


>gi|320589803|gb|EFX02259.1| DNA photolyase [Grosmannia clavigera kw1407]
          Length = 893

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 117/590 (19%), Positives = 199/590 (33%), Gaps = 145/590 (24%)

Query: 11  LVWLRNDLRITDNKALYAACHN----SDAKVIAVFIATPEQWRQHGI------------- 53
           +  LR DLR+ DN+ L+    N    +   ++ +++    Q    G              
Sbjct: 24  IYILRRDLRVADNRILHEVSTNPTKYNFTHMLPLYVFAANQIEVSGFIPRSSNTTSPYPE 83

Query: 54  -----------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ-Q 101
                         ++ FI   L  V++SL   G           +     +     +  
Sbjct: 84  AKSKIVGYWRCGPHRARFISECLADVKQSLESLGSGLSIRVGMLPEVVERMIAGLTAEGH 143

Query: 102 RVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD------------------------ 137
           RV+ ++   +    E   +  +    +   I                             
Sbjct: 144 RVSAVWMAEEDGSEEEADENEIGTMCEELGIHYYLWPNEKHFIAEYVPSIPVPFTISGVY 203

Query: 138 -----DSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP----------- 180
                +  ++P    + +   Q  K   P R+   + L      +LP             
Sbjct: 204 TDKPSNHAIVPSLDELPDTYTQYQKKCEPLRQRPAEPLPVPRASTLPTYLPAPTQSLPFV 263

Query: 181 --------AIRLTGPVTPSNIPRFFDYPFQ-----AIDPMFPIGEQNALHILRK-FCKEK 226
                      L  P+   +    F Y  +         +   GE  A   LR  F  E 
Sbjct: 264 IPDDKDGIEAALIAPLLRRDCDNRFLYEVKICKKVPWATILEGGETEANKRLRDLFLPEN 323

Query: 227 ---VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKE----------EFVDLLI 272
              V  Y E++D +   Q +S+LS YLS G L+ R     L +                 
Sbjct: 324 AGLVAGYAEKKDGLLGRQFSSRLSGYLSQGCLTARLVHQALVQYEDGSNDAMAAAEGFGG 383

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFY---------------------------------- 298
               G+ +   EL+WR+F R     +                                  
Sbjct: 384 GENEGSHALRKELLWRDFMRLNGHRFKDVIDHQEGFRGKLGRDIVYKRETSADSEEEEEE 443

Query: 299 ------PSVCMGKPFIPWTEKIEWNKDS------HLLQAWKQGYTGFPIIDAAMRQLNTI 346
                 P++     F P  +  +W+++       + L+ W+ G TG  +IDA+ R+L   
Sbjct: 444 PELPEKPTMQKFTWFSPRADMADWDQEQSPEQTANYLRRWQLGTTGLSLIDASQRELMYT 503

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           G+  NR RM+ ++F  K + +DWR G E++   L+D D+ SN G WQ+AA  GND     
Sbjct: 504 GFTSNRARMVVSNFFAKRMQIDWRCGAEWYEMMLMDYDVYSNWGNWQYAAGVGNDPRGIE 563

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSWLDKNDLSLN 455
           R  NP  Q   +DP+G ++R WLPE+  +   +++  P +       S N
Sbjct: 564 RDLNPVKQAFDYDPKGLYVRAWLPEVARLKELRHLFQPSAAPPSAVTSAN 613


>gi|329120351|ref|ZP_08249019.1| deoxyribodipyrimidine photo-lyase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462692|gb|EGF09015.1| deoxyribodipyrimidine photo-lyase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 456

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 118/460 (25%), Positives = 183/460 (39%), Gaps = 45/460 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+    +LR+  N  L  A         AV+            + RQ +F+  +L ++  
Sbjct: 33  LLHFTRNLRLAANP-LLHAVQYG-IPAAAVYFL------PAHSNPRQMYFLSQTLAELSD 84

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L++ GI     + S  +     +  Y   + +T     R  +    R   + E+ L   
Sbjct: 85  GLAEYGIPLHVFEGSPTEHLNALMARYPTARLITAQHI-RLPDDPSCRVQYVQEEILPLP 143

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V   + D S+  PP  ++            + +   ++  + D         R+   + P
Sbjct: 144 VRRTTLDTSL--PPDLVVYRD--------AWLRKAAKSAEETDSTPDKAAVRRVQQHLPP 193

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLS 250
                       A       GE  A    R F   K+ YY   RD PA +GTSQLS  L 
Sbjct: 194 ELRDAPPPPSVSAQTLPQTGGETAAWTAWRAF-TPKLPYYGLMRDFPAQKGTSQLSAALR 252

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF--- 307
            G+L  R+    ++       +     A  WL+ + + ++ R  M F   +   +     
Sbjct: 253 FGLLPVRRLARTVQ-------VMGGESAEKWLHSVFYGDYCRRRMPFAAGLWAWEDGALV 305

Query: 308 ------IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                           + +     W++G TG P+IDAAMR L+  GWMH RLR + A+F 
Sbjct: 306 EIRPPAAAPAMPALSEEQAAAFDLWRRGRTGVPLIDAAMRLLDGGGWMHPRLRSLCAAFA 365

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           V  L +    GE  F + L D D ++N  GWQ AA+         R+ NP  + +  DP 
Sbjct: 366 VSALGIPQAAGEACFAAALTDYDYSANRVGWQTAAAA--------RMKNPFAESQNLDPG 417

Query: 422 GTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIV 461
           G FIR  LPE+ ++P   IHAPH       L+  YP PIV
Sbjct: 418 GRFIRSHLPEIAHLPDNIIHAPHRAGSGVSLN-GYPAPIV 456


>gi|48716245|dbj|BAD23781.1| putative cryptochrome 2 [Oryza sativa Japonica Group]
          Length = 298

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 117/298 (39%), Gaps = 21/298 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL +A    D  V+ VFI  P    Q         ++  SL  + 
Sbjct: 7   TVVWFRRDLRIDDNPALASAAR--DGAVLPVFIWCPADEGQFYPGRCSRWWLKQSLPHLS 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +SL   G      +  +   ++E L         T+L YN  Y+   + RD  ++K L  
Sbjct: 65  QSLESLGCPLVLIRAES---TLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELSA 121

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             I  +SF+  +L  P  I + +   +  +  + +  ++  + A     P   + + G +
Sbjct: 122 LGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPG-L 180

Query: 189 TPSNIPRFFDYPFQAIDP----------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                    D   ++              +  G +NA  +L +F    +  Y +      
Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS----WLNELIWREFYR 292
              TS LSPYL  G +S R+ +  ++ + +    +  S A      ++  +  RE+ R
Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSR 298


>gi|20336481|gb|AAM19303.1| cryptochrome-2 [Gallus gallus]
          Length = 266

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 8/180 (4%)

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366
            P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL 
Sbjct: 5   NPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 64

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           + W  G   F   LLD D + N G W W  S       +F  + P   G+R DP G +++
Sbjct: 65  ISWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYVK 123

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +LP+L   P++YI+ P +  +      K  + ++YP P+V+H +     + +     +Q
Sbjct: 124 RYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 183


>gi|330683891|gb|EGG95662.1| putative deoxyribodipyrimidine photo-lyase [Staphylococcus
           epidermidis VCU121]
          Length = 226

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/209 (41%), Positives = 122/209 (58%), Gaps = 5/209 (2%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
           E+ A      F    + +Y +  D  +    S L  YL+ G+L  R+  N L E++    
Sbjct: 23  EKLARKAWDDFLNSNIAHYDKLTDDVSQDFVSGLGKYLAYGLLDIREIINDLLEDYE--- 79

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
              +    +++ ++I+REFY  LM  YP     K F      ++W+ +    + WK+G T
Sbjct: 80  -SDEKNYEAFIRDVIFREFYYVLMMQYPETAT-KSFSEKYRNMQWSYNKTHFEVWKKGQT 137

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G+PI+DAAM++LN  G+MHNRLRM+ + FL K+L +DW  GEEYF   L+D D ASN  G
Sbjct: 138 GYPIVDAAMKKLNRTGYMHNRLRMVVSQFLTKNLFIDWTWGEEYFRQYLIDYDNASNVHG 197

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           WQW+ASTG D VPYFR+FNP  Q +RFD 
Sbjct: 198 WQWSASTGTDEVPYFRMFNPIRQSERFDK 226


>gi|302745162|gb|ADL62684.1| cryptochrome 4 [Phreatichthys andruzzii]
          Length = 274

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 117/237 (49%), Gaps = 9/237 (3%)

Query: 194 PRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPA--IQGTSQLSPY 248
           P   D   +   D ++P GE +AL  L K  + + +   + + R +P   +  ++ LSPY
Sbjct: 40  PSLADLGLEVEFDVLWPGGETHALQRLDKHFQSQGWVTSFSKTRTVPNSLLPSSTGLSPY 99

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           LS+G LS R  +++L   +            S   +++WREF+  + +  P+    +   
Sbjct: 100 LSLGCLSVRTFYHQLSSVYAQSK-NHSLPPLSLQGQVLWREFFYTVASSTPNFTKMEG-N 157

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLV 367
           P   +I+W  D   L+ W+   TGFP IDA M QL   GW+H+  R   A FL + DL +
Sbjct: 158 PICLQIQWYHDPEALEKWRTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWI 217

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
            W  G + F   LLD D + N G W W +++      Y RIF P   G+R DPQG +
Sbjct: 218 SWEEGMKVFEELLLDADYSINAGNWMWLSASAFFHK-YTRIFCPVRFGRRTDPQGQY 273


>gi|241701053|ref|XP_002411902.1| DNA photolyase, putative [Ixodes scapularis]
 gi|215504842|gb|EEC14336.1| DNA photolyase, putative [Ixodes scapularis]
          Length = 253

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 9/226 (3%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCW 260
           D ++P GE  AL  L +  + K +   +   +  P   +   + LSPYL  G LS R  +
Sbjct: 23  DAVWPGGETEALARLERHLERKAWVASFGSPKMTPKSLLASQTGLSPYLRFGCLSARLFY 82

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           ++L + +    IK  +   S   +L+WREF+       P+        P   +I W+ ++
Sbjct: 83  HQLADLYRK--IKKSNPPLSLQGQLLWREFFYCAATRNPNFDRMHN-NPICVQIPWDVNA 139

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQ 379
             L  W  G TG+P IDA MRQL   GW+H+  R   A FL + DL + W  G + F   
Sbjct: 140 EALAKWANGQTGYPWIDAIMRQLREEGWIHHVARYAVACFLTRGDLWLSWEEGMKVFDEL 199

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           LLD D + N G W W  S  +    +F ++ P   G++ DP G FI
Sbjct: 200 LLDADWSVNAGSWMW-LSCSSFFQQFFHLYCPVRFGRKADPSGDFI 244


>gi|213613145|ref|ZP_03370971.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 141

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 95/141 (67%), Positives = 112/141 (79%)

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           RQLN  GWMHNRLRMITASFLVKDLL+DWR+GE YFMSQL+DGDLA+NNGGWQWAASTG 
Sbjct: 1   RQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT 60

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPI 460
           D+ PYFRIFNPT Q +RFD  G FIR WLP L ++P + IH P  W +K  + L+YP PI
Sbjct: 61  DAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPRPI 120

Query: 461 VDHKKACHHTLNQYYAAKKQS 481
           V+HK+A   TL+ Y AA+K +
Sbjct: 121 VEHKQARIATLSAYEAARKGA 141


>gi|322817684|gb|EFZ25335.1| DNA photolyase, putative [Trypanosoma cruzi]
          Length = 871

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 107/545 (19%), Positives = 178/545 (32%), Gaps = 106/545 (19%)

Query: 16  NDLRITDNKALYAACHN----SDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64
           ND+R+ DN  L  A           VIAV +     + Q          S  ++ F   S
Sbjct: 228 NDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRARFFLES 287

Query: 65  LLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           L +++  L +   +              E +    ++   T +F   QY  +E      +
Sbjct: 288 LAKLRAKLEEELNVPLLIR----CGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVHDTI 343

Query: 124 EKRLQHRVIC---------------------------------------KSFDDSVLLP- 143
            + ++ R                                           S   + L+  
Sbjct: 344 VESIKRRKWVSRDVASGLKLKTHDAAVSHPYGNCDGDREAVTAAVSPVPHSVWQTTLVHI 403

Query: 144 -----------------PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                               +   +++    Y  +   +     + +L         L  
Sbjct: 404 DDLPVPVAAMAEGERWYHDDVTVASIRPTTPYDRYIARISSLPTRHELLPTAAERSGLAH 463

Query: 187 P-VTPSNIPRFFDYPFQ-----------AIDPMFPIGEQNALHILRKFCKEKV-----YY 229
           P +   +IP      +            A     P GE  A+  +  +           +
Sbjct: 464 PPLYRGSIPTLDQLGYGNQEAFAVEEVIATQSSHPPGEHAAIERVEDWLAGGGVTSLLRH 523

Query: 230 YVEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNEL 285
             E R    +  Q  S++SPYLS G LSPR+ +  L+    + L     +      L  L
Sbjct: 524 GREHRTNVKMYSQRLSRVSPYLSNGSLSPRRFYEMLRCYTTENLRDNFVQMQYREALLRL 583

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMR 341
             R+ Y H M       +  P+ P  E+ +    W  D  ++Q W  G TG P  DAAMR
Sbjct: 584 SRRD-YWHWMGLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMR 642

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L T G++ +  R   A  L +    DWR+G E+     LD D     G + + +    D
Sbjct: 643 ELLTTGFVAHEGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILD 702

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLN 455
                 + +        D  G +++ WLP L+ +P  YIH PH    +        L   
Sbjct: 703 DFGEP-VRSVHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKT 761

Query: 456 YPLPI 460
           YP P+
Sbjct: 762 YPYPL 766


>gi|169609250|ref|XP_001798044.1| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15]
 gi|160701810|gb|EAT85178.2| hypothetical protein SNOG_07712 [Phaeosphaeria nodorum SN15]
          Length = 582

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 105/522 (20%), Positives = 172/522 (32%), Gaps = 144/522 (27%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDA-----------------------------KVIA 39
           + L  LR D+R++DN A +AA   +                                 + 
Sbjct: 7   IVLYILRRDIRLSDNPAFHAAAQQTQRANSRKSSPNGERRGRDDSLTSEHGGAPFTHFLP 66

Query: 40  VFIATPEQWRQHGI-----------------------SARQSHFIYASLLQVQKSLSQK- 75
           V++  P+Q    G                           ++ FI   +  +++ L    
Sbjct: 67  VYVFPPKQIETSGFLASPSDKSPYAEARSQFAKVWRTGPHRAKFIGQGVWGLKQQLENLG 126

Query: 76  -GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134
            G   +                                 ++EV RD              
Sbjct: 127 CGSGLEMRVGM----------------------------VDEVVRD-------------- 144

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194
                  +   S+ +   +     T           + D     V A+R           
Sbjct: 145 ------FINSYSLKDGEDESKPKITGVWMTSDDGTEERD----EVKAVRKVAAENDIPFK 194

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCK-EKVYYYVEQRD-IPAIQGTSQLSPYLSIG 252
            + D  F   D     GE++ L  +    +   +  Y   R+ +  +  +++LS YL+ G
Sbjct: 195 LWADEKFYIDD----GGEEHGLDRIAHLIRSGAMSSYKATRNGMLGLDFSTKLSAYLAQG 250

Query: 253 VLSPRQCWNRLKEEFVDLLIK---------PKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            ++ RQ    +K+                    G  +   EL+WR++ R  M  +     
Sbjct: 251 HITARQVHWAMKDFEEGRGEGKGIAGYGKGENEGTAAVRFELLWRDYMRLCMRKFGHKMF 310

Query: 304 ----------------------GKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
                                      P     +  K+    Q ++ G TG  +IDA+ R
Sbjct: 311 ALYGIQPHRKGQGDEPIYKKRWRMVHKPNGAGDDHKKNMETFQRFRSGRTGVGLIDASNR 370

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L   G+  NR R   ASFL   L +DWRIG E++   L+D D+ASN G WQ+ A  GND
Sbjct: 371 ELFCTGYTSNRARQNVASFLSSHLDIDWRIGAEWYEMLLIDYDVASNWGNWQYVAGVGND 430

Query: 402 SVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
                RIFNP  Q   +D +G +I+ W+PEL  +      AP
Sbjct: 431 PRQ-GRIFNPVKQAFDYDGKGEYIKAWVPELRQLKLTKTVAP 471


>gi|71659265|ref|XP_821356.1| DNA photolyase [Trypanosoma cruzi strain CL Brener]
 gi|70886733|gb|EAN99505.1| DNA photolyase, putative [Trypanosoma cruzi]
          Length = 875

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 106/544 (19%), Positives = 179/544 (32%), Gaps = 104/544 (19%)

Query: 16  NDLRITDNKALYAACHN----SDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64
           ND+R+ DN  L  A           VIAV +     + Q          S  ++ F   S
Sbjct: 232 NDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRARFFLES 291

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +++ ++ ++                E +    ++   T +F   QY  +E      + 
Sbjct: 292 LAKLRATIEEE---LHVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVHDTIV 348

Query: 125 KRLQHRVIC---------------------------------------KSFDDSVLLP-- 143
           + ++ R                                           S   + L+   
Sbjct: 349 ESIKRRKWVSRDVASGLKPKTHDAAVSHPYGNCDGDREAVTAAVSPVPHSVWQTTLVHID 408

Query: 144 ----------------PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                              +   +++    Y  +   +     + +L         L  P
Sbjct: 409 DLPVPVAAMAEGERWYHDDVTVASIRPTAPYDRYIARISSLPTRHELLPTAAERSGLAHP 468

Query: 188 -VTPSNIPRFFDYPFQ-----------AIDPMFPIGEQNALHILRKFCKEKV-----YYY 230
            +   +IP      +            A     P GE  A+  +  +           + 
Sbjct: 469 PLYRGSIPTLDQLGYGNQEAFAVEEVIATQSSHPPGEHAAIERVEDWLAGGGVTSLLRHG 528

Query: 231 VEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELI 286
            E R    +  Q  S++SPYLS G LSPR+ +  L+    + L     +      L  L 
Sbjct: 529 REHRTNVKMYSQRLSRVSPYLSNGSLSPRRFYEMLRRYATENLRDNFVQMQYREALLRLS 588

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            R+ Y H M       +  P+ P  E+ +    W  D  ++Q W  G TG P  DAAMR+
Sbjct: 589 RRD-YWHWMGLRYGPLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRE 647

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L T G++ +  R   A  L +    DWR+G E+     LD D     G + + +    D 
Sbjct: 648 LLTTGFVAHEGRQALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDD 707

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNY 456
                + +        D  G +++ WLP L+ +P  YIH PH    +        L   Y
Sbjct: 708 FGEP-VRSVHWLAHHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTY 766

Query: 457 PLPI 460
           P P+
Sbjct: 767 PYPL 770


>gi|297721439|ref|NP_001173082.1| Os02g0625000 [Oryza sativa Japonica Group]
 gi|255671101|dbj|BAH91811.1| Os02g0625000 [Oryza sativa Japonica Group]
          Length = 334

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 94/157 (59%), Gaps = 6/157 (3%)

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
            D    ++W+QG TG+P++DA MR+L   GW HNR+R+I +SF VK LL+ W  G +YF 
Sbjct: 24  HDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFW 83

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD DL S+  GWQ+ + +  D     R+ NP +QG+++DP G ++R W+PEL  +PT
Sbjct: 84  DVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPT 143

Query: 438 QYIHAPHSWL------DKNDLSLNYPLPIVDHKKACH 468
           ++IH P             +L  NYP PIVD   A  
Sbjct: 144 EWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARE 180


>gi|298162590|gb|ADI59662.1| cryptochrome [Amphiprion melanopus]
          Length = 308

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 126/313 (40%), Gaps = 25/313 (7%)

Query: 95  DSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQM 154
                + ++ +L Y    E     RD  ++K      +  +   S  L     L+  +++
Sbjct: 1   PRLFKEWKINRLSYEYDSEPFGKERDAAIKKLASEAGVEVTVRISHTLY---DLDKIIEL 57

Query: 155 YKVYTPFRKALIQNLV-QADLRSLPVPAI------RLTGPVTPSNIPR-----FFDYPFQ 202
               +P      Q L+ + D   +P  +I      + T P++  +  +       +  F 
Sbjct: 58  NGGQSPLTYKRFQTLISRMDAVEVPAESITAEIMGKCTTPLSEDHDDKFGVPSLEELGFD 117

Query: 203 A---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLS 255
                  ++P GE  AL  L +  + K +    +R            + LSPY   G LS
Sbjct: 118 TEGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYPRFGCLS 177

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
            R  + +L + +  +  K  S   S   +L+WREF+       P     +   P   +I 
Sbjct: 178 CRLFYFKLTDLYRKVK-KNSSPPLSLYGQLLWREFFYTAATNNPCFDKMES-NPICVQIP 235

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEE 374
           W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G +
Sbjct: 236 WDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMK 295

Query: 375 YFMSQLLDGDLAS 387
            F   LLD D + 
Sbjct: 296 VFEELLLDADWSV 308


>gi|116787609|gb|ABK24574.1| unknown [Picea sitchensis]
 gi|224284157|gb|ACN39815.1| unknown [Picea sitchensis]
          Length = 526

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 66/334 (19%), Positives = 123/334 (36%), Gaps = 37/334 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIY 62
              +VW RNDLR+ DN+AL +A   +   V+ V+   P  + +           ++ F+ 
Sbjct: 188 KAAIVWFRNDLRVHDNEALSSANKEA-LSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLL 246

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             +  ++ +L ++G               E L           L+ +++    E+  ++ 
Sbjct: 247 ECVANLRANLRERGSDLVVR----IGRPEEVLVELAKSIGADALYAHQEVSHEEIATEEK 302

Query: 123 LEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVP 180
           ++  L +  V  K F  S L  P  +      M   Y  FR+ + +  V+  ++    + 
Sbjct: 303 IKSSLEEEGVETKFFWGSTLYHPEDLPFKLQDMPSNYGGFRERVQRLSVRQIIKDPEQLK 362

Query: 181 AIRLTGPVTPSNIPRFFDYPF---------QAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
            +   G V P  +P   D             A++     GE  AL  L++F  E      
Sbjct: 363 GLPTRGDVEPGKVPSLLDLGLNPNFGQDGKTAVNASLTGGESEALQRLKRFAVECREQPN 422

Query: 232 E------QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL----------KEEFVDLLIKPK 275
           +         +     + ++SP+L++G LSPR  +  L                     +
Sbjct: 423 KLGKDGSGESLYGANFSCKISPWLAMGCLSPRYMFEELKKSEKISISSSLGKSSGADSGQ 482

Query: 276 SGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIP 309
            G      EL+WR+F+R +   Y S    +   P
Sbjct: 483 GGLNWLKFELLWRDFFRFITKKYGSAKKQQDASP 516


>gi|317969609|ref|ZP_07970999.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
          Length = 480

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 97/399 (24%), Positives = 156/399 (39%), Gaps = 31/399 (7%)

Query: 93  WLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHA 151
            L           +  +   E      RD  + + LQ + I   +     + P +  +  
Sbjct: 2   VLARLAKDSGARHVLAHTDSERLVGRVRDARVNRHLQQQGIELEW-----IEP-AGASGK 55

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPI 210
           LQ Y  +       +   +  + + + VP      PV         D        P+   
Sbjct: 56  LQPYSDWNRQWHGAMAAPLVPEPQRVVVPEQCPDAPVP-----SLKDLGLISDGKPIPKA 110

Query: 211 GEQNALHILRKFCKEKVYY-YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
           G   AL  L +F +      Y  +   P+ + TS LSPYL  GV+SPRQC  RL    + 
Sbjct: 111 GTDAALGRLDRFLEGSDSRTYYWELSYPSAKVTSGLSPYLKFGVVSPRQCLQRLTAAGLR 170

Query: 270 LLIKPKSGAFS----WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQ 324
                            + L W         + P + +   +  + ++   +     L +
Sbjct: 171 AKENADRSRLRSIQQLFSRLRWGCSIHQRFRYLPQLELRSLWSAFDQESALSAQQIELYE 230

Query: 325 AWKQGYTGFPIIDAAMRQLNTIG-WM--HNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           AWK+G TGFPI+DAA   L   G W+  + R R I ASFL     +DWR G  +FM  L+
Sbjct: 231 AWKEGRTGFPIVDAAANCLRGGGGWLELNFRSRAIYASFLSNLCGIDWRYGALHFMRHLI 290

Query: 382 DGDLASNNGGWQWAAS-TGNDSVPYFRIFNPTIQG-KRFDPQGTFIRHWLPELNNVPTQY 439
           DGD   ++  W   A  T      +  I++P      R DP G FIR WLP+L  +    
Sbjct: 291 DGDCPIDHYQWAMQAGATYRGRKAWTPIYHPGQVAVNRCDPHGLFIRRWLPQLERLTNDQ 350

Query: 440 IHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           +  P ++        +YP P++++++A    +      +
Sbjct: 351 LGEPPAFA-------DYPAPVLNYEEARQARMEALSNTR 382


>gi|302765677|ref|XP_002966259.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
 gi|300165679|gb|EFJ32286.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
          Length = 345

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 121/314 (38%), Gaps = 28/314 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64
            +VW RNDLR+ DN+AL AA   S   VI V+   P+ + +           ++ F+   
Sbjct: 22  SIVWFRNDLRVHDNEALAAANKES-LSVIPVYCFDPKDYGKSASGFDKTGPYRAKFLVEC 80

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++ +L ++G            + +E L +         L+ +++    E+  +  + 
Sbjct: 81  VANLRDNLRERGSELVVR----IGNPVEVLSTIAKAVGADGLYAHQEVSSEELGMEDKVT 136

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAI 182
             L+   V  K F  S L     +      M   Y  FR  +    V+A       +  +
Sbjct: 137 SALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAPKQLKGL 196

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKF--CKEKVYYYVEQ 233
              G V   +IP   +     +             GE  AL  L+ F           ++
Sbjct: 197 PSQGDVKAGDIPSLQELGLSPVSAAGQHKRNRMIGGEVEALKRLKSFSLVSPPPSKGGKE 256

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD-------LLIKPKSGAFSWLNELI 286
             I     +S++SP+L++G LSPR+ +  LK+                 SG    + EL+
Sbjct: 257 NSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSVVASTSGDSGMQWLVFELL 316

Query: 287 WREFYRHLMAFYPS 300
           WR+F+R +   + +
Sbjct: 317 WRDFFRFVTKKHGA 330


>gi|302793095|ref|XP_002978313.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
 gi|300154334|gb|EFJ20970.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
          Length = 345

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 121/314 (38%), Gaps = 28/314 (8%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----HGISARQSHFIYAS 64
            +VW RNDLR+ DN+AL AA   S   VI V+   P+ + +           ++ F+   
Sbjct: 22  SIVWFRNDLRVHDNEALAAANKES-LSVIPVYCFDPKDYGKSASGFDKTGPYRAKFLVEC 80

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++ +L ++G            + +E L +         L+ +++    E+  +  + 
Sbjct: 81  VANLRDNLRERGSELVVR----IGNPVEVLSTIAKAVGADGLYAHQEVSSEELGMEDKVT 136

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAI 182
             L+   V  K F  S L     +      M   Y  FR  +    V+A       +  +
Sbjct: 137 SALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAPKQLKGL 196

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKF--CKEKVYYYVEQ 233
              G V   +IP   +     +             GE  AL  L+ F           ++
Sbjct: 197 PSQGDVKAGDIPSLQELGLSPVSAAGQHKRNRMIGGEVEALKRLKSFSLVSPPPSKGGKE 256

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD-------LLIKPKSGAFSWLNELI 286
             I     +S++SP+L++G LSPR+ +  LK+                 SG    + EL+
Sbjct: 257 NSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSLVASTSGDSGMQWLVFELL 316

Query: 287 WREFYRHLMAFYPS 300
           WR+F+R +   + +
Sbjct: 317 WRDFFRFVTKKHGA 330


>gi|213158208|ref|YP_002320259.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057]
 gi|213057368|gb|ACJ42270.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057]
          Length = 136

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 81/136 (59%), Positives = 101/136 (74%), Gaps = 2/136 (1%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQL   GWMHNR+RMITA FL K+LL+DWRIGE++FM  L+DGDLA+NNGGWQW ASTG
Sbjct: 1   MRQLLQTGWMHNRVRMITAMFLCKNLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTG 60

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
            D+VPYFRIFNP  Q K+FDP+G +IR W+ EL ++  + IH P+S   K+DL LNY  P
Sbjct: 61  TDAVPYFRIFNPIAQSKKFDPEGEYIRQWIKELAHLDNKTIHEPYS--SKSDLGLNYSKP 118

Query: 460 IVDHKKACHHTLNQYY 475
           IVD K+     +  + 
Sbjct: 119 IVDLKETRLKAIETFK 134


>gi|308811873|ref|XP_003083244.1| Deoxyribodipyrimidine photolyase/cryptochrome (ISS) [Ostreococcus
           tauri]
 gi|116055123|emb|CAL57519.1| Deoxyribodipyrimidine photolyase/cryptochrome (ISS) [Ostreococcus
           tauri]
          Length = 489

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 87/296 (29%), Positives = 131/296 (44%), Gaps = 22/296 (7%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQC 259
            I   + I E  A+    +F    +  +  +    D  A    S+LSPYL  G++SPR  
Sbjct: 60  GIRADWDISEGGAVETWSQFTAVGLDRFEAEHGRADPEAGVTVSRLSPYLRFGMISPRTV 119

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW--- 316
           ++ L      +    K+ + ++ + L  RE     +  +P +          E   W   
Sbjct: 120 YHDL------VKKDGKNISKTFWHRLYRRELAYWQLHHWPDLPKT-SVRSHYENRAWLSG 172

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
           ++    L+ W++G TGFP++D  MR+L   GWMH   RMITA+FLV  L V W  G ++F
Sbjct: 173 DEADEALRRWQRGETGFPVVDCGMRRLWRTGWMHQTERMITATFLVDYLGVHWTRGADWF 232

Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           M  L+D D A N+  WQ A  +G D   +F     P    +  DP G  I  W+PEL  +
Sbjct: 233 MRTLVDADEAINSMMWQNAGKSGLDQWDFFEGTLAPDGSARAHDPHGDAIARWIPELAAL 292

Query: 436 PTQYI-HAPHSWLDKN------DLSLNYPLP-IVDHKKACHHTLNQYYAAKKQSLL 483
           P  Y+ H P             +L   YP   IVD  +A    L+     +   L+
Sbjct: 293 PRGYLRHRPWEASKATLAECDVELGSTYPRRMIVDLDRARQRMLDDVTTIRHAELV 348


>gi|255564190|ref|XP_002523092.1| DNA photolyase, putative [Ricinus communis]
 gi|223537654|gb|EEF39277.1| DNA photolyase, putative [Ricinus communis]
          Length = 458

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 128/316 (40%), Gaps = 32/316 (10%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64
            +VW RNDLR+ DN+ L +A + S   V+ V+   P ++ +           ++ F+  S
Sbjct: 128 SIVWFRNDLRVHDNECLNSANNES-MSVLPVYCFDPREYGKSSSGFDKTGPYRASFLIES 186

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++K+L  +G                 L           ++ +++   +EV+ +  +E
Sbjct: 187 VTDLRKNLQDRGSDLVVR----VGKPETVLVELAKAIGADAVYAHKEVSHDEVKAEDKIE 242

Query: 125 KRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
             ++   V  K F  S L     +      M   Y  FR+ +    V+  + +L     +
Sbjct: 243 AAMKDEGVEVKYFWGSTLYHVDDLPFKLEDMPSNYGGFREKVHGLEVRKTIAALDQLKGK 302

Query: 184 LT-GPVTPSNIPRFFDYPFQAIDPMFP-------IGEQNALHILRKFCKEKVYYYVEQRD 235
            + G V P  IP   D          P        GE  AL  L+KF  E      +   
Sbjct: 303 PSRGDVEPGEIPSLLDLGLNPTQGGKPAATASMVGGETEALQRLKKFAAECQAQPPKGGS 362

Query: 236 IPAIQG---TSQLSPYLSIGVLSPRQCWNRLKE----------EFVDLLIKPKSGAFSWL 282
             +I G   + ++SP+L++G +SPR  ++ LK+          +  D    P +G    +
Sbjct: 363 QDSIYGANFSCKISPWLTMGCISPRSMFDELKKTATRTISAASKGNDGGSPPDTGMNWLM 422

Query: 283 NELIWREFYRHLMAFY 298
            EL+WR+F+R +   Y
Sbjct: 423 FELLWRDFFRFITKKY 438


>gi|125543822|gb|EAY89961.1| hypothetical protein OsI_11521 [Oryza sativa Indica Group]
          Length = 451

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 121/331 (36%), Gaps = 39/331 (11%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISAR 56
            A       LVW R DLR+ D++ L+AA   + + ++ VF+  P  + +           
Sbjct: 104 PAAAGRRRTLVWFRADLRLHDHEPLHAAV-GASSSLLPVFVFDPRDFGKSPSGFDRTGPY 162

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           ++ F+  S+  +++ L  +G                 +           +F + +   +E
Sbjct: 163 RAGFLLDSVADLRRGLRARGGDLVVR----VGRPEVVIPELARAAGAEAVFAHGEVSRDE 218

Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL- 174
            R ++ + K + +  +  K F  S L     +      M   Y  FR+A+    V+  L 
Sbjct: 219 CRAEEKVSKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLD 278

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQ-----------AIDPMFPIGEQNALHILRKFC 223
               V  + +   + P  IP   +               A+      GE  AL  L+KF 
Sbjct: 279 APEEVKCVPMKNVLEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFA 338

Query: 224 KEKV-----YYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275
            E             RD       + ++SP+L+ G LSPR  +  LK+     +      
Sbjct: 339 SECCMQPNKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTP 398

Query: 276 --------SGAFSWLNELIWREFYRHLMAFY 298
                   +G    + EL+WR+F+R +   Y
Sbjct: 399 KNGDGTSDAGTNWLMFELLWRDFFRFITKKY 429


>gi|224128470|ref|XP_002320340.1| predicted protein [Populus trichocarpa]
 gi|222861113|gb|EEE98655.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 128/321 (39%), Gaps = 38/321 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           +VW RNDLR+ DN+ L +A ++S   V+ V+   P  + +           +++F+  S+
Sbjct: 88  IVWFRNDLRVHDNECLNSASNDS-MSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 146

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++K+L  +G                 L           ++ +R+   +EV+ +  +E+
Sbjct: 147 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAHREVSHDEVKAEDKIEE 202

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183
            ++   V  K F  S L     +      M   Y  F++ +    ++  + +L  +  + 
Sbjct: 203 VMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQVLEIRKTVETLDELKGLP 262

Query: 184 LTGPVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRD- 235
             G V P +IP   D             +     GE  AL  L+KF  E      +  + 
Sbjct: 263 SRGDVEPGDIPNLLDLGLNPAQDGKATANASMVGGEAEALQRLQKFAAECQAQPPKGTNG 322

Query: 236 ----IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD--------------LLIKPKSG 277
               I     + ++SP+L++G +SPR  ++ LK+                      P +G
Sbjct: 323 SHDSIYGANFSCKISPWLTVGCISPRSMFDELKKTAARTISGASNCGGGGGGGSGSPDTG 382

Query: 278 AFSWLNELIWREFYRHLMAFY 298
               + EL+WR+F+R +   Y
Sbjct: 383 MNWLMFELLWRDFFRFITKKY 403


>gi|115452953|ref|NP_001050077.1| Os03g0343400 [Oryza sativa Japonica Group]
 gi|108708083|gb|ABF95878.1| photolyase/blue-light receptor PHR2, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113548548|dbj|BAF11991.1| Os03g0343400 [Oryza sativa Japonica Group]
 gi|125586213|gb|EAZ26877.1| hypothetical protein OsJ_10801 [Oryza sativa Japonica Group]
          Length = 459

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 121/331 (36%), Gaps = 39/331 (11%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISAR 56
            A       LVW R DLR+ D++ L+AA   + + ++ VF+  P  + +           
Sbjct: 112 PAAAGRRRTLVWFRADLRLHDHEPLHAAV-GASSSLLPVFVFDPRDFGKSPSGFDRTGPY 170

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           ++ F+  S+  +++ L  +G                 +           +F + +   +E
Sbjct: 171 RAGFLLDSVADLRRGLRARGGDLVVR----VGRPEVVIPELARAAGAEAVFAHGEVSRDE 226

Query: 117 VRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL- 174
            R ++ + K + +  +  K F  S L     +      M   Y  FR+A+    V+  L 
Sbjct: 227 CRAEEKVSKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLD 286

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQ-----------AIDPMFPIGEQNALHILRKFC 223
               V  + +   + P  IP   +               A+      GE  AL  L+KF 
Sbjct: 287 APEEVKCVPMKNVLEPGEIPTLAELGLTAPPAMAHGSKAAVGSTLIGGEAEALERLKKFA 346

Query: 224 KEKV-----YYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275
            E             RD       + ++SP+L+ G LSPR  +  LK+     +      
Sbjct: 347 SECCMQPNKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTP 406

Query: 276 --------SGAFSWLNELIWREFYRHLMAFY 298
                   +G    + EL+WR+F+R +   Y
Sbjct: 407 KNGDGTSDAGTNWLMFELLWRDFFRFITKKY 437


>gi|212275814|ref|NP_001131008.1| hypothetical protein LOC100192113 [Zea mays]
 gi|194690696|gb|ACF79432.1| unknown [Zea mays]
 gi|194701496|gb|ACF84832.1| unknown [Zea mays]
          Length = 446

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 130/334 (38%), Gaps = 39/334 (11%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISAR 56
            A       LVW R DLR+ D++  +AA   + + ++ VF+  P  + +           
Sbjct: 101 PAAAGRRRTLVWFRADLRLHDHEPFHAAA-GASSSLLPVFVFDPRDFGKSPSGFDRTGPY 159

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +++F+  S+  +++SL  +G                 +           ++ + +   +E
Sbjct: 160 RANFLLDSVADLRRSLRARGGDLVVR----VGRPEVVIPELARAAGAEAVYAHGEVSRDE 215

Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           VR ++ ++K ++   I  K F  S L     +      M   Y  FR+A+    V+  L 
Sbjct: 216 VRAEERVQKAVEKEGINVKYFWGSTLYHVEDLPFRLEDMPSNYGGFREAVKGLEVRKVLE 275

Query: 176 SL-PVPAIRLTGPVTPSNIPRFFDYPF-----------QAIDPMFPIGEQNALHILRKFC 223
           +   V  + +   + P +IP   +               A+      GE  AL  L+KF 
Sbjct: 276 APEEVKCVPMKNVLEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALERLKKFA 335

Query: 224 KE------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275
            E      KV     Q  I     + ++SP+L+ G LSPR  +  LK+     +      
Sbjct: 336 AECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIPFGSTP 395

Query: 276 --------SGAFSWLNELIWREFYRHLMAFYPSV 301
                   +G    + EL+WR+F+R +   Y SV
Sbjct: 396 KNNDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 429


>gi|307105812|gb|EFN54060.1| hypothetical protein CHLNCDRAFT_136148 [Chlorella variabilis]
          Length = 661

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 112/619 (18%), Positives = 185/619 (29%), Gaps = 165/619 (26%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSD--------AKVIAVFIATPEQWRQ--- 50
              T     L+W RNDLR+ D++ L++A  +            ++  +     +      
Sbjct: 29  SGPTRKPAALIWFRNDLRLADHEPLHSAAADLQHCLSQGQSPLLLPFYCLDERELAPRAG 88

Query: 51  ----------HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ 100
                       +   +   +  +   ++ +L + G      Q    +  +  L +    
Sbjct: 89  ELPQEGGLDIPQLGPHRLRLLLEACASLRAALRRLGSDLLAAQGRP-EALVGRLVALAAA 147

Query: 101 QRVTKLFYNRQYEINEVRRD-------KLLEKRLQHRVIC--KSFDDSVLLPPGSILNH- 150
              + +  +     +    D              +H + C    +    L  P  +  H 
Sbjct: 148 AGSSSMALHHHMSPDAASADLEDAVAAAFEAAAARHGLPCSVHRYWGCTLYHPDDLPFHL 207

Query: 151 -------ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR-------- 195
                  +            A  Q   Q    S   PA    G + P             
Sbjct: 208 WACGSASSGGRPGAAAVAGPAAEQQQQQRGQCSRVNPAAAEAGLLGPLPTDLASVYSAAG 267

Query: 196 ---------FFDYPFQAIDPMFPI---------------GEQNALHILRKFC-------- 223
                    +          + P                GE+ A+  LR +         
Sbjct: 268 GAATAALACWEALGAVRCAALAPACSGRHDARSALPFGMGEEQAVQRLRYYLGLEESDGH 327

Query: 224 -------KEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV------- 268
                  +  +  Y E R  P  +  +++LS +LS+G LSPR     +    V       
Sbjct: 328 SVRSVDQEAPIATYRETRMQPFGVDSSAKLSAFLSLGCLSPRTAHAEVARLAVLEQQQQQ 387

Query: 269 ------------------------------DLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
                                             +        L  L  R+F+       
Sbjct: 388 QQRRRRGQASSGDAAATAAVAAAAGEAAAAWREPQAGDTWRWLLMHLAIRDFFVFTAVKE 447

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
               +  P       +EW +D  L + W QG TG P +DA MR+L   G+M NR R    
Sbjct: 448 GD-ALEAPGGIRGRAVEWRRDDELFRRWAQGQTGLPFVDACMRELGATGFMSNRGRQ--- 503

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
                +L +DWR+G  YF S L D + A N G W + A TG+D  P  R F    QG+R+
Sbjct: 504 ----NELCLDWRLGLRYFESCLADHEWALNAGNWAYCAGTGSD--PRDRRFKTVSQGERY 557

Query: 419 DPQGTFIRHWLPELNNVPTQYIH--------------------APHSWLDKND------- 451
           DP+   I+ W+P+L  +    +                      P +   +         
Sbjct: 558 DPEARLIQAWVPQLAALRPAQLAHQPWAAPPAALAAAGVRLGCEPQAATAEAGTERQEQQ 617

Query: 452 ----LSLNYPLPIVDHKKA 466
               L   YPLP+VD    
Sbjct: 618 KQQQLGGWYPLPVVDPASQ 636


>gi|160335010|gb|ABX24913.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335012|gb|ABX24914.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335016|gb|ABX24916.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335018|gb|ABX24917.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335020|gb|ABX24918.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335022|gb|ABX24919.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335024|gb|ABX24920.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335026|gb|ABX24921.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335028|gb|ABX24922.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335030|gb|ABX24923.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335032|gb|ABX24924.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335034|gb|ABX24925.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335036|gb|ABX24926.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335038|gb|ABX24927.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335040|gb|ABX24928.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335042|gb|ABX24929.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335044|gb|ABX24930.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335046|gb|ABX24931.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335048|gb|ABX24932.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335050|gb|ABX24933.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335052|gb|ABX24934.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335056|gb|ABX24936.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335058|gb|ABX24937.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335060|gb|ABX24938.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335062|gb|ABX24939.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335064|gb|ABX24940.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335066|gb|ABX24941.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335070|gb|ABX24943.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335072|gb|ABX24944.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335074|gb|ABX24945.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335076|gb|ABX24946.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335078|gb|ABX24947.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335080|gb|ABX24948.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335082|gb|ABX24949.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335084|gb|ABX24950.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335086|gb|ABX24951.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335088|gb|ABX24952.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335090|gb|ABX24953.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335092|gb|ABX24954.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335094|gb|ABX24955.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335096|gb|ABX24956.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335098|gb|ABX24957.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335100|gb|ABX24958.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335102|gb|ABX24959.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335104|gb|ABX24960.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335106|gb|ABX24961.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335108|gb|ABX24962.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335110|gb|ABX24963.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335112|gb|ABX24964.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335114|gb|ABX24965.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335116|gb|ABX24966.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335118|gb|ABX24967.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335120|gb|ABX24968.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335122|gb|ABX24969.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335124|gb|ABX24970.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335126|gb|ABX24971.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335128|gb|ABX24972.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335130|gb|ABX24973.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335132|gb|ABX24974.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335134|gb|ABX24975.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335136|gb|ABX24976.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335138|gb|ABX24977.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335140|gb|ABX24978.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335142|gb|ABX24979.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335144|gb|ABX24980.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335146|gb|ABX24981.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335148|gb|ABX24982.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335150|gb|ABX24983.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335154|gb|ABX24985.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335156|gb|ABX24986.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335158|gb|ABX24987.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335160|gb|ABX24988.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335162|gb|ABX24989.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335164|gb|ABX24990.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335166|gb|ABX24991.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335168|gb|ABX24992.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335170|gb|ABX24993.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335172|gb|ABX24994.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335174|gb|ABX24995.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335176|gb|ABX24996.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335178|gb|ABX24997.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335180|gb|ABX24998.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335182|gb|ABX24999.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335184|gb|ABX25000.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335186|gb|ABX25001.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335188|gb|ABX25002.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335190|gb|ABX25003.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047496|gb|ACX54507.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047498|gb|ACX54508.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047500|gb|ACX54509.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047502|gb|ACX54510.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047504|gb|ACX54511.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047506|gb|ACX54512.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|261047508|gb|ACX54513.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 209

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 115/209 (55%), Gaps = 7/209 (3%)

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
             +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW
Sbjct: 2   ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           +QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL 
Sbjct: 61  RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH P + 
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180

Query: 447 LDKN------DLSLNYPLPIVDHKKACHH 469
            +        +L  NYP PIV   +A   
Sbjct: 181 PESVLQAAGIELGSNYPRPIVGLDEAKAR 209


>gi|195651415|gb|ACG45175.1| photolyase/blue-light receptor PHR2 [Zea mays]
          Length = 446

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 130/334 (38%), Gaps = 39/334 (11%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISAR 56
            A       LVW R DLR+ D++  +AA   + + ++ VF+  P  + +           
Sbjct: 101 PAAAGRRRTLVWFRADLRLHDHEPFHAAA-GASSSLLPVFVFDPRDFGKSPSGFDRTGPY 159

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +++F+  S+  +++SL  +G                 +           ++ + +   +E
Sbjct: 160 RANFLLDSVADLRRSLRARGGDLVVRVGMPEV----VIPELARAAGAEAVYAHGEVSRDE 215

Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           VR ++ ++K ++   I  K F  S L     +      M   Y  FR+A+    V+  L 
Sbjct: 216 VRAEERVQKAVEKEGINVKYFWGSTLYHVEDLPFRLEDMPSNYGGFREAVKGLEVRKVLE 275

Query: 176 SL-PVPAIRLTGPVTPSNIPRFFDYPF-----------QAIDPMFPIGEQNALHILRKFC 223
           +   V  + +   + P +IP   +               A+      GE  AL  L+KF 
Sbjct: 276 APEEVKCVPMKNVLEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALERLKKFA 335

Query: 224 KE------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275
            E      KV     Q  I     + ++SP+L+ G LSPR  +  LK+     +      
Sbjct: 336 AECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIPFGSTP 395

Query: 276 --------SGAFSWLNELIWREFYRHLMAFYPSV 301
                   +G    + EL+WR+F+R +   Y SV
Sbjct: 396 KNNDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 429


>gi|328470041|gb|EGF40952.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
          Length = 338

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 87/318 (27%), Positives = 135/318 (42%), Gaps = 12/318 (3%)

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA 172
             +E      L+    H VI +    S L     +      + + +T F K +    +  
Sbjct: 3   GSDEQSILHKLQDEYPHLVIVQHAVRS-LFDESKLPFTLPDLPETFTQFGKCVEGIDIAH 61

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNAL-HILRKFCKEKVYYYV 231
            + +             P+     FD        +F  GE + L H  R F       Y 
Sbjct: 62  PIDAPSRLPPMPKDAQLPTLSSSCFDE-----SALFSGGEWSGLAHCRRYFSSGLASSYK 116

Query: 232 EQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           E R+ +  +  +++ SP+L++G +SPR  +  LK+          +    +  EL+WRE+
Sbjct: 117 ETRNGLDGMAYSTKFSPWLALGCVSPRMIYAMLKQYEQTQGANDSTNWIYF--ELLWREY 174

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +      Y         I     +  +  +H  Q WK G T + I++A M QLN  G+M 
Sbjct: 175 FYWYARCYQQRLFRFGGIRNQPPLT-SFYAHRFQQWKNGTTPYLIVNACMHQLNHTGYMS 233

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           NR R + AS LV +L +DWR G  +F +QL+D D+ SN G WQ+ A  G D     R FN
Sbjct: 234 NRGRQLVASCLVHELGLDWRYGAAHFETQLIDYDVGSNWGNWQYLAGVGADPRG-SRQFN 292

Query: 411 PTIQGKRFDPQGTFIRHW 428
              Q + +DP   FI  W
Sbjct: 293 LEKQTQMYDPNHEFIERW 310


>gi|160335152|gb|ABX24984.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 209

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/209 (35%), Positives = 115/209 (55%), Gaps = 7/209 (3%)

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
             +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW
Sbjct: 2   ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           +QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL 
Sbjct: 61  RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH P + 
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPXFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180

Query: 447 LDKN------DLSLNYPLPIVDHKKACHH 469
            +        +L  NYP PIV   +A   
Sbjct: 181 PESVLQAAGIELGSNYPRPIVGLDEAKAR 209


>gi|160335054|gb|ABX24935.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 206

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 7/206 (3%)

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
             +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW
Sbjct: 2   ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           +QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL 
Sbjct: 61  RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH P + 
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180

Query: 447 LDKN------DLSLNYPLPIVDHKKA 466
            +        +L  NYP PIV   +A
Sbjct: 181 PESVLQAAGIELGSNYPRPIVGLDEA 206


>gi|242040969|ref|XP_002467879.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
 gi|241921733|gb|EER94877.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
          Length = 447

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/334 (20%), Positives = 129/334 (38%), Gaps = 39/334 (11%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISAR 56
            A       LVW R DLR+ D++  +AA   + + ++ VF+  P  + +           
Sbjct: 102 PAAAGRRRTLVWFRADLRLHDHEPFHAAA-GASSSLLPVFVFDPRDFGKSPSGFDRTGPY 160

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +++F+  S+  +++SL  +G                 +           ++ + +   +E
Sbjct: 161 RANFLLDSVADLRRSLRARGGDLVVR----VGRPEVVIPELARAAGAEAVYAHGEVSRDE 216

Query: 117 VRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           VR ++ ++K ++   I  K F  S L     +  H   M   Y  FR+A+    V+  L 
Sbjct: 217 VRAEERVQKAVEKEGINVKYFWGSTLYHVEDLPFHLEDMPSNYGGFREAVKGLEVRKVLE 276

Query: 176 SL-PVPAIRLTGPVTPSNIPRFFDYPF-----------QAIDPMFPIGEQNALHILRKF- 222
           +   V  + +   + P +IP   +               A+      GE  AL  L+KF 
Sbjct: 277 APEEVKCVPMKNVLEPGDIPTLAELGLTAPPAMAQDSKPAVGSTLIGGETEALERLKKFA 336

Query: 223 ----CKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-- 275
                +         +D       + ++SP+L+ G LSPR  +  LK+     +      
Sbjct: 337 VECSMQPNKADKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATRAIPFGSTP 396

Query: 276 --------SGAFSWLNELIWREFYRHLMAFYPSV 301
                   +G    + EL+WR+F+R +   Y SV
Sbjct: 397 KNNDGTSDAGTNWLMFELLWRDFFRFITKKYSSV 430


>gi|225437398|ref|XP_002270248.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 454

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 125/325 (38%), Gaps = 36/325 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           +VW RNDLR+ DN+ L +A + S   ++ V+   P  + +           ++ F+  S+
Sbjct: 121 IVWFRNDLRVHDNECLNSASNES-MSMLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 179

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++++L ++G                 L           ++ +R+   +EV+ ++ +E 
Sbjct: 180 SDLRQNLQKRGSDLVVR----IGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKIEA 235

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183
            ++   V  K F  S L     +     QM   Y  F++ +    ++  + +L  +  + 
Sbjct: 236 AMKEEGVELKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKGLEIRKTIATLDQLRGLP 295

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKVY---Y 229
             G V    IP   D        +              GE  AL  L+KF  E       
Sbjct: 296 ARGDVEAGEIPSLLDLGLSPSATLPQNGMSTANGSLVGGETEALQRLKKFAAECQAQPPK 355

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS----------GAF 279
                 I     + ++SP+L++G LSPR  ++ +K+     +    S          G  
Sbjct: 356 GAANDSIYGANFSCKISPWLAMGCLSPRSMFDEIKKSASRTISASTSKDGGSGQSDTGMN 415

Query: 280 SWLNELIWREFYRHLMAFYPSVCMG 304
             + EL+WR+F+R +   Y S    
Sbjct: 416 WLMFELMWRDFFRFITKKYSSATKQ 440


>gi|118484811|gb|ABK94273.1| unknown [Populus trichocarpa]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 125/316 (39%), Gaps = 33/316 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           +VW RNDLR+ DN+ L +A +N    V+ V+   P  + +           +++F+  S+
Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 185

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++K+L  +G                 L           ++ +R+   +EV+ ++ +E+
Sbjct: 186 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAHREVSHDEVKAEEKIEE 241

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183
            ++   V  K F  S L     +      M   Y  F++ +    ++  + +L  +  + 
Sbjct: 242 LMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQLKGLP 301

Query: 184 LTGPVTPSNIPRFFDYPFQ-------AIDPMFPIGEQNALHILRKFCKEKVYYYVE---Q 233
             G V P +IP   D           A +     GE  AL  L KF  E      +    
Sbjct: 302 SRGDVEPGDIPNLLDLGLNPAQDGKAAANASMVGGETEALQRLNKFAAECQAQPPKGGSH 361

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF-----------SWL 282
             I     + ++SP+L++G +S R  ++ LK+     +    +                +
Sbjct: 362 ESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTVSAASNHNSGGSSSPGAGMNWLM 421

Query: 283 NELIWREFYRHLMAFY 298
            EL+WR+F+R +   Y
Sbjct: 422 FELMWRDFFRFITKKY 437


>gi|326493834|dbj|BAJ85379.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 448

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 123/323 (38%), Gaps = 39/323 (12%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64
            LVW R DLR+ D++ L+AA   + + ++ VF+  P  + +           ++ F+  S
Sbjct: 109 TLVWFRADLRLHDHEPLHAAV-GASSSLLPVFVFDPRDFGKSPSGFDRTGPYRASFLLDS 167

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  +++SL  +G                 +           ++ + +   +E R ++ + 
Sbjct: 168 VADLRRSLRARGGDLVVR----VGRPEVVIPELARAAGAEAVYAHGEVSRDECRTEEKVS 223

Query: 125 KRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAI 182
           K + +  V  K F  S L     +      M   Y  FR+A+    V+  L     V  +
Sbjct: 224 KAIEKEGVEVKYFWGSTLYHLDDLPFRLNDMPSSYGGFREAVKGLEVRKVLDAPEEVKCV 283

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKV---- 227
            +   + P +IP   +    A   M              GE  AL  L+KF  E      
Sbjct: 284 PMKNVLEPGDIPTLGELGLSAPPAMAQDSKSAAGSNLIGGEAEALERLKKFAAECCMQPN 343

Query: 228 --YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK---------- 275
                  Q  I     + ++SP+L+ G LSPR  +  LK+  +  +              
Sbjct: 344 KAVKDSTQNSIYGANFSCKISPWLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGDGTSD 403

Query: 276 SGAFSWLNELIWREFYRHLMAFY 298
           +G    + EL+WR+F+R +   Y
Sbjct: 404 AGTNWLMFELLWRDFFRFVTKKY 426


>gi|332141438|ref|YP_004427176.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551460|gb|AEA98178.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 273

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 76/277 (27%), Positives = 121/277 (43%), Gaps = 8/277 (2%)

Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNA 215
           ++   R+ + ++     +            P          +       P  F  GE  A
Sbjct: 1   MFQSVRRKVEKHCTPLPVLERIAQLPDGFMPNIDKQYILDIELSLPKPSPSSFIGGESAA 60

Query: 216 LHILRKFCKEKVY--YYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
           L+ L  +  +      Y E R+ +   + +++LS +L+ G LS R+   +++    +  I
Sbjct: 61  LNHLETYLFDWKAAATYKETRNTLDTWKDSTKLSAWLANGSLSAREVIRQVQR--FEQTI 118

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
           +     +    EL+WREF+  L   Y +       I   +      D      W +G TG
Sbjct: 119 EKNDSTYWVYFELLWREFFHWLQCKYGAKWFRFSGIQGRKPTTC-HDPETFSRWCKGETG 177

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           + I+DA MRQL   G+M NR R + AS  V +L  DWR G  +F  QL+D D+ SN G W
Sbjct: 178 YRIVDACMRQLAETGYMSNRGRQLVASCFVHELRQDWRYGAAWFEHQLIDYDVGSNWGNW 237

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
            + A  G+D   + R FN   Q + +DP G F + WL
Sbjct: 238 LYLAGVGSDPRGH-RQFNLQKQTEIYDPDGRFRKAWL 273


>gi|255027720|ref|ZP_05299706.1| hypothetical protein LmonocytFSL_17612 [Listeria monocytogenes FSL
           J2-003]
          Length = 282

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 121/294 (41%), Gaps = 20/294 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR++DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVSDNKALYHACKEDD--LLLLFQVNPAQFNT---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++    K  + Q      F + +E L           K+++NR        RD+  +   
Sbjct: 57  KQE-VDKTALLQIM----FGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFF 111

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             + +  ++F DS L     +     + YK++TP+ K   + + +   +           
Sbjct: 112 DEQEIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKADNIRKE 171

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
            + P    +F +       P+   GE+ A   L  F K  V  Y + RD P +  TS LS
Sbjct: 172 NLFPKYEEQFAEMTCDL--PILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
            YL  G +S R  W  L+E       +   G   +  EL WR+FY  +   +P+
Sbjct: 230 RYLRTGEISVRTIWQALQE------NEATEGRAIFEKELCWRDFYNMIYVSFPN 277


>gi|289622017|emb|CBI51195.1| putative cryptochrome [Sordaria macrospora]
          Length = 530

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/280 (25%), Positives = 117/280 (41%), Gaps = 37/280 (13%)

Query: 193 IPRFFDYPFQAIDPM-FPIGEQNALHILRKFC-KEKVYYYVEQRD-IPAIQGTSQLSPYL 249
           +    D+P +A     F  GE +A   +        +  Y + R+ +   + +++LS YL
Sbjct: 30  LKNLPDFPKKAESSHPFRGGETSAHKRIDDLIMSGGMKRYKDTRNGLLGPEFSTKLSAYL 89

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIK----------PKSGAFSWLNELIWREFYRHLMAFYP 299
           + G ++ RQ  + L         +             G  +   EL+WR++ R     Y 
Sbjct: 90  AQGCVTARQIHHALVAYEDGSDTRYQGADGFGEGDNQGTETVRIELLWRDYMRLCHQKYG 149

Query: 300 SVCM--------GKPFIPWTEKIEWNKD----------------SHLLQAWKQGYTGFPI 335
                          +    +K  W                   + +L  +  G TG  +
Sbjct: 150 DKLFRIEGFNGKHTDYEGEDKKHGWKTANTSIALPGQDPTPEKVADILARFNAGTTGMGL 209

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           IDA+ R+L   G+  NR R   ASFL K + +DWR G E++   L+D D++SN   WQ+ 
Sbjct: 210 IDASQRELLHTGYTSNRARQNVASFLAKHMEIDWRYGAEWYEMLLVDYDVSSNWANWQYV 269

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
           A  GND     RIFNP  Q   +D  G ++R W+PE+ + 
Sbjct: 270 AGVGNDPRGAARIFNPVKQAFDYDKDGVYVRAWVPEVASF 309


>gi|327342156|gb|AEA50865.1| cry2-2 [Populus tremula]
          Length = 234

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 10/224 (4%)

Query: 196 FFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
             D   ++ + +    +  G  NA   L +F ++ +  YVE R       TS LSPYL  
Sbjct: 12  LEDEAEKSSNSLLGRGWSPGWSNADKALTEFAEQHLIDYVESRLKVGT-STSLLSPYLHF 70

Query: 252 GVLSPRQCWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           G LS R+ +  ++ +      +  +  K     +L  +  RE+ R+L   +P     +  
Sbjct: 71  GELSVRKVFQCVQLKQLLWAKEENLMGKESVTLFLRSIGLREYSRYLCFNFP-FTHERSL 129

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
           +   +   WN +    +AW+QG TG+P++DA MR+L   GW+HN++R+I +SF VK LL+
Sbjct: 130 LSNLKYFPWNDNQVHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSSFAVKVLLL 189

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
            WR G +YF   LLD DL S+  GWQ+ + +  D+    R+ NP
Sbjct: 190 PWRWGMKYFWDTLLDADLESDILGWQYISGSLPDAHELERLDNP 233


>gi|297824863|ref|XP_002880314.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
 gi|297326153|gb|EFH56573.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
          Length = 448

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 120/313 (38%), Gaps = 32/313 (10%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQ 67
           W RNDLR+ DN+ L +A       V+ V+   P  + +           ++ F+  S+ +
Sbjct: 121 WFRNDLRVHDNECLNSANDEC-VSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSE 179

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K+L  +G                 L     +     ++ +R+   +EV+ +  +E  +
Sbjct: 180 LRKNLQARGSNLVVR----VGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIESAM 235

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLT 185
           +   V  K F  S L     +      +   Y  F+  + +  ++  + +L  + ++   
Sbjct: 236 KEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVHKLEIRKTIAALDQLKSLPSR 295

Query: 186 GPVTPSNIPRFFDYPFQAI-------DPMFPIGEQNALHILRKFCKEKVYYYVE------ 232
           G V   +IP   D              P    GE  AL  L+ F  +      +      
Sbjct: 296 GDVELGDIPSLLDLGISPTARTSQEGKPTMVGGETEALTRLKSFAADCQARLSKGNQKGG 355

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNEL 285
              +     + ++SP+L++G +SPR  ++ LK+                 +G    + EL
Sbjct: 356 NNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTTTTPRNGPGDTGLNWLMYEL 415

Query: 286 IWREFYRHLMAFY 298
           +WR+F+R +   Y
Sbjct: 416 LWRDFFRFITKKY 428


>gi|262041228|ref|ZP_06014439.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041344|gb|EEW42404.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 167

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/165 (49%), Positives = 113/165 (68%), Gaps = 1/165 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIASHLQ 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHAALAERGIPLWVEEADDFTASVERLADFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
           L+  VIC+ FDDSVLLPPGS+L    +MYKV+TPF+ A I+ L  
Sbjct: 121 LRD-VICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRD 164


>gi|15226633|ref|NP_182281.1| PHR2 (photolyase/blue-light receptor 2); DNA photolyase
           [Arabidopsis thaliana]
 gi|116248577|sp|Q8LB72|PHR2_ARATH RecName: Full=Blue-light photoreceptor PHR2
 gi|2529668|gb|AAC62851.1| photolyase/blue-light receptor (PHR2) [Arabidopsis thaliana]
 gi|3319288|gb|AAC26199.1| photolyase/blue light photoreceptor PHR2 [Arabidopsis thaliana]
 gi|115646759|gb|ABJ17108.1| At2g47590 [Arabidopsis thaliana]
 gi|330255768|gb|AEC10862.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
          Length = 447

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 120/313 (38%), Gaps = 32/313 (10%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQ 67
           W RNDLR+ DN+ L +A       V+ V+   P  + +           ++ F+  S+ +
Sbjct: 120 WFRNDLRVHDNECLNSANDEC-VSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSE 178

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K+L  +G                 L     +     ++ +R+   +EV+ +  +E  +
Sbjct: 179 LRKNLQARGSNLVVR----VGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAM 234

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLT 185
           +   V  K F  S L     +      +   Y  F+  + +  ++  + +L  + ++   
Sbjct: 235 KEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSR 294

Query: 186 GPVTPSNIPRFFDYPFQAI-------DPMFPIGEQNALHILRKFCKEKVYYYVE------ 232
           G V   +IP   D              P    GE  AL  L+ F  +      +      
Sbjct: 295 GDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQARLSKGNQKGG 354

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNEL 285
              +     + ++SP+L++G +SPR  ++ LK+                 +G    + EL
Sbjct: 355 NNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDTGLNWLMYEL 414

Query: 286 IWREFYRHLMAFY 298
           +WR+F+R +   Y
Sbjct: 415 LWRDFFRFITKKY 427


>gi|21592984|gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana]
          Length = 447

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 120/313 (38%), Gaps = 32/313 (10%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQ 67
           W RNDLR+ DN+ L +A       V+ V+   P  + +           ++ F+  S+ +
Sbjct: 120 WFRNDLRVHDNECLNSANDEC-VSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSE 178

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K+L  +G                 L     +     ++ +R+   +EV+ +  +E  +
Sbjct: 179 LRKNLQARGSNLVVR----VGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAM 234

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLT 185
           +   V  K F  S L     +      +   Y  F+  + +  ++  + +L  + ++   
Sbjct: 235 KEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSR 294

Query: 186 GPVTPSNIPRFFDYPFQAI-------DPMFPIGEQNALHILRKFCKEKVYYYVE------ 232
           G V   +IP   D              P    GE  AL  L+ F  +      +      
Sbjct: 295 GDVELGDIPSLLDLGISPTPRTSQEGKPTMVGGETEALTRLKSFAADCQXRXSKGNQKGG 354

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-------PKSGAFSWLNEL 285
              +     + ++SP+L++G +SPR  ++ LK+                 +G    + EL
Sbjct: 355 NNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDTGLNWLMYEL 414

Query: 286 IWREFYRHLMAFY 298
           +WR+F+R +   Y
Sbjct: 415 LWRDFFRFITKKY 427


>gi|47212596|emb|CAF93038.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 662

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 29/196 (14%)

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRI 371
           +I W+++   L  W +G TGFP IDA M QL   GW+H++ R  +A FL + DL + W  
Sbjct: 452 QIPWDQNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHQARRASACFLTRGDLWISWEC 511

Query: 372 GEE---------------------YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           G +                      F   LLD D + N G W W  S       +F+ + 
Sbjct: 512 GMKVGGPPWSRRRRRRLSARLLPQVFEELLLDADWSVNAGSWMW-LSCSAFFQQFFKCYC 570

Query: 411 PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHK 464
           P   G+R DP G +IR ++P L + P +YI+ P +  +         + ++YP P+++H 
Sbjct: 571 PVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAVQKAANCVVGVDYPRPMINHA 630

Query: 465 KACHHTLNQYYAAKKQ 480
           +     + +     +Q
Sbjct: 631 EGSRLNIERMKQVYQQ 646



 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 67/227 (29%), Gaps = 36/227 (15%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL  A   +D+ +  V++  P       +   +  F+  +L  + 
Sbjct: 5   SVHWFRKGLRLHDNPALQEALSGADS-LRCVYVLDPWFAGAANVGINRWRFLLEALEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDS--------------------------------Y 97
            SL +        +    D     L                                   
Sbjct: 64  CSLKKLNSRLFVVRGQPTDVFPRLLKVGAGPVRSLVFQSADRAGAMIRASCRCLILSVCV 123

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSIL-NHALQMY 155
             + +VT+L +    E     RD  + K  Q   V     +   L     I+  +     
Sbjct: 124 PQEWKVTRLTFEYDPEPYGKERDGAIIKMAQQFGVETIVRNSHTLYNLDRIVEMNNNSPP 183

Query: 156 KVYTPFRKALIQ-NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
             +  F+  + +  L +  L S+    +   G     N  + +  P 
Sbjct: 184 LTFKRFQTIVSRLELPRRPLPSVTQQQMDKCGTPVADNHDQLYSIPS 230


>gi|52699557|gb|AAU86901.1| cryptochrome 2 [Sylvia borin]
          Length = 244

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 8/162 (4%)

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGD 384
           W +G TGFP IDA M QL   GW+H+  R   A FL + DL + W  G   F   LLD D
Sbjct: 1   WAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDAD 60

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPH 444
            + N G W W  S       +F  + P   G+R DP G +++ +LP+L   P++YI+ P 
Sbjct: 61  FSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPW 119

Query: 445 SWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +  +      K  + ++YP P+V+H +     + +     +Q
Sbjct: 120 NAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 161


>gi|303276951|ref|XP_003057769.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460426|gb|EEH57720.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 502

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 102/490 (20%), Positives = 165/490 (33%), Gaps = 79/490 (16%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK--LFYNR 110
           I      +++ +L  +   +             NF               +    +F   
Sbjct: 4   IGEASRVWLHHALRSLDVDVRAT----YGGGGVNFFAGAHGASLLAAANAIDAKIVFCTA 59

Query: 111 QYEINEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSI---LNHALQMYKVYTPFRKALI 166
           ++E   V RD      L+ R I   +    +L  P ++   +      +    PF  A  
Sbjct: 60  RHEPAHVARDAATAAFLEARGIALVTLPGHLLWDPRALKIDMRREKYFFGTLMPFVHAAE 119

Query: 167 QNLVQADLRSLPVPA----------------IRLTGPVTPSNIPRFFDYPFQAIDPMFPI 210
            +  +    +    A                  L   +      R        + P FP 
Sbjct: 120 TSGGKVAAPTPAPSAAPCVDLEGADLGADLGADLGADLGADASVRLTSLDDLGVSPRFPP 179

Query: 211 G--------------EQNALHILRKFCKEKVYYYVEQRDIPAI----QGTSQLSPYLSIG 252
           G              E+ A  +   F +  +  Y  +            TS++SPYL  G
Sbjct: 180 GRDWSSGIRDEWDISERGANEVWASFTRRGLPEYEAEHGRADAVAPAASTSRMSPYLRFG 239

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312
            +SPR  ++ LK          K  +  + + +  REF    +A +P +        +  
Sbjct: 240 QISPRAMYHDLKRA------DGKRVSRLFWHRVHRREFAYWQLANWPDMGTKSIRRHYDR 293

Query: 313 KIEWNKDS-------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           + +W  D         +L+ W++G TGFP +DA MR+L T GWMH   RM+ A+FL   L
Sbjct: 294 RADWIPDPTRDAASAEILRRWREGRTGFPAVDAGMRRLWTTGWMHQTERMLCATFLCDYL 353

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR---IFNPTIQGKRFDPQG 422
            V W  G  +F   L+D DLA N   WQ A  +G D    F      + +   +  DP G
Sbjct: 354 NVHWVHGARWFHDTLVDADLAINAMMWQNAGKSGLDQWDVFSGSLAPDGSKPCRAHDPLG 413

Query: 423 TFIRHWLPELNNVPTQYI-HAPHSWLDK---------NDLSLN--YPLPI------VDHK 464
             I   +PEL  +P  ++ H P    D               +  YP  +      VD  
Sbjct: 414 DAIATRVPELAGLPRGHLRHRPWEASDAVLETSGVVIRGAGEDGAYPERMLPGVGDVD-G 472

Query: 465 KACHHTLNQY 474
                   + 
Sbjct: 473 AGREDARARM 482


>gi|13543860|gb|AAH06077.1| Cry2 protein [Mus musculus]
          Length = 243

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/160 (35%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLA 386
           +G TGFP IDA M QL   GW+H+  R   A FL + DL V W  G   F   LLD D +
Sbjct: 1   EGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFS 60

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
            N G W W  S       +F  + P   G+R DP G +IR +LP+L   P++YI+ P + 
Sbjct: 61  VNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNA 119

Query: 447 LD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            +      K  + ++YP PIV+H +     + +     +Q
Sbjct: 120 PESVQKAAKCIIGVDYPRPIVNHAETSRLNIERMKQIYQQ 159


>gi|162660638|gb|EDQ48467.1| AtPHR2-like type 1 CPD DNA photolyase [Physcomitrella patens subsp.
           patens]
          Length = 148

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/148 (52%), Positives = 94/148 (63%), Gaps = 6/148 (4%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQLNT G+MHNRLRM+ ASFLVKDL +DWR GE +F  QL D DLA+NNGGWQWAASTG
Sbjct: 1   MRQLNTTGYMHNRLRMVAASFLVKDLGIDWRRGEAWFARQLNDFDLAANNGGWQWAASTG 60

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLS 453
            D+ P+FRIFNP  Q ++FD    FI  ++PEL  +P    HAP              L 
Sbjct: 61  CDAQPWFRIFNPITQSQKFDADARFIERYVPELARLPAALRHAPWQARPLELAEAGVVLG 120

Query: 454 LNYPLPIVDHKKACHHTLNQYYAAKKQS 481
            +YP P+VDH  A   TL +Y   K+  
Sbjct: 121 KDYPHPVVDHAAARERTLARYGVVKQAG 148


>gi|224068346|ref|XP_002302716.1| predicted protein [Populus trichocarpa]
 gi|222844442|gb|EEE81989.1| predicted protein [Populus trichocarpa]
          Length = 471

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 125/330 (37%), Gaps = 47/330 (14%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           +VW RNDLR+ DN+ L +A +N    V+ V+   P  + +           +++F+  S+
Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 185

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++K+L  +G                 L           ++ +R+   +EV+ ++ +E+
Sbjct: 186 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAHREVSHDEVKAEEKIEE 241

Query: 126 RLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIR 183
            ++   V  K F  S L     +      M   Y  F++ +    ++  + +L  +  + 
Sbjct: 242 LMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQLKGLP 301

Query: 184 LTGPVTPSNIPRFFDYPFQ---------------------AIDPMFPIGEQNALHILRKF 222
             G V P +IP   D                         A +     GE  AL  L KF
Sbjct: 302 SRGDVEPGDIPNLLDLGLNPAQGTCCIVSLNTCQSQDGKAAANASMVGGETEALQRLNKF 361

Query: 223 CKEKVYYYVE---QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
             E      +      I     + ++SP+L++G +S R  ++ LK+     +    +   
Sbjct: 362 AAECQAQPPKGGSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTISAASNHNS 421

Query: 280 -----------SWLNELIWREFYRHLMAFY 298
                        + EL+WR+F+R +   Y
Sbjct: 422 GGSSSPGAGMNWLMFELMWRDFFRFITKKY 451


>gi|163840005|ref|YP_001624410.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
 gi|162953481|gb|ABY22996.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
          Length = 147

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 67/142 (47%), Positives = 90/142 (63%), Gaps = 1/142 (0%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MRQL   GWMHNR+RM+ ASFLVK+LL+DWR GE++F   L+D DLASN   WQW A +G
Sbjct: 1   MRQLWQTGWMHNRVRMVVASFLVKNLLIDWREGEKWFWDTLVDADLASNPANWQWVAGSG 60

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW-LDKNDLSLNYPL 458
            D+ PYFR+FNP  Q K+FD  G ++R ++PEL  + ++ IH P       +D  L YP 
Sbjct: 61  ADAAPYFRVFNPVTQSKKFDSDGDYLRKFVPELAALGSKEIHEPWKIKPTLDDKPLEYPD 120

Query: 459 PIVDHKKACHHTLNQYYAAKKQ 480
           P+VD   +    L  Y   + +
Sbjct: 121 PLVDLGVSRERALEAYAELRAK 142


>gi|21218740|ref|NP_624519.1| deoxiribopirymidine photolyase [Streptomyces coelicolor A3(2)]
 gi|5748645|emb|CAB53150.1| deoxiribopirymidine photolyase [Streptomyces coelicolor A3(2)]
          Length = 415

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/169 (41%), Positives = 98/169 (57%), Gaps = 5/169 (2%)

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
             + W            G TG+P++DAAMRQL   GWMHNR R++ ASFL K L VDWRI
Sbjct: 251 RPVAWRGGRRRGHRRLAGRTGYPVVDAAMRQLRHQGWMHNRARLLVASFLTKTLYVDWRI 310

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G  +F+  L+DGD+ +N   WQWAA TG D+ P+ R+ NP +Q +RFDP G ++R W+PE
Sbjct: 311 GARHFLDLLVDGDVVNNQLNWQWAAGTGTDTRPH-RVLNPLVQARRFDPDGVYVRRWVPE 369

Query: 432 LNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           L +V    +H P          L+YP P+V+        L ++  A+ +
Sbjct: 370 LRSVEGGKVHEPWRLAAAERGELDYPDPLVELADG----LARFKHARGR 414


>gi|290510439|ref|ZP_06549809.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55]
 gi|289777155|gb|EFD85153.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 1_1_55]
          Length = 160

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/161 (49%), Positives = 113/161 (70%), Gaps = 1/161 (0%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+ HLVWLR DLRI DN AL AAC +  A+V+A++IATP QWR+H ++ RQ+ FI + L 
Sbjct: 1   MATHLVWLRTDLRIHDNLALAAACRDPQAQVLALYIATPGQWREHHLAPRQAAFIVSHLH 60

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +  +L+++GI     +  +F  S+E L  +C Q +V+ LFYN QYE NE +RD  +E  
Sbjct: 61  SLHTALAERGIPLWVEEADDFTASVERLAHFCQQHQVSHLFYNYQYEFNERQRDAAVENT 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
           L+  VIC+ FDDSVLLPPGS++  + +MYKV+TPF+ A I+
Sbjct: 121 LRD-VICQGFDDSVLLPPGSVMTGSGEMYKVFTPFKNAFIR 160


>gi|300934389|ref|ZP_07149645.1| deoxyribodipyrimidine photolyase [Corynebacterium resistens DSM
           45100]
          Length = 216

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 112/227 (49%), Gaps = 22/227 (9%)

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
           SPR  W  + E   +     +S A ++  +LIWR+F  H +   P++           + 
Sbjct: 2   SPRTVWATISEA-AERGEIAESEAGAFRRQLIWRDFAWHRLYHVPTLATCN-VQAKFNRF 59

Query: 315 EWNKDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
            W  +         AWK+G TG P++DA MR+L   G MHNR+RM+  S L K+LL+ WR
Sbjct: 60  PWGWNEARDSAEFDAWKRGITGVPLVDAGMRELWETGSMHNRVRMVVGSLLTKNLLIHWR 119

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
           +GEE+F   L+D D A N   WQW A  G+D+ PYFRIFNP  Q + FD +  + + W+P
Sbjct: 120 LGEEWFWDTLVDADYACNPFNWQWVAGCGDDAAPYFRIFNPVTQAQIFDKESLYQQTWVP 179

Query: 431 ELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           E       Y                 P PIVD K++    L  Y + 
Sbjct: 180 EAQTNHDGYP----------------PQPIVDLKQSRAEALAVYESL 210


>gi|80971694|gb|ABB52817.1| cryptochrome 1 [Sesamia nonagrioides]
          Length = 247

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 10/236 (4%)

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
            IQ   +      P+ A  +   +   +   F +     +   +P GE   L  L  +  
Sbjct: 17  CIQITKEISDHCKPIDADSIKFDIPSLDELEFDESGLNPLK--YPGGETEGLRRLNMYMA 74

Query: 225 EKVY--YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
            + +   + +    P      T+ LSPY+S G LS +  +++LKE    +  +      S
Sbjct: 75  RREWVCKFEKPNSSPNSLEPSTTVLSPYISHGCLSAKLFYHKLKEVLNSM--RHTEPPVS 132

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            L +L+WREFY    A   +            +I W K+   L AW +G TG+P +DA M
Sbjct: 133 LLGQLMWREFYYTAGAGTENFDKM-VGNSVCTQIPWGKNEEHLIAWAEGRTGYPFVDAIM 191

Query: 341 RQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           RQL   GW+H+  R + A FL + DL + W  G + F   LLD D + N G W W 
Sbjct: 192 RQLKQEGWIHHLARHMVACFLTRGDLWISWEQGAKVFEDYLLDYDWSLNAGNWMWV 247


>gi|225873485|ref|YP_002754944.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC
           51196]
 gi|225793521|gb|ACO33611.1| deoxyribodipyrimidine photolyase [Acidobacterium capsulatum ATCC
           51196]
          Length = 470

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 162/449 (36%), Gaps = 32/449 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              + W++   R  DN AL  A    +   + V             + R   F+   L  
Sbjct: 27  KCVVYWMQRAQRALDNPALDMAIRIGNELGLPVVAYFSAISNFPHANLRHYVFLNQGLAD 86

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++ ++++ + F   +          L+    + +   L  +        R  +++ KRL
Sbjct: 87  IEEDMAERNVTFIVRRPPG-----NSLEQLLEEVQAAMLIGDENPCREPERWRQVIAKRL 141

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL----RSLPVPAIR 183
              +   + D  V++P      H   ++     F   L Q LV   +    +S P P   
Sbjct: 142 --NMPYWTIDADVVVPSNLFPKHQYMVHIFRKRFEPLLPQYLVPQPVIQAEKSWPHPKGF 199

Query: 184 LTGPV--TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
               V    +     FD   + +D  F  G   A  +L+ F   K+  Y ++R+ P + G
Sbjct: 200 EAFDVRHDVTEGWSKFDRSVKPVDS-FHGGTHEAQRLLKDFVTNKLANYPKERNHPELDG 258

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
           TS+LSPYL  G +SP      +++   +     ++        + WR+   + + F P  
Sbjct: 259 TSRLSPYLHFGHISPLTIALAVEDAHKNKHASREACDSYLNELIAWRDMAVNFVKFVPGY 318

Query: 302 CMGKPFIPWTEKIEWNKDSH------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              +    W +K               L+  ++  T   + +AA RQ+   GWMHN +RM
Sbjct: 319 DSFEAAPEWAQKTLREHARDTRDPIYTLEELERAETCDELWNAAQRQMLHAGWMHNYMRM 378

Query: 356 ITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PY 405
             A  +++     +  W           LDG   +   G  WA    +D           
Sbjct: 379 YWAKKILEWSPSPVQAWETCVYLNDRYFLDGRDPNGYAGIAWAIGGVHDRPWFERDIFGT 438

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLPELNN 434
            R  +     K+FD    +IR  + EL  
Sbjct: 439 IRYMSGNAAAKKFDAT-RYIRQ-MEELAE 465


>gi|302745158|gb|ADL62682.1| cryptochrome 2b [Phreatichthys andruzzii]
          Length = 180

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 8/179 (4%)

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366
            P   +I W+++   L  W +  TGFP IDA M QL   GW+H   R     FL + DL 
Sbjct: 3   NPICIRIPWDRNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHYLARNAVTCFLTRGDLW 62

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           ++W  G + F   LLD D + N G W    S  +    +F  + P   G+R DP G FIR
Sbjct: 63  INWEEGMKIFEELLLDADWSVNAGSWL-CHSCSSFFQQFFHCYCPVGFGRRIDPNGDFIR 121

Query: 427 HWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
            +LP L + P ++I+ P +  D      K  + ++YP P+V+H +A    + +     +
Sbjct: 122 CYLPVLRDFPAKFIYDPWNAPDDVQRAAKCVIGMDYPKPMVNHAEASRLNIERMRQIYQ 180


>gi|146078221|ref|XP_001463490.1| DNA photolyase [Leishmania infantum JPCM5]
 gi|134067576|emb|CAM65855.1| putative DNA photolyase [Leishmania infantum JPCM5]
          Length = 932

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 22/290 (7%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQGTSQL---SPYLSIGVLSPR 257
                 GE  AL  L+ +  +        Y  +R       + +L   SPY+++G LSPR
Sbjct: 550 SSHPDAGEDAALARLQNWLAQGGVTSLLRYGRERRTNTKMYSQKLARVSPYIALGALSPR 609

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIW--REFYRHLMAFYPSVCMGKPFIPWTEKI- 314
           + +  +  EF     +       +   L+   R  Y H M       +   + P  E   
Sbjct: 610 K-YYEVLREFAQENQRDAFVQQQFREGLLRLSRRDYWHWMGLRFGDRLFFSYGPHPEHTD 668

Query: 315 ---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
              EW  D  ++Q W  G TG P  DAAMR+L   G++    R   A  L +    DWR+
Sbjct: 669 DVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQEGRQALAWLLTRGYGQDWRV 728

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G E+     LD D     G + ++     D      + N      + D  G +++ WLP+
Sbjct: 729 GAEWMERCSLDYDPFVCYGNYAYSCGLMLDDFGEP-VRNVYYLAHQHDQTGIYVKKWLPQ 787

Query: 432 LNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           L+ VP  YIH PH   ++        L  NYP P+    +    +L+   
Sbjct: 788 LSKVPPVYIHRPHVLTERMQAMHGVYLGKNYPYPL-KLWQGAQRSLSAAE 836



 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 19/133 (14%)

Query: 17  DLRITDNKALYAAC---------HNSDAKVIAVFIATPEQWRQHGI-------SARQSHF 60
           DLR+ DN+ L  A            S   VI V +     + Q          S +++ F
Sbjct: 237 DLRVHDNQLLAFASVCARAAAAEAGSPVPVIGVCVLDYRTFAQPSTVGGFFRQSPQRAQF 296

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++  +++ L                   E +    ++     +    QY  +E R  
Sbjct: 297 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELGAMDVLMTTQYAPHERRVQ 353

Query: 121 KLLEKRLQHRVIC 133
            L+ +RL+     
Sbjct: 354 ALMVRRLRAGTWV 366


>gi|157865002|ref|XP_001681209.1| DNA photolyase [Leishmania major strain Friedlin]
 gi|68124504|emb|CAJ02458.1| putative DNA photolyase [Leishmania major strain Friedlin]
          Length = 934

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 114/290 (39%), Gaps = 22/290 (7%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQGTSQL---SPYLSIGVLSPR 257
                 GE  AL  L+ +  +        Y  +R       + +L   SPY+++G LSPR
Sbjct: 552 SSHPDAGEDAALARLQDWLAQGGVTSLLRYGRERRTNTKMYSQKLARVSPYIALGALSPR 611

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIW--REFYRHLMAFYPSVCMGKPFIPWTEKI- 314
           + +  +  EF     +       +   L+   R  Y H M       +   + P  E   
Sbjct: 612 K-YYEVLREFAQANQRDAFVQQQFREGLLRLSRRDYWHWMGLRFGDRLFFSYGPHPEHTD 670

Query: 315 ---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
              EW  D  ++Q W  G TG P  DAAMR+L   G++    R   A  L +    DWR+
Sbjct: 671 DVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQEGRQALAWLLTRGYGQDWRL 730

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G E+     LD D     G +  +     D      + N      + D  G +++ WLP+
Sbjct: 731 GAEWMERCSLDYDPFVCYGNYAHSCGLMLDDFGEP-VRNVYYLAHQHDQTGIYVKKWLPQ 789

Query: 432 LNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           L+ VP  YIH PH   ++        L  NYP P+    +    +L+   
Sbjct: 790 LSKVPPVYIHRPHVLTERMQAMHGVYLGKNYPYPL-KLWQGAQRSLSAAE 838



 Score = 68.1 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 23/174 (13%)

Query: 17  DLRITDNKALY-------AACHNSDAKV--IAVFIATPEQWRQHGI-------SARQSHF 60
           DLR+ DN+ L        AA       V  I V +     + Q          S +++ F
Sbjct: 239 DLRVHDNQLLAFASVCTKAAAEEVGGPVPVIGVCVLDYRTFAQPSAVGGFFRQSPQRAQF 298

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++  +++ L                   E +    ++   T +    QY  +E R  
Sbjct: 299 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELGATVVLMTTQYAPHERRVQ 355

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            L+ +RL+        + S      +++  A+      TP  K       + D 
Sbjct: 356 ALMVRRLRAGTWVSREEVSD----EAVVTGAVGQGAPVTPLDKHCGSAAEEDDP 405


>gi|20092859|ref|NP_618934.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A]
 gi|19918164|gb|AAM07414.1| deoxyribodipyrimidine photolyase [Methanosarcina acetivorans C2A]
          Length = 462

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 157/454 (34%), Gaps = 52/454 (11%)

Query: 12  VWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            W+  D R+ DN AL  A      ++  V+ VF          G   R   F+   L ++
Sbjct: 21  YWMSRDQRVEDNWALLFAQVIAQEANVPVVVVFCL---IEGFLGAGRRHYEFMLKGLQEL 77

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +++LS+K I F + +        E++  Y +   +T       +    ++ + + +    
Sbjct: 78  EEALSRKKIPFYFLRGDPGQKIPEFVKEYEVGTLIT------DFSPLRIKAEWVGKIISA 131

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTG 186
             +     D   ++P              + P  +           +L          +G
Sbjct: 132 IEIPFFEVDAHNVVPCWEASPKQEYAAHTFRPKLYGHLSEFLEEFPELEPNSESLKIRSG 191

Query: 187 PVTPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVYYYV 231
              P  + R  +   +A+ P                F  GE+ A   +  F   ++  Y 
Sbjct: 192 TGMPGILFRTRETEIKALFPEEISDENKDLLFEPEHFEPGEKAARKEMESFLAARLDSYN 251

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREF 290
             R+ P     S LSPYL  G +S ++    +++   D   K      ++L+E L+W+E 
Sbjct: 252 TLRNDPTKNALSNLSPYLHFGQISAQRVVLEVEKAKSDPESK-----KAFLDEILVWKEI 306

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLN 344
             +   + P     + F  W +K       D     +  + ++ G T  P+ +A+  +L 
Sbjct: 307 ADNFCYYNPGYDSFESFPDWAKKSLNAHRNDRRKYIYTFEEFEAGKTHDPLWNASQIELL 366

Query: 345 TIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
             G MH+ +RM  A       +       +         LDG   +   G  W+    +D
Sbjct: 367 RTGKMHSYMRMYWAKKILEWSESPEKALEVAICLNDRYELDGRDPNGYAGIAWSIGGLHD 426

Query: 402 SV-------PYFRIFNPTIQGKRFDPQGTFIRHW 428
                       R  +     ++F+ +  +I  +
Sbjct: 427 RAWREREVTGKIRYMSYEGCKRKFNVK-LYIAKY 459


>gi|322496922|emb|CBZ31992.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 932

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 22/290 (7%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQGTSQL---SPYLSIGVLSPR 257
                 GE  AL  L+ +  +        Y  +R       + +L   SPY+++G LSPR
Sbjct: 550 SSHPDAGEDAALARLQNWLAQGGVTSLLRYGRERRTNTKMYSQKLARVSPYIALGALSPR 609

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIW--REFYRHLMAFYPSVCMGKPFIPWTEKI- 314
           + +  +  EF     +       +   L+   R  Y H M       +   + P  E   
Sbjct: 610 K-YYEVLREFAQENQRDAFVQQQFREGLLRLSRRDYWHWMGLRFGDRLFFSYGPHPEHTD 668

Query: 315 ---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
              EW  D  ++Q W  G TG P  DAAMR+L   G++    R   A  L +    DWR+
Sbjct: 669 DVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQEGRQALAWLLTRGYGQDWRV 728

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G E+     LD D     G + ++     D      + N      + D  G +++ WLP+
Sbjct: 729 GAEWMERCSLDYDPFVCYGNYAYSCGLMLDDFGEP-VRNVYYLAHQHDQTGIYVKKWLPQ 787

Query: 432 LNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           L+ VP  YIH PH   ++        L  NYP P+    +    +L+   
Sbjct: 788 LSKVPPVYIHRPHVLTERMQAMHGVYLGKNYPYPL-KLWQGAQRSLSAAE 836



 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 19/133 (14%)

Query: 17  DLRITDNKALYAAC---------HNSDAKVIAVFIATPEQWRQHGI-------SARQSHF 60
           DLR+ DN+ L  A            S   VI V +     + Q          S +++ F
Sbjct: 237 DLRVHDNQLLAFASVCARAAAAEAGSPVPVIGVCVLDYRTFAQPSTVGGFFRQSPQRAQF 296

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++  +++ L                   E +    ++     +    QY  +E R  
Sbjct: 297 LLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELGAMDVLMTTQYAPHERRVQ 353

Query: 121 KLLEKRLQHRVIC 133
            L+ +RL+     
Sbjct: 354 ALMVRRLRAGTWV 366


>gi|154332778|ref|XP_001562651.1| DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134059654|emb|CAM41774.1| putative DNA photolyase [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 959

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 116/290 (40%), Gaps = 22/290 (7%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQGTSQL---SPYLSIGVLSPR 257
                 GE  AL  L+ +  +        Y  +R       + +L   SPY+++G LSPR
Sbjct: 577 SSHPDAGEDAALVRLQDWLAQGGVTSLLRYGRERRTNTKMYSQKLARVSPYIALGALSPR 636

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIW--REFYRHLMAFYPSVCMGKPFIPWTEKIE 315
           + +  +  EF     +       +   L+   R  Y H M       +   + P  E  +
Sbjct: 637 K-YYEVLREFAQANQRDAFVQQQFREGLLRLSRRDYWHWMGLRFGDRLFFSYGPHPEHTD 695

Query: 316 ----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
               W  D  ++Q W  G TG P  DAAMR+L   G++ +  R   A  L +    DWR+
Sbjct: 696 DVPDWRHDRKVVQRWCNGLTGIPFADAAMRELVGTGFVAHEGRQALAWLLTRGYGQDWRL 755

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G E+     LD D     G + ++     D      + +      + D  G +++ WLP+
Sbjct: 756 GAEWMERCSLDYDPFVCYGNYAYSCGLILDDFGEP-VRSVYYLAHQHDQTGIYVKKWLPQ 814

Query: 432 LNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           L+ VP  Y+H PH   ++        L  NYP P+    +    +L+   
Sbjct: 815 LSKVPPVYVHRPHVLTERMQAMHGVYLGKNYPYPL-KLWQGAQRSLSAAE 863



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 19/133 (14%)

Query: 17  DLRITDNKALYAACHNSDA---------KVIAVFIATPEQWRQHGI-------SARQSHF 60
           DLR+ DN  L  A   + A          VI V +     + Q  +       S +++ F
Sbjct: 264 DLRVHDNHLLAFASGCARAAAIKTGGPVSVIGVCVLDYRTFAQPSVVGGFFRQSPQRAQF 323

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  ++  ++  L                   E +    ++     +    QY  +E R  
Sbjct: 324 LLDTVAALRVKLE---GTLHVPLLVRCGRPEEHVPRLAVELGAMHVLMTTQYAPHERRVQ 380

Query: 121 KLLEKRLQHRVIC 133
           +L+ +RL+     
Sbjct: 381 ELMVRRLRAGTWV 393


>gi|255324708|ref|ZP_05365822.1| deoxyribodipyrimidine photolyase [Corynebacterium
           tuberculostearicum SK141]
 gi|255298183|gb|EET77486.1| deoxyribodipyrimidine photolyase [Corynebacterium
           tuberculostearicum SK141]
          Length = 158

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 91/157 (57%), Gaps = 23/157 (14%)

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
            L+ W+ G TG P++DA MR+L   G+MHNR+RM+  SFL K+L + WR+GEE+F   L+
Sbjct: 24  RLKDWQAGTTGIPLVDAGMRELWATGYMHNRVRMVVGSFLTKNLGIHWRLGEEWFWDTLV 83

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D D ASN   WQW A  G+D+ P+FRIFNP  Q KRFDP G ++R W P L+        
Sbjct: 84  DADAASNPFNWQWVAGCGDDAAPFFRIFNPETQAKRFDPDGEYVRRWAPALS-------- 135

Query: 442 APHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           AP               PIVD +++    L+ Y   K
Sbjct: 136 AP---------------PIVDLQESRQAALDAYAEIK 157


>gi|322488942|emb|CBZ24191.1| putative DNA photolyase [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 933

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 22/290 (7%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVY----YYVEQRDIPAIQGTSQL---SPYLSIGVLSPR 257
                 GE  AL  L+ +  +        Y  +R       + +L   SPY+++G LSPR
Sbjct: 551 SSHPDAGEDAALVRLQDWLAQGGVTSLLRYGRERRTNTKMYSQKLARVSPYIALGALSPR 610

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIW--REFYRHLMAFYPSVCMGKPFIPWTEKI- 314
           + +  +  EF     +       +   L+   R  Y H M       +   + P  E   
Sbjct: 611 K-YYEVLREFAQANQRDAFVQQQFREGLLRLSRRDYWHWMGLRFGDRLFFSYGPHPEHTD 669

Query: 315 ---EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
              EW  D  ++Q W  G TG P  DAAMR+L   G++    R   A  L +    DWR+
Sbjct: 670 DVPEWRHDRKVVQRWCDGLTGIPFADAAMRELVGTGFVAQEGRQALAWLLTRGYGQDWRL 729

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
           G E+     LD D     G + ++     D      + N      + D  G +++ WLP+
Sbjct: 730 GAEWMERCSLDYDPFVCYGNYAYSCGLMLDDFGEP-VRNVYYLAHQHDQTGIYVKKWLPQ 788

Query: 432 LNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYY 475
           L+ VP  YIH PH   ++        L  NYP P+    +    +L+   
Sbjct: 789 LSKVPPVYIHRPHVLTERMQAMHGVYLGRNYPYPL-KLWQGAQRSLSAAK 837



 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 20/140 (14%)

Query: 11  LVWL-RNDLRITDNKALYAAC---------HNSDAKVIAVFIATPEQWRQHGI------- 53
           LV     DLR+ DN+ L  A                VI V +     + Q          
Sbjct: 231 LVVFSTTDLRVHDNQLLAFASVCARAAAAEAGGPVPVIGVCVLDYRTFAQPSTVGGFFRQ 290

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           S +++ F+  ++  +++ L                   E +    ++ R   +    QY 
Sbjct: 291 SPQRAQFLLDTVAALRRKLED---TLHVPLLVRCGRPEEHVPRLAVELRAMDVLMTTQYA 347

Query: 114 INEVRRDKLLEKRLQHRVIC 133
            +E R   L+ +RLQ     
Sbjct: 348 PHERRVQALMVRRLQAGTWV 367


>gi|73668073|ref|YP_304088.1| deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri
           str. Fusaro]
 gi|72395235|gb|AAZ69508.1| Deoxyribodipyrimidine photo-lyase type II [Methanosarcina barkeri
           str. Fusaro]
          Length = 462

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 159/462 (34%), Gaps = 46/462 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           +           W+  D R+ DN AL  A   +    + VF+      +  G   RQ  F
Sbjct: 10  LSGKPGKGPVAYWMSRDQRVEDNWALLFARKIALEADVPVFVVFCLVDKFLGAIRRQYEF 69

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L +V+ +L++K I F + Q    +   ++++ Y +   +T       +    ++R 
Sbjct: 70  MLKGLQEVEATLARKKIPFFFLQGDPEEKIPDFIEKYGIGTLIT------DFSPLRIKRT 123

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS---- 176
              +     +V     D   ++P              + P    L+   +          
Sbjct: 124 WTEKVASSIKVPFFEVDAHNVVPCWEASKKQEYAAHTFRPKLLRLLPEFLTEYPELETNL 183

Query: 177 -LPVPAIRLTGPVTPSNIPR------------FFDYPFQAIDPMFPIGEQNALHILRKFC 223
             P  A+R       S + +                 F     +F  GE  A  ++ +F 
Sbjct: 184 EFPEIAVRSGKAERFSEVQKSGIGTRLPGEFLEKKAGFLPDLALFEAGETAARKVMDEFL 243

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             K+  Y   R+ P     S LSPYL  G +S ++   ++++   DL  K       +L+
Sbjct: 244 TNKLDSYSSLRNDPTKDALSNLSPYLHFGQISAQRVALKVEKAKADLESK-----RVFLD 298

Query: 284 ELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDSH----LLQAWKQGYTGFPII 336
           EL+  +E   +   + P       F  W +K      +D       L+  + G T  P+ 
Sbjct: 299 ELLVRKELADNFCYYNPFYDSFDGFPDWAKKTLNSHRRDQRSHIFTLEELETGRTYDPLW 358

Query: 337 DAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           +A+  +L   G MH+ +RM  A       +                 LDG   +   G  
Sbjct: 359 NASQIELIRKGKMHSYMRMYWAKKILEWSESPEKALETAIYLNDKYELDGRDPNGYAGIA 418

Query: 394 WAASTGNDSV-------PYFRIFNPTIQGKRFDPQGTFIRHW 428
           W+    +D            R  +     ++FD + ++I  +
Sbjct: 419 WSIGGVHDRAWQEREIFGKIRYMSYEGSKRKFDVK-SYIDKY 459


>gi|160335068|gb|ABX24942.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 186

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/183 (36%), Positives = 105/183 (57%), Gaps = 1/183 (0%)

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
             +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW
Sbjct: 2   ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           +QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL 
Sbjct: 61  RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW 446
           S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH P + 
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180

Query: 447 LDK 449
            + 
Sbjct: 181 PES 183


>gi|18857915|dbj|BAB85473.1| CRYPTOCHROME [Sarcophaga crassipalpis]
          Length = 216

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 9/182 (4%)

Query: 308 IPWTEKIEW-NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DL 365
                 I W   +   LQ W QG TGFP+IDAAMRQL   GW+H+ LR   A+FL +  L
Sbjct: 5   NEICLNIPWAQTNHEQLQRWYQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGL 64

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTF 424
             +W  G  YF+  LLD D +   G W W +S+  + +     +  P    KR DP G +
Sbjct: 65  WQNWEHGLRYFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLDPMGQY 124

Query: 425 IRHWLPELNNVPTQYIHAPHSWL------DKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           I+ ++PEL NVP +YIH P +         +  + ++YP  ++D   A    +N     +
Sbjct: 125 IKQYVPELANVPKEYIHEPWNMPINVQENSECVIGIHYPERLIDLNVASKRNMNAMRTLR 184

Query: 479 KQ 480
             
Sbjct: 185 NS 186


>gi|323650256|gb|ADX97214.1| cryptochrome 1a isoform 1 [Perca flavescens]
          Length = 278

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 8/152 (5%)

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G W W
Sbjct: 1   IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELLLDADWSVNAGSWMW 60

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------ 448
             S  +    +F  + P   G+R DP G +IR +LP L   P +YI+ P +  +      
Sbjct: 61  -LSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEIVQKAA 119

Query: 449 KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           K  + ++YP P+V+H +A    + +     +Q
Sbjct: 120 KCVIGVHYPKPMVNHAEASCLNIERMKQIYQQ 151


>gi|168016051|ref|XP_001760563.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688260|gb|EDQ74638.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 123/333 (36%), Gaps = 48/333 (14%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYAS 64
            +VW RNDLR+ DN+AL +A  +S   ++ V+   P+ + +           +++F+   
Sbjct: 180 SIVWFRNDLRVHDNEALVSANRDS-LSILPVYCFDPKDYGKSSSGFDKTGPYRANFLLEC 238

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  ++ SL ++G                 L           L+ +++    E++ ++ + 
Sbjct: 239 VANLRSSLRERGSDLIVR----VGSPEAVLVDLAKSVGAEALYVHQEVTYEELQAEEKVA 294

Query: 125 KRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAI 182
             LQ + I  K F  S L     +      M   Y  FR+ +    ++  + +   +  +
Sbjct: 295 AALQEKGIETKYFWGSTLFHLEDLPFKLQDMPSNYGGFREKVQNVAIRDTIEAPQQLKGL 354

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIG-----------EQNALHILRKFCKEKVYYYV 231
              G V P +IP            +               E+ AL  L+KF  E      
Sbjct: 355 PACGNVKPGSIPSIEVLGLNPATNLRKGSVTVGGDGLLGGEEEALQRLQKFALEARSQTS 414

Query: 232 EQR-----------DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF------------- 267
             +            +     + ++SP+L++G LSPR+ +  LK+               
Sbjct: 415 NLKASKSQSESSGDSLYGANFSCKISPWLTMGCLSPRRMFEDLKKSASSASAGAMSALAV 474

Query: 268 -VDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
                    +G    + EL+WR+F+R +   Y 
Sbjct: 475 KASGAGSDDNGLNWLVFELLWRDFFRFITKKYG 507


>gi|258405445|ref|YP_003198187.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM
           5692]
 gi|257797672|gb|ACV68609.1| deoxyribodipyrimidine photolyase [Desulfohalobium retbaense DSM
           5692]
          Length = 469

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 88/452 (19%), Positives = 149/452 (32%), Gaps = 36/452 (7%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58
            +         W+  D R+ DN AL  A        A +I VF   P      G + R  
Sbjct: 18  PSVRGSGPVAYWMSRDQRLHDNWALLQAQHMARTRQAPLIIVFCLVPSY---SGGARRHF 74

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L QV  S ++ GI F        +D    L  +C    +  +     ++    +
Sbjct: 75  DFMLTGLRQVADSAAKLGIPFVLLTG---EDPPGELAGFCRTHAIGTVVM--DFDPLRTK 129

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           +             C   D   ++P            +   P  +  +   +      +P
Sbjct: 130 QQWQHTFAGHWEGECLEVDAHNVVPCRWASEKQEYAARTIRPKLQRQLPEFLDPFPELVP 189

Query: 179 VPAIR---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            P      L          R    P       +  GE+ AL + R+F    +  Y E+R+
Sbjct: 190 HPVPWRGSLLPEPDWEAASRSLAAPEYGPPLSWSSGEETALDLAREFIASGLSAYAEKRN 249

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHL 294
            P     S LSPYL  G ++P++     +    D    P      +L EL I RE   + 
Sbjct: 250 DPTAGAVSGLSPYLHFGQIAPQRVALMAR----DANWAPAESREGFLEELVIRRELAENF 305

Query: 295 MAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
             + P          W ++       +  +  +  + W+   T  P+ +AA +++   G 
Sbjct: 306 CFYNPVYDCFGGLPAWAQQTLDDHRGDHREVVYTFEQWEAARTHDPLWNAAQQEMVQTGK 365

Query: 349 MHNRLRMITASFLVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAASTGNDS--- 402
           MH  +RM  A  +++                    LDG   +   G  W+    +D    
Sbjct: 366 MHGYMRMYWAKKILEWSASPEEALSTAITLNDRYELDGRDPNGYTGVLWSIGGVHDRPWK 425

Query: 403 ----VPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
                   R  N     ++FD Q  +IR + P
Sbjct: 426 ERPVYGKVRYMNDRGAARKFDVQA-YIRRFFP 456


>gi|160334828|gb|ABX24822.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334846|gb|ABX24831.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334856|gb|ABX24836.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334862|gb|ABX24839.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334910|gb|ABX24863.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334912|gb|ABX24864.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334914|gb|ABX24865.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334916|gb|ABX24866.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334920|gb|ABX24868.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765937|gb|ACX49999.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765939|gb|ACX50000.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 155

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 94/154 (61%), Gaps = 6/154 (3%)

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             + W+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LL
Sbjct: 2   YFKGWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH
Sbjct: 62  DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121

Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469
            P +  +        +L  NYP PIV   +A   
Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155


>gi|260765945|gb|ACX50003.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 155

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 66/154 (42%), Positives = 94/154 (61%), Gaps = 6/154 (3%)

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             + W+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LL
Sbjct: 2   YFKXWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH
Sbjct: 62  DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121

Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469
            P +  +        +L  NYP PIV   +A   
Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155


>gi|160334784|gb|ABX24800.1| cryptochrome 1 [Capsella rubella]
 gi|160334786|gb|ABX24801.1| cryptochrome 1 [Capsella rubella]
 gi|160334788|gb|ABX24802.1| cryptochrome 1 [Capsella rubella]
 gi|160334790|gb|ABX24803.1| cryptochrome 1 [Capsella rubella]
 gi|160334792|gb|ABX24804.1| cryptochrome 1 [Capsella rubella]
 gi|160334794|gb|ABX24805.1| cryptochrome 1 [Capsella rubella]
 gi|160334796|gb|ABX24806.1| cryptochrome 1 [Capsella rubella]
 gi|160334798|gb|ABX24807.1| cryptochrome 1 [Capsella rubella]
 gi|160334800|gb|ABX24808.1| cryptochrome 1 [Capsella rubella]
 gi|160334802|gb|ABX24809.1| cryptochrome 1 [Capsella rubella]
 gi|160334804|gb|ABX24810.1| cryptochrome 1 [Capsella rubella]
 gi|160334806|gb|ABX24811.1| cryptochrome 1 [Capsella rubella]
 gi|160334808|gb|ABX24812.1| cryptochrome 1 [Capsella rubella]
 gi|160334810|gb|ABX24813.1| cryptochrome 1 [Capsella rubella]
 gi|160334814|gb|ABX24815.1| cryptochrome 1 [Capsella rubella]
 gi|160334816|gb|ABX24816.1| cryptochrome 1 [Capsella rubella]
 gi|160334818|gb|ABX24817.1| cryptochrome 1 [Capsella rubella]
 gi|160334820|gb|ABX24818.1| cryptochrome 1 [Capsella rubella]
 gi|160334822|gb|ABX24819.1| cryptochrome 1 [Capsella rubella]
 gi|160334824|gb|ABX24820.1| cryptochrome 1 [Capsella rubella]
 gi|160334826|gb|ABX24821.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334830|gb|ABX24823.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334832|gb|ABX24824.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334834|gb|ABX24825.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334836|gb|ABX24826.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334838|gb|ABX24827.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334840|gb|ABX24828.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334842|gb|ABX24829.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334844|gb|ABX24830.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334848|gb|ABX24832.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334850|gb|ABX24833.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334852|gb|ABX24834.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334854|gb|ABX24835.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334858|gb|ABX24837.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334860|gb|ABX24838.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334864|gb|ABX24840.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334866|gb|ABX24841.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334868|gb|ABX24842.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334870|gb|ABX24843.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334872|gb|ABX24844.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334874|gb|ABX24845.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334876|gb|ABX24846.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334878|gb|ABX24847.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334880|gb|ABX24848.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334882|gb|ABX24849.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334884|gb|ABX24850.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334886|gb|ABX24851.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334888|gb|ABX24852.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334890|gb|ABX24853.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334892|gb|ABX24854.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334894|gb|ABX24855.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334896|gb|ABX24856.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334898|gb|ABX24857.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334900|gb|ABX24858.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334902|gb|ABX24859.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334904|gb|ABX24860.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334906|gb|ABX24861.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334908|gb|ABX24862.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334918|gb|ABX24867.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334922|gb|ABX24869.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334924|gb|ABX24870.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334926|gb|ABX24871.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334928|gb|ABX24872.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334930|gb|ABX24873.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334932|gb|ABX24874.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334934|gb|ABX24875.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334936|gb|ABX24876.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334938|gb|ABX24877.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334940|gb|ABX24878.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334942|gb|ABX24879.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334944|gb|ABX24880.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334946|gb|ABX24881.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334948|gb|ABX24882.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334950|gb|ABX24883.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334952|gb|ABX24884.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334954|gb|ABX24885.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334956|gb|ABX24886.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334958|gb|ABX24887.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334960|gb|ABX24888.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334962|gb|ABX24889.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334964|gb|ABX24890.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334966|gb|ABX24891.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334968|gb|ABX24892.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334970|gb|ABX24893.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334972|gb|ABX24894.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334974|gb|ABX24895.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334976|gb|ABX24896.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334978|gb|ABX24897.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334980|gb|ABX24898.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334982|gb|ABX24899.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334984|gb|ABX24900.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334986|gb|ABX24901.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334988|gb|ABX24902.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334990|gb|ABX24903.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334992|gb|ABX24904.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334994|gb|ABX24905.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334996|gb|ABX24906.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160334998|gb|ABX24907.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335000|gb|ABX24908.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335002|gb|ABX24909.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335004|gb|ABX24910.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335006|gb|ABX24911.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335008|gb|ABX24912.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765935|gb|ACX49998.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765943|gb|ACX50002.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765947|gb|ACX50004.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765949|gb|ACX50005.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|260765951|gb|ACX50006.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 155

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 6/154 (3%)

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LL
Sbjct: 2   YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH
Sbjct: 62  DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121

Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469
            P +  +        +L  NYP PIV   +A   
Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155


>gi|160334812|gb|ABX24814.1| cryptochrome 1 [Capsella rubella]
          Length = 155

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/154 (43%), Positives = 95/154 (61%), Gaps = 6/154 (3%)

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             +AW+QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LL
Sbjct: 2   YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D DL S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH
Sbjct: 62  DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121

Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH 469
            P +  +        +L  NYP PIV   +A   
Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVXLDEAKAR 155


>gi|226326775|ref|ZP_03802293.1| hypothetical protein PROPEN_00635 [Proteus penneri ATCC 35198]
 gi|225204612|gb|EEG86966.1| hypothetical protein PROPEN_00635 [Proteus penneri ATCC 35198]
          Length = 158

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 95/152 (62%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            VHLVW R+DLR+TDNKAL+ AC +  A+V A+F  TPEQW+ H ++     FI+ +LL 
Sbjct: 5   PVHLVWFRHDLRVTDNKALFHACQDKQAQVHAIFTVTPEQWKAHNMALSCQAFIHNALLD 64

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +  SL++  I         + ++ + +  YC Q  VT LF+N QY +NE RRDK + + L
Sbjct: 65  LSTSLAKLNIPLTIVISDTYSNAADKVAEYCQQHHVTALFFNHQYALNEQRRDKKVTELL 124

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYT 159
           +++    ++ D+V +PPG+++    +M+KV+ 
Sbjct: 125 KNKTTVYTYHDNVFIPPGNVVTQQGEMFKVFY 156


>gi|317151798|ref|YP_004119846.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942049|gb|ADU61100.1| deoxyribodipyrimidine photolyase [Desulfovibrio aespoeensis Aspo-2]
          Length = 450

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/449 (18%), Positives = 142/449 (31%), Gaps = 38/449 (8%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK--VIAVFIATPEQWRQHGISARQSHF 60
           A  A    L W+  + R+ DN  L  A   +  +  ++ VF   P          RQ  F
Sbjct: 14  APLAAGPILYWMSREQRVRDNWGLLHAREMAGQEHALVVVFCLAPAFLGATL---RQYDF 70

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           + + L QV+  L+  GI F   Q        + +     +     +     ++   V++ 
Sbjct: 71  MLSGLAQVEGDLAALGIPFVLLQGDPG----QEIPRLAAELGAGGVVT--DFDPLRVKQG 124

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
                     V     D   ++P   +        +   P    LI   ++      P  
Sbjct: 125 WQGAAAHALPVSFIEVDGHNVVPARQVSPKQEYAARTIRPKIHRLIGEYLEEFPPLEPQV 184

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRD 235
           A       T             A+D          GE  A   L +F  ++++ Y  QR+
Sbjct: 185 APAPPCAATARAAHWGEVRAGLAVDGAVGPVSLVPGEDAAHDALDRFVADRLHVYAGQRN 244

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P   GTS+LS Y   G L+P++              + +  A      ++ RE   +  
Sbjct: 245 DPNADGTSRLSAYFHFGQLAPQR-----AALAAAASGRGEGQAAYLEELVVRRELADNFC 299

Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWM 349
              P      G P        E   D       ++      TG  + +AA  +L   G+M
Sbjct: 300 LHNPQYDSLAGAPAWALKTLGEHRADPRAHCYTRETFEQARTGSRLWNAAQNELRQTGFM 359

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV--- 403
           H  +RM  A  +++                    LDG   +   G  W+ +  +D     
Sbjct: 360 HGYMRMFWAKKILEWSATPEEAHATALALNDRYQLDGRDPNGYVGILWSLAGLHDRPWQT 419

Query: 404 ----PYFRIFNPTIQGKRFDPQGTFIRHW 428
                  R  N     ++FD    +I  W
Sbjct: 420 RPVFGSVRFMNENGCRRKFDVD-KYIERW 447


>gi|78355226|ref|YP_386675.1| deoxyribodipyrimidine photo-lyase type II [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217631|gb|ABB36980.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 487

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 85/472 (18%), Positives = 154/472 (32%), Gaps = 43/472 (9%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQS 58
           +   A +  L W+  ++R  DN AL  A   + A    +  VF   P+         R  
Sbjct: 17  RGHAAGAPVLYWMHREMRARDNWALLHAQQCAAAGGAPLAVVFCLVPQFI---DAGLRHF 73

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEV 117
           HF+   L +  + L + GI     + +      E +  +      +++  +     I   
Sbjct: 74  HFMLQGLEETARILEELGIPLFLLRGTP----PEEVVRFAQAHGASRVVTDFDTLRIKRQ 129

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
                +E   Q  +     D   ++P     +      +   P    L+   +       
Sbjct: 130 WIRSAVEAARQLDIAVDVVDSRNVVPCLRASDKREYAARTIRPKIHRLLDEYLDPLPALQ 189

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAI---DPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           P           P            A        P GE  AL  L  F + +++ Y  +R
Sbjct: 190 PAAVPWKGAYQRPDWQAALDSLQADASVQPAGWLPPGENAALAELTAFIRVRMHRYAAER 249

Query: 235 DIPAIQGTSQLSPYLSIGVLSP-RQCWNRLKEEFVDLLIKPKSGAFSWLNELI------- 286
           + P +   S LSPYL  G+LS  R     ++ +          GA +++ EL+       
Sbjct: 250 NNPLMPVLSHLSPYLHFGMLSAQRAVLEVMQAQGTAAGGTYGEGAAAFVEELVVRRELAD 309

Query: 287 ---WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
              W E     +  +P   +        ++  +  D   L   ++  T  P+ +AA +++
Sbjct: 310 NFCWYEPSYDSVEAFPDWALKTLDRHRADRRPYLYDEQQL---EKARTHDPLWNAAQQEM 366

Query: 344 NTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
              G MH  +RM  A       +      RI         LDG  ++   G  W+    +
Sbjct: 367 VLTGKMHGYMRMYWAKKILEWTESPEEALRIVIRQNDRWSLDGRDSNGYAGAAWSVGGVH 426

Query: 401 DSV-------PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           D            R  +      +FD  G     ++  +  +    + AP S
Sbjct: 427 DRPWREREVFGTIRFMSYNGARSKFDVDG-----YVAAVAALENHPVPAPVS 473


>gi|21673346|ref|NP_661411.1| DNA deoxyribodipyrimidine photolyase, class II [Chlorobium tepidum
           TLS]
 gi|21646440|gb|AAM71753.1| DNA deoxyribodipyrimidine photolyase, classII [Chlorobium tepidum
           TLS]
          Length = 459

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 146/436 (33%), Gaps = 40/436 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64
              + W+  D R+  N AL  AC  ++     +  VF  +P          R   F++  
Sbjct: 23  GPVIYWMSRDQRVRHNWALLFACQKANQLGQPLEVVFTLSPSFLGAP---MRHYDFMFRG 79

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +V+  L + G+ F       + +  E L  Y  ++    +     +   ++ R   L 
Sbjct: 80  LREVETRLRELGVPFTVL----YGEPGETLPKYTEKRNAGVVVA--DFSPLKLVRGWKLA 133

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIR 183
              Q        D   ++P            +   P   AL  + L       L      
Sbjct: 134 VAQQLSCAFYEVDAHNIVPCWLASPKQEYAARTIRPKLNALQGEFLTGFPEPELRHQPDT 193

Query: 184 LTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           L  PV  + +      D   +A+ P    GE  A   LR F   ++  Y ++R+ P    
Sbjct: 194 LPPPVQWNAMETLLKVDRSIKAV-PGLEPGETAAEARLRSFVTGRLSRYADERNDPNSGA 252

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS-GAFSWLNEL-IWREFYRHLMAFYP 299
            S LSPYL  G LS +         F     K       +++ EL I RE   +   +  
Sbjct: 253 VSGLSPYLHFGQLSAQ------HATFEAARSKASEVNREAFVEELFIRRELSENYCYYNE 306

Query: 300 SVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                     W +K       +     +  + +++  T  P+ +AA  QL   G +H  +
Sbjct: 307 RYDSFDGIPEWAKKTLMEHAGDHRDAIYTPEQFERAQTHDPLWNAAQTQLLETGIIHGYM 366

Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS-------V 403
           RM  A  +++         +   M      LDG   +   G  W+    +D         
Sbjct: 367 RMYWAKKILEWSATPAAAFDIALMLNDRYALDGRDPNGYVGVAWSIGGLHDRPWTERPVY 426

Query: 404 PYFRIFNPTIQGKRFD 419
              R  N     ++FD
Sbjct: 427 GTIRYMNSNGCKRKFD 442


>gi|167009787|ref|ZP_02274718.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 144

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 7/145 (4%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR+    G+MHNR+RMI ASFL+K+ L+ W+ GE++F   L D D ASNN  WQW A  G
Sbjct: 1   MREPWQAGYMHNRVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCG 60

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSL- 454
            D+ PYFRIFNP +Q ++F+    +IR ++PEL  +P + I  P       L +  ++L 
Sbjct: 61  LDAAPYFRIFNPVLQAEKFEAY-EYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLG 119

Query: 455 -NYPLPIVDHKKACHHTLNQYYAAK 478
            NYP PIVD KK+    L  +   K
Sbjct: 120 QNYPKPIVDLKKSRDRALQLHNQIK 144


>gi|170750160|ref|YP_001756420.1| deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656682|gb|ACB25737.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium radiotolerans
           JCM 2831]
          Length = 462

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 142/427 (33%), Gaps = 33/427 (7%)

Query: 23  NKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVF 79
           N AL  A   +   D  V+A F            +AR   F+   L   +  L ++G+ F
Sbjct: 36  NPALELAIEEANRLDLPVVACFGLLDGASGFPEANARHYAFLLQGLADAKAGLEKRGVGF 95

Query: 80  QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS 139
              +CS  + +I         +    L  +R Y   +    + +   ++ R++    +  
Sbjct: 96  VMRKCSPAEIAIAL------AEDAALLVLDRGYLAIQKGWYREIAAAVKTRIV--QVEGD 147

Query: 140 VLLPPGSI--------LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
           V++P  +              ++ +++ PF   L    V+     L + +          
Sbjct: 148 VVVPVETASPKHEYAARTLRPKLNRLWDPFLAPLKPRRVKHSADRLTLKSAIDVSDPEAV 207

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSI 251
                 D     +   F  GE  A   L+ F K+    Y   R++P     S +SPYL  
Sbjct: 208 LAGMTLDREVGPVRR-FTGGETQARKRLKAFLKDGFSGYGAGRNMPEAAAASHMSPYLHF 266

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL--NELIWREFYRHLMAFYPSVCMGKPFIP 309
           G +SP +    ++E  V       +     +   EL     Y           +      
Sbjct: 267 GQISPVEIALAVREAKVGDSDDRGAYLEELIVRRELAMNHVYYTEGYDDYDRAVPDWARK 326

Query: 310 WTEKIEWNKDSHLLQAWK--QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
              +   ++  H     +   G T     +AAMR++   G+MHN+LRM     +++    
Sbjct: 327 TLAEHARDERPHAYSEAQLAAGETHDRYWNAAMREMRETGYMHNQLRMYWGKKILEWSPS 386

Query: 368 DWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG-----KRFD 419
                           LDG   ++     W     +      +IF           K+FD
Sbjct: 387 PREGFARTLRLNNRYFLDGRDPNSFTNVAWVYGLHDRPWQKRKIFGTVRYQSENSLKKFD 446

Query: 420 PQGTFIR 426
            +  ++R
Sbjct: 447 AKA-YVR 452


>gi|118580428|ref|YP_901678.1| deoxyribodipyrimidine photolyase [Pelobacter propionicus DSM 2379]
 gi|118503138|gb|ABK99620.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter propionicus
           DSM 2379]
          Length = 450

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 86/444 (19%), Positives = 143/444 (32%), Gaps = 38/444 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              + W+  D R  DN AL  A        A ++ +F   P          RQ  F+   
Sbjct: 20  GPVVYWMSRDQRAMDNWALLHAQELALERRAPLVVLFTLAPSFLGATL---RQYGFMLRG 76

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +  + L++  I F   +          L S+  + RV  +     ++   V+R     
Sbjct: 77  LAETAQLLAKMNIPFYLLRGEPVG----QLCSFVERNRVGTVVT--DFDPLRVKRVWREG 130

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                 V     D   ++P   + +          P  + L+ + +      +P P    
Sbjct: 131 AARLCGVPFFEVDSHNIVPCRFVSDKQEYGAHTLRPKLRRLLADFLHEFPPLIPHPHAWP 190

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                        D               G + A   LR F  + +  Y  +R+ P   G
Sbjct: 191 VPFQPLDPQGILSDLYMDRSVSELSNPLPGTRAAGERLRSFIAQGLEDYGLRRNDPCCDG 250

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPS 300
            S+LSP+L  G L+P++             +     + ++L+ELI  RE   +      +
Sbjct: 251 QSELSPWLHFGQLAPQRVALETVRT-----LSGSPSSEAFLDELIVRRELSDNFCLHNQA 305

Query: 301 VCMGKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLR 354
               + F  W  K   E   D       ++      T  P+ +AA R L   G MH  LR
Sbjct: 306 YDRLEGFPAWALKTLGEHRHDRREYLYTQEQFQDAETHDPLWNAAQRSLLLGGKMHGYLR 365

Query: 355 MITASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDSV-------P 404
           M  A  +++                    LDG   +   G  W+    +D          
Sbjct: 366 MYWAKKILEWSASPEEALAVAIRLNDRYSLDGRDPNGYAGIAWSMGGVHDRAWGERPVFG 425

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428
             R  N     ++FD    +IR W
Sbjct: 426 KIRYMNDRGCRRKFDVDA-YIRRW 448


>gi|21226954|ref|NP_632876.1| deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1]
 gi|20905266|gb|AAM30548.1| Deoxyribodipyrimidine photolyase [Methanosarcina mazei Go1]
          Length = 464

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 157/459 (34%), Gaps = 54/459 (11%)

Query: 8   SVHLVWLRNDLRITDNKALY---AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              + W+  D R  DN AL    A    ++  V+ VF  T E         RQ  F+   
Sbjct: 19  GPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEA---GIRQYEFMLKG 75

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +++ SLS+K I   + +    +    ++  Y     VT       +    ++ ++ +E
Sbjct: 76  LQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVT------DFSPLRIK-NQWIE 128

Query: 125 KRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTP--FRKALIQNLVQADLRSLPVPA 181
           K +    +     D   ++P              + P  +           +L    V  
Sbjct: 129 KVISGISIPFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTP 188

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEK 226
               G      +    +   +A+ P                F  GE+ A  ++  F  ++
Sbjct: 189 ELSAGAGMVETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIADR 248

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-L 285
           +  Y   R+ P     S LSPYL  G +S ++    +     +          ++L+E L
Sbjct: 249 LDSYGALRNDPTKNMLSNLSPYLHFGQISSQRVVLEV-----EKAESNPGSKKAFLDEIL 303

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           IW+E   +   + P     + F  W +      + +     + L+ ++ G T  P+ +A+
Sbjct: 304 IWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNAS 363

Query: 340 MRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
             +L + G MH  +RM  A       +       I         LDG   +   G  W+ 
Sbjct: 364 QMELLSTGKMHGYMRMYWAKKILEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSI 423

Query: 397 STGNDSV-------PYFRIFNPTIQGKRFDPQGTFIRHW 428
              +D            R  +     ++FD +  +I  +
Sbjct: 424 GGVHDRAWGEREVTGKIRYMSYEGCKRKFDVK-LYIEKY 461


>gi|159463644|ref|XP_001690052.1| cryptochrome DASH2 [Chlamydomonas reinhardtii]
 gi|158284040|gb|EDP09790.1| cryptochrome DASH2 [Chlamydomonas reinhardtii]
          Length = 647

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 99/230 (43%), Gaps = 24/230 (10%)

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM-- 295
            +  +++LSP+ ++G ++PR+ +  ++   V         +              HL+  
Sbjct: 412 GVDSSTKLSPFCALGCITPRRIYQEVEAVRVAAKAAAVPCSVGAEAGGGGGGGAAHLLPA 471

Query: 296 -AFYPSVCMGKPFIPWT-------------------EKIEWNKDSHLLQAWKQGYTGFPI 335
            A    + M      +                    + + W +D  +L  W  G TG P 
Sbjct: 472 PAECDWLAMHLCIRDFWTYTVLKEGLATLDERGIVGQPVSWRRDPEVLARWCSGRTGLPF 531

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWA 395
           +DA MR+L   GWM NR R   AS L KDL  DWR G E F   LLD D+A N   W + 
Sbjct: 532 VDANMRELAATGWMSNRGRQNVASLLAKDLQQDWRWGAELFECLLLDSDVAVNYCNWNYF 591

Query: 396 ASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
           A  GND  P  R F    QG ++D        WLPEL ++P +  HAP S
Sbjct: 592 AGVGND--PRNRRFKTVTQGMQYDEDAVLAATWLPELAHLPPRLRHAPWS 639



 Score = 50.0 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 12/70 (17%)

Query: 18 LRITDNKALYAACHNSDAKVIAVFIATPEQWRQ-----------HGISARQSHFIYASLL 66
          +R+ DN+AL +A  ++DA  +AV I  P                  +   ++ F+   L 
Sbjct: 1  MRLDDNEALTSAVRHADA-TLAVHILDPRDLLPRRPRSEGGLGVPKLGPPRAKFMLEGLN 59

Query: 67 QVQKSLSQKG 76
          ++++ L + G
Sbjct: 60 ELRRQLQELG 69


>gi|78188846|ref|YP_379184.1| DNA photolyase, class 2 [Chlorobium chlorochromatii CaD3]
 gi|78171045|gb|ABB28141.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
           chlorochromatii CaD3]
          Length = 459

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 145/444 (32%), Gaps = 42/444 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
            V + W+  D R+  N AL  A          ++ VF   P          R    ++  
Sbjct: 22  GVVIYWMSRDQRVRHNWALLFARWKAAMLQQPLMVVFTLAPSFLGAPL---RHYDVLFNG 78

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +V+  L    I F   Q        E L  Y +    + +  +             + 
Sbjct: 79  LQEVETELRALNIPFMVLQGEPS----EELPRYAMHHNASMVVADYSPLHLTRCWKNQVA 134

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           + L   V     D   ++P            +   P    L+   +        +P    
Sbjct: 135 EALS--VPLYEVDAHNIVPCRVASPKQEYAARTIRPKINKLLGEFLTPFPELEALPQPLT 192

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             PV    +   F          +   GE  A   L+ F ++K+  Y  QR+ P+++ TS
Sbjct: 193 EPPVNWQKLRSHFHADASVAPVGWLTAGEAGAHATLQCFVQQKLNGYATQRNDPSLEATS 252

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI----WREFYRHLMAFYP 299
           +LSPYL  G +S +    ++K         P+    ++L ELI      + Y H  A Y 
Sbjct: 253 RLSPYLHFGQISTQFVALQVKAAHA-----PQEDKDAFLEELIVRRELSDNYCHYNASYD 307

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQA----WKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
            +  G P            D          ++Q  T  P+ +AA  +L   G +H  +RM
Sbjct: 308 RLS-GIPAWAQETLARHATDPRDYIYSHEAFEQAKTHDPLWNAAQHELLQSGIIHGYMRM 366

Query: 356 ITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS-------VPY 405
             A  +++         E          LDG   +   G  W+    +D           
Sbjct: 367 YWAKKILEWSRTPEEAFEIALWLNDRYALDGREPNGYVGVAWSIGGVHDRPWRERPVYGT 426

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWL 429
            R  N     ++FD     ++ ++
Sbjct: 427 IRYMNANGCARKFD-----VKRYI 445


>gi|167009708|ref|ZP_02274639.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367213|ref|ZP_04983243.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica 257]
 gi|295313747|ref|ZP_06804324.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|134253033|gb|EBA52127.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica 257]
          Length = 164

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 2/165 (1%)

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S+L+ L W   +   +   PS+        + +      +    +AWK G TG+P+IDA
Sbjct: 2   RSFLSRLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTELLNQQCFEAWKTGNTGYPMIDA 61

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            MR L    W++ R+R +  SF    L +DWR+   Y      D +   +    Q    +
Sbjct: 62  CMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAGLFTDYEPGIHYSQVQMQ--S 119

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           G   +   RI+NP  Q     P G FIR WLPEL NV  + IH P
Sbjct: 120 GTTGINSIRIYNPIKQSIDQYPNGEFIRRWLPELENVSNENIHTP 164


>gi|193213030|ref|YP_001998983.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327]
 gi|193086507|gb|ACF11783.1| deoxyribodipyrimidine photolyase [Chlorobaculum parvum NCIB 8327]
          Length = 459

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/434 (18%), Positives = 140/434 (32%), Gaps = 36/434 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64
              + W+  D R+  N AL  A   ++     +  VF   P          R   F++  
Sbjct: 23  GTVIYWMSRDQRVRHNWALLFASQKANQLGQPLEVVFTLAPGFLGAP---MRHYDFMFRG 79

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +V+  L + G++F     + + +  + L  Y   +    L     +   ++ RD   E
Sbjct: 80  LREVETRLRELGVLF----TALYGEPGKTLPEYAASRNAGALVA--DFSPLKLVRDWKQE 133

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIR 183
                       D   ++P            +   P    L +  L       L     +
Sbjct: 134 VAPGLSCTFYEVDAHNIVPCWLASPKQEYAARTIRPKLNTLREEFLTDFPEPELQHQPDK 193

Query: 184 LTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           L  PV    +             P    GE  A   LR F   ++  Y ++R+ P     
Sbjct: 194 LPPPVEWDEMETLLKVDRSVKAVPALEPGEAAAELHLRDFVDGRLSRYADERNDPNSGAV 253

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSV 301
           S LSPYL  G LS +                 ++   +++ EL I RE   +   +    
Sbjct: 254 SGLSPYLHFGQLSAQHAAFEAAR-----SKASEANREAFVEELFIRRELSENYCYYNERY 308

Query: 302 CMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                   W +K       +     +  + ++Q  T  P+ +AA  QL   G +H  +RM
Sbjct: 309 DSFDGIPEWAKKTLLEHTGDRRDAIYTPEQFEQAQTHDPLWNAAQTQLLETGVIHGYMRM 368

Query: 356 ITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS-------VPY 405
             A  +++         +   M      LDG   +   G  W+    +D           
Sbjct: 369 YWAKKILEWSATPAAAFDIALMLNDRYALDGRDPNGYVGVAWSIGGLHDRPWVERPIYGT 428

Query: 406 FRIFNPTIQGKRFD 419
            R  N     ++FD
Sbjct: 429 IRYMNANGCKRKFD 442


>gi|41055064|ref|NP_957358.1| hypothetical protein LOC394039 [Danio rerio]
 gi|32451837|gb|AAH54710.1| Zgc:66475 [Danio rerio]
          Length = 516

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 140/434 (32%), Gaps = 22/434 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  D RI DN AL  +   + A+ + + I      +    + RQ  F+   L +V K
Sbjct: 74  LYWMSRDQRIQDNWALIYSQQLALAEKLPLHICFCLVPKFLDATYRQYAFMLKGLQEVVK 133

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
                 I F         +    L ++     +  +  +       ++    ++K L   
Sbjct: 134 ECKSLDIEFHLLSGEPVHN----LPAFVKSWNIGAVVTDFNPLRISLQWIDTVKKHLPSD 189

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--SLPVPAIRLTGPV 188
           +     D   ++P            +         +Q  +       + P  A R    +
Sbjct: 190 IPFIQVDAHNVVPCWEASTKLEYGARTIRGKITKHLQEFLTDMPLVDTHPYCASRAAKII 249

Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               +    +      +  +   G    + +L  F  ++++ +   R+ P     S LSP
Sbjct: 250 DWEEVLSSLEVDHNVCEVEWAQPGTTGGMFMLESFIDQRLHIFATHRNNPNSDAVSHLSP 309

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           ++  G LS ++   ++K +  +      S     +      + +      Y ++     +
Sbjct: 310 WIHAGQLSAQRVVMQVKRK-KNASESVASFIEEIVVRRELADNFCFYNQNYDNISGAYDW 368

Query: 308 IPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
              T +         L   K+     T   + +AA RQL   G MH  LRM  A  +++ 
Sbjct: 369 AKKTLQEHAKDRRQYLYTKKELESAETHDQLWNAAQRQLLLEGKMHGFLRMYWAKKILEW 428

Query: 365 LLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQ 414
                       Y      LDG   +   G  W+    +D            R  N    
Sbjct: 429 TASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWSICGIHDQGWAERPIFGKIRYMNYAGC 488

Query: 415 GKRFDPQGTFIRHW 428
            ++FD +  F R +
Sbjct: 489 KRKFDVE-QFERKY 501


>gi|156752078|gb|ABU93791.1| cryptochrome 2 [Carassius auratus]
          Length = 164

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 3/166 (1%)

Query: 273 KPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
           K  +   S   +L+WREF+       P     +   P   +I W+K+   L  W +  TG
Sbjct: 1   KTSTPPLSLYGQLLWREFFYTAATTNPRFDKMEG-NPICVRIPWDKNPEALAKWAEAKTG 59

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           FP IDA M QL   GW+H+  R   A FL + DL + W  G + F   LLD D + N G 
Sbjct: 60  FPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGS 119

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
           W W  S  +    +F  + P   G+R DP G FIR +LP L   P 
Sbjct: 120 WMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGDFIRRYLPILRGFPA 164


>gi|195026713|ref|XP_001986318.1| GH21292 [Drosophila grimshawi]
 gi|193902318|gb|EDW01185.1| GH21292 [Drosophila grimshawi]
          Length = 530

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 144/447 (32%), Gaps = 47/447 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 92  VYWMSRDARVQDNWALLFAQRLALKLELPLSVVFCLVPKFLNATL---RHYMFMLGGLQE 148

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LEK 125
           V++      I FQ         ++E L ++ + + +  +     +    + R  +  + K
Sbjct: 149 VEQQCRDLNISFQLLLGP----AVERLPAFVVAEEIGAVVC--DFAPLRLPRQWVTDVVK 202

Query: 126 RLQHRVICKSFDDSVLLPPG-----------SILNHALQMYKVYTPFRKALIQNLVQADL 174
            L   V     D   ++P             +I N        Y      +I++      
Sbjct: 203 ALPRNVPLTQVDAHNIVPLWVTSEKQEYAARTIRNKINSKLSEYLTEFPPVIKHPHGNGQ 262

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           +  PV        +T        D+           G       L +FC  ++ Y+ E+R
Sbjct: 263 KDKPVDWAAAEALLTCDRSVDVVDWA--------KPGYTAGSRQLYEFCTRRLRYFDEKR 314

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           + P     S LSP+L  G +S ++C   ++           +     +      + + + 
Sbjct: 315 NDPTADALSGLSPWLHFGQISAQRCALEVQRYTSMHKASADAFCEEAIVRRELADNFCYY 374

Query: 295 MAFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
              Y S+       +    E     ++  + L+  +Q  T   + ++A  QL   G MH 
Sbjct: 375 NEHYDSLKGLHDWAYQTLQEHRTDERNPCYSLEELEQSRTYDDLWNSAQLQLVKEGKMHG 434

Query: 352 RLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------ 402
            LRM  A           +             LDG   +   G  W+    +D       
Sbjct: 435 FLRMYWAKKILEWTATPELALEYCILLNDKYSLDGRDPNGYVGCMWSIGGLHDQGWRERA 494

Query: 403 -VPYFRIFNPTIQGKRFDPQGTFIRHW 428
                R  N     ++FD    ++  W
Sbjct: 495 IFGKIRFMNYQGCKRKFDVNA-YVMRW 520


>gi|464378|sp|P34205|PHR_CARAU RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|222872|dbj|BAA01987.1| DNA photolyase [Carassius auratus]
          Length = 556

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 150/438 (34%), Gaps = 30/438 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  D R+ DN AL  A   + A+ + + I      R    + RQ  F+   L +V K
Sbjct: 111 LYWMSRDQRVQDNWALIYAQQLALAEKLPLHICFCLVPRYLDATYRQYAFMLKGLQEVAK 170

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
                 I F         +    L S+  + +   +  +       ++  + ++K L   
Sbjct: 171 ECKSLDIQFHLLSGEPGQN----LPSFVEKWKFGAVVTDFNPLRIPLQWIETVKKHLPAD 226

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--SLPVPAIRLTGPV 188
           V     D   ++P            +        L+   +       + P  A R   PV
Sbjct: 227 VPFIQVDAHNVVPCWEASGKLEYGARTIRGKITKLLPEFLTEIPLVDTHPHSASRAAEPV 286

Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               +    +      +  +   G    +++L  F  +++  +   R+ P     S LSP
Sbjct: 287 DWEEVLSSLEVERSVGEVDWAQPGTSGGMNMLESFIDQRLRLFATHRNNPNYDALSHLSP 346

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKP 306
           ++  G LS ++   ++K E             S++ EL + RE   +   + PS      
Sbjct: 347 WIHTGQLSAQRVVKQVKRE-----KNASESVASFIEELVVRRELADNFCFYNPSYDNISG 401

Query: 307 FIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              W +K   +  KDS      K+      T   + +AA RQL + G MH  LRM  A  
Sbjct: 402 AYDWAKKTLQDHAKDSRQYLYTKEQLENAKTHDQLWNAAQRQLVSEGKMHGFLRMYWAKK 461

Query: 361 LVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFN 410
           +++          I         LDG   +   G  W+    +D            R  N
Sbjct: 462 ILEWTASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWSICGIHDQGWAERPIFGKIRFMN 521

Query: 411 PTIQGKRFDPQGTFIRHW 428
                ++FD    F R +
Sbjct: 522 YAGCKRKFDV-AQFERKY 538


>gi|47212597|emb|CAF93039.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 642

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 111/340 (32%), Gaps = 50/340 (14%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            + W R  LR+ DN AL  A   +D+ +  V++  P       +   +  F+  +L  + 
Sbjct: 5   SVHWFRKGLRLHDNPALQEALSGADS-LRCVYVLDPWFAGAANVGINRWRFLLEALEDLD 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDS--------------------------------Y 97
            SL +        +    D     L                                   
Sbjct: 64  CSLKKLNSRLFVVRGQPTDVFPRLLKVGAGPVRSLVFQSADRAGAMIRASCRCLILSVCV 123

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGSIL-NHALQMY 155
             + +VT+L +          RD  + K  Q   V     +   L     I+  +     
Sbjct: 124 PQEWKVTRLTFEYDPRAYGKERDGAIIKMAQQFGVETIVRNSHTLYNLDRIVEMNNNSPP 183

Query: 156 KVYTPFRKALIQ-NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA---------ID 205
             +  F+  + +  L +  L S+    +   G     N  + +  P              
Sbjct: 184 LTFKRFQTIVSRLELPRRPLPSVTQQQMDKCGTPVADNHDQLYSIPSLEELGFRTGGLAP 243

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI----QGTSQLSPYLSIGVLSPRQCWN 261
            ++  GE  AL  LRK  ++KV+    +             + LSPYL  G LS R  + 
Sbjct: 244 AVWRGGESEALERLRKHLEKKVWVSHLEHSRANTCSLYASPAGLSPYLRFGCLSCRVFYY 303

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            L+E ++ L  K  S   S   +L+WREF+       P+ 
Sbjct: 304 NLREHYIRL-CKGCSPPLSLFGQLLWREFFYTAATNNPNF 342



 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 29/137 (21%)

Query: 353 LRMITASFLVK-DLLVDWRIGEEY---------------------FMSQLLDGDLASNNG 390
            R   A FL + DL + W  G +                      F   LLD D + N G
Sbjct: 453 ARRAVACFLTRGDLWISWECGMKVGGAAWSRRRRRRLSARLLPQVFEELLLDADWSVNAG 512

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN 450
            W W  S       +F+ + P   G+R DP G +IR ++P L + P +YI+ P +  +  
Sbjct: 513 SWMW-LSCSAFFQQFFKCYCPVGFGRRTDPSGDYIRRYIPILKDYPNRYIYEPWNAPEAV 571

Query: 451 D------LSLNYPLPIV 461
                  + ++YP P++
Sbjct: 572 QKAANCVVGVDYPRPMI 588


>gi|298364134|gb|ADI79210.1| photolyase [Halococcus hamelinensis]
          Length = 263

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 102/264 (38%), Gaps = 12/264 (4%)

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +++    +G            D  E L     +     +F+N  Y      RD+ +E 
Sbjct: 1   DALREDYRDRGGGLVVAHG----DPAEELPRLADEHGAEAVFWNHDYTGLARERDRRVES 56

Query: 126 RLQHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            L    +  ++F D+V   PG+I  +    Y V++ F K  +    ++        A+R 
Sbjct: 57  ALDDADIDHETFHDAVHHEPGAITTNDGDPYAVFSYFGKKWLDREKESSYPPPNGDALR- 115

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
                  ++P   D  F   D   P  G + A   L  FC+  +  Y  +R+ PA  GTS
Sbjct: 116 ---AGDDDLPTSDDLGFDEPDATPPEAGTEAARDRLDSFCEAAIGEYETEREYPARAGTS 172

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSVC 302
           +LS  L  G +  R+   R+ E          +    ++  EL WREFY  ++ + P V 
Sbjct: 173 RLSQDLKYGTIGIREVSERVAEAADRADGDDVRESIEAYREELAWREFYTQVLRYNPEVV 232

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAW 326
             + +  +   IEW +    L   
Sbjct: 233 T-ENYSSYENPIEWRESDDDLDDG 255


>gi|168053729|ref|XP_001779287.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
           patens]
 gi|162669299|gb|EDQ55889.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
           patens]
          Length = 435

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 127/371 (34%), Gaps = 78/371 (21%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-----SARQSHFIYAS 64
            +VW RNDLR+ DN+AL +A  +S   ++ V+   P  +    +        +  F++  
Sbjct: 56  SIVWFRNDLRLHDNEALVSASRDS-LSILPVYCFDPRDYGNSSLGIDKNGPYRVKFLFEC 114

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR------ 118
           +  ++ SL ++G               E L           L+ +++    E++      
Sbjct: 115 VANLRSSLRERGSDLIVR----IGKPEEVLLDLAKSVGAESLYAHQEVAYGELQEGDFVA 170

Query: 119 -------------------------------RDKLLEKRLQHRVICKSFDDSVLLPPGSI 147
                                          ++K+      + V  K F    L+    +
Sbjct: 171 ISSNSYTPWLSHKGVAVKRSWNALNRGPFQAQEKVAAAFQDNGVETKFFWGGTLVHLEDL 230

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
                 M   Y  FR+ +    V++ + +L  +  +   G + P  IP   +        
Sbjct: 231 PFELDDMPSNYGGFREMVQNLAVRSTIEALQELKGLPACGNIEPGRIPFLQELGLNPAAD 290

Query: 207 MFP-----------IGEQNALHILRKFCKEKVYYYVEQR-------DIPAIQGTSQLSPY 248
           M              GE  AL  L ++  E      + +        +     + ++SP+
Sbjct: 291 MRQEIQTSGGAVLMGGEDEALKKLDRYVLETSSSIAKNKQSETSADSLYGANFSCKISPW 350

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW------------LNELIWREFYRHLMA 296
           L++G LSPR+ +  LK+      + P     +             L EL+WR+F+R +  
Sbjct: 351 LALGCLSPRRMFEDLKKSRSSAGVMPTLPVNTLGTGNEDHRLNWVLFELLWRDFFRFITK 410

Query: 297 FYPSVCMGKPF 307
            Y +    + +
Sbjct: 411 KYGTEEKFREY 421


>gi|119357754|ref|YP_912398.1| deoxyribodipyrimidine photo-lyase type II [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355103|gb|ABL65974.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
           phaeobacteroides DSM 266]
          Length = 468

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 151/449 (33%), Gaps = 37/449 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58
             +      + W+  D R+  N AL  A          ++ VF   P          R  
Sbjct: 25  SCSDKPGAVIYWMSRDQRLNHNWALLFAREKAARKGQPLVVVFALAPSFLDAPF---RHY 81

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L +  K+L +  I F   +     +    +  Y  Q     +     +    + 
Sbjct: 82  DFMLKGLEETSKALERINIPFMLLEGEPDTE----ISRYACQSEAGAVVT--DFSPLNIS 135

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           R+   +      +     D   ++P     +      +   P  +A +   +      LP
Sbjct: 136 RNWKKKAADILDIPLYEVDAHNIVPCWYASDKQEYAARTLRPKLQARLDEFLVPFPTILP 195

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           +PA  +          R      +++ P+     GE  A   L  F K ++  Y   R+ 
Sbjct: 196 LPAPHVHHRSPDWKQVRERLQKDRSVPPVNRIAPGETAAAESLENFIKSRLSGYATARND 255

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLM 295
           P     SQLSPYL  G +S +    R+ E        P+    ++L EL I RE   +  
Sbjct: 256 PNSNALSQLSPYLHFGQISAQHVALRVAESRA-----PQKDKTAFLEELIIRRELSDNFC 310

Query: 296 AFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            + PS    +    W ++       +  +  + +  +++  T   + +AA  +L   G +
Sbjct: 311 NYNPSYDRFEGIPAWAKQTLLLHGQDKREYLYTIDVFEKAATHDKLWNAAQSELVQSGKI 370

Query: 350 HNRLRMITASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDS---- 402
           H  +RM  A  +++         E          LDG   +   G  W+    +D     
Sbjct: 371 HGYMRMYWAKKILEWSSSPPEAFEMAIYLNDRYALDGRDPNGYAGVAWSIGGLHDRPWFE 430

Query: 403 ---VPYFRIFNPTIQGKRFDPQGTFIRHW 428
                  R  N +   ++FD +  +I  +
Sbjct: 431 RPVYGNIRYMNASGCRRKFDVE-RYISRF 458


>gi|294507782|ref|YP_003571840.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
 gi|294344110|emb|CBH24888.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
          Length = 462

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 153/442 (34%), Gaps = 39/442 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+    R   N AL  A H++    + + +           + R   F+   L + ++
Sbjct: 24  LYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFPEATLRHHTFLLEGLQETKQ 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +G+     + +  D ++ +  +  +         +R Y  ++ +    + +    R
Sbjct: 84  RLADRGLKLVVREGAPDDVALAYAGAAAVLV------TDRGYLRHQRQWRARVAEEAPCR 137

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--------SLPVPAI 182
           V  +  +  V++P  ++ + A    +   P     ++  +Q             L + + 
Sbjct: 138 V--EQVEGDVVVPVETVTDKAEYAARTIRPKMHEHLERCLQLPEPVPVETPSLDLDIDSG 195

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           R    +         D    A+  ++P G   A  IL  F  E +  Y E R+       
Sbjct: 196 RSLDDIEAVTDQMDLDRGVGAVSDLYPGGVSEAEAILDDFLAEHLDGYDENRNQIHSHAV 255

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSV 301
           S +S YL  G +SP     +++         P+S   S++ EL + RE   + + F P  
Sbjct: 256 SHMSKYLHYGQISPVWLAQQVRRA-----EGPESDIESYIEELVVRRELTMNHVHFRPDT 310

Query: 302 CMGKPFIPWTEK-------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                 +P   +        +  +  + L   + G T  P  +AAM+++   G+MHN +R
Sbjct: 311 YDSYTCLPEWARESLAEHADDEREYVYSLDELEGGTTHDPYWNAAMKEMRETGYMHNYMR 370

Query: 355 MITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV------PY 405
           M           D    +           LDG   ++     W     +           
Sbjct: 371 MYWGKKILEWSPDPKTAYDRTLRLNNRYFLDGRDPNSFANVAWVFGLHDRGWKERPVYGK 430

Query: 406 FRIFNPTIQGKRFDPQGTFIRH 427
            R  +     ++ DP   ++  
Sbjct: 431 VRYMSQGGLDRKADPDA-YVEK 451


>gi|153831330|ref|ZP_01983997.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39]
 gi|148873186|gb|EDL71321.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39]
          Length = 180

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/159 (36%), Positives = 93/159 (58%), Gaps = 2/159 (1%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + LVW R DLR  DN AL AA ++ D  V A++IATPEQW QH ++  Q+  I+  L ++
Sbjct: 1   MRLVWFRRDLRSFDNTALTAALNSGD-PVAAMYIATPEQWHQHHLAPIQADLIWRRLAEL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L+   +   Y Q ++F  +   +         T++  NR YE++E +RD+  ++ L 
Sbjct: 60  QQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLS 119

Query: 129 HRVICKS-FDDSVLLPPGSILNHALQMYKVYTPFRKALI 166
            + I  S FDD  +LPPGS+     + +KV+TPF++A +
Sbjct: 120 EQGITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWL 158


>gi|147904876|ref|NP_001089127.1| CPD photolyase-like [Xenopus laevis]
 gi|77799777|dbj|BAE46749.1| CPD photolyase-like [Xenopus laevis]
 gi|126631428|gb|AAI33745.1| LOC733427 protein [Xenopus laevis]
          Length = 557

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 146/445 (32%), Gaps = 39/445 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN A   A   +  + + + +      +    + R   F+   L +V +
Sbjct: 122 VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVTFCLVPKFLDATIRHYGFMLKGLQEVAE 181

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              +  I F          + + L ++     +  +  +       ++  + + K L   
Sbjct: 182 ECKELNIPFHLL----IGYAKDILPNFVKDHAIGGVVTDFSPLRVPLQWVEDVGKCLPED 237

Query: 131 VICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGPV 188
           V     D   ++P   + +        +       L Q L +       P         V
Sbjct: 238 VPLVQVDAHNIVPCWVASIKQEYGARTIRRKVHDQLSQFLTEFPPVIKHPYEPKFEAETV 297

Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                 +  +      +  +   G     ++L+ F  E++ ++   R+ P     S LSP
Sbjct: 298 DWDKCYKSLEVDRTVGEVEWAKPGTNAGFNVLQSFISERLKHFNSDRNNPNQNALSNLSP 357

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +   G LS ++    +++       K K    S++ E + R        FY      K +
Sbjct: 358 WFHFGQLSVQRAILEVQKY----RSKFKESVDSFVEEAVVRRELADNFCFY-----NKNY 408

Query: 308 IPWTEKIEWNKDS------------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                  +W K++            + L+  + G T  P+ +AA  Q+   G MH  LRM
Sbjct: 409 DKIEGAYDWAKNTLKDHAKDKRTHLYTLEKLEAGKTHDPLWNAAQLQMVHEGKMHGFLRM 468

Query: 356 ITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-------VPY 405
             A  +++             Y      LDG   +   G  W+    +D           
Sbjct: 469 YWAKKILEWTSSPEEALHFSLYLNDRYELDGRDPNGYVGCMWSICGIHDQGWAERAVFGK 528

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLP 430
            R  N     ++FD    F R + P
Sbjct: 529 IRYMNYQGCKRKFDV-AQFERRYHP 552


>gi|66910424|gb|AAH97079.1| Cry4 protein [Danio rerio]
          Length = 418

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 122/321 (38%), Gaps = 25/321 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYA 63
           +  ++HL   R  LR+ DN +L  A  +S A +  V++      +    + A +  F+  
Sbjct: 2   SHRTIHL--FRKGLRLHDNPSLLGALASSSA-LYPVYVLDRVFLQGAMHMGALRWRFLLQ 58

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           SL  +   L   G        S        L     Q  +T++ Y+ + E    R DK +
Sbjct: 59  SLEDLDTRLQAIGSRLFVLCGST----ANILRELVAQWGITQISYDTEVEPYYTRMDKDI 114

Query: 124 EKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +   Q   +   +     L     I+        +       ++  L + +  +  V   
Sbjct: 115 QTVAQENGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIE 174

Query: 183 RLTGPVTPSNIPRFFDYPFQA-------IDPMFPIGEQNALHILRKFCKEKVY--YYVEQ 233
                VTP ++ R +  P  A        + ++P GE +AL  L K  + + +   + + 
Sbjct: 175 DFQRCVTPVDVDRVYAVPSLAHLGLQVEAEVLWPGGESHALQRLEKHFQSQGWVANFSKP 234

Query: 234 RDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           R IP   +  T+ LSPYLS+G LS R  +++    F  +    ++              Y
Sbjct: 235 RTIPNSLLPSTTGLSPYLSLGCLSVRTFYHKYTRIFCPVRFGRRTDPQGEYLR-----KY 289

Query: 292 RHLMAFYPSVCMGKPFIPWTE 312
             ++  +PS  + +P+    +
Sbjct: 290 LPVLKNFPSQYIYEPWKAPED 310



 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 395 AASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK----- 449
             S       Y RIF P   G+R DPQG ++R +LP L N P+QYI+ P    +      
Sbjct: 256 CLSVRTFYHKYTRIFCPVRFGRRTDPQGEYLRKYLPVLKNFPSQYIYEPWKAPEDVQLSA 315

Query: 450 -NDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
              +  +YP PIV H +A    L      +
Sbjct: 316 GCIIGKDYPRPIVSHIEASQRNLALMRQVR 345


>gi|332703027|ref|ZP_08423115.1| DNA photolyase, FAD-binding protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553176|gb|EGJ50220.1| DNA photolyase, FAD-binding protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 465

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 137/416 (32%), Gaps = 30/416 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              L W+  + R+ DN  L  A     + D  +   +   P+         RQ  F+ A 
Sbjct: 20  GPVLYWMHREHRVNDNWGLLRARELAVDRDVPLAVAYGLAPDYLEA---GLRQYAFLLAG 76

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +V+  L   GI F         D  E +        V  +     ++   ++R  L  
Sbjct: 77  LREVEHGLEAIGIPFFLL----LGDPAEVIPDLARYLAVGAIIT--DFDPLRIKRGWLKR 130

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
              + ++  +  D   ++P  ++        + + P    L+   + A     P      
Sbjct: 131 IAAEVQIAVEEVDSRNIVPCRAVSEKKEWAARTFRPKIHRLLPEFLTAIPTLKPQTVPWN 190

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                             +          GE  A  +L +F  E++  Y   R+ P    
Sbjct: 191 LDWPANDWSQAMDSLKVSSDVGRLSGPRSGELAAGALLAEFTAERLSGYAVGRNDPNGGA 250

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPS 300
           TS+LS +L  G+LS ++    + +        P+    ++L +L + RE   +     P+
Sbjct: 251 TSRLSAHLHFGMLSAQRVALVVIQA-----DAPQEDKDAFLEQLVVRRELAENFCLHEPA 305

Query: 301 VCMGKPFIPWTEKI--EWNKDSHLLQAWK----QGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               + F  W  +       D       +    Q  T  P+ +AA R++   G+MH  LR
Sbjct: 306 YDSAESFPDWARRTLDAHQGDPRPYLYSRDELEQACTHDPLWNAAQREMLATGYMHGYLR 365

Query: 355 MITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           M  A       K       +         LDG   +   G  WA    +D     R
Sbjct: 366 MYWAKKILEWSKSPEEAMAVAVRLNDRWELDGRDPNGYAGLAWAIGGVHDRPWPER 421


>gi|148467519|gb|ABQ65680.1| antennal cryptochrome 1 [Spodoptera littoralis]
          Length = 348

 Score =  150 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 120/351 (34%), Gaps = 37/351 (10%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W R+ LR+ DN +L++A          +FI   E      +   +  ++  +L  + 
Sbjct: 5   SVLWFRHRLRLHDNPSLHSALEEKGFPFFPIFIFDGESAGTKVVGYNRMRYLLEALDDLD 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
               + G      +                +  + KL + +  E     RD  ++   + 
Sbjct: 65  NQFKKHGGRLIMLKGKPNV----VFRRLWEEFGIRKLCFEQDCEPVWRARDDSVKNACKE 120

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-- 186
             V+CK      L  P +++     +  +     +  +  +        PV  +  TG  
Sbjct: 121 IGVVCKEHVSHTLWEPDTVIKANGGIPPLTY---QMFLHTVATIGDPPRPVGEVDFTGVK 177

Query: 187 ----PVTPSNIPRFFDYPFQAID------------PMFPIGEQNALHILRKFCKEKVY-- 228
               P +  N    FD   +  D              +  GE  AL  +++    +    
Sbjct: 178 FGSLPESFYNEFTVFDKTPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLAVEYETF 237

Query: 229 ---YYVEQRDIPAIQGTS-QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWL 282
               Y+     P + G    LSP L  G LS R  +  +++ F  +       + A  ++
Sbjct: 238 LRGSYLPTHGNPDLLGPPISLSPALRFGCLSVRSFYWSVQDLFRQVHQGRLTSNSASHFI 297

Query: 283 -NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS-HLLQAWKQGYT 331
             +LIWRE++  +    P+        P    I W   +   LQ W +G T
Sbjct: 298 TGQLIWREYFYTMSVNNPNYG-QMAGNPICLDIPWKTPAGDELQRWVEGRT 347


>gi|325971354|ref|YP_004247545.1| DNA photolyase FAD-binding protein [Spirochaeta sp. Buddy]
 gi|324026592|gb|ADY13351.1| DNA photolyase FAD-binding protein [Spirochaeta sp. Buddy]
          Length = 459

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 153/450 (34%), Gaps = 39/450 (8%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M    A S  + W++   R+  N+AL  A   ++A    + +    +    G   R   F
Sbjct: 13  MPVNKAGSFVVYWMQAAQRVRQNEALAFAIEQANALGKPLVVFFGLERSFAGAQERHYRF 72

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L +VQ+ L   GI    H         + +        ++ L  +R Y   E +  
Sbjct: 73  MLEGLAEVQQQLRLLGIPLWVHGDGIIPGLAKLVPF------ISVLVTDRAYTRVERQWR 126

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           K +   +         + +V++P  ++ +             +++I    Q      P+ 
Sbjct: 127 KQVASFVSC--PFYEVETNVIVPLEAVSDKEEYSAATLRRKIESMIAYFAQIVAIQKPLV 184

Query: 181 AIRLTGPV--------TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                 P+        T   +          + P    GE  A   L +F + K+  Y  
Sbjct: 185 DGLSEEPLFACVNLGDTAMVLKALALGKMGGVCPHLVGGEIQAHQKLSQFIESKLSGYAI 244

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFY 291
            R+ P+ Q +S LSPYL  G +S    ++ ++E  V+           +L ELI  RE  
Sbjct: 245 HRNDPSQQFSSGLSPYLHFGQISAIDIYHAVREIEVE-------DVPVFLEELIVRRELA 297

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQLNT 345
            + + F P     +    W +K     +             +Q  T  P  +AA ++L  
Sbjct: 298 YNFVWFNPLYDAYEGLPSWAQKSLAFHEQDRRPILYSFAELEQAQTHDPYWNAAQKELTE 357

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS 402
           +G MHN LRM     +++                 +  +DG   +   G  W     +  
Sbjct: 358 LGTMHNYLRMYWGKKILEWSPSPKEAFMRALALNNTYQMDGRDPNGYAGVAWCFGKHDRP 417

Query: 403 V------PYFRIFNPTIQGKRFDPQGTFIR 426
                     R  N     ++F+  G   R
Sbjct: 418 WAERPIFGNIRYMNDKGLERKFNMSGYLAR 447


>gi|89255767|ref|YP_513129.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica LVS]
 gi|89143598|emb|CAJ78782.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica LVS]
          Length = 164

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 2/165 (1%)

Query: 279 FSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            S+L+ L W   +   +   PS+        + +      +    +AWK G TG+P+IDA
Sbjct: 2   RSFLSRLRWHCHFMQKLEDQPSIEYENLHSAYDQLRTELLNQQCFEAWKTGNTGYPMIDA 61

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
            MR L    W++ R+R +  SF    L +DWR+   Y      D +   +    Q    +
Sbjct: 62  CMRALIATRWLNFRMRAMLMSFASYHLWLDWRVTSLYLAGLFTDYEPGIHYSQVQMQ--S 119

Query: 399 GNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           G   +   RI+NP  Q     P   FIR WLPEL NV  + IH P
Sbjct: 120 GTTGINSIRIYNPIKQSIDQYPNVEFIRRWLPELENVSNENIHTP 164


>gi|303245763|ref|ZP_07332046.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ]
 gi|302493026|gb|EFL52891.1| deoxyribodipyrimidine photolyase [Desulfovibrio fructosovorans JJ]
          Length = 453

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 92/450 (20%), Positives = 145/450 (32%), Gaps = 50/450 (11%)

Query: 11  LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R  DN AL  A      S A ++ VF   P      G + RQ  F+ A L +
Sbjct: 22  VYWMSRDQRAADNWALLHAASLAGESGAPLVVVFALAPAY---PGATRRQYAFMLAGLAE 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            + +L    I               +L        V        ++   V+R       +
Sbjct: 79  TEAALRAHSIPLAVLTGEPGFTVPAFL------HSVDAGVCVTDFDPLRVKRVWKAAVAV 132

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                    D   + P                P    L+   ++        PA  L G 
Sbjct: 133 ASPGALVEVDAHNVAPCFLASQKREYAAATLRPKIHRLLPEFLKPFPDLPTFPAANLDG- 191

Query: 188 VTPSNIPRFFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             P +     D  F   DP  P       G   A  +L  F ++++  Y  +R+ P    
Sbjct: 192 FAPVDWRAAAD--FVQADPSVPPVTGIVPGSAAATQVLDDFLRDRLEGYAARRNDPNAGA 249

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPS 300
           TS LSPY   G L+P++      E       + K GA ++L EL + RE   +   + P 
Sbjct: 250 TSGLSPYFHFGQLAPQRAALATLE----ARSRAKEGADAFLEELVVRRELADNFCLYEPE 305

Query: 301 VCMGKPFIPWTEKI---------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
               +    W  K           +  D           T   + +AA RQL+  G +H 
Sbjct: 306 YDSFEALPEWARKTLAAHAADSRPYLYDRETF---AAATTHSALWNAAQRQLSREGRIHG 362

Query: 352 RLRMITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDS------ 402
            +RM  A  +++         E          LDG   +   G  W+    +D       
Sbjct: 363 YMRMYWAKKILEWSGSPREALETALFLNDRFALDGRDPNGVVGVLWSVGGLHDRPWANRP 422

Query: 403 -VPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
                R  N     ++FD    ++  + PE
Sbjct: 423 VYGQVRYMNERGCRRKFDVDA-YVARY-PE 450


>gi|320355418|ref|YP_004196757.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus
           propionicus DSM 2032]
 gi|320123920|gb|ADW19466.1| Deoxyribodipyrimidine photo-lyase type II [Desulfobulbus
           propionicus DSM 2032]
          Length = 451

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 140/451 (31%), Gaps = 39/451 (8%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSH 59
           A       L W+    R  DN AL  A   +    + +   F   P          RQ  
Sbjct: 5   AVHTSGPVLYWMHRAFRSRDNWALLHAAQQARYLGVPLAVAFCLAPTFLDATL---RQYD 61

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F    L +  +SL++  I          ++ +            T       ++   V+R
Sbjct: 62  FFLNGLEETARSLAEANIPLILRSGDPAEEMVRLCTELTPALVAT------DFDPLRVKR 115

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL--VQADLRSL 177
             L       R      D   ++P     +    M K + P     +Q+   V   L+  
Sbjct: 116 QWLRTVTGHVRCPVHEVDSRNIVPAWIASDRREFMAKTFRPRIHRHLQDFLTVVPPLQPH 175

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRDI 236
           P     L G +    +              +P  GE  A   L  F +E++  Y  QR+ 
Sbjct: 176 PHAWPTLPGSLDFPALRARLRVDRSVQPVSWPRSGEAAAWDTLDTFLRERLAGYG-QRND 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLM 295
           P     S LSP+L  G++S       +    +   +       S++ EL + RE   +  
Sbjct: 235 PNQSVCSNLSPFLHFGMISSHAIVLEIGRRGLHGEV-----VDSFIEELVVRRELADNFC 289

Query: 296 AFYPSVCMGKPFIPWTEKI--EWNKDSHLLQA----WKQGYTGFPIIDAAMRQLNTIGWM 349
              P       F  W ++       D          + +  T  P+ +AA  QL   G M
Sbjct: 290 LHTPDYDQISGFPEWAQRTLARHRHDPRPYVYDDAQFDRAQTHDPLWNAAQHQLVASGKM 349

Query: 350 HNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS---- 402
              +RM  A       +D     RI         LDG   +   G  W+    +D     
Sbjct: 350 AGYMRMYWAKKILEWSEDPAEALRIAIWLNDRYALDGRETNGYSGIAWSIGGVHDRGWTE 409

Query: 403 ---VPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
                  R  +     ++FD    +I  W P
Sbjct: 410 RPIFGTIRSMSEAGCRRKFDVN-RYIHTWTP 439


>gi|224004440|ref|XP_002295871.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|209585903|gb|ACI64588.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 571

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 109/255 (42%), Gaps = 20/255 (7%)

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS- 276
            L+ F +             +   +S+LS  L++G LSPRQ +  +K E   L     S 
Sbjct: 304 QLKLFVRHHAATAERNLCDVSGSHSSKLSVPLALGTLSPRQIYRYVKSEQEQLGNTTTSP 363

Query: 277 -GAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK-----IEW---NKDSHLLQAWK 327
            G    +N L  R+++                   T        EW   +        W 
Sbjct: 364 DGIAWIINHLEIRDYFLFESFLNGKAAYNLQGRRPTAHKPNVQREWLSLHDGQDAFTRWT 423

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G T  P++DA M +L   G++ NR+R    S L KDL +DWR+G E+F   L D D+A+
Sbjct: 424 SGKTNLPLVDAGMNELIATGYISNRIRQNIVSVLTKDLTIDWRLGAEWFQLALEDHDVAA 483

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-QYIHAPHSW 446
           N G WQ+ A  G D  P  R F    Q  R+D +G F+R W+  L +    + +  P ++
Sbjct: 484 NYGNWQYFAGVGGD--PKNRHFRTVSQAWRYDARGVFVRKWIDRLKDEDDIEVLLRPWAF 541

Query: 447 LDKNDLSLNYPLPIV 461
            D+         PIV
Sbjct: 542 RDE-------WAPIV 549



 Score = 70.8 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 64/187 (34%), Gaps = 37/187 (19%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI----------------- 53
           L+W R DLR+ DN+      +++ AK+ ++F+     +                      
Sbjct: 6   LIWHRRDLRLADNE-----LYSNAAKIYSLFVFDTADYTPRSTGISAGGDRGDDYVYNVN 60

Query: 54  -SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
                +  +  ++  ++ +L   G            + +E + S   + +V ++ ++   
Sbjct: 61  NGPHFTRRLLEAVHSLRNNLRDLGGDLIVRHG----NPLEIIPSLAKELQVEEVAWSEVP 116

Query: 113 EINEVRRDKLLEKRL---------QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
              E  + + L++ L           R IC S   + L+ P  +        ++  P  K
Sbjct: 117 GYYEWVQSEKLKQILMDGADEGYAHRRKICTSV-TTTLMHPDDLPKDQPTWERLARPKEK 175

Query: 164 ALIQNLV 170
              Q   
Sbjct: 176 RKKQKPA 182


>gi|83816766|ref|YP_445872.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
 gi|83758160|gb|ABC46273.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
          Length = 462

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 152/442 (34%), Gaps = 39/442 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+    R   N AL  A H++    + + +           + R   F+   L + ++
Sbjct: 24  LYWMEQSQRAQHNPALERALHHASETGLPLLVVCGVTDDFPEATLRHHTFLLEGLQETKQ 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +G+     + +  D ++    +  +         +R Y  ++ +    + +    R
Sbjct: 84  RLADRGLKLVVREGAPDDVALAHAGAAAVLV------TDRGYLRHQKQWRARVAEEAPCR 137

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR--------SLPVPAI 182
           V  +  +  V++P  ++ + A    +   P     ++  +Q             L + + 
Sbjct: 138 V--EQVEGDVVVPVETVTDKAEYAARTIRPKIHEHLERCLQLPEPVPVETPSLDLDIDSG 195

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           R    +         D    A+  ++P G   A  IL  F  E +  Y E R+       
Sbjct: 196 RSLDDIAAVTDQMDLDRGVGAVSDLYPGGVSEAEAILDDFLAEHLDGYDENRNQIHSHAV 255

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSV 301
           S +S YL  G +SP     +++         P+S   S++ EL + RE   + + F P  
Sbjct: 256 SHMSKYLHYGQISPVWLAQQVRRA-----EGPESDIESYIEELVVRRELTMNHVHFRPDT 310

Query: 302 CMGKPFIPWTEK-------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                 +P   +        +  +  + L   + G T  P  +AAM+++   G+MHN +R
Sbjct: 311 YDSYTCLPEWARESLAEHADDEREYVYSLDELEGGTTHDPYWNAAMKEMRETGYMHNYMR 370

Query: 355 MITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV------PY 405
           M           D    +           LDG   ++     W     +           
Sbjct: 371 MYWGKKILEWSPDPKTAYDRTLRLNNRYFLDGRDPNSFANVAWVFGLHDRGWKERPVYGK 430

Query: 406 FRIFNPTIQGKRFDPQGTFIRH 427
            R  +     ++ DP   ++  
Sbjct: 431 VRYMSQGGLDRKADPDA-YVEK 451


>gi|261047492|gb|ACX54505.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 166

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 62/166 (37%), Positives = 95/166 (57%), Gaps = 1/166 (0%)

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
             +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW
Sbjct: 2   ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           +QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL 
Sbjct: 61  RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R WLPEL
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPEL 166


>gi|294670537|ref|ZP_06735417.1| hypothetical protein NEIELOOT_02259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307816|gb|EFE49059.1| hypothetical protein NEIELOOT_02259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 235

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 109/245 (44%), Gaps = 28/245 (11%)

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           ++  Y  Q   PA +G SQLS +   G LS R+    ++E           G  +WL+  
Sbjct: 8   RLSDYPLQGGFPAKKGVSQLSAHFCFGTLSVREVCRNIRE--------SGQGGAAWLDGP 59

Query: 286 IWREFYRHLMAFYPSVCM-----GKPFIPWTEK----IEWNKDSHLLQAWKQGYTGFPII 336
             R + R  + F   +       G+  + W +      E ++    L  W++G TG PII
Sbjct: 60  ARRAYCRRALPFSDGLLELTMKGGRAALHWLQLPKMIREPDRGGEALMRWQEGRTGVPII 119

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           DAAMR LN  G +H  LR + A FL   L +    GE  F ++L D + A N+  WQ   
Sbjct: 120 DAAMRALNGGGSLHPALRRLCADFLTGRLNISAAHGEACFAARLTDYEYAVNHHNWQ--- 176

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNY 456
                     R+ NP  +    DP G FIR  LPEL ++P   +H PH     +  +  Y
Sbjct: 177 -------QVGRLNNPFAESLNLDPDGRFIRRHLPELAHLPASALHTPH-LAGSDVETNGY 228

Query: 457 PLPIV 461
           P P V
Sbjct: 229 PPPCV 233


>gi|158333885|ref|YP_001515057.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
 gi|158304126|gb|ABW25743.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
          Length = 465

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 154/439 (35%), Gaps = 34/439 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++     V +         G + R   F+   L   ++
Sbjct: 26  LYWMQQSQRAEYNHALEYAIQRANDLQQPVVVCFGLMADYPGSNLRHYTFMLEGLQDTEQ 85

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L Q+GI F     +    ++E           + +  +R Y   + +    + +    +
Sbjct: 86  ALIQRGIKFVMRYGNPDQIALELGK------DASLVVCDRGYLRFQRQWRDNVAQNAPCQ 139

Query: 131 VICKSFDDSVLLPPGSI------LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           V+    +  V +   S+           ++++    F        VQ     L + ++ L
Sbjct: 140 VVQVESEVVVPVETASVKADYAARTIRPRIHRHLDRFLVPFASTPVQHSSLHLDLKSLDL 199

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +  +         D     +  +F  G   A  IL KF ++    Y + R+ P     S 
Sbjct: 200 SN-IEAVLAKLPLDCSVPPVSSLFQGGTTRAKEILEKFLQKSFAIYADHRNQPQTDDVSY 258

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCM 303
           +S YL  G +SP     +++     +   P+    +++ ELI  RE   +   + P    
Sbjct: 259 MSQYLHFGQISPLYLALQIQ----SMGNVPRDNVDTYIEELIVRRELAMNFAYYTPDYDA 314

Query: 304 GKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                 W +      + +     + L+   +  T  P  +AAMR++   G+MHN +RM  
Sbjct: 315 YSCLPNWAKTTLDNHRHDPRTPCYSLEQLDESRTEDPYWNAAMREMKHTGYMHNYMRMYW 374

Query: 358 ASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
                   +   + ++   +      +DG  A++  G  W     +       IF     
Sbjct: 375 GKKIIEWTETPELAFQTALDLNNKYFIDGRDANSYTGVAWVFGVHDRGWRERPIFGTVRY 434

Query: 415 G------KRFDPQGTFIRH 427
                  ++ D  G +I+ 
Sbjct: 435 MAASGLKRKCDIDG-YIKK 452


>gi|194757449|ref|XP_001960977.1| GF13637 [Drosophila ananassae]
 gi|190622275|gb|EDV37799.1| GF13637 [Drosophila ananassae]
          Length = 538

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 144/438 (32%), Gaps = 31/438 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 99  IYWMSRDGRVQDNWALLFAQRLALKLELPLAVVFCLVPKFLNAT---IRHYKFMMGGLQE 155

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LEK 125
           V++   +  I F          +++ +  +   ++V  +     +    V R  +  + K
Sbjct: 156 VEQQCRELDIPFHLLLGP----AVDRIPEFVKSRKVGAVIC--DFAPLRVPRKWVDDVVK 209

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RSLPVPAI 182
            L   V     D   ++P     +      + +       L + L +     +       
Sbjct: 210 ALPKTVPLVQVDAHNVVPVWVASDKQEYAARTIRNKINSKLSEYLTEFPPVVKHPHGTGC 269

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           R   PV  +      +      +  +   G + A   L +FC  ++  + ++R+ P    
Sbjct: 270 RKVDPVDWTAAYEMLECDKSVDEVDWAKPGYKAACKQLYEFCSRRLRQFNDKRNDPLADA 329

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LSP+L  G +S ++C   ++          ++     +      + + +    Y S+
Sbjct: 330 ISGLSPWLHFGQISAQRCALEVQRFRGQHKASAEAFCEEAIVRRELADNFCYYNEHYDSL 389

Query: 302 --CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                  +       +  +D  + L+  ++  T   + ++A  QL   G MH  LRM  A
Sbjct: 390 KGLSSWAYQTLDAHRKDKRDPCYSLEEMEKALTYDDLWNSAQLQLVREGKMHGFLRMYWA 449

Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408
                  +                 LDG   +   G  W+    +D            R 
Sbjct: 450 KKILEWTETPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERSIFGKIRY 509

Query: 409 FNPTIQGKRFDPQGTFIR 426
            N     ++FD     IR
Sbjct: 510 MNYQGCRRKFDVNAFVIR 527


>gi|318041065|ref|ZP_07973021.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. CB0101]
          Length = 251

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 99/261 (37%), Gaps = 17/261 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  +VW R DLR++D+ AL  AC  +   V+ VF+   +       +  +  F+  +L 
Sbjct: 1   MACTVVWFRRDLRLSDHAALSEAC--NQGAVLPVFVLDRDLLFHPETAVARVAFMLNNLQ 58

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLLEK 125
            +   L Q+G            D  E L           +  +   E      RD  + +
Sbjct: 59  ALDADLRQRGGRLLIR----CGDPAEQLLQVVQLSGADGVIAHTDSERLVGRVRDARVSR 114

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L    I   +     + P       +        + +A+    + A  R +  P    +
Sbjct: 115 TLAAHRIPLRW-----VEPAGACGELMAYSGWSRQWHQAMASPALPAPERVVVPPP---S 166

Query: 186 GPVTPSNIPRFFDYPFQA-IDPMFPIGEQNALHILRKFCKE-KVYYYVEQRDIPAIQGTS 243
             +  + +P       +    P+ P G   AL  L +FC+      Y  +   P+ + T+
Sbjct: 167 SALPDTPVPSLEALGLRPDAKPIPPGGTAAALKRLEQFCEGSASRSYYWELSYPSAKVTT 226

Query: 244 QLSPYLSIGVLSPRQCWNRLK 264
            LSPYL  GV+SPRQC  RL 
Sbjct: 227 GLSPYLKFGVISPRQCLQRLA 247


>gi|298530238|ref|ZP_07017640.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509612|gb|EFI33516.1| deoxyribodipyrimidine photolyase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 448

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 146/442 (33%), Gaps = 32/442 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              + W+  D RI DN AL  A     +    +  VF       +      RQ  F+   
Sbjct: 19  GPVIYWMSRDQRIKDNWALVHAQDLALHLSRPLRIVFCLADGFLQA---GLRQFDFMLRG 75

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +         I     +          L +Y  + R + L     ++   +++     
Sbjct: 76  LHECAGVAESLNIPLDLVRGEAGL----VLPAYLEKHRASFLVM--DFDPLRIKKSWQKA 129

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAI 182
              +  +     D   ++P  S         +   P     ++  ++   D++  P PA 
Sbjct: 130 VLDKTGIPAHLVDAHNIVPCWSTSQKQEYAARTIRPKIHRQLEEFLEDYPDVKPHPYPAQ 189

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             TG V P  + +  D         +   G   A  +L  F   ++  Y EQR+ P +Q 
Sbjct: 190 AGTG-VDPDGLLQEMDLDKTITPVRWLSPGPAGAGEVLDDFMAHRLSLYHEQRNDPNMQV 248

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LSPYL  G  S ++   ++K++    +   ++     +      + + H    Y + 
Sbjct: 249 LSNLSPYLHFGHTSAQRVALQVKKQLDTPVQSREAFLEELIVRRELSDNFCHYNQNYDNF 308

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQA----WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
             G P        +   DS          +QG T  P+ +AA  ++   G MH  +RM  
Sbjct: 309 -QGLPAWAQKTLDKHRSDSRDYLYEPQALEQGLTHDPLWNAAQTEMVKSGKMHGYMRMYW 367

Query: 358 ASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFR 407
           A       +                 LDG   +   G  W+    +D            R
Sbjct: 368 AKKILEWSRSPEQAIDTAIYLNDKYELDGRDPNGYTGIMWSIGGVHDRGWKERKIFGTVR 427

Query: 408 IFNPTIQGKRFDPQGTFIRHWL 429
             N     ++F+    +I+ W+
Sbjct: 428 YMNYNGCRRKFNVDA-YIQKWI 448


>gi|110680064|ref|YP_683071.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456180|gb|ABG32385.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 468

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/279 (24%), Positives = 111/279 (39%), Gaps = 26/279 (9%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQC 259
           +  +FP   + AL  L  F  +    Y  +R+     G     S LSPYL   +++  + 
Sbjct: 69  MSQLFPPSHRAALERLTAFVPKAGRDYAARRNYDLGPGNHTHVSTLSPYLRCRLITESEV 128

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF---IPWTEKIEW 316
            N +            + A  ++ E+ WR +++  +   P+V           W +    
Sbjct: 129 VNAVLHRH------SPAAAEKFVQEVFWRTYWKGWLELRPAVWTQYQMALDQAWNDVQTQ 182

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
                  +   +G TG    DA  R+L   G++HN  RM  AS  +  L + W +G ++F
Sbjct: 183 AGLRARWENACRGETGIHCFDAWARELVETGYLHNHARMWFASIWIFTLELPWELGADFF 242

Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQGTFIRHWLPELNN 434
           +  LLDGD ASN  GW+W A        Y  R  N +   + RF P+       +P    
Sbjct: 243 LRHLLDGDPASNTLGWRWVAGIQTQGKTYLARTSNISKFTENRFHPKWQLAGEAIPRHAP 302

Query: 435 VPTQYIHAPHS-----------WLDKNDLSLNYPLPIVD 462
           +P +    P              L + DLS  + L +VD
Sbjct: 303 LPPEPRSLPAGDAFDPALRTGFLLHEEDLSPGFFLNMVD 341


>gi|39997921|ref|NP_953872.1| deoxyribodipyrimidine photolyase [Geobacter sulfurreducens PCA]
 gi|39984866|gb|AAR36222.1| deoxyribodipyrimidine photolyase, putative [Geobacter
           sulfurreducens PCA]
 gi|298506859|gb|ADI85582.1| deoxyribodipyrimidine photolyase, putative [Geobacter
           sulfurreducens KN400]
          Length = 461

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 150/447 (33%), Gaps = 41/447 (9%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
                + W+  D R+ DN AL  A        A +  +F   P         ARQ  F+ 
Sbjct: 16  TAGPVIYWMSRDQRVADNWALIHAQKLALARSAPLGVLFCLAPRFLGAT---ARQYRFML 72

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L QV+ +L++  I F              + ++  + RV+ L     ++   V+R+  
Sbjct: 73  KGLEQVRAALNRLDIPFFLVTGDPKG----AVAAFTRRHRVSYLVT--DFDPLRVKREWK 126

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            +   +  +     D   ++P                P    L+ + ++        P  
Sbjct: 127 RQVAGEISIPFDEVDAHNIVPCWITSQRQEWGAYTIRPKIHRLLPDFMEPFPPLQRHPFP 186

Query: 183 RLTGPVTPSNIPRFF-----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                 + +     F     D     +      GE+ A   L +F ++ +  Y  +R+ P
Sbjct: 187 WQGALPSDAEWRETFTGMTLDESVPEV-SWLASGEEAAQAALARFLEDGLAGYATRRNNP 245

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA 296
           A+ G S LSP+L  G LS      +   +       P     ++L ELI  RE   +   
Sbjct: 246 AVMGQSGLSPWLHFGQLS-----AQRVAQAAFAAAAPIESRDAFLEELIVRRELADNFCY 300

Query: 297 FYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  +      F  W ++       D     +     +QG T   + +AA  ++   G MH
Sbjct: 301 YNDAYDRFDGFPEWAQRTLNRHRHDPRPQCYEHDVLEQGQTHDSLWNAAQLEMVRWGRMH 360

Query: 351 NRLRMITASFLVKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV---- 403
             LRM  A  L++          I  +      LDG   +   G  W+    +D      
Sbjct: 361 GYLRMYWAKKLLEWTSSPEDALMIAIQLNDRYQLDGRDPNGYAGIAWSIGGVHDRPWAER 420

Query: 404 ---PYFRIFNPTIQGKRFDPQGTFIRH 427
                 R  +     ++FD    + R 
Sbjct: 421 PVFGTIRFMSRDGCRRKFDTDA-YERR 446


>gi|320109156|ref|YP_004184746.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4]
 gi|319927677|gb|ADV84752.1| DNA photolyase FAD-binding protein [Terriglobus saanensis SP1PR4]
          Length = 479

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 151/446 (33%), Gaps = 37/446 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W++   R  DN AL  A   +D   + V             + R  HF+   LL V+ 
Sbjct: 35  VYWMQRAQRGRDNAALNLAVQIADELGLPVVTYFAGISNFPHANLRHYHFLQQGLLDVEN 94

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+++GI F           +++         +         + N +R  +     +   
Sbjct: 95  DLAERGIGFVLRNAPE-CSPVQFFADAHAAIVIG--------DENPLRAMERWRSMVAKN 145

Query: 131 VIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           +     + D  V++P   +         +    +K L + L          PA     P 
Sbjct: 146 IEVPYWTIDTDVIVPSKLLEKAQYAARTIRPRLKKFLPEFLHLVKSIDNSAPAKEWQQPR 205

Query: 189 TPSNIPRFFDYPFQAID--------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
              +     D   Q  D          +  G   A   L  F K  +  Y  +R+ P   
Sbjct: 206 GLRHDKLSIDMTKQWPDLDRSVLPVDEWNGGSGAAYKRLHLFTKN-LGNYDRERNHPETD 264

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           GTS LSP+L  G + P      +++          SG       + WRE   + + + P+
Sbjct: 265 GTSMLSPFLHFGHIGPLTIALAVRKAIQTNPAAKVSGEAYLDQLITWRELCINFVKYEPN 324

Query: 301 VCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                   PW +    E  +D     + L+  ++  T   + +A+ RQ+   GWMHN +R
Sbjct: 325 YDTAACADPWAKVTIGEHARDERSPLYSLEQLERAETYDELWNASQRQMVYRGWMHNYMR 384

Query: 355 MITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------P 404
           M  A  +++    + V +           LDG   +  G   WA     D          
Sbjct: 385 MYWAKKILEWSPSVDVAFERAVHLNDRYFLDGRDPNGYGSIAWALVGKFDRAWGERPIFG 444

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLP 430
             R  +    G++FD +  +I    P
Sbjct: 445 KIRYMSGASTGRKFDSK-KYIAQNPP 469


>gi|294102825|ref|YP_003554683.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM
           12261]
 gi|293617805|gb|ADE57959.1| deoxyribodipyrimidine photolyase [Aminobacterium colombiense DSM
           12261]
          Length = 456

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 162/444 (36%), Gaps = 30/444 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
            W+  D R+ DN AL  A   +      ++ VF  TP        S R  HF+   L +V
Sbjct: 20  YWMNRDQRVEDNWALLEAQKYALLNKKPLLVVFCLTPHFL---SASYRAYHFMLHGLHEV 76

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++ L    I F   +     ++   L +   +  V+ LF    +    ++++ + + +  
Sbjct: 77  RQGLLGLNIPFILLE----QEAPLSLPNLIKKIDVSALFT--DFSPLRIKKEWVEQIKKD 130

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQAD-LRSLPVPAIRLTG 186
             +     D   ++P            + + P   K +   L     L   P        
Sbjct: 131 IAIPFYEIDAHNIVPCWEASTKKEYSARTFRPRILKKVPDFLTPIPSLIRHPYNETLALK 190

Query: 187 PVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
              P  +   + YP + + P++    G    +  L+KF K+K+  Y E R+ P     SQ
Sbjct: 191 TAAPLEMLTKYHYPQKTL-PLYGGKAGYTAGMECLQKFIKKKLRVYKELRNDPTNNVLSQ 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCM 303
           LSP+L  G ++P++    +K+   +     +    S+L ELI  RE   +   + PS   
Sbjct: 250 LSPFLHFGQIAPQRVAIVIKKHGEN-HESIRDSVDSFLEELIVRRELADNFCFYTPSYDC 308

Query: 304 GKPFIPWTEKI--EWNKDSHLLQAW----KQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            + F  W +K   E   D           + G T   + +A    +   G +H+ LRM  
Sbjct: 309 FEGFPQWAQKTLDEHRWDPRKFTYTLEELEHGKTHDQLWNACQLDILFHGKLHSWLRMYW 368

Query: 358 ASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-PYFRIFNPTI 413
           A       K      +          +DG   +   G  W+    +D   P  +IF    
Sbjct: 369 AKKILEWSKSPEEAMKAAIYLNDCYEIDGRDPNGYAGIAWSIGGVHDRAWPERQIFGKIR 428

Query: 414 QGKRFDPQGTF-IRHWLPELNNVP 436
                  +  F ++ ++  + + P
Sbjct: 429 YMNDSGAKRKFHVKQYIESITSNP 452


>gi|110596745|ref|ZP_01385035.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM
           13031]
 gi|110341432|gb|EAT59892.1| deoxyribodipyrimidine photolyase [Chlorobium ferrooxidans DSM
           13031]
          Length = 450

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 148/444 (33%), Gaps = 36/444 (8%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIY 62
           A    + W+  D R+  N AL  A   ++     +  VF   P          R   F+ 
Sbjct: 16  ASGPVIYWMSRDQRVRHNWALLFARKKAEQLQQPLKVVFTLAPSFLNAPL---RHYDFML 72

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L +V+++L +  I F   Q     +    L  +  + +   +     +   ++ R+  
Sbjct: 73  KGLHEVERALRRLNIPFYLVQGEPEIE----LPRFAREMKAGAVVT--DFSPLKISREWK 126

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
                   +     D   ++P            + + P  K+L+  L+    +  P+ A 
Sbjct: 127 RRVGAHLPLPLYEVDAHNIVPCRIASAKQEYAARTFRPKIKSLLGELLTGFPQLEPLEAT 186

Query: 183 RLTGPVTPSNI-PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
             + PV  S+I          A       GE+ A + L  F ++++  Y E R+ P    
Sbjct: 187 TESHPVDWSSISCSLKADHRVAPVEWLKPGEEAAANCLDTFLEKRLSSYAELRNDPNSGV 246

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LSPYL  G +S +    R+ E  +     P     ++L ELI R        FY   
Sbjct: 247 LSNLSPYLHFGQISAQYIALRVSESRM-----PDESRSAFLEELIVRRELSDNYCFYNDR 301

Query: 302 CMGKPFIPWTEK---IEWNKDSHLLQA----WKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                  P   K   +    D          +    T   + +AA  +L T G +H  +R
Sbjct: 302 YDSFDGSPTWAKESLMNHRNDHREYLYTADEFATAKTHDRLWNAAQLELVTTGKIHGYMR 361

Query: 355 MITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VP 404
           M  A       +     +           LDG   +   G  W+    +D          
Sbjct: 362 MYWAKKILEWSESAEQAFETAMALNDRYALDGRDPNGYAGVAWSIGGVHDRPWFERPVYG 421

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428
             R  N +   ++FD    +I  +
Sbjct: 422 KIRYMNASGCARKFDV-ARYIARF 444


>gi|195431012|ref|XP_002063542.1| GK19412 [Drosophila willistoni]
 gi|194159627|gb|EDW74528.1| GK19412 [Drosophila willistoni]
          Length = 534

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 136/437 (31%), Gaps = 29/437 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D RI DN AL  A   +   D  +  VF   P+         R   F+   L +
Sbjct: 97  VYWMSRDGRIQDNWALLFAQRLALKLDLPLAVVFCLVPKFLNATL---RHYKFMLGGLKE 153

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LEK 125
           V+K      I F            E L  +     +  +     +    V R  +  + K
Sbjct: 154 VEKECRDLNIGFHLLLGPAR----EELPKFVRDNDIGAVIC--DFAPLRVPRQWVEDVTK 207

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
            L   V     D   ++P     +      +       + +   +         P  + +
Sbjct: 208 GLPKDVPFTQVDAHNIVPLWVASDKQEYAARTIRNKINSKLGEYLTEFPVVAKHPHGKSS 267

Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
             +  ++     +      +  +   G   A   L +FC  ++  +  QR+ P     S 
Sbjct: 268 AKINWTSAYEMLECDKSVDEVEWAQPGYNAACRQLYEFCTRRLGKFHNQRNNPTADALSG 327

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--C 302
           LSP+L  G +S ++C   +K          ++     +      + + +    Y S+   
Sbjct: 328 LSPWLHFGQISAQRCVLEVKRYAKQHKASTEAFCEETIVRRELADNFCYYNENYDSLKGV 387

Query: 303 MGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF- 360
               +       +  +D  + L+  +   T   + ++A  QL   G MH  LRM      
Sbjct: 388 TSWAYQSLDAHRKDPRDPCYKLEDLETARTYDDLWNSAQLQLVKEGKMHGFLRMYWGKKI 447

Query: 361 --LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNP 411
               +                 LDG   +   G  W+    +D+           R  N 
Sbjct: 448 LEWTESPEQALEWTILLNDKYSLDGRDPNGYVGCMWSIGGIHDTAWKERPIFGKVRYMNY 507

Query: 412 TIQGKRFDPQGTFIRHW 428
               ++FD    F+  +
Sbjct: 508 QGCKRKFDVNA-FVARY 523


>gi|242278435|ref|YP_002990564.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM
           2638]
 gi|242121329|gb|ACS79025.1| deoxyribodipyrimidine photolyase [Desulfovibrio salexigens DSM
           2638]
          Length = 445

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 148/447 (33%), Gaps = 36/447 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAA--CHNSDAKVIAVFIATPEQWRQHGISARQSH 59
            A  +    + W+  + R+ DN  L  A         +I VF   P          R   
Sbjct: 14  SAEISGGPIVYWMSREQRVFDNWGLLHARELAGDKVPLIVVFCLVPSFLGATL---RHYD 70

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+   + QV+K L + G  F            E L ++    R   +  +      + + 
Sbjct: 71  FMLNGMQQVEKDLRKLGYDFVLLSGQPD----ETLPAFVSNIRAGAVVTDFDPLRIKQQW 126

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
            + + +++   +     D   ++P   + +      +   P  + L+   ++        
Sbjct: 127 QENVGQKID--IPLLEVDGHNIVPARFVTDKREYGARTIRPKIQRLLPEFLEEFPELASA 184

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                  PV      R      + + P+    GE  A   L +F    +  Y E+R+ P 
Sbjct: 185 EVKGEGFPVVDWKQVRSSIKVDETVGPVDLIPGESAAHAALDEFVTYGLGAYAEKRNDPN 244

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAF 297
            + TS+LS Y   G L+P++    +                S+L EL I RE   +    
Sbjct: 245 AEATSRLSAYYHFGQLAPQRAALEVAAR------PTGESVDSYLEELIIRRELSDNFCLH 298

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            P+         W +K      +         + ++Q  T   + +AA  Q+   G+MH 
Sbjct: 299 TPNYDSLDAAPEWAQKTLSEHSADRRAYLYSYEDFEQARTHSALWNAAQSQMVHSGFMHG 358

Query: 352 RLRMITASFLVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------ 402
            +RM  A  +++          I         LDG   +   G  W+    +D       
Sbjct: 359 YMRMYWAKKILEWSASAEEALSITIALNDRFELDGRDPNGYVGALWSIGGVHDRGWKKRS 418

Query: 403 -VPYFRIFNPTIQGKRFDPQGTFIRHW 428
                R  N     ++FD    ++R W
Sbjct: 419 VFGSIRYMNERGCRRKFDVDA-YVRKW 444


>gi|195401525|ref|XP_002059363.1| GJ17708 [Drosophila virilis]
 gi|194142369|gb|EDW58775.1| GJ17708 [Drosophila virilis]
          Length = 530

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 136/439 (30%), Gaps = 31/439 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 92  LYWMSRDARVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNATL---RHYKFMLGGLQE 148

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD--KLLEK 125
           V++   +  I FQ         + E L  +   + +  +     +    + R     + K
Sbjct: 149 VEQQCHELNISFQLLLGP----AAERLPEFVTAEDIGAVIC--DFAPLRLPRQWVADVVK 202

Query: 126 RLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIR 183
            L   V     D   ++P   +          +       L + L +       P    +
Sbjct: 203 ALPGHVPLTQVDAHNIVPLWVTSEKQEYAARTIRNKINSKLGEFLSEFPPVIRHPHGKGQ 262

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                  +                +   G       L +FC  ++ ++ E+R+ P     
Sbjct: 263 AKESTDWTAAYALLSCDKTVDAVDWAKPGYTAGCRQLYEFCTRRLRHFNEKRNDPTADAL 322

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV- 301
           S LSP+L  G +S ++C   ++           +     +      + + +    Y S+ 
Sbjct: 323 SGLSPWLHFGQISAQRCILEVQRYSAMHKASADAFCEEAIVRRELADNFCYYNEHYDSLK 382

Query: 302 -CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                 +       +  +   + L+  +Q  T   + ++A  QL   G MH  LRM  A 
Sbjct: 383 GLHDWAYQTLQAHRKDKRSPCYTLEELEQARTYDDLWNSAQLQLVKEGKMHGFLRMYWAK 442

Query: 360 F---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIF 409
                 +   +             LDG   +   G  W+    +D            R  
Sbjct: 443 KILEWTETPELALEYSILLNDKYSLDGRDPNGYVGCMWSIGGVHDQGWKERDIFGKIRYM 502

Query: 410 NPTIQGKRFDPQGTFIRHW 428
           N     ++FD    F+  +
Sbjct: 503 NYQGCKRKFDINA-FVMRY 520


>gi|313228121|emb|CBY23271.1| unnamed protein product [Oikopleura dioica]
          Length = 361

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 74/337 (21%), Positives = 122/337 (36%), Gaps = 37/337 (10%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---ARQSHFIYASLL 66
            L   R D R+ DN    AA   SD K+I  FI TPEQ      S        F+  SL 
Sbjct: 7   ALFIFRRDYRLFDNVGWIAAAKASD-KIIPAFIFTPEQIDASKNSYKNDNCVQFMIESLK 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            + K L  K  +F         D I        +  V  ++ N  Y     +RD  +E  
Sbjct: 66  DLDKQLEGKLSLFYGANTVVVADLIS-------EFGVDAVYVNADYTPYSKKRDADIEAI 118

Query: 127 L-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +H+V   S  D  L+ PG I+       K    F   +++   +    +  + + ++ 
Sbjct: 119 CDEHQVPFVSSHDMCLVDPGEIVIKEGT--KFEPSFFNKVMELKTRKSEAAPEISSEKVK 176

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR-----KFCKEKVYYYVEQRD--IPA 238
                 +  +  ++  +        G   AL I+      KF K+        R+   P 
Sbjct: 177 KSEFSIDWKKTKEFYDKNDKIELKGGRSVALKIIEKVKSDKFQKQYGCVPTAFREGTFPK 236

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           ++ T++L+ YL  G +S R+      EEF  L  +        + + I R+++ H+   +
Sbjct: 237 MK-TTELAAYLRFGCVSTREVV----EEFEKLNKR------MLITQTIRRDYWVHMFHNF 285

Query: 299 PSVC----MGKPFIPWTEKIEWNK-DSHLLQAWKQGY 330
           P        GK      E IE    +       + G 
Sbjct: 286 PHQMGIGKPGKCLKLKFEDIECRDGNPSRHGTARHGT 322


>gi|167524661|ref|XP_001746666.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774936|gb|EDQ88562.1| predicted protein [Monosiga brevicollis MX1]
          Length = 884

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 142/453 (31%), Gaps = 32/453 (7%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R TDN AL  A       D  +  VF   P+         RQ  F+   L  
Sbjct: 409 LYWMSRDQRPTDNWALLYARHLAQERDVPLRVVFCLVPKFLEAT---IRQFGFMLDGLQV 465

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE--- 124
           V+  L +K I F          + + L  +  +Q    +          V    + E   
Sbjct: 466 VETHLRKKHIPFHLLTG----YAKDVLPKFAEEQEACAVVC--DMSPLRVPMAWVKETGS 519

Query: 125 KRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           K     V     D   ++P              +     + L   L           +++
Sbjct: 520 KLKDMNVPLYQVDAHNIVPVWHASPKQEYAARTIRNKIHQKLDTCLQPFPELESNSNSVQ 579

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           L   V         +  +   +  +   G +  + +L +F  E+++ Y + R+ P +   
Sbjct: 580 LPDTVDWKKARESLEINWDVKEVDWLKPGYEGGMKMLEEFINERLHRYADDRNDPNLDAL 639

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELIWREFYRHLMAFYPSV 301
           S LSPY   G +S ++    L+ +      +  K+     +      + +      Y SV
Sbjct: 640 SNLSPYYHFGQISVQRVVLELRSKQRGKYAEGVKAYIEEAVVRRELSDNFCFYNHRYDSV 699

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                +   T  +        L   KQ     T   + +A+  QL   G MH  LRM  A
Sbjct: 700 EGASAWAQETLDVHSKDKREHLYTRKQLENAETADDLWNASQLQLVQEGKMHGFLRMYWA 759

Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408
                  +                 LDG   +   G  W+    +D            R 
Sbjct: 760 KKILEWTESPEKALEDAIYLNDKYELDGRDPNGYVGCMWSICGIHDQGWGERPVFGKIRY 819

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
            N     ++FD    F++ + P   N   + IH
Sbjct: 820 MNYKGCKRKFD-IAAFVKRYPPAAKNAAREAIH 851


>gi|13383259|dbj|BAB39480.1| CPD photolyase [Cucumis sativus]
 gi|20387244|dbj|BAB91322.1| CPD photolyase [Cucumis sativus]
          Length = 489

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 84/466 (18%), Positives = 161/466 (34%), Gaps = 39/466 (8%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
            T ++   + W+  D R+ DN AL  A   ++   + V +A     R  G  +RQ  F+ 
Sbjct: 20  GTGSLGPVVYWMFRDQRVKDNWALIHAVDEANRANVPVAVAFNLFDRFLGAKSRQLGFML 79

Query: 63  ASLLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             L Q+Q  + +   I F   Q     ++ + + ++  +   + L  +        +  +
Sbjct: 80  RGLQQLQHDIQETLQIPFFLFQG----EAEQTIPNFIRECGASLLVTDFSPLREVRKCKE 135

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            + KR++  V     D   ++P   + +  L+        +          D  S+ +P 
Sbjct: 136 EICKRVEESVKVHEVDAHNVVPTW-VASEKLEYSAKTLRGKINKKLPDYLIDYPSMVIPT 194

Query: 182 IRLTGPVTPSNIPRFFD----YPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVE 232
            +        +  R  D          +  +   GE+ A+ +L      F  +++  Y  
Sbjct: 195 RKWPSADKFIDWDRLIDDNLRKGADVPELEWCKPGEKAAMEVLMGSKDGFLTKRLKGYAI 254

Query: 233 QRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREF 290
            R+ P    G S LSPYL  G +S ++C    +     +          +L ELI  RE 
Sbjct: 255 DRNNPLKPKGLSGLSPYLHFGQISAQRCALEAR----SIRKLNPQAVDVFLEELIVRREL 310

Query: 291 YRHLMAFYPSVCMGKPFIPWTEK--IEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLN 344
             +   + P          W  K  ++   D       ++      T  P+ +AA  ++ 
Sbjct: 311 ADNYCYYQPHYDSLLGAWEWARKTLMDHASDKREYIYTREQLEKAQTADPLWNAAQLEMA 370

Query: 345 TIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
             G MH  +RM  A       +       I         +DG   +   G  W+    +D
Sbjct: 371 HHGKMHGFMRMYWAKKILEWTRGPEEALEICIYLNDKYEIDGRDPNGYVGCMWSICGVHD 430

Query: 402 S-------VPYFRIFNPTIQGKRFDPQG--TFIRHWLPELNNVPTQ 438
                       R  N     ++FD  G   +++  + E+     +
Sbjct: 431 QGWKERPVFGKIRYMNYAGCKRKFDVDGYIAYVKRLVGEIKKRKPE 476


>gi|260765941|gb|ACX50001.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 143

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 6/143 (4%)

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL S+  GW
Sbjct: 1   YPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGW 60

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN-- 450
           Q+   T  DS  + RI NP  +G +FDP G ++R WLPEL+ +PT +IH P +  +    
Sbjct: 61  QYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQ 120

Query: 451 ----DLSLNYPLPIVDHKKACHH 469
               +L  NYP PIV   +A   
Sbjct: 121 AAGIELGSNYPRPIVGLDEAKAR 143


>gi|225848662|ref|YP_002728825.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644140|gb|ACN99190.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 452

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 91/430 (21%), Positives = 170/430 (39%), Gaps = 41/430 (9%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
           LR D   +   A+  A   +   +++ FI      +    + R   F+   +L+ +K++ 
Sbjct: 29  LREDFNFSLEFAIQKANKLNKPLLVSFFITD----KYKHSNQRYYKFMIEGILKTKKAIE 84

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133
           ++GI F   +    + +++             +  ++ Y   + +  + + K    +V  
Sbjct: 85  ERGIKFVIQKDDYVNGTLKLSKE------AVCIVLDKNYLKTQRKWRENIAKA--SQVAV 136

Query: 134 KSFDDSVLLPPGSILNHAL--------QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
              ++ V++P   + +  +        ++ KV   F K + +  ++ + + L V ++   
Sbjct: 137 YQLENDVVVPIQVVSDKPIPYAYLYRDRLNKVIDRFLKPVEKIDLKVNSKDLDVESLEFK 196

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
            P    +I    D     +D  F  G   A   L++F ++K+Y Y E R  P+   TS L
Sbjct: 197 TPDEFLSILNI-DKTVSTVDKYFVGGYDEAEKRLKEFIEKKLYKYKEFRSDPSKDYTSNL 255

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMG 304
           SPYL  G +SP +    + + +     K      S+ NELI WRE  R+   + P     
Sbjct: 256 SPYLHFGQISPLKIVLEVLKHY----DKNDENVVSFFNELIVWRELSRNFCWYNPLYNQY 311

Query: 305 KPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +    W  +   E  KD     + LQ +++  T  P  +AA ++L   G +HN +RM  A
Sbjct: 312 EGIPQWARQTLEEHKKDKRDYVYSLQEFEEAKTHDPYWNAAQKELLKTGKIHNYMRMYWA 371

Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP------YFRIF 409
                  +D    + I         LDG   +  GG  W   T +            R  
Sbjct: 372 KKIIEWTEDPKQAFDIACYLNDKYALDGRDPNGYGGISWCFGTFDRPWQERKVFGKIRYM 431

Query: 410 NPTIQGKRFD 419
           N     ++FD
Sbjct: 432 NDKGLERKFD 441


>gi|198458346|ref|XP_001361001.2| GA10839 [Drosophila pseudoobscura pseudoobscura]
 gi|198136308|gb|EAL25577.3| GA10839 [Drosophila pseudoobscura pseudoobscura]
          Length = 540

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 143/440 (32%), Gaps = 32/440 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 102 VYWMSRDGRVQDNWALLFAQRLALKLEMPLAVVFCLVPKFLNAT---IRHYKFMMGGLQE 158

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DKLLEK 125
           V++   + GI F          +++ L  +   + V  +     +    V R   + + K
Sbjct: 159 VEEQCRELGIPFHLLLGP----AVDRLPEFVRSKDVGAVVC--DFAPLRVPRKWVEDVAK 212

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AI 182
            L   V     D   ++P     +      +       + +   +      +  P     
Sbjct: 213 ALPKNVPLTQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSDFPPVIKHPYGEGC 272

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +   P+         +      +  +   G + A   L +FC  ++  + ++R+ P +  
Sbjct: 273 KKVKPIDWPAAYAMLECDMDVDEVKWAKPGYKAACLQLYEFCSRRLGKFNDKRNDPTVDA 332

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LSP+L  G +S ++C   ++           +     +      + + +    Y S+
Sbjct: 333 LSGLSPWLHFGQISAQRCVLEVQRYRSQHKASADAYCEEAIVRRELADNFCYYNENYDSL 392

Query: 302 CMGKP--FIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
               P  +       +  +D  + L+  +Q  T   + ++A  QL   G MH  LRM  A
Sbjct: 393 KGLSPWAYQSLEAHRKDKRDPCYTLEELEQSLTYDDLWNSAQLQLVREGKMHGFLRMYWA 452

Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408
                                    LDG   +   G  W+    +D            R 
Sbjct: 453 KKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGGIHDMGWKERAIFGKIRY 512

Query: 409 FNPTIQGKRFDPQGTFIRHW 428
            N     ++FD    F+  +
Sbjct: 513 MNYQGCKRKFDVNA-FVMRY 531


>gi|224060613|ref|XP_002190613.1| PREDICTED: similar to CPD photolyase-like [Taeniopygia guttata]
          Length = 697

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 146/437 (33%), Gaps = 41/437 (9%)

Query: 20  ITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           + DN A   A   +   +  +   F   P+         R   F+   L +V +  ++  
Sbjct: 272 VADNWAFLYAQRLALKQELPLHVCFCLVPKFLGAT---IRHYRFMLRGLQEVAEECAELN 328

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LEKRLQHRVICK 134
           I F          + + L ++ ++  V  L     +    + R  +  +++RL   V   
Sbjct: 329 IPFHLL----LGYAKDVLPTFVVEHGVGGLVT--DFSPLRLPRQWVEDVKERLPEDVPFA 382

Query: 135 SFDDSVLLPPG--------SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
             D   ++P          S      +++     F       +    L S P   I    
Sbjct: 383 QVDAHNIVPCWVASPKQEYSARTIRGKIHAQLPEFLTEFPPVVPHPHLPSCPAEPIAWEA 442

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
             +   +    D+  + ++     G    + +L+ F  E++  +   R+ P     S LS
Sbjct: 443 CYSSLQV----DHTVKEVE-WATPGTAAGMAVLKSFIAERLKSFSTHRNDPNKAALSNLS 497

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G +S ++    ++++  +      +     +      E + +    Y SV     
Sbjct: 498 PWLHFGQVSTQRAILEVQKQRRNYKDSVDAFVEEAVVRRELAENFCYYNENYDSVQGAYD 557

Query: 307 FIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF--- 360
           +   T K+        L + ++   G T  P+ +AA  Q+   G MH  LRM  A     
Sbjct: 558 WAQTTLKLHAKDKRPYLYSLQELEQGTTHDPLWNAAQLQMVQEGKMHGFLRMYWAKKILE 617

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS----VPYF---RIFNPTI 413
             +      +          LDG   +   G  W+    +D      P F   R  N   
Sbjct: 618 WTRSPEEALQFAIYLNDRYELDGRDPNGYVGCLWSICGIHDQGWAERPIFGKIRYMNYAG 677

Query: 414 QGKRFDPQGTFIRHWLP 430
             ++FD    F R + P
Sbjct: 678 CKRKFDVD-QFERRYTP 693


>gi|167629931|ref|YP_001680430.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum
           Ice1]
 gi|167592671|gb|ABZ84419.1| deoxyribodipyrimidine photolyase [Heliobacterium modesticaldum
           Ice1]
          Length = 498

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 85/472 (18%), Positives = 152/472 (32%), Gaps = 66/472 (13%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++   + V +         G +AR   F+   L  V++
Sbjct: 22  LYWMQASQRAEYNHALEYAIGEANKLGLPVLVFFGLTGGVPGANARHYRFLLEGLCDVRE 81

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L ++GI     +    +  +         +R   +  +R Y    +R  +   +    R
Sbjct: 82  ALQRRGIAMIIRRIPPVEGVVAL------ARRAALVVTDRGY----LRYQRQWREAAAAR 131

Query: 131 VICK--SFDDSVLLPPGSILNHALQMYKVYTP--------FRKALIQNLVQADLR----- 175
           + C     +  V++P  +           + P        F   L +             
Sbjct: 132 IDCPFIQVESDVIVPVETASPKEEYGAATFRPKIKRLLDTFLVPLEERDTDCPAPDVEAL 191

Query: 176 ---SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYV 231
              +LP   +        S+I               +  G + A   L  F  +K++ Y 
Sbjct: 192 LDEALPGEPVFADSATPLSSIVTALSVDASISPARGWRGGSKEAHRRLDDFLGKKLFRYH 251

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV--------------------DLL 271
           E +  P++ G S+LSP+L  G +SP +   + ++                        + 
Sbjct: 252 EDKKDPSLDGLSELSPFLHFGQISPLEVALKARQAVATDLSLDGTGLSLDGTGPSPVGVG 311

Query: 272 IKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK--DSHLLQAWK- 327
             P  G  ++L ELI  RE   +   + P+         W +    +   DS      K 
Sbjct: 312 PSPNPGLAAFLEELIVRRELAMNFAYYNPAYDQFAALPAWAQATLHSHRLDSREFNYTKA 371

Query: 328 ---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLL 381
                 T     +AA  +L   G MH  +RM           D    +RI  E   +  L
Sbjct: 372 ELENACTHDRYWNAAQTELVLRGKMHGYMRMYWGKKILEWTADPERAYRIAVELNDTYAL 431

Query: 382 DGDLASNNGGWQWAASTGNDSV------PYFRIFNPTIQGKRFDPQGTFIRH 427
           DG   +   G  W     +            R  N     ++FD +  ++R 
Sbjct: 432 DGRDPNGYTGIAWCFGKHDRPWGERAIFGKVRYMNAAGLRRKFDIEA-YVRK 482


>gi|71416884|ref|XP_810407.1| DNA photolyase [Trypanosoma cruzi strain CL Brener]
 gi|70874932|gb|EAN88556.1| DNA photolyase, putative [Trypanosoma cruzi]
          Length = 341

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 100/231 (43%), Gaps = 14/231 (6%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELIWREFYRHLMAFYP 299
            S++SPYLS G LSPR+ +  L+    + L     +      L  L  R+ Y H M    
Sbjct: 8   LSRVSPYLSNGSLSPRRFYEMLRRYATENLRDNFVQMQYREALLRLSRRD-YWHWMGLRY 66

Query: 300 SVCMGKPFIPWTEKIE----WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              +  P+ P  E+ +    W  D  ++Q W  G TG P  DAAMR+L T G++ +  R 
Sbjct: 67  GTLLFFPYGPRPEQTDNIPDWRHDEKIVQKWCAGLTGVPFADAAMRELLTTGFVAHEGRQ 126

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
             A  L +    DWR+G E+     LD D     G + + +    D      + +     
Sbjct: 127 ALAWLLTRGYGQDWRLGAEWLERCSLDYDPFLCYGNFAYFSELILDDFGEP-VRSVHWLA 185

Query: 416 KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPI 460
              D  G +++ WLP L+ +P  YIH PH    +        L   YP P+
Sbjct: 186 HHHDQTGIYVKKWLPLLSKIPPVYIHRPHVLTPRMQAMHGVRLGKTYPYPL 236


>gi|74136505|ref|NP_001028149.1| DNA photolyase [Monodelphis domestica]
 gi|682750|dbj|BAA06700.1| photolyase [Monodelphis domestica]
          Length = 470

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/436 (15%), Positives = 139/436 (31%), Gaps = 21/436 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN A   A   +  + + + +         G + R   F+   L +V +
Sbjct: 38  VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLGATIRHYDFMLRGLEEVAE 97

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              +  I F        D     L ++     +  +  +    ++  +  K ++  L  +
Sbjct: 98  ECEKLHIPFHLLLGLPKD----VLPAFVQAHSIGGIVTDFSPLLHHTQWVKDVQDGLPKQ 153

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTGPV 188
           V     D   ++P     +      +         + + +     +   P P+     PV
Sbjct: 154 VPFVQVDAHNIVPCWIASDKQEYGARTIRHKIHDRLPHFLTEFPPVICHPYPSNIQAEPV 213

Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             +             +  +   G  + L +L+ F  +++ Y+   R+ P     S LSP
Sbjct: 214 DWNACRAGLQVDRSVKEVSWAKPGTASGLTMLQSFISQRLPYFGSDRNNPNKDALSNLSP 273

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +   G +S ++    +++          +     +      + +      Y  +     +
Sbjct: 274 WFHFGQVSVQRAILEVQKHRSRYPDSVANFVEEAVVRRELADNFCFYNKNYDKLEGAYDW 333

Query: 308 IPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---L 361
              T ++        L + +Q   G T  P+ +AA  Q+   G MH  LRM  A      
Sbjct: 334 AQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAAQMQMVQEGKMHGFLRMYWAKKILEW 393

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQ 414
            +                 LDG   +   G  W+    +D            R  N    
Sbjct: 394 TRSPEEALEFAIYLNDRFQLDGRDPNGYVGCMWSICGIHDQGWAEREIFGKIRYMNYAGC 453

Query: 415 GKRFDPQGTFIRHWLP 430
            ++FD    F R + P
Sbjct: 454 KRKFDV-AEFERKYSP 468


>gi|327284572|ref|XP_003227011.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Anolis
           carolinensis]
          Length = 535

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 150/445 (33%), Gaps = 39/445 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV---FIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R+ DN A   A   +  + + +   F   P+         RQ  F+   L +
Sbjct: 100 LYWMSRDQRVQDNWAFLYAQRLALKQNLPLHVAFCLVPKFLEAT---IRQFGFMLKGLKE 156

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV--RRDKLLEK 125
           V +   +  I F          + + L  +  +  +  +     +    V  +  + +++
Sbjct: 157 VAEECQELSIPFHLL----IGFAKDTLPPFVAKHNIAGVVT--DFAPLRVPMQWVQEVQE 210

Query: 126 RLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIR 183
           RL   V     D   ++P   +          +       L + L         P  A  
Sbjct: 211 RLPPDVPFVQVDAHNVVPCWVASEKQEYGARTIRRKIHDRLCEFLTGFPPVIQHPHQAAS 270

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              P+         +      +  +   G    L +L +F +E++ ++   R+ P     
Sbjct: 271 QAEPIDWDACSASLEVDRSVPEVEWAKPGSAAGLLVLGEFVQERLKFFSSDRNNPNRAAL 330

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSV 301
           S LSP+   G +S ++    +++       + +    +++ E LI RE   +   + P+ 
Sbjct: 331 SNLSPWFHFGQVSVQRAILEVRKH----RTRCRESVEAFIEEALIRRELADNFCFYNPNY 386

Query: 302 CMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              +    W +        +     + L+  ++G T   + +AA  Q+   G MH  LRM
Sbjct: 387 DKVEGAYEWAKTTLKLHATDKRPHLYTLKQLEEGKTHDQLWNAAQLQMVHEGKMHGFLRM 446

Query: 356 ITASFLVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPY 405
             A  +++                    LDG   +   G  W+    +D           
Sbjct: 447 YWAKKILEWTNSPEEALKFSIYLNDRYELDGRDPNGYVGCMWSVCGIHDQGWAERAVFGK 506

Query: 406 FRIFNPTIQGKRFDPQGTFIRHWLP 430
            R  N     K+FD  G F R + P
Sbjct: 507 IRYMNYAGCTKKFDV-GQFERKYNP 530


>gi|195154062|ref|XP_002017941.1| GL17032 [Drosophila persimilis]
 gi|194113737|gb|EDW35780.1| GL17032 [Drosophila persimilis]
          Length = 540

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 142/440 (32%), Gaps = 32/440 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 102 VYWMSRDGRVQDNWALLFAQRLALKLEMPLAVVFCLVPKFLNAT---IRHYKFMMGGLQE 158

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DKLLEK 125
           V++     GI F          +++ L  +   + V  +     +    V R   + + K
Sbjct: 159 VEEQCRDLGIPFHLLLGP----AVDRLPEFVRSKDVGAVVC--DFAPLRVPRKWVEDVAK 212

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AI 182
            L   V     D   ++P     +      +       + +   +      +  P     
Sbjct: 213 ALPKNVPLTQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSDFPPVIKHPYGEGC 272

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           +   P+         +      +  +   G + A   L +FC  ++  + ++R+ P +  
Sbjct: 273 KKVKPIDWPAAYAMLECDMDVDEVKWAKPGYKAACLQLYEFCSRRLGKFNDKRNDPTVDA 332

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LSP+L  G +S ++C   ++           +     +      + + +    Y S+
Sbjct: 333 LSGLSPWLHFGQISAQRCVLEVQRYRSQHKASADAYCEEAIVRRELADNFCYYNENYDSL 392

Query: 302 CMGKP--FIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
               P  +       +  +D  + L+  +Q  T   + ++A  QL   G MH  LRM  A
Sbjct: 393 KGLSPWAYQSLEAHRKDKRDPCYTLEELEQSLTYDDLWNSAQLQLVREGKMHGFLRMYWA 452

Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408
                                    LDG   +   G  W+    +D            R 
Sbjct: 453 KKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGGIHDMGWKERAIFGKIRY 512

Query: 409 FNPTIQGKRFDPQGTFIRHW 428
            N     ++FD    F+  +
Sbjct: 513 MNYQGCKRKFDVNA-FVMRY 531


>gi|255070203|ref|XP_002507183.1| predicted protein [Micromonas sp. RCC299]
 gi|226522458|gb|ACO68441.1| predicted protein [Micromonas sp. RCC299]
          Length = 579

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/456 (18%), Positives = 145/456 (31%), Gaps = 34/456 (7%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +        + W   D R+ DN AL  AC  ++     V +      R  G  ARQ  F+
Sbjct: 15  EGKVGTGPVIYWCSRDQRVRDNWALIYACETANETGAPVVVVFSLVTRFLGAGARQFCFM 74

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L +++++L  K I F   +          +  +  +   + +          + R  
Sbjct: 75  LKGLREMEQALLAKNIKFVLLEGDPSLT----VPRFAKECGASLIVA--DQSPLRLGRTW 128

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGS--------ILNHALQMYKVYTPFRKALIQNLVQAD 173
            +             D   ++P                 ++ K+Y  F     +  V  +
Sbjct: 129 RVAIASSVDCPLHEVDAHNVVPVWEASQKLEVGARTLRGKLAKLYPEFLVEFPETPVVKE 188

Query: 174 -LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYV 231
                   A+   G    + I R  +      +  +   GE  A   L  F   ++ YY 
Sbjct: 189 TWPCAAAAALPTIGIDWEALIVRARNDGAAVPEVTWAVPGEFAAHATLEHFLTRRLKYY- 247

Query: 232 EQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           E R+ PA     S LSPYL  G +S ++C    +                 +      + 
Sbjct: 248 EHRNDPAKPQALSGLSPYLHFGQISAQRCALEARRYAKSSNKAVDVFLEELIVRRELADN 307

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL----LQAWKQGYTGFPIIDAAMRQLNTI 346
           +      Y ++   K         E +KD       LQ ++ G T   + +AA  ++   
Sbjct: 308 FCWYSPKYDTIEGQKYEWAKETVREHSKDKRAYLYSLQQFENGETHDDLWNAAQLEMVHG 367

Query: 347 GWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS- 402
           G MH  +RM  A       +                 LDG   S   G  W+    +D  
Sbjct: 368 GKMHGFMRMYWAKKIMEWTESPDQALEFAIHLNDKYQLDGRDPSGYVGCMWSIVGVHDQG 427

Query: 403 ---VPYF---RIFNPTIQGKRFDPQGTFIRHWLPEL 432
               P F   R    +   K+F  Q  +I+  + EL
Sbjct: 428 WSERPIFGKIRYMAYSGCVKKFKVQ-DYIKR-VDEL 461


>gi|299135755|ref|ZP_07028939.1| DNA photolyase FAD-binding [Acidobacterium sp. MP5ACTX8]
 gi|298601879|gb|EFI58033.1| DNA photolyase FAD-binding [Acidobacterium sp. MP5ACTX8]
          Length = 487

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 138/441 (31%), Gaps = 30/441 (6%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A       + W++   R  DN AL  A   ++   +               + R   F+ 
Sbjct: 44  APAKGKCVVYWMQRAQRGRDNHALDKAIEVANVLGLPCVAYFAGIKNFPHANLRHYAFLN 103

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L  +++  + +G+ F   +    D      + +        +  +        R    
Sbjct: 104 QGLPDIEEDCAARGVGFVMRRAPEEDH-----ERFFADVDAAMVIGDENPMREPERWRAK 158

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           L K L  RV   + D  V++ P  +L  A     V  P     +   +        +   
Sbjct: 159 LAKSL--RVPFWTVDADVIV-PSKLLEKAQFSAGVARPRLYRALPEFLHDYENPAALKVW 215

Query: 183 RLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           R    +   +I       ++  D        +  G   A+  L  FC + +  Y   R+ 
Sbjct: 216 RKPRGLHTDDIREDMTRGWKDFDRSVLPVAAWQGGHHAAMKRLHLFCGQMLETYDRDRNH 275

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P + G+S+LSPYL  G L P      L  +         +    +   ++WRE   + + 
Sbjct: 276 PELDGSSKLSPYLHFGHLGPLTIALALNAQVKRQPKLAAARDSYFNELIVWRELAVNFVR 335

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           + P          W        D         L   +   T   + +AA  Q+   GWMH
Sbjct: 336 YQPEYDSPGCADNWARATIAEHDRDEREVLYTLAQLEGARTHDELWNAAQLQMVRYGWMH 395

Query: 351 NRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV---- 403
           N LRM  A       ++     +          LDG   +   G  WA     D      
Sbjct: 396 NYLRMYWAKKIVEWTRNTATAMKWAIYLNDRYFLDGRDPNGYAGVAWAVLGKFDRAWGER 455

Query: 404 ---PYFRIFNPTIQGKRFDPQ 421
                 R  +    G++FD +
Sbjct: 456 PVFGKRRYMSGASTGRKFDAE 476


>gi|254480196|ref|ZP_05093444.1| FAD binding domain of DNA photolyase, putative [marine gamma
           proteobacterium HTCC2148]
 gi|214039758|gb|EEB80417.1| FAD binding domain of DNA photolyase, putative [marine gamma
           proteobacterium HTCC2148]
          Length = 227

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 101/221 (45%), Gaps = 5/221 (2%)

Query: 230 YVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y E R+ +  +  +S LSP+L+ G L+  +    L +   + L         + +EL+WR
Sbjct: 10  YKETRNQLDGLFYSSFLSPWLANGSLAVSKLAWELDQ--FEKLHGANDSTRHFYSELLWR 67

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF+        S            K+    D      W  G T +P+++A M QL   GW
Sbjct: 68  EFFYRREVEDSSSLFRAKGTARERKL-VTFDPRGFARWCAGATDYPLVNALMHQLVESGW 126

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           M NR R I AS LV ++ VDWR G  +F   LLD D ASN G WQ+ A  G D     R 
Sbjct: 127 MSNRGRQIAASCLVNEMNVDWRFGAAFFEQHLLDYDAASNYGNWQYIAGVGADPRG-GRH 185

Query: 409 FNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK 449
           F+   Q ++FDP+G F + W       P   + A    L+ 
Sbjct: 186 FDLVKQTRQFDPEGEFTQRWEGYCPKQPEHIVDAADWPLES 226


>gi|193652710|ref|XP_001949151.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Acyrthosiphon
           pisum]
          Length = 506

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 140/435 (32%), Gaps = 23/435 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W   D RI DN AL  A   +    +++ I      +    S R    I+  L +++ 
Sbjct: 68  IYWTFRDERIHDNWALLYAQKLAIKNKVSLHITFCRLKQFLDCSLRHYKHIFQGLEELET 127

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
                 I F +        + + L  +  + ++  +  +       +   K L  R+   
Sbjct: 128 ECKSLDIQFHFL----IGCAADILPDFVKKHKLGAIIVDFMPVREHISWTKQLADRIGSE 183

Query: 131 VICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGPV 188
           V     D   ++P     +        +       L + L +       P  +     P 
Sbjct: 184 VPVIQVDAHNIVPCWVASDKQEYSARTIRNKINNKLPEFLTEFPPVIKHPFRSTFKAKPT 243

Query: 189 TPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                 +  +     +  P    G +  +  L +F K+++  Y   R+ P   G S+LSP
Sbjct: 244 NWDEADKTLEVDRSVVSVPGLKAGFKAGMSELEQFLKKRLPKYSTDRNNPVKDGLSKLSP 303

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +S ++C   + +          +     +      + +      Y     G P 
Sbjct: 304 WLHFGQISAQRCILEVSKLSKQYPDSVAAYREEAIVRRELSDNFCFYNPKY-DKIEGAPN 362

Query: 308 IPWTEKIEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK 363
              T   E  KD  +    ++      T   + ++A  QL   G MH  LRM  A  +++
Sbjct: 363 WAQTSLNEHRKDKRMFVYTREELESSRTHDDLWNSAQIQLVKEGKMHGFLRMYWAKKILE 422

Query: 364 DLLVDWRIGEE---YFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTI 413
                 R   +         +DG   S   G  W+    +D            R  N   
Sbjct: 423 WTDTPDRALADAIYLNDKYSMDGRDPSGFVGCMWSICGIHDQGWKEREIFGKIRYMNYAG 482

Query: 414 QGKRFDPQGTFIRHW 428
             ++FD    FI  +
Sbjct: 483 CKRKFDINA-FIARY 496


>gi|254461876|ref|ZP_05075292.1| deoxyribodipyrimidine photo-lyase, putative [Rhodobacterales
           bacterium HTCC2083]
 gi|206678465|gb|EDZ42952.1| deoxyribodipyrimidine photo-lyase, putative [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 408

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/270 (24%), Positives = 101/270 (37%), Gaps = 17/270 (6%)

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSI 251
           F D P    D +F       L  L  F      +Y  QR+           S LSP++  
Sbjct: 12  FDDLPRLNKDVVFTPTRAAGLAQLETFVSRMGDHYTAQRNYDLGAQDRSTASALSPWIRH 71

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
            +++  +   R             S A  ++ E+ WR +++  +  +PSV          
Sbjct: 72  RLITEEEVLTRALARH------SPSAASKFVQEVFWRGYFKGWLEQHPSVWKAFRHDLRL 125

Query: 312 EKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                  D    H      +G +G    D  + +L   G++HN  RM  AS  +  L + 
Sbjct: 126 AYARLENDEVLKHDYTDATEGRSGIACFDHWVNELVQTGYLHNHARMWFASIWIFSLRLP 185

Query: 369 WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQ-GKRFDPQGTFI- 425
           W++G ++FM  LLDGD ASN   W+W          Y  R  N     G RF+P+G    
Sbjct: 186 WQLGADFFMQHLLDGDPASNTLSWRWVGGLHTKGKTYLARASNIAKYTGGRFNPEGQLAG 245

Query: 426 -RHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
               L EL   P   +  P +      L L
Sbjct: 246 LAIALEELEEHPFVPLPLPSTAPQSKTLRL 275


>gi|313228122|emb|CBY23272.1| unnamed protein product [Oikopleura dioica]
          Length = 168

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 93/167 (55%), Gaps = 8/167 (4%)

Query: 314 IEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
           I W+K+   L  A++   TGFP +DA + +L T G + +  R+  A+FL K L VDWR G
Sbjct: 4   IWWSKNQKELFAAFEDARTGFPFVDAMVTELKTRGDVRHWARLCLANFLTKVLHVDWRHG 63

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           E++F   L+D D   NNG WQ+   TG        I+NP  Q K+FD  G +I+ WLP L
Sbjct: 64  EKFFARHLVDYDPIVNNGNWQYCGGTGTGIAHRPDIYNPWNQSKKFDKNGEYIQKWLPFL 123

Query: 433 NNVPTQYIHAPHSWLDKNDL----SLNYPLPIVDHKKACHHTLNQYY 475
             V   ++HA   W DK+ L     L+Y  P+V++ KA  ++L  + 
Sbjct: 124 AKVGPAHLHA---WEDKHKLYNLSKLDYVKPVVEYAKAREYSLKMFK 167


>gi|75907163|ref|YP_321459.1| deoxyribodipyrimidine photo-lyase family protein [Anabaena
           variabilis ATCC 29413]
 gi|75700888|gb|ABA20564.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Anabaena variabilis ATCC 29413]
          Length = 278

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 9/208 (4%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
             G Q A   L+   K     Y + R+       ++LSPY+  GVLS R+  + + +   
Sbjct: 33  KGGRQAAQKALQ---KVNPATYAKTRNFLTGD-VTRLSPYIRYGVLSLREIRDYVLDN-- 86

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
              +K    A   +NEL WR++++ L     +          T        S L    K+
Sbjct: 87  ---VKHSDDATKLINELGWRDYWQRLYVKLGNGIWEDQEEYKTGYTPAEYASDLATDIKE 143

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG   ID+  R+L   G++HN +RM  A+++V    + W+ G ++F+  LLDGD ASN
Sbjct: 144 GKTGLVCIDSFSRELRETGYLHNHMRMWLAAYIVHWRRIRWQEGAKWFLEHLLDGDPASN 203

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           N  WQW AST +    +F   N     K
Sbjct: 204 NMSWQWVASTFSQKPYFFNRENLERYTK 231


>gi|80971696|gb|ABB52818.1| cryptochrome 2 [Sesamia nonagrioides]
          Length = 264

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/199 (30%), Positives = 89/199 (44%), Gaps = 12/199 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVY-----YYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWN 261
           +  GE  AL  +++    K        Y+     P + G    LSP L  G LS R    
Sbjct: 67  WVGGETTALKQMQQRLAVKYETFLRGSYLPTHGNPDLLGRPISLSPALRFGCLSVRSFCW 126

Query: 262 RLKEEFVDL---LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
            +++ F ++    +  +S +     +LIWRE++  +    P+        P    I W  
Sbjct: 127 SVQDLFREVHQGRLATQSASHFITGQLIWREYFYTMSVNNPNYG-QMSGNPICLDIPWKN 185

Query: 319 DS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYF 376
                LQ W +G TGFP +DAAMRQL T GW+H+  R   A FL +  L + W  G  +F
Sbjct: 186 PEGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHVARNTVAFFLTRGTLWLSWEHGLNHF 245

Query: 377 MSQLLDGDLASNNGGWQWA 395
           +  LLD D +   G W W 
Sbjct: 246 LKYLLDADWSVCAGNWMWV 264


>gi|145219390|ref|YP_001130099.1| deoxyribodipyrimidine photo-lyase type II [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205554|gb|ABP36597.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium
           phaeovibrioides DSM 265]
          Length = 452

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 155/449 (34%), Gaps = 35/449 (7%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58
           +A       + W+  D R+  N+AL  +          +  VF              RQ 
Sbjct: 12  EAEEKRGPVIYWMSRDQRVQHNRALLFSQMKAKALGQPLRVVFTLASSFIGATY---RQY 68

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-EWLDSYCLQQRVTKLFYNRQYEINEV 117
           HF+   L +++  L +  I F   QCS       + L+ Y        +     Y    +
Sbjct: 69  HFMLEGLREIELLLGELNIGFVLLQCSPQSGGPGKELEGYAGSSGAGCVVT--DYSPLRI 126

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLR 175
            R    +     +V     D   ++P  +         + + P    L+   +Q    + 
Sbjct: 127 SRQWKQQAAASLKVPLYEVDAHNIVPCHAASGKQEYAARTFRPKINRLLGEFLQPLQAVE 186

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           ++P  A                D   + ID     GE+ A   LR+F  EK+  Y E R+
Sbjct: 187 AMPHRAELQKVNWREVFANLSVDRTVEPID-WLKPGERAASEHLRRFISEKLPRYSELRN 245

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHL 294
            P  +GTS LS YL  G LS  Q    ++         P+    ++L ELI  RE   + 
Sbjct: 246 DPTAEGTSLLSAYLHFGQLSAAQVALEVQ-----SSGAPEESKAAFLEELIVRRELSDNY 300

Query: 295 MAFYPSVCMGKPFIPWTEK------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
            A        +    W  +      ++  +  +  Q ++   T   + +AA ++L   G 
Sbjct: 301 CAHQEQYDAYEGLPGWARQSLEQHSLDPRETLYSPQEFETAATHDRLWNAAQKELLHTGR 360

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDS--- 402
           +H  +RM  A  +++         E          LDG   +   G  W+    +D    
Sbjct: 361 IHGYMRMYWAKKILEWSPSPREAFETALWLNDRYALDGRDPNGYSGVAWSIGGLHDRPWF 420

Query: 403 ----VPYFRIFNPTIQGKRFDPQGTFIRH 427
                   R  N +   ++F+ +G +I  
Sbjct: 421 ERPVYGKIRYMNASGCRRKFNVEG-YIAK 448


>gi|218780190|ref|YP_002431508.1| deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761574|gb|ACL04040.1| Deoxyribodipyrimidine photo-lyase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 456

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 144/421 (34%), Gaps = 29/421 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++   + V +           + R   F+   L + Q+
Sbjct: 24  LYWMQQSQRAKHNLALEFAISRANDLDVPVVVVFGLTVNYPEANYRHYLFMLEGLAETQR 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L ++GI     + S        L +  L ++   +  ++ Y  ++      + ++   +
Sbjct: 84  QLRERGIPLVVLENSPP------LAALDLGKKAALIVTDKGYMRHQREWRAQVAEQASCQ 137

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTP--------FRKALIQNLVQADLRSLPVPAI 182
           V+    +  V++P       A    +   P        F     +  ++  +R   +  +
Sbjct: 138 VV--QVETDVIVPVNIASQKAEWAARTIRPKINRELDNFLLLPEKCALKNKVRDFDIQGL 195

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            L+ P +        + P   +   F  G   A   + KF ++ +  Y    + P +   
Sbjct: 196 DLSDPASLLKNLGMPETP-PGVSAFFKGGASAAQKRMDKFIQKSLDNYSRHHNRPDLADV 254

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S + PYL  G +S      R+K         P++ A      ++ RE   + + F P+  
Sbjct: 255 SGMGPYLHFGQVSAAALALRVKNL---KDADPEAQAAYLEQIIVRRELAMNFVHFTPNYD 311

Query: 303 MGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                  W +K       +     +     +   T  P  +AAMR++   G+MHN +RM 
Sbjct: 312 QYACLPTWAQKTLKERAQDPRDPLYTPDQLEACDTHDPYWNAAMREMVVTGYMHNHMRMY 371

Query: 357 TASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
               +++        W +         LDG   ++  G  W     +       IF    
Sbjct: 372 WGKKILEWSPSPQKAWDVLLYLNNKYFLDGRDPNSYAGVGWIFGLHDRGWNRRPIFGTVR 431

Query: 414 Q 414
            
Sbjct: 432 Y 432


>gi|163731524|ref|ZP_02138971.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter litoralis
           Och 149]
 gi|161394978|gb|EDQ19300.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter litoralis
           Och 149]
          Length = 404

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/279 (24%), Positives = 109/279 (39%), Gaps = 26/279 (9%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQC 259
           +  MF      AL  L  F  +    Y  +R+     G     S LSPYL   +++  + 
Sbjct: 5   MSQMFLPTHTAALERLSAFVPQAGRDYATRRNYDFGPGNHTHVSGLSPYLRCRLITESEV 64

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF---IPWTEKIEW 316
            N + +          + A  ++ E+ WR +++  +   P+V           W +    
Sbjct: 65  VNAVLQRH------SIAAAEKFMQEVFWRTYWKGWLELRPAVWTQYQVALDQAWNDVQTQ 118

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
                  +   +G TG    DA   +L   G++HN  RM  AS  +  L + W +G ++F
Sbjct: 119 AGLRARWENACRGETGIDCFDAWAHELVETGYLHNHARMWFASIWIFTLELPWELGADFF 178

Query: 377 MSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQGTFIRHWLPELNN 434
           +  LLDGD ASN  GW+W A        Y  R  N +   + RF P+       +P    
Sbjct: 179 LRHLLDGDPASNTLGWRWVAGIQTQGKTYLARSSNISKFTENRFHPKWQLAGEAIPRSAP 238

Query: 435 VPTQYIHAPHS-----------WLDKNDLSLNYPLPIVD 462
           +P +    P              L + DLS  + L +VD
Sbjct: 239 LPPEPRSLPPGTAYDPARRTGFLLHEEDLSPGFFLNMVD 277


>gi|30421116|gb|AAP31406.1| CPD photolyase [Spinacia oleracea]
 gi|30421159|gb|AAP31407.1| CPD photolyase [Spinacia oleracea]
          Length = 491

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 149/452 (32%), Gaps = 31/452 (6%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
             +      + W+  D R+ DN AL  A   ++ +   V +A        G +ARQ  F+
Sbjct: 21  PGSNPNGAVVYWMFRDQRVRDNWALIHAVDEANKRNAPVAVAFNLFDGFKGANARQLGFM 80

Query: 62  YASLLQVQKSL-SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              L  +Q SL +   I F   Q    +   ++L        VT     R+    +    
Sbjct: 81  LRGLKLLQASLHNSLHIPFFLFQGEVVETIPKFLVECGASLLVTDFTPLREIRGFK---- 136

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ-NLVQADLRSLPV 179
           + L KR+   V     D   ++P     +      +        L+   L    +   P 
Sbjct: 137 EELCKRVGDSVSIHEVDAHNVVPVWEASSKLEYGARTIRTKINKLLPTYLTDYPILQPPN 196

Query: 180 PAIRLTGPVTPSNIPRFFDY--PFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVE 232
            +   + PV   +           +  +  +   GE  AL +L      F  +++  Y  
Sbjct: 197 CSWESSSPVIQWDQLIEDRLKKGAEVPEIDWCKPGETAALEVLKGSQNGFLTKRLKSYAT 256

Query: 233 QRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
            R+IP   G  S LSPYL  G +S ++C    +           +     +      + +
Sbjct: 257 DRNIPLKPGALSGLSPYLHFGQISAQRCAFEARNVRKVAPEAVDAFTEELIVRRELADNF 316

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIG 347
            +    Y S+ MG         ++   D       ++      T  P+ +A+  ++   G
Sbjct: 317 CYYQPNYDSL-MGAWEWARKTLMDHASDKREHLYTREQLEKAQTADPLWNASQLEMVHFG 375

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDS-- 402
            MH  +RM  A  +++                    +DG   +   G  W+    +D   
Sbjct: 376 KMHGFMRMYWAKKILEWTSGPEEALAIAIYLNDKYEMDGRDPNGYVGCMWSICGLHDQGW 435

Query: 403 -----VPYFRIFNPTIQGKRFDPQG--TFIRH 427
                    R  N     ++F+  G   ++R 
Sbjct: 436 RERPVFGKIRYMNYAGCKRKFNVDGYIAYVRK 467


>gi|294495094|ref|YP_003541587.1| deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii
           DSM 5219]
 gi|292666093|gb|ADE35942.1| Deoxyribodipyrimidine photo-lyase type II [Methanohalophilus mahii
           DSM 5219]
          Length = 457

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 158/449 (35%), Gaps = 49/449 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIY 62
           + +  L W+++  R+  N AL  A   +   D  ++ +F  T    +    + R   F+ 
Sbjct: 17  SGTYVLYWMQSSQRVDYNHALEFAIQQANKMDLPLLVLFCLT----KYPQANLRHYTFML 72

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L+Q +KSL + GI F   + +  D   E        +  + L  ++ Y     +  + 
Sbjct: 73  EGLVQTKKSLEKLGIQFVMLKGNPVDVVHE------FARDASLLVTDQDY----QKLQRG 122

Query: 123 LEKRLQHRVICK--SFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPV 179
             + L   + C     + +V++P  ++ +        +     K L + +   +L +L  
Sbjct: 123 WRENLAASISCPFAQVESNVIVPVENVSDKEEWSAATLRRKIHKHLDEFVHPFELSALAN 182

Query: 180 PAIRLTGPVTPSNIP----RFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
            ++ +       N         D        P +  G   A   L  F   ++  Y E+R
Sbjct: 183 SSLEIDQDSLDLNDFEQILNSMDIDRSVKPSPRYKGGIHQAREKLSDFIAHRLGDYDEKR 242

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           + P +   S +SPYL  G +SP +   ++++         K G+ +++ EL+ R      
Sbjct: 243 NDPNLDFLSGMSPYLHFGQISPLEIALKVQDA-------KKGGSTAYMEELVVRRELAMN 295

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW-------KQGYTGFPIIDAAMRQLNTIG 347
             +Y         +P   K    +     + +       +Q  T  P  +AA R++   G
Sbjct: 296 FVYYDKDYDSLDCLPDWAKKTLAEHRDDFRQYIYTQEEFEQARTHDPYWNAAQREMVLTG 355

Query: 348 WMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG----- 399
            MH  +RM                ++I         LDG   +   G  W          
Sbjct: 356 KMHGYMRMYWGKKILEWTDSPEQAYQIALYLNNKYELDGRDPNGYAGIAWCFGKHDRAWK 415

Query: 400 -NDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
             D     R  N     ++FD  G ++  
Sbjct: 416 ERDIFGKVRYMNANGLKRKFDAGG-YVEK 443


>gi|225470301|ref|XP_002266483.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 485

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 88/449 (19%), Positives = 156/449 (34%), Gaps = 38/449 (8%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
               + W+  D R+ DN AL  A   ++   + V IA     +  G  ARQ  F+   L 
Sbjct: 21  AGPVVYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLFDQFLGAKARQLGFMLRGLR 80

Query: 67  QVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            + + L Q   I F   Q     ++IE + ++  +   + L  +        +  + + K
Sbjct: 81  LLHRDLEQTLQIPFFLFQG----EAIETIPNFLREYGASLLVTDFSPLREVQKWKEEICK 136

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           R+  +V     D   ++P   + +  L+        +   +      D  +L  P+I+  
Sbjct: 137 RVGKKVSIHEVDAHNIVPTW-VASEKLEYSARTIRGKINKLLPEYLIDFPTLQPPSIKWA 195

Query: 186 GPVTPSNIPRF----FDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQRDI 236
           G     +             +  +  +   GE  A+ IL      F  +++  Y   R+ 
Sbjct: 196 GTNQSIDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGFLTKRLKNYSTDRNN 255

Query: 237 PAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHL 294
           P   G  S LSPYL  G +S ++C    K+   +           +L ELI  RE   + 
Sbjct: 256 PLKPGALSGLSPYLHFGQISAQRCALEAKKNRKNCP----QAVDVFLEELIVRRELADNF 311

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIGW 348
             + P     +    W  K   +  S   +        +   T  P+ +A+  ++   G 
Sbjct: 312 CFYQPRYNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWNASQLEMVHYGK 371

Query: 349 MHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS--- 402
           MH  +RM  A       +       I         +DG   +   G  W+    +D    
Sbjct: 372 MHGFMRMYWAKKILEWTRGPEEALAISIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWQ 431

Query: 403 ----VPYFRIFNPTIQGKRFDPQGTFIRH 427
                   R  N     ++FD  G +I H
Sbjct: 432 ERQIFGKIRYMNYAGCKRKFDVDG-YIAH 459


>gi|238757987|ref|ZP_04619168.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236]
 gi|238703741|gb|EEP96277.1| Deoxyribodipyrimidine photo-lyase [Yersinia aldovae ATCC 35236]
          Length = 120

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 71/115 (61%), Positives = 83/115 (72%)

Query: 366 LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
           ++DWR GE YFM+QL+DG LA+NNGGWQWAASTG D+ PYFRIFNPT QG+RFD  G FI
Sbjct: 1   MIDWREGERYFMAQLIDGSLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDKDGAFI 60

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           R WLPEL  VP   IH P  W D+    L+YPLP+VDHK A   TL  +  AK+ 
Sbjct: 61  RRWLPELAAVPDSDIHQPWRWADRQQRHLDYPLPLVDHKLARLATLAAFETAKRD 115


>gi|255025620|ref|ZP_05297606.1| hypothetical protein LmonocytFSL_03450 [Listeria monocytogenes FSL
           J2-003]
          Length = 127

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 59/122 (48%), Positives = 79/122 (64%), Gaps = 6/122 (4%)

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           +L+DWR GE+YF   L+D D ASN GGWQWAASTG D+VPYFRIFNP  Q ++FDP G F
Sbjct: 1   MLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPITQSQKFDPTGKF 60

Query: 425 IRHWLPELNNVPTQYIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAK 478
           IR ++ EL N+P ++IH P    +         L  +YP PI+DHK+     + +Y  +K
Sbjct: 61  IREYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIIDHKERRKLAIARYEFSK 120

Query: 479 KQ 480
           + 
Sbjct: 121 EH 122


>gi|299473188|emb|CBN78764.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 506

 Score =  143 bits (360), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 150/448 (33%), Gaps = 39/448 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  + W+  D R  DN A+  A          ++  F+    Q  +   + R + F+   
Sbjct: 29  NCVVYWMSRDQRAEDNWAMLYAKNLAQEGGVPLVVAFVLGAWQVTEPKTTLRYAGFMLKG 88

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L + +  L +K I F   Q +   +  + + ++  +     +  +     +  RR + + 
Sbjct: 89  LEETEGDLRKKKIPFHLLQAA---EPRDVVPAFAKELGALAIVTDMCPLRDPTRRAREVA 145

Query: 125 KRLQ---HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           + L            D   ++P  +  +    M +   P   A    L      S     
Sbjct: 146 EELNKSGDGTPLFQVDAHNVVPVWATSDKQETMARTIRPKIHARPDFLGAIPELSPNPQG 205

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            +L             D      +  +   G + A   L+ F + ++  + +  + P   
Sbjct: 206 TKLPAATDWKAAQTSLDLDRSVPEISWLKPGAKGASDNLQSFIETRMKGFADLSNNPNED 265

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYP 299
             S +SPY ++G +S +    R+K        +   G  +++ + ++ RE   +   +  
Sbjct: 266 VCSHMSPYFNLGQMSAQAAVMRVK-----ASRRHPDGVKAFVEQGVVRRELSDNFCFYND 320

Query: 300 SVCMGKPFIPW---------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +         W          ++ EW      L   ++  T   + +AA  QL   G MH
Sbjct: 321 NYDNLSGAAGWARESLEAHANDQREWTYSVQEL---EEAKTHEDLWNAAQLQLVRDGKMH 377

Query: 351 NRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS----- 402
           N LRM  A  +++              +     LDG   +   G  W+    +D      
Sbjct: 378 NFLRMYWAKKILEWSPSPHDALERCLFFNDKYELDGRDPNGFTGCAWSVMGIHDMGWKER 437

Query: 403 --VPYFRIFNPTIQGKRFDPQGTFIRHW 428
                 R  N     ++FD Q  F+  +
Sbjct: 438 EVFGKIRYMNYAGCKRKFDVQ-EFVSKY 464


>gi|195332255|ref|XP_002032814.1| GM20985 [Drosophila sechellia]
 gi|194124784|gb|EDW46827.1| GM20985 [Drosophila sechellia]
          Length = 555

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 70/446 (15%), Positives = 143/446 (32%), Gaps = 32/446 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61
           +++   + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+
Sbjct: 112 SSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFM 168

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L +V++      I F          ++E L  +   + +  +     +    + R  
Sbjct: 169 MGGLQEVEQQCRALDIPFHLL----MGPAVEKLPQFVKSKDIGAVVC--DFAPLRLPRQW 222

Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176
           +  + K L   V     D   ++P     +      + +       L + L +     + 
Sbjct: 223 VEDVGKALPQTVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVQH 282

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235
                 +    V  S          +  +  +   G + A   L +FC  ++ ++ ++R+
Sbjct: 283 PHGTGCKNVKAVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 342

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P     S LSP+L  G +S ++C   ++           +     +      + +    
Sbjct: 343 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYN 402

Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             Y S+       +       +  +D  + L+  ++  T   + ++A  QL   G MH  
Sbjct: 403 EHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGF 462

Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------- 402
           LRM  A                         LDG   +   G  W+    +D        
Sbjct: 463 LRMYWAKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAV 522

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428
               R  N     ++FD    F+  +
Sbjct: 523 FGKVRYMNYQGCRRKFDVNA-FVMRY 547


>gi|195581344|ref|XP_002080494.1| GD10512 [Drosophila simulans]
 gi|194192503|gb|EDX06079.1| GD10512 [Drosophila simulans]
          Length = 555

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/446 (15%), Positives = 143/446 (32%), Gaps = 32/446 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61
           +++   + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+
Sbjct: 112 SSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFM 168

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L +V++      I F          ++E L  +   + +  +     +    + R  
Sbjct: 169 MGGLQEVEQQCRALDIPFHLL----MGPAVEKLPQFVKSKDIGAVVC--DFAPLRLPRQW 222

Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176
           +  + K L   V     D   ++P     +      + +       L + L +     + 
Sbjct: 223 VEDVGKALPQTVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVQH 282

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235
                 +    V  S          +  +  +   G + A   L +FC  ++ ++ ++R+
Sbjct: 283 PHGTGCKNVKAVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 342

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P     S LSP+L  G +S ++C   ++           +     +      + +    
Sbjct: 343 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYN 402

Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             Y S+       +       +  +D  + L+  ++  T   + ++A  QL   G MH  
Sbjct: 403 EHYDSLKGLSSWAYQTLDAHRKDKRDPCYNLEELEKSLTYDDLWNSAQLQLVREGKMHGF 462

Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------- 402
           LRM  A                         LDG   +   G  W+    +D        
Sbjct: 463 LRMYWAKKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAI 522

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428
               R  N     ++FD    F+  +
Sbjct: 523 FGKVRYMNYQGCRRKFDVNA-FVMRY 547


>gi|1401030|dbj|BAA05042.1| photolyase [Drosophila melanogaster]
          Length = 640

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 144/446 (32%), Gaps = 32/446 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61
           +++   + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+
Sbjct: 197 SSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFM 253

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L +V++      I F     S    ++E L  +   + +  +     +    + R  
Sbjct: 254 MGGLQEVEQQCRALDIPFHLLMGS----AVEKLPQFVKSKDIGAVVC--DFAPLRLPRQW 307

Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176
           +  + K L   V     D   ++P     +      + +       L + L +     R 
Sbjct: 308 VEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVRH 367

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235
                 +    V  S          +  +  +   G + A   L +FC  ++ ++ ++R+
Sbjct: 368 PHGTGCKNVNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 427

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P     S LSP+L  G +S ++C   ++           +     +      + +    
Sbjct: 428 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYN 487

Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             Y S+       +       +  +D  + L+  ++  T   + ++A  QL   G MH  
Sbjct: 488 EHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGF 547

Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------- 402
           LRM  A                         LDG   +   G  W+    +D        
Sbjct: 548 LRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAI 607

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428
               R  N     ++FD    F+  +
Sbjct: 608 FGKVRYMNYQGCRRKFDVNA-FVMRY 632


>gi|290953049|ref|ZP_06557670.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 150

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 2/152 (1%)

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
              +   PS+        + +      +    +AWK G TG+P+IDA MR L    W++ 
Sbjct: 1   MQKLEDQPSIEYENLHSAYDQLRTELLNQQCFEAWKTGNTGYPMIDACMRALIATRWLNF 60

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           R+R +  SF    L +DWR+   Y      D +   +    Q    +G   +   RI+NP
Sbjct: 61  RMRAMLMSFASYHLWLDWRVTSLYLAGLFTDYEPGIHYSQVQMQ--SGTTGINSIRIYNP 118

Query: 412 TIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
             Q     P G FIR WLPEL NV  + IH P
Sbjct: 119 IKQSIDQYPNGEFIRRWLPELENVSNENIHTP 150


>gi|108803508|ref|YP_643445.1| deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764751|gb|ABG03633.1| Deoxyribodipyrimidine photo-lyase type II [Rubrobacter xylanophilus
           DSM 9941]
          Length = 464

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 155/443 (34%), Gaps = 43/443 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W++   R   N AL  A   ++A    ++ VF  T         + R   F+   L  
Sbjct: 27  LYWMQASQRAEHNHALEYAVRQANALGRSLVCVFGLTDGYPEA---NLRHYAFMLEGLAD 83

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+K L ++GI F   + S  + ++E        +R   +  +R Y  ++VR  + +    
Sbjct: 84  VEKGLRRRGIGFAVRRGSPDEVALEA------GRRAALIVTDRGYLRHQVRWRENV--AA 135

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ---ADLRSLPVPAIRL 184
           +        +  VL+P  +  +      + + P     ++  +          P     L
Sbjct: 136 EAGCRVTQVESDVLVPVETASDRREYAARTFRPRVSRHLERFLVGLGTTALRRPSAGAGL 195

Query: 185 TGPVTPSNIPRFFDYPFQ----AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            G           +         +  ++  G + A  +LR+F +E +  Y   RD P   
Sbjct: 196 GGLDLSDPGRVLEELDLDRGVGPVGHLYRGGTRAAKRLLRRFLEEGLPGYASGRDQPHAG 255

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYP 299
           G S +S YL  G +SP     R +         P+    ++L EL + RE   + + + P
Sbjct: 256 GVSHMSKYLHFGHISPLYVALRAR-----GSGAPEEDVGAFLEELVVRRELAVNFVRYTP 310

Query: 300 SVCMGKPFIPWTEKI--EWNKDSHLLQAWK----QGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +         W      E   DS      +    +  T  P  +AAM ++   G++HN +
Sbjct: 311 NYDSYSCLPEWARSTLEEHRGDSRERVYTRRQLEEAATHDPYWNAAMVEMRHTGYLHNHM 370

Query: 354 RMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV------P 404
           RM          +     +R          LDG   ++     W     +          
Sbjct: 371 RMYWGKRILGWTRTPQHAYRTALYLNNRYFLDGRDPNSYANVAWVFGLHDRPWKERPVFG 430

Query: 405 YFRIFNPTIQGKRFDPQGTFIRH 427
             R  + +   ++ DP G ++R 
Sbjct: 431 KVRYMSRSGLERKTDP-GAYVRR 452


>gi|195119354|ref|XP_002004196.1| GI19782 [Drosophila mojavensis]
 gi|193909264|gb|EDW08131.1| GI19782 [Drosophila mojavensis]
          Length = 538

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/440 (15%), Positives = 140/440 (31%), Gaps = 33/440 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+   L +
Sbjct: 100 VYWMSRDARVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNATL---RHYKFMLGGLQE 156

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LEK 125
           V++   +  + F          ++E L  +   +++  +     +    + R  +  + K
Sbjct: 157 VEQQCRELNVSFHLLLGP----AVERLPQFVKDEKIGAVIC--DFAPLRLPRQWVEDVVK 210

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLRSLPVPA-IR 183
            L   V     D   ++P     +      + +       L + L +           ++
Sbjct: 211 ALPAHVPLTQVDAHNVVPLWVTSDKQEYAARTIRNKINSKLSEYLTEFPPLIKHAYGNVK 270

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            +  V  +                +   G   A   L  FC  ++ ++ ++R+ P     
Sbjct: 271 GSRSVDWTAAYEMLSCDKSVDAVEWAKPGYTAACRQLYDFCTRRLRHFNDKRNDPMADAL 330

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSP+L  G +S ++C   +           ++     +      + + +    Y S+ 
Sbjct: 331 SGLSPWLHFGQISAQRCVLEVGRYKTIYKESVEAYFEEAIVRRELADNFCYYNEHYDSL- 389

Query: 303 MGKPFIPWTEKIEWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
            G     +       KD     + L+  +   T   + ++A  QL   G MH  LRM  A
Sbjct: 390 KGLYSWAYESLQAHRKDKRSPCYSLEELEHSRTYDDLWNSAQLQLVKEGKMHGFLRMYWA 449

Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRI 408
                  +                 LDG   +   G  W+    +D            R 
Sbjct: 450 KKILEWTETPEQALEYSILLNDKYSLDGRDPNGYVGCMWSIGGIHDQGWKERAIFGKIRY 509

Query: 409 FNPTIQGKRFDPQGTFIRHW 428
            N     ++FD    ++  +
Sbjct: 510 MNYQGCKRKFDVNA-YVMRY 528


>gi|27804353|gb|AAO22533.1| cryptochrome 2 [Brassica rapa subsp. pekinensis]
          Length = 157

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 5/157 (3%)

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF----V 268
            NA  +L +F ++++  Y +         TS LSPYL  G +S R+ +   + +      
Sbjct: 1   SNADKLLTEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWAR 60

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
           D   + +  A  +L  +  R++ R++   +P     +  +       W+ D    +AW+Q
Sbjct: 61  DKNGQGEESAVLFLRGIGLRDYSRYICFNFP-FTHEQSLLSHLRFFPWDADVEKFKAWRQ 119

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           G TG+P++DA MR+L   GWMHNR+R+I +SF VK L
Sbjct: 120 GRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFL 156


>gi|254561673|ref|YP_003068768.1| deoxyribodipyrimidine photolyase [Methylobacterium extorquens DM4]
 gi|254268951|emb|CAX24912.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
           extorquens DM4]
          Length = 467

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 143/448 (31%), Gaps = 36/448 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---ARQS 58
           K        L  ++  +R+  N AL  A   ++   + + +        +G     AR  
Sbjct: 15  KPREGAGYVLYLMQQAMRVPFNPALELAIEEANRLELPLLVCFGLLDGANGFPEANARHY 74

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L     +L ++GI F   + +  + +I+             L  +R Y   + R
Sbjct: 75  AFLLQGLADAAAALEKRGIAFLLRRATPAEVAIDL------SADAALLVLDRGYLAIQKR 128

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSL 177
               +E+  Q R++    +  V++P  ++        +   P  RK     L   + R +
Sbjct: 129 WYGAIEREAQCRIV--QVEGDVVVPLETVSTKHEYAARTLRPKLRKLWDDYLEPVEPRGV 186

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEK 226
             PA  L   +   +     D P + +  +           F  G   A   L +F +  
Sbjct: 187 DHPAKGLIQRLKLKDGLDVSD-PEKLLAKLTLDTTVGPVKRFRGGHTEAAGHLERFLEHA 245

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
              Y   R+ P     S +SPYL  G +SP +    ++           +     +    
Sbjct: 246 FAGYGAGRNKPEAGAASHMSPYLHFGHISPVEIALAIRAAKDADDDDRSAYLEELIVRRE 305

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQ 342
               +      Y       P        E   D       ++    G T     + AMR+
Sbjct: 306 LAMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLYSEEELAAGKTHDHYWNVAMRE 365

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTG 399
           +   G+MHN+LRM     +++                    LDG  A++     W     
Sbjct: 366 MRETGYMHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLH 425

Query: 400 NDSVPYFRIFNPTIQG-----KRFDPQG 422
           +      +IF           ++FD  G
Sbjct: 426 DRPWQTRQIFGSVRYQSENSLRKFDANG 453


>gi|261047494|gb|ACX54506.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 162

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/162 (35%), Positives = 91/162 (56%), Gaps = 1/162 (0%)

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
             +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW
Sbjct: 2   ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           +QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL 
Sbjct: 61  RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R W
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRW 162


>gi|322433858|ref|YP_004216070.1| DNA photolyase FAD-binding protein [Acidobacterium sp. MP5ACTX9]
 gi|321161585|gb|ADW67290.1| DNA photolyase FAD-binding protein [Acidobacterium sp. MP5ACTX9]
          Length = 470

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 151/447 (33%), Gaps = 37/447 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W++   R  DN A+  A   ++   + + +           + R   F+   L  +++
Sbjct: 31  VYWMQRAQRGIDNHAVNLAVEVANHLGLPLVVYFAAISNFPHANLRHYAFLNQGLPDIEE 90

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH- 129
            L+ + I F   +  +     E  +      +   +  +     N +R  +   K L   
Sbjct: 91  DLAARNITFLMRRAPH-----ESHEQLLADVKAAIVIGDE----NPMREPERWRKTLAEK 141

Query: 130 -RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
            R+   + D  V++P   I       Y +     + L + LV  +      P  R     
Sbjct: 142 IRIPFWTVDTDVVIPSSLIEKAQYGAYTIRPRLYRLLPEYLVPYENPHAQHPWHR-PKSF 200

Query: 189 TPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
              ++       ++ +D        +  G    L  L++F  + +  Y  QR+ P   GT
Sbjct: 201 KSDSVHEDITMGWKDLDRSVGPVEYWKGGTHAGLAQLKRFTTKLLGDYEVQRNKPEADGT 260

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S +SPYL  G L P+     +            +    +   + WRE   + + F     
Sbjct: 261 SSMSPYLHYGHLGPQTIALAVDAAAKANPKLQSARDSYFNELIAWRELAVNFVRFSSVYD 320

Query: 303 MGKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             +    W +K   E  +D        +      T   + +AA  Q+   GWMHN +RM 
Sbjct: 321 TAECAENWAQKTIAEHARDEREHIYTTKQLEFAETYDTLWNAAQIQMVRHGWMHNYMRMY 380

Query: 357 TASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYF 406
            A        D+    ++         +DG   +   G  WA     D            
Sbjct: 381 WAKKILEWTPDVDTAMKVCVYLNDKYFIDGRDPNGYAGIAWAILGKFDRAWGTRPVFGKR 440

Query: 407 RIFNPTIQGKRFDPQGTFIRH--WLPE 431
           R  +     K+FD +  +IR    LPE
Sbjct: 441 RYMSGASTSKKFDSKA-YIRQMNALPE 466


>gi|254461840|ref|ZP_05075256.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083]
 gi|206678429|gb|EDZ42916.1| conserved hypothetical protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 419

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 115/295 (38%), Gaps = 16/295 (5%)

Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIG 252
            D   Q   P F       L  L +F +     Y   R+           S LSP++   
Sbjct: 8   ADLSQQLEIPNFKPTRAAGLARLAQFAERTGDLYDRCRNYDLGPEHRANVSALSPWIRHR 67

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           +++  +      +          + +  +++E+ WR +++  +  +P+V          +
Sbjct: 68  LITETEVLTATLDAH------SFNASERFVHEVFWRTYFKGWLEHHPTVWSAYQAGLLRQ 121

Query: 313 KIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                KD  L   +     G TG    D   ++L T G++HN  RM  AS  +  L + W
Sbjct: 122 LKSAGKDRRLAANYAAAMAGETGIDGFDDWTKELLTTGYLHNHARMWFASIWIFTLGLPW 181

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQG-KRFDPQGTFIRH 427
            +G ++F+  L+DGD ASN   W+W A       PY  R+ N +    +RF P       
Sbjct: 182 ELGADFFLRHLMDGDPASNTLAWRWVAGIQTKGRPYVARVSNISKFTDQRFSPLHQLNTQ 241

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
             P L+       H   +     +++ +Y L + +       TL   +AAK  +L
Sbjct: 242 VEP-LSEEADHQRHPLPNAATSAEITGDYLLLVTEDDMQVEETLPHPHAAKIGAL 295


>gi|302843525|ref|XP_002953304.1| class II photolyase [Volvox carteri f. nagariensis]
 gi|300261401|gb|EFJ45614.1| class II photolyase [Volvox carteri f. nagariensis]
          Length = 589

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 87/481 (18%), Positives = 143/481 (29%), Gaps = 58/481 (12%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACH------------------------NSDAKV 37
           + T      + W+  D RI DN AL  A                          +S+ +V
Sbjct: 43  EGTIGNGPVVFWMSRDQRIEDNWALLHAIEVAQQNHRQQSAAASSGGGGSSSSSSSEPQV 102

Query: 38  IAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY 97
              F   P      G  ARQ  F+   L ++Q  L  KGI F   +        + +   
Sbjct: 103 AVAFNLVPAFL---GAGARQFGFMLRGLRELQPKLEAKGIAFFLLKGDPARTLPDLVTRL 159

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
                VT       Y    + R    +      V     D   ++P     +      + 
Sbjct: 160 GAGLLVT------DYSPLRLGRQWREQVCSSVPVPVHEVDAHNVVPVWVASDKREVGART 213

Query: 158 YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGE 212
             P     +   +        +P         P N     +                 GE
Sbjct: 214 LRPKIHKHLPEFLTDFPEVPQLPPWSHEVKPEPVNWETLLEEVLTRGSAVPEVDWCKPGE 273

Query: 213 QNALHILR---KFC-KEKVYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEF 267
             AL  L+    F    ++  Y  +R+ PA     S LSPYL  G L+P++      +  
Sbjct: 274 DAALQALQGPAGFLSSTRLSLYDSKRNDPATPRALSNLSPYLHFGQLAPQRAALEAAKHR 333

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-CMGKPFIPWTEKIEWNKDSHLL--Q 324
                  +S     +      + + H    Y S+ C  +      EK   +K   L   +
Sbjct: 334 AKFKAAVESFLEELVVRRELSDNFCHYTPNYDSLACAAEWARETLEKHRGDKREFLYTRE 393

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLL 381
             + G T   + +A   ++  +G MH  +RM  A               I         L
Sbjct: 394 QLEAGRTHDELWNACQWEMVHVGKMHGYMRMYWAKKILEWTPGPEEAIEIAIYLNDRYEL 453

Query: 382 DGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQGKRFDPQG--TFIRHWLPEL 432
           DG   S   G  W+ +  +D            R  N     ++FD +    ++   + E+
Sbjct: 454 DGRDPSGYVGVMWSMAGIHDMGWTERPIFGKIRYMNYNGCKRKFDIKAYCAYVDRLVGEV 513

Query: 433 N 433
            
Sbjct: 514 R 514


>gi|85709235|ref|ZP_01040300.1| DNA photolyase-like protein [Erythrobacter sp. NAP1]
 gi|85687945|gb|EAQ27949.1| DNA photolyase-like protein [Erythrobacter sp. NAP1]
          Length = 412

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 17/223 (7%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPA-------IQGTSQLSPYLSIGVLSPRQCW 260
           F    +  L  L +F       Y   R+          +   SQLSP+L  G+LS R+  
Sbjct: 3   FTPDRKAGLDRLAEFAPRSGSAYASNRNYDDGVPEDGMLSNVSQLSPWLHAGLLSEREVI 62

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
                E           A  ++ E+ WR +++  +   PSV            I    +S
Sbjct: 63  LAALNEH------GPGKAEKFIAEVFWRVYFKGYLEQRPSVWDAYKQGRDGALIAVENNS 116

Query: 321 HLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
            L + +++   G TG    D  +R+L   G++HN  RM  AS  +  L +DW++G ++F+
Sbjct: 117 GLAKVYEEAVAGRTGIEAFDQWVRELVQTGYLHNHARMWFASVWIFTLKLDWQLGADFFL 176

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFNPTIQGKRFD 419
             L+DGD ASN   W+W A        Y  R  N     +R D
Sbjct: 177 RHLMDGDAASNTLSWRWVAGLHTKGKNYAARASNIKRYTERRD 219


>gi|147862663|emb|CAN79335.1| hypothetical protein VITISV_026088 [Vitis vinifera]
          Length = 514

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 92/468 (19%), Positives = 162/468 (34%), Gaps = 48/468 (10%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
               + W+  D R+ DN AL  A   ++   + V IA     +  G  ARQ  F+   L 
Sbjct: 33  AGPVVYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLFDQFLGAKARQLGFMLRGLR 92

Query: 67  QVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCL-QQRVTKLFYNRQYEINEVRRDKLLE 124
            + + L Q   I F   Q   F+ S   LDS+ + +   + L  +        +  + + 
Sbjct: 93  LLHRDLEQTLQIPFFLFQAYTFEISASLLDSHSVWEYGASLLVTDFSPLREVQKWKEEIC 152

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           KR+  +V     D   ++P   + +  L+        +   +      D  +L  P+I+ 
Sbjct: 153 KRVGKKVSIHEVDAHNIVPTW-VASEKLEYSARTIRGKINKLLPEYLIDFPTLQPPSIKW 211

Query: 185 TGPVTPSNIPRF----FDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQRD 235
            G     +             +  +  +   GE  A+ IL      F  +++  Y   R+
Sbjct: 212 AGTNQSIDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGFLTKRLKNYSTDRN 271

Query: 236 IPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRH 293
            P   G  S LSPYL  G +S ++C    K+   +           +L ELI  RE   +
Sbjct: 272 NPLKPGALSGLSPYLHFGQISAQRCALEAKKIQKNCP----QAVDVFLEELIVRRELADN 327

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIG 347
              + P     +    W  K   +  S   +        +   T  P+ +A+  ++   G
Sbjct: 328 FCFYQPRYNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWNASQLEMVHYG 387

Query: 348 WMHNRLRM--------ITASFLVKDLLVDWRIGEEYFM-------SQLLDGDLASNNGGW 392
            MH  +R             +  K +L   R  EE             +DG   +   G 
Sbjct: 388 KMHGFMRQEMQDITILEIQMYWAKKILEWTRGPEEALAISIYLNDKYEIDGRDPNGYVGC 447

Query: 393 QWAASTGNDS-------VPYFRIFNPTIQGKRFDPQG--TFIRHWLPE 431
            W+    +D            R  N     ++FD  G   +++  + E
Sbjct: 448 MWSICGVHDQGWQERQIFGKIRYMNYAGCKRKFDVDGYIAYVKRLVTE 495


>gi|269839711|ref|YP_003324403.1| deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791441|gb|ACZ43581.1| Deoxyribodipyrimidine photo-lyase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 449

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 146/453 (32%), Gaps = 41/453 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           +  +  D R+ DN AL  A   +  + + + +    + R  G S     F+   L +V +
Sbjct: 2   VYVMSRDQRVDDNFALLLAQREALERRLPLVVLFVLRERPGGRSREHFLFMLDGLEEVSR 61

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L + GI +   Q S    ++  L     +     ++ +         R +LL +  +  
Sbjct: 62  RLQELGIAWVLRQGSPSRTTLATL----RELDAASVYLDFSPLRGARARAELLAREFE-- 115

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGP 187
                 D   ++P   + +               L+   ++A  R +  P   A  L   
Sbjct: 116 GSTHVVDAHNVIPAWEVSDKQEVAAHTMRSKVHKLLGRYLEAPPRIVRHPYSLADHLETL 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                       P   I    P GE+ A   L+KF  EK+ YY   R+       S LSP
Sbjct: 176 SFEQARDIVHGLPACGIRIAHPPGEKAARRHLQKFIDEKLEYYALLRNDVGRDFQSDLSP 235

Query: 248 YLSIGVLS--------------PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYR 292
           +L +G +S              P     R K            G  + L E+I  +E   
Sbjct: 236 WLHLGHISSLRVALQVIEAVGRPPLLLERAKLAEHSGQPSAYDGMNALLEEMIVRKELSD 295

Query: 293 HLMAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQA----WKQGYTGFPIIDAAMRQLNTI 346
           +     P     +    W  +      +D          W++  T     +AA  QL  +
Sbjct: 296 NFCLHNPHYKSLQGAPEWGRQTLEAHREDPREFTYSLQEWEEARTHDRAWNAAQTQLRRV 355

Query: 347 GWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           G +H  +RM  A       +       +         +DG   +   G  W+    +D  
Sbjct: 356 GKIHGYMRMYWAKKMLEWSRSPEEAVEMCVYLNDKYSVDGGDPNGYAGILWSIGGLHDHP 415

Query: 404 -------PYFRIFNPTIQGKRFDPQGTFIRHWL 429
                     R  +     +++D   ++ + WL
Sbjct: 416 WKERPVFGKIRYMSAEGIRRKYDLD-SYCKRWL 447


>gi|260431372|ref|ZP_05785343.1| deoxyribodipyrimidine photo-lyase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415200|gb|EEX08459.1| deoxyribodipyrimidine photo-lyase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 461

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 15/237 (6%)

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLS 250
           RF +         F     N L  L++F      +Y   R+           S LSP+L 
Sbjct: 51  RFPELAEAKETISFRPTRANGLARLKQFVGRTGRHYASTRNYDFGTERRSNVSGLSPWLR 110

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM--GKPFI 308
             +++  +    +      L     + A  ++ E+ WR +++  +   PSV     +   
Sbjct: 111 HRLITETEVLAAV------LASHNFNAAEKFVQEVFWRTYFKGWLEQRPSVWTLYQRDLS 164

Query: 309 PWTEKIEWNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
              E++  +            G TG    D  +R+L   G++HN  RM  AS  +  L +
Sbjct: 165 HACERLSDDDCLRARFSDAVNGNTGIDCFDHWVRELLVTGYLHNHARMWFASIWIFTLRL 224

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQG 422
            W++G ++F+  LLDGD ASN   W+W          Y  R  N     + RF P+G
Sbjct: 225 PWQLGADFFLRHLLDGDPASNTLSWRWVGGLHTKGKTYLARPDNIAKYTEGRFQPKG 281


>gi|31322270|gb|AAP22941.1| cryptochrome 2 [Arvicanthis ansorgei]
          Length = 139

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366
            P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL 
Sbjct: 8   NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 67

Query: 367 VDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           V W  G   F   LLD D + N G W W  S       +F  + P   G+R DP G +IR
Sbjct: 68  VSWESGVRVFDELLLDADFSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYIR 126

Query: 427 HWLPELNNVPTQY 439
            +LP+L   P++Y
Sbjct: 127 RYLPKLKGFPSRY 139


>gi|224371018|ref|YP_002605182.1| DNA deoxyribo-dipyrimidine photolyase family protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223693735|gb|ACN17018.1| DNA deoxyribo-dipyrimidine photolyase family protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 453

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 158/443 (35%), Gaps = 42/443 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W++   R  +N AL  A + ++ +   V+ VF  T +       + R   F+   L +
Sbjct: 22  LYWMQQAQRAEENHALEYAIYQANQQDKMVVVVFSLTND---SPDANLRHYTFMLEGLNE 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            +KSL ++GI   +       + ++        ++ + +  +R Y  ++    K + +  
Sbjct: 79  TRKSLEKRGIRMIFRIGHPVKEVLDI------GRKASMIVCDRGYLRHQRAWRKAIAE-- 130

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA-LIQNLVQADLRSLPVPAIRLTG 186
           +        +  V++P   + + A        P     L Q L   +   L  P++ +  
Sbjct: 131 KSGCPVVQVETDVVIPVEQVSDKAEYAAYTIRPKISRQLDQYLTPIEHIELRNPSLEIAL 190

Query: 187 PVTPSNIPRFF------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             T     +        D   Q +  +F  G   A      F  +    Y   R+ P   
Sbjct: 191 KSTELERIKTVLKDLNVDDSIQPVSHIFRGGTSEAKARFDVFLDQHFSRYAVHRNEPKYL 250

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP 299
             S +SPYL  G +SP     ++K        + +  A ++L ELI  RE   + + F P
Sbjct: 251 AVSCMSPYLHFGQISPLYLALKIKA----CKNEAQEAAAAYLEELIVRRELAANFVYFNP 306

Query: 300 SVCMGKPFIPWTEKI--EWNKDSHLLQAWK----QGYTGFPIIDAAMRQLNTIGWMHNRL 353
                     W  K   E  KD       K       T     +AAM+++   G+MHN +
Sbjct: 307 YYDSLGCLPAWPTKTLAEHEKDVRDPVYTKSQLIACRTHDEYWNAAMKEMIVTGFMHNYM 366

Query: 354 RMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV------P 404
           RM     +++      R  E       +  LDG   ++  G  W     + +        
Sbjct: 367 RMYWGKKILEWSPTPLRAYETMIDLNNAYFLDGRDPNSYAGVGWIFGLHDRAWFERPIFG 426

Query: 405 YFRIFNPTIQGKRFDPQGTFIRH 427
             R    +   ++ D +G ++  
Sbjct: 427 KVRYMAASGLERKCDIKG-YVDR 448


>gi|24586398|ref|NP_724613.1| photorepair, isoform B [Drosophila melanogaster]
 gi|21627730|gb|AAM68868.1| photorepair, isoform B [Drosophila melanogaster]
          Length = 535

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 143/446 (32%), Gaps = 32/446 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61
           +++   + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+
Sbjct: 92  SSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFM 148

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L +V++      I F     S    ++E L  +   + +  +     +    + R  
Sbjct: 149 MGGLQEVEQQCRALDIPFHLLMGS----AVEKLPQFVKSKDIGAVVC--DFAPLRLPRQW 202

Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176
           +  + K L   V     D   ++P     +      + +       L + L       R 
Sbjct: 203 VEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFPPVVRH 262

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235
                 +    V  S          +  +  +   G + A   L +FC  ++ ++ ++R+
Sbjct: 263 PHGTGCKNVNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 322

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P     S LSP+L  G +S ++C   ++           +     +      + +    
Sbjct: 323 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYN 382

Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             Y S+       +       +  +D  + L+  ++  T   + ++A  QL   G MH  
Sbjct: 383 EHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGF 442

Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------- 402
           LRM  A                         LDG   +   G  W+    +D        
Sbjct: 443 LRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAI 502

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428
               R  N     ++FD    F+  +
Sbjct: 503 FGKVRYMNYQGCRRKFDVNA-FVMRY 527


>gi|8134633|sp|Q28811|PHR_POTTR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|1401039|dbj|BAA05041.1| photolyase [Potorous tridactylus]
          Length = 532

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 67/433 (15%), Positives = 135/433 (31%), Gaps = 21/433 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN A   A   +  + + + +         G + R   F+   L +V +
Sbjct: 100 VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVCFCLAPCFLGATIRHYDFMLRGLEEVAE 159

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              +  I F        D     L ++     +  +  +    ++  +  K ++  L  +
Sbjct: 160 ECEKLCIPFHLLLGLPKD----VLPAFVQTHGIGGIVTDFSPLLHHTQWVKDVQDALPRQ 215

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTGPV 188
           V     D   ++P     +      +         + + +     +   P  +     PV
Sbjct: 216 VPFVQVDAHNIVPCWVASDKQEYGARTIRHKIHDRLPHFLTEFPPVICHPYTSNVQAEPV 275

Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             +             +  +   G  + L +L+ F  E++ Y+   R+ P     S LSP
Sbjct: 276 DWNGCRAGLQVDRSVKEVSWAKPGTASGLTMLQSFIAERLPYFGSDRNNPNKDALSNLSP 335

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +   G +S ++    +++          +     +      + +      Y  +     +
Sbjct: 336 WFHFGQVSVQRAILEVQKHRSRYPDSVTNFVEEAVVRRELADNFCFYNKNYDKLEGAYDW 395

Query: 308 IPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---L 361
              T ++        L + +Q   G T  P+ +AA  Q    G MH  LRM  A      
Sbjct: 396 AQTTLRLHAKDKRPHLYSLEQLESGKTHDPLWNAAQMQTVKEGKMHGFLRMYWAKKILEW 455

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQ 414
            +                 LDG   +   G  W+    +D            R  N    
Sbjct: 456 TRSPEEALEFAIYLNDRFQLDGWDPNGYVGCMWSICGIHDQGWAEREIFGKIRYMNYAGC 515

Query: 415 GKRFDPQGTFIRH 427
            ++FD    F R 
Sbjct: 516 KRKFDV-AEFERK 527


>gi|171684045|ref|XP_001906964.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941983|emb|CAP67635.1| unnamed protein product [Podospora anserina S mat+]
          Length = 813

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 5/141 (3%)

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
           + +L+ +  G TG  +IDA+ R+L   G+  NR R   ASFL K L +DWR G E++   
Sbjct: 499 AKILERFNLGTTGMGLIDASQRELLHTGYTSNRARQNVASFLAKHLDIDWRYGAEWYEML 558

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT-Q 438
           L+D D++SN   WQ+ A  GND   + RIFNP  QG  +DP G+++R W+PE++ +   +
Sbjct: 559 LVDYDVSSNWANWQYVAGVGNDPRGHMRIFNPVKQGFEYDPSGSYVRTWIPEVSGLEKLE 618

Query: 439 YIHAPHSW----LDKNDLSLN 455
               P +     L+K  LS N
Sbjct: 619 NAFQPWTASKEELEKTGLSGN 639



 Score =  100 bits (248), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 112/366 (30%), Gaps = 74/366 (20%)

Query: 1   MKATTA-MSVHLVWLRNDLRITDNKALYAACHNSDAK----VIAVFIATPEQ-------- 47
           M  + A  ++ +  +R DLR +DN   +AA    D +     + V++   +Q        
Sbjct: 21  MTVSKAPQNILIHIIRRDLRTSDNPLFHAAATAPDEEKFDAYLPVYVFDAQQIDVSGFIQ 80

Query: 48  ---------------WRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE 92
                             H     ++ F+  ++  + ++L +             D    
Sbjct: 81  SAGATNPYGSPRSQVAGYHRCGPHRAKFLGEAVWDLSETLKELKSGLFIRVGRIPDVVET 140

Query: 93  WLDSYCLQ-QRVTKLFYNRQYEINEVRRDKLLEKRLQHR-------VICKSFDDSVLLPP 144
            +     +  ++  ++        E   +K +    +         V  K F D   +  
Sbjct: 141 LVSELAKKDAKIGAVWMTSHEGSEEKADEKAVASLCKKVGAKWKLWVDEKYFIDDCRVSS 200

Query: 145 GSILNHALQMYKVYTPF---------RKALIQNLVQADLRSLPVPA-----IRLTGPVTP 190
            S    +    +    F         R +    LV        +P      +        
Sbjct: 201 QSTKRSSCPCARSLVRFFRLSRRVHCRLSFDAALVAPQSSPFHIPDSLDRLVEFLVAPVK 260

Query: 191 SNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVY-YYVEQRD-IPAIQGTSQLSP 247
             +P   +YP  A     +  GE  AL  L+          Y   R+ +   + +++LS 
Sbjct: 261 DFLPNKPEYPKGAESAHPYQGGEHAALQRLKDLISSGAATTYDTTRNGLLGTEFSTKLSA 320

Query: 248 YLSIGVLSPRQCWNRL---------------------KEEFVDLLIKPKSGAFSWLNELI 286
           +L+ G ++ RQ    +                     KEE +       +G  S   EL+
Sbjct: 321 FLAQGCITARQVHAAMDSFERGTDPAFKDVEGFGALTKEEGMSEDEAQNTGMESIRTELL 380

Query: 287 WREFYR 292
           WR++ R
Sbjct: 381 WRDYMR 386


>gi|24586396|ref|NP_523653.2| photorepair, isoform A [Drosophila melanogaster]
 gi|7304148|gb|AAF59185.1| photorepair, isoform A [Drosophila melanogaster]
 gi|19527513|gb|AAL89871.1| RE21178p [Drosophila melanogaster]
 gi|220948232|gb|ACL86659.1| phr-PA [synthetic construct]
 gi|220960434|gb|ACL92753.1| phr-PA [synthetic construct]
          Length = 555

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 143/446 (32%), Gaps = 32/446 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61
           +++   + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+
Sbjct: 112 SSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFM 168

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L +V++      I F     S    ++E L  +   + +  +     +    + R  
Sbjct: 169 MGGLQEVEQQCRALDIPFHLLMGS----AVEKLPQFVKSKDIGAVVC--DFAPLRLPRQW 222

Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176
           +  + K L   V     D   ++P     +      + +       L + L       R 
Sbjct: 223 VEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSVFPPVVRH 282

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235
                 +    V  S          +  +  +   G + A   L +FC  ++ ++ ++R+
Sbjct: 283 PHGTGCKNVNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 342

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P     S LSP+L  G +S ++C   ++           +     +      + +    
Sbjct: 343 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYN 402

Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             Y S+       +       +  +D  + L+  ++  T   + ++A  QL   G MH  
Sbjct: 403 EHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGF 462

Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------- 402
           LRM  A                         LDG   +   G  W+    +D        
Sbjct: 463 LRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAI 522

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428
               R  N     ++FD    F+  +
Sbjct: 523 FGKVRYMNYQGCRRKFDVNA-FVMRY 547


>gi|46560024|gb|AAT00492.1| cryptochrome 2 [Cebus apella]
          Length = 166

 Score =  140 bits (352), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 56/168 (33%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 229 YYVEQRDIPA--IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
            Y   R      +   + LSPYL  G LS R  + RL + +  +  +  +   S   +L+
Sbjct: 1   NYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVK-RNSTPPLSLFGQLL 59

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF+       P     +   P   +I W+++   L  W +G TGFP IDA M QL   
Sbjct: 60  WREFFYTAATNNPRFDRMEG-NPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQE 118

Query: 347 GWMHNRLRMITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           GW+H+  R   A FL + DL V W  G   F   LLD D + N G W 
Sbjct: 119 GWIHHLARHAVACFLTRGDLWVSWESGVRVFDDVLLDADFSVNAGSWM 166


>gi|5081541|gb|AAD39433.1|AF129458_1 class II DNA photolyase [Chlamydomonas reinhardtii]
          Length = 612

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 82/462 (17%), Positives = 140/462 (30%), Gaps = 42/462 (9%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISAR 56
             +      + W+  D R+ DN AL  A   +       +V   F   P      G  AR
Sbjct: 60  PGSIGKGPVVYWMSRDQRLADNWALLHAIEAAQGAAGSSQVAVAFNLVPAFL---GAGAR 116

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           Q  F+   L Q+   L  +GI F   +        + +        VT       Y    
Sbjct: 117 QFGFMLRGLRQLAPRLEARGIKFYLLKGDPAHTLPQLVSGLGAGLLVT------DYSPLR 170

Query: 117 VRR--DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQNLV 170
           + R     +   L   V     D   ++P  +         +   P         ++   
Sbjct: 171 LGRTWRDQVCSALGS-VPVHEVDAHNVVPVWAASEKREVGARTLRPKIHKALPEFLREFP 229

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHIL---RKFCK-E 225
           +        PA+          I           +  +   GE+ AL  L   R F    
Sbjct: 230 EVPTLPAWTPAVAPEAVDWDGLISEVLSRGADVPEVEWCTPGEEAALEALTGPRGFLSPA 289

Query: 226 KVYYYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           ++  Y  +R+ PA     S LSPYL  G L+P++      +         +S     +  
Sbjct: 290 RLSLYDTKRNDPATPSALSGLSPYLHFGQLAPQRAALEAAKHRAKYKAAVESYLEELVVR 349

Query: 285 LIWREFYRHLMAFYPSV-CMGKPFIPWTEKIEWNKDSHLLQAWKQ--GYTGFPIIDAAMR 341
               + + H    Y S+    +      +K   +K   L    +   G T   + +AA  
Sbjct: 350 RELADNFCHYCPTYDSLEAAAEWARDSLDKHRTDKREFLYTRDQLECGATHDELWNAAQL 409

Query: 342 QLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           ++  +G MH  +RM  A       +                 LDG       G  W+ + 
Sbjct: 410 EMVHVGKMHGFMRMYWAKKILEWTQGPEQAIEWAIYLNDRYELDGRDPGGYTGVLWSMAG 469

Query: 399 GNDS-------VPYFRIFNPTIQGKRFDPQG--TFIRHWLPE 431
            +D            R  N     ++FD +    ++   + E
Sbjct: 470 VHDMGWAERAVFGKIRYMNYNGCKRKFDIKAYVAYVSKAVAE 511


>gi|31321921|gb|AAM50087.1| cryptochrome 4 [Gallus gallus]
          Length = 140

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 56/138 (40%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIGE 373
            W +D+  L  WK   TGFP IDA M QL   GW+H+  R   A FL + DL + W  G 
Sbjct: 1   RWYEDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGM 60

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELN 433
           + F   LLD D + N G W W  S       Y RIF P   G+R DP+G +IR +LP L 
Sbjct: 61  KVFEELLLDADYSINAGNWMW-LSASAFFHHYTRIFCPVRFGRRTDPEGQYIRKYLPILK 119

Query: 434 NVPTQYIHAPHSWLDKND 451
           N P++YI+ P +  ++  
Sbjct: 120 NFPSKYIYEPWTASEEEQ 137


>gi|145544633|ref|XP_001458001.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425820|emb|CAK90604.1| unnamed protein product [Paramecium tetraurelia]
          Length = 453

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 154/444 (34%), Gaps = 54/444 (12%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
            W++   R   N AL  A   ++ + I +F       +    + R  HF+   L Q++ S
Sbjct: 22  YWIQASQRTKYNHALELAIQKANQEQIPLFCFF-GLTKYPAANQRPYHFMLEGLQQLKTS 80

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L+ + I+F   + S  D +I         Q    L  +  Y    +R  K   K++   +
Sbjct: 81  LADRKILFGVAKQSPDDLAISI------AQNAKLLIVDCGY----LRIQKQWRKKVADTI 130

Query: 132 ICK--SFDDSVLLPPGSILNHALQMYKVYTP--------FRKALIQNLVQADLRSLPVPA 181
            C+    +  VL+P            K   P        F K L +  +   +  LP   
Sbjct: 131 DCQFIQVETDVLVPVEQASQKEEWAAKTIRPKIQSLTKYFAKELNEETLVKQMDKLPFQE 190

Query: 182 IRLTGPVTPSNIPRFFDYPFQ---AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             ++      +     D       +I   F  GE  A   L +F  +K+  Y + R+ P+
Sbjct: 191 YDISNITKVID-----DLGVDKSVSIVQQFKGGEIEAQKRLEEFLNKKLKNYAKNRNDPS 245

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
           +  TS LSPYL  G++SP   +         +   P     S+L ELI R        +Y
Sbjct: 246 LNATSNLSPYLHFGMISPLHIYLEA------MKFPPSESRESFLEELIVRRELSMNFCYY 299

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHL-------LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             +      +P   K    + +         L   ++  T     ++A  +    G +  
Sbjct: 300 NDLYDKYEGLPDWAKNTLQEHAKDKRDYIYTLDQLEKAKTHDVYWNSAQLEAIHKGKISG 359

Query: 352 RLRMITASFLVKDLLVDWRIGEEYF----MSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
            +RM     ++ +     +   EY         LDG  A+   G  W     +      +
Sbjct: 360 YMRMYWGKKVI-EWTESPQQAFEYLVFLNDKYHLDGRDANGYTGVAWCFGKHDRPWTGRK 418

Query: 408 IFNPTIQG------KRFDPQGTFI 425
           IF            ++FD  G ++
Sbjct: 419 IFGNIRYMIDSGLKRKFD-TGQYV 441


>gi|88604444|ref|YP_504622.1| deoxyribodipyrimidine photolyase [Methanospirillum hungatei JF-1]
 gi|88189906|gb|ABD42903.1| Deoxyribodipyrimidine photo-lyase type II [Methanospirillum
           hungatei JF-1]
          Length = 448

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 142/436 (32%), Gaps = 42/436 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+++ +R   N AL  A   S+     +I VF           +      F++  L  
Sbjct: 21  LYWMQSAVRTRYNHALEYAIERSNELKKPLIVVFCLDHSYPEATPV---HYRFLWEGLQD 77

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +SL+++GI FQ    S  D      D          +  ++ +   +    + +    
Sbjct: 78  VNRSLTERGIGFQILSGSPVDIIPRIAD------DACMMVTDQGWTRLQREWRQKVIDTA 131

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF----RKALIQNLVQADLRSLPVPAIR 183
             +V+    +  +++P              + P       A +  L+   ++        
Sbjct: 132 PCKVVIVETN--LIVPVHVASPKEEWSAGTFRPKITRQLPAFLHPLICRHVQGESTDCEP 189

Query: 184 LTG-PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            TG PV           P        P GE  A H L  F  E +  Y    + P    T
Sbjct: 190 FTGLPVGAEQQFTGKPLPEDTSTQFLPGGENAADHYLSAFLSETIDRYEATHNDPTAHAT 249

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSV 301
           S LS YL  G +SP     R+ E        P  G  ++L +LI  RE   + + + P  
Sbjct: 250 SYLSAYLHFGHISPLDIALRVMEH-------PGPGTNAFLEQLIVRRELSHNFVWYNPLY 302

Query: 302 CMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              +    WT       +I+  + S+    +++  T     +A    +   G++H  LRM
Sbjct: 303 DHYEGLPEWTRKSLEKHRIDTREYSYTPADFEECRTHDRAWNAMQLSMIRTGYLHGYLRM 362

Query: 356 ITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV------PYF 406
                +++                    LDG   +   G  W     +            
Sbjct: 363 YWGKKILEWTETPEDAYAIALYLNNRYELDGRDPNGYCGVAWCFGKHDRPWKERPVFGTI 422

Query: 407 RIFNPTIQGKRFDPQG 422
           R  N     ++F   G
Sbjct: 423 RYMNEAGLRRKFRLDG 438


>gi|50752305|ref|XP_422729.1| PREDICTED: similar to photolyase [Gallus gallus]
          Length = 499

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 137/437 (31%), Gaps = 27/437 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R+ DN A   A   +   +  +   F   P          R   F+   L +
Sbjct: 67  LYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPAFLDAT---IRHYGFMLRGLRE 123

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V K  ++  I F            + L S+ ++  V  L  +        +  + +++RL
Sbjct: 124 VAKECAELDIPFHVL----LGCPKDVLPSFVVEHGVGGLVTDFCPLRVPRQWVEEVKERL 179

Query: 128 QHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLT 185
              V     D   ++P   +          +       L + L +       P P     
Sbjct: 180 PEDVPFAQVDAHNIVPCWVASPKQEYSARTIRAKIHSQLPEFLTEFPPVIRHPHPPPNPP 239

Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+                +  +   G    L +L+ F  E++  +  QR+ P     S 
Sbjct: 240 EPIAWDACYSSLQVDRTVTEVAWATPGTAAGLAMLQSFITERLKSFGSQRNDPNKAALSN 299

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+   G +S ++    +++          +     +      E + +    Y SV   
Sbjct: 300 LSPWFHFGQVSTQRAILEVQKHRRVYKESVDAFVEEAVVRRELAENFCYYNENYDSVRGA 359

Query: 305 KPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF- 360
             +   T K+         + L   +Q  T  P+ +AA  Q+   G MH  LRM  A   
Sbjct: 360 YDWAQSTLKLHAKDKRPFLYKLPQLEQATTHDPLWNAAQLQMVREGKMHGFLRMYWAKKI 419

Query: 361 --LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNP 411
               +      +          LDG   +   G  W+    +D            R  N 
Sbjct: 420 LEWTRSPEEALQFAIYLNDRYELDGMDPNGYVGCLWSICGIHDQGWKERDVFGKIRYMNY 479

Query: 412 TIQGKRFDPQGTFIRHW 428
               ++FD    F R +
Sbjct: 480 AGCKRKFDVD-QFERRY 495


>gi|312881041|ref|ZP_07740841.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans
           DSM 12260]
 gi|310784332|gb|EFQ24730.1| Deoxyribodipyrimidine photo-lyase type II [Aminomonas paucivorans
           DSM 12260]
          Length = 464

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 141/449 (31%), Gaps = 38/449 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQS 58
           +A       L W+  + R  D+  L AA          +  +F  +P          R  
Sbjct: 23  RAPRREGPVLYWMGREQRARDHWGLAAAQELAAERRVPLACIFTLSPTFLGAPL---RAY 79

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L +  + L+ + I     +    +++  +   + +   VT       ++   VR
Sbjct: 80  AFLLRGLRETARELAARDIPLFLLRGDPPEEAARFAIRHRVALTVT------DFDPLRVR 133

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           R        +        D   ++P   +               + L+   +      L 
Sbjct: 134 RGWTEAFLERTEGTALEVDARNVVPCRFVSPKREWSAATLRRKLRPLLDRFLPFLPPPLE 193

Query: 179 VPAIRLTGPVTPSN--IPRFFDYPFQAI-DPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
              +  T    PS   +       F+ + +   P G       L  F +E +  Y   R+
Sbjct: 194 THPVPWTDTPPPSWDPLDLLASGSFEGVPESPLPPGSAAGQARLEAFLREGLPRYARDRN 253

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHL 294
            P  +G S LSPYL  G +SP++    +          P     ++L EL +  E   + 
Sbjct: 254 DPLREGQSGLSPYLHFGQISPQRAAWEVLRA-----DAPPEDREAFLEELVVRGELAENF 308

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQLNTIGW 348
               P     + F  W  K      S        L+  ++G T  P+ +AA R+L   G 
Sbjct: 309 CLHTPGYDTVEAFPDWARKTLAAHASDRRPALYSLRELEEGRTHDPLWNAAQRELVLTGR 368

Query: 349 MHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-- 403
           M   LRM     L++         R G        LDG       G  W     +D    
Sbjct: 369 MPGYLRMYWGKKLLEWTPSPEEALRAGVALNDRYELDGRDPKGYAGLAWCLGGVHDRPWP 428

Query: 404 -----PYFRIFNPTIQGKRFDPQGTFIRH 427
                   R        ++FD +  + R 
Sbjct: 429 SRPVFGSVRSMTAAGMARKFDVEA-YCRR 456


>gi|194863692|ref|XP_001970566.1| GG23307 [Drosophila erecta]
 gi|190662433|gb|EDV59625.1| GG23307 [Drosophila erecta]
          Length = 554

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 148/446 (33%), Gaps = 32/446 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61
           +++   + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+
Sbjct: 112 SSLGGVVYWMSRDGRVQDNWALLFAQRLAFKLELPLSVVFCLVPKFLNAT---IRHYKFM 168

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L +V++      I F          ++E L  +   + +  +     +    + R  
Sbjct: 169 MGGLQEVEQQCRALDIPFHLL----MGPAVEKLPEFVKSKDIGAVVC--DFAPLRLPRQW 222

Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176
           +  + K L   V     D   ++P     +      + +       L + L +     R 
Sbjct: 223 VEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSEFPPVVRH 282

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235
                 +    V  S          +  +  +   G + A   L +FC  ++ ++ ++R+
Sbjct: 283 PYGTGCKNVNVVDWSAAYASLQCDMEVGEVQWATPGYKGACQQLYEFCSRRLRHFNDKRN 342

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P     S LSP+L  G +S ++C   ++           +     +      + +    
Sbjct: 343 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCFYN 402

Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             Y S+       +       +  +D  + L+  ++  T   + ++A  QL   G MH  
Sbjct: 403 EHYDSLKGLSTWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGKMHGF 462

Query: 353 LRMITASFLVKDLLVDWRIGEE---YFMSQLLDGDLASNNGGWQWAASTGNDS------- 402
           LRM  A  +++      R  E          LDG   +   G  W+    +D        
Sbjct: 463 LRMYWAKKILEWTATPERALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAI 522

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428
               R  N     ++FD    F+  +
Sbjct: 523 FGKVRYMNYQGCRRKFDVNA-FVMRY 547


>gi|218530705|ref|YP_002421521.1| deoxyribodipyrimidine photo-lyase [Methylobacterium
           chloromethanicum CM4]
 gi|218523008|gb|ACK83593.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium
           chloromethanicum CM4]
          Length = 467

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 145/442 (32%), Gaps = 42/442 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---ARQSHFIYASLLQ 67
           L  ++  +R+  N AL  A   ++   + + +        +G     AR   F+   L  
Sbjct: 24  LYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLDGANGFPEANARHYAFLLQGLAD 83

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
              +L ++GI F   + +  + +I+             L  +R Y   + R    +E+  
Sbjct: 84  AAAALEKRGIAFLLRRATPAEVAIDL------SADAALLVLDRGYLAIQKRWYGEIEREA 137

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAIRLTG 186
           Q R++    +  V++P  ++        +   P  RK     L   +  ++  PA  L  
Sbjct: 138 QCRIV--QVEGDVVVPLETVSTKHEYAARTLRPKLRKLWDDYLEPVEPLTVDHPAEGLIQ 195

Query: 187 PVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEKVYYYVEQRD 235
            +   +     D P + +  +           F  G   A   L++F +     Y   R+
Sbjct: 196 RLKLKDGLDVSD-PEKLLAKLTLDTTVGPVKRFRGGYTEAAGHLKRFLEHAFAGYGAGRN 254

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-------NELIWR 288
            P     S +SPYL  G +SP +    ++           +     +       N +   
Sbjct: 255 KPEAGAASHMSPYLHFGHISPVEIALAIRAAKDADDDDRSAYLEELIVRRELAMNHVFHT 314

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           + Y       P            +          L    +G T     + AMR++   G+
Sbjct: 315 QGYDDYARAVPDWARKTLAEHADDPRPKLYSEEEL---AEGKTHDHYWNVAMREMRETGY 371

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPY 405
           MHN+LRM     +++                    LDG  A++     W     +     
Sbjct: 372 MHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLHDRPWQT 431

Query: 406 FRIFNPTIQG-----KRFDPQG 422
            +IF           ++FD +G
Sbjct: 432 RQIFGSVRYQSENSLRKFDAKG 453


>gi|160335014|gb|ABX24915.1| cryptochrome 1 [Capsella bursa-pastoris]
 gi|160335192|gb|ABX25004.1| cryptochrome 1 [Capsella bursa-pastoris]
          Length = 161

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/161 (35%), Positives = 90/161 (55%), Gaps = 1/161 (0%)

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
             +     +     +L  +  RE+ R++   +P     +P +   +   W  D +  +AW
Sbjct: 2   ANEGNEAGEESVNLFLKSIGLREYSRYISFNHP-YSHERPLLGHLKFFPWAVDENYFKAW 60

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           +QG TG+P++DA MR+L   GW+H+R+R++ +SF VK L + WR G +YF   LLD DL 
Sbjct: 61  RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           S+  GWQ+   T  DS  + RI NP  +G +FDP G ++R 
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRR 161


>gi|17230458|ref|NP_487006.1| hypothetical protein alr2966 [Nostoc sp. PCC 7120]
 gi|17132060|dbj|BAB74665.1| alr2966 [Nostoc sp. PCC 7120]
          Length = 278

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 9/208 (4%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
             G Q A   L+   K     Y + R+       ++LSPY+  GVLS  +  N + +   
Sbjct: 33  KGGRQAAQKALQ---KVNPATYAKTRNFLTGD-VTRLSPYIRYGVLSLGEIRNYVLDN-- 86

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
              +K    A   +NEL WR++++ L     +          T        S L    K+
Sbjct: 87  ---VKHPDDAKKLINELGWRDYWQRLYIKLGNGIWEDQEEYKTGYTPAEYASDLAADIKE 143

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG   ID+  R+L   G++HN +RM  A+++V    + W+ G ++F+  LLDGD ASN
Sbjct: 144 GKTGLVCIDSFSRELQETGYLHNHMRMWLAAYIVHWRRIRWQEGAKWFLEHLLDGDPASN 203

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           N  WQW AST +    +F   N     +
Sbjct: 204 NMSWQWVASTFSQKPYFFNRENLERYTQ 231


>gi|253995627|ref|YP_003047691.1| DNA photolyase FAD-binding [Methylotenera mobilis JLW8]
 gi|253982306|gb|ACT47164.1| DNA photolyase FAD-binding [Methylotenera mobilis JLW8]
          Length = 407

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 96/204 (47%), Gaps = 17/204 (8%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           +  G   AL  L          Y   R+       + LSPYL  G L+  + ++ +K++F
Sbjct: 36  WSGGRTGALRKLHA---VDAVQYGRNRNFING-AVTHLSPYLRHGCLNLNEVFSFVKQKF 91

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ-AW 326
                       S L EL WR+F+R +  +      G       E+ + N D   L  + 
Sbjct: 92  -------GLQGESLLMELAWRDFWRQVWFY-----EGNAIFSEMEQPKVNLDYQPLSVSV 139

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           KQ  TG P +D  +++L   G+MHN  RM  AS++V  L VDWR   ++F + LLDGD A
Sbjct: 140 KQANTGLPCMDGFIKELLDTGYMHNHARMWFASYVVHHLKVDWREAADWFEAHLLDGDFA 199

Query: 387 SNNGGWQWAASTGNDSVPYFRIFN 410
           SN+  WQW AST +    YF   N
Sbjct: 200 SNHLSWQWIASTFSSKPYYFNKEN 223


>gi|311232455|gb|ADP85309.1| DNA photolyase FAD-binding protein [Desulfovibrio vulgaris RCH1]
          Length = 478

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 133/452 (29%), Gaps = 46/452 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              L W+  + R  DN AL  A      + A +  V+  +P        + RQ HF+   
Sbjct: 21  GPVLYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPRFL---DAAYRQFHFLLRG 77

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +    ++L + GI F   Q     D  + +  +        +  +      +      + 
Sbjct: 78  MRGTAETLREHGIPFFLLQG----DPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVR 133

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------ 178
           + L         D   ++P     +      +   P    L+   +              
Sbjct: 134 EALAC--PLHEVDGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDPFPSLATEASGVA 191

Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYV 231
              A        P        +P     P          GE+ A   L  F   +++ Y 
Sbjct: 192 AWKAPVPDAMAAPDWDALLAAHPADRSVPALTGPDAPVPGEEGARRTLETFLTSRIHRYE 251

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           + R+ P     S LSPYL  G+++ ++   R+            S     +      + +
Sbjct: 252 K-RNDPNADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADARASFIEELVVRRELADNF 310

Query: 292 R------HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
                    +  +P+   G       +      D   L   ++  T  P+ +A   QL  
Sbjct: 311 CLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAAL---EKARTADPLWNAGQTQLMR 367

Query: 346 IGWMHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
            G +H  +RM  A  L+          RI         LDG  ++   G  W+    +D 
Sbjct: 368 CGVIHGYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGRDSNGYAGIAWSLGGVHDR 427

Query: 403 -------VPYFRIFNPTIQGKRFDPQGTFIRH 427
                      R         +FD    +I  
Sbjct: 428 PWGERPVQGTIRCMTYNGARGKFDV-AAYIAR 458


>gi|94971523|ref|YP_593571.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553573|gb|ABF43497.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Koribacter
           versatilis Ellin345]
          Length = 446

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 87/439 (19%), Positives = 152/439 (34%), Gaps = 36/439 (8%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
            W++   R  DN AL  A   ++A  +   I           + R   F+   +  + + 
Sbjct: 2   YWMQRAQRAFDNPALDVAVQAANALKLPCVIFFAPVPFYPHANLRHYAFLQQGIPDIAEM 61

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
             ++ I F   +          L  +C + +   L    +  + E+R  + +  + + RV
Sbjct: 62  AEERDIGFVLRRFPEHS-----LIKFCDEVKA-ALVIGDENPMRELREWREIAAK-KLRV 114

Query: 132 ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
              + D  V++P   +         +    +    + LV  +     V      G     
Sbjct: 115 PLWTVDADVIVPSKLLGKEQYAARIIRPRLKAHFKELLVPCENPRAHVKWHAARGLQQLD 174

Query: 192 NIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                       ID        F  G + AL +L +F K  +  Y E+ +     GT++L
Sbjct: 175 WRGTEDITEGWEIDRSVKPVDSFHGGTREALRLLDEFVKHGLTRYPERHNQADENGTARL 234

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMG 304
           SPYL  G + P      +++  V     P+     +L+++I WRE   +++ F P     
Sbjct: 235 SPYLHFGHIGPHTVALAVEKSKV-----PREAKDDFLDQVITWRELAINMVHFNPLYDTL 289

Query: 305 KPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +    W  K   E  KD     +  +  +   T   + +AA  Q+   GWMHN +RM  A
Sbjct: 290 ECGENWAHKTLGEHAKDPRPIQYTPKQLEAAETYDDLWNAAQLQMVHAGWMHNYMRMYWA 349

Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFRI 408
                  K   V +           LDG   +   G  WA     D            R 
Sbjct: 350 KKILEWSKSPQVAYNTAVYLNDKYFLDGRDPNGYAGIAWAIVGKFDRPWFPRPIFGTIRY 409

Query: 409 FNPTIQGKRFDPQGTFIRH 427
              +   K+FD +  +I  
Sbjct: 410 MARSGAEKKFDAE-KYIAQ 427


>gi|195474508|ref|XP_002089533.1| GE19152 [Drosophila yakuba]
 gi|194175634|gb|EDW89245.1| GE19152 [Drosophila yakuba]
          Length = 535

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 146/446 (32%), Gaps = 32/446 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61
           +++   + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+
Sbjct: 92  SSLGGVVYWMSRDGRVQDNWALLFAQRLAFKLELPLSVVFCLVPKFLNAT---IRHYKFM 148

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD- 120
              L +V++      I F          ++E L  +   + +  +     +    + R  
Sbjct: 149 MGGLQEVEQQCRALDIPFHLL----MGPAVEKLPEFVKSKDIGAVIC--DFAPLRLPRQW 202

Query: 121 -KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176
            + + K L   V     D   ++P     +      + +       L + L +     R 
Sbjct: 203 VENVSKALPKSVPMVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEFLSEFPPVVRH 262

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235
                 +    V             +  +  +   G + A   L +FC  ++ ++ ++R+
Sbjct: 263 PFGTGCKNVNAVDWLAAYASLQCDMEVEEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 322

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P     S LSP+L  G +S ++C   ++           S     +      + +    
Sbjct: 323 DPTADALSGLSPWLHFGHISAQRCALEVQRFRGQYKASADSFCEEAIVRRELADNFCFYN 382

Query: 296 AFYPSV--CMGKPFIPWTEKIEWNKDS-HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             Y S+       +       +  +D  + L+  ++  T   + ++A  QL   G MH  
Sbjct: 383 DQYDSLKGLSSWAYQTLDAHRKDKRDPCYRLEELEKSLTYDDLWNSAQLQLVREGKMHGF 442

Query: 353 LRMITASFLVKDLLVDWRIGEE---YFMSQLLDGDLASNNGGWQWAASTGNDS------- 402
           LRM  A  +++         E          LDG   +   G  W+    +D        
Sbjct: 443 LRMYWAKKILEWTATPEEALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWKERAI 502

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHW 428
               R  N     ++FD    F+  +
Sbjct: 503 FGKVRYMNYQGCKRKFDVNA-FVMRY 527


>gi|297849606|ref|XP_002892684.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338526|gb|EFH68943.1| hypothetical protein ARALYDRAFT_471385 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 496

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 83/455 (18%), Positives = 147/455 (32%), Gaps = 43/455 (9%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58
            +   +   + W+  D R+ DN AL  A    + ++A V  VF    +     G  ARQ 
Sbjct: 22  PSDQTVGPVVYWMFRDQRLNDNWALIHAVDLANRTNAPVAVVFNLFDQFL---GAKARQL 78

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L Q+   +    I F   Q     D+ E +  +  +   + L  +         
Sbjct: 79  GFMLKGLRQLHHQIDSLQIPFFLLQ----GDAKETIPKFIAECGASHLVTDFSPLREIRS 134

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSL 177
               + KR    +     D   ++P  +         +        L+   L++     L
Sbjct: 135 CKDEVVKRTSDSLAIHEVDAHNIVPMWAASGKLEYSARTIRGKINKLLPDYLIEFPKLEL 194

Query: 178 PVPAIRLTGPVTPSNIPRFFD----YPFQAIDPMFP-IGEQNALHIL----RKFCKEKVY 228
           P             +     D       +  +  +   GE   + +L      F  +++ 
Sbjct: 195 PKKKWTGMMDKKMVDWDSLIDKVVREGAEVPEIEWCVPGEDAGMEVLMGKKDGFLTKRLK 254

Query: 229 YYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI- 286
            Y   R+ P      S LSPYL  G +S ++C    +     +         ++L ELI 
Sbjct: 255 NYSADRNNPVKPKALSGLSPYLHFGQISAQRCALEAR----KVRNTSPQAVDTFLEELIV 310

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAM 340
            RE   +   + P     K    W  K   +  S        L+  ++G T  P+ + + 
Sbjct: 311 RRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGQTADPLWNGSQ 370

Query: 341 RQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            ++   G MH  +RM  A       K       I         +DG   S   G  W+  
Sbjct: 371 LEMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWSIC 430

Query: 398 TGNDS-------VPYFRIFNPTIQGKRFDPQGTFI 425
             +D            R  N     ++F+   ++I
Sbjct: 431 GVHDQGWKERPVFGKIRYMNYAGCKRKFNVD-SYI 464


>gi|153831247|ref|ZP_01983914.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39]
 gi|148873267|gb|EDL71402.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae 623-39]
          Length = 114

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/115 (57%), Positives = 80/115 (69%), Gaps = 2/115 (1%)

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL +DWR GE YFMS+L+DGD A+NNGGWQW ASTG D  PYFRIFNP  QG++FDP G 
Sbjct: 1   DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFDPNGD 60

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAK 478
           FIR W+PEL +V + YIH P ++   N +   YP  +VDHK+    TL  Y  AK
Sbjct: 61  FIRRWVPELRSVSSAYIHQPWTYPAVNSVL--YPARLVDHKQEREVTLRLYKTAK 113


>gi|120603889|ref|YP_968289.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris DP4]
 gi|120564118|gb|ABM29862.1| Deoxyribodipyrimidine photo-lyase type II [Desulfovibrio vulgaris
           DP4]
          Length = 473

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/452 (16%), Positives = 134/452 (29%), Gaps = 46/452 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              L W+  + R  DN AL  A      + A +  V+  +P        + RQ HF+   
Sbjct: 21  GPVLYWMHREHRAHDNWALLHAIGEAKAAGAPLAVVWCLSPRFL---DAAYRQFHFLLRG 77

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +    ++L + GI F   Q     D  + +  +        +  +      +      + 
Sbjct: 78  MRGTAETLREHGIPFFLLQG----DPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVH 133

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------ 178
           + L         D   ++P     +      +   P    L+   +              
Sbjct: 134 EALAC--PLHEVDGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDPFPSLATEASGVA 191

Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYV 231
              A        P        +P     P          GE+ A   L  F   +++ Y 
Sbjct: 192 AWKAPVPDAMAAPDWDALLAAHPADRSVPALTGPDAPVPGEEGARRTLETFLTSRIHRYE 251

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           + R+ P     S LSPYL  G+++ ++   R+            S     +      + +
Sbjct: 252 K-RNDPNADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADARASFIEELVVRRELADNF 310

Query: 292 R------HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
                    +  +P+   G       +      D   L   ++  T  P+ +AA  QL  
Sbjct: 311 CLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAAL---EKARTADPLWNAAQTQLMR 367

Query: 346 IGWMHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
            G +H  +RM  A  L+          RI         LDG  ++   G  W+    +D 
Sbjct: 368 CGVIHGYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGRDSNGYAGIAWSLGGVHDR 427

Query: 403 -------VPYFRIFNPTIQGKRFDPQGTFIRH 427
                      R         +FD    +I  
Sbjct: 428 PWGERPVQGTIRCMTYNGARGKFDV-AAYIAR 458


>gi|163851953|ref|YP_001639996.1| deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1]
 gi|163663558|gb|ABY30925.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium extorquens PA1]
          Length = 467

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 145/450 (32%), Gaps = 40/450 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---ARQS 58
           K        L  ++  +R+  N AL  A   ++   + + +        +G     AR  
Sbjct: 15  KPREGAGYVLYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLDGANGFPEANARHY 74

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L     +L ++GI F   + +  + +I+             L  +R Y   + R
Sbjct: 75  AFLLQGLADAAAALEKRGIAFLLRRATPAEVAIDL------SADAALLVLDRGYLAIQKR 128

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSL 177
               +E+  Q R++    +  V++P  +         +   P  RK     L   + R++
Sbjct: 129 WYGEIEREAQCRIV--QVEGDVVVPLETTSTKHEYAARTLRPKLRKLWDDYLDPVEPRTV 186

Query: 178 PVPA--------IRLTGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKV 227
             PA        +R    V+              + P+  F  G   A   L++F +   
Sbjct: 187 DHPAEGLIQRLKLRDGLDVSDPEKLLATLTLDTTVGPVKRFRGGYTEAAGHLKRFLEHAF 246

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL----- 282
             Y   R+ P     S +SPYL  G +SP +    ++           +     +     
Sbjct: 247 AGYGAGRNKPEAGAASHMSPYLHFGHISPVEIALAIRAAKDADDDDRSAYLEELIVRREL 306

Query: 283 --NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
             N +   + Y       P            +          L    +G T     + AM
Sbjct: 307 AMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLYSEEEL---AEGKTHDHYWNVAM 363

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAAS 397
           R++   G+MHN+LRM     +++                    LDG  A++     W   
Sbjct: 364 REMRETGYMHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDGRDANSFTNVAWIFG 423

Query: 398 TGNDSVPYFRIFNPTIQG-----KRFDPQG 422
             +      +IF           ++FD +G
Sbjct: 424 LHDRPWQTRQIFGSVRYQSENSLRKFDAKG 453


>gi|189424834|ref|YP_001952011.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ]
 gi|189421093|gb|ACD95491.1| deoxyribodipyrimidine photolyase [Geobacter lovleyi SZ]
          Length = 447

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 144/441 (32%), Gaps = 33/441 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              + W+  + R+ DN  LY A        A ++ VFI             RQ  F+   
Sbjct: 18  GPVVYWMSREQRVADNWGLYHAQQLALERQAALLVVFILADGFLGATL---RQYGFMLQG 74

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L QV + L    I F   +       ++    +  Q++   +     ++   ++R     
Sbjct: 75  LEQVARKLDGLNIPFLLLEGEPRHSMLQ----FIAQEQTGCVVC--DFDPLRIKRQWFDG 128

Query: 125 KRLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
                 V     D   ++P   + +      Y +    R+ L + LV          A +
Sbjct: 129 VAAAATVAVLEVDGHNIVPCRIASVKREFGAYTLRPKLRRVLPEFLVSIPQVVQHPFAWK 188

Query: 184 LTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
            T  +  +   +    P   +   P F  GEQ A   L  F  + +  Y  +R+ P + G
Sbjct: 189 KTVAIPDTEQVQIRLKPDAGVGVVPGFRPGEQAAFEALADFIAQGLNGYASRRNDPTVHG 248

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S LSP+L  G LSP++    +  +     ++          EL   + +    A Y   
Sbjct: 249 QSGLSPWLHFGHLSPQRIALAVATQGDSEDVEAMLEELIVRREL--SDNFCLYCASY-DT 305

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWK----QGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
               P        +   D       +    Q  T   + +AA  ++   G MH  LRM  
Sbjct: 306 LDAAPDWAHRTLEKHRHDPRRFCYTQHEFEQAATHDLLWNAAQTEMLETGKMHGYLRMYW 365

Query: 358 ASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFR 407
           A  +++                    LDG   +   G  W+    +D            R
Sbjct: 366 AKKILEWSESPEEAISTAIYLNDRYSLDGRDPNGYAGIAWSICGVHDRAWGERPVFGSIR 425

Query: 408 IFNPTIQGKRFDPQGTFIRHW 428
             +     ++F     +IRHW
Sbjct: 426 FMSYDGCKRKFKVD-EYIRHW 445


>gi|51859619|gb|AAU11091.1| class-II photolyase [Antonospora locustae]
          Length = 528

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 83/439 (18%), Positives = 153/439 (34%), Gaps = 31/439 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN AL  A   +    + +FI      R    + RQ  F+ A L +V+ 
Sbjct: 98  VYWMSRDQRVQDNWALLCAQGIAVRHGLPLFICFCLVPRFLDATTRQFRFMLAGLREVET 157

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK---LLEKRL 127
              Q GI F   + S    + E L  +    ++  +     +    V R+    L E+  
Sbjct: 158 EALQLGIAFHVLKGS----APEALPRFVEHHKIGCVVA--DFNPLRVVREWCSLLCERLR 211

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             RV     D   ++P   + +      +   P    + ++L        PV    ++GP
Sbjct: 212 GMRVSVVQVDAHNIVPAWVVSDKQEAGARTMRP---KIHRHLPAFLTEYPPVAVHPVSGP 268

Query: 188 VTPSNIPRFFDYPFQAID-----PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            +        +   +A            G + A  +L  FC E+++ Y + R+ PA  G 
Sbjct: 269 ASVRVDWAALEASVRADTGVGDCSWIRSGTRAAFEVLDVFCSERLHAYADVRNDPARDGL 328

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S +SPY   G ++ ++    +        +         +      + +      Y SV 
Sbjct: 329 SNMSPYFHFGQIAVQRAVLVVCSFRRTHGVSVDVFVEEAVVRRELADNFCLHNRNYDSVE 388

Query: 303 MGKPFIPWT---EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               +   T    + +  + ++ L+  +   T   + +AA  Q+   G MH  +RM  A 
Sbjct: 389 GASSWARGTLDAHRADRREHTYTLEQLEHAQTHDELWNAAQTQMTRDGKMHGFMRMYWAK 448

Query: 360 F---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIF 409
                        R          LDG   +   G  W+    +D            R  
Sbjct: 449 KILEWSVSPEEALRHAIYLNDRYELDGRDPNGYVGCMWSICGVHDRAWAERPVFGKVRYM 508

Query: 410 NPTIQGKRFDPQGTFIRHW 428
           + +   ++FD  G +IR +
Sbjct: 509 SYSGCLRKFDV-GCYIRRY 526


>gi|46578529|ref|YP_009337.1| deoxyribodipyrimidine photolyase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46447940|gb|AAS94596.1| deoxyribodipyrimidine photolyase, putative [Desulfovibrio vulgaris
           str. Hildenborough]
          Length = 474

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 133/452 (29%), Gaps = 46/452 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              L W+  + R  DN AL  A      + A +  V+  +P        + RQ HF+   
Sbjct: 17  GPVLYWMHREHRAHDNWALVHAIGEAKAAGAPLAVVWCLSPRFL---DAAYRQFHFLLRG 73

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +    ++L + GI F   Q     D  + +  +        +  +      +      + 
Sbjct: 74  MRGTAETLREHGIPFFLLQG----DPADEVPRFAATHGTGLVVTDFDVLRLKRAWLGQVR 129

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP------ 178
           + L         D   ++P     +      +   P    L+   +              
Sbjct: 130 EALAC--PLHEVDGRNVVPCRMASDKREYAARTLRPKIHRLLPEYLDPFPSLATEASGVA 187

Query: 179 -VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI------GEQNALHILRKFCKEKVYYYV 231
              A        P        +P     P          GE+ A   L  F   +++ Y 
Sbjct: 188 AWKAPVPDAMAAPDWDALLAAHPADRSVPALTGPDAPVPGEEGARRTLETFLTSRIHRYE 247

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
           + R+ P     S LSPYL  G+++ ++   R+            S     +      + +
Sbjct: 248 K-RNDPNADAVSGLSPYLHFGMMAAQRVVQRVTASTAGSADARASFIEELVVRRELADNF 306

Query: 292 R------HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
                    +  +P+   G       +      D   L   ++  T  P+ +A   QL  
Sbjct: 307 CLHTPDYDAVTCFPAWAQGTLDRHRDDPRPHLYDEAAL---EKARTADPLWNAGQTQLMR 363

Query: 346 IGWMHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
            G +H  +RM  A  L+          RI         LDG  ++   G  W+    +D 
Sbjct: 364 CGVIHGYMRMYWAKQLLLWTPTPEEAMRIAVRQNDRWALDGRDSNGYAGIAWSLGGVHDR 423

Query: 403 -------VPYFRIFNPTIQGKRFDPQGTFIRH 427
                      R         +FD    +I  
Sbjct: 424 PWGERPVQGTIRCMTYNGARGKFDV-AAYIAR 454


>gi|326925994|ref|XP_003209191.1| PREDICTED: deoxyribodipyrimidine photo-lyase-like [Meleagris
           gallopavo]
          Length = 503

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 134/430 (31%), Gaps = 26/430 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R+ DN A   A   +   +  +   F   P          R   F+   L +
Sbjct: 71  LYWMCRDQRVQDNWAFLYAQRLALKQELPLRVCFCLVPTFLDAT---IRHYGFMLRGLRE 127

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +  ++  I F            + L S+ ++  V  L  +        +  + +++RL
Sbjct: 128 VAEECAELDIPFHLL----LGCPKDVLPSFVVEHSVGGLVTDFCPLRVPRQWVEEVKERL 183

Query: 128 QHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLT 185
              V     D   ++P   +          +       L + L +       P P     
Sbjct: 184 PEDVPFAQVDAHNIVPCWVTSPKQEYSARTIRAKIHSKLPEFLTEFPPVIRHPHPPPNPP 243

Query: 186 GPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P+                +  +   G    L +L+ F  +++  +  QR+ P     S 
Sbjct: 244 EPIAWDACYSSLQVDHTVTEVAWATPGTAAGLAMLQSFITKRLKSFGSQRNDPNKAALSN 303

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           LSP+   G +S ++    +++          +     +      E + +    Y SV   
Sbjct: 304 LSPWFHFGQVSTQRAILEVQKHRCAYKESVDAFVEEAVVRRELAENFCYYNENYDSVRGA 363

Query: 305 KPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF- 360
             +   T K+         + L   +Q  T  P+ +AA  Q+   G MH  LRM  A   
Sbjct: 364 YDWAQSTLKLHAKDKRPFLYELPQLEQATTHDPLWNAAQLQMVQEGKMHGFLRMYWAKKI 423

Query: 361 --LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNP 411
               +      +          LDG   +   G  W+    +D            R  N 
Sbjct: 424 LEWTRSPEEALQFAIYLNDRYELDGMDPNGYVGCLWSICGIHDQGWKERDVFGKIRYMNY 483

Query: 412 TIQGKRFDPQ 421
               ++FD  
Sbjct: 484 AGCKRKFDVD 493


>gi|145345173|ref|XP_001417095.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577321|gb|ABO95388.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 506

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 143/419 (34%), Gaps = 39/419 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  + WL  D R+ DN AL  AC  + A    V IA     +  G  ARQ  F+   L +
Sbjct: 27  APVVYWLSRDQRVRDNWALLRACDVARANDAPVVIAFNLLTKFLGAGARQFGFMLRGLRE 86

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ +   K + F        D+    +D+   +     +  +     + ++  K L    
Sbjct: 87  LEGAAKAKNVTFAMTYG---DEPAIAIDALAKKIGAKTIVCDFSPLRDGLKWRKELAALC 143

Query: 128 QHR-VICKSFDDSVLLPPGSILNH--------ALQMYKVYTPFRKALIQNLVQADLRSLP 178
           + R   C+  D   ++P     +           ++ K Y  F     +        S P
Sbjct: 144 EARSAHCEECDAHNVVPCWEASDKLEVGARTLRGRLAKRYPEFLHEFPEVPDDLPKYSGP 203

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                    +    + R    P          GE  A  +L  F   ++  Y ++ D   
Sbjct: 204 ALDAVKWDDIIAEALSRGQAVPEVTWAI---PGETAAHAVLDDFVNSRMKLYEKRNDPSK 260

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAF 297
            Q  S LSP+L  G +S ++C    K+              S+  EL + RE   +   +
Sbjct: 261 PQALSGLSPWLHFGQISGQRCALEAKKAVGKASP---PAYESFFEELVVRRELSDNFCYY 317

Query: 298 YPSVCMGKPFIPWTEKIEWNKDS------------HLLQAWKQGYTGFPIIDAAMRQLNT 345
            P     +      +K +W KD+            + L+  ++  T   + +AA R+L  
Sbjct: 318 SPKYDQIEG-----QKYDWAKDTLRLHASDKRPYLYSLEELERAKTHDDLWNAAQRELRY 372

Query: 346 IGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
            G MH   RM  A       +      +       +  LDG   S   G  W+    +D
Sbjct: 373 GGKMHGFCRMYWAKKILEWTESPEQALKFAIYLNDTYSLDGRDPSGYVGCMWSIVGVHD 431


>gi|302780533|ref|XP_002972041.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii]
 gi|300160340|gb|EFJ26958.1| hypothetical protein SELMODRAFT_96351 [Selaginella moellendorffii]
          Length = 510

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 148/462 (32%), Gaps = 45/462 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61
           +     + W+  D R  DN AL  A   +   D  V  VF             AR   F+
Sbjct: 58  SHSGPVVYWMSRDQRSRDNWALLYAAEQARKRDTPVAVVFNLVESFLEAK---ARHFGFL 114

Query: 62  YASLLQVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
              L  V+K+L + GI   + +          +E  ++  L    + L       I    
Sbjct: 115 LRGLRVVEKNLEKLGIAFFLLRGRPEDTIPAFVEACNASILVLDFSPL------RIGRTW 168

Query: 119 RDKLLEKR-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           R  ++ +            D   ++P     +      +      +  +   +       
Sbjct: 169 RTGVVSRLGADTTTAVHEVDAHNVVPVWIASDKLEYAARTIRLKIQRQLPEFLVDFPTLE 228

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVE 232
           P             +     D   +A D          GE  AL  L  F   ++  Y  
Sbjct: 229 PFSKPWPGVAQEKIDWDSLIDEVLRAGDEVPEVDWCEPGEDIALERLAGFLSSRLQRYSA 288

Query: 233 QRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREF 290
           +R+ P+ ++  S LSPY   G LSP++C   ++               S+L EL I RE 
Sbjct: 289 ERNDPSKLERLSDLSPYFHYGQLSPQRCAFEVR----KARKLHMQSVDSFLEELIIRREL 344

Query: 291 YRHLMAFYPSVCMGKPFIPWTEK--IEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLN 344
             +   + P+    +    W     +E   D       +Q    G T   + +A+  ++ 
Sbjct: 345 SDNFCYYQPNYDNIQGAWEWARNSLLEHANDKREHIYTRQQLEDGKTKDKLWNASQLEMV 404

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGND 401
             G MH  +RM  A  +++             YF     LDG   +   G  W+    +D
Sbjct: 405 HRGKMHGFMRMYWAKKILEWTESPEDALAIAIYFNDKYQLDGRDPNGYVGCMWSICGIHD 464

Query: 402 S-------VPYFRIFNPTIQGKRFDPQGT--FIRHWLPELNN 434
                       R  N     ++F+  G   ++   + E+  
Sbjct: 465 QGWKERPIFGKIRYMNYEGCKRKFNVDGYIMYVNKLVAEVKK 506


>gi|240139079|ref|YP_002963554.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
           extorquens AM1]
 gi|240009051|gb|ACS40277.1| deoxyribodipyrimidine photolyase (DNA photolyase) [Methylobacterium
           extorquens AM1]
          Length = 467

 Score =  137 bits (344), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 145/451 (32%), Gaps = 42/451 (9%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGIS---ARQS 58
           K        L  ++  +R+  N AL  A   ++   + + +        +G     AR  
Sbjct: 15  KPREGAGYVLYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLDGANGFPEANARHY 74

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L     +L ++GI F   + +  + +I+             L  +R Y   + R
Sbjct: 75  SFLLQGLADAAAALEKRGIAFLLRRATPAEIAIDL------SADAALLVLDRGYLAIQKR 128

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSL 177
               +E+  Q R++    +  V++P  +         +   P  RK     L   + R +
Sbjct: 129 WYGEIEREAQCRIV--QVEGDVVVPLETASTKHEYAARTLRPKLRKLWDDYLEPVEPRQV 186

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-----------FPIGEQNALHILRKFCKEK 226
             PA  L   +   +     D P + +  +           F  G   A   L++F +  
Sbjct: 187 DHPAEGLIKRLKLKDGLDASD-PEKLLAKLALNTTVGPVKRFRGGYTEAAGHLKRFLEHA 245

Query: 227 VYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL---- 282
              Y   R+ P     S +SPYL  G +SP +    ++           +     +    
Sbjct: 246 FAGYGAGRNKPEAGAASHMSPYLHFGHISPVEIALAIRAAKDADDDDRSAYLEELIVRRE 305

Query: 283 ---NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
              N +   + Y       P            +          L    +G T     + A
Sbjct: 306 LAMNHVFHTQGYDDYARAVPDWARKTLAEHADDPRPKLYSEEEL---AEGKTHDHYWNVA 362

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAA 396
           MR++   G+MHN+LRM     +++                    LDG  A++     W  
Sbjct: 363 MREMRETGYMHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDGRDANSFTNVAWIF 422

Query: 397 STGNDSVPYFRIFNPTIQG-----KRFDPQG 422
              +      +IF           ++FD +G
Sbjct: 423 GLHDRPWQTRQIFGSVRYQSENSLRKFDAKG 453


>gi|288573172|ref|ZP_06391529.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288568913|gb|EFC90470.1| Deoxyribodipyrimidine photo-lyase [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 448

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 78/452 (17%), Positives = 146/452 (32%), Gaps = 44/452 (9%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58
           + +      + W+  D R+ DN AL  A      ++  +  VF  + +         R  
Sbjct: 18  EGSPGEGPVVYWMSRDQRVRDNWALLYAQDVALAANRPLEVVFCLSRDFIGAP---IRHY 74

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L +  K LS+  + F+        +  E L  Y  ++    L  +     ++  
Sbjct: 75  DFMLRGLTETAKELSKLNVSFKI----PLGEPKEKLPLYAKKRDPAVLVTDFSPLRHQKG 130

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             + + + L   +     D   ++P     +      +   P      Q  + A      
Sbjct: 131 WIESVYEYLSCPID--QVDGHNVVPAWETSDKREYAARTIRPKLHRKFQEFLTAFPEMKK 188

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
           +P         PS      D     ++   P G       LR F    +  Y   R+ P 
Sbjct: 189 LPYEDRETDRVPSTEELRLDGSVLPVEGEIP-GSAAGEMRLRSFIARGLSGYDRDRNDPN 247

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAF 297
           + GTS+LSPY+  G +S +           +  +    G+ +++ E ++ RE   +   +
Sbjct: 248 LDGTSRLSPYIHFGQISAQTVV-------REAFLADLPGSDAFVEEAMVRRELAENFCLY 300

Query: 298 YPSVCMGKPFIPW---------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
            P     +    W         ++K  W      L   ++  T   + +AA   L   G 
Sbjct: 301 EPLYDRYEALPEWGRKALDHHRSDKRPWLY---GLSELEEAGTHDELWNAAQLSLRRKGR 357

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDSV-- 403
           +H  LRM     L+                     LDG   +   G  W     +D    
Sbjct: 358 IHGYLRMYWGKMLLLWSPSPEEAFSRALYLNDRYALDGRDPNGYTGVAWCIGGLHDRPWP 417

Query: 404 -----PYFRIFNPTIQGKRFDPQGTFIRHWLP 430
                   R    +   ++FD +  +I  ++P
Sbjct: 418 KRPVFGSVRSMALSGCARKFDVK-RYIASFVP 448


>gi|282901135|ref|ZP_06309066.1| deoxyribodipyrimidine photolyase-like protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193967|gb|EFA68933.1| deoxyribodipyrimidine photolyase-like protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 264

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 9/208 (4%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           P G + A+  L    K     Y + R+       ++LSPY+  GVLS R+       E++
Sbjct: 33  PGGRKAAVEQLE---KVNAVLYAKTRNYL-TGAVTRLSPYIRHGVLSLREV-----REYI 83

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
              ++        +NEL WR++++ L                T     +    L +  ++
Sbjct: 84  LNTVENSEDGSKLINELGWRDYWQRLYMKLGKGIWENQEEYKTGYHRGDYSHTLPEDIRE 143

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG   ID+  ++L   G++HN +RM  AS+++    + W+ G ++F+  LLDGD ASN
Sbjct: 144 GKTGMVCIDSFSQELRVTGYLHNHIRMWLASYIIHWRKIQWQAGAKWFLQHLLDGDPASN 203

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           N  WQW AST +    +F   N     K
Sbjct: 204 NMSWQWVASTFSHKPYFFNRENLERYTK 231


>gi|213158207|ref|YP_002320258.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057]
 gi|213057367|gb|ACJ42269.1| deoxyribodipyrimidine photo-lyase [Acinetobacter baumannii AB0057]
          Length = 193

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 4/182 (2%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+W R DLRI D+ AL+ A     +  + + I +PEQW+QH  +  +  F    L  +Q
Sbjct: 6   QLIWFRQDLRIHDHAALWHASQQGPS--LGLVILSPEQWKQHADAPIKISFYLRQLRTLQ 63

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
           K LS   I         + +   ++  +  +  +  ++ N +  +NE++RDK ++  L +
Sbjct: 64  KELSALHIPLVIQVIPYWKEIATFISDFSKKYNIENVYANIEIGVNELKRDKTVQDYLNR 123

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL-RSLPVPAIRLTGP 187
           H      F D  + P  SI N + Q Y+V++ F+KA    L  + L +  PVP  +   P
Sbjct: 124 HGKELFLFHDRTIFPLRSIRNQSQQPYQVFSAFKKACYTKLDTSGLSQCYPVPNKQNEVP 183

Query: 188 VT 189
           + 
Sbjct: 184 LD 185


>gi|328953264|ref|YP_004370598.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM
           11109]
 gi|328453588|gb|AEB09417.1| deoxyribodipyrimidine photolyase [Desulfobacca acetoxidans DSM
           11109]
          Length = 463

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 146/431 (33%), Gaps = 37/431 (8%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
                + WL  D R  DN AL  A H   +  A +  VF   P   +      RQ  F+ 
Sbjct: 18  GGGPVVCWLSRDQRADDNWALLYAQHLALSRQAALAVVFNLVPHFLQATY---RQYDFML 74

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L ++ ++L QK I F   Q     +    +  +  Q R   +     ++   ++R   
Sbjct: 75  KGLEELTQNLGQKNIPFFLLQG----EPAATIPMFLAQSRAGAVVS--DFDPLRIKRQWK 128

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            +   +  +     D   ++P                P    L+ + +  + RS+ +   
Sbjct: 129 DQVLPRLSIPFYEVDAHNIIPCWLASAKQEFGAYTLRPRIHRLLSDFL-TEPRSIEIHPF 187

Query: 183 RLTGPVTPSNIPR-----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           R    V   +          D     +    P GE      L  F +  +  Y   R+ P
Sbjct: 188 RWPDSVPQIDWRSVLASAAMDRSVPPVSWCQP-GESAGRARLTSFIQLGLPRYHLSRNDP 246

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA 296
             +G S LSPYL  G ++ ++    ++       + P     ++L ELI  RE   +   
Sbjct: 247 IREGQSDLSPYLHFGQIAAQRVAWEVQRA-----VAPTEARQAFLEELIVRRELADNFCW 301

Query: 297 FYPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
             P       F  W +      + +     + L+ ++   T  P+ +AA  ++   G MH
Sbjct: 302 HNPDYDRFSGFPAWAQETLNKHRTDRRDYLYSLREFESARTHDPLWNAAQLEMLHRGKMH 361

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
             LRM  A  +++         E          LDG   +   G  W+    +D     R
Sbjct: 362 GYLRMYWAKKILEWTASPEEALEIALYLNNRYELDGRDPNGYAGVAWSIGGLHDRPWGER 421

Query: 408 IFNPTIQGKRF 418
              P     RF
Sbjct: 422 ---PVFGKIRF 429


>gi|224124936|ref|XP_002329850.1| predicted protein [Populus trichocarpa]
 gi|222871087|gb|EEF08218.1| predicted protein [Populus trichocarpa]
          Length = 503

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 163/471 (34%), Gaps = 48/471 (10%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +        + W+  D R+ DN AL  A   ++   + V +A     +  G  ARQ  F+
Sbjct: 27  RGQVGGGPVVYWMFRDQRLQDNWALIHAVDQANRSNVPVAVAFNLFDQFLGAKARQLGFM 86

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR-- 119
              L Q+Q  + +     Q        ++ E + ++      + L     +      R  
Sbjct: 87  LRGLCQLQSHIEE---TLQIPFFLFLGEAEETIPAFLKDCGASLLVT--DFSPLRQFRTC 141

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              + KR+   V     D   ++P   + +  L+        +   +      D   L +
Sbjct: 142 QDEICKRVSDSVTIHEVDAHNVVPIW-VASEKLEYSARTLRGKINKLLPEYLIDFPMLQL 200

Query: 180 PAIRLTGPVTPS-NIPRFFD----YPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYY 229
           P  +       S +     D       +  +  +   GE  A+ +L      F  +++  
Sbjct: 201 PKNKWVAATKQSIDWNDLIDNVLRKGAEVPEIKWCEPGEDAAMEVLMGSKDGFLTQRLKN 260

Query: 230 YVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-W 287
           Y   R+ P    G S LSPYL  G +S ++C    +     +       A ++L ELI  
Sbjct: 261 YSTDRNNPLKPKGLSGLSPYLHFGQISAQRCALEAR----KVRNLSPQSADAFLEELIVR 316

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMR 341
           RE   +   + P+         W  K   +  S   +        ++  T  P+ +A+  
Sbjct: 317 RELADNFCFYQPNYDSIHGAWEWARKTLADHASDKREHIYSKEQLEKAQTADPLWNASQL 376

Query: 342 QLNTIGWMHNRLRM--ITASFLVKDLLVDWRIGEEYFM-------SQLLDGDLASNNGGW 392
           ++   G MH  +R   + + +  K +L   R  EE             +DG       G 
Sbjct: 377 EMVCHGKMHGFMRQKTLCSMYWAKKILEWTRGPEEALAISIYLNDKYEIDGRDPGGYVGC 436

Query: 393 QWAASTGNDS----VPYF---RIFNPTIQGKRFDPQG--TFIRHWLPELNN 434
            W+    +D      P F   R  N     ++F+  G  T+++  + ++  
Sbjct: 437 MWSICGIHDQGWKERPIFGKIRYMNYAGCKRKFNVDGYITYVKRIVGDMKK 487


>gi|688103|gb|AAB32328.1| photorepair gene [Drosophila melanogaster]
          Length = 536

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 76/450 (16%), Positives = 147/450 (32%), Gaps = 39/450 (8%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61
           +++   + W+  D R+ DN AL  A   +   +  +  VF   P+         R   F+
Sbjct: 92  SSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVVFCLVPKFLNAT---IRHYKFM 148

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L +V++      I F     S    ++E L  +   + +  +     +    + R  
Sbjct: 149 MGGLQEVEQQCRALDIPFHLLMGS----AVEKLPQFVKSKDIGAVVC--DFAPLRLPRQW 202

Query: 122 L--LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADL--RS 176
           +  + K L   V     D   ++P     +      + +       L + L +     R 
Sbjct: 203 VEDVGKALPKSVPLVQVDAHNVVPLWVASDKQEYAARTIRNKINSKLGEYLSEFPPVVRH 262

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235
                 +    V  S          +  +  +   G + A   L +FC  ++ ++ ++R+
Sbjct: 263 PHGTGCKNVNTVDWSAAYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRN 322

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL 294
            P     S LSP+L  G +S ++C   ++        + K+ A ++  E ++ RE   + 
Sbjct: 323 DPTADALSGLSPWLHFGHISAQRCALEVQRF---RGGQHKASADAFCEETIVRRELADNF 379

Query: 295 MAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAW----KQGYTGFPIIDAAMRQLNTIGW 348
             +       K    W  +      KD           ++  T   + ++A  QL   G 
Sbjct: 380 CFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQLQLVREGK 439

Query: 349 MHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS--- 402
           MH  LRM                            LDG   +   G  W+    +D    
Sbjct: 440 MHGFLRMYWPQKILEWTATPEQALEYAILLNDKYSLDGRDPNGYVGCMWSIGGVHDMGWK 499

Query: 403 ----VPYFRIFNPTIQGKRFDPQGTFIRHW 428
                   R  N     ++FD    F+  +
Sbjct: 500 ERAIFGKVRYMNYQGCRRKFDVNA-FVMRY 528


>gi|328784628|ref|XP_003250474.1| PREDICTED: deoxyribodipyrimidine photo-lyase [Apis mellifera]
          Length = 480

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 152/438 (34%), Gaps = 29/438 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  D+RI DN AL  A   +    + + I           S R   F+   L +++K
Sbjct: 43  LYWMFRDIRIQDNWALLFAQKAALKNNVPLHICFCLISNFLNASIRYYKFLLKGLEEIEK 102

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              +  I F         + ++++  Y +   +T  +     ++  +  D  ++K L   
Sbjct: 103 ECKKLNINFHLLHGEPNINILKFIKIYNMGAIITDFY---PLKLPMLWIDN-VKKNLPKD 158

Query: 131 VICKSFDDSVLLPPGSILNHALQMYK-VYTPFRKALIQNLVQADLR-SLPVPAIRLTGPV 188
           +     D   ++P     +      K +       L + L +       P          
Sbjct: 159 IPICQVDAHNIVPCWYASSKQEFAAKTIRNKINTKLEEFLTEFPPVIKHPYTTKEKFEKN 218

Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                 +  +      +  +   G +N +  L  F + ++  Y ++R+ P     S LSP
Sbjct: 219 NWKIALQNVEVDKSVKEITWAKPGYENGIKELENFLQNRLKKYGDERNNPLSNAISNLSP 278

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKP 306
           +   G++S ++C   +KE +  L    K    S++ E +I +E   +   +     + + 
Sbjct: 279 WFHFGMISVQRCILEIKE-YKKLY---KKSVESFMEEAIIRKELSDNFCFYNEKYDLIEG 334

Query: 307 FIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             PW        + +  K  + L   +   T   + +A   Q+ TIG MH  LRM  A  
Sbjct: 335 AYPWAIETLNKHRKDKRKYIYFLNHLENSETHDDLWNACQNQMVTIGKMHGFLRMYWAKK 394

Query: 361 ---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFN 410
                +   +  +          +DG   +   G  W+    +D            R  N
Sbjct: 395 ILEWTETPEIALKWANYLNNKYSIDGCDPNGYVGCMWSICGVHDHGWPERDIFGKIRYMN 454

Query: 411 PTIQGKRFDPQGTFIRHW 428
                ++F+    F+  W
Sbjct: 455 YEGCKRKFN-IAEFVMKW 471


>gi|188996663|ref|YP_001930914.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931730|gb|ACD66360.1| Deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 455

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 83/455 (18%), Positives = 163/455 (35%), Gaps = 40/455 (8%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
             +    + W+ +  R   N  L  A   S+     + +  P   +    +AR   F+  
Sbjct: 18  NQSGKYTIYWMSHSHRANFNHGLEYAIKLSNDYKKPLLVYFPITDKYKYSNARYYKFMLD 77

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            +L+ +KS+ ++GI F   +    +  +  +           L  ++ Y     +    +
Sbjct: 78  GVLEAKKSIEERGIKFIIEKSDGIEQRVIEISK-----NAVALITDKAYLKYYRKLYSDI 132

Query: 124 EKRLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            K+L   +     +  V +P   +     +  + +       L   +++ + R   + ++
Sbjct: 133 TKQLD--IPFYEVESDVCVPVEIASQKQEVYAFNIRKKIYDLLDSYILKLEPREPKIKSV 190

Query: 183 RLTGPVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            L   +    +    +               F  G   A   L++F ++K++ Y E R  
Sbjct: 191 NLDFGIKELTLNSSLEILDILNIDKSVSLSPFIGGYSQAKRCLKEFIEKKLHKYKEYRSH 250

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLM 295
           P +   S LSPYL  G +SP +    +  E+     K      S+ NELI WRE  R+  
Sbjct: 251 PELDYQSNLSPYLHFGQISPIEVALEILSEY-----KKDENVDSFFNELIAWRELARNFC 305

Query: 296 AFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            + PS    +    W +K   +   D     + L+ ++   T     +AA  +L   G M
Sbjct: 306 YYNPSYNHYEGIPDWAKKTLEDHKNDKRDYVYTLEEFENAKTHDEYWNAAQLELLKSGKM 365

Query: 350 HNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV--- 403
           HN +RM          +D    + I         LDG   +   G  W   T +      
Sbjct: 366 HNFMRMYWCKKIIEWTQDPKHAFDIACYLNDKYELDGRDPNGYAGISWCFGTHDRPWKER 425

Query: 404 ---PYFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
                 R  + +    +FD     I+ ++ ++ ++
Sbjct: 426 KIFGKVRYMSASGLEAKFD-----IKKYVEKVKSL 455


>gi|295113008|emb|CBL31645.1| Deoxyribodipyrimidine photolyase [Enterococcus sp. 7L76]
          Length = 256

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 11/245 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL  ++
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASLK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           + P     + +   +     + +GE+ A   L  F  +K+  Y  +RD P    TS LS 
Sbjct: 176 LFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFIDQKLQSYENKRDFPYQDQTSHLST 235

Query: 248 YLSIG 252
           +   G
Sbjct: 236 FFKNG 240


>gi|302781626|ref|XP_002972587.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii]
 gi|300160054|gb|EFJ26673.1| hypothetical protein SELMODRAFT_97206 [Selaginella moellendorffii]
          Length = 510

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 148/462 (32%), Gaps = 45/462 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFI 61
           +     + W+  D R  DN AL  A   +   D  V  VF             AR   F+
Sbjct: 58  SHSGPVVYWMSRDQRSRDNWALLYAAEQARKRDTPVAVVFNLVESFLEAK---ARHFGFL 114

Query: 62  YASLLQVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
              L  V+K+L + GI   + +          +E  ++  L    + L       I    
Sbjct: 115 LRGLRVVEKNLDKLGIAFFLLRGRPEDTIPSFVEACNASILVLDFSSL------RIGRTW 168

Query: 119 RDKLLEKR-LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           R  ++ +            D   ++P     +      +      +  +   +       
Sbjct: 169 RTGVVSRLGADTTTAVHEVDAHNVVPVWIASDKLEYAARTIRLKIQRQLPEFLVDFPTLE 228

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDP-----MFPIGEQNALHILRKFCKEKVYYYVE 232
           P             +     D   +A D          GE  AL  L  F   ++  Y  
Sbjct: 229 PFSKPWPGVAQEKIDWDSLIDEVLRAGDEVPEVDWCEPGEDIALERLAVFLSSRLQRYSA 288

Query: 233 QRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREF 290
           +R+ P+ ++  S LSPY   G LSP++C   ++               S+L EL I RE 
Sbjct: 289 ERNDPSKLERLSDLSPYFHYGQLSPQRCAFEVR----KARKLHMQSVDSFLEELIIRREL 344

Query: 291 YRHLMAFYPSVCMGKPFIPWTEK--IEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLN 344
             +   + P+    +    W     +E   D       +Q    G T   + +A+  ++ 
Sbjct: 345 SDNFCYYQPNYDNIQGAWEWARNSLLEHANDKREHIYTRQQLEDGKTKDKLWNASQLEMV 404

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGND 401
             G MH  +RM  A  +++             YF     LDG   +   G  W+    +D
Sbjct: 405 HRGKMHGFMRMYWAKKILEWTESPEDALAIAIYFNDKYQLDGRDPNGYVGCMWSICGIHD 464

Query: 402 S-------VPYFRIFNPTIQGKRFDPQGT--FIRHWLPELNN 434
                       R  N     ++F+  G   ++   + E+  
Sbjct: 465 QGWKERPIFGKIRYMNYEGCKRKFNVDGYIMYVNKLVAEVKK 506


>gi|304315052|ref|YP_003850199.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis
           str. Marburg]
 gi|313104153|sp|P58818|PHR_METTM RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|302588511|gb|ADL58886.1| deoxyribodipyrimidine photo-lyase [Methanothermobacter marburgensis
           str. Marburg]
          Length = 444

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 161/445 (36%), Gaps = 44/445 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W++  +R   N AL  A   +++    +I +F  T E       ++R   F+   L  
Sbjct: 23  IYWMQASVRAHWNHALEYAIETANSLHKPLIVIFGLTDEF---PNANSRHYRFLIEGLRD 79

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKR 126
           V  +L ++G           +     +  Y  +   + +  +R Y +I +   D+L E  
Sbjct: 80  VGDALMKRGARLVVEN----ERPPSAVMRYSDE--ASAVVVDRGYLDIQKEWVDELAESL 133

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAIRLT 185
               V     + +V++P  +           + P   + L + +V    R L V ++ L 
Sbjct: 134 ---HVPLMQVESNVIVPVETASPKEEYSAGTFRPKITRELERFMVPLKERRLAVDSLDLD 190

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
                +++   F    +    +F  G   A+ +  +F  EK+  + + R+ P     S +
Sbjct: 191 PGPDLNDVTGKFRASEELEPSIFSGGASEAIRLFDEFLSEKLACFEKYRNDPVKNCLSNM 250

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMG 304
           SPYL  G +SP          ++ +          +L ELI  RE   + + +  +    
Sbjct: 251 SPYLHFGHISP---------LYLAMKASKTGECPEFLEELIVRRELSMNFVHYSDNYSSI 301

Query: 305 KPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           +    W +K       +  +  + L+ +++  T  P  +AA +++   G MH  +RM   
Sbjct: 302 RCLPEWAQKTLMEHARDPKEYEYTLREFEEARTHDPYWNAAQKEMVITGKMHGYMRMYWG 361

Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV------PYFRIF 409
                        + I         +DG   +   G  W     + +          R  
Sbjct: 362 KKILEWTDHPERAYDIAIYLNDKYEIDGRDPNGFTGVAWCFGKHDRAWAEREIFGKVRYM 421

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNN 434
           N     ++F   G ++R  + EL  
Sbjct: 422 NDRGLERKFR-IGEYVRR-VQELEE 444


>gi|1617219|emb|CAA67683.1| CPD photolyase [Arabidopsis thaliana]
 gi|2984707|gb|AAC08008.1| type II CPD photolyase PHR1 [Arabidopsis thaliana]
          Length = 496

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/456 (18%), Positives = 153/456 (33%), Gaps = 45/456 (9%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58
            +   +   + W+  D R+ DN AL  A    + ++A V  VF    +        ARQ 
Sbjct: 22  PSDQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFL---DAKARQL 78

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L Q+   +    I F   Q     D+ E + ++  +   + L  +    + E+R
Sbjct: 79  GFMLKGLRQLHHQIDSLQIPFFLLQ----GDAKETIPNFLTECGASHLVTD-FSPLREIR 133

Query: 119 RDK-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRS 176
           R K  + KR    +     D   ++P  +  +      +        L+   L++     
Sbjct: 134 RCKDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLE 193

Query: 177 LPVPAIRLTGPVTPSNIPRFFD----YPFQAIDPMFP-IGEQNALHIL----RKFCKEKV 227
            P             +     D       +  +  +   GE   + +L      F  +++
Sbjct: 194 PPKKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRL 253

Query: 228 YYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             Y   R+ P      S LSPYL  G +S ++C    +     +          +L ELI
Sbjct: 254 KNYSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEAR----KVRSTSPQAVDIFLEELI 309

Query: 287 -WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAA 339
             RE   +   + P     K    W  K   +  S        L+  ++G T  P+ +A+
Sbjct: 310 VRRELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLWNAS 369

Query: 340 MRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
             ++   G MH  +RM  A       K       I         +DG   S   G  W+ 
Sbjct: 370 QLEMLYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWSI 429

Query: 397 STGNDS-------VPYFRIFNPTIQGKRFDPQGTFI 425
              +D            R  N     ++F+   ++I
Sbjct: 430 CGVHDQGWKERPVFGKIRYMNYAGCKRKFNVD-SYI 464


>gi|321460192|gb|EFX71237.1| DNA photolyase 2 [Daphnia pulex]
          Length = 523

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 139/425 (32%), Gaps = 20/425 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  + R+ DN AL  A   +    + + I         G + RQ  F+   L +V+ 
Sbjct: 82  LYWMSREQRVQDNWALLYAQRLALKMKLPLHICFCLVPTFLGATIRQFGFMLKGLEEVET 141

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              +  I F   +  +     + +    L      +  +       +     +++ +   
Sbjct: 142 ECQKLKIEFHLLKGESQICVPDLITKLKL----DAVVADFSPLRVPLSWIDKVKESIPKN 197

Query: 131 VICKSFDDSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLTGPV 188
           V     D   ++P     +        +       L + L +       P PA      V
Sbjct: 198 VPFCQIDAHNIVPVWVASDKQEVGARTIRKKINDKLDEFLTEFPPVIVHPHPAKTKAKSV 257

Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
                  + +      +  +   G ++ L  L  FC+ ++  Y E+R+ P +   S LSP
Sbjct: 258 DWKAADAYLEVDRTVGEVDWITPGTKSGLQELFNFCQRRLKMYAEKRNDPNLAALSNLSP 317

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-CMGKP 306
           +L  G +S ++C   +K           +     +      + +      Y ++      
Sbjct: 318 WLHFGQISAQRCILEVKGYKTKHAKSVDAYMEETIIRRELSDNFCFYNTNYDNLKGAANW 377

Query: 307 FIPWTEKIEWNKDSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---L 361
                E  + +K   LL  Q  ++G T   + +A+  QL   G MH  LRM  A      
Sbjct: 378 AQETLEVHKKDKRPALLSAQQLEEGKTHDDLWNASQIQLTRTGKMHGFLRMYWAKKILEW 437

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQ 414
            +      RI         LDG   S   G  W+    +D            R  N    
Sbjct: 438 TETPEEALRIAIYLNDRYSLDGRDPSGYVGCMWSICGIHDMGWKQRDVFGKIRYMNYKGC 497

Query: 415 GKRFD 419
            ++FD
Sbjct: 498 QRKFD 502


>gi|291286943|ref|YP_003503759.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884103|gb|ADD67803.1| deoxyribodipyrimidine photolyase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 446

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 146/426 (34%), Gaps = 36/426 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              + W+  D R+ DN AL  A     +  + +  VF   P+         +   F+   
Sbjct: 19  GPVIYWMNRDQRVRDNWALIKAMELAESRQSPMAVVFCLIPDYPSARN---QHFRFMMEG 75

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++   L    I F         + ++ L  +  Q     +      + + ++ ++ ++
Sbjct: 76  LCEIDLELEYLKIPFFMISG----NPVDELSKFIRQVGAGAVV----TDFSPLKFNRKMK 127

Query: 125 KRLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
             L     V     D   ++P     +      +   P    L+   +  +   L     
Sbjct: 128 LELAEVINVPLIEVDAHNIVPCRIASHKEEFAARTIRPKINGLLSQFL-VEFPKLKQQRY 186

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +  G     +  R  +  F   +  +P G + A   L  F    +  Y  +R+ P I   
Sbjct: 187 KWKGHTAHIDWERVIN-SFGIPNNFYPAGIRAADEALHNFVTGSLNGYNIKRNDPTIDHQ 245

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSV 301
           S LSPYL  G +S ++C     E F            ++  EL + RE   +   +    
Sbjct: 246 SNLSPYLHFGNISAQRCALDAGEAFW-----ADEDIRAFKEELVVRRELAENYCFYNDHY 300

Query: 302 CMGKPFIPWTEK-IEWNKDS-----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              +    W +K IE ++D      +    ++Q  T  P+ +AA +++   G MH  +RM
Sbjct: 301 DSVEGAHSWAKKTIEEHRDDSREYIYGYDEFEQAKTHDPLWNAAQKEMAIKGKMHGYMRM 360

Query: 356 ITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPT 412
             A        D+   +           LDG   +   G  W+    +D   + R   P 
Sbjct: 361 YWAKKMLEWTPDVETAFETALSLNDRYSLDGRDPNGYTGVAWSVCGVHDRAWFER---PV 417

Query: 413 IQGKRF 418
               R+
Sbjct: 418 FGKIRY 423


>gi|62859891|ref|NP_001017311.1| cryptochrome 1 (photolyase-like) [Xenopus (Silurana) tropicalis]
          Length = 241

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 83/244 (34%), Gaps = 24/244 (9%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  +  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIQGADT-IRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       + ++TKL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWKITKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI-- 182
                 +      S  L     L+  +++     P      Q L+ + +   +PV  I  
Sbjct: 116 LASEAGVEVIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITA 172

Query: 183 ----RLTGPVTPSNIPR-----FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYY 230
               + T PV   +  +       +  F        ++P GE  AL  L +  + K +  
Sbjct: 173 EVMEKCTTPVLDDHDEKYGVPSLEELGFDTEGLPSAVWPGGETEALTRLERHLERKAWVA 232

Query: 231 VEQR 234
             +R
Sbjct: 233 NFER 236


>gi|300934396|ref|ZP_07149652.1| deoxyribodipyrimidine photolyase [Corynebacterium resistens DSM
           45100]
          Length = 265

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 96/265 (36%), Gaps = 30/265 (11%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-PEQWRQHGISARQSH 59
           M   +     LVW R+DLR+ DN AL  A   S   V+ VFI   PE      + A  + 
Sbjct: 1   MADNSGAGPTLVWFRDDLRLRDNPALTWAA--SRGPVVGVFILESPEATHARPLGAAAAW 58

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F + ++  +   L+   +              E + S   Q     + ++R+Y    +  
Sbjct: 59  FQHKAIRGLHDELAAHNVPLLLAAGDPR----EVIPSLAAQL-AGAVTWSRRYHQPFIDL 113

Query: 120 DKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D  ++  L ++    KS    +L  P  I       Y+ +TPF + +          + P
Sbjct: 114 DAHVKTALANQGTEAKSHSGYLLSEPWMIRTGQGTPYRKFTPFARNVEDFATGDIAENPP 173

Query: 179 VP-AIRLTGPVTPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFC------ 223
           +     L GP         ++    A +P         +  GE  AL+ L++F       
Sbjct: 174 LDIPAGLHGPRDLELDYPEWELSSLAAEPAWTKKLQSHWEAGESGALNTLQQFVATLSGE 233

Query: 224 ------KEKVYYYVEQRDIPAIQGT 242
                  E    Y + RD PA+  T
Sbjct: 234 NLPASSAEVRLGYSDGRDYPAVTRT 258


>gi|30682738|ref|NP_849651.1| PHR1 (PHOTOLYASE 1); DNA photolyase [Arabidopsis thaliana]
 gi|75201504|sp|Q9SB00|PHR_ARATH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName:
           Full=AtCPDII; AltName: Full=DNA photolyase; AltName:
           Full=Photoreactivating enzyme 1; AltName: Full=Protein
           UV RESISTANCE 2
 gi|4239819|dbj|BAA74701.1| PHR1 [Arabidopsis thaliana]
 gi|332190750|gb|AEE28871.1| photolyase 1 [Arabidopsis thaliana]
          Length = 496

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/454 (18%), Positives = 153/454 (33%), Gaps = 45/454 (9%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
              +   + W+  D R+ DN AL  A    + ++A V  VF    +        ARQ  F
Sbjct: 24  DQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFL---DAKARQLGF 80

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L Q+   +    I F   Q     D+ E + ++  +   + L  +    + E+RR 
Sbjct: 81  MLKGLRQLHHQIDSLQIPFFLLQ----GDAKETIPNFLTECGASHLVTD-FSPLREIRRC 135

Query: 121 K-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLP 178
           K  + KR    +     D   ++P  +  +      +        L+   L++      P
Sbjct: 136 KDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLEPP 195

Query: 179 VPAIRLTGPVTPSNIPRFFD----YPFQAIDPMFP-IGEQNALHIL----RKFCKEKVYY 229
                        +     D       +  +  +   GE   + +L      F  +++  
Sbjct: 196 KKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKN 255

Query: 230 YVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-W 287
           Y   R+ P      S LSPYL  G +S ++C    +     +         ++L ELI  
Sbjct: 256 YSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEAR----KVRSTSPQAVDTFLEELIVR 311

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMR 341
           RE   +   + P     K    W  K   +  S        L+  ++G T  P+ +A+  
Sbjct: 312 RELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLWNASQL 371

Query: 342 QLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           ++   G MH  +RM  A       K       I         +DG   S   G  W+   
Sbjct: 372 EMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWSICG 431

Query: 399 GNDS-------VPYFRIFNPTIQGKRFDPQGTFI 425
            +D            R  N     ++F+   ++I
Sbjct: 432 VHDQGWKERPVFGKIRYMNYAGCKRKFNVD-SYI 464


>gi|237756180|ref|ZP_04584748.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691667|gb|EEP60707.1| deoxyribodipyrimidine photo-lyase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 455

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 164/451 (36%), Gaps = 46/451 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+ +  R   N  L  A   S+     ++  F+ T +       +AR   F+   +L+
Sbjct: 25  IYWMSHSHRANFNHGLEYAIKLSNDYKKPLLVYFLITDKY---KYSNARYYKFMLDGVLE 81

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            +KS+ ++GI F   +  +    I       + +    L  ++ Y     +    + K+L
Sbjct: 82  AKKSIEERGIKFIIEKSDDIKQRI-----IEISRSAVALITDKAYLKYYRKLYSDIAKQL 136

Query: 128 QHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              +     +  V +P   +     +  + +       L   L++   R   + ++ L  
Sbjct: 137 D--IPFYEVESDVCIPVEIASQKQEVYAFNLRKKIYALLDSYLLKLAPREPKIKSVNLDF 194

Query: 187 PVTPSNIPRFFDY------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
            +    +    +               F  G   A   L++F ++K++ Y E R  P + 
Sbjct: 195 GIKELTLNSSLEILDILNIDKSVSLSPFIGGYNQAKRCLKEFIEKKLHKYKEYRSHPELD 254

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP 299
             S LSPYL  G +SP +    +  E+     K      S+ NELI WRE  R+   + P
Sbjct: 255 YQSNLSPYLHFGQISPIEVVLEILSEY-----KKDENVDSFFNELIVWRELARNFCYYNP 309

Query: 300 SVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +    +    W +K   +   D     + L+ ++   T     +AA  +L   G MHN +
Sbjct: 310 NYNHYEGIPDWAKKTLEDHKNDKRDYVYTLEEFENAKTHDEYWNAAQLELLKSGKMHNYM 369

Query: 354 RMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV------P 404
           RM          +D    + I         LDG   +   G  W   T +          
Sbjct: 370 RMYWCKKIIEWTQDPKHAFDIACYLNDKYELDGRDPNGYAGISWCFGTHDRPWKERKIFG 429

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWLPELNNV 435
             R  + +    +FD     I+ ++ ++ ++
Sbjct: 430 KIRYMSASGLEAKFD-----IKKYVEKVKSL 455


>gi|282896459|ref|ZP_06304479.1| deoxyribodipyrimidine photolyase-like protein [Raphidiopsis brookii
           D9]
 gi|281198565|gb|EFA73446.1| deoxyribodipyrimidine photolyase-like protein [Raphidiopsis brookii
           D9]
          Length = 262

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 9/211 (4%)

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
              P G + A   L    K     Y + R+       ++LSPY+  GVLS R+       
Sbjct: 30  SGIPGGRKAAEAQLE---KVNTVSYAKTRNYL-TGAVTRLSPYIRHGVLSLREV-----R 80

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
           E++   ++        +NEL WR++++ L                T     +   +L + 
Sbjct: 81  EYILNTVENSEDGSKLINELGWRDYWQRLYMKLGKGIWENQEEYKTGYHTEDYSHNLPED 140

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
            ++  TG   ID+  ++L   G++HN +RM  AS+++    + W+ G ++F+  LLDGD 
Sbjct: 141 IQESKTGLVCIDSFSQELRVTGYLHNHIRMWLASYIIHWRKIQWQAGAKWFLQHLLDGDP 200

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           ASNN  WQW AST +    +F   N     K
Sbjct: 201 ASNNMSWQWVASTFSHKPYFFNRENLERYTK 231


>gi|189499730|ref|YP_001959200.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1]
 gi|189495171|gb|ACE03719.1| deoxyribodipyrimidine photolyase [Chlorobium phaeobacteroides BS1]
          Length = 451

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 87/449 (19%), Positives = 149/449 (33%), Gaps = 50/449 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              + W+  D R  +N AL  A      ++  +I  F   P          R   F+   
Sbjct: 18  GPVVYWMSRDQRAENNWALLFAEQLSMQNNQPLIVAFNLVPSYPEATL---RHYDFMLKG 74

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLL 123
           L+QV++ L    I F         +    +  +    R   +  +    +I+E  ++K+L
Sbjct: 75  LMQVEQQLEALNIPFLVLSG----NPEREIPRFTASCRAGAVVTDFSPLKISETWKNKVL 130

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           E      +     D   ++P  +  N      +   P    L++  +      L   +  
Sbjct: 131 EHI---PIPFYEVDAHNIVPCRTASNKLEFSARTIRPKINRLLETFL-TGFPELKGQSPE 186

Query: 184 LTGPVTPSNIPRFFDY--------PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
               V P    + ++         P   IDP    G   A   L+KF   ++  Y + R+
Sbjct: 187 RKSAVPPVEWNKLYETLRINRAVAPVTWIDP----GGDAATKTLKKFIDHRLASYPKLRN 242

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHL 294
            P     S LSPYL  G +S +     ++         P+S    +L EL I RE   + 
Sbjct: 243 DPNAHAVSDLSPYLHFGQISAQHVAREIQ-----ASDAPRSAKDVFLEELVIRRELADNY 297

Query: 295 MAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAW----KQGYTGFPIIDAAMRQLNTIGW 348
             +       K   PW  +       D+          ++  T  P+ +AA ++L   G 
Sbjct: 298 CLYNKHYDSLKGIHPWAAETLERHRTDTREFLYTADDLEKASTHDPLWNAAQKELCNTGK 357

Query: 349 MHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-- 403
           MH  LRM  A        D    +           LDG   +   G  W+    +D    
Sbjct: 358 MHGYLRMYWAKKILEWTPDPDTAFETALLLNDKYSLDGRDPNGFTGIAWSIGGVHDRAWF 417

Query: 404 -----PYFRIFNPTIQGKRFDPQGTFIRH 427
                   R  N     ++F+    +I+ 
Sbjct: 418 ERPVFGKIRYMNYNGCVRKFNVD-NYIKT 445


>gi|318042774|ref|ZP_07974730.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0101]
          Length = 340

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 14/228 (6%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
             +     F  G   A  +L +    +   Y + R+       ++LSPY+  G LS  + 
Sbjct: 70  GAEGSLSPFRGGRHQAEQLLSRI---QPARYAKGRNFLDGP-VTRLSPYIRQGALSLAEV 125

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
            + +        ++ ++     +NEL WR++++ L                T        
Sbjct: 126 RDAVF-----AKLRSRTDGEKLINELGWRDYWQRLWHQLGHGIWRDQEELKTGHHPGAYS 180

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
             L     +G TG   +D  + +L++ GW+HN  RM  A++LV    + W+ G ++F+  
Sbjct: 181 PELPGDIAEGRTGLACMDGFITELHSTGWLHNHARMWLAAYLVHWRRIRWQAGAQWFLRH 240

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           LLDGD ASNN  WQW AS+ +    +F   N           G++ R 
Sbjct: 241 LLDGDPASNNLSWQWVASSFSHKPYFFNRSNLERYS-----HGSYCRR 283


>gi|9634828|ref|NP_039121.1| Photolyase [Fowlpox virus]
 gi|7271656|gb|AAF44502.1|AF198100_149 ORF FPV158 Photolyase [Fowlpox virus]
 gi|8926140|gb|AAF81696.1|AF246697_1 CPD-photolyase [Fowlpox virus]
          Length = 464

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/436 (17%), Positives = 142/436 (32%), Gaps = 24/436 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V L W+  D R+ DN AL  A   +    I + I      + H  ++R   F+ + L +
Sbjct: 37  KVVLYWMFRDQRVQDNWALIYAQRLALKLKIPLRICFCVVPKFHTTTSRHFMFLISGLKE 96

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +   +  I F              +  Y +   +T  F  R  E    R  K     L
Sbjct: 97  VAEECKRLCIGFSLIYGVPKVIIPCIVKKYRVGVIITDFFPLRVPE----RLMKQTVISL 152

Query: 128 QHRVICKSFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
              +     D   ++P     +        +       L + + +  +            
Sbjct: 153 PDNIPFIQVDAHNIVPCWEASDKEEYGARTLRKKIFDKLYEYMTEFPVVRKHPYGPFSIS 212

Query: 187 PVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
              P NI          +   +   G +  + +L++F K ++  Y    + P     S L
Sbjct: 213 IAKPKNI----SLDKTVLPVKWATPGTKAGIIVLKEFIKNRLPSYDADHNNPTCDALSNL 268

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SP+L  G +S ++    + +   +     ++     +      + + +    Y S+    
Sbjct: 269 SPWLHFGHVSAQRVALEVLKCIRESKKNVETFIDEIIVRRELSDNFCYYNKHYDSIQSTH 328

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
            +   T +   N     + + KQ     T  P+ +A+  Q+   G MH+ LRM  A  ++
Sbjct: 329 SWARKTLEDHINDPRKYIYSIKQLEKAETHDPLWNASQMQMVREGKMHSFLRMYWAKKIL 388

Query: 363 KDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNPT 412
           +                    LDG   +   G  W+    +D            R  N  
Sbjct: 389 EWTRTPEDALSYSIYLNNKYELDGTDPNGYVGCMWSICGLHDRAWKERPIFGKIRYMNYE 448

Query: 413 IQGKRFDPQGTFIRHW 428
              K+FD    FI+ +
Sbjct: 449 SSKKKFDV-AVFIQKY 463


>gi|289740223|gb|ADD18859.1| photolyase [Glossina morsitans morsitans]
          Length = 510

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 144/444 (32%), Gaps = 35/444 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              + W+  D R+ DN A   A   +   +  +   F   P+       + R   F+   
Sbjct: 71  GPVVYWMYRDQRVQDNWAFLYAQRLALKLELPLCVCFCLLPKYI---HTTLRHYKFMLTG 127

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +V +      + F   +       +E+L           +  +       ++  + ++
Sbjct: 128 LEEVSEECEDLNVSFHLLKGPAHQSLVEFLKDV----DAATVVCDFSPLRLPLQWLEEIK 183

Query: 125 KRLQHRVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           + L   +     D   ++P   +          +       L + L +           R
Sbjct: 184 EVLPTTIPFIQIDAHNVVPVWFASQKQEYAARTIRNKINSQLEEYLTEFPPLIRHKYPNR 243

Query: 184 LTGPV--TPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                    S                   G +NA H L +FC+ ++  + ++R+ P I  
Sbjct: 244 KPSTKVNWKSVYNTLKCLKTVDEVASVKPGYKNACHQLLEFCQNRLKLFHDKRNDPNIDA 303

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPS 300
            S LSP+ + G +S ++C   +K        K K    ++  E ++ RE   +   +  +
Sbjct: 304 LSGLSPWFNFGQISIQRCILEIKTY----EHKFKDSVAAFCEEAIVRRELADNFCFYNQN 359

Query: 301 VCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               +    W+ K   E  KD     + L+ ++Q  T   + ++A  QL   G MH  LR
Sbjct: 360 YDNFQGLQDWSRKTLNEHRKDERSPCYSLEEFEQARTHDDLWNSAQLQLMREGKMHGFLR 419

Query: 355 MITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VP 404
           M  A       K                 LDG   +   G  W+    +D          
Sbjct: 420 MYWAKKILEWSKSPEDALEFSLLLNDRYSLDGTDPNGYVGCMWSIGGIHDQGWAERKIFG 479

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428
             R  N     ++FD    F+  +
Sbjct: 480 KIRYMNYQGCKRKFDVTA-FVARY 502


>gi|119510319|ref|ZP_01629455.1| hypothetical protein N9414_16217 [Nodularia spumigena CCY9414]
 gi|119465063|gb|EAW45964.1| hypothetical protein N9414_16217 [Nodularia spumigena CCY9414]
          Length = 280

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 14/218 (6%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            G + A   L+   K     Y + R+       ++LSPY+  GVLS R+  + + E+  D
Sbjct: 34  GGRKAAEKALQ---KVNPVDYAKTRNSL-TGAVTRLSPYIRYGVLSLREVRDDVLEKVQD 89

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                 + A   +NEL WR++++ L                T     +    L      G
Sbjct: 90  -----PNDASKLINELGWRDYWQRLYVKLGDRIWEDQEEYKTGYSPKDYADQLPADITAG 144

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG   ID+  ++L + G++HN +RM  A+++V    + W+ G ++F+  LLDGD ASNN
Sbjct: 145 TTGMVCIDSFSQELRSTGYLHNHMRMWLAAYIVHWRRIRWQAGAKWFLEHLLDGDPASNN 204

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
             WQW AST +    +F   N     K     G + R 
Sbjct: 205 MSWQWVASTFSHKPYFFNRENLERYTK-----GVYCRQ 237


>gi|219128726|ref|XP_002184557.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404007|gb|EEC43956.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 524

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 19/213 (8%)

Query: 219 LRKFCKEKVYYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
           L +F +       ++     +   +S+LS +L++G++SPR            +  +   G
Sbjct: 321 LTRFVQNGHAATAKRSLADVSDNNSSRLSTFLALGIISPRTV--------HAITAEGGEG 372

Query: 278 AFSWLNELIWREFYRHLMAFYPSVC---MGKPFIPWTEKIEW-----NKDSHLLQAWKQG 329
           A    + L  R+F+ +L     S      G P     + I W      +     + W QG
Sbjct: 373 ARWLCSHLTMRDFFIYLCFASGSRLYQQEGLPVNAKRKNIPWYSPAAPQKYDCWRRWAQG 432

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
           +TG P+IDA MR+L   G+  NR+R   AS L +DL +DWR G E     L D  +A+N 
Sbjct: 433 FTGLPLIDAGMRELCQTGYCSNRVRQNIASVLCRDLQIDWRAGAEVLQFLLRDHCVAANW 492

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           G W + +  G D  P  R F    Q  R+DP+ 
Sbjct: 493 GNWLYFSGVGPD--PKSRHFRSVSQALRYDPEA 523



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 29/185 (15%)

Query: 1   MKATTAM--SVHLVWLRNDLRITDNKALYA--------ACHNSDAKVIAVFIATPEQWRQ 50
           M ++ +   S+ L W R DLR+ DN  LY            N    +I++++     +  
Sbjct: 1   MSSSFSKGRSLRLAWHRRDLRLADNP-LYHPNANDCNKLTVNDSQNIISLYVFDQGDFSL 59

Query: 51  HG------------ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98
                              + ++  +++ +++SL   G               + +    
Sbjct: 60  TPSVTGDPNWTVARTGPHAARYLRRAVVDLRRSLRSIGGELLVRIGDPRLIVPQVVKELR 119

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRL---QHRVICKSFDDSVLLPPGSILNHALQMY 155
               VT++ +N    + E      +   L   Q  V   +   + L  P  +        
Sbjct: 120 ---DVTEVTWNEDPGVYERNTSDNVRNELFFQQPLVRITTVASTPLYHPDDLPRSKYDWD 176

Query: 156 KVYTP 160
           ++  P
Sbjct: 177 RLAHP 181


>gi|51246428|ref|YP_066312.1| DNA photolyase [Desulfotalea psychrophila LSv54]
 gi|50877465|emb|CAG37305.1| probable DNA photolyase [Desulfotalea psychrophila LSv54]
          Length = 458

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 141/436 (32%), Gaps = 36/436 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              + W+  D R+ DN AL  A   +      ++ VF   P+          Q  F+   
Sbjct: 25  GPVVYWVSRDQRVRDNWALLWAQQEAISRQKGLLVVFCLVPDYLGAKSS---QYLFMLRG 81

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++QK L +  I F   + S  D    +L        V+       ++   ++R    +
Sbjct: 82  LARMQKKLHEMNIHFTLFEQSPDDILPGFLRQIDAHLLVS------DFDPLRIKRQWTEQ 135

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAI 182
              Q        D   ++P   + +          P  K L+ + +     L+  P    
Sbjct: 136 LIAQVVTPIYQVDTHNIIPAWMVSDKKEYAAYTIRPKIKRLLDDFLTDIPPLQHHPFSWA 195

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                   S++ R       +   +   GE +A      F K  +  Y E+R+ P + G 
Sbjct: 196 HTLALAGSSSLARVISTLNSSGCELRGAGEASAQFAADSFIKIGLENYSERRNNPCLNGQ 255

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSV 301
           S LSPYL  G LS ++    +  + + +  K       +L ELI  RE   +   + P  
Sbjct: 256 SGLSPYLHFGHLSAQRLAWVVSRDKLPIETK-----EPFLEELIVRRELSDNFCLYEPLY 310

Query: 302 CMGKPFIPWTEKI--EWNKDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                F  W  K   +   D           + G T   + +A    L   G +H  LRM
Sbjct: 311 DTFAGFPAWARKSLDQHRCDERAYLYSFHDLEAGNTHEQLWNACQIDLVQSGKLHGYLRM 370

Query: 356 ITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PY 405
             A        +                LDG   +   G  W+    +D           
Sbjct: 371 YWAKKILEWTPNPETALEYAIRLNDRYSLDGRDPNGYAGVAWSIGGVHDRAWAERPVFGK 430

Query: 406 FRIFNPTIQGKRFDPQ 421
            R  N     ++FD  
Sbjct: 431 IRYMNEAGCRRKFDVN 446


>gi|255264745|ref|ZP_05344087.1| deoxyribodipyrimidine photo-lyase family protein [Thalassiobium sp.
           R2A62]
 gi|255107080|gb|EET49754.1| deoxyribodipyrimidine photo-lyase family protein [Thalassiobium sp.
           R2A62]
          Length = 378

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/245 (27%), Positives = 96/245 (39%), Gaps = 14/245 (5%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDI--PAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           FP     AL  L  F       Y   R+   P   G S LSPY+   +L+  +    ++E
Sbjct: 5   FPPTRAAALTRLHAFAPGAGRAYARDRNFDRPDAAGVSALSPYIRHRMLTEPEVLASVRE 64

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG---KPFIPWTEKIEWNKDSHL 322
              D        A  ++ E+ WR +++  +   PSV      +    W +    +     
Sbjct: 65  NHSDA------DAEKFIQEVFWRTYWKGWLELRPSVWDDYVVERDQAWNDVQTQSGLRTA 118

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
            +    G TG    D   + L   G++HN  RM  AS  +  L + W +G ++F+  LLD
Sbjct: 119 WEDACLGRTGIECFDHWAQDLAATGYLHNHSRMWFASIWIFTLRLPWSLGADFFLRHLLD 178

Query: 383 GDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQ-GKRFDPQGTFIRHWLPELNNVPTQYI 440
           GD ASN   W+W A        Y  R  N T   G RF P+     H  P     P    
Sbjct: 179 GDAASNTLSWRWVAGLQTIGKTYLARPDNITKYTGGRFRPK-ELATHAFPVDGTPPRARG 237

Query: 441 HAPHS 445
            AP S
Sbjct: 238 PAPTS 242


>gi|85858841|ref|YP_461043.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB]
 gi|85721932|gb|ABC76875.1| deoxyribodipyrimidine photolyase [Syntrophus aciditrophicus SB]
          Length = 460

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 85/455 (18%), Positives = 155/455 (34%), Gaps = 45/455 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R T N AL  A   ++A    V +           + R   F+   L   ++
Sbjct: 22  LYWMQASQRETCNHALEYAIRKANALCQPVVVFFGIVDDFPEANERHYFFMLEGLCDAKR 81

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L ++GI      CS        L    + +  + +  +R Y    +R  K         
Sbjct: 82  TLEKRGIQLVIQHCSP------ELGVVMMSRDASLVVVDRGY----LRIQKAWRNVAAAS 131

Query: 131 VICK--SFDDSVLLPPGSILNHA-LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + C     +  V++P     +        +     + L Q L+  +       ++ L   
Sbjct: 132 MDCPLIQVESDVVVPIEETSSKEEYSAATIRKKIHQKLNQYLISLEETKPMADSLSLDFE 191

Query: 188 VTPSNIPRFFDYPFQAIDPM-----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
             P +              +     F  G +     L  F  +K+ +Y E R+ P +   
Sbjct: 192 SFPIDDVERAILRLDIDRSVKCVSFFRGGFEEGRKHLDVFIDQKLEHYAEHRNDPTLDCL 251

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSV 301
           S +SPYL  G +SP     R+       L   ++ + ++L ELI  RE   + + +    
Sbjct: 252 SLMSPYLHFGQISPLYIALRI-------LNSGRTSSEAYLEELIVRRELGINFVFYNTHY 304

Query: 302 CMGKPFIPWTEK--IEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              +    W +K      KD       ++    G T  P  +AA +++   G MH  +RM
Sbjct: 305 DTFECLPGWAKKSLRTHEKDQRPYHYSRKELEDGKTHDPYWNAAQKEMVLKGKMHGYMRM 364

Query: 356 ITASFLVKDLLVDWR--IGEEYFMS-QLLDGDLASNNGGWQWAASTGNDSVPYFRIF--- 409
                +++             Y  +   LDG   +   G  W     +       IF   
Sbjct: 365 YWGKKIIEWCETPEEAFHTAIYLNNKYELDGREPNGFMGVAWCFGKHDRPWRERNIFGNV 424

Query: 410 ---NPTIQGKRFDPQGTFIR---HWLPELNNVPTQ 438
              N     ++FD  G +++    W  +   +P Q
Sbjct: 425 RYMNDRGLKRKFDADG-YVKLSAQWEDQGALIPNQ 458


>gi|114769242|ref|ZP_01446868.1| DNA photolyase-like protein [alpha proteobacterium HTCC2255]
 gi|114550159|gb|EAU53040.1| DNA photolyase-like protein [alpha proteobacterium HTCC2255]
          Length = 418

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 94/251 (37%), Gaps = 15/251 (5%)

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPR 257
              +  F    +  L  L++F       Y  +R+           S LSP++        
Sbjct: 13  DKFNEAFIPTREAGLKRLKEFAPLAGEIYSNKRNFDFSSIEKNSVSALSPWIKH------ 66

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
           +     +     L    +  A  ++ E+ WR +++  +  +P+V          E  +  
Sbjct: 67  RLITEEEVIIEILKYHNQHSAMKFIQEVFWRGYFKGWLEQHPTVWSHHNDKLIKEYAKLE 126

Query: 318 KDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
            +        +   G TG    D    QL + G++HN +RM  AS  V  L +   +G +
Sbjct: 127 NNRFVKESYMSAVNGETGIECFDFWCEQLKSTGYLHNHVRMWFASIWVFTLKLPMELGAD 186

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPY-FRIFNPT-IQGKRFDPQGTFIRHWLPEL 432
           +FM  L+D D ASN   W+W +        Y  R  N       +F+P G  + +  P +
Sbjct: 187 FFMLHLIDADAASNTLSWRWVSGLHTKGKAYAARASNIEKFTNGQFNPSGQLVENIEPLI 246

Query: 433 NNVPTQYIHAP 443
            N+    +  P
Sbjct: 247 ENIDHPLVSLP 257


>gi|78186406|ref|YP_374449.1| DNA photolyase, class 2 [Chlorobium luteolum DSM 273]
 gi|78166308|gb|ABB23406.1| Deoxyribodipyrimidine photo-lyase type II [Chlorobium luteolum DSM
           273]
          Length = 495

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 87/492 (17%), Positives = 158/492 (32%), Gaps = 80/492 (16%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58
            A       + W+  D R+  N+AL+ A        A +I  F  +P          RQ 
Sbjct: 12  SAPGISGPVIYWMSRDQRVEQNRALHYARFRAVADGAPLIVAFTLSPSFIGATF---RQY 68

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L++V++ L +  I F   +    +  + + +S      VT       Y    + 
Sbjct: 69  DFMLRGLMEVERRLRELEIGFVLLEGDPAEAIVRFRESIGSGCVVT------DYSPLRIS 122

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           R           V+    D   ++P            + + P    + + L +  +   P
Sbjct: 123 RRWKATAAAALPVLFIEVDAHNIVPCLMASPKQEYSARTFRP---KVNRLLGEFLIALPP 179

Query: 179 VPAIRLTGPVTPSNIPRF-FDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           V  +  + P  P++  R     P +           GE  A+  L  F +E++ +Y E+R
Sbjct: 180 VERVPASEPWAPTDWERVRARLPVERPAGTVRHPQPGEAAAIRHLETFIRERLAWYGERR 239

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLK------------------------------ 264
           + P    TS LSPYL  G +        ++                              
Sbjct: 240 NDPNADATSGLSPYLHFGHIWAGTVAIAVRGVMNVVNSPSPEGWEAIGVVNSTSPEGREA 299

Query: 265 -------------EEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPW 310
                           V     P+    ++L ELI  RE   +  A+            W
Sbjct: 300 SGVVNSTSPEGWEATGVVNSPSPEESKAAFLEELIVRRELSDNYCAYNSRYDSFDGLPIW 359

Query: 311 TEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            +       + L       + +++  T  P+ +AA ++L   G +H  +RM  A  +++ 
Sbjct: 360 AQDSLARHAADLREAIYTPEEFEKAVTHDPLWNAAQQELLRTGSIHGYMRMYWAKKILEW 419

Query: 365 LLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQ 414
                       +      LDG   +   G  W+    +D            R  N    
Sbjct: 420 SPSPREAFETAVWLNDRYALDGRDPNGYAGVAWSIGGLHDRPWFERPVYGKIRYMNAAGC 479

Query: 415 GKRFDPQGTFIR 426
            ++FD +  +IR
Sbjct: 480 RRKFDVE-RYIR 490


>gi|157278339|ref|NP_001098271.1| photolyase [Oryzias latipes]
 gi|1401038|dbj|BAA05043.1| photolyase [Oryzias latipes]
          Length = 504

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 142/445 (31%), Gaps = 43/445 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVF-IATPEQWRQHGISARQSHFIYASLLQVQ 69
           L W+  D R+ DN AL  A   +  + + +         +    + R   F+   L +VQ
Sbjct: 73  LYWMLRDQRVQDNWALIRAQQLAAKESLPLHVCFCLVVPKSELSTLRHYSFLLKGLEEVQ 132

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K      I F     +  D     L  +        +  +       ++  + ++K L  
Sbjct: 133 KECKHLNIQFHLLHGAAGD----VLPGFVTGHNFGAVVTDFSPLREPLQWLEAVKKGLPE 188

Query: 130 RVICKSFDDSVLLPPG-SILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGP 187
            +     D   ++P   +          +       L + L    L    P  A +    
Sbjct: 189 DIPFIQVDAHNIVPCWVASPKLEYSARTIRGKITNLLSEFLTDFPLVDKHPFSATKTAKA 248

Query: 188 VTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           V                +P     G +  L +L  F   ++  +  QR+ P     SQLS
Sbjct: 249 VDWDKTLASLKVDRTVGEPKLAKPGTEAGLAMLESFIDVRLKLFGTQRNDPNAAALSQLS 308

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G LS ++   ++++              +++ EL+ R        FY      K 
Sbjct: 309 PWLRFGQLSAQRVALQVRK-------NSSPSVPAFIEELVVRRELTDNFCFY-----NKN 356

Query: 307 FIPWTEKIEW------------NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
           +   T   EW             +  +  + +++  T   + +AA  Q+ T G MH  LR
Sbjct: 357 YDSVTGAYEWAQKTLKDHAKDKREYLYTREQFEKAQTHDKLWNAAQIQMVTEGKMHGFLR 416

Query: 355 MITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDS-------VP 404
           M  A  +++                    LDG   +   G  W+    +D          
Sbjct: 417 MYWAKKILEWSTSPEEALSIALYLNDRYELDGQDPNGFVGCMWSICGIHDQGWAERAVFG 476

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHWL 429
             R  N     ++F+    F R + 
Sbjct: 477 KIRFMNYKGCLRKFNV-AQFERKYC 500


>gi|325115796|emb|CBZ51351.1| hypothetical protein NCLIV_044160 [Neospora caninum Liverpool]
          Length = 636

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 165/457 (36%), Gaps = 43/457 (9%)

Query: 8   SVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
            V + +L+ DLR+ +N AL     A    +  ++ + +  P    Q   + R   F    
Sbjct: 82  KVVICYLQRDLRVQENWALLLAQEAARALNKPLVVIHLLVPGLAFQP--TRRHLSFFIGG 139

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ-----YEINEVRR 119
             +V+  L    I F+        D    LD      ++ ++F   Q      + N +R 
Sbjct: 140 AREVEAELKSLNIGFEL-PIVAKKDPKGRLDEANK--KIEEVFAALQPALAVCDFNPLRL 196

Query: 120 DKLLEKRL-----QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
              + + L     +        D   ++P     N A    +   P  +A+++       
Sbjct: 197 PTQIVEALARVYGKGLSPLYQVDTHAVVPCWVASNKAETSARTMRPKLQAMLKEFAVPFP 256

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCK-EKVYY 229
           +  P P    +  + P +  R        P + +D  +  G + AL +L+ F   + +  
Sbjct: 257 KVEPHPVPWTSKQLFPLDEDRVLSAVKPDPPEPLDS-WKPGTKAALRLLQSFATPQNIAK 315

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNELI-W 287
           Y + R+ P     S LSPY+  G ++ ++C   + +       +    G  ++++E++  
Sbjct: 316 YGKARNDPLADCQSDLSPYIHFGHIAVQRCLMEVSKLKDTTGDRAVHEGVRAFIDEVVVR 375

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMR 341
            +   + + F P     K    W ++       +  +  +   A ++G T   + +AA  
Sbjct: 376 SQLSDNFVFFNPHYDDIKGAPDWAKQTLEKHAKDKREPQYEFTALEEGKTYDSLWNAAQL 435

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAAST 398
           QL   G MH  LRM  A  L++                    LDG   +   G  W+   
Sbjct: 436 QLVRDGKMHGYLRMYWAKKLLEWTKSPQEALKTAIALNDKYHLDGTDPNGVTGCMWSIGG 495

Query: 399 GNDS-------VPYFRIFNPTIQGKRFDPQGTFIRHW 428
            +D            R  N     ++FD +  F+R +
Sbjct: 496 VHDQGFKERPVFGKIRYMNYPGCERKFDVKA-FVRKF 531


>gi|320102273|ref|YP_004177864.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
 gi|319749555|gb|ADV61315.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
          Length = 486

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 153/457 (33%), Gaps = 47/457 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64
           S  L W++   R   N AL  A    ++    V AVF  TP          R   F+   
Sbjct: 27  SCVLYWMQRAQRAKANPALNLAIALGNSLKLPVWAVFGLTPSYPEAQ---RRHYRFLIEG 83

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-EVRRDKLL 123
           L+  Q   +Q G+             ++ ++          +    +  +         +
Sbjct: 84  LVDTQADAAQLGVPLVVRLGDPPAVVLKAVEESRP-----AVVVGDENPVRIGQCWRAKV 138

Query: 124 EKRLQHRVICKSFDD--------SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
            + L  R     F          S L P        ++  K++    + L    V     
Sbjct: 139 AESLSQRARPIPFPVVDADVVVPSSLFPKEEYAARTIRP-KIHRMLHEWLKPLPVIKAKT 197

Query: 176 SLPVPAIRLTGP-----VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
             P       GP     +T  ++            P +P G + A   L++F  +++  Y
Sbjct: 198 PWPTDESGQGGPPQGEPITVEHLMGQIRVGGVGEVPNYPGGTREAERRLQRFVAQRLARY 257

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP--KSGAFSWLNELI-W 287
            + R+ P    TS+LS +L  G +SP      +++E  +  +    K+   S+L E+I  
Sbjct: 258 GKDRNEPIPYMTSELSAHLHFGHISPLTIALAVQKEAEEAGVAAETKASVESYLEEMIVR 317

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAAMR 341
           RE   + +A  P          W      +   D     +     ++  T  P+ +AA +
Sbjct: 318 RELAINFVARNPKYDSLAGCPDWARATLAKHANDPRPKLYTATQLERAETHDPLWNAAQK 377

Query: 342 QLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           ++   G MHN LRM  A        D    + +  +      +DG   +   G  WA   
Sbjct: 378 EMTLTGRMHNYLRMYWAKKILEWSPDPETAFAVALDLNDRYEMDGRDPNGYTGVAWAIGG 437

Query: 399 GNDSV-------PYFRIFNPTIQGKRFDPQG--TFIR 426
            +D            R  +     ++FD +    ++R
Sbjct: 438 KHDRPWGERPIFGTVRYMSYDSTRRKFDSERYIAYVR 474


>gi|297623532|ref|YP_003704966.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
           17093]
 gi|297164712|gb|ADI14423.1| DNA photolyase FAD-binding protein [Truepera radiovictrix DSM
           17093]
          Length = 489

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 155/443 (34%), Gaps = 36/443 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++     + +A          +AR   F+   L  V +
Sbjct: 58  LYWMQQSQRARFNHALEHAAMWANDLNKPLLVAFGLMDDYPEANARHYAFLLEGLQDVAE 117

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+++ I F   +    +       +  L Q    L  +R Y  ++    + + +  + R
Sbjct: 118 ALAERRIAFVVQRGRPDEV------ALRLAQDAALLVCDRGYLRHQRLWRERVAREARCR 171

Query: 131 VICKSFDDSVLLPPGSILNH------ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           V+    D  V +   S            ++ +    + + + +  ++A  R L V  + L
Sbjct: 172 VVQVESDVVVPVEVASDKKEHAARTLRPKLTRHLETYLRDVEEVALRAPSRELGVEGLDL 231

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           T P       +  D     +   F  G +    +LR F +E+   Y   R+ P     S 
Sbjct: 232 TDPGALLASLKL-DTSVAPVRR-FRGGTREGERVLRAFLRERFGDYAATRNQPQTNNVSH 289

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG 304
           +S YL  G +SP      ++          K+        ++ RE   + + + P     
Sbjct: 290 MSKYLHFGQISPVFVALEVQRAGA-----GKNAEVYLEELIVRRELPMNFVFYEPHYDRY 344

Query: 305 KPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                W  K   E   D+      ++      T  P  +AAM+++   G+MHN +RM   
Sbjct: 345 DALPAWARKTLDEHRGDAREHLYTREQLEAAETHDPYWNAAMKEMLHTGYMHNYMRMYWG 404

Query: 359 SFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV------PYFRIF 409
             +++         E          LDG  A++     W     +            R  
Sbjct: 405 KKILEWSPSPEEAFETALHLNNRYFLDGRDANSYANVAWVFGQHDRPWAERAVCGKVRYL 464

Query: 410 NPTIQGKRFDPQGTFIRHWLPEL 432
           +     ++ DP+  ++R  + EL
Sbjct: 465 SAGGLERKADPKA-YVRK-VEEL 485


>gi|255537109|ref|XP_002509621.1| DNA photolyase, putative [Ricinus communis]
 gi|223549520|gb|EEF51008.1| DNA photolyase, putative [Ricinus communis]
          Length = 489

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 79/457 (17%), Positives = 148/457 (32%), Gaps = 38/457 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              + W+  D R+ DN AL  A   ++   + V +A     +  G  ARQ  F+   L  
Sbjct: 25  GPVIYWMFRDQRLRDNWALIHAVDQANKANVPVAVAFNLFDQFLGAKARQLGFMLKGLRL 84

Query: 68  VQKSLSQKG-IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           +Q  + ++  I F   Q +  D   ++L        VT     R+      +    +  R
Sbjct: 85  LQGKIEERLQIPFFLFQGAAEDTIPQFLGECGASLLVTDFSPLREI----RKSKDEICMR 140

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           +   V     D   ++P            +         + + +       P   +    
Sbjct: 141 ISDTVTIHEVDAHNIVPIWVASEKLEYSARTIRSKINKRLPDYLIDFPALRPPNTMWSAA 200

Query: 187 PVTPSNIPRFFDY----PFQAIDPMFP-IGEQNALHIL----RKFCKEKVYYYVEQRDIP 237
                +     D       +  +  +   GE  A+ +L      F  +++  Y   R+ P
Sbjct: 201 ANKSIDWDTLIDEVLRKGAEVPEIEWCMPGEDAAMEVLMGTKNGFLTKRLKNYSTDRNNP 260

Query: 238 AIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLM 295
               G S LSPYL  G +S ++C    ++              S+L ELI  RE   +  
Sbjct: 261 LKPQGLSGLSPYLHFGQISAQRCALEARKAQKLCP----QSVDSFLEELIVRRELADNFC 316

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIGWM 349
            + P     +    W      +  S   +        ++  T   + +A+  ++   G M
Sbjct: 317 FYQPHYDSLQGAWEWARNTLLDHASDKREHIYSKEQLERAQTADLLWNASQLEMVYYGKM 376

Query: 350 HNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS---- 402
           H  +RM  A       +       I         +DG   S   G  W+    +D     
Sbjct: 377 HGFMRMYWAKKILEWTRGPEEALAISTYLNDKYEIDGRDPSGYVGCMWSICGVHDQGWKE 436

Query: 403 ---VPYFRIFNPTIQGKRFDPQG--TFIRHWLPELNN 434
                  R  N     ++F+     T+++ ++ E+  
Sbjct: 437 RPIFGKIRYMNYAGCKRKFNVDSYITYVKRFVSEIKK 473


>gi|330506500|ref|YP_004382928.1| deoxyribodipyrimidine photo-lyase [Methanosaeta concilii GP-6]
 gi|328927308|gb|AEB67110.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Methanosaeta
           concilii GP-6]
          Length = 445

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 137/422 (32%), Gaps = 37/422 (8%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSH 59
           A         W+  + R+ DN  L  A        + +  +F  +P+          Q  
Sbjct: 14  AKERKGAVFYWMSREQRVADNWPLLFAQELAIREKSPLAVLFCISPQFLEATSS---QYK 70

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+   L +V+  L++  I           +  ++L S+     V+       +    ++ 
Sbjct: 71  FMLKGLEEVETDLAELNIPLYLLSGDPAKEIPQFLQSHEAGILVS------DFSPLRIKM 124

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
                   +  + C   D   ++P       +L+       FR  + + L +       +
Sbjct: 125 IWQRSIAKEVNIPCYEVDGHNIVPCWQ---ASLKQEWAAYSFRPKIHRLLDEYLTDFPAL 181

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            A     P    N  R  +   +A           GE+ A   L +F  + +  Y   R+
Sbjct: 182 KAHPFPWPEAVDNDWRGAEMAIRADHISDMSWAQPGERAAKKHLNEFIDQGLVLYDSDRN 241

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHL 294
            P   G S LS YL  G +S ++             +   + +  +L EL + RE   + 
Sbjct: 242 NPVKNGQSGLSFYLHFGQISAQRVALMA--------LSGMTDSSPFLEELVVRRELADNF 293

Query: 295 MAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAW----KQGYTGFPIIDAAMRQLNTIGW 348
             + P     + F  W ++   +   D           ++  T   + +AA  ++   G 
Sbjct: 294 CYYNPHYDSVQGFPNWAQETLRQHENDPREYLYSIKELEEAKTNDELWNAAQTEMVCRGK 353

Query: 349 MHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           MH  +RM  A  +++             Y      LDG   +   G  W+    +D    
Sbjct: 354 MHGYMRMYWAKKILEWTSSPAEAMDIAIYLNNRYELDGRDPNGYTGIAWSIGGVHDRAWK 413

Query: 406 FR 407
            R
Sbjct: 414 ER 415


>gi|327342154|gb|AEA50864.1| cry2-2 [Populus tremula]
          Length = 177

 Score =  133 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 6/179 (3%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  +VW R DLRI DN AL AA    D  V  VFI  P++  Q         ++  SL  
Sbjct: 4   SKTIVWFRRDLRIEDNPALAAAAR--DGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           + +SL   G      +  +   ++  L         T++ +N  Y+   + RD  ++++L
Sbjct: 62  LGQSLKSLGAELVLIKTHS---TVVALLDCIETIGATRVVFNHLYDPVSLVRDHNIKEKL 118

Query: 128 QHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
               I  +S++  +L  P  I +     +  +  +    +   ++      P   +   
Sbjct: 119 VELGISVQSYNGDLLYEPWEIYDERGYAFTTFEAYWDKCLHMQMEPVSHLPPWRLVPAA 177


>gi|167619332|ref|ZP_02387963.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis Bt4]
          Length = 170

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 78/175 (44%), Gaps = 7/175 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +  + +  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSFDSTAPAVVWFRDDLRVSDHPALARAAE-SGRPVIGVYVFD-ERAGGRALGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        +++NR+Y   +   D
Sbjct: 59  LHGSLRALDAALAGLGGRLVLLRGDEADTFV----SFVAALGAGAVYWNRRYAFAQRAFD 114

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
             ++  L   RV  ++F+ S+L  P  I+N   + Y+V+  + +A ++       
Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRGAPPPP 169


>gi|256828229|ref|YP_003156957.1| Deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM
           4028]
 gi|256577405|gb|ACU88541.1| Deoxyribodipyrimidine photo-lyase [Desulfomicrobium baculatum DSM
           4028]
          Length = 452

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 143/449 (31%), Gaps = 38/449 (8%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           A       L W+  D R  DN  L  A      S   V  +F   P+        A   +
Sbjct: 12  APLGQGPVLYWMHRDFRAADNWGLTYARLQALKSGQPVAVIFCLAPDFAEAT---AVHFN 68

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+   L +  ++L ++ I F         +   +  +      VT       ++   ++ 
Sbjct: 69  FLLDGLTKTAQTLRRQNIPFFALSGIPGLEVANFARTLKASLVVT------DFDPLRIKA 122

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
               +            D   ++P   + +    M +   P  K L+   +         
Sbjct: 123 QWHKDLLSAWNQAVHEVDSRNIVPARVVSDRREFMARTLRPKIKRLLGEFLDEFPVLPMH 182

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIP 237
           P    T    P                      GEQ A  +L  F + K+  Y   R+ P
Sbjct: 183 PHPWPTAVSAPDFSSLRHKIRDDGRRQALRVEPGEQPARDLLCHFLQNKLPVYA-NRNDP 241

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA 296
                S LS +L  G+LS ++     +   +           ++L+ELI  RE   +   
Sbjct: 242 NQDVCSSLSAHLHFGMLSAQRAALETQACGL-----AGENVDAFLDELIVRRELSDNFCL 296

Query: 297 FYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMH 350
             P     + F  W ++   +  +D   +    +      T  P+ +AA  Q+   G MH
Sbjct: 297 HTPGYDTEEGFPAWAKESLHKHLRDPRPVIYSPEELEAARTHDPLWNAAQTQMLRSGKMH 356

Query: 351 NRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS----- 402
             LRM  A  +++         R          LDG  ++   G  W+    +D      
Sbjct: 357 GYLRMYWAKKILEWSLSAADALRTAIRLNDRYSLDGRDSNGYTGIAWSIGGVHDRGWTER 416

Query: 403 --VPYFRIFNPTIQGKRFDPQGTFIRHWL 429
                 R  N     ++FD    F+R W+
Sbjct: 417 PIFGKIRFMNLAGARRKFDVD-RFVRSWI 444


>gi|159043938|ref|YP_001532732.1| putative deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae
           DFL 12]
 gi|157911698|gb|ABV93131.1| putative deoxyribodipyrimidine photo-lyase [Dinoroseobacter shibae
           DFL 12]
          Length = 405

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 87/208 (41%), Gaps = 13/208 (6%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCW 260
           D  FP      L  LR F  +    Y   R+           SQLSPYL   +++  +  
Sbjct: 4   DTAFPPTRDAGLARLRDFLPKAAGDYTRGRNYDLPEQGHPHVSQLSPYLRHRLVTEGEVL 63

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK--PFIPWTEKIEWNK 318
           + +   F          A  ++ E+ WR +++  +   PSV M          +++    
Sbjct: 64  DAVLGRF------SLKSAEKFVQEVYWRTYWKGWLERRPSVWMAYKGGLSQALDRLHVES 117

Query: 319 D-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
                 +A  +G TG    DA  R+L + G+MHN  RM  AS  +  L + W +G ++F+
Sbjct: 118 GFRAEWEAACKGETGIDGFDAWARELVSTGYMHNHARMWFASIWIFTLRLPWELGADFFL 177

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPY 405
             LLDGD ASN   W+W A        Y
Sbjct: 178 RHLLDGDAASNTLSWRWVAGLQTQGKNY 205


>gi|226228098|ref|YP_002762204.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27]
 gi|226091289|dbj|BAH39734.1| deoxyribodipyrimidine photolyase [Gemmatimonas aurantiaca T-27]
          Length = 495

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 154/457 (33%), Gaps = 51/457 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+++  R+ DN  L AA   +D   + V +           SAR   FI        +
Sbjct: 38  LYWMQSTHRLDDNWGLRAAIRTADRLKLPVVVHQGLDPTYPHASARHHTFILQGARDTAR 97

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
                GI +Q+       D    +D    +  V  +F +         R     +R+  R
Sbjct: 98  QAEALGIHYQFVLRPQRTDDARVVDRLAARAYV--VFTDLFPTAGVRERVARFAQRVTCR 155

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT----- 185
           V+     DSV   P  +   A    +   P    L+ + ++      P   +  +     
Sbjct: 156 VLAV---DSVCTVPSGLFEKAEYAARTIRPKLARLLAHAIEPVEDHTPRSDVSTSLATSL 212

Query: 186 -------GPVTPSNIPRFFD-----------YPFQAIDPMFPIGEQNALHILRKFCKEKV 227
                  G + P +I +  D                     P G   A     +F +  +
Sbjct: 213 RATVAEGGGLVPLDIAQMDDAAIARTVAGCAIDHDVCAVPMPGGSSAANARWTRFLEHGL 272

Query: 228 YYYVEQRDIPA-IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL- 285
             Y E+R+  +  +GTS+LSPYL  G +S  +     ++  V       +   +++ ++ 
Sbjct: 273 PQYDERRNEASDGEGTSRLSPYLHFGQISSARVVREAQQAGV-----GAANLDAFVQQIT 327

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS----HLLQAWKQGYTGFPIIDAA 339
            WRE   +     P+         W ++   E   D     +     ++  TG  + +AA
Sbjct: 328 TWRELSYNWCVRTPAFDQLSALPAWVQRTMQEHVNDPRPELYTRDQLERAQTGDRLWNAA 387

Query: 340 MRQLNTIGWMHNRLRMITAS---FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
             +L   G +HN  RM+         +D                LDG  A++ GG  W  
Sbjct: 388 QTELVQEGIIHNYPRMLWGKTVLLWTRDYEDARTWLFHLNDKYALDGRDANSVGGIMWCL 447

Query: 397 STGNDS---VPYFRIFNPTIQGK---RFDPQGTFIRH 427
              +      P +    P    +   +FD +G +I  
Sbjct: 448 GLWDRPWGNRPVWGGLRPMATARAKTKFDVEG-YIAR 483


>gi|159469690|ref|XP_001692996.1| CPH-like protein [Chlamydomonas reinhardtii]
 gi|158277798|gb|EDP03565.1| CPH-like protein [Chlamydomonas reinhardtii]
          Length = 443

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 99/312 (31%), Gaps = 56/312 (17%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI-------------- 53
              LVW RNDLR+ DN AL  AC  S + V+ V++  P  + + G               
Sbjct: 42  KAALVWFRNDLRLHDNPALEQACRQS-SSVLPVYVFDPRDYGKAGYSVCLLPQTPSGFDR 100

Query: 54  -SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
               ++ F+  ++  +++ L   G                 L           ++   + 
Sbjct: 101 TGPGRARFLLEAVADLRQRLRDAGSDLVVR----LGRPEAVLKELAAAVGAGAVYCQSEV 156

Query: 113 EINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
              E++ +  +   L +     +      L     +      M   Y  FR+ +    V+
Sbjct: 157 TAEEMQVEGRVRAALDRESCELRPQWGGTLFHLEDLPFRLDAMPTSYADFRERVANLKVR 216

Query: 172 ADLRSL-PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----------------------- 207
               S   +  +     V P +IP      F                             
Sbjct: 217 QLSESDGGIKGLPAGNSVEPGDIPTLQRLGFSPAAATAGAAAPGSGLGAPLQLGGGPALV 276

Query: 208 FPIGEQNALHILRKFCKE-----------KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSP 256
              GE  AL  ++ F  E                      P+   + ++SP+L++G LSP
Sbjct: 277 LRGGESEALRHMQAFIDELRRAVSGAAAAASGSGKPGAAPPSATFSCRISPWLALGCLSP 336

Query: 257 RQCWNRLKEEFV 268
           R+ ++ ++++  
Sbjct: 337 RRMYHEMRQQLA 348


>gi|167581247|ref|ZP_02374121.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis TXDOH]
          Length = 168

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 7/174 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M +  + +  +VW R+DLR++D+ AL  A   S   VI V++   E+     +      +
Sbjct: 1   MSSFDSTAPAVVWFRDDLRVSDHPALARAAE-SGRPVIGVYVFD-ERAGGRALGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        +++NR+Y   +   D
Sbjct: 59  LHGSLRALDAALAGLGGRLVLLRGDEADTFV----SFVAALGAGAVYWNRRYAFAQRALD 114

Query: 121 KLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
             ++  L   RV  ++F+ S+L  P  I+N   + Y+V+  + +A ++      
Sbjct: 115 NAVQTALDARRVAVETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRGAPPP 168


>gi|303276170|ref|XP_003057379.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461731|gb|EEH59024.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 431

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 144/425 (33%), Gaps = 35/425 (8%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +  L+W+++  R + N+AL  AC  ++     V+AVF      +   G  AR   F+Y  
Sbjct: 2   THVLLWVQSAQRASHNEALELACARANVHGVPVVAVF-GGTAGFPGGGSGARHLRFMYEG 60

Query: 65  LLQVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           L +++ +L++ +G+          D  I         +R  ++  +  Y     R  + +
Sbjct: 61  LCELEDALARTRGVRLLGFAGEVPDVVIAA------SRRAVEVVTDAGYTRTLRRWREKV 114

Query: 124 EKRLQHRVICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
              +Q        D  + L  PG              P     ++ L   +  +  +   
Sbjct: 115 AGGVQCATTEVECDVVAPLYAPGGGAGRGEPAAATLRPKIWPRLEALASREATTTTLALA 174

Query: 183 RLTGPVTPS------NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                           +  F   P          GE  A   L  F   ++  Y  +R+ 
Sbjct: 175 ASGAEEALELVGGAAAMAAFPRLPVPPCPGYHAGGEAEAHRKLEVFLSRRLDDYASKRND 234

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLM 295
           P +   S LSP++  G +S      R  E       +       +L+EL I RE   + +
Sbjct: 235 PGLGLQSHLSPHIHYGQISVVYVTRRALE-VKRRDPRHARSVDVFLDELVIRRELAINFV 293

Query: 296 AFYPSVCMGKPFIPWT---------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
              P          W          +   W+         ++G T   + +AA R+L T 
Sbjct: 294 LNNPKYDSYDGLPRWARITLADHAGDARRWSYTREEF---ERGLTHDALWNAAQRELLTS 350

Query: 347 GWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           G  HN +RM  A       +D    WR+  E      LDG   S+  G  W     +   
Sbjct: 351 GKQHNYVRMYWAKKILEWSEDPAEAWRVAIELNNKYSLDGRDPSSYTGVGWCFGLHDKPF 410

Query: 404 PYFRI 408
           P  +I
Sbjct: 411 PETQI 415


>gi|116075573|ref|ZP_01472832.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           RS9916]
 gi|116066888|gb|EAU72643.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           RS9916]
          Length = 321

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/255 (24%), Positives = 107/255 (41%), Gaps = 8/255 (3%)

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRK 221
           +++  V   L   P P            + +  +  F   +        G   A H L++
Sbjct: 1   MLEQPVPPPLAWDPAPGDLSRDFDDRQALAQLLETQFPEAEGELSPLQGGRTAAEHQLKR 60

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
               +   Y   R+       + LSP++  GVL+  +  + +  +  +   +   GA   
Sbjct: 61  ---VEAKRYGRSRNHLDG-AVTGLSPWIRHGVLTLAEVRDAVFAQLNERHQRRDDGA-KL 115

Query: 282 LNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           +NEL WR+F++ + +              T     +    L    ++G TG   +DA  R
Sbjct: 116 INELGWRDFWQRMWSDLGDGINDDQEALNTGHDPASYARSLPTDIREGNTGLACMDAFQR 175

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L T GW+HN  RM  A+++V    V W+ G ++F+  LLDGD ASN+  WQW AS+ + 
Sbjct: 176 ELVTHGWLHNHARMWMAAYVVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASSFSH 235

Query: 402 SVPYFRIFNPTIQGK 416
              +F   N     K
Sbjct: 236 KPYFFNRDNLERYSK 250


>gi|92429522|gb|ABD93505.2| DNA photolyase protein [Physalis sp. TA1367]
          Length = 190

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 76/195 (38%), Gaps = 12/195 (6%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLL 66
           VW RNDLR+ DN+ L AA HN    V+ V+   P  + +           ++ F+  S+ 
Sbjct: 1   VWFRNDLRVHDNECLNAA-HNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVA 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++K+L  +G                 L           ++ +R+   +EV+ ++ +E  
Sbjct: 60  DLKKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEEKIEGV 115

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRL 184
           ++   V  K F  S L     +      M   Y  FR+ +    ++  + +L     +  
Sbjct: 116 MKDEGVDVKFFWGSTLYHVDDLPFKLEGMPTNYGGFREKVKGLEIRKTIEALDQMRGLPA 175

Query: 185 TGPVTPSNIPRFFDY 199
            G V P  IP   D 
Sbjct: 176 RGDVEPGEIPSLVDL 190


>gi|147791052|emb|CAN68022.1| hypothetical protein VITISV_003623 [Vitis vinifera]
          Length = 212

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 83/208 (39%), Gaps = 12/208 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLL 66
           VW RNDLR+ DN+ L +A + S   ++ V+   P  + +           ++ F+  S+ 
Sbjct: 7   VWFRNDLRVHDNECLNSASNES-MSMLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 65

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            ++++L ++G                 L           ++ +R+   +EV+ ++ +E  
Sbjct: 66  DLRQNLQKRGSDLVVR----IGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKIEAA 121

Query: 127 LQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRL 184
           ++   V  K F  S L     +     QM   Y  F++ +    ++  + +L  +  +  
Sbjct: 122 MKEEGVEXKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKGLEIRKTIATLDQLRGLPA 181

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGE 212
            G V    IP   D     +  +F IG 
Sbjct: 182 RGDVEAGEIPSLLDLGKTVLGWIFYIGR 209


>gi|40556144|ref|NP_955229.1| CNPV206 putative photolyase [Canarypox virus]
 gi|40233969|gb|AAR83552.1| CNPV206 putative photolyase [Canarypox virus]
          Length = 472

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 88/437 (20%), Positives = 148/437 (33%), Gaps = 32/437 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  D RI DN AL  A   +    I + I        H  ++R   F+   L ++ +
Sbjct: 31  LYWMVRDQRIQDNWALIYAQRIALHLKIPLRICFCIVPGFHTTTSRHFSFLLDGLKEIAE 90

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              +  I F              +  Y +   +T  F  R  E    +  K +   L  +
Sbjct: 91  ECIKLSIGFNAVYGLPNVLIPSIIKKYKVGVVITDFFPLRVPE----KLIKQVTSVLPDK 146

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V+    D   ++P     +      +      +  I  ++   L   PV      GP + 
Sbjct: 147 VVFIQVDAHNIVPCWEASHKQEYGART----LRKKINGMLDTYLTEFPVITKHPYGPFSV 202

Query: 191 SNIPR---FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           S        FD     +    P G + A  +L  F K ++  Y    + P  +  S LSP
Sbjct: 203 SIANNKGVEFDDTVHPVSWAVP-GSKAAFKVLDDFLKNRLAAYESDHNNPTCEALSNLSP 261

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +S ++    + E      I PKS +      +I RE   +   +       +  
Sbjct: 262 WLHFGHISAQRV---VLETLKYKSIHPKSVSVFLDEIIIRRELADNFCYYNKRYDSIEST 318

Query: 308 IPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF- 360
             W  +       +  K  + L+  ++  T  P+ ++A  Q+  +G MH+ LRM  A   
Sbjct: 319 HSWARETLEAHVNDRRKYIYSLKQLERAETHDPLWNSAQIQMVRLGKMHSFLRMYWAKKI 378

Query: 361 --LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNP 411
               +      R          LDG   +   G  W+    +D            R  N 
Sbjct: 379 LEWTRSPKEALRYSIYLNDKYELDGTDPNGYVGCMWSICGLHDRAWSERPIFGKVRYMNY 438

Query: 412 TIQGKRFDPQGTFIRHW 428
               K+FD    FI  +
Sbjct: 439 EGTKKKFDVNA-FISKY 454


>gi|91762575|ref|ZP_01264540.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718377|gb|EAS85027.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 380

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 11/203 (5%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNR 262
           +F      A+  L  F ++ +  Y + R+          TS LSPY++ G+++  +  ++
Sbjct: 2   IFEASRAKAVDKLTNFIEQNLSDYSKLRNFDFGPSNRSNTSCLSPYITHGIINELEVVDK 61

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             ++F        +    ++ E++WR +++  +   P+V           K E+  + + 
Sbjct: 62  SLKKF------SFAKNEKFIQEVLWRVYWKGWLELRPNVWSDYLIELGKFKGEFKNNQNY 115

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L A  +G T     +  + +L    ++HN  RM  AS  +  L + W++G E+FM  L D
Sbjct: 116 LDAI-EGKTNIDCFNEWVIELKENNYLHNHTRMWFASIWIFTLELPWQLGAEFFMQHLFD 174

Query: 383 GDLASNNGGWQWAASTGNDSVPY 405
           GD ASN  GW+W A        Y
Sbjct: 175 GDAASNTLGWRWVAGVQTQGKHY 197


>gi|168024934|ref|XP_001764990.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens
           subsp. patens]
 gi|162683799|gb|EDQ70206.1| PHR1 AtPHR1-like type 2 CPD DNA photolyase [Physcomitrella patens
           subsp. patens]
          Length = 495

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 80/443 (18%), Positives = 143/443 (32%), Gaps = 33/443 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              + W+  D R  DN AL  A H +  K + V +A           AR   F+   L  
Sbjct: 27  GPVVYWMSRDHRSRDNWALLHAVHQAREKGVPVAVAFNLVESFLEARARHFGFMLRGLRV 86

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL--LEK 125
           V+++L    I F   + +  +   E+L        V        Y    + R     + +
Sbjct: 87  VEQNLKAVNIPFFLFRGNPVETIPEFLKKCNASLLVM------DYSSLRIGRQWRNGVCE 140

Query: 126 RLQHRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            +   V     D   ++P     +        +       L + L +  +   P      
Sbjct: 141 NVASSVAVAEVDAHNVVPVWRASDKLEYGARTIRNKINNQLAEFLNEYPVLENPGKPWEA 200

Query: 185 TGPVTPSNIPRFFD---YPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQRDI 236
             P T        +   +  +  +  +   GE  AL  L    + F   ++  YV  R+ 
Sbjct: 201 GAPDTIDWDALIAEVSRFGSEVPEVTWCEAGEDAALEALAGKSKGFVNIRIRNYV-NRND 259

Query: 237 PAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
           P+   G S LSPYL  G +S ++C    ++          +     +      E + H  
Sbjct: 260 PSKPTGLSGLSPYLHYGHISAQRCALEARKVRKVHTKSVDAFLEELIVRGGLAENFCHYQ 319

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQ---AWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
             Y ++     +   + +I       ++      + G T   + +AA  ++   G MH  
Sbjct: 320 PNYDNLKGAWGWAQESLRIHAKDKREVVYTESELEAGKTHDKLWNAAQLEMVYYGKMHGF 379

Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------- 402
           +RM  A       +      RI         LDG   +   G  W+    +D        
Sbjct: 380 MRMYWAKKILEWTESPEEALRIAIYLNDKYELDGRDPNGYVGCMWSICGIHDQGWKERPV 439

Query: 403 VPYFRIFNPTIQGKRFDPQGTFI 425
               R  N     ++F+  G +I
Sbjct: 440 FGKIRYMNFNGCKRKFNVDG-YI 461


>gi|302336786|ref|YP_003801992.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301633971|gb|ADK79398.1| DNA photolyase FAD-binding protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 453

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 72/443 (16%), Positives = 137/443 (30%), Gaps = 44/443 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++ + + + +         G   R   F+   + Q++ 
Sbjct: 23  LYWMQQSQRSRYNHALEYALGEANRRSLPLLVLFVVSRDYLGAGRRHYRFLLEGIEQLEV 82

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+ +GI F            E             + ++  Y     R  +         
Sbjct: 83  DLADRGIGFLLKIGDPPGIVAE------FAADAALVVFDTGYT-RLQRSWRKAAAAGSFC 135

Query: 131 VICKSFDDSVLLPPGSILNHALQ-------MYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
                 +  +++P   +   + +       + +  TP     +Q L +   +        
Sbjct: 136 APVMEVESDLVVP---VRTASGKEEYSAATIRRKITPLLFRFMQPLKRQSAKIDSTALAG 192

Query: 184 LTGPVTPSNIPRFFDYPFQAIDP--MFPIGEQNALHILRKFC-KEKVYYYVEQRDIPAIQ 240
               +          +    ++P      G   A   L  F     +  + E+R+ P+ +
Sbjct: 193 RADGLDSKAAEELLRFSQPEVEPVSWIHGGSVEAHRRLDAFITSGTLERFHEERNDPSKE 252

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
           G S +SPYL  G +S  +   R  E        P  G  ++L ELI R        FY  
Sbjct: 253 GLSCMSPYLHYGQISALEIALRASEH-------PGPGCEAFLEELIIRRELAFNFVFYNR 305

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQ-------AWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                  +P   + +        +         ++  T  P  +AA R+L   G MH  +
Sbjct: 306 FYDSFEALPRWAREDLEAHEGDKREVLYDDAQLEEAKTHDPYWNAAQRELTHKGKMHGYM 365

Query: 354 RMITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDSV------P 404
           RM     +++         E          LDG   +   G  W     +          
Sbjct: 366 RMYWGKKILEWSASPREAFERALRLNDRYSLDGRDPNGYTGVAWCFGKHDRPWASRPVFG 425

Query: 405 YFRIFNPTIQGKRFDPQGTFIRH 427
             R  N     ++FD   ++++ 
Sbjct: 426 KIRYMNDRGLERKFD-IASYVKQ 447


>gi|118175518|gb|ABK76277.1| CPD photolyase [Dunaliella salina]
          Length = 529

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 92/480 (19%), Positives = 157/480 (32%), Gaps = 72/480 (15%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNS-----------------------------D 34
            +     + W+  D+R++DN AL   C  +                              
Sbjct: 46  NSPTPPVVYWMSRDMRVSDNWALLQGCQEALQRLQLASHADTAAAAAAATAAHSSPALAQ 105

Query: 35  AKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWL 94
             ++  F   P+     G  AR   F+   L +++  L Q  I F   +    D   + +
Sbjct: 106 PPLVVAFNLVPQFL---GAGARSFCFMLKGLRELETKLRQFNIPFYLLRGQPEDTIPQLV 162

Query: 95  DSYCLQQRVTKLFYNRQYEINEV--RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHA 151
           D+      V+       Y    +  +  + +  +LQ + +  +  D   ++P     N  
Sbjct: 163 DALRAGLVVS------DYSPLRLSKQWKQQVAAKLQAKGVGFQVVDAHNVVPAKIASNKR 216

Query: 152 LQMYKVYTPFRKALIQNL----VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP- 206
               +   P  + L+           L  +   A +   P TP + P       +A    
Sbjct: 217 EYAARTIRPKIEKLLPEFLIEFPNQGLPPIMPTAGQGPHPPTPIDWPALLAEVTEAGAAV 276

Query: 207 ----MFPIGEQNALHILRK---FCKE-KVYYYVEQRDIPA-IQGTSQLSPYLSIGVLSPR 257
                   GE  A   L     F    ++  Y  +R+ P+   G S LSPYL  G LS  
Sbjct: 277 PEVDWITPGEAAARAALDGSQGFLTTPRIAQYHVKRNDPSCTTGLSNLSPYLHFGQLSA- 335

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIE- 315
               R   E   L  + +     +L ELI  RE   +     P      P   +   ++ 
Sbjct: 336 ---QRAALEASKLRSRHREAVDRYLEELIVRRELADNFCEHCPDYDKLVPGTAYDWALKS 392

Query: 316 ---WNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                +D   +   +Q    G+TG  + +A   +L   G MH  +RM  A  +++     
Sbjct: 393 LEKHKRDPRPITYTRQQLESGHTGDDLWNAGQMELVRQGKMHGYIRMYWAKKILEWSGTP 452

Query: 369 WRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD-PQGTF 424
               E          LDG   S   G  W+ +  +D     R     I+   +D  +G F
Sbjct: 453 EEAVENAIYLNDKWSLDGRDPSGYTGVMWSVAGVHDRAWIDRPIYGKIRVMTYDGCKGKF 512


>gi|47227913|emb|CAF97542.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 508

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 139/438 (31%), Gaps = 26/438 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVF-IATPEQWRQHGISARQSHFIYASLLQVQ 69
           L W+  D R+ DN AL  A   +  + + +         +    + R   F+   L +V 
Sbjct: 75  LYWMLRDHRVQDNWALIHARRLALEEKVPLHVCVCLHVPKSQLSTLRHYSFLLKGLEEVA 134

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
                 GI F   +    D    ++     Q       ++   E      D  ++K+L  
Sbjct: 135 AECKALGIQFHLLRGPAGDLLPGFVSE--QQLGAVVTDFSPLREPLTWLED--VKKKLPK 190

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADL-RSLPVPAIRLTGP 187
            V     D   ++P            +       K L + L    L    P  A R   P
Sbjct: 191 DVPLIQVDAHNIVPCWVASPKLEYAARTIRGKITKQLPEFLTDFPLVEKHPHAATRTAKP 250

Query: 188 VTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
           V    +           +  +   G    L +L  F   ++  +  QR+ P     SQLS
Sbjct: 251 VDWRELLSSLGVDRTVGETEWARPGAAAGLAMLESFIDVRLKRFDSQRNDPNAAALSQLS 310

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P++  G +S ++   +++     L +   S     +      + +      Y SV     
Sbjct: 311 PWIRFGHVSAQRVALQVQRGGRKLGVGVSSFIEELVVRRELTDNFCFYNEKYDSVEGAYE 370

Query: 307 FIPWTEKIEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
           +   T K +  KD       ++      T   + +AA  Q+   G MH  LRM  A  ++
Sbjct: 371 WARKTLK-DHAKDKRPYIYTREQLEKAETHDKLWNAA--QVVREGKMHGFLRMYWAKKIL 427

Query: 363 KDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPT 412
           +                    LDG   +   G  W+    +D            R  N  
Sbjct: 428 EWTPSPEEALASALYLNDRYELDGQDPNGFVGCMWSICGIHDQGWAERPVFGKIRYMNYK 487

Query: 413 IQGKRFDPQGTFIRHWLP 430
              ++FD    F R + P
Sbjct: 488 GCLRKFDV-AAFERKYGP 504


>gi|317968593|ref|ZP_07969983.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CB0205]
          Length = 302

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 100/248 (40%), Gaps = 10/248 (4%)

Query: 168 NLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
             +  +     +P            + + F     ++ P+   G   A  +LR+    + 
Sbjct: 1   MPLNWEEHPGDLPRQFSDRSALECTLQQLFPEASGSLSPI-QGGRSQADALLRR---VQP 56

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y + R+  +    ++LSPY+  G +S  +  + +         K +  +   +NEL W
Sbjct: 57  ERYAKARNFLSGP-VTRLSPYIRHGAISLAEVRDAVF-----ARTKQRQASEKLINELGW 110

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R++++ L                T          L     +G TG   +D   ++L   G
Sbjct: 111 RDYWQRLWEQLGDGIWSDQEPLKTGHHPGAYAPELPADITEGRTGLACMDGFSQELQQTG 170

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+HN  RM  A+++V    + W+ G ++F+  LLDGD ASNN  WQW AS+ +    +F 
Sbjct: 171 WLHNHARMWLAAYVVHWRRIRWQAGAQWFLRHLLDGDPASNNLSWQWVASSFSHKPYFFN 230

Query: 408 IFNPTIQG 415
             N     
Sbjct: 231 RSNLERYS 238


>gi|307110754|gb|EFN58989.1| CPD photolyase [Chlorella variabilis]
          Length = 444

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 142/440 (32%), Gaps = 39/440 (8%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
            D R+ DN AL  A   +  + + V +A           ARQ  F+   L  +Q  L   
Sbjct: 3   RDQRVRDNWALLHAAAEASKRGVPVAVAFNLVTEYLHAGARQFGFMVRGLRLMQPKLQAL 62

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS 135
            I     +     D +E +         + L     +    + R        + +V    
Sbjct: 63  NIPLFLLKG----DPLETVPQLVKDTGASLLVT--DFAPLRLGRHWREGVAAKIKVPFHE 116

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
            D   ++P     +      +   P   + +   +    +  P P           +   
Sbjct: 117 VDAHNVVPVWVASDKREYAARTIRPKIHSKLPEFLTEFPQLEPQPEWSSGVTPEAVDWDA 176

Query: 196 F----FDYPFQAIDPMFP-IGEQNALHIL---RKFC--KEKVYYYVEQRDIPAI-QGTSQ 244
                 +   +  +  +   GE  A+  L   + F   K ++  Y E+R+ P +    S 
Sbjct: 177 LLAEVLERGKEVPEVRWCAPGEDAAMEALSGPKGFLGSKARLARYEEKRNDPTVPDALSG 236

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCM 303
           LSPYL  G LSP     R   E        K+    +L ELI  RE   +   + P+   
Sbjct: 237 LSPYLHFGHLSP----QRAAVEAARNKAVHKASVEGFLEELIVRRELADNYCFYVPNYDS 292

Query: 304 GKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                 W  +   +   D       ++    G T   + +AA  ++   G MH  +RM  
Sbjct: 293 LDAAYDWARQTLNDHRGDKREHVYTREQFEKGQTHDKLWNAAQAEMVHFGKMHGFMRMYW 352

Query: 358 ASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-------VPYFR 407
           A  +++             +      LDG  A+   G  W+ +  +D            R
Sbjct: 353 AKKILEWSASPEEALEISIWLNDKYELDGRDANGYVGCMWSIAGIHDQGWAERPVFGKIR 412

Query: 408 IFNPTIQGKRFDPQGTFIRH 427
             N     ++FD +  ++  
Sbjct: 413 FMNFAGCKRKFDVE-KYVAR 431


>gi|126727584|ref|ZP_01743417.1| DNA photolyase-like protein [Rhodobacterales bacterium HTCC2150]
 gi|126703174|gb|EBA02274.1| DNA photolyase-like protein [Rhodobacterales bacterium HTCC2150]
          Length = 407

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 13/204 (6%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNR 262
            F       +  + +F      +Y  +R+           S LSP++   +++  +   +
Sbjct: 9   AFEPTRSAGIVRMEQFAIRTGAHYASKRNYDLGANNRSTVSALSPWIRHRLITEEEVLTQ 68

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
               +        S A  ++ E+ WR +++  +  +PSV         T +   + ++ L
Sbjct: 69  TLARY------SPSTAMKFIQEVFWRGYFKGWLEQHPSVWNSYKQGVRTAQNRLHSNAEL 122

Query: 323 ---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
                   +G TG    D   R+L   G++HN  RM  AS  +  L + W +G ++F++ 
Sbjct: 123 NADYIGAIEGRTGIACFDHWCRELVETGYLHNHARMWFASIWIFTLRLPWELGADFFLNH 182

Query: 380 LLDGDLASNNGGWQWAASTGNDSV 403
           L+DGD ASN   W+W         
Sbjct: 183 LIDGDSASNTLSWRWVGGLHTKGK 206


>gi|149928547|ref|ZP_01916775.1| probable deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
 gi|149822733|gb|EDM81992.1| probable deoxyribodipyrimidine photolyase [Limnobacter sp. MED105]
          Length = 426

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 17/214 (7%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           F    + AL+ L          Y   R+       + LSP+++ G LS R+    L E++
Sbjct: 9   FEPSRRAALNAL---ATVDPALYSRTRNFLDG-AVTGLSPWITHGYLSVREAAQLLMEKY 64

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN--KDSHLLQA 325
                         + E  WREF++H  A      +G   +    +  W+   +  L + 
Sbjct: 65  RLSFED------KLIFEFAWREFFKHAHA-----ELGNGILSDVRRPVWSGKYNQQLPED 113

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
            ++G TG   IDA +  L   G++HN +RM  AS++V    V W++G ++  + LLDGDL
Sbjct: 114 IREGRTGVEAIDAGVALLYETGYLHNHVRMWIASYVVHMRKVHWKVGADWMYAHLLDGDL 173

Query: 386 ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD 419
           ASN+  WQW A T +     F   N      ++D
Sbjct: 174 ASNHLSWQWVAGTFSHKPYVFNADNVKKYAPKWD 207


>gi|294892053|ref|XP_002773871.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
           50983]
 gi|239879075|gb|EER05687.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
           50983]
          Length = 480

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 80/447 (17%), Positives = 147/447 (32%), Gaps = 52/447 (11%)

Query: 19  RITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
           R  DN AL  A          ++ V+          G   RQ  F    L  + K+L  K
Sbjct: 6   RSMDNWALLYAQNLALEGKQPLLVVYNLAIGYL---GGGLRQHVFKVGGLRVLAKNLRDK 62

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI---NEVRRDKLLEKRLQHRVI 132
           GI F+     +F    + L         + +     +     N+   D  +++  +  + 
Sbjct: 63  GISFRVDYSKDF---PKALSKMVTMLGCSHVVT--DFTPLKVNKAWEDAFIKEAERLGIR 117

Query: 133 CKSFDDSVLLPPG-----------SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
               D   ++P             +I     + +  Y+     L ++    D     + +
Sbjct: 118 FDQVDAHNIVPCWVASDKLEYAARTIRPRLWRNWDTYSTEFPTLHKHPYHYDGAHFEITS 177

Query: 182 IRLTGPVTPSNIPRFF---DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                 +   N  +     D+  + +  + P GE   L  L  F K  +  Y + R+ P 
Sbjct: 178 EACFDMLLSDNEQQLLAGLDHGVKPVTKVLP-GEDAGLEHLYTFIKN-MKGYSQFRNDPT 235

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAF 297
               S LSPY   G++SP++    +          PK    +++ E  I RE   +   +
Sbjct: 236 KNAISDLSPYFHYGMVSPQRAVMEV----AKAKSIPKPDRDAFIEEAFIRRELADNFCYY 291

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             +    + F  W +K   + ++        L   ++  T   + +A   Q+   G MH 
Sbjct: 292 NENYDRFEGFHNWAQKTLQDHEADKRKYVYSLSQLEKASTHDELWNACQNQMLKSGKMHG 351

Query: 352 RLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS------ 402
            LRM     +++      +      Y      LDG   +   G  W+    +D       
Sbjct: 352 YLRMYWGKKILEWTENPRQALKFAIYLNDKYELDGRDPNGYVGCAWSIGGIHDQGWAERP 411

Query: 403 -VPYFRIFNPTIQGKRFDPQGTFIRHW 428
                R        ++FD Q  +I  W
Sbjct: 412 IFGKIRYMTYDGCKRKFDIQ-KYINKW 437


>gi|186686489|ref|YP_001869685.1| deoxyribodipyrimidine photolyase-like protein [Nostoc punctiforme
           PCC 73102]
 gi|186468941|gb|ACC84742.1| deoxyribodipyrimidine photolyase-like protein [Nostoc punctiforme
           PCC 73102]
          Length = 295

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 9/207 (4%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            G + A   L+K        Y + R+       ++LSPY+  GVLS R+  + + ++   
Sbjct: 38  GGRKAAQDALQKI---DPVRYAQTRNF-FTGAVTRLSPYIRYGVLSLREIRDYVLDQVQQ 93

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                K+ A   +NEL WR++++ L                T          L Q  +QG
Sbjct: 94  -----KNDATKLINELGWRDYWQRLYVKLGDEIWKDQEEYKTGYTVAEYLPELPQDIRQG 148

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG   ID+    L   G++HN  RM  A+++V    + W+ G ++F+  LLDGD ASNN
Sbjct: 149 TTGRVCIDSFSHDLKETGYLHNHARMWLAAYIVHWRRIGWQAGAKWFLEHLLDGDPASNN 208

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGK 416
             WQW AST +    +F   N     +
Sbjct: 209 MSWQWVASTFSQKPYFFNRENLERYTE 235


>gi|71083003|ref|YP_265722.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062116|gb|AAZ21119.1| DNA photolyase-like protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 380

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 13/204 (6%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNR 262
           +F      A+  L  F ++ +  Y + R+           S LSPY++ G+++  +  N+
Sbjct: 2   IFEASRAKAVDKLNTFVEQNLSDYSKLRNFDFGPSNRSNVSCLSPYITHGIINELEVINK 61

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSH 321
             ++F        +    ++ E++W  +++  +   P V     ++   +KI+   K++ 
Sbjct: 62  SLKKF------SFANNEKFIQEVLWHVYWKGWLELRPDVWSD--YLIELDKIKKEFKNNQ 113

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
                 +G T     +  + +L    ++HN  RM  AS  +  L + W++G E+FM  L 
Sbjct: 114 SYLDATEGKTNVDCFNQWVSELKENNYLHNHTRMWFASIWIFTLELPWQLGAEFFMQHLY 173

Query: 382 DGDLASNNGGWQWAASTGNDSVPY 405
           DGD ASN  GW+W A        Y
Sbjct: 174 DGDAASNTLGWRWVAGIQTQGKHY 197


>gi|318041064|ref|ZP_07973020.1| DNA photolyase, FAD-binding protein [Synechococcus sp. CB0101]
          Length = 314

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 13/204 (6%)

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAA 339
             + L W         + P + +   + P     E + +   L  AW++G TGFPI+DAA
Sbjct: 3   LASRLRWGCAIHQRFRYLPQLELIALWSPLDTHCELSAQQEELYAAWREGRTGFPIVDAA 62

Query: 340 MRQLNTIG-WM--HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
            R L   G W+  + R R I ASFL     +DWR G  ++M  L+DGD   ++  W   A
Sbjct: 63  ARCLQAEGGWLELNFRSRAIYASFLSNLCGIDWRFGALHYMRHLIDGDCPIDHYQWAMQA 122

Query: 397 S-TGNDSVPYFRIFNPTIQG-KRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSL 454
             T + +  + RI++P      R DP G FIR WLPEL  +    +  P +         
Sbjct: 123 GVTYHGTKAWTRIYHPGQVAVDRCDPHGLFIRRWLPELRGLTNDQLGTPPAMA------- 175

Query: 455 NYPLPIVDHKKACHHTLNQYYAAK 478
           +YP P++D++ +    L      +
Sbjct: 176 DYPAPVLDYETSRRLRLEALEQQR 199


>gi|169159213|dbj|BAG12106.1| CPD photolyase [Glycine max]
          Length = 500

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 87/467 (18%), Positives = 147/467 (31%), Gaps = 44/467 (9%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           +  + +   + W+  D R+TDN AL  A   ++   + V +         G  +R   F+
Sbjct: 23  RGESGLGPVVYWMFRDQRVTDNWALIHAVAEANKANVPVAVVFNLFHTFLGAKSRHLGFM 82

Query: 62  YASLLQVQKSLSQKGI-VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI-NEVRR 119
              L Q+   +           Q    +   ++L        VT       +    EVRR
Sbjct: 83  LRGLRQLCHRMQHYSSNPLFLFQGEADETVPKFLRECGASLLVT------DFSPLREVRR 136

Query: 120 DK-LLEKRLQHRVICKSFDDSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLVQADLRSL 177
            K  + KR+   V     D   ++P     +        +     K L   LV      +
Sbjct: 137 CKEEICKRVSDSVAVHEVDAHNVVPLWVASDKLEYSARTIRAKITKRLSDYLVDFPDIEV 196

Query: 178 PVPAIRLTGPVTPSNIP-----RFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKV 227
             PA +       S               +  +  +   GE  A  +L      F  +++
Sbjct: 197 EPPAGKWVATENHSIDWDDLIADVLRRGAEVPEVDWCEPGEIAASEVLMGSKNGFLTKRL 256

Query: 228 YYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
             Y   R+ P      S LSPYL  G +S ++C    ++              ++L ELI
Sbjct: 257 KGYSLDRNNPCHPNALSGLSPYLHFGQISAQRCALEARKR----RNSHPQAIDAFLEELI 312

Query: 287 -WREFYRHLMAFYPSVCMGKPFIPWTEK--IEWNKDSHLLQAWKQ----GYTGFPIIDAA 339
             RE   +   + P     K    W +    E   D       K+      T  P+ +A+
Sbjct: 313 VRRELADNYCFYQPHYDSLKGAWAWAQNTLTEHATDKREHIYTKEQLEKAQTADPLWNAS 372

Query: 340 MRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
             ++   G MH  +RM  A       +       I         LDG   +   G  W+ 
Sbjct: 373 QLEMVHYGKMHGFMRMYWAKKILEWTRGPEEALEISLYLNDKYELDGRDPNGYVGCMWSI 432

Query: 397 STGNDS-------VPYFRIFNPTIQGKRFDPQG--TFIRHWLPELNN 434
              +D            R  N     ++FD      ++   + EL  
Sbjct: 433 CGVHDQGWKERPIFGKIRYMNYAGCKRKFDVDKYIAYVNKLVRELKK 479


>gi|92429536|gb|ABD93512.2| DNA photolyase protein [Coffea canephora]
          Length = 189

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 12/194 (6%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQ 67
           W RNDLR+ DN+ L +A + S   V+ V+   P  + +           ++ F+  S+  
Sbjct: 1   WFRNDLRVHDNECLNSANNES-MSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLLESVAD 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K+L  KG                 L           ++ +R+   +EV+ +  +E  L
Sbjct: 60  LRKTLQAKGSDLVVR----IGKPETVLVELAQAVGAEAVYAHREVSHDEVKAEDNIEAVL 115

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLT 185
           +   V  K F  S L     +     +M   Y  F++ +    V+  + +L  V  +   
Sbjct: 116 KEEGVEVKYFWGSTLYHIDDLPFKLTEMPTNYGGFKEKVQGLEVRKTIEALDQVKGLPAK 175

Query: 186 GPVTPSNIPRFFDY 199
           G V P  IP   D 
Sbjct: 176 GDVEPGEIPSLVDL 189


>gi|157123882|ref|XP_001653955.1| DNA photolyase [Aedes aegypti]
 gi|108882857|gb|EAT47082.1| DNA photolyase [Aedes aegypti]
          Length = 506

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 141/445 (31%), Gaps = 43/445 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN A   A   +    + + +      +    + R   F+   L +V K
Sbjct: 71  IYWMSRDARVQDNWAFLFAQKLALKNELPLHVCFSLVPKFLDATIRHYKFMLKGLEEVAK 130

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
                 I F        D     +  +     +  +  +       ++  + + K L   
Sbjct: 131 ECESLNINFHMLTGMAKDT----IPKFVKTHNIGAVVCDFSPLRVPMKWVEDVRKSLPAE 186

Query: 131 VICKSFDDSVLLPPG-----------SILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           V     D   ++P             +I N        Y      +I++  +A  ++  +
Sbjct: 187 VPLCQVDAHNIVPLWVTSEKQEYAARTIRNKVNNNLNTYLTQFPPVIKHPHKASFKADSI 246

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
             ++L   +         D+           G    + +L+ F ++++  +  +R+ P  
Sbjct: 247 DWVKLLDTIEVDRTVDEVDWAV--------PGYTGGIGVLQSFVEKRLRKFNAKRNDPTD 298

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              S LSP+   G +S ++C   +K+          +     +      + + +    Y 
Sbjct: 299 DALSNLSPWFHFGQISVQRCVLAVKKYGKGYSEGVAAFCEESIVRRELSDNFCYYNKNYD 358

Query: 300 SVCMGKPFIPWTEKI--EWNKDSHLLQAWK----QGYTGFPIIDAAMRQLNTIGWMHNRL 353
           ++   K    W +K   +  KD       +    Q  T   + ++A  Q+   G MH  L
Sbjct: 359 NL---KGAYDWAQKTLDDHRKDKRTYVYSRDQLEQARTHDDLWNSAQIQMVKEGKMHGFL 415

Query: 354 RMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------V 403
           RM  A       K                 LDG   +   G  W+ +  +D         
Sbjct: 416 RMYWAKKILEWTKTPEEALETAIYLNDRYQLDGRDPNGYVGCMWSIAGIHDQGWREREVF 475

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRHW 428
              R  N     ++FD    F+  +
Sbjct: 476 GKIRYMNYEGCKRKFDV-AAFVARY 499


>gi|269122091|ref|YP_003310268.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC
           33386]
 gi|268615969|gb|ACZ10337.1| DNA photolyase FAD-binding protein [Sebaldella termitidis ATCC
           33386]
          Length = 453

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 157/446 (35%), Gaps = 35/446 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W++  +R + N +L  A H ++     ++ +F    +      ++ R  +F++ SL  
Sbjct: 22  IYWMQRSIRSSYNHSLEYAIHLANDLKKNLLVIFCFDRKFSE---MNERSCYFLFESLKD 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            +K+L  +GI F     S     I  +  Y  +     +  +R Y     +  + + +++
Sbjct: 79  AEKNLKDRGIRFIVLDSSPL---ITKILEYSKRSVC--IITDRAYLKYLRKIREEVGEKV 133

Query: 128 QHRVI------CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             R+I          + + L    S      +++KV   +     +           +  
Sbjct: 134 SVRMIQIESDVVVPIEIASLKEEYSARTLRGKLHKVLDFYLNKDFEYTKYEMNYLDEIKT 193

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                 +         D   +  +  F  GE  A  IL  F  EK+  Y + R+ P ++ 
Sbjct: 194 DFDLEKIHEIIESLNIDKTVRKSN-YFTGGENTAKKILENFISEKLEGYSKFRNNPELEY 252

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYP 299
            S LSPYL  G +SP      + +   +     +      +     I   +Y      + 
Sbjct: 253 QSNLSPYLHFGNISPLFVAKEISKSEKNRESLEEFLEELIVRRELAINFIYYNQDYDKFQ 312

Query: 300 SVCMGKPFIPWTEK-IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           ++     +    +   +  +  + L+  ++  T     ++A +++   G MH  +RM  A
Sbjct: 313 NMTYLWAYETMNKHKNDQKEYVYSLEILEKSETHDEYWNSAQKEMMVTGKMHGYMRMYWA 372

Query: 359 SF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF------ 409
                  +     + I +       +DG   +   G  W     + +     IF      
Sbjct: 373 KKIIEWTEKFEEAYEIIKYLNNKYFIDGRDENGYAGIAWCFGKHDRAWNERNIFGKLRYM 432

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNV 435
           N     ++FD     I  ++ ++N +
Sbjct: 433 NSNGLKRKFD-----IEKYVEKINKL 453


>gi|254456085|ref|ZP_05069514.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083087|gb|EDZ60513.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 379

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 13/204 (6%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNR 262
           +F      AL  L  F +  +  Y + R+           S LSPY++ G++S  +  ++
Sbjct: 2   IFEASRAKALDKLNHFVESNLSQYSKLRNFDFGPDNRSNISCLSPYITHGIISELEVIDK 61

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSH 321
             ++F        +    ++ E++WR +++  +   P+V     F+     +    KD  
Sbjct: 62  SLKKF------SFTKNEKFIQEVLWRVYWKGWLELRPNVWSD--FLMELNNLRNEFKDKQ 113

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
                 +G T     +  + +L    ++HN  RM  AS  +  L + W++G E+FM  L 
Sbjct: 114 NYLDAIEGKTDLECFNQWVNELKENNYLHNHTRMWFASIWIFTLELPWQLGAEFFMKHLY 173

Query: 382 DGDLASNNGGWQWAASTGNDSVPY 405
           DGD ASN  GW+W A        Y
Sbjct: 174 DGDAASNTLGWRWVAGIQTQGKHY 197


>gi|126735413|ref|ZP_01751159.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. CCS2]
 gi|126715968|gb|EBA12833.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp. CCS2]
          Length = 386

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/261 (24%), Positives = 94/261 (36%), Gaps = 28/261 (10%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           MF       L  L  F       Y  +R+   +   S LSPY+   +++           
Sbjct: 1   MFEPTYTAGLERLAAFVPHAGRDYASKRNYDNLAHVSALSPYIRHRIITEEDVLKATLAR 60

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK--PFIPWTEKIEWNKD-SHLL 323
                      A  ++ E+ WR +++  +   PSV             +++         
Sbjct: 61  H------SPQTAEKFIQEVYWRTYWKGWLEMRPSVWAMYRSDLQAALNRVQTESGLRQEW 114

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +A  +G TG    D   +QL   G++HN  RM  AS  +  L + W +G ++FM  LLDG
Sbjct: 115 EAACKGDTGIDCFDHWAKQLADTGYLHNHARMWFASIWIFTLRLPWTLGADFFMRHLLDG 174

Query: 384 DLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQGTFIRHWLPELNNVPTQYIH 441
           D ASN   W+W          Y  R  N T   + RF P G         L         
Sbjct: 175 DAASNTLSWRWVGGLQTIGKTYLARPDNITKYTEGRFHPTG---------LATFAAPLDG 225

Query: 442 APHSWLDKNDLSLNYPLPIVD 462
           APH            PLPI D
Sbjct: 226 APHPARG--------PLPITD 238


>gi|156744165|ref|YP_001434294.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156235493|gb|ABU60276.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus
           castenholzii DSM 13941]
          Length = 270

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 91/218 (41%), Gaps = 14/218 (6%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            G + A   LR+    +   Y   R+  +    + LSPY+  GVLS  +  +        
Sbjct: 38  GGRREAETRLRRIDPRR---YAATRNYLSG-AVTHLSPYIRHGVLSLAEVRDAAL----- 88

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
             ++  + A   ++EL WR++++ L                T     +  + L     +G
Sbjct: 89  SRVRRSADAAKLVSELGWRDYWQRLYERLGDNVWRDQESYKTGYCAGDYAAELPDDIIEG 148

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG   IDA   +L   G++HN  RM  A+++V    + W+ G  +F+  LLDGD ASNN
Sbjct: 149 RTGLACIDAFSHELRATGYLHNHARMWLAAYVVHWRRIRWQAGARWFLEHLLDGDPASNN 208

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
             WQW AST +     F   N           G + R 
Sbjct: 209 LSWQWVASTFSHKPYIFNRENLERFT-----DGVYCRT 241


>gi|209965665|ref|YP_002298580.1| hypothetical protein RC1_2382 [Rhodospirillum centenum SW]
 gi|209959131|gb|ACI99767.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 484

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 85/224 (37%), Gaps = 15/224 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           FP      L  L  F       Y  +R+           S L PY+   +++  +    +
Sbjct: 66  FPPRRDAGLARLHAFLPRAGQRYAAERNHDRGPADRGNVSGLGPYVRHRLVTEAEVIRHV 125

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            +      +     A  ++ E  WR +++  +   P V           +   ++D  L 
Sbjct: 126 LD------VHSFGAAEKFIQEQFWRTYWKGWLELRPQVWRDWLAGVAEARRRLDRDPGLH 179

Query: 324 QAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
             +     G TG    DA   +L   G++HN  RM  AS  +  L + W +G E+F+  L
Sbjct: 180 DCYTDAVAGRTGIDGFDAWAAELRETGYLHNHARMWFASIWIFTLRLPWELGAEFFLRHL 239

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQG 422
           LDGD ASN   W+W          Y  R  N     + RFDP G
Sbjct: 240 LDGDPASNTLSWRWVGGLQTVGKTYLARRDNIRTYTEGRFDPVG 283


>gi|188586748|ref|YP_001918293.1| Deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351435|gb|ACB85705.1| Deoxyribodipyrimidine photo-lyase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 456

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 160/453 (35%), Gaps = 54/453 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++   + + +      +    S+R   F+   L  V +
Sbjct: 24  LYWMQKAQRTHYNHALEYAIEQANKLNLPLIVYFGLYEQFPYASSRHFQFMLQGLQDVAE 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+++ I     +      +IE        +  + +  ++ Y    ++ +K  ++ L H+
Sbjct: 84  NLAKRNIKMIIKRTFPPYGAIEL------AKDASMIVVDKGY----LKFEKDWKEILSHQ 133

Query: 131 VICKSFD---DSVL----------LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           + C       D+V+              ++    L+M  ++     +   N    ++ +L
Sbjct: 134 LSCPIHQIETDAVIPVNTASSKEEYAAYTLRKKLLKMLDIFLTPLISRNPNFNSFEITNL 193

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKV--YYYVEQR 234
                      + S I    D   +         GE  AL  L  F  +      Y++++
Sbjct: 194 EQYNDIDIYTKSASEILEELDIHREVQPVTDIKGGENQALEQLSGFLNQGKGLELYIQKK 253

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRH 293
           + P++Q TS+LSPYL  G +SP      + +   D   +       +L +LI  RE   +
Sbjct: 254 NDPSVQATSKLSPYLHFGQISPLFIALEVLKFTQDYNHE-------FLEQLIVRRELSLN 306

Query: 294 LMAFYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           L+    +     P   W        + +   + + L+  +   T     +AA ++L + G
Sbjct: 307 LIEKNINYLTLSPLPQWSIKTLNEHRNDPRNNFYTLEEIEAANTHDKYFNAAQKELMSRG 366

Query: 348 WMHNRLRMITASFLVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            +HN +RM     +++                    LDG   +      W     +    
Sbjct: 367 TIHNYIRMYWGKKIIEWSQTPEEAHNTLCHLNDKYALDGRDPNGYANILWCFGKHDRPFQ 426

Query: 405 YFRIF--------NPTIQGKRFDPQGTFIRHWL 429
             +IF        N   +  + D    ++  W+
Sbjct: 427 ERQIFGKVRYMGVNALKRNGKPD---QYVATWV 456


>gi|8778649|gb|AAF79657.1|AC025416_31 F5O11.9 [Arabidopsis thaliana]
          Length = 505

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 86/464 (18%), Positives = 153/464 (32%), Gaps = 56/464 (12%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
              +   + W+  D R+ DN AL  A    + ++A V  VF    +        ARQ  F
Sbjct: 24  DQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFL---DAKARQLGF 80

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L Q+   +    I F   Q     D+ E + ++  +   + L  +    + E+RR 
Sbjct: 81  MLKGLRQLHHQIDSLQIPFFLLQG----DAKETIPNFLTECGASHLVTD-FSPLREIRRC 135

Query: 121 K-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLP 178
           K  + KR    +     D   ++P  +  +      +        L+   L++      P
Sbjct: 136 KDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLEPP 195

Query: 179 VPAIRLTGPVTPSNIPRFFD----YPFQAIDPMFP-IGEQNALHIL----RKFCKEKVYY 229
                        +     D       +  +  +   GE   + +L      F  +++  
Sbjct: 196 KKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKN 255

Query: 230 YVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-W 287
           Y   R+ P      S LSPYL  G +S ++C    +     +         ++L ELI  
Sbjct: 256 YSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEAR----KVRSTSPQAVDTFLEELIVR 311

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMR 341
           RE   +   + P     K    W  K   +  S        L+  ++G T  P+ +A+  
Sbjct: 312 RELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPLWNASQL 371

Query: 342 QLNTIGWMHNRLRMITASF-------------LVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           ++   G MH  +R    SF               K       I         +DG   S 
Sbjct: 372 EMVYQGKMHGFMRQ-VKSFIWILTVLYNSNYEWTKGPEEALSISIYLNNKYEIDGRDPSG 430

Query: 389 NGGWQWAASTGNDS-------VPYFRIFNPTIQGKRFDPQGTFI 425
             G  W+    +D            R  N     ++F+   ++I
Sbjct: 431 YVGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFNVD-SYI 473


>gi|15678924|ref|NP_276041.1| DNA deoxyribodipyrimidine photolyase (photoreactivation)
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2507184|sp|P12769|PHR_METTH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=Photoreactivating enzyme
 gi|639674|dbj|BAA06411.1| photolyase [Methanothermobacter thermautotrophicus]
 gi|2622000|gb|AAB85402.1| DNA deoxyribodipyrimidine photolyase (photoreactivation)
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 445

 Score =  129 bits (325), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 154/441 (34%), Gaps = 43/441 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHFIYAS 64
           S  + W++  +R   N AL  A   +++    +I VF  T +       ++R   F+   
Sbjct: 20  SYVVYWMQASVRSHWNHALEYAIETANSLKKPLIVVFGLTDDF---PNANSRHYRFLIEG 76

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLL 123
           L  V+ +L ++GI     +    D     L  Y           +R Y +I +   D+  
Sbjct: 77  LRDVRSNLRERGIQLVVER----DSPPSVLLKYADDAA--AAVTDRGYLDIQKEWVDEAA 130

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAI 182
                  +     + +V++P  +  +        + P  ++ L + +V   +R+L + ++
Sbjct: 131 GAL---HIPLTQVESNVIVPVETASDKEEYSAGTFKPKIKRHLKRFMVPLRMRTLKMDSL 187

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
            L       +  R F  P      +F  G   AL I  +F +EK+  +   R+ P     
Sbjct: 188 DLEPGPEFEDAVRDFRAPEDLEPSVFRGGTSTALSIFSEFLREKLECFERYRNDPVKNCL 247

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S +SPYL  G +SP          ++ L          +L ELI R         Y    
Sbjct: 248 SNMSPYLHFGQISP---------LYLALRASEAGECPEFLEELIVRRELSMNFVHYSDSY 298

Query: 303 MGKPFIPWTEKI-------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                +P   +        +  +  + L+  +   T  P  +AA +++   G MH  +RM
Sbjct: 299 SSISCLPEWAQRTLMDHVADPREYEYSLRELESASTHDPYWNAAQQEMVITGKMHGYMRM 358

Query: 356 ITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDSV------PYF 406
                +++      R  +          +DG   +   G  W     + +          
Sbjct: 359 YWGKKILEWTDHPARAYDIALYLNDRYEIDGRDPNGFAGVAWCFGKHDRAWAEREIFGKV 418

Query: 407 RIFNPTIQGKRFDPQGTFIRH 427
           R  N     ++F     ++  
Sbjct: 419 RYMNDRGLKRKFRID-EYVDR 438


>gi|119094174|gb|ABL60996.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
           HF10_25F10]
          Length = 254

 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 91/224 (40%), Gaps = 12/224 (5%)

Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
           D    A+  +   G + A  +L    +     Y   R+       ++LSPY+  GVLS  
Sbjct: 12  DDAAPAVPDIAAGGRKAAEAVL---VRVDPRAYAASRNHLDG-AVTRLSPYIRHGVLSLD 67

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
           +  N      VD        A  ++ EL WR++++ +   +P           T      
Sbjct: 68  EVRNAALASVVD-----PKQAEKFIQELAWRDYWQRIYLEHPERIWTDVESYKTGFDAAE 122

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
            D+ L      G TG   ID  +  L   G++HN  RM  AS+ V    V W+ G  +F+
Sbjct: 123 YDAELPADIAAGETGIACIDQFIATLVETGYLHNHARMYLASYTVHWRRVSWQAGARFFL 182

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
             L+D D ASNN  WQW AST +       IFN     K   P 
Sbjct: 183 EHLVDADPASNNLSWQWIASTFS---NKPYIFNLENVAKYCGPD 223


>gi|307297559|ref|ZP_07577365.1| DNA photolyase FAD-binding [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916819|gb|EFN47201.1| DNA photolyase FAD-binding [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 449

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 158/459 (34%), Gaps = 51/459 (11%)

Query: 1   MKATTAMSVH----------LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ 50
           M+A  A  ++          L W++   R  +N AL  A   +    + + +        
Sbjct: 1   MRADRAHKLNKSNDRRGNFVLYWMQASQRTEENHALELAKQEAKELDVPLAVLFVLNANY 60

Query: 51  HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110
              + R   F++  L  V+  L ++GI F   +    D   +        +R   +  + 
Sbjct: 61  PSGNLRSFSFMFDGLRDVKSELEEQGIRFVIFKGDPVDIVPKV------SKRCALVVTDV 114

Query: 111 QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
            Y  +++   K + ++L+      S + +V++P   +   + +       FRK ++++  
Sbjct: 115 GYLRHQIDWRKRIAEKLEC--PFLSVESNVVVP---VRTASCKEEYSAATFRKKVMKHFA 169

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCK 224
           +       V                  D     +D        F  G++ A   L  F  
Sbjct: 170 EFVNDFEAVELRSRASLAEFEGATGIEDVDLSDLDQSVSVVSDFHGGQKEAKRRLEVFLS 229

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
           + +  + E+R+ P     S++SP+L  G +SP     R+ +           G  +++ E
Sbjct: 230 KNLDRFEEERNDPNSGCLSEMSPFLHFGHISPSYIARRVIDSC-------SKGKNAYIEE 282

Query: 285 L-IWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDSH----LLQAWKQGYTGFPIID 337
           L + RE   + + +       +    W +K   E  KD       L   + G T  P  +
Sbjct: 283 LVVRRELGVNFVFYNSKYDSFEALPQWAQKTLNEHRKDKRVRSFSLSELESGKTDDPYWN 342

Query: 338 AAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQW 394
           AA ++++  G MH  +RM           D                LDG   +   G  W
Sbjct: 343 AAQKEMSLTGKMHGYMRMYWGKKLLEWSSDPESAICSAIYLNDKYELDGRDPNGYAGILW 402

Query: 395 AASTGNDSV------PYFRIFNPTIQGKRFDPQGTFIRH 427
                + +          R  N     ++FD   ++++ 
Sbjct: 403 CFGKHDRAWSEREIYGKVRYMNSNGLKRKFDID-SYVKR 440


>gi|323455842|gb|EGB11710.1| hypothetical protein AURANDRAFT_6503 [Aureococcus anophagefferens]
          Length = 127

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/127 (43%), Positives = 74/127 (58%), Gaps = 2/127 (1%)

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           L+AW+ G TGFP++DAAMRQL   GWM N +R + ASFLV+ L +DWR GE +F   L+D
Sbjct: 2   LRAWQLGLTGFPLVDAAMRQLWVWGWMPNYVRHVVASFLVEHLHLDWRHGEAWFHDTLVD 61

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            D A N   WQ    +G D   +  + +P    K  DP+G ++R W PEL  +P  +IH 
Sbjct: 62  ADAAINAFMWQNGGRSGMDQWNF--VMHPVHAAKNCDPEGDYVRRWCPELAALPRDHIHQ 119

Query: 443 PHSWLDK 449
           P      
Sbjct: 120 PWRAPAS 126


>gi|219848494|ref|YP_002462927.1| DNA photolyase FAD-binding [Chloroflexus aggregans DSM 9485]
 gi|219542753|gb|ACL24491.1| DNA photolyase FAD-binding [Chloroflexus aggregans DSM 9485]
          Length = 271

 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/217 (30%), Positives = 90/217 (41%), Gaps = 10/217 (4%)

Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258
           Y   A       G   AL  LR F    V  Y   R+  A +  SQLSPYL  GVL+  +
Sbjct: 25  YQGPATPSPIRGGRWAALRRLRAF---DVRNYARTRNDVARRTVSQLSPYLRHGVLTLAE 81

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
             + +   F             ++NEL WR F++ + A           +   +      
Sbjct: 82  VRDSILNRF-----GHTPDTEKFVNELAWRAFWQIVYAHLGERIHHD--LEPAKHRSRVA 134

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
              L        TG   ID ++++L T G+MHN  RM  A++L   L VDWR G + F  
Sbjct: 135 RRSLPPEVLTATTGLVCIDESLQELYTTGYMHNHARMWVAAYLQHWLGVDWREGADLFYR 194

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
            LLDGD ASN+  WQW  ST +     F   N     
Sbjct: 195 HLLDGDPASNSLSWQWVGSTFSHKPYIFNRQNVERFS 231


>gi|302384123|ref|YP_003819946.1| DNA photolyase FAD-binding protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194751|gb|ADL02323.1| DNA photolyase FAD-binding protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 418

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 87/225 (38%), Gaps = 14/225 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           FP      L  L  F       Y   R+  A  G     S LSP+L   +L+ R+    +
Sbjct: 8   FPPTRAAGLQRLADFVPHAGEAYAMGRNTDAGPGGHLAVSGLSPWLRHRLLTEREVVAGV 67

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            E            A  ++ E++WR +++  +   P V     +    +    +     +
Sbjct: 68  LERH------DPRAAQRFIQEVLWRTYWKGWLQMNPEVWTR--YQAERDAPRASGLERAV 119

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
              + G TG    D   R+L   G++HN  RM  AS  +  L + W +G ++F+  LLDG
Sbjct: 120 AQAEAGATGIEGFDDWARELVRTGYLHNHARMWFASIWIFTLGLPWALGADFFLRHLLDG 179

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPT--IQGKRFDPQGTFIR 426
           D ASN   W+W A        Y             RF P+G   R
Sbjct: 180 DPASNTLSWRWVAGLQTVGKTYLATPENIQRFTNGRFKPRGLATR 224


>gi|221505029|gb|EEE30683.1| DNA photolyase, putative [Toxoplasma gondii VEG]
          Length = 631

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 161/457 (35%), Gaps = 43/457 (9%)

Query: 8   SVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
            V + +L+ D+R+ DN AL     A  + +  ++ + +  P    Q   + R   F    
Sbjct: 74  KVVICYLQRDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLAFQP--TRRHLSFFMGG 131

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ-----YEINEVRR 119
             +V+  L    I F+     +  D    LD      ++ ++F   Q      + N +R 
Sbjct: 132 AREVETELKSLNIGFEL-PIVSKKDPKGRLDEANK--KIEEVFDALQPALAVCDFNPLRL 188

Query: 120 DKLLEKRL-----QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
              + + L     +        D   ++P     +      +   P    L++       
Sbjct: 189 PTQVVEALTRVYAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKLMELVKEFATPFP 248

Query: 175 R----SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-YY 229
           +    ++P    +L        +      P + +D  +  G + AL +L  F   K    
Sbjct: 249 KVQRMTVPWTHTKLFPLDEDRILSELKPDPPEPLDS-WKPGTKAALELLHSFATPKNLAE 307

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNE-LIW 287
           Y + R+ P     S LSPY+  G +S ++C   + +       K  K G  S+++E ++ 
Sbjct: 308 YGKSRNDPVAGVQSDLSPYIHFGHISVQRCLLEVSKLKSTAADKTLKEGVMSFIDEVVVR 367

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMR 341
            +   + + F P     K    W ++       +  +  +   A + G T   + +AA  
Sbjct: 368 SQLSDNFVFFNPHYDDIKGAPLWAQQTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQL 427

Query: 342 QLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           QL   G MH  LRM  A       K      +I         LDG   +   G  W+   
Sbjct: 428 QLVRDGKMHGYLRMYWAKKILEWTKSPQEALKIAIALNDKYHLDGTDPNGVTGCMWSICG 487

Query: 399 GNDS-------VPYFRIFNPTIQGKRFDPQGTFIRHW 428
            +D            R  N     ++FD +  F+R +
Sbjct: 488 VHDQGFKERPVFGKIRYMNYPGCERKFDVKA-FVRKF 523


>gi|324506249|gb|ADY42672.1| Deoxyribodipyrimidine photo-lyase [Ascaris suum]
          Length = 549

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 88/457 (19%), Positives = 160/457 (35%), Gaps = 56/457 (12%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQSHFIY 62
             S  L  LR  LR   + A   A      S   +IA+ +  PE    H    ++  F+ 
Sbjct: 16  KGSYVLYILRC-LRTKYSAAFSFASERANKSQVPLIALHLYVPE----HHNVPQRV-FLL 69

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L ++++S+    +     + ++  D+++     C  +   ++  +  Y    +R D+ 
Sbjct: 70  EGLKELKESMGSLQVKLLCVKANDNKDALKIALQLC--EGACEVVLDAAY----LRGDRE 123

Query: 123 LEKRLQHRVICK-----SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
            E++L H +I +       + +V +P       A    +   P     ++ ++      +
Sbjct: 124 FEEQLNHMLIERCRKLTRIEGNVSVPINLSSKSAEWGARTLRPKIWQHLKAMLAEKWEDV 183

Query: 178 PVPAIRLTGPVTPSNI--PRFFDYPFQA-----IDPMFPIGEQNALHILRKFCKEKVYYY 230
           P+        +   NI      +   +A      D  F  GE  A  +L  F   K+  Y
Sbjct: 184 PMIPCGNWAKLIKGNIPEMNLEEELKRAQSDCKSDSGFVGGETVAQRMLSFFISNKLVSY 243

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
              R+IP  +  S LSPYL  G++S  +   R+K+        PK    S++ EL+ R  
Sbjct: 244 HPGRNIPGSKYQSLLSPYLHFGMISAIEIIKRVKDAKA-----PKHAIDSFIEELLVRRD 298

Query: 291 YRHLMAFY-----------PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
             H   +Y           P            +K ++   S  L   +   T  P  +AA
Sbjct: 299 LSHNFVYYAKDNYDSLDCLPDWAQKTLKQHKNDKRDYIYTSEEL---EDARTHDPYWNAA 355

Query: 340 MRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
             ++     MH  +RM           D    +R   E      LDG   +   G  W  
Sbjct: 356 QLEMVHTNKMHGYMRMYWGKKVIEWTPDYETAYRFLIEQNDKHELDGRDPNGYTGVMWVF 415

Query: 397 STGNDSV------PYFRIFNPTIQGKRFDPQ-GTFIR 426
              + +          R  N     +++    G ++R
Sbjct: 416 GMHDRAHAERAVFGKLRYMNAEGLYRKYKQTIGEYVR 452


>gi|221481951|gb|EEE20317.1| DNA photolyase, putative [Toxoplasma gondii GT1]
          Length = 631

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 161/457 (35%), Gaps = 43/457 (9%)

Query: 8   SVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
            V + +L+ D+R+ DN AL     A  + +  ++ + +  P    Q   + R   F    
Sbjct: 74  KVVICYLQRDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLAFQP--TRRHLSFFMGG 131

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ-----YEINEVRR 119
             +V+  L    I F+     +  D    LD      ++ ++F   Q      + N +R 
Sbjct: 132 AREVETELKSLNIGFEL-PIVSKKDPKGRLDEANK--KIEEVFDALQPALAVCDFNPLRL 188

Query: 120 DKLLEKRL-----QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
              + + L     +        D   ++P     +      +   P    L++       
Sbjct: 189 PTQVVEALTRVYAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKLMELVKEFATPFP 248

Query: 175 R----SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-YY 229
           +    ++P    +L        +      P + +D  +  G + AL +L  F   K    
Sbjct: 249 KVQRMTVPWTHTKLFPLDEDRILSELKPDPPEPLDS-WKPGTKAALELLHSFATPKNLAE 307

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNE-LIW 287
           Y + R+ P     S LSPY+  G +S ++C   + +       K  K G  S+++E ++ 
Sbjct: 308 YGKSRNDPVAGVQSDLSPYIHFGHISVQRCLLEVSKLKSTAADKTLKEGVMSFIDEVVVR 367

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMR 341
            +   + + F P     K    W ++       +  +  +   A + G T   + +AA  
Sbjct: 368 SQLSDNFVFFNPHYDDIKGAPLWAQQTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQL 427

Query: 342 QLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           QL   G MH  LRM  A       K      +I         LDG   +   G  W+   
Sbjct: 428 QLVRDGKMHGYLRMYWAKKILEWTKSPQEALKIAIALNDKYHLDGTDPNGVTGCMWSICG 487

Query: 399 GNDS-------VPYFRIFNPTIQGKRFDPQGTFIRHW 428
            +D            R  N     ++FD +  F+R +
Sbjct: 488 VHDQGFKERPVFGKIRYMNYPGCERKFDVKA-FVRKF 523


>gi|115379247|ref|ZP_01466362.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
 gi|310819481|ref|YP_003951839.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
 gi|115363746|gb|EAU62866.1| deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
 gi|309392553|gb|ADO70012.1| Deoxyribodipyrimidine photo-lyase [Stigmatella aurantiaca DW4/3-1]
          Length = 469

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 142/426 (33%), Gaps = 34/426 (7%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A       L W++   R   N AL  A   ++A  + + +           + R   F+ 
Sbjct: 18  AAKGGDYVLYWMQQSARAEHNPALEYAIQQANAAKLPLLVGYGLMDGYPEANVRHYRFLL 77

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L   Q++L+ + I F   +    +       +  L ++   +  +R Y    +R  K 
Sbjct: 78  EGLQDCQRTLAHRKIPFALQRGPPDEV------ALKLSRQAALVVCDRGY----LRHQKQ 127

Query: 123 LEKRLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTPFRKA-LIQNLVQADLRSLPV 179
             + L  +  C     +  V++P  +    A    +   P       + LV+     L V
Sbjct: 128 WRQTLAAKASCPVVQVEADVVVPVEAASGKAEYAARTLRPKIHRLWEEYLVRPTSTPLEV 187

Query: 180 PAIRL------TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +++L         V         D     +   F  G   A  +LR F    +  Y E 
Sbjct: 188 DSLKLGVKGLNLDDVGAVLDRMALDRSVPPVHHFFRGGTSEAKRVLRGFVTRHLPEYQEN 247

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYR 292
           R  P     S +S YL  G +SP       +E       +      ++L ELI  RE  +
Sbjct: 248 RPHPETDHVSHMSKYLHFGQISPVVVALAAREARALRPQRD-----TFLEELIVRRELAQ 302

Query: 293 HLMAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWK----QGYTGFPIIDAAMRQLNTI 346
           +   + P          W  K       D       K    Q  T  P  +AAMR++   
Sbjct: 303 NFAEYTPQYDDYTSLPAWARKTLAAHAGDKRPFHYTKAQLEQARTHDPYWNAAMREMRYT 362

Query: 347 GWMHNRLRMITASFLVKDLLVD---WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV 403
           G+MHN +RM     +++        +R       +  LDG  A++     W     +   
Sbjct: 363 GYMHNAMRMYWGKKILEWGRTPEEAYRTALTLNNTYFLDGRDANSFTNIGWVFGLHDRPW 422

Query: 404 PYFRIF 409
               I+
Sbjct: 423 GRRAIY 428


>gi|237837047|ref|XP_002367821.1| DNA photolyase, putative [Toxoplasma gondii ME49]
 gi|211965485|gb|EEB00681.1| DNA photolyase, putative [Toxoplasma gondii ME49]
          Length = 631

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 161/457 (35%), Gaps = 43/457 (9%)

Query: 8   SVHLVWLRNDLRITDNKAL---YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
            V + +L+ D+R+ DN AL     A  + +  ++ + +  P    Q   + R   F    
Sbjct: 74  KVVICYLQRDMRVQDNWALLLAQEAARSLNKPLVVIHLLVPGLAFQP--TRRHLSFFMGG 131

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ-----YEINEVRR 119
             +V+  L    I F+     +  D    LD      ++ ++F   Q      + N +R 
Sbjct: 132 AREVETELKSLNIGFEL-PIVSKKDPKGRLDEANK--KIEEVFDALQPALAVCDFNPLRL 188

Query: 120 DKLLEKRL-----QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
              + + L     +        D   ++P     +      +   P    L++       
Sbjct: 189 PTQVVEALTRVYAECLSPLYQVDTHGVVPCWVASDKLETAARTLRPKLMELVKEFATPFP 248

Query: 175 R----SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV-YY 229
           +    ++P    +L        +      P + +D  +  G + AL +L  F   K    
Sbjct: 249 KVQRMTVPWTHTKLFPLDEDRILSELKPDPPEPLDS-WKPGTKAALELLHSFATPKNLAE 307

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNE-LIW 287
           Y + R+ P     S LSPY+  G +S ++C   + +       K  K G  S+++E ++ 
Sbjct: 308 YGKSRNDPLAGVQSDLSPYIHFGHISVQRCLLEVSKLKSTAADKTLKEGVMSFIDEVVVR 367

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMR 341
            +   + + F P     K    W ++       +  +  +   A + G T   + +AA  
Sbjct: 368 SQLSDNFVFFNPHYDDIKGAPLWAQQTLNIHAKDKREPHYGFAALEAGKTYDELWNAAQL 427

Query: 342 QLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           QL   G MH  LRM  A       K      +I         LDG   +   G  W+   
Sbjct: 428 QLVRDGKMHGYLRMYWAKKILEWTKSPQEALKIAIALNDKYHLDGTDPNGVTGCMWSICG 487

Query: 399 GNDS-------VPYFRIFNPTIQGKRFDPQGTFIRHW 428
            +D            R  N     ++FD +  F+R +
Sbjct: 488 VHDQGFKERPVFGKIRYMNYPGCERKFDVKA-FVRKF 523


>gi|254486393|ref|ZP_05099598.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp.
           GAI101]
 gi|214043262|gb|EEB83900.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp.
           GAI101]
          Length = 403

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 13/205 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRL 263
           F       L  LR F  +   +Y E+R+           S LSPYL  G++S  +    +
Sbjct: 8   FEPTRTAGLERLRNFAPDAGRHYGERRNYLGTAKNPGAVSALSPYLRTGLVSQSEVLRTV 67

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK--PFIPWTEKIEWNKD-S 320
            ++           A  ++ E++WR +++  +A  PSV              ++      
Sbjct: 68  LDQH------SAKDADRYIAEVLWRSYWQGWLALRPSVWDAYQADLKRLHNAVQTQSGLR 121

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
              +    G TG    DA   +L   G++HN  RM  AS  V  L + W++G ++F+  L
Sbjct: 122 QRWENACLGQTGIAPFDAWANELAHSGYLHNHARMWFASIWVHTLELPWQLGADFFLRHL 181

Query: 381 LDGDLASNNGGWQWAASTGNDSVPY 405
           LDG  ASN  GW+W A       PY
Sbjct: 182 LDGCPASNTLGWKWVAGIQTIGKPY 206


>gi|33415319|gb|AAQ18175.1| type II CPD DNA photolyase [Pityrogramma austroamericana]
          Length = 546

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 81/502 (16%), Positives = 158/502 (31%), Gaps = 68/502 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              + W+  D R  DN AL  A   +  +   + +A           AR   F+   L  
Sbjct: 39  GPVVYWMSRDQRSRDNWALLYAAQCAQQQGGPLCVAFNLVDSFLHAEARHFGFMLRGLRV 98

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V  +LS  GI F   +      + E + ++  +   + L  +           + + K +
Sbjct: 99  VHHNLSSLGIPFFLLRGK----AEENIPAFVERCGASILVMDFSPLRIGRVWREGVCKAV 154

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAIRLTG 186
              V     D   ++P     +      +      ++ L + LV+      P+    L  
Sbjct: 155 PSSVSVFEVDAHNVVPVWVASDKQEYAARTIRGKIQRHLPEYLVEYPPLVAPIHTWTLEK 214

Query: 187 PVTPSNIPRFFDY---PFQAIDPMFPIG-EQNALHIL----RKFCKEKVYYYVEQRDIPA 238
           P          +      + ++  +    E  A+ +L    + F   ++  Y + R+ P+
Sbjct: 215 PANIDWDLLIDEVAKKGAEGLEVKWCESREDAAMELLLGKKKGFLTTRIRNYADDRNDPS 274

Query: 239 IQ-GTSQLSPYLSIGV------------------------------LSPRQCWNRLKEEF 267
              G S LSPYL  G                               LSP   + ++  + 
Sbjct: 275 KPAGLSGLSPYLHYGQVLKKKGFLTTRIRNYADDRNDPSKPAGLSGLSPYLHYGQVLAQR 334

Query: 268 -----VDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKPFIPWTE------KIE 315
                  L         ++L EL I RE   +   + P+    +    W          +
Sbjct: 335 CALEGRKLRRSHTKAIDTFLEELVIRRELADNFCYYQPNYDSLQGAYEWARSTLLAHASD 394

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE-- 373
             +  +  +  ++G T   + +A+  ++  +G MH  +RM  A  +++            
Sbjct: 395 KREHLYTQEELEKGKTHDELWNASQLEMVHLGKMHGFMRMYWAKKILEWTGGPEEALAVA 454

Query: 374 -EYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQGKRFDPQG--T 423
                   LDG   +   G  W+    +D            R  N     ++F+  G   
Sbjct: 455 IYLNDKYELDGRDPNGYVGCMWSICGIHDQGWQERPVFGKIRYMNYNGCKRKFNVDGYIQ 514

Query: 424 FIRHWLPELNNVPTQYIHAPHS 445
           +++  + EL          P S
Sbjct: 515 YVKRMVAELKRAAKDPAKIPPS 536


>gi|312373837|gb|EFR21518.1| hypothetical protein AND_16935 [Anopheles darlingi]
          Length = 529

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 146/444 (32%), Gaps = 44/444 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  D+R+ DN A   A   +    + + +      R    + R   F+   L +V K
Sbjct: 93  LYWMSRDVRVQDNWAFLFAQKLALKNELPLHVCFNLVPRFLDATIRHFKFMLNGLEEVAK 152

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              +  I F   + +   +    + ++  + R+  +  +       ++  + + K L   
Sbjct: 153 ECEKLNIHFHLLRGNAGQN----VPAFVKKHRIGGVVCDFSPLRVPMQWVEDVRKALPME 208

Query: 131 VICKSFDDSVLLPPG-----------SILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           V     D   ++P             +I N        +      +I++  +A  ++ P+
Sbjct: 209 VPLCQVDAHNIVPVWVTSEKLEYAARTIRNKVNNNLGTFLTPFPPVIKHPHKASFQAEPI 268

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
              ++   +          +           G    +  L+ F ++++  +  +R+ P  
Sbjct: 269 DWPQVIDSLEVDRTVDEVKWAT--------PGYTGGVATLQSFVEKRLGKFNAKRNDPTE 320

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY 298
              S LSP+   G ++ ++    +K        +      S+  E ++ RE   +   + 
Sbjct: 321 NALSNLSPWFHFGQIAVQRAVLAVKSH----GKRHTESVASFCEEAIVRRELADNFCFYN 376

Query: 299 PSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNR 352
            +    K    W  K   +  KD  +    ++      T   + ++A  Q+   G MH  
Sbjct: 377 KNYDNLKGAYDWARKTLDDHRKDRRVYCYTREELETAKTHDDLWNSAQLQMVKEGKMHGF 436

Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS------- 402
           LRM  A       K                 LDG   +   G  W+ +  +D        
Sbjct: 437 LRMYWAKKILEWTKSPEEALETAIYLNDRFNLDGRDPNGYVGCMWSIAGIHDQGWKEREI 496

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIR 426
               R  N     ++FD     +R
Sbjct: 497 FGKIRYMNYEGCKRKFDVNAFVVR 520


>gi|213650723|ref|ZP_03380776.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 158

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/158 (39%), Positives = 91/158 (57%), Gaps = 2/158 (1%)

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +EK L   VIC+ FDDSV+L PG+++    +MYKV+TPF+ A ++ L +     +P P I
Sbjct: 1   MEKTLPS-VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKI 59

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
           R++G ++    P   +YP QA D  +FP+ E   +  LR FC +    Y  +RD PA+ G
Sbjct: 60  RVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFCSQGADEYASRRDFPAVDG 119

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           TS+LS  L+ G LSPRQC +RL  E    L       +
Sbjct: 120 TSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSVW 157


>gi|167837240|ref|ZP_02464123.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis
           MSMB43]
          Length = 148

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 84/163 (51%), Gaps = 18/163 (11%)

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
                     ++   ++L+EL WREF       +P +   +      + + W  D   L 
Sbjct: 4   RRGRAHRAATQADLDTFLSELGWREFCWAQPYRFPDLPR-RSLRHTLDGMPWRDDPAALA 62

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           AW++G TG+P +DA MR+L   G MHNR R +  SFLVK LL+DWR+G+ +F   L+D  
Sbjct: 63  AWRRGATGYPFVDAGMRELRATGGMHNRARTVCTSFLVKHLLIDWRVGDAWFRDTLVDA- 121

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
                           D+ PYFRIFNP  QG+RFDP G ++R 
Sbjct: 122 ----------------DAAPYFRIFNPVAQGRRFDPDGAYVRR 148


>gi|156555630|ref|XP_001603285.1| PREDICTED: similar to DNA photolyase [Nasonia vitripennis]
          Length = 504

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 146/438 (33%), Gaps = 29/438 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN A+  A   +    + + +      +    + R   F+  +L +V+K
Sbjct: 58  VYWMFRDARVHDNWAMLFAQKIALKNKVPLHVCFCILPKFLDATIRHYKFLLEALEEVEK 117

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT-------KLFYNRQYEINEVRRDKLL 123
              +  I F           I +++ Y +   +         LF+    +    ++  L 
Sbjct: 118 DCKELNINFHLLHGEPNTAIINFVEKYKMGAVIADFFPLRLPLFWLEDIKKKLPKKIPLC 177

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
           +    + V C    + +     +I N        +      +I++   +D +      I 
Sbjct: 178 QVDAHNIVPCWVASEKLEYAARTIRNKINSKLDEFLTEFPPVIKHPHTSDQK---FDKIN 234

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
               +    + +  D    A       G +  +  L KF K ++  Y E+R+ P     S
Sbjct: 235 WDTALDDVLVDKSVDKITWA-----KAGYKGGIAELDKFLKIRLRIYDEKRNNPIFNALS 289

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM 303
            LSP+   G++S ++C    K+         ++     +      + +      Y S+  
Sbjct: 290 NLSPWFHFGMISVQRCILEAKKYKSQYNKSVEAFMEEAIVRRELSDNFCFYNEHYDSLKG 349

Query: 304 GKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              +   T     N        L   + G T   + +AA  QL   G +H  LRM  A  
Sbjct: 350 AYDWARETLNQHRNDKRDYIYTLNELENGLTHDDLWNAAEIQLVKEGKIHGFLRMYWAKK 409

Query: 361 LVKDLLVD---WRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFN 410
           +++         +          +DG   +   G  W+    +D            R  N
Sbjct: 410 ILEWTETPDDALKWSIYLNDKYSMDGRDPNGYVGCMWSICGVHDQGWRERPVFGKIRYMN 469

Query: 411 PTIQGKRFDPQGTFIRHW 428
                ++FD Q  F+  +
Sbjct: 470 YKGCERKFDVQA-FVMKY 486


>gi|163840007|ref|YP_001624412.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
 gi|162953483|gb|ABY22998.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
          Length = 230

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 16/216 (7%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VWLR++LR+TDN AL  AC      V  +++          +      +++ SL  + 
Sbjct: 19  SMVWLRDNLRLTDNPALAKACATGPTAV--LYVLDEVSEGIRPLGGATRWWLHHSLQNLA 76

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-Q 128
             +++ G      +     ++ E +     +     +F+NR+Y   E   D  L+  L +
Sbjct: 77  AEIAELGGSLILRR----GNAAEIVPEVAQKTGAEAVFWNRRYGGAERAIDSELKSALTK 132

Query: 129 HRVICKSFDDSVLLPPGSILNHALQM------YKVYTPFRKALIQNLVQADLRSLPVPAI 182
                +SF  ++L  P +I             YKV+TPF +A  ++       +      
Sbjct: 133 ADFTVQSFQANLLFEPWTIQPKGAGPAESSAHYKVFTPFWRACQESAEPRQPLTRIESFA 192

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPM---FPIGEQNA 215
            LT P    +              +   +  GE  A
Sbjct: 193 GLTAPSDVLDDWGLLPSKPDWSHGLAAEWTPGESGA 228


>gi|320102681|ref|YP_004178272.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
 gi|319749963|gb|ADV61723.1| DNA photolyase FAD-binding protein [Isosphaera pallida ATCC 43644]
          Length = 456

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 94/226 (41%), Gaps = 20/226 (8%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            G   AL  L+         Y   R+       ++LSPYL  GVL+  +  N   +    
Sbjct: 47  GGRAAALEALQGI---DPPRYERTRNYLDG-AVTRLSPYLRHGVLTLAEVRNHALK---- 98

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
            L+K    A  ++NEL WR++++ +                T        + L Q   +G
Sbjct: 99  -LVKHPVEAAKFINELGWRDYWQRVYERLGDGVWRDREPYKTGYSARRYAAELPQEIAEG 157

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG   +D   R+L   G++HN  RM  A+++V    V W+ G  +F+  LLDGD ASNN
Sbjct: 158 QTGMACMDEFARELRDTGYLHNHARMWLAAYVVHWRQVRWQAGATWFLEHLLDGDPASNN 217

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQG-----------KRFDPQGTF 424
             WQW AST +     F   N                 R D +G++
Sbjct: 218 LSWQWVASTFSHKPYVFNRENLEKYTGGRYCRSCPLKGRCDLEGSY 263


>gi|81157959|dbj|BAE48230.1| CPD photolyase [Chlorella pyrenoidosa]
          Length = 448

 Score =  127 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 140/438 (31%), Gaps = 30/438 (6%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W+  D R+ DN AL  A   +  + + V +A        G  ARQ  F+   L  +Q  L
Sbjct: 1   WMSRDQRVRDNWALIYAAQAAAKRGVPVAVAFSLVTEFLGAGARQFGFMVRGLQLIQPKL 60

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
               I F   +     D  E +         + L     Y    + R        Q  V 
Sbjct: 61  EALNIPFFLLKG----DPSETIPKLVQDTGASLLVT--DYAPLRLGRQWRQAVAEQLEVP 114

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKA----LIQNLVQADLRSLPVPAIRLTGPV 188
               D   ++P     +      +   P   +     ++   +   ++     ++     
Sbjct: 115 FHEVDAHNVVPVWVASDKREYAARTIRPKIHSKLPEFLKEYPELPQQATWAHEVKPEAVD 174

Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHIL---RKFC-KEKVYYYVEQRDIPAI-QGT 242
             + I    +      +  +   GE  A+  L   + F  K ++  Y  QR+ P +    
Sbjct: 175 WEALIAEVLERGKAVPEVDWCKPGEDAAMEALAGGKGFLSKARLSKYDAQRNDPTVADAL 234

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL  G L+P++      +         +      +      + Y H +  Y S+ 
Sbjct: 235 SNLSPYLHFGHLAPQRAAIEAAKHKSTHKASVEGFLEELVVRRELSDNYCHYVENYDSLD 294

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               +   T     N     +   +Q   G T   + +AA  ++   G MH  +RM  A 
Sbjct: 295 AAYDWARQTLNDHRNDKREHVYTKEQFEKGATHDKLWNAAQLEMVHCGKMHGFMRMYWAK 354

Query: 360 FLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIF 409
            +++         E          LDG   +   G  W+ +  +D            R  
Sbjct: 355 KILEWTASPEEALEIAIYLNDKYELDGRDPNGYVGCMWSIAGIHDQGWAERAVFGKIRYM 414

Query: 410 NPTIQGKRFDPQGTFIRH 427
           N     ++FD    ++  
Sbjct: 415 NYAGCKRKFDVD-KYVAR 431


>gi|148654199|ref|YP_001274404.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus sp.
           RS-1]
 gi|148566309|gb|ABQ88454.1| Deoxyribodipyrimidine photolyase-like protein [Roseiflexus sp.
           RS-1]
          Length = 270

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 96/239 (40%), Gaps = 19/239 (7%)

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
                G Q A   L++    +   Y   R+       + LSPY+  GVLS  +  +    
Sbjct: 34  SAIRGGRQEAEVRLQRIDPRR---YAATRNYLNG-AVTHLSPYIRYGVLSLAEVRDAAL- 88

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCM--GKPFIPWTEKIEWNKDSHLL 323
                 ++  + A   ++EL WR++++ L            +P+       E    + L 
Sbjct: 89  ----SRVRRPADAAKLVSELGWRDYWQRLYERLGDDVWRDQEPYKTGYRADE--YAAELP 142

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
               +G TG   +DA  R L + G++HN  RM  AS++V    V W+ G  +F+  LLDG
Sbjct: 143 DDIIEGRTGLACMDAFSRDLRSTGYLHNHARMWLASYVVHWRRVAWQAGARWFLEHLLDG 202

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
           D ASNN  WQW AST +     F   N           G + R   P       +  H 
Sbjct: 203 DPASNNLSWQWVASTFSHKPYIFNRENLERFT-----DGVYCRT-CPLYGRCDFEGTHE 255


>gi|92429534|gb|ABD93511.2| DNA photolyase protein [Solanum tuberosum]
          Length = 189

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 12/194 (6%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQ 67
           W RNDLR+ DN+ L AA HN    V+AV+   P  + +           ++ F+  S+  
Sbjct: 1   WFRNDLRVHDNECLNAA-HNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVAD 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K+L  +G                 L           ++ +R+   +EV+ +  ++  +
Sbjct: 60  LRKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVM 115

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLT 185
           +   +  K F  S L     +     QM   Y  FR+ +    V+  + +L  +  +   
Sbjct: 116 KDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLKGLPAR 175

Query: 186 GPVTPSNIPRFFDY 199
           G V P  IP   D 
Sbjct: 176 GDVEPGEIPSLVDL 189


>gi|255607778|ref|XP_002538784.1| DNA photolyase, putative [Ricinus communis]
 gi|223510429|gb|EEF23599.1| DNA photolyase, putative [Ricinus communis]
          Length = 351

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/213 (30%), Positives = 93/213 (43%), Gaps = 15/213 (7%)

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
            + P +  G  +AL  L          Y   R+       + LSPYL  G LS       
Sbjct: 42  DLSPAWQGGRASALARL---STVDAEDYARSRNQL-TGAVTGLSPYLRHGCLS------- 90

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           L E   D+  +    A     EL +R+++R +   +    M     P         D  +
Sbjct: 91  LPETMADVGARFGKHAHKLAAELSYRDYFRQVWYRFGEAIM----QPMESPKVGLGDRPM 146

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
                QG+TG   +D  +RQL   G++HN  RM  A+++V  L VDWR   ++F +QLLD
Sbjct: 147 PDFIAQGFTGLVCMDEIVRQLQQHGYVHNHARMWFAAYVVHWLKVDWRQAADWFETQLLD 206

Query: 383 GDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           GD ASN+  WQW AS+ ++    F   N    G
Sbjct: 207 GDTASNHLSWQWIASSFSNKPYLFNKENLIKFG 239


>gi|87300685|ref|ZP_01083527.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           5701]
 gi|87284556|gb|EAQ76508.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           5701]
          Length = 299

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 88/206 (42%), Gaps = 7/206 (3%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            G + AL  L          Y   R+       S LSPY+  GV+S  Q  + +++    
Sbjct: 65  GGSKPALAALEAL---DPVRYAASRNHLDG-AVSGLSPYIRHGVVSLAQVRDLVQQRMAG 120

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
               P+  +   L EL WR++++ L                T   E      L     +G
Sbjct: 121 ---GPEPVSEKLLQELAWRDYWQRLWLRLGDGLWENLEPLKTGHPEAAYAPELPGDIDEG 177

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG   IDA  RQL+  GW+HN  RM  A+++V    V W+ G  +F+  LLDGD ASNN
Sbjct: 178 RTGLACIDAFARQLSDTGWLHNHARMWLAAYVVHWRRVRWQAGAHWFLRHLLDGDPASNN 237

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQG 415
             WQW AS+ +     F   N    G
Sbjct: 238 LSWQWVASSFSAKPYLFNRANLERFG 263


>gi|220931344|ref|YP_002508252.1| Deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168]
 gi|219992654|gb|ACL69257.1| Deoxyribodipyrimidine photo-lyase [Halothermothrix orenii H 168]
          Length = 466

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 79/428 (18%), Positives = 141/428 (32%), Gaps = 47/428 (10%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W++   R   N AL  A    + S+  ++  F            + R   F+   L +
Sbjct: 23  LYWMQASQRTEYNHALEYAIIEANKSNKPLLVYFGIDTSFPEA---NRRHYQFMLEGLQE 79

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+KSL  +GI           D           +  + L  +R Y    ++ ++     +
Sbjct: 80  VKKSLYNRGIKMIIESVPPDKDI------LKFAEYASLLVVDRGY----LKIERTWRNNV 129

Query: 128 QHRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             ++ C     + +V++P   +   + +        RK L + L +  L  L    IR++
Sbjct: 130 SQQIDCPLIQVESNVIVP---VEVASSKEEYAAYTIRKKLYRKLPEF-LHPLHTRTIRVS 185

Query: 186 GPVTPSNIPRFFDYPFQAIDP---------------MFPIGEQNALHILRKFCKEKVYYY 230
                 +   + D P   +                 ++  G   AL +   F   K+  Y
Sbjct: 186 SLDLKLSFINYKDIPLDNVTLCLDRLKVDNTVPEVNLYRGGTTRALALYNDFLHNKIKDY 245

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
            E R+ P     S +SPYL  G +SP     +    +       K     +   +I RE 
Sbjct: 246 HEYRNDPVKNWISNMSPYLHFGQVSPLHLIIK-GNNYCKKHEIDKGFKEFFEELVIRREL 304

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAW----KQGYTGFPIIDAAMRQLN 344
             + + + P     K    W +K   E   D+          +   T  P  +AA ++L 
Sbjct: 305 SFNFVYYNPDYDSIKSLPDWAKKTLKEHENDTREFSYSLQELEDAKTHDPYWNAAQKELL 364

Query: 345 TIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
             G +H  +RM              + ++          LDG   +   G  W     + 
Sbjct: 365 LTGKIHGYMRMYWGKKILEWTSSPDLAYKYALYLNNKYALDGRDPNGFAGVAWCFGKHDR 424

Query: 402 SVPYFRIF 409
             P   IF
Sbjct: 425 PWPGCNIF 432


>gi|304391892|ref|ZP_07373834.1| deoxyribodipyrimidine photo-lyase family protein [Ahrensia sp.
           R2A130]
 gi|303296121|gb|EFL90479.1| deoxyribodipyrimidine photo-lyase family protein [Ahrensia sp.
           R2A130]
          Length = 408

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 88/224 (39%), Gaps = 20/224 (8%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRL 263
           FP   QNAL     F  E    Y   R+I          S+LSPY+       R+     
Sbjct: 7   FPATRQNALKQAENFAPEMGSNYSSNRNIDRGLEGDSTVSKLSPYIR------RRLMTEQ 60

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS--- 320
           +   + L       +  ++ E++WR +++  +   P+V          E+   + ++   
Sbjct: 61  ELALLALETHGAKASGKFVQEIVWRTYWKGWLEHRPTVWNDYLQDVADERDRLSSNTGIH 120

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
           H  Q   +G TG    D   ++L    ++HN  RM  AS  V  L + W +G E+F   L
Sbjct: 121 HAYQQAIEGRTGIECFDVWAQELVETNYLHNHARMSFASIWVHTLRLPWSLGAEFFFHHL 180

Query: 381 LDGDLASNNGGWQWAASTGN-------DSVPYFRIFNPTIQGKR 417
           LDGD ASN   W+W A           D     R  N     KR
Sbjct: 181 LDGDAASNTLSWRWVAGAHTAGKTYLADPAIINRCSNGRFSPKR 224


>gi|316975640|gb|EFV59048.1| deoxyribodipyrimidine photolyase [Trichinella spiralis]
          Length = 515

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 150/443 (33%), Gaps = 30/443 (6%)

Query: 11  LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIA--TPEQWRQHGISARQSHFIYASL 65
           L W++   R+  N AL  AC         V+A F+             + R+  F+   L
Sbjct: 39  LYWVQTSPRVKFNVALELACQKANEHQVPVLACFVFPTDKRLDNFPPETERRCVFMLDGL 98

Query: 66  LQVQKSLS-QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-----RR 119
              +K L  ++ I          +  I  L   C +  V   +   Q + +EV      R
Sbjct: 99  RDFEKRLKKERNIDLVVLYGK-CEILIAKLAENCCEVVVDAGYMRYQNKYDEVNNNIECR 157

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
              +E  +   V   S  +       +I     +  K Y    + ++       L S  +
Sbjct: 158 FTKVETNVVVPVELVSEKEE--FAAYTIRPKIWKYAKQYLVEPECIMVIAKNKPLFSDNL 215

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
           P I L+            D   + +      G   A+ +L  F  +K+  Y + R+IP +
Sbjct: 216 PLIDLSQSDNVILAKLNADTTVKKV-ANIHGGHSEAVKLLDNFVSKKLPNYDKLRNIPGL 274

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
            G S LSPY++ G +S  +   ++     +  +K        +   +   F  +    Y 
Sbjct: 275 DGQSGLSPYINFGHISTVEIILKVNASKANKSVKDAFVEQLLVRRELSINFVHYNSENYD 334

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           S+     +   T K++       +   +Q   G T     +A   +L   G M+  +RM 
Sbjct: 335 SLKCLPKWAADTLKLQAKAKREYIYTSEQLEKGETHDQYWNACQLELVYEGKMNGYMRMY 394

Query: 357 TASFLVKDLLVDWR-----IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF-- 409
               +++      R               LDG   +   G  W     + +    +IF  
Sbjct: 395 WGKKVIEWTANHTRKVMNNCAFSMNDKYELDGRDPNGFAGVAWVFGKHDRAHSRRQIFGT 454

Query: 410 ----NPTIQGKRFDPQ-GTFIRH 427
               N +   ++F P    +++H
Sbjct: 455 LRYMNSSGLERKFKPHLKDYVKH 477


>gi|213422286|ref|ZP_03355352.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 161

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/160 (41%), Positives = 94/160 (58%), Gaps = 3/160 (1%)

Query: 165 LIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFC 223
            ++ L +     +P P IR++G ++    P   +YP QA D  +FP+ E   +  LR FC
Sbjct: 1   WLKRLKEDIPPCVPAPKIRVSGALSIPLTPVSLNYPQQAFDAALFPVEENAVIAQLRHFC 60

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
            +    Y  +RD PA+ GTS+LS  L+ G LSPRQC +RL  E    L         WLN
Sbjct: 61  SQGADEYASRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSV--WLN 118

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
           ELIWREFYRHLM +YP++C  +PFI WT+++ W ++ HL 
Sbjct: 119 ELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHLF 158


>gi|31322268|gb|AAP22940.1| cryptochrome 1 [Arvicanthis ansorgei]
          Length = 155

 Score =  127 bits (318), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 7/123 (5%)

Query: 364 DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           DL + W  G + F   LLD D + N G W W  S  +    +F  + P   G+R DP G 
Sbjct: 2   DLWISWEEGMKVFEELLLDADWSINAGSWMW-LSCSSFFQQFFHCYCPVGFGRRTDPNGD 60

Query: 424 FIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           +IR +LP L   P +YI+ P +  +      K  + LNYP P+V+H +A    + +    
Sbjct: 61  YIRRYLPVLRGFPAKYIYDPWNAPEGVQKVAKCLIGLNYPKPMVNHAEASRLNIERMKQI 120

Query: 478 KKQ 480
            +Q
Sbjct: 121 YQQ 123


>gi|330951090|gb|EGH51350.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae Cit 7]
          Length = 108

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 52/97 (53%), Positives = 65/97 (67%), Gaps = 1/97 (1%)

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           +DGDLASNNGGWQW++STG DS PYFRIFNP  Q +RFDP+G FI+ WLPEL ++  + I
Sbjct: 1   IDGDLASNNGGWQWSSSTGTDSAPYFRIFNPLSQSERFDPEGVFIKRWLPELADLNKKQI 60

Query: 441 HAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAA 477
           H P    D    + +YP PIVD  K+    L  + A 
Sbjct: 61  HDPSLIGDLFGAA-DYPKPIVDLSKSRARALAAFKAL 96


>gi|296082842|emb|CBI22143.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 90/500 (18%), Positives = 160/500 (32%), Gaps = 88/500 (17%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
               + W+  D R+ DN AL  A   ++   + V IA     +  G  ARQ  F+   L 
Sbjct: 21  AGPVVYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLFDQFLGAKARQLGFMLRGLR 80

Query: 67  QVQKSLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            + + L Q   I       S+  ++IE + ++  +   + L  +        +  + + K
Sbjct: 81  LLHRDLEQTLQIPLL---DSHSGEAIETIPNFLREYGASLLVTDFSPLREVQKWKEEICK 137

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           R+  +V     D   ++P   + +  L+        +   +      D  +L  P+I+  
Sbjct: 138 RVGKKVSIHEVDAHNIVPTW-VASEKLEYSARTIRGKINKLLPEYLIDFPTLQPPSIKWA 196

Query: 186 GPVTPSNIPRF----FDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQRDI 236
           G     +             +  +  +   GE  A+ IL      F  +++  Y   R+ 
Sbjct: 197 GTNQSIDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGFLTKRLKNYSTDRNN 256

Query: 237 PAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHL 294
           P   G  S LSPYL  G +S ++C    K+   +           +L ELI  RE   + 
Sbjct: 257 PLKPGALSGLSPYLHFGQISAQRCALEAKKNRKNCP----QAVDVFLEELIVRRELADNF 312

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIGW 348
             + P     +    W  K   +  S   +        +   T  P+ +A+  ++   G 
Sbjct: 313 CFYQPRYNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWNASQLEMVHYGK 372

Query: 349 MHNRLR---------MITASFLVKDLLVD------------------------------W 369
           MH  +R             SF    + +                               W
Sbjct: 373 MHGFMRQFYFDKYHLFCFVSFQCCFMFLCVFMMILRSYKKCYQSQITILRLIKNICRMYW 432

Query: 370 --------RIGEEYFM-------SQLLDGDLASNNGGWQWAASTGNDS-------VPYFR 407
                   R  EE             +DG   +   G  W+    +D            R
Sbjct: 433 AKKILEWTRGPEEALAISIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWQERQIFGKIR 492

Query: 408 IFNPTIQGKRFDPQGTFIRH 427
             N     ++FD  G +I H
Sbjct: 493 YMNYAGCKRKFDVDG-YIAH 511


>gi|289804363|ref|ZP_06534992.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 94

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 68/94 (72%)

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           NNGGWQWAASTG D+ PYFRIFNPT Q +RFD  G FIR WLP L ++P + IH P  W 
Sbjct: 1   NNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFIRQWLPALRDIPGKAIHEPWRWA 60

Query: 448 DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           +K  + L+YP PIV+HK+A   TL+ Y AA+K +
Sbjct: 61  EKAGVVLDYPRPIVEHKQARIATLSAYEAARKGA 94


>gi|170035601|ref|XP_001845657.1| deoxyribodipyrimidine photo-lyase [Culex quinquefasciatus]
 gi|167877630|gb|EDS41013.1| deoxyribodipyrimidine photo-lyase [Culex quinquefasciatus]
          Length = 510

 Score =  126 bits (317), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 69/448 (15%), Positives = 138/448 (30%), Gaps = 49/448 (10%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A   A      ++  +   F   P+         R   F+   L +
Sbjct: 74  VYWMSRDARVQDNWAFLFAQKLAMKNELPLHVCFSLVPKFLEAT---IRHFKFMLKGLEE 130

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V K      I F        D     +  +    ++  +  +        +  + + K L
Sbjct: 131 VAKECESLNIQFHMLTGMAKDT----VPKFVKAHKMGAVVCDFSPLRVPAQWVEDVRKAL 186

Query: 128 QHRVICKSFDDSVLLPPG-----------SILNHALQMYKVYTPFRKALIQNLVQADLRS 176
              V     D   ++P             +I          Y      ++++  ++ L++
Sbjct: 187 PAEVPLCQVDAHNVVPVWVTSEKLEYAARTIRTKVNNNLNTYLTQFPPVVKHPHKSKLKA 246

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            P+   +L   +         ++           G    +  L+ F ++++  +  +R+ 
Sbjct: 247 EPIDWPKLLDTLQVDRTVDEVEWAV--------PGYTGGVATLQGFVEKRLRKFNAKRND 298

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P     S LSP+   G +S ++    +K+          S     +      + + +   
Sbjct: 299 PTDDALSNLSPWFHFGQISVQRAILAVKKYGKGFSEGVASFCEEAIVRRELSDNFCYYNK 358

Query: 297 FYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWK----QGYTGFPIIDAAMRQLNTIGWMH 350
            Y ++   K    W  K   +  KD       +    Q  T   + ++A  Q+   G MH
Sbjct: 359 NYDNL---KGAYDWARKTLDDHRKDKRTHVYTRDQLEQAKTHDDLWNSAQLQMVKEGKMH 415

Query: 351 NRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS----- 402
             LRM  A       K                 LDG   +   G  W+ +  +D      
Sbjct: 416 GFLRMYWAKKILEWTKSPEEALETAIYLNDRYQLDGRDPNGYVGCMWSIAGIHDQGWRER 475

Query: 403 --VPYFRIFNPTIQGKRFDPQGTFIRHW 428
                 R  N     ++FD    F+  +
Sbjct: 476 EVFGKIRYMNYEGCKRKFDV-AAFVARY 502


>gi|56752236|ref|YP_172937.1| deoxyribodipyrimidine photolyase [Synechococcus elongatus PCC 6301]
 gi|56687195|dbj|BAD80417.1| similar to deoxyribodipyrimidine photolyase [Synechococcus
           elongatus PCC 6301]
          Length = 305

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 87/214 (40%), Gaps = 9/214 (4%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
            P G Q A+  L          Y + R+       ++LSPY+  GVLS     +R+  + 
Sbjct: 54  IPGGYQAAIAQLEAI---NPLRYGKSRNFLDG-AVTRLSPYIRHGVLSLATVRDRVLAQI 109

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                   S     + EL WR++++ +   +            T          L    +
Sbjct: 110 RQR-----SDGEKLITELAWRDYWQRIYWEWGDRIWRDREPYKTGWDSQQYSEALPPDLQ 164

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
              TG   +D   R+L   G++HN  RM  A++LV    + W+ G  +F+  LLDGD AS
Sbjct: 165 AAETGLACMDRFSRELKETGYLHNHARMWMAAYLVHWRRIRWQAGARWFLQHLLDGDPAS 224

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           NN  WQW AST +    +F   N        D Q
Sbjct: 225 NNLSWQWVASTFSTKPYWFNRENLQRYNGDRDCQ 258


>gi|170744406|ref|YP_001773061.1| deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46]
 gi|168198680|gb|ACA20627.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium sp. 4-46]
          Length = 465

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 131/434 (30%), Gaps = 23/434 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQ 67
           L  ++  +R  DN AL  A   ++   + V +              +AR   F+   L  
Sbjct: 27  LYLMQQAMRSRDNPALEHAIDEANRLGLPVVVGFGLLDGGRTFPEANARHYAFLLQGLAA 86

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
            +  + ++GI F   + +    ++       L          ++    E+ R        
Sbjct: 87  ARAGVERRGIAFVLRRSTPAAAALALGAEAALAVLDRGYLTVQRAWSAEIARGLACPVVQ 146

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
               +    + +      +      ++ +++  +   L    V      L + +      
Sbjct: 147 VEGDVVVPVETASDKHEFAARTLRPKLQRLWDSYLAPLRARRVAHAADGLALASDLDVSD 206

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              +      D   + +   F  GE  A+  L  +       Y   R+ P     S +SP
Sbjct: 207 PEAALAALTLDRAVRPVRR-FRGGEDEAMARLDAYLAGPFAQYGTVRNRPEAGAASHMSP 265

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL--NELIWREFYRHLMAFY-----PS 300
           YL  G +SP     +++           S     +   EL     +            P 
Sbjct: 266 YLHFGQISPVAIALKVRAAAAGGPEDKASYLEELIVRRELAMNHVHYQPGYDRYESAVPD 325

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
                      ++ +   D   L   ++G T     +AAMR++   G+MHN LRM     
Sbjct: 326 WARRALAEHAGDRRDPLYDEAAL---EEGRTHDRHWNAAMREMRETGYMHNHLRMYWGKK 382

Query: 361 LVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ--- 414
           +++                    LDG   ++     W     +       IF        
Sbjct: 383 ILEWSPSPEEGFRRTLRLNNRYFLDGRDPNSFTNVAWIYGLHDRPWGRRPIFGTVRYLGP 442

Query: 415 --GKRFDPQGTFIR 426
              ++FD  G ++R
Sbjct: 443 NTLRKFDAAG-YLR 455


>gi|99078346|ref|YP_611604.1| deoxyribodipyrimidine photo-lyase family protein [Ruegeria sp.
           TM1040]
 gi|99035484|gb|ABF62342.1| Deoxyribodipyrimidine photo-lyase family protein [Ruegeria sp.
           TM1040]
          Length = 410

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 88/222 (39%), Gaps = 15/222 (6%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           P     AL  +  F       Y   R+           S LSPYL   +L+  +      
Sbjct: 10  PATRAEALLRMEAFTPRMGLNYATFRNHDYGPQRQSAVSMLSPYLRRRLLTEPEVIAAA- 68

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-- 322
                L       A  ++ E++WR +++  M   P V          + +   +D  L  
Sbjct: 69  -----LAAHGPQEADKFVQEVLWRGYFKGWMERRPEVWANYITGRDADFVALEEDPGLAI 123

Query: 323 -LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
            + A + G TG    D   ++L   G++HN  RM  AS  +  L + WR+G ++F+  LL
Sbjct: 124 RVNAAETGETGLAYFDTWAKELVRTGYLHNHARMWFASLWIFTLKLPWRLGADFFLRHLL 183

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFN--PTIQGKRFDPQ 421
           DGD ASN   W+W A       PY    +      G RF PQ
Sbjct: 184 DGDPASNTCSWRWVAGLHTRGKPYVAQASNIARFSGGRFAPQ 225


>gi|156752076|gb|ABU93790.1| cryptochrome 1 [Carassius auratus]
          Length = 132

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P     +   P   +I W+K+   L  W +G TGFP IDA M QL   GW+H+  R
Sbjct: 5   ATNNPRFDKMEG-NPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLAR 63

Query: 355 MITASFLVK-DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTI 413
              A FL + DL + W  G + F   LLD D + N G W W  S  +    +F  + P  
Sbjct: 64  HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW-LSCSSFFQQFFHCYCPVG 122

Query: 414 QGKRFDPQGT 423
            G+R DP G 
Sbjct: 123 FGRRTDPNGD 132


>gi|148243387|ref|YP_001228544.1| DNA photolyase FAD binding subunit [Synechococcus sp. RCC307]
 gi|147851697|emb|CAK29191.1| DNA photolyase FAD binding domain [Synechococcus sp. RCC307]
          Length = 330

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/217 (28%), Positives = 86/217 (39%), Gaps = 14/217 (6%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            G + A   L    K     Y   R+       + LSPY+  GVLS  +  + +      
Sbjct: 85  GGRKAAEMRL---SKVDPARYARSRNHLEGM-VTGLSPYIRHGVLSLAEVRDAVFRRIRH 140

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                K      +NEL WR+F++ +                T     +    L Q    G
Sbjct: 141 RDEGGK-----LINELGWRDFWQRMWLELGDAIAEDQEEYKTGHPASSYSRELPQDLCDG 195

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG   +D    QL T GW+HN  RM  A+++V    V WR G ++F+  LLDGD ASN+
Sbjct: 196 CTGLACMDGFHEQLVTTGWLHNHARMWLAAYVVHWRRVHWRAGADWFLEHLLDGDPASNH 255

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
             WQW AS  +    +F   N           G + R
Sbjct: 256 LSWQWVASCFSHKPYFFNRDNLERYS-----NGRYCR 287


>gi|224005941|ref|XP_002291931.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972450|gb|EED90782.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 485

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 142/411 (34%), Gaps = 59/411 (14%)

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQ-CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            F +A+L     +L +KG         S     ++ L+   +   V+ L  +R       
Sbjct: 9   AFGHAALHSFNATLGKKGQRIHVLSSISMIAKMVKELNPTTIVVDVSLL--DRHCNHASR 66

Query: 118 RRDKLLEKRLQHRV------------------ICKSFDDSVLLPPGSILNHALQMYKVYT 159
            RDKL                           I +  DD +L+P   I     +  +   
Sbjct: 67  LRDKL--HCTNENNDSDDDCDYTSRYTDAIPNIIEVLDDGLLIPMNKIPKALGRSRQGGR 124

Query: 160 PFRKALI----------QNLVQADLRSLPVPAIRLTG---------PVTPSNIPRFFDYP 200
             R +                   L SLP P +  T           + P  I     + 
Sbjct: 125 ILRWSTFLINAILPMENVEKPTWTLTSLPPPPLATTEGMEIILPEQCIAPPQINNLSSWT 184

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--SQLSPYLSIGVLSPRQ 258
            Q +     + E  A+   +               +   +G+  ++LSPYL  GVLSP++
Sbjct: 185 RQLLLDWGEVSEDEAIRRAKSTKSNISSS------LLTEEGSQNTKLSPYLRWGVLSPQR 238

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
                      L        +  +  L   +    ++ +    C         +K+  + 
Sbjct: 239 AAKCGVRRRDLLWRDWSHLCYGLVGPLRRGD---AVLEYMNKACSD---DTSDDKLNADN 292

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
              L + W  G TG+ ++DA MRQL   GWM  + R++ A+ LV+ + V W++G ++F  
Sbjct: 293 KDELFRLWCVGNTGYELVDAGMRQLWAEGWMSRKARLLAAACLVEGMGVSWQLGRDWFAY 352

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWL 429
            L+D D A N   WQ A   G D   Y   +     G     +  ++  W+
Sbjct: 353 TLIDHDPAINEMMWQNAGLCGVDPFYYGLKWEVPPSGIE---EVEYVERWI 400


>gi|294084366|ref|YP_003551124.1| hypothetical protein SAR116_0797 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663939|gb|ADE39040.1| hypothetical protein SAR116_0797 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 267

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 9/206 (4%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE+ A   L+         Y   R+       S+LSPY+  G++S     N        
Sbjct: 37  GGEEPAQIALKNI---NPDQYAHTRNYLDGD-VSRLSPYIRHGIISLNDVRNHAL----- 87

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
            +         ++ EL WR++++      P           T     +    L    + G
Sbjct: 88  SISGEPQQTEKFIQELAWRDYWQRRYRQNPHDIWHDIEAYKTGFTADDYAETLPADIEAG 147

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            TG  +ID  + +L T G++HN  RM  A+++V    + W+ G ++F+  LLDGD ASNN
Sbjct: 148 ETGVAVIDHFIHELCTTGYLHNHARMYVAAYIVHWRRIKWQAGAQWFLHHLLDGDPASNN 207

Query: 390 GGWQWAASTGNDSVPYFRIFNPTIQG 415
             WQW AST  +   ++ + N     
Sbjct: 208 LSWQWVASTFANKPYFYNLENVAKYA 233


>gi|85374772|ref|YP_458834.1| DNA photolyase-like protein [Erythrobacter litoralis HTCC2594]
 gi|84787855|gb|ABC64037.1| DNA photolyase-like protein [Erythrobacter litoralis HTCC2594]
          Length = 407

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 14/222 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDI---PAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           F          L+ F  +    Y E R+    P     SQLSP+L  G+L   +      
Sbjct: 3   FTPTRSAGFDRLQAFLPDAGRQYAETRNYDDGPGRGNVSQLSPWLHTGLLREHEVLEATL 62

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSH 321
            E           A  + NE+ WR +++  +   PS+         T     ++   D  
Sbjct: 63  REH------GARAAEKFGNEIFWRVYFKGYLEQRPSIWRSYCQQRDTALTALDRNAGDRT 116

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             +   +G TG    D   ++L   G++HN  RM  AS  +  L +DW +G ++F+  L+
Sbjct: 117 AYEEATEGRTGIGAFDYWAQELIETGYLHNHARMWFASIWIFTLKLDWTLGADFFLRHLV 176

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRI-FNPTIQGKRFDPQG 422
           DGD ASN   W+W          Y     N      R  P G
Sbjct: 177 DGDAASNTLSWRWVGGLHTKGKTYLATKDNIARYIGRH-PDG 217


>gi|254442576|ref|ZP_05056052.1| hypothetical protein VDG1235_809 [Verrucomicrobiae bacterium
           DG1235]
 gi|198256884|gb|EDY81192.1| hypothetical protein VDG1235_809 [Verrucomicrobiae bacterium
           DG1235]
          Length = 423

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 103/274 (37%), Gaps = 29/274 (10%)

Query: 197 FDYPFQAIDPMFP-----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSP 247
            ++  ++  P  P          AL+ L+ F       Y   R+     G     SQLSP
Sbjct: 1   MNHGLESAQPAAPLTSFVPSRGEALNRLKDFVVRAGSDYRANRNHDGGAGQHVYVSQLSP 60

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           Y+  G++S  +    +      L     + A  +L E+ WR +++  +   P +      
Sbjct: 61  YIRNGLISEEEVVATI------LKSHTFAEAEKFLQEVFWRVYWKGYLENRPVLWTRYRE 114

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                K +   D           TG    D   ++L   G++HN  RM  AS  +  L +
Sbjct: 115 DLEILKNK-AADYQDYPRADSASTGIKCFDTWSQELQETGYLHNHTRMWFASIWIFTLKL 173

Query: 368 DWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPT-IQGKRFDPQGTFI 425
            W++G ++F+  LLDGD ASN   W+W A        Y  R  N       RF       
Sbjct: 174 PWQLGADFFLRHLLDGDPASNTLSWRWVAGLHTKGKNYLARSSNIAKFTANRF------- 226

Query: 426 RHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLP 459
               P++N + TQ      S  D    S   PLP
Sbjct: 227 ----PDVNGLATQADAIEESHPDSPITSTELPLP 256


>gi|297537351|ref|YP_003673120.1| DNA photolyase FAD-binding protein [Methylotenera sp. 301]
 gi|297256698|gb|ADI28543.1| DNA photolyase FAD-binding protein [Methylotenera sp. 301]
          Length = 413

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 20/218 (9%)

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
           F +     +   +  G   AL  L          Y   R+       + LSPYL  G ++
Sbjct: 24  FSEAKGADLQADWAGGRFGALKKLNSI---DAVAYDRNRNFLNG-SVTHLSPYLRHGCVT 79

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS--VCMGKPFIPWTEK 313
             + +  +K  F        + A   + EL WR+++R +     +      +P       
Sbjct: 80  LNEAYEFIKRRF-------DASADKLVYELAWRDYWRQVWFSEGNAIYSDMEPPKVAIGH 132

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQ-LNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
              ++D       +QG TG P +D  + + L   G++HN  RM  +S++V    VDWR+ 
Sbjct: 133 APLSED------IRQGKTGLPCMDGFINEDLFATGYVHNHARMWLSSYIVHHRKVDWRLA 186

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
            ++F + L+DGD+ASN+  WQW AST +    +F   N
Sbjct: 187 ADWFEAYLIDGDIASNHLSWQWVASTFSSKPYFFNKEN 224


>gi|87123060|ref|ZP_01078911.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           RS9917]
 gi|86168780|gb|EAQ70036.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           RS9917]
          Length = 313

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 10/219 (4%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
              G + A   L++    +   Y   R+       ++LSP++  GVLS  +  + +  + 
Sbjct: 68  IQGGRRAAAAQLQQL---EPKRYGRSRNHLDG-AVTRLSPWIRHGVLSLAEVRDAVFLQL 123

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                    GA   +NEL WR+F++ +                T     +    L +  +
Sbjct: 124 QKRGQSRDDGA-KLINELGWRDFWQRMWQALGDRIHDSQEELKTGHDPASYRVELPEDIR 182

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TG   IDA   +L   GW+HN  RM  A+++V    V W+ G ++F+  LLDGD AS
Sbjct: 183 DGRTGLACIDAFRAELVHSGWLHNHARMWLAAYVVHWRRVHWKAGADWFLEHLLDGDPAS 242

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           N+  WQW AS+ +    +F   N           G F R
Sbjct: 243 NHLSWQWVASSFSHKPYFFNRDNLERYS-----NGRFCR 276


>gi|18391386|ref|NP_563906.1| PHR1 (PHOTOLYASE 1); DNA photolyase [Arabidopsis thaliana]
 gi|14334576|gb|AAK59467.1| unknown protein [Arabidopsis thaliana]
 gi|21280945|gb|AAM44957.1| unknown protein [Arabidopsis thaliana]
 gi|332190751|gb|AEE28872.1| photolyase 1 [Arabidopsis thaliana]
          Length = 490

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 150/454 (33%), Gaps = 51/454 (11%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
              +   + W+  D R+ DN AL  A    + ++A V  VF    +        ARQ  F
Sbjct: 24  DQTVGPVVYWMFRDQRLKDNWALIHAVDLANRTNAPVAVVFNLFDQFL---DAKARQLGF 80

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L Q+   +    I F   Q     D+ E + ++  +   + L  +    + E+RR 
Sbjct: 81  MLKGLRQLHHQIDSLQIPFFLLQG----DAKETIPNFLTECGASHLVTD-FSPLREIRRC 135

Query: 121 K-LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLP 178
           K  + KR    +     D   ++P  +  +      +        L+   L++      P
Sbjct: 136 KDEVVKRTSDSLAIHEVDAHNVVPMWAASSKLEYSARTIRGKINKLLPDYLIEFPKLEPP 195

Query: 179 VPAIRLTGPVTPSNIPRFFD----YPFQAIDPMFP-IGEQNALHIL----RKFCKEKVYY 229
                        +     D       +  +  +   GE   + +L      F  +++  
Sbjct: 196 KKKWTGMMDKKLVDWDSLIDKVVREGAEVPEIEWCVPGEDAGIEVLMGNKDGFLTKRLKN 255

Query: 230 YVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-W 287
           Y   R+ P      S LSPYL  G +S ++C    +     +         ++L ELI  
Sbjct: 256 YSTDRNNPIKPKALSGLSPYLHFGQVSAQRCALEAR----KVRSTSPQAVDTFLEELIVR 311

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAAMR 341
           RE   +   + P     K    W  K   +  S        L+  ++G T  P+      
Sbjct: 312 RELSDNFCYYQPHYDSLKGAWEWARKSLMDHASDKREHIYSLEQLEKGLTADPL------ 365

Query: 342 QLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           ++   G MH  +RM  A       K       I         +DG   S   G  W+   
Sbjct: 366 EMVYQGKMHGFMRMYWAKKILEWTKGPEEALSISIYLNNKYEIDGRDPSGYVGCMWSICG 425

Query: 399 GNDS-------VPYFRIFNPTIQGKRFDPQGTFI 425
            +D            R  N     ++F+   ++I
Sbjct: 426 VHDQGWKERPVFGKIRYMNYAGCKRKFNVD-SYI 458


>gi|92429524|gb|ABD93506.2| DNA photolyase protein [Solanum lycopersicum]
          Length = 189

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/194 (22%), Positives = 77/194 (39%), Gaps = 12/194 (6%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQ 67
           W RNDLR+ DN+ L AA HN    V+AV+   P  + +           ++ F+  S+  
Sbjct: 1   WFRNDLRVHDNECLNAA-HNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVAD 59

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++K+L  +G                 L           ++ +R+   +EV+ +  ++  +
Sbjct: 60  LRKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVM 115

Query: 128 Q-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLT 185
           +   +  K F  S L     +     QM   Y  FR+ +    V+  + +L  +  +   
Sbjct: 116 KDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPAR 175

Query: 186 GPVTPSNIPRFFDY 199
           G V P  IP   D 
Sbjct: 176 GDVEPGEIPSLVDL 189


>gi|68304208|ref|YP_249676.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|67973037|gb|AAY84003.1| DNA photolyase 2 [Chrysodeixis chalcites nucleopolyhedrovirus]
          Length = 489

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 147/445 (33%), Gaps = 39/445 (8%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN AL  A   +    + +++        +  S RQ HF+   L +V+ 
Sbjct: 50  VYWMSRDSRVQDNWALIYAQELAHTAKLPLYVVFCMTKSFNNASMRQFHFLIKGLEEVRV 109

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK--LLEKRLQ 128
              +  I F     S        L+ +  +  +  +     +      R+    +  +L 
Sbjct: 110 ECQKLDITFVMLDGSADL----VLNDWVREHDICAVVC--DFNPLRTVREWVSRIRDQLP 163

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V     D   ++P   + ++  +   ++   +              +     R +  +
Sbjct: 164 DTVYFAQVDAHNVVPCW-VASNKQEYSAMFMRKKLNSKLECYLKPFPPVVRHEYRSSVVL 222

Query: 189 TPSN----------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
            P              R  D     +D     G  +AL++L +F +  +  Y   R+ P 
Sbjct: 223 DPCTTTHIDWQQLLASRDADVSVGPVD-WIEPGYISALNVLARFIRCNLLKYKMSRNNPV 281

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP-KSGAFSWLNE-LIWREFYRHLMA 296
           ++  S +SP+   G +S ++    L    ++       S    ++ E  + RE   +   
Sbjct: 282 LKTQSNMSPFYHFGQISVQRVMLHLNSLKINKNDSGIDSNINDYIEECFVRRELADNFCF 341

Query: 297 FYPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  +         W +      K +  +  + L  ++   T   + +AA RQL   G +H
Sbjct: 342 YNSNYDTFLGAPNWAKETLVIHKSDSRQYIYSLLQFEHNQTHDELWNAAQRQLRNEGKIH 401

Query: 351 NRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV---- 403
             LRM  A       +                 LDG   +   G  W+    +D      
Sbjct: 402 GYLRMYWAKKILEWTQTPEQALEYSIYLNDRYSLDGRDPNGYVGCMWSICGLHDRSFLER 461

Query: 404 ---PYFRIFNPTIQGKRFDPQGTFI 425
                 R  N     ++F+ +  +I
Sbjct: 462 QVFGKIRYMNRNGCERKFNVK-QYI 485


>gi|81300676|ref|YP_400884.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus
           elongatus PCC 7942]
 gi|81169557|gb|ABB57897.1| Deoxyribodipyrimidine photo-lyase family protein [Synechococcus
           elongatus PCC 7942]
          Length = 293

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 87/214 (40%), Gaps = 9/214 (4%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
            P G Q A+  L          Y + R+       ++LSPY+  GVLS     +R+  + 
Sbjct: 42  IPGGYQAAIAQLEAI---NPLRYGKSRNFLDG-AVTRLSPYIRHGVLSLATVRDRVLAQI 97

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                   S     + EL WR++++ +   +            T          L    +
Sbjct: 98  RQR-----SDGEKLITELAWRDYWQRIYWEWGDRIWRDREPYKTGWDSQQYSEALPPDLQ 152

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
              TG   +D   R+L   G++HN  RM  A++LV    + W+ G  +F+  LLDGD AS
Sbjct: 153 AAETGLACMDRFSRELKETGYLHNHARMWMAAYLVHWRRIRWQAGARWFLQHLLDGDPAS 212

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           NN  WQW AST +    +F   N        D Q
Sbjct: 213 NNLSWQWVASTFSTKPYWFNRENLQRYNGDRDCQ 246


>gi|157413923|ref|YP_001484789.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9215]
 gi|157388498|gb|ABV51203.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9215]
          Length = 384

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 18/231 (7%)

Query: 215 ALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           A +    F K K+  Y + R+           S+LSP+++  +LS     N +K ++   
Sbjct: 7   AQNTWENFAKYKINDYAKLRNFDFGPNNESSVSKLSPFITHRILSEYDLINDIKSKYK-- 64

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
                  +  ++ E+ WR +++  M   P V          +      D  L +    G 
Sbjct: 65  ----SKNSTKFVEEIFWRVYWKGWMENRPKVWENFISEKNLDF-----DYELYKKAINGN 115

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           T     ++ + +L    ++HN  RM  AS  + +L + W++G ++F   L DGD ASN  
Sbjct: 116 TEIDFFNSWVLELKQHNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLL 175

Query: 391 GWQWAASTGNDSVPY-FRIFNPTIQG-KRFDPQGTFIRH-WLPELNNVPTQ 438
            W+W          Y F   N       RF+ +    +  +L E N +P +
Sbjct: 176 SWRWVGGLQTKGKQYLFSSSNLRKFSNNRFNVEKIINKQIYLEESNQIPLE 226


>gi|296121685|ref|YP_003629463.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
           3776]
 gi|296014025|gb|ADG67264.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
           3776]
          Length = 493

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 80/463 (17%), Positives = 149/463 (32%), Gaps = 48/463 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+ +  R+  N  L  A H +    + + I  P   R    S R  HF+   + +   
Sbjct: 28  LYWMISARRLQWNFGLQQAVHRAQTLNLPLVILEPIGCRAKWSSVRFHHFVIEGMAEHHA 87

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
              ++GI +  +        +  +++Y   Q+   +  +        R  + L +R+   
Sbjct: 88  LCQERGIAYHPYVEPEPGHGVGLVEAY--AQKAAAVITDDFPCYFLPRMVQTLGQRIDVP 145

Query: 131 VICKSFD--------DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           + C   +        D V     +      +  K Y                  +P    
Sbjct: 146 LECVDSNGIFPMRATDQVFTTAHAFRRFLQKNIKPYLSEFPVADSLAGPILSMEIPGQIA 205

Query: 183 RLTGPVTPSNIPR----FFDYPFQAI--DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           R   P TP  + R        P         F  G + A   + +F K ++  Y + R+ 
Sbjct: 206 RKWSPATPGLLNRDASALAQLPIDQTVQPAAFRGGLKAAQEAVARFFKSRLPRYADDRNN 265

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEE--------------FVDLLIKPKSGAFSWL 282
           P  +  S LSPYL  G +S  + ++RL  +                +   +    A ++L
Sbjct: 266 PEQEAASGLSPYLHFGHVSAHEVFSRLAAKESWKPEHLPEKASGSREGWWQMSPAAEAFL 325

Query: 283 NELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPI 335
           +ELI WRE   +  +        +    W  +       +     + L   +   T   +
Sbjct: 326 DELITWREVGYNFTSHREDYDQYESLPAWARQSLEKHAGDHRPSLYDLHQLEIAQTHDEL 385

Query: 336 IDAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
            +AA RQL   G MHN LRM+                           +DG   ++  G 
Sbjct: 386 WNAAQRQLVREGRMHNYLRMLWGKKVLEWSLTPQQAVETLIHLNNKYAVDGRNPNSYSGI 445

Query: 393 QWAASTGNDSVPY-------FRIFNPTIQGKRFDPQGTFIRHW 428
            W     + +           R  +     ++  P   +++ +
Sbjct: 446 FWVFGRYDRAWGPERPIFGTIRYMSSDNTARKL-PVKDYLKRY 487


>gi|88808065|ref|ZP_01123576.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           7805]
 gi|88788104|gb|EAR19260.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           7805]
          Length = 309

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 101/262 (38%), Gaps = 11/262 (4%)

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCK 224
           +  +        P    R        +     ++P  Q        G Q A   L++   
Sbjct: 5   LPPITPLSWPEQPGDLPRDLPDRDALDRRLANEFPSAQGPLSGIQGGRQAAESQLQR--- 61

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            +   Y   R+       ++LSP++  GVL+  +    +  +  D   + +      +NE
Sbjct: 62  MEAKRYGRSRNHLKG-AVTRLSPWIRHGVLTLAEIREAVFAQLRD-RGQGRDDGSKLINE 119

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WR+F++ +                T     +    L    ++G TG   +D    +L 
Sbjct: 120 LGWRDFWQRMWGDLGDGIHESQEELKTGHDPSSYSRELPDDVREGRTGLACMDGFSEELV 179

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
           + GW+HN  RM  A++LV    V W+ G ++F+  LLDGD ASN+  WQW AS+ +    
Sbjct: 180 SSGWLHNHARMWMAAYLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASSFSHKPY 239

Query: 405 YFRIFNPTIQGKRFDPQGTFIR 426
            F   N           G + +
Sbjct: 240 VFNRGNLERYS-----DGRYCK 256


>gi|170782720|ref|YP_001711054.1| putative ATP-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157290|emb|CAQ02475.1| putative ATP-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 408

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 13/221 (5%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIP---AIQGTSQLSPYLSIGVLSPRQCWNRL 263
           MF       L  L  F       Y   R+     +    S LSPYL   +++ ++    +
Sbjct: 1   MFIPTRAAGLEALHDFVDRAGPAYARDRNHDLGASRDNVSGLSPYLRHRLVTEQEVVAAV 60

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
                       S A  ++ E+ WR +++  +   P     + +    E++         
Sbjct: 61  LARH------SLSAAEKFVQEVFWRTYWKGWLEQNPEAW--RRYRRDVEELTAGDLPTGY 112

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
                G +G   +DA +R+L   G++HN  RM  AS  +  L + W++G ++F   LLDG
Sbjct: 113 LDAVGGRSGIDAMDAWVRELVETGYLHNHTRMWFASIWIFTLGLPWQLGADFFHRHLLDG 172

Query: 384 DLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQG 422
           D ASN   W+W A        Y     N     + RF P G
Sbjct: 173 DAASNTLSWRWVAGLQTRGKTYLASAANIARYTEGRFSPAG 213


>gi|126735514|ref|ZP_01751259.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
 gi|126714701|gb|EBA11567.1| probable deoxyribodipyrimidine photolyase [Roseobacter sp. CCS2]
          Length = 487

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 87/425 (20%), Positives = 144/425 (33%), Gaps = 22/425 (5%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  + +  L W++  LR  DN  + AA    +   + V +    +      S R  HFI 
Sbjct: 22  APASCAYVLCWIQQTLRSDDNPLIDAAIDLGNRLGLPVLVYHGLREDYPHASDRLHHFIL 81

Query: 63  ASLLQVQKSLSQKGIV---FQYHQCSNFDDSIEWLDSYCLQ--QRVTKLFYNRQ-YEINE 116
            +   +Q+   ++G+    F     +     +  L +           +F  RQ  +   
Sbjct: 82  RASRDLQRECVRRGLRCVTFVDQAQTREKGLVYRLAATAAAVLTDDQPVFVARQQADNFA 141

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            R D+ +      R++      + L    +    +  +   Y   R   + +        
Sbjct: 142 ARCDRAVFAVDTARLVPTRVLPAGLKTTPAFRKASGALRPQYEVHRNNFVPDCPAYTGDV 201

Query: 177 LPVPAIRLTGPVTP-SNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               A       T  +++    D        P F      A   L  F  + +  Y  +R
Sbjct: 202 CFKDANLAQASNTALNDLMAHCDIDHSLPPAPDFEPSAAAARSALDGFVTDALATYPYRR 261

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           +  A + G S+LSPYL  GVL PR+    ++   V    K K         L WRE++ +
Sbjct: 262 NNAADKAGVSRLSPYLHFGVLGPRKMTAAVRAADVTANAKWK----YLDELLTWREYFHY 317

Query: 294 LMAFYPSVCMGK--PFIPWTEKIEWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           L     +    +  P  P T     + D     + L     G TG    +AA RQ    G
Sbjct: 318 LAYQDDNFASFRSLPDAPRTSLEAHSSDPRPTLYALTDLVHGNTGDETWNAAQRQWLATG 377

Query: 348 WMHNRLRMITASFLVK---DLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
           +MHN LRM     ++K   D    W           LDG   +  G  +W       +  
Sbjct: 378 YMHNNLRMYWGKQIIKWTPDPETAWDTACYLNDRLALDGRDPATYGNMKWVFGMAKPAWK 437

Query: 405 YFRIF 409
              I+
Sbjct: 438 EQPIY 442


>gi|319954988|ref|YP_004166255.1| DNA photolyase fad-binding protein [Cellulophaga algicola DSM
           14237]
 gi|319423648|gb|ADV50757.1| DNA photolyase FAD-binding protein [Cellulophaga algicola DSM
           14237]
          Length = 378

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 84/213 (39%), Gaps = 13/213 (6%)

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           ++P FP         +          Y   R+       S LSPYL+ GV+S +Q +  L
Sbjct: 8   LNPEFPTDMDAIQKRI---AHVDPRKYASSRNYIDG-SVSYLSPYLARGVISTKQVYQSL 63

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            E    +     S A  ++ EL WR++++ +     +        P        ++  + 
Sbjct: 64  LERGFTI-----SNAEKFIQELAWRDYWQQVWIHKENAIDSDLKHPQ----PTVENYEIP 114

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +   +G TG   ID A+  L   G+MHN LRM  AS         W+I  ++    LLD 
Sbjct: 115 KIVAEGTTGIIAIDEAISLLYKTGYMHNHLRMYIASIACNVAKSHWKIPAQWMYYHLLDA 174

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           D ASN   WQW A   ++   Y    N      
Sbjct: 175 DWASNALSWQWVAGANSNKKYYANQENINRYCH 207


>gi|312143870|ref|YP_003995316.1| DNA photolyase FAD-binding protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904521|gb|ADQ14962.1| DNA photolyase FAD-binding protein [Halanaerobium sp.
           'sapolanicus']
          Length = 458

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 144/446 (32%), Gaps = 51/446 (11%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              +  + W+++  RI+ N AL  A   ++     +FI                 F++A 
Sbjct: 17  NKANYVVYWMQSAQRISYNHALSYAAERANKLNQPLFIFFLIDKDFPEAEYGHYEFMFAG 76

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK-LFYNRQYEINEVRRDKLL 123
           L +++    +K I F      +        D+   Q      LF + +  +  +++ K  
Sbjct: 77  LKELKNRFEEKDINFFIFNYED--------DAIFEQIAAKASLFVSEKSYLKNLKKWKAK 128

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
              L  ++   + + +V+ P   +                 + +  +       P     
Sbjct: 129 TANL-IKIPFYTVETNVICPVEEVSEKEEYAAYTIRKKINKIREQYLSDYNEIQPENKTV 187

Query: 184 LTGP------VTPSNIPRFFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQR 234
           L  P      +         +  F+        F  G Q A   L +F   K+  Y E+R
Sbjct: 188 LKLPEEINKYLIEDLDQYLAEMTFEDKISYKNFFKGGYQAAEQKLNEFLTNKIADYGEKR 247

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRH 293
           +IP     S LSPYL  G +S ++   R  E            A  +L ELI  RE   +
Sbjct: 248 NIPYFDYQSDLSPYLHFGQISAQEIALRALE--------NSKEAEEFLEELIVRRELSFN 299

Query: 294 LMAFY-----------PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            + +            P            +K ++N     L   K   T     +AA  +
Sbjct: 300 FVYYNQNYDGSLKDVLPDWAAKSLKKHAADKRDYNYSYEQL---KNAETHDQYWNAAQTE 356

Query: 343 LNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           +   G MHN +RM         V +    ++   +      LDG   ++  G  W     
Sbjct: 357 MKITGKMHNYMRMYWGKKILEWVSEPEKAYQYALKLNNKYSLDGRDPNSYAGVAWCFGKH 416

Query: 400 NDSV------PYFRIFNPTIQGKRFD 419
           + +          R  N     ++FD
Sbjct: 417 DRAWKERNIFGKIRYMNSNGLERKFD 442


>gi|302847741|ref|XP_002955404.1| cryptochrome [Volvox carteri f. nagariensis]
 gi|300259246|gb|EFJ43475.1| cryptochrome [Volvox carteri f. nagariensis]
          Length = 738

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 95/265 (35%), Gaps = 70/265 (26%)

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEE----------------------------FVD 269
            +  +++LSP++++G ++ RQ    L                                  
Sbjct: 482 GVDSSTKLSPFVALGCITSRQIHEELSTTPPLPGSCFGTLVSSPFALAGVNPAWVCIRAR 541

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK------IEWNKDSHLL 323
              +  S +     E  W   +  +  F+    + +      E+      + W  D    
Sbjct: 542 CTCRWSSSSVPAPAECDWLAMHLCIRDFFIFTTLKEGDAVLDERGIMGLPVSWRNDMETF 601

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             W QG TG P +DA MR+L   GWM NR R   AS L KDL VDWR G E F S L+D 
Sbjct: 602 TRWAQGRTGLPFVDANMRELAVTGWMSNRGRQNVASLLTKDLGVDWRWGAELFESLLVDC 661

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           D+A N   W + A  GND  P  R F                            + +  P
Sbjct: 662 DVAVNYCNWNYFAGIGND--PRNRHF----------------------------KTVTQP 691

Query: 444 HSWLDKND------LSLNYPLPIVD 462
            +   +        L  +YP P+VD
Sbjct: 692 WAMTAEEAEQYSFVLGRDYPFPLVD 716


>gi|294053665|ref|YP_003547323.1| DNA photolyase FAD-binding protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293612998|gb|ADE53153.1| DNA photolyase FAD-binding protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 399

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 11/196 (5%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEF 267
              AL  L  F       Y E R+           S+LSP++   +L      + + E  
Sbjct: 6   RSAALAALGDFLPHAGRDYAEGRNTDPGPEQQGAVSRLSPWIRTRMLPEWYVISAVLERH 65

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                   S A  +++E+ WR +++  +   PS+      +   + ++   D        
Sbjct: 66  ------SASAASKYIDEVCWRTYWKGWLQLRPSIWKDY-LLARNDLLDQYADHPDYNNAI 118

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TG    DA  ++L     +HN  RM  AS  V  L + W++G ++F+  LLDGD AS
Sbjct: 119 SGQTGIDCFDAWAKELTETNQLHNHARMWYASIWVHSLKLPWQLGADWFLRHLLDGDPAS 178

Query: 388 NNGGWQWAASTGNDSV 403
           N   W+W         
Sbjct: 179 NTLSWRWVTGLHTRGK 194


>gi|188581711|ref|YP_001925156.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
 gi|179345209|gb|ACB80621.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
          Length = 467

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 67/441 (15%), Positives = 127/441 (28%), Gaps = 36/441 (8%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA---RQSHFIYASL 65
           + L  ++  +R+  N AL  A   ++   + + +        +G      R   F+   L
Sbjct: 22  IVLYLMQQAMRVPFNPALELAIEEANRLKLPLLVCFGLLDGANGFPEANERHYAFLLQGL 81

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY------EINEVRR 119
                +L ++GI F   + +    +I+        ++   L  +R Y          + R
Sbjct: 82  ADAAAALDRRGIAFLVRRGTPAQVAIDL------SEKAALLVLDRGYLAIQKNWYGAIER 135

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           +           +    + +      +      ++ K++  + + L    V      L  
Sbjct: 136 EAKCRVVQVEGDVVVPVETASAKHEYAARTLRPKLQKLWDDYLEPLEPRAVDHPAEGLIE 195

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAID---PMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                 G                        F  G   A   L  F K+    Y   R+ 
Sbjct: 196 RLKLKDGLDVSDPDTLLAKLKLDTTVGPVKRFRGGHTEAAERLDSFLKDAFAGYGAGRNK 255

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL-------NELIWRE 289
           P     S +SPYL  G +SP +    ++           +     +       N +   E
Sbjct: 256 PEAGAASHMSPYLHFGHISPVETALAIRAAEGADRDDRSAYLEELIVRRELAMNHVFHTE 315

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            Y       P            +          L    +G T     + AMR++   G+M
Sbjct: 316 GYDDYARAVPEWARKTLAEHADDARPKLYSEEEL---AEGKTHDHYWNVAMREMRETGYM 372

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYF 406
           HN+LRM     +++                    LDG  A++     W     +      
Sbjct: 373 HNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDGRDANSFTNVAWIFGLHDRPWQTR 432

Query: 407 RIFNPTIQG-----KRFDPQG 422
            IF           ++FD + 
Sbjct: 433 PIFGSVRYQSENSLRKFDAKA 453


>gi|255078656|ref|XP_002502908.1| DNA photolyase [Micromonas sp. RCC299]
 gi|226518174|gb|ACO64166.1| DNA photolyase [Micromonas sp. RCC299]
          Length = 478

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 86/468 (18%), Positives = 141/468 (30%), Gaps = 59/468 (12%)

Query: 8   SVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
              + W+  D R  DN AL  A          +  VF   PE        ARQ  F+   
Sbjct: 17  GPVVYWMSRDQRAMDNWALCHALAVAREHRRPLHVVFALVPEFANA---GARQYCFMLRG 73

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLL 123
           L +++  L   GI F   Q  +   S+    +   +   + L  +     I    RD + 
Sbjct: 74  LRELESRLRDLGIPFHLAQGPDPGVSV---PAAAERLGCSMLVTDFSPLRIGRAWRDSVT 130

Query: 124 EKRLQHRVICKSFDDSVLLPPG-----------SILNHALQMYKVYTPFRKAL--IQNLV 170
                  V     D   ++P             +I          +      +  ++   
Sbjct: 131 TLLCPVDVPVAEVDAHNVVPAWVASEKQEYAARTIRKKINGRLTDFLTDFPTVEDVREAA 190

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-----QAIDPMFP----IGEQNALHIL-- 219
                      +R  G +    +             + + P  P     GE  AL  L  
Sbjct: 191 TEAAAGAEKHPVRSAGSIDWDGLIDAARAGAGGAVPEVLSPSPPRSRAPGETAALAALFG 250

Query: 220 --RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
               F   ++  Y  + D    +  S LSPYL  G LS ++C     +       K    
Sbjct: 251 TSASFLPNRLALYGSRNDPNVPEALSGLSPYLHFGQLSAQRCAVEATKH----RAKHPEA 306

Query: 278 AFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGY 330
             S+L ELI  RE   +     P          W          +  + ++ L+  +   
Sbjct: 307 VDSFLEELIVRRELADNFCLHNPHYDSIAGAPGWARESLALHASDAREFAYTLEELEHSR 366

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD----LLVDWRIGEEYFMSQLLDGDLA 386
           T   + +AA ++L  +G MH  LRM  A  +++          R          LDG   
Sbjct: 367 THDELWNAAQKELTHLGTMHGFLRMYWAKKILEWTGEGPEEALRRAIYLNDRYQLDGRDP 426

Query: 387 SNNGGWQWAASTGNDS-------VPYFRIFNPTIQGKRFDPQGTFIRH 427
           +   G  WA    +D            R  N     ++F     ++  
Sbjct: 427 NGYVGCMWAICGVHDQGWKERDVFGKVRYMNYAGCKRKF-KIAEYVER 473


>gi|113954353|ref|YP_729493.1| blue light photoreceptor cryptochrome [Synechococcus sp. CC9311]
 gi|113881704|gb|ABI46662.1| blue light photoreceptor cryptochrome [Synechococcus sp. CC9311]
          Length = 315

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/247 (24%), Positives = 98/247 (39%), Gaps = 6/247 (2%)

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
            +     S  +P   L      S + + F      + P+   G   A   L         
Sbjct: 9   PLSWPSESTDLPRDLLERTALNSLLSQEFPNALGELSPI-EGGRAAAERQL---SAMDAK 64

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
            Y   R+       ++LSPY+  G+L+  +  + +  +      +  +G    +NEL WR
Sbjct: 65  RYGRSRNHLNG-SVTRLSPYIRHGILTLAEVRDAVFSQLKQTSQRRDNG-EKLINELGWR 122

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +F++ +                T       +  L    ++G T    +D    +L T GW
Sbjct: 123 DFWQRMWLDLGDRIHDDQEDHKTGHAASEYEQGLPDDIREGRTNLACMDGFRNELVTQGW 182

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
           +HN  RM  A++LV    V WR+G ++F+  LLDGD ASN+  WQW AS  +    +F  
Sbjct: 183 LHNHARMWMAAYLVHWRRVHWRVGADWFLEHLLDGDPASNHLSWQWVASCFSHKPYFFNR 242

Query: 409 FNPTIQG 415
            N     
Sbjct: 243 QNLERYS 249


>gi|254527101|ref|ZP_05139153.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9202]
 gi|221538525|gb|EEE40978.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9202]
          Length = 384

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 94/231 (40%), Gaps = 18/231 (7%)

Query: 215 ALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           A  I   F K K+  Y   R+           S+LSP+++  +LS     N +K ++   
Sbjct: 7   AQSIWDNFAKCKINDYARLRNFDFGPNNESSVSKLSPFITHRILSEYDLINDIKSKYK-- 64

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
                  +  ++ E+ WR +++  M   P V        +  +   N D  L +    G 
Sbjct: 65  ----IKNSTKFVEEIFWRVYWKGWMENRPKVWEN-----FISEKNLNFDYELYKKAINGN 115

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           T     ++ + +L    ++HN  RM  AS  + +L + W++G ++F   L DGD ASN  
Sbjct: 116 TEIDFFNSWVLELKQHNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNLL 175

Query: 391 GWQWAASTGNDSVPY-FRIFNPTIQG-KRFDPQGTFIRH-WLPELNNVPTQ 438
            W+W          Y F   N       RF+ +    +  +L E   +P +
Sbjct: 176 SWRWVGGLQTKGKQYLFSSSNLRKFSNNRFNVEKIINKQIYLEESTQIPLE 226


>gi|255076989|ref|XP_002502150.1| predicted protein [Micromonas sp. RCC299]
 gi|226517415|gb|ACO63408.1| predicted protein [Micromonas sp. RCC299]
          Length = 645

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 158/470 (33%), Gaps = 55/470 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+W+++  R   N AL  A   ++   + +             + R   F+Y  L+++++
Sbjct: 125 LLWVQSAQRAMHNDALEYAVQRANEHDVPLVAVFGSTAGFPHANERHLAFMYQGLVELRE 184

Query: 71  SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +L + +G+    +      +  E + +        ++  +  Y    +   + L KR   
Sbjct: 185 TLERTRGVQLLAYTPVGGGEPGEVIVA--ASAGAREVIVDAGYTRPLLDWRRTLAKRADR 242

Query: 130 RVICKSFDDSV-LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP---------- 178
            V     D  V L  PG     +        P   + +  L + +L   P          
Sbjct: 243 LVTEVECDVVVPLYGPGGGAGRSEPAAATLRPKILSRLPALTRNELEPTPLRRRLAARLD 302

Query: 179 VPAIRLTGPVTPS-------NIPRFFDYPFQAIDPMF----------------PIGEQNA 215
             A+ L G   P         +    D    A+D                     GE+ A
Sbjct: 303 AEALLLGGEGEPGMAGFARVPLWESVDACLDALDAAVLGVGVDRSVKPASGYHVGGEREA 362

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           L  L +F + K+  Y   R+ P+++  S LSP++  G +S     +R ++       + +
Sbjct: 363 LRKLDRFLESKLTNYASSRNDPSLRLQSHLSPHIHYGQISVVYVAHRARK-VAAARPELR 421

Query: 276 SGAFSWLNEL-IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQ 328
                +L+EL + RE   +     P+    +    W  +      +        L+ +++
Sbjct: 422 RSVDVFLDELVVRRELAINFCLNNPAYDAYEGVPEWARRTLATHATDHRSFVYTLEQFER 481

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDL 385
             T   + +AA R+L   G  HN LRM  A        D    W           LDG  
Sbjct: 482 CATHDALWNAAQRELVVSGKQHNYLRMYWAKKMLEWSADPREAWCWAIHLNNKYSLDGRD 541

Query: 386 ASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRFDPQ-GTFIRHW 428
            S+  G  W     +   P        R  +      +F+     ++  W
Sbjct: 542 PSSYTGVGWCWGLHDREFPEAAVTGTVRRMSEAGMRSKFNAGVSDYLNRW 591


>gi|123966755|ref|YP_001011836.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9515]
 gi|123201121|gb|ABM72729.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9515]
          Length = 378

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 18/231 (7%)

Query: 213 QNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
           Q+A      F + K+  Y + R+       +   S+LSPY+S  +L   +    +K+++ 
Sbjct: 5   QDAQEKWVDFLENKIQNYEKFRNFDYGPENVSSVSKLSPYVSHRILLEYELIEEVKKKYQ 64

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
              I        ++ E+ WR +++  M   P+V +        +      D    +    
Sbjct: 65  SQKIN------KFIEEIYWRIYWKGWMENRPNVWVDFISEKNFK-----YDFEAYEKAIN 113

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G T     ++ + +L T  ++HN  RM  AS  + +  + W +G  +F   L DGD ASN
Sbjct: 114 GDTDLSFFNSWVNELKTHNYLHNHTRMWFASTWIFNFGLPWELGANFFFKHLYDGDSASN 173

Query: 389 NGGWQWAASTGNDSVPY-FRIFNPTIQG-KRFDPQGTFIRH-WLPELNNVP 436
              W+W A        Y F   N       RF+ +    +  +L ELN +P
Sbjct: 174 ILSWRWVAGLQTKGKQYLFSPSNLRKFSNNRFNVEKINNKQIFLEELNQIP 224


>gi|254505021|ref|ZP_05117172.1| hypothetical protein SADFL11_5060 [Labrenzia alexandrii DFL-11]
 gi|222441092|gb|EEE47771.1| hypothetical protein SADFL11_5060 [Labrenzia alexandrii DFL-11]
          Length = 384

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 15/201 (7%)

Query: 230 YVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           Y  QR+     G     S LSPY+   ++S ++           L      GA  ++ E+
Sbjct: 5   YAAQRNHDRGSGKHTSVSCLSPYIRRRLISEQEVVTAA------LRNHGLDGAEKFIQEV 58

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS---HLLQAWKQGYTGFPIIDAAMRQ 342
            WR +++  +   P++          +  +  KDS     +   + G TG    DA + +
Sbjct: 59  FWRGYFKGWLERRPAIWTSYRQGLTADLEDLKKDSGLRQAVARAEAGQTGIDCFDAWVNE 118

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           L   G++HN +RM  AS  +  L + WRIG ++F   LLDGD ASN   W+W A      
Sbjct: 119 LIDTGYLHNHVRMWFASIWIFTLKLPWRIGADFFYRHLLDGDPASNTLSWRWVAGLHTRG 178

Query: 403 VPYF-RIFNPT-IQGKRFDPQ 421
             Y  + +N     G RF P+
Sbjct: 179 KTYEAQAWNIAKFTGGRFAPE 199


>gi|84516926|ref|ZP_01004284.1| DNA photolyase-like protein [Loktanella vestfoldensis SKA53]
 gi|84509394|gb|EAQ05853.1| DNA photolyase-like protein [Loktanella vestfoldensis SKA53]
          Length = 400

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 11/221 (4%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
           MF     +A+  L  F       Y   R+   I   S LSPY+   +++       +   
Sbjct: 1   MFTPTYTDAVTRLAAFTPHAGRDYAAMRNHDDIAHVSALSPYIRHRIITEADVLRAVLAR 60

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMG--KPFIPWTEKIEWNKD-SHLL 323
                      A  ++ E+ WR +++  +   P+V     +       +I+         
Sbjct: 61  H------SPQAAEKFVQEVFWRTYWKGWLELRPTVWANYQRDLAAAMNQIQTQAGLRAQW 114

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +    G TG    D   RQL   G++HN  RM  AS  +  L + W +G ++F+  LLDG
Sbjct: 115 ETACLGQTGIDGFDHWARQLADTGYLHNHARMWFASIWIHTLKLPWVLGADFFLRHLLDG 174

Query: 384 DLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQG 422
           D ASN   W+W          Y  +  N     + RF P+G
Sbjct: 175 DAASNTLSWRWVGGIQTQGKAYLAQPDNIAKYTQGRFRPEG 215


>gi|325518601|gb|EGC98260.1| deoxyribodipyrimidine photolyase [Burkholderia sp. TJI49]
          Length = 111

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/111 (47%), Positives = 66/111 (59%), Gaps = 6/111 (5%)

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFL K LL+DWR GE +F   L+D D A+N   WQW A  G D+ PYFRIFNP  Q
Sbjct: 1   MVVASFLAKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGVDAAPYFRIFNPVAQ 60

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLP 459
           G+RFDP G ++R W+PEL  +    IHAP              L ++YP P
Sbjct: 61  GRRFDPHGAYVRRWVPELAGLDDAAIHAPWEASTLALAAAGVRLGVDYPAP 111


>gi|114765681|ref|ZP_01444780.1| DNA photolyase-like protein [Pelagibaca bermudensis HTCC2601]
 gi|114542003|gb|EAU45037.1| DNA photolyase-like protein [Roseovarius sp. HTCC2601]
          Length = 401

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 13/206 (6%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEF 267
            +  L  L  F       Y E R      G     S LSPYL   +++  +  +   E  
Sbjct: 8   REAGLRRLEAFRPHMGRDYAELRGFDLGAGGHVHVSGLSPYLRRRLVTEPEVISTAVE-- 65

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL---LQ 324
                    GA ++++E++WR +++  +   P V          +    ++D+ L   + 
Sbjct: 66  ----THGIDGAGTFVSEVLWRSYFKGWLEQRPQVWNDYRDGLRRDLAALDEDADLRDRVA 121

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
               G TG   +D    +L   G++HN  RM  AS  +    + WR+G ++F+  LLDGD
Sbjct: 122 RVCAGRTGLAGVDDWAAELVQTGYLHNHARMWFASIWIFTRGLPWRLGADFFLRHLLDGD 181

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFN 410
            ASN   W+W A        Y     
Sbjct: 182 PASNTCSWRWVAGLHTRGKHYEAQAC 207


>gi|315500507|ref|YP_004089309.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB
           48]
 gi|315418519|gb|ADU15158.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB
           48]
          Length = 390

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 13/217 (5%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEF 267
              AL  L  F       Y   R+I          S+LSPY+   ++   +     ++  
Sbjct: 8   RAQALERLEAFLPRAGSAYARDRNIDPGPNDTGHVSKLSPYVRHRLIGEWELARAAEKAH 67

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
                K       +++E+ WR ++R  +   P++         +++ E  + +    A  
Sbjct: 68  GAAASK-------FIDEVCWRSYWRGYLEMRPALWASYVDYLLSDEAETARQTDTYCAAV 120

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G TG    D    +L T G++HN  RM  AS  V  L + W++G  +F+  LLDGD A+
Sbjct: 121 SGQTGIDAFDVWTAELITTGYLHNHARMSFASIWVHTLRLPWQLGAAFFLEHLLDGDEAA 180

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPT--IQGKRFDPQG 422
           N   W+W A        Y             RF P G
Sbjct: 181 NTLSWRWVAGLHTPGKVYLASSEAIDTCSAGRFRPTG 217


>gi|310779936|ref|YP_003968268.1| Deoxyribodipyrimidine photo-lyase type II [Ilyobacter polytropus
           DSM 2926]
 gi|309749259|gb|ADO83920.1| Deoxyribodipyrimidine photo-lyase type II [Ilyobacter polytropus
           DSM 2926]
          Length = 459

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/449 (15%), Positives = 147/449 (32%), Gaps = 46/449 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N  L      ++     + +           + R   F+   L  V+K
Sbjct: 21  LYWMQGSQRTRYNHCLEYGVLKANEMKKPLIVIFNLIDGYPDANERHYSFMLEGLKDVKK 80

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L  + I F         + ++        ++ + L  ++ Y    +   K     +  +
Sbjct: 81  ALFARKIEFYISHGDMAKNIVKA------SEKASILICDKGY----MNIQKKWRAEISSK 130

Query: 131 VICKSF--DDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPV-PAIRLTG 186
           V C++   D ++++P            +      ++ L + L   +     V  +     
Sbjct: 131 VKCQAVEIDTNLVVPVEEASQKEEYAARTIREKIKRQLDEFLYDFEKIKYSVNKSYNKKF 190

Query: 187 PVTPSNIPRFFDYPFQAID-----------PMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
               +N+ +  D   + +D             F  GE  A   L +F + K+  Y  +  
Sbjct: 191 CFYENNLNKDLDNVGKVLDNMKLNRSVSKSSFFYGGEIEAEKRLDEFIEIKLESYSYKNS 250

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHL 294
            P     S+LSPYL  G +SP +    L +   +          ++L EL I RE   + 
Sbjct: 251 DPGEDNVSKLSPYLHFGNISPVEIALELLKMKNET---NSESIEAFLEELIIRRELSHNF 307

Query: 295 MAFYPSVCMGKPFIPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           + +                      + +  ++ + L+  ++  T     +AA +++   G
Sbjct: 308 IYYNERYDKWDGISYSWAYETLEKHRSDKRENIYSLEKLEKYKTHDIYWNAAQKEMVVTG 367

Query: 348 WMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV- 403
           +MH  +RM          K     +           LDG   ++  G  W     + +  
Sbjct: 368 FMHGYMRMYWCKKILEWSKTPEEAYERTIYLNNKYFLDGRDPNSYTGVAWCFGKHDRAWK 427

Query: 404 -----PYFRIFNPTIQGKRFDPQGTFIRH 427
                   R  N     ++FD    +++ 
Sbjct: 428 ERSIFGKIRYMNSEGLKRKFDMD-KYVKK 455


>gi|300781309|ref|ZP_07091163.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
           33030]
 gi|300533016|gb|EFK54077.1| deoxyribodipyrimidine photolyase [Corynebacterium genitalium ATCC
           33030]
          Length = 179

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 7/181 (3%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M + T   + L W R+DLR+TDN AL  A  +    V+ +FI   E      + A  + +
Sbjct: 1   MVSPTPQPLALAWFRDDLRLTDNAALTWAAQHG--HVVGLFIFE-EIDAARPLGAAAAWW 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
              S+ ++   L+Q+G+              E +     +   T + +NR+Y +     D
Sbjct: 58  QRESVRKLHADLAQRGVHLIIEHGDPR----EIIPRIAAELGATAVTWNRRYHLLFRDVD 113

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L++ L       S    +L  P ++   +   ++V+TP+ KA    L+ A       P
Sbjct: 114 AELKRTLAQSCEVTSHPGYLLNEPWTVQTGSGTPFRVFTPYGKASQSMLIDAPPTPSLSP 173

Query: 181 A 181
            
Sbjct: 174 T 174


>gi|92429530|gb|ABD93509.2| DNA photolyase protein [Nicotiana tomentosiformis]
          Length = 170

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 68/170 (40%), Gaps = 11/170 (6%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQV 68
            RNDLR+ DN++L AA HN    V+ V+   P  + +           ++ F+  S+  +
Sbjct: 1   FRNDLRVHDNESLNAA-HNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVTDL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L  +G                 L           ++ +R+   +EV+ +  +E  ++
Sbjct: 60  RKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEDKIESVMK 115

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
              V  K F  S L     +     +M   Y  FR+ +    V+  + +L
Sbjct: 116 DEGVEVKYFWGSTLYHVDDLPFKLEEMPTNYGGFREKVQGLEVRKTIEAL 165


>gi|148238603|ref|YP_001223990.1| FAD binding domain-containing protein [Synechococcus sp. WH 7803]
 gi|147847142|emb|CAK22693.1| FAD binding domain of DNA photolyase [Synechococcus sp. WH 7803]
          Length = 340

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 98/250 (39%), Gaps = 11/250 (4%)

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           P    R        +     ++P  Q        G Q A   L++        Y   R+ 
Sbjct: 48  PGDLPRDLADRDALDQLLASEFPSAQGPLSRIQGGRQAAESQLQR---MDAKRYGRSRNH 104

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
                 ++LSP++  GVL+  +    +  +  D       G    +NEL WR+F++ + +
Sbjct: 105 LKG-AVTRLSPWIRHGVLTLAEIREVVFAQLRDRGQGRDDGG-KLINELGWRDFWQRMWS 162

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                         T     +    L    ++G TG   +D     L + GW+HN  RM 
Sbjct: 163 DLGDSIHESQEELKTGHDPASYSRELPDDVREGRTGLACMDGFRDDLVSSGWLHNHARMW 222

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
            A++LV    V W+ G ++F+  LLDGD ASN+  WQW AS+ +    +F   N      
Sbjct: 223 MAAYLVHWRRVHWKAGADWFLEHLLDGDPASNHLSWQWVASSFSHKPYFFNRGNLERYS- 281

Query: 417 RFDPQGTFIR 426
                G + +
Sbjct: 282 ----DGKYCK 287


>gi|92429532|gb|ABD93510.2| DNA photolyase protein [Capsicum annuum]
          Length = 188

 Score =  121 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 74/193 (38%), Gaps = 12/193 (6%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQV 68
            RNDLR+ DN+ L AA HN    V+ V+   P  + +           ++ F+  S+  +
Sbjct: 1   FRNDLRVHDNECLXAA-HNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVKDL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L  +G                 L           ++ +R+   +EV+ +  ++  ++
Sbjct: 60  RKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEDKIDAVMK 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTG 186
              +  K F  S L     +     +M   Y  FR+ +    V+  + +L  +      G
Sbjct: 116 DEGLDVKFFWGSTLYHLDDLPFKLEEMPTNYGGFREKVQGLEVRKTIEALDQLRGFPARG 175

Query: 187 PVTPSNIPRFFDY 199
            V P  IP   D 
Sbjct: 176 DVEPGEIPSLVDL 188


>gi|67906774|gb|AAY82837.1| predicted deoxyribodipyrimidine photolyase [uncultured bacterium
           MedeBAC46A06]
          Length = 287

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/209 (26%), Positives = 86/209 (41%), Gaps = 19/209 (9%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   R+       ++LSPY+  G+LS  +  N         ++     A  ++ EL WR+
Sbjct: 74  YAASRNHLDG-AVTRLSPYIRHGILSLDEVRNAAL-----AMVDDPKQAEKFIQELAWRD 127

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +++ L   +P           T     + D  L      G TG   ID  +  L   G++
Sbjct: 128 YWQRLYLAHPEWIWADVESYKTGFDSSDYDPDLPDDIAAGETGVACIDQFIATLVETGYL 187

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN  RM  A++ V    V W+ G  +F+  L+D D ASNN  WQW AST ++    F + 
Sbjct: 188 HNHARMYLAAYTVHWRRVSWQAGARWFLGHLIDADPASNNLSWQWIASTFSNKPYIFNLE 247

Query: 410 NPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
           N                   PE+N +P  
Sbjct: 248 NVAKYSG-------------PEINTIPKH 263


>gi|158292451|ref|XP_313925.3| AGAP005052-PA [Anopheles gambiae str. PEST]
 gi|157016998|gb|EAA09350.3| AGAP005052-PA [Anopheles gambiae str. PEST]
          Length = 549

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/447 (14%), Positives = 146/447 (32%), Gaps = 50/447 (11%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W+  D R+ DN A   A      +D  +   F   P+         R   F+   L +
Sbjct: 113 LYWMSRDARVQDNWAFLFAQKLALKNDLPLHVCFNLVPKFLDAT---IRHFKFMLKGLEE 169

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +   +  I F   + S  ++    + ++  + ++  +  +       ++    + K L
Sbjct: 170 VAEECRRLNIQFHLLRGSAGEN----VPAFVKKHKIGGVVCDFSPLRVPMKWVDEVRKAL 225

Query: 128 QHRVICKSFDDSVLLPPG-----------SILNHALQMYKVYTPFRKALIQNLVQADLRS 176
              +     D   ++P             +I     +    Y      L+++   A+  +
Sbjct: 226 PMEIPLCQVDAHNIVPVWVTSDKLEYAARTIRTKVNKNLPTYLTPFPPLVKHPFTANFEA 285

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            P+   ++   +         ++           G    +  L+ F ++++  + ++R+ 
Sbjct: 286 DPINWTQVLDTLQVDRTVEAVEWAT--------PGYAGGVKTLQTFVEKRLGKFNDKRND 337

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLM 295
           P     S LSP+   G ++ ++    +K+       +      S+  E ++ RE   +  
Sbjct: 338 PTENALSNLSPWFHFGQIAVQRAVLTVKKH----GKRYSESVASFCEEAIVRRELSDNFC 393

Query: 296 AFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWM 349
               +    +    W  K   +  KD  +    ++      T   + ++A  Q+   G M
Sbjct: 394 FHNKNYDNLQGAYDWARKTLDDHRKDKRVYCYSREELETAKTHDDLWNSAQLQMVKEGKM 453

Query: 350 HNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS---- 402
           H  LRM  A       K                 LDG   +   G  W+ +  +D     
Sbjct: 454 HGFLRMYWAKKILEWTKTPEEALETAIYLNDRYSLDGRDPNGYVGCMWSIAGIHDQGWKE 513

Query: 403 ---VPYFRIFNPTIQGKRFDPQGTFIR 426
                  R  N     ++F+     +R
Sbjct: 514 REIFGKIRYMNYDGCKRKFNVNAFVVR 540


>gi|283779092|ref|YP_003369847.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
 gi|283437545|gb|ADB15987.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
          Length = 824

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 149/429 (34%), Gaps = 42/429 (9%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           ++  + L WLR  +R  +N AL  A   ++   + + +      +    S RQ  F+   
Sbjct: 34  SSGKLVLYWLRTAMRAHENPALDLAIEFANQLALPLVVYQGLSEKYPYASDRQHRFVIEG 93

Query: 65  LLQVQKSLSQKGIVF--QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           ++ +   + ++GI +     +  + +  ++ L +         +    +  ++ +RR   
Sbjct: 94  MINLASEMRERGIHYLPHIERGEHREPYLQKLAAQ------AAVVITEEMPVDPLRRWTS 147

Query: 123 LEKRLQHRVICKSFDDSVLLP----PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           L  R        + D + + P    P S              + K L     +  L S P
Sbjct: 148 LASR-HTTGPVYTVDTACVWPMPRMPQSYDRAFAFRDAAGDYYDKNLTLPWDEEQLTSRP 206

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP------IGEQNALHILRKFCKEKVYYYVE 232
            P +    P   S            ID           G         +F +  +  Y  
Sbjct: 207 TPELADIEPTPISPQNIAEIIAACEIDHTLAAAAETRGGSVAGYERWNQFRQTGLRNYAA 266

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFY 291
           +R+ P    TS++S YL  G++SP +          +   +  +GA  +L+EL+ WRE  
Sbjct: 267 RRNDPLHPTTSRMSAYLHYGMVSPLRI-------AREASAQGGAGAEKYLDELLVWRELA 319

Query: 292 RHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            +   F+ ++        W ++       +   + +  +   +G T   + +   + L  
Sbjct: 320 YNYCYFHRAIDRLSTLPRWAQETLAQHAGDRRPNIYSWEQLARGQTDDELWNLTQQSLLR 379

Query: 346 IGWMHNRLRMITASFLVKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
            G +HN LRM     L+           +  +      LDG   ++ GG  W        
Sbjct: 380 HGELHNNLRMTWGKRLLDWTASPHDALAMAIDLNHRYALDGRDPASYGGLLWCFGLF--- 436

Query: 403 VPYFRIFNP 411
               R F+P
Sbjct: 437 ---DRPFHP 442


>gi|167563425|ref|ZP_02356341.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis EO147]
          Length = 188

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 85/179 (47%), Gaps = 7/179 (3%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A  +++  +VW R+DLR++D+ AL  A   S   VI  ++   E      +      +
Sbjct: 1   MSAVLSIAPAVVWFRDDLRVSDHPALVRAAE-SGRPVIGAYVFD-ECAGGRPLGGAARWW 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G            D  + + S+        +++NR+Y + +   D
Sbjct: 59  LHGSLRALDAALAALGSRLVLLSG----DEADTITSFAAALGAGAVYWNRRYALAQRAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             ++  L+ R I  ++F+ S+L  PG ++  + + Y+V+T + +A ++  V A   + P
Sbjct: 115 NTVQTALEARGIDVETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHAAPLAAP 173


>gi|148368871|ref|YP_001257001.1| DNA photolyase [Spodoptera litura granulovirus]
 gi|147883384|gb|ABQ51993.1| DNA photolyase [Spodoptera litura granulovirus]
          Length = 466

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 127/435 (29%), Gaps = 25/435 (5%)

Query: 11  LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D RI DN A   A      + A +   F              RQ HF+   L  
Sbjct: 38  VYWMSRDSRIEDNWAFLYAQQIAIQNQAPLHVCFCLVTWFCNA---GMRQFHFLLEGLKF 94

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           VQ+   +  + F     S      + L  +C +  V  +  +    +  +     L+K L
Sbjct: 95  VQQECKRLNVSFHLLDGSGD----QVLLDWCNRNDVDVIVCDFNPTVKPMEWIHNLKKTL 150

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              +     D   +LP    L+            RK         D +  P    +    
Sbjct: 151 PGHMSLTQVDAHNILPCWRQLSAPSTHSFRKIAVRKLNRYLTQFPDAKVHPYGTAKFPHV 210

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
              + +                 G   A+    KF K ++  Y E R+ P     S LSP
Sbjct: 211 DWDALLQSRNADTSVEPVTWAEAGYHGAIKTFTKFVKCRIQSYHELRNKPTEAVCSNLSP 270

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G +S ++    +K           +            + +      Y S+    P 
Sbjct: 271 WLHFGQISAQRVILHVKSLTNVKGDNIDTFVDECFIRRELADNFCFYTKRYDSIEASAPN 330

Query: 308 IPWTEKIEWNKDSHL----LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF--- 360
                     KD       L+ ++   T   + +AA  QL   G MH  +RM        
Sbjct: 331 WALITLKAHEKDRRQYVYSLKVFENADTHDLLWNAAQIQLVREGKMHQYMRMYWCKKILE 390

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNPTI 413
              D                LDG   +   G  W+    +D            R  N   
Sbjct: 391 WSDDAQTALNYAIYLNDKYSLDGRDPNGYVGCLWSICGLHDRAWREIPIYGKIRYMNYNG 450

Query: 414 QGKRFDPQGTFIRHW 428
             ++F+    +I  +
Sbjct: 451 CVRKFNVNH-YINQY 464


>gi|9631430|ref|NP_048306.1| ORF MSV235 putative CPD photolyase, similar to Monodelphis
           domestica GB:D31902 [Melanoplus sanguinipes
           entomopoxvirus]
 gi|4049783|gb|AAC97743.1| ORF MSV235 putative CPD photolyase, similar to Monodelphis
           domestica GB:D31902 [Melanoplus sanguinipes
           entomopoxvirus]
          Length = 466

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 151/448 (33%), Gaps = 52/448 (11%)

Query: 11  LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W   D RI DN  L  A      S + +       PE         RQ  F+   + Q
Sbjct: 36  LYWCVRDQRIQDNWGLIYAQELALKSKSSLHMCICLVPEFLNAT---IRQFDFMLNGVKQ 92

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++      I F          S++ L  +  +  +  L      +   ++       +L
Sbjct: 93  MEEECKNLNIHFHLL----IGISVDVLPKFIKKYNIGVLI----VDFYPIKIFNNWVNQL 144

Query: 128 --QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             +  +     D   ++P     N      K     R  +   L +     +P+      
Sbjct: 145 ISKINIDVYQVDSHNIVPCWIASNKLEYSAKTI---RNKINYKLSEYLTEFIPIIKHTYN 201

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPI-----GEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
             +  +N  +  +        + P+     G + A  IL  F + ++  Y ++R+ P   
Sbjct: 202 TYIKINNNWKKAEQSLNIDRNVKPVSWAKSGTKYAFKILDIFIQNRLKDYAKKRNDPNAN 261

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSP++  G +S ++    + +      + PKS        +I +E   +   +  +
Sbjct: 262 AISNLSPWIHFGQISTQRIILEINKY---KKLYPKSVEVFCEEAIIRKELCDNFCYYNEN 318

Query: 301 VCMGKPFIPWT------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                    W        K +  K  + L   +   T   + +A+ +Q+   G MH  LR
Sbjct: 319 YDNINGANNWAIKTLNEHKNDTRKHIYSLYQLENALTHDNLWNASQKQMIIYGKMHGYLR 378

Query: 355 MITASFLVKD-------LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV---- 403
           M  A  +++        L +   + ++YF    +DG   +   G  W+    +D      
Sbjct: 379 MYWAKKILEWTKSPEEALYISIYLNDKYF----IDGRDPNGYVGCMWSICGIHDRAWKER 434

Query: 404 ---PYFRIFNPTIQGKRFDPQGTFIRHW 428
                 R  +     ++FD    FI+ +
Sbjct: 435 PIFGKIRYMSYEGCRRKFDVD-LFIKKY 461


>gi|195148597|ref|XP_002015257.1| GL19602 [Drosophila persimilis]
 gi|194107210|gb|EDW29253.1| GL19602 [Drosophila persimilis]
          Length = 204

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 12/197 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISA 55
           M AT A  VH  W R  LR+ DN AL      ++A      V  +FI  P       + A
Sbjct: 1   MDATHATLVH--WFRKGLRVHDNPALTQIFSAANAAPEKFHVRPIFILDPGILDWMQVGA 58

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +  F+  +L  + + L +        +    D       S+ ++     L +    E  
Sbjct: 59  NRWRFLQQTLHDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVEL----LTFETDIEPY 114

Query: 116 EVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
            ++RD  ++K  +   I   +     +  P  ++   +    +      +++  L    +
Sbjct: 115 ALQRDAAVQKLAKAEGIKVDTHCSHTIYNPELVIAKNMGKAPITYQKFLSVVDQLKVPKV 174

Query: 175 RSLPVPAIRLTGPVTPS 191
             LP   ++   P    
Sbjct: 175 LELPEQLVKKALPPKDE 191


>gi|78779842|ref|YP_397954.1| deoxyribodipyrimidine photo-lyase family protein [Prochlorococcus
           marinus str. MIT 9312]
 gi|78713341|gb|ABB50518.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Prochlorococcus marinus str. MIT 9312]
          Length = 384

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 18/232 (7%)

Query: 214 NALHILRKFCKEKVYYYVEQRDI---PAIQGT-SQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            A ++   F K K+  Y + R+    P  +G+ S+LSP+++  +LS     N +K ++  
Sbjct: 6   EAQNVWDNFAKYKINDYSKLRNFDFGPNNEGSVSKLSPFITHRILSEYDLINDIKSKYK- 64

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQG 329
                   +  ++ E+ WR +++  M   P V          +      D  L +    G
Sbjct: 65  -----IKNSTKFVEEIFWRVYWKGWMENRPKVWQYFTLEKNLDF-----DYELYENAISG 114

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNN 389
            T     ++ + +L    ++HN  RM  AS  + +L + W++G ++F   L DGD ASN 
Sbjct: 115 NTELDFFNSWVLELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDAASNL 174

Query: 390 GGWQWAASTGNDSVPY-FRIFNPTIQG-KRFDPQGTFIRH-WLPELNNVPTQ 438
             W+W A        Y F   N       RF+ +    +   + EL+ +P +
Sbjct: 175 LSWRWVAGLQTKGKRYLFSSSNLRKFSNNRFNVEKIINKQISIEELDQIPLE 226


>gi|92429526|gb|ABD93507.2| DNA photolyase protein [Solanum melongena]
          Length = 187

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 12/192 (6%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQV 68
            RNDLR+ DN+ L AA + S   V+ V+   P  + +           ++ F+  S+  +
Sbjct: 1   FRNDLRVHDNECLNAANNES-MSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVADL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +K+L  +G                 L           ++ +R+   +EV+ +  ++  ++
Sbjct: 60  RKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMK 115

Query: 129 -HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTG 186
              +  K F  S L     +     +M   Y  FR+ +    ++  + +L     +   G
Sbjct: 116 DEGLEVKYFWGSTLYHIDDLPFKLEEMPTNYGGFREKVQGLEIRKTVEALDQMRGLPARG 175

Query: 187 PVTPSNIPRFFD 198
            V P  IP   D
Sbjct: 176 DVEPGEIPSLVD 187


>gi|212275870|ref|NP_001130580.1| hypothetical protein LOC100191679 [Zea mays]
 gi|194689542|gb|ACF78855.1| unknown [Zea mays]
          Length = 493

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 77/461 (16%), Positives = 153/461 (33%), Gaps = 50/461 (10%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNS-----DAKVIAVFIATPEQWRQHGISARQSHFIY 62
              + W+  D R+ DN AL  A   +      A +   F   P  +   G   RQ  F+ 
Sbjct: 26  GPVVYWMLRDQRLADNWALLHAAELAAASTPAAPLAIAFTLFPRPF-LLGAHLRQLGFLL 84

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDK 121
             L ++      +G+ F   +    +     L S   +   + L  +           D 
Sbjct: 85  RGLRRLAADAHARGLPFFLLEGGPAE-----LPSLVRRLGASALVADFSPLRPVREALDA 139

Query: 122 LLEKRLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------D 173
           ++++ L+    +     D   ++P       + ++      FR  + + + +        
Sbjct: 140 VVQELLRDAANMAVHQVDAHNVVPVW---TASGKLEYSAKTFRSKVNKVINEYLVEYPEV 196

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVY 228
            +  P    +       + I   F       +  +   GE +A+ +L      F  +++ 
Sbjct: 197 PQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESSAMEVLLGSKDGFLTKRIK 256

Query: 229 YYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y   R+ P      S LSPYL  G +S ++C    K+      + PKS        +I 
Sbjct: 257 NYDTGRNDPTKPHALSCLSPYLHFGHISAQRCALEAKKR---RHLSPKSVDTFLEELIIR 313

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           RE   +   + P          W  K       +  +  +  +  +   T  P+ +A+  
Sbjct: 314 RELADNFCYYQPQYDSLAGAWEWARKTLTDHTGDKREHIYTREQLENAKTSDPLWNASQL 373

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAAST 398
           ++   G MH  +RM  A  +++          I         +DG   +   G  W+   
Sbjct: 374 EMVHHGKMHGFMRMYWAKKILEWTSQPEEALSIAIYLNDKYHIDGRDPNGYVGCMWSICG 433

Query: 399 GNDS-------VPYFRIFNPTIQGKRFDPQG--TFIRHWLP 430
            +D            R  N     ++FD     ++++  +P
Sbjct: 434 LHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLVP 474


>gi|22298095|ref|NP_681342.1| putative deoxyribodipyrimidine [Thermosynechococcus elongatus BP-1]
 gi|22294273|dbj|BAC08104.1| tll0552 [Thermosynechococcus elongatus BP-1]
          Length = 276

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 18/216 (8%)

Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            A   L      +   Y ++R+    +  + LS YL  GV+S     +R+++     L+ 
Sbjct: 52  AAQERLANI---QPLRYGKRRNFLTGE-VTGLSAYLRHGVISLAAVRDRVRQ-----LVD 102

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYT 331
             S A + L +L WR++++ L A +        +P+      +++  D  L  A     T
Sbjct: 103 DPSEAEALLQQLAWRDYWQRLYAHWGDRLWQDIEPYKTGWSAVDYATD--LPAALVAAET 160

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G   +DA    L   G++HN  R+  A+++V    V W+ G  +F+  LLDGD ASNN  
Sbjct: 161 GLACMDAFSSDLQRTGYLHNHARLWLAAYVVHWCRVRWQAGAAWFLQHLLDGDPASNNLS 220

Query: 392 WQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           WQW AST +    +F   N           G + R 
Sbjct: 221 WQWVASTFSHKPYFFNRQNLERYS-----DGKYCRQ 251


>gi|188579437|ref|YP_001922882.1| deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
 gi|179342935|gb|ACB78347.1| Deoxyribodipyrimidine photo-lyase [Methylobacterium populi BJ001]
          Length = 476

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 72/451 (15%), Positives = 149/451 (33%), Gaps = 41/451 (9%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + A    S  L W+    R   N AL  A   ++ + + V +           +AR   F
Sbjct: 31  LPARDGASYVLYWMGLSQRARFNPALEYAVEEANGRGLPVLVCYGLAEGIPEANARHWAF 90

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   + +V   L+++GI +   +    +       +         +  +R Y    ++  
Sbjct: 91  LLEGMAEVGPELAKRGIAYVARRQPPVE------TALLYAADAALVICDRNY----LKPV 140

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
           +        R  C+            +   + +        R  + + L +  +      
Sbjct: 141 RRFYADFAARAPCRVVQVEG-EVVVPVETASPKHEVAARTLRPKIRRLLPEYLVPLEERS 199

Query: 181 AIRLTGPVTPSNIPRFFDYPF--------QAIDPM--FPIGEQNALHILRKFCKEKVYYY 230
                  ++  +     D P         Q++ P+  F  G   A   L  +   +  +Y
Sbjct: 200 VAHRADHLSFESTLDLSDVPRLVASLKADQSVRPVRRFKGGTTQAEATLSHYLDARFNHY 259

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WRE 289
            + R  P     S +SPYL  G +SP     +++          +    ++L ELI  RE
Sbjct: 260 AQIRGRPEAGAASHMSPYLHYGQISPVAIALKVQA----AATGGEDDKAAYLEELIVRRE 315

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
              + + + P+    +    W  K       +     +  + +++G T     +AAM ++
Sbjct: 316 LAMNHIYYEPNYDSYEAAPAWARKTLDAHRGDPRPYLYTPEQFERGETHDRYWNAAMMEM 375

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGN 400
              G+MHN +RM     +++         E          +DG  A++     W     +
Sbjct: 376 RETGYMHNHMRMYWGKKILEWSASPEEAFETALRLNNKYFIDGRDANSFTNVTWLFGLHD 435

Query: 401 DSVPYFRIFNPTI-----QGKRFDPQGTFIR 426
                  ++           K+FD  G ++R
Sbjct: 436 RPWGPRPVYGNVRSLGAATLKKFDADG-YVR 465


>gi|116071562|ref|ZP_01468830.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
 gi|116065185|gb|EAU70943.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. BL107]
          Length = 298

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 95/249 (38%), Gaps = 13/249 (5%)

Query: 172 ADLRSLPVPAIRLTGPVTP-SNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKV 227
               + P  A  L   ++    +    +  F            G   A   ++   K   
Sbjct: 1   MPAPASPPIAGDLPRDISSREALNTLLEQEFPEASGAISPIRGGRTAAEKQIQ---KMDG 57

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y   R+       ++LSPY+  GV +  +  + +        I  +      +NEL W
Sbjct: 58  KRYARSRNHLNG-AVTRLSPYIRHGVFTLAEVRDAVFR-----GISKRDDGSKLINELGW 111

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+F++ +                T     +    L    + G TG   +D    +L + G
Sbjct: 112 RDFWQRMWQNLGDRINDDQEELKTGHSAASYSRELPDDVRDGCTGLACMDGFRNELVSTG 171

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+HN  RM  A++LV    V W+ G ++F+  LLDGD ASN+  WQW AST +    +F 
Sbjct: 172 WLHNHARMWMAAWLVHWRHVHWKAGADWFLEHLLDGDPASNHLSWQWIASTFSHKPYFFN 231

Query: 408 IFNPTIQGK 416
             N     +
Sbjct: 232 RDNLERYSE 240


>gi|33330687|gb|AAQ10672.1| type II CPD photolyase [Stellaria longipes]
          Length = 499

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 78/459 (16%), Positives = 150/459 (32%), Gaps = 38/459 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
              T     + W+  + R  DN  L  A + ++   + + +         G  AR   F+
Sbjct: 24  PNPTQKGAVVYWMLREQRAQDNWRLIHAVNEANKMNVPIAVTFNLFDAFKGAKARHLGFM 83

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  +  +L  + + F   Q     + +E +  + ++   + L  +        +  +
Sbjct: 84  LRGLKLLHSNLLLQHLPFFLFQG----EVVETIPKFLIECGASLLVTDFSPLREIRKYKE 139

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            L K +   V     D   ++P     +      +        L+   +  D  +L  P 
Sbjct: 140 ELCKIIDDSVSIHEVDAHNVVPVWEASSKLEYGARTIRSKINKLLPTYL-IDFPTLTSPN 198

Query: 182 IRLTGPVTPSNIPRFFDY----PFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVE 232
            R        +     +       +  +  +   GE  AL +L      F  +++  Y  
Sbjct: 199 QRWPSSPPDIDWDGLIEERIKQGAEVPEIDWCEPGETAALEVLMGEKDGFLTKRLKKYGT 258

Query: 233 QRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREF 290
            R+IP      S LSPYL  G +S ++C    ++    +         ++L ELI  RE 
Sbjct: 259 DRNIPLKPRALSGLSPYLHFGQISAQRCALEARQ----VRKLSPESVDTFLEELIVRREL 314

Query: 291 YRHLMAFYPSVCMGKPFIPWTEK--IEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLN 344
             +   + P     K    W  K  ++   D       ++      T  P+ +A+  ++ 
Sbjct: 315 ADNFCYYQPHYDSIKGAWDWARKTLMDHASDKREHLYTREQLEKAQTADPLWNASQMEMV 374

Query: 345 TIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           T G MH  +RM                  I         + G   +   G  W+    +D
Sbjct: 375 TFGKMHGFMRMYWPKKILEWTNGPEEALEIAIYLNDKYEIAGRDPNGYVGCMWSICGIHD 434

Query: 402 S-------VPYFRIFNPTIQGKRFDPQG--TFIRHWLPE 431
                       R  N     ++FD  G  ++I+  + E
Sbjct: 435 QGWKERPVFGKIRYMNYAGCKRKFDVDGYISYIKKLVGE 473


>gi|89055300|ref|YP_510751.1| deoxyribodipyrimidine photo-lyase family protein [Jannaschia sp.
           CCS1]
 gi|88864849|gb|ABD55726.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Jannaschia sp. CCS1]
          Length = 403

 Score =  120 bits (300), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 18/228 (7%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLK 264
           P      L  L +F       Y  +R+           SQLSPYL   +++  +    + 
Sbjct: 6   PPTRAAGLERLARFVPAAGRDYAAKRNYDLPGQGHPHVSQLSPYLRHRLVTEEEVLEAVL 65

Query: 265 EEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
           E +        + A  ++ E+ WR +++  +   PS      +    + I    D   + 
Sbjct: 66  ERY------SLANAEKFVAEVCWRTYWKGWLELRPSAWAE--YRRDLDHI----DRTGVA 113

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
             + G T     +A  R+L   G++HN  RM  AS  +  L + W+ G ++FM  LLDGD
Sbjct: 114 KAEAGQTDIDAFNAWTRELVETGYLHNHARMWFASIWIFTLGLPWQAGADFFMRHLLDGD 173

Query: 385 LASNNGGWQWAASTGNDSVPYF-RIFNPTIQG-KRFDPQGTFIRHWLP 430
            ASN   W+W A        Y  R  N +     R +P+        P
Sbjct: 174 PASNTLSWRWVAGLQTHGKHYVARSSNISKYTDGRHNPEWRLNTQAEP 221


>gi|326427066|gb|EGD72636.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
          Length = 512

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 134/441 (30%), Gaps = 37/441 (8%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
                + W+  D R  DN AL  A     ++   ++ VF   P+         R   F+ 
Sbjct: 27  GGKCVVYWMSRDQRAKDNWALLYARSLARSARVPLVVVFSLVPKFLDAT---IRHYGFML 83

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             L Q  K L +K + F   Q S    +   + ++  Q     +  +       +R  K 
Sbjct: 84  RGLHQTAKHLHEKLVPFHLLQGS----AATTVPAFAAQHEAAAVICDMSPLRVPLRWVKD 139

Query: 123 LEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           + + L+   V     D   ++P            +   P     +   +Q          
Sbjct: 140 VGQALEAQNVPLLQVDAHNIVPVWVTSQKQEYAARTIRPKIHKHLDTYLQPFPELDANDK 199

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDP------MFPIGEQNALHILRKFCKEKVYYYVEQRD 235
             L     P        +    +D           G +  +     F +++   + E R+
Sbjct: 200 DTLGDMELPPVFDLEAQFDMLEVDTSVKEVDWIEPGYEQGMAAAEAFGRDRAKKFDELRN 259

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL 294
            P     S LSPY   G +S       LK ++         G  +++ E ++ RE   + 
Sbjct: 260 NPNEDVCSNLSPYFHFGQISAAAVVLLLKSKYSKKAA---KGVQTFIEEAVVRRELSDNF 316

Query: 295 MAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGW 348
             +            W          D       ++    G T   + +AA  Q+   G 
Sbjct: 317 CFYNRRYDSIDGAAVWARDTLDTHRHDKREYVYTREQLEQGKTHDDLWNAAQLQMVERGK 376

Query: 349 MHNRLRMITASFLVKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS--- 402
           MH  LRM  A  +++         +          LDG   +   G  W+ +  +D    
Sbjct: 377 MHGFLRMYWAKKILEWTATPEDALQTALFLNDRYELDGRDPNGYVGCMWSIAGIHDQGWA 436

Query: 403 ----VPYFRIFNPTIQGKRFD 419
                   R  N     ++FD
Sbjct: 437 ERAVFGKIRYMNYKGCKRKFD 457


>gi|68164596|gb|AAY87325.1| predicted deoxyribodipyrimidine photolyase [uncultured bacterium
           BAC17H8]
          Length = 269

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   R+       ++LSPY+  GVLS  +  N       D        A  ++ EL WR+
Sbjct: 56  YAASRNHLDG-AVTRLSPYIRHGVLSLDEVRNHAVAAVRDPRE-----AEKFVQELAWRD 109

Query: 290 FYRHLMAFYPSVCMG--KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           +++ +   +P       + +    +  E+ +D  L        TG   ID     L   G
Sbjct: 110 YWQRIYLAHPDRIWNDVEAYKTGFDAGEYEQD--LPGDVADAETGVACIDQFATMLMETG 167

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           ++HN  RM  A+++V    V W+ G  +F+  L+D D ASNN  WQW AST ++    F 
Sbjct: 168 YLHNHARMYLAAYIVHWRRVSWQAGARWFLEHLIDADPASNNLSWQWVASTFSNKPYIFN 227

Query: 408 IFNPTIQG 415
           + N     
Sbjct: 228 LDNVAKYS 235


>gi|33864760|ref|NP_896319.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
 gi|33632283|emb|CAE06739.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
           8102]
          Length = 299

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 92/248 (37%), Gaps = 10/248 (4%)

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKV 227
           +        P    R              ++P  +      P G Q A   L      + 
Sbjct: 1   MPSTPSPHNPGDLPRQFASRDALEALLVEEFPSAEGPLSPIPGGRQAAEAKL---AGVQP 57

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y + R+       + LSPY+  GVL+  +    + E         K      +NEL W
Sbjct: 58  ARYAKSRNHLNG-AVTGLSPYIRHGVLTLAEVKQAVFERIRKRDDGGK-----LINELGW 111

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+F++ +                T     +    L Q  + G TG   +D    +L T G
Sbjct: 112 RDFWQRMWLDLGDGIHDDQEAFKTGHDASSYARELPQDVRDGRTGLACMDGFRDKLVTTG 171

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+HN  RM  A++LV    V W  G  +F+  LLDGD ASN+  WQW AS+ +    +F 
Sbjct: 172 WLHNHARMWMAAWLVHWRRVHWTAGANWFLEHLLDGDPASNHLSWQWVASSFSHKPYFFN 231

Query: 408 IFNPTIQG 415
             N     
Sbjct: 232 RGNLERYS 239


>gi|300712647|ref|YP_003738460.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3]
 gi|299126331|gb|ADJ16669.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3]
          Length = 196

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 16/155 (10%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           MR L   G+++ R+R + ASF    L   WRIG ++    L+D D A N   WQ      
Sbjct: 1   MRALTETGFLNFRMRAMVASFFSYILKQWWRIGADFMYYHLIDADPAINYAQWQMQCGLV 60

Query: 400 NDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS----WLDKNDLSLN 455
                  RI+NP  Q +  DP G FIR ++PEL N+ T ++  P        +++ +++ 
Sbjct: 61  --GCHPNRIYNPRKQVRENDPAGEFIREYVPELQNLSTTFLERPEKTPLHVQEQSGVTIG 118

Query: 456 ------YPLPIVDHKK----ACHHTLNQYYAAKKQ 480
                 YP PIVD ++    A     ++  AA++ 
Sbjct: 119 DTSDAVYPYPIVDFEREATLAREQFNDRADAAREA 153


>gi|156095570|ref|XP_001613820.1| deoxyribodipyrimidine photolyase [Plasmodium vivax SaI-1]
 gi|148802694|gb|EDL44093.1| deoxyribodipyrimidine photolyase, putative [Plasmodium vivax]
          Length = 973

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 149/430 (34%), Gaps = 26/430 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+ L  D R  DN AL  A   +  K + + IA     R+  +++R  +     L  +++
Sbjct: 494 LLLLTRDFRANDNWALTYAYELAKKKGLNL-IACTYLNRKEKLTSRFINAKLKVLKNLEQ 552

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L Q  I F           I+    +     +  +  +     +E    K L      R
Sbjct: 553 ALKQMNIPFYILPL----FMIDEFKEFIKTHHIKVIACDLHVLNDERAFIKSLCHICNKR 608

Query: 131 -VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIRLTGPV 188
            V     D   ++P            +   P  +AL+   L +  L S     I+   P 
Sbjct: 609 KVKVFQVDSHNVIPIWVTSKGEECSVRTIKPKIQALLPTFLTEYVLLSPFEQKIKFPEPF 668

Query: 189 TPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
               +          A+       E+ A  +L  FC++ +  Y  +R+ P     + L P
Sbjct: 669 DMEEVASKLTVTNTCAVVSGAVFTEKKAQELLSHFCRQVLDKYNVKRNDPNSDAATVLLP 728

Query: 248 YLSIGVLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGK 305
           Y+++GV+S ++C   + +  + +  I   SG  S+ ++ I  +E   +   +  + C  +
Sbjct: 729 YVNMGVISAQRCILEVHKHAYSNPSINAVSGKESFTDDFIMRKELADNYCYYNRNYCTFE 788

Query: 306 PFIPWTEKIEWNKDSH------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               W ++     D+         + ++   T   + +    QL   G MH  L++  A 
Sbjct: 789 GGRDWAKESLKKHDADKREYLYDYEDFRTAKTHSDLWNCCQLQLIDEGVMHEFLKVYWAK 848

Query: 360 F---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIF 409
                  +  V  +   +      +DG   S      W+    +D            R  
Sbjct: 849 KILNWSANSQVALKYAMQLNEEFSIDGKTPSGYVSIMWSIMGVHDQGWNERNIFGKVRFI 908

Query: 410 NPTIQGKRFD 419
           N     + FD
Sbjct: 909 NSNGCKRNFD 918


>gi|149916364|ref|ZP_01904884.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149809818|gb|EDM69670.1| deoxyribodipyrimidine photo-lyase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 407

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 84/227 (37%), Gaps = 14/227 (6%)

Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVL 254
               A    F      AL  LR F  +    Y   R+     G     S LSPYL   +L
Sbjct: 1   MDGSATPQSFEPTRNAALDRLRVFAPKAGGDYARLRNYDLGPGRHSHVSTLSPYLRHRLL 60

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
           +  +    +              A  ++ E+ WR +++  +   P+V             
Sbjct: 61  TEDEVLRTVLARH------SPQAAEKFIQEVFWRSYWKGWLEMRPAVWTAYRAGLAAALN 114

Query: 315 EWNKDSHLLQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
               +S L Q W     G TG    D    +L   G++HN  RM  AS  V  L + W +
Sbjct: 115 RTQVESGLRQRWSDACNGQTGIDGFDHWAHELIQTGYLHNHARMWFASIWVFTLGLPWEL 174

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGKR 417
           G ++F+  L DGD ASN  GW+W A        Y  R  N     +R
Sbjct: 175 GADFFLRHLHDGDPASNTLGWRWVAGLQTRGKTYLARPDNIARYTER 221


>gi|311747654|ref|ZP_07721439.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
 gi|126575640|gb|EAZ79950.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
          Length = 365

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/258 (25%), Positives = 106/258 (41%), Gaps = 25/258 (9%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           FP   +     + K        Y   R+       +QLSPY+S GV+S  Q +     E+
Sbjct: 4   FPTNTKGIKKRIEKI---DPLRYAASRNFQDG-AVTQLSPYISRGVISTNQVF-----EY 54

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KDSHLLQAW 326
           +  L  P S     + EL WR++++ +      +  G+      +  +   ++  +  A 
Sbjct: 55  IKSLNFPWSQCEKLVQELAWRDYWQQVW-----LAKGEAIFEDLKNEQKPVQNHQIPSAI 109

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
            Q  TG   +D  +  L   G+MHN +RM  AS         W    ++  S LLDGDLA
Sbjct: 110 IQAKTGIEAVDQGILDLYQTGYMHNHMRMYVASICCNIANSHWLNPAKWMYSHLLDGDLA 169

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFD--PQGTFIRHWLPELNNVPTQYIHAPH 444
           SN+  WQW A   ++      + N     K F+   +GTF+     E + + T     P 
Sbjct: 170 SNHLSWQWVAGAFSNKK---YLANQENINKYFNSEQKGTFLDVAYHEFDELKT-----PE 221

Query: 445 SWLDKNDLSLNYPLPIVD 462
             L   + +    LP +D
Sbjct: 222 LLLQTEEFTTKTTLPSID 239


>gi|297184363|gb|ADI20479.1| deoxyribodipyrimidine photolyase [uncultured alpha proteobacterium
           EB080_L58F04]
          Length = 278

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 89/223 (39%), Gaps = 15/223 (6%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNR 262
           +           LR F       Y   R+     G     S LSPYL       R+    
Sbjct: 10  LMAPTRAAGEATLRAFAPRMGKGYTNGRNHDRGAGKHRDVSMLSPYLR------RRLVME 63

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
                  +L     GA  ++ E+IWR +++  M   P V          + +  ++D  L
Sbjct: 64  QDAVATAVLEHGAEGAEKFIQEVIWRGYFKGWMERRPVVWDQYREGLMRDLMALDRDRGL 123

Query: 323 LQAWKQG---YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
            +  +      TG    D    +L   G++HN  RM  AS  +  L + WR+G ++F   
Sbjct: 124 RRRVESAEAYQTGLDYFDNWAEELVETGYLHNHARMWFASIWIFTLELPWRLGADFFYRH 183

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQG-KRFDP 420
           LLDGD ASN  GW+W A       PY+ R +N      KRF+P
Sbjct: 184 LLDGDPASNTLGWRWVAGLHTRGKPYYARAWNIAKFTDKRFNP 226


>gi|222525279|ref|YP_002569750.1| putative deoxyribodipyrimidine photolyase [Chloroflexus sp.
           Y-400-fl]
 gi|222449158|gb|ACM53424.1| putative deoxyribodipyrimidine photolyase [Chloroflexus sp.
           Y-400-fl]
          Length = 271

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 7/188 (3%)

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
           ++Y   R+    +G S LSPYL  G+LS  +  + +   F             ++NEL W
Sbjct: 51  HHYARTRNDVVQRGVSMLSPYLRHGMLSLAEVRDSILGRF-----GITPDTEKFVNELAW 105

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R F++ + A               +     +   L        TG   ID ++R+L T+G
Sbjct: 106 RAFWQLVYAHLGDRIHHDIEPAKHKARVPRR--RLPPDVTAATTGLVCIDESLRELYTVG 163

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +MHN  RM  A++L+  L VDWR G + F   LLDGD ASN+  WQW  ST +     F 
Sbjct: 164 YMHNHARMWVAAYLIHWLGVDWREGADLFYRHLLDGDPASNSLSWQWVNSTFSHKPYIFN 223

Query: 408 IFNPTIQG 415
             N     
Sbjct: 224 RQNVERFS 231


>gi|226479206|emb|CAX73098.1| photorepair [Schistosoma japonicum]
          Length = 530

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 141/439 (32%), Gaps = 44/439 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + +   M V L W+  D R+ DN A   A   +    + + +      +    + R   F
Sbjct: 63  LTSDIKMGV-LYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCFVPKYQAETLRHYTF 121

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDS-----------------------IEWLDSY 97
           +   L +V+K   +  I F     ++  D+                        + + S 
Sbjct: 122 MIEGLKEVEKECRELCIPFHITSATSIPDNKLIKTGIKRKLSESINDYYADKVAQSILSV 181

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
                ++ +  +           K L + L   +     D   ++P     +H     + 
Sbjct: 182 IQSANISCIITDFSPLREPSSWIKGLSEVLPENIPFCQVDAHNIVPVWHASDHLEYAART 241

Query: 158 YTPFRKALIQNLVQ--ADLRSLPVPAIRLTGPVTPSNIPRFF--DYPFQAIDPMFPIGEQ 213
             P        L+     L   P        P+        F  D   + +D + P G  
Sbjct: 242 IRPSLHQKANTLMTEFPPLIKHPCYHQYDLPPIDWDYWMSEFSGDISVKPVDWIIP-GTN 300

Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
           + L  L KF  E++  Y + R+ P     S LSP+   G ++P++    +K        K
Sbjct: 301 SGLTTLHKFIHERLSKYADCRNDPTKNCLSDLSPWFHYGQVAPQRALIEVKL----WRHK 356

Query: 274 PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEK--IEWNKDSHLLQAWKQ-- 328
            K    +++ E  I RE   +   + P     +    W +    +   D       ++  
Sbjct: 357 YKDSVDAFVEEAFIRRELSDNFCYYNPKYDSMEGAWKWAQDTLTQHAHDKRNPSYSEETM 416

Query: 329 --GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG---EEYFMSQLL-D 382
               T   + +AA RQL   G +H  LRM  A  +++              Y       D
Sbjct: 417 VSADTKDDLWNAAQRQLVRTGKLHGFLRMYWAKKILEWHEDGPSAALKLAFYLNDHFALD 476

Query: 383 GDLASNNGGWQWAASTGND 401
           G   +   G  W+    +D
Sbjct: 477 GSDPNGFVGVMWSICGVHD 495


>gi|254449813|ref|ZP_05063250.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
 gi|198264219|gb|EDY88489.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
          Length = 405

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 89/218 (40%), Gaps = 15/218 (6%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEF 267
              AL  ++ F       Y   R+     G     S LSPY+   +L  R+         
Sbjct: 8   RSAALGAMQAFVPAMGKKYENGRNYDHGAGQHTAVSVLSPYICRRLLCEREVVAAA---- 63

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
             L +     A +++ E++WR +++  +   P V          +     +D  L +  +
Sbjct: 64  --LAVHGPDDARAFIEEVVWRGYFKGWLERRPQVWASYVSGLNADLESLKRDRQLRRDVE 121

Query: 328 QGYTG---FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
              TG       D    +L   G++HN  RM  AS  +  L + WR+G ++F   LLDGD
Sbjct: 122 LAETGQSGLGYFDTWAHELVNTGYLHNHARMWFASIWIFTLGLPWRLGADFFYRHLLDGD 181

Query: 385 LASNNGGWQWAASTGNDSVPYF-RIFNP-TIQGKRFDP 420
            A+N   W+WAA       PY  R  N  T  G RF+P
Sbjct: 182 AAANTLNWRWAAGLHTRGKPYPARAENIATFTGGRFNP 219


>gi|126696885|ref|YP_001091771.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9301]
 gi|126543928|gb|ABO18170.1| DNA photolyase-like protein [Prochlorococcus marinus str. MIT 9301]
          Length = 382

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 15/195 (7%)

Query: 215 ALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           A +    F K K+  Y + R+           S+LSP+++  +LS  +  + +K ++   
Sbjct: 7   AQNTWENFAKYKINDYAKLRNFDFGPNNESSVSKLSPFITHRILSEYELIHDIKSKYK-- 64

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
                  +  ++ E+ WR +++  M   P V   + FI        + D  L ++   G 
Sbjct: 65  ----IKNSTKFVEEIFWRVYWKGWMENRPKVW--RNFISENNL---DFDYELYESAINGN 115

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           T     ++ + +L    ++HN  RM  AS  + +L + W++G ++F   L DGD +SN  
Sbjct: 116 TELDYFNSWVHELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDASSNLL 175

Query: 391 GWQWAASTGNDSVPY 405
            W+W          Y
Sbjct: 176 SWRWVGGLQTKGKQY 190


>gi|123969094|ref|YP_001009952.1| DNA photolyase-like protein [Prochlorococcus marinus str. AS9601]
 gi|123199204|gb|ABM70845.1| DNA photolyase-like protein [Prochlorococcus marinus str. AS9601]
          Length = 384

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 18/231 (7%)

Query: 215 ALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           A +    F K K+  Y + R+           S+LSP+++  +LS     + +K ++   
Sbjct: 7   AQNTWENFAKYKINDYAKLRNFDFGPNNESSVSKLSPFITHRILSEYDLIHDIKSKYK-- 64

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
                  +  ++ E+ WR +++  M   P V   + FI        + D  L +    G 
Sbjct: 65  ----IKNSTKFVEEIFWRVYWKGWMENRPKVW--RNFISENNL---DFDYELYENAINGN 115

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           T     ++ + +L    ++HN  RM  AS  + +L + W++G ++F   L DGD +SN  
Sbjct: 116 TELDFFNSWVHELKQYNYLHNHTRMWFASTWIFNLGLPWQLGAKFFFKYLFDGDASSNLL 175

Query: 391 GWQWAASTGNDSVPY-FRIFNPTIQG-KRFDPQGTFIRH-WLPELNNVPTQ 438
            W+W          Y F   N       RF+ +    +  +L E N +P +
Sbjct: 176 SWRWVGGLQTKGKQYLFSSSNLRKFSNNRFNVEKISNQQIFLEESNQIPFE 226


>gi|167919770|ref|ZP_02506861.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BCC215]
          Length = 176

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 82/179 (45%), Gaps = 7/179 (3%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    ++L                D  + + S+        ++++R+Y +     D
Sbjct: 59  LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A     P
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAP 173


>gi|260436077|ref|ZP_05790047.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp.
           WH 8109]
 gi|260413951|gb|EEX07247.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp.
           WH 8109]
          Length = 303

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 89/216 (41%), Gaps = 9/216 (4%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
             +        G + A   LR+     V +Y + R+       + LSPY+  GVL+  + 
Sbjct: 33  GAEGELSPIRGGREAAKDKLRRI---DVRHYAKSRNHLKG-AVTGLSPYIRHGVLTLAEV 88

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
            + +     +     K      +NEL WR+F++ +                T        
Sbjct: 89  RDSVFARIRNRDEGGK-----LINELGWRDFWQRMWLDLGDAINNDQEPFKTGHDAGAYA 143

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
             L    + G TG   +D    QL T GW+HN  RM  A++LV    V W+ G ++F+  
Sbjct: 144 RELPADVRAGSTGLACMDGFRDQLVTTGWLHNHARMWMAAWLVHWRRVHWKAGADWFLEH 203

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           LLDGD ASN+  WQW AST +    +F   N     
Sbjct: 204 LLDGDPASNHLSWQWVASTFSHKPYFFNRGNLERYS 239


>gi|197105770|ref|YP_002131147.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium
           zucineum HLK1]
 gi|196479190|gb|ACG78718.1| deoxyribodipyrimidine photolyase - classI [Phenylobacterium
           zucineum HLK1]
          Length = 455

 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 84/441 (19%), Positives = 141/441 (31%), Gaps = 42/441 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  A   ++A  + + +           +AR   F+   L +V++
Sbjct: 23  LYWMQQSQRAGGNPALEYAVEQANALKLPLLV-CFGLAAFPEANARHYDFMLRGLAEVER 81

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L+ +GI F   +    +   E      L          R Y    +R  +   +RL   
Sbjct: 82  ALAARGIGFVIRKRPPHELVRELAADAALVVAD------RGY----LRIQRAWRERLAEG 131

Query: 131 VI--CKSFDDSVLLPPGSILNHALQMYKVYTPFRKA-LIQNLVQADLRSLPVPAIRLTGP 187
           +       +  V++P  +  N      +   P         L     R +  PA+ L   
Sbjct: 132 LARRLVQVEGDVVVPVEAASNKHEYAARTIRPKLHRLWDDYLHPLAERPVNHPALGLRVA 191

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC------KEKVYYYVEQRDIPAIQG 241
                           ID   P   + A                 +  Y   R  P    
Sbjct: 192 GDVDLSKVDAVLAGLKIDRSVPPVRRFAAGEGAARAALAAFLDRGLARYEADRSRPEAGA 251

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPS 300
            S LSPYL  G +SP +    ++E  V       SG  ++L ELI  RE   +     P+
Sbjct: 252 VSHLSPYLHFGQISPVEIALAVREAGV------VSGVATYLEELIVRRELAMNHAFQAPA 305

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQA------WKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               +    W  +   +  S           ++   T     +AAM ++   G+MHNRLR
Sbjct: 306 YDRYEVLPEWARQTLADHASDPRPHLYTRDQFEAAETHDSYWNAAMLEMRATGYMHNRLR 365

Query: 355 MITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNP 411
           M     ++         W           LDG   ++     W     +       +F  
Sbjct: 366 MYWGKKILHWSASPEEAWETALALNNRWFLDGRDPNSFTNVGWLFGLHDRPWGPQPVFGT 425

Query: 412 TIQG-----KRFDPQGTFIRH 427
                    K+FD +  ++R 
Sbjct: 426 VRSMGPNTFKKFDAEA-YVRQ 445


>gi|330814279|ref|YP_004358518.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487374|gb|AEA81779.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 382

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 83/202 (41%), Gaps = 20/202 (9%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVL----SPRQCWNRL 263
              AL  L  F    +  Y  +R+          TS LS Y+S  ++    + R  +++L
Sbjct: 4   RDEALSRLENFSNNNLGKYAAERNFDPGPVNRNNTSLLSQYISHRIIDEQETIRSAYSKL 63

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
                     P      ++ E+ WR +++  +   P V     +    + +     S   
Sbjct: 64  ----------PFKKIEKFVQEVFWRTYWKGWLEMRPQVWDD--YNHDLKNLHNELTSSNY 111

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +   +G T    ++  + +L   G++HN  RM  AS  +  L + W++G  +F+  LLDG
Sbjct: 112 KEAIEGNTKISCLNDWVLELKEFGYLHNHARMWFASIWIFTLGLPWQLGANFFLKHLLDG 171

Query: 384 DLASNNGGWQWAASTGNDSVPY 405
           D ASN  GW+W A        Y
Sbjct: 172 DPASNTLGWRWVAGLHTKGKHY 193


>gi|307110914|gb|EFN59149.1| hypothetical protein CHLNCDRAFT_56756 [Chlorella variabilis]
          Length = 444

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 114/323 (35%), Gaps = 34/323 (10%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYA 63
             +VW R DLR+ DN+AL  A     + ++ V+   P ++ +           ++ F+  
Sbjct: 109 PGIVWFRGDLRLHDNEALARAQAEC-SSLLPVYCFDPREYGKSPQGYDKTGPYRAQFLAE 167

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-RRDKL 122
           ++  ++ +L   G               E +     +     ++ + +    ++     +
Sbjct: 168 AVADLRAALRAAGSELVVR----VGRPEEVVGELVRRTGAGAVYCHTEVAYEDLRAEAAV 223

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPA 181
                      +++  + L     +     Q+ + +  FR+ +    V+A L +   +  
Sbjct: 224 RAAAEAGGARLRAYWANTLCHLDDLPFSLDQLPQNFDKFREQIGGVAVRAALPAPQELHG 283

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFP-----------IGEQNALHILRKFCKEKVYYY 230
           + L G V P +IP       Q +                 GE  AL  L++F        
Sbjct: 284 LPLGGRVDPGDIPTLEQLGLQPLPAAAATGSIGEGGSPRGGEGEALRQLQRFVAAAGGQA 343

Query: 231 VEQRDIPAI--QGTSQLSPYLSIGVLSPRQCWNRLKE--------EFVDLLIKPKSGAFS 280
                  A     ++ ++P+L+ G LSPR+     +                +P      
Sbjct: 344 AAGPVAAAHGSNFSANIAPWLATGCLSPRRMLEDARRALAAPTAAGATPAASRPLQAPLE 403

Query: 281 WLN-ELIWREFYRHLMAFYPSVC 302
           W+  EL WR+F+R L   Y S+ 
Sbjct: 404 WVRFELYWRDFFRLLSRKYSSIS 426


>gi|256077044|ref|XP_002574818.1| DNA photolyase [Schistosoma mansoni]
 gi|238660033|emb|CAZ31051.1| DNA photolyase, putative [Schistosoma mansoni]
          Length = 533

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 138/442 (31%), Gaps = 47/442 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           +K+   M V L W+  D R+ DN A   A   +    + + +      +    + R   F
Sbjct: 63  LKSGNKMGV-LYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCLVPKFQAETLRHYTF 121

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCS--------------------------NFDDSIEWL 94
           +   L +V+K   +  I F                                + D   + +
Sbjct: 122 MVEGLKEVEKECRELCIPFHITSAITNSSSNNQPVKTGVKRKLPESVNDYCHADTVAQSV 181

Query: 95  DSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQM 154
            S      ++ +  +           K L + L   +     D   ++P     +H    
Sbjct: 182 LSLIQSVNISCIITDFFPLREPTAWIKQLAELLPENIPFCQVDAHNVVPVWHASDHLEYA 241

Query: 155 YKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTGPVTPSNIPRFF--DYPFQAIDPMFPI 210
            +   P       NL+     L   P        P+  +     F  D   + +D   P 
Sbjct: 242 ARTIRPKLHQKANNLMTEFPPLIRHPYCHQSSLSPIDWNYWISKFSGDLSVKPVDWAIP- 300

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           G    L  L  F  E++  Y + R+ P     S LSP+   G ++P++    +K      
Sbjct: 301 GTSGGLTTLHTFIYERLPKYADCRNDPTKNCLSNLSPWFHYGQIAPQRAIMEVKL----W 356

Query: 271 LIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWK 327
             K K    +++ E  I RE   +   + P     +    W +    +   D       +
Sbjct: 357 RHKYKDSVDAFVEEAFIRRELSDNFCYYNPKYDSIEGAWKWAQDTLAQHAHDKRNPSYSE 416

Query: 328 Q----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG---EEYFMSQL 380
           +      T   + +AA  QL   G +H  LRM  A  +++              Y     
Sbjct: 417 EIMISAETKDDLWNAAQHQLVRSGKLHGFLRMYWAKKILEWHESGPSAALKLALYLNDHY 476

Query: 381 L-DGDLASNNGGWQWAASTGND 401
             DG   +   G  W+    +D
Sbjct: 477 ALDGSDPNGFVGVMWSICGVHD 498


>gi|254431208|ref|ZP_05044911.1| probable deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
 gi|197625661|gb|EDY38220.1| probable deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
          Length = 440

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 83/223 (37%), Gaps = 11/223 (4%)

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
           +        G   A   L          Y   R+       + LSPY+  GVLS  +  +
Sbjct: 22  EGDPSPIQGGVAAARQRLAAI---DPIAYGCSRNHLDG-AVTGLSPYIRHGVLSLAEVRD 77

Query: 262 RLKEEFVDL-------LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
            +                + +  A   +NEL WR++++ L                T   
Sbjct: 78  AVFGWLRQRGYGEPGRRAEAQQLAGKLINELGWRDYWQRLWRLLGDGIWHDLEPLRTGHP 137

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                + L     +  TG   IDA   +L T GW+HN  RM  AS++V    V W+ G  
Sbjct: 138 AEAYAAELPPDITEARTGLACIDAFAAELRTSGWLHNHARMWLASYVVHWRRVRWQAGAR 197

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
           +F+  LLDGD ASNN  WQW AS+ +     F   N       
Sbjct: 198 WFLQHLLDGDPASNNLSWQWVASSFSSKPYIFSRANLERYAGD 240



 Score = 36.9 bits (84), Expect = 7.0,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 18/123 (14%)

Query: 23  NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82
           N AL      S     A+F+         G+S ++  F+   L ++              
Sbjct: 316 NPAL-----RSWPSAPALFVFDDALITSAGLSRKRLLFLQECLQEL---------PVTVR 361

Query: 83  QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL 142
           +     D  E L ++  +     +  +   +    R  + LE RL  +V+      S+  
Sbjct: 362 RG----DGAEQLLAFAAEHGADGVVTSAAVDPRFARIRERLEPRLPVQVLEPEPFVSLET 417

Query: 143 PPG 145
           PP 
Sbjct: 418 PPD 420


>gi|78183829|ref|YP_376263.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
 gi|78168123|gb|ABB25220.1| Deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp.
           CC9902]
          Length = 298

 Score =  117 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 13/249 (5%)

Query: 172 ADLRSLPVPAIRLTGPVTP-SNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKV 227
               + P  A  L   ++    +    +  F            G + A   +R   K  V
Sbjct: 1   MPAPASPPIAGDLPRDISSREALNTLLEQEFPEASGAISPIRGGRRAAEKQIR---KMDV 57

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
             Y   R+       ++LSPY+  GV +  +  + + +      I  +      +NEL W
Sbjct: 58  KRYARSRNHVNG-AVTRLSPYIRHGVFTLAEVRDAVFQ-----GISKRDDGSKLINELGW 111

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R+F++ +                T     +    L    + G TG   +D    +L + G
Sbjct: 112 RDFWQRMWQDLGDRIDDDQEAFKTGHSAASYSRELPDDVRDGCTGLACMDGFREELVSTG 171

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+HN  RM  A++LV    V W+ G ++F+  LLDGD ASN+  WQW AST +    +F 
Sbjct: 172 WLHNHARMWMAAWLVHWRHVHWKAGADWFLEHLLDGDPASNHLSWQWIASTFSHKPYFFN 231

Query: 408 IFNPTIQGK 416
             N     +
Sbjct: 232 RDNLERYSE 240


>gi|116750550|ref|YP_847237.1| DNA photolyase, FAD-binding [Syntrophobacter fumaroxidans MPOB]
 gi|116699614|gb|ABK18802.1| Deoxyribodipyrimidine photo-lyase type II [Syntrophobacter
           fumaroxidans MPOB]
          Length = 468

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 74/461 (16%), Positives = 141/461 (30%), Gaps = 52/461 (11%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDA---KVIAVFIATPEQWRQHGISARQSHF 60
            +  +  L W++   R   N AL  A H +++    ++ VF  T +       + R   F
Sbjct: 19  RSKGAYVLYWMQQSQRSEFNHALEYAAHRANSLRQPLVVVFGLTGDYPEA---NLRHYTF 75

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L +   SL  +GI       S  D ++              L  +R Y      R 
Sbjct: 76  MLEGLEETGASLQARGIKLVVMHASPPDAALAAASEASF------LVCDRGY-----MRH 124

Query: 121 KLLEKRLQHRVICK---SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           + L +              +   ++P  +  + A    +   P R          +    
Sbjct: 125 QALWRAAVAAAAPCPVVQVEADAIVPVETASSKAEYAARTLRP-RVHTHARSFLTEPAPA 183

Query: 178 PVPAIRLTGPVTPSNIPRFF--------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
            +    L   +   ++            D    ++   +  G   A  +   F ++ +  
Sbjct: 184 ELRKSSLDADLNGMDVTDTARVLRKLRADRSVPSVTRYYRGGTSRAKELFETFLRDDIGR 243

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y E R+ P     S +S YL  G +SP     RL E   +   +  +     L       
Sbjct: 244 YTEDRNQPHAGAVSHMSMYLHFGQISPVYLALRLGEVGRERDTQKAAFLEQLLVRRELAL 303

Query: 290 FYRHLMAFY------PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            + H    Y      P            ++ E+      L+      T     +AAM ++
Sbjct: 304 NFVHHTRNYDSYECLPRWARETLARHRKDRREFRYGRQELENL---RTHDEYWNAAMTEM 360

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGN 400
              G+MHN +RM     +++         +          LDG   ++  G  W     +
Sbjct: 361 KFTGYMHNHMRMYWGKKILEWSETPEEAFQTILALNNKYFLDGRDPNSYAGAGWVLGLHD 420

Query: 401 DSVPYFRIFNPTIQ------GKRFDPQGTFIRHWLPELNNV 435
                  IF            ++ D     I+ ++ E+  +
Sbjct: 421 RPWKERPIFGTVRYMAASGLERKCD-----IKGYVEEMKRL 456


>gi|145353298|ref|XP_001420955.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357465|ref|XP_001422939.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581191|gb|ABO99248.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583183|gb|ABP01298.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 477

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 146/418 (34%), Gaps = 33/418 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYAS 64
              + W   D R  +N AL  A   ++ + + + +      +        AR++ F    
Sbjct: 26  GPVVYWCDRDRRCANNDALGRAMELANERRVPLVVAMHVGTDLSGSGIGGARRAVFALKG 85

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L ++ + L  +G+  +    S+    I      C     + +  +           + + 
Sbjct: 86  LKELDEDLRARGVSTRTTTGSDVAGGI---VETCETLNASAVVCDFSPLREGRAAREAVA 142

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           + ++  VI    D   ++P     +      +   P     + + + A      + A   
Sbjct: 143 RVVEVPVI--EVDAHNVVPAWVTSDKQEYAARTIRPKIHRNLGDFLTAPQALDDLIAAPD 200

Query: 185 TGPVTPSNIPRFFDYPFQAID-----PMFPIGEQNALHIL-----RKFCKEKVYYYVEQR 234
               + ++     D                 GE+ AL  L       F  +++  Y E R
Sbjct: 201 ALTPSETDWDALIDTARVKGAHVPEVDWIKPGERAALAALLDPNVDSFLPQRLTLYGE-R 259

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYR 292
           + P      S+LSPYL+ G LSPR+      +      I       S+L ELI  RE   
Sbjct: 260 NKPTSPRAVSRLSPYLNHGQLSPRRAAWEAAQL---RGIVDDEAIDSYLEELIVRRELSD 316

Query: 293 HLMAFYPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           +   F P     +    W +        +  +  +  +  ++G T   + +AA ++L  +
Sbjct: 317 NYCLFNPYYDSLQGASQWAQDSLSLHARDVREYVYDYKTLERGNTHDELWNAAQKELYHL 376

Query: 347 GWMHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           G MH  +RM  A  +++      V  +   +   +  LDG   +   G  W+ +  +D
Sbjct: 377 GRMHGFMRMYWAKKILEWTPSPEVALQTAIQLNDAYALDGLDPNGYVGCMWSIAGVHD 434


>gi|295113007|emb|CBL31644.1| Deoxyribodipyrimidine photolyase [Enterococcus sp. 7L76]
          Length = 111

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 53/107 (49%), Positives = 66/107 (61%), Gaps = 6/107 (5%)

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQ 438
            L+D D A+N GGWQWAASTG D+VPYFRIFNP IQ K+FD  G FI+ ++PEL  VP +
Sbjct: 1   MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFDNDGQFIKKYVPELKQVPQK 60

Query: 439 YIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           YIH P+   +         L  NYP PIVD+  + +        AKK
Sbjct: 61  YIHQPNLMNEALQTQYHVHLGENYPKPIVDYASSKNKHCFYMKRAKK 107


>gi|9633763|ref|NP_051841.1| m127L [Myxoma virus]
 gi|6523982|gb|AAF15015.1|AF170726_131 m127L [Myxoma virus]
 gi|170664593|gb|ACB28750.1| m127L [Myxoma virus]
 gi|170664766|gb|ACB28922.1| m127L [recombinant virus 6918VP60-T2]
 gi|301134653|gb|ADK63767.1| m127L [Myxoma virus]
          Length = 445

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 131/407 (32%), Gaps = 17/407 (4%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           S  + W+  + RI DN  LY A   +    + +++        H  ++R   F+   L  
Sbjct: 18  SSVVYWMYREHRIRDNWGLYYAQQKAIRHAVPLYVCVC-LTSFHLTTSRHVTFLLEGLRD 76

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKR 126
           V+    ++   F       +      L     ++    +F +     + E     ++E  
Sbjct: 77  VEDECVKRSFGFVVR----YGRPEVVLPEEVKKRNARWVFVDFYPLRVPEKDISNVVES- 131

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           L+        D   ++P     +      + +    + L+   +     ++      +  
Sbjct: 132 LKDVATVIQVDSHNIVPCWITSSKQEYSARTFRLKIQKLLTTYL-TKFPNIGKHPYPVQD 190

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                  P   D P          G +  L  LR F K  + YY   ++ P  +  S LS
Sbjct: 191 VYVEDYTPVLDDVP---PIRDIKAGTKEGLKTLRAFLKHTLRYYYAFKNDPTARACSGLS 247

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKP 306
           P+L  G LS ++                 +     +      + + +    Y S+    P
Sbjct: 248 PWLHYGHLSAQRVVLDTVVYASIYPASVAAFLDEIVVRRELSDNFCYYNKRYDSITSTHP 307

Query: 307 F-IPWTEKIEWNKDSHLLQAW--KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF--- 360
           + +   ++   +   +L   +  +   T  P+ +AA  Q+   G MH  LRM  A     
Sbjct: 308 WALRTLDEHRRDTRPYLYDTYSLEHARTHDPLWNAAQLQMVREGKMHGYLRMYWAKKILE 367

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
             +       +         LDG   +   G  WA +  +D     R
Sbjct: 368 WSETPESALSVCIYLNDKYELDGTDPNGYVGCLWAVAGLHDRAWKER 414


>gi|296120560|ref|YP_003628338.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
           3776]
 gi|296012900|gb|ADG66139.1| DNA photolyase FAD-binding protein [Planctomyces limnophilus DSM
           3776]
          Length = 843

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 143/459 (31%), Gaps = 54/459 (11%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           ATT     L W+ + LR  +N AL  A H +      + +           + R+  FI 
Sbjct: 40  ATTHGDFVLYWMHHSLRGHENPALDVAIHLAHWLEKPLLVYQGLSEDHPYANDRRHTFIL 99

Query: 63  ASLLQVQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
                V   L+++ I  V    +  +    ++ L ++        L  +       +   
Sbjct: 100 QGARDVHAELAEQKISSVLHVARAEDRGPHLKTLAAH-----AAVLVTDDVPTAPTIHWR 154

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             L   ++  ++C   + + ++PP  +       +     +R+A        + R  PV 
Sbjct: 155 NRLAASIKTPIVC--VNGACIVPPQLVKR----AFDRAFAYREATAWLYKTRNTRPWPVL 208

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFP---------------IGEQNALHILRKFCKE 225
                         +  D    +I  +                  G Q        F K+
Sbjct: 209 RYAGKPFPLDQRPFQSVDLQQTSIADLLAISQIDHSVGPVQHTVGGSQAGYTRWENFKKQ 268

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE- 284
            +  Y +QR+     G S++S YL  G++SP            D      + A  +L+E 
Sbjct: 269 GLRRYADQRNDALKDGVSRMSAYLHYGMVSPFTLV-------RDCFEVGGASAEKYLDEL 321

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEK---------IEWNKDSHLLQAWKQGYTGFPI 335
           LIWRE       +            W  +              D   L    +  T  P+
Sbjct: 322 LIWRELAWCFCHYRTDHEALSALPTWARQALKAGEADTRPALYDEETL---ARAQTHDPL 378

Query: 336 IDAAMRQLNTIGWMHNRLRMITAS---FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
            +AA   L   G +HN +RM          +      R+  +      LDG   ++ GG 
Sbjct: 379 WNAAQMSLLRQGELHNNVRMTWGKAIPLWTRTTEEALRLLFDLNHRYALDGCDPASYGGL 438

Query: 393 QWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
            W     +     F    P ++  R        R   PE
Sbjct: 439 LWCLGQFDRP---FTPEEPILRSIRGRSTAEHARRLNPE 474


>gi|238612106|ref|XP_002398132.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553]
 gi|215474046|gb|EEB99062.1| hypothetical protein MPER_01320 [Moniliophthora perniciosa FA553]
          Length = 228

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 5/200 (2%)

Query: 2   KATTAMSVHLVWLRN-DLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQ 57
           K        + W+R  DLRI+DN+AL  A   +   +  ++ +F+ +P+ +  H   AR+
Sbjct: 29  KNPNKGECVVYWMRMADLRISDNRALSLASAQAKEENIPLVVIFVISPQDYIAHDRGARR 88

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             F   +L  V+ SL++  I          ++    + S+         + N +YE++E+
Sbjct: 89  IDFTLRNLFCVKDSLAKLPIPLHTFTEQTGENYRRPVISFLQDYSCNSFYANIEYEVDEL 148

Query: 118 RRDKLLEKRLQHRVICKSF-DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           RRD  +    + + +   F  +  ++ PG +   A + Y VY+PF +  I  L +     
Sbjct: 149 RRDLKVCALAKSKGMKAMFVHNKCIIEPGVVTTKANKAYAVYSPFERTWISKLNENQDSY 208

Query: 177 LPVPAIRLTGPVTPSNIPRF 196
           L           +     RF
Sbjct: 209 LQEYLAPEPNASSIKKSKRF 228


>gi|9633937|ref|NP_052016.1| gp127L [Rabbit fibroma virus]
 gi|6578656|gb|AAF18010.1|AF170722_128 gp127L [Rabbit fibroma virus]
          Length = 445

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 132/414 (31%), Gaps = 31/414 (7%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVF---IATPEQWRQHGISARQSHFIYAS 64
           S  + W+  + RI DN  LY A   +    + ++     TP     H  ++R   F+   
Sbjct: 18  SSVVYWMYREHRIRDNWGLYYAQQKALRYRVPLYVCVCLTPF----HLTTSRHMAFLLEG 73

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L +V+    ++   F       +    + L     +     +F +        +    + 
Sbjct: 74  LREVEDECVKRSFGFVLR----YGCPKDVLPEEVKKHNARWIFVDFYPLRYPEKDISDVV 129

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             L+        D   ++P       +L+       FR  + + L     +    P++  
Sbjct: 130 TALRDVATIIQVDSHNIVPCWI---ASLKQEYSARTFRLKIQKLLTTYLTK---FPSVIK 183

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM--FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
                       F      + P+     G +  +  LR F K K+ YY E ++ P +   
Sbjct: 184 HPYPVQDVYVEDFTPTLDDVSPIRGITAGNKGGMRKLRAFLKHKLRYYHEFKNDPTVDAC 243

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSP+L  G LS ++                 +     +      + + +    Y S+ 
Sbjct: 244 SGLSPWLRYGHLSAQRVVLETVAYTSTYPESVATFLDEIVVRRELSDNFCYYNKLYDSIT 303

Query: 303 MGKPF------IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
              P+          +   +  D+  L   +   T  P+ + A  Q+   G MH  LRM 
Sbjct: 304 STHPWALRTLDDHRQDLRPYLYDTSSL---EHARTHDPLWNTAQLQMINEGKMHGYLRMY 360

Query: 357 TASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
            A       K       +         LDG   +   G  WA +  +D     R
Sbjct: 361 WAKKILEWSKTPESALSVCIYLNDKYELDGTDPNGYVGCLWAVAGLHDRAWKER 414


>gi|78211770|ref|YP_380549.1| deoxyribodipyrimidine photo-lyase family protein [Synechococcus sp.
           CC9605]
 gi|78196229|gb|ABB33994.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp.
           CC9605]
          Length = 303

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 58/217 (26%), Positives = 89/217 (41%), Gaps = 9/217 (4%)

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
             +        G   A   LR+    +   Y + R+       + LSPY+  GVL+  + 
Sbjct: 33  GAEGELSPIRGGRVPAEEKLRRIDARR---YAKSRNHLRG-AVTGLSPYIRHGVLTLAEV 88

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
            + + E   +     K      +NEL WR+F++ +                T        
Sbjct: 89  RDSVFERIRNRDEGGK-----LINELGWRDFWQRMWLDLGDGIHDDQEPFKTGHDAGAYA 143

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
             L    + G TG   +D    QL + GW+HN  RM  A++LV    V W+ G ++F+  
Sbjct: 144 QELPADVRAGTTGLACMDGFRDQLVSTGWLHNHARMWMAAWLVHWRRVHWKAGADWFLEH 203

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
           LLDGD ASN+  WQW AST +    +F   N     +
Sbjct: 204 LLDGDPASNHLSWQWVASTFSHKPYFFNRGNLERYSE 240


>gi|239905196|ref|YP_002951935.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio magneticus RS-1]
 gi|239795060|dbj|BAH74049.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio magneticus RS-1]
          Length = 449

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 136/443 (30%), Gaps = 32/443 (7%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
                + W+  D R  DN AL AA   +      + +A        G S R   F+   L
Sbjct: 17  RAGPVVYWMSRDQRAEDNWALLAAADLARETGAPLHVAFALAPGYPGASLRHYDFMLRGL 76

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
            + + +L  +G+ F          + E+L +      VT        + + +R   L ++
Sbjct: 77  AETEAALRARGVPFHLLLGDPAAVAPEFLRAIAAGACVT--------DFDPMRVKTLWKR 128

Query: 126 RLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +           D   ++P              + P     +Q  ++        P + 
Sbjct: 129 AVAEAFAGPLLEVDAHNVVPCVVASPRREYAAATFRPKIHKRLQEFLEPFPELPAFPDVA 188

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP---IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
           L                  A     P    G   A   L  F  E++  Y  +R+ P   
Sbjct: 189 LVATPPVDWGAARASLSVDAFPGPVPDIVPGPAAARAALDAFTAERLPGYAARRNDPNAG 248

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS 300
             S LSPY   G L+P++    +       +    +     L      + Y H   + P+
Sbjct: 249 AVSGLSPYFHFGQLAPQRAALEVLAARAGHVADADAYLEELLVRRELSDNYCH---YTPN 305

Query: 301 VCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                    W  K       +  +  +    ++   +   + +AA R+L   G +H  +R
Sbjct: 306 YDRYDALPDWARKTLDAHAGDEREHRYTPAQFEAAASHEALWNAAQRELVATGRIHGYMR 365

Query: 355 MITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDS-------VP 404
           M  A  +++      +  +          LDG   +   G  W+    +D          
Sbjct: 366 MYWAKKILEWSPSPRQALDTALSLNDRYALDGRDPNGVVGVLWSVGGLHDRPWATRPVYG 425

Query: 405 YFRIFNPTIQGKRFDPQGTFIRH 427
             R  N     ++FD      RH
Sbjct: 426 QIRYMNERGCRRKFDANAYIARH 448


>gi|167816640|ref|ZP_02448320.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 91]
          Length = 168

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 83/174 (47%), Gaps = 7/174 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL  +  +L+  G      +    D  +    S+        ++++R+Y +     D
Sbjct: 59  LHGSLRALGAALAALGGTLALLRGDEHDTIV----SFAAALGAGAVYWSRRYALAARAVD 114

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A 
Sbjct: 115 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAP 168


>gi|304319762|ref|YP_003853405.1| DNA photolyase-like protein [Parvularcula bermudensis HTCC2503]
 gi|303298665|gb|ADM08264.1| DNA photolyase-like protein [Parvularcula bermudensis HTCC2503]
          Length = 424

 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 13/198 (6%)

Query: 230 YVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           Y + R+           S LSPYL   +++ ++        F        S A  ++ E+
Sbjct: 45  YAKNRNRDDGPADRRYVSCLSPYLRHRLITEQEVIAAALNRFA------FSTAEKFIQEV 98

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLN 344
            WR +++  +   P V             E + D     QA  +G TG    DA  ++L 
Sbjct: 99  YWRTYFKGWLERRPWVWDLYTDDRDRRLNELSGDQATAYQAAVEGRTGIDGFDAWTKELI 158

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G++HN  RM  AS  +  L + W +G ++F   LLDGD ASN   W+W          
Sbjct: 159 ATGYLHNHARMWFASIWIFTLRLPWSLGADFFHRHLLDGDAASNTLSWRWVGGLHTKGKT 218

Query: 405 YF-RIFNPT-IQGKRFDP 420
           Y  R  N       RF P
Sbjct: 219 YLARPSNIEKFTNGRFSP 236


>gi|311029788|ref|ZP_07707878.1| deoxyribodipyrimidine photolyase [Bacillus sp. m3-13]
          Length = 221

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 12/227 (5%)

Query: 7   MSVHLVWLRNDLRITDNKALYAAC---HNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
           M++ ++W R D R+ DN ALY A     + +  ++ V+   P        + R   F +A
Sbjct: 1   MTLSIMWFRRDFRLQDNAALYHAVKETQHRNEPLLLVYHLDPGFTTNDTPNHR---FFFA 57

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +L +  K   ++GI     + +  +   + L+ +     VT L+YN+       +RDK +
Sbjct: 58  ALDRFIKRCEKQGIYIHLVEGTWQEAFNQILEHFP---EVTSLYYNQDEVGAGQKRDKEV 114

Query: 124 EKRL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVP 180
           +K   +  +   S+ D  +     +      +YKV+TP+ K  +    +    L    + 
Sbjct: 115 DKFFIKRGIRVSSYIDYTIHGANEVKKPDNSIYKVFTPYFKKWMAQPKRDPYILTKEDLT 174

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
              +      S   +      +  D      E+ AL +L  F K+K 
Sbjct: 175 IENIKNDALYSKGQKVLSNLIKVSDQDIIPHEEAALEVLNLFLKKKN 221


>gi|310658527|ref|YP_003936248.1| deoxyribodipyrimidine photo-lyase [Clostridium sticklandii DSM 519]
 gi|308825305|emb|CBH21343.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
           (Photoreactivating enzyme) [Clostridium sticklandii]
          Length = 447

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 146/421 (34%), Gaps = 42/421 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R   N AL  +   S+   + + +           + R   F+   +  V  
Sbjct: 22  LYWMQASQRSEYNHALEYSIEYSNKLKLPLIVLFIIMEDFPKANFRHFRFMLEGIEDVMN 81

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L  + I     +        E        +  + L  +  Y  +E+     + ++L   
Sbjct: 82  QLKSRKIKMVIRKGEALPIVNEL------SKNASILITDFGYLKHEIIMKSNIAQQLNCS 135

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPAIRLT-GPV 188
           ++  S + +V++P     N          P    +I + L++ + R +   +I       
Sbjct: 136 ML--SVESNVIIPVEVTSNKEEYGAYTIRPKINKIIDKYLIELNSRLVMQSSIDYPIKSE 193

Query: 189 TPSNIPRFFD---YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
             S++  F D         + ++  G   A   L+ F + K  YY E ++ P +  +S L
Sbjct: 194 DISDLNSFIDSLKIDKSINESIYKGGSVEAEKYLKDFIENKAQYYSELKNHPGMNYSSNL 253

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
           SPYL  G +SP   +  LK    D+  K       +L ELI R        +Y      K
Sbjct: 254 SPYLHFGQISP--LYIALKIIKSDIKSKKD-----FLEELITRRELAINYIYY-----NK 301

Query: 306 PFIPWTEKI--EWNKDS------------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            +    EKI   W  DS            + L+  +   T     + A +++   G MH 
Sbjct: 302 NYDSDIEKILPSWAYDSLISHQNDLKDYLYSLEELENAKTHDEFWNKAQKEMVITGKMHG 361

Query: 352 RLRMITASFLVKD--LLVDWRIGEEYF-MSQLLDGDLASNNGGWQWAASTGNDSVPYFRI 408
            +RM     +++    + D      Y      +DG  A+   G  W     +       I
Sbjct: 362 YMRMYWGKKIIEWSLTINDAFSKALYLNDRYSIDGRDANGYAGIAWCYGKHDRPWKEREI 421

Query: 409 F 409
           F
Sbjct: 422 F 422


>gi|47223395|emb|CAG04256.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 136

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/100 (50%), Positives = 62/100 (62%), Gaps = 1/100 (1%)

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           L  AWK+G TG P +DA MR+L T G+M NR R   ASFL KDL +DWR+G E+F S L+
Sbjct: 3   LFDAWKEGKTGVPFVDANMRELATTGFMSNRGRQNVASFLTKDLGLDWRMGAEWFESLLV 62

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
           D D+ SN G W ++A  GND     R FN   QG  +D  
Sbjct: 63  DHDVCSNYGNWLYSAGIGNDPREN-RKFNMIKQGLDYDSN 101


>gi|306019717|gb|ADM78912.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019719|gb|ADM78913.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019721|gb|ADM78914.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019723|gb|ADM78915.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019725|gb|ADM78916.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019727|gb|ADM78917.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019729|gb|ADM78918.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019731|gb|ADM78919.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019733|gb|ADM78920.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019735|gb|ADM78921.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019737|gb|ADM78922.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019739|gb|ADM78923.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019741|gb|ADM78924.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019743|gb|ADM78925.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019745|gb|ADM78926.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019747|gb|ADM78927.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019749|gb|ADM78928.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019751|gb|ADM78929.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019753|gb|ADM78930.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019755|gb|ADM78931.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019757|gb|ADM78932.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019759|gb|ADM78933.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019761|gb|ADM78934.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019763|gb|ADM78935.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019765|gb|ADM78936.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019767|gb|ADM78937.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019769|gb|ADM78938.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019771|gb|ADM78939.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019773|gb|ADM78940.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019775|gb|ADM78941.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019777|gb|ADM78942.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019779|gb|ADM78943.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019781|gb|ADM78944.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019783|gb|ADM78945.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019785|gb|ADM78946.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019787|gb|ADM78947.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019789|gb|ADM78948.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019791|gb|ADM78949.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019793|gb|ADM78950.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019795|gb|ADM78951.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019797|gb|ADM78952.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019799|gb|ADM78953.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019801|gb|ADM78954.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019803|gb|ADM78955.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019805|gb|ADM78956.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019807|gb|ADM78957.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019809|gb|ADM78958.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019811|gb|ADM78959.1| cryptochrome 1-like protein [Picea sitchensis]
          Length = 193

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 11/197 (5%)

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
             ++  SL  +  SL   G      + +N   SI  +         T+LFYN  Y+   +
Sbjct: 1   RWWLKQSLAHLDSSLRNLGARLITKRSTN---SISAILQVVQATGATQLFYNHLYDPLSL 57

Query: 118 RRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
            RD  L++ L  R I  +SF+  +L  P  + +     +  +  +    +       L  
Sbjct: 58  VRDHKLKQDLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYD-PLAP 116

Query: 177 LPVPAIRLTGPVT--PSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYY 230
           L  P   + G V+  PS+     D   +A + +    +  G  +A   L  F    +  Y
Sbjct: 117 LLPPKRIVAGEVSNCPSDDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDY 176

Query: 231 VEQRDIPAIQGTSQLSP 247
              R       TS LSP
Sbjct: 177 AINRQKADSATTSLLSP 193


>gi|317406428|gb|EFV86641.1| hypothetical protein HMPREF0005_05613 [Achromobacter xylosoxidans
           C54]
          Length = 151

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 3/150 (2%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+WLR DLR+ DN     A   ++    A+FIA P QWR HG +  +  F   +L  + 
Sbjct: 3   TLIWLRTDLRLHDNP--ALAAAAAEGTATALFIAAPGQWRLHGDAPAKVDFWLRNLRTLS 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           + L++ GI  +      +D   + L  +C +  +T +  N ++ +NE RRD  +  RL  
Sbjct: 61  RDLARLGIPLKLLTVDTWDQVPDALPRFCREHGITAVHANTEWAVNERRRDDAVACRLAE 120

Query: 130 RVI-CKSFDDSVLLPPGSILNHALQMYKVY 158
             I       + LL PG+++      Y+VY
Sbjct: 121 AGIDWTLHHGASLLRPGTVVTGKGDCYRVY 150


>gi|149198711|ref|ZP_01875754.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera
           araneosa HTCC2155]
 gi|149138147|gb|EDM26557.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera
           araneosa HTCC2155]
          Length = 365

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 10/190 (5%)

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           K   Y + R+       S LSPY+S GV+S R  ++ L +   +L          ++ EL
Sbjct: 19  KPDLYAKTRNFLDG-TVSCLSPYISRGVISTRTVYDSLIKRGYNL-----EKIEKFVQEL 72

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WR++++    FY  + + K      +      +  +     +G     + + A++QLN+
Sbjct: 73  AWRDYWQSQWKFYG-IKINKDLRHTQQAF---HNHGMPHCLVKGQCSIQMFNTAIKQLNS 128

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G++HN +RM  A  +       W    ++    L+DGD ASN   WQW A   N     
Sbjct: 129 TGYLHNHMRMYLAMSICNIGSYHWHKPAQWMYYNLIDGDWASNALSWQWVAGCLNSKKYI 188

Query: 406 FRIFNPTIQG 415
               N     
Sbjct: 189 ANQENINKYC 198


>gi|83859814|ref|ZP_00953334.1| DNA photolyase-like protein [Oceanicaulis alexandrii HTCC2633]
 gi|83852173|gb|EAP90027.1| DNA photolyase-like protein [Oceanicaulis alexandrii HTCC2633]
          Length = 414

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 83/221 (37%), Gaps = 15/221 (6%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
              +  L  L+ F       Y  +R+           S LS ++   ++         + 
Sbjct: 15  PDRKAGLSRLKAFTPAMGRAYASERNFDLGPQDRSNISCLSAHVRHRLV------QEAEL 68

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
               L       A  ++ E+ WR +++  +    +V               ++D  L Q 
Sbjct: 69  AQAALSAHGLQAAEKFIQEVCWRTYWKGWLELRSAVWADYKAEREQAFTAVSEDQALAQR 128

Query: 326 WK---QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
           ++   +G TG    DA   +L   G++HN  RM  AS  +  L + W +G ++F+  L+D
Sbjct: 129 YEAAIEGRTGLEGFDAWATELMQTGYLHNHARMWFASIWIFTLDLPWVLGADHFLRHLID 188

Query: 383 GDLASNNGGWQWAASTGNDSVPYF-RIFNPTIQGK-RFDPQ 421
           GD ASN   W+W          Y  R  N     K RF P 
Sbjct: 189 GDAASNTLSWRWVGGLQTVGKTYLARASNIEKYTKGRFAPD 229


>gi|323228031|gb|EGA12174.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
          Length = 84

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 59/84 (70%)

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457
           TG D+ PYFRIFNPT QG+RFD  G FIR WLP L ++P + IH P  W +K  + L+YP
Sbjct: 1   TGTDAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYP 60

Query: 458 LPIVDHKKACHHTLNQYYAAKKQS 481
            PIV+HK+A   TL+ Y AA+K +
Sbjct: 61  RPIVEHKQARIATLSAYEAARKGA 84


>gi|116625724|ref|YP_827880.1| deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228886|gb|ABJ87595.1| Deoxyribodipyrimidine photo-lyase type II [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 456

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 140/425 (32%), Gaps = 51/425 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W R + R+  N AL  A   ++   + + +             R   F+   +   Q 
Sbjct: 21  LYWCRWNRRVEANHALLHAAETANRMDLPLVVYERLSCAYPTACDRFHTFVLEGVPHFQA 80

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL------- 123
            L + GI + +                            R    + V RD  +       
Sbjct: 81  QLRKLGIPYIFQLPRRKTV--------------------RDERRDAVLRDAAVVVTDDCL 120

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
               +  V  ++ D S ++P G+I   +   Y +     + L + L  A    +   +  
Sbjct: 121 RAAPRLDVRLEAVDGSCIVPVGAIPGRSYAAYSIRPRIHRLLPKYLKAAPALEIRRRSRE 180

Query: 184 ----LTGPVTPSNIPRF-----FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               L   V+  NI         D+  +A    FP G   A   L++F +E++  Y   +
Sbjct: 181 RFEDLHTEVSAPNIASLVAECEIDHGVRASTT-FPGGRMAAEAGLQRFLEERLRRYARDK 239

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           + P++  TS+LSPYL  G +   +    ++E         K  A  +L ELI R    H 
Sbjct: 240 NEPSLHATSELSPYLHYGHIGALEVALAVREHAAA----HKLIADEFLEELIVRRELAHN 295

Query: 295 MAFY-PSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIG 347
            A Y P +        W  K   +  +D+      +       T   + +A  ++L   G
Sbjct: 296 FARYAPRLDSLDVLPDWARKTIEDHRRDTRDPVYGRAEFEGAATHDDLWNATQKELVLRG 355

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVP 404
            +H   RM     +++                    LDGD  +      W     +   P
Sbjct: 356 KIHGYYRMYWGKRIIEWSPSAEEAHATMLWLHDRYALDGDDPNTYTNILWCFGLHDRPWP 415

Query: 405 YFRIF 409
              I+
Sbjct: 416 ERPIY 420


>gi|294942625|ref|XP_002783615.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
           50983]
 gi|239896117|gb|EER15411.1| Deoxyribodipyrimidine photo-lyase, putative [Perkinsus marinus ATCC
           50983]
          Length = 506

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 134/450 (29%), Gaps = 48/450 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           T+    + W+  ++R  DN AL  A      S   ++ V+          G   RQ  F 
Sbjct: 22  TSPGPVIYWMSREIRSRDNWALIHAQNVALRSKRPLLVVYNLAVGYL---GGGLRQHAFK 78

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  V  +LSQ  I F       F      L     +     +     +    + ++ 
Sbjct: 79  VGGLKVVAANLSQLNIPFAIETSPKF---PALLADITERVGCKYVVT--DFTPLRLNKEW 133

Query: 122 LL---EKRLQHRVICKSFDDSVLLPPGSILNHALQ-----MYKVYTPFRKALIQNL---- 169
           +    +   +  +  +  D   ++P     +   +       K++  F +   +      
Sbjct: 134 VAAFTKHAKRLDIRFELVDAHNVVPCWVTSDKMERAAVTIRPKLWHHFDEFCTKYPRLKR 193

Query: 170 ----VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
               +  D+    V    +   +T   I    D   + ID     GE   L +   + K 
Sbjct: 194 HAYTISDDVHFHTVTTSEIEALLTNDEIVGKLDKAVEPID-WLTPGEDAGLQLALGYVKN 252

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
               Y  QR+ P     S LSPY   G +SP++      + +    I  +         +
Sbjct: 253 LP-NYSTQRNNPTNPIQSDLSPYFHYGFVSPQRVIY---DAYNSTDINEEDRDEFIEQCM 308

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL------LQAWKQGYTGFPIIDAA 339
           I RE   +   +  +    + F  W +                L+  +   T   + +A 
Sbjct: 309 IRRELADNFCYYNDNYDKFEGFPDWGQHTLREHAKDDREYLYSLEQLENADTHDRLWNAT 368

Query: 340 MRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
            RQ+   G +H  +RM          K                 LDG   +   G  W  
Sbjct: 369 QRQMVETGKIHGYMRMYWCKKILEWTKSPEEALEFSIYLNDKYELDGRDPNGYVGIAWCI 428

Query: 397 STGNDS-------VPYFRIFNPTIQGKRFD 419
              +D            R  +      +FD
Sbjct: 429 GGRHDRPFGERNVYGVIRYMSYNGCRGKFD 458


>gi|170716940|gb|ACB32172.1| DNA photolyase [Ampelophaga rubiginosa nucleopolyhedrovirus]
          Length = 564

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 132/442 (29%), Gaps = 37/442 (8%)

Query: 11  LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A+  A          +   F  T         S RQ  F+   L  
Sbjct: 124 VYWMSRDSRVQDNWAMIYAQRLAIERQVPLHVCFCLTSSFLNA---SLRQFDFLLEGLKS 180

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD--KLLEK 125
           VQ+   +  I F     S   D    L+ +     ++ +     +    V RD    ++ 
Sbjct: 181 VQRECHELNIGFNVLDGS--GDLT--LNDWVQTNNISAVVC--DFNPLRVVRDWVTKVKS 234

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--PVPAIR 183
           +L   V     D   ++P              + P   + +   +      +  P     
Sbjct: 235 QLAPHVFFAQVDAHNIIPCWQASLKQEVYASTFRPKVLSQLDRFLTEFPAVIVHPYGKNC 294

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
               +    + +  D         +   G  +A+  L  F ++ +  Y   R+ P     
Sbjct: 295 TAADIDWHYLLQSRDANKSVSPVKWAVPGYDHAVKSLYIFIQDNLSKYASLRNNPTTTVI 354

Query: 243 SQLSPYLSIGVLSPRQCWNRLKE------EFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           S LSP+   G +S ++   ++        + VD  I          +   +       + 
Sbjct: 355 SNLSPWFHFGQISVQRVVLKILSLKSVYPDSVDRYIDEVVVRRELADNFCFYNDRYDCVE 414

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
             P            +   +  +   L       T   + ++A  QL   G MH  +RM 
Sbjct: 415 GAPQWAQETIDQHKYDHRSYIYN---LTELASCQTHDELWNSAQAQLRCEGKMHGYMRMY 471

Query: 357 TASFLVKDL---LVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV-------PYF 406
            A  +++      +             +DG   +   G  W+    +D            
Sbjct: 472 WAKKIMEWTPSAEMALGYAIFLNDHYSVDGRDPNGYVGCMWSICGVHDRPFKERKIFGRI 531

Query: 407 RIFNPTIQGKRFDPQGTFIRHW 428
           R  N     ++F+    +I  +
Sbjct: 532 RYMNYAGCKRKFNVD-LYIAKY 552


>gi|294942633|ref|XP_002783619.1| DNA photolyase FAD binding domain, putative [Perkinsus marinus ATCC
           50983]
 gi|239896121|gb|EER15415.1| DNA photolyase FAD binding domain, putative [Perkinsus marinus ATCC
           50983]
          Length = 506

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 81/454 (17%), Positives = 142/454 (31%), Gaps = 56/454 (12%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           T+    + W+  ++R  DN AL  A      S   ++ V+          G   RQ  F 
Sbjct: 22  TSPGPVIYWMSREIRSRDNWALIHAQNVALRSKRPLLVVYNLAVGYL---GGGLRQHAFK 78

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  V  +LSQ  I F       F      L     +     +     +    + ++ 
Sbjct: 79  VGGLKVVAANLSQLNIPFAIEASPKFPAF---LADITERVGCKYVVT--DFTPLRLNKEW 133

Query: 122 LL---EKRLQHRVICKSFDDSVLLPPGSILNHALQ-----MYKVYTPFRKALIQNL---- 169
           +    +   +  +  +  D   ++P     +   +       K++  F +   +      
Sbjct: 134 VAAFTKHAKRLDIRFELVDAHNVVPCWVTSDKMERAAVTIRPKLWHHFDEFCTKYPRLKR 193

Query: 170 ----VQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
               +  D+    V    +   +T   I    D   + ID     GE   L +   + K 
Sbjct: 194 HPYTISDDVHFHTVTTSEIDALLTNEEIVGKLDEAVKPID-WLTPGEDAGLQLALGYVKH 252

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
               Y  QR+ P     S LSPY   G +SP++      + +    I  +         +
Sbjct: 253 MP-NYSTQRNNPTNPIQSDLSPYFHYGFVSPQRVIY---DAYNSTDINEEDRDEFIEQCM 308

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQAWKQ---GYTGFPIIDAA 339
           I RE   +   +  +    + F  W +         D   L + +Q     T   + +A 
Sbjct: 309 IRRELADNFCYYNDNYDKFEGFPDWGQHTLREHAKDDREYLYSLEQLEKADTHDRLWNAT 368

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM-------SQLLDGDLASNNGGW 392
            RQ+   G +H  +RM    +  K +L   R  EE             LDG   +   G 
Sbjct: 369 QRQMVETGKIHGYMRM----YWCKKILEWTRSPEEALEFSIYLNDKYELDGRDPNGYVGI 424

Query: 393 QWAASTGNDS-------VPYFRIFNPTIQGKRFD 419
            W     +D            R  +      +FD
Sbjct: 425 AWCIGGRHDRPFGERNVYGVVRYMSYNGCRGKFD 458


>gi|167903518|ref|ZP_02490723.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei NCTC
           13177]
          Length = 224

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 82/179 (45%), Gaps = 7/179 (3%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 49  LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 106

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ SL    ++L                D  + + S+        ++++R+Y +     D
Sbjct: 107 LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYALAARAVD 162

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             ++  L  + I  ++F+ S+L  PG ++N   + Y+V++ + +A ++  V A     P
Sbjct: 163 NAVQTALDAQGIAVETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGVPAPPLGAP 221


>gi|32475397|ref|NP_868391.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
 gi|32445938|emb|CAD78669.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
          Length = 507

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 80/467 (17%), Positives = 141/467 (30%), Gaps = 69/467 (14%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + WL    R+  N AL  A   +      + I  P + R    S R   FI   +     
Sbjct: 26  VYWLIAQRRLHWNFALQHAIDRALEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRD--N 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +   + +   Y+        +     + L +    +  +             ++ +L  R
Sbjct: 84  AAEAESLPVVYYPYVEPKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPAR 143

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPV 188
           +      DS  + P         +   Y  F +  I   ++    + P+   + R   P 
Sbjct: 144 LELI---DSNGVLPLRAAEKTYTVAHSYRRFMQKNILPALEQLPLANPLDRNSNRPALPC 200

Query: 189 TPSNIPR-----------FFDYPFQAIDPMF--------------------PIGEQNALH 217
                                +P   ++ +                     P G   A  
Sbjct: 201 PDGESMAERRKKLLPSKILSKWPAADLEKLLGQDGLSEIPIDHSVRPSQATPGGTVEATR 260

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE---FVDLLIKP 274
             ++F  +K+  Y + R+ P    T+ LSP+L  G +S  +  + + E      D   KP
Sbjct: 261 RWQEFLNKKLSRYNDDRNHPDEHATTGLSPHLHFGHISAHEMVSSILEHEGWSADQTSKP 320

Query: 275 KSGAFSWLNE-----------LIWREFYRHLMAFYPSVCMGKPFIPWTEK---IEWNKDS 320
                S+ N            L WRE   +     P        +P   +    E   D 
Sbjct: 321 NGKNHSFWNVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETRDDE 380

Query: 321 ----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
               + L  ++   T   I +AA R+L   G MHN +RM+    ++             F
Sbjct: 381 RPHLYTLAEFENAETHDEIWNAAQRELVETGEMHNYMRMLWGKKILHWTQTPEE--ALEF 438

Query: 377 MSQLL-----DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           M  L      DG   ++  G  W     + +    R   P     R+
Sbjct: 439 MIHLNNKYGLDGRDPNSYCGILWVLGRTDRAWGPKR---PVFGSVRY 482


>gi|221057079|ref|XP_002259677.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase) [Plasmodium knowlesi strain H]
 gi|193809749|emb|CAQ40451.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase), putative [Plasmodium knowlesi strain H]
          Length = 923

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 147/425 (34%), Gaps = 26/425 (6%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
            D R+ DN AL  A   +  K + + IA     R+  ++ R  H     L  ++ SL + 
Sbjct: 449 RDFRVNDNWALIYAYEMAKKKGLTL-IACTCLNRKEKVTNRFIHTKLKILKNLEYSLKKI 507

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR-VICK 134
            I F           I+    +    +V  +  +     +E    K L      R V   
Sbjct: 508 NIPFYMLPL----YMIDEFGEFMKTHQVKIITCDLHVLNDEKAFIKSLSHLCNKRKVKMF 563

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIRLTGPVTPSNI 193
             D   ++P            +   P  +AL+   L++       V  ++   P     +
Sbjct: 564 QVDSHNIVPMWVTSKMEECSVRTIKPKIQALLPTFLIEYMSIEPFVQNLKFPEPFDIDEV 623

Query: 194 PRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG 252
                     A+ P F + E+ A  +L+ FC + +  Y  +R+ P     S L PY+++G
Sbjct: 624 LNKLSVSNTCAVVPNFVLTEKKAEELLKDFCSKVLDKYNVKRNDPNSDAGSVLLPYVNLG 683

Query: 253 VLSPRQCWNRLKEE-FVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPW 310
           ++S ++C   + +  + +  I   SG  S+ ++ I  +E   +   +  +    +    W
Sbjct: 684 IISSQRCVLEVHKHAYNNPSINAVSGKESFSDDFIMRKELADNYCYYNKNYDNFEGGRDW 743

Query: 311 TEKIEWNKDSH------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            ++     D+         + ++   T   + +    QL   G MH  L++  A  ++  
Sbjct: 744 AKESLKKHDADKREYLYDYEDFRSAKTHNDMWNCCQLQLINEGIMHEFLKVYWAKKILNW 803

Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV-------PYFRIFNPTIQ 414
                   +          +DG   +      W+    +D            R  N    
Sbjct: 804 SGNSQTALKYALQLNNELSIDGKTPNGYVSIMWSIMGVHDQSWNEKNIFGKIRFINSNGC 863

Query: 415 GKRFD 419
            + FD
Sbjct: 864 KRNFD 868


>gi|294339500|emb|CAZ87859.1| putative Deoxyribodipyrimidine photo-lyase [Thiomonas sp. 3As]
          Length = 396

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 82/191 (42%), Gaps = 11/191 (5%)

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           +   Y   R+       ++LSPYL+ G L  R     L                  L EL
Sbjct: 26  RPADYARSRNHL-QGHVTRLSPYLTHGFLGLRDVVQHLSMRH------GLGLQDKLLQEL 78

Query: 286 IWREFYRHLMAFYPS-VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
            WR F++ +     S +   +   P  ++        L     +G TG P+ID A+R L 
Sbjct: 79  GWRAFFQQVWRHEGSGILQSQHLGPLPDR---AYAPALPADLCEGRTGVPVIDQAVRTLY 135

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             G++HN  RM  AS+ V    V WR G ++ ++ LLDGDLASN+  WQW A TG+    
Sbjct: 136 ATGYLHNHARMWLASYTVHLRKVHWRAGADWMVAHLLDGDLASNHLSWQWVAGTGSSKPY 195

Query: 405 YFRIFNPTIQG 415
            F   N     
Sbjct: 196 LFNADNVAKYA 206


>gi|320169667|gb|EFW46566.1| deoxyribodipyrimidine photo-lyase [Capsaspora owczarzaki ATCC
           30864]
          Length = 634

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 73/467 (15%), Positives = 137/467 (29%), Gaps = 48/467 (10%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M   +     L W+  D R+ DN AL  A   +    + +F+           + RQ  F
Sbjct: 121 MPIPSGHDGVLYWMSRDQRVQDNWALIYAQQLAIQHRVPLFVGFCLVPHFLDATIRQYDF 180

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L +V+ +L    I F     +  +    +++S  L   VT     R  +       
Sbjct: 181 MMEGLREVETALRGLNISFHLFTGTAAEHLPGFVESKRLGAVVTDFSPVRVIQRWTTELA 240

Query: 121 KLLEKRL---------QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLV 170
             L +              +     D   ++P            +   P    L+ + L 
Sbjct: 241 NSLAQTTIATTGATQSHTGIPLIQLDAHNVVPCWHASPKLEYAARTIRPKLHKLLSEFLT 300

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFF---------------DYPFQAID---------- 205
           +    +    + R +     S                     D+                
Sbjct: 301 EFPEVAAHPCSARQSPSSPQSARASSAASSNAHFQSGLSAPVDWDAARASLQVNRTITAV 360

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           P    G +  +  LR F ++++ Y+   R+ P  +  S LSPY   G ++P++       
Sbjct: 361 PDIVPGTRAGMTTLRTFVEQRMRYFGAVRNDPNERVLSNLSPYFHFGQIAPQRAILVAYA 420

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
                           L      + +      Y S+     +   T +         +  
Sbjct: 421 AHARCRESVDVFVEEALVRRELSDNFCFYNPNYDSIAGASAWAQETLQAHAGDAREFVYT 480

Query: 326 WKQ---GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW---RIGEEYFMSQ 379
            ++     T   + +AA  ++   G MH  +RM  A  +++         RI        
Sbjct: 481 EEELESATTHDLLWNAAQLEMVREGKMHGFMRMYWAKKILEWTASPSEALRIAIHLNDKY 540

Query: 380 LLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQGKRFD 419
            LDG   +   G  W+    +D            R  N     ++FD
Sbjct: 541 NLDGRDPNGYVGCMWSICGIHDQGWGERPIFGKIRFMNLKGCQRKFD 587


>gi|213647828|ref|ZP_03377881.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
          Length = 92

 Score =  113 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 65/92 (70%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67 QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98
           +Q +L++KGI   +H+ ++F+ SIE + + C
Sbjct: 61 ALQTALAEKGIPLLFHEVADFNASIETVKNVC 92


>gi|315425180|dbj|BAJ46850.1| deoxyribodipyrimidine photo-lyase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 360

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 123/354 (34%), Gaps = 30/354 (8%)

Query: 97  YCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK 156
             L      +  +  Y  ++    K L K        K  +  V++P  +    A    +
Sbjct: 9   LKLVNEAVSVVVDAGYTGHQQTFRKTLAKYCDS---VKMVEGDVVVPVKTASTRAEPYAR 65

Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY--PFQAIDPMFP----- 209
              P     + N ++     +PV        +       F      F +I+ + P     
Sbjct: 66  TIRPKLLNKLDNFLETVPE-IPVKQSSTDLDIEGLRYETFEHLLKDFGSIEFVEPVKDVV 124

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            GE  A   L  F  E++  Y  +R  P  +  S+LSPYL  G++SP Q   R+ E    
Sbjct: 125 GGEDEAHKRLETFVGERLDRYAAERSDPGSEACSELSPYLRYGMISPVQVLKRVFEYRR- 183

Query: 270 LLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHL 322
              +      S +NEL +WRE  R+   + P     +    W  +       +  +  + 
Sbjct: 184 ---RGDVNVESLINELVVWRELARNGEVYNPFFEKYEGLPEWARETLSIHAGDRREQVYS 240

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD---WRIGEEYFMSQ 379
           +   ++  T     +AA ++L   G +HN +RM     L++        +R         
Sbjct: 241 MSELERADTHDVYWNAAQQELLATGKIHNYMRMYWCKKLLEWTDSPETAYRYAVYLNNKY 300

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG-----KRFDPQGTFIRHW 428
            LD +  ++  G  W     +      +I+    +      KR      +I+ W
Sbjct: 301 GLDAEDPNSYLGISWCFGAYDRPFTESKIYGKVRRMTDQSLKRKKQINNYIQRW 354


>gi|162448261|ref|YP_001621393.1| deoxyribodipyrimidine photolyase [Acholeplasma laidlawii PG-8A]
 gi|161986368|gb|ABX82017.1| deoxyribodipyrimidine photolyase [Acholeplasma laidlawii PG-8A]
          Length = 458

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 165/438 (37%), Gaps = 42/438 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++  +RI  N AL  A   ++ K + + +           + R   F+   L ++Q+
Sbjct: 23  LYWMQQSMRIQYNHALNYAIELANKKKLPLIVWFNILPNYPEANLRHYTFMLEGLKELQQ 82

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-- 128
              ++ I F+       ++   +LD       V  +  +R Y   + +    + K ++  
Sbjct: 83  DFVKENIHFELSIGKLTENIKPYLD------DVDTIIMDRGYLKPQRQMRNEVYKIVKDT 136

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-RKALIQNLVQADLRSLP-VPAIRLTG 186
           H +     +  +++P   +   A     V  P   + L Q +   +L  L  +   ++  
Sbjct: 137 HAIDIIQVETDLIIPVEVLYPKAAYGAYVIRPKVMEKLPQYMDYRELSRLDNIEKTKVYE 196

Query: 187 PVTPSNIPR-FFDYPFQ-AIDP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           P+  SNI     + P   ++ P   F  G + A   L  F  + +  Y + R  PA+   
Sbjct: 197 PLDLSNIDEVVKNLPIDMSVKPYHKFKGGRKEAYKHLEYFFNQLLKDYDK-RSDPALHIQ 255

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEE------------FVDLLIKPKSGAFSWLNELIWREF 290
           S +S YL  G +S ++    L +             F++ L+  +S A++++  +   + 
Sbjct: 256 SYMSMYLQFGQVSDQEILRMLYDHPFYKIYPEMSEGFIEQLVVRRSLAYNFVTYIKDYDV 315

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  +   +    M +        I      + L+  +   T     +AAM++    G+M 
Sbjct: 316 FEFMTESWAYETMYEHERDLRTHI------YSLEDIEFSKTHDIHFNAAMKEARITGFMA 369

Query: 351 NRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP--- 404
           N LRM  A  +++    +   ++I         +DG   ++ G   W     + +     
Sbjct: 370 NYLRMYWAKKIMEWSGSMKDAYQIIVYLNNKYFIDGRNPNSYGNIAWNFGKHDRAWQERA 429

Query: 405 ---YFRIFNPTIQGKRFD 419
                R  N     ++FD
Sbjct: 430 IFGKLRYMNEQGLIRKFD 447


>gi|254437730|ref|ZP_05051224.1| hypothetical protein OA307_2600 [Octadecabacter antarcticus 307]
 gi|198253176|gb|EDY77490.1| hypothetical protein OA307_2600 [Octadecabacter antarcticus 307]
          Length = 408

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 77/206 (37%), Gaps = 13/206 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRL 263
           +         IL+ F       Y   R+        +  S LSPY+       R+     
Sbjct: 7   WTPNRAAGDAILKAFIPRMGRRYANGRNTDHGAGGHKAVSVLSPYIR------RRLVLEQ 60

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE---KIEWNKDS 320
                 L       A  ++ E+IWR +++  +   P V          +        +  
Sbjct: 61  DAVAAALAAHGPVDAEKFVQEVIWRGYFKGWLERRPQVWASYVTELEADLSALDRDRRLR 120

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
             +     G TG    DA   +L   G++HN  RM  AS  +  L + WR+G ++F   L
Sbjct: 121 RDVDRAMNGQTGIECFDARAMELVDTGYLHNHARMWFASIWIFTLGLPWRLGADFFYRHL 180

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYF 406
           LDGD ASN  GW+WAA       PY 
Sbjct: 181 LDGDAASNTLGWRWAAGLHTRGKPYP 206


>gi|283851297|ref|ZP_06368579.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B]
 gi|283573247|gb|EFC21225.1| DNA photolyase FAD-binding [Desulfovibrio sp. FW1012B]
          Length = 462

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 135/441 (30%), Gaps = 30/441 (6%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
              ++W+  D R  DN AL  A   + A    +F            +AR + F+   L  
Sbjct: 19  GPVVLWMGRDQRADDNWALLHAAALAKAAGAPLFALFALPPDFPPATARHADFLLRGLAA 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V+ +L   GI           D    + ++  + R      +           + +    
Sbjct: 79  VETALRDHGIPLALVPG----DPAVAVPAFLRRVRAGVCVTDFDPLRPGRAAREAVATAP 134

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                    D   ++P              + P    L+   ++     LP  A      
Sbjct: 135 VWDGALLEVDAHNVVPAFVASAKREYAAATFRPKILKLLPEFLE-PFPDLPAFAAGNLAG 193

Query: 188 VTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             P +           P  A       G + A   L  F  +++  Y ++R+ P    TS
Sbjct: 194 FAPVDWEAARAGLVLDPSVAPVAGITPGPEAAREALAAFLADRLPAYADRRNDPNAGATS 253

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPSVC 302
            LSP+   G L+P++      E       +  +GA ++L EL + RE   +     P+  
Sbjct: 254 TLSPWFHHGHLAPQRAALDALE----AKKRAPAGAEAFLEELVVRRELADNYCLHEPAYD 309

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGY------TGFPIIDAAMRQLNTIGWMHNRLRMI 356
                  W +K      +                T   + +AA RQL   G +H  +RM 
Sbjct: 310 TLAALPAWAQKTLGAHAADPRPYRYTAREFETAATHSALWNAAERQLVRQGRLHGYMRMY 369

Query: 357 TASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDSV-------PYF 406
            A  +++                    LDG   S   G  W+    +D            
Sbjct: 370 WAKKILEWSATPEAALATALSLNDRYALDGSDPSGVAGVLWSVGGLHDRPWASRPVFGQI 429

Query: 407 RIFNPTIQGKRFDPQGTFIRH 427
           R  N     ++FD      RH
Sbjct: 430 RYMNARGCRRKFDVDAYIARH 450


>gi|332295845|ref|YP_004437768.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM
           14796]
 gi|332178948|gb|AEE14637.1| DNA photolyase FAD-binding protein [Thermodesulfobium narugense DSM
           14796]
          Length = 443

 Score =  113 bits (282), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 148/438 (33%), Gaps = 43/438 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W++   R+  N +   A + S+   I + +     +     + R   F    L  V +
Sbjct: 21  LYWMQGAFRVKYNHSFEYAKYLSNKHNIPLLVLIIVDFSYPEGNFRSFKFFLEGLKDVFE 80

Query: 71  SL--SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
                Q GI              + L SY    ++  +  ++ Y  N +     +    +
Sbjct: 81  ETISQQIGINIVV------GSFQDVLKSYIDNAKI--MITDKSYLPNLINIKNTIYS--E 130

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
           +++     D ++++P   +            P    L+    + D   +      L    
Sbjct: 131 NKITIYQVDTNLVIPVNIVSQKKEYAAYTIRPKILKLLYEY-RNDFEEIKYNGSFLKPKT 189

Query: 189 TPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
                    +   Q +  + P     G + A  IL  F  +K  YY + R+ P  +  S 
Sbjct: 190 EVDLNNIENELRKQNLVNVLPAPYIGGYKEAKKILDYFVSKKFKYYKDNRNNPEKESESN 249

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY------ 298
           +SPYL  G +SP +  + L     ++  K     +S+  E++ R    H   +Y      
Sbjct: 250 ISPYLHFGNISPLEILDTL-----EIFDKSSENYYSFFEEMVIRRELAHNFTYYSNDLNN 304

Query: 299 -----PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P+      +    +K E+       +  K   T   I +A+ R+L   G +HN +
Sbjct: 305 LENLLPAWAFKTFYEHKDDKREYVYSLEEFENSK---THDEIWNASQRELKKRGKIHNYM 361

Query: 354 RMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           RM          K++   +           LDG   ++  G  W     + +    +IF 
Sbjct: 362 RMYWGKKIIEWSKNIEDAYDAMIYLNNKYALDGRDPNSYVGILWCFGLHDRAFKERKIFG 421

Query: 411 PTIQGKRFDPQGTFIRHW 428
                     QG+ IR +
Sbjct: 422 KVRWMS----QGSLIRKF 435


>gi|325285641|ref|YP_004261431.1| DNA photolyase FAD-binding protein [Cellulophaga lytica DSM 7489]
 gi|324321095|gb|ADY28560.1| DNA photolyase FAD-binding protein [Cellulophaga lytica DSM 7489]
          Length = 372

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 15/216 (6%)

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW 260
           F+     FP         + +        Y   R+       + LSPY+S GV+S +   
Sbjct: 4   FEDESAFFPTTIDEIYKRVNQI---NPIEYASTRNYING-AVTHLSPYISRGVISTKYIL 59

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-KD 319
             +  +    L         ++ EL WR++++ +      +  G       +  +    +
Sbjct: 60  KEVLSQGHKPLE-----IEKFIQELAWRDYWQQVW-----IAKGDEINTDLKHTQTPVSN 109

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
             + ++  +  TG   +D A+R+L   G+MHN LRM  AS         W +  ++    
Sbjct: 110 IQIPKSIVEANTGIIAVDNAIRKLEQTGYMHNHLRMYAASLACNIGQSHWLLPAKWMYYY 169

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           LLD D ASN   WQW A + ++   Y    N     
Sbjct: 170 LLDADWASNALSWQWVAGSNSNKKYYANQENINKYC 205


>gi|254440134|ref|ZP_05053628.1| hypothetical protein OA307_5004 [Octadecabacter antarcticus 307]
 gi|198255580|gb|EDY79894.1| hypothetical protein OA307_5004 [Octadecabacter antarcticus 307]
          Length = 384

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 15/202 (7%)

Query: 228 YYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLN 283
             Y   R+     G     S LSPY+   +L+  +           L       A  ++ 
Sbjct: 3   KRYEIGRNYDHGPGQHSAVSVLSPYIRRRLLTEAEVVAAA------LTTHGPDDARVFIE 56

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA---WKQGYTGFPIIDAAM 340
           E+IWR +++  +   P V          + +  N+D  L +     + G TG    D   
Sbjct: 57  EVIWRGYFKGWLERRPQVWDSYALGLNADLVSLNRDRRLRRDLELAETGQTGMDYFDTWA 116

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGN 400
           ++L   G++HN  RM  AS  +  L + WR+G ++F   LLDGD A+N   W+WAA    
Sbjct: 117 QELVDTGYLHNHARMWFASIWIFTLGLPWRLGADFFYRHLLDGDAAANTLNWRWAAGLHT 176

Query: 401 DSVPYF-RIFNP-TIQGKRFDP 420
              PY  R  N  T  G RF+P
Sbjct: 177 RGKPYPARAKNIATFTGGRFNP 198


>gi|309389065|gb|ADO76945.1| DNA photolyase FAD-binding protein [Halanaerobium praevalens DSM
           2228]
          Length = 454

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 140/415 (33%), Gaps = 30/415 (7%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
            W++   R+  N+AL  A   ++     + I      +          F+   L +++  
Sbjct: 24  YWMQASPRLEYNQALGYAIEKANELNQPLLIFFLIDAKFPEAKTAHFKFMLQGLKELKTK 83

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L  +   F     +  +D  +        ++ + L   + Y  +  +    +  +++  +
Sbjct: 84  LKNEDFNFYLIDYNKLEDIKQI------TKKASLLISEKAYLKHLRKWKNQVAAKVK--I 135

Query: 132 ICKSFDDSVLLPPGSILNH--------ALQMYKVYTPF-RKALIQNLVQADLRSLPVPAI 182
                + +++ P   + +           ++ K+   + ++  +Q L   +        +
Sbjct: 136 PFYLVESNLICPIEEVSDKEEYAAYTIRKKINKIKNEYLKEYQLQRLKNKNKIEFENKNL 195

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT 242
           +    +      + F+   Q +   F  G + A   L  F K K+  Y E+R+IP +   
Sbjct: 196 KFVKNLNQYLENKNFEL-QQDLSDHFRGGYKAAKLKLNDFLKNKLKDYEEKRNIPHLNFQ 254

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSPYL  G ++ ++          D     KS     +        + +    Y    
Sbjct: 255 SDLSPYLHFGQIAAQEIALAALNSEYD----EKSFLEELIVRRELAFNFVYYNQNYDGSL 310

Query: 303 MGKPF-IPWTEKIEWNKDSHLLQAW----KQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
               +   +   +E   D           +   T     +AA +++   G MHN +RM  
Sbjct: 311 KDILYDWAYQSLMEHQADEREYLYTYQELENAKTHDKYWNAAQKEMLLTGKMHNYMRMYW 370

Query: 358 ASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
                    D    ++   +      LDG  A++  G  W  S  + +    +IF
Sbjct: 371 GKKILEWNSDPEEAYQWALKLNNKYSLDGRDANSYAGVAWIFSKHDRAWKERKIF 425


>gi|327538009|gb|EGF24703.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
          Length = 479

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/459 (16%), Positives = 137/459 (29%), Gaps = 69/459 (15%)

Query: 19  RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
           R+  N AL  A   +      + I  P + R    S R   FI   +     +   + + 
Sbjct: 6   RLNWNFALQHAIDRALEFEKPLLIFEPLRVRYQWASDRIHRFIIEGMRD--NAAEAESLP 63

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
             Y+        +     + L +    +  +             ++ +L  R+      D
Sbjct: 64  VVYYPYVEPKPGVGSPLLHRLAKHACTVVTDEYPCFFLPHMIDAVKDKLPARLELI---D 120

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSNIPR- 195
           S  + P         +   Y  F +  I   ++    + P+   + R   P         
Sbjct: 121 SNGILPLRAAEKTYTVAHSYRRFMQKNILPALEQLPLANPLDRNSNRPALPCPDGESMAE 180

Query: 196 ----------FFDYPFQAIDPMF--------------------PIGEQNALHILRKFCKE 225
                        +P   ++ +                     P G   A    ++F  +
Sbjct: 181 RRKKLLPSKILSKWPVAELEKLLGQDGLSEIPIDHSVRPSQATPGGTAEASRRWQEFLNK 240

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE---FVDLLIKPKSGAFSWL 282
           K+  Y + R+ P    T+ LSP+L  G +S  +  + L +      D   KP      + 
Sbjct: 241 KLSRYNDDRNHPDEHATTGLSPHLHFGHISAHEMVSSLLDHEGWSADQTSKPNGKNHGFW 300

Query: 283 NE-----------LIWREFYRHLMAFYPSVCMGKPFIPWTEK---IEWNKDS----HLLQ 324
           N            L WRE   +     P        +P   +    E   D     + L 
Sbjct: 301 NVGENAEALLDQLLTWREIGFNWSFQNPDTYDSLESLPDWAQKTLNETRDDERPHLYTLA 360

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL--- 381
            ++   T   I +AA R+L   G MHN +RM+    ++             FM  L    
Sbjct: 361 EFENAETHDEIWNAAQRELVETGEMHNYMRMLWGKKILHWTQTPEE--ALEFMIHLNNKY 418

Query: 382 --DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
             DG   ++  G  W     + +    R   P     R+
Sbjct: 419 GLDGRDPNSYCGILWVLGRTDRAWGPKR---PVFGSVRY 454


>gi|124026272|ref|YP_001015388.1| DNA photolyase-like protein [Prochlorococcus marinus str. NATL1A]
 gi|123961340|gb|ABM76123.1| DNA photolyase-like protein [Prochlorococcus marinus str. NATL1A]
          Length = 371

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 18/197 (9%)

Query: 213 QNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
             A  +L  F    +  Y + R+           SQ+S Y S  +L          E  +
Sbjct: 5   DEANDLLDNFIFNHLNSYHQLRNYDYGIEDRTNVSQISKYTSHRIL---------YEFDI 55

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
              +K       + +E++WR +++  +  Y S+               + +S+L+ +   
Sbjct: 56  IEKLKKYDKKQKYTDEILWRIYWKGYLENYKSIWFEYINFKEN-----SNNSYLISSAIN 110

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG    D  + +L    ++HN  RM  AS  +  L + W++G   FM  LLDGD ASN
Sbjct: 111 GKTGIDCFDTWIEELRENNYLHNHARMWFASIWIFTLGLPWQLGARLFMKHLLDGDAASN 170

Query: 389 NGGWQWAASTGNDSVPY 405
              W+W A    +  PY
Sbjct: 171 TLSWRWVAGMHTNKKPY 187


>gi|146337586|ref|YP_001202634.1| putative deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp.
           ORS278]
 gi|146190392|emb|CAL74388.1| putative Deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp.
           ORS278]
          Length = 406

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 24/240 (10%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEF 267
               L  L+         Y   R+     G     S LSP++   +++  +         
Sbjct: 10  RAAGLARLQTVLPRLGRAYAAGRNHDHGPGRPQAVSGLSPWIRRRLVTEEEVVRAAVAAH 69

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD---SHLLQ 324
                K       ++ E+IWR +++  +   P V          +    + D      + 
Sbjct: 70  GGAADK-------FVEEVIWRGYFKGWLERRPQVWTSYLRGRDADLERLDSDGALQARVA 122

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           A + G TG    DA  ++L   G +HN  RM  AS  +  L + WR+G ++F+  LLDGD
Sbjct: 123 AAEAGRTGLACFDAFAQELVATGMLHNHARMWFASLWIFTLGLPWRLGADFFLRHLLDGD 182

Query: 385 LASNNGGWQWAASTGNDSVPYFRIFN--PTIQGKRFDPQGTFIRHWLPELNNVPTQYIHA 442
            ASN  GW+W A        Y    +        RF P+        PE   +P Q + A
Sbjct: 183 PASNTLGWRWVAGLHTRGKVYAATASNIAQYSAGRFAPR--------PEDIVIPAQGLEA 234


>gi|71386194|gb|AAZ31072.1| cryptochrome 2B apoprotein [Medicago sativa]
          Length = 154

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 6/115 (5%)

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
            VK LL+ W+ G +YF   LLD DL S+  GWQ+ + +  D     R+ +P IQG ++D 
Sbjct: 1   AVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPEIQGTKYDS 60

Query: 421 QGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKACHH 469
           +G ++R WLPEL  +PT++IH P +           +L  NYP PI+D   A   
Sbjct: 61  EGEYVRQWLPELARIPTEWIHHPWNAPPTVLRASGVELGQNYPKPIIDIDLAREQ 115


>gi|171057934|ref|YP_001790283.1| deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii
           SP-6]
 gi|170775379|gb|ACB33518.1| Deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii
           SP-6]
          Length = 420

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 13/222 (5%)

Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
            R  D P    D + P     AL  +    + +   Y   R+       + LSPYL+ G+
Sbjct: 7   HRLEDSPAPWADTL-PPTRSAALARI---ARVRPAAYARTRNHLDG-AVTGLSPYLTHGL 61

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           ++  +    + +       +        + EL WREF+RH         +    +    +
Sbjct: 62  ITLPEVLAGVLQR------ERLEVRHKLVFELGWREFFRHAWGHAGDAILQS--LHTGPR 113

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
            +      L    +Q  TG P+ID A+R L   G +HN  RM  AS++V    V WR G 
Sbjct: 114 PDETCAPVLPADIRQARTGVPVIDEAVRTLYATGTLHNHARMWLASYVVHLRHVHWRAGA 173

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           ++ ++ LLDGDLASN+  WQW A TG+     F   N     
Sbjct: 174 DWLVAHLLDGDLASNHLSWQWVAGTGSHKPYLFNADNVACYA 215


>gi|300309758|ref|YP_003773850.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1]
 gi|300072543|gb|ADJ61942.1| deoxyribodipyrimidine photolyase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 439

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 85/196 (43%), Gaps = 9/196 (4%)

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
            +    +   Y   R+       + LSPYL+ G++S R     + + +      P     
Sbjct: 51  ERIAAVRPGAYARTRNSLDG-AVTGLSPYLTHGMVSLRDVLAGVCQRY------PLEVQH 103

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
            ++ EL WR FYR++ +   +              E      L    + G TG P+ID A
Sbjct: 104 KFVYELGWRAFYRYVWSRRGARIFDSLHAGPL--PEAAYARELPDDIRAGATGVPVIDQA 161

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           +R L   G +HN  RM  AS++V    V WR G ++ +  LLDGDLASN+  WQW A TG
Sbjct: 162 VRTLYATGNLHNHARMWLASYVVHLRKVHWRAGADWMVGHLLDGDLASNHLSWQWVAGTG 221

Query: 400 NDSVPYFRIFNPTIQG 415
           +     F   N     
Sbjct: 222 SHKPYLFNAENVAKYA 237


>gi|219118604|ref|XP_002180071.1| class II CPD photolyase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408328|gb|EEC48262.1| class II CPD photolyase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 511

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 159/459 (34%), Gaps = 48/459 (10%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQ--------------WRQHGI 53
           + W++ D+R  DN AL  A       D  +  V+   P                  Q  +
Sbjct: 23  VYWMQRDVRSVDNWALLWARDLAMQHDVPLHVVYALPPPASSDGSDNDRDLPPALIQLPM 82

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           + R   F+   L  V K L +  I        + +   E +    L +   K+  +    
Sbjct: 83  TKRHGAFLLGGLECVYKELKEMKIPLYVCLPDSHEKVGETVCEAILHKYKAKIVVSDFSP 142

Query: 114 INEVRRD---KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
           I E R+    + +    + +V     D   ++P  +  +      +   P    +  + +
Sbjct: 143 IREYRQWMELQAVPILEEAKVPFYQVDAHNIVPVWTATDKRQVGARTLRPRIHKVYNDYL 202

Query: 171 Q--ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
           Q   DL+       +              D   +++D   P  E   +     F K  + 
Sbjct: 203 QDYPDLKGNSHSVDQPKFDRVEYESFLQMDESVESVDWAQPGTE-AGMKQFEFFSKNGLK 261

Query: 229 YYVEQRDIPAIQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LI 286
            + EQR+ P  +   S +SP+++ G +S      +     V  L K  +GA +++ E +I
Sbjct: 262 IFHEQRNDPVQKHVCSDMSPWINHGHIS-----FQRLALNVKALNKHANGAAAFIEEGVI 316

Query: 287 WREFYRHLMAFYPS----VCMGKPFIPWTEKIEWNKDSHL---LQAWKQGYTGFPIIDAA 339
            RE   +++ + P+    +     +   + ++  + +      L   ++G T   + +AA
Sbjct: 317 RRELSDNMLYYSPNDYDSLETAAGWARESLQLHASDEREFVYSLSELEEGRTHDDLWNAA 376

Query: 340 MRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
             Q+   G MH  +RM  A       +  +   R  +       LDG   +   G  W+ 
Sbjct: 377 QLQMVRDGKMHGFMRMYWAKKILEWSESPVGALRTAQYLNDKYELDGRDPNGFVGVGWSI 436

Query: 397 STGNDS-------VPYFRIFNPTIQGKRFDPQGTFIRHW 428
              +D            R  N     ++F  +  ++  +
Sbjct: 437 MGIHDQGWKEREVFGKIRYMNYNGCKRKFKVE-EYVAQY 474


>gi|72382567|ref|YP_291922.1| putative DNA photolyase [Prochlorococcus marinus str. NATL2A]
 gi|72002417|gb|AAZ58219.1| putative DNA photolyase [Prochlorococcus marinus str. NATL2A]
          Length = 371

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 18/197 (9%)

Query: 213 QNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
             A  +L  F  + +  Y + R+           SQ+S Y S  +L          E  +
Sbjct: 5   DEANDLLDNFIFDHLNSYHQLRNYDYGIENRTNVSQISKYTSHRIL---------YEFDI 55

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
              +K       + +E++WR +++  +  Y S+               + +S+L+ +   
Sbjct: 56  IEKLKKYDKKQKYTDEILWRIYWKGYLENYKSIWFEYINFKEN-----SNNSYLISSAMN 110

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G TG    D  + +L    ++HN  RM  AS  +  L + W++G   FM  LLDGD ASN
Sbjct: 111 GKTGIDCFDTWIEELKENNYLHNHARMWFASIWIFTLGLPWQLGARLFMKHLLDGDAASN 170

Query: 389 NGGWQWAASTGNDSVPY 405
              W+W A    +  PY
Sbjct: 171 TLSWRWVAGMHTNKKPY 187


>gi|326507630|dbj|BAK03208.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 507

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 75/460 (16%), Positives = 140/460 (30%), Gaps = 44/460 (9%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH-- 59
            A       + W+  D R+ DN AL  A   + A    + +A     +   +SAR+    
Sbjct: 33  PAGAKPGPVVYWMLRDQRLADNWALLHAASLAAASAAPLAVAFSLFPKPFLLSARRRQLG 92

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F+   L ++    + + I F        +     + +   +   + L     +      R
Sbjct: 93  FLLRGLRRLAADAATRRIPFFLLTGGPTE-----IPALVRRLGASALVA--DFSPLRPVR 145

Query: 120 DK--LLEKRL---QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
           +    +   L      V     D   ++P  +         K +      ++   +    
Sbjct: 146 EALDAVVGTLGRDAASVAVHQVDAHNVVPVWAASGKLEYSAKTFRSKMNKVLDEYLVEFP 205

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID----PMFPIGEQNALHIL----RKFCKEK 226
               V       P              QA D         GE  A+  L      F  ++
Sbjct: 206 ELAQVVPWDREQPKDIDWDMLIDTVCSQAEDVPEIDWCEPGEAAAMEALLGTKDGFLTKR 265

Query: 227 VYYYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           +  Y   R+ P      S LSPYL  G +S ++C    K+      + PKS        +
Sbjct: 266 IKSYDSDRNYPTKPTALSGLSPYLHFGHISAQRCALEAKKR---RHLSPKSVDAFLEELI 322

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAA 339
           I RE   +   + P          W  K   +  +   +        +   T  P+ +A+
Sbjct: 323 IRRELADNFCYYQPHYDSVAGAWEWARKTLKDHAADKREHIYTREQLENAKTADPLWNAS 382

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAA 396
             ++   G MH  +RM  A  +++          I         +DG   +   G  W+ 
Sbjct: 383 QLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSIAIYLNDKYHIDGRDPNGYVGCMWSI 442

Query: 397 STGNDS-------VPYFRIFNPTIQGKRFDPQG--TFIRH 427
              +D            R  N     ++ D     ++++ 
Sbjct: 443 CGLHDQGWKERPVFGKIRYMNYAGCKRKLDVDAYISYVKR 482


>gi|218506724|ref|ZP_03504602.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli Brasil 5]
          Length = 191

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
           R+   +  R +  LEK     +  KSF   +L  P  ++  +   Y+VYTPF +AL  ++
Sbjct: 15  RRASPSTPRIEHELEK---QAIEVKSFGGQLLHEPSRLMTGSGTPYRVYTPFWRALESSI 71

Query: 170 VQADL--RSLPVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKE 225
            +  L   S    A +L G     +       P  A +   ++  GE+ A   LR F ++
Sbjct: 72  EREPLDIPSKLQLASKLPGSENLESWKLLSTQPDWASNFADLWTPGEEGAQEKLRTFIED 131

Query: 226 KVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           ++  Y E RD PA   TS LSP+L++G +SP + W+  +     +   P +    +  E+
Sbjct: 132 RLDGYKENRDYPAKPATSMLSPHLALGEISPARIWDATRGLSKHV---PAADIVHFRKEI 188

Query: 286 IWR 288
            WR
Sbjct: 189 AWR 191


>gi|33861916|ref|NP_893477.1| DNA photolyase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33640284|emb|CAE19819.1| similar to DNA photolyase [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 379

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/229 (23%), Positives = 89/229 (38%), Gaps = 18/229 (7%)

Query: 215 ALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           A      F + K+  Y + R            S+LSPY     +S R        E V  
Sbjct: 7   AQEKWDDFLENKITNYEKLRSFDYGPTNKSSVSKLSPY-----ISHRVLLEYELLEEVKK 61

Query: 271 LIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
             + +     ++ E+ WR +++  M   P V        +  +  +  D    +    G 
Sbjct: 62  KYRSQK-INKFVEEIYWRIYWQGWMENRPKVW-----CNFISENNYEYDIETYEKAINGN 115

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
           +     ++ + +L T  ++HN  RM  AS  + +L + W++G  +F   L DGD ASN  
Sbjct: 116 SELGFFNSWVNELKTYNYLHNHTRMWFASTWIFNLGLPWQLGASFFFKHLYDGDAASNLL 175

Query: 391 GWQWAASTGNDSVPY-FRIFNPTIQG-KRFDPQGTFIRH-WLPELNNVP 436
            W+W A        Y F   N       RF+ +    R  +L E N +P
Sbjct: 176 SWRWVAGLQTKGKQYRFSSANLRKFSNNRFNVEKISNRQIFLEEKNQIP 224


>gi|332093769|gb|EGI98823.1| deoxyribodipyrimidine photo-lyase domain protein [Shigella boydii
           5216-82]
          Length = 78

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 50/73 (68%)

Query: 407 RIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKA 466
           RIFNP  QG++FD +G FIR WLPEL +VP + +H P  W  K  + L+YP PIV+HK+A
Sbjct: 4   RIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQPIVEHKEA 63

Query: 467 CHHTLNQYYAAKK 479
              TL  Y AA+K
Sbjct: 64  RVQTLAAYEAARK 76


>gi|293605132|ref|ZP_06687523.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
 gi|292816456|gb|EFF75546.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
          Length = 115

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 2/115 (1%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+WLR DLR+ DN AL AA  N    V A+F+A P+QWRQHG +  +  F   +L ++ 
Sbjct: 3   TLLWLRTDLRMHDNPALAAARENG--TVTALFLAAPDQWRQHGDAPAKVDFWLRNLHELS 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           + L ++GI  +    +++  + E + ++C    +T++  N ++ INE RRD  + 
Sbjct: 61  RDLGERGIPLKLLTVADWSKAPEAIAAFCQAHAITQVHANTEWAINERRRDAAVA 115


>gi|312899443|ref|ZP_07758773.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0470]
 gi|311293313|gb|EFQ71869.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0470]
          Length = 220

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 11/221 (4%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4   VMWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           + + Q     + H      + ++       +      +++N        +RD+   +  +
Sbjct: 61  ERIDQ-----EAHLQIMVGEPLDLFSRLKRKLPDWQAIYFNEDTCGFGAKRDQQAMRFFE 115

Query: 129 HRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              I   SF D+ L     I  +    Y+V+TP+     +   +  +          +  
Sbjct: 116 ENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYNKWKEAPKETPIPVSYTAEKIFSAC 175

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
           + P     + +   +     + +GE+ A   L  F      
Sbjct: 176 LFPEEEAAYGEQIARIPLTHYSVGEKTARRCLNTFIDMICQ 216


>gi|291334324|gb|ADD93984.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
           MedDCM-OCT-S09-C3]
          Length = 496

 Score =  110 bits (275), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 74/481 (15%), Positives = 143/481 (29%), Gaps = 66/481 (13%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +  + W+ +  R   N AL  A   ++   + + +           + R   F+   ++ 
Sbjct: 19  THVVYWMTSARRARWNHALDHAVELANEHHVPLIVVECLALGHRYANDRIHTFVLQGMMD 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             + L +   V               L     +     +  +           +  +K  
Sbjct: 79  -NRKLFEMSAVTYVPYVETKKFQAGGLLQSFAK-DAVAVVIDDYPTYMPRDVARRAKKLT 136

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL--T 185
           Q  V C    DS  + P      +      +  +    + N +     S P+  +     
Sbjct: 137 QCSVRCI---DSNGVVPLRAPERSFSTAHSFRRYIHQNVLNFIADPPLSHPLKELNDVPD 193

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQN----------------------------ALH 217
           G +         + P   ++ ++ + E +                            A  
Sbjct: 194 GSIIVKQCFEEVNIPLTPLEFIWRVSEASREGRDALQALDIDHDVPPVDSRRGGSVTART 253

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL-------------- 263
            L+KF ++++  Y   R+ P   G S LSP+L  G +S  +  N +              
Sbjct: 254 ELKKFIEQRLNTYHVDRNHPERHGGSGLSPWLHFGHISSFEIVNEVLTSQKWNPMLITPP 313

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI--EWNKDS 320
                        GA ++L+++I WRE        +P     +    W +K   E   D 
Sbjct: 314 HNGRRAGWWGLSEGAEAFLDQVITWRELGFVYCYEHPDHTSYQTLPEWAKKTLEEHATDE 373

Query: 321 ----HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGE 373
               +  +  +   T  P+ +AA  QL   G +HN LRM+          D         
Sbjct: 374 RPYVYTFEQLENAETHDPLWNAAQTQLRKEGIIHNYLRMLWGKKVLEWCPDPEKACEWLI 433

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSV------PYFRIFNPTIQGKRFDPQGTFIRH 427
           +      LDG   ++  G  W     +            R        ++F     +IR 
Sbjct: 434 QLNDRWALDGRDPNSYTGIFWIFGRFDRGWFERSVFGKIRYMTSASTQRKF-KTEDYIRK 492

Query: 428 W 428
           +
Sbjct: 493 Y 493


>gi|149175245|ref|ZP_01853867.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797]
 gi|148845854|gb|EDL60195.1| deoxyribodipyrimidine photolyase [Planctomyces maris DSM 8797]
          Length = 497

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 81/472 (17%), Positives = 150/472 (31%), Gaps = 57/472 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  + R   N +L  A   S      + +    +      S R   F+   ++  + 
Sbjct: 24  LYWMIANRRTRYNYSLQRAVELSKELNKPLLVFEALRCGYEWASDRLHRFVLQGMVDNRD 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           SL    + +  +           L +     +   +  +        +  K +  RL  R
Sbjct: 84  SLQDSPVGYYCYVEPKAGHGSGLLSAL--ATKACAVVTDDFPCFFIPQMLKSVAPRLSVR 141

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT----- 185
           +      DS  L P    +        +  F    + + +    +  P+  I L      
Sbjct: 142 LEAI---DSNGLLPLRAASQIYPTAYAFRRFLHKALPDHLDQTPKINPLSHIDLPEFSSL 198

Query: 186 ------------GPVTPSNIPRFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
                         +  +      D P   Q     F  G + A   L++F   +   Y 
Sbjct: 199 PAKILERWPMASDQLLQATPEVLADLPLDHQVGPADFDGGMKAASKTLKQFLNVRFERYA 258

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE----FVDLLIKPKSG---------- 277
           E+R++P  + TS LSPYL  G +S  + + R+ +        ++ +  +G          
Sbjct: 259 EERNLPEEEVTSGLSPYLHFGHISVHEVFKRVADREDWNAAKVIDQKATGKRAGWWQMSE 318

Query: 278 -AFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------LLQAWKQG 329
            A  +L+ELI WRE   ++          +    W         +        L+ ++Q 
Sbjct: 319 TAEGFLDELITWRELGYNMCWQRDDYDQYESLPDWARTTLEEHAADKRDPCYTLEEFEQA 378

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITAS---FLVKDLLVDWRIGEEYFMSQLLDGDLA 386
            T   + +AA  QL T G MHN +RM+         K       I         +DG   
Sbjct: 379 RTHDELWNAAQTQLVTEGRMHNYMRMLWGKKILHWSKSPQAALEIMMHLNNKYAVDGRNP 438

Query: 387 SNNGGWQWAASTGNDSVPY-------FRIFNPTIQGKRFDPQGTFIRHWLPE 431
           ++  G  W     + +           R        ++F   G ++  +  E
Sbjct: 439 NSYSGIFWCLGRYDRAWGPERPIFGKIRYMTCENTARKFSVDG-YLERFSKE 489


>gi|308810671|ref|XP_003082644.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
 gi|116061113|emb|CAL56501.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
          Length = 484

 Score =  110 bits (274), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 76/444 (17%), Positives = 151/444 (34%), Gaps = 42/444 (9%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFI---ATPEQWRQHGISARQSHFIYASLLQVQKSL 72
            D R + N AL  A   ++   + + +      +   +    AR++ F      ++ ++L
Sbjct: 42  RDARTSCNDALARATRMANGFGVPLVVAMHVGRDLSGRGIGGARRAVFGLEGRRELDEAL 101

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
             +G      + +  DD+   +   C     + +  +             + + L+  V+
Sbjct: 102 RGRGAA---TRTTIGDDAALGVLETCEAVNASAVVCDFTPLREGRATRATIARALECPVV 158

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRLTGPVTP 190
               D   ++P     +      +   P  +  +   + A   +  L V A      +  
Sbjct: 159 --EVDAHNVVPAWVASDKQEYAARTIRPKIRKKLDEFLTAPTVMDDLVVRAAGSLAQMET 216

Query: 191 SNIPRFFDYPFQAID----PMFPIGEQNALHIL-----RKFCKEKVYYYVEQRDIPAIQ- 240
                  D                GE+ AL  L       F  +++  Y E R+ P    
Sbjct: 217 DWAALVADARANGAHVPEVHWIKPGEKAALASLLDPSVDSFLPDRLALYGE-RNKPTSPR 275

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYP 299
             S+LSPYL+ G L+PR+      +      I       S+L EL I RE   +   + P
Sbjct: 276 AVSRLSPYLNHGQLAPRRAAWEAVQL---RGIVADEAIDSYLEELIIRRELSDNFCLYNP 332

Query: 300 SVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                +    W +        +  +  +     ++  T   + +AA ++L  +G MH  +
Sbjct: 333 DYDSLRGASQWAQDSLALHASDKREYVYDYATLERAKTHDELWNAAQKELYHLGRMHGFM 392

Query: 354 RMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------V 403
           RM  A  +++      +      +   +  LDG   +   G  W+ +  +D         
Sbjct: 393 RMYWAKKILEWTPSPEIALETAIQLNDTYALDGLDPNGYVGCMWSIAGVHDQGWKERAVF 452

Query: 404 PYFRIFNPTIQGKRFDPQGTFIRH 427
              R  N     ++FD  G ++R 
Sbjct: 453 GKVRYMNYAGCKRKFD-IGEYVRR 475


>gi|77964002|gb|ABB13342.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
          Length = 304

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 9/113 (7%)

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PT
Sbjct: 1   DTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPT 60

Query: 438 QYIHAPHSWLDKN------DLSLNYPLPIVDHKKACHH---TLNQYYAAKKQS 481
           ++IH P    +        +L  NYPLPIV+  +A       L++ +  +  S
Sbjct: 61  EWIHHPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWELEAAS 113


>gi|303283462|ref|XP_003061022.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457373|gb|EEH54672.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 457

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 83/461 (18%), Positives = 142/461 (30%), Gaps = 55/461 (11%)

Query: 13  WLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           W   D R+ DN AL  A     + +  V  VF+  P        SARQ  F+   L ++ 
Sbjct: 1   WCSRDQRVDDNWALLHALSVAKSRNVPVAIVFVLVPSFA---SASARQYAFMLRGLREMA 57

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ- 128
           K+     + F   +      +     +  L   +    ++      E R D  L   L+ 
Sbjct: 58  KTCEATRLPFHLVRGDANPAAAAAAAATRLDASLVVTDFSPLRAPREWRND--LSDALKR 115

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTP------------------FRKALIQNLV 170
             V     D   ++P     N      +   P                   R A +    
Sbjct: 116 ANVTVHEVDAHNVVPVWEASNKREYAARTIRPRITKRLAAFLTSFPTRDAVRDAALAAAA 175

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHIL----RKFCK 224
                 +P P       +      R      + + P    P GE  A   L      F  
Sbjct: 176 SPRATDVPTPERVDWDALIADARGRDGGVVPETLHPTRRKPPGEAAARRALVGGPDAFLP 235

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            ++  Y ++ D    +  S LSPYL  G LS ++      E          + A +++ E
Sbjct: 236 SRLAMYDKRNDPNVPRALSGLSPYLHFGQLSAQRV---ALETNAARTEATAAAADAFVEE 292

Query: 285 -LIWREFYRHLMAFYPSVCMGKPFIPW------TEKIEWNKDSHLLQAWKQGYTGFPIID 337
            ++  E   +     P+         W          +    ++ L+  + G T   + +
Sbjct: 293 VVVRSELSDNYCFHEPNYDNINGASGWAIESLRLHAEDARDPAYSLEELESGSTRDELWN 352

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKD----LLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           AA  ++   G MH  LRM  A  +++       V             LDG  ++   G  
Sbjct: 353 AAQLEMVHFGAMHGFLRMYWAKKILEWTAEGPEVALERAIYLNDKYQLDGRDSNGYVGCM 412

Query: 394 WAASTGNDSV-------PYFRIFNPTIQGKRFDPQGTFIRH 427
           WA    +D+           R  N     ++F     ++  
Sbjct: 413 WAICGVHDNAWKERDVFGKIRYMNYNGCKRKFKID-EYVER 452


>gi|15824991|gb|AAL09563.1|AF363632_1 cryptochrome 1 [Coturnix japonica]
          Length = 168

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 12/177 (6%)

Query: 7   MSVH-LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M V+ + W R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L
Sbjct: 1   MGVNAVHWFRKGLRLHDNPALRECIRGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCL 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             +  +L +        +        +       +  + KL      E     RD  ++K
Sbjct: 60  EDLDANLRKLNSRLFVIRG----QPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKK 115

Query: 126 RL-QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
              +  V         L      L+  +++     P      Q L+   +  L +PA
Sbjct: 116 LASEAGVEVIGRISHTLYD----LDKIIELNGGQPPLTYKRFQTLISR-MEPLEMPA 167


>gi|296135394|ref|YP_003642636.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
 gi|295795516|gb|ADG30306.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
          Length = 396

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 80/196 (40%), Gaps = 9/196 (4%)

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAF 279
           R     +   Y   R+    +  ++LSPYL+ G L  R     L                
Sbjct: 20  RSLAAVRPADYARSRNHLEGR-VTRLSPYLTHGFLGLRDVVQHLSMRH------GLGLQD 72

Query: 280 SWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
             L EL WR F++ +        +           +      L    ++G T  P+ID A
Sbjct: 73  KLLQELGWRAFFQQVWRHEGKGILQSQHPGPL--PDRAYAPALPADLREGRTDVPVIDQA 130

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTG 399
           +R L   G++HN  RM  AS+ V    V WR G ++ ++ LLDGDLASN+  WQW A TG
Sbjct: 131 VRTLYATGYLHNHARMWLASYTVHLRKVHWRAGADWMVAHLLDGDLASNHLSWQWVAGTG 190

Query: 400 NDSVPYFRIFNPTIQG 415
           +     F   N     
Sbjct: 191 SSKPYLFNADNVAKYA 206


>gi|313620255|gb|EFR91705.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378]
          Length = 158

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 12/167 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY A    D  +I +F   PEQ+ +    +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHAXXEED--LILLFQVNPEQFIK---GSPSHQAFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           Q+ L++       H    F + IE L     +     K+F+NR        RD+      
Sbjct: 57  QQELNKN-----THLQIMFGEPIELLKQLKEKIPTWDKVFFNRDETGYGASRDEAARAFF 111

Query: 128 QHR-VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
             + +   S+ DS L     +   A + YK++TP+ K   + + +  
Sbjct: 112 ADKEITVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMP 158


>gi|77964000|gb|ABB13341.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
          Length = 301

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 9/109 (8%)

Query: 382 DGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
           D DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PT++IH
Sbjct: 2   DADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIH 61

Query: 442 APHSWLDKN------DLSLNYPLPIVDHKKACHH---TLNQYYAAKKQS 481
            P    +        +L  NYPLPIV+  +A       L++ +  +  S
Sbjct: 62  HPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWELEAAS 110


>gi|33309543|gb|AAQ03212.1|AF410956_1 cryptochrome 1-like protein [Passer domesticus]
          Length = 183

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 9/170 (5%)

Query: 14  LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLS 73
            R  LR+ DN AL      +D  V  V+I  P       +   +  F+   L  +  +L 
Sbjct: 1   FRKGLRLHDNPALRECIQGADT-VRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDANLR 59

Query: 74  QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC 133
           +        +        +       +  + KL      E     RD  ++K      + 
Sbjct: 60  KLNSRLFVIRG----QPADVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGVE 115

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI 182
                S  L     L+  +++     P      Q L+ + +   +PV  I
Sbjct: 116 VIVRISHTLY---DLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETI 162


>gi|260783748|ref|XP_002586934.1| hypothetical protein BRAFLDRAFT_103595 [Branchiostoma floridae]
 gi|229272065|gb|EEN42945.1| hypothetical protein BRAFLDRAFT_103595 [Branchiostoma floridae]
          Length = 426

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/431 (14%), Positives = 128/431 (29%), Gaps = 42/431 (9%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
            W+  D R+ DN AL  A   +    + +++      +    + R   F+   L +V+K 
Sbjct: 16  YWMSRDQRVQDNWALLFAQRLAMKHKVPLYVCFCLVPKFLDANIRHYGFMLKGLEEVEK- 74

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
                         ++     +L  +  ++ +  +  +       ++    L  +L   V
Sbjct: 75  ----------FPSPDWLCC-GFLPGFVDEKNIGGVVTDFSPLRTPLKWVHDLAGKLPSDV 123

Query: 132 ICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLTGPVT 189
                D   ++P              +       L   L +    S  P P      P  
Sbjct: 124 PFVQVDAHNIVPCWEASPKQEYGARTIRGKIHNQLSSYLTEFPPVSQHPHPPKDKPEPTD 183

Query: 190 PSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY 248
            +             +  +   G    L +L  FCK+++  +   R+ P  +  S LSP+
Sbjct: 184 WAAARASLKVDMTVAEVTWATPGTTGGLRMLESFCKQRLKNFGTDRNNPNKRALSNLSPW 243

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFI 308
           +  G +S ++C   +K+          +     +      + +            G    
Sbjct: 244 IHFGQISVQRCILTVKKYRSKYKESVDAYIEEAIIRRELSDNFCFYNHDKYDSIKGASAW 303

Query: 309 PWTEKIEWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                 +   D       ++      T   + +AA              +++  +F   +
Sbjct: 304 AQKTLKDHAGDKREYLYSREQLEQAKTHDDLWNAA--------------QVLDINFSCAN 349

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQGKR 417
           LL  W   +       LDG   +   G  W+    +D            R  N     ++
Sbjct: 350 LLSIWE-VQYSIDKYSLDGRDPNGYVGCMWSICGIHDQGWAERPVFGKIRFMNYNGCKRK 408

Query: 418 FDPQGTFIRHW 428
           FD    F+  +
Sbjct: 409 FDV-AQFVTKY 418


>gi|164455180|dbj|BAF97093.1| CPD photolyase [Oryza barthii]
          Length = 506

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 149/452 (32%), Gaps = 46/452 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH--FIYASLLQV 68
           + W+  D R+ DN AL  A   + A    + +A     R   +SAR+    F+   L ++
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRL 100

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRL 127
               + + + F       F      + +   +   + L  +           D ++    
Sbjct: 101 AADAASRHLPFFL-----FTGGPAEIPALVRRLGASTLVADFSPLRPVREALDAVVGDLR 155

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V     D   ++P       + +M      FR  + + + +  +    +PA+   
Sbjct: 156 REAPGVAVHQVDAHNVVPVW---TASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPW 212

Query: 186 GPVTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQR 234
               P        I R         +  +   GE+ A+  L      F  +++  Y   R
Sbjct: 213 DREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETDR 272

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + P      S LSPYL  G +S ++C    K+      + PKS        ++ RE   +
Sbjct: 273 NDPTKPRALSALSPYLHFGHISAQRCALEAKKC---RHLSPKSVDAFLEELVVRRELADN 329

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIG 347
              + P          W  K   +  +   +        +   T  P+ +A+  ++   G
Sbjct: 330 FCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHG 389

Query: 348 WMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-- 402
            MH  +RM  A  +++             Y      +DG   S   G  W+    +D   
Sbjct: 390 KMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGW 449

Query: 403 -----VPYFRIFNPTIQGKRFDPQG--TFIRH 427
                    R  N     ++FD     ++++ 
Sbjct: 450 KERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481


>gi|32475803|ref|NP_868797.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH 1]
 gi|32446346|emb|CAD76174.1| probable deoxyribodipyrimidine photolyase [Rhodopirellula baltica
           SH 1]
          Length = 837

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 84/468 (17%), Positives = 155/468 (33%), Gaps = 56/468 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W+ N LR  +N AL AA   +    + + +      +    S R   FI      V
Sbjct: 29  MVLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDV 88

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L  +GI + +H   +       L   C +     +  + +  +  +       +RL+
Sbjct: 89  QRELQARGITYAFHLERHGQRGPH-LRDLCRR---AAVLVSEEMPVAPIACW---VERLR 141

Query: 129 HRVICK--SFDDSVLLP---PGSILNHALQMYKVYT---PFRKALIQNLVQADLRSLPVP 180
             V       D S ++P     ++   A +  ++       R +     + A+L      
Sbjct: 142 SLVTTPIMLVDTSCIVPSQSVDAVPTRAFEFRRLIQSELENRLSRPYEELPANLLPAKFT 201

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQR 234
                 P+   ++          +D         P G +       +F ++ +  Y  QR
Sbjct: 202 GPLGFAPIDLQDVDLAELISQCKVDHSVGPVADTPGGMRAGYARWDRFREKSLTQYSRQR 261

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREF-Y 291
           + P    G S+LS YL  G++SP +                  GA  +++EL +WRE  +
Sbjct: 262 NHPDDPLGVSRLSGYLHYGMISPFRI----------AREAAAMGARKYVDELVVWREMVF 311

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------LLQAWKQGYTGFPIIDAAMRQLNT 345
           R  +     +        W+ +                +   +G +   + + A R L  
Sbjct: 312 RFCLEHVEDLDTMAVLPKWSRETLEKHAEDSRDEVLDWETLARGKSSQSLWNLAQRSLLR 371

Query: 346 IGWMHNRLRMITASFLVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
            G +H+ LRM      +       +      +      +DG    +  G  W+    +  
Sbjct: 372 HGELHHNLRMTWGKAFLAMTSQPCQALAQCIDLNHRYAIDGRSPISYSGILWSFGQFDRP 431

Query: 403 VPYF-------RIFNPTIQGKRFD-PQGTFIRHWL--PELNNVPTQYI 440
                      R      QGKR D PQ   +  W+  P    +P   I
Sbjct: 432 SEPEQPIYGKVRSRTIEEQGKRIDQPQ---VAEWINRPVAAGLPRVAI 476


>gi|156383451|ref|XP_001632847.1| predicted protein [Nematostella vectensis]
 gi|156219909|gb|EDO40784.1| predicted protein [Nematostella vectensis]
          Length = 159

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 10/154 (6%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M A    S H  W R DLR+ DN AL  A  N+D     VF+ +   +     S  +  F
Sbjct: 1   MDAARHTSCH--WFRKDLRLHDNPALKDALDNADCF-YGVFVLS--NFHPSITSGNRWKF 55

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   L  +  SL + G        S     +E         +VTKL +    E    +RD
Sbjct: 56  LLQCLQDLNNSLEELGSKLIILTGSP----VEIFPKLLHSLKVTKLTFEVDTEPFAQQRD 111

Query: 121 KLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQ 153
            ++    +   I  K+     L    S+++H  +
Sbjct: 112 SVISHIARSAGIEVKTHASHTLYDIESLVSHCNE 145


>gi|301090094|ref|XP_002895279.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans
           T30-4]
 gi|262100969|gb|EEY59021.1| deoxyribodipyrimidine photolyase, putative [Phytophthora infestans
           T30-4]
          Length = 582

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 81/468 (17%), Positives = 151/468 (32%), Gaps = 72/468 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFI---------------ATPEQWRQHGISA 55
           L W++  +R   N AL  A   ++   + + +                  ++W+   I  
Sbjct: 39  LYWMQTSVRTKHNYALEYAVAAANELKLPLHVVYLFPDRSVTPKLQSFQDDEWKAEAIQD 98

Query: 56  ---------RQSHFIYASLLQVQKSLSQKGI---VFQYHQCSNFDDSIEWLDSYCLQQRV 103
                    R + F    L    + L+ +G+   VF +    N   + + L  +C  ++ 
Sbjct: 99  ANAHAFATERHALFALEGLTDAYQRLASRGLNLDVFHHQHKENERPTRDELLEFC-ARKA 157

Query: 104 TKLFYNRQY-EINEVRRDKLLE--KRLQHRVICKSF-----DDSVLLPPGSILNHALQMY 155
             +  +  Y     V  DKL+   +         SF     +  V++P   + +      
Sbjct: 158 ALVVTDCPYLRPWRVALDKLVSSVEDKGDAGASSSFGIVQIEGDVVVPAAVVTDKEEYAA 217

Query: 156 KVYTPFRKALIQNLVQ----------------------ADLRSLPVPAIRLTGPVTPSNI 193
           +   P     +   +                        +   L    +  +  V  +  
Sbjct: 218 RTIRPKITKHLDRYIAPLEYMTLDPAYYTEGKSLLAVLNEPEQLKPLDVTDSEAVASTLE 277

Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFC-KEKVYYYVEQRDIPAIQGTSQLSPYLSIG 252
               D   +A+   F  GE+ A    +KF   + +  Y  +R+ P++   S LS YL  G
Sbjct: 278 LLDVDRSVKAVGWHFKGGEKAASACAKKFLTADNLVSYATKRNEPSLDAGSDLSLYLRYG 337

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWT 311
            +   +      +     + + K G  S+L ELI  RE   +L+ +          +P  
Sbjct: 338 HICVVRVVLAAHKL--KGVKRAKEGLASFLEELIVRRELSVNLVVYNQDNYDSMCCLPSY 395

Query: 312 EKI---EWNKDSHLLQAWKQG----YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            +I   E   D       ++      TG    +AA R+L   G MH  +RM     L++ 
Sbjct: 396 AQITLQEHADDKRDQLYSREQLENYQTGDRFWNAAQRELVVTGKMHGYMRMYWGKKLLEW 455

Query: 365 LLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
                       +      LD   A++  G  W     +       IF
Sbjct: 456 TRTPEDGFNAALVLNNKYALDAPDANSYAGVAWTFGKHDQGWKERPIF 503


>gi|325187408|emb|CCA21946.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
          Length = 532

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 86/500 (17%), Positives = 161/500 (32%), Gaps = 83/500 (16%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAV---FIAT-----PEQWRQHGISA 55
            T+    L W++  +R T N +L  A   + A  + +   +  +     PE+      +A
Sbjct: 33  DTSAKYLLYWMQTSVRTTHNYSLEYAIEAATALSLPLQVIYFFSDRSSVPEEQLSRDPNA 92

Query: 56  ------RQSHFIYASLLQVQKSLSQKGIVFQY------------HQCSNFDDSIEWLDSY 97
                 R + F    L   +  L ++GI F+              +  +  D+  +    
Sbjct: 93  FAFSTERHAKFALEGLASTKMRLKERGIDFKIILYRKPTHESENEENEDQSDATRYHLLE 152

Query: 98  CLQQRVTKLFYNRQY-EINEVRRDKLLEKRLQHRVIC--KSFDDSVLLPPGSILNHALQM 154
              +    +  ++ Y   +     +  E  L+ + +      +  V++P     +     
Sbjct: 153 KCARDALLVVTDKPYIRFSANDTMRCAEYALERQKLWGLVQVEGDVVVPSAITSDKEEYS 212

Query: 155 YKVYTPF-------------RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
            +   P              ++ + + +  +D + L    + L      S        P 
Sbjct: 213 ARTIRPKVTRQLTKFLVELKKQDISEKIKSSDSKLLCFLPLELFTKEKNSADCVLEIDPT 272

Query: 202 QAIDPM--------------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           +  + +                 GE  A    + F K K+  Y E R+ P   G+S LS 
Sbjct: 273 RKSEVLDALDLDRSVVSVDSIIGGEDEAERHTQDFAKNKLSKYAEARNEPGADGSSNLSC 332

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           YL  G +SP   W  L  + +D      S        ++ RE   + + + P+       
Sbjct: 333 YLHYGHISP--VWIALLVKNIDNENSKNSRDAFLEEMIVRRELSVNFVVYNPNFYDSFEG 390

Query: 308 IPWTEKIEWNKDS-------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           IP   K   N          + L   + G T     +AA  ++   G MH  +RM    +
Sbjct: 391 IPNFAKKTLNDHRGDKRPHIYSLDDLESGRTDDNYWNAAQLEVVHSGQMHGYMRM----Y 446

Query: 361 LVKDLLVDWRIGEEYFMSQLL-------DGDLASNNGGWQWAASTGNDSV------PYFR 407
             K +L      EE F   +        D    ++  G  W     +            R
Sbjct: 447 WGKKILEWSETPEEAFKRTVYLNNKYSLDAPHPNSYTGVAWTFGKHDQGWREREIFGKVR 506

Query: 408 IFNPTIQGKRFDPQGTFIRH 427
             N T   ++FD  G +I+ 
Sbjct: 507 CMNETGLKRKFDMDG-YIQK 525


>gi|148259631|ref|YP_001233758.1| deoxyribodipyrimidine photolyase-like protein [Acidiphilium cryptum
           JF-5]
 gi|146401312|gb|ABQ29839.1| deoxyribodipyrimidine photo-lyase family protein (cryptochrome)
           [Acidiphilium cryptum JF-5]
          Length = 396

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 54/230 (23%), Positives = 85/230 (36%), Gaps = 16/230 (6%)

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPR 257
           + +D          L  L  F       Y   R+           S+LSP+L   +L+  
Sbjct: 2   RGMDAEPIPTRDAGLDRLAAFLPRAGAAYAAGRNTDPGPERKGAVSRLSPWLRHRLLTE- 60

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIE 315
                  E            A  ++ E+ WR +++  +   P V             ++ 
Sbjct: 61  ------AEVARAAFAAHGEAAAKFIEEVGWRTYWKGWLEQRPGVYDLYRAGLRRAENRLA 114

Query: 316 WNKD-SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
             +           G TG    D+  R++    ++HN  RM  AS  +  L + W +G +
Sbjct: 115 TEEGLRRAFHDACAGQTGIDCFDSWAREIVARNYLHNHARMWFASIWIFTLRLPWELGAD 174

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYF-RIFNP-TIQGKRFDPQG 422
           +F+  LLDGD+ASN   W+W A        Y  R  N     G RFDP+G
Sbjct: 175 FFLRHLLDGDIASNTLSWRWVAGLHTPGKHYLARAENIARFTGGRFDPRG 224


>gi|327540991|gb|EGF27547.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
          Length = 837

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 83/468 (17%), Positives = 154/468 (32%), Gaps = 56/468 (11%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
           + L W+ N LR  +N AL AA   +    + + +      +    S R   FI      V
Sbjct: 29  MVLYWMHNALRGHENPALDAAIWMAHKTGLPLLVYHGLSEKYPYASDRHHAFIMQGARDV 88

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           Q+ L  +GI + +H   +       L   C +     +  + +  +  +       +RL+
Sbjct: 89  QRELQARGITYAFHLERHGQRGPH-LRDLCRR---AAVLVSEEMPVAPIACW---VERLR 141

Query: 129 HRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT- 185
             V       D S ++P  SI +        +    ++ ++N +      LP   +    
Sbjct: 142 SLVTTPIMLVDTSCIVPSQSI-DAVPTRAFEFRRLIQSDLENRLSRPYEELPANLLPAKF 200

Query: 186 ------GPVTPSNIPRFFDYPFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                  P+   ++          +D         P G +       +F ++ +  Y  Q
Sbjct: 201 TGSLGFAPIDLQDVDLAELISQCKVDHSVGPVADTPGGTRAGYARWDRFREKSLTQYSRQ 260

Query: 234 RDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREF- 290
           R+ P    G S+LS YL  G++SP +                  GA  +++EL +WRE  
Sbjct: 261 RNHPDDPLGVSRLSGYLHYGMISPFRI----------AREAAAMGARKYVDELVVWREMV 310

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------LLQAWKQGYTGFPIIDAAMRQLN 344
           +R  +     +        W+ +                +   +G +   + + A R L 
Sbjct: 311 FRFCLEHVEDLDTMAVLPKWSRETLEKHAEDSRDEVLDWETLARGKSSQSLWNLAQRSLL 370

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWR---IGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
             G +H+ LRM      +       +      +      +DG    +  G  W+    + 
Sbjct: 371 RHGELHHNLRMTWGKAFLAMTSQPCQALAQCIDLNHRYAIDGRSPISYSGILWSFGQFDR 430

Query: 402 SVPYF-------RIFNPTIQGKRFDPQGTFIRHWL--PELNNVPTQYI 440
                       R      QGKR D     +  W+  P    +P   I
Sbjct: 431 PSEPEQPIYGKVRSRTIEEQGKRIDQSQ--VAEWINRPVAAGLPRVAI 476


>gi|218887026|ref|YP_002436347.1| deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757980|gb|ACL08879.1| Deoxyribodipyrimidine photo-lyase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 494

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 131/457 (28%), Gaps = 45/457 (9%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A       L W+  + R  DN AL  A   +      + +         G + RQ  F+ 
Sbjct: 36  ARPGRGPVLYWMHREHRARDNWALLHAHAEAARLGAPLAVVWCLANSFLGATIRQFGFLL 95

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
             + + Q+ L+  GI     +     +  E +  Y        +  +      +      
Sbjct: 96  RGMEETQRHLAAAGIPLVVLRG----NPPEEVVRYARSANAALVVTDFDVLRLKRTWLAS 151

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI-QNLVQADLRSLPVPA 181
             + L         D   ++P            +   P    L+ + L            
Sbjct: 152 AARGLAGVCSLHEVDGRNVVPCRVASPKREYAARTLRPKIHRLLPEFLTPIPALPPASSV 211

Query: 182 IRLTGPVTPSNIP-----------RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
              +    P                  +       P    GE  A   L  F   +++ Y
Sbjct: 212 SGASSVPVPDVDWASLRDNLAVDRTVAEVGPLPGMPDIAPGEDAARAALDDFIHARLHRY 271

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WRE 289
              R+ P   G S LSPYL  G+LS      R        L  P     S+L ELI  RE
Sbjct: 272 H-LRNDPNAHGVSGLSPYLHFGMLS----AQRAALAAQAHLEAPDDCRASFLEELIVRRE 326

Query: 290 FYRHLMAF---------YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
              +             +P   +        +      D   L       T  P+ +AA 
Sbjct: 327 LADNFCLHAQDYDAVTCFPDWALATLDKHRHDPRPALYDEAQL---AAARTADPLWNAAQ 383

Query: 341 RQLNTIGWMHNRLRMITAS---FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAS 397
            ++   G MH  LRM  A              R          LDG  ++   G  W+A 
Sbjct: 384 TEMVCAGRMHGYLRMYWAKQILLWSPTPEDAVRTAVTLNDRYFLDGRDSNGYTGIAWSAG 443

Query: 398 TGNDSVPYFRIFNPTIQGK-------RFDPQGTFIRH 427
             +D     R    TI+         +FD  G +IR 
Sbjct: 444 GVHDRPWGERPVQGTIRSMTYNGARSKFDV-GAYIRR 479


>gi|213022877|ref|ZP_03337324.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 84

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/81 (46%), Positives = 58/81 (71%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H ++ RQ+ FI A L 
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLN 60

Query: 67 QVQKSLSQKGIVFQYHQCSNF 87
           +Q +L++KGI   +H+ ++F
Sbjct: 61 ALQTALAEKGIPLLFHEVADF 81


>gi|77920307|ref|YP_358122.1| deoxyribodipyrimidine photolyase [Pelobacter carbinolicus DSM 2380]
 gi|77546390|gb|ABA89952.1| Deoxyribodipyrimidine photo-lyase type II [Pelobacter carbinolicus
           DSM 2380]
          Length = 490

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 81/469 (17%), Positives = 149/469 (31%), Gaps = 54/469 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+    R++ N AL  A   +      + +           + R   F    +    +
Sbjct: 25  LYWMNATRRLSWNFALQRALSWARKLDRPLLVVETLPCDHPHANLRHHAFALDGMADNAR 84

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            ++     +          +IE + +      V  +  + +     +   + L  RL  R
Sbjct: 85  YMADHPATYYPFVEDQPGQNIELIAALAKHACV--VLCDLRPLRESLGETEQLAGRLSGR 142

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
              +  D + +LP  +        Y +    ++ L+ +L+   L            P  P
Sbjct: 143 --LERVDSNGILPLLAADREFTTAYSLRRFLQRHLLPHLLNMPLPEPLAEHTLPPCPAVP 200

Query: 191 SNIP----------------RFFDYPFQAIDPMFP--IGEQNALHILRKFCKEKVYYYVE 232
           S I                 R  + P     P  P   G + A   L  F +E +  YV 
Sbjct: 201 SAIRKRWPAADRQLLTEDRSRLHNLPIGQNTPAVPTKGGSEAARKALDLFLREHLDLYVA 260

Query: 233 QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE--------------FVDLLIKPKSGA 278
            R+ P    TS LSPYL  G +S  +   RL +                        + A
Sbjct: 261 HRNQPQRDVTSGLSPYLRWGHISSHEIVQRLLDREGWHPSDLGLETRGQRSGWWGVGADA 320

Query: 279 FSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYT 331
            ++L++L+ WRE               +    W +        +     + L+ ++ G T
Sbjct: 321 EAFLDQLVTWRELGHLFCFKRHDYDRMESLPAWAQTTLQDHMQDPRPYLYSLEEFQAGRT 380

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASN 388
             P+ +AA  QL   G +HN LRM+    +++      +      E      LDG   ++
Sbjct: 381 HDPLWNAAQMQLVREGRLHNYLRMLWGKKILQWSPTPELALATMIELNDRFALDGCDPNS 440

Query: 389 NGGWQWAASTGNDSVPY-------FRIFNPTIQGKRFDPQGTFIRHWLP 430
             G  W     + +           R  +     ++      +I  + P
Sbjct: 441 YSGIGWVLGRFDRAWGPQRPVFGKIRYMSSRNTARKVAVD-KYIARYTP 488


>gi|108859897|emb|CAK26685.1| putative cryptochrome [Picea abies]
          Length = 259

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           DL  +  GWQ+ +    D     RI NP  +G +FDP G ++R WLPEL  +PT++IH P
Sbjct: 1   DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60

Query: 444 HSWLDK------NDLSLNYPLPIVDHKKACHH 469
                        +L  NYPLPIV+   A   
Sbjct: 61  WDAPRAVLQAAGVELGSNYPLPIVEISTAKER 92


>gi|108859915|emb|CAK26694.1| putative cryptochrome [Picea abies]
 gi|108859929|emb|CAK26701.1| putative cryptochrome [Picea abies]
 gi|108859931|emb|CAK26702.1| putative cryptochrome [Picea abies]
 gi|108859945|emb|CAK26709.1| putative cryptochrome [Picea abies]
 gi|108859969|emb|CAK26721.1| putative cryptochrome [Picea abies]
          Length = 259

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           DL  +  GWQ+ +    D     RI NP  +G +FDP G ++R WLPEL  +PT++IH P
Sbjct: 1   DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60

Query: 444 HSWLDK------NDLSLNYPLPIVDHKKACHH 469
                        +L  NYPLPIV+   A   
Sbjct: 61  WDAPRAVLQAAGVELGSNYPLPIVEISTAKER 92


>gi|326403400|ref|YP_004283481.1| hypothetical protein ACMV_12520 [Acidiphilium multivorum AIU301]
 gi|325050261|dbj|BAJ80599.1| hypothetical protein ACMV_12520 [Acidiphilium multivorum AIU301]
          Length = 393

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 82/220 (37%), Gaps = 16/220 (7%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEF 267
               L  L  F       Y   R+           SQLSP+L   +L+         E  
Sbjct: 9   RDAGLDRLAAFLPRAGAAYAAGRNTDPGPERKGAVSQLSPWLRHRLLTE-------AEVA 61

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV--CMGKPFIPWTEKIEWNKD-SHLLQ 324
                     A  ++ E+ WR +++  +   P V             ++   +       
Sbjct: 62  RAAFAAHGEAAAKFIEEVGWRTYWKGWLEQRPGVYDLYRAGLRRAENRLATEEGLRRAFH 121

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
               G TG    D+  R++    ++HN  RM  AS  +  L + W +G ++F+  LLDGD
Sbjct: 122 DACAGRTGIDCFDSWAREIVARNYLHNHARMWFASIWIFTLRLPWELGADFFLRHLLDGD 181

Query: 385 LASNNGGWQWAASTGNDSVPYF-RIFNP-TIQGKRFDPQG 422
           +ASN   W+W A        Y  R  N     G RFDP+G
Sbjct: 182 IASNTLSWRWVAGLHTPGKHYLARAENIARFTGGRFDPRG 221


>gi|108859877|emb|CAK26675.1| putative cryptochrome [Picea abies]
 gi|108859895|emb|CAK26684.1| putative cryptochrome [Picea abies]
 gi|108859905|emb|CAK26689.1| putative cryptochrome [Picea abies]
 gi|108859913|emb|CAK26693.1| putative cryptochrome [Picea abies]
 gi|108859919|emb|CAK26696.1| putative cryptochrome [Picea abies]
 gi|108859947|emb|CAK26710.1| putative cryptochrome [Picea abies]
 gi|108859971|emb|CAK26722.1| putative cryptochrome [Picea abies]
          Length = 259

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           DL  +  GWQ+ +    D     RI NP  +G +FDP G ++R WLPEL  +PT++IH P
Sbjct: 1   DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60

Query: 444 HSWLDK------NDLSLNYPLPIVDHKKACHH 469
                        +L  NYPLPIV+   A   
Sbjct: 61  WDAPRAVLQAAGVELGSNYPLPIVEISTAKER 92


>gi|108859871|emb|CAK26672.1| putative cryptochrome [Picea abies]
 gi|108859873|emb|CAK26673.1| putative cryptochrome [Picea abies]
 gi|108859875|emb|CAK26674.1| putative cryptochrome [Picea abies]
 gi|108859879|emb|CAK26676.1| putative cryptochrome [Picea abies]
 gi|108859881|emb|CAK26677.1| putative cryptochrome [Picea abies]
 gi|108859883|emb|CAK26678.1| putative cryptochrome [Picea abies]
 gi|108859885|emb|CAK26679.1| putative cryptochrome [Picea abies]
 gi|108859887|emb|CAK26680.1| putative cryptochrome [Picea abies]
 gi|108859889|emb|CAK26681.1| putative cryptochrome [Picea abies]
 gi|108859891|emb|CAK26682.1| putative cryptochrome [Picea abies]
 gi|108859893|emb|CAK26683.1| putative cryptochrome [Picea abies]
 gi|108859899|emb|CAK26686.1| putative cryptochrome [Picea abies]
 gi|108859901|emb|CAK26687.1| putative cryptochrome [Picea abies]
 gi|108859903|emb|CAK26688.1| putative cryptochrome [Picea abies]
 gi|108859907|emb|CAK26690.1| putative cryptochrome [Picea abies]
 gi|108859909|emb|CAK26691.1| putative cryptochrome [Picea abies]
 gi|108859911|emb|CAK26692.1| putative cryptochrome [Picea abies]
 gi|108859917|emb|CAK26695.1| putative cryptochrome [Picea abies]
 gi|108859921|emb|CAK26697.1| putative cryptochrome [Picea abies]
 gi|108859923|emb|CAK26698.1| putative cryptochrome [Picea abies]
 gi|108859925|emb|CAK26699.1| putative cryptochrome [Picea abies]
 gi|108859927|emb|CAK26700.1| putative cryptochrome [Picea abies]
 gi|108859933|emb|CAK26703.1| putative cryptochrome [Picea abies]
 gi|108859935|emb|CAK26704.1| putative cryptochrome [Picea abies]
 gi|108859937|emb|CAK26705.1| putative cryptochrome [Picea abies]
 gi|108859939|emb|CAK26706.1| putative cryptochrome [Picea abies]
 gi|108859941|emb|CAK26707.1| putative cryptochrome [Picea abies]
 gi|108859943|emb|CAK26708.1| putative cryptochrome [Picea abies]
 gi|108859949|emb|CAK26711.1| putative cryptochrome [Picea abies]
 gi|108859951|emb|CAK26712.1| putative cryptochrome [Picea abies]
 gi|108859953|emb|CAK26713.1| putative cryptochrome [Picea abies]
 gi|108859955|emb|CAK26714.1| putative cryptochrome [Picea abies]
 gi|108859957|emb|CAK26715.1| putative cryptochrome [Picea abies]
 gi|108859959|emb|CAK26716.1| putative cryptochrome [Picea abies]
 gi|108859961|emb|CAK26717.1| putative cryptochrome [Picea abies]
 gi|108859963|emb|CAK26718.1| putative cryptochrome [Picea abies]
 gi|108859965|emb|CAK26719.1| putative cryptochrome [Picea abies]
 gi|108859967|emb|CAK26720.1| putative cryptochrome [Picea abies]
 gi|108859973|emb|CAK26723.1| putative cryptochrome [Picea abies]
          Length = 259

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAP 443
           DL  +  GWQ+ +    D     RI NP  +G +FDP G ++R WLPEL  +PT++IH P
Sbjct: 1   DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60

Query: 444 HSWLDK------NDLSLNYPLPIVDHKKACHH 469
                        +L  NYPLPIV+   A   
Sbjct: 61  WDAPRAVLQAAGVELGSNYPLPIVEISTAKER 92


>gi|258541537|ref|YP_003186970.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632615|dbj|BAH98590.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635672|dbj|BAI01641.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638727|dbj|BAI04689.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641781|dbj|BAI07736.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644836|dbj|BAI10784.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647891|dbj|BAI13832.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650944|dbj|BAI16878.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653935|dbj|BAI19862.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
           3283-12]
          Length = 211

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 69/165 (41%), Gaps = 8/165 (4%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M    + +  LV LR+D R+ DN AL+AAC      V+  ++       Q     R + +
Sbjct: 1   MVDAHSPAPVLVLLRDDYRVADNPALHAACATGQ-PVLCAYVQDAAL--QDASGTRIADW 57

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
             A+  Q+  SL ++G                 + +       T +F+NR+Y+   +  D
Sbjct: 58  AQAACAQLATSLHEQGQTLFMLSGPTRLS----VPALAQAVHATDVFWNRRYDAPGIAAD 113

Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164
             +   L+   V   S    +L  P +I   A Q Y+V+T + +A
Sbjct: 114 TDVHASLKKQGVTVHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRA 158


>gi|149195752|ref|ZP_01872809.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera
           araneosa HTCC2155]
 gi|149141214|gb|EDM29610.1| deoxyribodipyrimidine photolyase-like protein [Lentisphaera
           araneosa HTCC2155]
          Length = 359

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 10/186 (5%)

Query: 230 YVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           Y   R+       S LS Y+S G++S R  ++ L +   DL          ++ EL WR+
Sbjct: 23  YGRTRNYLNG-AVSYLSAYISRGIISTRTVYDSLIKRGYDL-----EKIEKFVQELAWRD 76

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +++    ++ +              +    S L+           + + A++QL T G++
Sbjct: 77  YWQSQWNYHGAKINHDLRHSQMAYNKHGMPSRLVDEKCS----IQVFNTAIKQLKTTGYL 132

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HN +RM  A          W     +    L+DGD ASN   WQW A   N         
Sbjct: 133 HNHMRMYLAMSTCNIGGYHWHDPARWMYYHLIDGDWASNALSWQWVAGCLNGKKYIANQE 192

Query: 410 NPTIQG 415
           N     
Sbjct: 193 NINKYC 198


>gi|187478088|ref|YP_786112.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N]
 gi|115422674|emb|CAJ49201.1| deoxyribodipyrimidine photo-lyase [Bordetella avium 197N]
          Length = 407

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 96/247 (38%), Gaps = 22/247 (8%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
           FP   + AL  +  F       Y   R+       S+LSPYL+ G+              
Sbjct: 10  FPPTREAALARVAAF---DPAAYALTRNHLDG-AVSRLSPYLTHGL--LSLPELLGLNLQ 63

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
            D      +    W+ EL WR +++H+              P     E    + +     
Sbjct: 64  RDTQGFLNAVQHRWVMELGWRAYFQHVWDARGDDIFA-SLRPGPRPDE-AYATEMPPDIC 121

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
           +  TG P+ID A+R L   G++HN  R+  AS++V    V WR   ++ +  LLDGDL S
Sbjct: 122 EARTGLPVIDLAVRTLYASGYLHNHARLWLASYVVHARQVHWRCAADWLLGHLLDGDLGS 181

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWL 447
           N+  WQW A T +     F   N      RF P+  +           P   I AP+  L
Sbjct: 182 NHLSWQWVAGTASAKPYLFNAENV----ARFAPEAWY----------SPGTPIDAPYERL 227

Query: 448 DKNDLSL 454
           D     L
Sbjct: 228 DAMARGL 234


>gi|256071674|ref|XP_002572164.1| DNA photolyase [Schistosoma mansoni]
 gi|238657317|emb|CAZ28395.1| DNA photolyase, putative [Schistosoma mansoni]
          Length = 490

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 140/453 (30%), Gaps = 55/453 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAV--------FIATPEQWRQHGISARQSHFIY 62
           L W+  D R+  N     A       V  V        FIA PE         +      
Sbjct: 58  LYWMSRDQRVQGN-----AIQGYTFFVFLVLLISKEIIFIAQPEDI---SSGCKHRWSDE 109

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
            +L   Q    +K  +++ +   +  D  + L        V  L  +           K 
Sbjct: 110 NALFN-QTDRIEKNFLYETYVAKSVVDLAKLL-------NVGCLVTDFCPLRAPRSWVKK 161

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSI-LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
           +   L   +     D   ++P              + +   +   + L           +
Sbjct: 162 VTDELPDNIPFCEVDAHNIVPVWCGSEKREYSARTIRSKLFQQSPKFLTDFPPIIKHTCS 221

Query: 182 IRLTGPVTPSNIPRFF-----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            ++T    P N          D   + +D   P G Q  L +L +F  +++  +   R+ 
Sbjct: 222 DKITVLPPPVNWESILSDYVGDKSVKPVDWAVP-GTQAGLEVLYEFISKRLKKFDPHRND 280

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLM 295
           PA    S LSP+L  G ++P++    +    V +       A  ++ E    RE   +  
Sbjct: 281 PAHPALSGLSPWLHFGQIAPQRAVLEV----VAVQKHFGRSADIFIEECFNRRELAENFC 336

Query: 296 AFYPSVCMGKPFIPWTEK------IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
              P     K    W  +       +    ++     +   TG  + +AA RQL   G M
Sbjct: 337 FHTPFYDSIKGAYDWARESLMTHSTDKRDPAYSKTQMETAQTGDDLWNAAQRQLVLKGKM 396

Query: 350 HNRLRMITASFLVKDLLVDWR---IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS--- 402
           H  LR   A  +++              Y      LDG   +   G  WA    +D    
Sbjct: 397 HWFLRQYWAKKILEWCAEGPESAIQIAIYLNDRYSLDGTDPNGYVGIMWAICGVHDQGWP 456

Query: 403 ----VPYFRIFNPTIQGKRFDPQGTFIRHWLPE 431
                   R  N     ++F    TF+  + PE
Sbjct: 457 ERPIFGKIRYMNYKGCLRKFSVS-TFVSRY-PE 487


>gi|87304172|ref|ZP_01086694.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
 gi|87281427|gb|EAQ73501.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. WH 5701]
          Length = 180

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 12/183 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQW-----RQHGISARQSHFIYAS 64
            L W   DLR+ DN +L AA  +    ++ +++  P  +     +   +   +  F++ S
Sbjct: 3   TLYWFTRDLRLHDNASLLAASKSD--MLLCLYVVDPRWFAPGPLQSKAMGDHRWRFLWQS 60

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           L+ +++SL   G          F +    +        + ++  +R     E  + + ++
Sbjct: 61  LMALERSLRPLGQRLHI----AFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIK 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            RL   V  + F+   L   GS+     ++   ++ FRK + +   +   R        L
Sbjct: 117 DRLPKAV-FQQFETLSLFTEGSLPMALEELPDTFSQFRKQVEKTGDRCSERLRIRTLTAL 175

Query: 185 TGP 187
             P
Sbjct: 176 PPP 178


>gi|213422521|ref|ZP_03355587.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 102

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/103 (44%), Positives = 69/103 (66%), Gaps = 1/103 (0%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           ++ RQ+ FI A L  +Q +L++KGI   +H+ ++F+ SIE + + C Q  V+ LFYN QY
Sbjct: 1   MAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQY 60

Query: 113 EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY 155
           E NE +RD  +EK L   VIC+ FDDSV+L PG+++    +MY
Sbjct: 61  EFNERQRDAAVEKTLPS-VICEGFDDSVILAPGAVMTGNHEMY 102


>gi|313672005|ref|YP_004050116.1| deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312938761|gb|ADR17953.1| Deoxyribodipyrimidine photo-lyase [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 444

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 148/443 (33%), Gaps = 39/443 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQS 58
           K++      L W++   R+  N +L  A     + D  +  + +     +     + R  
Sbjct: 12  KSSKKGDYILYWMQGAFRVEYNHSLEFAKYLALSKDLPLKVLVVVD---FNYKDANYRHF 68

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F    +L++        I F            E +  Y        L  ++ Y    ++
Sbjct: 69  KFFIDGILELIDKFKDLKISFHVK----IGSFKEIVPQYSK--NADTLITDKAY----IK 118

Query: 119 RDKLLEKRL--QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLR 175
             K +   +  ++ +     D ++++P  +             P    L +  L    + 
Sbjct: 119 WLKDVRNEIYNKNDITIYEVDTNLMVPVQAASPKCEYGAYTIRPKIHKLKEKFLNDFVVF 178

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
                +  +   +   NI              F  GE  A  +LR F  EK  ++ E+R 
Sbjct: 179 DYKGRSYEVENDLNGLNIDDKLKSVHYLKPVDFIGGESKADKLLRDFLNEKYLFFAEKRG 238

Query: 236 IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLM 295
            P++   S LS YL  G +SP     ++ +E + +   PK+    +   ++ RE   +  
Sbjct: 239 DPSLDVESNLSFYLHFGFISP----IKILKEAIKIDTDPKNYETLFEQLVVRRELAHNFT 294

Query: 296 AFYPSVCMGKPFIPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
            +  ++     F+P          K +  K  + L+  +   T     +AA  +L   G 
Sbjct: 295 YYCDNISDLFSFLPNWAVKTVIEHKDDIRKYLYKLEDLENFKTHDKFWNAAQYELIHKGK 354

Query: 349 MHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           +HN +RM          +     ++I         LDG   +   G  W     + +   
Sbjct: 355 IHNYMRMYWGKKVIEWTESFEDAYKILIYLNDKYALDGRDPNGYAGIAWCFGMHDRAFQE 414

Query: 406 FRIFNPTIQG------KRFDPQG 422
            +IF            ++FD  G
Sbjct: 415 RKIFGKVRYMSENGLKQKFDMDG 437


>gi|308804061|ref|XP_003079343.1| DNA deoxyribodipyrimid (ISS) [Ostreococcus tauri]
 gi|116057798|emb|CAL54001.1| DNA deoxyribodipyrimid (ISS) [Ostreococcus tauri]
          Length = 529

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 94/473 (19%), Positives = 161/473 (34%), Gaps = 73/473 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHN---SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W++   R T N+AL  A      S   VIA+F +T         + R   F++  L +
Sbjct: 50  LLWVQASHRSTANEALETAVDRANVSGVPVIALFCSTANYPEA---NERHIGFMFEGLCE 106

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEW---------------LDSYCLQQRVTKLFYNRQY 112
           ++++L ++ I F    CS  +  I                 L     ++  T+       
Sbjct: 107 LREALERRKIAFYAVACSPPEAIIVASERAVEIVVDGAYLRLLRRWREELATRATC---- 162

Query: 113 EINEVRRDKLL----EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF------- 161
            + EV  D ++     K  +  V   +F   VL     ++    ++     P+       
Sbjct: 163 TVTEVETDCVVPQLSMKHARAEVAAATFRPKVLP----LIGKYTRVACAVLPYIYGALDD 218

Query: 162 --RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
             RK+    +V+ D+  L        G +    + R    P  +       G+  A   L
Sbjct: 219 ATRKSFESTIVEFDVLPLHRGVDACLGVLDTHGLVRDPKCPRVSSH---VGGQSQARAKL 275

Query: 220 RKFCKEKV-YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--S 276
             F  +K+   Y + R+ P +   S LSP++  G +S  +   +  E            +
Sbjct: 276 DAFLTKKMLSRYHKSRNDPTLCLQSHLSPHIHYGQISVVEIARKTLEFRDAHKEDADVCA 335

Query: 277 GAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPW---------TEKIEWNKDSHLLQAW 326
               +L+ELI  RE   +     P+         W          ++ EW       +  
Sbjct: 336 SIDVFLDELIVRRELAINFALRNPNYDTYDGLPTWAKETLEKHADDRREWTYTLEEFEC- 394

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDG 383
             G T   + +A+ RQL + G  HN LRM                WRI         LDG
Sbjct: 395 --GSTHDKLWNASQRQLVSTGKQHNYLRMYWGKKILEWSASPEEGWRIAMALNNRYSLDG 452

Query: 384 DLASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRFDPQGT--FIRHW 428
               +  G  W     +            R F+ +   K+F P G   ++  W
Sbjct: 453 RNFVSLTGVGWCFGLHDREFHEASITGTIRRFSESGMMKKF-PAGIKGYLERW 504


>gi|300708917|ref|XP_002996629.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01]
 gi|239605945|gb|EEQ82958.1| hypothetical protein NCER_100256 [Nosema ceranae BRL01]
          Length = 473

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 141/422 (33%), Gaps = 43/422 (10%)

Query: 16  NDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK 75
            DLR+ +N  ++ A + S      +FI  P   +    +  Q   I  ++  ++K   ++
Sbjct: 23  RDLRLLNNHCIHYAYNLSYHYQSQMFIGVP--IKDIKCNDVQYSLILENIEDLRKESIKQ 80

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICK 134
            +             ++ ++++    ++  +  +       +     ++    + ++ C 
Sbjct: 81  NLYLTI---------LDNVNTFVKTNKIKNIILDWSPLREHIAFCNNIKDLCTKDKLFCI 131

Query: 135 SFDDSVLLPPG--SILNHA-----LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
             D   ++P     +         +Q++K +  +        ++  +      +  +   
Sbjct: 132 QIDSHNIVPCKILDVYKRTSSSVKIQLFKHFFEYLNEYDDLQLEKSVNDSNFTSKNMKFI 191

Query: 188 VTPSNI---PRFFD----------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           +   +     +F D           P       +       L ++  F   K + Y E R
Sbjct: 192 INAWDTLEPHKFNDKKKVSSFKCNIPKYEPAKYYQGTYSAGLKVMDDFFNNKFHIYNECR 251

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHL 294
           + P + G S LSPY+ +G+LSP++      E+F         G  + +   IWRE   H 
Sbjct: 252 NNPDVDGLSNLSPYIHLGILSPQKIIKLAYEKFYKKDKDNLDGYVAEI--FIWRETSEHF 309

Query: 295 MAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTIGW 348
                        + W      E  KD       K+    G T     +AA  QL  +  
Sbjct: 310 CYHNKDYDNIMGALEWARDSLHEHAKDEREHLYTKEELEFGKTNDSFWNAAENQLLKLNK 369

Query: 349 MHNRLRMITASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           +H  +RM  A  LVK         +   E      +DG+  +   G  W      D    
Sbjct: 370 IHGYVRMYWAKQLVKWTKTPEEAVKIGIELNDKYSIDGNDPNGYTGVMWCICGTMDRGYK 429

Query: 406 FR 407
            R
Sbjct: 430 DR 431


>gi|220918322|ref|YP_002493626.1| DNA photolyase FAD-binding [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956176|gb|ACL66560.1| DNA photolyase FAD-binding [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 486

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 84/465 (18%), Positives = 139/465 (29%), Gaps = 54/465 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V L W+ +  R   N AL  A          V +  P +      S R   F+   +  
Sbjct: 21  AVVLHWMTSARRTRSNPALERAAELGRELGRPVLVVEPLRCGYPHASDRLHAFLLEGMRD 80

Query: 68  VQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
              +L+ + +   +   +    D  +E L +     R   +  +        +       
Sbjct: 81  NAAALAGRALYHPWVERRAGEGDGLLEALAA-----RACAVIADDFPTGFPAQAIHAAAA 135

Query: 126 RLQHRVICKSFDDSVLLP---PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           RL   V  ++ D S ++P    G     A    +         +  L   D  +   P  
Sbjct: 136 RLD--VRLEAVDASCVVPFRLAGKDFPTAHAYRRHLQRTLPTWLDRLPAEDPLARAPPPW 193

Query: 183 RLTGPVT-----PSNIPRFFDYPFQ---------AIDPMFPIGEQNALHILRKFCKEKVY 228
             + PV      P+      D P            + P    G   A   L  F +E + 
Sbjct: 194 GASVPVEIRRRWPAARGAELDRPAALAAGLPIDHGVPPAGRGGSVAARRRLAAFLREGLD 253

Query: 229 YYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEE--------------FVDLLIK 273
            Y E+R+ P    G+S LSP+L  G +S  +    +                        
Sbjct: 254 GYAERRNAPDEPRGSSGLSPWLHFGHVSSFEVLRAVLRREGWTPPAVATPPRGARAGWWA 313

Query: 274 PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------LLQAW 326
               A ++L++L+ WRE      A  P          W         +          A 
Sbjct: 314 LSPSAEAFLDQLLTWRELAFVTCAHVPEHRAYASLPAWARATLARHAADPRPAVYARAAL 373

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDG 383
           +   T  P+ +AA RQL   G +H  LRM+    +++                    LDG
Sbjct: 374 EAAETHDPLWNAAQRQLLREGVVHGYLRMLWGKKILEWSATPEEAHATLLELNDRHALDG 433

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
              ++  G  W     +      R   P     R+       R W
Sbjct: 434 RDPNSVAGIAWCLGRYDRPWGPER---PVFGTVRYMSSANTARKW 475


>gi|164455176|dbj|BAF97091.1| CPD photolyase [Oryza meridionalis]
          Length = 506

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 75/452 (16%), Positives = 149/452 (32%), Gaps = 46/452 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH--FIYASLLQV 68
           + W+  D R+ DN AL  A   + A    + +A     R   +SAR+    F+   L ++
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRL 100

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRL 127
               + + + F        +     + +   +   + L  +           D ++    
Sbjct: 101 AADATARHLPFFLLTGGPAE-----IPALVRRLGASTLVADFSPLRPVREALDAVVGDLR 155

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V     D   ++P       + +M      FR  + + + +  +    +PA+   
Sbjct: 156 REAPGVAVHQVDAHNVVPVW---TASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPW 212

Query: 186 GPVTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQR 234
               P        I R         +  +   GE+ A+  L      +  +++  Y   R
Sbjct: 213 DREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAMEALLGSKHGYLTKRIKSYETDR 272

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + P      S LSPYL  G +S ++C    K+      + PKS        ++ RE   +
Sbjct: 273 NDPTKPRALSGLSPYLHFGHISAQRCALEAKKR---RHLSPKSIDAFLEELVVRRELADN 329

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSH------LLQAWKQGYTGFPIIDAAMRQLNTIG 347
              + P          W  K   +  +         +  +   T  P+ +A+  ++   G
Sbjct: 330 FCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREHLENAKTHDPLWNASQLEMVHHG 389

Query: 348 WMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-- 402
            MH  +RM  A  +++             Y      +DG   S   G  W+    +D   
Sbjct: 390 KMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGFVGCMWSICGLHDQGW 449

Query: 403 -----VPYFRIFNPTIQGKRFDPQG--TFIRH 427
                    R  N     ++FD     ++++ 
Sbjct: 450 KERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481


>gi|156392837|ref|XP_001636254.1| predicted protein [Nematostella vectensis]
 gi|156223355|gb|EDO44191.1| predicted protein [Nematostella vectensis]
          Length = 382

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 115/361 (31%), Gaps = 18/361 (4%)

Query: 87  FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146
             D  + L  +     +  +  +        +    + K +   V     D   ++P   
Sbjct: 23  LGDPGKVLPEFVKSAGIGGIVVDFCPLRLPTQWVNDVVKAVPKDVPVCQVDAHNIVPCWH 82

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI--RLTGPVTPSNIPRFFDYPFQAI 204
                    +   P    ++   +      +    +    T       +  F +      
Sbjct: 83  ASPKLEYGARTIRPKIHKVLTEFLTEFPPVIKHSHVSGEKTKTTDWDAVDTFIEVDRSVG 142

Query: 205 DPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           +  +   G    L +L  FCK+++ Y+   R+ P  +  S LSP+   G +SP++   R+
Sbjct: 143 EVDWAKPGTAEGLFMLESFCKDRLKYFHSSRNDPTKRALSNLSPWFHTGQISPQRAILRV 202

Query: 264 KEEFVDLLIKPKSGAFS-WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           ++         +S      +   +   F  +    Y S+     +   T           
Sbjct: 203 RDFRSKFRESVESFIEECIIRRELSDNFCYYNNEKYDSIEGTNEWARKTLNDHAKDKREY 262

Query: 323 LQAW---KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE--YF- 376
           L A    ++  T   + +AA RQL   G +H  LRM  A  +++          +  YF 
Sbjct: 263 LYARGKLEKAQTHDDLWNAAQRQLVREGKLHGFLRMYWAKKILEWTDSPETALSDAIYFN 322

Query: 377 MSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQGKRFDPQGTFIRHWL 429
               LDG   +   G  W+    +D            R  N     ++F     F++ + 
Sbjct: 323 DKYALDGIDPNGYVGCMWSVCGIHDQGWAERPVFGKIRYMNYKGCQRKF-AVAEFVKRYK 381

Query: 430 P 430
           P
Sbjct: 382 P 382


>gi|82548258|gb|ABB82949.1| putative DNA deoxyribodipyrimidine photolyase [uncultured organism
           HF70_19B12]
          Length = 738

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 130/430 (30%), Gaps = 35/430 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            +  A S  + W+R  LR+ +N     A   +    + + I      R    S R   F+
Sbjct: 19  PSCDAPSFVIHWMRAALRLDENPTFDVARTIAKNLSLPLLIYQGIDERYPYASYRHHRFL 78

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN-----E 116
                 V    +Q G+ +  H   +          Y  Q+    +               
Sbjct: 79  IEGAADVAHRANQIGVKYLLHVSRDGHREPNL--QYIAQEAAVVVTDLVDLSPWSNWTES 136

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK--VYTPFRKALIQNLVQADL 174
           V R + + +   H V+ +         P    +   +  K  +  P+     +     D 
Sbjct: 137 VARIRPVIEVDAHCVLPRPVFGRTFDRPFRFRDATKREMKRRMAQPWPSTNHEITSFPDT 196

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFD----YPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
            + P   +  +  +               P          G   A+     F  E +  Y
Sbjct: 197 WTPPFTPVDASLELRKDGAQSLLAACQIDPTVVPVTDMIGGASVAMTRWNNFLSEGLSRY 256

Query: 231 VEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
              R+  A + G S +SP+L  G++              D    P  GA  +L+E++   
Sbjct: 257 HRTRNNAAKRGGVSGMSPWLHHGMI-------AATRLVRDAANSPTKGAQKFLDEMLVFR 309

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNK-----DSHLLQAWKQGYTGFPIIDAAMRQLN 344
            + +  A      +    +P   +  W          L    ++G T  P+ +AA   + 
Sbjct: 310 EHAYHHAHEVDNPLEWRHLPGWARESWQNTCLVKYPLLWMDLERGNTDDPLWNAAQTGIV 369

Query: 345 TIGWMHNRLRMITAS---FLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
             G MHN +RM         V D        +E      LDG   ++  G  W       
Sbjct: 370 RHGVMHNNVRMTWGKGTVRWVDDPEEAMSFTQELNDRYALDGRNPNSIAGVMWCYGLF-- 427

Query: 402 SVPYFRIFNP 411
                R F+P
Sbjct: 428 ----DRPFDP 433


>gi|226359412|gb|ACO51512.1| photolyase [Strongylocentrotus franciscanus]
          Length = 367

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 110/373 (29%), Gaps = 17/373 (4%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88
           A    +  +   F   P          R  +F+   L +V + L    I F         
Sbjct: 2   ALKQ-EVPLHVCFCLVPRFLEGT---IRHFNFVLEGLKEVSQELHLLDIPFHLL----IG 53

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            + + L  +     +  +  +        +  K +++ L   +     D   ++P     
Sbjct: 54  YAKDVLPGFINDHGLGGVVTDFSPLRTSRQWIKDVKEELPKNIPFCQVDAHNVVPCWEAS 113

Query: 149 NHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
           N      +   P     +   +     +   P  A     P+         +        
Sbjct: 114 NKLEYGARTIRPKITKQLTTYLTEFPPVICHPHKAKAKAEPIDWEGAYASLEVDQTVKPV 173

Query: 207 MF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
            +   G    + +L  F KE++ Y+   R+ P     S LSP++  G LS ++    ++ 
Sbjct: 174 DWAQPGTSEGMKMLDSFVKERLRYFSSARNDPTKSVCSNLSPWIHFGQLSSQRAALIVRL 233

Query: 266 EFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
                           +      + +      Y S+     +   T K         + +
Sbjct: 234 YRSRFSESVAGYIEESITRRELSDNFCFYNDNYDSIEGTNDWAKKTLKDHAKDKREYVYS 293

Query: 326 W---KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE---EYFMSQ 379
               ++  T   + ++A +Q+   G MH  LRM  A  +++         E         
Sbjct: 294 RETLERAKTHDQLWNSAQKQMVREGKMHGFLRMYWAKKILEWTTSPEEALEIAIYLNDRY 353

Query: 380 LLDGDLASNNGGW 392
            LDG   +   G 
Sbjct: 354 SLDGRDPNGYVGC 366


>gi|197123524|ref|YP_002135475.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. K]
 gi|196173373|gb|ACG74346.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. K]
          Length = 486

 Score =  103 bits (256), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 140/465 (30%), Gaps = 54/465 (11%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           +V L W+ +  R   N AL  A          V +  P +      S R   F+   +  
Sbjct: 21  AVVLHWMTSARRTRSNPALERAAELGRELGRPVLVLEPLRCGYPHASDRLHTFLLEGMRD 80

Query: 68  VQKSLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
              +L+ + +   +   +    D  +E L +     R   +  +        +       
Sbjct: 81  NAAALAGRALYHPWVERRAGEGDGLLEALAA-----RACAVIADDFPTGFPAQAIHAAAA 135

Query: 126 RLQHRVICKSFDDSVLLP---PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           RL   V  ++ D S ++P    G     A    +       A +  L   D  +   P  
Sbjct: 136 RLD--VRLEAVDASCVVPFRLAGKDFPTAHAYRRHLQRTLPAWLDRLPAEDPLARAPPPW 193

Query: 183 RLTGPVT-----PSNIPRFFDYPFQ---------AIDPMFPIGEQNALHILRKFCKEKVY 228
             + PV      P+      D P            + P    G   A   L  F ++ + 
Sbjct: 194 GASVPVEIRRRWPAARGAELDRPAALAAGLPIDHGVPPAGRGGSVAARRRLAAFLRDGLD 253

Query: 229 YYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEE--------------FVDLLIK 273
            Y E+R+ P    G+S LSP+L  G +S  +    +                        
Sbjct: 254 GYSERRNAPDEPRGSSGLSPWLHFGHVSSFEVLRAVLRREGWTPPAVAAPPRGARAGWWA 313

Query: 274 PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------ 326
               A ++L++L+ WRE      A  P          W         +    A       
Sbjct: 314 LSPSAEAFLDQLLTWRELAFVTCAHVPDHRAYASLPAWARATLARHAADPRPASYGRAAL 373

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDG 383
           +   T  P+ +AA RQL   G +H  LRM+    +++                    LDG
Sbjct: 374 EAAETHDPLWNAAQRQLLREGVVHGYLRMLWGKKILEWSPTPEEAHATMLELNDRHALDG 433

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
              S+  G  W     +      R   P     R+       R W
Sbjct: 434 RDPSSVAGVAWCLGRYDRPWGPER---PVFGTVRYMSSANTARKW 475


>gi|167998494|ref|XP_001751953.1| AtCRY1/HY4-like cryptochrome blue light photoreceptor protein
           [Physcomitrella patens subsp. patens]
 gi|162697051|gb|EDQ83388.1| AtCRY1/HY4-like cryptochrome blue light photoreceptor protein
           [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 10/153 (6%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
            +  +VW R DLR+ DN AL AA       V+ VF+ +P +  Q         ++  SL 
Sbjct: 2   AACTIVWFRRDLRLEDNPALIAAARAG--TVVPVFVWSPAEDGQFHPGRVSRWWLKQSLT 59

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ-YEINEVRRD-KLLE 124
            ++ SL + G      +     D +  L         T++F N    E      D   + 
Sbjct: 60  HLELSLKKLGSPLILRRS---RDMLSVLLEIAEAPGATQVFSNHLSVEGYRFDPDGDYVR 116

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
           + +          +  +  P      AL+   V
Sbjct: 117 RWIPELA---RLPNEWVHHPWDAPPSALRAAGV 146



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 12/82 (14%)

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIVDHKKA 466
           ++G RFDP G ++R W+PEL  +P +++H P             +L  NYP PIV+   A
Sbjct: 103 VEGYRFDPDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEIGAA 162

Query: 467 CHH---TLNQYY---AAKKQSL 482
                 +L + +   AA K +L
Sbjct: 163 RERLQASLAEMWERDAAMKAAL 184


>gi|226495065|ref|NP_001144536.1| hypothetical protein LOC100277533 [Zea mays]
 gi|195643560|gb|ACG41248.1| hypothetical protein [Zea mays]
          Length = 131

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            +VW R DLRI DN AL AA       V+ +FI  P  + Q+        ++  SL  + 
Sbjct: 7   TVVWFRRDLRIQDNPALAAAAK--GGSVLPIFIWCPSDYGQYYPGRCSRWWLKQSLAHLG 64

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           KSL   G      +    D ++  L         T++ YNR Y 
Sbjct: 65  KSLELLGCPLVLIRAE--DSTLAALLECVRSISATRVVYNRLYG 106


>gi|255671641|gb|ACU26402.1| deoxyribodipyrimidine photolyase [uncultured bacterium
           HF186_25m_30B18]
          Length = 487

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 129/442 (29%), Gaps = 53/442 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+ +  R TDN  L  A ++++   + + +  P +      S R   F+   +    +
Sbjct: 26  LYWMVSARRTTDNFGLQHALYHAETLGVPLVVFEPLRVGYRWASERFHAFVLEGMRDNAE 85

Query: 71  SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           +     G+ +  +           L++   Q     +  +        R      KRL  
Sbjct: 86  AFDGVAGVTYLPYVEPEAGAGSGLLEALAAQ--ACMVVSDHFPCFFVPRMVDKAAKRLDV 143

Query: 130 RVICKSFDD--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--LPVPAIRLT 185
           +V     +    +   P            V+    + + +      L S  LP    R  
Sbjct: 144 QVDVVDSNGILPLFAAPREFTTAHSFRRHVHKNVLEHVAEMPEAEPLASAELPPAPARDA 203

Query: 186 GPVTPSNIPRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
             + P                   D+    +      G Q A   L  F   ++  Y E 
Sbjct: 204 LNIAPWAAYTGEGALNVTLSALPIDHSVTPVSTR--GGRQEAWRRLDAFLGRQLNAYGE- 260

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNE----- 284
           R+       + LSP+L  G +        L E        +  KP      W        
Sbjct: 261 RNQVERDIGTGLSPHLHFGHIGAHTILRELIERERWSPDQVAPKPTGSRAGWWGMSEGAE 320

Query: 285 ------LIWRE-FYRHLMAFYPSVCMGKPFIPW---------TEKIEWNKDSHLLQAWKQ 328
                 L WRE  Y      +      +   PW          ++     D   L     
Sbjct: 321 SFLDQVLTWRELGYTFCHVRWRDYDRFESLPPWALTTLEAHARDRRPVLYDFEALD---A 377

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDL 385
           G T   + +AA RQL   G +HN LRM+ A       +   V      E      LDG  
Sbjct: 378 GKTHDMLWNAAQRQLRREGMIHNYLRMLWAKKILEWTEHPRVALDTLIELNNRYALDGRD 437

Query: 386 ASNNGGWQWAASTGNDSVPYFR 407
            ++  G  W     + +    R
Sbjct: 438 PNSYSGIFWCLGRFDRAWGPER 459


>gi|227553400|ref|ZP_03983449.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis
           HH22]
 gi|227177451|gb|EEI58423.1| possible deoxyribodipyrimidine photolyase [Enterococcus faecalis
           HH22]
          Length = 178

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 1/161 (0%)

Query: 105 KLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
            +++N        +RD+   +  +   I   SF D+ L     I  +    Y+V+TP+  
Sbjct: 10  AIYFNEDTCGFGAKRDQQAMRFFEENNIQSFSFQDAYLHGSEEIKKNDGSKYQVFTPYYN 69

Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFC 223
              +   +  +          +  + P     + +   +     + +GE+ A   L  F 
Sbjct: 70  KWKEAPKETPIPVSYTAEKIFSACLFPEEEAAYREQIARIPLTHYSVGEETARRRLNTFI 129

Query: 224 KEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
            +K+  Y  +RD P    TS LS +L  G LS R  W  L 
Sbjct: 130 DQKLQSYENKRDFPYQDQTSHLSTFLRTGELSIRTIWQELA 170


>gi|68076095|ref|XP_679967.1| DNA photolyase FAD binding domain [Plasmodium berghei strain ANKA]
 gi|56500825|emb|CAH99772.1| FAD binding domain of DNA photolyase, putative [Plasmodium berghei]
          Length = 812

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 149/416 (35%), Gaps = 25/416 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAV-FIATPEQWRQHGISARQSHFIYASLL 66
           L+ L  D RI DN ++  A      +   ++A  +I      R+   + R  +     L 
Sbjct: 318 LLLLTRDFRIADNWSIIYAYDMAKKNKCNLLACTYIN-----RKEKFTERYINIKLKVLK 372

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +++   +  I F        D+ +E+L  + ++  V   F++ +Y   +   + L++  
Sbjct: 373 NLEEGFKKLNIPFYVIPIFMIDEFMEFLRIHEIKTVVCD-FHSLEY--QKKFVENLVQMS 429

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAIRLT 185
            + ++     D   ++P            +   P  +  L   L++          I+  
Sbjct: 430 NKKKIKVLQVDSHNIIPLWITSKMEESSIRTIKPKIQTHLSSFLIEYIKLERFDQTIKYP 489

Query: 186 GPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
            P    ++ +        ++   F   E+ A  IL  FCK K+  Y  +R+ P     + 
Sbjct: 490 EPFDIVSLYKKLTVNNSCSVLSNFVCTEKKAKEILENFCKNKLDKYSVKRNDPNYDTINL 549

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVC 302
           L PY+++G++S ++C   + +  +       S    + N+  LI +E   +   +  +  
Sbjct: 550 LIPYINLGIISSQRCILEVNKYALQFPSIHASSGKEYFNDDLLIKKELADNFCYYNKNYD 609

Query: 303 MGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                  W +      +++     +  + ++   T   I +    QL   G +H  LRM 
Sbjct: 610 NFNGAKDWAKESLKKHELDKRNHLYDYEDFRSARTHNDIWNCCQLQLVNEGTIHEFLRMY 669

Query: 357 TASFLVKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
            A  ++          +   +      +DG  A+            + S     IF
Sbjct: 670 WAKKILNWSENSRTALKCAIKLTNEFSIDGKTANAYVSIMSIMGVHDQSWNERSIF 725


>gi|330814061|ref|YP_004358300.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487156|gb|AEA81561.1| deoxyribodipyrimidine photolyase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 271

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 97/220 (44%), Gaps = 13/220 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           +W+R D RI DN ALY  C N   K+ A FI   ++++     + Q  +++ +L+  Q  
Sbjct: 7   LWVREDFRIDDNPALYNIC-NIQEKIEAFFIYDEKKFKNR---SAQRWWLHKTLVNFQNK 62

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HR 130
           L+  GI F+ +     D+ I ++      +++   +YN     +E   +  +EK L  + 
Sbjct: 63  LNNIGISFKVY----ADNEIVYIKKLIKNEKIDNFYYNAIARPDERLIENEIEKNLAIYD 118

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V  + F+ ++L  P S+       ++V+TP+ +   +  ++           + +     
Sbjct: 119 VNYEKFESNLLQDPFSVRKKDNTPFQVFTPYWRNAEEQYLKNKNFISKKITYKKSTIKED 178

Query: 191 SNIPRFFDYP----FQAIDPMFPIGEQNALHILRKFCKEK 226
           +        P    F+  +  +  GE  A  +L+ F K+K
Sbjct: 179 NTAVLNLILPKKEWFEKFEKFWTPGEDMAKTLLKDFIKKK 218


>gi|317416914|emb|CBI63255.1| deoxyribodipyrimidine photolyase 1 [Hyaloperonospora arabidopsidis]
          Length = 596

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 79/501 (15%), Positives = 148/501 (29%), Gaps = 96/501 (19%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIAT-----------PEQWRQHG------- 52
           L W++  +R   N AL  A   ++   + + +             P+    H        
Sbjct: 39  LYWMQTSVRTKHNYALEYAVAAANKLQLPLHVVYLFPDRSVLPPLPKSEDDHDDEWKAEA 98

Query: 53  ---------ISARQSHFIYASLLQVQKSLSQKGIVFQY--------HQCSNFDDSIEWLD 95
                    ++ R + F    L    + L+ +G+ F           Q     D +   +
Sbjct: 99  RQDASAHAFVTERHARFALEGLADAYERLASRGVSFDVFHHTHQKQQQGKTKGDGLARNE 158

Query: 96  SYCL-QQRVTKLFYNRQY-EINEVRRDKLLEK----------------RLQHRVICKSFD 137
              +  +R   +  +R Y        D L+                        I +  +
Sbjct: 159 LLEVCARRAALVVTDRPYLRPWRSALDTLVASIEDREGGDDGDETGHSSAAEFGIVQ-VE 217

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197
             V++P   + N      +   P     +   V +        + R  G    S + +  
Sbjct: 218 GEVVVPADVVTNKEEYAARTIRPKITKHLDRFVVSLESLTLEQSCRTDGKSLLSGLDKHE 277

Query: 198 ----------------------DYPFQAIDPMFPIGEQNALHILRKFCK-EKVYYYVEQR 234
                                 D   +++   F  GE  A    ++F   +K+  Y  QR
Sbjct: 278 QLKLLDVTSSKAVADTLELLDVDRNVKSVGWCFRGGETAASACAKRFLTPDKLANYATQR 337

Query: 235 DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRH 293
           + P++  +S LS YL  G +        L    +  + + K G  S+L ELI  RE   +
Sbjct: 338 NEPSLDASSDLSVYLRYGHI--CAVRIALAANKLKGVTRAKEGLASFLEELIVRRELSVN 395

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHL-------LQAWKQGYTGFPIIDAAMRQLNTI 346
           L+ +          +P   +    + +             +   TG    +AA R+L   
Sbjct: 396 LVVYNQDNYDSFRCLPNYAQTTLQEHADDKRDQLYSRDKLESFQTGDRFWNAAQRELVVS 455

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSV 403
           G MH  +RM     L++             +      LD    ++  G  W     +   
Sbjct: 456 GKMHGYMRMYWGKKLLEWTRSPEEGFHAALVLNNKYALDAPDTNSYAGVAWVFGKHDQGW 515

Query: 404 ------PYFRIFNPTIQGKRF 418
                    R  N     ++F
Sbjct: 516 RERPIFGKVRYMNEVGLKRKF 536


>gi|145346558|ref|XP_001417753.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577981|gb|ABO96046.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 467

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 146/442 (33%), Gaps = 50/442 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L+W ++  R   N+AL  A   ++   A ++ VF +T         + R   F+   L +
Sbjct: 42  LLWAQSAQRTRWNEALEYAVDRANDRRAPLVVVFCSTATYPEA---NERHVGFMLEGLCE 98

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ +L ++ I F+   C+  +       +    +R  ++  +  Y    +R  +     L
Sbjct: 99  MRATLGKRRIAFEAFACAPPE------AALAASERAIEVVTDSGY----LRLLRAWRDDL 148

Query: 128 QHRVIC--KSFDDSVLLPP-GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
             R  C     +   ++P  G     A      + P   A ++   +           RL
Sbjct: 149 ARRATCAVTEIETECVVPQLGQGARRAEPSAATFRPKVLARVREFTRNACAKTVDKYERL 208

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFP------IGEQNALHILRKFC-KEKVYYYVEQRDIP 237
                        D      DP  P       GE  A   L  F  K  +  Y   R+ P
Sbjct: 209 PLERGVDACLNVLDAYGLKRDPSCPRVSSHVGGESRAKAKLDVFLTKNMLSRYHHSRNDP 268

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--SGAFSWLNELI-WREFYRHL 294
            +   S LSP++  G +S  +   +          +    +    +L+ELI  RE   + 
Sbjct: 269 CLCLQSHLSPHIHYGQISVVEVARKALAFRDAHADEADICASVDVFLDELIVRRELAVNF 328

Query: 295 MAFYPSVCMGKPFIPWT---------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
               P          W          ++ EW      L+ ++ G T   + +A+ R+L +
Sbjct: 329 ALRNPKYDSYDGLPEWARETLERHRGDRREWTY---TLEEFEHGRTHDKLWNASQRELVS 385

Query: 346 IGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
            G  HN LRM                WRI         LDG    +  G  W     +  
Sbjct: 386 SGKQHNYLRMYWGKKILEWSSTPEEAWRIAMTLNNRYSLDGRNMVSLTGVGWCFGLHDRE 445

Query: 403 VP------YFRIFNPTIQGKRF 418
                     R F+ +   K+F
Sbjct: 446 FHEASITGTIRRFSESGMRKKF 467


>gi|255671724|gb|ACU26482.1| deoxyribodipyrimidine photolyase [uncultured bacterium
           HF186_25m_13D19]
          Length = 459

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 125/434 (28%), Gaps = 53/434 (12%)

Query: 19  RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQ-KGI 77
           R TDN  L  A ++++   + + +  P +      S R   F+   +    ++     G+
Sbjct: 6   RTTDNFGLQHALYHAETLGVPLVVFEPLRVGYRWASERFHAFVLEGMRDNAEAFDGVAGV 65

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137
            +  +           L++   Q     +  +        R      KRL  +V     +
Sbjct: 66  TYLPYVEPEAGAGSGLLEALAAQ--ACMVVSDHFPCFFVPRMVDKAAKRLDVQVDVVDSN 123

Query: 138 D--SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS--LPVPAIRLTGPVTPSNI 193
               +   P            V+    + L +      L S  LP    R    + P   
Sbjct: 124 GILPLFAAPREFTTAHSFRRHVHKNVLEHLAEMPEAEPLASAELPPAPARDALNIAPWAA 183

Query: 194 PRFF------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
                           D+    +      G Q A   L  F   ++  Y E R+      
Sbjct: 184 CTGEGALNVTLSALPIDHSVTPVSTR--GGRQEAWRRLDAFLGRQLNAYGE-RNQVERDI 240

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFV----DLLIKPKSGAFSWLNE-----------LI 286
            + LSP+L  G +        L E        +  KP      W              L 
Sbjct: 241 GTGLSPHLHFGHIGAHTILRELIERERWSPDQVAPKPTGSRAGWWGMSEGAESFLDQVLT 300

Query: 287 WRE-FYRHLMAFYPSVCMGKPFIPW---------TEKIEWNKDSHLLQAWKQGYTGFPII 336
           WRE  Y      +      +   PW          ++     D   L     G T   + 
Sbjct: 301 WRELGYTFCHVRWRDYDRFESLPPWALTTLEAHARDRRPVLYDFEALD---AGKTHDMLW 357

Query: 337 DAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQ 393
           +AA RQL   G +HN LRM+ A       +   V      E      LDG   ++  G  
Sbjct: 358 NAAQRQLRREGMIHNYLRMLWAKKILEWTEHPRVALDTLIELNNRYALDGRDPNSYSGIF 417

Query: 394 WAASTGNDSVPYFR 407
           W     + +    R
Sbjct: 418 WCLGRFDRAWGPER 431


>gi|224099353|ref|XP_002334490.1| predicted protein [Populus trichocarpa]
 gi|222872649|gb|EEF09780.1| predicted protein [Populus trichocarpa]
          Length = 230

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 10/106 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASL 65
           +VW RNDLR+ DN+ L +A +N    V+ V+   P  + +           +++F+  S+
Sbjct: 127 IVWFRNDLRVHDNECLNSA-NNDSMSVLPVYCFDPRDYGKSSSGFDKTGPYRANFLIESV 185

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
             ++K+L  +G                 L           ++ +R 
Sbjct: 186 SDLRKNLQARGSDLVVR----VGRPETVLVELAKAIGADAVYAHRD 227


>gi|308802307|ref|XP_003078467.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
 gi|116056919|emb|CAL53208.1| class II DNA photolyase (ISS) [Ostreococcus tauri]
          Length = 297

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 101/297 (34%), Gaps = 15/297 (5%)

Query: 12  VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
            W+  D R+ DN AL  AC  +  +   V IA     +  G  ARQ  F+   L +++  
Sbjct: 2   YWMSRDQRVDDNWALLRACDLARERGAPVVIAFNLLTKYLGAGARQFGFMLRGLRELEAK 61

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
                  F        D+    +D+   +     +  +     + VR  K L    + R 
Sbjct: 62  ARAAKATFAMTYG---DEPAAAIDALAKKIGAKTIVCDFSPLRDGVRWRKDLAVLSEKRG 118

Query: 132 I-CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
              +  D   ++P     +  L++       R A        +  ++P   +   GP   
Sbjct: 119 AHVEECDAHNVVPCWEASDK-LEVGARTLRGRLAKRYPEFLKEFPAIPDDLVEYDGPAID 177

Query: 191 SNIPRFFDYPFQAIDPMFP------IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +                 P       GE  A  +L  F   ++  Y ++ D    +  S 
Sbjct: 178 AVKWDDLLAEALKRGEAVPEVTWAIPGETAARAVLDDFVANRMKLYEKRNDPSKPRALSG 237

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL-IWREFYRHLMAFYPS 300
           LSP+L  G +S ++C    K+          +   S+  EL + RE   +   + P 
Sbjct: 238 LSPWLHFGQISAQRCALEAKKAVGKASP---AAYDSFFEELVVRRELADNFCYYCPG 291


>gi|227505176|ref|ZP_03935225.1| possible deoxyribodipyrimidine photolyase [Corynebacterium striatum
           ATCC 6940]
 gi|227198225|gb|EEI78273.1| possible deoxyribodipyrimidine photolyase [Corynebacterium striatum
           ATCC 6940]
          Length = 178

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 12/187 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             L W+R+DLR+ DN AL  A    +  VIA  +  P       + +  + +   SL ++
Sbjct: 2   TTLYWIRDDLRLHDNPALTWAASRGE--VIACVLDEPAYPGSRPLGSATAWWRERSLSRL 59

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
             +L+   +           D+   L ++    +V+ + +NR+Y ++ +      +  L 
Sbjct: 60  AANLASYNVPLYRLNG----DARSVLPAFAASHKVSAVCWNRRYHLSTIDA-TAKDTLLA 114

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             +   SF    L+ P ++     + +KVY+ F +A    L      +L VP +   G +
Sbjct: 115 QGLEAHSFAAHCLVEPHAV-----KPFKVYSAFARAARAVLQDTMQPALGVPDLHGPGAI 169

Query: 189 TPSNIPR 195
               +P 
Sbjct: 170 AWEELPS 176


>gi|83315336|ref|XP_730750.1| DNA photolyase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490568|gb|EAA22315.1| FAD binding domain of DNA photolyase, putative [Plasmodium yoelii
           yoelii]
          Length = 849

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 143/415 (34%), Gaps = 27/415 (6%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAV-FIATPEQWRQHGISARQSHFIYASLL 66
           L+ L  D RI DN ++  A      +   ++A  +I      R+   + R  +     L 
Sbjct: 354 LLLLTRDFRIADNWSIIYAYDMAKKNKCNLLACTYIN-----RKEKFTERYINIKLKVLK 408

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEK 125
            +++   +  I F        D+ +E+L        +  +  +       +   + L++ 
Sbjct: 409 NLEEEFKKLNIPFYVIPIFMIDEFMEFLRI----HEIKTVVCDFHSLGYQKQFVENLVQM 464

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRSLPVPAIRL 184
             + ++     D   ++P            +   P  +  L   L++          I+ 
Sbjct: 465 SNKKKIKILQVDSHNIIPLWITSKMEESSIRTIKPKIQTHLSSFLIEYIKLERFDQIIKY 524

Query: 185 TGPVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
             P    ++ +        ++   F   E+ A  IL  FCK K+  Y  +R+ P     +
Sbjct: 525 PEPFDIVSLYKKLTVNNSCSVLSNFVCTEKKAREILEDFCKNKLDKYSVKRNDPNYDTIN 584

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSV 301
            L PY+++G++S ++C   + +  +       S    + N+  LI +E   +   +  + 
Sbjct: 585 LLIPYINLGIISSQRCILEVNKYALQFPSIHASSGKEYFNDDLLIKKELADNFCFYNKNY 644

Query: 302 CMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                   W +      +++     +  + ++   T   I +    QL   G +H  LRM
Sbjct: 645 DNFNGAKDWAKESLKKHELDKRNHLYDYEDFRNARTHNDIWNCCQLQLINEGTIHEFLRM 704

Query: 356 ITASFLVKDLLVDW---RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
             A  ++          +   +      +DG  A+       +    +D     R
Sbjct: 705 YWAKKILNWSENSRTALKCAIKLTNEFSIDGKTANAYVSIMSSIMGVHDQSWNER 759


>gi|68304204|ref|YP_249672.1| DNA photolyase 1 [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|67973033|gb|AAY83999.1| DNA photolyase 1 [Chrysodeixis chalcites nucleopolyhedrovirus]
          Length = 512

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 133/415 (32%), Gaps = 37/415 (8%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A+  A      + + +  V+              RQ  F+   L++
Sbjct: 60  VYWMWRDCRVQDNWAMIYAQYLAFKTKSPLYIVYCLPKFYLNST---RRQYQFLIEGLIE 116

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE--K 125
           + +  ++  I F     S     I+W+     +  +  +     +   +++    +   +
Sbjct: 117 LSEECAELDITFVILDDSADVVLIDWV----RKHDICAVVC--DFNPLQLQIKSTVNILQ 170

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL-------VQADLRSLP 178
            L   V     D   ++P           Y  +     A ++NL       +Q   +S+ 
Sbjct: 171 NLPADVYFAQVDAHNVVPCWLTFIADRHDYDEFKSKIDAELENLLTPFSLVIQHPYKSVV 230

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +  SN+    +         +   G   A+  L  F +  +Y Y      P
Sbjct: 231 SIESSTNTSIDWSNLLSSRNVDHSVKRIKWTEAGYNAAILRLATFIQCYIYNYKNSIHNP 290

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI--------KPKSGAFSWLNELIWR- 288
                S LSP+   G +S ++    L+       +        K K+    ++   ++R 
Sbjct: 291 VSSKQSDLSPFFHFGFISAQRVIYHLRFCVTKKSVLQKTVFIRKLKNNIEKFIENCLYRR 350

Query: 289 ---EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
              + + +    Y +     P I           ++ L   +   T   I + A   L  
Sbjct: 351 EFADNFCYFNLNYITFNAASPQIKRYIAKHLRYYTYSLNELEYSQTHDNIWNKAQEDLRE 410

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEE--YF-MSQLLDGDLASNNGGWQWAAS 397
            G ++  +R+  A  +++             Y      +DG   S   G  +A S
Sbjct: 411 NGKIYPFIRVYWAKKILEWTSTPEEALNRAIYLNQKYAVDGCDPSGYVGCLYAMS 465


>gi|327342146|gb|AEA50860.1| cry1-2 [Populus tremula]
          Length = 104

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        V+AVF+  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVAVFVWAPEEEGHYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           L  +  SL   G      + +   DS+  L         T+LF+N  Y
Sbjct: 60  LAHLDSSLRSLGTSLVTKRST---DSVSTLLEVIKSTGATQLFFNHLY 104


>gi|93004444|gb|ABD93508.3| DNA photolyase protein [Petunia axillaris subsp. parodii]
          Length = 181

 Score = 98.2 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 11/181 (6%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQVQKSLSQKGIVFQY 81
           + A HN    V+ V+   P  + +           ++ F+  S+  ++K+L  +G     
Sbjct: 5   FNAAHNESKSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVTDLRKNLQARGSDLVV 64

Query: 82  HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSV 140
                       L           ++ +R+   +EV+ +  +E  ++   V  K F  S 
Sbjct: 65  R----IGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEDKIESVMKDEGVEVKFFWGST 120

Query: 141 LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPVTPSNIPRFFDY 199
           L     +     +M   Y  FR+ +    V+  + +L  +  +   G V    IP   D 
Sbjct: 121 LYHVDDLPFKLEEMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVETGEIPSLVDL 180

Query: 200 P 200
            
Sbjct: 181 G 181


>gi|74229751|ref|YP_308955.1| photolyase [Trichoplusia ni SNPV]
 gi|72259665|gb|AAZ67436.1| photolyase [Trichoplusia ni SNPV]
          Length = 502

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/419 (13%), Positives = 131/419 (31%), Gaps = 47/419 (11%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN AL  A      + + +  V+              RQ  F+   L+ 
Sbjct: 50  VYWMWRDCRVQDNWALIYAQYLAFKTKSPLYIVYCLPKTYLNAT---RRQYQFLIEGLIG 106

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE--K 125
           + +   +  I F      +  D +  L  + L+  +  +     Y   +++ + ++   +
Sbjct: 107 LSEECVELDITFVI--LDDRADVV--LIDWVLKHDICAVIT--DYNPLQLQMNVVVTVLQ 160

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-------LVQADLRSLP 178
            L   +     D   ++P  ++ +     Y  +       ++N       +++   +S+ 
Sbjct: 161 NLPAEIYFAQVDAHNVVPGWTLSDTGKFDYDQFKVKINEQLENYLTRFSLVIRHPYKSVV 220

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                    +  + +              +   G   A+  L  F +  +Y Y       
Sbjct: 221 AIESSTNTAIDWNQLLSSRSIDHSVKRINWTEAGYDAAILRLASFIQCSLYNYKNCIQDL 280

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDL--------LIKPKSGAFSWLNELIWRE 289
                S LSP+L  G +S ++    L+               +K +     ++   ++R 
Sbjct: 281 TSTNQSDLSPFLHFGFISAQRVIYHLRFCITKQSVLQKTISKVKLEKNINRFIENCLYRR 340

Query: 290 FYRHLMAFY---------PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +     +Y         PS                   ++ L+  +   T   + + A 
Sbjct: 341 EFADNFCYYNSNYNSFIAPSTQSKLYIKRHIRFF-----TYGLKELENSQTHDALWNRAQ 395

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE--YF-MSQLLDGDLASNNGGWQWAA 396
             L   G +H  +R+  A  +++             Y      +DG   S   G  +A 
Sbjct: 396 EDLRENGKIHPFIRVYWAKKILEWTPTPEEALNRAIYLNQRYAVDGCDPSGYVGCLYAM 454


>gi|301057335|ref|ZP_07198453.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2]
 gi|300448565|gb|EFK12212.1| FAD binding domain of DNA photolyase [delta proteobacterium NaphS2]
          Length = 499

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 151/476 (31%), Gaps = 56/476 (11%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
            +     L W+    R+  N +L  A   +      + I    +      S R   FI A
Sbjct: 19  NSRGHFALYWMTACRRVHWNYSLDRAVEWALKLNKPLVILEALRTGYPWASDRFHGFIMA 78

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
            +   + +L  + +   Y+     D++ +      L  +   +  +           +  
Sbjct: 79  GMRDNRAALKDRNV--LYYPYVAPDENADKGLLEALALKAAIVVTDDFPAFFLPNMIRSA 136

Query: 124 EKRLQHRVICKSFDDSVLLPPGSI-------------LNHALQMYKVYTPFRKALIQNLV 170
            + L   V  +  D + +LP                 L   L  +    P   AL    +
Sbjct: 137 AETL--TVRLEQVDGNGILPIADTDRIFTTAYSFRRFLQKNLIPHLCAPPKASALKGRSL 194

Query: 171 QADLRSL--PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNA---LHILRKFCK 224
           +   RSL   +       P+   N       P+     + P  GE  A   L +L++F  
Sbjct: 195 KNPSRSLVEEIQKKWPPAPLNDLNATPLNLNPYPIDHIIPPVPGEGGAVRGLRMLKRFIM 254

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK--------- 275
             + +Y + R+ P    TS LSPYL  G +SP Q ++ +         K           
Sbjct: 255 SGLPHYADGRNQPDQPVTSGLSPYLHFGHVSPHQVFHEIARNQGWQRQKSAEKKVDGRRA 314

Query: 276 ------SGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------L 322
                   A ++L++LI WRE   ++               W        +         
Sbjct: 315 GWWGMDENAEAFLDQLITWRELGFNMCRHDEKYDRYASLPQWVRDTLEAHEKDKRPYVYA 374

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE---EYFMSQ 379
           L+ ++   T   + +AA  QL   G +HN LRM+    ++          +         
Sbjct: 375 LEDFENAQTHDSLWNAAQNQLVREGRIHNYLRMLWGKKILHWSASPREALDIMIRLNNRY 434

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRI-------FNPTIQGKRFDPQGTFIRHW 428
            LDG   ++  G  W     + +    R         +     ++    G +++ +
Sbjct: 435 ALDGRDPNSYSGIFWVLGRYDRAWGPERPVFGKVRYMSSKNTARKIR-TGEYVKKY 489


>gi|170595219|ref|XP_001902292.1| FAD binding domain of DNA photolyase family protein [Brugia malayi]
 gi|158590106|gb|EDP28860.1| FAD binding domain of DNA photolyase family protein [Brugia malayi]
          Length = 442

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 116/371 (31%), Gaps = 35/371 (9%)

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI 132
           ++ G+           + I  L     +  +   +       +E   DKL+ K  +    
Sbjct: 43  NEHGVPILASGNEEATEIILKLSDVACEVIIDAAYLREDRNFDENLNDKLVMKCRR---- 98

Query: 133 CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192
               + +V +P  ++ N                + + +       P         +   N
Sbjct: 99  FTKVEGNVTIPVATLCNKPAYNANTIRKVAWHFLDDFLLEKWNVTPKIYCESWESIVEYN 158

Query: 193 IPRFFDYPFQ--------AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQ 244
           +    D   +            +   GE  AL +L  F    +  Y E+R+IP     S 
Sbjct: 159 L-ECMDISSECTRAYNDCRTSSVLKGGEDAALQVLDYFIVNNLNTYDEERNIPNSGKQSL 217

Query: 245 LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPS---- 300
           LSPY+  G+L+P     ++K+        PKS   ++L EL+ R    H    Y      
Sbjct: 218 LSPYIHFGMLNPIMIVVKVKQ-----SEAPKSAKDAFLEELVVRRELAHNFVXYXRDTYD 272

Query: 301 --VCMGKPFIPWTEKIEWNKDSHLLQAW--KQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
              C+ +      ++   +K  ++      ++G T     +AA  +L     M   LRM 
Sbjct: 273 TFDCLPEWAKKAMDEHRHDKREYIYSYKELEEGCTHDVYWNAAQFELVFTHKMSGYLRMY 332

Query: 357 TASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSV------PYFR 407
            A        D    +    E      LDG   +   G  W     + +          R
Sbjct: 333 WAKKVIEWSHDYEFAYAFLIEQNDKYELDGRDPNGYCGVMWNFGMHDRAHANRPVFGKIR 392

Query: 408 IFNPTIQGKRF 418
                   ++F
Sbjct: 393 YMCADGLRRKF 403


>gi|254479942|ref|ZP_05093190.1| deoxyribodipyrimidine photolyase superfamily protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039504|gb|EEB80163.1| deoxyribodipyrimidine photolyase superfamily protein [marine gamma
           proteobacterium HTCC2148]
          Length = 204

 Score = 97.0 bits (240), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 11/190 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIA--TPEQWRQHGISARQSHFIYASLLQV 68
           + W R+DLRI DN AL    H    +++ VF            G+  ++  F+  SL  +
Sbjct: 7   IYWFRSDLRINDNPALQ--LHCGVDRLLCVFFWPRDIPWCNLKGLGRQRERFLIESLEAL 64

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +  L++ G      +    +   + L S   + +VT++   R     E   +K +  R+ 
Sbjct: 65  RAQLAELGQKLLVFR----ETPAQVLPSLVDEYKVTRIGVARSPGSYERLDEKAVAARVS 120

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V     + + L    ++ +  L + K +TPFR+++             +P     G +
Sbjct: 121 --VPLVVHEGNTLFSEKALQSTKLSL-KQFTPFRRSVEPLQASNPAGVAVMPPAPPRGVM 177

Query: 189 TPSNIPRFFD 198
                   FD
Sbjct: 178 PCHCPLPGFD 187


>gi|284431213|gb|ADB84373.1| DNA photolyase 2 [Apocheima cinerarium nucleopolyhedrovirus]
          Length = 395

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 129/396 (32%), Gaps = 39/396 (9%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
           F    L  + K   Q  I F     S  +  ++W+  Y     +  +  +        R 
Sbjct: 9   FWIEGLKLIHKECKQLNITFVVLNGSGDETLVDWVKKY----NIAGIVCDFNPLRIVRRW 64

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPG-----------SILNHALQMYKVYTPFRKALIQN 168
              ++ +L   V     D   ++P             ++ N      K +      ++++
Sbjct: 65  TARVKTQLPSDVYFAQIDAHNIVPCWVASQKQEINARTMRNKLKTNMKSFLKPFPLVMKH 124

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
            + +  R  P     +       +  R  D   + +      G  NA   L KF  + ++
Sbjct: 125 SIDSKARIDPATCDEIDWKKLLES--RDADKNIEPV-TWAQAGYNNACVALAKFIDDNLW 181

Query: 229 YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIW 287
           +Y E R+ P     S +SP+   G +S ++    L    V  +   +S   +++ E  + 
Sbjct: 182 HYKETRNDPNADSQSNMSPWYHFGQISVQRVVWYL---IVAKMQHFESNVETYIEECFVR 238

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGYTGFPIIDAAMR 341
           RE   +   +  +    +    W ++       E  +  +  +  +   T   + +AA  
Sbjct: 239 RELADNFCYYNINYDRFEGAPDWAKETLSLHANEGREYCYNRRELENSETHDILWNAAQT 298

Query: 342 QLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAAST 398
           QL T G MH  +R+  A           V       +     LDG   +   G  W+   
Sbjct: 299 QLKTQGKMHGYMRIYWAKKILEWSISPTVALINAIYFNDKYSLDGRDPNGYAGCMWSICG 358

Query: 399 GNDSV-------PYFRIFNPTIQGKRFDPQGTFIRH 427
            +D            R  N     ++F+    +I  
Sbjct: 359 THDRAWMERPIYGKIRHMNFEGCKRKFNIDC-YINK 393


>gi|258611843|ref|ZP_05711678.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           R2-503]
 gi|258606567|gb|EEW19175.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
           R2-503]
          Length = 164

 Score = 96.6 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 12/152 (7%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQV 68
             ++W R DLR+ DNKALY AC   D  ++ +F   P Q+      +      +AS+   
Sbjct: 2   TSVMWFRRDLRVNDNKALYHACKEDD--LLLLFQVNPAQFIT---GSPSHQGFFASVAHF 56

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ-RVTKLFYNRQYEINEVRRDKLLEKRL 127
           ++ + +       H    F + IE             K+++NR       +RD+  +   
Sbjct: 57  KQEIDK-----TAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAKRDEAAQAFF 111

Query: 128 -QHRVICKSFDDSVLLPPGSILNHALQMYKVY 158
            + ++  ++F DS L     +     + YK++
Sbjct: 112 DEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIF 143


>gi|296419444|ref|XP_002839318.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635446|emb|CAZ83509.1| unnamed protein product [Tuber melanosporum]
          Length = 265

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 48/201 (23%)

Query: 269 DLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
             L +      +W++E+  ++F+++++  +P VC  K              S     +  
Sbjct: 107 KRLGRRSKRIQTWISEIAQKDFHKNVLVNWPFVCTNKTSKLPHSPTPQYSTSLAESYFYA 166

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G+TG PIIDAA+RQL    ++ NR R +                                
Sbjct: 167 GHTGDPIIDAAIRQLQKTKYIRNRARTVCV------------------------------ 196

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD 448
                    TG D  PYFR+FNP     +F P    IR W+ +L  V     HAP   LD
Sbjct: 197 --------GTGVDPQPYFRLFNPVK-SLQFYPHSEHIRTWVGKLKEV-----HAPPKVLD 242

Query: 449 KNDLSLNYPLPIVDHKKACHH 469
           +         P+VDH+ +   
Sbjct: 243 EEGAK----KPLVDHEVSQEE 259


>gi|92429544|gb|ABD93516.2| DNA photolyase protein [Solanum habrochaites]
 gi|92429552|gb|ABD93520.2| DNA photolyase protein [Solanum pennellii]
          Length = 174

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 11/178 (6%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
           A HN    V+AV+   P  + +           ++ F+  S+  ++K+L  +G       
Sbjct: 1   AAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVR- 59

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLL 142
                     L           ++ +R+   +EV+ +  ++  ++   +  K F  S L 
Sbjct: 60  ---IGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLY 116

Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPVTPSNIPRFFDY 199
               +     QM   Y  FR+ +    V+  + +L  +  +   G V P  IP   D 
Sbjct: 117 HVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVDL 174


>gi|108759895|ref|YP_632311.1| deoxyribodipyrimidine photolyase [Myxococcus xanthus DK 1622]
 gi|108463775|gb|ABF88960.1| deoxyribodipyrimidine photolyase [Myxococcus xanthus DK 1622]
          Length = 488

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 127/424 (29%), Gaps = 38/424 (8%)

Query: 15  RNDL---------RITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           R D          R   N AL AA    +   + V +    +      S R   +    +
Sbjct: 29  RRDFVLYWCMVNHRAEQNHALDAAIGLGNHLGLPVVVYQAIRPDYPHASDRLHAWALEGM 88

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
           + +    + +G+ +         +    L       R   +  +           +   K
Sbjct: 89  MDMATGCAARGLPYWLELPRTSKEHRPRLAQLGR--RAAAIVSDLFPTYIIPGHLRGAAK 146

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-------- 177
            L   V   + D S ++P   I    +  Y +    +K   + L +A             
Sbjct: 147 ALD--VPLFAVDASCVVPMQRIATRQIGAYTLRPKLKKLWPEYLDRAVPNRAVKAAAAGR 204

Query: 178 -PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
              P    +           FD+           G +  L  L+ F  +++  Y E R+ 
Sbjct: 205 KLEPDFATSDARESRESLDAFDFDHSVAPIQERGGRKAGLDALQAFVHQRLEGYDEGRND 264

Query: 237 PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA 296
           P +   S LSP+   G L             +       +    +L EL+ R        
Sbjct: 265 PGLARQSNLSPFFHWGNL----FAGEAARAAIRARGAQDASVQGFLEELLVRRELGFNYC 320

Query: 297 FY---PSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           F+   P         PW +      + +  +  + L+  +   T   + +AA R+L   G
Sbjct: 321 FHTPGPQQLSVASLPPWAKETLTRHQKDAREHRYSLKQLETARTADGLWNAAQRELVERG 380

Query: 348 WMHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
            +HN LRM+    +++         +          +DG   ++   + W     +    
Sbjct: 381 RIHNYLRMLWGKKILEWTPSPQEALQRIAFLNDKYAVDGRDPASVANFMWVLGLHDRPFQ 440

Query: 405 YFRI 408
             ++
Sbjct: 441 ERQV 444


>gi|222612495|gb|EEE50627.1| hypothetical protein OsJ_30831 [Oryza sativa Japonica Group]
          Length = 516

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/459 (16%), Positives = 153/459 (33%), Gaps = 50/459 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH--FIYASLLQV 68
           + W+  D R+ DN AL  A   + A    + +A     R   +SAR+    F+   L ++
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRL 100

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRL 127
               + + + F       F      + +   +   + L  +           D ++    
Sbjct: 101 AADAAARHLPFFL-----FTGGPAEIPALVRRLGASTLVADFSPLRPVREALDAVVGDLR 155

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V     D   ++P       + +M      FR  + + + +  +    +PA+   
Sbjct: 156 REAPGVAVHQVDAHNVVPVW---TASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPW 212

Query: 186 GPVTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQR 234
               P        I R         +  +   GE+ A+  L      F  +++  Y   R
Sbjct: 213 DREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETDR 272

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKE------EFVDLLIKPKSGAFSWLNEL-I 286
           + P      S LSPYL  G +S ++C    K+      +  ++    K    ++L EL +
Sbjct: 273 NDPTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLSPKMFEVTCVLKQSVDAFLEELVV 332

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAM 340
            RE   +   + P          W  K   +  +   +        +   T  P+ +A+ 
Sbjct: 333 RRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQ 392

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAAS 397
            ++   G MH  +RM  A  +++             Y      +DG   S   G  W+  
Sbjct: 393 LEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSIC 452

Query: 398 TGNDS-------VPYFRIFNPTIQGKRFDPQG--TFIRH 427
             +D            R  N     ++FD     ++++ 
Sbjct: 453 GLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 491


>gi|75122626|sp|Q6F6A2|PHR_ORYSJ RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
           photolyase; AltName: Full=OsCPDII; AltName:
           Full=Photoreactivating enzyme
 gi|49532671|dbj|BAD26607.1| CPD photolyase [Oryza sativa Japonica Group]
 gi|70067250|dbj|BAE06248.1| CPD photolyase [Oryza sativa Japonica Group]
 gi|78707888|gb|ABB46863.1| Deoxyribodipyrimidine photo-lyase, putative, expressed [Oryza
           sativa Japonica Group]
 gi|164455166|dbj|BAF97086.1| CPD photolyase [Oryza sativa]
          Length = 506

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 149/452 (32%), Gaps = 46/452 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH--FIYASLLQV 68
           + W+  D R+ DN AL  A   + A    + +A     R   +SAR+    F+   L ++
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRL 100

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRL 127
               + + + F       F      + +   +   + L  +           D ++    
Sbjct: 101 AADAAARHLPFFL-----FTGGPAEIPALVRRLGASTLVADFSPLRPVREALDAVVGDLR 155

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V     D   ++P       + +M      FR  + + + +  +    +PA+   
Sbjct: 156 REAPGVAVHQVDAHNVVPVW---TASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPW 212

Query: 186 GPVTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQR 234
               P        I R         +  +   GE+ A+  L      F  +++  Y   R
Sbjct: 213 DREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETDR 272

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + P      S LSPYL  G +S ++C    K+      + PKS        ++ RE   +
Sbjct: 273 NDPTKPRALSGLSPYLHFGHISAQRCALEAKKC---RHLSPKSVDAFLEELVVRRELADN 329

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIG 347
              + P          W  K   +  +   +        +   T  P+ +A+  ++   G
Sbjct: 330 FCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHG 389

Query: 348 WMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-- 402
            MH  +RM  A  +++             Y      +DG   S   G  W+    +D   
Sbjct: 390 KMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGW 449

Query: 403 -----VPYFRIFNPTIQGKRFDPQG--TFIRH 427
                    R  N     ++FD     ++++ 
Sbjct: 450 KERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481


>gi|312261184|dbj|BAC76449.2| CPD-photolyase [Oryza sativa Japonica Group]
          Length = 506

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 149/452 (32%), Gaps = 46/452 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH--FIYASLLQV 68
           + W+  D R+ DN AL  A   + A    + +A     R   +SAR+    F+   L ++
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRL 100

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRL 127
               + + + F       F      + +   +   + L  +           D ++    
Sbjct: 101 AADAAARHLPFFL-----FTGGPAEIPALVQRLGASTLVADFSPLRPVREALDAVVGDLR 155

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V     D   ++P       + +M      FR  + + + +  +    +PA+   
Sbjct: 156 REAPGVAVHQVDAHNVVPVW---TASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPW 212

Query: 186 GPVTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQR 234
               P        I R         +  +   GE+ A+  L      F  +++  Y   R
Sbjct: 213 DREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETDR 272

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + P      S LSPYL  G +S ++C    K+      + PKS        ++ RE   +
Sbjct: 273 NDPTKPRALSGLSPYLHFGHISAQRCALEAKKC---RHLSPKSVDAFLEELVVRRELADN 329

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIG 347
              + P          W  K   +  +   +        +   T  P+ +A+  ++   G
Sbjct: 330 FCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHG 389

Query: 348 WMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-- 402
            MH  +RM  A  +++             Y      +DG   S   G  W+    +D   
Sbjct: 390 KMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGW 449

Query: 403 -----VPYFRIFNPTIQGKRFDPQG--TFIRH 427
                    R  N     ++FD     ++++ 
Sbjct: 450 KERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481


>gi|164455158|dbj|BAF97082.1| CPD photolyase [Oryza rufipogon]
          Length = 506

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 148/452 (32%), Gaps = 46/452 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH--FIYASLLQV 68
           + W+  D R+ DN AL  A   + A    + +A     R   +SAR+    F+   L ++
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRL 100

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRL 127
               + + + F       F      + +   +   + L  +           D ++    
Sbjct: 101 AADAAARHLPFFL-----FTGGPAEIPALVRRLGASTLVADFSPLRPVREALDAVVGDLR 155

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V     D   ++P       + +M      FR  + + + +  +    +PA+   
Sbjct: 156 REAPGVAVHQVDAHNVVPVW---TASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPW 212

Query: 186 GPVTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQR 234
               P        I R         +  +   GE+ A+  L      F  +++  Y   R
Sbjct: 213 DREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETDR 272

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + P      S LSPYL  G +S  +C    K+      + PKS        ++ RE   +
Sbjct: 273 NDPTKPRALSGLSPYLHFGHISAHRCALEAKKC---RHLSPKSVDAFLEELVVRRELADN 329

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIG 347
              + P          W  K   +  +   +        +   T  P+ +A+  ++   G
Sbjct: 330 FCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHG 389

Query: 348 WMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-- 402
            MH  +RM  A  +++             Y      +DG   S   G  W+    +D   
Sbjct: 390 KMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGW 449

Query: 403 -----VPYFRIFNPTIQGKRFDPQG--TFIRH 427
                    R  N     ++FD     ++++ 
Sbjct: 450 KERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481


>gi|53147493|dbj|BAD52107.1| CPD photolyase [Oryza sativa Indica Group]
 gi|70067245|dbj|BAE06247.1| CPD photolyase [Oryza sativa Indica Group]
 gi|164455150|dbj|BAF97078.1| CPD photolyase [Oryza rufipogon]
 gi|164455152|dbj|BAF97079.1| CPD photolyase [Oryza rufipogon]
 gi|164455154|dbj|BAF97080.1| CPD photolyase [Oryza rufipogon]
 gi|164455156|dbj|BAF97081.1| CPD photolyase [Oryza rufipogon]
 gi|164455162|dbj|BAF97084.1| CPD photolyase [Oryza sativa Indica Group]
 gi|164455164|dbj|BAF97085.1| CPD photolyase [Oryza sativa Indica Group]
 gi|164455168|dbj|BAF97087.1| CPD photolyase [Oryza sativa]
 gi|164455182|dbj|BAF97094.1| CPD photolyase [Oryza rufipogon]
          Length = 506

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 148/452 (32%), Gaps = 46/452 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH--FIYASLLQV 68
           + W+  D R+ DN AL  A   + A    + +A     R   +SAR+    F+   L ++
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRL 100

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRL 127
               + + + F       F      + +   +   + L  +           D ++    
Sbjct: 101 AADAAARHLPFFL-----FTGGPAEIPALVRRLGASTLVADFSPLRPVREALDAVVGDLR 155

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V     D   ++P       + +M      FR  + + + +  +    +PA+   
Sbjct: 156 REAPGVAVHQVDAHNVVPVW---TASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPW 212

Query: 186 GPVTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQR 234
               P        I R         +  +   GE+ A+  L      F  +++  Y   R
Sbjct: 213 DREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETDR 272

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + P      S LSPYL  G +S  +C    K+      + PKS        ++ RE   +
Sbjct: 273 NDPTKPRALSGLSPYLHFGHISAHRCALEAKKC---RHLSPKSVDAFLEELVVRRELADN 329

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIG 347
              + P          W  K   +  +   +        +   T  P+ +A+  ++   G
Sbjct: 330 FCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHG 389

Query: 348 WMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-- 402
            MH  +RM  A  +++             Y      +DG   S   G  W+    +D   
Sbjct: 390 KMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGW 449

Query: 403 -----VPYFRIFNPTIQGKRFDPQG--TFIRH 427
                    R  N     ++FD     ++++ 
Sbjct: 450 KERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481


>gi|86159449|ref|YP_466234.1| deoxyribodipyrimidine photo-lyase type II [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775960|gb|ABC82797.1| Deoxyribodipyrimidine photo-lyase type II [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 490

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/462 (17%), Positives = 133/462 (28%), Gaps = 54/462 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+ +  R   N AL  A     A    V +  P +      S R   F+   +     
Sbjct: 28  LHWMTSARRTRSNPALERAAELGRALGRPVLVLEPLRCGYPHASDRLHAFLLEGMRDNAA 87

Query: 71  SLSQKGI--VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           +L+ + +   +   +    D  ++ L +     R   +  +                RL 
Sbjct: 88  ALAGRALYHPWVERRAGEGDGLLDALAA-----RACAVIADDFPTGFPAAAIGAAAARLD 142

Query: 129 HRVICKSFDDSVLLP---PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             V  ++ D S ++P    G     A    +       A +  L   D  +   P    +
Sbjct: 143 --VRLEAVDASCVVPFRLAGKDFPTAHAYRRHLQRALPAWLDRLPAEDPLAGVPPPGGAS 200

Query: 186 GPVTPSNIPRFFDYPFQA--------------IDPMFPIGEQNALHILRKFCKEKVYYYV 231
            P               A              + P    G   A   L  F ++ +  Y 
Sbjct: 201 VPAEIRRRWPAARAAELARPAALAAALPIDHRVPPAGRGGSVAARRRLSAFLRDGLDAYA 260

Query: 232 EQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEE--------------FVDLLIKPKS 276
           E+R+ P    G S LSP+L  G L   +    +                          +
Sbjct: 261 ERRNAPDEARGASGLSPWLHFGHLGSFEILRAVLRREGWTPPPVAAPARGARAGWWGLSA 320

Query: 277 GAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH------LLQAWKQG 329
            A ++L++L+ WRE      A  P          W         +          A +  
Sbjct: 321 SAEAFLDQLLTWRELAFVTCAHVPEHRAYASLPAWARATLARHAADPRPAVYARAALEAA 380

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLA 386
            T  P+ +AA RQL   G +H  LRM+    +++                    LDG   
Sbjct: 381 ETHDPLWNAAQRQLLREGVVHGYLRMLWGKKILEWSATPEEAHATLLELNDRHALDGRDP 440

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           ++  G  W     +      R   P     R+       R W
Sbjct: 441 NSVAGIAWCLGRYDRPWGPER---PVFGTVRYMSSANTARKW 479


>gi|242812722|ref|XP_002486016.1| DNA photolyase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218714355|gb|EED13778.1| DNA photolyase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 356

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 358 ASFLVKD-LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGK 416
             FL +    V W  G E F   L+D + ASN G W W  S       Y+R ++P   G+
Sbjct: 250 VCFLTRGGCYVSWEQGVEVFQEWLIDHEEASNVGNWMW-LSCTAFFSQYYRCYSPIAFGR 308

Query: 417 RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKNDLSLNYP 457
           R+DP G F+R + PEL +   +YI+ P     K+  ++  P
Sbjct: 309 RWDPNGDFVRRYCPELKDYDKKYIYEPWRAPIKDQKNMGMP 349



 Score = 37.3 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 33/126 (26%), Gaps = 7/126 (5%)

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF-DDSVLLPPGSILNH-A 151
           L        +T L + +  +     RD+ + K +++        +   L  P  I+    
Sbjct: 63  LTKLWKAWGITHLVFEKDTDAYAKHRDEQIIKLVENAGTEILVSNGRPLFNPDYIVRKNN 122

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVP-----AIRLTGPVTPSNIPRFFDYPFQAIDP 206
            +         KA          + L  P               S      +Y +  +  
Sbjct: 123 GEPTLSINKLLKASENMDSDIPDKPLGTPESVPDPWEDAKMNLDSLEHNMPEYGYNLLLG 182

Query: 207 MFPIGE 212
               GE
Sbjct: 183 QLLFGE 188


>gi|92429554|gb|ABD93521.2| DNA photolyase protein [Solanum lycopersicoides]
          Length = 173

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 11/177 (6%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
           A HN    V+AV+   P  + +           ++ F+  S+  ++K+L  +G       
Sbjct: 1   AAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVR- 59

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLL 142
                     L           ++ +R+   +EV+ +  ++  ++   +  K F  S L 
Sbjct: 60  ---IGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLY 116

Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPVTPSNIPRFFD 198
               +     QM   Y  FR+ +    V+  + +L  +  +   G V P  IP   D
Sbjct: 117 HVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVD 173


>gi|27262422|gb|AAN87492.1| Deoxyribodipyrimidine photolyase [Heliobacillus mobilis]
          Length = 257

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 92/236 (38%), Gaps = 12/236 (5%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
            +  G   A  +L +F   K+ +Y E+R+ P+++  S LSPYL  G +SP     R++E 
Sbjct: 24  CWQGGASAAKGLLDRFIATKLEHYGERRNDPSLEYVSSLSPYLHFGQISPLYMALRVQES 83

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAF-YPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
            +   +           EL     + +L    + ++        +T +++  + ++ L  
Sbjct: 84  NIRASVDAYLEELIVRRELSINFVHYNLRYDEFTALPEWARQTLYTHRVDCREFNYGLSE 143

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLD 382
            + G T  P  +AA  +L   G +H  +RM     +++        ++I         LD
Sbjct: 144 LENGLTDDPFFNAAQTELRKRGIIHGYMRMYWGKKILEWSPSPEEAFQIALYLNDKYALD 203

Query: 383 GDLASNNGGWQWAASTGNDSV------PYFRIFNPTIQGKRFDPQGTFIRHWLPEL 432
           G   +   G  W     +            R  N     ++F+    +++  + EL
Sbjct: 204 GRDPNGYTGVAWCFGKHDRPWGERAIFGKVRYMNAAGLRRKFNAMA-YVQK-VEEL 257


>gi|327342140|gb|AEA50857.1| cry1-1 [Populus tremula]
          Length = 104

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW R DLR+ DN AL A        V+AVF+  PE+   +        ++  S
Sbjct: 2   SGGGCSIVWFRRDLRVEDNPALAAGVRAG--AVVAVFVWAPEEEGHYYPGRVSRWWLKQS 59

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           L  +  SL   G      + +   DS+  L         T+L +N  Y
Sbjct: 60  LGHLDSSLRSLGTSLVTKRST---DSVSTLLEVVKSTGATQLLFNHLY 104


>gi|124506191|ref|XP_001351693.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase), putative [Plasmodium falciparum 3D7]
 gi|23504621|emb|CAD51500.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase), putative [Plasmodium falciparum 3D7]
          Length = 1113

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 131/367 (35%), Gaps = 19/367 (5%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L+ L  D RI DN +L  A   +  K   +F A     R+     R        L  +++
Sbjct: 633 LLLLTRDFRINDNWSLIYAYEKAKKKKAHLF-ACTYLNRKEPFPKRHIDIKLKVLKNLEE 691

Query: 71  SLSQ-KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR--DKLLEKRL 127
           ++ +   I F        D+ +E+L  Y ++  +    +N    +NE R     L+E   
Sbjct: 692 NMKKILNIPFYLLTIYMIDEFMEFLRIYDIKTIICD--FN---PLNETRIFIQNLVELSN 746

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN-LVQADLRSLPVPAIRLTG 186
             ++     D   ++P            +   P  +  I   L++     +    I+   
Sbjct: 747 IKKIKILQVDSHNIVPIWITSKIEESCARTIKPKIQTHISTFLIEYVQLEMFDQIIKYPE 806

Query: 187 PVTPSNIPRFFDYPFQ-AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL 245
           P + S + +         +   F   EQ A  IL+ FC +K+  Y  +++ P  +  + L
Sbjct: 807 PFSISEVFKKLTVYIPCPVLLNFVCTEQKAHEILQNFCSKKLERYSLKKNDPNSEMINLL 866

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE--LIWREFYRHLMAFYPSVCM 303
           +PY++ G++S ++C   + +                 +E  ++ +E   +   +  +   
Sbjct: 867 TPYINFGIISSQRCVLEVNKYANSYPSINTISGKELFSEEMIMKKELADNFCYYNKNYDN 926

Query: 304 GKPFIPWTEKIEWNKDSH------LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
                 W +      DS           +K   T   + +    QL   G +H  LRM  
Sbjct: 927 FNGGKDWAKDSLKKHDSDKREYLYDFDDFKNAKTHDDLWNCCQLQLINEGIIHEFLRMYW 986

Query: 358 ASFLVKD 364
              ++  
Sbjct: 987 CKKILNW 993


>gi|87311465|ref|ZP_01093585.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645]
 gi|87285877|gb|EAQ77791.1| deoxyribodipyrimidine photolyase [Blastopirellula marina DSM 3645]
          Length = 494

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 71/471 (15%), Positives = 154/471 (32%), Gaps = 57/471 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+  + R   N +L  A   +      + +    +      S R   F+   +     
Sbjct: 25  LYWMIANRRTRCNFSLQRAVDWAQQLKKPLIVFEALRIDYPWASRRFHRFVLQGMRDNAA 84

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           +L +  +++  +      +      +   +  V  +  +        R  + + +R+   
Sbjct: 85  ALRRSPVLYYPYVEPGKHEDHGLFAALAARSCV--IVTDDFPCFFLPRMVRAVARRVD-- 140

Query: 131 VICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
           V+ +  D + +L P    +    +   +  F    +++ +    ++ P+   ++    + 
Sbjct: 141 VLLEQVDSNGIL-PMRAADRTFTVAHSFRRFLHHQLRDHLVDFPQADPLQDAQIPRAASK 199

Query: 191 SNIPRFFDYPFQAI--------------------DPMFPIGEQNALHILRKFCKEKVYYY 230
                  +YP  +                     D +   G   A   L  F  +++  Y
Sbjct: 200 LIANIQTNYPPASSEVLSAASEALDALPIDQSVGDAVMEGGSVAAQQTLDSFLGDRLLRY 259

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE--------------FVDLLIKPKS 276
            E+R+ P     S LSPYL  G +S    + +L E                 +      +
Sbjct: 260 GEERNSPESDAASGLSPYLHFGHISAHDIFVQLSERESWNVSHLADKATGSREGWWNMST 319

Query: 277 GAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWT------EKIEWNKDSHLLQAWKQG 329
            A S+L+ELI WRE   ++ +   +    +    W        + +     + L   +  
Sbjct: 320 DAESFLDELITWREVGYNMCSRESNYDRYQSLPDWALVTLGEHQKDPRPYVYDLAQLESS 379

Query: 330 YTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLA 386
            T   + +AA  QL   G MHN LRM+    +++                    +DG   
Sbjct: 380 RTHDQLWNAAQSQLVREGRMHNYLRMLWGKKILEWSTTPEEALAAMIQLNNKYAVDGRNP 439

Query: 387 SNNGGWQWAASTGNDSVPY-------FRIFNPTIQGKRFDPQGTFIRHWLP 430
           ++  G  W     + +           R  +     ++  P   +I+++ P
Sbjct: 440 NSYSGIFWCLGRYDRAWGPERKIFGKIRYMSSENTARKI-PVKRYIKNYAP 489


>gi|303276695|ref|XP_003057641.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460298|gb|EEH57592.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 781

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 8/140 (5%)

Query: 3   ATTAMSVHLVWLRN-DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           A+++   H+VW R  DLR+ D+  L  A   +   VI +F+  P +      S  ++  +
Sbjct: 367 ASSSSGAHIVWFRAGDLRVHDHPGLAEAAAMTTRAVIPLFVFDPSEIAHGTPSDARA--L 424

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
           + +++ ++ SL   G            D    + S       T L   R+ E   V   +
Sbjct: 425 HEAVVALRASLRALGSDLVVR----VGDPSMEMPSVAAALGATSLAAARELEWARVAGWR 480

Query: 122 -LLEKRLQHRVICKSFDDSV 140
             L       V C ++   +
Sbjct: 481 ETLAALRAAGVKCDTWHAPL 500


>gi|164455170|dbj|BAF97088.1| CPD photolyase [Oryza barthii]
 gi|164455178|dbj|BAF97092.1| CPD photolyase [Oryza barthii]
 gi|164455184|dbj|BAF97095.1| CPD photolyase [Oryza glaberrima]
 gi|164455186|dbj|BAF97096.1| CPD photolyase [Oryza glaberrima]
          Length = 506

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 149/452 (32%), Gaps = 46/452 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH--FIYASLLQV 68
           + W+  D R+ DN AL  A   + A    + +A     R   +SAR+    F+   L ++
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFSRPFLLSARRRQLGFLLRGLRRL 100

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRL 127
               + + + F       F      + +   +   + L  +           D ++    
Sbjct: 101 AADAAARHLPFFL-----FTGGPAEIPALVRRLGASTLVADFSPLRPVREALDAVVGDLR 155

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V     D   ++P       + +M      FR  + + + +  +    +PA+   
Sbjct: 156 REAPGVAVHQVDAHNVVPVW---TASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPW 212

Query: 186 GPVTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQR 234
               P        I R         +  +   GE+ A+  L      F  +++  Y   R
Sbjct: 213 DREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETDR 272

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + P      S LSPYL  G +S ++C    K+      + PKS        ++ RE   +
Sbjct: 273 NDPTKPRALSALSPYLHFGHISAQRCALEAKKC---RHLSPKSVDAFLEELVVRRELADN 329

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIG 347
              + P          W  K   +  +   +        +   T  P+ +A+  ++   G
Sbjct: 330 FCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHG 389

Query: 348 WMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-- 402
            MH  +RM  A  +++             Y      +DG   S   G  W+    +D   
Sbjct: 390 KMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGW 449

Query: 403 -----VPYFRIFNPTIQGKRFDPQG--TFIRH 427
                    R  N     ++FD     ++++ 
Sbjct: 450 KERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481


>gi|21758676|dbj|BAC05354.1| unnamed protein product [Homo sapiens]
          Length = 194

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 394 WAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD----- 448
                      +F  + P   G+R DP G +IR +LP L   P +YI+   +  +     
Sbjct: 6   CGCLVVPFFNSFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDLWNAPEGIQKV 65

Query: 449 -KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
            K  + +NYP P+V+H +A    + +     +Q
Sbjct: 66  AKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQ 98


>gi|153005863|ref|YP_001380188.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. Fw109-5]
 gi|152029436|gb|ABS27204.1| DNA photolyase FAD-binding [Anaeromyxobacter sp. Fw109-5]
          Length = 493

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 135/461 (29%), Gaps = 51/461 (11%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+    R+  N AL  A   +      V I    +      S R   F+   + +  +
Sbjct: 29  LYWMTAARRVRFNPALERAIALARELERPVAILEALRVGDPYASDRLHAFVLQGMAENAR 88

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L+  G V  +          E L    L  R   +  +        R+        Q  
Sbjct: 89  RLA--GRVLHHPYVERAPGEGEGLLE-ALAARACAVVTDDLPTFFLPRQCAA--AAAQVD 143

Query: 131 VICKSFDDSVLLP---PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--------- 178
           V  ++ D S ++P    G     A    +       A +  L  AD  +           
Sbjct: 144 VRVEAVDGSCVVPFRLAGKDFPTAHAYRRHLQRLLPAWLDRLPSADPLARAALPPPPALS 203

Query: 179 ------VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                  PA+       P+ +                 G + A   L ++ ++ +  Y +
Sbjct: 204 RGIAQRWPAVTPDALARPARLTASLPIDHGVPPAPLRGGARAAGVRLARWLEQGLPRYAD 263

Query: 233 QRDIPAIQGT-SQLSPYLSIGVLSPRQCWNRLKEE--------------FVDLLIKPKSG 277
            R  P  +G  S LSP+L  G +S  +    +                          + 
Sbjct: 264 ARSDPDEEGVASGLSPWLHFGHVSSFEVVRAVLRREGWTPALLSPGVTGARSGWWGVSAA 323

Query: 278 AFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGY 330
           A ++L++L+ WRE      A             W          +    ++         
Sbjct: 324 AEAFLDQLVTWRELGFATCAHRADHREYGSLPAWARATLEAHAGDPRPHAYDRDTLDAAR 383

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLAS 387
           T  P+ +AA RQL   G +HN LRM+    +++         E          LDG   +
Sbjct: 384 THDPLWNAAQRQLRVEGVIHNALRMLWGKKILEWSPSPRAALEAALELNDRWALDGRDPN 443

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           +  G  W     +      R   P     R+       R W
Sbjct: 444 SVSGVFWCLGRYDRPWGPER---PIFGTVRYMSSQNSARKW 481


>gi|76667611|dbj|BAE45635.1| photolyase [Oryza sativa Japonica Group]
          Length = 481

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 146/447 (32%), Gaps = 44/447 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH--FIYASLLQV 68
           + W+  D R+ DN AL  A   + A    + +A     R   +SAR+    F+   L ++
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRL 100

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRL 127
               + + + F       F      + +   +   + L  +           D ++    
Sbjct: 101 AADAAARHLPFFL-----FTGGPAEIPALVRRLGASTLVADFSPLRPVREALDAVVGDLR 155

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V     D   ++P       + +M      FR  + + + +  +    +PA+   
Sbjct: 156 REAPGVAVHQVDAHNVVPVW---TASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPW 212

Query: 186 GPVTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQR 234
               P        I R         +  +   GE+ A+  L      F  +++  Y   R
Sbjct: 213 DREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLSSKDGFLTKRIKSYETDR 272

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + P      S LSPYL  G +S  +C    K+      + PKS        ++ RE   +
Sbjct: 273 NDPTKPRALSGLSPYLHFGHISAHRCALEAKKC---RHLSPKSVDAFLEELVVRRELADN 329

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQLNTIG 347
              + P          W  K   +  +   +        +   T  P+ +A+  ++   G
Sbjct: 330 FCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHG 389

Query: 348 WMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-- 402
            MH  +RM  A  +++             Y      +DG   S   G  W+    +D   
Sbjct: 390 KMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGW 449

Query: 403 -----VPYFRIFNPTIQGKRFDPQGTF 424
                    R  N     ++FD   +F
Sbjct: 450 KERPVFGKIRYMNYAGCKRKFDVDASF 476


>gi|92429538|gb|ABD93513.2| DNA photolyase protein [Solanum chmielewskii]
          Length = 173

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 11/177 (6%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
           A HN    V+AV+   P  + +           ++ F+  S+  ++K+L  +G       
Sbjct: 1   AAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVR- 59

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLL 142
                     L           ++ +R+   +EV+ +  ++  ++   +  K F  S L 
Sbjct: 60  ---IGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLY 116

Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPVTPSNIPRFFD 198
               +     QM   Y  FR+ +    V+  + +L  +  +   G V P  IP   D
Sbjct: 117 HVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVD 173


>gi|325180775|emb|CCA15185.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
          Length = 716

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 84/467 (17%), Positives = 154/467 (32%), Gaps = 72/467 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIA---VFIAT----------PEQWRQHGIS-AR 56
           L W++  +R   N +L  A   + A  I    V+  +          P+       S  R
Sbjct: 240 LYWMQTSVRTKYNYSLEYAIAAAAALHIPLQVVYFFSDQSTVPASQLPKDPNAFAFSTER 299

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-----------EWLDSYCLQQRVTK 105
            + F    L   +K L ++G+ F+    +   D             + L S C Q     
Sbjct: 300 HAKFALEGLACTEKRLRERGLSFKVLYHTPEKDPPLVDGDSSSFCRKQLLSKCAQH-ALL 358

Query: 106 LFYNRQY-EINEVRRDKLLEKRLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTP-- 160
           +  +R Y     +   K      + ++       +  V++P  +         +   P  
Sbjct: 359 VVTDRPYLRPAALDTLKCATNASETQLPWGMVQIEGDVVVPCETTSKKEEYAARTIRPKI 418

Query: 161 ------------------FRKALIQNLVQADLR--SLPVPAIRLTGPVTPSNIPRFFD-Y 199
                             F +++ +NL Q   R   +  PA      +   N+ +  D  
Sbjct: 419 TQLLPSFIKELEHVSVPDFVQSVDRNLFQFPTRYFLVKSPASDTNEDILEFNLSQLKDIL 478

Query: 200 PFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
               +D        F  GE  A  + + F ++K+  Y   R+ P+  GTS +S YL  G 
Sbjct: 479 ALLKVDRNVPGLSNFRGGEDEASLLTKVFLEKKLSNYALGRNEPSNDGTSNISLYLHFGH 538

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTE 312
           +SP +      +         K+   ++L E+I  RE   +++ F P        IP   
Sbjct: 539 ISPVRIALATHKI---KAASSKASRDAFLEEMIVRRELSVNMVVFNPHTYDSMECIPNFA 595

Query: 313 KIEWNKDS-------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           K      +       + L+  +   T     +AA  ++   G MH  +RM  A  +++  
Sbjct: 596 KKTLEDHANDKRPFLYTLEELEAAKTYDQFWNAAQMEMLFSGKMHGYMRMYWAKKILEWS 655

Query: 366 LVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
               +             LD    ++  G  W+    +       IF
Sbjct: 656 ASPTQAYTHALYLNNKYCLDAPDPNSYTGIAWSFGKHDQGWKERPIF 702


>gi|325180778|emb|CCA15188.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
          Length = 758

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 84/467 (17%), Positives = 154/467 (32%), Gaps = 72/467 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIA---VFIAT----------PEQWRQHGIS-AR 56
           L W++  +R   N +L  A   + A  I    V+  +          P+       S  R
Sbjct: 282 LYWMQTSVRTKYNYSLEYAIAAAAALHIPLQVVYFFSDQSTVPASQLPKDPNAFAFSTER 341

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-----------EWLDSYCLQQRVTK 105
            + F    L   +K L ++G+ F+    +   D             + L S C Q     
Sbjct: 342 HAKFALEGLACTEKRLRERGLSFKVLYHTPEKDPPLVDGDSSSFCRKQLLSKCAQH-ALL 400

Query: 106 LFYNRQY-EINEVRRDKLLEKRLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTP-- 160
           +  +R Y     +   K      + ++       +  V++P  +         +   P  
Sbjct: 401 VVTDRPYLRPAALDTLKCATNASETQLPWGMVQIEGDVVVPCETTSKKEEYAARTIRPKI 460

Query: 161 ------------------FRKALIQNLVQADLR--SLPVPAIRLTGPVTPSNIPRFFD-Y 199
                             F +++ +NL Q   R   +  PA      +   N+ +  D  
Sbjct: 461 TQLLPSFIKELEHVSVPDFVQSVDRNLFQFPTRYFLVKSPASDTNEDILEFNLSQLKDIL 520

Query: 200 PFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
               +D        F  GE  A  + + F ++K+  Y   R+ P+  GTS +S YL  G 
Sbjct: 521 ALLKVDRNVPGLSNFRGGEDEASLLTKVFLEKKLSNYALGRNEPSNDGTSNISLYLHFGH 580

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTE 312
           +SP +      +         K+   ++L E+I  RE   +++ F P        IP   
Sbjct: 581 ISPVRIALATHKI---KAASSKASRDAFLEEMIVRRELSVNMVVFNPHTYDSMECIPNFA 637

Query: 313 KIEWNKDS-------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           K      +       + L+  +   T     +AA  ++   G MH  +RM  A  +++  
Sbjct: 638 KKTLEDHANDKRPFLYTLEELEAAKTYDQFWNAAQMEMLFSGKMHGYMRMYWAKKILEWS 697

Query: 366 LVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
               +             LD    ++  G  W+    +       IF
Sbjct: 698 ASPTQAYTHALYLNNKYCLDAPDPNSYTGIAWSFGKHDQGWKERPIF 744


>gi|325180776|emb|CCA15186.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
          Length = 737

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 84/467 (17%), Positives = 154/467 (32%), Gaps = 72/467 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIA---VFIAT----------PEQWRQHGIS-AR 56
           L W++  +R   N +L  A   + A  I    V+  +          P+       S  R
Sbjct: 261 LYWMQTSVRTKYNYSLEYAIAAAAALHIPLQVVYFFSDQSTVPASQLPKDPNAFAFSTER 320

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-----------EWLDSYCLQQRVTK 105
            + F    L   +K L ++G+ F+    +   D             + L S C Q     
Sbjct: 321 HAKFALEGLACTEKRLRERGLSFKVLYHTPEKDPPLVDGDSSSFCRKQLLSKCAQH-ALL 379

Query: 106 LFYNRQY-EINEVRRDKLLEKRLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTP-- 160
           +  +R Y     +   K      + ++       +  V++P  +         +   P  
Sbjct: 380 VVTDRPYLRPAALDTLKCATNASETQLPWGMVQIEGDVVVPCETTSKKEEYAARTIRPKI 439

Query: 161 ------------------FRKALIQNLVQADLR--SLPVPAIRLTGPVTPSNIPRFFD-Y 199
                             F +++ +NL Q   R   +  PA      +   N+ +  D  
Sbjct: 440 TQLLPSFIKELEHVSVPDFVQSVDRNLFQFPTRYFLVKSPASDTNEDILEFNLSQLKDIL 499

Query: 200 PFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
               +D        F  GE  A  + + F ++K+  Y   R+ P+  GTS +S YL  G 
Sbjct: 500 ALLKVDRNVPGLSNFRGGEDEASLLTKVFLEKKLSNYALGRNEPSNDGTSNISLYLHFGH 559

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTE 312
           +SP +      +         K+   ++L E+I  RE   +++ F P        IP   
Sbjct: 560 ISPVRIALATHKI---KAASSKASRDAFLEEMIVRRELSVNMVVFNPHTYDSMECIPNFA 616

Query: 313 KIEWNKDS-------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           K      +       + L+  +   T     +AA  ++   G MH  +RM  A  +++  
Sbjct: 617 KKTLEDHANDKRPFLYTLEELEAAKTYDQFWNAAQMEMLFSGKMHGYMRMYWAKKILEWS 676

Query: 366 LVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
               +             LD    ++  G  W+    +       IF
Sbjct: 677 ASPTQAYTHALYLNNKYCLDAPDPNSYTGIAWSFGKHDQGWKERPIF 723


>gi|9964339|ref|NP_064807.1| putative CPD photolyase [Amsacta moorei entomopoxvirus 'L']
 gi|9944548|gb|AAG02731.1|AF250284_25 AMV025 [Amsacta moorei entomopoxvirus 'L']
          Length = 453

 Score = 93.9 bits (232), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 140/410 (34%), Gaps = 37/410 (9%)

Query: 16  NDLRITDNKALY-----AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
            DLR+ DN +       A  +NS   V+ +        + + I+ RQ  F+Y  L + + 
Sbjct: 30  RDLRVYDNWSFLYSQNIAYLNNSSMYVLYL------INKNNNINIRQYKFLYEGLPEFES 83

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK--LFYNRQYEINEVRRDKLLEKRLQ 128
              +  + F     +N   S            + +  L ++++Y ++ ++         +
Sbjct: 84  QCKKCNVSFHLLSYNNNIISNFINKYKIGHVIIEQMPLLFHKKYYLDPLK---------K 134

Query: 129 HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
             V     D   ++P     +      +     R  + +   Q  +    V    +    
Sbjct: 135 LNVNVYIVDSHNIIPVWVTSDKQEYNARTI---RIKINKLKDQYLIEFPKVKISNIQPIF 191

Query: 189 TPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
             +N     +Y  + I+      G  N ++ +  F K K+  Y ++++ P  + TS LSP
Sbjct: 192 VENNFDIIPNYDKKLINIYEIVGGYTNGINRMNNFFKNKINTYKDKKNNPNYENTSILSP 251

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
           +L  G++S ++C      +   +         S++ E+  R+       +Y +       
Sbjct: 252 WLHCGMISAQRCVLEA-NKLKKIKDYNIESIDSFIEEIFIRKELSDNFCYYNNNYKSFAS 310

Query: 308 IPWT-------EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
            P          K +       L+  + G T   + +     L   G+++  +RM  A  
Sbjct: 311 CPNWAILTLEIHKTDKRNKIFSLRELEYGKTDNKLWNYCQYYLLKFGYLNGYMRMFWAKK 370

Query: 361 LVKDLLVDWRIGEE--YF-MSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           L++         ++  Y       DG          W+    +D     R
Sbjct: 371 LIEWTNSPQDAIDKTIYLNDKYFFDGYDPMGYVNILWSIGGLHDRAFKER 420


>gi|323451015|gb|EGB06894.1| hypothetical protein AURANDRAFT_28788 [Aureococcus anophagefferens]
          Length = 183

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 10/132 (7%)

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           M+ ASFLV+ L V W  G  +F   L+D D A N   WQ A  +G D   +  + +P   
Sbjct: 1   MVVASFLVEYLRVSWVQGAAWFEETLVDMDPAINAMMWQNAGRSGIDQWNF--VMSPENA 58

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHS------WLDKNDLSLNYPLPIVDHKKACH 468
            +  DP G F   ++PEL  +PT+++H P +            L   YPL +VD      
Sbjct: 59  SQ--DPTGKFTLRYVPELAGLPTKHLHRPWTAPAAALAKAGVALGETYPLRVVDLAAERA 116

Query: 469 HTLNQYYAAKKQ 480
            +     A + +
Sbjct: 117 LSTAAVLAMRAR 128


>gi|218184184|gb|EEC66611.1| hypothetical protein OsI_32845 [Oryza sativa Indica Group]
          Length = 516

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 78/457 (17%), Positives = 151/457 (33%), Gaps = 50/457 (10%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH--FIYASLLQVQK 70
           W+  D R+ DN AL  A   + A    + +A     R   +SAR+    F+   L ++  
Sbjct: 43  WMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLAA 102

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRLQH 129
             + + + F       F      + +   +   + L  +           D ++    + 
Sbjct: 103 DAAARHLPFFL-----FTGGPAEIPALVRRLGASTLVADFSPLRPVREALDAVVGDLRRE 157

Query: 130 --RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
              V     D   ++P       + +M      FR  + + + +  +    +PA+     
Sbjct: 158 APGVAVHQVDAHNVVPVW---TASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPWDR 214

Query: 188 VTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQRDI 236
             P        I R         +  +   GE+ A+  L      F  +++  Y   R+ 
Sbjct: 215 EQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETDRND 274

Query: 237 PAIQ-GTSQLSPYLSIGVLSPRQCWNRLKE------EFVDLLIKPKSGAFSWLNEL-IWR 288
           P      S LSPYL  G +S  +C    K+      +  ++    K    ++L EL + R
Sbjct: 275 PTKPRALSGLSPYLHFGHISAHRCALEAKKCRHLSPKMFEVTCVLKQSVDAFLEELVVRR 334

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAMRQ 342
           E   +   + P          W  K   +  +   +        +   T  P+ +A+  +
Sbjct: 335 ELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLE 394

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTG 399
           +   G MH  +RM  A  +++             Y      +DG   S   G  W+    
Sbjct: 395 MVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGL 454

Query: 400 NDS-------VPYFRIFNPTIQGKRFDPQG--TFIRH 427
           +D            R  N     ++FD     ++++ 
Sbjct: 455 HDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 491


>gi|325180777|emb|CCA15187.1| deoxyribodipyrimidine photolyase putative [Albugo laibachii Nc14]
          Length = 779

 Score = 93.5 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 84/467 (17%), Positives = 154/467 (32%), Gaps = 72/467 (15%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIA---VFIAT----------PEQWRQHGIS-AR 56
           L W++  +R   N +L  A   + A  I    V+  +          P+       S  R
Sbjct: 303 LYWMQTSVRTKYNYSLEYAIAAAAALHIPLQVVYFFSDQSTVPASQLPKDPNAFAFSTER 362

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-----------EWLDSYCLQQRVTK 105
            + F    L   +K L ++G+ F+    +   D             + L S C Q     
Sbjct: 363 HAKFALEGLACTEKRLRERGLSFKVLYHTPEKDPPLVDGDSSSFCRKQLLSKCAQH-ALL 421

Query: 106 LFYNRQY-EINEVRRDKLLEKRLQHRVIC--KSFDDSVLLPPGSILNHALQMYKVYTP-- 160
           +  +R Y     +   K      + ++       +  V++P  +         +   P  
Sbjct: 422 VVTDRPYLRPAALDTLKCATNASETQLPWGMVQIEGDVVVPCETTSKKEEYAARTIRPKI 481

Query: 161 ------------------FRKALIQNLVQADLR--SLPVPAIRLTGPVTPSNIPRFFD-Y 199
                             F +++ +NL Q   R   +  PA      +   N+ +  D  
Sbjct: 482 TQLLPSFIKELEHVSVPDFVQSVDRNLFQFPTRYFLVKSPASDTNEDILEFNLSQLKDIL 541

Query: 200 PFQAID------PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV 253
               +D        F  GE  A  + + F ++K+  Y   R+ P+  GTS +S YL  G 
Sbjct: 542 ALLKVDRNVPGLSNFRGGEDEASLLTKVFLEKKLSNYALGRNEPSNDGTSNISLYLHFGH 601

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTE 312
           +SP +      +         K+   ++L E+I  RE   +++ F P        IP   
Sbjct: 602 ISPVRIALATHKI---KAASSKASRDAFLEEMIVRRELSVNMVVFNPHTYDSMECIPNFA 658

Query: 313 KIEWNKDS-------HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           K      +       + L+  +   T     +AA  ++   G MH  +RM  A  +++  
Sbjct: 659 KKTLEDHANDKRPFLYTLEELEAAKTYDQFWNAAQMEMLFSGKMHGYMRMYWAKKILEWS 718

Query: 366 LVDWRIGEEYFM---SQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
               +             LD    ++  G  W+    +       IF
Sbjct: 719 ASPTQAYTHALYLNNKYCLDAPDPNSYTGIAWSFGKHDQGWKERPIF 765


>gi|164455160|dbj|BAF97083.1| CPD photolyase [Oryza meridionalis]
 gi|164455174|dbj|BAF97090.1| CPD photolyase [Oryza meridionalis]
          Length = 506

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 75/452 (16%), Positives = 149/452 (32%), Gaps = 46/452 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH--FIYASLLQV 68
           + W+  D R+ DN AL  A   + A    + +A     R   +SAR+    F+   L ++
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRL 100

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRL 127
               + + + F        +     + +   +   + L  +           D ++    
Sbjct: 101 AADAAARHLPFFLLTGGPAE-----IPALVRRLGASTLVADFSPLRPVREALDAVVGDLR 155

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V     D   ++P       + +M      FR  + + + +  +    +PA+   
Sbjct: 156 REAPGVAVHQVDAHNVVPVW---TASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPW 212

Query: 186 GPVTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQR 234
               P        I R         +  +   GE+ A+  L      +  +++  Y   R
Sbjct: 213 DREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAMEALLGSKHGYLTKRIKSYETDR 272

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + P      S LSPYL  G +S ++C    K+      + PKS        ++ RE   +
Sbjct: 273 NDPTKPRALSGLSPYLHFGHISAQRCALEAKKR---RHLSPKSIDAFLEELVVRRELADN 329

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSH------LLQAWKQGYTGFPIIDAAMRQLNTIG 347
              + P          W  K   +  +         +  +   T  P+ +A+  ++   G
Sbjct: 330 FCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREHLENAKTHDPLWNASQLEMVHHG 389

Query: 348 WMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-- 402
            MH  +RM  A  +++             Y      +DG   S   G  W+    +D   
Sbjct: 390 KMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGFVGCMWSICGLHDQGW 449

Query: 403 -----VPYFRIFNPTIQGKRFDPQG--TFIRH 427
                    R  N     ++FD     ++++ 
Sbjct: 450 KERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481


>gi|164455172|dbj|BAF97089.1| CPD photolyase [Oryza meridionalis]
          Length = 506

 Score = 93.2 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 75/452 (16%), Positives = 149/452 (32%), Gaps = 46/452 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH--FIYASLLQV 68
           + W+  D R+ DN AL  A   + A    + +A     R   +SAR+    F+   L ++
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRL 100

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRL 127
               + + + F        +     + +   +   + L  +           D ++    
Sbjct: 101 AADAAARHLPFFLLTGGPAE-----IPALVRRLGASTLVADFSPLRPVREALDAVVGDLR 155

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V     D   ++P       + +M      FR  + + + +  +    +PA+   
Sbjct: 156 REAPGVAVHQVDAHNVVPVW---TASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPW 212

Query: 186 GPVTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQR 234
               P        I R         +  +   GE+ A+  L      +  +++  Y   R
Sbjct: 213 DREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAMEALLGSKHGYLTKRIKSYETDR 272

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           + P      S LSPYL  G +S ++C    K+      + PKS        ++ RE   +
Sbjct: 273 NDPTKPRALSGLSPYLHFGHISAQRCALEAKKR---RHLSPKSIDAFLEELVVRRELADN 329

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSH------LLQAWKQGYTGFPIIDAAMRQLNTIG 347
              + P          W  K   +  +         +  +   T  P+ +A+  ++   G
Sbjct: 330 FCYYQPQYGSLSGAWEWARKTLMDHAADKREHIYTREHLENAKTHDPLWNASQLEMVHHG 389

Query: 348 WMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLLDGDLASNNGGWQWAASTGNDS-- 402
            MH  +RM  A  +++             Y      +DG   S   G  W+    +D   
Sbjct: 390 KMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEIDGRDPSGFVGCMWSICGLHDQGW 449

Query: 403 -----VPYFRIFNPTIQGKRFDPQG--TFIRH 427
                    R  N     ++FD     ++++ 
Sbjct: 450 KERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 481


>gi|89255766|ref|YP_513128.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009709|ref|ZP_02274640.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367212|ref|ZP_04983242.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica 257]
 gi|290953050|ref|ZP_06557671.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143597|emb|CAJ78781.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253032|gb|EBA52126.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica 257]
          Length = 201

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 82/214 (38%), Gaps = 17/214 (7%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +S RQ  F+   L ++   L++ G            D++E  +    +  +  ++ +++ 
Sbjct: 1   MSHRQYLFLSECLEELNTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQET 56

Query: 113 EINEV-RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
             +   +RD  LEK  +   I              ++            + + + + +++
Sbjct: 57  WNDWTYQRDIKLEKFFKQNNIVWHQPYQ-----NGVVRCLADRDNWALLWHQRMSEKIIR 111

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
           A  +   +   ++  P   S      D  +         G   AL IL  F  ++   Y 
Sbjct: 112 APTKLKFICENQIKIPTAES-----LDLEYDDCYKRQKGGRIRALRILDSFLYQRGCGYT 166

Query: 232 EQRDIP--AIQGTSQLSPYLSIGVLSPRQCWNRL 263
           ++   P  A +  S+LSPY++ GV+S ++ + + 
Sbjct: 167 KEMSSPVTAFKSCSRLSPYIAFGVISLKEIYQKA 200


>gi|217074548|gb|ACJ85634.1| unknown [Medicago truncatula]
          Length = 235

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 9   VHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYA 63
             +VW RNDLR+ DN+AL  A + S   V+ V+   P  + +           ++ F+  
Sbjct: 119 TAIVWFRNDLRVHDNEALNTANNES-ISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIE 177

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99
           S+  ++K+L  +G              +E       
Sbjct: 178 SISDLRKNLKARGSDLVVRVGKPETVLVELAKKLGR 213


>gi|116074855|ref|ZP_01472116.1| photolyase protein family [Synechococcus sp. RS9916]
 gi|116068077|gb|EAU73830.1| photolyase protein family [Synechococcus sp. RS9916]
          Length = 495

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 103/295 (34%), Gaps = 20/295 (6%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
           G +L            F     + L +                 T          P   +
Sbjct: 159 GVLLTPEGGPIGGQWSFDADNRKKLPKGIAVPQEPTCTPFVDHATTLAQLETEALPLIGV 218

Query: 205 --DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQ 258
             D ++PI  Q A   L +F +E+  ++ +  D  +    +     L+P L+IG+L+P Q
Sbjct: 219 SKDCLYPIDHQGAQDWLDRFLEERFEHFGDYEDAISRHHRVMWHGVLTPMLNIGLLTPEQ 278

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
              R  E      I P +    ++ ++I WREF   +   +        F  +       
Sbjct: 279 VLRRALEAGESRSI-PLNSLEGFVRQIIGWREFMASMYQRHGRQMRTTNFWGF------- 330

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
            +  L +A+  G TG P ID A+      GW H+  R++    ++           ++FM
Sbjct: 331 NNQPLPEAFYTGTTGLPPIDDAIHHALETGWCHHIERLMLIGNVMLLCRFHPDRVYQWFM 390

Query: 378 SQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
              +D        +  G  Q+A      + PY    N   +   + P+G +   W
Sbjct: 391 DLFVDAYDWVMVPNVYGMSQFADGGLFTTKPYLSGSNYVRKMSDY-PKGDWCDIW 444


>gi|24215349|ref|NP_712830.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45657217|ref|YP_001303.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196458|gb|AAN49848.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45600455|gb|AAS69940.1| deoxyribodipyrimidine photolyase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 516

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 87/452 (19%), Positives = 152/452 (33%), Gaps = 57/452 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+    R+  N +L  + H S      + I  P +      S R   FI   +    K
Sbjct: 26  LYWMSMARRLVWNHSLDYSIHLSQKYKKELLIYEPLKMNYPWSSLRLHKFILEGMSYNIK 85

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN------EVRRDKLLE 124
              + G+ ++    +  +   E  +    +     L     Y         E    K+  
Sbjct: 86  EAKRLGLTYRAFVETPGNRIEEAFEKISSE---AALVITDDYPAYIIPELLEQVSKKIKC 142

Query: 125 KRLQ---HRVICKSFDDSVLLPPGSILNHALQM----------YKVYTPFRKALIQNLVQ 171
           K L    + +I  +F    +     +     ++          +K   PFR+     L +
Sbjct: 143 KFLAVDSNSIIPLTFYGEFVSAARILRPRVHKLFPEVWKFRSFHKPNKPFREKGDSWLEK 202

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYY 229
                L             S I +  ++ FQ I P+     G +  + +L+KF K  +  
Sbjct: 203 NPNSPLKKNIWFEGDVDQISEICKKCNFNFQNIPPVPGKKGGREEGIKLLQKFLKRGLSG 262

Query: 230 YVEQRDI---PAIQGTSQLSPYLSIGVLSPRQCWNRLK-----------------EEFVD 269
           Y E R     P    +S LSPY+  G +S  +  + +                  +   +
Sbjct: 263 YAELRSNPKPPEESYSSFLSPYIHFGHISQEEIVSEVLNWNLDGSWTPGVIIPENKNRKE 322

Query: 270 LLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWT--EKIEWNKDSHLLQAW 326
               P     S+L+ELI WR+    +    PS       +P    + ++++K+      +
Sbjct: 323 GYFHPDPNVNSFLDELITWRDVGFLMFWKKPSFRKDLSILPDWIQKNLDFHKNDVRPYIY 382

Query: 327 -----KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMS 378
                +   T   I +AA ++L   G M N LRM+          D    + I EE+   
Sbjct: 383 TKEQLENSKTHDVIWNAAQKELVLSGCMQNYLRMLWGKKVIEWSPDYQTAFEILEEFNNK 442

Query: 379 QLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
              DG   ++  G  W    G    P+F   N
Sbjct: 443 YAYDGRDPNSYNGILW--CFGLFDRPWFPERN 472


>gi|298162610|gb|ADI59672.1| cryptochrome [Haliotis discus hannai]
          Length = 96

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLL 366
            P   +I W+++   L  W +G TGFP IDA M QL   GW+H+  R   A FL + DL 
Sbjct: 16  NPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 75

Query: 367 VDWRIGEEYFMSQLLDGDLAS 387
           + W  G + F   LLD D + 
Sbjct: 76  ISWEEGMKVFEELLLDADWSV 96


>gi|262198146|ref|YP_003269355.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365]
 gi|262081493|gb|ACY17462.1| DNA photolyase FAD-binding protein [Haliangium ochraceum DSM 14365]
          Length = 496

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 124/440 (28%), Gaps = 47/440 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W+    R   N AL  A   S A    + +    +      S R   F+   +     
Sbjct: 29  LYWMIAARRTRYNFALERALAWSRALGKPLVVLEALRCDYPWASERLHRFVVDGMSDQSA 88

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
           + +       Y+                L      +  +        R      + L   
Sbjct: 89  AFAD--TPVAYYPYLEPRPGAGRGLLAALAAHACVVVTDEFPCFFLPRMVAAAARSLD-- 144

Query: 131 VICKSFDDSVLLPPGSI----LNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
           V  ++ D + L P  +        A     +       L    +   L   P        
Sbjct: 145 VQVQAVDGNGLYPLAATERVFTTAASFRRHLQKELPAHLGDMPMAEPLAHAPPRDAAHAL 204

Query: 187 PVTPSNIPRFFDYPFQAIDPMF---------------PIGEQNALHILRKFCKEKVYYYV 231
           P                                      G + A   L +F +  +  Y+
Sbjct: 205 PAAIRKRWPPASLGRPGASDALLSALRFDRAVEAAPVRGGARAAGETLERFVRAGLPRYL 264

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE--------------FVDLLIKPKSG 277
           E R+ PA   TSQLSPYL  G +S  + + R+                   +      S 
Sbjct: 265 EARNQPADPVTSQLSPYLHFGHISAHEVFRRVMARDQWTPDRMAPRATGSREGFWGASSE 324

Query: 278 AFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKI------EWNKDSHLLQAWKQGY 330
              +L+ELI WRE   ++ A        +    W +        +     + L  ++Q  
Sbjct: 325 VEGFLDELITWREIGYNMAAKRDDYDRYESLPAWAQTTLEEHTGDPRPHLYELDEFEQAR 384

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLAS 387
           T   + +AA  QL   G +HN +RM+    +++                    LDG   +
Sbjct: 385 THDALWNAAQTQLVREGRIHNYMRMLWGKKILEWTRTPRDALAVMIELNNRYALDGRNPN 444

Query: 388 NNGGWQWAASTGNDSVPYFR 407
           +  G  W     + +    R
Sbjct: 445 SYSGIFWCLGRYDRAWGPER 464


>gi|87124470|ref|ZP_01080319.1| photolyase protein family protein [Synechococcus sp. RS9917]
 gi|86168042|gb|EAQ69300.1| photolyase protein family protein [Synechococcus sp. RS9917]
          Length = 482

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 74/433 (17%), Positives = 146/433 (33%), Gaps = 40/433 (9%)

Query: 21  TDNKALY--AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
            D+  L    A    +  ++      P    Q     ++      SL   ++ L   G  
Sbjct: 14  ADHPGLAPGRAVVLVEEPLLL--GTDPSWPLQLH--PQKLALHRHSLEAYRRRLETAGHP 69

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
            +  +      + + L +  L Q V  L      +    RR +    R    +    +  
Sbjct: 70  VRLQRHDQAASTDDHL-ALLLAQGVRHLHLVDPVDDWLERRIRRWSAR--EGLRLTWYAT 126

Query: 139 SVLLPP---GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR 195
            +LL P   G+      +   +   + +   +  V  D +  PV             +P+
Sbjct: 127 PMLLTPVEEGAAFLARGKKPSMARFYERQRRRLGVLIDPQGQPVGGRWSFDADNRKKLPK 186

Query: 196 FFDYPFQAIDPM------------FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--- 240
               P   + P+             PI    A   L  F  +++  +    D  + +   
Sbjct: 187 QIQLPPNPLHPLGADPQADPETCLVPIDHSGAERWLDAFLAQRLQQFGAYEDAISREHHV 246

Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYP 299
              S L+P L+IG+L+P+Q  +R      +    P +    ++ ++I    +  LM  + 
Sbjct: 247 LWHSVLTPMLNIGLLTPQQVLDRTLAR-AEAGDVPHNSLEGFVRQIIGWREFMALMYRHH 305

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            V +              +D  + +A+  G TG P IDA ++++   G+ H+  R++   
Sbjct: 306 GVTLRNG------NFWGLEDRPIPEAFSTGDTGLPPIDAVIQRVRRSGYCHHIERLMLLG 359

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
            ++            +FM   LD        +  G  Q+A      + PY    N   + 
Sbjct: 360 NVMLLCGFHPTRICNWFMELFLDAYDWVMVPNVYGMSQFADGGLFTTKPYVSGSNYVRKM 419

Query: 416 KRFDPQGTFIRHW 428
             + P+G +   W
Sbjct: 420 SDY-PKGPWCDVW 431


>gi|283778509|ref|YP_003369264.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
 gi|283436962|gb|ADB15404.1| DNA photolyase FAD-binding protein [Pirellula staleyi DSM 6068]
          Length = 502

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 77/458 (16%), Positives = 147/458 (32%), Gaps = 62/458 (13%)

Query: 11  LVW---LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W    R   R   N +L  A   +      + I    + R    S R   FI   +  
Sbjct: 25  LYWMIAFR---RRRSNFSLQRAVEWARELRKPLVILEAVRTRYEWASDRLHRFIIEGMQD 81

Query: 68  VQKSLSQK---GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
               L +    G+V+  +           L++   +     +     +    + +   + 
Sbjct: 82  NAHDLGELRQSGVVYHPYVEPTHGAGAGLLEALAKR---AAVVITDDFPCFFLPQMTKVA 138

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
            R +  V  ++ D + +L P    +    M   +  + +  ++  +  +      P  R+
Sbjct: 139 AR-KVPVRMETIDGNGIL-PMRAADKTFTMAFHFRRWLQKNLKPHLAEEAFPEEDPLARV 196

Query: 185 TGPVTPSNIPRFFD-YPFQAIDPMF-------------------PIGEQNALHILRKFCK 224
             P          + +P      +                      G  +A  +L +F  
Sbjct: 197 KLPALKKLPAEITERWPAADFKQLLGARGLAQLPIDHSVTPTSEVGGAASAARVLERFLD 256

Query: 225 EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV------DLLIKPKSGA 278
            ++  Y E R+ P     S LSP+L  G +S      R                  K+GA
Sbjct: 257 SRLSRYGE-RNEPDANAASGLSPWLHFGHVSVHDIARRALARESWSHAKLSAKTDGKAGA 315

Query: 279 FS--------WLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK------IEWNKDSHLL 323
           +         +L+ELI WRE   +  +   +    +    W +K      ++   + + L
Sbjct: 316 WWGVSAACEGFLDELITWREIGFNFCSRNDNFDQDESLPTWVQKTLDKHAVDPRPNLYTL 375

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW---RIGEEYFMSQL 380
             ++   T   + +AA RQL   G +HN +RM+    +++         RI  +      
Sbjct: 376 DQFESSTTHDLLWNAAQRQLVREGRIHNYMRMLWGKKILEWSTSPREALRIMIQLNNKYA 435

Query: 381 LDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           LDG   ++  G  W     +      R   P     R+
Sbjct: 436 LDGRNPNSYSGIFWILGRYDRPWSPER---PIFGNIRY 470


>gi|218459246|ref|ZP_03499337.1| Deoxyribodipyrimidine photo-lyase [Rhizobium etli Kim 5]
          Length = 141

 Score = 90.8 bits (224), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 5/129 (3%)

Query: 39  AVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98
            ++I  P       + A Q+ +++ SL  +  SL ++             +++E L    
Sbjct: 13  PLYIREPTPAGTGPLGAAQAWWLHHSLEALDMSLRKRQGRLVLASG----EALEVLRGVI 68

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSILNHALQMYKV 157
            +     +++NR+Y+ + +  D  ++  L+ + I  +SF   +   P  ++      Y+V
Sbjct: 69  RKSSADAVYWNRRYDPSGMSIDVRIKAELEKQGIEARSFTGQLPHDPCRLVTGKGTPYRV 128

Query: 158 YTPFRKALI 166
           YTPF +AL 
Sbjct: 129 YTPFWRALE 137


>gi|92429546|gb|ABD93517.2| DNA photolyase protein [Solanum chilense]
          Length = 173

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 11/169 (6%)

Query: 37  VIAVFIATPEQWRQHG-----ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91
           V+AV+   P  + +           ++ F+  S+  ++K+L  +G               
Sbjct: 9   VLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVR----IGKPE 64

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNH 150
             L           ++ +R+   +EV+ +  ++  ++   +  K F  S L     +   
Sbjct: 65  TVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFK 124

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPVTPSNIPRFFD 198
             QM   Y  FR+ +    V+  + +L  +  +   G V P  IP   D
Sbjct: 125 LEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVD 173


>gi|157888634|emb|CAP09289.1| cryptochrome 3 [Danio rerio]
          Length = 89

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 10 HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
           + W R  LR+ DN AL  A + +D  V  V+I  P       +   +  F+  SL  + 
Sbjct: 5  SVHWFRKGLRLHDNPALQEALNGADT-VRCVYILDPWFAGSANVGVNRWRFLLESLEDLD 63

Query: 70 KSLSQKGIVFQYHQCSNFDDSIEWLD 95
           SL +        +    D       
Sbjct: 64 TSLRKLNSRLFVVRGQPTDVFPRLFK 89


>gi|311743861|ref|ZP_07717667.1| deoxyribodipyrimidine photolyase family protein [Aeromicrobium
           marinum DSM 15272]
 gi|311312991|gb|EFQ82902.1| deoxyribodipyrimidine photolyase family protein [Aeromicrobium
           marinum DSM 15272]
          Length = 416

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 87/248 (35%), Gaps = 23/248 (9%)

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE-KVYYYV 231
                P+P +  T  +             +  + + P G +              +  Y 
Sbjct: 1   MPALPPLPHVDDTDALLAWVGTHLGHLTLEGPEGIRPGGHRGGQTAADGALATLDITGYS 60

Query: 232 EQRDIPAIQ---GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
             R     +   G S++SPY+  G+L     W+ + +        P S    + +EL+W+
Sbjct: 61  RSRSTVLPERARGASRMSPYIRHGLLDLPTVWDAVTDA-------PASDRRRYRDELLWQ 113

Query: 289 EFYRHLMAFYP-SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           E+ RHL A    +      F P     +   D  +               A  R+L   G
Sbjct: 114 EYARHLYARLGTATAEPLRFDPPRPAADPQWDEQM-----------ACTAAVRRELKDDG 162

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           W+ N+ RM  AS         WR GE+ F   LLDG  A+N  GWQW   TG      F 
Sbjct: 163 WLVNQTRMWWASHWTVRHGRHWRDGEDDFFRHLLDGSRAANRLGWQWTVGTGTGKPYGFS 222

Query: 408 IFNPTIQG 415
            +    + 
Sbjct: 223 RWQVEKRA 230


>gi|295313748|ref|ZP_06804325.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 195

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 78/207 (37%), Gaps = 17/207 (8%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV-R 118
           F+   L ++   L++ G            D++E  +    +  +  ++ +++   +   +
Sbjct: 2   FLSECLEELNTELTKLGQSLAIM----LGDAVEIFEQLIQKYNIKNVWSHQETWNDWTYQ 57

Query: 119 RDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           RD  LEK  +   I              ++            + + + + +++A  +   
Sbjct: 58  RDIKLEKFFKQNNIVWHQPYQ-----NGVVRCLADRDNWALLWHQRMSEKIIRAPTKLKF 112

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP- 237
           +   ++  P   S      D  +         G   AL IL  F  ++   Y ++   P 
Sbjct: 113 ICENQIKIPTAES-----LDLEYDDCYKRQKGGRIRALRILDSFLYQRGCGYTKEMSSPV 167

Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRL 263
            A +  S+LSPY++ GV+S ++ + + 
Sbjct: 168 TAFKSCSRLSPYIAFGVISLKEIYQKA 194


>gi|78184690|ref|YP_377125.1| photolyase family protein [Synechococcus sp. CC9902]
 gi|78168984|gb|ABB26081.1| photolyase protein family [Synechococcus sp. CC9902]
          Length = 505

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 103/287 (35%), Gaps = 20/287 (6%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
           +++     +     F     + L +     L   + +     +     +    P      
Sbjct: 171 LVDADGAPHGGQWSFDADNRKKLPKGITVPLEPASPQQIDVASILKQLKHEQLPLLGNGD 230

Query: 207 MF--PIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCW 260
            F  P+  Q A   L +F  ++   +    D  +    +     L+P L+IG+L+PRQ  
Sbjct: 231 QFNYPVNHQQAALWLDQFLDDRFKDFGAYEDAISRYHRVMWHGVLTPMLNIGLLTPRQIL 290

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           +R  E +      P +    ++ ++I WREF   +   +        F  +       +D
Sbjct: 291 DRTLE-YSKKNDIPLNSLEGFIRQIIGWREFMAVMYRRHGVEMRNSNFWEF-------ED 342

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
             +  A+  G TG P ID A++     G+ H+  R++    +++           +FM  
Sbjct: 343 RPIPDAFYTGNTGLPPIDDAIKHALQTGYCHHIERLMLVGNIMQLCGFHPNRVYVWFMEL 402

Query: 380 LLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
            +D        +  G  Q+A      + PY    N   +   + P+G
Sbjct: 403 FVDAYDWVMVPNVYGMSQFADGGIFTTKPYVSGSNYVRKMSDY-PKG 448


>gi|313231151|emb|CBY19149.1| unnamed protein product [Oikopleura dioica]
          Length = 187

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 8/172 (4%)

Query: 4   TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ---HGISARQSHF 60
              + + L   R DLR+ DN +L  A  +   +++ VF+  PEQ         S     F
Sbjct: 16  DDGVKIALFIFRRDLRLIDNTSLIQAIKDG-YRILPVFVFPPEQIDPEKNEWFSHPSVQF 74

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +  SL  + + L ++              ++E +         + + YN  Y +    RD
Sbjct: 75  MCESLNDLGRQLKEE---VDGKLHLFMGGNLETIKKIKEVVNFSAIAYNEDYSVYARERD 131

Query: 121 KLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
             +E+  + + V     +D  LLP     +H         P    L+Q   +
Sbjct: 132 GEIEEWAESNNVEIIKEEDYGLLPIKDAWHHPKDGPHKALPRSFHLLQAYPE 183


>gi|224002719|ref|XP_002291031.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972807|gb|EED91138.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 468

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 135/450 (30%), Gaps = 47/450 (10%)

Query: 16  NDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
            D+R  DN AL  A          +  V+   P       ++ R   F+   L  V   L
Sbjct: 3   RDVRTVDNWALLFAQSLAVQQKVPLRVVYALPP--PPSMALTVRHGTFLLDGLKVVANEL 60

Query: 73  SQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ---- 128
            +  + F     S+  +  + + ++C       L            R    E+ +     
Sbjct: 61  QEASVPFDILCPSSRSEVGKTIHTHCTDASHDALAVVCDMCPLRYPRQWTEEQAVPLLEG 120

Query: 129 HRVICKSFDDSVLLPPG------SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
             +     D   ++P         +    L+  K++  F     Q         +     
Sbjct: 121 DDIPLYQVDTHNIVPVWIASPKREVGARTLRP-KIHNVFGDYCCQFPKFQGNAHVKESGA 179

Query: 183 RLTGPVTPSNIPRFFDYPFQAID-PMFPIGEQNALHILRKFCKEKVY---YYVEQRDIPA 238
              G +   +   F +             G Q A+     FC    Y    +   R+ P 
Sbjct: 180 EGKGGLDWDDYESFLNMDHSVPHVGGMNAGHQVAMERFNNFCSSTQYGLKNFDSLRNDPN 239

Query: 239 IQG-TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            Q   S LSP+++ G +S    + RL  +   L       A      ++ RE   + + +
Sbjct: 240 HQSVCSNLSPWINHGHVS----FQRLALDIRALKKHTNGTAAYIEEGVVRRELSDNFVYY 295

Query: 298 YPSVCMGKPFIPWTEKI-------EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            P             +        +  ++ +  +  ++  T   + +AA  QL   G MH
Sbjct: 296 TPDGYDSLAGAADWARDSLTLHADDERENLYTWKELEKAETHDDLWNAAQLQLVREGGMH 355

Query: 351 NRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND----SV 403
             +RM  A                 +        DG+  +   G  W+    +D      
Sbjct: 356 GFMRMYWAKKVLEWTSSPAYALATAQYLNDRYAYDGNDPNGFVGVGWSIMGIHDMGWKER 415

Query: 404 PYF---RIFNPTIQGKRF--DPQGTFIRHW 428
           P F   R  N     ++F  DP   F+  +
Sbjct: 416 PIFGKIRYMNYAGCKRKFKIDP---FVARY 442


>gi|113955504|ref|YP_730566.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           CC9311]
 gi|113882855|gb|ABI47813.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           CC9311]
          Length = 468

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 143/404 (35%), Gaps = 39/404 (9%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
            R+      S+L  QK L  KG             + + L+        T    N     
Sbjct: 45  PRKLQLHQESMLAYQKHLELKGFSVFTLTPKQNQQTSDLLNQLVDSGYKTFYLVN----- 99

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
                D LL KR+++ +  +    +VL  P  +L     M + +   RK ++ N  Q   
Sbjct: 100 ---PIDDLLSKRVRNTLERRHCVLNVLPTP-MLLTPTEVMDEHFNGRRKPMMANFYQMQR 155

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPF--------QAIDPMFPIGEQNALHILRKFCKEK 226
           + L V       PV         +           +      P+  ++A   L  F +++
Sbjct: 156 KRLGVLIDDQGAPVGGRWSYDADNRKKLPKGINVPEEPSIDLPVDHRSAKQWLDTFLEQR 215

Query: 227 VYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +  +    D  +    +   S L+P L++G+L+P+Q  N+      +    P +    +L
Sbjct: 216 LSGFGTFEDAISSKHRVMWHSVLTPMLNLGLLTPQQVLNQTL-AVAETSEIPLNSLEGFL 274

Query: 283 NELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
            ++I WREF   +   +        F  +        D  +  A+ QG TG P ID A++
Sbjct: 275 RQIIGWREFMAAMYLRHGVTMRNSNFWNF-------DDRPIPDAFYQGTTGLPPIDDAIK 327

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAAS 397
           +    G+ H+  R++    ++            +FM   +D        +  G  Q+A  
Sbjct: 328 RALNTGYCHHIERLMLLGNIMLLCGFHPTRIYTWFMELFVDAYDWVMVPNIYGMSQFADG 387

Query: 398 TGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
               S PY    N   +   + P G     W    + +   +IH
Sbjct: 388 GIFTSKPYLSGSNYVRKMSDYKP-GE----WCGIWDGLFWSFIH 426


>gi|240256063|ref|NP_194259.4| DNA photolyase [Arabidopsis thaliana]
 gi|332659635|gb|AEE85035.1| DNA photolyase [Arabidopsis thaliana]
          Length = 692

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 113/342 (33%), Gaps = 46/342 (13%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            AT   S  +VW ++DLR+ D+  L AA  +    VI +++       ++          
Sbjct: 29  SATNEGSTAVVWFKHDLRVDDHPGLLAASKH--RAVIPLYVLDRRILSRYTTDT--LELA 84

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  ++K+L ++G          + ++   ++    + R   +F   + E +      
Sbjct: 85  IIALEDLRKTLKKQGSNLMLR----YGNAENVIEDLVKEVRAPFVFVEEEVEYHLCEVLD 140

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++ +L+   +  S +   ++   +    +  +        ++  +        +LPVPA
Sbjct: 141 AVKNKLE--GVSLSGESPRIVAWRTPFYESQNLTD----LPQSWEEFKKLKLPLTLPVPA 194

Query: 182 IRLTGP---VTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRD 235
            + + P   +   ++P   D      + ++ I     + A     +   E++    E   
Sbjct: 195 AKFSSPGSELQWGSVPTLDDLKDYLKESLWEIENSWREMAQASAERVLMERLGNLKESSM 254

Query: 236 IPAIQG------------TSQ--------------LSPYLSIGVLSPRQCWNRLKEEFVD 269
            P + G            TS+              L+ YL     + R  W  +     D
Sbjct: 255 EPIVDGSLGKKVDNSVFVTSKRDTVGGGNEVVLNALAGYLRYLEGTSRDDWQEVHARLRD 314

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
              +P +  F     ++           Y ++   K      
Sbjct: 315 AETRPGASFFKLFGPVLCLGIVSRRSVHYEAIEYEKERNAGF 356


>gi|218514415|ref|ZP_03511255.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli 8C-3]
          Length = 105

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
           A  A    ++W R DLR+ DNKAL AA H S   +I+++I  PE      + A QS +++
Sbjct: 2   AKDAAKPVILWFRKDLRLDDNKALNAA-HFSGRPIISLYIREPEAAGTGPLGAAQSWWLH 60

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
            SL  +  SL ++    +        +++  L S   Q     +F+
Sbjct: 61  HSLEALDGSLRKR----RGRALVASGEALGVLRSLIRQSDADAVFW 102


>gi|218198693|gb|EEC81120.1| hypothetical protein OsI_23997 [Oryza sativa Indica Group]
          Length = 133

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 45/65 (69%)

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
           +P+IDA M++L   G+M NR R I  SFLV+D+ +DWR+G E+F + LLD D ASN G W
Sbjct: 69  YPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGNW 128

Query: 393 QWAAS 397
            + A 
Sbjct: 129 TYGAG 133


>gi|162454692|ref|YP_001617059.1| hypothetical protein sce6412 [Sorangium cellulosum 'So ce 56']
 gi|161165274|emb|CAN96579.1| phr [Sorangium cellulosum 'So ce 56']
          Length = 508

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 136/468 (29%), Gaps = 66/468 (14%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M         L W+    R   N  L  A   S A    + +    +      S R   F
Sbjct: 17  MPVREGGDYVLYWMIASRRTRYNFGLERAIAWSMALDRPLVVLEALRCGYRWASDRIHRF 76

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           +   +    + L+  G+    +           L +   +     +     Y    + R 
Sbjct: 77  VIDGMADNARRLAAAGVAHHPYVEPAEGAGKGLLGALAAR---ACVVVTDDYPCFFLPR- 132

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKAL-------------IQ 167
            ++    +   +     DS  L P    +      + +  F + +             ++
Sbjct: 133 -MVASAARQAPVRLEQVDSNGLLPMRAADRVFTTARSFRIFWQRVIGEHLGAQPAVDPLK 191

Query: 168 NLVQADLRSLPVPAIRLTGPVTPS----NIPRFFDYPFQAIDPMFP--IGEQNALHILRK 221
                    LP    R     +P+    +       P     P  P   G + A   L +
Sbjct: 192 RAKLRPAAPLPRAIARRWPAASPALLGGDPAALSALPIDHTVPPAPCRGGPEAAGKALAR 251

Query: 222 FCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV----------DLL 271
           F  +++  Y+E+RD P    TS LSPYL  G L+  + +  +               D +
Sbjct: 252 FVADRLPRYLEERDHPDAGATSGLSPYLHFGHLAAHEVFAAVARREAFRVERLGRPGDGV 311

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE----KIEWNKDSHLLQA-- 325
            +P      +       E +   +  +  +      +  +E    +  W +D    ++  
Sbjct: 312 KRPSGSREGFWGMSASAEAFLEQLVTWRELGFNAFALGASEGDGPRPSWKRDPTEYESLP 371

Query: 326 -----------------------WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                                     G T   I +A+  +L   G MHN LRM+    ++
Sbjct: 372 DWALATLEKHARDRRPRVYPIEALAAGATYDRIWNASQVELLREGRMHNYLRMLWGKKIL 431

Query: 363 KDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
           +         E   E      LDG   ++  G  W     + +    R
Sbjct: 432 EWSRTPREALEIMIELNDRYALDGRDPNSTSGIFWVLGRYDRAWGPER 479


>gi|70934909|ref|XP_738613.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase) [Plasmodium chabaudi chabaudi]
 gi|56514975|emb|CAH79340.1| deoxyribodipyrimidine photolyase (photoreactivating enzyme, DNA
           photolyase), putative [Plasmodium chabaudi chabaudi]
          Length = 368

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 124/340 (36%), Gaps = 20/340 (5%)

Query: 36  KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLD 95
            +   +I   EQ+ +     R  +     L  +++   +  I F        D+ +E+L 
Sbjct: 7   LLACTYINRKEQFTE-----RHINIKLKVLKNLEEEFKKLNIPFYVIPIFMIDEFMEFLR 61

Query: 96  SYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQM 154
                Q +  +  +    E  +   + L+    + ++     D   ++P           
Sbjct: 62  I----QEIKTVVCDFHPLEYQKQFVENLVHMSNKKKIKVLQVDSHNIIPLWMTSKMEESS 117

Query: 155 YKVYTPFRKALIQN-LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ-AIDPMFPIGE 212
            +   P  +A + + L++          I+   P    ++ +        ++   F   E
Sbjct: 118 TRTIKPKIQAHLSSFLIEYIKLERFDQTIKYPEPFDIESLYKKLTVNNSCSVISDFVCTE 177

Query: 213 QNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
           + A  +L  FCK K+  Y  +R+ P     + L PY+++G++S ++C   + +  +    
Sbjct: 178 KKARDVLEDFCKNKLDKYGVKRNDPNYDTINLLMPYINLGIISSQRCILEVNKYALQFPS 237

Query: 273 KPKSGAFSWLNE--LIWREFYRHLMAFYPSVCMGKPFIPW----TEKIEWNKDSHLLQA- 325
              S    + N+  LI +E   +   +  +         W     +K E +K SHL    
Sbjct: 238 IHTSSGKEYFNDDLLIKKELADNFCYYNKNYDNFNGAKDWAKESLKKHELDKRSHLYDYE 297

Query: 326 -WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
            ++   T   I +    QL   G +H  LRM  A  ++  
Sbjct: 298 DFRNARTHNDIWNCCQLQLVNEGTIHEFLRMYWAKKILNW 337


>gi|325285638|ref|YP_004261428.1| deoxyribodipyrimidine photolyase-like protein [Cellulophaga lytica
           DSM 7489]
 gi|324321092|gb|ADY28557.1| deoxyribodipyrimidine photolyase-related protein [Cellulophaga
           lytica DSM 7489]
          Length = 494

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 112/294 (38%), Gaps = 22/294 (7%)

Query: 147 ILNHALQMYKV-YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF--DYPFQA 203
           +++   +     +T   +   +   +    S+  P +          + + F  +     
Sbjct: 160 LIDENGEPEGGKWTYDAENRKKYPAKKTPPSIQFPDVDEYYKEAKEYVNKNFADNLGKLT 219

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQC 259
              ++P   +     L++F  ++   +    D    + +    S L+P L++G+++P++ 
Sbjct: 220 EQSLYPTSFKATEDWLQQFFDQRFMEFGVYEDAIVAENSILNHSVLTPMLNVGLITPKEI 279

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
            ++  + +      P +    ++ ++I WREF R +     +      +  +T KI    
Sbjct: 280 IDKALD-YAKTNNVPINSTEGFVRQIIGWREFIRGMYITRGAEERTTNYWKFTRKIP--- 335

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
                 ++  G TG P ID  +++L   G+ H+  R++  S  +     +     ++FM 
Sbjct: 336 -----ASFYNGTTGIPPIDQTIKKLLQTGYCHHIERLMVLSNFMLLCEFNPDEVYQWFME 390

Query: 379 QLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
             +D        +  G  Q+A      + PY    N  I+   +  +G +   W
Sbjct: 391 LFIDSYDWVMVPNVYGMSQFADGGLMATKPYISGSNYVIKMSNY-KKGEWQNIW 443


>gi|4454017|emb|CAA23070.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269380|emb|CAB81340.1| hypothetical protein [Arabidopsis thaliana]
          Length = 581

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 94/247 (38%), Gaps = 20/247 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            AT   S  +VW ++DLR+ D+  L AA  +    VI +++       ++     +   I
Sbjct: 29  SATNEGSTAVVWFKHDLRVDDHPGLLAASKH--RAVIPLYVLDRRILSRYTTDTLELAII 86

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  ++K+L ++G          + ++   ++    + R   +F   + E +      
Sbjct: 87  --ALEDLRKTLKKQGSNLMLR----YGNAENVIEDLVKEVRAPFVFVEEEVEYHLCEVLD 140

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++ +L+   +  S +   ++   +    +  +        ++  +        +LPVPA
Sbjct: 141 AVKNKLE--GVSLSGESPRIVAWRTPFYESQNLTD----LPQSWEEFKKLKLPLTLPVPA 194

Query: 182 IRLTGP---VTPSNIPRFFDYPFQAIDPMFPI---GEQNALHILRKFCKEKVYYYVEQRD 235
            + + P   +   ++P   D      + ++ I     + A     +   E++    E   
Sbjct: 195 AKFSSPGSELQWGSVPTLDDLKDYLKESLWEIENSWREMAQASAERVLMERLGNLKESSM 254

Query: 236 IPAIQGT 242
            P + G+
Sbjct: 255 EPIVDGS 261


>gi|262277789|ref|ZP_06055582.1| photolyase protein family protein [alpha proteobacterium HIMB114]
 gi|262224892|gb|EEY75351.1| photolyase protein family protein [alpha proteobacterium HIMB114]
          Length = 494

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 125/362 (34%), Gaps = 44/362 (12%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNF---DDSIEWLDSYCLQQRVTKL-FYNRQY 112
           +  F  +S+   +  L Q G    YH+  +    DD ++ L +    +++  + F+  + 
Sbjct: 44  KITFFLSSMRSFKDELEQVGYKVIYHKIEDKEFKDDYVKKLANVIKNKKIKNVNFFEIED 103

Query: 113 EINEVRRDKLLEKRLQHRVICK-----SFDDSVLLPPGS-------------------IL 148
           +  E +    L+K      I K     S  D  +   G                    ++
Sbjct: 104 KPFEKKIVSYLKKEKVDYKILKTPMFLSSRDDFISYLGKSKKPFMANFYKIQRTKFNILM 163

Query: 149 NHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
           N           F     + L +     +         T  +      +F  +P      
Sbjct: 164 NKDGSPKGGKWSFDSENRKKLPKDIKLPKQPIFKETEHTKKLKKIINEKFPKHPGDTNQF 223

Query: 207 MFPIGEQNALHILRKFCKEK---VYYYVEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNR 262
                 ++A  +L  F K+K      Y +  D    I   S LSP+++ G ++P++  + 
Sbjct: 224 WIGTTRKDAKLVLDNFLKDKLKLFGDYEDAVDQRDNILFHSALSPFINNGSITPQEILDE 283

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           L +    + I    G       + WREF R +   +        F         N  + +
Sbjct: 284 LTKFEKKVSINSYEGY--LRQVIGWREFMRGIYQNFDDKMQKSNFF--------NHKNKM 333

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
             +W +G TG   +D A++      W H+  R++  S ++    ++ R   ++FM   +D
Sbjct: 334 KNSWYEGTTGLDPLDHAIKNAKDYAWSHHIERLMILSNIMNLCEIEPRQVYKWFMEMFMD 393

Query: 383 GD 384
             
Sbjct: 394 SS 395


>gi|157412840|ref|YP_001483706.1| hypothetical protein P9215_05041 [Prochlorococcus marinus str. MIT
           9215]
 gi|157387415|gb|ABV50120.1| Uncharacterized deoxyribodipyrimidine photolyase-like protein
           [Prochlorococcus marinus str. MIT 9215]
          Length = 496

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 109/290 (37%), Gaps = 27/290 (9%)

Query: 141 LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200
           L+ P          +      RK L + +   D   L      +    + +N    FD  
Sbjct: 162 LVNPDD--TPEGGKWSFDEMNRKKLPKKINIPDTPKLQKNKFVVNAERSLAN----FDIE 215

Query: 201 F--QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVL 254
           F  ++ + ++P   + A   L  F K K + + +  D  A + +    S LSP L+ G+L
Sbjct: 216 FIGESHNFLYPTNFEEADQWLNDFFKHKFFLFGDYEDAIAKENSFLWHSLLSPLLNSGLL 275

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK 313
           +P    N+    F      P +    ++ ++I WREF   +   Y +      F      
Sbjct: 276 TPDVVVNKAL-LFAKNNNVPINSLEGFIRQIIGWREFICLVYKKYGTKMRNSNF------ 328

Query: 314 IEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
             WN +D  + +++ QG TG   +D  ++ +   G+ H+  R++     +    +     
Sbjct: 329 --WNFEDKPIPKSFYQGNTGIEPVDVVIKNIIKFGYCHHIERLMIVGNFMLLCRIHPNQV 386

Query: 373 EEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            ++FM   +D        +  G  Q++      + PY    N   +   F
Sbjct: 387 YKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYISSSNYVKKMSNF 436


>gi|254525656|ref|ZP_05137708.1| photolyase protein family protein [Prochlorococcus marinus str. MIT
           9202]
 gi|221537080|gb|EEE39533.1| photolyase protein family protein [Prochlorococcus marinus str. MIT
           9202]
          Length = 496

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 109/290 (37%), Gaps = 27/290 (9%)

Query: 141 LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200
           L+ P          +      RK L + +   D   L      +    + +N    FD  
Sbjct: 162 LVNPDD--TPEGGKWSFDEMNRKKLPKKINIPDTPKLQKNKFVVNAERSLAN----FDIE 215

Query: 201 F--QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVL 254
           F  ++ + ++P   + A   L  F K + + + +  D  + + +    S LSP L+ G+L
Sbjct: 216 FIGESNNFLYPTNFEEADAWLNDFFKHRFFLFGDYEDSISKENSFLWHSLLSPLLNSGLL 275

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK 313
           +P    N+    F      P +    ++ ++I WREF   +   Y +      F      
Sbjct: 276 TPDVVVNKAL-LFAKNNNVPINSLEGFIRQIIGWREFICLVYKKYGTKMRNSNF------ 328

Query: 314 IEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
             WN +D  + +++ QG TG   +D  ++ +   G+ H+  R++     +    +     
Sbjct: 329 --WNFEDKPIPKSFYQGNTGIEPVDVVIKNIIKFGYCHHIERLMIVGNFMLLCRIHPNQV 386

Query: 373 EEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            ++FM   +D        +  G  Q++      + PY    N   +   F
Sbjct: 387 YKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYISSSNYVKKMSNF 436


>gi|254251923|ref|ZP_04945241.1| Deoxyribodipyrimidine photolyase [Burkholderia dolosa AUO158]
 gi|124894532|gb|EAY68412.1| Deoxyribodipyrimidine photolyase [Burkholderia dolosa AUO158]
          Length = 93

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 397 STGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW----LDKNDL 452
             G D+ PYFR+FNP  QG++  P G  +R W+PEL  V    +HA        L    +
Sbjct: 3   GCGADAAPYFRVFNPVAQGRKLGPSGAHVRRWVPELARVDDAAVHARWDASPLTLAAAGV 62

Query: 453 SLN--YPLPIVDHKKACHHTLNQYYAAKKQS 481
            L   YP P+VDH  A    L+ +    K+ 
Sbjct: 63  RLGVVYPAPLVDHDAARRRALDAFATLPKRG 93


>gi|165924275|ref|ZP_02220107.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Coxiella burnetii
           RSA 334]
 gi|165916280|gb|EDR34884.1| deoxyribodipyrimidine photo-lyase (DNA
           photolyase)(Photoreactivating enzyme) [Coxiella burnetii
           RSA 334]
          Length = 341

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 94/301 (31%), Gaps = 24/301 (7%)

Query: 122 LLEKRLQHRVICKS------FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
            ++KR +  V+ +S       D   ++P     +          P  + L+   +     
Sbjct: 28  RIKKRWKESVLHQSNSPIYEVDAHNIVPCWLASDKREYGAYTIRPKIQRLLPRFLTDFPE 87

Query: 176 SLPVPAIRLTGPVTPSNIPRFF----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
            +  P           +I        D   + I      GEQ A+ +   F   ++  Y 
Sbjct: 88  LVKHPYATAIDSENALDIIALLSQIKDRSVEEIK-WLKPGEQAAMQVFADFETHRLQSYP 146

Query: 232 EQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
             R+ P + G S LSPY   G L+P++    + +   D   K           +I RE  
Sbjct: 147 ADRNNPCMNGQSNLSPYFHFGQLAPQRVAWDIWQSDTDQESKES----YLEELIIRRELS 202

Query: 292 RHLMAFYPSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            +   +         F  W        +++       L   +   T   + +   R+L  
Sbjct: 203 DNYCYYTADYDHTNAFPDWARKSLAAHRLDPRLSVANLHILENASTEDELWNGCQRELTG 262

Query: 346 IGWMHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
            G +H  LRM  A  +++                    LDG   +   G  W+    +D 
Sbjct: 263 WGKLHGYLRMYWAKKILEWSPSPEEAMANAIFLNDKYSLDGRDPNGYAGIAWSIGGVHDR 322

Query: 403 V 403
            
Sbjct: 323 A 323


>gi|92429548|gb|ABD93518.2| DNA photolyase protein [Solanum peruvianum]
          Length = 150

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 54/147 (36%), Gaps = 10/147 (6%)

Query: 37  VIAVFIATPEQWRQHG-----ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI 91
           V+AV+   P  + +           ++ F+  S+  ++K+L  +G               
Sbjct: 5   VLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVR----IGKPE 60

Query: 92  EWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNH 150
             L           ++ +R+   +EV+ +  ++  ++   +  K F  S L     +   
Sbjct: 61  TVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFK 120

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSL 177
             QM   Y  FR+ +    V+  + +L
Sbjct: 121 LEQMPTNYGGFREKVQGLEVRKTIEAL 147


>gi|296084158|emb|CBI24546.3| unnamed protein product [Vitis vinifera]
          Length = 704

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 83/216 (38%), Gaps = 11/216 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SV ++W ++DLRI D+  L AA       VI +++       +   S      +  ++  
Sbjct: 44  SVAVLWFKHDLRIDDHPGLVAAASRHRT-VIPLYVFDRRILSR--FSDEMLELVLVAMED 100

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++SL  +G          F  + + +     + + T +F   + E    +    +++ L
Sbjct: 101 LRESLKDQGSNLMIR----FGSAEKTIREIVKEVKATTIFAEEEVEHELRKMIDTVQETL 156

Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               + +   + V+   P   +     +  ++  F+K  +          LP   I L  
Sbjct: 157 ATAPLLERSPEVVMWHTPFYDIKDLKYLPPLHHDFKKLQLPITSPLGPPRLPSVEIGLDW 216

Query: 187 PVTPS--NIPRFFD-YPFQAIDPMFPIGEQNALHIL 219
              PS  ++ +F +  P ++ +    I E  A  +L
Sbjct: 217 GPVPSLADLKQFVNGNPSKSKEDWTSIKETIAEKML 252


>gi|307101791|gb|EFN50420.1| hypothetical protein CHLNCDRAFT_29124 [Chlorella variabilis]
          Length = 92

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           R + R+L   +P     +  +     + W  D  L +AW+QG TG+P++DAAMR++   G
Sbjct: 1   RRYSRYLSFHFP-FTHERSLLEHLRAVPWRFDQRLFKAWRQGRTGYPLVDAAMREVWGTG 59

Query: 348 WMHNRLRMITASFLVKDLLVDWR 370
           WMHNR+R++ ASF+VK+LL+ W+
Sbjct: 60  WMHNRMRVVAASFMVKNLLLPWQ 82


>gi|225455683|ref|XP_002265202.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 718

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 83/216 (38%), Gaps = 11/216 (5%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           SV ++W ++DLRI D+  L AA       VI +++       +   S      +  ++  
Sbjct: 58  SVAVLWFKHDLRIDDHPGLVAAASRHRT-VIPLYVFDRRILSR--FSDEMLELVLVAMED 114

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           +++SL  +G          F  + + +     + + T +F   + E    +    +++ L
Sbjct: 115 LRESLKDQGSNLMIR----FGSAEKTIREIVKEVKATTIFAEEEVEHELRKMIDTVQETL 170

Query: 128 QHRVICKSFDDSVLLP-PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
               + +   + V+   P   +     +  ++  F+K  +          LP   I L  
Sbjct: 171 ATAPLLERSPEVVMWHTPFYDIKDLKYLPPLHHDFKKLQLPITSPLGPPRLPSVEIGLDW 230

Query: 187 PVTPS--NIPRFFD-YPFQAIDPMFPIGEQNALHIL 219
              PS  ++ +F +  P ++ +    I E  A  +L
Sbjct: 231 GPVPSLADLKQFVNGNPSKSKEDWTSIKETIAEKML 266


>gi|47223394|emb|CAG04255.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 726

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 13/187 (6%)

Query: 26  LYAACHNSDAKVIAVFIATPEQWRQ------HGISARQSHFIYASLLQVQKSLSQKGIVF 79
           L+     +   ++ ++   P  +              +  F+  S+  ++K+L  +G   
Sbjct: 543 LFYWAQRNAEHIVPLYCFDPRHYAGTYHYSLPKTGPFRLRFLLESIRDLRKTLLNQGSNL 602

Query: 80  QYHQCSNFDDSIEWLDSYCLQQR-VTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFD 137
              +        E + S   Q   V+ + +  +    E+  +K ++      +V   +  
Sbjct: 603 IVRRGKPE----EVVASLIKQLGSVSTVAFQEEVTSEELNVEKRVKDVCAQLKVKVHTCW 658

Query: 138 DSVLLPPGSILNHAL-QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
            S L     +  H + ++  VYT FRKA+        +   P     L   +    IP  
Sbjct: 659 GSTLYHRDDLPFHHISRLPDVYTQFRKAVESQSRVRPVLPSPERLKPLPQGLEEGAIPTA 718

Query: 197 FDYPFQA 203
            D   + 
Sbjct: 719 EDLEQKG 725


>gi|123968015|ref|YP_001008873.1| hypothetical protein A9601_04781 [Prochlorococcus marinus str.
           AS9601]
 gi|123198125|gb|ABM69766.1| Uncharacterized deoxyribodipyrimidine photolyase-like protein
           [Prochlorococcus marinus str. AS9601]
          Length = 496

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 104/284 (36%), Gaps = 21/284 (7%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF--QAI 204
           ++N           F +   + L +           +    V        FD  F  ++ 
Sbjct: 162 LVNSDDTPEGGKWSFDEMNRKKLPKKINIPDTPKLQKNKFVVNAERSLANFDIEFIGESN 221

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCW 260
           + ++P   + A   L  F K K + + +  D  + + +    S LSP L+ G+L+P    
Sbjct: 222 NFLYPTNFEEADEWLNDFFKHKFFLFGDYEDAISKENSFLWHSLLSPLLNSGLLTPDVVV 281

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-K 318
           N+    F      P +    ++ ++I WREF   +   Y +      F        WN +
Sbjct: 282 NKAL-LFAKNNNVPINSLEGFIRQIIGWREFICLVYKKYGTKMRNSNF--------WNFE 332

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D  + +++ QG TG   +D  ++ +   G+ H+  R++     +    +      ++FM 
Sbjct: 333 DKPIPKSFYQGNTGIEPVDVVIKNIIKFGYCHHIERLMIVGNFMLLCRIHPNQVYKWFME 392

Query: 379 QLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
             +D        +  G  Q++      + PY    N   +   F
Sbjct: 393 MFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYISSSNYVKKMSNF 436


>gi|260787134|ref|XP_002588610.1| hypothetical protein BRAFLDRAFT_131753 [Branchiostoma floridae]
 gi|229273775|gb|EEN44621.1| hypothetical protein BRAFLDRAFT_131753 [Branchiostoma floridae]
          Length = 521

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI--SARQSHFIYASLLQ 67
            + W R  LR  DN +L  A   S   V  VF+   +  +   I   A Q  F+   L  
Sbjct: 68  TIHWFRKGLRFHDNPSLLHALRTS-RHVYPVFVMDLDFMKDFKIRSGANQWRFVIECLQD 126

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL 122
           +   L   G+     +     ++  +   +  +  +T+L ++ + E     RD  
Sbjct: 127 LDTRLRAYGLRLFVARG----NAEAFFAEHFRKWNITQLTHDVETEHYHRFRDAA 177


>gi|327342158|gb|AEA50866.1| cry2-2 [Populus tremula]
          Length = 226

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 12/81 (14%)

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSW------LDKNDLSLNYPLPIVDHKKA 466
           IQG +FDP+G ++R WLPEL  +P ++IH P             +L +NYP PI+D   A
Sbjct: 1   IQGSKFDPEGEYVRRWLPELARMPAEWIHHPWDASIAVLKAAGVELGINYPKPIIDIDLA 60

Query: 467 CHHTLNQ------YYAAKKQS 481
               +          AA + S
Sbjct: 61  RERLMEAIFKMWEMEAAARAS 81


>gi|72382565|ref|YP_291920.1| hypothetical protein PMN2A_0726 [Prochlorococcus marinus str.
           NATL2A]
 gi|72002415|gb|AAZ58217.1| conserved hypothetical protein [Prochlorococcus marinus str.
           NATL2A]
          Length = 496

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 144/413 (34%), Gaps = 58/413 (14%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDS 96
           +F     QW+Q     ++  F  A++   ++ L  +G   I  Q+ + S  +D++ +L  
Sbjct: 32  LFFGCDSQWQQ-KFHCQKIIFHKATMDSYEEDLKSQGFNVIYLQHKRESRTEDNLNYLLE 90

Query: 97  YCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQHRVICK-SFDDSVLLPPG---SILN-- 149
                 +T       YE  +   +K ++   L++ +  +   +D  L  P     ILN  
Sbjct: 91  KGFNYFIT-------YEAFDWSLEKRIKDFSLKNNIKLEIRKNDMFLTCPDISEEILNQK 143

Query: 150 ---------------------HALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTG 186
                                           F     + L       +   +   RL  
Sbjct: 144 KIYGMQKFYKIQRKSLNILIEKDGSPTGGAWNFDNMNRKKLPNSIEVPKIPTIKTNRLLN 203

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GT 242
                    + DY  +  +  +P+  ++A   L  F  E+   + +  D           
Sbjct: 204 KAKKEVSTNYKDYYGRIANFNYPLSHKDAEEWLDNFLIERFNLFGDYEDAIHSNHRTLWH 263

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSP ++ G+L+PRQ  ++  E +    I   +    ++ ++I    +  LM    S+ 
Sbjct: 264 SVLSPLINSGLLTPRQIIDKSWEFYQSNNI-GINSYEGFVRQIIGWREFILLMYKRNSLE 322

Query: 303 MGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           +            W+ +D  +  ++  G TG   +D ++R +   G+ H+  R++    L
Sbjct: 323 LRNGNF-------WDFEDKPIPLSFYTGQTGIRPLDDSIRNILETGYAHHIERLMIVGNL 375

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFN 410
           +           ++FM   +D        +  G  Q++      + PY    N
Sbjct: 376 MLLCRFHPNQVYKWFMELFIDSYDWVMVPNVYGMSQFSDGGLFTTKPYISGSN 428


>gi|326526437|dbj|BAJ97235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 703

 Score = 86.6 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A +     +VW ++DLR+ D+  L AAC      V+ +++         G S  +   +
Sbjct: 33  SAVSDGGAAVVWFKHDLRVDDHPGLVAACAEPRRPVVPLYVFDSRILA--GYSDTRLELL 90

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  ++ +L  +             ++ + +     + +V  ++   + E +      
Sbjct: 91  LFALKDLKLALKSQRSDLLVG----LGNAEDAVLKLANEVQVGVIYTEEEVEHSVCSVLA 146

Query: 122 LLEKRLQHR 130
            +E  L + 
Sbjct: 147 NVESSLSNG 155


>gi|326524207|dbj|BAJ97114.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 703

 Score = 86.6 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            A +     +VW ++DLR+ D+  L AAC      V+ +++         G S  +   +
Sbjct: 33  SAVSDGGAAVVWFKHDLRVDDHPGLVAACAEPRRPVVPLYVFDSRILA--GYSDTRLELL 90

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  ++ +L  +             ++ + +     + +V  ++   + E +      
Sbjct: 91  LFALKDLKLALKSQRSDLLVG----LGNAEDAVLKLANEVQVGVIYTEEEVEHSVCSVLA 146

Query: 122 LLEKRLQHR 130
            +E  L + 
Sbjct: 147 NVESSLSNG 155


>gi|302850180|ref|XP_002956618.1| photolyase [Volvox carteri f. nagariensis]
 gi|300258145|gb|EFJ42385.1| photolyase [Volvox carteri f. nagariensis]
          Length = 667

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 79/417 (18%), Positives = 136/417 (32%), Gaps = 30/417 (7%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWR-QHGISARQSHFIYASLLQVQ 69
           L W++  +R  +N AL  A   ++   + + IA   Q   Q  I+ R+  F+   L   Q
Sbjct: 226 LYWMKTAVRGHENPALDTARAAAERLQLPLRIAAFVQPTCQPYINHRRVKFLLEGLRDAQ 285

Query: 70  KSLS----QKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE- 124
           + L        +      C+      E       +    +   N             +E 
Sbjct: 286 RELRNQGLDLLVHVYGTTCAGLGPGDEVRSDGSGRGGCPEYDNNDDGGGGGQGGLGRVEV 345

Query: 125 -----KRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
                + L   ++ +++D +      +      ++  +Y        Q       R+   
Sbjct: 346 SGPGWEALLAALVGRAYDKAHAYRSATEALRRHRLRAMYGTSAFPSAQMSPSPPQRTSRA 405

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI-LRKFCKEKVYYYVEQRDIPA 238
            A       TP       +    A         +      +R +   +++          
Sbjct: 406 AAPGPAPADTPRGRLFLKEDEAAAAAAAHTNKFKQGGSCPIRVYANVQMWS-------VQ 458

Query: 239 IQGTSQLSPYLSIGVLSP-RQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA 296
             GTS++SPYL  G++SP R       E   +      SGA  +L+EL+ WRE       
Sbjct: 459 RSGTSRMSPYLHWGMVSPFRSAERGGYEIAREAAASGGSGAGKFLDELLVWRELSYSFCF 518

Query: 297 FYPSVCMGKPFIPWTEKIE---WNKDS---HLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  S       +P   +        D      LQ  + G TG P  DAA  QL++ G +H
Sbjct: 519 YRYSQLQSLSVLPRWAQDTLAAHATDPRVVKTLQQLELGATGDPFWDAAQCQLSSYGELH 578

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYF---MSQLLDGDLASNNGGWQWAASTGNDSVP 404
           N +RM     L+       R  +          LDG   ++ GG  W     +    
Sbjct: 579 NNVRMTWGKSLLGWCPTPQRALDVALHLNHRYALDGCDPASYGGVLWCFGLFDGPRE 635


>gi|148239607|ref|YP_001224994.1| deoxyribodipyrimidine photolyase-like protein protein
           [Synechococcus sp. WH 7803]
 gi|147848146|emb|CAK23697.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           WH 7803]
          Length = 495

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 145/442 (32%), Gaps = 63/442 (14%)

Query: 21  TDNKALY--AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIV 78
            D+ AL+   A    +  +  +F   P+   Q  +  ++     AS+    ++L  +G  
Sbjct: 13  ADHPALHKGRAVALIEDPL--LFGTDPQWPIQ--VHRQRLLLHRASMTAYAETLRAQGYT 68

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-----RVIC 133
             Y +     ++ E L +      V+    +          D LLEKRL+          
Sbjct: 69  VFYRRHHQASNTEEHLQALRASGFVSFYLAD--------PVDDLLEKRLRQFVARSGGDL 120

Query: 134 KSFDDSVLLPP---------------------------GSILNHALQMYKVYTPFRKALI 166
           +  D  +LL P                           G +L+           F     
Sbjct: 121 RILDSPMLLTPASMVEEHFAGGRKPFMAKFYEHQRRRMGLLLDDNGGPLGGQWSFDADNR 180

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF--PIGEQNALHILRKFCK 224
           + L +                            PF      F  PI  ++A   L+ F  
Sbjct: 181 KKLPKGISVPSEPCHHGDAEIDQARRELETETLPFIGNWDFFSYPIRHEDADRWLQIFLD 240

Query: 225 EKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
           ++   +    D  + Q      S L+P L++G+L+P+Q  +R  E   D  I P +    
Sbjct: 241 QRFRDFGAYEDAISTQHRVMWHSVLTPMLNVGLLTPQQVIDRTLERAADGDI-PLNSLEG 299

Query: 281 WLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           ++ +++    +  +M     V M K            +D  +  A+  G TG P +D A+
Sbjct: 300 FIRQIVGWREFMAVMYRRHGVAMRKS------NFWEFEDRPIPDAFYTGTTGLPPVDDAI 353

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAA 396
                 G+ H+  R++    ++       +   ++FM   +D        +  G  Q+A 
Sbjct: 354 HHALAHGYCHHIERLMLLGNIMLLCGFHPQRVYQWFMELFVDAYDWVMVPNVFGMSQFAD 413

Query: 397 STGNDSVPYFRIFNPTIQGKRF 418
                + PY    N   +   +
Sbjct: 414 GGLFTTKPYLSGSNYVRKMSDY 435


>gi|255539721|ref|XP_002510925.1| hydrolase, putative [Ricinus communis]
 gi|223550040|gb|EEF51527.1| hydrolase, putative [Ricinus communis]
          Length = 691

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 104/306 (33%), Gaps = 33/306 (10%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             S  ++W + DLR+ D+  L  A ++S + ++ +++       +   S      +  +L
Sbjct: 41  RTSSAILWFKQDLRVDDHFGLLQASNHSPSSLLPLYVFDHIILSR--YSDEMLEIVLFAL 98

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK 125
             ++ SL ++G          F  +   +     +   T +F   + E +     +++++
Sbjct: 99  QDLRNSLKEQGSNLMIR----FGSAEGVIRDLVQEVEATVVFAEEEVEYHLRSTVEIVKQ 154

Query: 126 RLQHRVICKSFDDSVLL--PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            L         +  ++L   P   + +   +   +  F+K  +         +LP   + 
Sbjct: 155 NLTKSQPHLDVNPKIVLWQTPFYDIKNLKDLPASHDHFKKLQLPVTSPILPPTLPATPME 214

Query: 184 LTGPVTP--SNIPRFFDYPFQAIDPMFP-----IGEQNALHILRKF-------------- 222
           L     P    + +F +     +   +        E    + L KF              
Sbjct: 215 LDWGSMPTLDELKKFVNESPFKLKESWSLIKEMPTETILHNKLSKFRGTDVNLNFNQSQR 274

Query: 223 CKEKVYYYVEQRDIPAIQGTSQ----LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
            + +   +V QR      GT++    L+ YL     + R  W  + E   +   +  +  
Sbjct: 275 KRVENSVFVTQRQNFVGGGTNKVLNALAAYLRYLEGTARDDWQEVHERLRNAESRDGASF 334

Query: 279 FSWLNE 284
           F+    
Sbjct: 335 FTLFGP 340


>gi|126695785|ref|YP_001090671.1| hypothetical protein P9301_04471 [Prochlorococcus marinus str. MIT
           9301]
 gi|126542828|gb|ABO17070.1| Uncharacterized deoxyribodipyrimidine photolyase-like protein
           [Prochlorococcus marinus str. MIT 9301]
          Length = 496

 Score = 86.6 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 108/290 (37%), Gaps = 27/290 (9%)

Query: 141 LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200
           L+ P          +      RK L + +   D   L      +    + +N    FD  
Sbjct: 162 LVNPDD--TPEGGKWSFDEMNRKKLPKKINIPDTPKLQKNKFVVNAERSLAN----FDIE 215

Query: 201 F--QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVL 254
           F  ++ + ++P   + A   L  F K + + + +  D  + + +    S LSP L+ G+L
Sbjct: 216 FIGESNNFLYPTNFEEADEWLNDFFKHRFFLFGDYEDAISKENSFLWHSLLSPLLNSGLL 275

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK 313
           +P    N+    F      P +    ++ ++I WREF   +   Y +      F      
Sbjct: 276 TPDVVVNKAL-LFAKNNNVPINSLEGFIRQIIGWREFICLVYKKYGTKMRNSNF------ 328

Query: 314 IEWNKDSH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
             WN +   + +++ QG TG   +D  ++ +   G+ H+  R++     +    +     
Sbjct: 329 --WNFEEKPIPKSFYQGNTGIEPVDVVIKNIIKFGYCHHIERLMIVGNFMLLCRIHPNQV 386

Query: 373 EEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            ++FM   +D        +  G  Q++      + PY    N   +   F
Sbjct: 387 YKWFMEMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYISSSNYVKKMSNF 436


>gi|319993041|emb|CBY94069.1| cryptochrome [Fagus sylvatica]
          Length = 126

 Score = 86.6 bits (213), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 9/83 (10%)

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNY 456
             + RI NP  QG +FDP G ++R WLPEL  +PT++IH P +  +        +L  NY
Sbjct: 1   REFDRIDNPQFQGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLHAAGIELGSNY 60

Query: 457 PLPIV--DHKKAC-HHTLNQYYA 476
           PLPIV  D  KA     L++ + 
Sbjct: 61  PLPIVEIDAAKARLQQALSEMWQ 83


>gi|183221861|ref|YP_001839857.1| putative deoxyribodipyrimidine photo-lyase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911933|ref|YP_001963488.1| deoxyribodipyrimidine photolyase-like protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776609|gb|ABZ94910.1| Deoxyribodipyrimidine photolyase-related protein [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780283|gb|ABZ98581.1| Putative deoxyribodipyrimidine photo-lyase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 499

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/380 (16%), Positives = 126/380 (33%), Gaps = 43/380 (11%)

Query: 40  VFI-ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE-WLDSY 97
           VFI    E    +    ++  F + ++    + L   G    Y       +S E    ++
Sbjct: 29  VFIREDNELCTYYRFHKQKILFFFLAMRAYAEELKSLGFFVHYEHYDPNSESYENQFLNF 88

Query: 98  CLQQRVTKL-FYNRQYEINEVRRDKLLEK------------RLQHRVICKSFDDSV---- 140
                + ++ F+  +    E R     +K             L  R   K++  +     
Sbjct: 89  IQVNNIQEIHFFEIEDTFFETRMLSCFQKTGIKWIQHKSPMFLTSRNDFKAYLQTHKKPF 148

Query: 141 --LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
                        + + +   P       +            A  L       N  + FD
Sbjct: 149 MKTFYEAQRKTFNILLNEKSEPIGGKWSFDSENRKKLPKNYCAPNLPKIKFSKNEIKTFD 208

Query: 199 --------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLS 246
                   +P    D   P   + A   L+ F KE+   +    D  ++       S L+
Sbjct: 209 TVDTHFPNHPGNTKDFWLPTDRKGAKLWLQDFLKERFVQFGPYEDAFSLDFPFLQHSVLT 268

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGK 305
           P+L++G+L+P++      + +      P      ++ ++I WREF R +   + +     
Sbjct: 269 PFLNVGLLTPKEVIESTLD-YAKKNSVPMESLEGFIRQIIGWREFIRGIYQNFGAKQESI 327

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            +     K+         + W  G TG P +D  +++ N  G+ H+  R++    L+   
Sbjct: 328 NYFGHKRKLT--------KHWYDGTTGIPPLDFVIQKCNLYGYAHHIERLMVVGSLMVLF 379

Query: 366 LVDWRIGEEYFMSQLLDGDL 385
            +D +    +FM   +D   
Sbjct: 380 EIDPKDAYRWFMEMFIDSSD 399


>gi|260796887|ref|XP_002593436.1| hypothetical protein BRAFLDRAFT_206680 [Branchiostoma floridae]
 gi|229278660|gb|EEN49447.1| hypothetical protein BRAFLDRAFT_206680 [Branchiostoma floridae]
          Length = 316

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 103/316 (32%), Gaps = 28/316 (8%)

Query: 136 FDDSVLLPPGSILNHALQMYKVYTP-FRKALIQNLVQADLRS-LPVPAIRLTGPVTPSNI 193
            D   ++P     +       +        L   L +       P P+     PV   + 
Sbjct: 1   VDAHNIVPCWETSDKQEHRAYIIRGKIMDKLPTYLTEFPPVCKHPHPSPSKPQPVDWVST 60

Query: 194 PRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG 252
               +      +  +   G    L  L  FCKE++  Y   R+ P  +  S LSP+   G
Sbjct: 61  KASLEVDRTVPEVTWAMPGSVGGLRQLELFCKERLEVYSADRNKPDHKAQSDLSPWYHFG 120

Query: 253 --VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIP 309
              +S ++    +++   +           +++E +IWRE   +   + P         P
Sbjct: 121 KCHVSVQRSILTVQQFQTE----HSQSVEKYIDEAVIWREMAENSAFYNPDRYDSLLGAP 176

Query: 310 WTEKIEWNKDSHLLQAW-------KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
              +      +   + +       +Q  T   + +AA  Q+   G MH  LRM  A  ++
Sbjct: 177 DWAQKTLRDHAGDKRQYIYSREQLEQARTHDDLWNAAQIQMVREGKMHGFLRMYWAKMIL 236

Query: 363 KD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPT 412
           +      V  +          LDG   +   G  WA    +D            R     
Sbjct: 237 EWTPSPEVALKEAIYLNDKYNLDGRDPNGYAGCLWAIGGLHDRDFQERPIYGKIRFMTYY 296

Query: 413 IQGKRFDPQGTFIRHW 428
              ++FD  G F++ +
Sbjct: 297 ASKRKFDVPG-FVKRY 311


>gi|256426122|ref|YP_003126775.1| deoxyribodipyrimidine photolyase-related protein [Chitinophaga
           pinensis DSM 2588]
 gi|256041030|gb|ACU64574.1| deoxyribodipyrimidine photolyase-related protein [Chitinophaga
           pinensis DSM 2588]
          Length = 492

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 142/383 (37%), Gaps = 33/383 (8%)

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW-LDSYCLQQRVTKLFY------NRQYEI 114
           +A++  + K L  K  V++ H     D  +E  ++ YC Q  +  + Y      NR  E+
Sbjct: 76  HATIQALIKWLHSKK-VYELHYAETDDYLLERRINRYCRQYDIAPVTYINPGFINRLDEV 134

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADL 174
                D      +Q   I +     +L+    +       +      R+ + +     D 
Sbjct: 135 -TTFFDGRKRYFMQDFYIHQRKTRQILI---DVKGPVGGHWSFDADNREKIPKGESIPDP 190

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           R  P  A +            + + P  A    +P+  Q A H L +F +E+   +    
Sbjct: 191 RFPP--AGKYLKEAISYVQQHYKNNPGDATTCRYPVTHQQAEHWLEQFLEERFRKFGIYE 248

Query: 235 DIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWRE 289
           D      +I   S L+P L+IG+L P Q   +       +   P +    ++ + L WRE
Sbjct: 249 DAIVQTESILYHSMLTPALNIGLLLPMQILEKAIAMAP-VHKVPLNSLEGFIRQILGWRE 307

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F R L     S      F        W+ +  +  ++  G TG P ID  + +L   G+ 
Sbjct: 308 FIRILYRREGSKQRTTNF--------WDHERPMPDSFYTGNTGIPPIDQTIHKLLRHGYT 359

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPY 405
           H+  R++     +    +      ++FM   +D        +  G  Q+A      + PY
Sbjct: 360 HHIERLMILGNFMLLCELHPDAVYQWFMELYIDAYDWVMVPNVYGMSQFADGGLMSTKPY 419

Query: 406 FRIFNPTIQGKRFDPQGTFIRHW 428
               N  ++   + P+G + + W
Sbjct: 420 ISSSNYILKMSNY-PKGDWCQVW 441


>gi|217074550|gb|ACJ85635.1| unknown [Medicago truncatula]
          Length = 220

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 27/198 (13%)

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTG 186
           +  V  K F  S L     +      M   Y  FR  + +  ++  + +L  +  +   G
Sbjct: 3   EENVEVKYFWGSTLYHVEDLPFGLEDMPSNYGGFRDRVQKLEIRKTIEALDQLKGLPSRG 62

Query: 187 PVTPSNIPRFFDYPFQAI-----------DPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            V   +IP   D                 +     GE  AL  L++F  E      +   
Sbjct: 63  DVQLGDIPTLMDLGLNPSAIMSQDGKQVPNSSMTGGETEALQRLKRFAAECEAQSNKGFK 122

Query: 236 IPAIQG------TSQLSPYLSIGVLSPRQCWNRLKE---------EFVDLLIKPKSGAFS 280
             A         + ++SP+L++G LSPR  ++ LK+            +     K+G   
Sbjct: 123 DGAQDSIYGANFSCKISPWLAMGCLSPRAMFDELKKTASSAVSASSSKNDGGSSKTGTNW 182

Query: 281 WLNELIWREFYRHLMAFY 298
            + EL+WR+F+R +   Y
Sbjct: 183 LMFELLWRDFFRFITKKY 200


>gi|238603470|ref|XP_002395956.1| hypothetical protein MPER_03894 [Moniliophthora perniciosa FA553]
 gi|215467586|gb|EEB96886.1| hypothetical protein MPER_03894 [Moniliophthora perniciosa FA553]
          Length = 114

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD-LLVDWRIGEEYFMS 378
                AWK+G TGFP IDA MRQL   GW+H+  R   A FL +    + W  G E F  
Sbjct: 28  EDRFLAWKEGRTGFPWIDAIMRQLRQEGWIHHLARHSVACFLTRGQCYISWERGAEVFDE 87

Query: 379 QLLDGDLASNNG 390
            L+D D  SN G
Sbjct: 88  YLIDWDPCSNPG 99


>gi|78778808|ref|YP_396920.1| hypothetical protein PMT9312_0423 [Prochlorococcus marinus str. MIT
           9312]
 gi|78712307|gb|ABB49484.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9312]
          Length = 496

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 109/290 (37%), Gaps = 27/290 (9%)

Query: 141 LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200
           L+ P          +      RK L + +   D+  L    ++    V        FD  
Sbjct: 162 LVNPDD--TPEGGKWSFDEMNRKKLPKKITIPDIPKL----LKNNFVVYAEESLANFDIE 215

Query: 201 F--QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGVL 254
           F  ++ + ++P     A   L  F K + + + +  D  + + +    S LSP L+ G+L
Sbjct: 216 FIGESNNFLYPTNFDEADEWLNDFFKHRFFLFGDYEDAISKENSFLWHSLLSPLLNSGLL 275

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK 313
           +P +  N+    F  +     +    ++ ++I WREF   +   Y +      F      
Sbjct: 276 TPDEVVNKAL-LFAKINNVSINSLEGFIRQIIGWREFICLVYKKYGTKMRNSNF------ 328

Query: 314 IEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
             WN ++  + +++ +G TG   +D  ++ +   G+ H+  R++     +    +     
Sbjct: 329 --WNFENKPIPESFYKGNTGIEPVDVVIKNIIKFGYCHHIERLMIIGNFMLLCRIHPNQV 386

Query: 373 EEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            ++FM   +D        +  G  Q++      + PY    N   +   F
Sbjct: 387 YKWFMGMFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYISSSNYVKKMSNF 436


>gi|86137238|ref|ZP_01055816.1| photolyase protein family protein [Roseobacter sp. MED193]
 gi|85826562|gb|EAQ46759.1| photolyase protein family protein [Roseobacter sp. MED193]
          Length = 497

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 64/437 (14%), Positives = 146/437 (33%), Gaps = 48/437 (10%)

Query: 21  TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80
            D+ AL     +       +F   P+   +     ++     AS+   Q++L + G+  +
Sbjct: 14  ADHPALLDPVRDVVLFEDPLFFGDPQYPARMH--RQKLWLHRASMAHYQQALVKLGLNAK 71

Query: 81  YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSV 140
                  + + + L     +Q +T +      +    +R +        ++        +
Sbjct: 72  IIPYDPQNGACQRLFQNLKEQGITTMVMADPVDFIAEQRIQESADATGIKLEVLPSPGFL 131

Query: 141 LLPPGSILNHALQMYKVYTPFRKALIQNLVQ---------------------------AD 173
             P  +   +  +   +   F KA  + L                              +
Sbjct: 132 NSPEHNHEWYRGRKRWLMAEFYKAQRRRLDVLMENDKPLGGKWSLDTENRKKVPKALLEN 191

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVE 232
           L  +  P       V  + +   F +   +++ ++ P  + +A     +F +++   + +
Sbjct: 192 LPLIEWPVHDDIDAVAKARVLSEFPHTIGSLEQLYYPTTQASAAAWFDQFLRQRFDRFGD 251

Query: 233 QRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-W 287
             D      +    + L+P L+IG+L+PRQ  +     + +    P +    +L ++I W
Sbjct: 252 FEDAIVAGESWLWHAMLTPVLNIGLLTPRQVLDTTL-AYAERKDIPLNSLEGFLRQIIGW 310

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           REF R   A                   W     + +++  G TG   +D  ++++   G
Sbjct: 311 REFMRATYADLGVTMRQTNH--------WGHHRPMPKSFYSGTTGIAPLDDTIQRVLATG 362

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSV 403
           + H+  R++     +    +D      +FM   +D        +     Q A      + 
Sbjct: 363 YCHHIERLMVLGGFMFLCEIDPDAVYRWFMEMFVDSYDWVMVPNVYAMSQHADGGLITTK 422

Query: 404 PYFRIFNPTIQGKRFDP 420
           PYF   N   +   +D 
Sbjct: 423 PYFSGSNYIRKMSHWDK 439


>gi|71083008|ref|YP_265727.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062121|gb|AAZ21124.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 496

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 85/216 (39%), Gaps = 12/216 (5%)

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +   +     T  + P     F D+P    D        + + +L  F KEK   + + 
Sbjct: 191 PKFPKINETNHTKKLKPIIEKLFKDHPGSTNDFWLATEYNDVVKLLDFFIKEKSNLFGDY 250

Query: 234 RD----IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            D       I   S LSPY+++G+++P     ++ E      I+  S        + WRE
Sbjct: 251 EDAVNQKDNILFHSALSPYINLGLITPEIIIQKILEFHKKHKIRMNSLEGYIRQIIGWRE 310

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F R +   Y      K F     K++        ++W +G TG P +D A++     GW 
Sbjct: 311 FMRGIYQGYSDEMETKNFFNHERKMK--------KSWYEGTTGLPPLDHAIKNAVNHGWS 362

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           H+  R++  S ++    V   I  ++FM   +D   
Sbjct: 363 HHIERLMILSNIMNLCEVKPTIVYKWFMEMFVDSSD 398


>gi|152967990|ref|YP_001363774.1| deoxyribodipyrimidine photolyase-like [Kineococcus radiotolerans
           SRS30216]
 gi|151362507|gb|ABS05510.1| Deoxyribodipyrimidine photolyase-like [Kineococcus radiotolerans
           SRS30216]
          Length = 371

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 73/191 (38%), Gaps = 19/191 (9%)

Query: 229 YYVEQRDI---PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
            Y  +R     P  +G ++LSPY+  G+L     W    +        P      + +EL
Sbjct: 24  GYAARRSEVWPPERRGATRLSPYVRHGLLPLPTVWAAAGDA-------PARDRAKFRDEL 76

Query: 286 IWREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           +W+E+ RHL A   P+      F        W ++           T          +L+
Sbjct: 77  LWQEYARHLYARLGPATARPLRFAAPVPAQPWEREPWPQDMACVATTTA--------ELH 128

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVP 404
             GW+ N+ RM  AS        DWR G       LLDG  A+N  GWQWA  TG   V 
Sbjct: 129 EEGWLVNQTRMWLASQYSVRAGADWREGAREMYRHLLDGSPAANRLGWQWAVGTGTGKVY 188

Query: 405 YFRIFNPTIQG 415
            F  +    + 
Sbjct: 189 GFSRWQVEKRA 199


>gi|189911853|ref|YP_001963408.1| deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776529|gb|ABZ94830.1| Deoxyribodipyrimidine photolyase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
          Length = 523

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 85/241 (35%), Gaps = 34/241 (14%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
             G   AL +L  F K K+  Y+ +R   + P +  TS LSPYL  G +   + +  + +
Sbjct: 255 KGGRNEALRLLNDFLKHKLDLYLTKRSEPNRPELTATSGLSPYLHFGWIGLDEIFVAVLK 314

Query: 266 EFVDLLIKPKS-----------------GAFSWLNELI-WRE-FYRHLMAFYPSVCMGKP 306
                   P+                   A  +L+ELI WR+  Y       P       
Sbjct: 315 HSAKGKWNPERMSHEKPGDREHFYSPSVSANHFLDELITWRDIGYLFFWKDKPKQINLSH 374

Query: 307 FIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              W +      + +  +  + L+ ++   T   + +AA  +L   G +HN +RM+    
Sbjct: 375 LPDWVKTNFQKHQNDHREYVYTLEQFESAKTHDELWNAAQTELVKTGKIHNYMRMLWGKK 434

Query: 361 ---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
                K     + I E        DG   ++  G  W    G    P+F   N      R
Sbjct: 435 VIEWSKTYEEAFFILEHLNNKYAYDGRNPNSYTGILW--CFGLFDRPWFPERN-VFGNVR 491

Query: 418 F 418
           F
Sbjct: 492 F 492


>gi|193795850|gb|ACF21978.1| CPD1 [Cercospora zeae-maydis]
          Length = 72

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 49/72 (68%)

Query: 284 ELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           E+ WREFY+H++A +P VCM KPF      +EW  D  L + W  G TGFPI+DAAMRQ 
Sbjct: 1   EVAWREFYKHVLAHWPYVCMSKPFKYEYSDVEWEYDDALFEKWTSGLTGFPIVDAAMRQC 60

Query: 344 NTIGWMHNRLRM 355
             + WMHNRLRM
Sbjct: 61  KEMSWMHNRLRM 72


>gi|124026270|ref|YP_001015386.1| hypothetical protein NATL1_15641 [Prochlorococcus marinus str.
           NATL1A]
 gi|123961338|gb|ABM76121.1| Uncharacterized protein deoxyribodipyrimidine photolyase-like
           protein [Prochlorococcus marinus str. NATL1A]
          Length = 496

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 146/413 (35%), Gaps = 58/413 (14%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDS 96
           +F     QW+Q      +  F  A++   ++ L  +G   I  ++ + S  +D++ +L  
Sbjct: 32  LFFGCDSQWQQ-KFHCNKIIFHKATMDSYEEDLKSQGFNVIYLKHQRESRTEDNLNYLSE 90

Query: 97  YCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQHRVICKSFDDSVLLPPGSILNHALQMY 155
                 +T       YE  +   +K ++   L+  +  +   + + L    I    L   
Sbjct: 91  KGFNYFIT-------YEAFDWSLEKRIKDFSLKKNIKLEIRKNDMFLTCKDISEEILNQK 143

Query: 156 KVYTPFRKALIQN-----LVQAD------------------------LRSLPVPAIRLTG 186
           K+Y   +   IQ      L++ D                         R   +   RL  
Sbjct: 144 KIYGMQKFYKIQRKSLNILIEKDGSPTGGTWSFDKMNRKKLPNSIEVPRIPTIKTSRLLD 203

Query: 187 PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GT 242
                    + DY     +  +P+  ++A   L  F  E+   + +  D           
Sbjct: 204 KAKKEVSINYKDYYGSTENFNYPLSHKDAEEWLDNFLIERFNLFGDYEDAIHSNHRTLWH 263

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
           S LSP ++ G+L+PRQ  ++  E +    I   +    ++ ++I    +  LM    S+ 
Sbjct: 264 SVLSPLINSGLLTPRQIIDKSWEFYQSNNI-GINCYEGFVRQIIGWREFILLMYKRNSLE 322

Query: 303 MGKPFIPWTEKIEWN-KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
           +            W+ +D  +  ++  G TG   +D +++ +   G+ H+  R++    L
Sbjct: 323 LRNGNF-------WDFEDKPIPLSFYTGQTGIRPLDDSIKNILETGYAHHIERLMIVGNL 375

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFN 410
           +           ++FM   +D        +  G  Q++      + PY    N
Sbjct: 376 MLLCRFHPNQVYKWFMELFIDSYDWVMVPNVYGMSQFSDGGLFTTKPYISGSN 428


>gi|183221779|ref|YP_001839775.1| deoxyribodipyrimidine photo-lyase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167780201|gb|ABZ98499.1| Deoxyribodipyrimidine photolyase (DNA photolyase; Photoreactivating
           enzyme) [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 496

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 85/241 (35%), Gaps = 34/241 (14%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQR---DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
             G   AL +L  F K K+  Y+ +R   + P +  TS LSPYL  G +   + +  + +
Sbjct: 228 KGGRNEALRLLNDFLKHKLDLYLTKRSEPNRPELTATSGLSPYLHFGWIGLDEIFVAVLK 287

Query: 266 EFVDLLIKPKS-----------------GAFSWLNELI-WRE-FYRHLMAFYPSVCMGKP 306
                   P+                   A  +L+ELI WR+  Y       P       
Sbjct: 288 HSAKGKWNPERMSHEKPGDREHFYSPSVSANHFLDELITWRDIGYLFFWKDKPKQINLSH 347

Query: 307 FIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
              W +      + +  +  + L+ ++   T   + +AA  +L   G +HN +RM+    
Sbjct: 348 LPDWVKTNFQKHQNDHREYVYTLEQFESAKTHDELWNAAQTELVKTGKIHNYMRMLWGKK 407

Query: 361 ---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKR 417
                K     + I E        DG   ++  G  W    G    P+F   N      R
Sbjct: 408 VIEWSKTYEEAFFILEHLNNKYAYDGRNPNSYTGILW--CFGLFDRPWFPERN-VFGNVR 464

Query: 418 F 418
           F
Sbjct: 465 F 465


>gi|116070558|ref|ZP_01467827.1| photolyase protein family [Synechococcus sp. BL107]
 gi|116065963|gb|EAU71720.1| photolyase protein family [Synechococcus sp. BL107]
          Length = 495

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 18/286 (6%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
           +++           F     + L +  +      +       +     R    P      
Sbjct: 161 LIDADGSPRGGQWSFDADNRKKLPKGIIVPPVPVSTPCDDHGSMLEQLRTEQLPLLGDGD 220

Query: 207 MF--PIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCW 260
            F  PI  + A   L +F  ++   +    D  +    +     L+P L+IG+L+PRQ  
Sbjct: 221 QFNYPINHEQAALWLDQFLDDRFKDFGAYEDAISRHHRVMWHGVLTPMLNIGLLTPRQIL 280

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           +R  E   D    P +    ++ ++I    +  +M     V M              +D 
Sbjct: 281 DRTLE-CADKNNIPLNSLEGFIRQIIGWREFMAVMYRRHGVEMRNG------NFWQFEDR 333

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
            +  A+  G TG P ID A++     G+ H+  R++    +++           +FM   
Sbjct: 334 PIPDAFYTGTTGLPPIDDAIKHALQTGYCHHIERLMLLGNMMQLCGFHPNRVYVWFMELF 393

Query: 381 LDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           +D        +  G  Q+A      + PY    N   +   + P+G
Sbjct: 394 VDAYDWVMVPNVYGMSQFADGGIFTTKPYVSGSNYVRKMSDY-PKG 438


>gi|92429542|gb|ABD93515.2| DNA photolyase protein [Solanum arcanum]
          Length = 145

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 10/146 (6%)

Query: 38  IAVFIATPEQWRQHG-----ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE 92
           +AV+   P  + +           ++ F+  S+  ++K+L  +G                
Sbjct: 1   LAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVR----IGKPET 56

Query: 93  WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHA 151
            L           ++ +R+   +EV+ +  ++  ++   +  K F  S L     +    
Sbjct: 57  VLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKL 116

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSL 177
            QM   Y  FR+ +    V+  + +L
Sbjct: 117 EQMPTNYGGFREKVQGLEVRKTIEAL 142


>gi|161138102|gb|ABX58023.1| cryptochrome 1a [Triticum aestivum]
 gi|161138104|gb|ABX58024.1| cryptochrome 1a [Triticum aestivum]
 gi|161138106|gb|ABX58025.1| cryptochrome 1a [Triticum aestivum]
          Length = 76

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 45/74 (60%)

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G +YF   LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLP
Sbjct: 1   WGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLP 60

Query: 431 ELNNVPTQYIHAPH 444
           EL  +PT++IH P 
Sbjct: 61  ELARLPTEWIHHPW 74


>gi|302838410|ref|XP_002950763.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
          nagariensis]
 gi|300263880|gb|EFJ48078.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
          nagariensis]
          Length = 97

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 6  AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHF 60
          A    ++W RNDLR+ DN  L  AC      V+ V++  P  + +           ++ F
Sbjct: 3  ARKPAVMWFRNDLRLHDNPVLDRACREG-TSVLPVYVLDPRDYGKGPNGFGRTGPTRAQF 61

Query: 61 IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93
          I  ++  ++  L   G           +   E 
Sbjct: 62 IMDAVQDLRSRLRAAGSDLIVRMGHPEEVVPEL 94


>gi|123965722|ref|YP_001010803.1| hypothetical protein P9515_04871 [Prochlorococcus marinus str. MIT
           9515]
 gi|123200088|gb|ABM71696.1| Uncharacterized deoxyribodipyrimidine photolyase-like protein
           [Prochlorococcus marinus str. MIT 9515]
          Length = 496

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 104/284 (36%), Gaps = 21/284 (7%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF--QAI 204
           ++N           F +   + L +           +    +   N+    +  F  ++ 
Sbjct: 162 LVNLDGSPKGGKWSFDELNRKKLPKKITIPEIPRLPKNEFVMQAENLITDLNIEFIGESN 221

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCW 260
             ++P     A + L  F + +++ + +  D  + +      S LSP L+ G+L+P++  
Sbjct: 222 HFIYPTSFSEADNWLHDFFESRIFLFGDYEDAISKKKVFLWHSLLSPLLNSGLLTPKEVI 281

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN-K 318
           N+    F +    P +    ++ +++ WREF   +   + +      F        WN +
Sbjct: 282 NKAL-TFAEKNKVPMNSLEGFIRQIVGWREFICLVYEKHGTKMRTTNF--------WNFE 332

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           ++ +   +  G TG   +D  +  +   G+ H+  R++     +    +      ++FM 
Sbjct: 333 NNPMPDVFYTGNTGIEPVDIVINNIIKYGYCHHIERLMIVGNFMLLCRIHPDQVYKWFME 392

Query: 379 QLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
             +D        +  G  Q++      + PY    N   +   +
Sbjct: 393 MFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYISSSNYVKKMSDY 436


>gi|124006828|ref|ZP_01691658.1| photolyase protein family [Microscilla marina ATCC 23134]
 gi|123987509|gb|EAY27218.1| photolyase protein family [Microscilla marina ATCC 23134]
          Length = 425

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 99/276 (35%), Gaps = 21/276 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLR-SLPVPAIRLTGPVTPSNIPRFFDYPFQA 203
              L      +   T  RK   +  V   +R     P        T  +        +  
Sbjct: 83  EEDLTPVGGKWSFDTENRKKYPRKKVPPPIRFPATNPFYEEAKRYTKQHFGTHP--GWLG 140

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQC 259
             P++     +A   L+ F  E++  +    D    +      S L+P L++G+L+PRQ 
Sbjct: 141 DTPLYATNFADAEAWLQAFLTERLAEFGTYEDAIVQEEVILNHSVLTPMLNVGLLTPRQV 200

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
            +     F      P +    ++ ++I WREF R +  +  +    K +  +T KI    
Sbjct: 201 IDNTL-AFSQAQQVPLNSLEGFVRQIIGWREFIRGVYQYKGTEERTKNYWGFTRKIP--- 256

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
                 ++ +G TG   +D  ++++   G+ H+  R++     +     D      +FM 
Sbjct: 257 -----PSFYEGTTGITPVDVTIKKVLKTGYCHHIERLMVLGNFMVLCEFDPDEVYRWFME 311

Query: 379 QLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFN 410
             +D        +  G  Q+A      + PY    N
Sbjct: 312 LFVDAYDWVMVPNVYGMSQFADGGLMSTKPYISGSN 347


>gi|212543459|ref|XP_002151884.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Penicillium
           marneffei ATCC 18224]
 gi|210066791|gb|EEA20884.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Penicillium
           marneffei ATCC 18224]
          Length = 452

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 13/123 (10%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           L W + DLR+ DN+AL  A   +    I                  +  F   +L  +Q+
Sbjct: 328 LHWFKGDLRLKDNRALTMASELAAKNNIV-------------RCPARVDFTLRNLKVLQQ 374

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR 130
            L    I           +    +   C +   + LF N +YE++E+RR   L +    +
Sbjct: 375 KLDNLDIPLYMETQEQRRNVPGRIAELCERWGASHLFANIEYEVDELRRKAKLVRLFADK 434

Query: 131 VIC 133
            + 
Sbjct: 435 GVA 437


>gi|33865778|ref|NP_897337.1| photolyase family protein [Synechococcus sp. WH 8102]
 gi|33632948|emb|CAE07759.1| photolyase protein family [Synechococcus sp. WH 8102]
          Length = 495

 Score = 83.5 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 70/440 (15%), Positives = 139/440 (31%), Gaps = 59/440 (13%)

Query: 21  TDNKALYAACHNSDAKVIAVFIATPEQWRQHG-----ISARQSHFIYASLLQVQKSLSQK 75
            D+ A+ A       + +A+ I  P  +         +  ++     AS+    + L  +
Sbjct: 13  ADHPAIQA------GRTVAL-IEDPLLFGTDPQWPLRMHHQRRLLHRASMTVYAEQLRGR 65

Query: 76  GIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS 135
           G    + +     D+   L           +      +    RR     + +  RV    
Sbjct: 66  GFNVIHQRHDAAPDTQGHLQLLHSA-GYRHVHLVDLVDHWLERRLNAFAESVALRVSVLP 124

Query: 136 FDDSVLLPPGSILNHA-----------------------LQMYKVYTPFRKALIQNLVQA 172
               +LL P  +L                          +         R +   +  + 
Sbjct: 125 TP--MLLTPADVLEKHFGTGKKPLMAKFYEMQRTRLGVLMDAEGRPVGGRWSFDADNRKK 182

Query: 173 DLRSLPVPAIRLTGPVTPSNI--PRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEK 226
             + + VP I +  P T  N    +        +  +    +PI  + A   L  F  E+
Sbjct: 183 LPKDISVPPIPVATPSTVVNTSRQQLAQENLPGVGKLDGFYYPIDHKEASRWLDNFLDER 242

Query: 227 VYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +  +    D  + Q        L+P L+IG+L+P+Q  +R      ++   P +    ++
Sbjct: 243 LVQFGAYEDAISTQHQVMWHGVLTPMLNIGLLTPQQVLDRTLAR-AEVGDVPLNSLEGFI 301

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
            ++I    +   M     V M              +D  + +A+  G TG P ID A+  
Sbjct: 302 RQIIGWREFMAAMYRRHGVTMRNG------NFWEVEDRPIPEAFYTGSTGLPPIDDAISH 355

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAAST 398
               G+ H+  R++    ++            +FM   +D        +  G  Q+A   
Sbjct: 356 ALDTGYCHHIERLMLLGNVMLLCGFHPTRVYSWFMELFVDAYDWVMVPNVYGMSQFADGG 415

Query: 399 GNDSVPYFRIFNPTIQGKRF 418
              + PY    N   +   +
Sbjct: 416 IFTTKPYVSGSNYVRKMSDY 435


>gi|33860982|ref|NP_892543.1| hypothetical protein PMM0425 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33639714|emb|CAE18884.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 496

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 98/284 (34%), Gaps = 21/284 (7%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
           +LN           F +   + L +           +    +    I       F     
Sbjct: 162 LLNPDGSPQGGKWSFDELNRKKLPKNINIPEIPKFQKNQFVIHAEKIISNLQIEFIGESN 221

Query: 207 MF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCW 260
            F  P   + A   L  F +++   + +  D  + +      S LSP L+ G+L+ ++  
Sbjct: 222 YFIYPTTFEEADSWLHDFFEDRFSLFGDYEDAISKEKVFLWHSLLSPLLNSGLLTAKEVI 281

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           ++    + +    P +    ++ +++ WREF   +   Y +      F        WN D
Sbjct: 282 DKAL-TYGEKNKVPINSLEGFIRQIVGWREFICLVYEKYGTQMRTTNF--------WNFD 332

Query: 320 SH-LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           +  + + + +G TG   +D  +  +   G+ H+  R++     +    +      ++FM 
Sbjct: 333 NKPMPECFYKGSTGIDPVDIVINNIIKYGYCHHIERLMIIGNFMLLCRIHPDHVYKWFME 392

Query: 379 QLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
             +D        +  G  Q++      + PY    N   +   +
Sbjct: 393 MFIDSYDWVMVPNVYGMSQFSDGGIFSTKPYISSSNYVKKMSDY 436


>gi|319954985|ref|YP_004166252.1| deoxyribodipyrimidine photolyase-related protein [Cellulophaga
           algicola DSM 14237]
 gi|319423645|gb|ADV50754.1| deoxyribodipyrimidine photolyase-related protein [Cellulophaga
           algicola DSM 14237]
          Length = 493

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 137/413 (33%), Gaps = 52/413 (12%)

Query: 39  AVF-IATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY 97
            ++ I     ++ +    ++  F  AS+   +  L        Y + +     I  L   
Sbjct: 24  PIYLIEEYLFFKHYKFHKQKIAFHRASMKCYEAFLKANNHEVIYIEATEDVSDIRTLIKQ 83

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH------- 150
             ++ + +L Y    +    +R +   K   + +  K FD  + +     L H       
Sbjct: 84  LNKEGINQLNYIEVSDYWLRKRIEETSKA--YTITLKEFDSPLFINNKEDLTHFFKKDKK 141

Query: 151 ----------------------ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                                    M   +T   +   +   +    S+  P +      
Sbjct: 142 SFHQTTFYKQERKRLGILVDKNDEPMGGKWTYDTENRKKYPAKKTPPSIHFPEVTTYHKE 201

Query: 189 TPSNIPRFFD--YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT---- 242
               +   F   Y     +  +PI  + A     +F +++   +    D    + +    
Sbjct: 202 AKEYVDLHFSDHYGALTKEVYYPIDFEAAKVWFDQFLEQRFSEFGIYEDAIVGENSILNH 261

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSV 301
           S ++P L++G+L+P    +     + +    P +    ++ ++I WREF R +       
Sbjct: 262 SVITPMLNVGLLTPHLIIDTTI-AYAEKHDIPINSLEGFVRQIIGWREFMRGMYELKGVY 320

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
              + F  +T KI         +++  G TG   ID  ++++   G+ H+  R++     
Sbjct: 321 QRTRNFWGFTRKIP--------KSFYTGTTGIVPIDTTIKKILKTGYCHHIERLMVLGNF 372

Query: 362 VKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFN 410
           +     D     ++FM   +D        +  G  Q+A      + PY    N
Sbjct: 373 MLLCEFDPEEVYKWFMELFIDSYDWVMVPNVYGMSQFADGGSFATKPYISGSN 425


>gi|194702896|gb|ACF85532.1| unknown [Zea mays]
          Length = 376

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 108/326 (33%), Gaps = 32/326 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNS-----DAKVIAVFIATPEQWRQHGISARQSHFIY 62
              + W+  D R+ DN AL  A   +      A +   F   P  +   G   RQ  F+ 
Sbjct: 26  GPVVYWMLRDQRLADNWALLHAAELAAASTPAAPLAIAFTLFPRPFL-LGAHLRQLGFLL 84

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDK 121
             L ++      +G+ F   +    +     L S   +   + L  +           D 
Sbjct: 85  RGLRRLAADAHARGLPFFLLEGGPAE-----LPSLVRRLGASALVADFSPLRPVREALDA 139

Query: 122 LLEKRLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------D 173
           ++++ L+    +     D   ++P       + ++      FR  + + + +        
Sbjct: 140 VVQELLRDAANMAVHQVDAHNVVPVW---TASGKLEYSAKTFRSKVNKVINEYLVEYPEV 196

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVY 228
            +  P    +       + I   F       +  +   GE +A+ +L      F  +++ 
Sbjct: 197 PQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESSAMEVLLGSKDGFLTKRIK 256

Query: 229 YYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y   R+ P      S LSPYL  G +S ++C    K+      + PKS        +I 
Sbjct: 257 NYDTGRNDPTKPHALSCLSPYLHFGHISAQRCALEAKKR---RHLSPKSVDTFLEELIIR 313

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEK 313
           RE   +   + P          W  K
Sbjct: 314 RELADNFCYYQPQYDSLAGAWEWARK 339


>gi|195647124|gb|ACG43030.1| hypothetical protein [Zea mays]
          Length = 376

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 108/326 (33%), Gaps = 32/326 (9%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNS-----DAKVIAVFIATPEQWRQHGISARQSHFIY 62
              + W+  D R+ DN AL  A   +      A +   F   P  +   G   RQ  F+ 
Sbjct: 26  GPVVYWMLRDQRLADNWALLHAAELAAASTPAAPLAIAFTLFPRPFL-LGAHLRQLGFLL 84

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDK 121
             L ++      +G+ F   +    +     L S   +   + L  +           D 
Sbjct: 85  RGLRRLAADAHARGLPFFLLEGGPAE-----LPSLVRRLGASALVADFSPLRPVREALDA 139

Query: 122 LLEKRLQH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA------D 173
           ++++ L+    +     D   ++P       + ++      FR  + + + +        
Sbjct: 140 VVQELLRDAANMAVHQVDAHNVVPVW---TASGKLEYSAKTFRSKVNKVINEYLVEYPEV 196

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVY 228
            +  P    +       + I   F       +  +   GE +A+ +L      F  +++ 
Sbjct: 197 PQWAPWCMEQPKSVDWDALINSIFSEAENVPEINWCEPGESSAMEVLLGNKDGFLTKRIK 256

Query: 229 YYVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIW 287
            Y   R+ P      S LSPYL  G +S ++C    K+      + PKS        +I 
Sbjct: 257 NYDTGRNDPTKPHALSCLSPYLHFGHISAQRCALEAKKR---RHLSPKSVDTFLEELIIR 313

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEK 313
           RE   +   + P          W  K
Sbjct: 314 RELADNFCYYQPQYDSLAGAWEWARK 339


>gi|161138098|gb|ABX58021.1| cryptochrome 2 [Triticum aestivum]
          Length = 76

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 45/74 (60%)

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G +YF   LLD D+ S+  GWQ+ A    D     R+ NP +QG+++DP G ++R W+P
Sbjct: 1   WGMKYFWDVLLDADIESDILGWQYIAGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIP 60

Query: 431 ELNNVPTQYIHAPH 444
           EL  +P ++IH P 
Sbjct: 61  ELARMPGEWIHHPW 74


>gi|161138100|gb|ABX58022.1| cryptochrome 2 [Triticum aestivum]
          Length = 76

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G +YF   LLD D+ S+  GWQ+ + +  D     R+ NP +QG+++DP G ++R W+P
Sbjct: 1   WGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIP 60

Query: 431 ELNNVPTQYIHAPH 444
           EL  +P ++IH P 
Sbjct: 61  ELARMPGEWIHHPW 74


>gi|260586482|gb|ACX46123.1| cryptochrome 4 [Sylvia borin]
          Length = 78

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLVDWRIG 372
           I W KD+  L  WK   TGFP IDA M QL   GW+H+  R   A FL +  L + W  G
Sbjct: 1   ICWYKDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGHLWISWEEG 60

Query: 373 EEYFMSQLLDGDLASNNG 390
            + F   L+D D + N G
Sbjct: 61  MKVFEELLIDADYSINAG 78


>gi|212275864|ref|NP_001130328.1| hypothetical protein LOC100191423 [Zea mays]
 gi|195612420|gb|ACG28040.1| deoxyribodipyrimidine photolyase family protein [Zea mays]
          Length = 706

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 6/129 (4%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
                 +  +VW ++DLRI D+  L AA       V+ +++         G S +    +
Sbjct: 38  PVRDGGAAAVVWFKHDLRIDDHPGLAAAVSEPRRPVVPLYVFDRRILA--GYSDKMLELL 95

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  ++ +L  +             ++ + +     + +   +F   + E        
Sbjct: 96  LFALKDLKMTLKSQDSDLLIG----LGNAEDVVLKLVNEVQAGLVFTEEEVEYRVRDVLA 151

Query: 122 LLEKRLQHR 130
            +E  L + 
Sbjct: 152 NVESSLSNG 160


>gi|327342144|gb|AEA50859.1| cry1-1 [Populus tremula]
          Length = 268

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 9/73 (12%)

Query: 413 IQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDKN------DLSLNYPLPIV--DHK 464
            +G +FDP G ++R WLPEL  +PT++IH P +  +        +L  NYPLPIV  D  
Sbjct: 1   FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAA 60

Query: 465 KAC-HHTLNQYYA 476
           K      L++ + 
Sbjct: 61  KVRLEEALSEMWQ 73


>gi|297799464|ref|XP_002867616.1| deoxyribodipyrimidine photolyase family protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313452|gb|EFH43875.1| deoxyribodipyrimidine photolyase family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 557

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 80/201 (39%), Gaps = 17/201 (8%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            AT   S  +VW ++DLR+ D+  L A+  +S   VI +++       ++     +   I
Sbjct: 25  SATNEGSTAVVWFKHDLRVDDHPGLLASSKHS--SVIPLYVLDRRILSRYTTDTLELAII 82

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
             +L  ++K+L ++G         ++ ++   +     + R   +F   + E +      
Sbjct: 83  --ALEDLRKTLKKQGSNLML----SYGNAENVIADLVKEVRAHSVFVEEEVEYHLCDVLD 136

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
            ++K+L+      S +   ++   +    +  +        ++  +        SLPVPA
Sbjct: 137 GVKKKLE--GFSLSGEQPRIVFWRTPFYESQNLTD----LPQSWEEFKKLKLPISLPVPA 190

Query: 182 IRLTGP---VTPSNIPRFFDY 199
            R + P   +   ++P   D 
Sbjct: 191 ARFSSPGSELQWGSVPTLDDL 211


>gi|300778231|ref|ZP_07088089.1| photolyase [Chryseobacterium gleum ATCC 35910]
 gi|300503741|gb|EFK34881.1| photolyase [Chryseobacterium gleum ATCC 35910]
          Length = 492

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/434 (14%), Positives = 140/434 (32%), Gaps = 65/434 (14%)

Query: 39  AVFIATPEQW-RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS----NFDDSIEW 93
            VF+     + RQ+    ++  F  A++   +  L + G   +Y + S    +  + I+ 
Sbjct: 29  PVFLIEEFLFFRQYAFHKQKIAFHRATMKFYEDHLKKSGFEVEYIESSSKYSDIRNLIQK 88

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR------------VICKS-----F 136
           L+    +   T               D  LEKRL+              +  +      F
Sbjct: 89  LEKDHFKTIQTTDVC-----------DHWLEKRLKETKLNLEMPNSPLFINTQEDLKDYF 137

Query: 137 DDSVLLPPGSILNHA----LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSN 192
           +   L                + K   P       +            A  +  P     
Sbjct: 138 EGKNLYHQTDFYKQQRITRNILMKGGKPLGGKWTYDTENRKKYPKNKKAPFIHFPKNNEY 197

Query: 193 IPRFF---------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--- 240
                         +Y     + ++P   + A   L +F + +   +    D    +   
Sbjct: 198 YQEAKAYTEKYFSTNYGTLTDEQLYPTTFKEAEQWLEQFLEMRFPEFGIYEDSIVEKEYF 257

Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY 298
              S LSP +++G+L+      +      +  I P +    ++ + L WREF R +  + 
Sbjct: 258 LHHSVLSPMMNVGLLTAEHVLEKAISFARENDI-PVNSVEGFVRQILGWREFVRGVYLYQ 316

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                 K +        W     L +++    TG   +D++++++   G+ H+  R++  
Sbjct: 317 GVYQRNKNY--------WQHKQKLPESFYTAQTGIRPVDSSIQKILKTGYAHHIERLMIF 368

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
           + L+    +D     ++FM   +D        +  G   ++      + PY    +   +
Sbjct: 369 ANLMNLCQIDPDEIYQWFMEMFIDAYDWVMVPNVYGMSSFSDGGKMSTKPYISGSHYIKK 428

Query: 415 GKRFDPQGTFIRHW 428
              + P G +   W
Sbjct: 429 MSDY-PDGEWAGQW 441


>gi|161138108|gb|ABX58026.1| cryptochrome 1b [Triticum aestivum]
          Length = 76

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 46/74 (62%)

Query: 371 IGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLP 430
            G +YF   LLD DL S+  GWQ+ + +  DS     I NP ++G +FDP G ++R WLP
Sbjct: 1   WGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDPHGEYVRRWLP 60

Query: 431 ELNNVPTQYIHAPH 444
           EL  +PT++IH P 
Sbjct: 61  ELARLPTEWIHHPW 74


>gi|91762569|ref|ZP_01264534.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91718371|gb|EAS85021.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 445

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 12/216 (5%)

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK---VYYY 230
            +   +     T  + P     F D+P    D        + + +L  F KEK      Y
Sbjct: 140 PKFPKINETNHTKKLKPIIEKLFKDHPGSTNDFWLATEYADVVELLDFFIKEKSNLFGDY 199

Query: 231 VEQRD-IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            +  +    I   S LSPY+++G+++P     ++ E      I+  S        + WRE
Sbjct: 200 EDAVNQKDNILFHSALSPYINLGLITPEIIIQKILEFHKKHKIRMNSLEGYIRQIIGWRE 259

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F R +   Y      K F           +  + ++W +G TG   +D A++     GW 
Sbjct: 260 FMRGIYQGYSHEMETKNFFK--------HNRKMKKSWYEGTTGLLPLDYAIKNAVNHGWS 311

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           H+  R++  S ++    V      ++FM   +D   
Sbjct: 312 HHIERLMILSNIMNLCEVKPTTVYKWFMEMFVDSSD 347


>gi|332141439|ref|YP_004427177.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551461|gb|AEA98179.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 165

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI-----ATPEQWRQHGISAR 56
             ++ +   + W R+DLR+ D  A+   C  + ++V   +I          +    +   
Sbjct: 9   AGSSDVQRGVFWFRHDLRLHDQPAIAELC-TAVSQVTFTYILDDKCFDDAAFGFSPMGKH 67

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F+  +L  +++ L+Q+G      + +  +  ++ L++       T L  ++    +E
Sbjct: 68  RHTFLLQTLSDLKQQLNQRGHELLILKGNTAECIVQLLNA----GGYTHLGVSQHCGFDE 123

Query: 117 VRRDKLLEKRLQ 128
             +   +++   
Sbjct: 124 TAQLNTVKRFFN 135


>gi|296123988|ref|YP_003631766.1| deoxyribodipyrimidine photolyase-related protein [Planctomyces
           limnophilus DSM 3776]
 gi|296016328|gb|ADG69567.1| deoxyribodipyrimidine photolyase-related protein [Planctomyces
           limnophilus DSM 3776]
          Length = 532

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 75/431 (17%), Positives = 137/431 (31%), Gaps = 65/431 (15%)

Query: 44  TPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC------SNFDDSIEWLDSY 97
           TPE+  Q      +  F ++++   +  L  K     Y +              + L   
Sbjct: 48  TPEEVEQIWCHRLRITFFFSAMRHFRDELRAKKFRVHYREMNQDPAKDEGQTFTDLLLRD 107

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL--------------- 142
             +  + +L      E  + R  + LE   Q   +  ++ D                   
Sbjct: 108 AHEVGIRELVV---VEPGDWRVKQRLEAAAQKLGVPLTYLDDTHFFATHMDFQKFASGKK 164

Query: 143 -------------PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP----AIRLT 185
                            +++ A Q       F     ++   +    LP P    A  +T
Sbjct: 165 KLILEYFYREMRKKHQILVDEAGQPEGGQWNFDHENRESFGSSGPGKLPAPLKFSADTIT 224

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQG 241
             VT     RF   P +  D    +   +AL +L+ F +  +  +    D      A   
Sbjct: 225 QEVTDLVRARFPSNPGEVFDETLAVTRVDALKLLKHFVRHHLPRFGRYEDAMWTGEATLH 284

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV 301
            S+LS YL++ +L+PR+C     E +    +   S        L WREF R +   +   
Sbjct: 285 HSRLSVYLNVKLLNPRECVQVAVEAYQAGHVDLASTEGFVRQILGWREFIRGIYWSHMPR 344

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                F    + +           +  G T    +  +M  +   G+ H+  R++    L
Sbjct: 345 YAELNFFEHQQPLP--------SFFWDGQTEMVCVRESMSHVLKHGYAHHIHRLMVLGNL 396

Query: 362 VKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF-------RIFN 410
            +          ++ M+  LD      L +  G  Q+       + PY        R+ N
Sbjct: 397 SQTFGAHPYQFHQWHMAMYLDAIDWVSLPNTLGMSQFGDGGIVGTKPYCATGAYISRMSN 456

Query: 411 PTIQGKRFDPQ 421
              Q  +FDP+
Sbjct: 457 -FCQSCQFDPK 466


>gi|323449922|gb|EGB05806.1| hypothetical protein AURANDRAFT_30135 [Aureococcus anophagefferens]
          Length = 73

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 45/73 (61%)

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           L   W +G TG+P +DA MRQL   G M + LR + A+FLV+DL V WR G E+F + LL
Sbjct: 1   LFAKWTRGATGYPFVDAGMRQLAAEGRMPHLLRQLCAAFLVRDLRVPWRWGAEWFEAHLL 60

Query: 382 DGDLASNNGGWQW 394
           D    +N G W +
Sbjct: 61  DHAPDANYGNWGY 73


>gi|86605777|ref|YP_474540.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           JA-3-3Ab]
 gi|86554319|gb|ABC99277.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           JA-3-3Ab]
          Length = 513

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/397 (13%), Positives = 133/397 (33%), Gaps = 52/397 (13%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL +       +V  + + +           ++   +++++    + L Q+G    Y + 
Sbjct: 24  ALASLSALPPHRVPVLLVESHAWASSRNHHQQKLVLVWSAMRHFAQELQQRGHPVTYAEA 83

Query: 85  SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC---KSFDDSVL 141
            ++ + ++        Q++      R  +  ++     +EK L+  + C      ++  L
Sbjct: 84  EDYAEPLQAWARQHRLQQI------RLMQPTDIPVRDEVEK-LRSALPCPLLVLENNHFL 136

Query: 142 LPPGSILNHALQMYKV-----------------------YTPFRKALIQNLVQADLRSLP 178
                 ++ A    ++                          +             R  P
Sbjct: 137 WTARQFIDWASGRKRLLLEDFYRQGRKRFRILMDGSQPLGGRWNYDRENRQPPQPGRRYP 196

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQR 234
            P       +T + + +   +       +    + +    AL +L  F + ++ ++   +
Sbjct: 197 PPLTFPPDAITQAVMEKVRRHYGHHFGSLEGFGWAVTRAQALQVLEDFIQHRLPHFGPWQ 256

Query: 235 DIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWRE 289
           D   ++      S LSPYL++G+L+P++     ++ +    I P   A  ++ + L WRE
Sbjct: 257 DAMQVEEDFLYHSLLSPYLNLGLLTPQEVITAAEQAYHRGGI-PLPSAEGFIRQILGWRE 315

Query: 290 FYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           + R    +  P       F      +           +  G T    +   +RQ+   G+
Sbjct: 316 YMRGFYEYQMPQGYAQTNFFGHYRPLP--------DFFWTGETDMACLRHTLRQIRRHGY 367

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
            H+  R++  S       +  +  E +F    +D   
Sbjct: 368 AHHIQRLMVLSNFALISGIQPQAVEAWFHDVFIDSYD 404


>gi|307108702|gb|EFN56941.1| hypothetical protein CHLNCDRAFT_143484 [Chlorella variabilis]
          Length = 798

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 18/150 (12%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAK--------------VIAVFIATPEQWRQHGISAR 56
           L+W + DLR+ D+   +AA   + A               V+ VF   P ++    +   
Sbjct: 33  LLWYKRDLRLDDHPGWHAAAAAAAAAAAAAADAAAGAPRGVVPVFCFDPARYAHLVLPRG 92

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
            +  +  +L  + +SL Q G               E L     +     +   ++ E + 
Sbjct: 93  GAEALCRALASLDRSLRQHGSRLVVR----VGAWEEQLPLLAAELGAAGVVAEQEVEADW 148

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146
            +  + +   L   V    +   +L     
Sbjct: 149 RQGVERVAAALPGGVAVHHWRAPLLASHDD 178


>gi|329133696|gb|AEB78729.1| DNA photolyase [Acinetobacter sp. Ver7]
          Length = 62

 Score = 80.8 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/62 (74%), Positives = 54/62 (87%)

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIF 409
           HNR+RMI A FL K+LL+DWR GE++FM  L+DGDLA+NNGGWQW ASTG D+VPYFRIF
Sbjct: 1   HNRVRMIVAIFLSKNLLIDWRKGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIF 60

Query: 410 NP 411
           NP
Sbjct: 61  NP 62


>gi|227505175|ref|ZP_03935224.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940]
 gi|227198224|gb|EEI78272.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940]
          Length = 120

 Score = 80.8 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 23/111 (20%)

Query: 305 KPFIPWTEKIEWNKDSH---------------LLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           +P        +W  D                  L+AW+ G TG P++DA MR+L   G+M
Sbjct: 7   EPVRDKFRNFDWYWDGGGIDTSERDPRPHPLPELEAWRTGETGIPLVDAGMRELWQTGYM 66

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMS--------QLLDGDLASNNGGW 392
           HN +RM+  SFL K+L + WR GEE+F           +      SN   W
Sbjct: 67  HNHVRMVVGSFLTKNLGIHWRHGEEWFRDRARPPESGHVGGRAPPSNPSLW 117


>gi|320166331|gb|EFW43230.1| photolyase [Capsaspora owczarzaki ATCC 30864]
          Length = 559

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 83/213 (38%), Gaps = 13/213 (6%)

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           R++ R+   +F    L     +L        +      +LI+++            +   
Sbjct: 105 RIRQRLETSAFVTHTLYDMNMLLVACKNTPPLTYGKFLSLIESIGPPVAPLDAPHRLAER 164

Query: 186 GPVTPSN-----IPRFFDYPFQAIDP--MFPIGEQNALHILRKFCKE--KVYYYVEQRDI 236
           GP   ++     IP   +          MF  GE      +  +  +  +V  + +    
Sbjct: 165 GPAGQTDAATGGIPSLAELGISEPHTPLMFHGGETAGQARMHHYLGDLARVANFSKPELD 224

Query: 237 PAI---QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           P +     +S +SPYL  G +SPR+ +  + + ++D  + P     S L +L WREF+  
Sbjct: 225 PTLFEEPSSSVMSPYLRFGCVSPRRFFFEINKVYIDSGVTPTQPPVSLLGQLYWREFFYL 284

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
           + A  P+        P  ++I+W+ +   L AW
Sbjct: 285 VAAGTPNFDRA-AGNPICKQIQWDVNPEYLAAW 316



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 410 NPTIQGK-RFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVD 462
           NP       +DP+G F+R ++P L N P++YI+ P S   +        + ++YP PIVD
Sbjct: 309 NPEYLAAWHYDPEGKFVRRFVPALRNFPSEYIYMPWSAPLEVQREAGCIVGVDYPKPIVD 368

Query: 463 HKKACHHTLNQYYAAKKQ 480
           H++ C   + +   A  Q
Sbjct: 369 HEQVCRTNMERMRDAYAQ 386



 Score = 37.3 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 12 VWLR-NDLRITDNKALYAACH 31
           W R N LR+ DN AL AA  
Sbjct: 41 HWFRINALRLDDNPALLAAIE 61


>gi|254456383|ref|ZP_05069812.1| photolyase protein family protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083385|gb|EDZ60811.1| photolyase protein family protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 469

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 12/216 (5%)

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +   +     T  + P     F D+P    +        + + +L  F KEK   + + 
Sbjct: 164 PKFPKINETTHTKKLKPIIEKIFKDHPGSTDNFWLATEYDDVVKLLNFFIKEKSNLFGDY 223

Query: 234 RD----IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
            D       I   S LSPY+++G+++P     ++ +      I+  S        + WRE
Sbjct: 224 EDAVNQKDNILFHSALSPYINLGLITPELIIQKILDFHKKNKIRMNSLEGYIRQVIGWRE 283

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F R +   Y        F     K++         +W  G TG P +D A++     GW 
Sbjct: 284 FMRGIYQGYSEKMETGNFFKQNRKMK--------NSWYVGTTGLPPLDYAIKNAVNHGWS 335

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           H+  R++  S ++    +   I  ++FM   +D   
Sbjct: 336 HHIERLMILSNIMNLCEIKPTIVYKWFMEMFVDSSD 371


>gi|300957649|ref|ZP_07169841.1| hypothetical protein HMPREF9547_03390 [Escherichia coli MS 175-1]
 gi|300315626|gb|EFJ65410.1| hypothetical protein HMPREF9547_03390 [Escherichia coli MS 175-1]
          Length = 58

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 38/51 (74%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQ 57
          M+ HLVW R DLR+ DN AL AAC NS A+V+A++IATP QW  H +S RQ
Sbjct: 1  MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQ 51


>gi|311747651|ref|ZP_07721436.1| photolyase protein [Algoriphagus sp. PR1]
 gi|126575637|gb|EAZ79947.1| photolyase protein [Algoriphagus sp. PR1]
          Length = 493

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 69/417 (16%), Positives = 135/417 (32%), Gaps = 46/417 (11%)

Query: 48  WRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107
           ++Q+    ++  F  AS+   Q+ L +KG    Y   ++    I    +   Q+++ ++ 
Sbjct: 35  FKQYNFHKQKIAFHRASMKAFQRFLEKKGNKVHYIDSNSELSDIRNFSNEIDQKKIKEVH 94

Query: 108 YNRQYEINEVRRDKLLE-----------KRLQHRVIC--------KSFDDSVLLPPGSIL 148
                +    +R K +              L  +           KSF  +         
Sbjct: 95  CIDPVDDWLEKRIKKMAGSCDLTFYENPAFLNSKKDLGGFFKPDKKSFFQTTFYKQQRKK 154

Query: 149 NHAL--QMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA--- 203
              L  +             +N  +      P P               +    FQ    
Sbjct: 155 RKILLDKNQDPEGGSWTYDKENRKKYPKGKTPPPIQFPDATGFWEEACSYTKKYFQDNPG 214

Query: 204 ---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSP 256
                P++ I  + A    ++F K + + +    D    +      S LSP +++G L P
Sbjct: 215 KLNKQPIYSINTEQAEAWFKQFLKSRFHEFGTYEDAIVKEESYLNHSLLSPLINVGFLLP 274

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
            +        F      P +    ++ ++I WREF R +     S    K F  +  KI 
Sbjct: 275 -EFVLEDSLTFAKSENVPINSTEGFVRQIIGWREFIRGMYESKGSFSRTKNFWGFKRKIP 333

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
                    ++  G TG   +D  ++++   G+ H+  R++     +     D      +
Sbjct: 334 --------ASFYDGSTGIEPVDQTIKKVLETGYCHHIERLMILGNFMLLCEFDPDEVYRW 385

Query: 376 FMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           FM   +D        +  G  Q+A      + PY    N   +   + P+G +   W
Sbjct: 386 FMELFIDAYDWVMVPNVYGMSQFADGGLFATKPYVAGSNYLKKMSNY-PKGEWESVW 441


>gi|260436163|ref|ZP_05790133.1| photolyase protein family protein [Synechococcus sp. WH 8109]
 gi|260414037|gb|EEX07333.1| photolyase protein family protein [Synechococcus sp. WH 8109]
          Length = 498

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 105/297 (35%), Gaps = 25/297 (8%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF----- 201
           +++           F     + L +  L   P PA R +G V      R           
Sbjct: 161 LIDPDGGPVGGRWSFDSDNRKKLPKGILVPEP-PAERSSGSVALVEAARQQLIGEGVAGI 219

Query: 202 -QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSP 256
                  +P+   +A   L +F ++++  +    D  + Q      S L+P L+IG+L+P
Sbjct: 220 GSWERFHYPVTHGDAARWLDQFLEQRLRQFGAYEDAISTQHQVMWHSVLTPMLNIGLLTP 279

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
            Q  +R  E   +    P +    +L ++I WREF   +   +        F  +     
Sbjct: 280 LQVLDRTLER-AEAGDIPLNSLEGFLRQIIGWREFMAAIYRRHGVEMRNGNFWGF----- 333

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
              D  +  A+    TG P ID A+R     G+ H+  R++    ++            +
Sbjct: 334 --DDRPIPSAFYTASTGLPPIDDAIRHALETGYCHHIERLMLLGNVMLLCGFHPTRIYTW 391

Query: 376 FMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           FM   +D        +  G  Q+A      + PY    N   +   +  +G +   W
Sbjct: 392 FMELFVDAYDWVMVPNVYGMSQFADGGIFTTKPYLSGSNYVRKMSDYG-KGEWCDTW 447


>gi|77964004|gb|ABB13343.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
          Length = 286

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 415 GKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKAC- 467
           G +FDP G ++R WLPEL  +PT++IH P             +L  NYPLPIV+   A  
Sbjct: 2   GYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQV 61

Query: 468 --HHTLNQYYAAKKQS 481
                L++ +  +  S
Sbjct: 62  RLQEALSEMWQLEAAS 77


>gi|330814352|ref|YP_004358591.1| protein-like deoxyribodipyrimidine photolyase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487447|gb|AEA81852.1| protein-like deoxyribodipyrimidine photolyase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 469

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 83/216 (38%), Gaps = 17/216 (7%)

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-- 242
           T  + P     F  +P        P   ++A+ +   F KEK   + +  D   ++    
Sbjct: 175 TKKLKPFIEKNFSSHPGILDSFNHPTTRKDAIKLYLNFLKEKFALFGDYEDSMTVKSHTV 234

Query: 243 --SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP 299
             S LSP +++G+++P        + F      P +    ++ ++I WREF R +   Y 
Sbjct: 235 FHSMLSPIINLGLITPATLIRETLD-FAKANKIPLNSLEGYVRQIIGWREFMRGIYQNYE 293

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
              +   F     K+         ++W  G TG   +D A++     G+ H+  R++   
Sbjct: 294 KRLLNTNFFNHQRKLS--------KSWYDGTTGIVPLDHAIKNCLQFGYTHHIERLMVVC 345

Query: 360 FLVKDLLVDWRIGEEYFMSQL---LDGDLASNNGGW 392
            L+    +      ++FM       D  +A N  G 
Sbjct: 346 NLMNLSGIQPVQVYKWFMEMYVDSSDWVMAPNVMGM 381


>gi|18874061|dbj|BAB85485.1| cryptochrome [Sarcophaga bullata]
          Length = 81

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 408 IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIV 461
           +  P    KR DP G +I+ ++PEL NVP +YIH P              + ++YP  ++
Sbjct: 5   VTCPIALAKRLDPMGQYIKQYVPELANVPKEYIHEPWRMPMNIQEDSDCVIGIHYPERLI 64

Query: 462 DHKKACHHTLNQYYAAK 478
           D   AC          +
Sbjct: 65  DLNVACKRNTIAMRTLR 81


>gi|293652305|gb|ADE60791.1| CPD photolyase [Trichoplusia ni]
          Length = 233

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 63/200 (31%), Gaps = 6/200 (3%)

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYY 230
             +   P  A     P+         +         +   G   A+ +L+ F   ++  +
Sbjct: 33  PPVIKHPYTAKFEPEPIDWDEAIVSREADKNVGPVAWARPGYDEAVKMLKSFLDNRLKVF 92

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +R+ P     S LSP+   G +S ++    ++E          +     +      + 
Sbjct: 93  ATKRNDPTKDALSNLSPWFHFGQISVQRVALSVQEHKSKYTESVNAFLEEAIVRRELADN 152

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTI 346
           +      Y S+  G          +  KD     + L    +  T   + ++A  QL   
Sbjct: 153 FCFYCEHYDSI-KGASQWAQKTLDDHRKDKRTHIYTLDQLAKSETHDDLWNSAQIQLVKE 211

Query: 347 GWMHNRLRMITASFLVKDLL 366
           G MH  LRM  A  +     
Sbjct: 212 GKMHGFLRMYWAKKIGHSCF 231


>gi|148261327|ref|YP_001235454.1| DNA photolyase domain-containing protein [Acidiphilium cryptum
           JF-5]
 gi|146403008|gb|ABQ31535.1| DNA photolyase domain protein [Acidiphilium cryptum JF-5]
          Length = 214

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 58/153 (37%), Gaps = 7/153 (4%)

Query: 6   AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
              V +VW + DLR+ D+        ++   V+ + I  PE WR   IS RQ  F+   +
Sbjct: 2   GTGVSVVWFKRDLRLADHA--ALTAASAAGTVLPLVIVEPEYWRLPDISHRQYAFLAGCI 59

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLE 124
             +  +++  G             +IE L++   +     L+ + +        RD+ + 
Sbjct: 60  EDLAAAIAAAGGRLLV----CVGPAIEVLEALRRRLGGFALWSHEETGNRWTHARDRAVR 115

Query: 125 KRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
           +  + + +  +      +  G  L+      + 
Sbjct: 116 RWARAQGVAWTELRQFGVIRGPALDRDRWAAQW 148


>gi|293652309|gb|ADE60793.1| CPD photolyase [Chrysodeixis chalcites]
          Length = 237

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 6/192 (3%)

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP-IGEQNALHILRKFCKEKVYYY 230
             +   P  A     P+         +         +   G   A+ +L+ F + ++  +
Sbjct: 37  PPVIKHPYTAKFDPEPIDWDEAIVSREADKNVGPVAWARPGYDEAVKMLKSFLENRLKVF 96

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
             +R+ P     S LSP+   G +S ++    ++E          +     +      + 
Sbjct: 97  ATKRNDPTKDALSNLSPWFHFGQISVQRVALCVQEHKSKYTESVNAFLEEAIVRRELADN 156

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDS----HLLQAWKQGYTGFPIIDAAMRQLNTI 346
           +      Y S+  G          +  KD     + L+   +  T   + ++A  QL   
Sbjct: 157 FCFYCEHYDSI-KGASQWAQKTLDDHRKDKRTHIYTLEQLAKSETHDDLWNSAQIQLVKE 215

Query: 347 GWMHNRLRMITA 358
           G MH  LRM  A
Sbjct: 216 GKMHGFLRMYWA 227


>gi|1197525|gb|AAC43723.1| photolyase [Myxococcus xanthus]
 gi|1589149|prf||2210323A photolyase
          Length = 400

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 109/363 (30%), Gaps = 29/363 (7%)

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +    + +G+ +         +    L       R   +  +           +   K 
Sbjct: 2   DMATGCAARGLPYWLELPRTSKEHRPRLAQLGR--RAAAIVSDLFPTYIIPGHLRGAAKA 59

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL--------- 177
           L   V   + D S ++P   I    +  Y +    +K   + L +A              
Sbjct: 60  LD--VPLFAVDASCVVPMQRIATRQIGAYTLRPKLKKLWPEYLDRAVPNRAVKAAAAGRK 117

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
             P    +           FD+           G +  L  L+ F  +++  Y E R+ P
Sbjct: 118 LEPDFATSDARESRESLDAFDFDHSVAPIQERGGRKAGLDALQAFVHQRLEGYDEGRNDP 177

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF 297
            +   S LSP+   G L             +       +    +L EL+ R        F
Sbjct: 178 GLARQSNLSPFFHWGNL----FAGEAARAAIRARGAQDASVQGFLEELLVRRELGFNYCF 233

Query: 298 Y---PSVCMGKPFIPWTE------KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           +   P         PW +      + +  +  + L+  +   T   + +AA R+L   G 
Sbjct: 234 HTPGPQQLSVASLPPWAKETLTRHQKDAREHRYSLKQLETARTADGLWNAAQRELVERGR 293

Query: 349 MHNRLRMITASFLVKD---LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
           +HN LRM+    +++         +          +DG   ++   + W     +     
Sbjct: 294 IHNYLRMLWGKKILEWTPSPQEALQRIAFLNDKYAVDGRDPASVANFMWVLGLHDRPFQE 353

Query: 406 FRI 408
            ++
Sbjct: 354 RQV 356


>gi|302810940|ref|XP_002987160.1| hypothetical protein SELMODRAFT_426049 [Selaginella moellendorffii]
 gi|300145057|gb|EFJ11736.1| hypothetical protein SELMODRAFT_426049 [Selaginella moellendorffii]
          Length = 987

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 103/345 (29%), Gaps = 64/345 (18%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
              +  V +VW + DLR+ D+  L AA  +    VI +F+  P  +R  G S      + 
Sbjct: 73  GDRSRKVCIVWFKKDLRMDDHPGLVAAASSGYDAVIPLFVFDPMLFR--GWSQDFVEALV 130

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE--INEVRRD 120
            ++  ++ +L   G             + + +     Q     +F   + E    ++  D
Sbjct: 131 EAVADLKLALQAAGSDLAIR----VGSAQDVMYKLVHQVNPRDVFTEDEIEEGPRKIVCD 186

Query: 121 K--LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
              +L+ + Q+    + +  S L     +   +    K        +      + L  LP
Sbjct: 187 TWSVLKAKCQNEPALRQWTAS-LHENQDLEFISDDYRKYKAMQYSLVSPLGAPSLLPPLP 245

Query: 179 VPAIRLTGPVTPS-----------------------------NIPRFFDYPFQAIDPMFP 209
               + + P                                    R      + ++  FP
Sbjct: 246 GDVNKGSIPAVEDFILLVNQSQLTILKEKDAGETLMYLQRSSRTTRRRPLWLRKLNAWFP 305

Query: 210 -----------------IGEQNALHILRKFCKEKVYYYVEQRDIP------AIQGTSQLS 246
                             G  +ALH LR F +        +R          +   S   
Sbjct: 306 KVMANNLSGVEHDVFVGCGATDALHALRAFLQFPQPSTYNRRMTQHLQRKKDVSFRSTFG 365

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFY 291
             L++G +S R+  +     +            + ++E+   E+Y
Sbjct: 366 KVLALGTISLRRMHHEAL-LYSTSKWVSSQTVTTAIDEVKLIEWY 409


>gi|88802911|ref|ZP_01118438.1| hypothetical protein PI23P_09975 [Polaribacter irgensii 23-P]
 gi|88781769|gb|EAR12947.1| hypothetical protein PI23P_09975 [Polaribacter irgensii 23-P]
          Length = 493

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 61/414 (14%), Positives = 145/414 (35%), Gaps = 54/414 (13%)

Query: 39  AVF-IATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY 97
            ++ I     +++     ++  +  A++   +  L  KGI   Y + +     +  L  +
Sbjct: 24  PIYMIEEFTYFKKFNFHKQKIAYHRATMKHYEAFLVSKGIEVMYIESTENLSDVRKLIPF 83

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL-------PPGSILNH 150
              + +T   +N   +  +    + +E+      I ++  DS L         P    + 
Sbjct: 84  LKSEGITN--FNY-IDPIDNLLQQQIEEGCISNTIERTVFDSPLFLNSKEDLQPFFRSDK 140

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRS------------LPVPAIRLTGPVTPSNIPRFF- 197
                  +   +++    L+  D +                PA ++   +   ++  F+ 
Sbjct: 141 KKYYQTSFYTDQRSKRNILIDPDGKPTGGKWTFDTENRKKYPAKKIPPTIQFPDVDSFYK 200

Query: 198 ------------DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT--- 242
                       +    + + ++P   + +    ++F +++   +    D    + +   
Sbjct: 201 EALNYVNKNFSKNLGKLSENSLYPTNFETSKQWFQQFLEQRFLEFGTYEDAVVAENSILN 260

Query: 243 -SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPS 300
            S L+P L++G+L+P     +    F      P +    ++ ++I WREF R       S
Sbjct: 261 HSVLTPMLNVGLLTPENIVAQSI-AFAKANNIPINSLEGFVRQIIGWREFMRGFYESRGS 319

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
               + F  +T+KI         +++  G TG   ID  +++    G+ ++  R++    
Sbjct: 320 DARTRNFWEFTKKIP--------KSFYDGTTGIYPIDETIKKTLKTGYCNHIERLMILGN 371

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFN 410
            +     D      +FM   +D        +  G  Q+A      + PY    N
Sbjct: 372 FMMLCEFDPDEVYRWFMELFIDSYDWVMVPNVYGMSQFADGGLMATKPYISGSN 425


>gi|304393315|ref|ZP_07375243.1| photolyase family protein [Ahrensia sp. R2A130]
 gi|303294322|gb|EFL88694.1| photolyase family protein [Ahrensia sp. R2A130]
          Length = 505

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 138/444 (31%), Gaps = 55/444 (12%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M+  L+   + L   ++                +F   P+   +      +  +  A++ 
Sbjct: 1   MTTALLIFPHQL-FAEHPGFEETLDRVVIVEEPLFFCDPQYPAKFHK--MRLSYHRATIS 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
              K L   G   +     +    +        ++ + ++ +      ++   +K L   
Sbjct: 58  AYAKRLESDGHTVERADYEHDTSLLAKTVRRLKEEGIDRIIFAH---PHDFTLEKRLHTA 114

Query: 127 LQHRVICKSFDDS--VLLPPG-------------------------SILNHALQMYKVYT 159
           L    I     D+   +  P                           IL           
Sbjct: 115 LSDAEIEHEELDTPAFINTPQLNREYREGKKRWFMADFYKFQRKRLDILMDGDNPQGGQW 174

Query: 160 PFRKALIQNLVQADLRSLPVPAIRLTGPVTPS---NIPRFFDYPFQAIDPMF-PIGEQNA 215
            F     + + +A +  +P    R   P        + + F   + + + ++ PI  + A
Sbjct: 175 SFDDDNRKKVPKAKMAEIPQLHPRNATPYEQDARQWVEKHFSGNYGSAETLWFPIDHEGA 234

Query: 216 LHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
              L  F +++ + +    D      +      L+P L++G+L+PRQ  N     F D  
Sbjct: 235 AEWLNTFLEQRFHLFGPYEDAIVKGESWLWHGVLTPMLNVGLLTPRQIVNETL-AFADKH 293

Query: 272 IKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
             P +    ++ ++I WREF     A              T KI          ++  G 
Sbjct: 294 DVPINSLEGFIRQIIGWREFMAATYADLGVEMRTTNHWKHTRKIP--------HSFYDGT 345

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL----A 386
           TG   ID A+ ++N   + H+  R++     +     D      +FM   +D        
Sbjct: 346 TGIGPIDDAIHRINDTAYAHHIERLMVLGGFMFLCEFDPDDIYRWFMEMFIDAYDWVMVP 405

Query: 387 SNNGGWQWAASTGNDSVPYFRIFN 410
           +     Q A      + PYF   N
Sbjct: 406 NAYAMSQNAGGGNITTKPYFSGSN 429


>gi|257388729|ref|YP_003178502.1| deoxyribodipyrimidine photolyase-related protein [Halomicrobium
           mukohataei DSM 12286]
 gi|257171036|gb|ACV48795.1| deoxyribodipyrimidine photolyase-related protein [Halomicrobium
           mukohataei DSM 12286]
          Length = 508

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 64/394 (16%), Positives = 127/394 (32%), Gaps = 57/394 (14%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99
           V I +    R+      +   +++++   + +L + G    Y++   F+D  E   ++  
Sbjct: 26  VMIESSGFLRRLPYHPHKPTLVFSAMRHFRDALREAGRTVDYYRAETFEDGFE---THFE 82

Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD-SVLLPPGSILNHALQMYKVY 158
           +     L            R + L +R  H     +  D   L  PG+           +
Sbjct: 83  RHPDDDLVTMTPASHGGTERLRTLIER--HGGTLTTVPDERFLCAPGTFDEWTDGPPYRH 140

Query: 159 TPFRKALIQN-------------------------LVQADLRSLPVPAIRLTGPVTPSNI 193
             F +++ +                            + +  ++P      T     S +
Sbjct: 141 ESFYRSMRRETGYLMDGDDPVGGEWNYDEQNRETPPDEWEPPTVPTFEPDETTRRVQSWV 200

Query: 194 PRFFD-------YPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AI 239
               D       Y     DP    +P+  Q A   L  F ++++  +   +D        
Sbjct: 201 RDHHDGGYEEAPYGGDWADPEPFRWPVTRQQARRALDAFVEDRLADFGAYQDAMVESEWA 260

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAF- 297
              S LS  L++G+L P +   R  E + +    P      ++ ++I WREF RH+    
Sbjct: 261 MAHSLLSTSLNLGLLGPAEVVERAIEAY-EAGDAPLHSVEGFVRQVIGWREFVRHVYRRE 319

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P +                    L   +  G T    +DAA+  +   G+ H+  R++ 
Sbjct: 320 MPELATANQLGA---------SEDLPAFFWTGETDMACLDAAIDGVRKRGYAHHIERLML 370

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
            S     L V+      +F +  +D         
Sbjct: 371 LSNFSLLLGVEPAQLNRWFHAGYVDAFHWVTTPN 404


>gi|172037665|ref|YP_001804166.1| putative deoxyribodipyrimidine photolyase [Cyanothece sp. ATCC
           51142]
 gi|171699119|gb|ACB52100.1| putative Deoxyribodipyrimidine photolyase [Cyanothece sp. ATCC
           51142]
          Length = 501

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 69/434 (15%), Positives = 153/434 (35%), Gaps = 45/434 (10%)

Query: 24  KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
            AL + C N+  +   +FI +    ++     ++   +++++    + LS +G    Y  
Sbjct: 17  AALLS-CKNNKQETPVIFIESHNYIQKRPYHQQKLVLVFSAMRHFAEELSSQGWQVSYKV 75

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE-----------KRLQHRVI 132
             +F+     L+++  + ++T+L      +   +RR +  +             L     
Sbjct: 76  AHDFE---SALNNWIKENKITELRVVSPCDRPFLRRIQSFKLDCKTKFISNNHFLWSNEE 132

Query: 133 CKSFDDS---VLLPPG--SILNHALQMYKVYTPFRKALIQNLVQADLRS----LPVPAIR 183
            K ++DS   +LL             +     P       +             P P   
Sbjct: 133 FKQWNDSRKRLLLEDFYREGRKRFNILMDEDQPIGDKWNFDKQNRKPPKQNLNPPTPLWF 192

Query: 184 LTGPVTPSNIPRFFDY---PFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRD-IPA 238
               +T   I     Y    +  I+P  + +    AL +L  F +  +  +   +D +  
Sbjct: 193 EPDAITEQVIKDIKSYKIASYGKIEPFKWGVTRSQALQVLDHFLENNLNNFGAYQDAMIT 252

Query: 239 IQGT---SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL 294
            + T   S +SPY+++G+L+P +   ++++ + +    P +     + + L WRE+   +
Sbjct: 253 GEYTMWHSLISPYINLGLLTPLEVIQKIEKAYHE-FDYPLNSVEGLIRQILGWREYMYGI 311

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                     K +    E +           W    T    +   ++Q+   G+ H+  R
Sbjct: 312 YQLMDDDYRDKNWFDHQENLP-------AFYWDSSQTDMNCLKQILQQVEETGYAHHIQR 364

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFN 410
           ++  S     + V  +   ++F S  +DG       +  G  Q+A      S PY    N
Sbjct: 365 LMVLSNFALIIGVSPQAINDWFHSAFIDGYDWVMVPNVIGMGQFADGGILASKPYAASAN 424

Query: 411 PTIQGKRFDPQGTF 424
              +   +     +
Sbjct: 425 YINKMSDYCKSCEY 438


>gi|167846552|ref|ZP_02472060.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei B7210]
          Length = 108

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 1   MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           ++ SL    ++L                D  + + S+        ++++R+Y 
Sbjct: 59  LHGSL----RALGAALAALGGTLALLRGDEHDTIVSFAAALGAGAVYWSRRYA 107


>gi|78212891|ref|YP_381670.1| photolyase family protein [Synechococcus sp. CC9605]
 gi|78197350|gb|ABB35115.1| photolyase protein family [Synechococcus sp. CC9605]
          Length = 498

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 18/231 (7%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNR 262
            +P+   +A   L +F ++++  +    D  + Q      S L+P L+IG+L+P+Q  +R
Sbjct: 226 HYPVTHGDAARWLDQFLEQRLRQFGAYEDAISTQHQVMWHSVLTPMLNIGLLTPQQVLDR 285

Query: 263 LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
             E        P +    +L +++ WREF   +   +        F  +        D  
Sbjct: 286 TLER-AKAGDIPLNSLEGFLRQIVGWREFMAAMYRRHGVEMRNGNFWGF-------DDRP 337

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           +  A+    TG   ID A+R     G+ H+  R++    ++            +FM   +
Sbjct: 338 IPSAFYTASTGLAPIDDAIRHALETGYCHHIERLMLLGNVMLLCGFHPTRIYTWFMELFV 397

Query: 382 DGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHW 428
           D        +  G  Q+A      + PY    N   +   +  +G +   W
Sbjct: 398 DAYDWVMVPNVYGMSQFADGGIFTTKPYLSGSNYVRKMSDYR-KGEWCDTW 447


>gi|22655767|gb|AAN04184.1| Putative CPD photolyase [Oryza sativa Japonica Group]
          Length = 565

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 130/384 (33%), Gaps = 38/384 (9%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH--FIYASLLQV 68
           + W+  D R+ DN AL  A   + A    + +A     R   +SAR+    F+   L ++
Sbjct: 41  VYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRL 100

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEKRL 127
               + + + F       F      + +   +   + L  +           D ++    
Sbjct: 101 AADAAARHLPFFL-----FTGGPAEIPALVRRLGASTLVADFSPLRPVREALDAVVGDLR 155

Query: 128 QH--RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
           +    V     D   ++P       + +M      FR  + + + +  +    +PA+   
Sbjct: 156 REAPGVAVHQVDAHNVVPVW---TASAKMEYSAKTFRGKVSKVMDEYLVEFPELPAVVPW 212

Query: 186 GPVTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHIL----RKFCKEKVYYYVEQR 234
               P        I R         +  +   GE+ A+  L      F  +++  Y   R
Sbjct: 213 DREQPEGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKSYETDR 272

Query: 235 DIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKE------EFVDLLIKPKSGAFSWLNEL-I 286
           + P      S LSPYL  G +S ++C    K+      +  ++    K    ++L EL +
Sbjct: 273 NDPTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLSPKMFEVTCVLKQSVDAFLEELVV 332

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW------KQGYTGFPIIDAAM 340
            RE   +   + P          W  K   +  +   +        +   T  P+ +A+ 
Sbjct: 333 RRELADNFCYYQPQYDSLSGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQ 392

Query: 341 RQLNTIGWMHNRLRMITASFLVKD 364
            ++   G MH  +       ++ D
Sbjct: 393 LEMVHHGKMHGFMSKPLVHIILFD 416


>gi|331656727|ref|ZP_08357689.1| deoxyribodipyrimidine photo-lyase (DNA
          photolyase)(Photoreactivating enzyme) [Escherichia coli
          TA206]
 gi|331054975|gb|EGI26984.1| deoxyribodipyrimidine photo-lyase (DNA
          photolyase)(Photoreactivating enzyme) [Escherichia coli
          TA206]
          Length = 57

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
          M+ HLVW R DLR  DN AL AAC NS A+V+A++IATP QW  H +S RQ+  I
Sbjct: 1  MTTHLVWFRQDLRQHDNLALAAACRNSSARVLALYIATPHQWAAHNVSPRQAELI 55


>gi|86609405|ref|YP_478167.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557947|gb|ABD02904.1| deoxyribodipyrimidine photolyase family protein [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 525

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 56/398 (14%), Positives = 129/398 (32%), Gaps = 54/398 (13%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL +    S  +V  + I +           ++   +++++    + L Q+G    Y + 
Sbjct: 24  ALASLSTLSPDRVPVILIESHRWASSRNHHQQKLVLVWSAMRHFAQELQQRGYPVTYVEA 83

Query: 85  SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR----------LQHRVICK 134
            ++ + ++        Q++      R  +  ++     +EK           L++     
Sbjct: 84  DSYAEPLQTWAKQHQLQQI------RLMQPADIPVRDEIEKLRSTLPCPLLILENNHFLW 137

Query: 135 SFDDSVLLPPGSILNHAL-----------------QMYKVYTPFRKALIQNLVQADLRSL 177
           + D    +   S     L                     +   +                
Sbjct: 138 TADQ--FIEWASGRKRLLLEDFYREGRRRFRILMDGPKPLGGRWNYDRENRHPPKPGMRY 195

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQ 233
           P P       +T + I +   +       +    + +    AL +L  F  E++ ++   
Sbjct: 196 PRPLTFSPDAITQAVIAKVRQHYGHHFGSLEGFGWAVTRAQALQVLDHFIHERLPHFGPW 255

Query: 234 RDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWR 288
           +D           S LSPYL++G+L+P +    +++ +    I P   A  ++ + L WR
Sbjct: 256 QDAMQAGEDFLFHSLLSPYLNLGLLTPHEVIAAVEQAYHRGGI-PLPSAEGFIRQILGWR 314

Query: 289 EFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           E+ R    +  P+      F      +         + +  G T    +   + Q+   G
Sbjct: 315 EYMRGFYEYQMPNGYAQNNFFGHQRPLP--------EFFWTGKTDMACLQHTLDQIRRHG 366

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           + H+  R++  S       +  +  E +F    +D   
Sbjct: 367 YAHHIQRLMVLSNFALISGIQPQAVEAWFQDVFIDSYD 404


>gi|255076443|ref|XP_002501896.1| predicted protein [Micromonas sp. RCC299]
 gi|226517160|gb|ACO63154.1| predicted protein [Micromonas sp. RCC299]
          Length = 469

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 2   KATTAMSVHLVWLR-NDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSH 59
            A T    H+VW+R  DLR+ D+  L+AA     +  ++ +F+  PE       +     
Sbjct: 64  SAPTHTGAHIVWIRVGDLRVHDHPGLHAASLLPPSVPIVPLFVFDPE--EAANTTPAFQR 121

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
            ++ ++ +++ +L  +G                 ++    +   + L   R+ E 
Sbjct: 122 LVHEAVRELRVALRDRGADLVVR----VGSPATHVERIAKETGASSLSCRRELEW 172


>gi|187478087|ref|YP_786111.1| DNA photolyase [Bordetella avium 197N]
 gi|115422673|emb|CAJ49200.1| putative DNA photolyase [Bordetella avium 197N]
          Length = 538

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 132/420 (31%), Gaps = 50/420 (11%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS 85
            AA    D +   V++A   +   H   S  +     A++      L   G   +YH+  
Sbjct: 41  AAALDGFDPEQDCVWMAEAAEESTHVWSSQPRIALFLAAMRHFAAVLQSHGWPLRYHRLD 100

Query: 86  NFDDSIEWLDSYCLQQRV---TKLFYNRQYEIN----------------EVRRDK----L 122
           +  + I    S           +L      +                  E+R D+     
Sbjct: 101 DDPEPISLAVSLRAALLALRPERLVMTAPGDWRVLQSLRAVATDMGLPLELREDRHFFST 160

Query: 123 LEKRLQHRVICKS----FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           + +   H    KS    F    L     +L    +             Q         LP
Sbjct: 161 VREFRAHARTRKSLRLEFFYRELRQRHGVLMDEGKPVGGRWNLDADNRQAFGAEGPGRLP 220

Query: 179 VPAIRLTGPVTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
            P       +T   +     RF  +P       +P+  + AL  LR+F +E++  +    
Sbjct: 221 APPRFAPDALTREVLDLVARRFAQHPGSLEAFAWPVNREQALAALRQFIEERLPLFGPYE 280

Query: 235 DI--PAIQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREF 290
           D   P       SQLS  L++ +LS R+     +  +    +  +S        L WRE+
Sbjct: 281 DALWPGEPWLYHSQLSAALNLKLLSAREVVQAAELAYRAGRVPLQSAEGFIRQILGWREY 340

Query: 291 YRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            R L     P                   D  L   +  G T    +   + Q   +G+ 
Sbjct: 341 VRGLYWTQMPGYLERNALGA---------DEALPAWYWTGQTQMACLREVLHQTLALGYA 391

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPY 405
           H+  R++ A      L V  +    ++++  +D     +L +  G  Q+A      S PY
Sbjct: 392 HHIQRLMVAGLFALLLGVRPQQLHAWYLAVYVDAVEWVELPNTLGMSQYADGGLMASKPY 451


>gi|260220873|emb|CBA28875.1| hypothetical protein Csp_A09320 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 525

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 66/411 (16%), Positives = 131/411 (31%), Gaps = 66/411 (16%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFD---DSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           I+A++  +   L   G    Y   S  +     +E +         T   Y    E +E 
Sbjct: 62  IFAAMRAMAAKLRADGHRVHYISISEPESENAMVEDIAKLVHSLAATHFEYQ---EPDEW 118

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
           R D LL +             S ++     L   L+  +++ P ++ L++ + +      
Sbjct: 119 RLDALLREYAAMA-DASGTHTSRMVSSEHFLTGRLETRQMFKPGKRWLMETMYRQMRVRH 177

Query: 178 -------------------PVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----------- 207
                                       PV P +     D+     +             
Sbjct: 178 RVLLDSDGEPEGGQWNFDAENRKAWKGDPVEPIDFRPSHDHGLLWKEIQAAEVKTFGLPG 237

Query: 208 -----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQ 258
                +P+    ALH L  F    + ++ + +D  + +      S LS  L+  +LSPR+
Sbjct: 238 ANAIRWPLDRDEALHQLEAFIAHALPHFGDYQDAMSREAKRLFHSMLSFALNTKMLSPRE 297

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
              R++  +    + P   A  ++ + L WRE+ R +            F+         
Sbjct: 298 VVGRVESAWRSGGV-PLPAAEGFIRQILGWREYVRGVYWAQMPGYESNNFL--------E 348

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
             + L + +  G T    + AA+ Q   +   H+  R++          ++      +++
Sbjct: 349 HSADLPEWFWTGKTHMACMSAAITQSLEMAHAHHIQRLMVIGNFALLAGLNPTALHAWYL 408

Query: 378 SQLLDGD----LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
              +D      L +  G  Q+A   G  + PY             D  G +
Sbjct: 409 GIYIDAFEWVELPNTVGMSQFADGGGLATKPY------VSSAAYIDRMGDY 453


>gi|168038306|ref|XP_001771642.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677081|gb|EDQ63556.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 665

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 60/198 (30%), Gaps = 20/198 (10%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            ++W ++DLR+ D+  + AA   +  +V+ V+I  P      G S      +  ++  ++
Sbjct: 1   AILWFKHDLRLDDHPGVAAAS--AYKRVLPVYIFDPYVCA--GWSKELLESLCDAVSDLR 56

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
           K L   G                 L     +   T +    + E    R    + + L+ 
Sbjct: 57  KELRLLGSDLIVLTARTEH----VLSRLAQKIGATSIITEEEVESTWQRTVHSVLESLEK 112

Query: 130 RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVT 189
                         P SI    L++ +   P         +  + ++     +R   P+ 
Sbjct: 113 E------------EPSSISETKLELDQWSAPLYDTPESASIPDNYQAFQRIGLRTLAPLP 160

Query: 190 PSNIPRFFDYPFQAIDPM 207
                            +
Sbjct: 161 SPAKFPGLPEGLTDTGSL 178


>gi|254451912|ref|ZP_05065349.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
 gi|198266318|gb|EDY90588.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
          Length = 276

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
               D   ++L   G++HN  RM  AS  +  L + WR+G ++F   LLDGD A+N   W
Sbjct: 1   MDYFDTWAQELVDTGYLHNHARMWFASIWIFTLGLPWRLGADFFYRHLLDGDAAANTLNW 60

Query: 393 QWAASTGNDSVPYF-RIFNP-TIQGKRFDP 420
           +WAA       PY  R  N     G RF+P
Sbjct: 61  RWAAGLHTRGKPYPARAQNIAAFTGGRFNP 90


>gi|15558998|gb|AAL02087.1|AF348456_1 cryptochrome 1 [Cucumis melo]
          Length = 61

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD DL S+  GWQ+ + T  DS  + RI NP ++G +FDP G ++R WLPEL+ +PT
Sbjct: 1   DTLLDADLESDALGWQYISGTLPDSREFDRIDNPQLEGYKFDPNGEYVRRWLPELSRLPT 60

Query: 438 Q 438
           +
Sbjct: 61  E 61


>gi|168060079|ref|XP_001782026.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666517|gb|EDQ53169.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 711

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 66/201 (32%), Gaps = 22/201 (10%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
           +     +VW ++DLR  D+  L  A       VI +FI     +   G S  +   ++ +
Sbjct: 2   SGKKTAIVWFKHDLRTDDHPGLAFAAQYD--HVIPLFIFDSSFYA--GCSEERLASLFDA 57

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
           +  +++SL   G      +    D     L +   +   + +    + E         + 
Sbjct: 58  VADLRRSLKSIGSTLVIRRARVND----VLLNLAQEVGASTIIAEEEVEEIWHDLVASVS 113

Query: 125 KRLQ------HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
             L        +   K ++ S+       +     +   Y  F++   + L      + P
Sbjct: 114 ASLSVKSLSGQKTEVKQWNASLY-----DVEGIEDLPDNYKEFKRMGRRVL---PPVNAP 165

Query: 179 VPAIRLTGPVTPSNIPRFFDY 199
                L   +   ++P   D+
Sbjct: 166 TSIPALPADIEEGHLPSLKDF 186


>gi|2764539|emb|CAA04246.1| cryptochrome [Mougeotia scalaris]
          Length = 188

 Score = 75.1 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 18/190 (9%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA--- 203
           +     Q +  ++ F         Q D   L  P   +  P       R  +   +    
Sbjct: 1   VYEDDGQPFTTFSQFWTRWQDMPFQPD-NPLSTPNRLVLPPAVELQSMRVDELGLEERQE 59

Query: 204 ------IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
                 +   +  G  NA   L  F +  +  Y   ++      TS LSP+L  G +  R
Sbjct: 60  KSSNALLARAWTPGWANADRSLLVFIQGPLQRYSSSKNKADKHTTSLLSPHLHFGEI-LR 118

Query: 258 QCWNRLKEEFVDLLIK------PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
                +K   +    K         G  +++  L  RE+ R+L   +P     +  +   
Sbjct: 119 TLKCTIKVRRMKAQWKSQGAEGASQGVDAFVRSLGLREYSRYLSFNFP-FTHERSLLSNL 177

Query: 312 EKIEWNKDSH 321
           +   W  D  
Sbjct: 178 KSFPWRLDEA 187


>gi|148654197|ref|YP_001274402.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus sp.
           RS-1]
 gi|148566307|gb|ABQ88452.1| deoxyribodipyrimidine photolyase-related protein [Roseiflexus sp.
           RS-1]
          Length = 508

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 126/417 (30%), Gaps = 65/417 (15%)

Query: 12  VWLRNDLRITDNKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           VW+  D  +  + A+ AA   +    +  V + +  +  Q     ++   I +++     
Sbjct: 8   VWIPGDQLLRAHPAIEAAESRSGRRNIRIVLVESDARIAQLPYQRKKIVLILSAMRHYAA 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL--- 127
           +L ++G +    +  +F    E L  +  Q R  +L      E    R        L   
Sbjct: 68  ALRERGYLVDEVRAPSF---AEGLQHHVAQHRSQRLVTMAAAEYETRRFQHETLHALLGI 124

Query: 128 -----------------------QHRVICKSFDDS------VLLPPGSILNHALQMYKVY 158
                                    RVI + F  +      VL+ P              
Sbjct: 125 PVDVLPNTQFLVGQYDPFPAIEPSQRVIMERFYRAMRRRFAVLIEPDGSPTGGE------ 178

Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQN 214
                   QN         P P I          +    D     +         +    
Sbjct: 179 ---WNFDRQNRRPLPRTVAPPPPITFEPDAITRQVMTDVDARGSGVGTATGFALAVTHAQ 235

Query: 215 ALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           A   L  F   ++  +    D  +        S LSPY++IG+L P Q     +E +   
Sbjct: 236 AEAALNDFITNRLAAFGPYEDAMSATHDVVFHSMLSPYVNIGLLEPLQMVRAAEEAYR-T 294

Query: 271 LIKPKSGAFSWLNELI-WREF-YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
              P      ++ ++I WRE+ Y       P++          +   WN    L + +  
Sbjct: 295 GAAPIQSVEGFVRQVIGWREYIYWQYWRLMPAL---------RDANAWNAMRPLPRFFWN 345

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           G T    +   +++    G+ H+  R++          +      ++F++  +D   
Sbjct: 346 GETDMRCLRHVIKRAIATGYTHHIERLMVVCNFCLLAGIRPSEVNDWFLAHYIDAYD 402


>gi|92429540|gb|ABD93514.2| DNA photolyase protein [Solanum pimpinellifolium]
          Length = 150

 Score = 74.7 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 10/140 (7%)

Query: 44  TPEQWRQHG-----ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98
            P  + +           ++ F+  S+  ++K+L  +G                 L    
Sbjct: 1   DPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVR----IGKPETVLVELA 56

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKV 157
                  ++ +R+   +EV+ +  ++  ++   +  K F  S L     +     QM   
Sbjct: 57  KAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTN 116

Query: 158 YTPFRKALIQNLVQADLRSL 177
           Y  FR+ +    V+  + +L
Sbjct: 117 YGGFREKVQGLEVRKTIEAL 136


>gi|88808546|ref|ZP_01124056.1| photolyase protein family protein [Synechococcus sp. WH 7805]
 gi|88787534|gb|EAR18691.1| photolyase protein family protein [Synechococcus sp. WH 7805]
          Length = 495

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 100/285 (35%), Gaps = 19/285 (6%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
           G +L         +  F     + L +                            PF   
Sbjct: 159 GLLLEDDGGPLGGHWSFDADNRKKLPKGISVPAEPSHRNGAEVEQARKELESEALPFIGS 218

Query: 205 DPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQ 258
              F  PI  ++A   L+ F + ++  +    D  + Q      S L+P L+IG+L+P+Q
Sbjct: 219 WEAFSYPIRHEDADRWLQTFLEYRLRDFGAYEDAISTQHRVMWHSVLTPMLNIGLLTPQQ 278

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
             +R  E   D  I P +    ++ +++ WREF   +   +        F  +       
Sbjct: 279 ILDRTLERAADGDI-PLNSLEGFIRQIVGWREFMAVMYRRHGVAMRNSNFWKF------- 330

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
           +D  +  A+    TG P ID A+    + G+ H+  R++    ++       +   ++FM
Sbjct: 331 EDRPIPDAFYTATTGLPPIDDAIGHALSSGYCHHIERLMLLGNVMLLCGFHPQRVYQWFM 390

Query: 378 SQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
              +D        +  G  Q+A      + PY    N   +   +
Sbjct: 391 ELFVDAYDWVMVPNVFGMSQFADGGLFTTKPYLSGSNYVRKMSDY 435


>gi|2370251|emb|CAA04247.1| cryptochrome [Solanum lycopersicum]
          Length = 187

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 13/188 (6%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA--- 203
           + +   +++  +  + +  +    +   +  P    +  G V   ++    D   ++   
Sbjct: 1   VYDDDGKVFTTFDAYWEKSLSIQNEPVSQLPPWRLTQAAGSVKMCSVEGVGDLENESEKS 60

Query: 204 ----IDPMFPIGEQN-ALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258
               +   +  G +  A   L +F +  +  Y + R       TS LSPYL  G +S R+
Sbjct: 61  SNALLGKGWAPGWRPIADKALTEFVESNLLAYSKDRLRVGGNSTSLLSPYLHFGEVSVRK 120

Query: 259 CWNRLKEEF----VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKI 314
            +N ++ +      +     K  A  +L  +  RE+ R++   +P     +  +      
Sbjct: 121 VFNSVRLKQILWTKEGNSVGKDSATIYLRAIGLREYSRYISLNFP-FTHERSLLNNLRFF 179

Query: 315 EWNKDSHL 322
             N D   
Sbjct: 180 PRNADQAH 187


>gi|15559004|gb|AAL02090.1|AF348459_1 cryptochrome 1b [Hordeum vulgare]
          Length = 61

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%)

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PT
Sbjct: 1   DTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPT 60

Query: 438 Q 438
           +
Sbjct: 61  E 61


>gi|15559012|gb|AAL02094.1|AF348463_1 cryptochrome 1 [Musa acuminata]
          Length = 61

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 37/61 (60%)

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD DL S+  GWQ+ + +  D     RI NP  +G +FDP G ++R WLPEL  +PT
Sbjct: 1   DTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPT 60

Query: 438 Q 438
           Q
Sbjct: 61  Q 61


>gi|326319200|ref|YP_004236872.1| deoxyribodipyrimidine photolyase-like protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323376036|gb|ADX48305.1| deoxyribodipyrimidine photolyase-related protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 526

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 69/415 (16%), Positives = 136/415 (32%), Gaps = 64/415 (15%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL AA               P++         +     +++       +  G+       
Sbjct: 95  ALRAAIRTHR----------PQRLVMTAPGDWRVWKALSAVA------ADAGLPLDTRPD 138

Query: 85  SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP 144
            +F  ++     +  Q     L   R        R +       H ++          P 
Sbjct: 139 RHFFATVREFADFRRQLGGRPL---RLETFYRAMRRR-------HGILM-----DGDRPE 183

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
           G   N+     + + P    ++    + +  +L    ++           RF D+P    
Sbjct: 184 GGAWNYDKNNRRPFGPQGPGMVPARCRFEPDALTREVLQAVS-------RRFGDHPGLLE 236

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI--PAIQ--GTSQLSPYLSIGVLSPRQCW 260
           D  +P+    ALH L  F   ++  +   +D   P       S LS  L++ ++ PR+  
Sbjct: 237 DFAWPVTRAQALHALADFVDHRLPAFGPFQDAMWPGEPWLYHSHLSAALNLKLIHPREVV 296

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
              +  +    + P + A  ++ + L WRE+ R +               + ++     D
Sbjct: 297 AATEAAYRSGKV-PLASAEGFIRQILGWREYVRGIYWT--------EMPSYRDRNALGAD 347

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
           + L   +  G T F  +  A+RQ    G+ H+  R++        L V  +    ++++ 
Sbjct: 348 APLPAWYWTGDTPFACLRQAIRQTLDHGYAHHIQRLMVTGLFALLLGVRPQAVHAWYLAV 407

Query: 380 LLDG----DLASNNGGWQWAASTGNDSVPYF-------RIFNPTIQGKRFDPQGT 423
            +D     +L +  G  Q+A      S PY        R+  P     R DP   
Sbjct: 408 YVDAVEWVELPNTLGMSQYADGGLMASKPYIATGKYIQRMGGPCTTC-RHDPDAI 461


>gi|32475188|ref|NP_868182.1| a deoxyribodipyrimidine photolyase-like protein [Rhodopirellula
           baltica SH 1]
 gi|32445729|emb|CAD78460.1| conserved hypothetical protein-putative a deoxyribodipyrimidine
           photolyase-related protein [Rhodopirellula baltica SH 1]
          Length = 566

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 131/390 (33%), Gaps = 33/390 (8%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV--TKLFYNR 110
              R+     +    ++K+LS   +              E L +   Q+ V    L  N 
Sbjct: 122 TGDRRKARESSFASVLRKTLSAHSVEKILVVAPGDYRVREQLKATAEQEDVPLEFLTDNH 181

Query: 111 QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
            Y   +   D       +  ++ + F  ++      +L+           F +   +   
Sbjct: 182 FYCSPDQFDDWA---SGRKSMVMEQFYRTMRKEHSILLDEEGAPEGGQWNFDQDNRKTFG 238

Query: 171 QADLRSLPVPAIRLTGPVTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
           +   + +P         +T   I     RF D+P +      P+   +AL+ L  F + +
Sbjct: 239 KGGPKEVPPTPSFKPDSITQEVIAMVRDRFEDHPGKVDQFDLPVCRDDALNSLDDFIEHR 298

Query: 227 VYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +  +   +D      T    S+LS  +++ +LSP++  +   + + D    P +    ++
Sbjct: 299 LPLFGTYQDAMWEGETFLYHSRLSHSINLHLLSPKEVVDAAVKAYKD-GNAPLNCVEGFV 357

Query: 283 NE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
            + L WRE+ R +           P       +  + +  +   +  G T    +  AMR
Sbjct: 358 RQILGWREYVRGVYWNR------MPDYEERNALHCDSEQDVPPFFWDGNTDMACVSDAMR 411

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAAS 397
            L    + H+  R++      +           + M+   D      L +  G  Q+   
Sbjct: 412 LLVDTAYAHHIQRLMVLGLFAQLFGTHPLRFHHWHMAMYADAIDWVSLPNALGMSQYGDG 471

Query: 398 TGNDSVPYF-------RIFNPTIQGKRFDP 420
               + PY        R+ N   +  R+DP
Sbjct: 472 GLMATKPYCATGKYINRMSN-HCKNCRYDP 500


>gi|168702415|ref|ZP_02734692.1| deoxyribodipyrimidine photolyase [Gemmata obscuriglobus UQM 2246]
          Length = 524

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 78/502 (15%), Positives = 135/502 (26%), Gaps = 100/502 (19%)

Query: 11  LVW---LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           L W    R   R+  N AL  A   +      + +    +      +AR   FI   +  
Sbjct: 22  LYWPQMFR---RLHSNHALDHALKLAGEHKKPLVVYEGLKLNYPWANARHHTFILQGMRD 78

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
             ++  + G+ +     +  D     +           +  +  Y    V       + L
Sbjct: 79  NARAAQKLGLAYWPFVETPDDPGRGLVARLSK--DAVCVVTD-DYPAYIVPAHN---RAL 132

Query: 128 QHRVIC--KSFDDSVLLPPGS----ILNHALQMYKVYTPFRKALIQNLVQADLRS----- 176
             ++       D S ++P       +   A    +++  F +A       A         
Sbjct: 133 ADKIDVPLVLVDGSSVVPLSRLGAPVAAAAHLRPRIHKLFAEAWRHRAKNAPDVPKVARS 192

Query: 177 ---LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
               P      T  +         D    A+              L  F  +K+  Y E+
Sbjct: 193 TLAPPFEPWDATQDIAKFVAGLPIDQSVPAVAGATGG-AAAGTAALEAFVSDKLPRYSEE 251

Query: 234 RDIPAIQ---GTSQLSPYLSIGVLSPRQCWNRL------------KEEFVDLLIKPKSGA 278
           R+ P        S LS YL  G +S  Q    +            K    D         
Sbjct: 252 RNAPDDPAKSAASALSAYLHYGHISIEQVTQAVLGDSWSEQEINPKTRNKDDFFCRDPNV 311

Query: 279 FSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW--------------------- 316
             +L+E + WR+   H        C  +      + + W                     
Sbjct: 312 NDFLDEAITWRDVGYHWHFRRNLECDNR--DAELKNVSWSGASSSAVPQFNFETMDFASG 369

Query: 317 ------------------------NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
                                    +  + L  ++   T  P+ +AA  +L   G +HN 
Sbjct: 370 GELTLDVVLPEWARASLKKHAGDPREHIYSLGEFEGARTHDPLWNAAQTELICTGRIHNY 429

Query: 353 LRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRI- 408
           LRM+ A             +R  E       LDG   ++  G  W     +   P  R  
Sbjct: 430 LRMLWAKKVLEWSATPADAYRTLEHLNNKYALDGRDPNSYTGIHWCFGLFDRPWPPERPV 489

Query: 409 ------FNPTIQGKRFDPQGTF 424
                  +     K+FD  G +
Sbjct: 490 FGSLRYMSSANTAKKFDLDGYY 511


>gi|159471433|ref|XP_001693861.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283364|gb|EDP09115.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 742

 Score = 73.9 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 52/178 (29%), Gaps = 16/178 (8%)

Query: 3   ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAK------------VIAVFIATPEQWRQ 50
           A +A    LVW RNDLR+ D+  L AA                   ++ +++  P++   
Sbjct: 16  AHSAAGPVLVWFRNDLRLDDHPGLTAAAAACRTGSGSGSGSGSGRALLPLYVLDPQRLSH 75

Query: 51  HGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE----WLDSYCLQQRVTKL 106
                     + ++L +++  L   G        +      E                 +
Sbjct: 76  LAYMPGGPEALSSALQRLRSELRALGSDLVVRLGAWEQQLPEAAAAAASGGGGGGGAAAV 135

Query: 107 FYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKA 164
               + E+   +  +     L  +         V     + L  A +    Y  +R  
Sbjct: 136 VTEDEVEVRYRQPAQRALAALGQQGGPAQAGGPVAFSWTAPLWPAERFDNRYRTWRDK 193


>gi|92429550|gb|ABD93519.2| DNA photolyase protein [Solanum cheesmaniae]
          Length = 130

 Score = 73.5 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 5/126 (3%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
               ++ F+  S+  ++K+L  +G                 L           ++ +R+ 
Sbjct: 6   TGPYRASFLIDSIADLRKNLQARGSDLVVR----IGKPETVLVELAKAVGAEAVYAHREV 61

Query: 113 EINEVRRDKLLEKRLQ-HRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ 171
             +EV+ +  ++  ++   +  K F  S L     +     QM   Y  FR+ +    V+
Sbjct: 62  SHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVR 121

Query: 172 ADLRSL 177
             + +L
Sbjct: 122 KTIEAL 127


>gi|219127169|ref|XP_002183813.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404536|gb|EEC44482.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 495

 Score = 73.5 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 70/451 (15%), Positives = 124/451 (27%), Gaps = 112/451 (24%)

Query: 18  LRITDNKALYAACHNSDAKVIAV--------------FIATPEQWRQHG-------ISAR 56
           LR   N A   +C  ++   + +              + A   Q R+         ++AR
Sbjct: 45  LRYQHNPAFALSCRIANQHNLPLLVLVTLLDDTHHPDYCANSTQRRKEDICYQSTVMTAR 104

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR---QYE 113
           +  F+   L +V  +    G             +   L    L +    +  +       
Sbjct: 105 RLAFLLECLQEVTHAWQSHGAAVAIRIHGPECRTPHHLT---LARSAAAIVTDEPFVDPY 161

Query: 114 INEVRRDKLLEKRLQ------------------HRVICKSFDDS-------------VLL 142
           +  V R + + + L                    R++  S  D               + 
Sbjct: 162 VTYVERVESVGRTLAKPVFRVDGSTSVAPAGQLQRIVGSSRSDDKPIILYKGVPSKAWIW 221

Query: 143 PPGSILNHALQMYKVYT--PFRKALIQNLVQADLRS----------LPVPAIRLTGPVTP 190
              +      ++  V     F    +     AD  S          LP        P   
Sbjct: 222 EKSTAPKRRGEVMGVVEEGHFDAPTLSMPSPADFLSNPSFASLYSVLPAEWKDSKIPAPG 281

Query: 191 SNIPRFFDYPFQAIDPMFP-----------------IGEQNALHILRKFCKEKVYYYVEQ 233
                  D    A    +                   G +  +     F    +  Y   
Sbjct: 282 RRPWSVADLTSIADCKAWALQWSGADSSVAPCVQTHGGARAGMKRWTVFLNHHLVKYART 341

Query: 234 RDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFY 291
           R+        S+LS YL++GV+S  Q          DL  + ++    +L+E++ WRE  
Sbjct: 342 RNNITQPHAVSRLSCYLNLGVISIFQVLF-------DLYNRDRNATEKFLDEIVKWREIG 394

Query: 292 RHLMAFYPSVCMGKPFIPWTEKI--------------EWNKDSHLLQAWKQGYTGFPIID 337
                 +P        +P   +I               W+ D+   +   +G  G  + D
Sbjct: 395 YVHCFAFPHSYAKPDVLPSWSRIHLERSCAASYGSNSSWSVDTR--RRLLEGRFGDEVWD 452

Query: 338 AAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
           A    L   G +HN  RM     +V  L V 
Sbjct: 453 AMQTYLIETGELHNNARMTWGKAIVHWLKVS 483


>gi|304314119|ref|YP_003849266.1| photolyase related protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587578|gb|ADL57953.1| photolyase related protein [Methanothermobacter marburgensis str.
           Marburg]
          Length = 481

 Score = 73.5 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 90/264 (34%), Gaps = 23/264 (8%)

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
              + +P              RF D P       +P   + A   LR F   ++  +   
Sbjct: 182 PEPIELPENSYVREARSYVAERFHDNPGSMEHFNYPTTHREAWIFLRDFTGRRLRNFGSY 241

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWR 288
           +D  +   T    S LS  L+I +L+P +               P +    ++ + + WR
Sbjct: 242 QDFISRDETFLFHSVLSSSLNICLLTPMEVLKAALSA-----DAPLNSVEGFVRQVMGWR 296

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF R +     S    + F         N    L      G TG    D A+R++   G+
Sbjct: 297 EFIRAVYILRGSYQRTRNFF--------NHRGKLNHKMYLGNTGLEPYDTAVRRVLRHGY 348

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVP 404
            H+  R++    L+  L  D      +FM   +D        +  G  Q+A      + P
Sbjct: 349 THHIERLMVIGNLMLLLGTDPDEVYRWFMEMFIDSYDWVMVPNVYGMSQYADGGLMATKP 408

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428
           Y    N  ++      +G + R W
Sbjct: 409 YISSSNYILRMSDH-ARGDWCRVW 431


>gi|289622018|emb|CBI51196.1| unnamed protein product [Sordaria macrospora]
          Length = 178

 Score = 73.5 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 53/172 (30%), Gaps = 28/172 (16%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAAC----HNSDAKVIAVFIATPEQWRQHGI------- 53
           T   V +  LR DLR++DN   +       ++  + +I V++    Q    G        
Sbjct: 2   TQSKVVIYVLRRDLRLSDNPIFHHLANPDSNHGFSHLIPVYVFPAPQIDLSGFLPEGGEI 61

Query: 54  ---------------SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC 98
                             ++ F+  S+  ++ SL   G        +        +D   
Sbjct: 62  PRPAPKSAVGGYARCGPYRAKFLAESVWDLKTSLQSNGSDLLVRVGTYTGAVKSLVDGLK 121

Query: 99  -LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGSIL 148
             +  V  ++        E   +K +     +  I  K +DD        +L
Sbjct: 122 AKECPVGAVWMTSHEGSEEKNDEKAVASFCANSGIDFKLWDDEKYFIHEQVL 173


>gi|260431371|ref|ZP_05785342.1| photolyase protein family protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415199|gb|EEX08458.1| photolyase protein family protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 471

 Score = 73.1 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 22/277 (7%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPV---PAIRLTGPVTPSNIPRFFDYPFQA 203
           +L  + Q       F +   + + +A L SLP    P          +++   F     +
Sbjct: 136 VLMDSGQPVGGQWSFDEENRKKVPKALLGSLPWIDWPVHDAVDEAAKASVIADFPDALGS 195

Query: 204 IDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQ 258
           +D ++ P   + A   L +F + +  ++ +  D           + L+P L+IG+L+P+Q
Sbjct: 196 LDTLYYPTSHEAASDWLGQFLERRFEHFGDYEDAIVEGENWLWHAVLTPALNIGLLTPKQ 255

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
             +       D    P +    ++ ++I WREF R   A Y S+      +P      W 
Sbjct: 256 VLDAALAH-ADRKGIPLNSVEGFIRQIIGWREFMR---ATYESL-----GVPMRTTNHWG 306

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
               + +++  G TG   +D  ++++   G+ H+  R++     +    +D      +FM
Sbjct: 307 HHRPMPRSFYDGTTGIDPLDDTIKRVLQTGYCHHIERLMVLGGFMFLCEIDPDHVYRWFM 366

Query: 378 SQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFN 410
              +D        +     Q A      + PYF   N
Sbjct: 367 EMFVDSYDWVMVPNVYAMSQHADGGLITTKPYFSGSN 403


>gi|15559014|gb|AAL02095.1|AF348464_1 cryptochrome 2 [Musa acuminata]
          Length = 61

 Score = 73.1 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD DL S+  GWQ+ + +  D     R+ NP + G+++DP G +IR+W+PEL  +PT
Sbjct: 1   DTLLDADLESDILGWQYVSGSLPDGHELKRLDNPEVLGQKYDPDGEYIRNWIPELARLPT 60

Query: 438 Q 438
           +
Sbjct: 61  E 61


>gi|312091466|ref|XP_003146989.1| DNA photolyase 1 [Loa loa]
 gi|307757849|gb|EFO17083.1| DNA photolyase 1 [Loa loa]
          Length = 261

 Score = 73.1 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 75/220 (34%), Gaps = 28/220 (12%)

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
           +  F    +  Y ++R+IP  +  S LSPY+  G+L+P    N +K+        PKS  
Sbjct: 1   MDYFIANNLKAYDKERNIPNGKKQSLLSPYMHFGMLNPITIVNEVKQ-----SKAPKSAK 55

Query: 279 FSWLNELIWREFYRHLMAFY-----------PSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
            ++L E++ R    H   +Y           P            +K E+  +   L   +
Sbjct: 56  DAFLEEMVVRRELAHNFVYYYRDTYDTFDCLPEWAKKTMEEHRFDKREYIYNYKEL---E 112

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGD 384
           +G T     +AA  +L     M   LRM  A        D    +    E      LDG 
Sbjct: 113 EGRTHDVYWNAAQFELVFTHKMSGYLRMYWAKKVIEWSPDYERAYAFLIEQNDKYELDGR 172

Query: 385 LASNNGGWQWAASTGNDSV------PYFRIFNPTIQGKRF 418
             +   G  W     + +          R        ++F
Sbjct: 173 DPNGYCGVMWNFGIHDRAHANRPVFGKIRYMCADGLRRKF 212


>gi|220913287|ref|YP_002488596.1| deoxyribodipyrimidine photolyase-related protein [Arthrobacter
           chlorophenolicus A6]
 gi|219860165|gb|ACL40507.1| deoxyribodipyrimidine photolyase-related protein [Arthrobacter
           chlorophenolicus A6]
          Length = 537

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 88/243 (36%), Gaps = 20/243 (8%)

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLS 250
            F D P       +P     A   L +F ++++  +    D  +          L+P L+
Sbjct: 241 EFPDAPGDPASFAWPTDAPEARRHLEEFVRDRLAGFGAYEDAISAAHPFINHGLLTPALN 300

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIP 309
           IG+L PR+  + + +        P +    ++ +LI WRE+ R               + 
Sbjct: 301 IGLLDPREVLDSVLD--GAGQDTPLASLEGFVRQLIGWREYMRATYRLRGRQMRSSNLL- 357

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                  N  + L   W    TG   +D  + ++   G+ H+  R++     +  L +  
Sbjct: 358 -------NHGNRLGTGWWDAATGLAPVDMVISRVLATGYSHHIERLMILGNAMSLLRIHP 410

Query: 370 RIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
               E+FM+  +D        +     Q+A+  G  + PY    N   +     P G +I
Sbjct: 411 HDVYEWFMAMYVDAYDWVMVPNVYAMSQFASGAGITTKPYVSGSNYLRKMSDLPP-GEWI 469

Query: 426 RHW 428
             W
Sbjct: 470 ADW 472


>gi|262195259|ref|YP_003266468.1| deoxyribodipyrimidine photolyase-related protein [Haliangium
           ochraceum DSM 14365]
 gi|262078606|gb|ACY14575.1| deoxyribodipyrimidine photolyase-related protein [Haliangium
           ochraceum DSM 14365]
          Length = 519

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 84/198 (42%), Gaps = 16/198 (8%)

Query: 195 RFFDYPFQAIDPMF--PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPY 248
           RF D+P +  +  +  P   + AL  LR F  E++  +    D  + +G     S LSP 
Sbjct: 220 RFADHPGELSEAGWWLPSTRRQALAWLRGFLDERLERFGAYEDALSTRGPVLFHSVLSPL 279

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPF 307
           L++G+++P +   R      D  + P +    +L ++I WREF R +   +         
Sbjct: 280 LNLGLITPDEVVERTLAHAEDHRV-PLNSLEGFLRQIIGWREFVRGVYRGHSEQQETAN- 337

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                   W     +   W    TG   +D A+ ++  +GW H+  R++    L+    +
Sbjct: 338 -------AWGHHRRMKPCWWDASTGLRPLDDAIAKVLRMGWAHHIERLMVLCNLMNLCEI 390

Query: 368 DWRIGEEYFMSQLLDGDL 385
           + R   ++F++  +D   
Sbjct: 391 EPRQVHDWFLAMFVDAAD 408


>gi|327540311|gb|EGF26897.1| Deoxyribodipyrimidine photolyase-related protein [Rhodopirellula
           baltica WH47]
          Length = 513

 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 131/390 (33%), Gaps = 33/390 (8%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV--TKLFYNR 110
              R+     +    ++K+LS   +              E L +   Q+ V    L  N 
Sbjct: 69  TGDRRKARESSFASVLRKTLSAHSVEKILVVAPGDYRVREQLKATAEQEDVPLEFLTDNH 128

Query: 111 QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV 170
            Y   +   D       +  ++ + F  ++      +L+           F +   +   
Sbjct: 129 FYCSPDQFDDWA---SGRKSMVMEQFYRTMRKEHSILLDEEGAPEGGQWNFDQDNRKTFG 185

Query: 171 QADLRSLPVPAIRLTGPVTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
           +   + +P         +T   I     RF D+P +      P+   +AL+ L  F + +
Sbjct: 186 KGGPKEVPPTPSFKPDSITQEVIAMVRDRFEDHPGKVDQFDLPVCRDDALNSLDDFIEHR 245

Query: 227 VYYYVEQRDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +  +   +D      T    S+LS  +++ +LSP++  +   + + D    P +    ++
Sbjct: 246 LPLFGTYQDAMWEGETFLYHSRLSHSINLHLLSPKEVVDAAVKAYED-GTAPLNCVEGFV 304

Query: 283 NE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMR 341
            + L WRE+ R +           P       +  + +  +   +  G T    +  AMR
Sbjct: 305 RQILGWREYVRGVYWNR------MPDYEERNALHCDSEQDVPPFFWDGNTDMACVSDAMR 358

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAAS 397
            L    + H+  R++      +           + M+   D      L +  G  Q+   
Sbjct: 359 LLVDTAYAHHIQRLMVLGLFAQLFGTHPLRFHHWHMAMYADAIDWVSLPNALGMSQYGDG 418

Query: 398 TGNDSVPYF-------RIFNPTIQGKRFDP 420
               + PY        R+ N   +  R+DP
Sbjct: 419 GLMATKPYCATGKYINRMSN-HCKNCRYDP 447


>gi|15679764|ref|NP_276882.1| hypothetical protein MTH1776 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622906|gb|AAB86242.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 491

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 140/444 (31%), Gaps = 57/444 (12%)

Query: 20  ITDNKALYAACHNSDAKVI--AVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI 77
           + D+ A   A   S   ++   +F   P    +      +     AS+      L  +G+
Sbjct: 17  LEDHPA---AGKTSGFILVEDQLFFGDPVFGLRFHK--NKLVLHRASMRYYHDHLKSRGL 71

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS-- 135
             +Y Q S         D     +   +++     +     R K L   L   +      
Sbjct: 72  KAEYIQYSPDPHMGYLRDHL---EGYDRVYTLELLDHELEARMKKLSMELGLEITEIEAP 128

Query: 136 -----------FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
                      F D   L     +    ++  +    R A  +     + R    P +++
Sbjct: 129 FIFRRNLMDGYFRDGRFLLRSFYIRERKRLSILMENSRPAGGKWTFDTENRKRMPPDLQV 188

Query: 185 TGPVTPSN-----------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
             PV                 +F D P       +P     A   L+ F + ++  +   
Sbjct: 189 PAPVKLPENEYVQEAKEYVSEKFPDNPGSMDRFNYPTTHTEARIFLKDFIERRIKNFGSY 248

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWR 288
           +D  +   T    S LS  L+I +L+P +    + +        P +    ++ + + WR
Sbjct: 249 QDFISRDETFLFHSVLSSSLNICLLTPMEVIRAVLKA-----DAPLNSIEGFVRQVMGWR 303

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           EF R +          + F         N    L      G TG    D A+ ++   G+
Sbjct: 304 EFIRAVYILKGPYERTRNFF--------NHRGKLNPKLSHGETGIDPYDIAVGRVLGHGY 355

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVP 404
            H+  R++    L+  L  D      +FM   +D        +  G  Q+A      + P
Sbjct: 356 THHIERLMVIGNLMLLLGTDPDEVYRWFMEMFIDAYDWVMVPNVYGMSQYADGGLIATKP 415

Query: 405 YFRIFNPTIQGKRFDPQGTFIRHW 428
           Y    N  ++      +G + R W
Sbjct: 416 YISSSNYILRMSDHR-RGDWCRVW 438


>gi|258405943|ref|YP_003198685.1| deoxyribodipyrimidine photolyase-like protein [Desulfohalobium
           retbaense DSM 5692]
 gi|257798170|gb|ACV69107.1| deoxyribodipyrimidine photolyase-related protein [Desulfohalobium
           retbaense DSM 5692]
          Length = 502

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 95/284 (33%), Gaps = 19/284 (6%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAID 205
           +L+   +       F  A  +    +  +  LP              +   F       D
Sbjct: 160 LLDDHGKPLGGKWTFDTANRKRYRGEPPVPDLPHLTGGPEKDSALDRVRNEFANHPGEPD 219

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWN 261
              P     A   L  F   ++  +   +D  + +      S L+  L+IG+L+P Q  +
Sbjct: 220 LTMPWTHAQAQAWLEDFVDRRLPSFGPFQDALSSKEPFLFHSLLASSLNIGLLTPNQVLD 279

Query: 262 RLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
            +  +     + P +    ++ + L WREF R +   +        F        W    
Sbjct: 280 TVLAKHRQSPL-PLASLEGFVRQILGWREFVRGMYRHHGRRQRSTNF--------WGHSR 330

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
            L +A+    TG P +D A+++  +  + H+  R++     +    +       +FM   
Sbjct: 331 PLPEAFYTASTGIPPVDLAIQRALSNAYCHHIERLMVLGNFMLLCEIAPDDICTWFMEMC 390

Query: 381 LDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           +D        +  G  Q+A      S PY    N   +   F P
Sbjct: 391 IDSYDWVMVPNVYGMSQYADGGLMSSKPYISSSNYIRKMSDFSP 434


>gi|282896501|ref|ZP_06304521.1| hypothetical protein CRD_01303 [Raphidiopsis brookii D9]
 gi|281198607|gb|EFA73488.1| hypothetical protein CRD_01303 [Raphidiopsis brookii D9]
          Length = 511

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/412 (14%), Positives = 137/412 (33%), Gaps = 48/412 (11%)

Query: 7   MSVHLVWLRNDLRITDNKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
           M++ + W+  D     + AL           +I   I +    ++     ++   +++++
Sbjct: 1   MTIGI-WILGDQLSFHHPALQELTIKRHQISIIL--IESMAYAQERPYHRQKLVLVWSAM 57

Query: 66  LQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF------------------ 107
               + L Q+G    Y   + F      L ++     +T+L+                  
Sbjct: 58  RHFARELGQQGWQVTYEIAAEFS---SALTNWQQTHNITELWIMEPGDRPFIQFINQLNL 114

Query: 108 -YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP---PGSILNHALQMYKVYTPFRK 163
             +  +  N +   K  E     R   +   +          ++L    +          
Sbjct: 115 TCSIHWLPNNLFLWKESEFTQWARGRKRLLLEDFYREGRKRFNVLMKEGKPVGGQ----W 170

Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPS-----NIPRFFDYPFQAIDP-MFPIGEQNALH 217
            L +   +   +SL  P+     P   +     ++   F + +  +D   + +    +  
Sbjct: 171 NLDKQNRKPPKKSLASPSALWFPPDPTTQEVITHVRNHFPHGYGEVDTFKWAVTRSQSRR 230

Query: 218 ILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
           +L  F +  +  +   +D           S LSPYL++G+L P +    ++EE+    + 
Sbjct: 231 VLSHFLETHLPDFGPYQDAMVTGEDTLWHSLLSPYLNLGLLHPMEVIQAVQEEYNKHQLN 290

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGF 333
             S        L WRE+ R +  +     +      W +      +  L   +  G T  
Sbjct: 291 LNSVEGFIRQILGWREYMRGVYMYESKRDLNYTQRNWFD-----HNQPLPHWFWTGITDL 345

Query: 334 PIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
             +   + Q++  G+ H+  R++  S     L    +   ++F +  +D   
Sbjct: 346 NCLHQTLEQIHRTGYAHHIQRLMLLSNFNLVLGTSPQSVVDWFHAVFIDAYD 397


>gi|15559006|gb|AAL02091.1|AF348460_1 cryptochrome 2 [Hordeum vulgare]
          Length = 61

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD D  S+  GWQ+ +    D     R+ NP +QG+++DP G ++R W+PEL  +P 
Sbjct: 1   DVLLDADRESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPDGEYVRTWIPELARMPG 60

Query: 438 Q 438
           +
Sbjct: 61  E 61


>gi|115480339|ref|NP_001063763.1| Os09g0532700 [Oryza sativa Japonica Group]
 gi|52075945|dbj|BAD46025.1| deoxyribodipyrimidine photolyase family protein-like [Oryza sativa
           Japonica Group]
 gi|52077228|dbj|BAD46272.1| deoxyribodipyrimidine photolyase family protein-like [Oryza sativa
           Japonica Group]
 gi|113631996|dbj|BAF25677.1| Os09g0532700 [Oryza sativa Japonica Group]
          Length = 695

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 75/218 (34%), Gaps = 11/218 (5%)

Query: 13  WLRNDLRITDNKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKS 71
           W ++DLR+ D+  L AA        V+ +++         G S      +  +L  ++  
Sbjct: 49  WFKHDLRVDDHPGLAAAVAAEPRRPVLPLYVFDRRILD--GYSDTMLELLLFALEDLKMV 106

Query: 72  LSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRV 131
           L  +             ++ + +     + +   +F   + E         +E  L +  
Sbjct: 107 LKSQESDLLIG----LGNAEDVVLKLVNEVQAGLIFTEEEVEYRVRNVLASVESSLSNAS 162

Query: 132 ICKSFDDSVLLPPGSILN--HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-TGPV 188
                   +++   S+ +  +  ++   +  F K  +         SLP   I + TG +
Sbjct: 163 FLSGNPPEIVVWSASLYDYKNPRELSTSHNQFLKEKLPMNTPLAAPSLPALNIEIETGSL 222

Query: 189 TPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKE 225
                 + F    +  +  + P+   +A  IL+K   +
Sbjct: 223 PTLEELKGFLKESRTSENNWVPLKGTSARSILKKTLSQ 260


>gi|167009786|ref|ZP_02274717.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 133

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 88  DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSVLLPPGS 146
           D+ +E +     +  +T  ++NR Y+   + RD  +++ L QH++   SF+ S+L+ P  
Sbjct: 17  DNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQFLQQHKINVNSFNGSLLIEPWQ 76

Query: 147 ILNHALQMYKVYTPFRKALIQ 167
                   YKVYTPF K LI+
Sbjct: 77  CKKDDGTHYKVYTPFYKELIK 97


>gi|87303557|ref|ZP_01086340.1| deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           WH 5701]
 gi|87281970|gb|EAQ73933.1| deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           WH 5701]
          Length = 504

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 21/224 (9%)

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSI 251
           F  +P    +   P     A   L++F ++++  +    D           S LSP L+I
Sbjct: 213 FAAHPGVLGELWIPFDHAGADAWLQRFLQDRLEGFGPYEDALSARLGTLHHSLLSPLLNI 272

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPK----SGAFSWLNELI-WREFYRHLMAFYPSVCMGKP 306
           G+LSP                  +    +    +L ++I WREF R +   +      + 
Sbjct: 273 GLLSPAGVIEATLAHVQRRQNGEQPVPIASLEGFLRQVIGWREFVRGIDRVHGETQASRN 332

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           F        WN    L   W  G TG P +DAA+ +LN  G+ H+  R++  S L+    
Sbjct: 333 F--------WNHRRRLAPCWTDGSTGLPPLDAAIERLNRTGYNHHIERLMVISNLMLLCE 384

Query: 367 VDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYF 406
           +     + +FM + LD        +  G  Q +      + PY 
Sbjct: 385 IHPAEVQRWFMERYLDSYEWVMGPNVYGMGQMSDGGIFATKPYI 428


>gi|15559000|gb|AAL02088.1|AF348457_1 cryptochrome 2 [Cucumis melo]
          Length = 61

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD DL S+  GWQ+ + +  D     R+ +P IQG ++DP G +IRHWLPEL  +PT
Sbjct: 1   DTLLDADLESDILGWQYISGSLPDGHELERLDDPQIQGSKYDPDGEYIRHWLPELARMPT 60

Query: 438 Q 438
           +
Sbjct: 61  E 61


>gi|15559002|gb|AAL02089.1|AF348458_1 cryptochrome 1a [Hordeum vulgare]
          Length = 61

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPT 437
             LLD DL S+  GWQ+ + +  DS     I NP ++G +FDP G ++R WLPEL  +PT
Sbjct: 1   DTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDPHGEYVRRWLPELARLPT 60

Query: 438 Q 438
           +
Sbjct: 61  E 61


>gi|120613151|ref|YP_972829.1| deoxyribodipyrimidine photolyase-like protein [Acidovorax citrulli
           AAC00-1]
 gi|120591615|gb|ABM35055.1| deoxyribodipyrimidine photolyase-related protein [Acidovorax
           citrulli AAC00-1]
          Length = 533

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 67/414 (16%), Positives = 136/414 (32%), Gaps = 64/414 (15%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL AA               P +         +     +++       +  G+  +    
Sbjct: 102 ALRAAIRTHR----------PRRLVMTAPGDWRVWKALSAVA------ADAGLPLETRPD 145

Query: 85  SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPP 144
            +F  ++     +  Q     L   R        R +       H ++          P 
Sbjct: 146 RHFFATVREFADFRRQLAGRPL---RLETFYRAMRRR-------HGILM-----DGRQPE 190

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
           G   N+     + + P    ++    + +  ++    +++          RF D+P    
Sbjct: 191 GGAWNYDKDNRRPFGPQGPGMVPGRCRFEPDAITREVLQMVA-------RRFGDHPGALE 243

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDI--PAIQ--GTSQLSPYLSIGVLSPRQCW 260
              +P+    ALH L  F   ++  +   +D   P       S LS  L++ ++ PR+  
Sbjct: 244 SFAWPVTRAQALHALADFVDHRLPAFGPFQDAMWPGEPWLYHSHLSAALNLKLIHPREVV 303

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
              +  +    + P + A  ++ + L WRE+ R +               + ++     D
Sbjct: 304 AATEAAYRSGRV-PLASAEGFIRQILGWREYVRGIYWT--------EMPSYRDRNALGAD 354

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
           + L   +  G T F  +  A+RQ    G+ H+  R++        L V  +    ++++ 
Sbjct: 355 APLPAWYWTGDTPFACLRQAIRQTLDHGYAHHIQRLMVTGLFALLLGVRPQAVHAWYLAV 414

Query: 380 LLDG----DLASNNGGWQWAASTGNDSVPYF-------RIFNPTIQGKRFDPQG 422
            +D     +L +  G  Q+A      S PY        R+  P     R DP  
Sbjct: 415 YVDAVEWVELPNTLGMSQYADGGLMASKPYIATGKYIQRMGGPCATC-RHDPDA 467


>gi|302343405|ref|YP_003807934.1| deoxyribodipyrimidine photo-lyase [Desulfarculus baarsii DSM 2075]
 gi|301640018|gb|ADK85340.1| Deoxyribodipyrimidine photo-lyase [Desulfarculus baarsii DSM 2075]
          Length = 492

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 70/214 (32%), Gaps = 25/214 (11%)

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKE------EFVDLLI 272
           L +F    +  Y + R+ PA    S LSPYL  G ++  Q +  L +      + V    
Sbjct: 247 LARFLGRGLALYDQLRNQPAEDVGSGLSPYLHFGHIAAHQVFAALADVEGWSPQRVGGPA 306

Query: 273 KPKSGAFSWLNE---------LIWREFYRHLMAFYPSVCMGKPFIPWT-------EKIEW 316
           K     +  L+          + WRE   +     P        +P            + 
Sbjct: 307 KGARQGWWGLSPTAEAFADQFITWRELGYNFCHHRPGQEGKLESLPDWAGQTLAAHAADP 366

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE--- 373
               + L+  +   T   I +AA  QL   G +HN LRM+    ++       +      
Sbjct: 367 RPYVYDLERLETARTHGAIWNAAQNQLRQEGRIHNYLRMLWGKKILHWTETPAQALAIMV 426

Query: 374 EYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFR 407
                  LDG   +++ G  W     +      R
Sbjct: 427 HLNDRWALDGRDPNSHSGIMWCLGRYDRPWGPER 460


>gi|167895132|ref|ZP_02482534.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 7894]
          Length = 69

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 1  MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
          M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 1  MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW- 58

Query: 61 IYASLLQVQKS 71
          ++ SL  +  +
Sbjct: 59 LHGSLRALGAA 69


>gi|158338785|ref|YP_001519962.1| deoxyribodipyrimidine photolyase-like protein [Acaryochloris marina
           MBIC11017]
 gi|158309026|gb|ABW30643.1| deoxyribodipyrimidine photolyase-related protein, putative
           [Acaryochloris marina MBIC11017]
          Length = 486

 Score = 70.8 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 141/417 (33%), Gaps = 43/417 (10%)

Query: 38  IAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD--------- 88
           I+  I  P  +RQ+    ++     AS+      L  +GI  QY +  + +         
Sbjct: 23  ISFLIEEPLFFRQYPFHQKKIILHRASMKSYGDRLQTQGITAQYLESHDLESSSTVFAIL 82

Query: 89  -------DSIEWLDSYCLQQRV--TKLFYNRQ----YEINEVRRDKLLEKRLQHRVICK- 134
                    I  +    L+QR+    L ++ Q       N + +   LE  L      + 
Sbjct: 83  KSQGIRCAHICEVTDDWLEQRINKAALTFDIQLYWYPTPNFLTQTSALESLLPTNKSLRM 142

Query: 135 -SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR-LTGPVTPSN 192
            SF        G +L+    +   ++       +   + +L  +  PA            
Sbjct: 143 NSFYIKQRQRLGILLDGEGPVGGKWSYDADNRKRLPQKIELPRIQWPAANTYVKEAVIYT 202

Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPY 248
              F   P  +   ++PI   +A+  L +F + ++  Y   +D      +    S L+P 
Sbjct: 203 QQHFASNPGSSHGFVYPIDHDSAVQFLYQFLETRIDQYGAYQDAIDTNQSYLFHSVLTPA 262

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPF 307
           L+IG+L P +      +   +  I P +    ++ ++I WRE+ R +            F
Sbjct: 263 LNIGLLHPEEIVQATLDRHAERPI-PLNSLEGFIRQVIGWREYVRGVYLLKGRTQRTTNF 321

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
                 I  +        +    T     D+AM ++    + ++  R++  S L      
Sbjct: 322 FQHQRPIPED--------FWDANTDILPFDSAMARVLDNSYANHIERLMVFSNLFLLCEF 373

Query: 368 DWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
           D      +F S  +D        +  G  Q+A      + PY    N   +   F P
Sbjct: 374 DPDQVYRWFSSLFIDAFDWVMVPNVYGMGQYADGGLMITKPYVSSSNYLRKMSYFKP 430


>gi|15789886|ref|NP_279710.1| hypothetical protein VNG0705C [Halobacterium sp. NRC-1]
 gi|169235607|ref|YP_001688807.1| hypothetical protein OE2049R [Halobacterium salinarum R1]
 gi|10580288|gb|AAG19190.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726673|emb|CAP13459.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 503

 Score = 70.8 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 117/398 (29%), Gaps = 37/398 (9%)

Query: 34  DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93
           D     + I      R+     ++   ++A++   +  L   G+   Y +   F   ++ 
Sbjct: 20  DDPDRVLLIEAAALARRRRYHPQKLCMVFAAMRHFRDELRDDGVDVVYERAETFGAGLDA 79

Query: 94  L------DSYCLQQRVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICKSFDDSVLLPP-- 144
                  D   +Q+       +R  E +        +    Q R     FDD +   P  
Sbjct: 80  YFDAHPGDDLVVQRPANHGTADRLRELVAARGGSLRVVANAQFRCSPAQFDDWMGTEPPF 139

Query: 145 -------------GSILNHALQMYKV-YTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                        G ++          ++   +       + D  S+         P   
Sbjct: 140 KHRPFYRHMRRETGYLMRDDDTPEGGDWSYDDQNQETPPAEYDSPSVGGFEYDEHVPAVR 199

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLS 246
             +   FD         +P+  + A   L  F  +++  +    D           S LS
Sbjct: 200 DWVATEFDTWGDPDGFDWPVTREQATRALESFVADRLAGFGPYEDAVLADDWHLEHSLLS 259

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFY-PSVCMG 304
             ++IG+L P +  +   + +      P +    ++ +LI WREF RH+     P +   
Sbjct: 260 AAVNIGLLHPEEVADAALDAYRSRDDIPLNSIEGFVRQLIGWREFMRHVYRHQMPGLATA 319

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
                  +                G        AA R +   G+ H+  R++  S     
Sbjct: 320 NQLGADRDLPPLYWTPTATDMACLGS-------AAGR-VYDRGYAHHIERLMVLSNFALT 371

Query: 365 LLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
                +   E+F    +D              S G D+
Sbjct: 372 YGARPQALTEWFHGGFVDAYDWVVTPNVVGMGSFGTDA 409


>gi|186683798|ref|YP_001866994.1| deoxyribodipyrimidine photolyase-related protein [Nostoc
           punctiforme PCC 73102]
 gi|186466250|gb|ACC82051.1| deoxyribodipyrimidine photolyase-related protein [Nostoc
           punctiforme PCC 73102]
          Length = 503

 Score = 70.8 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 57/393 (14%), Positives = 130/393 (33%), Gaps = 47/393 (11%)

Query: 24  KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
            AL +  H  +  VI   I +    +      ++   +++++    + L Q      Y  
Sbjct: 21  AALQSCLHQENVPVIL--IESLRHVQVRPYHRQKLVLLWSAMRHFAQELRQLKYSVTYKI 78

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP 143
             +F+     L  +  + ++T+L   R    N++   ++++       I    ++  L  
Sbjct: 79  AEDFETP---LQEWIKENQITQL---RVMTPNDLPFTQIIQSLELLCTITLIPNNHFLWS 132

Query: 144 PGSILNHALQMYKVYTP--FRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
                N A    ++     +R+   +  +  +          L          +    P 
Sbjct: 133 TEEFNNWASGRKRLLMEDFYREGRRRFQILMEKDKPVGGKWNLDKENRQPPKGKLNTPPT 192

Query: 202 QAIDP-------------------------MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           Q  +                           + I  Q AL +L  F + ++ ++   +D 
Sbjct: 193 QWFESDEITLDVIAQVNSLTCPTYGEIKPFRWGINRQQALQVLDWFIQNRLPHFGPYQDA 252

Query: 237 P----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
                     + LSPYL+IG+L P +    +++ +    + P +    ++ +++    Y 
Sbjct: 253 MVTGEETMWHALLSPYLNIGLLQPMEVIQAVQQAYFQQQL-PLNSVEGFIRQVLGWREYM 311

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           H +  Y  V        W      N    L   +  G T    +   + Q+   G+ H+ 
Sbjct: 312 HGIYHY--VDADYSNKNWF-----NHTQPLPDFFWTGRTEMNCLHQILTQVERTGYAHHI 364

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
            R++  S       +  +  E +F +  +D   
Sbjct: 365 QRLMVLSNFALIAGLSPQSVENWFHAVFIDAYD 397


>gi|163846035|ref|YP_001634079.1| deoxyribodipyrimidine photolyase-like protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222523765|ref|YP_002568235.1| deoxyribodipyrimidine photolyase-related protein [Chloroflexus sp.
           Y-400-fl]
 gi|163667324|gb|ABY33690.1| deoxyribodipyrimidine photolyase-related protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222447644|gb|ACM51910.1| deoxyribodipyrimidine photolyase-related protein [Chloroflexus sp.
           Y-400-fl]
          Length = 497

 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 59/391 (15%), Positives = 116/391 (29%), Gaps = 51/391 (13%)

Query: 23  NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82
           +  L A           V I +  +  Q     R+   I +++      L   G      
Sbjct: 19  HPGLVAGRR-------VVMIESLARLNQRPYHRRKLVLIISAMRHYAGELRAAGYEVDLR 71

Query: 83  QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL 142
              +F   +  L  +     V  L      E +  +  + LE  L   +      +++ L
Sbjct: 72  SAPDF---LSGLRDHVATFGVRHLICMAAAEYDTRQFQQRLEHDL--GIPVTMLPNTLFL 126

Query: 143 PPGSILNHALQMYKVYTP-------------------FRKALIQNLVQADLRSLPVPAIR 183
                   +  + + +                           +N  + D R +P P   
Sbjct: 127 VERHPPTRSPALMEPFYRAMRRQTGLLIEPDGEPTGGVWNLDHENRRRYDGRPVPAPVRF 186

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPM----FPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
               +T   I         AI        P+    AL  L  F   ++  +    D  + 
Sbjct: 187 PADTITQQVIADLARSCPNAIGSADDFDLPVTRAQALVALDDFIAHRLADFGPFEDAMSA 246

Query: 240 QG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREF-YRH 293
                  SQLSP L+IG+L P +        +      P +    ++ ++I WRE+ Y  
Sbjct: 247 DHDLLFHSQLSPLLNIGLLDPLETATAAVAAYH-AGKAPLASVEGFVRQIIGWREYIYYR 305

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
                P +              W  +  L   +  G T    +   ++++   G+ H+  
Sbjct: 306 YWELMPDLLSANA---------WQAERPLPGWYWHGETRMHCLSCVIKKVLRSGYCHHIE 356

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           R++          +  +    +F+   +D  
Sbjct: 357 RLMVLCNFALLAGIRPQEVNAWFLECYIDAY 387


>gi|34147967|gb|AAQ62559.1| cryptochrome 1 [Ovis aries]
          Length = 161

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 19/149 (12%)

Query: 148 LNHALQMYKVYTPFRKALIQNLV-QADLRSLPVPAI------RLTGPVTPSNIPR----- 195
           L+  +++     P      Q L+ + +   +PV  I      + T P++  +  +     
Sbjct: 10  LDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVMEKCTTPLSDDHDEKYGVPS 69

Query: 196 FFDYPFQA---IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPY 248
             +  F        ++P GE  AL  L +  + K +    +R            + LSPY
Sbjct: 70  LEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPY 129

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
           L  G LS R  + +L + +  +       
Sbjct: 130 LRFGCLSCRLFYFKLTDLYKKVKKNSSPP 158


>gi|149927057|ref|ZP_01915315.1| hypothetical protein LMED105_09387 [Limnobacter sp. MED105]
 gi|149824278|gb|EDM83498.1| hypothetical protein LMED105_09387 [Limnobacter sp. MED105]
          Length = 513

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 62/447 (13%), Positives = 132/447 (29%), Gaps = 70/447 (15%)

Query: 23  NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82
           N AL A   N       + + +P +     +   +     +++    + L + G    Y 
Sbjct: 19  NPALLA---NPPKSADILMVESPVESTVVWVHKVRVALFLSAMRHFAEELRKAGYTVHYR 75

Query: 83  QCSNFD--DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRLQHRVICKSFDDS 139
              +    +    + + C Q   T +      E  E R ++  L+      +  +  +D+
Sbjct: 76  SLRDTGQNNLTTEVANLCKQHGYTSI---DMAEPGEWRLEQEFLKFAKSENLKLRLLEDT 132

Query: 140 VL------LPPGSILNHALQMYKVYTPFRKALIQNLVQADL------------------- 174
                       +     ++M   Y   RK     +   +                    
Sbjct: 133 HYLCSRSEFAKWASGYKQMRMEYFYREMRKRTGVLMEGVEPAGGKWNFDADNRSAFPKAG 192

Query: 175 -----RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYY 229
                         +T  V       F D+P    +  +P+    AL  L  F + +   
Sbjct: 193 PGDITPPAFFEPDEITQAVFAEVEENFPDHPGTLKNFAWPVTRTQALQALDNFIENRFAN 252

Query: 230 YVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNEL 285
           +   +D           S +S  +++ +L P +   + +  +    +   S        L
Sbjct: 253 FGTYQDAMWTNTPFGWHSLVSSSINLHLLHPLEVIQKAEAAYRAGKVDVASAEGFIRQIL 312

Query: 286 IWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
            WREF R +     P +          +  +W            G T    +  ++ Q  
Sbjct: 313 GWREFMRGVYWLDMPKMREDNYLQAKLDLPKWFW---------TGNTHMNCLKDSIGQTL 363

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGN 400
             G+ H+  R++          +  +  E++F++  +D     +L +  G   +A     
Sbjct: 364 DYGYAHHIQRLMVIGNFALLAGLVPQQVEDWFLAVYVDAVEWVELPNVAGMALFANGGRF 423

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            S PY                G +I+ 
Sbjct: 424 TSKPYI-------------ASGAYIKR 437


>gi|332307203|ref|YP_004435054.1| deoxyribodipyrimidine photolyase-related protein [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332174532|gb|AEE23786.1| deoxyribodipyrimidine photolyase-related protein [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 496

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 90/272 (33%), Gaps = 20/272 (7%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF----FDYPFQ 202
           IL    Q       +     + + + DL  +P            + I R       +P  
Sbjct: 162 ILVENDQPVGGRWSYDHENRKKIPKRDLDKIPTMEFASKTSYHVAAIARLQKQFSHHPGN 221

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQ 258
               ++P+  Q+A   L  F +++   +    D      +    S L+P L+IG+L+P+Q
Sbjct: 222 GQKIIYPVTHQDAQQWLDSFFEQRFRQFGPYEDAIVEGQSWLYHSILTPMLNIGLLTPKQ 281

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
             +     +        +    ++ ++I    +         V M            W  
Sbjct: 282 VISHAL-RYAKQHDISLASVEGFIRQIIGWREFMRATYNDLGVSMRTANH-------WQH 333

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
              +  ++ +G TG   +D  ++++   G+ H+  R++           +      +FM 
Sbjct: 334 HRTISASFYRGDTGIDPVDDTIKRILQTGYCHHIERLMVLGGFFFLCEFEPNEIYRWFMD 393

Query: 379 QLLDGDL----ASNNGGWQWAASTGNDSVPYF 406
             +D        +     Q A      + PYF
Sbjct: 394 MFVDSYDWVMVPNVYAMSQHADGGQITTKPYF 425


>gi|306019531|gb|ADM78819.1| cryptochrome 1-like protein [Picea sitchensis]
          Length = 118

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 75  KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-C 133
            G      + +N   SI  +         T+LFYN  Y+   + RD  L++ L  R I  
Sbjct: 1   LGAPLITKRSTN---SISAILQVVQATGATQLFYNHLYDPLSLVRDHKLKQDLSSRGILV 57

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +SF+  +L  P  + +     +  +  +    +          LP   I
Sbjct: 58  RSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYDPLAPLLPPKRI 106


>gi|283778295|ref|YP_003369050.1| deoxyribodipyrimidine photolyase-like protein [Pirellula staleyi
           DSM 6068]
 gi|283436748|gb|ADB15190.1| deoxyribodipyrimidine photolyase-related protein [Pirellula staleyi
           DSM 6068]
          Length = 541

 Score = 70.0 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 149/448 (33%), Gaps = 66/448 (14%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS 85
            AA  + D  + AV++A  ++   H     ++     A++   ++ L   GI   Y Q +
Sbjct: 34  AAAFDDFDPSLDAVWMAEVDEESTHVWSHKQRIAVFLAAMRHFREQLRASGITVHYTQLT 93

Query: 86  NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR----DKLLEKRLQHRV------ICKS 135
               + +   S   Q ++       Q    ++      D  +E+ L+         I   
Sbjct: 94  PEVTAKQPPSSLAHQLKMDL----EQLRPAKLIVTKPGDHRVEQSLRAAADELPIPIEIR 149

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLV------------------------- 170
            D   L  P     HA    ++   F    ++                            
Sbjct: 150 EDRHFLSTPAEFAEHARGRKQLRMEFFYREMRRKTGYLMNGDQPEGGEWNYDSENREAFG 209

Query: 171 -QADLRSLPVPAIR---LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
            +     +  P ++   LT  V      RF  +P +    ++P+  + AL +L  F    
Sbjct: 210 KKGPPLLVAAPKLKHDALTEQVLTLVRTRFATHPGKLERFLWPVTREQALVLLEHFITHL 269

Query: 227 VYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +  +   +D      A    SQ+S  +++ +L PR+     ++ +    ++  S      
Sbjct: 270 LPQFGRYQDAMWTGQAKLFHSQISSAMNLKLLDPREVIEAAEQAYRRGDVELASAEGFIR 329

Query: 283 NELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQ 342
             L WRE+ R +   Y    + +  +  T  +           +  G T    +   + Q
Sbjct: 330 QILGWREYVRGIYWLYMPEYLERNHLHATRTLP--------DFYWTGETPMRCLRETITQ 381

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAAST 398
               G+ H+  R++          +  +    ++++  +D     +L +  G  Q+A   
Sbjct: 382 TLETGYAHHIQRLMVTGLFALLAGIRPQEVHAWYLAVYIDAIEWVELPNTLGMSQYADGG 441

Query: 399 GNDSVP------YFRIFNPTIQGKRFDP 420
              S P      Y +  +    G +FDP
Sbjct: 442 VMASKPYVATGKYIQRMSNYCSGCQFDP 469


>gi|297539300|ref|YP_003675069.1| deoxyribodipyrimidine photolyase-like protein [Methylotenera sp.
           301]
 gi|297258647|gb|ADI30492.1| deoxyribodipyrimidine photolyase-related protein [Methylotenera sp.
           301]
          Length = 519

 Score = 70.0 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 87/262 (33%), Gaps = 47/262 (17%)

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLS 255
           F ++P    + ++P+    AL  L  F K K+  + + +D       S  SPYL   +LS
Sbjct: 220 FPNHPGSLKNFIWPVTRAAALQFLEDFIKNKLAGFGDHQDAMWQSANSSQSPYLWHSLLS 279

Query: 256 ---------PRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMG 304
                    PR+        +    + P +    ++ + L WREF R +     P +   
Sbjct: 280 TSLNLKLLNPREVIAAAVAAYHQQQL-PLASVEGFIRQILGWREFIRGVYWLDMPKMGEA 338

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             +        W            G T    +   +      G+ H+  R++        
Sbjct: 339 NHYKHTCTLPSWYW---------TGDTHMNCMKQTINDTMQHGYAHHIQRLMVTGMFGIL 389

Query: 365 LLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDP 420
             ++ R  E ++++  +D     +L +  G   +A      S PY               
Sbjct: 390 AELNPREVEAWYLAVYVDAVEWVELPNVAGMALYANGGRFTSKPYI-------------A 436

Query: 421 QGTFIRH---------WLPELN 433
            G +I+          + PEL 
Sbjct: 437 SGAYIKRMSNYCSHCKYKPELK 458


>gi|213584005|ref|ZP_03365831.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
          Length = 46

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 34/46 (73%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHG 52
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H 
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHD 46


>gi|149280167|ref|ZP_01886291.1| Deoxyribodipyrimidine photolyase [Pedobacter sp. BAL39]
 gi|149229181|gb|EDM34576.1| Deoxyribodipyrimidine photolyase [Pedobacter sp. BAL39]
          Length = 65

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 6  AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
             + + WLR DLR+ D+ ALY A       V+ +FI       +  +   +  FIY ++
Sbjct: 2  KKEISICWLRRDLRLEDHTALYHALK-GPHPVLLLFIFDTNILSKLPVKDARVTFIYNTI 60

Query: 66 LQVQK 70
           ++  
Sbjct: 61 KELNA 65


>gi|81299980|ref|YP_400188.1| hypothetical protein Synpcc7942_1171 [Synechococcus elongatus PCC
           7942]
 gi|23957791|gb|AAN40804.1| unknown [Synechococcus elongatus PCC 7942]
 gi|81168861|gb|ABB57201.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 503

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/397 (15%), Positives = 131/397 (32%), Gaps = 50/397 (12%)

Query: 23  NKALY-AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81
           + AL   A   S  +++ V   + E  ++     ++   +++++      L  +G  +  
Sbjct: 16  HPALSSRAVDQSQTRILLV--ESLEHAQRRPYHRQKLVLLWSAMRHFADELRSQG--WTV 71

Query: 82  HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-----LQHRVICKSF 136
                 D     + ++C Q ++ +L   +  E  +     ++        L     C+  
Sbjct: 72  DYVEQADSFQTAVSAWCQQYQIAEL---QVMEPADRSFRAIISSLELTSSLHWLSNCQFL 128

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-------SLPVPAIRLTGPVT 189
             +      +     L++   Y   RK     L +                    TG   
Sbjct: 129 WSTAEFTAWAKPYRQLRLENFYREGRKRWQVLLTEDQEPIGGQWNFDPENRKPPKTGLQP 188

Query: 190 PSNIPRFFD----------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           P       D                   +     +P+    AL  L +F   K+  +   
Sbjct: 189 PPAAHFLPDAITQTVIETVRSLELPLYGKLEPFHWPVTRSQALEALDQFLTVKLKTFGPY 248

Query: 234 RDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWR 288
           +D      A    S ++P L++G+L P +   + ++ F +    P +    ++ + L WR
Sbjct: 249 QDAMVSGQATMWHSLIAPALNLGLLHPLEVIRQTEQAFHNNQA-PIASVEGFIRQILGWR 307

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+   L  ++P       +           D  L + +  G T    +    +Q+  IG+
Sbjct: 308 EYMYGLHHYFPDTYGQSNWF--------EHDRPLPEFFWTGQTDLHCLQQCFQQIEAIGY 359

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
            H+  R++  +       +D    +E+F +  LD   
Sbjct: 360 SHHIQRLMILANFALIAGLDPWAVKEWFQATHLDAYD 396


>gi|218441390|ref|YP_002379719.1| deoxyribodipyrimidine photolyase-related protein [Cyanothece sp.
           PCC 7424]
 gi|218174118|gb|ACK72851.1| deoxyribodipyrimidine photolyase-related protein [Cyanothece sp.
           PCC 7424]
          Length = 506

 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 81/218 (37%), Gaps = 13/218 (5%)

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
               L      +T  V             +    ++ +  Q+AL +L  F   ++  +  
Sbjct: 186 PPEPLWFEPDEITQDVINKVKNLQLPTYGKIEPFLWGVTRQDALKVLDYFITTRLATFGP 245

Query: 233 QRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIW 287
            +D           S +SPYL++G+L P++    +++ + +  + P +    ++ + L W
Sbjct: 246 FQDAMVTGEETMWHSLISPYLNLGLLEPKEVIEAVEKRYNEEDL-PLNSIEGFIRQVLGW 304

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE+ + +   Y  V    P   W        +      W    T    +   ++Q+   G
Sbjct: 305 REYMQGI---YHHVDENYPQNNWFNH----NEPLPKFYWDSSQTDMNCLQQILQQVEQTG 357

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           + H+  R++  +       +  +  E++F +  +D   
Sbjct: 358 YAHHIQRLMVLNNFALIAGISPQEIEDWFHAAFIDAHD 395


>gi|56750388|ref|YP_171089.1| hypothetical protein syc0379_d [Synechococcus elongatus PCC 6301]
 gi|56685347|dbj|BAD78569.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 503

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/400 (15%), Positives = 133/400 (33%), Gaps = 56/400 (14%)

Query: 23  NKALY-AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81
           + AL   A   S  +++ V   + E  ++     ++   +++++      L  +G  +  
Sbjct: 16  HPALSSRAVDQSQTRILLV--ESLEHAQRRPYHRQKLVLLWSAMRHFADELRSQG--WTV 71

Query: 82  HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE--------KRLQHRVIC 133
                 D     + ++C Q ++ +L   +  +  +     ++           L +   C
Sbjct: 72  DYVEQADSFQTAVSAWCQQYQIAEL---QVMDPADRSFRAIISSLELTSSLHWLPN---C 125

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR-------SLPVPAIRLTG 186
           +    +      +     L++   Y   RK     L +                    TG
Sbjct: 126 QFLWSTAEFTAWAKPYRQLRLENFYREGRKRWQVLLTEDQEPIGGQWNFDPENRKPPKTG 185

Query: 187 PVTPSNIPRFFD----------------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
              P       D                   +     +P+    AL  L +F   K+  +
Sbjct: 186 LQPPPAAHFLPDAITQTVIETVRSLELPLYGKLEPFHWPVTRSQALEALDQFLTVKLKTF 245

Query: 231 VEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-L 285
              +D      A    S ++P L++G+L P +   + ++ F +    P +    ++ + L
Sbjct: 246 GPYQDAMVSGQATMWHSLIAPALNLGLLHPLEVIRQTEQAFHNNQA-PIASVEGFIRQIL 304

Query: 286 IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WRE+   L  ++P       +           D  L + +  G T    +    +Q+  
Sbjct: 305 GWREYMYGLHHYFPDTYGQSNWF--------EHDRPLPEFFWTGQTDLHCLQQCFQQIEA 356

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           IG+ H+  R++  + L     +D    +E+F +  LD   
Sbjct: 357 IGYSHHIQRLMILANLALIAGLDPWAVKEWFQATHLDAYD 396


>gi|156744167|ref|YP_001434296.1| deoxyribodipyrimidine photolyase-like protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156235495|gb|ABU60278.1| deoxyribodipyrimidine photolyase-related protein [Roseiflexus
           castenholzii DSM 13941]
          Length = 508

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 73/455 (16%), Positives = 142/455 (31%), Gaps = 59/455 (12%)

Query: 12  VWLRNDLRITDNKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           VW+  D  +  + A+ A         +  V + +  +  Q     ++   I +++     
Sbjct: 8   VWILGDQLLRAHPAIEAVEAQAGRRNMRIVLVESDARIAQMPYQRKKIVLILSAMRHYAA 67

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF--YNRQYEINEVRRDKLLEKRL- 127
           SL ++G +    +  +F   +  L  +  Q R  +L      +YE    ++D  L + L 
Sbjct: 68  SLRERGYLVDEVRAPSF---VAGLQRHIAQHRSQRLVTMAAAEYETRRFQQD-YLSQALG 123

Query: 128 ------------------------QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
                                     RVI + F  ++      +L            F +
Sbjct: 124 ISVEVLPNTQFLTGRRNPFPDVEPSQRVIMERFYRAMRRHFDVLLEPDGSPTGGAWNFDR 183

Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKF 222
              + L ++     P+                        A      +    A   L  F
Sbjct: 184 LNRRPLPRSVAPPPPLTFEPDAITRRVIAEVEARSGGVGTATGFALAVTHAQAEAALADF 243

Query: 223 CKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGA 278
              ++  +    D  +        S LSPYL+IG+L P Q    ++E +      P    
Sbjct: 244 VAHRLAAFGPYEDAMSAAHDVLFHSMLSPYLNIGLLEPLQIVRTVEEAYR-AGAAPIQSV 302

Query: 279 FSWLNELI-WREF-YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII 336
             +  ++I WRE+ Y       P +          +   WN    L + +  G T    +
Sbjct: 303 EGFARQIIGWREYIYWQYWRLMPGL---------RDANAWNATRPLPRFFWSGDTDMRCL 353

Query: 337 DAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----------LA 386
              + +    G+ H+  R++          +      ++F++  +D            + 
Sbjct: 354 RHVIERAIATGYTHHIERLMIVCNFCLLAGIRPSEVNDWFLAHYVDAYDWVMQPNVIGMG 413

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQ 421
            N  G   A      S  Y R  +    G R+DP+
Sbjct: 414 LNADGGLTATKPYIASAAYIRKMSDYCDGCRYDPK 448


>gi|238606859|ref|XP_002396828.1| hypothetical protein MPER_02855 [Moniliophthora perniciosa FA553]
 gi|215470103|gb|EEB97758.1| hypothetical protein MPER_02855 [Moniliophthora perniciosa FA553]
          Length = 134

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSV---PYFRIFNPTIQGKRFDPQGTFIRHW 428
           G E++ S L+D D+ASN G W + A  GND        R FNP  Q   +D +G ++R W
Sbjct: 2   GAEWYESLLIDYDVASNYGNWAYVAGVGNDPRASEGEPRKFNPVKQAFDYDAKGEYVRTW 61

Query: 429 LPELN--NVPTQYIHAPHSWLDKND 451
           + E N  N+  +++      L+K+D
Sbjct: 62  IGEFNGFNMKEEWLFQAWKALEKDD 86


>gi|109899107|ref|YP_662362.1| deoxyribodipyrimidine photolyase-related protein [Pseudoalteromonas
           atlantica T6c]
 gi|109701388|gb|ABG41308.1| deoxyribodipyrimidine photolyase-related protein [Pseudoalteromonas
           atlantica T6c]
          Length = 503

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 129/360 (35%), Gaps = 24/360 (6%)

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           ++ ++  +L ++ I  Q H     D  ++        +   ++ +++       +R    
Sbjct: 88  AMKRLFNALGEQKIE-QIHTVDPVDFILKKRLEQYAYEGHIQITWHKNPGFLNTQRQNSA 146

Query: 124 EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
            +  + R     F          +++    +   ++ F +   + + + ++ ++P     
Sbjct: 147 YRDSKKRWFMADFYRHQRTRLNILMDGDKPVSGRWS-FDEENRKKIPKKEIANIPEIQFC 205

Query: 184 LTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP-- 237
                    I R    F D+P      ++P+  ++A   L  F +++  Y+    D    
Sbjct: 206 AKTQYHTQAIERINADFSDHPGNGQTIIYPVTHEDAQLWLTAFFEQRFKYFGRFEDAIVE 265

Query: 238 --AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHL 294
                  S L+P L+IG+L+P+Q  ++  +   D      +    ++ ++I WREF R  
Sbjct: 266 GQNWLYHSVLTPMLNIGLLTPKQVISQAIQ-CADEHEVDLASLEGFVRQIIGWREFMRAT 324

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
            +        +          W     +  A+  G TG   +D  ++++   G+ H+  R
Sbjct: 325 YSDIGVSMRTQNH--------WQHKRKIPSAFYTGDTGIIPLDDTIKRILQTGYCHHIER 376

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFN 410
           ++           +      +FM   +D       ++     Q A      + PYF   N
Sbjct: 377 LMVLGGFFFLCEFEPDEIYGWFMDMFIDSYDWVMVSNVYAMSQHADGGQITTKPYFSGSN 436


>gi|327342150|gb|AEA50862.1| cry2-1 [Populus tremula]
          Length = 84

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 6  AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASL 65
          + S  +VW R DLRI DN AL  A    D  V  VFI  P++  Q         ++  S 
Sbjct: 2  SSSKTIVWFRRDLRIEDNPAL--AASARDGCVFPVFIWCPKE-GQFYPGRVSRWWLKQSF 58

Query: 66 LQVQKSLS 73
              +SL 
Sbjct: 59 AHSGQSLE 66


>gi|306019529|gb|ADM78818.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019533|gb|ADM78820.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019535|gb|ADM78821.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019537|gb|ADM78822.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019539|gb|ADM78823.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019541|gb|ADM78824.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019543|gb|ADM78825.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019545|gb|ADM78826.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019547|gb|ADM78827.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019549|gb|ADM78828.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019551|gb|ADM78829.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019553|gb|ADM78830.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019555|gb|ADM78831.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019557|gb|ADM78832.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019559|gb|ADM78833.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019561|gb|ADM78834.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019563|gb|ADM78835.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019565|gb|ADM78836.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019567|gb|ADM78837.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019569|gb|ADM78838.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019571|gb|ADM78839.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019573|gb|ADM78840.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019575|gb|ADM78841.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019577|gb|ADM78842.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019579|gb|ADM78843.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019581|gb|ADM78844.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019583|gb|ADM78845.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019585|gb|ADM78846.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019587|gb|ADM78847.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019589|gb|ADM78848.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019591|gb|ADM78849.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019593|gb|ADM78850.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019595|gb|ADM78851.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019597|gb|ADM78852.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019599|gb|ADM78853.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019601|gb|ADM78854.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019603|gb|ADM78855.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019605|gb|ADM78856.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019607|gb|ADM78857.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019609|gb|ADM78858.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019611|gb|ADM78859.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019613|gb|ADM78860.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019615|gb|ADM78861.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019617|gb|ADM78862.1| cryptochrome 1-like protein [Picea sitchensis]
 gi|306019619|gb|ADM78863.1| cryptochrome 1-like protein [Picea sitchensis]
          Length = 118

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 75  KGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVI-C 133
            G      + +N   SI  +         T+LFYN  Y+   + RD  L++ L  R I  
Sbjct: 1   LGARLITKRSTN---SISAILQVVQATGATQLFYNHLYDPLSLVRDHKLKQDLSSRGILV 57

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
           +SF+  +L  P  + +     +  +  +    +          LP   I
Sbjct: 58  RSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYDPLAPLLPPKRI 106


>gi|255263576|ref|ZP_05342918.1| bcct transporter [Thalassiobium sp. R2A62]
 gi|255105911|gb|EET48585.1| bcct transporter [Thalassiobium sp. R2A62]
          Length = 508

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/390 (16%), Positives = 126/390 (32%), Gaps = 42/390 (10%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL AA  + D  V+A  +     +  H    ++  F+ AS+ +  K L + G   +Y Q 
Sbjct: 18  ALEAADKSHDVVVMA-EVVDETGYVPHH--PKKIAFVLASMRKFAKRLRRDGWTVRYTQL 74

Query: 85  SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR-LQHRVI--CKSFDDSVL 141
            + D++   +           +      E  E R    LE   L+  ++   +       
Sbjct: 75  DDDDNAGSIVGELMRAADELGVHDVIATEPGEWRLISALEDIPLEISILPDTRFIATHTE 134

Query: 142 LPPGSILNHALQMYKVYTPFRKALI-----------QNLVQADLRSLPVPAIRLTGPV-- 188
               +     L+M   Y   R+              +     D R  P   I  +GP+  
Sbjct: 135 FEEWAEGRKELRMEWFYRDMRRKTGLLMDGDKPKGGKWNYDHDNRKAPPKEIDFSGPLRF 194

Query: 189 -TPSNIPRFFDYPFQAIDP--------MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                +    D   Q             F    + A   +  +    +  + + +D    
Sbjct: 195 EPDDEVSAVLDLVEQRFGQNFGDLRPFWFATDHEGAQQQVDHWIAGGLAQFGDYQDAMIT 254

Query: 240 Q----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHL 294
                  S +S Y+++G+L P     R  E      + P + A  ++ ++I WRE+ R +
Sbjct: 255 DQPFLFHSVVSFYINVGLLDP-LAVCRQVETAYRAGVAPLNAAEGFIRQIIGWREYMRGI 313

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                     +  +  +  +              G T    I+ A+ Q     + H+  R
Sbjct: 314 YVLEGPDYTSRNALGHSRDLP------AFFWG--GETNMRCIEQAVGQTQEHAYAHHIQR 365

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           ++          +D R   E++++   D  
Sbjct: 366 LMVTGNFALIAGIDPRQVHEWYLAVYADAF 395


>gi|171915248|ref|ZP_02930718.1| deoxyribodipyrimidine photolyase-related protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 514

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 100/300 (33%), Gaps = 29/300 (9%)

Query: 137 DDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
              VL+  G  +                    L    +R +P     LT  V       F
Sbjct: 163 HTGVLMEKGKPVGGQWNFDHDNRESFGKSGPGLRMPPMRFVPD---DLTKGVIADVEKHF 219

Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIG 252
             +P    +  +P+    A   L  F K ++  +   +D           S+LS  +++ 
Sbjct: 220 AKHPGALAEFDWPVTTVQARKALDDFIKHRLAEFGSFQDAMWTNEPWLYHSRLSAAMNLK 279

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY-PSVCMGKPFIPW 310
           +L PR+     ++ + +    P +    ++ + L WRE+ R +   + P           
Sbjct: 280 LLDPREVIAAAEKAYHEGRA-PLAAVEGFIRQILGWREYVRGIYCHFMPDYIERNAMHAE 338

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
                      L   +  G T    +  A+ Q   +G+ H+  R++          V  R
Sbjct: 339 H---------ELPDFYWTGDTEMNCLRDAIGQTLRLGYAHHIQRLMVTGLFALLYGVQPR 389

Query: 371 IGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRFDP 420
              E++++  +D     +L +  G  Q+       S P      Y +  +    G R+DP
Sbjct: 390 RVHEWYLAVYVDAVEWVELPNTLGMSQYGDGGVMASKPYVASGKYIQRMSNYCAGCRYDP 449


>gi|323193108|gb|EFZ78328.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
          Length = 45

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQH 51
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP QW+ H
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAH 45


>gi|254424869|ref|ZP_05038587.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           PCC 7335]
 gi|196192358|gb|EDX87322.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           PCC 7335]
          Length = 505

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 137/396 (34%), Gaps = 60/396 (15%)

Query: 30  CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89
            + SD  +I +        R++    ++   I++++    + L  +G    Y   + F  
Sbjct: 24  ANKSDTPIILIESIDYVIKRRYH--QQKLVLIWSAMRHFAEELKAEGWQVTYKIATTFQA 81

Query: 90  SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL-----LPP 144
               L+ +  Q  + +L   R  E  +    + L+       I ++ ++  L        
Sbjct: 82  P---LEEWIEQNNIDEL---RVMEPADRPFAEWLDAMSLDCEIVQTQNNHFLWSTAEFES 135

Query: 145 GSILNHALQMYKVYTPFRKALI-----------QNLVQADLRSLPVPAIRLTGPVTPSNI 193
            +    +L M   Y   R+              Q     + R  P   I    P+T    
Sbjct: 136 WATSRKSLLMESFYREGRRRFDILMDGKKPVGGQWNFDKENRRPPKGTISPPKPLTFEPD 195

Query: 194 P---------RFFDYPF--QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----A 238
                     +  DY    ++    + +  + AL +L  F ++++  +   +D       
Sbjct: 196 EITQTVMKTVKTADYSTFGESDSFGWAVTREQALQVLDNFVRDRLTTFGPYQDAMVTGED 255

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK----PKSGAFSWLNE-LIWREF--- 290
               + LSPYL+IG+L P +  + +   +          P +    ++ + L WRE+   
Sbjct: 256 TMWHAMLSPYLNIGLLQPMEVIDAVIAAYESAANSDHPIPLNSVEGFIRQVLGWREYMRG 315

Query: 291 -YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
            Y H+ A YPS    +      +   W  D+ L    +   T           L   G+ 
Sbjct: 316 IYNHVDADYPSRNYFEHIHSLPDFF-WTGDTKLNCLHQTINT-----------LKRTGYA 363

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           H+  R++  +       +  +  E++F +  +DG  
Sbjct: 364 HHIQRLMILANFSLISGLSPQQVEDWFHAAFIDGYD 399


>gi|254381685|ref|ZP_04997049.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194340594|gb|EDX21560.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 525

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 15/207 (7%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQ---GTSQLSPYLSIGVLSPRQCWNRL 263
           FP   + AL  LR+F + ++  +    D + A       S LS  L++G+L P +C  R 
Sbjct: 244 FPASRREALAALRRFVEYRLAGFGAHEDAMLAADPALSHSLLSAPLNLGLLHPAECVERA 303

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           +  +      P +    ++ ++  WRE+  HL  ++         +  T  +    D   
Sbjct: 304 EAAWR-AGEAPLNSVEGFVRQIAGWREYVWHLYWYFGEEYRRSNALRHTAPLPSWWDELD 362

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
             A          +  A+RQ+   GW H+  R++           D     ++F    +D
Sbjct: 363 ADAVTAR-----CLSTALRQVRDTGWTHHIPRLMVLGSYALQRGWDPEALTDWFHRSFVD 417

Query: 383 GD----LASNNGGWQWAASTGNDSVPY 405
           G     L +  G  Q+A      + PY
Sbjct: 418 GYDWVMLPNVVGMSQYADGGRMTTKPY 444


>gi|159469510|ref|XP_001692906.1| CPD photolyase class II [Chlamydomonas reinhardtii]
 gi|158277708|gb|EDP03475.1| CPD photolyase class II [Chlamydomonas reinhardtii]
          Length = 946

 Score = 68.1 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 12/115 (10%)

Query: 2   KATTAMSVHLVWLRNDLRITDNKALYAACHNSDA-----KVIAVFIATPEQWRQHGISAR 56
             +      + W+  D R+ DN AL  A   +       +V   F   P      G  AR
Sbjct: 60  PGSIGKGPVVYWMSRDQRLADNWALLHAIEAAQGAAGSSQVAVAFNLVPAFL---GAGAR 116

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
           Q  F+   L Q+   L  +GI F   +     D +  L           L +  +
Sbjct: 117 QFGFMLRGLRQLAPRLEARGIKFYLLKG----DPVHTLPQLVSGLGAGLLGWAER 167


>gi|254432578|ref|ZP_05046281.1| deoxyribodipyrimidine photolyase family protein [Cyanobium sp. PCC
           7001]
 gi|197627031|gb|EDY39590.1| deoxyribodipyrimidine photolyase family protein [Cyanobium sp. PCC
           7001]
          Length = 527

 Score = 68.1 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 130/399 (32%), Gaps = 52/399 (13%)

Query: 29  ACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFD 88
           A   S AKV  + + +     Q     ++   +++++      L + G    +    +F 
Sbjct: 21  AHAASKAKVRVLLVESASVLAQRRYHRQKLVLVWSAMRHFAAELREAGWQVDHVMADSFK 80

Query: 89  DSIEWLDSYCLQQRVTKLF----YNRQYEINEVRRDKLLEKRLQHRVI-------CKSFD 137
              + L+++     +T+L      +R +    V     LE+R Q R              
Sbjct: 81  ---QALETWIAAHGITELHLMEPADRPFRAAVVALHGRLERRTQGREAAPRAPRLVWHAS 137

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALI-----------------QNLVQADLRSLPVP 180
           ++ L  P +    A +  ++                          Q       R  P  
Sbjct: 138 NAFLWSPEAFAAWAGRYRQLRMELFYREGRRRFGVLLDGDGEPLGGQWNFDRANRKAPPK 197

Query: 181 AIRLTGPVTPSN----------IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
            +R   P+  S           +    D P  A    + +    AL +L  F   ++  +
Sbjct: 198 GLRGPEPLCFSPDGITEAVIARVEALPDLPGTARPFNWAVTRGQALEVLEHFISTRLDGF 257

Query: 231 VEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
              +D             LSPYL++G+L P +   RL++   +      S        L 
Sbjct: 258 GPYQDAMVGGQPTLWHGLLSPYLNLGLLHPLEVIQRLEQAGRERGTPLASLEGVIRQILG 317

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WRE+   L  ++ S    +        +    +S        G +G   +++   +L T 
Sbjct: 318 WREYTHGLYHWFGSDYPARNHFQHHRPLPPWFES-------LGGSGLNCLESVFAELATS 370

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           G+ H+  R++  +       +D +    +F    +DG  
Sbjct: 371 GYAHHIQRLMVLANYGLIAGLDPQALTAWFHRMFIDGHD 409


>gi|166365313|ref|YP_001657586.1| deoxyribodipyrimidine photolyase-related protein [Microcystis
           aeruginosa NIES-843]
 gi|166087686|dbj|BAG02394.1| deoxyribodipyrimidine photolyase-related protein [Microcystis
           aeruginosa NIES-843]
          Length = 507

 Score = 68.1 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 69/437 (15%), Positives = 131/437 (29%), Gaps = 55/437 (12%)

Query: 27  YAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81
            AA  N  A      VI   I +    RQ     ++  FI++++    + L   G    Y
Sbjct: 16  QAALANRQAYAQETPVIL--IESHNHIRQRPYHQQKLVFIWSAMRHFAEELKTLGWSVTY 73

Query: 82  HQCSNFDDSIEWLDSYCLQQRVTKL---------------FYNRQYEINEVRRDKLLEKR 126
               +F+     L ++  +  + +L                 N    I  +  +  L  R
Sbjct: 74  EVAEDFEP---ILSAWIKRLGIKELQIMMPNDLPFLRLIKNLNLDCPITLIDNNHFLWTR 130

Query: 127 LQHRVICKSFDDSVL-------LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
                  KS    +L            IL    Q       F K   +        + P+
Sbjct: 131 TDFNNWAKSRKRLLLEDFYRESRKKWQILMENNQPIGGQWNFDKQNRKPPKDGLKTAAPL 190

Query: 180 PAIRLTGPVTPSNIPRFFDYP-FQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                   +         D P +  I P  + +  + AL +L  F    +  +   +D  
Sbjct: 191 WFEPDEITLQVIADVEALDIPKYGKIKPFRWAVTRRQALQVLEHFITNCLPNFGPYQDAM 250

Query: 238 ----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    S LSPYL++G+L+P +     +  +    +   S        L WRE+ + 
Sbjct: 251 ITGEETLWHSLLSPYLNLGLLTPLEVIQGAEIAYKKDNLALNSIEGFIRQVLGWREYMQG 310

Query: 294 LMAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  +       + +    + +    W+ +   +   KQ           + Q+   G+ H
Sbjct: 311 IYHYLGEDYANRNWFEHQQPLPAFFWDSNQTEMNCLKQ----------VLSQVENTGYAH 360

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           +  R++  S          +  E +F S  +D     +          G  +        
Sbjct: 361 HIQRLMILSNFALIFGCSPQEIENWFHSVFIDAY---DWVMQTNVLGMGQFADGGILASK 417

Query: 411 PTIQGKRF-DPQGTFIR 426
           P      + D    + R
Sbjct: 418 PYAASANYIDKMSDYCR 434


>gi|159901997|gb|ABX10727.1| deoxyribodipyrimidine photolyase-related protein [uncultured
           planctomycete 13FN]
          Length = 515

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 93/252 (36%), Gaps = 26/252 (10%)

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AI 239
           +T  V      RF ++P        P+  + A   L+ F +  +  + +  D      A 
Sbjct: 209 VTKDVVDLVEHRFAEHPGNLNHFTLPVTRRQAKAFLKHFIESILPNFGKWEDAMWTGEAF 268

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-F 297
              S+LS  L++ +L PR+C +   + +      P +    ++ + L WREF R +    
Sbjct: 269 LYHSRLSAPLNMKLLHPRECVDAAVQAYR-TGKAPLNSVEGFVRQILGWREFIRGIYWLK 327

Query: 298 YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT 357
            P       F         +    L   +  G T    +  +M+Q+   G+ H+  R++ 
Sbjct: 328 MPEYVELNHF---------DHQRELPSFFWDGDTEMSCVKQSMQQVIDHGYSHHIHRLMV 378

Query: 358 ASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF------R 407
                +   V  R+  E+ M+  +D      L +  G  Q+       + PY        
Sbjct: 379 LGNFAQLWGVHPRLFHEWHMAMYVDAIDWVSLPNTLGMSQFGDGGVVGTKPYCSSGNYIN 438

Query: 408 IFNPTIQGKRFD 419
             +   +G RFD
Sbjct: 439 KMSNFCKGCRFD 450


>gi|282899480|ref|ZP_06307446.1| hypothetical protein CRC_00927 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195637|gb|EFA70568.1| hypothetical protein CRC_00927 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 511

 Score = 67.7 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 88/252 (34%), Gaps = 16/252 (6%)

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD 198
           +VL+  G  +     + K      K  + +         P     +T      ++   F 
Sbjct: 157 NVLMEEGKPVGGQWNLDKQNRKPPKKGLASPPALWFPPDPTTQAVIT------HVRNHFP 210

Query: 199 YPFQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGV 253
           + +  +D   + +    +  +L  F + ++  +   +D           + LSPYL++G+
Sbjct: 211 HGYGEVDTFRWAVTRSQSRKVLSHFLETRLPNFGPYQDAMVTGEDTLWHALLSPYLNLGL 270

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           L P +    ++EE+    +   S        L WRE+ R +  +            W   
Sbjct: 271 LHPMEVIQAVQEEYNRHQLNLNSVEGFVRQILGWREYMRGVYIYQSQTDPDYTQRNWF-- 328

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
              N +  L   +  G T    +   + Q+   G+ H+  R++  S     L    +   
Sbjct: 329 ---NHNQPLPHWFWTGKTDLNCLHQTLEQIYDTGYAHHIQRLMILSNFNLILGTSPQYVV 385

Query: 374 EYFMSQLLDGDL 385
           ++F +  +D   
Sbjct: 386 DWFHAVFIDAHD 397


>gi|284989242|ref|YP_003407796.1| deoxyribodipyrimidine photolyase-like protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284062487|gb|ADB73425.1| deoxyribodipyrimidine photolyase-related protein [Geodermatophilus
           obscurus DSM 43160]
          Length = 528

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 24/233 (10%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLSPRQCWNR 262
           +FP+  + ALH LR F   ++  +    D           S LSP +++G+L P +  + 
Sbjct: 241 LFPVTREEALHRLRDFLDTRLGAFGPHEDAMLAGDRWMTHSLLSPAVNLGLLDPIEEVHA 300

Query: 263 LKEEFVDLLIKPK----SGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
            ++ + D + +      +    ++ + + WR++  H    +         +   E +   
Sbjct: 301 AEQRYRDSVAEGDPLPLNSVEGFVRQVMGWRDYIWHTYWHFGRDFRHANALAAHEAVP-- 358

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
                L     G      +   +  L   GW+H+  R++          +D     ++F 
Sbjct: 359 ---DWLADLDDGAVDAACMSDVLGDLRRDGWVHHIPRLMVLGNYALQRGIDPLAMTDWFH 415

Query: 378 SQLLDGDL----ASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRFDP 420
              +DG      A+  G  Q A      + P      Y    +    G R+DP
Sbjct: 416 RSFVDGYDWVMIANVVGMSQHADGGLLATKPYAAGGAYIDRMSDYCGGCRYDP 468


>gi|256372763|ref|YP_003110587.1| deoxyribodipyrimidine photolyase-related protein [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009347|gb|ACU54914.1| deoxyribodipyrimidine photolyase-related protein [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 502

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 133/418 (31%), Gaps = 45/418 (10%)

Query: 38  IAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY 97
           + +F+ +  +        ++ H I A + +    L  +G      +   F + +    + 
Sbjct: 31  VVLFVVSRAKLAARPWHRQRLHAILAGMARFAAELRAEGFRVDEREADTFTEGLAAHRAS 90

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
              + V ++     +    + R   +E  +   +   + ++       ++        + 
Sbjct: 91  YRPETV-RMMAPESFAGEALARRLGVE-LVASNLFLTTREEFGEWIAQTLERGRRPRMEE 148

Query: 158 YTPFRKALIQNLVQADLRS-----------LPVPAIRLTGPVTPSNIPRFFD------YP 200
           +  +++  +  L+  D  +           LP P   +  P    +     D       P
Sbjct: 149 FYRWQRRRLGILMDEDGPAGGRWNFDSENRLPPPRAPVAWPTVIVDQLDQLDVRIVASLP 208

Query: 201 FQAIDP----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIG 252
            QA+       +P     AL  LR F  E +  +    D           S LS  L++G
Sbjct: 209 DQAVGDPPQGWWPTNRVGALRRLRAFIDEGLSRFGPYEDAMLADEPRLAHSMLSVALNLG 268

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           +L P +    ++  F D  +   S        + WRE+ R    +       +  +    
Sbjct: 269 LLHPHEVVEAVERAFRDGRVGLSSAEGFLRQVIGWREYVRGFYWWQGPTYRSQNALGAER 328

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +          A   G T    +   +  +   GW+H+  R++  + L     V     
Sbjct: 329 PLP--------PALATGRTRMRCVRTTLEGVERHGWVHHIQRLMVLANLGTLTGVQPAAM 380

Query: 373 EEYFMSQLLDGD----LASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRFDP 420
            ++   + +DG     + +  G   WA      + P      Y R  +   +   +DP
Sbjct: 381 LDWMWERFVDGAEWVMVPNVIGMGLWADGGVMATKPYVAGGAYLRRMSDYCRSCEYDP 438


>gi|159028913|emb|CAO90718.1| phr2 [Microcystis aeruginosa PCC 7806]
          Length = 516

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 67/437 (15%), Positives = 127/437 (29%), Gaps = 55/437 (12%)

Query: 27  YAACHNSDA-----KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81
            AA  N  A      VI   I +    RQ     ++   I++++    + L   G    Y
Sbjct: 16  QAALANRQAYSQETPVIL--IESHNHIRQRPYHRQKLVLIWSAMRHFAEELKTLGWSVTY 73

Query: 82  HQCSNFDDSIEWLDSYCLQQRVTKL---------------FYNRQYEINEVRRDKLLEKR 126
               +F      L ++  +  + +L                 N    +  +  +  L  R
Sbjct: 74  EVTEDFGP---ILSAWIKRLGIKELQIMMPNDLPFLRLIKNLNLDCAVTLIDNNHFLWTR 130

Query: 127 LQHRVICKSFDDSVL-------LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
                  KS    +L            IL    Q       F K   +        + P+
Sbjct: 131 TDFNNWAKSRKRLLLEDFYRESRKKWQILMENNQPIGGQWNFDKQNRKPPKDGLKTTAPL 190

Query: 180 PAIRLTGPVTPSNIPRFFDYP-FQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
                   +         D P +  I P  + +  + AL +L  F    +  +   +D  
Sbjct: 191 WFEPDKITLQVIADVEALDIPKYGKIKPFRWAVNRRQALQVLEHFITNCLPNFGTYQDAM 250

Query: 238 ----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
                    S LSPYL++G+L+P +        +    +   S        L WRE+ + 
Sbjct: 251 VTGEETLWHSLLSPYLNLGLLTPLEVIQGAAIAYKKDNLALNSIEGFIRQVLGWREYMQG 310

Query: 294 LMAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           +  +         +    + +    W+ +   +   KQ           + Q+   G+ H
Sbjct: 311 IYHYLGEDYANHNWFEHQQPLPAFFWDSNQTEMNCLKQ----------VLSQVENTGYAH 360

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFN 410
           +  R++  S          +  E +F S  +D     +          G  +        
Sbjct: 361 HIQRLMILSNFALIFGCSPQEIENWFHSVFIDAY---DWVMQTNVLGMGQFADGGILASK 417

Query: 411 PTIQGKRF-DPQGTFIR 426
           P      + D    + R
Sbjct: 418 PYASSANYIDKMSDYCR 434


>gi|325108590|ref|YP_004269658.1| deoxyribodipyrimidine photolyase-related protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324968858|gb|ADY59636.1| deoxyribodipyrimidine photolyase-related protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 519

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 123/355 (34%), Gaps = 29/355 (8%)

Query: 68  VQKSLS----QKGIVFQYHQCSNFDDSIEWLDSYCLQQRV--TKLFYNRQYEINEVRRDK 121
           + + L     +K +V         D+     DS  +   +   + FY++  E  E    K
Sbjct: 90  LSRDLKRFKPEKLVVVHPGDYRVLDELKSTADSCDVALEIRSDRHFYSQPEEFAEYAEGK 149

Query: 122 LLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA 181
             + RL++         ++L+            Y      R++  ++   + L+      
Sbjct: 150 K-DLRLEYFYRWLRKKHNILIESDGSPTGGDWNYDHDN--RESFNKSGPASGLKPRRFRP 206

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG 241
              T  V      RF D+P        P+    A   LR+F K  +  + E  D      
Sbjct: 207 DETTQEVIALVESRFADHPGSLEHFDLPVTHTEARTKLREFIKHGLPNFGEFEDAMWTGE 266

Query: 242 T----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA 296
           T    S LS  L++ +L+PR+C     E + +    P +    ++ + L WREF R +  
Sbjct: 267 TYLYHSHLSACLNLKLLNPRECIELAVEAYEN-GDAPLNSVEGFVRQILGWREFVRGIYW 325

Query: 297 -FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              P       F         + D  +   +  G T    +  +M  +    + H+  R+
Sbjct: 326 THMPEYAEKNYF---------DHDREVPSFFWDGETDMRCVRESMSHVVNHSYAHHIHRL 376

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406
           +    L + + V      E+ M+  LD      L +  G  Q+       + PY 
Sbjct: 377 MVLGNLSQTVGVHPLKFHEWHMAMYLDAIDWVSLPNTLGMSQFGDGGIVGTKPYC 431


>gi|297583236|ref|YP_003699016.1| deoxyribodipyrimidine photolyase-like protein [Bacillus
           selenitireducens MLS10]
 gi|297141693|gb|ADH98450.1| deoxyribodipyrimidine photolyase-related protein [Bacillus
           selenitireducens MLS10]
          Length = 543

 Score = 67.3 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 58/387 (14%), Positives = 119/387 (30%), Gaps = 54/387 (13%)

Query: 33  SDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE 92
              +++ V    P  W +         +    +   ++ +  KG      Q   F D +E
Sbjct: 62  GQDRILLVEETDPALWAESHCHRLIHQWSI--IRHFEQDVKDKGFPVTRMQAPAFTDGLE 119

Query: 93  WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFDDSVLLPPGS----- 146
                   Q V +LF+   Y+  E      L +  Q      +  +++  L PG      
Sbjct: 120 RFLDKSPDQDV-QLFWPTDYKSRE-----ALSEWKQTFGGSVRIAEETGFLIPGKEWRSL 173

Query: 147 -ILNHALQMYKVYTPFRKALI------------------------QNLVQADLRSLPVPA 181
              +   ++  +Y  FRK                            + V       P  +
Sbjct: 174 LKPDKRWKLDPIYRSFRKRFDVLMNEENQPVGGKWSYDQDNRKKAPDHVTFPPPCFPERS 233

Query: 182 IRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY----VEQRDIP 237
             +T  V      ++ D          P+  ++A  +   F   ++  +       R   
Sbjct: 234 A-ITEDVIQEVKEQYPDLYGNPDSFEQPVTARDAEALADHFIAHRLASFGDYQDAMRPKD 292

Query: 238 AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA 296
                S LS  L+  +L P     + ++ + D  + P +    ++ + L WRE+ R +  
Sbjct: 293 VYMSHSLLSAALNHSLLDPLSLIRKAEQAYHD-GLAPLNAVEGFIRQILGWREYIRGVYL 351

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
                         T  +           +  G T    +  A+  L   G+ H+  R++
Sbjct: 352 NTMPSYKDVNHFGHTRDLP--------TFFWDGNTKMACVSDAVTSLLETGYTHHIQRLM 403

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDG 383
               L   L ++ +   ++F +   D 
Sbjct: 404 ILGNLSTLLGIEPKQVSDWFYTMYTDA 430


>gi|254283103|ref|ZP_04958071.1| photolyase [gamma proteobacterium NOR51-B]
 gi|219679306|gb|EED35655.1| photolyase [gamma proteobacterium NOR51-B]
          Length = 527

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 86/259 (33%), Gaps = 18/259 (6%)

Query: 156 KVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNA 215
           +        +     +     + V    +T  V       F D P         + +  A
Sbjct: 195 RWNYDNENRVGWRQQEDIPPRVNVEPDAVTAAVIEEVSAAFPDNPGDLSQFRLAVTQTGA 254

Query: 216 LHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
                 FC+  +  +   +D    +      S +S YL+ G+L P +   R+++ + +  
Sbjct: 255 ERQFDWFCEHALSRFGTYQDALVEESPWVFHSLISMYLNCGLLDPLEVCRRVEQHWRNGD 314

Query: 272 IKPKSGAFSWLNELIWREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
            +  +        L WRE+ R +   + P       F       +W            G 
Sbjct: 315 CELSAAEGFIRQVLGWREYIRGIYWRFMPDYADENFFGAERPLPDWFW---------SGE 365

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LA 386
           T    +  A+RQ   +G+ H+  R++          +D +   +++++  +D      L 
Sbjct: 366 TEMRCVSQAVRQSLDLGYAHHIQRLMVIGNFSLLTGLDVQSVCDWYLAVYIDAYEWVELP 425

Query: 387 SNNGGWQWAASTGNDSVPY 405
           +  G   +A      S PY
Sbjct: 426 NTLGMALYADGGSMASKPY 444


>gi|260063634|ref|YP_003196714.1| hypothetical protein RB2501_02470 [Robiginitalea biformata
           HTCC2501]
 gi|88783079|gb|EAR14252.1| hypothetical protein RB2501_02470 [Robiginitalea biformata
           HTCC2501]
          Length = 510

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 128/409 (31%), Gaps = 59/409 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDS---IEWLDSYCLQQRVTKLFYNRQYEINEV 117
            +AS+      L  KG   +Y + S+ D+     E +     +    +  Y      +E 
Sbjct: 50  FFASMRNFAGELGDKGHQVRYFKISDGDNPGKLPELIRQVLSEGGAERFEYQ---SPDEY 106

Query: 118 RRDKLLEKRLQ------HRVICKSFDD---------------------SVLLPPGSILNH 150
           R D+ L +  +        V  + F                        ++     +L  
Sbjct: 107 RLDQQLRELCEALDCETQAVDTEHFYTGRSDLAEFFDGKKQMVMESFYRMMRRKHQVLMD 166

Query: 151 ALQMYKVYTPF----RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
                     F    RK           R        L   +  + +    +    + + 
Sbjct: 167 EGDPLGGRWNFDGDNRKKWKGEPEIPHERGFRKDLTALEQEIRDAGVETIGEVDADSFN- 225

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNR 262
            +P    + L +LR FC   + ++ + +D           S+LS  L+  +LSPR+   +
Sbjct: 226 -WPTSRADGLAVLRHFCDSLLVHFGDYQDAMHTGEKYLFHSRLSFALNTKMLSPREVVEK 284

Query: 263 LKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAF-YPSVCMGKPFIPWTEKIEWNKD 319
           ++  + D       S    ++ + L WRE+ R +     P    G              +
Sbjct: 285 VEATYRDDPDAIDLSQTEGFIRQVLGWREYMRGVYWKEMPGYADGNALG---------NE 335

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
           + L   +  G T    +  A+RQ     + H+  R++           D    + +++  
Sbjct: 336 NPLPDFYWTGETKMNCLSHAIRQSLDTAYAHHIQRLMITGNYALLTQTDPDQVDAWYLGI 395

Query: 380 LLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
            +D     ++ +  G  Q+A      + PY    N   +   +     +
Sbjct: 396 YIDAIQWVEMPNTRGMSQFADGGLVATKPYVSSANYIRKMSNYCSDCQY 444


>gi|220909346|ref|YP_002484657.1| deoxyribodipyrimidine photolyase-like protein [Cyanothece sp. PCC
           7425]
 gi|219865957|gb|ACL46296.1| deoxyribodipyrimidine photolyase-related protein [Cyanothece sp.
           PCC 7425]
          Length = 507

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 88/240 (36%), Gaps = 16/240 (6%)

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTS 243
           V  S + +     +Q     + +  Q AL +L+ F + ++  +   +D           +
Sbjct: 205 VKQSPLFQASQAYWQIEPFQWGVTRQQALQVLQFFIQTRLSSFGPYQDAMITNEQTMWHA 264

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEF-VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVC 302
            LSPYL++G+L P +     ++ +  D      S    ++ +++    Y H +  Y  + 
Sbjct: 265 LLSPYLNLGLLHPLEVVLAAEQAYLADRDTWELSSVEGFIRQILGWREYMHGIYLY--LG 322

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
              P   W      N    L   +  G T    +   + Q+   G+ H+  R++  +   
Sbjct: 323 EDYPERNWF-----NHSHPLPSFYWTGETPMNCLHQVIHQVKQTGYAHHIQRLMVLNNFA 377

Query: 363 KDLLVDWRIGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
               V  +  +++F +  +DG       +  G  Q+A      S PY    N       +
Sbjct: 378 LIAGVSPQELQDWFHAAFIDGYDWVMQGNVIGMGQYADGGQVASKPYAASANYINTMSDY 437


>gi|67920062|ref|ZP_00513582.1| Deoxyribodipyrimidine photolyase-related protein [Crocosphaera
           watsonii WH 8501]
 gi|67857546|gb|EAM52785.1| Deoxyribodipyrimidine photolyase-related protein [Crocosphaera
           watsonii WH 8501]
          Length = 501

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 57/394 (14%), Positives = 137/394 (34%), Gaps = 47/394 (11%)

Query: 24  KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
            AL + C +   +   + I + +  ++     ++   +++++    + L  +G    Y  
Sbjct: 17  AALLS-CQDDKQETHVILIESHDYIKKRPYHQQKLVLVFSAMRHFAEELKTQGWTVTYEI 75

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE--------------KRLQH 129
             +F+     L+ +  + ++T+L   R     +      ++                L  
Sbjct: 76  SQDFETP---LNDWIKKNKITEL---RLVTPYDKPFSSRVKSFKLDCKIKLIPNNHFLWT 129

Query: 130 RVICKSFDDS---VLLP--------PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           +   K + DS   +LL           +IL    Q       F K   +   +      P
Sbjct: 130 QEEFKQWTDSRKRLLLEDFYREGRKRFNILMEDNQPIGGKWNFDKQNRKPPKKGLNPPTP 189

Query: 179 VPAIRLTGPVTPSNIPRFFDYP-FQAIDP-MFPIGEQNALHILRKFCKEKVYYYVEQRD- 235
           +               + +  P +  I P  + +    AL +L  F +  +  +   +D 
Sbjct: 190 LQFEPDKITQQVIKDIKSYKIPTYGKIKPFKWAVTRSQALQVLDNFIEHNLNNFGTYQDA 249

Query: 236 IPAIQGT---SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFY 291
           +   + T   S +SPY+++ +L+P +    +++ + +    P +     + + L WRE+ 
Sbjct: 250 MITGEYTLWHSLISPYINLSILTPWEVIKSIEKAYYE-FDYPLNSVEGLIRQILGWREYM 308

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
             +          K +    EK+           W    T    +  +++Q+   G+ H+
Sbjct: 309 YGIYKIMDDDYAQKNWFNHQEKLP-------EFYWDSSQTDMNCLKQSLQQVEETGYSHH 361

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
             R++        + V  +   ++F S  +D   
Sbjct: 362 IQRLMVLGNFALIVGVSPQAVNDWFHSAFIDAYD 395


>gi|254227924|ref|ZP_04921354.1| deoxyribodipyrimidine photolyase-related protein [Vibrio sp. Ex25]
 gi|262396093|ref|YP_003287946.1| DNA photolyase [Vibrio sp. Ex25]
 gi|151939420|gb|EDN58248.1| deoxyribodipyrimidine photolyase-related protein [Vibrio sp. Ex25]
 gi|262339687|gb|ACY53481.1| DNA photolyase [Vibrio sp. Ex25]
          Length = 514

 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 120/371 (32%), Gaps = 59/371 (15%)

Query: 57  QSHFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +    ++++      L ++G   +        +F+D  + L  Y  +   +K  Y R   
Sbjct: 48  KVCAFFSAMANFANELQEEGHQVLHLTLDDTQSFEDLAQVLQHYVSEVGASKFEYQR--- 104

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS--------------------------I 147
            +E R  + L K     V+ +S D    L P                            I
Sbjct: 105 PDEYRLLEQLAKLKLDGVVMRSVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFNI 164

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAI 204
           L    +       +       L   D+  LP P   +  ++  V                
Sbjct: 165 LMQDGKPIGGKWNYDANNRNKLKAKDIEQLPKPLMFSHDVSDIVERLGRHNIQTIGKLNG 224

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPR 257
           D ++P+    +L +L  FC+  +  +   +D    Q         S++S  L+  +L+PR
Sbjct: 225 DLLWPVNRSQSLSLLAHFCQVCLPLFGRFQDAMTGQHEAKWSLYHSRISFSLNSKLLNPR 284

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREF----YRHLMAFYPSVCMGKPFIPWTE 312
           +  +   + F        S    ++ + L WRE+    Y   M  YP+    +      +
Sbjct: 285 EVIDASLKAFHANADIDISQVEGFIRQILGWREYIRGVYWANMPHYPNKNELEASRKLPD 344

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
              WN           G T    +  A+ Q     + H+  R++          +D    
Sbjct: 345 FF-WN-----------GETKMACMRNAIGQSLDYAYAHHIQRLMVTGNFCLLTEIDPDQV 392

Query: 373 EEYFMSQLLDG 383
           +E+++   +D 
Sbjct: 393 DEWYLGIYVDA 403


>gi|126655279|ref|ZP_01726718.1| hypothetical protein CY0110_16747 [Cyanothece sp. CCY0110]
 gi|126622758|gb|EAZ93463.1| hypothetical protein CY0110_16747 [Cyanothece sp. CCY0110]
          Length = 342

 Score = 67.0 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 86/226 (38%), Gaps = 17/226 (7%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGT---SQLSPYLSIGVLSPRQCWNRL 263
           + +    AL +L  F +  +  +   +D +   + T   S +SPY+++G+L P +   ++
Sbjct: 62  WGVTRSQALQVLDHFLENNLNNFGTYQDAMITGEYTMWHSLISPYINLGLLRPLEVIQKI 121

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           ++ + D    P +     + + L WRE+   +          K +    EK+        
Sbjct: 122 EKAYHDFNY-PLNSVEGLIRQILGWREYMYGIYQLMDDDYRDKNWFDHQEKLP------- 173

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
              W    T    +   ++Q+   G+ H+  R++  S     + V  +   ++F S  +D
Sbjct: 174 EFYWDSSQTDMNCLKQVLQQVEETGYGHHIQRLMVLSNFALIVGVSPQAINDWFHSAFID 233

Query: 383 GDL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
           G       +  G  Q+A      S PY    N   +   +     +
Sbjct: 234 GYDWVMVPNVIGMGQFADGGILASKPYAASANYINKMSDYCKNCVY 279


>gi|294495341|ref|YP_003541834.1| deoxyribodipyrimidine photolyase-related protein [Methanohalophilus
           mahii DSM 5219]
 gi|292666340|gb|ADE36189.1| deoxyribodipyrimidine photolyase-related protein [Methanohalophilus
           mahii DSM 5219]
          Length = 450

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 98/285 (34%), Gaps = 21/285 (7%)

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
              L       P +    +   Q    S       +   V  S  P +     +  D   
Sbjct: 114 KWNLDRENRKLPPKNGFQKKPPQHIKFSPDKITKEIIAEVERSEYPTY----GKGKDFNL 169

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRLK 264
            +  ++A   L  F +EK+  +   +DI      +   S LSPYL++G+L P     + +
Sbjct: 170 AVTHEDAQKALDFFIEEKLSNFGPYQDIMLTGDNVLWHSILSPYLNLGLLHPLNVIKKAE 229

Query: 265 EEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
             +    + P +    ++ + L WRE+   +  +     +   +     ++        +
Sbjct: 230 LAYYQKNL-PLNSIEGFIRQILGWREYMHCIYKYTGDKYLKSNWFDHERELP------DI 282

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             + +  T    + + + ++   G+ H+  R++  S       V+    + +F +  +D 
Sbjct: 283 YWYPE-RTSMNCMASVIEEVLNTGYAHHIQRLMILSNFALLAEVNPAKVKNWFHAAFIDA 341

Query: 384 DL----ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
                  +  G  Q+A      + PY    N   +   +    T+
Sbjct: 342 YDWVMQPNVIGMGQFADGGILATKPYISSANYINKMSDYCQNCTY 386


>gi|213428165|ref|ZP_03360915.1| hypothetical protein SentesTyphi_22875 [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
          Length = 45

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE 46
          M  HLVW R DLR+ DN AL AAC ++ A+V+A++I+TP 
Sbjct: 1  MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPA 40


>gi|167825045|ref|ZP_02456516.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 9]
          Length = 58

 Score = 66.6 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 1  MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
          M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +  
Sbjct: 1  MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWW 58


>gi|55377384|ref|YP_135234.1| cryptochrome/photolyase [Haloarcula marismortui ATCC 43049]
 gi|55230109|gb|AAV45528.1| cryptochrome/photolyase [Haloarcula marismortui ATCC 43049]
          Length = 524

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/405 (14%), Positives = 117/405 (28%), Gaps = 61/405 (15%)

Query: 30  CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89
               D  V+   I +    R+      +   +++++   + +L   G   +Y Q   F+D
Sbjct: 34  ARRPDEPVLL--IESESFARKLPYHPHKLILLFSAMRHFRDNLRDDGRTVRYQQTETFED 91

Query: 90  SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF--DDSVLLPPGSI 147
               L ++        L  +R    +   R   LE  +        F  DD  L  P   
Sbjct: 92  G---LAAHFEANPDDTLVTHRPQTESAQAR---LESLVAEAGGAVEFVADDRFLCAPSQF 145

Query: 148 LNHALQMYKVYTPFRKALIQN-------------------------LVQADLRSLPVPAI 182
                     +  F + + +                                   P    
Sbjct: 146 DEWRGDGRYRHEDFYRFMRRETGYLMADGDPVGGEWNYDDQNRETPPDGWTPPEPPQFEP 205

Query: 183 RLTGPVTPSNIPRFFD-------YPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVE 232
                     +   FD       +     DP    +P+  + A+  L  F   ++  +  
Sbjct: 206 DDVTEDVIEWVYSTFDGSYDEQPFGGDWTDPEPFRWPVTRRQAVQALDHFVTNRLTEFGS 265

Query: 233 QRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIW 287
            +D           S LS  L++G+L P +   R    + D    P +    ++ + L W
Sbjct: 266 YQDAMLEDEWAMSHSLLSTSLNLGLLGPAEVIERAITAYED-GDAPLNSVEGFIRQVLGW 324

Query: 288 REFYRHLMAF-YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           REF RH+     PS+                 +  L   +  G T    +   +  +   
Sbjct: 325 REFLRHVYRREMPSLAEANQLGA---------NEALPDFYWNGDTDMACLSDVVDGVRER 375

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
           G+ H+  R++  +       V+      +F +  +D         
Sbjct: 376 GYSHHIERLMILANFGLIYGVEPAQLNRWFHAGYVDAFHWVTTPN 420


>gi|254485608|ref|ZP_05098813.1| photolyase [Roseobacter sp. GAI101]
 gi|214042477|gb|EEB83115.1| photolyase [Roseobacter sp. GAI101]
          Length = 509

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 124/393 (31%), Gaps = 48/393 (12%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL AA   +D  V+A  +     + +H    ++   I+A++ +  ++L + G    Y Q 
Sbjct: 19  ALCAADKANDTIVMA-EVTDEASYVKHH--PKKIALIFAAMRKFARALEEDGWTVAYTQL 75

Query: 85  SNFDDSIEWLDSYCL---QQRVTKLFYNRQYEINEVRRDKLLE------------KRLQH 129
            + +++   +        Q   T++      E  E R    L+            + L  
Sbjct: 76  DDTENAGSIVGELLRRAEQTGATEVLA---TEPGEWRLIDKLKYAPLKVEVLPDDRFLSS 132

Query: 130 RVICKSFDD-----SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS-------- 176
               +++ D      +      +      + +   P       +                
Sbjct: 133 HSEFETWADGRKALRMEYFYREMRRKTGLLMEGDKPAGDKWNFDHDNRKAAPDDVTVDGP 192

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           L      +T  V      RF D         F      AL  L  F +  +  + + +D 
Sbjct: 193 LQFEPDAITREVLELVAARFGDSFGDLEPFWFATTRAEALQALDHFIEHALPRFGDYQDA 252

Query: 237 PAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFY 291
                     + +SPYL+IG+L P +               P +    ++ ++I WRE+ 
Sbjct: 253 MLNDNQFLYHAVISPYLNIGLLGPLEI-CEAAAAAYAKGDAPINAVEGFIRQIIGWREYV 311

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           R +          +  +  T  + W            G T    +  A+ Q  +  + H+
Sbjct: 312 RGIYFLEGPDYTQRNVLGHTRDLPW------FYWG--GETRMNCVSKAVAQTQSEAYAHH 363

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
             R++          +D     E++++   D  
Sbjct: 364 IQRLMVTGNFALLAGIDPHQVHEWYLAVYADAF 396


>gi|332993098|gb|AEF03153.1| deoxyribodipyrimidine photolyase-related protein [Alteromonas sp.
           SN2]
          Length = 512

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 75/206 (36%), Gaps = 14/206 (6%)

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AI 239
           +T  V       F D+        F +   +AL +L  F +E++ ++ + +D        
Sbjct: 203 ITQDVIDLVEKEFSDHFGDISPFHFAVTRDDALTVLSDFIEERLPHFGQYQDAMVEGKPW 262

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY 298
              S ++ YL+ G+LSP++  +  +  +      P +    ++ + L WREF R     +
Sbjct: 263 LYHSHIAFYLNCGLLSPKEAIDAAESAYY-AGTAPLNSVEGFIRQILGWREFVRGFYWHF 321

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                   +         N +  L   +  G T    +   +++     + H+  R++  
Sbjct: 322 MPSLKSDNYF--------NHNRSLPDFFWNGQTNMNCMRQCIKETQANAYAHHIQRLMVL 373

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGD 384
                   +     +++++    D  
Sbjct: 374 GNFCLLTGLSPEEVQQWYLLVYADAY 399


>gi|163738168|ref|ZP_02145584.1| DNA gyrase subunit B [Phaeobacter gallaeciensis BS107]
 gi|161388784|gb|EDQ13137.1| DNA gyrase subunit B [Phaeobacter gallaeciensis BS107]
          Length = 516

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 82/244 (33%), Gaps = 20/244 (8%)

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK---VY 228
              + +     R+T  V      RF     +     F +    AL  L  F         
Sbjct: 201 FMPKPMRCDPDRITQDVLELVEQRFPGNFGRLTPFWFAVTRAAALKALDHFIDVALPLFG 260

Query: 229 YYVEQR-DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI- 286
            Y +   D       S LS Y++IG+L+P +     +  + +    P +    ++ ++I 
Sbjct: 261 DYQDAMLDGEPFLYHSLLSQYINIGLLNPLEVCRSAERAYYE-GHAPLNAVEGFIRQIIG 319

Query: 287 WREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           WRE+ R +     P            +         L   +  G TG   + AA+ Q   
Sbjct: 320 WREYMRGIYWLKMPGYTRENALGAKRD---------LPDFYWSGETGMACMAAAITQTRD 370

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD---LASNNGGW-QWAASTGND 401
             + H+  R++          ++     E++++   D      A N  G  Q+A      
Sbjct: 371 EAYAHHIQRLMVTGNFAMLAGINPHQVHEWYLAVYADAYEWVEAPNVIGMSQFADGGLLG 430

Query: 402 SVPY 405
           S PY
Sbjct: 431 SKPY 434


>gi|158999384|gb|ABW87016.1| cryptochrome [Musca domestica]
          Length = 72

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 387 SNNGGWQWAASTGNDSVPYFR-IFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIHAPHS 445
              G W W +S+  + +     +  P    KR DP GT+I+ ++PEL  VP  +IH P  
Sbjct: 1   VCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPLGTYIKQYVPELAKVPQLFIHEPWR 60

Query: 446 WLDKND 451
              K  
Sbjct: 61  MPLKEQ 66


>gi|219850169|ref|YP_002464602.1| deoxyribodipyrimidine photolyase-related protein [Chloroflexus
           aggregans DSM 9485]
 gi|219544428|gb|ACL26166.1| deoxyribodipyrimidine photolyase-related protein [Chloroflexus
           aggregans DSM 9485]
          Length = 497

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/384 (13%), Positives = 113/384 (29%), Gaps = 64/384 (16%)

Query: 50  QHGISARQSHFIYASLLQVQK--------------------SLSQKGIVFQYHQCSNFDD 89
             G++  +   +  SL ++ +                     L   G         +F  
Sbjct: 19  HPGLAPNRRVVLIESLARLNQRPYHRHKLVLIISAMRHYAAELRAAGYDVDLRVAPDF-- 76

Query: 90  SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL----LPP- 144
            +  L  +     V  L+     E    +    L   L   +      +++      PP 
Sbjct: 77  -LSGLRDHVNTFGVQHLYCLAAAEYATRQFQHRLTAEL--GIPVTILPNTLFLVERFPPP 133

Query: 145 -----------------GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
                            G ++    Q       F +   +      +             
Sbjct: 134 RSPALMEPFYRMMRRQTGLLIEPDGQPTGGVWNFDRENRRRYDGRPVPPPLRFPPDTITR 193

Query: 188 VTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----T 242
            T +++     +   +++    P+    AL  L  F   ++  +    D  + +      
Sbjct: 194 QTIADLAVACPHAIGSVEEFDLPVTRAQALTALDDFITHRLPDFGPFEDAMSAEHELLFH 253

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREF-YRHLMAFYPS 300
           S+LSP L+IG+L P +        + +    P S    ++ ++I WRE+ Y       P 
Sbjct: 254 SRLSPLLNIGLLDPLETAQAAVNAY-ERGHAPLSSVEGFVRQIIGWREYIYYRYWELMPD 312

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
           +              W  +  L   +  G T    +   ++++   G+ H+  R++    
Sbjct: 313 LLQANA---------WQAERPLPAWYWTGQTRMRCLHCVIQRVLQNGYCHHIERLMVLCN 363

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGD 384
                 V  +   ++F+   +D  
Sbjct: 364 FAMLAGVQPQAVNDWFLECYVDAY 387


>gi|145530798|ref|XP_001451171.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418815|emb|CAK83774.1| unnamed protein product [Paramecium tetraurelia]
          Length = 552

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 18/211 (8%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCW 260
           + ++PI   +    L  F K+K+  +   +D           S LSP ++IG+++     
Sbjct: 266 NTIYPIDHDSTEEWLDCFLKQKLSEFGPYQDAVHSDYPFVNHSILSPMMNIGLITSSLIV 325

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           ++  + +      P      +L ++I WRE+ R L  F     M   F         N  
Sbjct: 326 DKTLQYYKQNKA-PIQSVEGFLRQVIGWREYVRLLYFFEGEQQMKANFF--------NHQ 376

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
           + L   W  G T  P +D  ++++    ++H+  R++     +    ++ +   ++FM  
Sbjct: 377 NELSNNWYTGQTKLPPVDHMIQKVIKYAYLHHIERLMYIGNTMLLSEINPKEVFKWFMEV 436

Query: 380 LLDGD---LASNNGGW-QWAASTGNDSVPYF 406
            +D     +A N  G  Q A      + PY 
Sbjct: 437 HIDSYEWVMAPNVFGMTQHADGGMMMTRPYI 467


>gi|269795906|ref|YP_003315361.1| deoxyribodipyrimidine photolyase-like protein [Sanguibacter
           keddieii DSM 10542]
 gi|269098091|gb|ACZ22527.1| deoxyribodipyrimidine photolyase-related protein [Sanguibacter
           keddieii DSM 10542]
          Length = 532

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 74/196 (37%), Gaps = 15/196 (7%)

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLS 250
            F D P       +P     A   L +F ++++  +    D  + Q      S L+  L+
Sbjct: 239 EFPDAPGDPHLFAWPTSAAEARAHLAEFVRDRLRDFGPYEDAISAQHPFVAHSLLTASLN 298

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIP 309
           +G+L PR+    + ++       P +    ++ ++I WRE+ R     +         + 
Sbjct: 299 VGLLDPREVVQAVLDD--AGPDTPLASVEGFVRQVIGWREYMRATYRVHGRRMRTSNRLD 356

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
              ++           W+   TG   +D  + ++ T G+ H+  R++     +  L V  
Sbjct: 357 HQNRLG--------DGWRDATTGLAPVDLVVSRVLTTGYAHHIERLMVLGSAMCLLRVHP 408

Query: 370 RIGEEYFMSQLLDGDL 385
               E+F +  +D   
Sbjct: 409 DEVYEWFTAMFVDAYD 424


>gi|187234364|gb|ACD01434.1| DNA photolyase II [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|195976055|gb|ACG63559.1| DNA photolyase II [Plusia acuta nucleopolyhedrovirus]
          Length = 243

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 8/160 (5%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
               G  +AL++L +F +  +  Y   R+ P ++  S +SP+   G +S ++    L   
Sbjct: 81  WIEPGYISALNVLARFIRCNLLKYKMSRNNPVLKTQSNMSPFYHFGQISVQRVMLHLNSL 140

Query: 267 FVDLLIKP-KSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE------KIEWNK 318
            ++       S    ++ E  + RE   +   +  +         W +      K +  +
Sbjct: 141 KINKNDSGIDSNINDYIEECFVRRELADNFCFYNSNYDTFLGAPNWAKETLVIHKSDSRQ 200

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             + L  ++   T   + +AA RQL   G +H  LRM  A
Sbjct: 201 YIYSLLQFEHNQTHDELWNAAQRQLRNEGKIHGYLRMYWA 240


>gi|163743762|ref|ZP_02151135.1| deoxyribodipyrimidine photolyase-related protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161382911|gb|EDQ07307.1| deoxyribodipyrimidine photolyase-related protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 516

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 73/219 (33%), Gaps = 16/219 (7%)

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK---VY 228
              + +     R+T  V      RF     +     F +    AL  L  F         
Sbjct: 201 FMPKPMRCDPDRITQDVLELVEQRFPRNFGRLTPFWFAVTRAAALKALDHFIDVALPLFG 260

Query: 229 YYVEQR-DIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI- 286
            Y +   D       S LS Y++IG+L+P +     +  + +    P +    ++ ++I 
Sbjct: 261 DYQDAMLDGEPFLYHSLLSQYINIGLLNPLEVCRSAERAYYE-GHAPLNAVEGFIRQIIG 319

Query: 287 WREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           WRE+ R +     P            +         L   +  G TG   + AA+ Q   
Sbjct: 320 WREYMRGIYWLKMPGYTRENALGARRD---------LPDFYWSGETGMACMAAAITQTRD 370

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
             + H+  R++          ++     E++++   D  
Sbjct: 371 EAYAHHIQRLMVTGNFAMLAGINPHQVHEWYLAVYADAY 409


>gi|309779651|ref|ZP_07674410.1| deoxyribodipyrimidine photolyase-like protein [Ralstonia sp.
           5_7_47FAA]
 gi|308921592|gb|EFP67230.1| deoxyribodipyrimidine photolyase-like protein [Ralstonia sp.
           5_7_47FAA]
          Length = 513

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 135/419 (32%), Gaps = 58/419 (13%)

Query: 31  HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY---HQCSNF 87
            ++DA V+ V +   ++       A++   I+A++    + L   G   +Y      SN 
Sbjct: 24  ADADADVVYVLMEVRQETDYVLHHAQKILAIFAAMRDFARGLRAAGHRVRYVAIDDGSNR 83

Query: 88  DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD--------- 138
               E L +        ++ +      +E R D+ L +  + + +  S  D         
Sbjct: 84  QSVTENLAALARHYGAERVEWQ---SPDEWRLDEQLRRWAEAQSLSTSEVDTEHFLTGRH 140

Query: 139 ----------SVLLPP---------GSILNHALQMYKVYTPFRKALIQNLVQADLRSL-- 177
                       L+           G +L+           F     +    +       
Sbjct: 141 ELAAMFEGRKQWLMERFYREMRRRFGVLLDGTGAPESGQWNFDHDNRKPWRGSPPEPADA 200

Query: 178 -PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
            PV   R        +  + F  P QA    +P+    AL  L  F  + + ++ +  D 
Sbjct: 201 RPVHDHRALWETIERSGVKSFGNP-QAGALRWPLNRTEALACLDAFVAQVLPHFGDFEDA 259

Query: 237 PAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFY 291
            +        S LS  L++ +L+PR+  +R +  +      P      ++ + L WRE+ 
Sbjct: 260 MSSGHQRLFHSLLSFSLNVKMLNPREVIDRAEAAYRH-GKAPLPAVEGFIRQILGWREYV 318

Query: 292 RHL-MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           R +  A  P                 N D+ L   +  G T    +  A+ Q       H
Sbjct: 319 RGIYWAQMPGYASCNVL---------NHDAPLPSWFWSGKTQMRCLQLAIGQSLQTAHAH 369

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
           +  R++          +       +++   +D      L +  G  QWA      + PY
Sbjct: 370 HIQRLMVIGNFALLAGLAPDEVHRWYLGVYIDAFEWVELPNTVGMSQWADGGRIATKPY 428


>gi|114705215|ref|ZP_01438123.1| hypothetical protein FP2506_09761 [Fulvimarina pelagi HTCC2506]
 gi|114540000|gb|EAU43120.1| hypothetical protein FP2506_09761 [Fulvimarina pelagi HTCC2506]
          Length = 511

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 130/422 (30%), Gaps = 59/422 (13%)

Query: 32  NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD-- 89
                V+   +A    + +H    R+  F+++++      + ++ +   Y    + ++  
Sbjct: 23  EDGDVVLMCEVADEANYVRHH--QRKIAFLFSAMRHFADDIRERDVTVDYVTLDDAENTG 80

Query: 90  -SIEWLDSYCLQQRVTKLFYNR--QYEINEVRRDKL------LEKRLQHRVICKSFDDSV 140
              E L     + +   +      ++ + E+ RD        +E R   R IC    D  
Sbjct: 81  SFTEELKRAVKRHQPDSVVVTEPGEWRVLEMMRDWRETLDCPVEIRNDDRFIC----DHE 136

Query: 141 LLPPG--------------SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                               +  +   +     P       +    +     + A     
Sbjct: 137 TFDKWAEGNKELRQEYFYREMRKYTSYLMDGNKPAEGKWNFDHDNREPLKKRITAPERPN 196

Query: 187 PVTPSNIPRFFDYPFQAIDPMF--------PIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
                      D   +     F        P+  + ALH LR F  E +  +   +D   
Sbjct: 197 YTVDETTEAVLDLVGKRFGNHFGSLENFDYPVTRRQALHYLRWFLDEALPDFGTYQDAMR 256

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRH 293
                   S LS  ++ G+L PR+   R ++ + +    P +    ++ ++I WREF R 
Sbjct: 257 EGAPLLFHSHLSALINCGLLDPREVCERAEDAYRE-GKAPINAVEGFIRQIIGWREFIRG 315

Query: 294 LMAF-YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
           +     P            +         L   +  G T    +  + +++    + H+ 
Sbjct: 316 VYWREMPDYASSNKLNAQRK---------LPDFFWTGETDLNCLKQSFKEVRESAYNHHI 366

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPYFRI 408
            R++           D R  +E+++    D      + +  G   +A      S PY   
Sbjct: 367 QRLMVIGNFCLLCGFDPREVQEWYLVVYHDAYEWVEMPNVVGMILYADGGLFASKPYAAS 426

Query: 409 FN 410
            N
Sbjct: 427 SN 428


>gi|83953405|ref|ZP_00962127.1| hypothetical protein NAS141_13891 [Sulfitobacter sp. NAS-14.1]
 gi|83842373|gb|EAP81541.1| hypothetical protein NAS141_13891 [Sulfitobacter sp. NAS-14.1]
          Length = 509

 Score = 65.0 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 68/396 (17%), Positives = 132/396 (33%), Gaps = 54/396 (13%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL  A    D  V+A  +A    + +H    ++   I+A++ +   +L Q G    Y Q 
Sbjct: 19  ALAQADKARDTVVMA-EVADEAAYVRHH--PKKIALIFAAMRKFAHALEQDGWTVAYTQL 75

Query: 85  SNFDDS---IEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD--- 138
            + D++   +  L     Q   +++      E  E R   L++K     +      D   
Sbjct: 76  DDTDNAGSIVGELLRRAAQTGASEVLA---TEPGEWR---LIDKLKYAPLKVHLLPDDRF 129

Query: 139 ---SVLLPPGSILNHALQMYKVYTPFR-----------KALIQNLVQADLRSLPVPAIRL 184
                     +    AL+M   Y   R            A  +     D R      + +
Sbjct: 130 LATHAEFEAWAEGRKALRMEYFYREMRRKTGLLMAGDQPAGGKWNFDHDNRKAAPEDVTV 189

Query: 185 TGPVTPSNIPRFFDY----------PFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQ 233
            GP+         +            F A++P +       AL  L  F    +  + + 
Sbjct: 190 DGPLRFDPDATTREVLELVQARFGDNFGALEPFWFATTRAEALQALDHFIANALPRFGDY 249

Query: 234 RDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WR 288
           +D    +      + LSPYL+IG+L+  +      + +      P + A  ++ ++I WR
Sbjct: 250 QDAMLNENEFLYHAILSPYLNIGLLNVTEICEAAADAYAS-GHAPINAAEGFIRQIIGWR 308

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+ R +          +  +     + W            G T    +  A+ Q  T  +
Sbjct: 309 EYVRGIYFLEGPDYTARNILGHDRDLPW------FYWG--GETQMNCVAKAVGQTRTQAY 360

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            H+  R++          +D     E++++   D  
Sbjct: 361 AHHIQRLMVTGNFALLAGIDPAQVHEWYLAVYADAF 396


>gi|292655388|ref|YP_003535285.1| cryptochrome/photolyase-related protein Phr3 [Haloferax volcanii
           DS2]
 gi|291372510|gb|ADE04737.1| cryptochrome/photolyase-related protein Phr3 [Haloferax volcanii
           DS2]
          Length = 498

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 128/406 (31%), Gaps = 47/406 (11%)

Query: 28  AACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF 87
           AA   SD +V  + I       +     ++   ++A++   +  L ++G    Y Q   F
Sbjct: 14  AAPLQSDDRV--LMIEAHAFGDRLPYHPQKLALVFAAMRHFRDDLRERGYEVTYLQTETF 71

Query: 88  DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSI 147
               E LD Y        L            R + L    +   +    +D  L  P   
Sbjct: 72  G---EGLDRYFDAAPGDDLVVMDPPSHGAGERLRGLVSA-RGGSLTLVENDLFLTTPADF 127

Query: 148 LNHALQ----MYKVYTPF------------------RKALIQNLVQADLRSLPVPAIRLT 185
            + A        + +                          QN         P  A R  
Sbjct: 128 DDWAGDADSYRQEHWYRHARRETGVLMDGDDPVGGEWNYDDQNRETPPEGWTPPEAPRFE 187

Query: 186 GPVTPSNIPRF--FDYPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDIP--- 237
              T   +       YP     P   ++P+  + A   L  F + ++  +   +D     
Sbjct: 188 PDETTREVIELVRERYPDAWGSPEPFVWPVTREAARQALSHFVEVRLPEFGPYQDAMVDG 247

Query: 238 -AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLM 295
                 S LS   ++G+L PR+    ++E + +    P + A  ++ + L WREF RH+ 
Sbjct: 248 EWALCHSLLSAATNLGLLHPREAVEAVEEAY-ERGDAPLNSAEGFVRQVLGWREFVRHVY 306

Query: 296 AFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
                    +      E  + ++   L +A+  G T    +  A+  +   G+ H+  R+
Sbjct: 307 --------RRSMPELAEANQLDQTEPLPEAYWTGETDMNCLSEAVGHVRDRGYAHHIERL 358

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +  S       VD    + +F    +D              S   D
Sbjct: 359 MVLSNFALVYGVDPAELDRWFHLGFVDAFHWVTTPNVVAMGSFATD 404


>gi|297743900|emb|CBI36870.3| unnamed protein product [Vitis vinifera]
          Length = 190

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 25/176 (14%)

Query: 154 MYKVYTPFRKALIQNLVQADLRSL-PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP--- 209
           M   Y  F++ +    ++  + +L  +  +   G V    IP   D        +     
Sbjct: 1   MPTNYGGFKEKVKGLEIRKTIATLDQLRGLPARGDVEAGEIPSLLDLGLSPSATLPQNGM 60

Query: 210 --------IGEQNALHILRKFCKEKVY---YYVEQRDIPAIQGTSQLSPYLSIGVLSPRQ 258
                    GE  AL  L+KF  E             I     + ++SP+L++G LSPR 
Sbjct: 61  STANGSLVGGETEALQRLKKFAAECQAQPPKGAANDSIYGANFSCKISPWLAMGCLSPRS 120

Query: 259 CWNRLKEEFVDLLIKPKS----------GAFSWLNELIWREFYRHLMAFYPSVCMG 304
            ++ +K+     +    S          G    + EL+WR+F+R +   Y S    
Sbjct: 121 MFDEIKKSASRTISASTSKDGGSGQSDTGMNWLMFELMWRDFFRFITKKYSSATKQ 176


>gi|171057935|ref|YP_001790284.1| deoxyribodipyrimidine photolyase-like protein [Leptothrix cholodnii
           SP-6]
 gi|170775380|gb|ACB33519.1| deoxyribodipyrimidine photolyase-related protein [Leptothrix
           cholodnii SP-6]
          Length = 513

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 133/414 (32%), Gaps = 57/414 (13%)

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN----------FDDSIEWL--------- 94
           S  +S    A++    ++L   G      +  +              IE L         
Sbjct: 47  SKPRSVMFLAAMRHFAQALRAAGRPLHPMRLDDPTNQGSLAAQLQADIERLRPARLVMTA 106

Query: 95  DSYCLQQRVTKLFYNRQYEINEVRRDKL----LEKRLQHRVICKSFDDSVLLP----PGS 146
                  +  K          E+R D+     + +   H    KS               
Sbjct: 107 PGDWRVLQAIKDVAQAHGLPLEIREDRHFYGSVREFAAHARGRKSLRMEYFYREMRKRHG 166

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP----RFFDYPFQ 202
           +L    Q       F     +    A   S+P  A+     +T   I     R  D+P +
Sbjct: 167 VLMQGEQPEGGQWNFDADNREAFGAAGPGSVPPRAVFEPDAMTREVIALVEARLADHPGR 226

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI--PAIQG--TSQLSPYLSIGVLSPRQ 258
             D  +P+  + AL  L++F  E++  +   +D   P       + LS  L++ +L+PR+
Sbjct: 227 LDDFAWPVSREQALVALQRFVTERLPLFGRYQDAMWPGEPWLHHAHLSAALNLKLLNPRE 286

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY-PSVCMGKPFIPWTEKIEW 316
             +     +      P +    ++ + L WRE+ R +     P            +   W
Sbjct: 287 VVDAAVAAYR-AGAAPLASVEGFVRQILGWREYVRGIYWTRMPGYAELNTLDAQEDLPAW 345

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
                       G T    +  A+ Q    G+ H+  R++          V  +    ++
Sbjct: 346 YW---------TGATDMACLRDAIGQTLQHGYAHHIQRLMVTGLFALMYGVQPQQVHAWY 396

Query: 377 MSQLLDG----DLASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRFDP 420
           ++  +D     +L +  G  Q+A      S P      Y +  +P  +G R+DP
Sbjct: 397 LAVYVDAVEWVELPNTLGMSQYADGGLMASKPYVATGKYIQRMSPYCKGCRYDP 450


>gi|318041432|ref|ZP_07973388.1| deoxyribodipyrimidine photolyase-like protein protein
           [Synechococcus sp. CB0101]
          Length = 516

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 80/236 (33%), Gaps = 20/236 (8%)

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSI 251
               P       + +  Q AL +L  F   ++  +   +D           + LSPYL++
Sbjct: 219 LAPLPGDLEPFGWAVTRQQALAVLEHFIATRLAGFGPYQDAMVSGEPTLWHALLSPYLNL 278

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT 311
           G+L P +   RL++  ++  +            L WRE+   L  ++ S           
Sbjct: 279 GLLHPLEVIRRLEQAGLEQQVPLAGLEGVIRQILGWREYTHGLYHWFGSDYPRLNHFHAA 338

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
             +    D       + G +G   +D    +L   G+ H+  R++  +       +D + 
Sbjct: 339 VPLPVWFD-------QLGGSGLRCLDTVFTELRRSGYAHHIQRLMVLANYGLIAGLDPQA 391

Query: 372 GEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
              +F    +DG          W   T    +  F      +  K +   G +I+ 
Sbjct: 392 LTAWFHRMFIDGHD--------WVMQTNVIGMGLF-ADGGRLASKPYAASGNYIKR 438


>gi|239994037|ref|ZP_04714561.1| deoxyribodipyrimidine photolyase-related protein [Alteromonas
           macleodii ATCC 27126]
          Length = 512

 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 60/421 (14%), Positives = 139/421 (33%), Gaps = 52/421 (12%)

Query: 24  KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
            A+  A  + D  ++A  +     + +H    ++  F+++++    K+L        Y  
Sbjct: 17  PAIANAVKSKDTILMA-EVREEATYVKHH--KKKIAFLFSAMRHFAKALRDDNFNVNYVH 73

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS--VL 141
            S+ ++  + L     +         +     E R  K +E+      I  S  D    L
Sbjct: 74  YSDKNNQGDLLAQVKHELNGNDFDEVKVTMPGEYRLLKSMEQWENVLGIPVSICDDNRFL 133

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLV---------------------------QADL 174
             P    + A    ++   F    ++                              Q   
Sbjct: 134 SSPQEFTDWAEGKKQLRMEFFYREMRRKHNVLMEGKNPIGGKWNYDAQNREAMPETQRVP 193

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
           +        +T  V       F D+     +  F +  ++AL +L  F +E++  + + +
Sbjct: 194 KHSTFEIDDITSKVIELVKSEFSDHFGDINNFHFAVTRKDALSVLNTFIEERLPNFGQYQ 253

Query: 235 DIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWRE 289
           D           S ++ YL+ G+L+P++  +  ++ +    + P + A  ++ + L WRE
Sbjct: 254 DAMVEGKPWLYHSHIAFYLNCGLLTPKEAIHAAEQAYHAGQV-PLNSAEGFIRQILGWRE 312

Query: 290 FYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           + R     + P++     F         N    L   +    T    +   +++     +
Sbjct: 313 YVRGFYWHFMPNLKTDNYF---------NNSRALPSFFWDAQTNMNCMRQCIKETQQNAY 363

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVP 404
            H+  R++          +     + +++    D      L +  G   ++      S P
Sbjct: 364 AHHIQRLMVIGNFSLLTELSPEEVQAWYLLVYADAYEWVELPNVAGMILYSDGGNLASKP 423

Query: 405 Y 405
           Y
Sbjct: 424 Y 424


>gi|254465841|ref|ZP_05079252.1| photolyase [Rhodobacterales bacterium Y4I]
 gi|206686749|gb|EDZ47231.1| photolyase [Rhodobacterales bacterium Y4I]
          Length = 515

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 142/419 (33%), Gaps = 52/419 (12%)

Query: 28  AACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AA  ++D     V+   +A    + +H    ++  F+++++    K+L + G    Y + 
Sbjct: 26  AALKDADPDRDIVLMAEVAEEAGYVRHH--KKKIAFLFSAMRHFAKALKEDGWQVHYVRL 83

Query: 85  SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS-FDDSVLLP 143
            + +++          +    +      E  E R    L+   +   I  S   DS  L 
Sbjct: 84  DDPENTGSLTGEIDRLRAAHPVARAVVTEPGEYRLKTALQDWAEAADIPLSMLQDSRFLC 143

Query: 144 ------PGSILNHALQMYKVYT------------------PFRKALIQNLVQADLRSLPV 179
                   +     L+M   Y                    +           D  +LP 
Sbjct: 144 SHERFGKWAEGRKQLRMEYFYREMRRETGLLMDGDEPEGGQWNFDHENRKPAEDGLTLPK 203

Query: 180 PAIRLTGPVTPSNIP----RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
           P       +T   +     +F D+        F +  ++AL  L +F  E +  + + +D
Sbjct: 204 PPETTPDEITEEVLDLVEEQFGDHFGTLRPFWFAVTREDALAALERFAGEALPDFGDYQD 263

Query: 236 IPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREF 290
                      S LS Y++ G+L P +   R++  + +    P + A  ++ ++I WRE+
Sbjct: 264 AMLEGEKFLYHSVLSQYINAGLLEPLEVCRRVERAYYE-GDAPLNAAEGFIRQIIGWREY 322

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R +          + F+  T  +           +    T    + AA+ Q     + H
Sbjct: 323 VRGIYWRNMPGYTEQNFLKATRALP--------GFYWTAETDMACVAAAVGQTRDEAYAH 374

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD---LASNNGGW-QWAASTGNDSVPY 405
           +  R++          VD     E++++   D      A N  G  Q+A      S PY
Sbjct: 375 HIQRLMVTGNFAMLAGVDPHQVHEWYLAVYADAYEWVEAPNVIGMSQYADGGLLGSKPY 433


>gi|254505796|ref|ZP_05117942.1| cryptochrome/photolyase [Vibrio parahaemolyticus 16]
 gi|219551449|gb|EED28428.1| cryptochrome/photolyase [Vibrio parahaemolyticus 16]
          Length = 460

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 125/384 (32%), Gaps = 53/384 (13%)

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           S     K L  + +     Q   + D    L S   Q + T L Y R    +E R  K L
Sbjct: 3   SFADELKQLGHQVLYLDLDQSEQYQDLPHLLASLVEQHQATHLEYQR---PDEYRLLKQL 59

Query: 124 EKRLQHRVICKSFDD-SVLLPPGSI--LNHALQMYKVYTPFRKALIQN------------ 168
           E      V     +    L P   I     A +   +   +RK   +             
Sbjct: 60  EALAIEGVKITMVESEHFLFPFEEIAEAFPAGKHILMEHFYRKMRRRFNLLMEGEKPVGG 119

Query: 169 -----------LVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQN 214
                        + DL S+P P   A  ++  +      +  +    +   ++PI    
Sbjct: 120 KWNLDANNRNAFKEDDLESIPNPLMFATDVSDILARLARHKVKNIGDVSNPLIWPINRSQ 179

Query: 215 ALHILRKFCKEKVYYYVEQRD-----IPAIQG--TSQLSPYLSIGVLSPRQCWNRLKEEF 267
           AL++L  FC+  +  +   +D      PA      S+LS  L+  ++SP +        F
Sbjct: 180 ALNLLAHFCQHCLPRFGFFQDAMTDRHPASWSLYHSRLSFALNSKLISPLEVVTSAITYF 239

Query: 268 VDLLIK-PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
                    S    ++ ++I WRE+ R +          +        +           
Sbjct: 240 EKANGDISLSQIEGFVRQIIGWREYIRAVYWANMPQYKTRNHFDAKRPLP--------NY 291

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG-- 383
           +  G +G   ++ A+ Q     + H+  R++          ++    +E+++   +D   
Sbjct: 292 FWTGKSGMNCLNQAVGQSLEHAYAHHIQRLMVTGNFTLLAGINPDEVDEWYLGIYIDAIE 351

Query: 384 --DLASNNGGWQWAASTGNDSVPY 405
             ++ +  G   +A      + PY
Sbjct: 352 WVEMPNTRGMALYADGGIVGTKPY 375


>gi|94501550|ref|ZP_01308068.1| hypothetical protein RED65_13062 [Oceanobacter sp. RED65]
 gi|94426368|gb|EAT11358.1| hypothetical protein RED65_13062 [Oceanobacter sp. RED65]
          Length = 516

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 135/401 (33%), Gaps = 57/401 (14%)

Query: 64  SLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
           ++ +  K+L + G   +         F +  E +     + + T   Y R    +E R  
Sbjct: 55  AMDKFAKALKKAGHEVLHLSLDDTQEFSNLPELIRHLTSKYKATTFHYQR---PDEYRLL 111

Query: 121 KLLEKR-LQHRVICKSFDDSVLLPPGSI-----LNHALQMYKVYTPFRKAL--------- 165
           + L    L +    +S  +  LLP   I      N A +M   Y   RK           
Sbjct: 112 EQLRNLDLPNTATKESDTEHFLLPFEEIEKTFKPNKAHRMEAFYRKMRKQFNILMNGDEP 171

Query: 166 ---IQNLVQADLRSLPVPAIR-LTGPVTPSN-----IPRFFDYPFQAIDPM-------FP 209
                N  Q +  SL   AI+ +  P++ S+     I R   +  +    +       +P
Sbjct: 172 AGGKWNFDQDNRGSLSEEAIQDIPEPISFSHDARSTIKRLDKHGVEYFGSLNNKQSFIWP 231

Query: 210 IGEQNALHILRKFCKE---KVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNR 262
           I    A  +L  FC     K   Y +   + +        S+LS  L+  ++SP +   +
Sbjct: 232 ITRSEARQVLDYFCDSLLPKFGLYQDAMTLHSAHAWSLYHSRLSFALNTKMISPLEVIQK 291

Query: 263 LKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
             + +        +    ++ + L WREF R +          K  +  +  +       
Sbjct: 292 AIQAYEQSNQINLAQIEGFVRQILGWREFIRAMYWINMPDYQNKNSLDASRSLP------ 345

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
               +  G T    + A + Q     + H+  R++          +D +  + +++   +
Sbjct: 346 --NYFWNGETKMQCMRACLSQSLEHAYAHHIQRLMIIGNFSLLAGLDPKAVDAWYLGVYI 403

Query: 382 DG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
           D     ++ +  G  Q+A      S PY    N   +   +
Sbjct: 404 DAIEWVEMPNTRGMSQFADGGLVASKPYAGSANYINKMSDY 444


>gi|254442469|ref|ZP_05055945.1| Deoxyribodipyrimidine photolyase-related protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256777|gb|EDY81085.1| Deoxyribodipyrimidine photolyase-related protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 508

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 126/416 (30%), Gaps = 65/416 (15%)

Query: 54  SARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           S  ++    +++    + L  KG+   Y +     D     +S C     +     R   
Sbjct: 44  SKIRTTLFLSAMRHFAEGLRDKGVEIHYRKLGEDPDCESLGESLCSFLEGSDFGRVRVTR 103

Query: 114 INEVRRDKLLEKR-LQHRVICKSFDDSVLLP---------------------------PG 145
             + R    L+   L   V  +  +D                                 G
Sbjct: 104 PGDHRVLGELKAACLSAGVPLEVVEDDSFYSSAEDFAAHREGRKQLRMEYFYREMRKKHG 163

Query: 146 SILNHALQMYKVYTPF----RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
            +++   +       F    RK   +   +     L  P   ++  V          +P 
Sbjct: 164 VLMDADGKPTGGKWNFDASNRKPFGKGGPERLAPRLRFPPDEISREVIQDVDTALTGHPG 223

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPR 257
           +     +P+   +AL  L  F + ++  +   +D           S L+  +++ +L PR
Sbjct: 224 ELSHFDWPVTPSDALRALESFIENELPLFGAYQDAMWSGEPYLSHSLLASSINLKLLDPR 283

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLM-AFYPSVCMGKPFIPWTEKIE 315
           +  +     + +    P      ++ + L WREF R +  AF P                
Sbjct: 284 EVVDAAVAAY-ESGHAPIESVEGFVRQILGWREFVRGIYGAFMPEYLERNALGAR----- 337

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
                 L   +  G T    I   + Q    G+ H+  R++          VD +   E+
Sbjct: 338 ----EPLPSFYWDGETEMNCIREVVTQTMKYGYAHHIQRLMVTGLYALLHGVDPKEVHEW 393

Query: 376 FMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           +++  +D     +L +  G  Q+A      S PY                G +I+ 
Sbjct: 394 YLAVYVDAVEWVELPNTLGMSQYADGGVMASKPYV-------------ATGKYIKR 436


>gi|170751994|ref|YP_001758254.1| deoxyribodipyrimidine photolyase-related protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658516|gb|ACB27571.1| deoxyribodipyrimidine photolyase-related protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 534

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 60/407 (14%), Positives = 132/407 (32%), Gaps = 49/407 (12%)

Query: 37  VIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD---SIEW 93
           V+ V +     + +H    ++  F++A++      L  +G+   Y + ++  +       
Sbjct: 40  VLIVEVRDEATYVRHHK--QKIAFLFAAMRHFAAELEAEGLAVDYVRLTDAGNTGSFTGE 97

Query: 94  LDSYCLQQRVTKLFYNR--QYEINEVRRDKL------LEKRLQHRVIC------KSFDDS 139
           L+    + R  ++      ++ + E+ +D        +E R  +R +C      +  +  
Sbjct: 98  LERAVARHRPDRVVVTEPGEWRVWEMMQDWRETLAIPVEIRADNRFLCPREDFSRWAEGR 157

Query: 140 VLLPPGSI----LNHALQMYKVYTPFRKALIQNLV--------QADLRSLPVPAIRLTGP 187
             L   +           +     P       +          Q     +      +T  
Sbjct: 158 HHLRMETFYRGMRRRTGLLMDDDEPAGGRWNYDPENRKRLPKGQQPPDRIGFQPDAVTRQ 217

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTS 243
           V       F D+        +P+   +AL  LR F  + +  + + +D           +
Sbjct: 218 VIALVEAEFGDHFGDLTGFSWPVTRADALAALRHFLADALPTFGDYQDAMKTGAPFLYHA 277

Query: 244 QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVC 302
            LSP L+ G+L+  +     +  + D  + P      ++ + L WRE+ R L        
Sbjct: 278 LLSPALNAGLLTAEEVCWAAERAYRD-GVAPLHCVEGFIRQILGWREYVRGLYWARMPGY 336

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                +     + W         +  G T    +   + +     + H+  R++      
Sbjct: 337 RDSNALGAGRDLPW--------FYWSGETALNCVAQVVGETRAHAYAHHIQRLMVTGNFA 388

Query: 363 KDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
               +D    EE+++    D      L + +G   WA      S PY
Sbjct: 389 LIAGLDPAQVEEWYLIVFADAYEWVELPNVHGMVLWADGGVMGSKPY 435


>gi|50914602|ref|YP_060574.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394]
 gi|50903676|gb|AAT87391.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10394]
          Length = 62

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 430 PELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQS 481
           P+L +VP +Y+H P              +  +YP PIVDH K     + +Y  AK+++
Sbjct: 2   PQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIVDHAKQREQAIAKYEWAKEKA 59


>gi|167739437|ref|ZP_02412211.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 14]
          Length = 53

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 1  MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPE 46
          M ++ +++  +VW R+DLR++D+ AL  A   S   VI V++    
Sbjct: 1  MSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDER 45


>gi|187234360|gb|ACD01432.1| DNA photolyase [Thysanoplusia orichalcea NPV]
          Length = 241

 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            G  NA+  L  F   K+Y Y   R+ P     S LSP+   G +S ++    L     +
Sbjct: 85  AGYINAVDTLADFIDTKLYKYKNLRNNPNENVQSNLSPWFHFGQISVQRVVLYLLSLDDN 144

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---------EKIEWNKDS 320
             IK     +     ++ RE   +   + P+         W          +K  +   S
Sbjct: 145 KAIKSHIETYVEEC-VVRRELADNYCFYNPNYDNLAGAPEWAIATLKKHAGDKRSYCYTS 203

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             L+      T   + +AA  +L   G MH  +RM  A
Sbjct: 204 DQLEYSA---THDDLWNAAQTELRAKGKMHGFMRMYWA 238


>gi|119486212|ref|ZP_01620272.1| hypothetical protein L8106_17752 [Lyngbya sp. PCC 8106]
 gi|119456703|gb|EAW37832.1| hypothetical protein L8106_17752 [Lyngbya sp. PCC 8106]
          Length = 501

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 13/219 (5%)

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
                L      +T                +     + +  Q AL +L+ F +E++  + 
Sbjct: 185 NPPHPLWFEPDEITQATIEQVNQLSLPLYGKIEPFAWAVTRQQALQVLQSFIQERLPNFG 244

Query: 232 EQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LI 286
             +D           + LSPYL++G+L P +     +  +    + P +    ++ + L 
Sbjct: 245 TYQDAMLTGEQTLWHALLSPYLNLGLLHPLEVIQAAENAYYQQNL-PLNCVEGFIRQVLG 303

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WRE+ + +     +    + +   T+ +           W    T    +   + Q+ T 
Sbjct: 304 WREYMQGIYQLMDADYSQRNWFNHTQPLP-------EFFWDAEQTDMNCLSQVLSQVETT 356

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           G+ H+  R++  S       +  +  E +F +  +D   
Sbjct: 357 GYAHHIQRLMVLSNFALITGLSPQEVENWFHAVFIDAYD 395


>gi|149924015|ref|ZP_01912399.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1]
 gi|149815144|gb|EDM74696.1| deoxyribodipyrimidine photolyase [Plesiocystis pacifica SIR-1]
          Length = 229

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 57/195 (29%), Gaps = 27/195 (13%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEE----------------FVDLLIKPKSGAFSWLN 283
             +S LSP+L  G +   Q  + +                              A  +L+
Sbjct: 1   DASSGLSPWLHFGQVGAHQVLHAVLRAEDWSPALLGEAKALRGSRRGWWGLSESAEGFLD 60

Query: 284 EL-IWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL-------LQAWKQGYTGFPI 335
           EL IWRE  +     +P   +    +P   +                L       T   I
Sbjct: 61  ELVIWRELGQVFCWHHPDAYLRYGSLPEWARTTLEDHREDDRPSPYTLAQLDGAQTHDEI 120

Query: 336 IDAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQLLDGDLASNNGGW 392
            +AA RQL   G MHN LRM+          D                LDG   ++  G 
Sbjct: 121 WNAAQRQLVHEGRMHNYLRMLWGKKILEWSADAEQAIERMIHLNDKYALDGRDPNSYSGI 180

Query: 393 QWAASTGNDSVPYFR 407
            W     + +    R
Sbjct: 181 FWVCGRFDRAWGPER 195


>gi|294339499|emb|CAZ87858.1| putative Deoxyribodipyrimidine photolyase-related protein
           [Thiomonas sp. 3As]
          Length = 519

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 60/382 (15%), Positives = 117/382 (30%), Gaps = 46/382 (12%)

Query: 39  AVFIATPEQWRQH-GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDS---IEWL 94
           AV++A   Q   H   S  +     A++      L   G+   Y +  +  ++      L
Sbjct: 37  AVWMAEVAQESTHVWSSKPRIALFLAAMRHFAADLRAAGLTVHYTELDDAANAGSLAAEL 96

Query: 95  DSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS------------------- 135
                + R T+L   +  +   ++  K     L   +  +                    
Sbjct: 97  QRAVQRLRPTQLVMTQPGDWRVMQSIKAAAAALGVPLEVREDRHFYASPTDFAAHARGRK 156

Query: 136 -----FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP 190
                F    +     +L    Q       F     +   ++    +P PA      +T 
Sbjct: 157 QLRMEFFYRAMRQRHDVLMEGDQPAGGQWNFDADNREAFPKSGPGHVPSPAQFAPDAITR 216

Query: 191 SNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GT 242
             I     RF  +P    D  +P+    AL  L +F +E++  + + +D           
Sbjct: 217 EVIALVNQRFASHPGMLADFAWPVTRSQALQALERFMRERLPQFGQWQDALWPNEPWLWH 276

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYPSV 301
           + LS  L++ +L+PR+     +  +        S        L WRE+ R +     P  
Sbjct: 277 AHLSAALNLKLLNPREVVEAAQTAWRQGQAPLHSAEGFIRQILGWREYVRGIYWTQMPGY 336

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                         W            G T    +  A+ Q    G+ H+  R++     
Sbjct: 337 AERNALGVQAPLPAWFW---------SGQTDMACLRDALAQTLRYGYAHHIQRLMVIGLY 387

Query: 362 VKDLLVDWRIGEEYFMSQLLDG 383
                V  +   ++F++  +D 
Sbjct: 388 ALLHGVQPQQVHQWFLAVYVDA 409


>gi|294669928|ref|ZP_06734951.1| hypothetical protein NEIELOOT_01785 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308200|gb|EFE49443.1| hypothetical protein NEIELOOT_01785 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 142

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 10  HLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
            L+    +LR+ DN AL+ A    D   +  F+  P        + RQ  F+  +L +++
Sbjct: 6   TLLHFHRNLRLHDNAALHIAA-GLDRPTVGAFVFPP------DCNPRQRVFLRQTLAELR 58

Query: 70  KSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR 110
             L+  GI          D     L  Y     V+ L   R
Sbjct: 59  GGLAALGIPLHVFTGDAADALNGLLARYPFAAFVSPLPVRR 99


>gi|52840460|ref|YP_094259.1| hypothetical protein lpg0205 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627571|gb|AAU26312.1| hypothetical protein lpg0205 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 512

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 61/419 (14%), Positives = 135/419 (32%), Gaps = 52/419 (12%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86
            AA +     V    +A    +  H    ++  F+++S+    + L +KG   +Y    +
Sbjct: 19  LAAINKQKDIVFLCEVAEETSYVPHH--PKKIAFLFSSMRHFAQQLKKKGYRVRYTTFDD 76

Query: 87  ---FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP 143
                   + L     +++V+ +      E   ++    L+ +L   V     D+  L  
Sbjct: 77  PRNQGSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHGLKSQLTIPVTLHE-DNRFLCK 135

Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQ------------------------ADLRSLPV 179
                N A +  ++   F   +++                              + S P 
Sbjct: 136 INEFRNWAKEKKQLRMEFFYRMMRQKYHLLVDNNGKPVGGTWNYDAQNRKNANHISSFPK 195

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRD 235
                   +T   +        +     +P    +  + AL     F +  +  +   +D
Sbjct: 196 RLEHTRDVITDEVLGLVSARFAKHFGQCYPFNLAVTREQALEEANYFMEHFLCNFGAYQD 255

Query: 236 IPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREF 290
                      S+LS YL+ G+L P +     ++ +    + P +    ++ + L WRE+
Sbjct: 256 AMLKDEISLYHSKLSVYLNAGLLLPLELCQMAEQAYFSKQM-PLNSVEGFIRQILGWREY 314

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R +   +        +      +            ++  TG   I   +RQ +T  + H
Sbjct: 315 VRGIYWLFMPDYGEMNYFNACRPLP------SFFWGEE--TGMFCIKEVVRQTSTEAYSH 366

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
           +  R++          +D +   E++++   D      L +  G   +A      S PY
Sbjct: 367 HIQRLMITGNFALLAGLDPKQVCEWYLAVYADAYEWVELPNTLGMALYADGGLMASKPY 425


>gi|269961333|ref|ZP_06175698.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833884|gb|EEZ87978.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 514

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 115/371 (30%), Gaps = 59/371 (15%)

Query: 57  QSHFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +    ++++ Q  +    +G   +        +FDD  + L  Y  +   +K  Y R   
Sbjct: 48  KVCAFFSAMEQFARERQSEGHQVLHLILDDTQSFDDLEQVLQHYVSEVGASKFEYQR--- 104

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS--------------------------I 147
            +E R  + L K     V+ +  D    L P                            I
Sbjct: 105 PDEYRLLEQLAKLKLDGVVTRCVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDI 164

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAI 204
           L    +       +       L   D+  LP P   +  + G +                
Sbjct: 165 LMQDGKPVGGKWNYDANNRNKLKAKDIEQLPQPLMFSTDVRGIIERLAKHDIKTIGNLEG 224

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVE-------QRDIPAIQGTSQLSPYLSIGVLSPR 257
           D ++PI    +L +L  FC+  +  +         Q D       S++S  L+  +L PR
Sbjct: 225 DLLWPINRAQSLSLLAHFCQVCLPLFGRFQDAMTGQHDAKWSLYHSRISFSLNSKLLHPR 284

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREF----YRHLMAFYPSVCMGKPFIPWTE 312
           +  +   + F        S    ++ + L WRE+    Y   M  YP            +
Sbjct: 285 EVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKKNELDAERKLPD 344

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
              WN           G T    +  A+ Q     + H+  R++          +D    
Sbjct: 345 FF-WN-----------GETKMACMRNAIEQSLDYAYAHHIQRLMVTGNFCLLTEIDPDQV 392

Query: 373 EEYFMSQLLDG 383
           +E+++   +D 
Sbjct: 393 DEWYLGIYVDA 403


>gi|220934569|ref|YP_002513468.1| DNA photolyase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995879|gb|ACL72481.1| DNA photolyase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 524

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 135/439 (30%), Gaps = 84/439 (19%)

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD--SIEWLDSYCLQQRVTKLFYNRQYE 113
            +S    A++   + +  Q G    YH+  +       E L +   + R  ++   R  +
Sbjct: 58  ARSTLFLAAMRHFRDACLQAGRPLVYHRLGHHPHGSLAEALATDLARLRPERVILTRPGD 117

Query: 114 ----------------INEVRRD---------------KLLEKRLQHRVICKSFDDSVLL 142
                             E+R D               +  + RL+H          VL+
Sbjct: 118 HRVLQSLTRVCDSAGVPLEIREDAHFLVSLESFRHWAGRRKQTRLEHFYRHVREQMGVLM 177

Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ 202
             G     A   +   T  RK L +         L      LT          F D+P  
Sbjct: 178 EDGE---PAGGRWNFDTENRKPLPRAGPGMLRAPLGFEPDALTREAMADVERHFPDHPGS 234

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQ 258
                +P+  + A   L  F   ++  +   +D           +++S  L++ ++SPR+
Sbjct: 235 LASFDWPVSPEQARAALEDFIDHRLPAFGPYQDALWTGEPWLYHARISAALNLKLISPRE 294

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
                +  + +    P +    ++ + L WRE+ R L   +           W E     
Sbjct: 295 VIEAAEAAWREGRA-PLASVEGFIRQVLGWREYVRGLYWQH--------MPEWLEWNALE 345

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTI-------GWMHNRLRMITASFLVKDLLVDWR 370
               L   +  G T        MR L          G+ H+  R++      + L V   
Sbjct: 346 AGEALPGFYWTGETD-------MRCLAETLGQTLELGYAHHIQRLMVTGLFAQLLGVRPP 398

Query: 371 IGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
              E++++  +D     +L +  G  Q+A      S PY                G +I+
Sbjct: 399 ALHEWYLAVYVDAVEWVELPNTLGMSQYADGGRMASKPYV-------------ASGQYIK 445

Query: 427 H---WLPELNNVPTQYIHA 442
               +       P Q +  
Sbjct: 446 RMSNYCEHCRYRPDQAVGE 464


>gi|91224259|ref|ZP_01259522.1| hypothetical protein V12G01_03210 [Vibrio alginolyticus 12G01]
 gi|91191170|gb|EAS77436.1| hypothetical protein V12G01_03210 [Vibrio alginolyticus 12G01]
          Length = 514

 Score = 63.5 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 114/368 (30%), Gaps = 53/368 (14%)

Query: 57  QSHFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +    ++++ Q  K    +G   +        +FDD  + L  Y  +   +K  Y R   
Sbjct: 48  KVCAFFSAMEQFAKERQSEGHQVLHLTLDDTQSFDDLEQVLQHYASEVGASKFEYQR--- 104

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS--------------------------I 147
            +E R  + L K     V+ +  D    L P                            I
Sbjct: 105 PDEYRLLEQLAKLKLDGVVTRCVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDI 164

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAI 204
           L    +       +       L   D+  LP P   +  + G +                
Sbjct: 165 LMQDGKPVGGKWNYDANNRNKLKAKDIEQLPQPLMFSTDIHGIIERLARHDIKTIGNLEG 224

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVE-------QRDIPAIQGTSQLSPYLSIGVLSPR 257
           D ++PI    +L +L  FC+  +  +         Q D       S++S  L+  +L PR
Sbjct: 225 DLLWPINRAQSLSLLAHFCQVCLPLFGRFQDAMTGQHDAKWSLYHSRISFSLNSKLLHPR 284

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEKIE 315
           +  +   + F        S    ++ + L WRE+ R    A  P            +   
Sbjct: 285 EVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKNNELGAERK--- 341

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
                 L   +  G T    +  A+ Q     + H+  R++          +D    +E+
Sbjct: 342 ------LPDFFWNGETKMACMRNAIGQSLDYAYAHHIQRLMVTGNFCLLTEIDPDQVDEW 395

Query: 376 FMSQLLDG 383
           ++   +D 
Sbjct: 396 YLGIYVDA 403


>gi|195657177|gb|ACG48056.1| hypothetical protein [Zea mays]
          Length = 207

 Score = 63.1 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 27/141 (19%)

Query: 188 VTPSNIPRFFDYPF-----------QAIDPMFPIGEQNALHILRKFCKE------KVYYY 230
           + P +IP   +               A+      GE  AL  L+KF  E      KV   
Sbjct: 50  LEPGDIPTLAELGLTAPPAMSQDSKPAVGSTLIGGETEALERLKKFAAECSMQPNKVDKS 109

Query: 231 VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK----------SGAFS 280
             Q  I     + ++SP+L+ G LSPR  +  LK+     +              +G   
Sbjct: 110 NTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATKAIPFGSTPKNNDGTSDAGTNW 169

Query: 281 WLNELIWREFYRHLMAFYPSV 301
            + EL+WR+F+R +   Y SV
Sbjct: 170 LMFELLWRDFFRFITKKYSSV 190


>gi|296135393|ref|YP_003642635.1| deoxyribodipyrimidine photolyase-related protein [Thiomonas
           intermedia K12]
 gi|295795515|gb|ADG30305.1| deoxyribodipyrimidine photolyase-related protein [Thiomonas
           intermedia K12]
          Length = 519

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/385 (16%), Positives = 121/385 (31%), Gaps = 52/385 (13%)

Query: 39  AVFIATPEQWRQH-GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY 97
           AV++A   Q   H   S  +     A++      L   G+   Y +  +  ++       
Sbjct: 37  AVWMAEVAQESTHVWSSKPRIALFLAAMRHFAADLRAAGLTVHYTELDDAANAGSLDAEL 96

Query: 98  CLQ---QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP-PGSILNHALQ 153
                  R T+L   +  +   ++  K       H V  +  +D      P     HA  
Sbjct: 97  QRAVQRLRPTQLVMTQPGDWRVLQSIKA--AAAAHGVPLELREDRHFFASPSDFATHARG 154

Query: 154 MYKVYTPFRKALIQNLVQADLR-------------------------SLPVPAIRLTGPV 188
             ++   F    ++      +                           +P PA      +
Sbjct: 155 RKQLRMEFFYRAMRQRHDVLMEGDQPAGGQWNFDADNREAFPKSGHGHVPSPAQFAPDAI 214

Query: 189 TPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ---- 240
           T   I     RF  +P    D  +P+    AL  L +F +E++  + + +D         
Sbjct: 215 TREVISVVNQRFASHPGTLADFAWPVTRPQALQALERFMRERLPQFGQWQDALWPNEPWL 274

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FY 298
             + LS  L++ +L+PR+     +  +      P   A  ++ + L WRE+ R +     
Sbjct: 275 WHAHLSAALNLKLLNPREVVEAAQTAWRQ-GEAPLHSAEGFIRQILGWREYVRGIYWTQM 333

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P                W            G T    +  A+ Q    G+ H+  R++  
Sbjct: 334 PGYAERNALGAQAPLPAWFW---------SGQTDMACLRDALAQTLRYGYAHHIQRLMVI 384

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDG 383
                   V  +   ++F++  +D 
Sbjct: 385 GLYALLHGVQPQQVHQWFLAVYVDA 409


>gi|330502149|ref|YP_004379018.1| deoxyribodipyrimidine photolyase-like protein [Pseudomonas
           mendocina NK-01]
 gi|328916435|gb|AEB57266.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           mendocina NK-01]
          Length = 517

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 133/418 (31%), Gaps = 59/418 (14%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN----------FDDSIEWLD 95
           E+        ++   I++++    ++L  +G+   Y    +               +WLD
Sbjct: 44  EEASHVPHHPKKIALIFSAMRHFAETLRAQGVQVHYVTLDDPHNSGSLPGELQRWTQWLD 103

Query: 96  --------------SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141
                            L+     + +++       R       + + ++  + F   + 
Sbjct: 104 PAEVHLTECGDWRLEQSLRHCGVSIHWHQDSRFLCTREAFAAWAKGRKQLRMEFFYREMR 163

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTGPVTPSNIPRFFDY 199
              G +LN           F     + L +       L +    +T  V      RF D+
Sbjct: 164 RTSGLLLNPDGTPEGDAWNFDADNRKALPKGVQPPAPLRIEPDAITAEVLELVSRRFADH 223

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLS 255
                   +P+    A  + + F    +  + + +D  A        S++S  L+IG+L 
Sbjct: 224 YGSLEGFDYPVTADEAERLWQYFLAHGLADFGDYQDAMADGEPFLFHSRISAALNIGLLD 283

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFY-PSVCMGKPFIPWTEK 313
            R+    ++  +    + P + A  ++ +LI WRE+ R +     P    G  F      
Sbjct: 284 LRRICAEVEAAYRAGEV-PLNAAEGFIRQLIGWREYVRGIYWLRMPEYAEGNRFG----- 337

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
                   L + +  G T    +  A+ Q     + H+  R++          +  +   
Sbjct: 338 ----NSRALPEFYWTGKTRMKCMRQAIGQTLEHAYAHHIQRLMVTGNFALLAGIAPKAIC 393

Query: 374 EYFMSQLLDGD----LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           +++++  +D      L +  G    A      S PY                G +I+ 
Sbjct: 394 DWYLAVYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 438


>gi|221068160|ref|ZP_03544265.1| deoxyribodipyrimidine photolyase-related protein [Comamonas
           testosteroni KF-1]
 gi|220713183|gb|EED68551.1| deoxyribodipyrimidine photolyase-related protein [Comamonas
           testosteroni KF-1]
          Length = 519

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/363 (14%), Positives = 107/363 (29%), Gaps = 52/363 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           I+A++    + L   G   +Y      SN       L +  +      + + +    +E 
Sbjct: 60  IFAAMRDFARQLRADGHRVRYVSIDDASNRQSIPGNLAALAVHYGAHTVQWQQ---PDEW 116

Query: 118 RRDKLLEKRLQ-HRVICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           R D  L+      ++ CK+ D    L     +        +         ++   +  L 
Sbjct: 117 RLDAQLQAWASSQQLTCKAVDSEHFLTARDDLATQMRGRRQWLMEHFYRTMRRRYRLLLD 176

Query: 176 SLPVPA------------IRLTGPVTPSNIPRFFDYPF----------------QAIDPM 207
               P                  P  P +     D+                  QA    
Sbjct: 177 EHEQPVGGQWNFDRDNRNPWPGTPAEPEDWRPLHDHSTLWEIVQRSNVQSFGDAQADALR 236

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           +P+  Q A+  L  F    + ++ +  D  + Q      S LS  L++ +L P +     
Sbjct: 237 WPLNRQEAMRCLEAFVTHALPHFGDYEDAMSSQAPRLFHSLLSFALNVKMLHPLEVLQCA 296

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNKDSH 321
           +  +      P +    ++ +L+ WRE+ R +  A  P                W     
Sbjct: 297 EAAWRS-GHAPLAAVEGFVRQLLGWREYIRGIYWAHMPGYESRNALDHHLSLPRWFW--- 352

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
                  G T    +  +++Q       H+  R++          +D      +++   +
Sbjct: 353 ------TGDTHMRCLQQSIKQSLQTAHAHHIQRLMVIGNFALLAGLDPVELHRWYLGIYI 406

Query: 382 DGD 384
           D  
Sbjct: 407 DAF 409


>gi|167720443|ref|ZP_02403679.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei DM98]
          Length = 108

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF 60
           + ++ +++  +VW R+DLR++D+ AL  A   S   VI V++       +    A +   
Sbjct: 49  LSSSISIAPAVVWFRDDLRVSDHPALMRAAE-SGRPVIGVYVFDERAGGRPLGGAARWWL 107

Query: 61  I 61
            
Sbjct: 108 H 108


>gi|329896902|ref|ZP_08271755.1| hypothetical protein IMCC3088_2406 [gamma proteobacterium IMCC3088]
 gi|328921529|gb|EGG28912.1| hypothetical protein IMCC3088_2406 [gamma proteobacterium IMCC3088]
          Length = 511

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 114/366 (31%), Gaps = 50/366 (13%)

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN--RQYE 113
            +  F++A++ +       KG   +Y      D  ++ L        V++  ++     E
Sbjct: 49  HKIAFLFAAMRKFADQARSKGYSVRYF---TIDQQVKTLLEAVQTTLVSQPIFDAVHLCE 105

Query: 114 INEVRRDKLLEKRLQH-RVICKSFDD------SVLLPPGSILNHALQMYKVYTPFRKALI 166
             E R  + +E       V C   +D             +      +M   Y   RK L 
Sbjct: 106 PGEYRLKREIETWADQLGVPCVVHEDRRFLCSHTEFKAWADRQKTFRMEYFYRGMRKRLN 165

Query: 167 ----------------------QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
                                         + +  P    T  V  +    F D+P    
Sbjct: 166 VLMDDDQPVGGQWNYDADNRSGWRNKDVIPKRIEFPIDATTQTVINTVEQCFSDHPGDLT 225

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL----SPYLSIGVLSPRQCW 260
              +      A   L +F +  +  + + +D  A + T+        YL+ G+L P    
Sbjct: 226 QFSYATDATQAQAHLAQFIQNFLPRFGQYQDALAEESTTLFHGLIGLYLNAGLLEPADVC 285

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNK 318
           ++ +  +      P +    ++ ++I WRE+ R +     P                WN 
Sbjct: 286 HQAEAAYR-AGSAPLAATEGFIRQIIGWREYVRGIYWYHMPRYATLN---------TWNA 335

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
              +   +  G T    +  +++Q    G+ H+  R++          +      +++++
Sbjct: 336 ARPVPSWFWSGNTQMRCLHKSIQQSLATGYAHHIQRLMVIGNFSLLAGLSVSEVCDWYLA 395

Query: 379 QLLDGD 384
             +D  
Sbjct: 396 MYVDAY 401


>gi|218506351|ref|ZP_03504229.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli Brasil
          5]
          Length = 57

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 3  ATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
          A  A    ++W R DLR+ DNKAL AA H S   +I ++I  PE      + A Q+ 
Sbjct: 2  AKDAAKPVILWFRKDLRLDDNKALNAA-HFSGRPIICLYIREPEAAGTGPLGAAQAW 57


>gi|182435389|ref|YP_001823108.1| hypothetical protein SGR_1596 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463905|dbj|BAG18425.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 505

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 17/208 (8%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           FP+  + AL  LR+F   ++  +    D       +   S LS  L++G+L P +C  R 
Sbjct: 224 FPVTRREALAALRRFVAHRLGDFGRYEDAMLAADPVMSHSLLSVPLNLGLLDPAECVERA 283

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIE-WNKDSH 321
           ++ +      P +    ++ ++  WRE+   L   +      +  +     +  W  D  
Sbjct: 284 EQAWR-AGEAPLNSVEGFVRQIAGWREYVWQLYWHFGEEYRTRNALRHRAPLPGWFLDLD 342

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
                         + A + Q+   GW H+  R++           D     ++F    +
Sbjct: 343 ADAVTAN------CLSAVLAQVRDTGWTHHIPRLMVLGSRALQDGWDPAAVTDWFHRCFV 396

Query: 382 DGD----LASNNGGWQWAASTGNDSVPY 405
           DG     L +  G  Q+A      + PY
Sbjct: 397 DGYDWVMLPNVVGMSQYADGGRMTTKPY 424


>gi|257094709|ref|YP_003168350.1| deoxyribodipyrimidine photolyase-like protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047233|gb|ACV36421.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 512

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 66/387 (17%), Positives = 125/387 (32%), Gaps = 54/387 (13%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDD---SIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           I+A++  + + L   G    Y    + D+     + LD+  ++  V  L Y      +E 
Sbjct: 53  IFAAMRDLARQLRAAGHRVHYLTIDDPDNRQALPDNLDALMIRFNVRALEYQ---TPDEW 109

Query: 118 RRDKLLEKRLQHRVI----CKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
           R D  L    + R I     +S     L    + L    + + +   +R   +Q+ V   
Sbjct: 110 RLDAQLADYGRSRSIPCRMVESEHFYTLRDEAARLFSGRKQWVMEKFYRHMRVQHRVLTH 169

Query: 174 LRSLPV----------PAIRLTGPVTPSNIPRFFDYPF----------------QAIDPM 207
             S PV                 P  P++     D+                   A    
Sbjct: 170 GASQPVGGQWNFDHDNRKPWPGLPSEPADFRASHDHSALWQTIVSAGVNSFGEANAGQLA 229

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           +P+   +AL  L  F ++ + ++   +D  + +      S LS  L+  +L PR+   R 
Sbjct: 230 WPLNRADALQQLDAFIEKALPHFGLFQDAMSHRAWRLFHSLLSFALNTKMLDPREVVARA 289

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           +  +    +   +        + WRE+ R    A  P       F        W  +   
Sbjct: 290 EAAWHAGCVSLATAEGFIRQIIGWREYVRGFYWAHMPEYVEQNVFDHTRALPGWFWN--- 346

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
                 G T    +  A+ Q     + H+  R++          +D      +++   +D
Sbjct: 347 ------GQTKMRCLAHAIGQSLEQAYAHHIQRLMVIGNFALLAGLDPAGVHRWYLGVYVD 400

Query: 383 GD----LASNNGGWQWAASTGNDSVPY 405
                 L +  G  Q+A      + PY
Sbjct: 401 AFEWVELPNTLGMSQFADGGLLATKPY 427


>gi|331006511|ref|ZP_08329810.1| hypothetical protein IMCC1989_380 [gamma proteobacterium IMCC1989]
 gi|330419679|gb|EGG94046.1| hypothetical protein IMCC1989_380 [gamma proteobacterium IMCC1989]
          Length = 517

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 77/217 (35%), Gaps = 14/217 (6%)

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                     ++T  V      RF D+       ++ +  + AL +L  F  E++  + +
Sbjct: 202 PPEPTRFTPDQITEDVLCLVEERFPDHFGDLRPFIYAVNREQALQVLEDFIAERLNDFGD 261

Query: 233 QRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-W 287
            +D           S +S YL+ G+L+P +   R+++E+      P      ++ ++I W
Sbjct: 262 YQDAMKQDSPWLYHSHISFYLNSGLLNPLEVVQRVEQEYHG-GSAPLESVEGFIRQVIGW 320

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           RE+ R L  +        P       +E   D         G T    I   +       
Sbjct: 321 REYVRGLYWY------KMPGYAEANFLEAKNDLPSFYWT--GDTKMNCIKQCVNDTKANS 372

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           + H+  R++        +  D +   E+++    D  
Sbjct: 373 YAHHIQRLMVLGNFALLMGADPKQVNEWYLLVYADAY 409


>gi|146306236|ref|YP_001186701.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           mendocina ymp]
 gi|145574437|gb|ABP83969.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           mendocina ymp]
          Length = 520

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/440 (14%), Positives = 138/440 (31%), Gaps = 59/440 (13%)

Query: 24  KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
            AL A           +     E+        ++   I++++    ++L  +GI   Y  
Sbjct: 25  PALGALAQIDARHDRVLLAEVMEEASHVPHHPKKIALIFSAMRHFAEALRTQGIQVHYVT 84

Query: 84  CSNFDDS---IEWLDSYCLQQRVTKLF---------------------YNRQYEINEVRR 119
             + D+S      L  +  +    ++                      +++       R 
Sbjct: 85  LDDPDNSGSLPGELQRWTQRLNPAEVHLTECGDWRLEQSLRHCGVPIHWHQDSRFLCTRE 144

Query: 120 DKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSL 177
                 + + ++  + F   +    G +LN           F     + L +      + 
Sbjct: 145 AFAAWAKDRKQLRMEFFYREMRRTSGLLLNPDGTPEGGAWNFDADNRKALPKEVRPPTAW 204

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP 237
            +    +T  V      RF ++        +P+  + A  + + F    +  + + +D  
Sbjct: 205 RIEPDAITHEVLALVGQRFTEHYGSLEGFDYPVTAEQAERLWQHFLANGLAEFGDYQDAM 264

Query: 238 AIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYR 292
           A        S++S  L+IG+L  R+    ++  +    + P + A  ++ +LI WRE+ R
Sbjct: 265 ADDEPFLFHSRISAALNIGLLDLRRVCAEVEAAYRAGDV-PLNAAEGFIRQLIGWREYVR 323

Query: 293 HLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            +     P    G  F              L + +  G T    +  A+ Q     + H+
Sbjct: 324 GIYWLRMPEYAEGNAFG---------NSRALPEFYWTGRTRMNCMRQAIGQTLEHAYAHH 374

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPYFR 407
             R++          +  +    ++++  +D      L +  G    A      S PY  
Sbjct: 375 IQRLMVTGNFALLAGIAPKAICGWYLAVYMDAFDWVELPNTLGMVMHADGGYLGSKPYC- 433

Query: 408 IFNPTIQGKRFDPQGTFIRH 427
                         G +I+ 
Sbjct: 434 ------------ASGQYIKR 441


>gi|213423099|ref|ZP_03356117.1| deoxyribodipyrimidine photolyase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 47

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/47 (76%), Positives = 40/47 (85%)

Query: 380 LLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           L+DGDLA+NNGGWQWAASTG D+ PYFRIFNPT Q +RFD  G FIR
Sbjct: 1   LIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQRERFDRDGEFIR 47


>gi|229917008|ref|YP_002885654.1| deoxyribodipyrimidine photolyase-related protein [Exiguobacterium
           sp. AT1b]
 gi|229468437|gb|ACQ70209.1| deoxyribodipyrimidine photolyase-related protein [Exiguobacterium
           sp. AT1b]
          Length = 493

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/380 (13%), Positives = 122/380 (32%), Gaps = 51/380 (13%)

Query: 38  IAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSY 97
           + V I    +        ++   I++++    + L  KG    YH+  +F    E  D++
Sbjct: 26  VIVMIEATSRATWRPYHKQKLVLIFSAMRHFAEELRDKGYTVDYHEADSFQ---EAWDNH 82

Query: 98  CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL------------PPG 145
             Q    ++       + +    K L++  +   + +  D  +               P 
Sbjct: 83  VKQYSPDEIHV---TAVTDEPMAKKLKQFGKKLKLVEHTDVPLFYLSKEEATETLGNEPW 139

Query: 146 SILNHALQMYKVYTPF---------RKALIQNLVQADLRSLPVPAI------RLTGPVTP 190
            +      M K +            + +  ++  +     L  P+        +T  V  
Sbjct: 140 RMDRFYRHMRKRFDVLLEEGKPRGGKWSFDEDNRKPPKEGLSFPSAVHFRPDSITKDVIE 199

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLS 246
                F ++P +     +P+    A   L +F KE++  +   +D           S LS
Sbjct: 200 KVESTFSEHPGEVTPFHWPVTHTEARRALNRFVKERLETFGPYQDAMMTDEPEMSHSLLS 259

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGK 305
             ++IG+L+PR+  +   +        P S    ++ + L WRE+ R +           
Sbjct: 260 AAINIGLLTPREVVDAACQA-----DAPLSSIEGFVRQILGWREYMRAVY------LSVM 308

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
           P        +  +D           T    +  +++ +      H+  R++         
Sbjct: 309 PGYEDVNTFKHERDLPSFFW--DAKTNLNCLHQSLKPVVAHAHNHHIQRLMVLGNYATLF 366

Query: 366 LVDWRIGEEYFMSQLLDGDL 385
            +  +   ++F    +D   
Sbjct: 367 EISPQQTSDWFNEMYIDAYD 386


>gi|114768847|ref|ZP_01446473.1| hypothetical protein OM2255_03935 [alpha proteobacterium HTCC2255]
 gi|114549764|gb|EAU52645.1| hypothetical protein OM2255_03935 [alpha proteobacterium HTCC2255]
          Length = 511

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 90/241 (37%), Gaps = 18/241 (7%)

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +S      ++T  V       F D+        F +  Q AL +L +F  +++  + + 
Sbjct: 192 PKSYSTQPDKITMEVINLVEKSFNDHFGDLKPFNFAVTRQQALVVLDEFIDKRLSMFGDF 251

Query: 234 RDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWR 288
           +D           S +S YL+ G+L+P +C   ++  + D    P +    ++ + L WR
Sbjct: 252 QDAMIEGEPWMFHSHISFYLNCGLLTPLECIKAVERAYYDNRA-PLNAVEGFIRQVLGWR 310

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+ R +  +       + F+    K+         + +  G T    +   + +     +
Sbjct: 311 EYIRGVYWYKMPTYKSENFLEAHRKLP--------EFYWTGQTDMNCLKQCINETKENSY 362

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVP 404
            H+  R++     V    ++     E+++S   D      L +  G   +A      S P
Sbjct: 363 AHHIQRLMVLGNFVLLAGINPDDVHEWYLSVYSDAYEWVELPNVTGMILYADGGILASKP 422

Query: 405 Y 405
           Y
Sbjct: 423 Y 423


>gi|269965488|ref|ZP_06179606.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829851|gb|EEZ84082.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 514

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/368 (16%), Positives = 114/368 (30%), Gaps = 53/368 (14%)

Query: 57  QSHFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +    ++++ Q  K    +G   +        +FDD  + L  Y  +   +K  Y R   
Sbjct: 48  KVCAFFSAMEQFAKERQSEGHQVLHLTLDDTQSFDDLEQVLQHYVSEVGASKFEYQR--- 104

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS--------------------------I 147
            +E R  + L K     V+ +  D    L P                            I
Sbjct: 105 PDEYRLLEQLAKLKLDGVVTRCVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDI 164

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAI 204
           L    +       +       L   D+  LP P   +  ++  +                
Sbjct: 165 LMQDGKPVGGKWNYDANNRNKLKAKDIEQLPQPLMFSTDVSDIIERLAKHDIKTIGNLEG 224

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVE-------QRDIPAIQGTSQLSPYLSIGVLSPR 257
           D ++PI    +L +L  FC+  +  +         Q D       S++S  L+  +L PR
Sbjct: 225 DLLWPINRAQSLSLLAHFCQVCLPLFGRFQDAMTGQHDAKWSLYHSRISFSLNSKLLHPR 284

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEKIE 315
           +  +   + F        S    ++ + L WRE+ R    A  P            +   
Sbjct: 285 EVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKKNELGAERK--- 341

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
                 L   +  G T    +  A+ Q     + H+  R++          +D    +E+
Sbjct: 342 ------LPNFFWSGETKMACMRNAIEQSLDYAYAHHIQRLMVIGNFCLLTEIDPDQVDEW 395

Query: 376 FMSQLLDG 383
           ++   +D 
Sbjct: 396 YLGIYVDA 403


>gi|118773269|gb|ABL14178.1| cryptochrome 2 [Meleagris gallopavo]
          Length = 144

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 426 RHWLPELNNVPTQYIHAPHSWLD------KNDLSLNYPLPIVDHKKACHHTLNQYYAAKK 479
           +  LP+L   P++YI+ P +  +      K  + ++YP P+V+H +     + +     +
Sbjct: 1   KRLLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQ 60

Query: 480 Q 480
           Q
Sbjct: 61  Q 61


>gi|163840006|ref|YP_001624411.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
 gi|162953482|gb|ABY22997.1| deoxyribodipyrimidine photolyase [Renibacterium salmoninarum ATCC
           33209]
          Length = 91

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 234 RDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRH 293
           RD PA+  TS+LSP+L  G LSP Q W  L++               + +E+ WREF  H
Sbjct: 3   RDNPAMAATSKLSPHLRFGELSPFQVWAALRQ----SPGIAAEDERVFRSEVGWREFCWH 58

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWN 317
           L+  +P +     +    +   W 
Sbjct: 59  LLYHHPDLADTN-YRRDFDAFRWQ 81


>gi|159488927|ref|XP_001702452.1| CPD photolyase type II [Chlamydomonas reinhardtii]
 gi|158271120|gb|EDO96947.1| CPD photolyase type II [Chlamydomonas reinhardtii]
          Length = 894

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/262 (20%), Positives = 76/262 (29%), Gaps = 67/262 (25%)

Query: 210 IGEQNALHILRKFCKEK-VYYYVEQRDI-PAIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
            G          + +   V  Y   R+      GTS++S YL  G++SP +         
Sbjct: 645 GGSGAGYARWDAWRRGGGVGRYAASRNDAMQRGGTSRMSAYLHWGMVSPFRV-------T 697

Query: 268 VDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHL- 322
            +      SG   +L+EL+ WRE                  +P   +        D    
Sbjct: 698 REAAASGGSGCAKFLDELLVWRELAYSFCFHRCGQLDSLAVLPRWAQDTLAAHASDPRAV 757

Query: 323 --LQAWKQGYT-----------------------------------GFPIIDAAMRQLNT 345
             LQ  + G T                                   G    DAA RQL+T
Sbjct: 758 RSLQQLETGTTGRVTLFVNYLLTTAFAPIWKMSSFGFISNRPGLPAGDTFWDAAQRQLST 817

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPY 405
            G +HN +RM              +    +F    LDG   ++ GG  W    G    P 
Sbjct: 818 HGELHNNVRMTWG-----------KAPLAWFA---LDGCDPASYGGVLW--CFGLFDGPK 861

Query: 406 FRIFNPTIQGKRFDPQGTFIRH 427
                P     R  P  +  R 
Sbjct: 862 DPASTPITGTLRRRPTSSHARR 883


>gi|262373183|ref|ZP_06066462.1| photolyase [Acinetobacter junii SH205]
 gi|262313208|gb|EEY94293.1| photolyase [Acinetobacter junii SH205]
          Length = 509

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 124/372 (33%), Gaps = 58/372 (15%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR---VTKLFYNRQ 111
            ++  FI++++    KSL  +G   +Y        +  ++D    Q +      L     
Sbjct: 44  PQKIAFIFSAMRHFAKSLKAQGWKIRYQTFDRTQAAQGFIDFIQAQLKKNPAEALII--- 100

Query: 112 YEINEVRRDKLLEKRLQHR--VICKSFDDSVLLP-PGSILNHA----------------- 151
            E  E R  + +     ++  +  +  +D      P +  N A                 
Sbjct: 101 TESGEFRLQQAIATTWSNQLQIPVQILNDDRFFCSPQAFRNWASNTKTLRMEFFYRKLRQ 160

Query: 152 --LQMYKVYTPFRKAL--------IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF 201
               +     P               N       +L     ++   V       F ++  
Sbjct: 161 QTGYLMNGNEPIGGKWNYDIENRQAWNKNDPIPSALQFDRDQIDLDVIELVKTEFKEHIG 220

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQG--TSQLSPYLSIGVLSPR 257
           Q     +    Q AL  L+ F   ++ ++ + +D           S LSPYL+ G+LSP+
Sbjct: 221 QINHFNWATTRQQALEALQYFIDYQLIHFGQYQDAMVSGKDYLFHSLLSPYLNCGLLSPK 280

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREF----YRHLMAFYPSVCMGKPFIPWTE 312
           +  +  ++ + D  + P + A  ++ + L WREF    Y   M  YP +   +      +
Sbjct: 281 EVCDAAQQAYFDHHV-PLNAAEGFIRQILGWREFIRGIYWLKMPTYPDLNELEADRNLPD 339

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
              W  ++ +L   +           A+R      + H+  R++          +  +  
Sbjct: 340 YF-WTAETKMLCLRE-----------ALRNSLENAYAHHIQRLMVIGNFTLLNGISPKQV 387

Query: 373 EEYFMSQLLDGD 384
            ++++S   D  
Sbjct: 388 NDWYLSVYADAF 399


>gi|326776029|ref|ZP_08235294.1| deoxyribodipyrimidine photolyase-related protein [Streptomyces cf.
           griseus XylebKG-1]
 gi|326656362|gb|EGE41208.1| deoxyribodipyrimidine photolyase-related protein [Streptomyces cf.
           griseus XylebKG-1]
          Length = 505

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 17/208 (8%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           FP+  + AL  LR+F   ++  +    D       +   S LS  L++G+L P +C  R 
Sbjct: 224 FPVTRREALAALRRFVAHRLGDFGRYEDAMLAADPVMSHSLLSVPLNLGLLDPAECVERA 283

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIE-WNKDSH 321
           ++ +      P +    ++ ++  WRE+   L   +      +  +     +  W  D  
Sbjct: 284 EQAWRS-GEAPLNSVEGFVRQIAGWREYVWQLYWHFGEEYRTRNALRHRAPLPGWFLDLD 342

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
                         + A + Q+   GW H+  R++           D     ++F    +
Sbjct: 343 ADAVTAN------CLSAVLAQVRDTGWTHHIPRLMVLGSRALQDGWDPAAVTDWFHRCFV 396

Query: 382 DGD----LASNNGGWQWAASTGNDSVPY 405
           DG     L +  G  Q+A      + PY
Sbjct: 397 DGYDWVMLPNVVGMSQYADGGRMTTKPY 424


>gi|264678128|ref|YP_003278035.1| deoxyribodipyrimidine photolyase-related protein [Comamonas
           testosteroni CNB-2]
 gi|262208641|gb|ACY32739.1| deoxyribodipyrimidine photolyase-related protein [Comamonas
           testosteroni CNB-2]
          Length = 519

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 107/362 (29%), Gaps = 50/362 (13%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           I+A++    + L   G   +Y      SN       L +  +      + + +    +E 
Sbjct: 60  IFAAMRDFARQLRSDGHRVRYVSIDDASNRQSIPGNLAALAVHYGAHTVQWQQ---PDEW 116

Query: 118 RRDKLLEKRLQ-HRVICKSFDD-SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR 175
           R D  L+      ++ C + D    L     +        +         ++   +  L 
Sbjct: 117 RLDAQLQAWASSQQLTCTAVDSEHFLTARDDLATQMRGRRQWLMEHFYRTMRRRYRLLLD 176

Query: 176 SLPVP------------AIRLTGPVTPSNIPRFFDYPF----------------QAIDPM 207
               P                  P  P +     D+                  QA    
Sbjct: 177 EHERPFGGQWNFDSDNRKPWPGTPAEPEDWRPLHDHSTLWEIVQRSNVQSFGDAQADALR 236

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           +P+  Q A+  L  F    + ++ +  D  + Q      S LS  L++ +L P +     
Sbjct: 237 WPLNRQEAMRCLEAFVTHALPHFGDYEDAMSSQAPRLFHSLLSFALNVKMLHPLEVLQCA 296

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           +  +      P +    ++ + L WRE+ R +   +      +  +     +        
Sbjct: 297 EAAWRS-GHAPLAAVEGFVRQILGWREYIRGIYWAHMPGYESRNALEHHLPLP------- 348

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
              +  G T    +  +++Q       H+  R++          ++      +++   +D
Sbjct: 349 -HWFWTGETHMRCLQQSIKQSLQTAHAHHIQRLMVIGNFALLAGLNPMELHRWYLGIYID 407

Query: 383 GD 384
             
Sbjct: 408 AF 409


>gi|153831587|ref|ZP_01984254.1| photolyase [Vibrio harveyi HY01]
 gi|148872097|gb|EDL70914.1| photolyase [Vibrio harveyi HY01]
          Length = 514

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 114/368 (30%), Gaps = 53/368 (14%)

Query: 57  QSHFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +    ++++ Q  K    +G   +        +FDD  + L  Y  +   +K  Y R   
Sbjct: 48  KVCAFFSAMEQFAKERQSEGHQVLHLTLDDTQSFDDLEQVLQQYVSEVGASKFEYQR--- 104

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS--------------------------I 147
            +E R  + L K     V+ +  D    L P                            I
Sbjct: 105 PDEYRLLEQLAKLKLDGVVTRCADSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDI 164

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAI 204
           L    +       +       L   D+  LP P   +  + G V                
Sbjct: 165 LMQDGKPVGGKWNYDANNRNKLKAKDIEQLPQPLMFSTDVRGIVERLAKHDIKTIGNLEG 224

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVE-------QRDIPAIQGTSQLSPYLSIGVLSPR 257
           D ++PI    +L +L  FC+  +  +         Q D       S++S  L+  +L PR
Sbjct: 225 DLLWPINRAQSLSLLAHFCQVCLPLFGRFQDAMTGQHDAKWSLYHSRISFSLNSKLLHPR 284

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEKIE 315
           +  +   + F        S    ++ + L WRE+ R    A  P            +   
Sbjct: 285 EVIDASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKKNELGAERK--- 341

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
                 L   +  G T    +  A+ Q     + H+  R++          +D    +E+
Sbjct: 342 ------LPDFFWNGETKMACMRNAIGQSLDYAYAHHIQRLMVTGNFCLLTEIDPDQVDEW 395

Query: 376 FMSQLLDG 383
           ++   +D 
Sbjct: 396 YLGIYVDA 403


>gi|325528957|gb|EGD05983.1| hypothetical protein B1M_03719 [Burkholderia sp. TJI49]
          Length = 479

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 126/389 (32%), Gaps = 58/389 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYE-INE 116
           I+A++ +  + L   G    Y +  +          LDS         +    +Y   +E
Sbjct: 20  IFAAMRRFARLLRDAGHRVHYIEIDDPLNRQAIPANLDSVAELHGAACI----EYLLPDE 75

Query: 117 VRRDKLLEK-RLQHRVICKSFD-DSVLLPPGSI--LNHALQMYKVYTPFRKALIQNLVQA 172
            R D+ L        V  ++ D          +  +  A + + +   +R   +++ V  
Sbjct: 76  WRVDQQLSAYAAAASVPVRAVDTGHFHTTRDEVAQVLGAGRSWIMDRFYRSMRVRHRVLL 135

Query: 173 DLRSLP----------VPAIRLTGPVTPSNIPRFFDY----------------PFQAIDP 206
           D    P                  P  P++     D+                   A D 
Sbjct: 136 DGEGRPAGGQWNYDAENRQAWSGSPAEPADWRPHHDHRALWQQIVAAGVRSFGEPSAGDF 195

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNR 262
            +P+    AL  L  F ++ + ++ + +D           S LS  L++ +L+PR+   R
Sbjct: 196 RWPVDRAEALACLDAFIRDALPFFGQFQDAMHGSARRLFHSMLSFALNVKMLNPREVVAR 255

Query: 263 LKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDS 320
            +  +      P +    ++ + L WREF R +     P       F        W  D 
Sbjct: 256 AEHAYRS-GAAPLAAVEGFIRQILGWREFVRGVYWARMPGYENSNAFGHRRPLPPWFWD- 313

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
                   G T    +  A+RQ       H+ LR++          +D     E+++   
Sbjct: 314 --------GRTRMACMSHALRQSLEDAHAHHILRLMVIGNFALLAGLDPHEVHEWYLGVY 365

Query: 381 LDGD----LASNNGGWQWAASTGNDSVPY 405
           +D      + +  G  Q+A      + PY
Sbjct: 366 IDAFEWVEMPNTLGMSQYADGGAMATKPY 394


>gi|110668351|ref|YP_658162.1| deoxyribodipyrimidine photolyase-related protein [Haloquadratum
           walsbyi DSM 16790]
 gi|109626098|emb|CAJ52549.1| deoxyribodipyrimidine photolyase-related protein [Haloquadratum
           walsbyi DSM 16790]
          Length = 522

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/406 (14%), Positives = 122/406 (30%), Gaps = 61/406 (15%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHF------IYASLLQVQKSLSQKGIV 78
            L  A   S   +I            H  + R+S+       +++ +   +  L   G  
Sbjct: 34  PLARAPSGSRVLLI----------EAHDFARRKSYHHDKLAIMFSGMRHFRDELEDAGYD 83

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHR---VICKS 135
             Y +   F D+   L  Y  +    +L   R    N   R   L + +  +   V  + 
Sbjct: 84  VVYLKAPTFSDA---LAEYFERYPDDELIQMRSPSYNSAMRFDELVEDVGGQYRSVENEL 140

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------------------------LVQ 171
           F  +         N     ++  T +R    ++                           
Sbjct: 141 FVGTTTAFDEWANNSDTDPFRHETFYRWMRGKSGVLMNDGDPVGGEWNYDDENRDFPPDD 200

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY- 230
            +   +  P        T S +   FD        ++P+  + AL  L  F  E++  + 
Sbjct: 201 WESPPVYDPEHDELTTETMSWVESTFDTWGDTDSLIWPVTREQALEKLHHFISERIPSFG 260

Query: 231 ---VEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI- 286
                 R        + L   +++G+L P +    ++  + +    P +     + +++ 
Sbjct: 261 PYQDAMRREDWAMSHALLGSSINLGLLHPVEVIQEIETAYHNRDDIPLNSVEGVIRQMLG 320

Query: 287 WREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           WREF RH+     P +          +         L  A+  G T    +   +  +  
Sbjct: 321 WREFMRHVYRHTMPELGSANQLDAQHD---------LPSAYWSGETNMACLGETVDDVKQ 371

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
            G+ H+  R++  +        D     E+F +  +D         
Sbjct: 372 RGYSHHIQRLMVLANFATLWGADPSELNEWFNATYVDAYHWVTTPN 417


>gi|302547631|ref|ZP_07299973.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302465249|gb|EFL28342.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC
           53653]
          Length = 502

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 17/208 (8%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           FP   + AL  LR F   ++  +    D       +   SQLS  L++G+L P +C +R 
Sbjct: 221 FPATRREALASLRHFVTHRLPCFGPYEDAMLAADPVMCHSQLSAPLNLGLLHPAECVDRA 280

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIE-WNKDSH 321
           +  + D  + P +GA  ++ ++  WRE+  HL   +     G+  +  T  +  W  D  
Sbjct: 281 ERAWRDGAV-PLAGAEGFVRQIAGWREYVWHLYWHFREDYRGRNALRHTAPLPGWFLDLD 339

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
                         +   + Q+   GW H+  R++           D     ++F    +
Sbjct: 340 ADAVTAH------CLATVLAQVRDTGWTHHIPRLMVLGSRALQDGWDPAAVTDWFHRCFV 393

Query: 382 DGD----LASNNGGWQWAASTGNDSVPY 405
           DG     L +  G  Q+A      + PY
Sbjct: 394 DGYDWVMLPNVVGMSQYADGGLMTTKPY 421


>gi|28870844|ref|NP_793463.1| hypothetical protein PSPTO_3689 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28854093|gb|AAO57158.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 512

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/418 (14%), Positives = 132/418 (31%), Gaps = 59/418 (14%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD---SIEWLDSYCLQQR 102
           E+        ++   I++++    ++L ++G+  QY    +  +       L  +     
Sbjct: 39  EEASHVPHHPQKIALIFSAMRHFAEALRERGVRVQYVTLDDAQNTGSVPGELRRWQALLN 98

Query: 103 VTKLF---------------------YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141
             +L                      +         R +       + ++  + F   + 
Sbjct: 99  AEQLHITECGDWRLEQSIKDGGLPIQWYADTRFLCSRDEFAARAHGKKQLRMEFFYREMR 158

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSNIPRFFDY 199
                +LN           F     + L +      P+   A  +T  V      RF  +
Sbjct: 159 RKSRLLLNGDGTPVGGAWNFDAENRKALPKGVAAPYPMRFSADAITRDVLTLVAERFASH 218

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLS 255
                   +P+ + +A  +   F    +  + + +D  A        +++S  L+IG+L 
Sbjct: 219 YGSLDTFDYPVTQADAQALWEYFLDFGLAGFGDYQDAMATDEPFLFHARISAALNIGLLD 278

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEK 313
            RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F      
Sbjct: 279 LRQICSDVESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNLFG----- 332

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIG 372
                   L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I 
Sbjct: 333 ----NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPEQIC 388

Query: 373 EEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           E Y    +   D     +  G    A      S PY                G +I+ 
Sbjct: 389 EWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 433


>gi|284031886|ref|YP_003381817.1| deoxyribodipyrimidine photolyase-like protein [Kribbella flavida
           DSM 17836]
 gi|283811179|gb|ADB33018.1| deoxyribodipyrimidine photolyase-related protein [Kribbella flavida
           DSM 17836]
          Length = 492

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 78/244 (31%), Gaps = 14/244 (5%)

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS--NIPRFFDYPFQAID--P 206
           A   +      R+A  +                +   V        R  D  F  +D   
Sbjct: 149 AGGRWNFDQDNREAPPRRPTLGTPEPWWPREDEIDAEVRDDLDRWQRSGDVQFVGVDGPR 208

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLSPRQCWNR 262
            F +  Q ALH L  F   ++  +    D           S LS  L++G+L P +   +
Sbjct: 209 RFAVTRQEALHALSDFVAHRLPAFGPHEDAMLAGDDWMAHSLLSATLNLGLLDPMEAVEQ 268

Query: 263 LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            ++ +      P +    ++ +LI WR++  HL   +         +   + +       
Sbjct: 269 AEDAYR-AGAAPLASVEGFVRQLIGWRDYMWHLYWHFGPDYRRSNQLAARQPVP----EW 323

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
             +    G  G   +   +R +   GW+H+  R++                 ++F    +
Sbjct: 324 FTELDADGTVGARCLSEVLRGVREHGWVHHIPRLMVLGNYALQRGWCPDEVTDWFHRSFV 383

Query: 382 DGDL 385
           DG  
Sbjct: 384 DGYD 387


>gi|34498684|ref|NP_902899.1| hypothetical protein CV_3229 [Chromobacterium violaceum ATCC 12472]
 gi|34104536|gb|AAQ60894.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 564

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/388 (16%), Positives = 117/388 (30%), Gaps = 56/388 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQY---HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           I+A++      L  +G   +Y      SN    I  LD+     R   + Y      +E 
Sbjct: 105 IFAAMRDFAAQLKAQGHRVRYVAIDDASNRQSLIGNLDALIAHYRAAAVEYQ---APDEW 161

Query: 118 RRDKLLEKRLQ----------------HRVICKSFDD------------SVLLPPGSILN 149
           R D+ L +                    R    +F               +    G +++
Sbjct: 162 RLDRQLAEWAAGLPIPCRMADSEHFYTARGEAAAFFGARRQWRQETLYRHLRRQHGILMD 221

Query: 150 HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-- 207
              +       F     Q                    +  + +    D   Q       
Sbjct: 222 DNGEPAGGRWNFDADNRQRWPGHPPEPNDARPEHDHSRLWQTIVDAGVDSFGQPQADALR 281

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           +P+    AL  LR F +  + ++   +D  + +      S LS  L++ +L+PR+  +  
Sbjct: 282 WPLNRAEALAQLRAFVEHALPHFGAYQDAMSPRARRLFHSLLSFALNVKMLNPREAVDAA 341

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRH-LMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
              +      P +    +  +L+ WRE+ R    A  P                W  D  
Sbjct: 342 VAAWR-RGDAPLAAVEGFARQLLGWREYVRGVYWAKMPGYRDSNALDHRLPLPRWFWD-- 398

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
                  G TG   +  A+ Q     + H+  R++          +  +   E+++   +
Sbjct: 399 -------GDTGMRCLAHAIGQSLEDAYAHHIQRLMVIGNFGLIAGLSPQALHEWYLGVYI 451

Query: 382 DGD----LASNNGGWQWAASTGNDSVPY 405
           D      L +  G  Q+A      S PY
Sbjct: 452 DAFEWVELPNTLGMSQFADGGLLGSKPY 479


>gi|195976053|gb|ACG63558.1| DNA photolyase II [Pseudoplusia includens nucleopolyhedrovirus]
          Length = 241

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 13/158 (8%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            G  NA+  L  F   K+Y Y   R+ P     S LSP+   G +S ++    L     +
Sbjct: 85  AGYINAVDTLADFIDTKLYKYKNLRNNPNENVQSNLSPWFHFGQISVQRVVLYLLSLDDN 144

Query: 270 LLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWT---------EKIEWNKDS 320
             IK     +     ++ RE   +   + P+         W          +K  +   S
Sbjct: 145 KAIKSHIETYVEEC-VVRRELADNYCFYNPNYDNLAGAPEWAIATLKKHAGDKRSYCYTS 203

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
             L+      T   + +AA  +L   G +H  +RM  A
Sbjct: 204 DQLEYSA---THNDLWNAAQTELRAKGKIHGFMRMYWA 238


>gi|302847739|ref|XP_002955403.1| hypothetical protein VOLCADRAFT_119073 [Volvox carteri f.
           nagariensis]
 gi|300259245|gb|EFJ43474.1| hypothetical protein VOLCADRAFT_119073 [Volvox carteri f.
           nagariensis]
          Length = 128

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISA 55
            S+ L WLR DLR  DN+AL  AC  +DA V+ VF   P   +    + 
Sbjct: 68  KSLGLWWLRRDLRTADNEALTGACRQADA-VLPVFCFDPRAVQPRREAP 115


>gi|330889948|gb|EGH22609.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 469

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 64/418 (15%), Positives = 134/418 (32%), Gaps = 71/418 (16%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFY 108
               ++   I++++    ++L ++G+  QY    +          L  +    +  +L  
Sbjct: 2   PHHPQKIVLIFSAMRHFAEALRERGVRVQYVTLDDPQNTGSVPGELRRWQALLQADELHV 61

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS---------------------- 146
               +    RR++ ++      +  + + D+  L                          
Sbjct: 62  TECGDW---RREQSIK---DSGLPIQWYADTRFLCSREEFLSWAQGKKQLRMEFFYREMR 115

Query: 147 -----ILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSNIPRFFDY 199
                +LN           F     + L +      P+   A  +T  V      RF  +
Sbjct: 116 RKSRLLLNGDGTPVGGAWNFDAENRKALPKGVAAPYPMRFSADGITRDVLTLVAERFASH 175

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLS 255
                D  +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L 
Sbjct: 176 YGSLDDFDYPVTHVDAQALWDYFLDFGLAGFGDYQDAMATDEPFLFHARISAALNIGLLD 235

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEK 313
            RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F      
Sbjct: 236 LRQICSDVESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPEYADGNLFG----- 289

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIG 372
                   L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I 
Sbjct: 290 ----NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPSQIC 345

Query: 373 EEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           E Y    +   D     +  G    A      S PY                G +I+ 
Sbjct: 346 EWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 390


>gi|296105764|ref|YP_003617464.1| hypothetical protein lpa_00381 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295647665|gb|ADG23512.1| Hypothetical protein lpa_00381 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 512

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 60/419 (14%), Positives = 135/419 (32%), Gaps = 52/419 (12%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY---HQ 83
            AA +     V    +A    +  H    ++  F+++++    + L +KG   +Y     
Sbjct: 19  LAAINKQKDIVFLCEVAEETSYVPHH--PKKIAFLFSAMRHFAQQLKKKGYRVRYTAFDD 76

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP 143
             N     + L     +++V+ +      E   ++    L+ +L   V     D+  L  
Sbjct: 77  PRNQGSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQLTIPVTLHE-DNRFLCK 135

Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQ------------------------ADLRSLPV 179
                N A +  ++   F   +++                              + S P 
Sbjct: 136 INEFRNWAKEKKQLRMEFFYRMMRQKYHLLVDNDGKPVGGSWNYDAQNRKNANRISSFPK 195

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRD 235
                   +T   +     +  +     +P    +  + AL     F +  +  +   +D
Sbjct: 196 RLEHARDVITDEVLGLVSAHFAKHFGQCYPFNLAVTREQALEEADYFMEHFLCNFGAYQD 255

Query: 236 IPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREF 290
                      S+LS YL+ G+L P +     ++ +    + P +    ++ + L WRE+
Sbjct: 256 AMLKDEISLYHSKLSSYLNAGLLLPLELCQMAEQAYFSKQM-PLNSVEGFIRQILGWREY 314

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R +   +        +      +            ++  TG   I   +RQ +   + H
Sbjct: 315 VRGIYWLFMPDYGEMNYFNACRPLP------SFFWGEE--TGMFCIKEVVRQTSNEAYSH 366

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
           +  R++          +D +   E++++   D      L +  G   +A      S PY
Sbjct: 367 HIQRLMITGNFALLAGLDPKQVCEWYLAVYADAYEWVELPNTLGMALYADGGLMASKPY 425


>gi|148358415|ref|YP_001249622.1| hypothetical protein LPC_0281 [Legionella pneumophila str. Corby]
 gi|148280188|gb|ABQ54276.1| hypothetical protein LPC_0281 [Legionella pneumophila str. Corby]
          Length = 500

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 60/419 (14%), Positives = 135/419 (32%), Gaps = 52/419 (12%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY---HQ 83
            AA +     V    +A    +  H    ++  F+++++    + L +KG   +Y     
Sbjct: 19  LAAINKQKDIVFLCEVAEETSYVPHH--PKKIAFLFSAMRHFAQQLKKKGYRVRYTAFDD 76

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP 143
             N     + L     +++V+ +      E   ++    L+ +L   V     D+  L  
Sbjct: 77  PRNQGSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQLTIPVTLHE-DNRFLCK 135

Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQ------------------------ADLRSLPV 179
                N A +  ++   F   +++                              + S P 
Sbjct: 136 INEFRNWAKEKKQLRMEFFYRMMRQKYHLLVDNDGKPVGGSWNYDAQNRKNANRISSFPK 195

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFP----IGEQNALHILRKFCKEKVYYYVEQRD 235
                   +T   +     +  +     +P    +  + AL     F +  +  +   +D
Sbjct: 196 RLEHARDVITDEVLGLVSAHFAKHFGQCYPFNLAVTREQALEEADYFMEHFLCNFGAYQD 255

Query: 236 IPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREF 290
                      S+LS YL+ G+L P +     ++ +    + P +    ++ + L WRE+
Sbjct: 256 AMLKDEISLYHSKLSSYLNAGLLLPLELCQMAEQAYFSKQM-PLNSVEGFIRQILGWREY 314

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R +   +        +      +            ++  TG   I   +RQ +   + H
Sbjct: 315 VRGIYWLFMPDYGEMNYFNACRPLP------SFFWGEE--TGMFCIKEVVRQTSNEAYSH 366

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
           +  R++          +D +   E++++   D      L +  G   +A      S PY
Sbjct: 367 HIQRLMITGNFALLAGLDPKQVCEWYLAVYADAYEWVELPNTLGMALYADGGLMASKPY 425


>gi|331015957|gb|EGH96013.1| hypothetical protein PLA106_08155 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 475

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 61/409 (14%), Positives = 129/409 (31%), Gaps = 59/409 (14%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD---SIEWLDSYCLQQRVTKLF---- 107
            ++   I++++    ++L ++G+  QY    +  +       L  +       +L     
Sbjct: 11  PQKIALIFSAMRHFAEALRERGVRVQYVTLDDAQNTGSVPGELRRWQALLNAEQLHITEC 70

Query: 108 -----------------YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNH 150
                            +         R +       + ++  + F   +      +LN 
Sbjct: 71  GDWRLEQSIKDGGLPIQWYADTRFLCSRDEFAAWAHGKKQLRMEFFYREMRRKSRLLLNG 130

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
                     F     + L +      P+   A  +T  V      RF  +        +
Sbjct: 131 DGTPVGGAWNFDAENRKALPKGVAAPYPMRFSADAITRDVLTLVAERFASHYGSLDTFDY 190

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLK 264
           P+   +A  +   F    +  + + +D  A        +++S  L+IG+L  RQ  + ++
Sbjct: 191 PVTRADAQALWEYFLDFGLAGFGDYQDAMATDEPFLFHARISAALNIGLLDLRQICSDVE 250

Query: 265 EEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHL 322
             +    +   + A  ++ +LI WRE+ R +     P    G  F              L
Sbjct: 251 SAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNLFG---------NSRPL 300

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIGEEYFMSQLL 381
            + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I E Y    + 
Sbjct: 301 PEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPEQICEWYLAIYMD 360

Query: 382 DGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
             D     +  G    A      S PY                G +I+ 
Sbjct: 361 AFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 396


>gi|237803554|ref|ZP_04591139.1| hypothetical protein POR16_27981 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331025536|gb|EGI05592.1| hypothetical protein POR16_27981 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 512

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 136/418 (32%), Gaps = 59/418 (14%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD---SIEWLDSYCLQQR 102
           E+        ++   I++++    ++L ++G+  QY    + ++       L  +     
Sbjct: 39  EEASHVPHHPQKIALIFSAMRHFAEALRERGVREQYVTLDDPENSGSIPGELCRWQALLE 98

Query: 103 VTKLF---------------------YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141
             +L                      ++        R +     + + ++  + F   + 
Sbjct: 99  AQELHVTECGDWRLEQSIKDCGLPIRWHADTRFLCSRDEFSAWAQGKKQLRMEFFYREMR 158

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSNIPRFFDY 199
              G +LN           F     + L +      P+   A  +T  V      RF ++
Sbjct: 159 RKSGLLLNGDGTPVGGAWNFDAENRKALPKGVAAPYPMRFSADAITRDVLALVAERFANH 218

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLS 255
                   +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L 
Sbjct: 219 YGSLEAFDYPVTHADAQALWEYFLDFGLAGFGDYQDAMATDEPFLFHARISAALNIGLLD 278

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEK 313
            RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F      
Sbjct: 279 LRQICSDVESAYWSGKV-ALNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNLFG----- 332

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIG 372
                   L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I 
Sbjct: 333 ----NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPEQIC 388

Query: 373 EEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           E Y    +   D     +  G    A      S PY                G +I+ 
Sbjct: 389 EWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 433


>gi|317969878|ref|ZP_07971268.1| deoxyribodipyrimidine photolyase-like protein protein
           [Synechococcus sp. CB0205]
          Length = 507

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 67/445 (15%), Positives = 143/445 (32%), Gaps = 69/445 (15%)

Query: 22  DNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81
           D  AL +A          + + +     Q     ++   +++++      L  +G    Y
Sbjct: 15  DQSALASA---RPEDCRVLLLESSSVLEQRAYHGQKVVLVWSAMRHFAADLRDQGWTVDY 71

Query: 82  HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR--------LQHRVIC 133
            Q   F      L ++  +Q + +L   R  E  +    + +E+         +Q     
Sbjct: 72  IQTETFS---SALLAWIQEQGIQEL---RLMEPVDRGFRRSIERLSLPIPIHLMQSNAFL 125

Query: 134 KSFDDSVLLPPGSILNHALQMYKVYTPFRKALI------------QNLVQADLRSLPVPA 181
            S +D       +     L+M   Y   RK               Q     + R  P   
Sbjct: 126 WSRED---FAAWAGRYKQLRMELFYREGRKRFGVLMETADSPLGGQWNYDQENRKPPTKG 182

Query: 182 IRLTGPVT-------------PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
           +    P+                 + +    P +     + +    AL +L  F + ++ 
Sbjct: 183 LSGPAPLWFEPDAVTRAVIEKIEGLQQRHGLPGETQPFRWAVNRDQALQVLDHFTQTRLS 242

Query: 229 YYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            +   +D           + LSPYL++G+L P +   RL+ E ++  + P +G    + +
Sbjct: 243 GFGPFQDAMVSGEPTLWHALLSPYLNLGLLHPLEVIQRLEREGLERQV-PLAGLEGVIRQ 301

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW--KQGYTGFPIIDAAMRQ 342
           ++    Y H +  +        F     ++     S  L  W  + G +G   +D    +
Sbjct: 302 ILGWREYTHGLYHW--------FGEQYAEVNHFGASEPLPQWFEQLGGSGMRCLDTVFAE 353

Query: 343 LNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           + + G+ H+  R++  +       +D +    +F    +DG    +          G  +
Sbjct: 354 IESSGYAHHIQRLMLLANYGLLAGLDPQALTAWFHRMFIDGF---DWVMLTNVLGMGVFA 410

Query: 403 VPYFRIFNPTIQGKRFDPQGTFIRH 427
                   P          G +I+ 
Sbjct: 411 DGGRLASKPYAAS------GNYIKR 429


>gi|94497196|ref|ZP_01303768.1| hypothetical protein SKA58_13378 [Sphingomonas sp. SKA58]
 gi|94423301|gb|EAT08330.1| hypothetical protein SKA58_13378 [Sphingomonas sp. SKA58]
          Length = 511

 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/397 (13%), Positives = 119/397 (29%), Gaps = 49/397 (12%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG-------- 76
           A   A H  D+ V+ + +A    + +H  +  +  FI +++    + L   G        
Sbjct: 20  AALRAAHKDDSIVLMMEVADETAYVKHHKA--KIAFILSAMRHHAERLRALGWTVDYVTL 77

Query: 77  --------------------IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
                                    H     +  +  +      +    +  +       
Sbjct: 78  DAPDNRGSFTSEVARAVERHQPRAIHVTEAGEWRVRSMIESWETRFAIPVTIHEDDRFLC 137

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
              +       ++++  + F   +    G ++  A +       +     +     DL  
Sbjct: 138 SHAEFDSWAAARNQLRMEFFYRDMRRKTGLLMTDAGEPEGGQWNYDADNRKPAPDRDLLM 197

Query: 177 LPVPAIRLTG---PVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
                 R  G    V      RF D+        F +    AL   ++F  + +  + + 
Sbjct: 198 PHPIRFRPDGVTQAVLDMVADRFADHIGSLDYFHFAVTHDEALRQRKRFLDDALPRFGDY 257

Query: 234 RDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WR 288
           +D           S LSPY++ G+L P      ++  +    + P + A  ++ ++I WR
Sbjct: 258 QDAMLTDEPFLWHSILSPYINAGLLDPLDLCREVEARYRAGKV-PLNCAEGFIRQIIGWR 316

Query: 289 EFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           E+ R +     P            +         L   +  G T    +  A+ Q    G
Sbjct: 317 EYVRGVYWHEGPDYGKRNALEAQRD---------LPDFYWTGETDMHCLAQAIGQTIDHG 367

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           + H+  R++          +D      +++    D  
Sbjct: 368 YAHHIQRLMITGNFALIAGIDPHQVHVWYLEVYADAY 404


>gi|293652307|gb|ADE60792.1| CPD photolyase [Spodoptera exigua]
          Length = 162

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 17/148 (11%)

Query: 154 MYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213
              +  P+        +  D   +   A +  GPV  +                   G  
Sbjct: 32  PPIIKHPYTAKFEPESIDWDEAIVSREADKNVGPVDWA-----------------RPGYD 74

Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
           NAL +L+ F  +++  +  +R+ P     S LSP+   G +S ++    ++E        
Sbjct: 75  NALKMLKSFLDQRLKVFATKRNDPTKDALSNLSPWFHFGQISVQRVALCVQEHKGKHTES 134

Query: 274 PKSGAFSWLNELIWREFYRHLMAFYPSV 301
             +     +      + +      Y S+
Sbjct: 135 VNAFLEEAIVRRELADNFCFYCEHYDSI 162


>gi|213968871|ref|ZP_03397012.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301384082|ref|ZP_07232500.1| hypothetical protein PsyrptM_15665 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059840|ref|ZP_07251381.1| hypothetical protein PsyrptK_07610 [Pseudomonas syringae pv. tomato
           K40]
 gi|213926474|gb|EEB60028.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 512

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 62/418 (14%), Positives = 133/418 (31%), Gaps = 59/418 (14%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD---SIEWLDSYCLQQR 102
           E+        ++   I++++    ++L ++G+  QY    + ++       L  +     
Sbjct: 39  EEASHVPHHPQKIALIFSAMRHFAEALRERGVRVQYVTLDDPENTGSVPGELRRWQALLN 98

Query: 103 VTKLF---------------------YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141
             +L                      +         R +       + ++  + F   + 
Sbjct: 99  AEQLHITECGDWRLEQSIKDGGLSIQWYADTRFLCSREEFAAWAHGKKQLRMEFFYREMR 158

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSNIPRFFDY 199
                +LN           F     + L +      P+   A  +T  V      RF  +
Sbjct: 159 RKSRLLLNGDGTPVGGAWNFDAENRKALPKGVAAPYPMRFSADAITRDVLTLVAERFASH 218

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLS 255
                   +P+ + +A  +   F    +  + + +D  A        +++S  L+IG+L 
Sbjct: 219 YGSLDTFDYPVTQADAQALWEYFLDFGLAGFGDYQDAMATDEPFLFHARISAALNIGLLD 278

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEK 313
            RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F      
Sbjct: 279 LRQICSDVESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNLFG----- 332

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIG 372
                   L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I 
Sbjct: 333 ----NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPEQIC 388

Query: 373 EEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           E Y    +   D     +  G    A      S PY                G +I+ 
Sbjct: 389 EWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 433


>gi|156977900|ref|YP_001448806.1| hypothetical protein VIBHAR_06692 [Vibrio harveyi ATCC BAA-1116]
 gi|156529494|gb|ABU74579.1| hypothetical protein VIBHAR_06692 [Vibrio harveyi ATCC BAA-1116]
          Length = 514

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 114/367 (31%), Gaps = 59/367 (16%)

Query: 61  IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            ++++ Q  K    +G   +        +FDD  + L  Y  +   +K  Y R    +E 
Sbjct: 52  FFSAMEQFAKERQSEGHQVLHLTLDDTQSFDDLEQVLQHYVSEVGASKFEYQR---PDEY 108

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGS--------------------------ILNHA 151
           R  + L K     V+ +  D    L P                            IL   
Sbjct: 109 RLLEQLAKLKLDGVVARCVDSEHFLLPFEEIESQFPQGKHIMMEHFYRRMRKRFDILMQD 168

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY---PFQAIDPMF 208
            +       +       L   D+  LP P +  T     +      D         D ++
Sbjct: 169 GKPVGGKWNYDANNRNKLKVKDIEQLPQPLMFSTDVRDITERLARHDIKTIGNLEGDLLW 228

Query: 209 PIGEQNALHILRKFCKEKVYYYVE-------QRDIPAIQGTSQLSPYLSIGVLSPRQCWN 261
           PI    +L +L  FC+  +  +         Q D       S++S  L+  +L PR+  +
Sbjct: 229 PINRAQSLSLLAHFCQVCLPLFGRFQDAMTGQHDAKWSLYHSRISFSLNSKLLHPREVID 288

Query: 262 RLKEEFVDLLIKPKSGAFSWLNE-LIWREF----YRHLMAFYPSVCMGKPFIPWTEKIEW 316
              + F        S    ++ + L WRE+    Y   M  YP            +   W
Sbjct: 289 ASLKAFHSNADIDISQVEGFIRQILGWREYIRGVYWANMPHYPKKNKLGAERKLPDFF-W 347

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
           N           G T    +  A+ Q     + H+  R++          +D    +E++
Sbjct: 348 N-----------GETKMACMRNAIGQSLDYAYAHHIQRLMVTGNFCLLTEIDPDQVDEWY 396

Query: 377 MSQLLDG 383
           +   +D 
Sbjct: 397 LGIYVDA 403


>gi|258652969|ref|YP_003202125.1| deoxyribodipyrimidine photolyase-like protein [Nakamurella
           multipartita DSM 44233]
 gi|258556194|gb|ACV79136.1| deoxyribodipyrimidine photolyase-related protein [Nakamurella
           multipartita DSM 44233]
          Length = 500

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 11/182 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           F      AL  L  F   ++  +    D      A    S LS  L++G+L P +  +R+
Sbjct: 219 FAATRHEALQALEHFVAHRLAAFGRYEDAMLADDAWMAHSLLSAPLNLGLLDPLEVVHRV 278

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHL 322
           ++ +        +        L WR++  HL  +  P    G          +W  +   
Sbjct: 279 EDAYRGGQAPIAAAEAVVRQILGWRDYVWHLYWYLGPDYPAGNGLRARRGLPDWFAELDA 338

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
                +  +G       +  L   GW+H+  R++           D     ++F    +D
Sbjct: 339 DAVQARCLSGV------LADLRDHGWVHHIPRLMVLGNFALQQGWDPAELTDWFHRCFVD 392

Query: 383 GD 384
           G 
Sbjct: 393 GY 394


>gi|311900784|dbj|BAJ33192.1| hypothetical protein KSE_74370 [Kitasatospora setae KM-6054]
          Length = 504

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 87/279 (31%), Gaps = 18/279 (6%)

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPR 195
            +LL PG                     + ++       P       R+   +       
Sbjct: 151 HLLLDPGGQPVGGRWNLDADNREPPPRGEGVLPVPPPRWPEEDEIDERVRADLDRWERSG 210

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI----PAIQGTSQLSPYLSI 251
              +  +     F      AL  L  F   ++ ++    D           S LS  L++
Sbjct: 211 EVRFVGRDGPRRFAATRAEALRALEHFVTARLPHFGRWEDAVLAADPWMAHSLLSVPLNL 270

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPW 310
           G+L P +C  R ++ +      P +    ++ ++  WRE+   L  +       +  +  
Sbjct: 271 GLLDPGECARRAEDAYRS-GSAPLNSVEGFVRQVAGWREYVWQLYWYLGEEHRHRNALGH 329

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
              +  +  + L     +       +  A+ Q+   GW+H+  R++           D  
Sbjct: 330 HAPLP-DWFAELDADAVRAR----CLSGALAQVRDTGWVHHIPRLMVLGNWALQHGYDPA 384

Query: 371 IGEEYFMSQLLDGDL----ASNNGGWQWAASTGNDSVPY 405
              ++F    +DG       +  G  Q+A      + PY
Sbjct: 385 AVTDWFHRCFVDGYDWVMVPNVVGMSQYADGGTVTTKPY 423


>gi|298208128|ref|YP_003716307.1| deoxyribodipyrimidine photolyase related protein [Croceibacter
           atlanticus HTCC2559]
 gi|83848049|gb|EAP85919.1| deoxyribodipyrimidine photolyase related protein [Croceibacter
           atlanticus HTCC2559]
          Length = 511

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 62/383 (16%), Positives = 122/383 (31%), Gaps = 54/383 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRR 119
            + S+      L  KG    Y+   +   + + L     Q    + F N +Y   +E R 
Sbjct: 50  FFLSMQAFSNFLKSKGHNVIYYTLDD-PKNTQCLTENLQQLINKEEFENLEYLLPDEYRL 108

Query: 120 DKLLEKRLQHRVICKSFDDSVLLP----------------------PGSILNHALQMYKV 157
           DK L+   +   I  +  D+                                H++ M   
Sbjct: 109 DKQLKTFCESLSIQWAVKDTEHFYTTRNELQSFYKGKKQIVMEYFYRDMRKKHSILMQDS 168

Query: 158 YTPFRKAL-IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY----PFQAIDPM---FP 209
             P   +       +   +  P      T     S +    D      F AID     +P
Sbjct: 169 KNPEGGSWNFDKKNRKAWKGSPAIPKAKTFSKDASALINLLDSFNIDYFGAIDSKSFNWP 228

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKE 265
              Q +L +L  FC+  + ++ + +D           S+LS  L+  +LSP++  N + +
Sbjct: 229 TNRQESLKVLEYFCENLLIHFGDYQDAMHPNEFYLFHSRLSFALNTKMLSPKEVINTVLD 288

Query: 266 EFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
            + +   +   S    ++ + L WREF R +          K  +  T  +         
Sbjct: 289 YYYEHKEQIDISQVEGFVRQILGWREFMRGMYWKEMPGYENKNSLENTNALP-------- 340

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           + +  G T    +  +++Q     + H+  R++                + +++   +D 
Sbjct: 341 EFYWTGNTKMSCLKHSIKQSLDHAYAHHIQRLMITGNYALLTQTHPDDVDNWYLGVYIDA 400

Query: 384 DLASNNGGWQWAASTGNDSVPYF 406
                    QW   T    +  F
Sbjct: 401 --------IQWVEITNTRGMSQF 415


>gi|148242302|ref|YP_001227459.1| deoxyribodipyrimidine photolyase-like protein protein
           [Synechococcus sp. RCC307]
 gi|147850612|emb|CAK28106.1| Deoxyribodipyrimidine photolyase-related protein [Synechococcus sp.
           RCC307]
          Length = 508

 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 88/272 (32%), Gaps = 14/272 (5%)

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPI 210
               +      RK   + L   +       AI        + +   ++ P  +    + +
Sbjct: 167 QGGQWNFDQDNRKPPPKGLEGPEPLWFEPDAITSAVISKLNRLAERYELPGTSDPFRWGV 226

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEE 266
            +Q A  +L  F   ++  +   +D           + +SPY+++G+L P     +L+  
Sbjct: 227 SQQQAQEVLEHFIATRLEGFGPYQDAMVSGQPTLWHALISPYINLGLLQPLAVIRQLEHA 286

Query: 267 FVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAW 326
             +  I   S        L WREF   L   +         +   E +            
Sbjct: 287 GREREIPLASLEGVIRQLLGWREFTHGLYHHFGEDYSHSNALEALEPLP-------EFLH 339

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLA 386
           + G +G   +D  + +LN  G+ H+  R++  + L      + +    +F +Q +D    
Sbjct: 340 QLGGSGMGCVDTVLGELNERGYAHHIQRLMVLTNLGLMAGWNPQDLTSWFQAQFVDAH-- 397

Query: 387 SNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
            +          G  +        P     R+
Sbjct: 398 -HWVMQTNVLGMGLWADGGRLGSKPYAASGRY 428


>gi|300313020|ref|YP_003777112.1| deoxyribodipyrimidine photolyase [Herbaspirillum seropedicae SmR1]
 gi|300075805|gb|ADJ65204.1| deoxyribodipyrimidine photolyase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 519

 Score = 60.4 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 57/393 (14%), Positives = 126/393 (32%), Gaps = 54/393 (13%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQ 111
           A++   ++A++      L   G   +Y +  +       ++ L +     + +++ +   
Sbjct: 54  AQKVLALFAAMRDFAARLKAGGHRVRYIRLDDPSNRQSLVDNLSALARHYQASQVQWQ-- 111

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSILN-----HALQMYKVYTPFRKA 164
              +E R D+ L +  Q + +  S  D    L     +           M   Y   R+ 
Sbjct: 112 -APDEWRVDEALRQWAQAQPLQTSMADSEHFLTDRHELPRLFSGRKQWLMEHFYRQMRRR 170

Query: 165 LI-------------QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY----------PF 201
                           N    + +  P           P +    ++             
Sbjct: 171 FELLLEADGSPTGGQWNFDHDNRKRWPGTPAEPADWRQPHDHSALWEMLQACAVPTFGDP 230

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPR 257
           QA    +P+  + AL  L  F    +  + +  D  + +      S LS  L++ +L P 
Sbjct: 231 QASQLRWPLNREEALAHLEHFITHALPCFGDFEDAMSSRAQRLFHSLLSFALNVKMLHPL 290

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316
           +   R +E + +    P +    ++ ++I WRE+ R +          +  +     +  
Sbjct: 291 EVVRRAEEAYREGQA-PLAAVEGFVRQIIGWREYVRGIYWSQMPGYEDRNVLDHGLPLP- 348

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
                    +  G T    +  A+ Q       H+  R++          +D +   +++
Sbjct: 349 -------AWFWTGQTRMRCLQQAIGQSLQSAHAHHIQRLMVIGNFALLAGLDPKALHQWY 401

Query: 377 MSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
           +   +D      L +  G  QWA      + PY
Sbjct: 402 LGVYIDAFEWVELPNTLGMSQWADGGIIATKPY 434


>gi|298162586|gb|ADI59660.1| cryptochrome [Paralichthys olivaceus]
          Length = 96

 Score = 60.4 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVK-DLLV 367
           P    I W+++   L  W +G   FP I A M QL   G + +  R   A FL +  L +
Sbjct: 17  PICVMIPWDRNPKALAKWAEGRRSFPWIHAIMTQLTLDGRIDHLARHAVACFLTRGHLRI 76

Query: 368 DWRIGEEYFMSQLLDGDL 385
            W+ G + F   LLD D 
Sbjct: 77  TWKEGLKVFEELLLDADW 94


>gi|126730231|ref|ZP_01746043.1| deoxyribodipyrimidine photolyase-related protein [Sagittula
           stellata E-37]
 gi|126709611|gb|EBA08665.1| deoxyribodipyrimidine photolyase-related protein [Sagittula
           stellata E-37]
          Length = 500

 Score = 60.4 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 117/390 (30%), Gaps = 45/390 (11%)

Query: 28  AACHNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86
           AA   +D     V +A   +   + G   ++   I+A++ +    L   G    Y +  +
Sbjct: 17  AALRRADKAKDVVVMAEVAEETAYVGHHPKKIALIFAAMRKFAVRLRDDGWDVAYSELDD 76

Query: 87  FDD---SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK------RLQHRVICKSFD 137
            D+       L     Q    ++      E  E R    L+       +L+      S  
Sbjct: 77  TDNTGSIPGELLRRADQYGAQEVLA---TEPGEWRLIAALDDTPLKVTQLEDDRFVASHK 133

Query: 138 DSVLLPPG-----------SILNHALQMYKVYTPFRKALIQNLV-------QADLRSLPV 179
           D      G            +      M     P       +         + D   +  
Sbjct: 134 DFEDWARGRKALRMEYFYRDMRRKTGLMMDGGVPAGDKWNYDHDNRKPATDEVDTAPMQF 193

Query: 180 PAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI 239
                   V      RF D         F      A   L  F K  +  + + +D    
Sbjct: 194 TPDDTVEEVLDLVEARFSDNFGTLRPFTFATDTGQARRALAHFVKHALPKFGDYQDAMME 253

Query: 240 Q----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHL 294
                  + LS Y++IG+L P +   +  EE       P + A  ++ +++ WRE+ R +
Sbjct: 254 GERYLWHAHLSAYINIGLLDPLEV-CKAAEEAWQAGDVPINAAEGFIRQIVGWREYVRGI 312

Query: 295 MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
                     +  +     + W      L     G T    +  A+RQ     + H+  R
Sbjct: 313 YFHEGPDYTARNGLGHKRDLPW------LYWG--GETNMRCVAEAVRQTKEDAYAHHIQR 364

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           ++          +D     E+++S  +D  
Sbjct: 365 LMVTGSFALLAGIDPHQVHEWYLSVYIDAF 394


>gi|77459034|ref|YP_348540.1| deoxyribodipyrimidine photolyase-like protein [Pseudomonas
           fluorescens Pf0-1]
 gi|77383037|gb|ABA74550.1| putative deoxyribodipyrimidine photolyase-related protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 512

 Score = 60.4 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 61/416 (14%), Positives = 133/416 (31%), Gaps = 48/416 (11%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86
             A       V+ V +        H    ++   I++++    ++L  +G   +Y    +
Sbjct: 22  LHALDAERDTVLLVEVMEEASHVPHH--PQKIALIFSAMRHFAQALRDQGTRVEYVTLDD 79

Query: 87  FDDS---IEWLDSYCLQQRVTKLF---------------------YNRQYEINEVRRDKL 122
            D+S      L  +    +  ++                      ++        R +  
Sbjct: 80  PDNSGSVPGELKRWQALLQAEQVHITECGDWRLEHSIKECGLPIHWHADTRFLCSREEFA 139

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
                + ++  + F   +      +LN           F     + L +      PV   
Sbjct: 140 AWAEGKKQLRMEFFYREMRRKSRLLLNGDGSPVGGAWNFDAENRKALPKGVKAPYPVRFK 199

Query: 183 R--LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ 240
              +T  V      RF  +     D  +P+   +A  +   F    +  + + +D  A +
Sbjct: 200 NDAITRDVLALVKARFSQHYGALDDFNYPVTHADAQALWAYFLDYGLAGFGDYQDAMASE 259

Query: 241 ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLM 295
                 +++S  L+IG+L  RQ  + ++  +    +   + A  ++ +LI WRE+ R + 
Sbjct: 260 EPFLFHARISAALNIGLLDLRQLCSDVESAYWAGSV-ALNAAEGFIRQLIGWREYVRGVY 318

Query: 296 A-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P   +G  F              L + +  G T    +  A+ Q     + H+  R
Sbjct: 319 WLKMPDYALGNSFG---------NSRPLPEFYWTGDTQMNCMRHAIGQSLQHAYAHHIQR 369

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPYF 406
           ++          +      E++++  +D      L +  G    A      S PY 
Sbjct: 370 LMVTGNFALLAGIAPSQICEWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC 425


>gi|332141441|ref|YP_004427179.1| deoxyribodipyrimidine photolyase-related protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551463|gb|AEA98181.1| deoxyribodipyrimidine photolyase-related protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 512

 Score = 60.4 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 83/221 (37%), Gaps = 20/221 (9%)

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLS 250
            F ++     +  F +  ++AL +L  F +E++  + + +D           S ++ YL+
Sbjct: 214 EFSEHFGDIDNFHFAVTRKDALSVLNTFIEERLPNFGQYQDAMVEGKPWLYHSHIAFYLN 273

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY-PSVCMGKPFI 308
            G+L+P++     ++ +    + P + A  ++ + L WRE+ R     + P++     F 
Sbjct: 274 CGLLTPKEAIQAAEQAYHAGQV-PLNSAEGFIRQILGWREYVRGFYWHFMPNLKTDNYF- 331

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                   +    L   +    T    +   +++     + H+  R++          + 
Sbjct: 332 --------DNSRALPSFFWDAQTNMNCMRQCIKETQQNAYAHHIQRLMVIGNFSLLTELS 383

Query: 369 WRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
               + +++    D      L +  G   ++      S PY
Sbjct: 384 PEEVQAWYLLVYADAYEWVELPNVAGMILYSDGGNLASKPY 424


>gi|330447967|ref|ZP_08311615.1| deoxyribodipyrimidine photolyase-related family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492158|dbj|GAA06112.1| deoxyribodipyrimidine photolyase-related family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 517

 Score = 60.4 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 117/365 (32%), Gaps = 54/365 (14%)

Query: 61  IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            +A++    K+L Q G   +        ++ D ++ + S C Q +     Y +    +E 
Sbjct: 54  FFAAMENFAKALQQAGHEVLHLTLDDTESYTDLLQLIASLCQQYQCQVFEYQQ---PDEY 110

Query: 118 RRDKLLEKRLQHRVICKSFD-DSVLLPPGS-------------------------ILNHA 151
           R  + L       V  ++ D D  LLP                            +L   
Sbjct: 111 RLSEQLSSLTLDGVTVQTTDTDHFLLPLTEIDQYLTAGKHNRMEHFYRAMRKRFNVLMCE 170

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            +       F +A    L   D+ ++P P      ++               F     ++
Sbjct: 171 GKPEGGKWNFDQANRNKLKPTDIAAIPQPLMFTNDVSDITERLARHSISTIGFSQQYLLW 230

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS-------QLSPYLSIGVLSPRQCWN 261
           P+  + +  +L  FC+  + ++   +D     G S       +LS  L+  +L P Q   
Sbjct: 231 PVSRKQSQALLEHFCRYLLPHFGRFQDAMTTHGDSAWSLYHARLSFALNAKMLHPMQVIQ 290

Query: 262 RLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNK 318
                +     +   +    ++ + L WREF R +     P                 + 
Sbjct: 291 AAINAYQQPNSEINIAQVEGFVRQILGWREFIRAVYWLNMPHYGENNTL---------SA 341

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           +  L   +  G T    +  A++Q     + H+  R++          +     E++++ 
Sbjct: 342 NRALPAFFWHGKTQMQCMSHAIKQSLEYSYAHHIQRLMVTGNFCLLTGIAPSEVEQWYLG 401

Query: 379 QLLDG 383
             +D 
Sbjct: 402 IYIDA 406


>gi|332707770|ref|ZP_08427797.1| Deoxyribodipyrimidine photolyase [Lyngbya majuscula 3L]
 gi|332353473|gb|EGJ32986.1| Deoxyribodipyrimidine photolyase [Lyngbya majuscula 3L]
          Length = 67

 Score = 60.4 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 2  KATTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQ 50
           AT    + L+W RNDLRI D++ LY A     A++I ++     Q+  
Sbjct: 18 SATVNQKLILIWYRNDLRIHDHEPLYQAVQE-KAQIIPLYCFDDRQFGT 65


>gi|229528329|ref|ZP_04417720.1| hypothetical protein VCG_001410 [Vibrio cholerae 12129(1)]
 gi|229334691|gb|EEO00177.1| hypothetical protein VCG_001410 [Vibrio cholerae 12129(1)]
          Length = 516

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 20/251 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPF 201
           G ++    +       F       L   DL  LP P      +          R      
Sbjct: 163 GYLMTADGKPEGGQWNFDADNRNKLKAPDLLQLPTPLCFDNPVASIKARLERHRIPSIGQ 222

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVL 254
                ++PI    AL +L  FC+  +  +   +D    Q         S+LS  L+  +L
Sbjct: 223 VGESLLWPINRAQALSLLAYFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLL 282

Query: 255 SPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           SPR+        +     +   +    ++ + L WRE+ R +          +  +    
Sbjct: 283 SPREVIEATISAYRAAQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQR 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           +  G T    +  A+ Q    G+ H+  R++           D    
Sbjct: 343 PLP--------NYFWNGQTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQV 394

Query: 373 EEYFMSQLLDG 383
           + +++   +D 
Sbjct: 395 DAWYLGIYIDA 405


>gi|307609028|emb|CBW98457.1| hypothetical protein LPW_02941 [Legionella pneumophila 130b]
          Length = 512

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 136/419 (32%), Gaps = 52/419 (12%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86
            AA +     V    +A    +  H    ++  F+++++    + L +KG   +Y    +
Sbjct: 19  LAAINKQKDIVFLCEVAEETSYVPHH--PKKIAFLFSAMRHFAQQLKKKGYRVRYTSFDD 76

Query: 87  FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKL---LEKRLQHRVICKSFDDSVLLP 143
             +   +           ++      E  E R  K+   L+ +L   V     D+  L  
Sbjct: 77  PRNQGSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQLTIPVTLHE-DNRFLCK 135

Query: 144 PGSILNHALQMYKVYTPFRKALIQ----------------------------NLVQADLR 175
                N A +  ++   F   +++                            N + +  +
Sbjct: 136 INEFRNWAKEKKQLRMEFFYRMMRQKYHLLVDNDGKPVGGSWNYDAQNRKNANHISSFPK 195

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            L      +T  V      RF  +  Q       +  + AL     F +  +  +   +D
Sbjct: 196 RLEHTRDVITDEVLGLVSARFAKHFGQCHPFNLAVTREQALEEADYFMEHFLCNFGAYQD 255

Query: 236 IPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREF 290
                      S+LS YL+ G+L P +     ++ +    + P +    ++ + L WRE+
Sbjct: 256 AMLKDEISLYHSKLSFYLNAGLLLPLELCQMAEQAYFSKQM-PLNSVEGFIRQILGWREY 314

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R +   +        +      +            ++  TG   I   +RQ +T  + H
Sbjct: 315 VRGIYWLFMPDYGEMNYFNACRPLP------SFFWGEE--TGMFCIKEVVRQTSTEAYSH 366

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
           +  R++          +D +   E++++   D      L +  G   +A      S PY
Sbjct: 367 HIQRLMITGNFALLAGLDPKQVCEWYLAVYADAYEWVELPNTLGMALYADGGLMASKPY 425


>gi|89056132|ref|YP_511583.1| deoxyribodipyrimidine photolyase-related protein [Jannaschia sp.
           CCS1]
 gi|88865681|gb|ABD56558.1| deoxyribodipyrimidine photolyase-related protein [Jannaschia sp.
           CCS1]
          Length = 508

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 141/438 (32%), Gaps = 57/438 (13%)

Query: 7   MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL 66
           M   +V +  D    D  AL  A  + D  ++A  +A    +  H    ++  F++A++ 
Sbjct: 1   MKPRVVLILGDQLCRDGAALREADRDRDVVLMA-EVAEEAGYVPHH--PKKIAFLFAAMR 57

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDS---IEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLL 123
           +   +L   G   +Y +  + +++      +   C      ++      E  E R    L
Sbjct: 58  KFAAALRDDGWQVRYTKLDDAENAGSIPGEILRACEATGAAEVLA---TEPGEFRLIAAL 114

Query: 124 EKRLQHRVICKSFDD------SVLLPPGSILNHALQMYKVYTPFRKAL------------ 165
           E      +    F D             +     L+M   Y   R+              
Sbjct: 115 EDM---PIPVHQFPDDRFLCSHAEFAAWAEGRKELRMEWFYREMRRKTGLLMDGDKPEGG 171

Query: 166 IQNLVQADLRSLPVPAIRLTGPVTPSNIPRF--------FDYPFQAIDPMFPIGEQN-AL 216
             N    +    P          TP ++           F   F  + P +   +   A 
Sbjct: 172 KWNYDHDNREPPPGSVDAAPMHFTPDDVTEEVLTLVASRFHNNFGTLTPFWFATDTGQAR 231

Query: 217 HILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
             L  + K  +  + + +D           S +S YL+ G+L  R+  +  ++ + D   
Sbjct: 232 RALAHWVKTALPRFGDFQDAMMQGERFLYHSIISMYLNAGLLGWREICDAAEQAYRD-GD 290

Query: 273 KPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
            P +    ++ ++I WRE+ R +          +  +  T  +           +  G T
Sbjct: 291 APLNAVEGFIRQIIGWREYMRGIYFLEGPDYTSRNTLKHTRDLP--------GFYWSGET 342

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD---LASN 388
               +  A+ Q     + H+  R++          VD     E++++   D      A N
Sbjct: 343 DMLCLSEAITQTREEAYAHHIQRLMVTGNFALLAGVDPHQVHEWYLAVYADAYEWVEAPN 402

Query: 389 NGGW-QWAASTGNDSVPY 405
             G  Q+A      S PY
Sbjct: 403 VIGMSQFADGGVVGSKPY 420


>gi|153215887|ref|ZP_01950191.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124114531|gb|EAY33351.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 516

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 20/251 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPF 201
           G ++    +       F       L   DL  LP P      +          R      
Sbjct: 163 GYLMTADGKPEGGQWNFDADNRNKLKAPDLLQLPTPLCFDNPVASIKARLERHRIPSIGQ 222

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVL 254
                ++PI    AL +L  FC+  +  +   +D    Q         S+LS  L+  +L
Sbjct: 223 VGESLLWPINRAQALSLLAYFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLL 282

Query: 255 SPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           SPR+        +     +   +    ++ + L WRE+ R +          +  +    
Sbjct: 283 SPREVIEATISAYRAAQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQR 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           +  G T    +  A+ Q    G+ H+  R++           D    
Sbjct: 343 PLP--------SYFWNGQTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQV 394

Query: 373 EEYFMSQLLDG 383
           + +++   +D 
Sbjct: 395 DAWYLGIYIDA 405


>gi|148548232|ref|YP_001268334.1| deoxyribodipyrimidine photolyase-like protein [Pseudomonas putida
           F1]
 gi|148512290|gb|ABQ79150.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           putida F1]
          Length = 508

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 62/382 (16%), Positives = 126/382 (32%), Gaps = 44/382 (11%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRR 119
            I++++    ++L ++G    Y +     +S   +      Q+     +    E  E R 
Sbjct: 49  LIFSAMRHFAQALRERGWQVHYVELDAEGNSGSIVGELRRWQQALGATHTHLTECGEWRL 108

Query: 120 DKLLEKRLQHRVICKS---FDDSVLLPPGSILNHALQMYKVYTPFRKAL----------- 165
           ++ L       V  +              +     L+M   Y   RK             
Sbjct: 109 EQALRDAALPLVWFRDTRFLCSREAFGRWATERRQLRMEHFYRGMRKRTGLLMEPDGSPA 168

Query: 166 --IQNLVQADLRSLPVPAI----------RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213
               N    + + LP               +T  V      RF D+        +P+   
Sbjct: 169 GGAWNFDGDNRKPLPRQLRGPFAAHFAQDDITAAVVALVRQRFSDHYGGVDGFDYPVTHA 228

Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVD 269
            A  + + F    +  + + +D  A        +++S  L+IG+L  R+  + + + + +
Sbjct: 229 EAQQLWQHFLDFGLAAFGDYQDAMAEGEPYLFHARISAALNIGLLDVRRLCDDVDKAWRE 288

Query: 270 LLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
             + P + A  ++ +LI WRE+ R +         G   +        N D  L   +  
Sbjct: 289 GRV-PLNAAEGFIRQLIGWREYVRGIYWQRMPAYAGLNHL--------NNDRALPDFYWT 339

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD---- 384
           G T    +  A+ Q   +G+ H+  R++          +      E++++  +D      
Sbjct: 340 GRTRMRCMAQAIGQTLRLGYAHHIQRLMVTGNFALLAGIVPTAICEWYLAVYMDAFEWVE 399

Query: 385 LASNNGGWQWAASTGNDSVPYF 406
           L +  G    A      S PY 
Sbjct: 400 LPNTLGMVMHADGGYLGSKPYC 421


>gi|71403553|ref|XP_804566.1| DNA photolyase [Trypanosoma cruzi strain CL Brener]
 gi|70867603|gb|EAN82715.1| DNA photolyase, putative [Trypanosoma cruzi]
          Length = 398

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 24/173 (13%)

Query: 16  NDLRITDNKALYAACHN----SDAKVIAVFIATPEQWRQHGI-------SARQSHFIYAS 64
           ND+R+ DN  L  A           VIAV +     + Q          S  ++ F   S
Sbjct: 227 NDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRTFAQPSAVGGYFRQSPMRARFFLES 286

Query: 65  LLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE-------- 116
           L +++ ++ ++                E +    ++   T +F   QY  +E        
Sbjct: 287 LAKLRATIEEE---LHVPLLIRCGRPEEHVPRLAVECGATDVFMTTQYAPHEKNVHDTIV 343

Query: 117 --VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ 167
             ++R K + + +   +   + D +V  P G+       +    +P   ++ Q
Sbjct: 344 ESIKRRKWVSRDVASGLKLTTHDAAVSHPYGNCNGDREAVTAAVSPVPHSVWQ 396


>gi|153827588|ref|ZP_01980255.1| photolyase [Vibrio cholerae MZO-2]
 gi|149737936|gb|EDM52841.1| photolyase [Vibrio cholerae MZO-2]
          Length = 516

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 20/251 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPF 201
           G ++    +       F       L   DL  LP P      +          R      
Sbjct: 163 GYLMTADGKPEGGQWNFDADNRNKLKAPDLLQLPTPLCFDNPVASIKARLERHRIPSIGQ 222

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVL 254
                ++PI    AL +L  FC+  +  +   +D    Q         S+LS  L+  +L
Sbjct: 223 VGESLLWPINRAQALSLLAYFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLL 282

Query: 255 SPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           SPR+        +     +   +    ++ + L WRE+ R +          +  +    
Sbjct: 283 SPREVIEATISAYRAAQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQR 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           +  G T    +  A+ Q    G+ H+  R++           D    
Sbjct: 343 PLP--------SYFWNGQTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQV 394

Query: 373 EEYFMSQLLDG 383
           + +++   +D 
Sbjct: 395 DAWYLGIYIDA 405


>gi|313499188|gb|ADR60554.1| Deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           putida BIRD-1]
          Length = 508

 Score = 59.6 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 126/386 (32%), Gaps = 52/386 (13%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
            I++++    ++L ++G    Y +     N    +  L  +      T +      E  E
Sbjct: 49  LIFSAMRHFAQALRERGWQVHYAELDAEGNSGSIVGELRRWQQALGATHI---HLTECGE 105

Query: 117 VRRDKLLEKRLQHRVICKS---FDDSVLLPPGSILNHALQMYKVYTPFRKAL-------- 165
            R ++ L       V  +              +     L+M   Y   RK          
Sbjct: 106 WRLEQALRDAALPLVWFRDTRFLCSREAFGRWATERRQLRMEHFYRGMRKRTGLLMEPDG 165

Query: 166 -----IQNLVQADLRSLPVPAI----------RLTGPVTPSNIPRFFDYPFQAIDPMFPI 210
                  N    + + LP               +T  V      RF D+        +P+
Sbjct: 166 SPAGGAWNFDGDNRKPLPRQLRGLFAAHFAQDDITAAVVALVRQRFSDHYGGVDGFDYPV 225

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEE 266
               A  + + F    +  + + +D  A        +++S  L+IG+L  R+  + +   
Sbjct: 226 THAEAQQLWQHFLDFGLAVFGDYQDAMAEGEPYLFHARISAALNIGLLDVRRLCDDVDTA 285

Query: 267 FVDLLIKPKSGAFSWLNELI-WREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQ 324
           + +  + P + A  ++ +LI WRE+ R +     P+                N D  L +
Sbjct: 286 WREGRV-PLNAAEGFIRQLIGWREYVRGIYWQRMPAYAELNHL---------NNDRALPE 335

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            +  G T    +  A+ Q   +G+ H+  R++          +      E++++  +D  
Sbjct: 336 FYWTGRTRMRCMAQAIGQTLRLGYAHHIQRLMVTGNFALLAGIVPTAICEWYLAVYMDAF 395

Query: 385 ----LASNNGGWQWAASTGNDSVPYF 406
               L +  G    A      S PY 
Sbjct: 396 EWVELPNTLGMVMHADGGYLGSKPYC 421


>gi|83944363|ref|ZP_00956818.1| hypothetical protein EE36_08973 [Sulfitobacter sp. EE-36]
 gi|83844907|gb|EAP82789.1| hypothetical protein EE36_08973 [Sulfitobacter sp. EE-36]
          Length = 509

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 131/396 (33%), Gaps = 54/396 (13%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL  A    D  V+A  +A    + +H    ++   I+A++ +   +L Q G    Y Q 
Sbjct: 19  ALAQADKARDTVVMA-EVADEAAYVRHH--PKKIALIFAAMRKFAHALEQDGWTVAYTQL 75

Query: 85  SNFDDS---IEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE------KRLQHRVICKS 135
            + D++   +  L     Q   +++      E  E R    L+        L       +
Sbjct: 76  DDTDNAGSIVGELLRRAAQTGASQVLA---TEPGEWRLIDKLKYAPLKVHLLPDDRFLAT 132

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFR-----------KALIQNLVQADLRSLPVPAIRL 184
             +       +   +AL+M   Y   R            A  +     D R      + +
Sbjct: 133 HAE---FEAWAEGRNALRMEYFYREMRRKTGLLMEGDQPAGGKWNFDHDNRKAAPEDVTV 189

Query: 185 TGPVTPSNIPRFFDY----------PFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQ 233
            GP+         +            F A++P +       AL  L  F    +  + + 
Sbjct: 190 DGPLRFDPDATTREVLELVQARFGDNFGALEPFWFATTRAEALQALDHFIANALPRFGDY 249

Query: 234 RDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WR 288
           +D    +      + LSPYL+IG+L+  +       +       P + A  ++ ++I WR
Sbjct: 250 QDAMLNENEFLYHAILSPYLNIGLLNVTEI-CEAAADAYAAGHAPINAAEGFIRQIIGWR 308

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+ R +          +  +     + W            G T    +  A+ Q  T  +
Sbjct: 309 EYVRGIYFIEGPDYTARNILGHDRDLPW------FYWG--GETRMNCVAKAVGQTRTQAY 360

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            H+  R++          +D     E++++   D  
Sbjct: 361 AHHIQRLMVTGNFALLAGIDPAQVHEWYLAVYADAF 396


>gi|261855835|ref|YP_003263118.1| deoxyribodipyrimidine photolyase-related protein [Halothiobacillus
           neapolitanus c2]
 gi|261836304|gb|ACX96071.1| deoxyribodipyrimidine photolyase-related protein [Halothiobacillus
           neapolitanus c2]
          Length = 511

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/388 (15%), Positives = 119/388 (30%), Gaps = 59/388 (15%)

Query: 39  AVFIATPEQWRQHGISAR-QSHFIYASLLQVQKSLSQKGIVFQYHQC--SNFDDSIEWLD 95
           AVF+A       H  S + +    ++++     +L  +G+   Y Q          + L 
Sbjct: 28  AVFMAEATGEAAHVWSHKLRIALFFSAMRHFAAALRSEGLTVHYAQIGSPPHGALADALA 87

Query: 96  SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL-QHRVICKSFDDSV-------------- 140
           +  +  +  ++ +         R +  L+    QH+V  K + D                
Sbjct: 88  AAIVVHQPQQVVW---VSAGAERLNHALKATCDQHKVPWKIYPDRHFIATENQFSDWAKG 144

Query: 141 ------------LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPV 188
                       L     +L    Q       F               LP P       +
Sbjct: 145 RKSLRLEYWYRQLRQQTGLLMEDDQPIGGAWNFDAQNRAAFDTRGPGLLPAPMGFPPDAI 204

Query: 189 TPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ---- 240
           T   I      F  +P       +PI  +     L  F   ++  +   +D         
Sbjct: 205 TQQVIETVARYFPGHPGALDGFDWPITREQVEAALEDFITHRLPLFGHYQDAMWTDEPWL 264

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYP 299
             S+LS  L++ ++ P       +  +    + P + A  ++ + L WRE+ R L A Y 
Sbjct: 265 YHSRLSAALNLKLIDPATVCRAAEAAYRQGQV-PLAAAEGFIRQILGWREYVRGLYAHYG 323

Query: 300 SVCMGKPFIPWTEKIE---WNKDSHLLQAWKQ-GYTGFPIIDAAMRQLNTIGWMHNRLRM 355
              +    +     +    W  D+      +  G T        MR     G+ H+  R+
Sbjct: 324 DEWLDMNALNAQHDLPDFFWTGDTPAHCLSQTIGQT--------MR----TGYAHHIQRL 371

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           +          V  R   E++++  +D 
Sbjct: 372 MVTGLYCLLAGVRPRAVHEWYLAVYVDA 399


>gi|54293212|ref|YP_125627.1| hypothetical protein lpl0260 [Legionella pneumophila str. Lens]
 gi|53753044|emb|CAH14491.1| hypothetical protein lpl0260 [Legionella pneumophila str. Lens]
          Length = 512

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 138/419 (32%), Gaps = 52/419 (12%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY---HQ 83
            AA +     V    +A    +  H    ++  F+++++    + L +KG   +Y     
Sbjct: 19  LAAINKQKDIVFLCEVAEETSYVSHH--PKKIAFLFSAMRHFAQQLKKKGYRVRYTAFDD 76

Query: 84  CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP 143
             N     + L     +++V+ +      E   ++    L+ +L   V     D+  L  
Sbjct: 77  PRNQGSFAKELLRAIEEEQVSAISLTEPGEWRVLKIFHDLKSQLTIPVTLHE-DNRFLCK 135

Query: 144 PGSILNHALQMYKVYTPFRKALIQ----------------------------NLVQADLR 175
                N A +  ++   F   +++                            N + +  +
Sbjct: 136 INEFRNWAKEKKQLRMEFFYRMMRQKYHLLVDNDGKPVGGSWNYDAQNRKNANHISSFPK 195

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            L      +T  V      RF  +  Q       +  + AL     F +  +  +   +D
Sbjct: 196 RLEHTRDVITDEVLGLVSARFAKHFGQCHPFNLAVTREQALEEADYFMEHFLCNFGAYQD 255

Query: 236 IPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREF 290
                      S+LS YL+ G+L P +     ++ +    + P +    ++ + L WRE+
Sbjct: 256 AMLKDEISLYHSKLSFYLNAGLLLPLELCQMAEQAYFSKQM-PLNSVEGFIRQILGWREY 314

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R +   +        +      +            ++  TG   I   +RQ +T  + H
Sbjct: 315 VRGIYWLFMPDYGEMNYFNACRPLP------SFFWGEE--TGMFCIKEVVRQTSTEAYSH 366

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
           +  R++          +D +   E++++   D      L +  G   +A      S PY
Sbjct: 367 HIQRLMITGNFALLAGLDPKQVCEWYLAVYADAYEWVELPNTLGMALYADGGLMASKPY 425


>gi|15601564|ref|NP_233195.1| hypothetical protein VCA0809 [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121591152|ref|ZP_01678458.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121729783|ref|ZP_01682220.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147672514|ref|YP_001215266.1| hypothetical protein VC0395_0425 [Vibrio cholerae O395]
 gi|153820068|ref|ZP_01972735.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153823833|ref|ZP_01976500.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229506037|ref|ZP_04395546.1| hypothetical protein VCF_001251 [Vibrio cholerae BX 330286]
 gi|229510107|ref|ZP_04399587.1| hypothetical protein VCE_001508 [Vibrio cholerae B33]
 gi|229517763|ref|ZP_04407208.1| hypothetical protein VCC_001788 [Vibrio cholerae RC9]
 gi|229605568|ref|YP_002876272.1| hypothetical protein VCD_000514 [Vibrio cholerae MJ-1236]
 gi|254849966|ref|ZP_05239316.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255746436|ref|ZP_05420383.1| hypothetical protein VCH_002821 [Vibrio cholera CIRS 101]
 gi|262158209|ref|ZP_06029326.1| DNA photolyase [Vibrio cholerae INDRE 91/1]
 gi|262169085|ref|ZP_06036778.1| DNA photolyase [Vibrio cholerae RC27]
 gi|9658236|gb|AAF96707.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546998|gb|EAX57142.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121628480|gb|EAX60969.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|126509391|gb|EAZ71985.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126518648|gb|EAZ75871.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146314897|gb|ABQ19437.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227015457|gb|ACP11666.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229345799|gb|EEO10772.1| hypothetical protein VCC_001788 [Vibrio cholerae RC9]
 gi|229352552|gb|EEO17492.1| hypothetical protein VCE_001508 [Vibrio cholerae B33]
 gi|229356388|gb|EEO21306.1| hypothetical protein VCF_001251 [Vibrio cholerae BX 330286]
 gi|229372054|gb|ACQ62476.1| hypothetical protein VCD_000514 [Vibrio cholerae MJ-1236]
 gi|254845671|gb|EET24085.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255736190|gb|EET91588.1| hypothetical protein VCH_002821 [Vibrio cholera CIRS 101]
 gi|262022366|gb|EEY41074.1| DNA photolyase [Vibrio cholerae RC27]
 gi|262029891|gb|EEY48538.1| DNA photolyase [Vibrio cholerae INDRE 91/1]
          Length = 516

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 20/251 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPF 201
           G ++    +       F       L   DL  LP P      +          R      
Sbjct: 163 GYLMTADGKPEGGQWNFDADNRNKLKSPDLLQLPTPLCFDNPVASIKARIERHRIPSIGQ 222

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVL 254
                ++PI    AL +L  FC+  +  +   +D    Q         S+LS  L+  +L
Sbjct: 223 VGESLLWPINRAQALSLLAHFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLL 282

Query: 255 SPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           SPR+        +     +   +    ++ + L WRE+ R +          +  +    
Sbjct: 283 SPREVIEATISAYRAAQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQR 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           +  G T    +  A+ Q    G+ H+  R++           D    
Sbjct: 343 PLP--------SYFWNGQTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQV 394

Query: 373 EEYFMSQLLDG 383
           + +++   +D 
Sbjct: 395 DAWYLGIYIDA 405


>gi|119476544|ref|ZP_01616895.1| hypothetical protein GP2143_08834 [marine gamma proteobacterium
           HTCC2143]
 gi|119450408|gb|EAW31643.1| hypothetical protein GP2143_08834 [marine gamma proteobacterium
           HTCC2143]
          Length = 515

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 120/391 (30%), Gaps = 59/391 (15%)

Query: 61  IYASLLQVQKSLSQKGIV---FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            +A++     SL   G            +F    E + S C +  V +  Y      +E 
Sbjct: 53  FFAAMESFASSLKAAGHHVKHLTLDDTVDFKTINELIASLCTEHSVKRFDYQH---PDEY 109

Query: 118 RRDKLLEKRLQHRVICKSFDD-SVLLPPGS-------------------------ILNHA 151
           R    L+K LQ  +    F     LL                             IL   
Sbjct: 110 RLADQLKK-LQLGIPVHCFGSEHFLLAQDELTDYIKVGKHNRMESFYRKLRKRFNILMDD 168

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            Q       F       L  ADL+ +P P   A  +   +                D ++
Sbjct: 169 DQPLGERWNFDGENRNKLKAADLKEIPQPLLFANPVGTYLDRIQRHHIDTLGRATEDLLW 228

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY-------LSIGVLSPRQCWN 261
           PI  Q +L +L  FC   +  +   +D     G S+ S Y       L+  +L P Q   
Sbjct: 229 PIDRQQSLQLLDFFCLHCLPNFGRFQDAMTHNGESRWSLYHSRISFALNSKMLHPMQVIE 288

Query: 262 RLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEKIEWNK 318
                F +       +    ++ + L WRE+ R       P       F   T       
Sbjct: 289 AALARFAEANSGVDLAQVEGFVRQILGWREYVRAVYWVNMPDYAALNSFDAKTN------ 342

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
              L + +  G T    +  A+ Q     + H+  R++          +D    +++++ 
Sbjct: 343 ---LPEFFWTGKTKMACMKQAIDQSLDYAYAHHIQRLMVTGNFAMLAGIDPDQVDQWYLG 399

Query: 379 QLLDG----DLASNNGGWQWAASTGNDSVPY 405
             +D     ++ +  G  Q+A      + PY
Sbjct: 400 VYIDAVEWVEMPNTRGMSQFADGGLIATKPY 430


>gi|254480091|ref|ZP_05093339.1| Deoxyribodipyrimidine photolyase-related protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039653|gb|EEB80312.1| Deoxyribodipyrimidine photolyase-related protein [marine gamma
           proteobacterium HTCC2148]
          Length = 517

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 116/364 (31%), Gaps = 48/364 (13%)

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC-LQQRVTKLFYNRQYEI 114
            +  FI++++   +  L  +G    Y+      +S++            + +   R  E 
Sbjct: 53  HKIAFIFSAMRHFRDELRAQGFQVYYYPFEEGLNSLQGAVELALKASGCSSV---RCCEP 109

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQ------- 167
            + R  K + + +      +  DD  L  P      A    ++   +   +++       
Sbjct: 110 GDYRLFKSMSEWVFSVPFERVEDDRFLSTPAEFAAWADGRKQLRMEYFYRIMRKKYGLLL 169

Query: 168 --------------------NLVQADLRSLPVPAI-RLTGPVTPSNIPRFFDYPFQAIDP 206
                                  Q  +   P   +  +T  V       F ++P      
Sbjct: 170 ELDGTAAGGKWNFDAENRKGWRSQKPIPDRPSLELDEITTDVIELVQREFAEHPGDLSQF 229

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNR 262
              +  + A   L  F    +  +   +D  A +        +S YL+ G+L P    NR
Sbjct: 230 YLSVSAEGAEAQLSWFIDHCLADFGTYQDALAEESPWLFHGLVSAYLNTGLLDPLDVCNR 289

Query: 263 LKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDS 320
           ++  + D  + P + A  ++ + L WRE+ R +  +Y P               +W    
Sbjct: 290 VEAAWRDGRV-PLAAAEGFIRQVLGWREYVRGMYWYYMPDYAELNVLGAKRALPDWFW-- 346

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
                     T    +  A+ Q   +G+ H+  R++          +D      +F++  
Sbjct: 347 -------TAETDMRCMHKALAQTLELGYGHHIQRLMVIGNFALLAGLDVEQVCAWFLAVY 399

Query: 381 LDGD 384
           +D  
Sbjct: 400 IDAF 403


>gi|16330750|ref|NP_441478.1| hypothetical protein slr1343 [Synechocystis sp. PCC 6803]
 gi|1653243|dbj|BAA18158.1| slr1343 [Synechocystis sp. PCC 6803]
          Length = 504

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/387 (15%), Positives = 126/387 (32%), Gaps = 46/387 (11%)

Query: 31  HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDS 90
               ++V  + I + E  RQ     ++   +++++    + L  +G    Y   ++F   
Sbjct: 23  QGDRSQVPVLLIESAEFARQRPYHRQKLVLVWSAMRHFAEDLRAEGWSVTYEIAADFLTP 82

Query: 91  IEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR--------LQHRVICKSFDD---- 138
              L  +   Q V+ L   +     +   +  L+          L +     S +D    
Sbjct: 83  ---LHHWLKTQGVSHL---QVMAPGDRPFEAWLKSLTLPCELTLLPNNHFLWSREDFSAW 136

Query: 139 -----SVLLP--------PGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIR 183
                 +LL            IL    Q       F +   +   +     + L  P   
Sbjct: 137 AGDRKRLLLEDFYRAGRKRWQILMVDDQPVGGRWNFDQDNRKPAKKNLSPPKPLSFPPDD 196

Query: 184 LTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ--- 240
           +T  V             Q     + +  Q+AL  L+ F    +  +   +D   +    
Sbjct: 197 ITQQVIERIEQLNLPGYGQLSGFQWGVSRQDALQGLKYFVDVGLSQFGTYQDAMVMGQKT 256

Query: 241 -GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY- 298
              S +SPYL++G+L+P +        F    I   +        L WRE+ + +  +  
Sbjct: 257 LWHSLISPYLNLGLLTPLEVIEAATNAFATQDISLNNVEGFIRQVLGWREYMQGIYQWVD 316

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                G  F       E          W+  +T    +   + Q+   G+ H+  R++  
Sbjct: 317 EDYGQGNWFNHDFPLPE--------FYWQSSHTKMNCLATVLNQVEETGYAHHIQRLMVL 368

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           S     + V+ +  +++F +  +D   
Sbjct: 369 SNFALIVGVNPQKLQDWFHAAFIDAYD 395


>gi|229526680|ref|ZP_04416084.1| hypothetical protein VCA_000810 [Vibrio cholerae bv. albensis
           VL426]
 gi|229336838|gb|EEO01856.1| hypothetical protein VCA_000810 [Vibrio cholerae bv. albensis
           VL426]
          Length = 516

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 20/251 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPF 201
           G ++    +       F       L   DL  LP P      +          R      
Sbjct: 163 GYLMTADGKPEGGQWNFDADNRNKLKAPDLLQLPTPLCFDNPVASIKARLERHRIPSIGQ 222

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVL 254
                ++PI    AL +L  FC+  +  +   +D    Q         S+LS  L+  +L
Sbjct: 223 VGESLLWPINRAQALSLLAHFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLL 282

Query: 255 SPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           SPR+        +     +   +    ++ + L WRE+ R +          +  +    
Sbjct: 283 SPREVIEATISAYRAAQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQR 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           +  G T    +  A+ Q    G+ H+  R++           D    
Sbjct: 343 PLP--------SYFWNGQTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQV 394

Query: 373 EEYFMSQLLDG 383
           + +++   +D 
Sbjct: 395 DAWYLGIYIDA 405


>gi|118594164|ref|ZP_01551511.1| hypothetical protein MB2181_00810 [Methylophilales bacterium
           HTCC2181]
 gi|118439942|gb|EAV46569.1| hypothetical protein MB2181_00810 [Methylophilales bacterium
           HTCC2181]
          Length = 512

 Score = 59.6 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 95/254 (37%), Gaps = 22/254 (8%)

Query: 162 RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRK 221
           R        + +          L   +   NI  F +    A +  +PI  + +  +L +
Sbjct: 186 RMRWDGKPPEPEDSRPKHNHKELLEEINSVNIEHFGE--ANAENFRWPIDRKESFALLEQ 243

Query: 222 FCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSG 277
           F K  + Y+ + +D           S LS  L+  +L+P +    ++  +++  I P + 
Sbjct: 244 FIKNNLRYFGDFQDAMHSDSWRLFHSFLSFSLNTKMLAPLEVIKMVEVSYLEDSI-PLNA 302

Query: 278 AFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
              ++ + L WRE+ R +  A  P       F         N D+ L + +  G T    
Sbjct: 303 VEGFIRQILGWREYIRGIYWAKMPEYSHLNYF---------NYDTDLPKWFWTGKTKMNC 353

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGG 391
           + +++ Q  T  + H+  R++          +D +    +++   +D      L +  G 
Sbjct: 354 LASSITQSLTHSYAHHIQRLMVIGNFSLLAGIDPQKVHYWYLGIYIDAFEWVELPNTIGM 413

Query: 392 WQWAASTGNDSVPY 405
            Q+A      + PY
Sbjct: 414 SQYADGGLLATKPY 427


>gi|323356490|ref|YP_004222886.1| hypothetical protein MTES_0042 [Microbacterium testaceum StLB037]
 gi|323272861|dbj|BAJ73006.1| uncharacterized protein [Microbacterium testaceum StLB037]
          Length = 478

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/380 (14%), Positives = 122/380 (32%), Gaps = 48/380 (12%)

Query: 41  FIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQ 100
           FI +  ++R+      +   + +++      L  +G   +     +       L+     
Sbjct: 27  FIESAPRFRKLPYHRHKIVLLISAMRHTAARLEGEGRTVRRITLDDDLTFKAGLERLLKA 86

Query: 101 QRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS-------------- 146
            RVT+L +      N    +++      H V  +   D + L P                
Sbjct: 87  HRVTELTWMSD--PNRPVDERIARICQAHDVETEVLPDGLFLTPEEDVDGWFAEHPTPLM 144

Query: 147 ------------ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR---LTGPVTPS 191
                       IL    +       F     + L +  +   P+P I    +T  V   
Sbjct: 145 EDFYHWQRRRTGILMDGGKPAGRRWNFDADNRKALPKKGVDIPPLPQIEPDEITRAVIAE 204

Query: 192 NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSP 247
               F ++P  A +   P+  + +   L  F  E+++ +    D           + +SP
Sbjct: 205 VDELFPEHPGAAEEFWLPVTPEESRDWLDTFVAERLHDFGRYEDAMKADEPFLFHAIISP 264

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKP 306
            L+IG+L+  +               P +    ++ ++I WRE+ R +   +P +     
Sbjct: 265 MLNIGLLTVEEVVAAATRT-----DAPLASVEGFVRQVIGWREYMRGMYRAHPKLEHVNA 319

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPI-IDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                   ++      + +        PI +   + +++  G+ H+  R++         
Sbjct: 320 LHLEKRIEKYWYSGERMPS------DLPIPVRTVLERVHRWGYAHHIERLMVLGNWFLLQ 373

Query: 366 LVDWRIGEEYFMSQLLDGDL 385
               R    +F++  +D   
Sbjct: 374 GYAPRQVNAWFLALFVDAYD 393


>gi|225872026|ref|YP_002753480.1| deoxyribodipyrimidine photolyase homolog [Acidobacterium capsulatum
           ATCC 51196]
 gi|225794372|gb|ACO34462.1| deoxyribodipyrimidine photolyase homolog [Acidobacterium capsulatum
           ATCC 51196]
          Length = 548

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/373 (16%), Positives = 121/373 (32%), Gaps = 30/373 (8%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN 86
           + A   +   +  ++  TP  +   G+     H   ++L  +Q   +++ +     +   
Sbjct: 76  HFALKQARRGIKIIYEFTPGIF-ADGLEQATRHHRLSALTMMQP--AEREMSLDVEEARV 132

Query: 87  FDDSIEWLDSYC---LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLP 143
               ++ ++       +     +F            D+   +  Q   I    +   +  
Sbjct: 133 RGIPLQLVEDTTWCSTESDFDSVFA---PTTKHFLMDRFYRRMRQKTGILMQPNGEPIGG 189

Query: 144 PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA 203
             S      + Y+   P     +    +    S+   A+ L     PS+      +    
Sbjct: 190 KYSYDAENRRPYRGQPP-----VPERPRFHPDSITQEALHLVAREFPSHFGTLDGFDLPV 244

Query: 204 IDPMFPIGEQNAL-HILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNR 262
                      AL H+L  F   +      + D+      S+LS  ++I  L PR+  + 
Sbjct: 245 TQAQADEAWSFALEHLLPHFGPFEDAMAHNEPDL----FHSRLSALINISRLLPRRLIDD 300

Query: 263 LKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAF---YPSVCMGKPFIPWTEKIEWNK 318
           +        I P + A  ++ + L WREF RHL      Y  +   +      +     +
Sbjct: 301 VARAAHSERI-PLASAEGFIRQILGWREFMRHLHRRTDGYRQLPGQRNNSSSDDPYAGAE 359

Query: 319 DSHLLQAWKQ------GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            S L              +G   +D  + Q+   GW H+  R++  S L   L V  R  
Sbjct: 360 PSALNAHRPLPAAFWGRRSGLHCLDTVIDQVWREGWSHHITRLMVLSNLSTLLGVSPRAL 419

Query: 373 EEYFMSQLLDGDL 385
            ++F    +D   
Sbjct: 420 TDWFWIAYIDAYD 432


>gi|134291312|ref|YP_001115081.1| deoxyribodipyrimidine photolyase-related protein [Burkholderia
           vietnamiensis G4]
 gi|134134501|gb|ABO58826.1| deoxyribodipyrimidine photolyase-related protein [Burkholderia
           vietnamiensis G4]
          Length = 509

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 127/389 (32%), Gaps = 58/389 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYE-INE 116
           ++A++ +  + L + G V  Y +  +          LD    +    ++    +Y   +E
Sbjct: 50  VFAAMRRFAELLREAGHVVHYIEIDDPLNRQAIAANLDMLADRYGAHRI----EYLLPDE 105

Query: 117 VRRDKLLEK-RLQHRVICKSFDDSVLLP-PGSI--LNHALQMYKVYTPFRKALIQNLVQA 172
            R D+ L+      RV  +  D +        +  L    + + +   +R   +++ V  
Sbjct: 106 WRVDRQLQAYAASARVPVQVLDTNHFYTTRDEVASLFGNSRTWVMDRFYRSMRVRHRVLL 165

Query: 173 DLRSLP----------VPAIRLTGPVTPSNIPRFFDY----------------PFQAIDP 206
           D +  P                  P  P +     D+                   A D 
Sbjct: 166 DAQGRPAGGQWNYDAENREAWSGTPAEPPDWRPRHDHRALWSRIVAAGVRSFGAPSADDF 225

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNR 262
            +P+    AL  L  F +  + ++   +D           S LS  L++ +L+PR+   R
Sbjct: 226 RWPVDRSEALACLESFIRHGLPFFGRFQDAMHRDARRLFHSMLSFALNVKMLNPREVVER 285

Query: 263 LKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDS 320
            +  +      P +    ++ + L WREF R +     P       F        W  + 
Sbjct: 286 AEHAYR-TGAAPLAAVEGFIRQILGWREFVRGVYWARMPGYADSNAFGHRRALPHWFWN- 343

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
                   G T    +  A+ Q       H+  R++          ++ R   ++++   
Sbjct: 344 --------GSTRMACMAHALTQSLDAAHAHHIQRLMVIGNFALLAGLEPRQVHQWYLGVY 395

Query: 381 LDGD----LASNNGGWQWAASTGNDSVPY 405
           +D      L +  G  Q+A      + PY
Sbjct: 396 IDAFEWVELPNTLGMSQYADGGAMATKPY 424


>gi|254227101|ref|ZP_04920654.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125620371|gb|EAZ48752.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 516

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 20/251 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPF 201
           G ++    +       F       L   DL  LP P      +          R      
Sbjct: 163 GYLMTADGKPEGGQWNFDADNRNKLKAPDLLQLPTPLCFDNPVASIKARLERHRIPSIGQ 222

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVL 254
                ++PI    AL +L  FC+  +  +   +D    Q         S+LS  L+  +L
Sbjct: 223 VGESLLWPINRAQALSLLAHFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLL 282

Query: 255 SPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           SPR+        +     +   +    ++ + L WRE+ R +          +  +    
Sbjct: 283 SPREVIEATISAYRAAQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQR 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           +  G T    +  A+ Q    G+ H+  R++           D    
Sbjct: 343 PLP--------SYFWNGQTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQV 394

Query: 373 EEYFMSQLLDG 383
           + +++   +D 
Sbjct: 395 DAWYLGIYIDA 405


>gi|225425190|ref|XP_002264876.1| PREDICTED: similar to predicted protein [Vitis vinifera]
          Length = 467

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 22/27 (81%)

Query: 418 FDPQGTFIRHWLPELNNVPTQYIHAPH 444
           +DP+G ++RHWLPEL  VPT++IH P 
Sbjct: 108 YDPEGEYVRHWLPELARVPTEWIHHPW 134


>gi|289208006|ref|YP_003460072.1| deoxyribodipyrimidine photolyase-related protein [Thioalkalivibrio
           sp. K90mix]
 gi|288943637|gb|ADC71336.1| deoxyribodipyrimidine photolyase-related protein [Thioalkalivibrio
           sp. K90mix]
          Length = 525

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 24/250 (9%)

Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR----FFDYPF 201
            +L            F     ++  +     LP P       +T   I        D P 
Sbjct: 174 DVLMEGGGPAGGQWNFDAENRRHFGREGPGRLPTPKAFPPDALTRKVIQTIAEQLPDLPG 233

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPR 257
           +  D  +P+    A   L  F   ++ ++ + +D           ++LS  L++ +L PR
Sbjct: 234 RCEDFDWPVTPAQAREALDDFIAHRLPHFGQYQDAMWSGEPWLYHARLSAALNLHLLGPR 293

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE- 315
           +      E        P + A  ++ + L WRE+ R L   +         +   E +  
Sbjct: 294 EVI-AAAEGAWHSGHTPLAAAEGFVRQILGWREYVRGLYFHFGERWHEWNALEAGEPLPA 352

Query: 316 --WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
             W+ ++ +    +           A+ Q   +G+ H+  R++      + L V      
Sbjct: 353 LYWDANTEMHCLHE-----------AIGQTLRLGYAHHIQRLMVTGLFAQLLGVQPAAIH 401

Query: 374 EYFMSQLLDG 383
            +++   +D 
Sbjct: 402 GWYLGIYVDA 411


>gi|153830157|ref|ZP_01982824.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148874375|gb|EDL72510.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 516

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 20/251 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPF 201
           G ++    +       F       L   DL  LP P      +          R      
Sbjct: 163 GYLMTADGKPEGGQWNFDADNRNKLKAPDLLQLPTPLCFDNPVASIKARLERHRIPSIGQ 222

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVL 254
                ++PI    AL +L  FC+  +  +   +D    Q         S+LS  L+  +L
Sbjct: 223 IGESLLWPINRAQALSLLAHFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLL 282

Query: 255 SPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           SPR+        +     +   +    ++ + L WRE+ R +          +  +    
Sbjct: 283 SPREVIEATISAYRAAQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQR 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           +  G T    +  A+ Q    G+ H+  R++           D    
Sbjct: 343 PLP--------SYFWNGQTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQV 394

Query: 373 EEYFMSQLLDG 383
           + +++   +D 
Sbjct: 395 DAWYLGIYIDA 405


>gi|297580169|ref|ZP_06942096.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297535815|gb|EFH74649.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 516

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 20/251 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPF 201
           G ++    +       F       L   DL  LP P      +          R      
Sbjct: 163 GYLMTADGKPEGGQWNFDADNRNKLKAPDLLQLPTPLCFDNPVASIKARLERHRIPSIGQ 222

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVL 254
                ++PI    AL +L  FC+  +  +   +D    Q         S+LS  L+  +L
Sbjct: 223 IGESLLWPINRAQALSLLAHFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLL 282

Query: 255 SPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           SPR+        +     +   +    ++ + L WRE+ R +          +  +    
Sbjct: 283 SPREVIEATISAYRAAQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQR 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           +  G T    +  A+ Q    G+ H+  R++           D    
Sbjct: 343 PLP--------NYFWNGQTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQV 394

Query: 373 EEYFMSQLLDG 383
           + +++   +D 
Sbjct: 395 DAWYLGIYIDA 405


>gi|289627716|ref|ZP_06460670.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649508|ref|ZP_06480851.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330866274|gb|EGH00983.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 469

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/412 (15%), Positives = 132/412 (32%), Gaps = 59/412 (14%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLF- 107
               ++   I++++    ++L ++G+  QY    +          L  +    +  +L  
Sbjct: 2   PHHPQKIVLIFSAMRHFAEALRERGVRVQYVTLDDPQNTGSVPGELRRWQALLQADELHV 61

Query: 108 --------------------YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSI 147
                               ++        R +     + + ++  + F   +      +
Sbjct: 62  TECGDWRLEQSIKDCGLPIQWHADTRFLCSREEFSSWAQGKKQLRMEFFYREMRRKSRLL 121

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSNIPRFFDYPFQAID 205
           LN           F     + L +      P+   A  +T  V      RF  +     D
Sbjct: 122 LNGDGTPVGGAWNFDAENRKALPKGVAAPYPMRFSADGITRDVLTLVAERFASHYGSLDD 181

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWN 261
             +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L  RQ  +
Sbjct: 182 FDYPVTHVDAQALWDYFLDFGLAGFGDYQDAMATDEPFLFHARISAALNIGLLDLRQICS 241

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKD 319
            ++  +    +   + A  ++ +LI WRE+ R +     P    G  F            
Sbjct: 242 DVESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPEYADGNLFG---------NS 291

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIGEEYFMS 378
             L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I E Y   
Sbjct: 292 RPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPSQICEWYLAI 351

Query: 379 QLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            +   D     +  G    A      S PY                G +I+ 
Sbjct: 352 YMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 390


>gi|332520701|ref|ZP_08397163.1| deoxyribodipyrimidine photolyase-related protein [Lacinutrix
           algicola 5H-3-7-4]
 gi|332044054|gb|EGI80249.1| deoxyribodipyrimidine photolyase-related protein [Lacinutrix
           algicola 5H-3-7-4]
          Length = 510

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/390 (14%), Positives = 125/390 (32%), Gaps = 59/390 (15%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            +A++   +  L Q      Y+      N  + +E L     +  +    Y    E +E 
Sbjct: 50  FFAAMRDFKTVLKQNNCKVIYYTLDHKNNTQNLVENLKYLIKKHNIKAFEYQ---EPDEY 106

Query: 118 RRDKLLEKRLQH-RVICKSFDDSVLL--PPGSILNHALQMYKVYTPF------------- 161
           R DK L +  +   +  K+F             L    +   +   F             
Sbjct: 107 RLDKQLVEFCEELNINTKAFSTEHFYTNRKDLALFFKGKKQWLMESFYRDMRKKRNILLV 166

Query: 162 ---------------RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP 206
                          R    +N      +S       +   +   NI    ++  +  + 
Sbjct: 167 ANQPEGGKWNYDKSNRNKWNENTSIPKYKSYKNNVADIVNLIASQNIETIGNFNTEYFE- 225

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNR 262
            +PI    AL+ L+ FC+  + ++ + +D           S+LS  L+  ++SP      
Sbjct: 226 -YPINRSQALNQLKYFCEHLLEHFGDYQDAMHTTQVYLYHSRLSFSLNCKIISPNAVITT 284

Query: 263 LKEEFVDLLIK-PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEW-NKD 319
           +   +         S    ++ ++I WRE+ R +             +P  + +      
Sbjct: 285 VLNYWRTHGKHISISQVEGFIRQIIGWREYMRGMYW---------ALMPDYKLLNTLENH 335

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
           + L + +  G T    +  ++      G+ H+  R++          ++    + +++  
Sbjct: 336 NKLPEFFWTGKTKMNCLKTSIENSLNNGYAHHIQRLMITGNFALLTQINPDEVDAWYLGI 395

Query: 380 LLDG----DLASNNGGWQWAASTGNDSVPY 405
            +D      L +  G  Q+A      + PY
Sbjct: 396 YVDAIEWVQLPNTRGMSQFADGGKIATKPY 425


>gi|330975063|gb|EGH75129.1| deoxyribodipyrimidine photolyase-like protein protein [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 503

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 133/418 (31%), Gaps = 59/418 (14%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQR 102
           E+        ++   I++++    ++L ++G+  QY    +          L  +    R
Sbjct: 46  EEASHVPHHPQKIVLIFSAMRHFAEALRERGVRVQYVMLDDPQNTGSVPGELQRWQGLLR 105

Query: 103 VTKLF---------------------YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141
             +L                      ++        R +     + + ++  + F   + 
Sbjct: 106 AEELHVTECGDWRLEQSIKDCGLPIQWHADTRFLCSRDEFSSWAQGKKQLRMEFFYREMR 165

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGPVTPSNIPRFFDY 199
                +LN           F     + L +      P    A  +T  V      RF  +
Sbjct: 166 RKSRLLLNGDGTPVGGAWNFDAENRKALPKGMAAPYPLRFSADTITRQVLTLVGERFASH 225

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLS 255
                +  +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L 
Sbjct: 226 YGSLDNFDYPVTHADAQALWEYFLDYGLAGFGDYQDAMATDEPFLFHARISAALNIGLLD 285

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEK 313
            RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F      
Sbjct: 286 LRQICSDVESAYWSGRV-GLNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNLFG----- 339

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIG 372
                   L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I 
Sbjct: 340 ----NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPEQIC 395

Query: 373 EEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           E Y    +   D     +  G    A      S PY                G +I+ 
Sbjct: 396 EWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 440


>gi|325947635|gb|ADZ46042.1| CPD photolyase [Dunaliella tertiolecta]
          Length = 236

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 62/214 (28%), Gaps = 9/214 (4%)

Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP-RFFDYPFQAI 204
           +I     +    +     AL Q            P    +  +    +            
Sbjct: 22  TIRPKVHKNLPEFLREYPALPQAPTAWPSSLSRQPDNGPSSSLDWDALIAEALQRGSSVP 81

Query: 205 DPMF-PIGEQN---ALHILRKFCK-EKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQC 259
           +  +   GE     AL     F    ++  Y  +R+ P+ +  S LSPYL  G L  ++ 
Sbjct: 82  EVHWVKPGETASKLALEGPEGFLTPSRLAQYSAKRNDPSAKALSNLSPYLHFGQLLAQRI 141

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSV-CMGKPFIPWTEKIEWNK 318
                +                +      + +      Y S+ C  +           +K
Sbjct: 142 ALSASKHRAKYKEAVDGFLEELVVRRELADNFCEYTPNYDSLDCAAEWAKESLNVHRTDK 201

Query: 319 DSHLL--QAWKQGYTGFPIIDAAMRQLNTIGWMH 350
              L      +QG T     +A+  ++  +G MH
Sbjct: 202 REKLYSRDQLEQGRTHDEPWNASQMEMVHLGKMH 235


>gi|229522359|ref|ZP_04411775.1| hypothetical protein VIF_002910 [Vibrio cholerae TM 11079-80]
 gi|254284444|ref|ZP_04959411.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150425229|gb|EDN17005.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|229340344|gb|EEO05350.1| hypothetical protein VIF_002910 [Vibrio cholerae TM 11079-80]
          Length = 516

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 20/251 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPF 201
           G ++    +       F       L   DL  LP P      +          R      
Sbjct: 163 GYLMTADGKPEGGQWNFDADNRNKLKAPDLLQLPTPLCFDNPVASIKARLERHRIPSIGQ 222

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVL 254
                ++PI    AL +L  FC+  +  +   +D    Q         S+LS  L+  +L
Sbjct: 223 IGESLLWPINRAQALSLLAHFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLL 282

Query: 255 SPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           SPR+        +     +   +    ++ + L WRE+ R +          +  +    
Sbjct: 283 SPREVIEATISAYRAAQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQR 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           +  G T    +  A+ Q    G+ H+  R++           D    
Sbjct: 343 PLP--------SYFWNGQTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQV 394

Query: 373 EEYFMSQLLDG 383
           + +++   +D 
Sbjct: 395 DAWYLGIYIDA 405


>gi|313677215|ref|YP_004055211.1| deoxyribodipyrimidine photolyase-related protein [Marivirga
           tractuosa DSM 4126]
 gi|312943913|gb|ADR23103.1| deoxyribodipyrimidine photolyase-related protein [Marivirga
           tractuosa DSM 4126]
          Length = 511

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 140/394 (35%), Gaps = 57/394 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW---LDSYCLQQRVTKLFYNRQYE-INE 116
            ++++   +  L +KG  F Y + ++ D+       +     Q  +       +Y   +E
Sbjct: 51  FFSAMRAFKDDLEEKGHNFFYLKINDSDNEQSLTTNIKKLIEQNEIEHF----EYLLPDE 106

Query: 117 VRRDKLLEKRLQH-RVICKSFD-DSVLLPPGSILNH-ALQMYKVYTPFRKALIQNLV--- 170
            R D+ L+   +   +   S + +  L     I +    +   +   F + + ++     
Sbjct: 107 YRLDQQLKNLCEEISISTNSVETEHFLTERDDIADFFKGKKQFLMENFYRKMRKDHDILM 166

Query: 171 ----------------------QADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-QAIDPM 207
                                 +  +         +   ++              A +  
Sbjct: 167 EGTEPVGGKWNFDHDNRNKYKGEVPIPPAYSYKNDVKAVISDIEKAGIKTIGTVDAENFH 226

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRL 263
           +PI  + AL   R FC+E + Y+   +D    +      S++S  L+  ++SP++  +++
Sbjct: 227 WPIDRKQALQFARYFCRELLPYFGTYQDAMHSEEQFLFHSRISFALNSKLISPKELVDKI 286

Query: 264 KEEFVDLLIKPK-SGAFSWLNELI-WREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNKDS 320
            E + +   K K +    ++ ++I WRE+ R +  A  P       F           D 
Sbjct: 287 IEAWEENQDKIKIAQVEGYIRQVIGWREYMRGIYWAKMPGYAEMNFF---------EHDR 337

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
            L   +  G T    ++ +++Q  T  + H+  R++         + D    +++++   
Sbjct: 338 KLPDFYWTGKTKMKCMEKSIKQSLTEAYAHHIQRLMVTGNFALLNMTDPDEVDQWYLGIY 397

Query: 381 LDG----DLASNNGGWQWAASTGNDSVPYFRIFN 410
           +D     ++ +  G  Q+A      S PY    N
Sbjct: 398 IDAIEWVEITNTRGMSQFADGGIVGSKPYLSSAN 431


>gi|330897754|gb|EGH29173.1| deoxyribodipyrimidine photolyase-like protein protein [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 519

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 98/293 (33%), Gaps = 35/293 (11%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGPVTPSNIPRFFDYPFQAI 204
           +LN           F     + L +      P    A  +T  V      RF  +     
Sbjct: 171 LLNGDGTPVGGAWNFDAENRKALPKGMAAPYPLRFSADTITRQVLTLVGERFASHYGSLD 230

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCW 260
           +  +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L  RQ  
Sbjct: 231 NFDYPVTHADAQALWEYFLDYGLAGFGDYQDAMATDEPFLFHARISAALNIGLLDLRQVC 290

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNK 318
           + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F           
Sbjct: 291 SDVESAYWSGRV-GLNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNLFG---------N 340

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIGEEYFM 377
              L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I E Y  
Sbjct: 341 SRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPEQICEWYLA 400

Query: 378 SQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
             +   D     +  G    A      S PY                G +I+ 
Sbjct: 401 IYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 440


>gi|330879845|gb|EGH13994.1| hypothetical protein PSYMP_26306 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 512

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/425 (15%), Positives = 134/425 (31%), Gaps = 73/425 (17%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQR 102
           E+        ++   I++++    +SL ++G+  QY    +          L  +     
Sbjct: 39  EEASHVPHHPQKIALIFSAMRHFAESLRERGVGVQYVTLDDPQNTGSVPGELRRWQALLN 98

Query: 103 VTKLFYNRQYEINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGS--------------- 146
             +L             D  LE+ ++   +  + + D+  L                   
Sbjct: 99  AEQLHITE-------CGDWRLEQSIKEGGLSIQWYADTRFLCSRDGFAAWAHGKKQLRME 151

Query: 147 ------------ILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSN 192
                       +LN           F     + L +      P+   A  +T  V    
Sbjct: 152 FFYREMRRKSRLLLNGDGTPVGGAWNFDAENRKALPKGVAAPYPMRFSADAITRDVLALV 211

Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPY 248
             RF ++        +P+   +A  +   F    +  + + +D  A        +++S  
Sbjct: 212 AERFANHYGSLDTFDYPVTHADAQALWEYFLDFGLAGFGDYQDAMANDEPFLFHARISAA 271

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKP 306
           L+IG+L  RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  
Sbjct: 272 LNIGLLDLRQICSDVESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNL 330

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDL 365
           F              L + +  G T    +  A+ Q     + H+  R++   +F +   
Sbjct: 331 FG---------NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAG 381

Query: 366 LVDWRIGEEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           +V  +I E Y    +   D     +  G    A      S PY                G
Sbjct: 382 IVPEQICEWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASG 428

Query: 423 TFIRH 427
            +I+ 
Sbjct: 429 QYIKR 433


>gi|298486303|ref|ZP_07004366.1| Deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298159310|gb|EFI00368.1| Deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 461

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 136/425 (32%), Gaps = 77/425 (18%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL---------QVQKSLSQKGI 77
             A      +V  V +  P+         R+   +  +           ++++S+   G+
Sbjct: 11  AEALRERGIRVQYVMLDDPQNTGSVPGELRRWQALLQAKELHVTECGDWRLEQSIKDSGL 70

Query: 78  VFQYHQCSNFDDSIEWLDSY---CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134
             Q++  + F  S E   S+     Q R+   +        E+RR   L           
Sbjct: 71  PIQWYADTRFLCSREEFLSWAQGKKQLRMEFFY-------REMRRKSRL----------- 112

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSN 192
                       +LN           F     + L +      P+   A  +T  V    
Sbjct: 113 ------------LLNGDGTPVGGAWNFDAENRKALPKGVAAPYPMRFSADGITRDVLTLV 160

Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPY 248
             RF  +     D  +P+   +A  +   F    +  + + +D  A        +++S  
Sbjct: 161 AERFASHYGSLDDFDYPVTHVDAQALWDYFLDFGLSGFGDYQDAMATDEPFLFHARISAA 220

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKP 306
           L+IG+L  RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  
Sbjct: 221 LNIGLLDLRQICSDVESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPEYADGNL 279

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDL 365
           F              L + +  G T    +  A+ Q     + H+  R++   +F +   
Sbjct: 280 FG---------NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAG 330

Query: 366 LVDWRIGEEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           +V  +I E Y    +   D     +  G    A      S PY                G
Sbjct: 331 IVPSQICEWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASG 377

Query: 423 TFIRH 427
            +I+ 
Sbjct: 378 QYIKR 382


>gi|66045029|ref|YP_234870.1| deoxyribodipyrimidine photolyase-like protein protein [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255736|gb|AAY36832.1| Deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           syringae pv. syringae B728a]
          Length = 519

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 132/418 (31%), Gaps = 59/418 (14%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQR 102
           E+        ++   I++++    ++L ++G+  QY    +          L  +    R
Sbjct: 46  EEASHVPHHPQKIVLIFSAMRHFAEALRERGVRVQYVMLDDPQNTGSVPGELQRWQALLR 105

Query: 103 VTKLF---------------------YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141
             +L                      ++        R +       + ++  + F   + 
Sbjct: 106 AEELHITECGDWRLEQSIKDCGLPIQWHADTRFLCSRDEFSSWAHGKKQLRMEFFYREMR 165

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGPVTPSNIPRFFDY 199
                +LN           F     + L +      P    A  +T  V      RF  +
Sbjct: 166 RKSRLLLNGDGTPVGGAWNFDAENRKALPKGVAAPYPLRFSADTITRQVLKLVGERFASH 225

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLS 255
                +  +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L 
Sbjct: 226 YGSLDNFDYPVTHADAQALWEYFLDYGLAGFGDYQDAMATDEPFLFHARISAALNIGLLD 285

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEK 313
            RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F      
Sbjct: 286 LRQVCSDVESAYWAGRV-GLNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNLFG----- 339

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIG 372
                   L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I 
Sbjct: 340 ----NSRPLPEFYWTGETQMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPEQIC 395

Query: 373 EEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           E Y    +   D     +  G    A      S PY                G +I+ 
Sbjct: 396 EWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 440


>gi|21218741|ref|NP_624520.1| hypothetical protein SCO0184 [Streptomyces coelicolor A3(2)]
 gi|5748646|emb|CAB53151.1| conserved hypothetical protein SCJ1.33 [Streptomyces coelicolor
           A3(2)]
          Length = 604

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 78/211 (36%), Gaps = 21/211 (9%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLSPRQCWNR 262
           +FP      L  LR+F + ++  +    D       +   S LS  L++G L P +C  R
Sbjct: 216 LFPATRTEGLRALRRFVEHRLATFGPHEDAMLAADPVMSHSLLSSTLNLGPLDPVECVER 275

Query: 263 LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIE--WNK- 318
            +  + +    P +    ++ ++  WRE+   L  ++         +  T  +   WN+ 
Sbjct: 276 AERAWREGRA-PLNSVEGFVRQIAGWREYVWQLYWYFGEGYRRSNALGHTAPLPDWWNRL 334

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D+  ++A     T          Q+   GW H+  R++           D      +F  
Sbjct: 335 DADAVRANCL-RTVLA-------QVRDTGWTHHIPRLMVLGSHALQRGWDPAAVTNWFHR 386

Query: 379 QLLDGD----LASNNGGWQWAASTGNDSVPY 405
             +DG     L +  G  Q+A      + PY
Sbjct: 387 CFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 417


>gi|227812375|ref|YP_002812385.1| hypothetical protein VCM66_A0768 [Vibrio cholerae M66-2]
 gi|298499599|ref|ZP_07009405.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|227011517|gb|ACP07728.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|297541580|gb|EFH77631.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 516

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 78/251 (31%), Gaps = 20/251 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPF 201
           G ++    +       F       L   DL  LP P      +          R      
Sbjct: 163 GYLMTADGKPEGGQWNFDADNRNKLKAPDLLQLPTPLCFDNPVASIKARLERHRIPSIGQ 222

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVL 254
                ++PI    AL +L  FC+  +  +   +D    Q         S+LS  L+  +L
Sbjct: 223 IGESLLWPINRAQALSLLAHFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLL 282

Query: 255 SPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           SPR+        +     +   +    ++ + L WRE+ R +          +  +    
Sbjct: 283 SPREVIEATISAYRAAQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQR 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           +  G T    +  A+ Q    G+ H+  R++           D    
Sbjct: 343 PLP--------SYFWNGQTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQV 394

Query: 373 EEYFMSQLLDG 383
           + +++   +D 
Sbjct: 395 DAWYLGIYIDA 405


>gi|26989451|ref|NP_744876.1| hypothetical protein PP_2732 [Pseudomonas putida KT2440]
 gi|24984318|gb|AAN68340.1|AE016467_10 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 508

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/385 (15%), Positives = 125/385 (32%), Gaps = 50/385 (12%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
            I++++    ++L ++G    Y +     N    +  L  +      T +      E  E
Sbjct: 49  LIFSAMRHFAQALRERGWQVHYVELDAEGNSGSIVGELHRWQQALGATHI---HLTECGE 105

Query: 117 VRRDKLLEKRLQHRVICKS---FDDSVLLPPGSILNHALQMYKVYTPFRKAL-------- 165
            R ++ L       V  +              +     L+M   Y   RK          
Sbjct: 106 WRLEQALRDAALPLVWFRDTRFLCSREAFGRWATERRQLRMEHFYRGMRKRTGLLMEPDG 165

Query: 166 -----IQNLVQADLRSLPVPAI----------RLTGPVTPSNIPRFFDYPFQAIDPMFPI 210
                  N    + + LP               +T  V      RF D+        +P+
Sbjct: 166 SPAGGAWNFDGDNRKPLPRQLRGPFAAHFAQDDITAAVVALVRQRFSDHYGGVDGFDYPV 225

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEE 266
               A  + + F    +  + + +D  A        +++S  L+IG+L  R+  + + + 
Sbjct: 226 THAEAQQLWQHFLDFGLAAFGDYQDAMAEGEPYLFHARISAALNIGLLDVRRLCDDVDKA 285

Query: 267 FVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQA 325
           + +  + P + A  ++ +LI WRE+ R +         G   +     +         + 
Sbjct: 286 WREGRV-PLNAAEGFIRQLIGWREYVRGIYWQRMPAYAGLNHLNNHRALP--------EF 336

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD- 384
           +  G T    +  A+ Q   +G+ H+  R++          +      E++++  +D   
Sbjct: 337 YWTGRTRMRCMAQAIGQTLRLGYAHHIQRLMVTGNFALLAGIVPTAICEWYLAVYMDAFE 396

Query: 385 ---LASNNGGWQWAASTGNDSVPYF 406
              L +  G    A      S PY 
Sbjct: 397 WVELPNTLGMVMHADGGYLGSKPYC 421


>gi|330963284|gb|EGH63544.1| hypothetical protein PSYAC_01280 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 469

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 132/419 (31%), Gaps = 73/419 (17%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFY 108
               ++   I++++    +SL ++G+  QY    +          L  +       +L  
Sbjct: 2   PHHPQKIALIFSAMRHFAESLRERGVGVQYVTLDDPQNTGSVPGELRRWQALLSAEQLHI 61

Query: 109 NRQYEINEVRRDKLLEKRLQHRVI-CKSFDDSVLLPPGS--------------------- 146
                      D  LE+ ++H  +  + + D+  L                         
Sbjct: 62  TE-------CGDWRLEQSIKHGGLSIQWYADTRFLCSRDGFAAWAHGKKQLRMEFFYREM 114

Query: 147 ------ILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSNIPRFFD 198
                 +LN           F     + L +      P+   A  +T  V      RF  
Sbjct: 115 RRKSRLLLNGDGTPVGGAWNFDAENRKALPKGVAAPYPMRFSADAITRDVLALVAERFAS 174

Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVL 254
           +        +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L
Sbjct: 175 HYGSLETFDYPVTHADAQALWEYFLDFGLAGFGDYQDAMATDEPFLFHARISAALNIGLL 234

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTE 312
             RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F     
Sbjct: 235 DLRQICSDVESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNLFG---- 289

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRI 371
                    L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I
Sbjct: 290 -----NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPEQI 344

Query: 372 GEEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            E Y    +   D     +  G    A      S PY                G +I+ 
Sbjct: 345 CEWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 390


>gi|78046941|ref|YP_363116.1| hypothetical protein XCV1385 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035371|emb|CAJ23016.1| conserved hypothetical protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 546

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 120/395 (30%), Gaps = 56/395 (14%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
           A++   I+A++      L + G   +Y      SN       L++     R   L Y   
Sbjct: 81  AQKVLAIFAAMRAFAAGLRRAGHRVRYVTIDNASNRQSIPHNLEALMAHYRAGHLEYQ-- 138

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSI--LNHALQMYKVYTPFRKALIQ 167
              +E R D+ L+     +            L     +     A   +++   +R+   Q
Sbjct: 139 -APDEWRLDEALQHWSAAQPFATRMLGSEHFLTARSEVAGCFRAGSPWRMEVFYRRMRRQ 197

Query: 168 NLVQADLRSLP----------VPAIRLTGPVTPSNIPRFFDYP-------------FQAI 204
           + +  D    P            A     P  P +     D+              F A 
Sbjct: 198 HGILLDAAGEPEGGRWNFDHDNRAPWPGDPPAPQDWRTTHDHSALWRTIEAAGVRSFGAP 257

Query: 205 DPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPR 257
           +     +P+    AL  L  F    +  +    D  + +      S LS  L++ +L PR
Sbjct: 258 NAHALPWPLDRDEALQHLDAFIAHALPNFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPR 317

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIE 315
           +   R +  +      P +    ++ + L WRE+ R +     P                
Sbjct: 318 EVIARAEAAWRQ-GHAPLAAVEGFIRQILGWREYVRGVYWSQMPGYADSNHLDQHAALPH 376

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  D         G  G   +  A+         H+  R++          +D +    +
Sbjct: 377 WFWD---------GQIGMRCLADAIGNSLANAHAHHIQRLMVIGNFALLAGLDPQALHRW 427

Query: 376 FMSQLLDGD----LASNNGGWQWAASTGNDSVPYF 406
           ++   +D      L +  G  Q+A      S PY 
Sbjct: 428 YLGVYIDAFEWVELPNTVGMSQFADGGLLGSKPYI 462


>gi|289679482|ref|ZP_06500372.1| deoxyribodipyrimidine photolyase-like protein protein [Pseudomonas
           syringae pv. syringae FF5]
          Length = 424

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/395 (15%), Positives = 128/395 (32%), Gaps = 46/395 (11%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQR 102
           E+        ++   I++++    ++L ++G+  QY    +          L  +    R
Sbjct: 39  EEASHVPHHPQKIVLIFSAMRHFAEALRERGVRVQYVMLDDPQNTGSVPGELQRWQALLR 98

Query: 103 VTKLF---------------------YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141
             +L                      ++        R +     + + ++  + F   + 
Sbjct: 99  AEELHVTECGDWRLEQSIKDCGLPIQWHADTRFLCSRDEFSSWAQGKKQLRMEFFYREMR 158

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGPVTPSNIPRFFDY 199
                +LN           F     + L +      P    A  +T  V      RF  +
Sbjct: 159 RKSRLLLNGDGTPVGGAWNFDAENRKALPKGMAAPYPLRFSADTITRQVLTLVGERFASH 218

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLS 255
                +  +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L 
Sbjct: 219 YGSLDNFDYPVTHADAQALWEYFLDYGLAGFGDYQDAMATDEPFLFHARISAALNIGLLD 278

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEK 313
            RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F      
Sbjct: 279 LRQVCSDVESAYWSGRV-GLNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNLFG----- 332

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIG 372
                   L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I 
Sbjct: 333 ----NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPEQIC 388

Query: 373 EEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVP 404
           E Y    +   D     +  G    A      S P
Sbjct: 389 EWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKP 423


>gi|311978263|ref|YP_003987466.1| putative deoxyribodipyrimidine photolyase-related protein
           [Acanthamoeba polyphaga mimivirus]
 gi|311788811|gb|ADQ12922.1| putative deoxyribodipyrimidine photolyase-related protein
           [Acanthamoeba polyphaga mimivirus]
          Length = 393

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 206 PMFPIGEQNALHILRKFCKEKVYY---YVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWN 261
            ++PI   + +     F + K+ Y   Y +  D        S +SP L+ G+++PR   +
Sbjct: 239 QLYPINHADIISHFDYFVENKLPYFGMYEDAIDFDDPYLFHSVISPQLNSGLITPRYVLD 298

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
           ++ +++             ++ +L+WRE+ R ++  Y    M K +     +I       
Sbjct: 299 KVIDKYNKSNTDLLYEVEGYIRQLVWREYSR-MLYRYIRKDMMKNYFGNKNRIS------ 351

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIG 347
             + W  G TG   +D A+      G
Sbjct: 352 --EIWYTGNTGIEPVDLAISSAFQYG 375


>gi|325926985|ref|ZP_08188260.1| deoxyribodipyrimidine photolyase-related protein [Xanthomonas
           perforans 91-118]
 gi|325542644|gb|EGD14111.1| deoxyribodipyrimidine photolyase-related protein [Xanthomonas
           perforans 91-118]
          Length = 546

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 120/395 (30%), Gaps = 56/395 (14%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
           A++   I+A++      L + G   +Y      SN       L++     R   L Y   
Sbjct: 81  AQKVLAIFAAMRAFAAGLRRAGHRVRYVTIDNASNRQSIPHNLEALMAYYRAGHLEYQ-- 138

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSI--LNHALQMYKVYTPFRKALIQ 167
              +E R D+ L+     +            L     +     A   +++   +R+   Q
Sbjct: 139 -APDEWRLDEALQHWSAAQPFATRMVGSEHFLTARSEVAGCFRAGSPWRMEVFYRRMRRQ 197

Query: 168 NLVQADLRSLP----------VPAIRLTGPVTPSNIPRFFDYP-------------FQAI 204
           + +  D    P            A     P  P +     D+              F A 
Sbjct: 198 HRILLDAAGEPEGGRWNFDRDNRAPWPGDPPAPQDWRTTHDHSALWRTIEAAGVRSFGAP 257

Query: 205 DPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPR 257
           +     +P+    AL  L  F    +  +    D  + +      S LS  L++ +L PR
Sbjct: 258 NAHALPWPLDRDEALQHLDAFIAHALPNFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPR 317

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIE 315
           +   R +  +      P +    ++ + L WRE+ R +     P                
Sbjct: 318 EVIARAEAAWRQ-GHAPLAAVEGFIRQILGWREYVRGVYWSQMPGYADSNHLDQHAALPH 376

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  D         G  G   +  A+         H+  R++          +D +    +
Sbjct: 377 WFWD---------GQIGMRCLADAIGNSLANAHAHHIQRLMVIGNFALLAGLDPQALHRW 427

Query: 376 FMSQLLDGD----LASNNGGWQWAASTGNDSVPYF 406
           ++   +D      L +  G  Q+A      S PY 
Sbjct: 428 YLGVYIDAFEWVELPNTVGMSQFADGGLLGSKPYI 462


>gi|15890228|ref|NP_355900.1| hypothetical protein Atu4765 [Agrobacterium tumefaciens str. C58]
 gi|15158416|gb|AAK88685.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 507

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/416 (13%), Positives = 127/416 (30%), Gaps = 57/416 (13%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
           G   ++  FI++++    + L  +G   +Y +  + D++  +         +  L  +R 
Sbjct: 42  GHHKKKIAFIFSAMRHFAEELRGEGYRVRYTRIDDADNAGSFTGEVKRA--IDDLTPSRI 99

Query: 112 --YEINEVRRDKLL----------------EKRLQHRVICKSFDD-----SVLLPPGSIL 148
              E  E R    +                 + L      +++       ++      + 
Sbjct: 100 CVTEPGEWRVRSEMDGFAGAFGIQVDIRSDRRFLSSHGEFRNWAAGRKSLTMEYFYREMR 159

Query: 149 NHALQMYKVYTPFRKALI-----QNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYP 200
                +     P           +   + DL     P     ++T  V  +    F D  
Sbjct: 160 RKTGLLMNGEQPVGGRWNFDAENRQPARPDLLRPKHPVFAPDKITKEVIDTVERLFPDNF 219

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSP 256
            +  +  F +   +A   L  F  + +  +   +D           S LS Y++ G+L  
Sbjct: 220 GKLENFGFAVTRTDAERALSAFIDDFLCNFGATQDAMLQDDPNLNHSLLSFYINCGLLDA 279

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
                  +  + +    P +    ++ ++I WRE+ R +        +   F        
Sbjct: 280 LDVCKAAERAYHE-GGAPLNAVEGFIRQIIGWREYMRGIYWLAGPDYVDSNFF------- 331

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
              D  L   +  G T    +   + +     + H+  R++          +D +    +
Sbjct: 332 -ENDRSLPVFYWTGKTHMNCMAKVITETIENAYAHHIQRLMITGNFALLAGIDPKAVHRW 390

Query: 376 FMSQLLDGD----LASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRFDPQ 421
           ++    D      L +  G  Q+A      + P      Y    +      R+DP+
Sbjct: 391 YLEVYADAYEWVELPNVIGMSQFADGGFLGTKPYAASGNYINRMSDYCDTCRYDPK 446


>gi|86147738|ref|ZP_01066046.1| hypothetical protein MED222_15267 [Vibrio sp. MED222]
 gi|85834519|gb|EAQ52669.1| hypothetical protein MED222_15267 [Vibrio sp. MED222]
          Length = 519

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/399 (15%), Positives = 129/399 (32%), Gaps = 58/399 (14%)

Query: 31  HNSDAKVIAVFIATPEQWRQHGISARQ-SHFIYASLLQVQKSLSQKG---IVFQYHQCSN 86
              D +VI + IA  +Q   +  S  Q     ++++      L Q+G   +       + 
Sbjct: 22  QQVDDEVIYI-IAELKQETDYVASHIQKVAAFFSAMGYFADELKQQGHQVLHLTLDYTTQ 80

Query: 87  FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146
           F++    L  Y  +    K  Y R  E   + +   L+     +  C S  +  L P   
Sbjct: 81  FENLDALLQHYVHEFGAEKFEYQRPDEYRLLEQMNKLKLTNATKGCCDS--EHFLFPFEE 138

Query: 147 I----LNHALQMYKVYTP---------------------FRKALIQNLVQADLRSLPVP- 180
           I          M + +                       +  +  + L + D+ SLP P 
Sbjct: 139 IEQQFPKDKHIMMEHFYRRMRKHFDILLEDGKPVGGKWNYDASNRKKLKKQDIESLPQPL 198

Query: 181 --AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             A  ++  +      +           ++P+    +L +L  FC+  +  + + +D   
Sbjct: 199 MFANDISAILERIERHQVQTIGEVGDQLLWPVNRAQSLSLLAHFCQVCLPLFGQFQDAMT 258

Query: 239 IQ-------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK-----SGAFSWLNE-L 285
            +         S+LS  L+  +LSP++  +     +             +    ++ + L
Sbjct: 259 TEHDSKWSLYHSRLSFSLNSKLLSPQEVIDAALSAYQASSKLNAPTIDIAQIEGFVRQIL 318

Query: 286 IWREFYRH-LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
            WRE+ R    A  P+      +           D  L   +  G T    +  A+ Q  
Sbjct: 319 GWREYIRGVYWANMPAYANKNHYAA---------DRQLPHYFWDGQTKMNCMKHAIDQSL 369

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
              + H+  R++          +     + +++   +D 
Sbjct: 370 EFAYAHHIQRLMITGNFCLITGIAPDQVDSWYLGIYVDA 408


>gi|315126155|ref|YP_004068158.1| hypothetical protein PSM_A1064 [Pseudoalteromonas sp. SM9913]
 gi|315014669|gb|ADT68007.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 517

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 119/378 (31%), Gaps = 51/378 (13%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD---SIEWLDSYCLQQR 102
            Q+ +H +  ++    + ++  +  +L   G    +    +  D       L     Q  
Sbjct: 40  AQYVKHHV--QKISAFFKAMENLANALKDAGFNVLHLTLDDTKDDNNLPALLTRLAKQHE 97

Query: 103 VTKLFYNR--QYEINEVRRD-----KLLEKRLQHRVICKSFDD---------SVLLP--- 143
            T + Y    +Y +     D     +L            +F+D          V +    
Sbjct: 98  CTSIEYQYPDEYRLKTQLHDFATNSELAVTACDSEHFLLAFNDIDKRFKKDKHVTMEHFY 157

Query: 144 -----PGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPR 195
                   IL    + +     F         ++DL  +P P +    ++  +   +  +
Sbjct: 158 RAMRKQFDILMDDEKPHGGQWNFDANNRNKFSKSDLADIPKPKLFKNDVSTIIERLDKHK 217

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI-----PAIQ--GTSQLSPY 248
              +        +P   + A+  L  FC   +  + + +D      P       S+LS  
Sbjct: 218 IKYFGQIETQLSWPTTRKQAISALDHFCAHLLPRFGQFQDAMTDQCPDKDTFYHSRLSFA 277

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFY-PSVCMGK 305
           L+  +L PR   +R+ +E+     +   S    ++ + L WRE+ R +     P      
Sbjct: 278 LNAKILHPRYIIDRVVKEYQQRQDEISISQVEGFIRQVLGWREYVRGVYWKNMPDYAYKN 337

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
                           L + +  G T    +  ++ Q     + H+  R++         
Sbjct: 338 QLNATR---------ALPRYFWNGKTKMNCLSHSLTQSLDSAYAHHIQRLMVIGNFCLLT 388

Query: 366 LVDWRIGEEYFMSQLLDG 383
            +     +E+++   +D 
Sbjct: 389 AISPDEVDEWYLGVYIDA 406


>gi|222641972|gb|EEE70104.1| hypothetical protein OsJ_30114 [Oryza sativa Japonica Group]
          Length = 741

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 78/256 (30%), Gaps = 47/256 (18%)

Query: 13  WLRNDLRITDNKALYAA-CHNSDAKVIAVFIAT-----------------PEQWRQH--- 51
           W ++DLR+ D+  L AA        V+ +++                   P   R+    
Sbjct: 49  WFKHDLRVDDHPGLAAAVAAEPRRPVLPLYVFDRRILDDASKWREQLLFSPNFLRRPAPP 108

Query: 52  ------------------GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93
                             G S      +  +L  ++  L  +             ++ + 
Sbjct: 109 LSGMCQIMKVLIGMDEIKGYSDTMLELLLFALEDLKMVLKSQESDLLIG----LGNAEDV 164

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN--HA 151
           +     + +   +F   + E         +E  L +          +++   S+ +  + 
Sbjct: 165 VLKLVNEVQAGLIFTEEEVEYRVRNVLASVESSLSNASFLSGNPPEIVVWSASLYDYKNP 224

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL-TGPVTPSNIPRFFDYPFQAIDPMF-P 209
            ++   +  F K  +         SLP   I + TG +      + F    +  +  + P
Sbjct: 225 RELSTSHNQFLKEKLPMNTPLAAPSLPALNIEIETGSLPTLEELKGFLKESRTSENNWVP 284

Query: 210 IGEQNALHILRKFCKE 225
           +   +A  IL+K   +
Sbjct: 285 LKGTSARSILKKTLSQ 300


>gi|113195453|ref|YP_717590.1| DNA photolyase 2 [Clanis bilineata nucleopolyhedrosis virus]
 gi|94958994|gb|ABF47395.1| DNA photolyase 2 [Clanis bilineata nucleopolyhedrosis virus]
          Length = 372

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 14/155 (9%)

Query: 11  LVWLRNDLRITDNKALYAACH---NSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
           + W+  D R+ DN A+  A          +   F  T         S RQ  F+   L  
Sbjct: 124 VYWMSRDSRVQDNWAMIYAQRLAIERQVPLHVCFCLTSSFLNA---SLRQFDFLLEGLKS 180

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD--KLLEK 125
           VQ+   +  I F     S   D    L+ +     ++ +     +    V RD    ++ 
Sbjct: 181 VQRECHELNIGFHVLDGS--GDLT--LNDWVQTNNISAVVC--DFNPLRVVRDWVATVKS 234

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160
           +L   V     D   ++P              + P
Sbjct: 235 QLAPHVFFAQVDAHNIVPCWQASLKQEVYASTFRP 269


>gi|76802612|ref|YP_327620.1| hypothetical protein NP3956A [Natronomonas pharaonis DSM 2160]
 gi|76558477|emb|CAI50069.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 511

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 125/418 (29%), Gaps = 54/418 (12%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
            L +   ++D +V+   I      R+      +   +++++   +  L + G    Y + 
Sbjct: 15  PLASDARSTDERVLC--IEARAFARRKPYHPHKLTLVFSAMRHFRDRLREAGYTVDYRRV 72

Query: 85  SNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC----------- 133
             F    E LD++        +   R+       R + L       V             
Sbjct: 73  ETF---AEGLDAHFAAHPEDHIVTVRRTAHGATDRLQRLVANRGGTVEFVADPRFHCSRE 129

Query: 134 --------------KSFDDSVLLPPGSILNHALQMYKVY--------TPFRKALIQNLVQ 171
                         +SF   +    G +++    +   +         P  + +     Q
Sbjct: 130 EFDAWADGDPPYRHESFYRHMRRETGYLMDGDEPVGGEWNFDDENREFPGPEYVPPEPPQ 189

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP---MFPIGEQNALHILRKFCKEKVY 228
            +                  +      Y     DP    +P+  + AL  L  F +E++ 
Sbjct: 190 FEPDETTREVREWVDATFGEDGYDDAPYGGAWADPEPFSWPVTREGALQALEAFIEERLP 249

Query: 229 YYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            +   +D           + LS  L++G+LSP +        F +  +   S        
Sbjct: 250 TFGPYQDAMLGDEWAMNHALLSSSLNLGLLSPSEVIEAALAAFEEGSVSIASVEGFLRQV 309

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WREF RH     P +                    L + +  G T    +  A+  + 
Sbjct: 310 LGWREFVRHAYRRTPGMAAANQLGA---------AEPLPEFFWTGDTDMACVADAVDGVR 360

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDS 402
           T G+ H+  R++  S       V+     E+F +  +D              + G D+
Sbjct: 361 TRGYAHHIERLMVLSNFATLYGVEPSRLNEWFHAAFVDAYHWVTTPNVVGMGTFGTDT 418


>gi|254462620|ref|ZP_05076036.1| photolyase [Rhodobacterales bacterium HTCC2083]
 gi|206679209|gb|EDZ43696.1| photolyase [Rhodobacteraceae bacterium HTCC2083]
          Length = 490

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 75/214 (35%), Gaps = 14/214 (6%)

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
            LP     +T  V       F D+  +  +  F      AL  L  F    +  + + +D
Sbjct: 173 PLPFAPDAITKDVLDLVATSFGDHFGKLENFNFATTRAEALQALEHFITHALPRFGDFQD 232

Query: 236 IPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREF 290
               +      + +SPYL++G+L P +     ++ + D    P +    ++ ++I WRE+
Sbjct: 233 AMLSENKFLYHAVISPYLNVGLLGPLEICQAAEQAYKD-GYAPINAVEGFIRQIIGWREY 291

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R +          +  +     +        L    +  T    +  ++ Q     + H
Sbjct: 292 VRGIYFLEGPDYTRRNALGHHRDLP------ALYWGAE--TKMHCLSKSVAQTRDEAYAH 343

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           +  R++          +D     E+++   +D  
Sbjct: 344 HIQRLMVTGNFALLSGIDPEQVHEWYLEVYVDAF 377


>gi|330960206|gb|EGH60466.1| deoxyribodipyrimidine photolyase-like protein protein [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 469

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 130/419 (31%), Gaps = 73/419 (17%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD---SIEWLDSYCLQQRVTKLFY 108
               ++   I++++    ++L ++G+  +Y    + ++       L  +       +L  
Sbjct: 2   PHHPQKIALIFSAMRHFAEALRERGVRVRYVTLDDPENTGSVPGELRRWQALLNADELHV 61

Query: 109 NRQYEINEVRRDKLLEKRLQHRV--ICKSFDDSVLLPPGS-------------------- 146
                      D  LE+ ++     I    D   L                         
Sbjct: 62  TEC-------GDWRLEQSIKDCGLPIHWHVDTRFLCSREEFSSWAHGKKQLRMEFFYREM 114

Query: 147 ------ILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSNIPRFFD 198
                 +LN           F     + L +      P+   A  +T  V      RF  
Sbjct: 115 RRKSRLLLNGDGTPVGGAWNFDAENRKALPKGMAAPYPMRFSADAITRDVLVLVGERFAS 174

Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVL 254
           +        +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L
Sbjct: 175 HYGSLEAFDYPVTHVDAQALWEYFLDFGLAGFGDYQDAMATDEPFLFHARISAALNIGLL 234

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTE 312
             RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F     
Sbjct: 235 DLRQICSDVESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNLFG---- 289

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRI 371
                    L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I
Sbjct: 290 -----NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPEQI 344

Query: 372 GEEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            E Y    +   D     +  G    A      S PY                G +I+ 
Sbjct: 345 CEWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 390


>gi|227553401|ref|ZP_03983450.1| conserved hypothetical protein [Enterococcus faecalis HH22]
 gi|227177452|gb|EEI58424.1| conserved hypothetical protein [Enterococcus faecalis HH22]
          Length = 80

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 11 LVWLRNDLRITDNKALYAACHNSDA-KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQ 69
          ++W R DLR+ DNKAL  A  NS A ++I +F   P+Q+ Q   SA  + F +ASL   +
Sbjct: 4  VIWFRRDLRLQDNKALAHALQNSAADELILLFQMNPQQFIQE--SANHNAF-FASLASFK 60

Query: 70 KSLSQ 74
          + + Q
Sbjct: 61 ERIDQ 65


>gi|225011848|ref|ZP_03702286.1| deoxyribodipyrimidine photolyase-related protein [Flavobacteria
           bacterium MS024-2A]
 gi|225004351|gb|EEG42323.1| deoxyribodipyrimidine photolyase-related protein [Flavobacteria
           bacterium MS024-2A]
          Length = 510

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/408 (14%), Positives = 131/408 (32%), Gaps = 56/408 (13%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRR 119
            + ++ Q +  L Q+G    Y + ++  +S     +      V     +  QY  +E R 
Sbjct: 49  FFNAMRQFKTDLEQRGHRVHYIELNDKTNSQSLTKNLLHLIDVYQARVFEYQY-PDEYRL 107

Query: 120 DKLLEKRLQ------------HRVICKSFDDSVL---------LPPGSILNHALQMYKVY 158
           DK LE   +            H +  ++F  S                I      + +  
Sbjct: 108 DKQLEDFCKTLSIRTNTIDTEHFMTSRTFLSSFFEGKKQLVMEYFYRRIRKDFNLLMEGE 167

Query: 159 TPFRKAL---IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP------FQAIDPMFP 209
            P   A      N  +     +   A R+      S      +          +   ++P
Sbjct: 168 NPLGGAWNFDKNNRNKWKGSPIIPKAYRVDSSNLDSLTTMLREEEVTTLGTIDSTSFLYP 227

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKE 265
              + AL  L  F K  + Y+   +D    +      S+LS  L+  +++P +    + +
Sbjct: 228 ASRKEALLQLEYFNKNLLRYFGFYQDAMHTEEVNLFHSRLSFALNTKMVTPLEVVQSVID 287

Query: 266 EFVDLLIK-PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
                  +   S    ++ ++I WRE+ R +          +    + +K   +  + L 
Sbjct: 288 YHHQNEDEIDISQVEGFVRQIIGWREYMRGIYW--------REMPAYGQKNALDNHNTLP 339

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             +  G T    +  +++      + H+  R++          V     + +++    D 
Sbjct: 340 NFYWTGETNMNCLKQSIKNSLDHAYAHHIQRLMVTGNFALLAQVHPDEVDRWYLGVYADA 399

Query: 384 ----DLASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRFDPQ 421
                L +  G  QWA      + P      Y    +   +G ++D +
Sbjct: 400 VEWVQLPNTRGMSQWADGGIVATKPYVSAAAYIHKMSNYCEGCKYDKK 447


>gi|328470042|gb|EGF40953.1| hypothetical protein VP10329_04567 [Vibrio parahaemolyticus 10329]
          Length = 514

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 112/352 (31%), Gaps = 48/352 (13%)

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++      +       + FDD  + L  Y  +   +K  Y R    +E R  + L K   
Sbjct: 63  KQEEGHHVLHLTLDDTAAFDDLDQVLQHYVREVGASKFEYQR---PDEYRLLEQLTKLKL 119

Query: 129 HRVICKSFDDSVLLPPG--------------------------SILNHALQMYKVYTPFR 162
             V+ +  D    L P                            IL    +       + 
Sbjct: 120 EGVVKRCVDTEHFLLPFAEIEQQFPQGKHVMMEHFYRRMRKRFDILMQDGKPVGEKWNYD 179

Query: 163 KALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
                 L   D+  LP P   ++ +   V      +         D ++P+    +L +L
Sbjct: 180 ANNRNKLKAKDIEQLPKPLMFSLNVDEIVERLTRHKISTIGSLNGDLLWPVNRAQSLSLL 239

Query: 220 RKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
             FC+  + ++   +D    +         S+LS  ++  +L P++  +     +     
Sbjct: 240 AHFCQVCLPHFGRFQDAMTAEHDAKWSLYHSRLSFSMNSKLLHPKEVIDAALSAYQSNKH 299

Query: 273 KPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
              +    ++ + L WREF R +           P  P   ++E ++D         G T
Sbjct: 300 IDIAQVEGFIRQILGWREFIRGVYWA------NMPQYPQKNELEASRDLPDYFWT--GKT 351

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
               +  A+ Q     + H+  R++          ++    + +++   +D 
Sbjct: 352 KMACMRNAIGQSLDYAYAHHIQRLMVTGNFCLLTEMNPDQVDAWYLGIYVDA 403


>gi|330972548|gb|EGH72614.1| deoxyribodipyrimidine photolyase-like protein protein [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 469

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 62/412 (15%), Positives = 130/412 (31%), Gaps = 59/412 (14%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLF- 107
               ++   I++++    ++L ++G+  QY    +          L  +    R  +L  
Sbjct: 2   PHHPQKIVLIFSAMRHFAEALRERGVRVQYVMLDDPQNTGSVPGELQRWQALLRAEELHI 61

Query: 108 --------------------YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSI 147
                               ++        R +       + ++  + F   +      +
Sbjct: 62  TECGDWRLEQSIKDCGLPIQWHADTRFLCSRDEFSSWAHGKKQLRMEFFYREMRRKSRLL 121

Query: 148 LNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGPVTPSNIPRFFDYPFQAID 205
           LN           F     + L +      P    A  +T  V      RF  +     +
Sbjct: 122 LNGDGTPVGGAWNFDAENRKALPKGVAAPYPLRFSADTITRQVLKLVGERFASHYGSLDN 181

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWN 261
             +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L  RQ  +
Sbjct: 182 FDYPVTHADAQALWEYFLDYGLAGFGDYQDAMATDEPFLFHARISAALNIGLLDLRQVCS 241

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKD 319
            ++  +    +   + A  ++ +LI WRE+ R +     P    G  F            
Sbjct: 242 DVESAYWSGRV-GLNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNLFG---------NS 291

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIGEEYFMS 378
             L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I E Y   
Sbjct: 292 RPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPEQICEWYLAI 351

Query: 379 QLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            +   D     +  G    A      S PY                G +I+ 
Sbjct: 352 YMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 390


>gi|90415707|ref|ZP_01223641.1| hypothetical protein GB2207_10326 [marine gamma proteobacterium
           HTCC2207]
 gi|90333030|gb|EAS48200.1| hypothetical protein GB2207_10326 [marine gamma proteobacterium
           HTCC2207]
          Length = 515

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/391 (15%), Positives = 129/391 (32%), Gaps = 51/391 (13%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNR--Q 111
           +    +A++     +LS  G   ++ +  +   F D    + + C +Q + +  Y +  +
Sbjct: 49  KVCAFFAAIESFANALSAAGHQVKHLKLDDTAEFADLNTLIAAICAEQGIEQFEYQQPDE 108

Query: 112 YEINEVRR--DKLLEKRLQHRVICKSFDDSV------------------LLPPGSILNHA 151
           Y + E  +  D  +              D +                  L     IL   
Sbjct: 109 YRLAEQLQNLDLGIPVTCWESEHFLLTHDELASYIKVGKHNRMESFYRKLRKRFDILMDG 168

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            +       F       L  AD++ +P P   A  +   +      +         + ++
Sbjct: 169 AEPLGERWNFDGENRNKLKAADIQMVPQPLMFANPVGSYLERIKKHKIDTLGSGTEELLW 228

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY-------LSIGVLSPRQCWN 261
           P+  Q +L +L  FC+  +  +   +D     G S+ S Y       L+  +L P Q  +
Sbjct: 229 PVNRQQSLQLLDFFCEYCLPNFGRFQDAMTQHGESRWSLYHSRISFALNCKILHPMQVID 288

Query: 262 RLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEKIEWNK 318
              + F +       +    ++ + L WRE+ R       P    G  F    +      
Sbjct: 289 AALKRFSETDSGVDLAQVEGFVRQILGWREYVRAVYWVNMPDYAKGNSFGAERD------ 342

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
              L   +  G T    +  A+ Q     + H+  R++          +D    +++++ 
Sbjct: 343 ---LPDYFWTGETKMACMKQAIDQSLEYAYAHHIQRLMVTGNFAMLAGIDPDQVDQWYLG 399

Query: 379 QLLDG----DLASNNGGWQWAASTGNDSVPY 405
             +D     ++ +  G  Q+A      + PY
Sbjct: 400 IYIDAIEWVEMPNTRGMSQFADGGLIATKPY 430


>gi|163803661|ref|ZP_02197524.1| malate synthase [Vibrio sp. AND4]
 gi|159172533|gb|EDP57395.1| malate synthase [Vibrio sp. AND4]
          Length = 514

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 123/412 (29%), Gaps = 69/412 (16%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W +      DN+ LY                       H I  ++    ++++ Q  +  
Sbjct: 20  WFQR----PDNRVLYLIAELKQESTYV----------AHHI--QKVCAFFSAMEQFARER 63

Query: 73  SQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
             +G   +       ++FD   + L  Y  +   +KL Y R    +E R  + L +    
Sbjct: 64  QSEGHQVLQLTLDDTASFDGLEQVLQHYVSEVGASKLEYQR---PDEYRLLEQLARLKLD 120

Query: 130 RVICKSFDDSVLLPPGS--------------------------ILNHALQMYKVYTPFRK 163
            V+ +  D    L P                            IL    +       +  
Sbjct: 121 GVVMRCVDSEHFLLPFEEIESQFPYGKHIMMEHFYRRMRKRFNILMQDGKPVGGKWNYDA 180

Query: 164 ALIQNLVQADLRSLPVPAIRLTGPVTPSNI---PRFFDYPFQAIDPMFPIGEQNALHILR 220
                L   D+  LP P +  T     S                D ++P+    +L +L 
Sbjct: 181 NNRNKLKAKDIEQLPHPLMFSTNVREISERLVRHNIKTIGNLEGDLLWPVNRAQSLSLLA 240

Query: 221 KFCKEKVYYYVE-------QRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK 273
            FC+  +  +         Q D       S++S  L+  +L P++  +     F      
Sbjct: 241 HFCQVCLPLFGRFQDAMTGQHDAKWSLYHSRISFSLNSKLLHPQEVIDASLAAFHSNPDV 300

Query: 274 PKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
             S    ++ + L WRE+ R    A  P            +         L   +  G T
Sbjct: 301 DISQVEGFIRQILGWREYIRGVYWANMPHYATKNELGAKRK---------LPDFFWNGET 351

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
               +  A+ Q     + H+  R++          +D    +++++   +D 
Sbjct: 352 KMACMRNAIGQSLDYAYAHHIQRLMVTGNFCLLTEIDPDQVDQWYLGIYVDA 403


>gi|218709610|ref|YP_002417231.1| deoxyribodipyrimidine photolyase-like protein [Vibrio splendidus
           LGP32]
 gi|218322629|emb|CAV18795.1| Deoxyribodipyrimidine photolyase-related protein [Vibrio splendidus
           LGP32]
          Length = 523

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 113/363 (31%), Gaps = 56/363 (15%)

Query: 68  VQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE 124
               L ++G   +       + F++  + L  Y  +    K  Y R  E   + +   L+
Sbjct: 59  FADGLKEQGHQVLHLTLDDTTQFENLDKLLKHYVHEFGAEKFEYQRPDEYRLLEQMNKLK 118

Query: 125 KRLQHRVICKSFDDSVLLP-----------------------PGSILNHALQMYKVYTPF 161
                +  C +    +                             IL    +       +
Sbjct: 119 LTNATKGCCDTEHFLLPFEEIEQQFPKDKHIMMEHFYRRMRKRFDILLEDGKPVGGKWNY 178

Query: 162 RKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI 218
                + L + D+ +LP P      +T  +      +           ++P+    +L +
Sbjct: 179 DANNRKKLKKQDIENLPQPLMFTNDITDILQRIERHQVQTIGQVGSQLLWPVKRAQSLSL 238

Query: 219 LRKFCKEKVYYYVEQRDIPAIQGTSQLSPY-------LSIGVLSPRQCWNRLKEEFVDLL 271
           L  FC+  +  + + +D       S+ S Y       L+  +LSP++  +     +    
Sbjct: 239 LAHFCQVCLPLFGQFQDAMTTDHDSKWSLYHSRISFSLNSKLLSPKEVIDAALSAYQASS 298

Query: 272 IKPKSG---------AFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEKIEWNKDS 320
            +  S             ++ + L WRE+ R    A  P+      +         + D+
Sbjct: 299 HRDSSSNKPNIDIAQVEGFVRQILGWREYIRAVYWANMPAYANKNHY---------SADN 349

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
           +L   +  G T    +  A+ Q     + H+  R++          +D    + +++   
Sbjct: 350 NLPHYFWDGQTKMNCMKHAIDQSLEFAYAHHIQRLMITGNFCLITGIDPDQVDNWYLGIY 409

Query: 381 LDG 383
           +D 
Sbjct: 410 VDA 412


>gi|114766746|ref|ZP_01445684.1| deoxyribodipyrimidine photolyase-related protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114541065|gb|EAU44121.1| deoxyribodipyrimidine photolyase-related protein [Roseovarius sp.
           HTCC2601]
          Length = 510

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/384 (15%), Positives = 132/384 (34%), Gaps = 49/384 (12%)

Query: 37  VIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI---EW 93
           V+ V +     + +H    ++   I +++    + L +KG+   Y +  + D++    + 
Sbjct: 30  VLMVEVGDETSYVRHH--PQKIALILSAMRHFAEELREKGVTVDYVKLDDTDNTHSFSDE 87

Query: 94  LDSYCLQQRVTKLFYNR--QYEINEVRRDKL------LEKRLQHRVICKSFDDSVLLPPG 145
           L     + +  ++      ++ + E+ RD        +E R   R  C   D + L+   
Sbjct: 88  LARAVKRHKPKRIVATEPGEWRVWEMMRDWESDMDLPVEIRADDRFYCSRDDFAKLVEDN 147

Query: 146 ----------SILNHALQMYKVYTPFRKALIQNLVQADLRSLP----------VPAIRLT 185
                      +      + +   P   A   N  + + +SLP               +T
Sbjct: 148 KTGRMEYFYREMRRRTGLLMEEGEPAGGAW--NFDEENRKSLPKGLETPHRMRFHPDAIT 205

Query: 186 GPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP--AIQGTS 243
             V      RF ++        + +  + AL  LR F K+ +  + + +D          
Sbjct: 206 EEVLELVAARFDNHFGDLEGFGWAVTREEALRALRHFLKDCLPTFGDYQDAMKTGEDYLF 265

Query: 244 Q--LSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPS 300
              +SPYL+IG+L+  +   +  + + D    P +    ++ + L WREF R +      
Sbjct: 266 HGLISPYLNIGLLTAHEVCEKAAQAYAD-GEAPLNAVEGFVRQILGWREFVRGIYWTEMP 324

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
             +   F+     +           +    T    +   +       + H+  R++    
Sbjct: 325 DYVESNFLNAKRDLP--------AMYWGAETDMRCMSECIGATRRNAYAHHIQRLMVTGN 376

Query: 361 LVKDLLVDWRIGEEYFMSQLLDGD 384
                 V+ R  E++++    D  
Sbjct: 377 FALLAGVEPRQIEQWYLEVYADAF 400


>gi|302520313|ref|ZP_07272655.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB78]
 gi|302429208|gb|EFL01024.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB78]
          Length = 504

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 75/208 (36%), Gaps = 15/208 (7%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQ---GTSQLSPYLSIGVLSPRQCWNR 262
           +FP   + A   LR+F   ++  +    D + A       S LS  L++G+L P +C   
Sbjct: 222 LFPATRREARSALRRFVAHRLAGFGPYEDAMLAADPVLSHSLLSAPLNLGLLDPAECAEL 281

Query: 263 LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            +  + +    P +    ++ ++  WRE+   L   +     G   +  T  +       
Sbjct: 282 AERAYSE-GEAPLNSVEGFVRQVAGWREYVWQLYWHFGEEYRGLNALRHTAPLP-----E 335

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
              +   G      +   + Q+   GW H+  R++           D     ++F    +
Sbjct: 336 WFLSLDAGAVTANCLSTVLAQVRDTGWTHHIPRLMILGSRALQDGWDPAAVTDWFHRCFV 395

Query: 382 DGD----LASNNGGWQWAASTGNDSVPY 405
           DG     L +  G  Q+A      + PY
Sbjct: 396 DGYDWVMLPNVLGMSQYADGGRMTTKPY 423


>gi|289662808|ref|ZP_06484389.1| hypothetical protein XcampvN_06883 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 530

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 119/389 (30%), Gaps = 56/389 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           I+A++      L Q G   +Y      SN       LD+     R   L Y      +E 
Sbjct: 71  IFAAMRAFAAGLRQAGHRVRYVTIDNASNRQSIPHNLDALMAHYRAGHLEYQ---APDEW 127

Query: 118 RRDKLLEKRLQHRVICKSFDD--SVLLPPGSI--LNHALQMYKVYTPFRKALIQNLVQAD 173
           R D+ L++    ++      D    L     +     A   +++   +R+   Q+ +  D
Sbjct: 128 RLDEALQQWSAGQLFATRMVDSEHFLTARNEVAACFRAGSAWRMEAFYRRMRRQHRILLD 187

Query: 174 LRSLP----------VPAIRLTGPVTPSNIPRFFDYPF----------------QAIDPM 207
               P            A     P  P +     D+                   A    
Sbjct: 188 AVGEPEGGRWNFDHDNRAPWPGDPPAPKDWRATHDHSALWRTIEAAGVRSFGAPNAQALP 247

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           +P+  + AL  L  F    +  +    D  + +      S LS  L++ +L PR+   R 
Sbjct: 248 WPLDREEALQHLDAFIAHALPDFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPREVIARA 307

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSH 321
           +  +      P +    ++ + L WRE+ R +     P                W  D  
Sbjct: 308 EAAWRQ-GHAPLASVEGFIRQILGWREYVRGVYWSQMPGYAQLNRLDQHAPLPHWFWD-- 364

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
                  G  G   +  A+         H+  R++          +D +    +++   +
Sbjct: 365 -------GQIGMRCLADAVGNSLASAHAHHIQRLMVIGNFALLAGLDPQALHRWYLGVYI 417

Query: 382 DGD----LASNNGGWQWAASTGNDSVPYF 406
           D      L +  G  Q+A      S PY 
Sbjct: 418 DAFEWVELPNTVGMSQFADGGLLGSKPYI 446


>gi|330952836|gb|EGH53096.1| deoxyribodipyrimidine photolyase-like protein protein [Pseudomonas
           syringae Cit 7]
          Length = 512

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/418 (15%), Positives = 132/418 (31%), Gaps = 59/418 (14%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQR 102
           E+        ++   I++++    ++L ++G+  QY    +          L  +    R
Sbjct: 39  EEASHVPHHPQKIVLIFSAMRHFAEALRERGVRVQYVMLDDPQNTGSVPGELQRWQALLR 98

Query: 103 VTKLF---------------------YNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141
             KL                      ++        R +       + ++  + F   V 
Sbjct: 99  AEKLHITECGDWRLEQSIKDCGLPIQWHADTRFLCSRDEFSSWAHGKKQLRMEFFYREVR 158

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGPVTPSNIPRFFDY 199
                +LN           F     + L +      P    A  +T  +      RF  +
Sbjct: 159 RKSRLLLNGDGTPVGGAWNFDAENRKALPKGVAAPYPLRFSADTITCQILELVGGRFASH 218

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLS 255
                D  +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L 
Sbjct: 219 YGSLDDFDYPVTHVDAQALWEYFLDYGLAGFGDYQDAMATGEPFLFHARISAALNIGLLD 278

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEK 313
            RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F      
Sbjct: 279 LRQVCSDVESAYWSGRV-GLNAAEGFIRQLIGWREYVRGVYWLKMPDYAGGNLFG----- 332

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIG 372
                   L + +  G T    +  A+ Q     + H+  R++   +F +   ++  +I 
Sbjct: 333 ----NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGILPEQIC 388

Query: 373 EEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           E Y    +   D     +  G    A      S PY                G +I+ 
Sbjct: 389 EWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 433


>gi|323493059|ref|ZP_08098193.1| hypothetical protein VIBR0546_10359 [Vibrio brasiliensis LMG 20546]
 gi|323312707|gb|EGA65837.1| hypothetical protein VIBR0546_10359 [Vibrio brasiliensis LMG 20546]
          Length = 514

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 106/345 (30%), Gaps = 50/345 (14%)

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
           +         FDD  + L  Y  +   +K  Y R    +E R  + L       V+ +  
Sbjct: 71  LHLTLDDTQAFDDLEQLLQHYVAEVGASKFEYQR---PDEYRLLQQLANLKLKGVVTRCV 127

Query: 137 DDSVLLPPGS--------------------------ILNHALQMYKVYTPFRKALIQNLV 170
           D    L P                            IL    +       +       L 
Sbjct: 128 DTEHFLLPFEEIEAQFTPGKHIMMEHFYRRMRKRFDILMQDGKPEGGKWNYDANNRNKLK 187

Query: 171 QADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
             D+ +LP P   +  ++  V   +            + ++P+    +L +L  FC+  +
Sbjct: 188 AKDIENLPQPLMFSTDVSAIVDRLSRQGIPTIGHLKGELLWPVNRAQSLSLLAHFCRVCL 247

Query: 228 YYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
             +   +D    +         S+LS  L+  +L PR+      + F        S    
Sbjct: 248 PLFGRFQDAMTGEHRVKWSLYHSRLSFSLNSKLLHPREVIEASLKAFQSNPDIEISQVEG 307

Query: 281 WLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
           ++ + L WRE+ R    A  P            +         L + +  G T    +  
Sbjct: 308 FIRQILGWREYIRGVYWANMPQYSDKNELGARRK---------LPEFFWTGETKMACMRH 358

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           A+ Q     + H+  R++          +D    +E+++   +D 
Sbjct: 359 AIGQSLDYAYAHHIQRLMVTGNFCLLSEIDPDQVDEWYLGIYVDA 403


>gi|254786133|ref|YP_003073562.1| deoxyribodipyrimidine photolyase-related protein [Teredinibacter
           turnerae T7901]
 gi|237685922|gb|ACR13186.1| deoxyribodipyrimidine photolyase-related protein [Teredinibacter
           turnerae T7901]
          Length = 507

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/379 (14%), Positives = 117/379 (30%), Gaps = 41/379 (10%)

Query: 36  KVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD---SIE 92
           +V+   +     + +H     +  F+++++      L++ G+   Y +    D+      
Sbjct: 27  RVLMCEVLDEASYVKHHK--MKIAFLFSAMRHFAAELAENGVNVDYVKLDTPDNTGSLAG 84

Query: 93  WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHAL 152
            +  +       K+      E   ++    L+  L+ R   +           +     L
Sbjct: 85  EIARFSKTHNAAKVVVTEPGEYRVLQELNSLDLNLEIRTDTRFICSIDAFKAWAGDKKQL 144

Query: 153 QMYKVYT--------------PFRKALIQNLVQADLRS--------LPVPAIRLTGPVTP 190
           +M   Y               P   A   +                       +T  V  
Sbjct: 145 RMEYFYREMRKKTQILMDGERPVGGAWNYDSENRKPPKDGLSVPATYQARTDEITQEVIE 204

Query: 191 SNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLS 246
               RF D+  +     F +  Q AL+ L KF  E++  + + +D           S LS
Sbjct: 205 LVEHRFKDHFGELQHFHFAVTRQQALYALDKFIAERLASFGDYQDAMLESEPWMYHSHLS 264

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGK 305
            YL+ G+L P +C  + +  +      P +    ++ + L WREF R +          +
Sbjct: 265 FYLNCGLLLPLECAEQAENAYRQ-GAAPLNAVEGFIRQILGWREFVRGIYWLKMPGYGKE 323

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
            F+    K+        L       T    +   + +     + H+  R++         
Sbjct: 324 NFLNAKRKLP------PLYWGAP--TNMNCLSQCVSETRQHAYAHHIQRLMVMGNFALLA 375

Query: 366 LVDWRIGEEYFMSQLLDGD 384
            +      E+++    D  
Sbjct: 376 GLAPDEVNEWYLIVYADAY 394


>gi|104781824|ref|YP_608322.1| photolyase [Pseudomonas entomophila L48]
 gi|95110811|emb|CAK15524.1| putative photolyase [Pseudomonas entomophila L48]
          Length = 513

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/392 (14%), Positives = 124/392 (31%), Gaps = 48/392 (12%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLF- 107
               ++   I++++    ++L ++G    Y Q     N       L  +      +++  
Sbjct: 46  PHHPQKIVLIFSAMRHFARALRERGWTVHYVQLDEDGNSGSIAGELRRWRQALGASEIHL 105

Query: 108 --------------------YNRQYEINEVRRDKLLEKRLQHRVICK--SFDDSVLLPPG 145
                               ++R      +   +   +  Q R   +   F   +    G
Sbjct: 106 TECGEWRLEQALRDAGLPLVWHRDTRF--LCSREAFARWAQGRGHLRMEHFYRGMRKRCG 163

Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR--LTGPVTPSNIPRFFDYPFQA 203
            +L            F     + L +      P    +  LT  V      RF D+    
Sbjct: 164 LLLEPDGSPAGGAWNFDSDNRKPLPRGLRGPFPAHFEQDTLTATVVALVRQRFSDHYGDV 223

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQC 259
               +P+    A  + + F    +  + + +D  A        +++S  L+IG+L  R+ 
Sbjct: 224 DGFDYPVTHAEAQQLWQHFLDFGLAAFGDYQDAMAEGEPYLFHARISAALNIGLLDVRRL 283

Query: 260 WNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK 318
              +   + +  + P + A  ++ +LI WRE+ R +         G   +     +    
Sbjct: 284 CEDVDTAWREGRV-PLNAAEGFIRQLIGWREYVRGIYWLRMPEYAGLNHLGNHRALP--- 339

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
                  +  G T    +  A+ Q   +G+ H+  R++          +      E++++
Sbjct: 340 -----AFYWTGQTRMRCMAQAIGQTLRLGYAHHIQRLMVTGNFALLAGIAPAAICEWYLA 394

Query: 379 QLLDGD----LASNNGGWQWAASTGNDSVPYF 406
             +D      L +  G    A      S PY 
Sbjct: 395 VYIDAFDWVELPNTLGMVMHADGGYLGSKPYC 426


>gi|332715462|ref|YP_004442928.1| deoxyribodipyrimidine photolyase-like protein [Agrobacterium sp.
           H13-3]
 gi|325062147|gb|ADY65837.1| deoxyribodipyrimidine photolyase-related protein [Agrobacterium sp.
           H13-3]
          Length = 507

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 88/272 (32%), Gaps = 24/272 (8%)

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            R       R+T  V  +    F D   +  +  F +   +A   L  F  + +  +   
Sbjct: 193 PRHPVFAPDRITRDVIDTVERLFPDNFGKLENFGFAVTRADAERALSAFINDFLMNFGAT 252

Query: 234 RDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WR 288
           +D           S LS Y++ G+L   +   R+ E        P +    ++ ++I WR
Sbjct: 253 QDAMLQDDPYLNHSLLSFYINCGLLDALEV-CRVAERAYYEGAAPLNAVEGFIRQIIGWR 311

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+ R +  F     +   F           D  L   +  G T    +   + +     +
Sbjct: 312 EYMRGIYWFAGPDYVDSNFF--------QNDRPLPGFYWTGKTHMNCMATVITETIENAY 363

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVP 404
            H+  R++          +D +   ++++    D      L +  G  Q+A      + P
Sbjct: 364 AHHIQRLMITGNFALLAGIDPKAVHQWYLEVYADAYEWVELPNVIGMSQFADGGFLGTKP 423

Query: 405 ------YFRIFNPTIQGKRFDPQGTFIRHWLP 430
                 Y    +      R+DP+        P
Sbjct: 424 YAASGNYINRMSDYCSNCRYDPKERLGDKACP 455


>gi|163735251|ref|ZP_02142686.1| hypothetical protein RLO149_06847 [Roseobacter litoralis Och 149]
 gi|161391465|gb|EDQ15799.1| hypothetical protein RLO149_06847 [Roseobacter litoralis Och 149]
          Length = 509

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 137/421 (32%), Gaps = 58/421 (13%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL AA  ++D  V++  +A    + QH    ++   I+A++ +  + L  +G    Y Q 
Sbjct: 19  ALQAADKSTDMVVMS-EVADETSYVQHH--PKKIALIFAAMRKFAQHLRDEGWNVAYAQL 75

Query: 85  SNFDDSIEWLDSYCL---QQRVTKLFYNRQYEINEVRRDKLLEKR------LQHRVICKS 135
            + +++   +        Q     +      E  E R    L++       L       S
Sbjct: 76  DDSENAGSIVGELLRRAEQTGAQTVLA---TEPGEWRLIGHLKEAPLRVEMLPDGRFLAS 132

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALI-----------QNLVQADLRSLPVPAIRL 184
             +       +     L+M   Y   R+              +     D R      I  
Sbjct: 133 HQE---FEDWADGRKQLRMEYFYREMRRKTGLLMEGAQPSGGKWNFDHDNRKPAPDEITF 189

Query: 185 TGPVTPSNIPRF----------FDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQ 233
            GP+                  F   F A+ P +       AL  L  F  + +  + + 
Sbjct: 190 EGPLRFEPDETVQEVLDLVEVRFSNHFGALRPFWFATSRAEALQQLDHFISKGLPKFGDF 249

Query: 234 RDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WR 288
           +D             +S  L+IG+L+P +        F +    P +    ++ ++I WR
Sbjct: 250 QDAMLNDNRFLYHGLISTSLNIGLLTPLEVCTAAARAF-EQGDAPINAVEGFIRQIIGWR 308

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           E+ R +          +  +  T  +           +  G TG   +  A+ Q     +
Sbjct: 309 EYVRGIYFLEGPDYTSRNVLGQTRDLP--------DVYWGGKTGMNCMAKAVGQTREEAY 360

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD---LASNNGGW-QWAASTGNDSVP 404
            H+  R++          +D +   E++++   D      A N  G  Q+A      S P
Sbjct: 361 AHHIQRLMITGNFGLLAGIDPQQMHEWYLAVYADAFEWVEAPNTVGMSQFADGGIIASKP 420

Query: 405 Y 405
           Y
Sbjct: 421 Y 421


>gi|289670312|ref|ZP_06491387.1| hypothetical protein XcampmN_17961 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 530

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 119/389 (30%), Gaps = 56/389 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
           I+A++      L Q G   +Y      SN       LD+     R   L Y      +E 
Sbjct: 71  IFAAMRAFAAGLRQAGHRVRYVTIDNASNRQSIPHNLDALMAHYRAGHLEYQ---APDEW 127

Query: 118 RRDKLLEKRLQHRVICKSFDD--SVLLPPGSI--LNHALQMYKVYTPFRKALIQNLVQAD 173
           R D+ L++    ++      D    L     +     A   +++   +R+   Q+ +  D
Sbjct: 128 RLDEALQQWSAGQLFATRMVDSEHFLTARNEVAACFRAGSAWRMEAFYRRMRRQHRILLD 187

Query: 174 LRSLP----------VPAIRLTGPVTPSNIPRFFDYPF----------------QAIDPM 207
               P            A     P  P +     D+                   A    
Sbjct: 188 AVGEPEGGRWNFDHDNRAPWPGDPPAPKDWRATHDHSALWRTIEAAGVRSFGAPNAQALP 247

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           +P+  + AL  L  F    +  +    D  + +      S LS  L++ +L PR+   R 
Sbjct: 248 WPLDREEALQHLDAFIAHALPDFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPREVIARA 307

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSH 321
           +  +      P +    ++ + L WRE+ R +     P                W  D  
Sbjct: 308 EAAWRQ-GHAPLASVEGFIRQILGWREYVRGVYWSQMPGYAQLNRLDQHAPLPHWFWD-- 364

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
                  G  G   +  A+         H+  R++          +D +    +++   +
Sbjct: 365 -------GQIGMRCLADAVGNSLASAHAHHIQRLMVIGNFALLAGLDPQALHRWYLGVYI 417

Query: 382 DGD----LASNNGGWQWAASTGNDSVPYF 406
           D      L +  G  Q+A      S PY 
Sbjct: 418 DAFEWVELPNTLGMSQFADGGLLGSKPYI 446


>gi|229514244|ref|ZP_04403705.1| hypothetical protein VCB_001892 [Vibrio cholerae TMA 21]
 gi|229348224|gb|EEO13182.1| hypothetical protein VCB_001892 [Vibrio cholerae TMA 21]
          Length = 516

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 20/251 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPF 201
           G ++    +       F       L   DL  LP P      +          R      
Sbjct: 163 GYLMTADGKPEGGQWNFDADNRNKLKAPDLLQLPTPLCFDNPVASIKARLERHRIPSIGQ 222

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVL 254
                ++PI    AL +L  FC+  +  +   +D    Q         S+LS  L+  +L
Sbjct: 223 IGESLLWPINRAQALSLLAHFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLL 282

Query: 255 SPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           SPR+        +     +   +    ++ + L WRE  R +          +  +    
Sbjct: 283 SPREVIEATISAYRAAQGQISLAQVEGFVRQILGWRECVRGMYWSNMPHYQTRNHLGAQR 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           +  G T    +  A+ Q    G+ H+  R++           D    
Sbjct: 343 PLP--------SYFWNGQTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQV 394

Query: 373 EEYFMSQLLDG 383
           + +++   +D 
Sbjct: 395 DAWYLGIYIDA 405


>gi|321453621|gb|EFX64839.1| hypothetical protein DAPPUDRAFT_65902 [Daphnia pulex]
          Length = 92

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +   +  F+  SL  +  +L + G      + S      E    Y  +  + KL +  + 
Sbjct: 4   VGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKESP----TEMFKKYFKEWNIKKLTFEVEI 59

Query: 113 EINEVRRDKLLEKRLQHR 130
           E     +D+ ++K   H 
Sbjct: 60  EPYAKTQDEEIKKLADHH 77


>gi|147827517|emb|CAN66342.1| hypothetical protein VITISV_024326 [Vitis vinifera]
          Length = 1716

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 8    SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
            SV ++W ++DLRI D+  L AA       VI +++       + G   ++  F 
Sbjct: 954  SVAVLWFKHDLRIDDHPGLVAAASRHRT-VIPLYVFDRRILSRDG---KRVKFW 1003


>gi|170722172|ref|YP_001749860.1| deoxyribodipyrimidine photolyase-like protein [Pseudomonas putida
           W619]
 gi|169760175|gb|ACA73491.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           putida W619]
          Length = 513

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/397 (15%), Positives = 128/397 (32%), Gaps = 58/397 (14%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQC---SNFDDSIEWLDSYCLQQRVTKLFY 108
               ++   I++++    ++L ++G   +Y +     N       L  +      T +  
Sbjct: 46  PHHPQKIVLIFSAMRHFAQALRERGWQVEYVELNAPGNSGSIAGELQRWQQALGATHIHL 105

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSV-------LLPPGSILNHALQMYKVYTPF 161
               E         LE+ L    +   +                +     L+M   Y   
Sbjct: 106 TECGEW-------RLEQALNDAGLPLVWHRDTRFLCSRDAFARWAKDRRQLRMEHFYRGM 158

Query: 162 RKAL-------------IQNLVQADLRSLPVPAIRLTGPVTPSNIPR----------FFD 198
           RK                 NL   + + LP             +             F D
Sbjct: 159 RKRCGLLLEPDGSPVGGSWNLDADNRKPLPRRLRGPFPARFAQDEITTAVVALVGECFSD 218

Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVL 254
           +        +P+  + A  + + F +  +  + + +D  A        +++S  L+IG+L
Sbjct: 219 HYGAVEGFDYPVTHEQAQQLWQHFLEFGLAAFGDFQDAMAEGEPFLFHARISAALNIGLL 278

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEK 313
             R+    +   + +  I P + A  ++ +LI WRE+ R +         G  ++     
Sbjct: 279 DVRRLCEDVDNAWREARI-PLNAAEGFIRQLIGWREYVRGIYWLRMPEYAGLNYLG---- 333

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
                D  L + +  G+T    ++ A+ Q   +G+ H+  R++          +      
Sbjct: 334 ----NDRALPEFYWTGHTRMRCMEQAIGQTLQLGYAHHIQRLMVTGNFALLAGIVPSAIC 389

Query: 374 EYFMSQLLDGD----LASNNGGWQWAASTGNDSVPYF 406
           E++++  +D      L +  G    A      S PY 
Sbjct: 390 EWYLAVYMDAFDWVELPNTLGMVMHADGGYLGSKPYC 426


>gi|325276394|ref|ZP_08142167.1| photolyase [Pseudomonas sp. TJI-51]
 gi|324098461|gb|EGB96534.1| photolyase [Pseudomonas sp. TJI-51]
          Length = 508

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 161/475 (33%), Gaps = 60/475 (12%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL---------QVQKSLSQKGI 77
             A      +V  V I   +         R+      +           +++  L + G+
Sbjct: 58  AQALRERGWQVHYVPIDDSDNSGTIVGELRRWRERLGAAQIDLTECGEWRLEHGLRESGL 117

Query: 78  VFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD 137
              +H+ + F  S E                       E RR   +E    +R + K   
Sbjct: 118 PLTWHRDTRFLCSREAFAR-----------------WAEGRRQLRMEHF--YRGMRKRCG 158

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF 197
             +LL P    + A   +   +  RK L +NL           AI L   V      RF 
Sbjct: 159 --LLLEPDG--SPAGGAWNFDSENRKPLPRNLGAPFAARFTPDAITLA--VMALVRQRFG 212

Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGV 253
           D+  +     +P+ +Q A  + + F    +  + + +D  A        S++S  L+IG+
Sbjct: 213 DHYGEIDGFEYPVTQQQAGELWQHFLDFGLAAFGDYQDAMAEGEPYLFHSRISAALNIGL 272

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFY-PSVCMGKPFIPWT 311
           L  RQ    +++ + +  + P + A  ++ +LI WRE+ R +     P       F    
Sbjct: 273 LDVRQLCEDVQQAWREGRV-PLNAAEGFIRQLIGWREYVRGVYWLRMPDYATLNHFG--- 328

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
                     L + +  G T    +  A+ Q   +G+ H+  R++          +    
Sbjct: 329 ------NARALPEFYWTGNTRMRCMAQAIGQTLRLGYAHHVQRLMVTGNFALLAGIAPAA 382

Query: 372 GEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
             E++++  +D      L +  G    A      S PY        +        ++   
Sbjct: 383 ICEWYLAVYIDAFDWVELPNTLGMVMHADGGYLGSKPYCASGRYIQRMSDHCKACSYRVD 442

Query: 428 WLPELNNVPTQYIHAPHSWLDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQSL 482
            + E +  P   ++       +  LS N  L +V      +  L++  AA++  +
Sbjct: 443 KVVEADACPFNALYWHFLIRHRQRLSANPRLAMV------YRNLDRMAAARRDGV 491


>gi|293610961|ref|ZP_06693260.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826613|gb|EFF84979.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 507

 Score = 57.7 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 78/207 (37%), Gaps = 18/207 (8%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRL 263
           +    QNAL  L  F    + ++ + +D           S LSPYL+ G+L P++  +  
Sbjct: 227 WATTRQNALLALDHFISNILPHFGDYQDAMVYGSDFMFHSLLSPYLNCGLLLPKEVCDAA 286

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           +  +      P +    ++ + L WRE+ R +               ++++   +  + L
Sbjct: 287 QTAYYSGQA-PLNAVEGFIRQILGWREYVRGIYWL--------SMPDYSDQNTLHASTPL 337

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
            Q +  G T    +    R     G+ H+  R++          V+     E++++  +D
Sbjct: 338 PQYYWTGNTKMACMAECFRNTFAHGYAHHIQRLMITGNFALLAGVNPSEICEWYLAVYVD 397

Query: 383 GD----LASNNGGWQWAASTGNDSVPY 405
                 L +  G   +A      S PY
Sbjct: 398 AYEWVELPNTLGMAMYADGGIMASKPY 424


>gi|254454501|ref|ZP_05067938.1| photolyase [Octadecabacter antarcticus 238]
 gi|198268907|gb|EDY93177.1| photolyase [Octadecabacter antarcticus 238]
          Length = 510

 Score = 57.7 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 113/363 (31%), Gaps = 51/363 (14%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL---QQRVTKLFYNRQYEINE 116
           F+++++    + LS +G   QY +  + ++S   L        Q  ++++      E   
Sbjct: 48  FLFSAMRHFAQLLSNQGTPVQYVKYDDPENSGSLLGEVTRMATQHDISEVIVTAPAEHRL 107

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ----- 171
                L    L   V  +  DD  L  P      A    ++   +    ++         
Sbjct: 108 QVEMALWSDALGLPVTIRE-DDRFLCSPADFAAWAEGRKQLRMEYFYRDMRRKYSVLMDP 166

Query: 172 ----------------------ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
                                     +   P   +T  V      +F D+    +   F 
Sbjct: 167 DGPIGGQWNFDAENRKPPATGLTVPDTYHAPPDAITQDVIALVETQFADHFGDLLPFHFA 226

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKE 265
           +  + A   L  F  +++  + + +D           S +  YL+ G+L+P +C  R + 
Sbjct: 227 VTREQAFLALDTFLTDRLPLFGDYQDAMIQDEPWMYHSHIGLYLNCGLLAPLECIQRAEA 286

Query: 266 EFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSH 321
            + D    P +    ++ + L WRE+ R +            F+     +    W  D+ 
Sbjct: 287 AYHD-GTAPLNAVEGFIRQILGWREYVRGIYWLKMPDYKALNFLDAKRPLPAFYWTADTQ 345

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           +    +            + +     + H+  R++          +D     E+++    
Sbjct: 346 MNCMRQ-----------CITETKQNAYAHHIQRLMVLGNFALIAGLDPDAVNEWYLLVYA 394

Query: 382 DGD 384
           D  
Sbjct: 395 DAY 397


>gi|188577272|ref|YP_001914201.1| deoxyribodipyrimidine photolyase-related protein [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188521724|gb|ACD59669.1| deoxyribodipyrimidine photolyase-related protein [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 525

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 122/395 (30%), Gaps = 56/395 (14%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
           A++   I+A++      L + G   +Y      SN       L++     R  +L Y   
Sbjct: 60  AQKVLAIFAAMRAFAAGLRRDGHRVRYVTIDNASNRQSIPHNLEALMAHYRADRLDYQ-- 117

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSI--LNHALQMYKVYTPFRKALIQ 167
              +E R D+ L+     +       D    L     +     A   +++   +R+   Q
Sbjct: 118 -APDEWRLDEALQHWSAAQPFATRMVDSEHFLTARNEVAACFRAGSPWRMDVFYRRMRRQ 176

Query: 168 NLVQADLRSLP----------VPAIRLTGPVTPSNIPRFFDYPF---------------- 201
           + +  D    P            A     P  P +     D+                  
Sbjct: 177 HRILLDAAGEPEGGRWNFDHDNRAPWPGDPPAPRDWRATHDHSALWRTIEAAGVRSFGAP 236

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPR 257
            A    +P+  + AL  L  F  + +  +    D  + +      S LS  L++ +L PR
Sbjct: 237 NAQALPWPVDREEALQHLDAFIADALPDFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPR 296

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIE 315
           +   R +  +      P +    ++ + L WRE+ R +     P                
Sbjct: 297 EVIARAEAAWRQ-GHAPLAAVEGFIRQILGWREYVRGVYWSQMPGYADLNHLDQHAPLPH 355

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  D         G  G   +  A+         H+  R++          +D +    +
Sbjct: 356 WFWD---------GQIGMRCLADAVGNSLANAHAHHIQRLMVIGNFALLAGLDPQALHRW 406

Query: 376 FMSQLLDGD----LASNNGGWQWAASTGNDSVPYF 406
           ++   +D      L +  G  Q+A      S PY 
Sbjct: 407 YLGVYIDAFEWVELPNTVGMSQFADGGLLGSKPYI 441


>gi|254439258|ref|ZP_05052752.1| Deoxyribodipyrimidine photolyase-related protein [Octadecabacter
           antarcticus 307]
 gi|198254704|gb|EDY79018.1| Deoxyribodipyrimidine photolyase-related protein [Octadecabacter
           antarcticus 307]
          Length = 510

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 109/367 (29%), Gaps = 59/367 (16%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSNFDDS---IEWLDSYCLQQRVTKLFYNRQYEINE 116
            +++++    + LS  G    Y +  + ++S   +  +     Q  ++++      E   
Sbjct: 48  LLFSAMRHFAEQLSDHGHSVHYVKYDDPENSGSLLGEVTRIAAQHNISEVIVTAPAEYRL 107

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---- 172
                     L   V  +  DD  L  P      A    ++   +    ++         
Sbjct: 108 QDEMTRWSDTLSLPVTIRE-DDRFLCTPADFAAWAEGRKQLRMEYFYREMRRKYSILMDQ 166

Query: 173 -----------------------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
                                     +   P   +T  V       F D+    +   F 
Sbjct: 167 DGPIGGQWNFDAENRKPPATGLVVPETYHAPHDAITQDVLTLVATHFADHFGDLLPFHFA 226

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKE 265
           +  + AL  L  F  +++  + + +D           S +  YL+ G+L+P +C  R + 
Sbjct: 227 VTREQALLALDAFITDRLPQFGDYQDAMIQDEPWMYHSHIGLYLNCGLLNPLECIQRAEA 286

Query: 266 EFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSH 321
            +      P +    ++ + L WRE+ R +            F+     +    W  D+ 
Sbjct: 287 AYHG-GAAPLNAVEGFIRQILGWREYVRGIYWLKMPDYKTLNFLDAKRPLPEFYWTADTQ 345

Query: 322 LLQAWKQGYTGFPIIDAAMRQL----NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
           +                 MRQ         + H+  R++          +D     E+++
Sbjct: 346 MN---------------CMRQCISETKQNAYAHHIQRLMVLGNFALIAGLDPDAVNEWYL 390

Query: 378 SQLLDGD 384
               D  
Sbjct: 391 LVYADAY 397


>gi|260899790|ref|ZP_05908185.1| cryptochrome/photolyase [Vibrio parahaemolyticus AQ4037]
 gi|308110407|gb|EFO47947.1| cryptochrome/photolyase [Vibrio parahaemolyticus AQ4037]
          Length = 514

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 112/352 (31%), Gaps = 48/352 (13%)

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++      +       + FDD  + L  Y L+   +K  Y R    +E R  + L K   
Sbjct: 63  KQEEGHHVLHLTLDDTAAFDDLDQVLQHYVLEVGASKFEYQR---PDEYRLLEQLTKLKL 119

Query: 129 HRVICKSFDDSVLLPPG--------------------------SILNHALQMYKVYTPFR 162
             V+ +  D    L P                            IL    +       + 
Sbjct: 120 EGVVKRCVDTEHFLLPFAEIEQQFPQGKHVMMEHFYRRMRKRFDILMQDGKPMGEKWNYD 179

Query: 163 KALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
                 L   D+  LP P   +  ++  V                D ++P+    +L +L
Sbjct: 180 ANNRNKLKAKDIEQLPKPLMFSHDVSDIVERLGRHNIQTIGKLNGDLLWPVSRSQSLSLL 239

Query: 220 RKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
             FC+  + ++   +D    +         S+LS  ++  +L P++  +     +     
Sbjct: 240 AHFCQVCLPHFGRFQDAMTAEHESKWSLYHSRLSFSMNSKLLHPKEVIDAALSAYQSNKH 299

Query: 273 KPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
              +    ++ + L WREF R +           P  P   ++E ++D         G T
Sbjct: 300 IDIAQVEGFIRQILGWREFIRGVYWA------NMPQYPQKNELEASRDLPDYFWT--GKT 351

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
               +  A+ Q     + H+  R++          ++    + +++   +D 
Sbjct: 352 KMACMRNAIGQSLDYAYAHHIQRLMVTGNFCLLTEMNPDQVDAWYLGIYVDA 403


>gi|238024328|ref|YP_002908560.1| Deoxyribodipyrimidine photolyase-like protein [Burkholderia glumae
           BGR1]
 gi|237878993|gb|ACR31325.1| Deoxyribodipyrimidine photolyase-related protein [Burkholderia
           glumae BGR1]
          Length = 509

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 109/364 (29%), Gaps = 28/364 (7%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
            R    I A+L  + +SL  + I +        D  +    +                  
Sbjct: 76  PRNRQAIPANLDLLAESLGARRIEYLLPDEWRLDQQLRAYAAASAIPVAAV-----DTGH 130

Query: 115 NEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
               RD L E     R      F  ++ +    +L+           +     Q      
Sbjct: 131 FYTTRDALREAMGAGRPWVMDRFYRAMRVRHRILLDADGAPAGGRWNYDADNRQAWSGQP 190

Query: 174 LRSL---PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
                  P    R       +     F  P  A D  +P+    AL  L +F ++ + ++
Sbjct: 191 PEPADWRPRHDHRELWARIEAAGVHSFGKP-SADDLRWPVDRDEALACLDRFIRDALPWF 249

Query: 231 VEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
            + +D           S LS  L++ +L PR+   R +  +    +   +        L 
Sbjct: 250 GQFQDAMHTSAPRLFHSMLSFALNVKMLDPREVVARAEAAYRAGAVPLAAAEGFIRQILG 309

Query: 287 WREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           WREF R +     P       F       +W  +         G T    +  A++Q   
Sbjct: 310 WREFVRGVYWARMPDYARSNGFGHRRALPDWFWN---------GNTRMACMSHALQQSLD 360

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGND 401
               H+  R++          +D +    +++   +D      + +  G  Q+A      
Sbjct: 361 HAHAHHIQRLMVIGNFALLAGLDPQAVHAWYLGVYIDAFEWVEMPNTLGMSQYADGGAMA 420

Query: 402 SVPY 405
           + PY
Sbjct: 421 TKPY 424


>gi|254477572|ref|ZP_05090958.1| photolyase [Ruegeria sp. R11]
 gi|214031815|gb|EEB72650.1| photolyase [Ruegeria sp. R11]
          Length = 516

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 112/362 (30%), Gaps = 43/362 (11%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F++A++      L + G    Y +  + D+S             T        E  E
Sbjct: 57  KLAFVFAAMRHFADELRENGWSVTYVRLDDSDNSGSLPTELDRVLSETPDCSVLMTEPAE 116

Query: 117 VRRDKLLEKRLQHR-VICKSFDDSVLLPPG--------------------SILNHALQMY 155
            R    L    + R +     +DS  +                        +      + 
Sbjct: 117 YRLRTALTSWAEQREIDLTLLEDSRFIATHAEFQEWAKGRKQLRMEYFYREMRRKTGLLM 176

Query: 156 KVYTPFRKAL----IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---YPFQAIDPMF 208
           +   P                D   +P P       +T   +    D     F  ++P +
Sbjct: 177 QGDEPEGGQWNFDAENRKPAQDDMFMPGPFEVEPDTITKEVLALVADRFSENFGTLEPFW 236

Query: 209 PIGEQN-ALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRL 263
               +  AL  L  F    +  + + +D           S L+ Y++ G+L+P +   R+
Sbjct: 237 FATTRADALRALDHFVDRALASFGDYQDAMLEGRPFLYHSVLAQYINAGLLNPLEVCRRV 296

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           +  + D    P +    ++ ++I WRE+ R +          + F+        +    L
Sbjct: 297 ERAYYD-SDAPLNAVEGYIRQIIGWREYVRGIYWLRMPDYTKQNFL--------DASREL 347

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
              +  G T    + AA+ Q     + H+  R++          VD     E++++   D
Sbjct: 348 PDFYWTGETDMACMAAAIGQTRDEAYAHHIQRLMVTGNFAMLAGVDPHQVHEWYLAVYAD 407

Query: 383 GD 384
             
Sbjct: 408 AY 409


>gi|162606050|ref|XP_001713540.1| hypothetical protein GTHECHR1043 [Guillardia theta]
 gi|13794460|gb|AAK39835.1|AF165818_43 hypothetical protein [Guillardia theta]
          Length = 272

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 8/119 (6%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           ++W R DLRI DNK L      ++     V+     + +    S ++  F+  S+  ++ 
Sbjct: 68  ILWFRYDLRINDNK-LIELLKTNNNDYYLVYCFDKNEIK--NYSKKKLTFLKQSVETLRD 124

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-FYNRQYEINEVRRDKLLEKRLQ 128
           +L +     +Y+      DSI    +   +  +TK+ + +R  + N++ ++  + K+L+
Sbjct: 125 NLRK----LEYNLMIMEGDSISVFKNLKEKFLITKISYSSRSNKKNDLEKEFEIIKKLK 179


>gi|153802694|ref|ZP_01957280.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|124121779|gb|EAY40522.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 516

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 80/251 (31%), Gaps = 20/251 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS---NIPRFFDYPF 201
           G ++   ++       F       L   DL  LP P    +   +        R      
Sbjct: 163 GYLMTADVKPEGGQWNFDADNRNKLKAPDLLQLPTPLCFDSPVASIKARLERHRIPSIGQ 222

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVL 254
                ++PI    AL +L  FC+  +  +   +D    Q         S+LS  L+  +L
Sbjct: 223 IGESLLWPINRAQALSLLAHFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLL 282

Query: 255 SPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           SPR+        +     +   +    ++ + L WRE+ R +          +  +    
Sbjct: 283 SPREVIEATISAYRAAQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQR 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           +  G T    +  A+ Q    G+ H+  R++           D    
Sbjct: 343 PLP--------SYFWNGQTKMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQV 394

Query: 373 EEYFMSQLLDG 383
           + +++   +D 
Sbjct: 395 DAWYLGIYIDA 405


>gi|294085610|ref|YP_003552370.1| deoxyribodipyrimidine photolyase-like protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665185|gb|ADE40286.1| deoxyribodipyrimidine photolyase-related protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 515

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 67/413 (16%), Positives = 138/413 (33%), Gaps = 63/413 (15%)

Query: 18  LRI-------TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           LR+        D  +L    + +D  V+   +     + +H    R+  F+++++    +
Sbjct: 8   LRLVLADQLTHDLASLCD-INMADDVVMLCEVQDEVTYVRHHK--RKVAFLFSAMRHFAE 64

Query: 71  SLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR---L 127
            L +KGI   Y    +  ++  +         +         E  E R    +++    L
Sbjct: 65  ELRRKGITVHYVTLDDSKNTGSFTSEVGRAITLFAPDRLILTEPGEYRVRAAMDEWRQVL 124

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQN------------------- 168
              V  +  DD  L         A    ++   F    ++                    
Sbjct: 125 DVDVEIRD-DDRFLCTHDEFSIWAEGRKQLRMDFFYRDMRRRFDILMQGDTPIGDKWNYD 183

Query: 169 --------LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILR 220
                   L Q        P   +T  V      R  D+     D  F +  + AL +L 
Sbjct: 184 ADNRESPDLTQVVPAPYRCPPDDITKEVLTLVAARCADHFGSLEDFDFAVTRKGALEVLA 243

Query: 221 KFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKS 276
           KF  E++  + + +D           S +  YL+ G+L+P +    +++E+ +    P +
Sbjct: 244 KFIDERLPLFGKFQDAMIEDEPWMYHSHIGFYLNAGLLTPLEVIKAVEQEYHN-GNAPLN 302

Query: 277 GAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
               ++ + L WREF R +        +  P       +E ++    L       TG   
Sbjct: 303 AVEGFIRQILGWREFIRGIY------WLKMPGYAALNYLEASRPLPALFW-----TGDTR 351

Query: 336 IDAAMRQ-LNTI---GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           ++  MRQ ++      + H+  R++          +D  +  E+++    D  
Sbjct: 352 MN-CMRQSISQTARYAYAHHIQRLMVLGNFALLTGLDPVMVNEWYLVVYADAY 403


>gi|15636683|gb|AAL02137.1| deoxyribodipyrimidine photo-lyase [Branchiostoma belcheri]
          Length = 202

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 30/81 (37%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN AL  A   +    + +++      +    S R   F+   L +V++
Sbjct: 122 VYWMSRDQRVQDNWALLYAQQLAMKHQVPLYVCFCLVPKFLEASIRHYGFMLKGLEEVER 181

Query: 71  SLSQKGIVFQYHQCSNFDDSI 91
            L    I F        D   
Sbjct: 182 ELQSLDISFHLLTGYAVDVLP 202


>gi|37677084|ref|NP_937480.1| deoxyribodipyrimidine photolyase-related protein [Vibrio vulnificus
           YJ016]
 gi|37201629|dbj|BAC97450.1| deoxyribodipyrimidine photolyase-related protein [Vibrio vulnificus
           YJ016]
          Length = 516

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 123/371 (33%), Gaps = 57/371 (15%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +    +A++    ++L Q+G + +Y             EW+ + C Q ++T   Y R   
Sbjct: 48  KVCAFFAAMAHFSQTLQQQGHLVRYIDLDESCQRATLTEWITALCQQHQITHFEYQR--- 104

Query: 114 INEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSI--LNHALQMYKVYTPFRKALIQNL 169
            +E R  + L   L       +  D    +LP   I       +   +   +R+   Q+ 
Sbjct: 105 PDEYRLLQQL-HNLSILGTTITCVDSEHFILPFDEIEARFAQAKPPLMEHFYRQMRKQHN 163

Query: 170 VQADLRSLP----------------------VPAIRLTGPVTPSNIPRFFDYPFQAIDP- 206
           V  D +  P                      +P   +      + + R   +    I   
Sbjct: 164 VLLDEQKKPLGGKWNYDADNRNKLSDKDRDALPTPLMFANPVDTILQRLERHKVDCIGEA 223

Query: 207 ----MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-------SQLSPYLSIGVLS 255
               ++P+    AL +L  FC+  + Y+   +D    Q T       S+LS  L+  ++S
Sbjct: 224 QTPLLWPVNRSQALTLLAHFCQICLPYFGRFQDAMTHQHTASWSLYHSRLSFALNSKLIS 283

Query: 256 PRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTE 312
           P +  N     +         +    ++ + L WRE+ R +     P             
Sbjct: 284 PTEVINTAISSYRHNQDGISLAQIEGFVRQILGWREYVRGIYWSQMPHYATLNALQAKR- 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
                    L   +  G T    + AA+ Q  T  + H+  R++           D    
Sbjct: 343 --------TLPSYFWTGETNMACMHAAISQSLTFAYAHHIQRLMVTGNFALLADCDPDEV 394

Query: 373 EEYFMSQLLDG 383
           E++++   +D 
Sbjct: 395 EQWYLGIYIDA 405


>gi|294626955|ref|ZP_06705546.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598815|gb|EFF42961.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 525

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 121/395 (30%), Gaps = 56/395 (14%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
           A++   I+A++      L + G   +Y      SN       L++     R   L Y   
Sbjct: 60  AQKVLAIFAAMRAFAAGLRRAGHRVRYVTIDNASNRQSIPHNLEALMAHYRAGHLEYQ-- 117

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSILN--HALQMYKVYTPFRKALIQ 167
              +E R D+ L+     +       D    L     +         +++   +R+   Q
Sbjct: 118 -APDEWRLDEALQHWSAAQPFATRMVDSEHFLTARNEVAACLRTGSPWRMEVFYRRMRRQ 176

Query: 168 NLVQADLRSLP----------VPAIRLTGPVTPSNIPRFFDYP-------------FQAI 204
           + +  D    P            A     P  P +     D+              F A 
Sbjct: 177 HRILLDAAGEPEGGRWNFDHDNRAPWPGNPPAPQDWRTTHDHSALWHTIEAAGVRSFGAT 236

Query: 205 DPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPR 257
           +     +P+    AL  L  F    +  +    D  + +      S LS  L++ +L PR
Sbjct: 237 NAQALPWPLDRDEALQHLEAFIAHALPDFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPR 296

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIE 315
           +   R +  +      P + A  ++ + L WRE+ R +     P                
Sbjct: 297 EVIARAEAAWRQ-GHAPLAAAEGFIRQILGWREYVRGVYWSQMPGYAQLNHLDQHAPLPH 355

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  D         G  G   +  A+         H+  R++          +D +    +
Sbjct: 356 WFWD---------GQIGMRCLADAVGNSLANAHAHHIQRLMVIGNFALLAGLDPQALHRW 406

Query: 376 FMSQLLDGD----LASNNGGWQWAASTGNDSVPYF 406
           ++   +D      L +  G  Q+A      S PY 
Sbjct: 407 YLGVYIDAFEWVELPNTVGMSQFADGGLLGSKPYI 441


>gi|153837512|ref|ZP_01990179.1| photolyase [Vibrio parahaemolyticus AQ3810]
 gi|149749108|gb|EDM59913.1| photolyase [Vibrio parahaemolyticus AQ3810]
          Length = 514

 Score = 57.3 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 113/352 (32%), Gaps = 48/352 (13%)

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           ++      +       + FDD  + L  Y L+   +K  Y R    +E R  + L K   
Sbjct: 63  KQEEGHHVLHLTLDDTAAFDDLDQVLQHYVLEVGASKFEYQR---PDEYRLLEQLTKLKL 119

Query: 129 HRVICKSFDDSVLLPPG--------------------------SILNHALQMYKVYTPFR 162
             V+ +  D    L P                            IL    +       + 
Sbjct: 120 EGVVKRCVDTEHFLLPFAEIEQQFPQGKHIMMEHFYRRMRKRFDILMQDGKPVGEKWNYD 179

Query: 163 KALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
                 L   D+  LP P   ++ +   V      +         D ++P+    +L +L
Sbjct: 180 ANNRNKLKAKDIEQLPKPLMFSLNVDEIVERLTRHKISTIGSLNGDLLWPVNRAQSLSLL 239

Query: 220 RKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI 272
             FC+  + ++   +D    +         S+LS  ++  +L P++  +     +     
Sbjct: 240 AHFCQVCLPHFGRFQDAMTAEHESKWSLYHSRLSFSMNSKLLHPKEVIDAALSAYQSNKH 299

Query: 273 KPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYT 331
              +    ++ + L WREF R +           P  P   ++E ++D         G T
Sbjct: 300 IDIAQVEGFVRQILGWREFIRGVYWA------NMPQYPQKNELEASRDLPDYFWT--GKT 351

Query: 332 GFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
               +  A+ Q     + H+  R++          ++    + +++   +D 
Sbjct: 352 KMACMRNAIGQSLDYAYAHHIQRLMVTGNFCLLTEMNPDQVDAWYLGIYVDA 403


>gi|58581489|ref|YP_200505.1| hypothetical protein XOO1866 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426083|gb|AAW75120.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 525

 Score = 57.3 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 122/395 (30%), Gaps = 56/395 (14%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
           A++   I+A++      L + G   +Y      SN       L++     R  +L Y   
Sbjct: 60  AQKVLAIFAAMRAFAAGLRRDGHRVRYVTIDNASNRQSIPHNLEALMAHYRADRLDYQ-- 117

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSI--LNHALQMYKVYTPFRKALIQ 167
              +E R D+ L+     +       D    L     +     A   +++   +R+   Q
Sbjct: 118 -APDEWRLDEALQHWSAAQPFATRMVDSEHFLTARNEVAACFRAGSPWRMDVFYRRMRRQ 176

Query: 168 NLVQADLRSLP----------VPAIRLTGPVTPSNIPRFFDYPF---------------- 201
           + +  D    P            A     P  P +     D+                  
Sbjct: 177 HRILLDAAGEPEGGRWNFDHDNRAPWPGDPPAPRDWRATHDHSALWRTIEAAGVRSFGAP 236

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPR 257
            A    +P+  + AL  L  F  + +  +    D  + +      S LS  L++ +L PR
Sbjct: 237 NAQALPWPVDREEALQHLDAFIADALPDFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPR 296

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIE 315
           +   R +  +      P +    ++ + L WRE+ R +     P                
Sbjct: 297 EVIARAEAAWRQ-GHAPLAAVEGFIRQILGWREYVRGVYWSQMPGYADLNHLDQHAPLPH 355

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  D         G  G   +  A+         H+  R++          +D +    +
Sbjct: 356 WFWD---------GQIGMRCLADAVGNSLANAHAHHIQRLMVIGNFALLAGLDPQALHRW 406

Query: 376 FMSQLLDGD----LASNNGGWQWAASTGNDSVPYF 406
           ++   +D      L +  G  Q+A      S PY 
Sbjct: 407 YLGVYIDAFEWVELPNTVGMSQFADGGLLGSKPYI 441


>gi|110637465|ref|YP_677672.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC
          33406]
 gi|110280146|gb|ABG58332.1| deoxyribodipyrimidine photolyase [Cytophaga hutchinsonii ATCC
          33406]
          Length = 103

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 5  TAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYAS 64
            +SV++VW + DLR TD++ LY      +  V+ V+   P     +    R S F++ S
Sbjct: 2  NKVSVNIVWFKRDLRFTDHEPLYN-DRQQNVPVLLVYFFEPSMMTYNNSDTRHSRFVHES 60


>gi|27367333|ref|NP_762860.1| hypothetical protein VV2_0935 [Vibrio vulnificus CMCP6]
 gi|27358902|gb|AAO07850.1| hypothetical protein VV2_0935 [Vibrio vulnificus CMCP6]
          Length = 516

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 122/371 (32%), Gaps = 57/371 (15%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +    +A++    ++L Q+G + +Y             EW+ + C Q ++T   Y R   
Sbjct: 48  KVCAFFAAMAHFSQTLQQQGHLVRYIDLDESCQRTTLTEWITALCQQHQITHFEYQR--- 104

Query: 114 INEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSI--LNHALQMYKVYTPFRKALIQNL 169
            +E R  + L   L       +  D    +LP   I       +   +   +R+   Q+ 
Sbjct: 105 PDEYRLLQQL-HNLSILGTTITCVDSEHFILPFDEIEARFAQAKPPLMEHFYRQMRKQHN 163

Query: 170 VQADLRSLP----------------------VPAIRLTGPVTPSNIPRFFDY-----PFQ 202
           V  D +  P                      +P   +      + + R   +        
Sbjct: 164 VLLDEQKKPLGGKWNYDADNRNKLSDKDRDALPTPLMFANPVDTILQRLERHQVDCIGEA 223

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-------SQLSPYLSIGVLS 255
               ++P+    AL +L  FC+  + Y+   +D    Q T       S+LS  L+  ++S
Sbjct: 224 QTPLLWPVNRSQALTLLAHFCQICLPYFGRFQDAMTHQHTASWSLYHSRLSFALNSKLIS 283

Query: 256 PRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTE 312
           P +  N     +         +    ++ + L WRE+ R +     P             
Sbjct: 284 PTEVINTAISSYRHNQDGISLAQIEGFVRQILGWREYVRGIYWSQMPHYATLNALQAKR- 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
                    L   +  G T    + AA+ Q  T  + H+  R++           D    
Sbjct: 343 --------TLPSYFWTGETNMACMHAAISQSLTFAYAHHIQRLMVTGNFALLAGCDPDEV 394

Query: 373 EEYFMSQLLDG 383
           E++++   +D 
Sbjct: 395 EQWYLGIYIDA 405


>gi|258624008|ref|ZP_05718961.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258583802|gb|EEW08598.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 516

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 83/258 (32%), Gaps = 28/258 (10%)

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS----NIP 194
           S L+ P        +       F       L   DL +LP P +R   P++         
Sbjct: 163 SYLMEPD------GKPEGGQWNFDADNRNKLKAQDLLNLPAP-LRFDNPISSIKARLERH 215

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSP 247
                       ++PI    AL +L  FC+  +  +   +D    +         S+LS 
Sbjct: 216 GIESMGRVGDSLLWPINRGQALSLLAHFCQHCLTNFGRFQDAMTAEHPHSWSLYHSRLSF 275

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGK 305
            L+  +LSPR+      E +         +    ++ + L WRE+ R +          +
Sbjct: 276 ALNCKLLSPREVIETAIETYRLAQGGISLAQIEGFVRQILGWREYVRGMYWSNMPSYKTR 335

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             +     +           +  G T    +  A+ Q    G+ H+  R++         
Sbjct: 336 NHLQALRPLP--------GYFWHGQTHMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLT 387

Query: 366 LVDWRIGEEYFMSQLLDG 383
             +    + +++   +D 
Sbjct: 388 ECNPDQVDAWYLGIYIDA 405


>gi|295689306|ref|YP_003592999.1| deoxyribodipyrimidine photolyase-like protein [Caulobacter segnis
           ATCC 21756]
 gi|295431209|gb|ADG10381.1| deoxyribodipyrimidine photolyase-related protein [Caulobacter
           segnis ATCC 21756]
          Length = 501

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/394 (12%), Positives = 116/394 (29%), Gaps = 43/394 (10%)

Query: 24  KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
           + L A      A+ + + + +  +        ++   +++++ Q  + L  KG+  +Y  
Sbjct: 9   EGLSALSDIDPARDVVLMVESVAEATAWKHHKQKLVLVWSAMRQFAERLRAKGLRVRYVT 68

Query: 84  CSNFDDSIEWLDSYCLQQR---VTKLFYNRQ---------------YEINEVRRDKLLEK 125
             + D++                 ++                      I     D+ L  
Sbjct: 69  LDDPDNTRTIAGEVTRALGEGAFDRVVRTACGKWGLEQALLNLDVGVPIETREDDRFLCS 128

Query: 126 RLQHRVICK-SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRL 184
           R +     +   +  +      +      +     P       +          V   + 
Sbjct: 129 RAEFAAWAEGRRELRMEFFYREMRRRTGLLMDGDKPAGGRWNFDPENRKKLPKGVRPPQR 188

Query: 185 TGPVTPSNIPRFFDYPFQAIDPM--------FPIGEQNALHILRKFCKEKVYYYVEQRDI 236
                 +      +      D          +P   + A   L  F    +  + + +D 
Sbjct: 189 LRAAPNATTQTVIEMVSAGFDDHFGMLDAFGWPTNPEEAEATLEHFLAHMLPEFGDWQDA 248

Query: 237 PAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFY 291
            A +        +SP L+IG+L P     R +  + +    P +    ++ ++I WREF 
Sbjct: 249 MAWEQPFLWHGLISPALNIGLLDPLDICRRAEAAWREGRA-PLNAVEGFIRQIIGWREFV 307

Query: 292 RHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           R +     P   +         K+ W         +  G T    +  A+R      + H
Sbjct: 308 RGVYWLKMPEYGLRNALEAEG-KLPW--------FYWTGETDMACVADAVRSARDHAYAH 358

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           +  R++    L   L V     ++++M    D  
Sbjct: 359 HIQRLMVTGNLAMLLGVHPDAVDDWYMVVFADAY 392


>gi|113971855|ref|YP_735648.1| deoxyribodipyrimidine photolyase-like protein [Shewanella sp. MR-4]
 gi|113886539|gb|ABI40591.1| deoxyribodipyrimidine photolyase-related protein [Shewanella sp.
           MR-4]
          Length = 525

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 114/364 (31%), Gaps = 53/364 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW---LDSYCLQQRVTKLFYNRQYEINEV 117
            ++++ Q    L   G   +Y    +  D  +    ++ +  +    K  Y R    +E 
Sbjct: 63  FFSAMAQFASELGAAGHQVRYLTLDDTQDFADLNALIEYFVAETGAIKFEYQR---PDEY 119

Query: 118 RRDKLLEKR-LQHRVICKSFDDSVLLPPGSILNH-------------------------A 151
           R    L +  L + V+     +  L P   I                             
Sbjct: 120 RLLAQLSQLKLANAVVNCVDTEHFLFPFDEIDREFPQGQHRLMEHFYRRMRKRFNILMTD 179

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMF 208
            +       F     Q L   D++SLP P +    +   +                  ++
Sbjct: 180 GKPVGGQWNFDANNRQKLKSQDIKSLPTPLMFGHNVQDILERLQRHGINTMGKADTRLLW 239

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPRQCWN 261
           PI    +L +L+ FC+  +  +   +D    Q         S+LS  L+  ++SP +  N
Sbjct: 240 PINRAQSLELLQYFCEYCLPAFGRFQDAMTQQHPAQWSLYHSRLSFSLNAKLISPLEVIN 299

Query: 262 RLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNKD 319
            + E +        +    ++ + L WRE+ R +  A  P            +       
Sbjct: 300 AVIEHYHANPFIEIAQVEGFVRQILGWREYVRGIYWANMPQYASINALEATRK------- 352

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
             L   +  G T    +  A+ Q     + H+  R++          +     +++++  
Sbjct: 353 --LPDYFWHGKTRMNCLHHALSQSLDYAYAHHIQRLMVIGNFCLLTEIAPDEVDKWYLGV 410

Query: 380 LLDG 383
            +D 
Sbjct: 411 YVDA 414


>gi|294667314|ref|ZP_06732533.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602866|gb|EFF46298.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 537

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 112/369 (30%), Gaps = 52/369 (14%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
           A++   I+A++      L + G   +Y      SN       L++     R   L Y   
Sbjct: 60  AQKVLAIFAAMRAFAAGLRRAGHRVRYVTIDNASNRQSIPHNLEALMAHYRAGHLEYQ-- 117

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSILN--HALQMYKVYTPFRKALIQ 167
              +E R D+ L+     +       D    L     +         +++   +R+   Q
Sbjct: 118 -APDEWRLDEALQHWSAAQPFATRMVDSEHFLTARNEVAACLRTGSPWRMEVFYRRMRRQ 176

Query: 168 NLVQADLRSLP----------VPAIRLTGPVTPSNIPRFFDYP-------------FQAI 204
           + +  D    P            A     P  P +     D+              F A 
Sbjct: 177 HRILLDAAGEPEGGRWNFDHDNRAPWPGNPPAPQDWRTTHDHSALWHTIEAAGVRSFGAT 236

Query: 205 DPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPR 257
           +     +P+    AL  L  F    +  +    D  + +      S LS  L++ +L PR
Sbjct: 237 NAQALPWPLDRDEALQHLEAFIAHALPDFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPR 296

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIE 315
           +   R +  +      P + A  ++ + L WRE+ R +     P                
Sbjct: 297 EVIARAEAAWRQ-GHAPLAAAEGFIRQILGWREYVRGVYWSQMPGYAQLNHLDQHAPLPH 355

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  D         G  G   +  A+         H+  R++          +D +    +
Sbjct: 356 WFWD---------GQIGMRCLADAVGNSLANAHAHHIQRLMVIGNFALLAGLDPQALHRW 406

Query: 376 FMSQLLDGD 384
           ++   +D  
Sbjct: 407 YLGVYIDAF 415


>gi|152994373|ref|YP_001339208.1| deoxyribodipyrimidine photolyase-like protein [Marinomonas sp.
           MWYL1]
 gi|150835297|gb|ABR69273.1| deoxyribodipyrimidine photolyase-related protein [Marinomonas sp.
           MWYL1]
          Length = 522

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 92/275 (33%), Gaps = 25/275 (9%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQA 203
           ++    +       +  A    L   DL  +P P      +T  +               
Sbjct: 172 LMADEREPEGGQWNYDLANRNKLKAQDLADIPTPLCFQHDVTHLLERIQRHNIPSLGKAE 231

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSP 256
              ++P+  ++AL++L  FC+  +  +   +D    Q         S+LS  L+  ++SP
Sbjct: 232 SSLLWPVTSRDALNLLTFFCEHLLPNFGRFQDAMTNQTPHSWSLYHSRLSFALNAKLISP 291

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKI 314
           +         + +      +    ++ + L WRE+ R +     P               
Sbjct: 292 KHVIKAAVSAYQENDNIDIAQIEGFVRQILGWREYVRGMYWINMPDYQQQNDLNAER--- 348

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                  L   +  G T    + +A+ Q     + H+  R++          +  +  ++
Sbjct: 349 ------ALPSYFWNGQTKMKCLASAIGQSLDYAYAHHIQRLMVTGNFCLLTEIQPQQVDK 402

Query: 375 YFMSQLLDG----DLASNNGGWQWAASTGNDSVPY 405
           +++   +D     +L +  G  Q+A      S PY
Sbjct: 403 WYLGIYVDALEWVELPNTRGMSQFADGGWIASKPY 437


>gi|320159174|ref|YP_004191552.1| hypothetical protein VVM_02791 [Vibrio vulnificus MO6-24/O]
 gi|319934486|gb|ADV89349.1| hypothetical protein VVMO6_04327 [Vibrio vulnificus MO6-24/O]
          Length = 516

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 122/371 (32%), Gaps = 57/371 (15%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +    +A++    ++L Q+G + +Y             EW+ + C Q ++T   Y R   
Sbjct: 48  KVCAFFAAMAHFSQTLQQQGHLVRYIDLDESCQRATLTEWITALCQQHQITHFEYQR--- 104

Query: 114 INEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSI--LNHALQMYKVYTPFRKALIQNL 169
            +E R  + L   L       +  D    +LP   I       +   +   +R+   Q+ 
Sbjct: 105 PDEYRLLQQL-HNLSILGTTITCVDSEHFILPFDEIEARFAQAKPPLMEHFYRQMRKQHN 163

Query: 170 VQADLRSLP----------------------VPAIRLTGPVTPSNIPRFFDY-----PFQ 202
           V  D +  P                      +P   +      + + R   +        
Sbjct: 164 VLLDEQKKPLGGKWNYDADNRNKLSDKDRDALPTPLMFANPVDTILQRLERHQVDCIGEA 223

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT-------SQLSPYLSIGVLS 255
               ++P+    AL +L  FC+  + Y+   +D    Q T       S+LS  L+  ++S
Sbjct: 224 QTPLLWPVNRSQALTLLAHFCQICLPYFGRFQDAMTHQHTASWSLYHSRLSFALNSKLIS 283

Query: 256 PRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTE 312
           P +  N     +         +    ++ + L WRE+ R +     P             
Sbjct: 284 PTEVINTAISSYRHNQDGISLAQIEGFVRQILGWREYVRGIYWSQMPHYATLNALQAKR- 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
                    L   +  G T    + AA+ Q  T  + H+  R++           D    
Sbjct: 343 --------TLPSYFWTGETNMACMHAAISQSLTFAYAHHIQRLMVTGNFALLAGCDPDEV 394

Query: 373 EEYFMSQLLDG 383
           E++++   +D 
Sbjct: 395 EQWYLGIYIDA 405


>gi|114561958|ref|YP_749471.1| deoxyribodipyrimidine photolyase-related protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333251|gb|ABI70633.1| deoxyribodipyrimidine photolyase-related protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 528

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 53/392 (13%), Positives = 123/392 (31%), Gaps = 52/392 (13%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +    +AS+ Q  ++LS+ G    Y    +     +            +L      + +E
Sbjct: 61  KVCAFFASMAQFAQALSKSGHQVMYLTLDDTQHYADLPALLENITTTQQLTIFEYQQPDE 120

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGS--------------------------ILNH 150
            R  + L +    +V   S+D    L P +                          +L  
Sbjct: 121 YRLAQQLSELALPKVSKNSYDTEHFLLPFADIQREFTPNKHVKMEFFYRRMRKRFNVLMQ 180

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPM 207
             +       F +    +  + DL  +P P   A  ++  +                  +
Sbjct: 181 EGEPLGGQWNFDQQNRASFKKNDLADVPAPLVFANDVSDILARLKRHNINTIGKAESQLL 240

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-------TSQLSPYLSIGVLSPRQCW 260
           +P+  + +  +L  FC+  +  +   +D              S+LS  L+  ++SP +  
Sbjct: 241 WPVNRRQSRELLDFFCQHLLIRFGHFQDAMTENSRADWSLYHSRLSFALNAKIISPSEVI 300

Query: 261 NRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKIEWN 317
           N++   +         +    ++ + L WRE+ R +     P+                 
Sbjct: 301 NKVIAHWQAHQHDISLAQVEGFVRQILGWREYVRGIYWCNMPNYATKNALQALR------ 354

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
               L   +    T    +  A++Q     + H+  R++          ++    + +++
Sbjct: 355 ---PLPGYFWTANTKMNCMHHAIKQSLDYAYAHHIQRLMVTGCFSLLAGINPDEVDHWYL 411

Query: 378 SQLLDG----DLASNNGGWQWAASTGNDSVPY 405
              +D     ++ +  G  Q+A      + PY
Sbjct: 412 GIYIDAIEWVEMPNTRGMTQFADGGIVATKPY 443


>gi|259416030|ref|ZP_05739950.1| bcct transporter [Silicibacter sp. TrichCH4B]
 gi|259347469|gb|EEW59246.1| bcct transporter [Silicibacter sp. TrichCH4B]
          Length = 510

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 58/367 (15%), Positives = 111/367 (30%), Gaps = 48/367 (13%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN--FDDSIEWLDSYCLQQRVTKLFYN 109
               ++   + A++ +    L Q G    Y +      D  +  L     +   +++   
Sbjct: 45  PHHPKKIALVLAAMRKFAAHLRQLGWQVAYRRLDEEGADSIVGELLRRAEEFDASEVLA- 103

Query: 110 RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI--- 166
                 E R  + L+     +V   + DD  L       + A    ++   +   L+   
Sbjct: 104 --TTPGEWRLIRALKYA-PLKVHFHA-DDRFLATRADFADWAAGKKQLRMEYFYRLMRKK 159

Query: 167 -------------QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY----------PFQA 203
                        +    ++ R  P   I   GP          D            F  
Sbjct: 160 TGLLMEGDDPVGGKWNYDSENRKAPPKEIDHAGPPRFEPDKDVKDVLELVEARFGKHFGD 219

Query: 204 IDPMF-PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQ 258
           + P +       AL  L  F    +  + + +D           S LSPYL+IG+LSP +
Sbjct: 220 LRPFWFATTRDQALEALAHFITHALPQFGDFQDAMMTDERWLYHSILSPYLNIGLLSPLE 279

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
                 E        P +    ++ + L WREF R +          +  +  T  +   
Sbjct: 280 V-CEAAEAEWQAGRAPLNAVEGFIRQILGWREFVRGIYFIEGEDYPSRNALGQTRALP-- 336

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
                L    +  T    +   +RQ     + H+  R++          VD     ++++
Sbjct: 337 ----SLYWGAE--TEMHCLSQVVRQTQEEAYAHHIQRLMVTGNFALLAGVDPAEVHDWYL 390

Query: 378 SQLLDGD 384
           +   D  
Sbjct: 391 AVYADAF 397


>gi|333025959|ref|ZP_08454023.1| hypothetical protein STTU_3463 [Streptomyces sp. Tu6071]
 gi|332745811|gb|EGJ76252.1| hypothetical protein STTU_3463 [Streptomyces sp. Tu6071]
          Length = 504

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 15/208 (7%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQ---GTSQLSPYLSIGVLSPRQCWNR 262
           +FP   + A   LR+F   ++  +    D + A       S LS  L++G+L P +C   
Sbjct: 222 LFPATRREARSALRRFVAHRLAGFGPYEDAMLAADPVLSHSLLSAPLNLGLLDPAECAEL 281

Query: 263 LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            +  + +    P +    ++ ++  WRE+   L   +         +  T  +       
Sbjct: 282 AERAYRE-GEAPLNSVEGFVRQVAGWREYVWQLYWHFGEEYRELNALRHTAPLP-----E 335

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
              +   G      +   + Q+   GW H+  R++           D     ++F    +
Sbjct: 336 WFLSLDAGAVTANCLSTVLAQVRDTGWTHHIPRLMILGSRALQDGWDPAAVTDWFHRCFV 395

Query: 382 DGD----LASNNGGWQWAASTGNDSVPY 405
           DG     L +  G  Q+A      + PY
Sbjct: 396 DGYDWVMLPNVLGMSQYADGGRMTTKPY 423


>gi|332560688|ref|ZP_08415006.1| Deoxyribodipyrimidine photolyase-related protein [Rhodobacter
           sphaeroides WS8N]
 gi|332274486|gb|EGJ19802.1| Deoxyribodipyrimidine photolyase-related protein [Rhodobacter
           sphaeroides WS8N]
          Length = 508

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 132/403 (32%), Gaps = 62/403 (15%)

Query: 21  TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80
            D  AL AA   +D  V+A  +     +  H    ++   I A++ +  + L ++G    
Sbjct: 14  DDLPALRAADPAADLVVMA-EVMEEGTYVPHH--PQKIALILAAMRKFARRLQERGFRLA 70

Query: 81  YHQCSNFDDSIEWLDSYCL---QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF- 136
           Y +  + +              +    ++   R         D  L   L+   +   F 
Sbjct: 71  YSRLDDAETGPSIGAELLRRAEETGAREVIATR-------PGDWRLIAALEALPLPVRFL 123

Query: 137 -DDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------------------------- 168
            DD  L P       A    ++   +    ++                            
Sbjct: 124 PDDRFLCPAEEFARWAEGRKQLRMEWFYREMRRRTGLLMEGDEPAGGKWNFDAENRRPAA 183

Query: 169 ---LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
              L    LR  P   +R    +  +  PR F    +     +P     AL  L  F +E
Sbjct: 184 PDLLRPRPLRFEPDAEVRAVLDLVEARFPRHF---GRLRPFHWPTDRAEALQALDHFIQE 240

Query: 226 KVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
            +  + +++D           + LS  +++G+L P +   R + E+ D    P +    +
Sbjct: 241 SLPRFGDEQDAMLADDPFLSHALLSSSMNLGLLGPMEVCRRAETEWRDGRA-PLNAVEGF 299

Query: 282 LNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           + + L WRE+ R + A      M    +  +  +        L   K   T    + AA+
Sbjct: 300 IRQILGWREYVRGIWALSGPDYMRSNGLGHSAALP------PLYWGKP--TRMACLSAAV 351

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            Q   + + H+  R++          VD     E+++S  +D 
Sbjct: 352 AQTRDLAYAHHIQRLMVTGNFALLAGVDPAEVHEWYLSVYIDA 394


>gi|331013408|gb|EGH93464.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 469

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 133/418 (31%), Gaps = 71/418 (16%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFY 108
               ++   I++++    ++L ++G+  QY    +          L  +    +  +L  
Sbjct: 2   PHHPQKIVLIFSAMRHFAEALRERGVRVQYVTLDDPQNTGSVPGELRRWQALLQAKELHV 61

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS---------------------- 146
               +    R ++ ++      +  + + D+  L                          
Sbjct: 62  TECGDW---RLEQSIK---DSGLPIQWYADTRFLCSREEFSSWAQGKKQLRMEFFYREMR 115

Query: 147 -----ILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSNIPRFFDY 199
                +LN           F     + L +      P+   A  +T  V      RF  +
Sbjct: 116 RKSRLLLNGDGTPVGGAWNFDAENRKALPKGVAAPYPMRFSADGITRDVLTLVAERFASH 175

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLS 255
                D  +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L 
Sbjct: 176 YGSLDDFDYPVTHVDAQALWDYFLDFGLACFGDYQDAMATDEPFMFHARISAALNIGLLD 235

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEK 313
            RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F      
Sbjct: 236 LRQICSDVESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPEYADGNLFG----- 289

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIG 372
                   L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I 
Sbjct: 290 ----NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPSQIC 345

Query: 373 EEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           E Y    +   D     +  G    A      S PY                G +I+ 
Sbjct: 346 EWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 390


>gi|119713715|gb|ABL97765.1| hypothetical protein MBMO_EB0-41B09.0035 [uncultured marine
           bacterium EB0_41B09]
          Length = 508

 Score = 56.9 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 95/267 (35%), Gaps = 22/267 (8%)

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
               + +   +  RK    +    +          L   +   NI  F +   Q  +  +
Sbjct: 169 KPIGEKWNFDSDNRKRWDGSPNTTEDFRPSHNHEELFLEINNENIEHFGE--SQETNFRW 226

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLK 264
           PI  + ++ +L  F  + +  + + +D    +      S LS  L+  ++SP +   + +
Sbjct: 227 PISREESVKLLDNFIAKDLVNFGDFQDALHDKNWRLFHSFLSFSLNSKMISPLEVIRKAE 286

Query: 265 EEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           E + +  + P S    ++ + L WRE+ R    A  P       F           ++ L
Sbjct: 287 EAYYEKDL-PLSSVEGFIRQILGWREYIRGVYWANMPGYDQHNFFK---------HNAKL 336

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
              +  G T    +  ++ Q     + H+  R++          +D +   ++++   +D
Sbjct: 337 PDWFWTGKTDMRCLSLSITQSLKNAYAHHIQRLMIIGNFSLLAGLDPKEVHKWYLGIYID 396

Query: 383 GD----LASNNGGWQWAASTGNDSVPY 405
                 + +  G  Q+A      + PY
Sbjct: 397 AYEWVEMPNTLGMSQFADGGLLATKPY 423


>gi|318057368|ref|ZP_07976091.1| hypothetical protein SSA3_05476 [Streptomyces sp. SA3_actG]
 gi|318080957|ref|ZP_07988289.1| hypothetical protein SSA3_30741 [Streptomyces sp. SA3_actF]
          Length = 504

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 15/208 (7%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQ---GTSQLSPYLSIGVLSPRQCWNR 262
           +FP   + A   LR+F   ++  +    D + A       S LS  L++G+L P +C   
Sbjct: 222 LFPATRREARSALRRFVAHRLAGFGPYEDAMLAADPVLSHSLLSAPLNLGLLDPAECAEL 281

Query: 263 LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            +  + +    P +    ++ ++  WRE+   L   +         +  T  +       
Sbjct: 282 AEHAYRE-GEAPLNSVEGFVRQVAGWREYVWQLYWHFGEEYRELNALRHTAPLP-----E 335

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
              +   G      +   + Q+   GW H+  R++           D     ++F    +
Sbjct: 336 WFLSLDAGAVTANCLSTVLAQVRDTGWTHHIPRLMILGSRALQDGWDPAAVTDWFHRCFV 395

Query: 382 DGD----LASNNGGWQWAASTGNDSVPY 405
           DG     L +  G  Q+A      + PY
Sbjct: 396 DGYDWVMLPNVLGMSQYADGGRMTTKPY 423


>gi|84623418|ref|YP_450790.1| hypothetical protein XOO_1761 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84367358|dbj|BAE68516.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 525

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 122/395 (30%), Gaps = 56/395 (14%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
           A++   I+A++      L + G   +Y      SN       L++     R  +L Y   
Sbjct: 60  AQKVLAIFAAMRAFAAGLRRDGHRVRYVTIDNASNRQSIPHNLEALMAHYRADRLDYQ-- 117

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSI--LNHALQMYKVYTPFRKALIQ 167
              +E R D+ L+     +       D    L     +     A   +++   +R+   Q
Sbjct: 118 -APDEWRLDEALQHWSAAQPFATRMLDSEHFLTARNEVAACFRAGSPWRMDVFYRRMRRQ 176

Query: 168 NLVQADLRSLP----------VPAIRLTGPVTPSNIPRFFDYPF---------------- 201
           + +  D    P            A     P  P +     D+                  
Sbjct: 177 HRILLDAAGEPEGGRWNFDHDNRAPWPGDPPAPRDWRATHDHSALWRTIEAAGVRSFGAP 236

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPR 257
            A    +P+  + AL  L  F  + +  +    D  + +      S LS  L++ +L PR
Sbjct: 237 NAQALPWPVDREEALQHLDAFIADALPDFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPR 296

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIE 315
           +   R +  +      P +    ++ + L WRE+ R +     P                
Sbjct: 297 EVIARAEAAWRQ-GHAPLAAVEGFIRQILGWREYVRGVYWSQMPGYADLNHLDQHAPLPH 355

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  D         G  G   +  A+         H+  R++          +D +    +
Sbjct: 356 WFWD---------GQIGMRCLADAVGNSLANAHAHHIQRLMVIGNFALLAGLDPQALHRW 406

Query: 376 FMSQLLDGD----LASNNGGWQWAASTGNDSVPYF 406
           ++   +D      L +  G  Q+A      S PY 
Sbjct: 407 YLGVYIDAFEWVELPNTVGMSQFADGGLLGSKPYI 441


>gi|163744678|ref|ZP_02152038.1| hypothetical protein OIHEL45_03805 [Oceanibulbus indolifex HEL-45]
 gi|161381496|gb|EDQ05905.1| hypothetical protein OIHEL45_03805 [Oceanibulbus indolifex HEL-45]
          Length = 508

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 68/394 (17%), Positives = 131/394 (33%), Gaps = 52/394 (13%)

Query: 26  LYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS 85
           L AA    D  V+A      E  R H    ++S  ++A++ +  ++L + G   +Y +  
Sbjct: 19  LRAADKARDVVVMAEVAQEAEYVRHH---PKKSALVFAAMRKFARALEEGGWTLRYTRLD 75

Query: 86  NFDDS---IEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL- 141
           + +++   +  L     +    ++      E  E R    L        I    DD  + 
Sbjct: 76  DPENAGSLVGELLRRAEETGAGEVVV---TEPGEWRLINTLTHAPTPTQILP--DDRFIA 130

Query: 142 ----LPPGSILNHALQMYKVYTPFR-----------KALIQNLVQADLRSLPVPAIRLTG 186
                   +    AL+M   Y   R            A  +     D R  P   +    
Sbjct: 131 SRKRFEDWAEGRKALRMEYFYREMRRETGLLMEGDDPAGGKWNFDHDNRKPPKEGLEFPA 190

Query: 187 PVT---PSNIPRFFDY-------PFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRD 235
           P+T    +      D         F  ++P       + AL +L  F  + +  + + +D
Sbjct: 191 PLTFAPDAETQAVLDLVGARYGDNFGDLEPFDLATTREEALQVLAYFIAQALPRFGDYQD 250

Query: 236 IPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREF 290
                      + +SPYL++G+L P +   R  E+       P + A  ++ + L WRE+
Sbjct: 251 AMMQDQPYLFHALISPYLNLGLLGPMEV-CRAAEKAWQEGAVPINAAEGFIRQILGWREY 309

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R +               + E+     D  L   +    T    +  A+ Q     + H
Sbjct: 310 VRGIYFLEGP--------EYVERNVLQHDRDLPAFYWGAETQMNCLRQAIGQTRKYAYAH 361

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           +  R++          +D     E+++    D  
Sbjct: 362 HIQRLMVTGNFALLAGIDPHQVHEWYLEVYADAY 395


>gi|28900059|ref|NP_799714.1| hypothetical protein VPA0204 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362252|ref|ZP_05775231.1| cryptochrome/photolyase [Vibrio parahaemolyticus K5030]
 gi|260880634|ref|ZP_05892989.1| cryptochrome/photolyase [Vibrio parahaemolyticus AN-5034]
 gi|260896589|ref|ZP_05905085.1| cryptochrome/photolyase [Vibrio parahaemolyticus Peru-466]
 gi|28808342|dbj|BAC61547.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086798|gb|EFO36493.1| cryptochrome/photolyase [Vibrio parahaemolyticus Peru-466]
 gi|308091734|gb|EFO41429.1| cryptochrome/photolyase [Vibrio parahaemolyticus AN-5034]
 gi|308115615|gb|EFO53155.1| cryptochrome/photolyase [Vibrio parahaemolyticus K5030]
          Length = 514

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 60/397 (15%), Positives = 126/397 (31%), Gaps = 59/397 (14%)

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR--QYEINEVRRDKLLEKR 126
           ++      +       + FDD  + L  Y  +   +K  Y R  +Y + E      LE  
Sbjct: 63  KQEEGHHVLHLTLDDTAAFDDLDQVLQHYVREVGASKFEYQRPDEYRLLEQLTKLKLESV 122

Query: 127 LQHRVICKSF-----DDSVLLPPG----------------SILNHALQMYKVYTPFRKAL 165
           ++  V  + F     +     P G                 IL    +       +    
Sbjct: 123 VKRCVDTEHFLLPFAEIEQQFPQGKHVMMEHFYRRMRKRFDILMQDGKPVGEKWNYDANN 182

Query: 166 IQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKF 222
              L   D+  LP P   ++ +   V      +         D ++P+    +L +L  F
Sbjct: 183 RNKLKVKDIEQLPKPLMFSLNVDEIVERLTRHKISTIGSLNGDLLWPVNRAQSLSLLAHF 242

Query: 223 CKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPK 275
           C+  + ++   +D   ++         S+LS  ++  +L P++  +     +        
Sbjct: 243 CQVCLRHFGRFQDAMTVEHESKWSLYHSRLSFSMNSKLLHPKEVIDAALSAYQSNKHIDI 302

Query: 276 SGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFP 334
           +    ++ + L WREF R +           P  P   + E ++D         G T   
Sbjct: 303 AQVEGFIRQILGWREFIRGVYWA------NMPQYPQKNEFEASRDLPDYFWT--GKTKM- 353

Query: 335 IIDAAMR----QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNG 390
              A MR    Q     + H+  R++          ++    + +++   +D        
Sbjct: 354 ---ACMRNTIGQSLDYAYAHHIQRLMVTGNFCLLTEMNPDQVDAWYLGIYVDA------- 403

Query: 391 GWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
             +W        +  F      +  K +   G++I+ 
Sbjct: 404 -IEWVEMPNTRGMALF-ADGGIVGTKPYAASGSYIKK 438


>gi|329902625|ref|ZP_08273184.1| putative alpha-deoxyribodipyrimidine photolyase-like protein
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548683|gb|EGF33328.1| putative alpha-deoxyribodipyrimidine photolyase-like protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 512

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 70/451 (15%), Positives = 142/451 (31%), Gaps = 70/451 (15%)

Query: 22  DNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81
           DN AL         +   V I    +         +     +++     +L ++G  F Y
Sbjct: 16  DNPAL---ADFDPQRDAVVMIEAASEGMAVWSHKARITLFLSAMRHFALALGERGWPFIY 72

Query: 82  HQCSNF--DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ-HRVICKSFDD 138
            +  +    D    L +   + +   L+     +  E R  ++LE+  +      +  DD
Sbjct: 73  LKLDDPLPGDFAARLGAVLAEHQPLALYV---ADPGEWRMQQMLEQVCEISATPLRVIDD 129

Query: 139 -SVLLPPGSILNHALQMYKVYTPFRKALIQN--------------------------LVQ 171
              L         A    ++   F   +++                             +
Sbjct: 130 THFLCSRSEFATWAKGKKELRMEFFYRVMRKKHQVLMSGEQPEGGEWNYDAENRSAFPKR 189

Query: 172 ADLRSLPVPAIRLTGPVTPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKV 227
                +P PA  +   +T   I      F D+P      ++P+    AL  L  F   ++
Sbjct: 190 TGPGVIPPPARFVPDAITQEVIALVETEFTDHPGSTDQFIWPVDRAQALQALDAFIATRL 249

Query: 228 YYYVEQRDIPAIQGTSQLSPY------LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
             +   +D  A+   +    +      L++ +LSP +     +  +    + P + A  +
Sbjct: 250 AGFGTYQD--AMWTDTPFGWHALLSSSLNLHLLSPAEVIAAAEAAYRSGAV-PLASAEGF 306

Query: 282 LNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           + + L WREF R +                   +           +  G TG   +  A+
Sbjct: 307 IRQILGWREFIRGVYWLDMPGMKQANHYDHQRALP--------GFYWTGDTGMACMKDAI 358

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAA 396
            Q    G+ H+  R++          +  +   +++++  +D     +L +  G    A 
Sbjct: 359 GQTLKHGYAHHIQRLMVTGNFALLAELSPQQVSDWYLAVYVDAVEWVELPNVAGMALHAL 418

Query: 397 STGNDSVPYF-------RIFNPTIQGKRFDP 420
                S PY        R  N    G R+DP
Sbjct: 419 GNRFTSKPYISSGAYIKRQSN-YCSGCRYDP 448


>gi|99082121|ref|YP_614275.1| deoxyribodipyrimidine photolyase-related protein [Ruegeria sp.
           TM1040]
 gi|99038401|gb|ABF65013.1| deoxyribodipyrimidine photolyase-related protein [Ruegeria sp.
           TM1040]
          Length = 507

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 121/394 (30%), Gaps = 51/394 (12%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL AA    D  V+A  +     +  H    ++   + A++ +  + L  +G    Y + 
Sbjct: 18  ALKAADPAHDVVVMA-EVMDEGTYVPHH--PKKIALVLAAMRKFAQRLEGQGWRVAYRRL 74

Query: 85  SN--FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL 142
                +  +  L     +   +++         E R    L+     +V   + DD  L 
Sbjct: 75  DEDGAESIVGELLRRAEEFGASEVLA---TTPGEWRLIHALKYA-PLKVHFHA-DDRFLA 129

Query: 143 PPGSILNHALQMYKVYTPFRKALI----------------QNLVQADLRSLPVPAIRLTG 186
                   A    ++   +   L+                +    ++ R  P   I   G
Sbjct: 130 TREDFTEWAEGKKQLRMEYFYRLMRKKTGLLMEGDTPVGGKWNYDSENRKAPPKIIDHKG 189

Query: 187 PVTPSNIPRFFDY----------PFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235
           P          +            F  + P +     + A   L  F    +  + + +D
Sbjct: 190 PPRFEPDAEVEEVLDLVEARFGTHFGDLRPFWFATTREEAQEALAHFITHALPQFGDYQD 249

Query: 236 IPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREF 290
                      S LSPYL+IG+L+P +      E        P +    ++ + L WRE+
Sbjct: 250 AMMTDERWLYHSILSPYLNIGLLTPLEI-CEAAEVAHQDGHAPLNAVEGFIRQILGWREY 308

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R +          +  +  T  +        L    +  T    +  A+ Q     + H
Sbjct: 309 VRGIYFLEGEDYPTRNALEQTRALP------ALYWGAE--TDMHCLSQAVEQTGQEAYAH 360

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           +  R++          VD     E++++   D  
Sbjct: 361 HIQRLMVTGNFALLAGVDPAQVHEWYLAVYADAF 394


>gi|291296545|ref|YP_003507943.1| deoxyribodipyrimidine photolyase-related protein [Meiothermus ruber
           DSM 1279]
 gi|290471504|gb|ADD28923.1| deoxyribodipyrimidine photolyase-related protein [Meiothermus ruber
           DSM 1279]
          Length = 498

 Score = 56.6 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 38/232 (16%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           +P+  Q AL  L  F + ++  +   +D    Q      S LSP +++G+L P++   R 
Sbjct: 215 WPVTRQEALQALEDFVQHRLAQFGPYQDALLEQSWSLHHSLLSPVINLGLLHPQEVVERA 274

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             E+    I P +    ++ ++I WRE+  H+           P +    +++ ++    
Sbjct: 275 LLEYEKGGI-PLASIEGFVRQIIGWREYIYHVYR------REMPGLGQANQLDAHRPLPP 327

Query: 323 LQAWKQGYTGFPIIDAAMRQL-------NTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           L                MR L          G+ H+  R++  +       V+ +    +
Sbjct: 328 LFWGAPTR---------MRCLSTVIERVRQRGYAHHIERLMVLANFALLYGVNPQALNAW 378

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           F++  +D         W  A +     V       P +  K +   G +I  
Sbjct: 379 FIAAFVDSAD------WVMAPNVLGMGV----FATPVLSSKPYAASGKYIAR 420


>gi|114569551|ref|YP_756231.1| deoxyribodipyrimidine photolyase-like protein [Maricaulis maris
           MCS10]
 gi|114340013|gb|ABI65293.1| deoxyribodipyrimidine photolyase-related protein [Maricaulis maris
           MCS10]
          Length = 511

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 80/219 (36%), Gaps = 16/219 (7%)

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP-MFPIGEQNALHILRKFCKEKVYYY 230
              R   V    +T  V      RF D  F  I+P  F +    A   L  F    +  +
Sbjct: 196 FMPRPHAVEPDAVTQSVIALVASRFPD-GFGDIEPFRFAVTRVGAEAALDHFIDTALADF 254

Query: 231 VEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
              +D      A    S LS Y++IG+L P    +R++  +      P + A  ++ ++I
Sbjct: 255 GHYQDAMLAGEAFLYHSLLSAYINIGLLDPLAVCHRVEAAWRAGRA-PLNAAEGFIRQII 313

Query: 287 -WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
            WRE+ R +        + +  +  T  +         + +  G T    + A + Q   
Sbjct: 314 GWREYVRGIYWREGPDYVRRNALKATRPLP--------EFYWTGETDMACLAATIDQTRR 365

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
             + H+  R++          +D     E++++  +D  
Sbjct: 366 EAYAHHIQRLMVTGTFAMIAGIDPHAVHEWYLAVYIDAF 404


>gi|71735364|ref|YP_273975.1| deoxyribodipyrimidine photolyase-like protein [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71555917|gb|AAZ35128.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 512

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/424 (15%), Positives = 135/424 (31%), Gaps = 71/424 (16%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQR 102
           E+        ++   I++++    ++L ++G+  QY    +          L  +    +
Sbjct: 39  EEASHVPHHPQKIVLIFSAMRHFAEALRERGVRVQYVTLDDPQNTGSVPGELRRWQALLQ 98

Query: 103 VTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS---------------- 146
             +L      +    R ++ ++      +  + + D+  L                    
Sbjct: 99  AKELHVTECGDW---RLEQSIK---DSGLPIQWYADTRFLCSREEFSSWAQGKKQLRMEF 152

Query: 147 -----------ILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSNI 193
                      +LN           F     + L +      P+   A  +T  V     
Sbjct: 153 FYREMRRKSRLLLNGDGTPVGGAWNFDAENRKALPKGVAAPYPMRFSADGITRDVLTLVA 212

Query: 194 PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYL 249
            RF  +     D  +P+   +A  +   F    +  + + +D  A        +++S  L
Sbjct: 213 ERFASHYGSLDDFDYPVTHVDAQALWDYFLDFGLAGFGDYQDAMATDEPFLFHARISAAL 272

Query: 250 SIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPF 307
           +IG+L  RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F
Sbjct: 273 NIGLLDLRQICSDVESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPEYADGNLF 331

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLL 366
                         L + +  G T    +  A+ Q     + H+  R++   +F +   +
Sbjct: 332 G---------NSRPLPEFYWTGETMMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGI 382

Query: 367 VDWRIGEEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           V  +I E Y    +   D     +  G    A      S PY                G 
Sbjct: 383 VPNQICEWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQ 429

Query: 424 FIRH 427
           +I+ 
Sbjct: 430 YIKR 433


>gi|166712825|ref|ZP_02244032.1| hypothetical protein Xoryp_15605 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 525

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 121/395 (30%), Gaps = 56/395 (14%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
           A++   I+A++      L + G   +Y      SN       L++     R  +L Y   
Sbjct: 60  AQKVLAIFAAMRAFAAGLRRDGHRVRYVTIDNASNRQSIPHNLEALMAHYRADRLDYQ-- 117

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSI--LNHALQMYKVYTPFRKALIQ 167
              +E R D+ L+     +       D    L     +     A   +++   +R+   Q
Sbjct: 118 -APDEWRLDEALQHWSAAQPFATRMVDSEHFLTARNEVAACFRAGSPWRMDVFYRRMRRQ 176

Query: 168 NLVQADLRSLP----------VPAIRLTGPVTPSNIPRFFDYPF---------------- 201
           + +  D    P            A     P  P +     D+                  
Sbjct: 177 HRILLDAAGEPEGGRWNFDHDNRAPWPGDPPAPRDWRAMHDHSALWRTIKAAGVRSFGAP 236

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPR 257
            A    +P+  + AL  L  F  + +  +    D  + +      S LS  L++ +L PR
Sbjct: 237 NAQALPWPVDREEALQHLDAFIADALPDFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPR 296

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIE 315
           +   R +  +      P +    ++ + L WRE+ R +     P                
Sbjct: 297 EVIARAEAAWRQ-RHAPLAAVEGFIRQILGWREYVRGVYWSQMPGYADLNHLDQHAPLPH 355

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  D         G  G   +  A+         H+  R++          +  +    +
Sbjct: 356 WFWD---------GQIGMRCLADAVGNSLANAHAHHIQRLMVIGNFALLAGLAPQALHRW 406

Query: 376 FMSQLLDGD----LASNNGGWQWAASTGNDSVPYF 406
           ++   +D      L +  G  Q+A      S PY 
Sbjct: 407 YLGVYIDAFEWVELPNTVGMSQFADGGLLGSKPYI 441


>gi|260548947|ref|ZP_05823169.1| photolyase [Acinetobacter sp. RUH2624]
 gi|260408115|gb|EEX01586.1| photolyase [Acinetobacter sp. RUH2624]
          Length = 507

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 20/208 (9%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRL 263
           +    QNAL  L  F    + ++ + +D           S LSPYL+ G+L P++  +  
Sbjct: 227 WATTRQNALLALDDFISNNLTHFGDYQDAMVYGSDFMFHSLLSPYLNCGLLLPKEICDAA 286

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAF-YPSVCMGKPFIPWTEKIEWNKDSH 321
           +  + +    P +    ++ + L WRE+ R +     P           T          
Sbjct: 287 QTAYYNGQA-PLNAVEGFIRQILGWREYVRGIYWLSMPDYSDQNTLHATT---------P 336

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           L Q +  G T    +    R     G+ H+  R++          V+     E++++  +
Sbjct: 337 LPQYYWTGDTKMACMAECFRTTFEHGYAHHIQRLMITGNFALLAGVNPSEICEWYLAVYV 396

Query: 382 DGD----LASNNGGWQWAASTGNDSVPY 405
           D      L +  G   +A      S PY
Sbjct: 397 DAYEWVELPNTLGMAMYADGGIMASKPY 424


>gi|148980021|ref|ZP_01815842.1| hypothetical protein VSWAT3_06801 [Vibrionales bacterium SWAT-3]
 gi|145961464|gb|EDK26768.1| hypothetical protein VSWAT3_06801 [Vibrionales bacterium SWAT-3]
          Length = 519

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 117/370 (31%), Gaps = 52/370 (14%)

Query: 57  QSHFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +    ++++    + L+Q+G   +       + F D    L  Y  +    K  Y R  E
Sbjct: 48  KVAAFFSAMGYFAEELTQRGHQVLHLTLDDTAQFKDLDAVLQHYTNEFNAEKFEYQRPDE 107

Query: 114 INEVRRDKLL-----------------------EKRLQHRVICKSFDDSVLLPPGSILNH 150
              + +   L                       E+  + + I        +     IL  
Sbjct: 108 YRLLEQLNKLKLPNTFKGSCDSEHFMFPFSEIEEQFPKDKHIMMEHFYRRMRKRFDILLD 167

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPM 207
             +       +     + L + D+ +LP P   A  ++  +      +           +
Sbjct: 168 DGKPVGGKWNYDANNRKKLKKQDIENLPQPLMFANDISPILERIERHQVVTIGQVGDQLL 227

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPRQCW 260
           +P+    +L +L  FC+  +  +   +D   ++         S+LS  L+  +LSP +  
Sbjct: 228 WPVNRAQSLSLLAHFCQVCLPLFGHFQDAMTVEHDSKWSLYHSRLSFSLNSKLLSPNEVI 287

Query: 261 NRLKEEFVDLLIKPK-----SGAFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEK 313
           +     +     +       +    ++ + L WRE+ R    A  P+      +      
Sbjct: 288 DAALSAYHASSKQGAPTIDIAQVEGFIRQILGWREYIRAVYWANMPAYATKNHY------ 341

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
              + D  L   +  G T    +  A+ Q     + H+  R++          +     +
Sbjct: 342 ---SADRALPHYFWDGQTQMNCMKHAIDQSLKYAYAHHIQRLMVTGNFCLITGIAPDQVD 398

Query: 374 EYFMSQLLDG 383
            +++   +D 
Sbjct: 399 GWYLGIYVDA 408


>gi|258623158|ref|ZP_05718168.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584550|gb|EEW09289.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 516

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 83/258 (32%), Gaps = 28/258 (10%)

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS----NIP 194
           S L+ P        +       F       L   DL +LP P +R   P++         
Sbjct: 163 SYLMEPD------GKPEGGQWNFDADNRNKLKAQDLLNLPAP-LRFDNPISSIKARLERH 215

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSP 247
                       ++PI    AL +L  FC+  +  +   +D    +         S+LS 
Sbjct: 216 GIESMGRVGDSLLWPINRAQALSLLAHFCQLCLPNFGRFQDAMTAKHPHSWSLYHSRLSF 275

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGK 305
            L+  +LSPR+      E +         +    ++ + L WRE+ R +          +
Sbjct: 276 ALNCKLLSPREVIETAIETYRVAQGGISLAQIEGFVRQILGWREYVRGMYWSNMPSYKTR 335

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             +     +           +  G T    +  A+ Q    G+ H+  R++         
Sbjct: 336 NHLQALRPLP--------GYFWHGQTHMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLT 387

Query: 366 LVDWRIGEEYFMSQLLDG 383
             +    + +++   +D 
Sbjct: 388 ECNPDQVDAWYLGIYIDA 405


>gi|163759427|ref|ZP_02166512.1| hypothetical protein HPDFL43_08747 [Hoeflea phototrophica DFL-43]
 gi|162283024|gb|EDQ33310.1| hypothetical protein HPDFL43_08747 [Hoeflea phototrophica DFL-43]
          Length = 519

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 69/183 (37%), Gaps = 16/183 (8%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRL 263
           +P+  ++A   L+ F    +  + + +D           S LS  ++ G+L PR C  R 
Sbjct: 235 YPVSGEDAQSYLQWFINNGLPGFGDWQDAMKQDEPLLFHSHLSALINCGLLDPRLCCERA 294

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSH 321
           +E + +    P +    ++ ++I WREF R +     P                 +    
Sbjct: 295 EEAWRN-GNAPLNAVEGFVRQIIGWREFIRGVYWLKMPDYAHANAL---------SASRP 344

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           L   +  G TG   +  ++ +     + H+  R++          +D R  +E+F+    
Sbjct: 345 LPDFFWTGETGMNCLAQSISETRANAYAHHIQRLMVIGNFCLLAGIDPRDVQEWFLIVYF 404

Query: 382 DGD 384
           D  
Sbjct: 405 DAY 407


>gi|187234362|gb|ACD01433.1| DNA photolyase I [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|187234370|gb|ACD01437.1| DNA photolyase I [Plusia acuta nucleopolyhedrovirus]
          Length = 247

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 66/203 (32%), Gaps = 13/203 (6%)

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKEKV 227
           ++Q   +S+          +  SN+    +         +   G   A+  L  F +  +
Sbjct: 42  VIQHPYKSVVSIESSTNTSIDWSNLLSSRNVDHSVKRIKWTEAGYNAAILRLATFIQCYI 101

Query: 228 YYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI--------KPKSGAF 279
           Y Y      P     S LSP+   G +S ++    L+       +        K K+   
Sbjct: 102 YNYKNSIHNPVSSKQSDLSPFFHFGFISAQRVIYHLRFCVTKKSVLQKTVFIRKLKNNIE 161

Query: 280 SWLNELIWR----EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
            ++   ++R    + + +    Y +     P I           ++ L   +   T   I
Sbjct: 162 KFIENCLYRREFADNFCYFNLNYITFNAASPQIKRYIAKHLRYYTYSLNELEYSQTHDNI 221

Query: 336 IDAAMRQLNTIGWMHNRLRMITA 358
            + A   L   G ++  +R+  A
Sbjct: 222 WNKAQEDLRENGKIYPFIRVYWA 244


>gi|330986128|gb|EGH84231.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 469

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 100/293 (34%), Gaps = 35/293 (11%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSNIPRFFDYPFQAI 204
           +LN           F     + L +      P+   A  +T  V      RF  +     
Sbjct: 121 LLNGDGTPVGGAWNFDAENRKALPKGVAAPYPMRFSADGITRDVLTLVAERFASHYGSLD 180

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCW 260
           D  +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L  RQ  
Sbjct: 181 DFDYPVTHVDAQALWDYFLDFGLAGFGDYQDAMATDEPFLFHARISAALNIGLLDLRQIC 240

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNK 318
           + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F           
Sbjct: 241 SDVESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPEYADGNLFG---------N 290

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIGEEYFM 377
              L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I E Y +
Sbjct: 291 SRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPSQICEWYLV 350

Query: 378 SQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
             +   D     +  G    A      S PY                G +I+ 
Sbjct: 351 IYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 390


>gi|92113024|ref|YP_572952.1| deoxyribodipyrimidine photolyase-related protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91796114|gb|ABE58253.1| deoxyribodipyrimidine photolyase-related protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 524

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 114/371 (30%), Gaps = 50/371 (13%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD---SIEWLDSYCLQQRVTKLFY 108
               ++   + A++      L Q+G    Y    + D+    I   +    +Q   ++  
Sbjct: 42  PHHPQKIAMMLAAMRHFAAELRQRGYRVHYSTLDDPDNRHSLIAEAERLAKRQGCDEIHV 101

Query: 109 NRQYEINEVRRDKLLEKRLQHRVI--------CKSFDDSVLLPPGSILNHALQMYKVYTP 160
            R     E R  K +E R               + F                +M   Y  
Sbjct: 102 TR---PGEWRLLKAMEARQAQDRTPRWRIVEDTRFFCSHRDFDAWMEGRKRPRMEDFYRM 158

Query: 161 FRKALI-----------QNLVQADLRSLPVPAIR-----------LTGPVTPSNIPRFFD 198
            R+              Q     D R+    A             +T  V      RF D
Sbjct: 159 LRRRTGLLMDGNAPVGGQWNFDRDNRAPIDDAPSPPSPPRHRQDAVTREVLALVEKRFAD 218

Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVL 254
           +  +     +P+  + AL  LR F    +  +   +D  +        S+LS  L+IG+L
Sbjct: 219 HVGRLEGFNWPVTRRQALADLRHFVARALPAFGTYQDAISDTAPYLFHSRLSAALNIGLL 278

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEK 313
           SP +     ++ +      P +    ++ + L WRE+ R +          +  +  T  
Sbjct: 279 SPGEVCEAAQDAW-QGGEAPLNAVEGFIRQILGWREYVRGIYWHRMPAYKRENQLGATRG 337

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
           +         + +  G T    +  A+   +   + H+  R++          V      
Sbjct: 338 LP--------RCYWDGDTDLRCLQRAIEMTHDNAYAHHIQRLMVTGNFALLCDVRPAALC 389

Query: 374 EYFMSQLLDGD 384
           +++++   D  
Sbjct: 390 DWYLAVYADAC 400


>gi|170078893|ref|YP_001735531.1| hypothetical protein SYNPCC7002_A2298 [Synechococcus sp. PCC 7002]
 gi|169886562|gb|ACB00276.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
          Length = 511

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 13/183 (7%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRD-IPAIQGT---SQLSPYLSIGVLSPRQCWNRL 263
           + +    AL +   F    +  +   +D +   + T     +SPYL++G+L P +   + 
Sbjct: 222 WAVTRTQALQVFEHFLATGLEKFGTFQDAMVTGEYTLWHGLISPYLNLGLLHPWELIKKA 281

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
            E   +      +    ++ + L WRE+   L  +  +    K      + +        
Sbjct: 282 -EAIREQKAIALNNLEGFIRQILGWREYLHGLYHYVGADYAQKNHFNHQQPLPD------ 334

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
              W    T    +   ++Q+   G+ H+  R++  S     L V  +  E +F +  +D
Sbjct: 335 -FYWDSRKTDLNCLKQVLQQVEQTGYAHHIQRLMILSNFALILGVKPQALEAWFHAAFID 393

Query: 383 GDL 385
              
Sbjct: 394 AYD 396


>gi|114045939|ref|YP_736489.1| deoxyribodipyrimidine photolyase-like protein [Shewanella sp. MR-7]
 gi|113887381|gb|ABI41432.1| deoxyribodipyrimidine photolyase-related protein [Shewanella sp.
           MR-7]
          Length = 525

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 113/364 (31%), Gaps = 53/364 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW---LDSYCLQQRVTKLFYNRQYEINEV 117
            ++++ Q    L   G   +Y    +  D ++    L  Y  Q    K  Y R    +E 
Sbjct: 63  FFSAMAQFASELGAAGHQVRYLTLDDTHDFVDLNALLQHYVAQTGAIKFEYQR---PDEY 119

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGS--------------------------ILNHA 151
           R    L +      +    D    L P                            IL   
Sbjct: 120 RLLAQLSQLKLANAVVNCVDTEHFLFPFDAIDREFPQGQHRLMEHFYRRMRKRFNILMTD 179

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMF 208
            +       F     Q L   D++SLP P +    +   +                  ++
Sbjct: 180 GKPVGGQWNFDANNRQKLKSQDIKSLPTPLMFGHNVEDILERLTRHGINTMGKADTRLLW 239

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPRQCWN 261
           PI    +L +L+ FC+  +  +   +D    Q         S+LS  L+  ++SP +  N
Sbjct: 240 PINRVQSLELLQYFCEYCLPAFGRFQDAMTQQHPAQWSLYHSRLSFSLNAKLISPLEVIN 299

Query: 262 RLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNKD 319
            + E +        +    ++ + L WRE+ R +  A  PS           +       
Sbjct: 300 AVIEHYHANPFIEIAQVEGFVRQILGWREYVRGIYWANMPSYASINALEATRK------- 352

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
             L   +  G T    +  A+ Q     + H+  R++          +     +++++  
Sbjct: 353 --LPDYFWHGKTRMNCLRHALSQSLDYAYAHHIQRLMVIGNFCLLTEIAPDEVDKWYLGV 410

Query: 380 LLDG 383
            +D 
Sbjct: 411 YVDA 414


>gi|323137270|ref|ZP_08072349.1| deoxyribodipyrimidine photolyase-related protein [Methylocystis sp.
           ATCC 49242]
 gi|322397628|gb|EFY00151.1| deoxyribodipyrimidine photolyase-related protein [Methylocystis sp.
           ATCC 49242]
          Length = 526

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 110/362 (30%), Gaps = 43/362 (11%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +  FI A++    + L  +G+V  Y +  +     D    L     + +  ++      E
Sbjct: 48  KIAFILAAMRHFAQELRAEGLVVDYVRLDDPENRGDFTGELARAVARHKPDRIVVTEPGE 107

Query: 114 INEVRRDKLLEKRLQHRVICKS----FDDSVLLPPGSILNHALQMYKVYTPFRKAL---- 165
                        L   V  +     F         +     L+M   Y   R+      
Sbjct: 108 WRVREMMLGWAAMLGLPVEIRDDDRFFCSRADFSRWAGRRETLRMEFFYRDMRRRTGLLM 167

Query: 166 --------IQNLVQADLRSLPVPAIRLTGP----------VTPSNIPRFFDYPFQAIDPM 207
                     N    + + LP        P          +      R+ ++        
Sbjct: 168 EGDAPVGGRWNFDPENRKPLPAKFRAPQRPRFAPDDTTREILKLTATRYAEHFGDLEPFG 227

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRL 263
           + +   +A   L  F    + ++ + +D           + LSPYL++G+L+PR+     
Sbjct: 228 WAVTRADARIALDDFIANCLPFFGDFQDAMKSGEPFLYHAILSPYLNVGLLTPREICVAA 287

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           +  ++     P +    ++ + L WRE+ R +             +  T  + W      
Sbjct: 288 ERAYLS-GAAPINAVEGFIRQILGWREYVRGIYWLRMPEYAETNALDATRPLPW------ 340

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
              +  G T    +   + +     + H+  R++          V  R  EE+++    D
Sbjct: 341 --FFWSGETSMNCLGQVIDETRRHAYAHHIQRLMVVGNFALLAGVAPREIEEWYLVVYAD 398

Query: 383 GD 384
             
Sbjct: 399 AF 400


>gi|218202510|gb|EEC84937.1| hypothetical protein OsI_32152 [Oryza sativa Indica Group]
          Length = 741

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 13  WLRNDLRITDNKALYAA-CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           W ++DLR+ D+  L AA        V+ +++           +++    +  S   +++
Sbjct: 49  WFKHDLRVDDHPGLAAAVAAEPRRPVLPLYVFDRRILAD---ASKWREQLLFSPNFLRR 104


>gi|269104881|ref|ZP_06157577.1| DNA photolyase [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161521|gb|EEZ40018.1| DNA photolyase [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 516

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 138/385 (35%), Gaps = 62/385 (16%)

Query: 70  KSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK- 125
           + L+Q+G   +     +   +++  + ++ Y  + +  K  Y    E +E R D  ++  
Sbjct: 62  QELTQQGHHVLYLTLDETEQYENLGQLIEVYIKETKAEKFEYQ---EPDEYRLDNQIKAY 118

Query: 126 --------------RLQHRVICKSF--DDSVLLP--------PGSILNHALQMYKVYTPF 161
                          L  + I + F  D   ++           +IL    +   +   F
Sbjct: 119 SFPCSIACVDNEHFLLSRQEINEQFTADKHTVMEHFYRRMRKRFNILMEVDKPIGMKWNF 178

Query: 162 RKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI 218
            K   + L   D+++LP P      ++  V   N  R      +    ++PI  Q AL +
Sbjct: 179 DKNNREKLKSIDIKNLPQPLCFNNDVSEIVQRLNRHRIKTIGDEQSVLLWPINRQQALTL 238

Query: 219 LRKFCKEKVYYYVE-----QRDIPAIQGT---SQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           L  FC   + ++ +         P+ + +   S+LS  L+  +LSP +  N     F   
Sbjct: 239 LNHFCHVCLPFFGQFQDAMTHTSPSTKWSLYHSRLSFCLNCKLLSPLEVMNIAISHFEQK 298

Query: 271 LIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQA 325
                 +    ++ + L WRE+ R +          K  +  +  +    WN D+ +L  
Sbjct: 299 NNNIDIAQIEGFIRQILGWREYIRAIYWVNMPKYKDKNALNSSRPLPQFFWNGDTKMLCQ 358

Query: 326 WKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG-- 383
            +           A++Q  +  + H+  R++          +D    + +++   +D   
Sbjct: 359 RE-----------AIQQSLSFAYAHHIQRLMVTGNFCLLAEIDPSEVDNWYLGIYIDAIE 407

Query: 384 --DLASNNGGWQWAASTGNDSVPYF 406
             +L +  G   +A      + PY 
Sbjct: 408 WVELPNTRGMALFADGGIVGTKPYC 432


>gi|332524908|ref|ZP_08401094.1| deoxyribodipyrimidine photolyase-related protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332108203|gb|EGJ09427.1| deoxyribodipyrimidine photolyase-related protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 511

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 123/355 (34%), Gaps = 46/355 (12%)

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-FYNRQYEINEVRRD 120
           +  L  +Q   +  G+  +     +F  ++    ++   +R  +L F+ R     E RR 
Sbjct: 107 HRVLRALQAVAASHGLPLELRPDRHFFCTVREFAAHARSRRTLRLEFFYR-----EQRRR 161

Query: 121 KLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP 180
             +                 L+  G         +      R+A  ++            
Sbjct: 162 HGV-----------------LMDGGE---PCGGRWNYDADNREAFGRDGPPPHAEPPRFA 201

Query: 181 AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI--PA 238
              +T  V      RF  +P +     +P+  + ALH L++F  E++  +   +D   P 
Sbjct: 202 PDAMTREVLDLVRRRFAGHPGRLDSFAWPVTREQALHALQRFVAERLAGFGRWQDALWPG 261

Query: 239 IQ--GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLM 295
                 SQLS  L++ +L P +     +  +    + P   A  ++ + L WRE+ R + 
Sbjct: 262 EPWLWHSQLSAALNLKLLDPHEVVAAAEAAYRAGRV-PLESAEGFIRQILGWREYVRGVY 320

Query: 296 AFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLR 354
               P                W+    L   +  G T    +  A+ Q    G+ ++  R
Sbjct: 321 WTRMPGYAELNA---------WDAHEPLPAFYWSGDTPMACLADAIVQTLEHGYAYHIQR 371

Query: 355 MITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPY 405
           ++        L V+ +    ++++  +D     +L +  G  Q A      S PY
Sbjct: 372 LMVTGLYALLLGVEPKEVHAWYLAVYVDAVEWVELPNTLGMSQNADGGLMASKPY 426


>gi|302834309|ref|XP_002948717.1| hypothetical protein VOLCADRAFT_89124 [Volvox carteri f.
           nagariensis]
 gi|300265908|gb|EFJ50097.1| hypothetical protein VOLCADRAFT_89124 [Volvox carteri f.
           nagariensis]
          Length = 751

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 71/238 (29%), Gaps = 43/238 (18%)

Query: 9   VHLVWLRNDLRITDNKALYAAC-----------HNSDAKVIAVFIATPEQWRQHGISARQ 57
             ++W RNDLR+ D+  L AA              S   +  VF+  P +      +   
Sbjct: 74  PVVLWYRNDLRVDDHPGLTAAAVAVGAAGPSGTSASPRPLAPVFLLDPVRLSYLAFTPGG 133

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
              + A+L +++  L  +G               + L +         +    + E+   
Sbjct: 134 PEALSAALERLRAELRVRGSDLAIR----VGSWEQQLTAVARTVGSRAVVSEAEVELRWR 189

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSL 177
                                   LP G+ L+ A     V +   +A +      D+R  
Sbjct: 190 ------------------------LPAGAALDRARDALGVASYGWRAALWRADHFDIRYR 225

Query: 178 PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD 235
              A R               +P  +++P    G      +L +     +  Y + +D
Sbjct: 226 TWRAQRGPPAEPLPAPSALPPFPA-SVEPGRIPGAAEMRKLLTE---AALAVYDDGKD 279


>gi|254470310|ref|ZP_05083714.1| photolyase [Pseudovibrio sp. JE062]
 gi|211960621|gb|EEA95817.1| photolyase [Pseudovibrio sp. JE062]
          Length = 507

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/388 (14%), Positives = 129/388 (33%), Gaps = 49/388 (12%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +  F+++++    + L   G    Y +     N       +     ++ V  +   +  E
Sbjct: 46  KIAFLFSAMRHFAEELKLLGYRVVYRKYDCAENTGSLFGEVLRLTKEEAVAGVIVTKPGE 105

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALI------- 166
              +   +  ++RL   V  +  DD  L         A     +   +    +       
Sbjct: 106 YRLLHGMESWQERLGVPVELRD-DDRFLCSSDEFQRWASGRKSLRLEYFYRDMRRQHAVL 164

Query: 167 ---------QNLVQADLRSLPVPAIRLTGP--VTPSNIPR---------FFDYPFQAIDP 206
                    Q     D R     A+ +  P    P  I +         F D+    +  
Sbjct: 165 MDGDKPLGGQWNFDHDNRKSAPDALEVPEPFAAEPDEITKEVLALVDEAFPDHFGDLLPF 224

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNR 262
            F +  Q+AL +L +F  E++  + + +D           S +S YL+ G+L P +C   
Sbjct: 225 FFAVTRQDALKVLDQFVAERLGKFGDYQDAMVQGEPWMFHSHISFYLNCGLLLPMECVRA 284

Query: 263 LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            +  + +    P +    ++ +++ WREF R +        +  P        + +++  
Sbjct: 285 AERAYFEGRA-PLNSVEGFIRQIVGWREFIRGIY------WLNMPEYAELNYFDASRNLP 337

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
                  G T    +   + +  +  + H+  R++          +  +   E++++   
Sbjct: 338 EFYWS--GETQMNCLRQCIAETKSNAYAHHIQRLMVIGNFSLLAGLAPKQVSEWYLAVYA 395

Query: 382 DGD----LASNNGGWQWAASTGNDSVPY 405
           D      L + +G   +A      S PY
Sbjct: 396 DAYEWVELPNVSGMILFADGGIFASKPY 423


>gi|217971673|ref|YP_002356424.1| deoxyribodipyrimidine photolyase-like protein [Shewanella baltica
           OS223]
 gi|217496808|gb|ACK45001.1| deoxyribodipyrimidine photolyase-related protein [Shewanella
           baltica OS223]
          Length = 521

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 84/249 (33%), Gaps = 21/249 (8%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQA 203
           IL    +       F     Q L   D++ LP P   ++ +T  +      +        
Sbjct: 171 ILMQDGKPLGGQWNFDANNRQKLKTQDIKVLPEPLMFSLDVTEILARLERHQIPTMGRMD 230

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSP 256
              ++PI    +L +L  FC+  +  +   +D    Q         S+LS  L+  ++SP
Sbjct: 231 APLLWPINRAQSLELLTYFCQLCLPSFGRFQDAMTAQHPAKWSLYHSRLSFSLNSKLISP 290

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKI 314
            +  N   + +        +    ++ + L WRE+ R +  A  P               
Sbjct: 291 LEVINAAIDSYQTNAEIDIAQVEGFVRQILGWREYVRGIYWANMPQYASTNALNAHG--- 347

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                  L   +  G T    +  A+ Q     + H+  R++          ++    +E
Sbjct: 348 ------TLPDYFWHGDTKMNCMRQALSQSLDFAYAHHIQRLMVIGNFCLLTEIEPNQVDE 401

Query: 375 YFMSQLLDG 383
           +++   +D 
Sbjct: 402 WYLGVYVDA 410


>gi|146291631|ref|YP_001182055.1| deoxyribodipyrimidine photolyase-like protein [Shewanella
           putrefaciens CN-32]
 gi|145563321|gb|ABP74256.1| deoxyribodipyrimidine photolyase-related protein [Shewanella
           putrefaciens CN-32]
          Length = 521

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 87/248 (35%), Gaps = 19/248 (7%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQA 203
           IL    +       F  +  Q L   DL+SLP P +    +   +               
Sbjct: 171 ILIEDGKPVGGQWNFDASNRQKLKSQDLKSLPTPLMFGHNVEDILERLKRHGINTMGKAD 230

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSP 256
           +  ++PI    +L +LR FC+  +  +   +D    Q         S+LS  L+  ++SP
Sbjct: 231 MHLLWPINRAQSLELLRYFCEYCLPAFGRFQDAMTQQHPAQWSLYHSRLSFSLNAKLISP 290

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
            +  N + E +        +    ++ + L WRE+ R +             +  T K+ 
Sbjct: 291 LEVINAVIEHYQANPHIEIAQVEGFVRQILGWREYVRGIYWANMPQYASINTLEATRKLP 350

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
                     +  G T    +  A+ Q     + H+  R++          ++    +E+
Sbjct: 351 --------DYFWNGKTQMNCLRHALSQSLDFAYAHHIQRLMVIGNFCLLTEIEPNQVDEW 402

Query: 376 FMSQLLDG 383
           ++   +D 
Sbjct: 403 YLGVYVDA 410


>gi|149915729|ref|ZP_01904254.1| hypothetical protein RAZWK3B_11126 [Roseobacter sp. AzwK-3b]
 gi|149810311|gb|EDM70156.1| hypothetical protein RAZWK3B_11126 [Roseobacter sp. AzwK-3b]
          Length = 509

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 65/436 (14%), Positives = 130/436 (29%), Gaps = 50/436 (11%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL AA    D  V+A  +     +  H    ++   +++++      L+  G    Y + 
Sbjct: 19  ALRAADKAHDLIVMA-EVGDEAGYVPHH--PKKIALVFSAMRHFADDLTADGWQVAYTKL 75

Query: 85  SNFDDSIEWLDSYCL---QQRVTKLFYNRQYEINEVRRDKLLEKR------LQHRVICKS 135
            + D S   +        +   +++   R     E R    L+        L       S
Sbjct: 76  DDADASRSIVGELMRRGQEHGTSEVIATR---PGEWRLISALDDAPLSVTMLPDDRFVCS 132

Query: 136 FDDSVLLPPG-----------SILNHALQMYKVYTPFRKALIQNLVQADL--------RS 176
            +       G            +      M +   P       +              + 
Sbjct: 133 LEAFDTWAEGRKELRMEWFYREMRRKTGLMMEGDKPAGGKWNFDHDNRKPASGDLLRAKP 192

Query: 177 LPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
           L      +T  V      RF D         + +   +AL  L  F    +  + + +D 
Sbjct: 193 LRFAPDAITAEVLDLVESRFGDTFGTLRPFHYAVTRADALRALDHFATHLLAGFGDYQDA 252

Query: 237 PAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
             +Q      S LSPYL++G+L P +   R++ E+    +   +        + WRE+ R
Sbjct: 253 MLMQDPFLHHSILSPYLNLGLLGPLEICQRVEAEWQAGRVPINASEGYIRQVIGWREYMR 312

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            +          +  +     +        L       T    +  A+ Q     + H+ 
Sbjct: 313 GIYFREGPDYTSRNVLGHDRALP------ALYWGAP--TRMNCLSHAVAQTRDEAYAHHI 364

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPYFRI 408
            R++          +D     E++++  +D        +  G  Q+A      S PY   
Sbjct: 365 QRLMVTGNFALLAGIDPHQVHEWYLAVYIDAYEWVEAPNTIGMSQFADGGIVGSKPYVSS 424

Query: 409 FNPTIQGKRFDPQGTF 424
            N   +   +     +
Sbjct: 425 GNYIAKMSDYCSDCAY 440


>gi|304411504|ref|ZP_07393117.1| deoxyribodipyrimidine photolyase-related protein [Shewanella
           baltica OS183]
 gi|307306720|ref|ZP_07586462.1| deoxyribodipyrimidine photolyase-related protein [Shewanella
           baltica BA175]
 gi|304350031|gb|EFM14436.1| deoxyribodipyrimidine photolyase-related protein [Shewanella
           baltica OS183]
 gi|306910688|gb|EFN41117.1| deoxyribodipyrimidine photolyase-related protein [Shewanella
           baltica BA175]
          Length = 521

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 85/249 (34%), Gaps = 21/249 (8%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQA 203
           IL    +       F  +  Q L   D++ LP P   ++ +T  +      +        
Sbjct: 171 ILMQEGKPLGGQWNFDASNRQKLKPQDIKVLPEPLMFSLDVTEILARLERHQIPTMGRID 230

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSP 256
              ++PI    +L +L  FC+  +  +   +D    Q         S+LS  L+  ++SP
Sbjct: 231 GPLLWPINRAQSLELLAYFCQVCLPSFGRFQDAMTAQHHAKWSLYHSRLSFSLNSKLISP 290

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKI 314
            +  N   + +        +    ++ + L WRE+ R +  A  P               
Sbjct: 291 LEVINAAIDSYQTNAEIDIAQVEGFVRQILGWREYVRGIYWANMPQYASTNALDAHG--- 347

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                  L   +  G T    +  A+ Q     + H+  R++          ++    +E
Sbjct: 348 ------TLPDYFWHGDTKMNCMRQALSQSLDFAYAHHIQRLMVIGNFCLLTEIEPNQVDE 401

Query: 375 YFMSQLLDG 383
           +++   +D 
Sbjct: 402 WYLGVYVDA 410


>gi|161522871|ref|YP_001585800.1| deoxyribodipyrimidine photolyase-related protein [Burkholderia
           multivorans ATCC 17616]
 gi|189348295|ref|YP_001941491.1| hypothetical protein BMULJ_05679 [Burkholderia multivorans ATCC
           17616]
 gi|160346424|gb|ABX19508.1| deoxyribodipyrimidine photolyase-related protein [Burkholderia
           multivorans ATCC 17616]
 gi|189338433|dbj|BAG47501.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
          Length = 509

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 126/390 (32%), Gaps = 60/390 (15%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYEI-NE 116
           I+A++ +    L   G    Y +  +          LDS        ++    +Y + +E
Sbjct: 50  IFAAMRRFATLLRDAGHRVHYIEIDDQFNRQAIPANLDSVAALHGAARI----EYLLSDE 105

Query: 117 VRRDKLL-EKRLQHRVICKSFDDSVLL----PPGSILNHALQMYKVYTPFRKALIQNLVQ 171
            R D+ L E      V  ++ D           G +L    + + +   +R   +++ V 
Sbjct: 106 WRVDRQLSEYAAVASVPVRAVDTGHFYTTRDEVGRVL-GTGRAWVMDRFYRSMRVRHRVL 164

Query: 172 ADLRSLP----------VPAIRLTGPVTPSNIPRFFDY----------------PFQAID 205
            D    P                  P  PS+     D+                   A D
Sbjct: 165 LDGEGRPAGGQWNYDAENRDAWSGTPAEPSDWRPHHDHRPLWDRIVAAGVRSFGEPSAGD 224

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWN 261
             +P+    AL  L  F +  +  + + +D           S LS  L++ +L+PR+   
Sbjct: 225 FRWPVDRVEALACLDAFIEHALPSFGQFQDAMHTSARRLFHSMLSFALNVKMLNPREVVA 284

Query: 262 RLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKD 319
           R +  +      P +    ++ + L WREF R +     P       F       +W   
Sbjct: 285 RAEHAYR-TGAAPLAAVEGFIRQILGWREFVRGVYWARMPGYETSNAFGHRRPLPQW--- 340

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
                 +  G T    +  A+RQ       H+  R++          +D     E+++  
Sbjct: 341 ------FWNGRTRMGCMAHALRQSLEDAHAHHIQRLMVIGNFALLAGLDAHAVHEWYLGV 394

Query: 380 LLDGD----LASNNGGWQWAASTGNDSVPY 405
            +D      + +  G  Q+A      S PY
Sbjct: 395 YIDAFEWVEMPNTLGMSQYADGGAMASKPY 424


>gi|163796607|ref|ZP_02190566.1| hypothetical protein BAL199_22927 [alpha proteobacterium BAL199]
 gi|159178167|gb|EDP62712.1| hypothetical protein BAL199_22927 [alpha proteobacterium BAL199]
          Length = 533

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/388 (14%), Positives = 119/388 (30%), Gaps = 55/388 (14%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
            I +++    + L  +G+   Y +  +          L       +  K+      E  E
Sbjct: 51  LILSAMRHFAEELISEGLRLHYVRLDDPANTGSFTSELARAIALHQPDKIIA---TEPGE 107

Query: 117 VRRDKLLEKR-------LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPF-------- 161
            R  +++ +        L+ R     F         +    + +M   Y           
Sbjct: 108 WRVAQMMSEWSAQFGMPLEIRENNSFFCSRGRFARWADERKSYRMEFFYREMRRETGLLM 167

Query: 162 ---------RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF----FDYPFQAIDPM- 207
                         +N      R       R         +       F + F  +DP  
Sbjct: 168 QGDKPEGGEWNFDKENRKALPARLDSPMRRRFEPDAATREVMTLVGERFAHHFGDLDPFG 227

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRL 263
           + +   +AL  L  F    +  Y + +D   +       S +SPYL+ G+L+ R+     
Sbjct: 228 WAVTRADALEALEHFISVCLPLYGDYQDAMKVGEPFLYHSIISPYLNCGLLTAREVCVAA 287

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSH 321
           +  F      P +    ++ + L WRE+ R +     P+                     
Sbjct: 288 ERAFR-AGHAPLNAVEGFIRQILGWREYVRGIYWRHMPNYADTNALYAQR---------P 337

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           L + +  G T    +   + +     + H+  R++          ++ R  EE++++  +
Sbjct: 338 LTEFFWSGDTRMNCVAQVVGETRRNAYAHHIQRLMITGNFALLAGLEPRAVEEWYLAVYI 397

Query: 382 DGD----LASNNGGWQWAASTGNDSVPY 405
           D      L + +G   +A      S PY
Sbjct: 398 DAFDWVELPNTHGMVLFADGGMLASKPY 425


>gi|149188416|ref|ZP_01866709.1| hypothetical protein VSAK1_20514 [Vibrio shilonii AK1]
 gi|148837634|gb|EDL54578.1| hypothetical protein VSAK1_20514 [Vibrio shilonii AK1]
          Length = 516

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 118/370 (31%), Gaps = 56/370 (15%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCS---NFDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           Q  F   S+    +SL Q+G    Y       +FD   E + S   Q  + +  Y R   
Sbjct: 49  QVAFFL-SMESFAQSLMQQGHHVHYLTLDETCDFDSLTELVASVGEQHNIVRFEYQR--- 104

Query: 114 INEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS------ILNHALQMYKVYTPFRKAL-- 165
            +E R    L +    +      +    L P S      +   AL M   Y   RK    
Sbjct: 105 PDEYRLLDQLSRFSHPQFSAILVESEHFLLPFSELETYFVRGKALVMDHFYRKMRKKHGM 164

Query: 166 -------------------IQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQA 203
                                 L ++D+ +LP P   A      V+              
Sbjct: 165 LMESETKPLGGKWSYDANNRNKLKKSDIEALPTPLLFASPTKETVSRIERHNLTSIGRIG 224

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSP 256
              ++PI    +L +L  FC+  +  +   +D    Q         S+LS  L+  +LSP
Sbjct: 225 EQLIWPINRSQSLTLLAHFCQVCLPNFGRFQDAMTEQHESQWSLYHSRLSFSLNCKMLSP 284

Query: 257 RQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEK 313
            +      E++     +   +    ++ + L WRE+ R +     P              
Sbjct: 285 LEVLYAAIEQYAHSDGQITLAQIEGFVRQILGWREYIRGMYWSNMPDYSTANALKA---- 340

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
                   L Q +  G T    +  A+ Q     + H+  R++          +D    E
Sbjct: 341 -----SRALPQYFWNGETKMSCMKRAITQSLDFAYAHHIQRLMVTGNFALLTELDPDQVE 395

Query: 374 EYFMSQLLDG 383
           ++++   +D 
Sbjct: 396 QWYLGIYVDA 405


>gi|311695845|gb|ADP98718.1| deoxyribodipyrimidine photolyase-related protein [marine bacterium
           HP15]
          Length = 529

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 77/248 (31%), Gaps = 16/248 (6%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGPVTPSNIPRFFDYPFQ 202
           G ++    +       F     +          P  +    +T  V       F D+   
Sbjct: 182 GLLMTSDGEPEGGQWNFDADNRKKWTGKPPAPAPFRIEPDAITQEVIALVDEHFSDHFGT 241

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQ 258
             D  F +  ++A   L  F    +  + + +D  +        S LSPY++ G+L P  
Sbjct: 242 TDDFHFAVTAEDAQAALEHFIDYALPCFGDYQDAISDNEDWLFHSILSPYINSGLLDPVA 301

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
                 + +      P +    ++ + L WREF R +          +  +  T  + W 
Sbjct: 302 VCEAAAQAWYSGRA-PINAVEGFVRQILGWREFVRGIYWMNMPGYAKENRLGNTRALPW- 359

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
                   +  G T    +  A+       + H+  R++          +      ++++
Sbjct: 360 -------FYWTGDTKMRCMHKAIDATRRNAYAHHIQRLMVTGNFALLAGIKPEEICDWYL 412

Query: 378 SQLLDGDL 385
           +   D   
Sbjct: 413 AVYADAYD 420


>gi|41023443|emb|CAE52697.1| hypothetical photolyase [Fowlpox virus isolate HP-438/Munich]
          Length = 200

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 4/139 (2%)

Query: 8   SVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
            V L W+  D R+ DN AL  A   +    I + I      + H  ++R   F+ + L +
Sbjct: 37  KVVLYWMFRDQRVQDNWALIYAQRLALKLKIPLRICFCVVPKFHTTTSRHFMFLISGLKE 96

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRL 127
           V +   +  I F              +  Y +   +T  F  R  E    R  K     L
Sbjct: 97  VAEECKRLCIGFSLIYGVPKVIIPCIVKKYRVGVIITDFFPLRVPE----RLMKQTVISL 152

Query: 128 QHRVICKSFDDSVLLPPGS 146
              +     D   ++P   
Sbjct: 153 PDNIPFIQVDAHNIVPCWE 171


>gi|160873582|ref|YP_001552898.1| deoxyribodipyrimidine photolyase-like protein [Shewanella baltica
           OS195]
 gi|160859104|gb|ABX47638.1| deoxyribodipyrimidine photolyase-related protein [Shewanella
           baltica OS195]
 gi|315265811|gb|ADT92664.1| deoxyribodipyrimidine photolyase-related protein [Shewanella
           baltica OS678]
          Length = 521

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 85/249 (34%), Gaps = 21/249 (8%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQA 203
           IL    +       F  +  Q L   D++ LP P   ++ +T  +      +        
Sbjct: 171 ILMQDGKPLGGQWNFDASNRQKLKTQDIKVLPEPLMFSLDVTEILARLERHQIPTMGRID 230

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSP 256
              ++PI    +L +L  FC+  +  +   +D    Q         S+LS  L+  ++SP
Sbjct: 231 APLLWPINRAQSLTLLTYFCQVCLPSFGRFQDAMTAQHPAKWSLYHSRLSFSLNSKLISP 290

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKI 314
            +  N   + +        +    ++ + L WRE+ R +  A  P               
Sbjct: 291 LEVINAAIDSYQTNAEIDIAQVEGFVRQILGWREYVRGIYWANMPQYASTNALNAHG--- 347

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                  L   +  G T    +  A+ Q     + H+  R++          ++    +E
Sbjct: 348 ------TLPDYFWHGDTKMNCMRQALSQSLDFAYAHHIQRLMVIGNFCLLTEIEPNQVDE 401

Query: 375 YFMSQLLDG 383
           +++   +D 
Sbjct: 402 WYLGVYVDA 410


>gi|208780424|ref|ZP_03247765.1| deoxyribodipyrimidine photolyase-related protein [Francisella
           novicida FTG]
 gi|208743792|gb|EDZ90095.1| deoxyribodipyrimidine photolyase-related protein [Francisella
           novicida FTG]
          Length = 509

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 83/248 (33%), Gaps = 22/248 (8%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
           +L++          +     +         +     A  +T  V       F D      
Sbjct: 165 LLDNDGNPEGGQWNYDSQNPKMPSSDMQIPKPYKSTADDITKRVIELVEQTFVDNFGDIE 224

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCW 260
              + +  + AL  L  F KE++  + + +D+     A    S +S Y++ G+L P +C 
Sbjct: 225 PFNYAVTREQALEALDLFVKERLSDFGDYQDVMLEGQAWMYHSHISMYINSGLLLPMECI 284

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---W 316
              ++ +      P +    ++ + L WREF R +            ++  T K+    W
Sbjct: 285 KAAEKAYYK-GNAPLNAIEGFIRQILGWREFVRGVYWLKMPDYRDMNYLEATRKLPSFYW 343

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
           +             T    +   +++     + H+  R++          +D +   E++
Sbjct: 344 DT-----------ETKMNCLHQCVKETKENAYAHHIQRLMVLGNFALLAGIDPKYVNEWY 392

Query: 377 MSQLLDGD 384
           +    D  
Sbjct: 393 LLVYADAY 400


>gi|304322194|ref|YP_003855837.1| hypothetical protein PB2503_13289 [Parvularcula bermudensis
           HTCC2503]
 gi|303301096|gb|ADM10695.1| hypothetical protein PB2503_13289 [Parvularcula bermudensis
           HTCC2503]
          Length = 509

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 14/194 (7%)

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSI 251
           F D+     D  + +    A   L  F +  +  + + +D           S LS Y++ 
Sbjct: 216 FADHFGSLEDFRYGVTRNQARRQLDDFIETSLPNFGDYQDAMGTGEDFLNHSLLSAYINA 275

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPW 310
           G+L PR+     +E + D    P +    ++ + L WREF R +           P    
Sbjct: 276 GLLLPREVCEAAEEAYRDGQA-PLNAVEGFIRQILGWREFIRGVY------WREMPGYKD 328

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
              ++  +          G T    +  A+R      + H+  R++          V   
Sbjct: 329 DNALDAKRSLPAFYWT--GETDMHCLAEAIRNTRDHAYAHHIQRLMVTGNFALLAGVVPA 386

Query: 371 IGEEYFMSQLLDGD 384
             EE+++    D  
Sbjct: 387 EIEEWYLIVYADAY 400


>gi|89255768|ref|YP_513130.1| hypothetical protein FTL_0343 [Francisella tularensis subsp.
           holarctica LVS]
 gi|156501732|ref|YP_001427797.1| deoxyribodipyrimidine photolyase-related protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167009707|ref|ZP_02274638.1| deoxyribodipyrimidine photolyase-related protein [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367214|ref|ZP_04983244.1| hypothetical protein FTHG_00417 [Francisella tularensis subsp.
           holarctica 257]
 gi|290953048|ref|ZP_06557669.1| deoxyribodipyrimidine photolyase-related protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313746|ref|ZP_06804323.1| deoxyribodipyrimidine photolyase-related protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89143599|emb|CAJ78783.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253034|gb|EBA52128.1| hypothetical protein FTHG_00417 [Francisella tularensis subsp.
           holarctica 257]
 gi|156252335|gb|ABU60841.1| deoxyribodipyrimidine photolyase-related protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 509

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 70/181 (38%), Gaps = 20/181 (11%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
            + AL  L  F KE++  + + +D      A    S +S Y++ G+L P +C     + +
Sbjct: 232 REQALEALDLFVKERLSDFGDYQDAMLEGQAWMYHSHISMYINSGLLLPMECIKAAVKAY 291

Query: 268 VDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLL 323
            +    P +    ++ + L WREF R +            ++  T K+    W+ ++ + 
Sbjct: 292 YN-GNAPLNAVEGFIRQILGWREFVRGIYWLKMPGYRDMNYLGATRKLPSFYWDANTKMN 350

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             ++            +++     + H+  R++          +D +   E+++    D 
Sbjct: 351 CLYQ-----------CVKETKQNAYAHHIQRLMVLGNFALLAGIDPKYVNEWYLLVYTDA 399

Query: 384 D 384
            
Sbjct: 400 Y 400


>gi|24375655|ref|NP_719698.1| hypothetical protein SO_4169 [Shewanella oneidensis MR-1]
 gi|24350569|gb|AAN57142.1|AE015849_9 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 521

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 117/366 (31%), Gaps = 31/366 (8%)

Query: 38  IAVFIATPEQWR-QHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN--------FD 88
           I  F +   Q+  + G +  Q  ++  +L    +  +    + QY+              
Sbjct: 56  ICAFFSAMAQFASELGAAGHQVRYL--TLDD-TQDFADLNALLQYYVAETGAIKFEYQRP 112

Query: 89  DSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
           D    L      +    +      E      D++  +  Q +          +    +IL
Sbjct: 113 DEYRLLAQLSQLKLANAVVNCVDTEHFLFPFDEIDREFPQGQHRLMEHFYRRMRKRFNIL 172

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAID 205
              ++       F     Q L   D++SLP P +    +   +                 
Sbjct: 173 MTDVKPVGGQWNFDVNNRQKLKSQDIKSLPTPLMFGHNVQDILARLQRHGINTMGKADTH 232

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPRQ 258
            ++PI    +L +L+ FC+  +  +   +D    Q         S+LS  L+  ++SP +
Sbjct: 233 LLWPINRAQSLELLQYFCEYCLPAFGRFQDAMTQQHPAQWSLYHSRLSFSLNAKLISPLE 292

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
             N + E +        +    ++ + L WRE+ R +             +  T K+   
Sbjct: 293 VINAVIEHYHANPFIEIAQVEGFVRQILGWREYVRGIYWANMPKYASINALEATRKLP-- 350

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
                   +  G T    +  A+ Q     + H+  R++          +     +++++
Sbjct: 351 ------DYFWHGKTRMNCLHHALSQSLDFAYAHHIQRLMVIGNFCLLTEIAPDEVDKWYL 404

Query: 378 SQLLDG 383
              +D 
Sbjct: 405 GVYVDA 410


>gi|302186263|ref|ZP_07262936.1| deoxyribodipyrimidine photolyase-like protein protein [Pseudomonas
           syringae pv. syringae 642]
          Length = 469

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 68/425 (16%), Positives = 133/425 (31%), Gaps = 77/425 (18%)

Query: 27  YAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLL---------QVQKSLSQKGI 77
             A      +V  V +  P+         ++   +  +           ++++S+   G+
Sbjct: 19  AEALREHGVRVQYVMLDDPQNTGSVPGELQRWQALLQAEQLHITECGDWRLEQSIKDCGL 78

Query: 78  VFQYHQCSNFDDSIEWLDSY---CLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK 134
             Q+H  + F  S +   S+     Q R+   +        E+RR   L           
Sbjct: 79  PIQWHADTRFLCSRDEFSSWAQGKKQLRMEFFY-------REMRRKSRL----------- 120

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGPVTPSN 192
                       +LN           F     + L +      P       +T  V    
Sbjct: 121 ------------LLNGDGTPVGGAWNFDAENRKALPKGVAAPYPLRFSPDIVTRQVLTLV 168

Query: 193 IPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPY 248
             RF  +        +P+   +A  +   F    +  + + +D  A        +++S  
Sbjct: 169 GERFASHYGSLETFDYPVTHADAQALWAYFLDYGLAGFGDYQDAMATDEPFLFHARISAA 228

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKP 306
           L+IG+L  RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  
Sbjct: 229 LNIGLLDLRQICSDVESAYWSGRV-GLNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNL 287

Query: 307 FIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDL 365
           F              L + +  G T    +  A+ Q     + H+  R++   +F +   
Sbjct: 288 FG---------NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAG 338

Query: 366 LVDWRIGEEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQG 422
           +V  +I E Y    +   D     +  G    A      S PY                G
Sbjct: 339 IVPEQICEWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASG 385

Query: 423 TFIRH 427
            +I+ 
Sbjct: 386 QYIKR 390


>gi|254369040|ref|ZP_04985053.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121961|gb|EDO66131.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 509

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 70/181 (38%), Gaps = 20/181 (11%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
            + AL  L  F KE++  + + +D      A    S +S Y++ G+L P +C     + +
Sbjct: 232 REQALEALDLFVKERLSDFGDYQDAMLEGQAWMYHSHISMYINSGLLLPMECIKAAVKAY 291

Query: 268 VDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLL 323
            +    P +    ++ + L WREF R +            ++  T K+    W+ ++ + 
Sbjct: 292 YN-GNAPLNAVEGFIRQILGWREFVRGIYWLKMPSYRDMNYLGATRKLPSFYWDANTKMN 350

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             ++            +++     + H+  R++          +D +   E+++    D 
Sbjct: 351 CLYQ-----------CVKETKQNAYAHHIQRLMVLGNFALLAGIDPKYVNEWYLLVYTDA 399

Query: 384 D 384
            
Sbjct: 400 Y 400


>gi|110678541|ref|YP_681548.1| hypothetical protein RD1_1213 [Roseobacter denitrificans OCh 114]
 gi|109454657|gb|ABG30862.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 508

 Score = 55.0 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 63/394 (15%), Positives = 126/394 (31%), Gaps = 50/394 (12%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL A   + D  V+A  +A    + QH    ++   I+A++ +  + L  +G    Y Q 
Sbjct: 18  ALQAGDKSHDTVVMA-EVADETSYVQHH--PKKIALIFAAMRKFAQHLRNEGWNVAYAQL 74

Query: 85  SNFDDSIEWLDSYCL---QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC----KSFD 137
            + +++   +        Q     +      E  E R   LL++    RV      +   
Sbjct: 75  DDSENAGSIVGELLRRAEQTGAQTVLA---TEPGEWRLITLLKEA-PLRVEVLPDDRFLA 130

Query: 138 DSVLLPPGSILNHALQMYKVYTPFRKALI-----------QNLVQADLRSLPVPAIRLTG 186
                   +     L+M   Y   R+              +     D R      I   G
Sbjct: 131 SHQEFEDWADGRKQLRMEYFYREMRRKTGLLMEGDQPSGGKWNFDHDNRKPAPDEITFDG 190

Query: 187 PVTPSNIPRF----------FDYPFQAIDPMF-PIGEQNALHILRKFCKEKVYYYVEQRD 235
           P+                  F   F  + P +       AL  L  F +  +  + + +D
Sbjct: 191 PLRFEPDDTVQEVLDLVEARFSNHFGRLRPFWFATSRAEALQQLDHFIENGLPKFGDFQD 250

Query: 236 IPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREF 290
                        +S  L+IG+L+P +        + +    P +    ++ ++I WRE+
Sbjct: 251 AMLNDNRFLYHGLISTSLNIGLLTPLEVCTAAARAY-EQGDAPINAVEGFIRQIIGWREY 309

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R +         G+  +  +  +           +  G T    +  A+ Q     + H
Sbjct: 310 VRGIYFLEGPDYTGRNVLGQSRDLP--------DVYWGGKTDMNCMAKAVGQTREEAYAH 361

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           +  R++          VD +   E++++   D  
Sbjct: 362 HIQRLMITGNFGLLAGVDPQQMHEWYLAVYADAF 395


>gi|319424861|gb|ADV52935.1| deoxyribodipyrimidine photolyase-related protein [Shewanella
           putrefaciens 200]
          Length = 521

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 85/244 (34%), Gaps = 19/244 (7%)

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAIDPM 207
             +       F  +  Q L   DL+SLP P +    +   +               +  +
Sbjct: 175 DGKPVGGQWNFDASNRQKLKSQDLKSLPTPLMFGHNVEDILERLKRHGINTMGKADMHLL 234

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPRQCW 260
           +PI    +L +LR FC+  +  +   +D    Q         S+LS  L+  ++SP +  
Sbjct: 235 WPINRAQSLELLRYFCEYCLPAFGRFQDAMTQQHPAQWSLYHSRLSFSLNAKLISPLEVI 294

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKD 319
           N + E +        +    ++ + L WRE+ R +             +  T K+     
Sbjct: 295 NAVIEHYQANPHIEIAQVEGFVRQILGWREYVRGIYWANMPQYASINTLEATRKLP---- 350

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
                 +  G T    +  A+ Q     + H+  R++          ++    +E+++  
Sbjct: 351 ----DYFWNGKTQMNCLRHALSQSLDFAYAHHIQRLMVIGNFCLLTEIEPNQVDEWYLGV 406

Query: 380 LLDG 383
            +D 
Sbjct: 407 YVDA 410


>gi|261212548|ref|ZP_05926833.1| DNA photolyase [Vibrio sp. RC341]
 gi|260838479|gb|EEX65135.1| DNA photolyase [Vibrio sp. RC341]
          Length = 516

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 79/251 (31%), Gaps = 20/251 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPF 201
           G ++    +       F       L   DL  LP P      ++   +            
Sbjct: 163 GYLMESENKPEGGQWNFDAENRNKLKAPDLLHLPTPLRFDNSISSIKSRLERHNVKSIGN 222

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVL 254
                ++PI    AL +L  FC+  +  +   +D    Q         S+LS  L+  +L
Sbjct: 223 VGESLLWPINRAQALSLLAHFCQCALPNFGRFQDAMTAQHPYRWSLYHSRLSFALNCKLL 282

Query: 255 SPRQCWNRLKEEFVDLLIKPK-SGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTE 312
           SP++      + +     +   +    ++ + L WRE+ R +          +       
Sbjct: 283 SPQEVIGAAIDTYRAAQGEVSLAQVEGFVRQILGWREYIRGMYWSNMPHYKTRNHFGARR 342

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
            +           +  G T    +  A+ Q    G+ H+  R++           D    
Sbjct: 343 PLP--------SYFWNGQTKMHCLQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDEV 394

Query: 373 EEYFMSQLLDG 383
           + +++   +D 
Sbjct: 395 DAWYLGIYIDA 405


>gi|85374572|ref|YP_458634.1| hypothetical protein ELI_08725 [Erythrobacter litoralis HTCC2594]
 gi|84787655|gb|ABC63837.1| hypothetical protein ELI_08725 [Erythrobacter litoralis HTCC2594]
          Length = 522

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 77/224 (34%), Gaps = 17/224 (7%)

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
           +  +    R L  P       +      +F D+     +  +P+    A      F  E+
Sbjct: 192 KEDMDPPARPLFEPDEITRECIDLVE-EKFGDHFGSLENFGWPVTRDEAEKAADAFFAER 250

Query: 227 VYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +  + + +D           S LS  +++G+L P +   R ++ + D    P + A  ++
Sbjct: 251 IEKFGKFQDAMVYGQDDLYHSMLSTSINLGLLDPVELCRRAEQAYQD-GKAPINSAEGFI 309

Query: 283 NELI-WREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            +LI WRE+ R     + P +                    L + +  G T    +  ++
Sbjct: 310 RQLIGWREYVRGFYWRFMPDLESNNALNAQR---------ALPEFYWTGETDMRCLADSI 360

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           R        H+  R++          +  R  +++++    D  
Sbjct: 361 RSTKENAHAHHIQRLMVLGNFALIAGLSPREVQDWYLVVYADAY 404


>gi|269965811|ref|ZP_06179906.1| hypothetical protein VMC_13360 [Vibrio alginolyticus 40B]
 gi|269829546|gb|EEZ83785.1| hypothetical protein VMC_13360 [Vibrio alginolyticus 40B]
          Length = 117

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 10/110 (9%)

Query: 49  RQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFY 108
                S R   F++ SL  + ++L   G          FDD++    S   Q ++  +F 
Sbjct: 2   NNPHYSERHWRFVWQSLQDMDETLKAYGHRITVL----FDDALACFQSIQAQYQINAVFS 57

Query: 109 NRQYEIN-EVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKV 157
           +++  +N    RD+ +   L  + I     D      G+++  A+     
Sbjct: 58  HQEIGLNCTFERDRQVAAWLYEQNI-----DWFEFEHGAVIRGAINRQGW 102


>gi|124267245|ref|YP_001021249.1| hypothetical protein Mpe_A2056 [Methylibium petroleiphilum PM1]
 gi|124260020|gb|ABM95014.1| hypothetical protein Mpe_A2056 [Methylibium petroleiphilum PM1]
          Length = 88

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 17 DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
          DLR+ D+     A     A  +A+FI  P          R+  ++    + ++ +L+ +G
Sbjct: 7  DLRVADHATPAEAARGDAA--LALFIVEPAWLTSPESHPRREAWLLKCRVALRDALAARG 64

Query: 77 IVFQYHQCSNFDDS 90
          +          D  
Sbjct: 65 LPLPVRTGEAVDGP 78


>gi|221369090|ref|YP_002520186.1| Deoxyribodipyrimidine photolyase-related protein [Rhodobacter
           sphaeroides KD131]
 gi|221162142|gb|ACM03113.1| Deoxyribodipyrimidine photolyase-related protein [Rhodobacter
           sphaeroides KD131]
          Length = 508

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 134/403 (33%), Gaps = 62/403 (15%)

Query: 21  TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80
            D  AL AA  ++D  V+A  +     +  H    ++   I A++ +  + L ++G    
Sbjct: 14  DDLPALRAADPSADLVVMA-EVMEEGTYVPHH--PQKIALILAAMRKFARRLQERGFRVA 70

Query: 81  YHQCSNFDDSIEWLDSYCL---QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF- 136
           Y +  + +              +    ++   R         D  L + L+   +   F 
Sbjct: 71  YSRLDDAETGPSIGAELLRRAAETGARQVIATR-------PGDWRLIEALESLPLPVRFL 123

Query: 137 -DDSVLLPPGSILNHALQMYKVYTPFRKALIQN--------------------------- 168
            DD  L P       A    ++   +    ++                            
Sbjct: 124 PDDRFLCPADEFARWAEGRKQLRMEWFYREMRRRTGLLMEGGEPAGGKWNFDAENRKPAT 183

Query: 169 ---LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKE 225
              L    LR  P   +R    +  +  PR F    +     +P     AL  L  F +E
Sbjct: 184 PDLLRPRPLRFEPDAEVRAVLDLVEARFPRHF---GRLRPFHWPTDRAEALLALDHFIRE 240

Query: 226 KVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSW 281
            +  + +++D           + LS  +++G+L P +   R + E+ +    P +    +
Sbjct: 241 SLPRFGDEQDAMLADDPFLSHALLSSSMNLGLLGPMEVCRRAETEWREGRA-PLNAVEGF 299

Query: 282 LNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
           + + L WRE+ R + A      M    +  +  +        L   K   T    + AA+
Sbjct: 300 IRQILGWREYVRGIWALSGPNYMRSNGLGHSAALP------PLYWGKP--TRMACLSAAV 351

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            Q   + + H+  R++          VD     E+++S  +D 
Sbjct: 352 AQTRDLAYAHHIQRLMVTGNFALLAGVDPAEVHEWYLSVYIDA 394


>gi|315444411|ref|YP_004077290.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           Spyr1]
 gi|315262714|gb|ADT99455.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           Spyr1]
          Length = 505

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 69/217 (31%), Gaps = 15/217 (6%)

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +P                   D     +D   +F +    A   L +F + ++ ++   
Sbjct: 192 PVPYKPREDDIDARVREDLDAMDLDTVGVDGPRLFAVTPAEAKRALTRFIEHRLPHFGRY 251

Query: 234 RD----IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWR 288
            D           S LS  L++GVL P       +  + D    P +    ++ + L WR
Sbjct: 252 EDAIMGQDWAMSHSLLSVPLNLGVLHPLDAVEAAERAYRDKQA-PLAAVEGFIRQILGWR 310

Query: 289 EFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           E+  HL   + P           T   +W  D        Q       +  A++ +   G
Sbjct: 311 EYMWHLYWHFGPDYTQKNELNARTPLPDWWADLDADAVTAQ------CLHHALKGVRDRG 364

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           W H+  R++                 E+F +  +DG 
Sbjct: 365 WTHHIQRLMILGSHALQRGYRPDELTEWFATAYVDGF 401


>gi|145224074|ref|YP_001134752.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145216560|gb|ABP45964.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium
           gilvum PYR-GCK]
          Length = 505

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 69/217 (31%), Gaps = 15/217 (6%)

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            +P                   D     +D   +F +    A   L +F + ++ ++   
Sbjct: 192 PVPYKPREDDIDARVREDLDAMDLDTVGVDGPRLFAVTPAEAKRALTRFIEHRLPHFGRY 251

Query: 234 RD----IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWR 288
            D           S LS  L++GVL P       +  + D    P +    ++ + L WR
Sbjct: 252 EDAMMGQDWAMSHSLLSVPLNLGVLHPLDAVEAAERAYRDKQA-PLAAVEGFIRQILGWR 310

Query: 289 EFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           E+  HL   + P           T   +W  D        Q       +  A++ +   G
Sbjct: 311 EYMWHLYWHFGPDYTQKNELNARTPLPDWWADLDADAVTAQ------CLHHALKGVRDRG 364

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           W H+  R++                 E+F +  +DG 
Sbjct: 365 WTHHIQRLMILGSHALQRGYRPDELTEWFATAYVDGF 401


>gi|158424366|ref|YP_001525658.1| hypothetical protein AZC_2742 [Azorhizobium caulinodans ORS 571]
 gi|158331255|dbj|BAF88740.1| uncharacterized protein [Azorhizobium caulinodans ORS 571]
          Length = 526

 Score = 54.6 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 130/426 (30%), Gaps = 56/426 (13%)

Query: 24  KALYAACHNSDAK---VIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80
             L  A    D K   V+ V +A    +  H    ++  FI A++    + L   G    
Sbjct: 23  PGLS-ALRGGDRKRDVVLMVEVAEETTYVPHH--RKKIAFILAAMRAFARELEADGWRVD 79

Query: 81  YHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEK--RLQHRVICKS 135
           Y + ++          L+    +    ++      E   +   K       ++ R +  S
Sbjct: 80  YVRLADPVNTGSFSGELERAVGRWDPERVAATEAGEWRVLEAQKAWADAPWMEGRTLDLS 139

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQ------------------------ 171
            DD  L P       A +   +   F    ++                            
Sbjct: 140 PDDRFLCPEAFFRAWAGERKGLRMEFFYREMRRRTGLLMDGGEPCGGRWNFDAENRKPAR 199

Query: 172 ---ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
                 R         T  V      RF D+        F +   +A      F  E + 
Sbjct: 200 ADLFMPRPPRFAPSADTREVLELVAARFADHFGDIKPFWFAVTRADAETAFAHFLTEALP 259

Query: 229 YYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            + + +D           + ++ YL++G+LSP +   R + E+      P +    ++ +
Sbjct: 260 RFGDYQDAMLEGEPFLYHAVIALYLNVGLLSPLEVCQRAEAEYRAGRA-PLNAVEGFIRQ 318

Query: 285 -LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            L WRE+ R +        + +  +  +  +           +  G T    + AA+ Q 
Sbjct: 319 ILGWREYVRGIYWLTMPGYLDRNALAASRPLP--------SLYWSGETRMACMAAAIGQT 370

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTG 399
               + H+  R++          +  R   E++++   D        +  G  Q+A    
Sbjct: 371 KAEAYAHHIQRLMVTGNFALLAGIAPRQVHEWYLAVYADAFEWVEAPNTIGMSQFADGGL 430

Query: 400 NDSVPY 405
             S PY
Sbjct: 431 LGSKPY 436


>gi|254516978|ref|ZP_05129036.1| photolyase [gamma proteobacterium NOR5-3]
 gi|219674483|gb|EED30851.1| photolyase [gamma proteobacterium NOR5-3]
          Length = 502

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 79/249 (31%), Gaps = 20/249 (8%)

Query: 145 GSILNHALQMYKVYTPF----RKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200
           G +L+   +       +    R          D  S+   A  +T  V       F D P
Sbjct: 156 GVLLDEDGEPEGGKWNYDADNRGGWRAQTTVPDRPSI--AADDITQEVIALVEESFADNP 213

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSP 256
                    +  ++A      FC   +  +   +D  A +        +S YL+IG+L P
Sbjct: 214 GDLSQFRLAVTREDAQAQFDWFCAHALDNFGNYQDALAEESPWMFHGLISMYLNIGLLEP 273

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAF-YPSVCMGKPFIPWTEKIE 315
                +++  + D      +        L WRE+ R +     P       F        
Sbjct: 274 LAVCQQVERAWRDGRCSLAAAEGFIRQILGWREYVRGIYWHAMPEYAQRNTFEARHPLPP 333

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W            G T    +  A++Q   +G+ H+  R++          +D     E+
Sbjct: 334 WFW---------TGDTDMRCLSQALKQSLELGYAHHIQRLMVIGNFALLAGLDVTEVCEW 384

Query: 376 FMSQLLDGD 384
           +++  +D  
Sbjct: 385 YLAVYVDAF 393


>gi|113477369|ref|YP_723430.1| deoxyribodipyrimidine photolyase-like protein [Trichodesmium
           erythraeum IMS101]
 gi|110168417|gb|ABG52957.1| deoxyribodipyrimidine photolyase-related protein [Trichodesmium
           erythraeum IMS101]
          Length = 476

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 67/432 (15%), Positives = 132/432 (30%), Gaps = 66/432 (15%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99
           V + + E   +      +  +I   L + +  L  KG    Y + +   +  + +     
Sbjct: 26  VLVESKELCNRLNYHKFKLTYILTCLREYRDLLISKGKKVYYFELNQHLNFEDAIKKLVK 85

Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN---------- 149
           +   TKL             DK + K +   +     +   L  P  +            
Sbjct: 86  EFSYTKL-------QFTSISDKPVRKLIGEIIHNLKLESQELQSPSFLTTNLDFQKYLEH 138

Query: 150 -HALQMYKVYTPFRKALIQNLVQADLRSL-------PVPAIRLTGPVTPSNIPRFFDYPF 201
                +   +  +++  +   V  +                       PS+I  F    +
Sbjct: 139 SKQKYLMNSFYIWQRKRLNIFVDQNKPKFGKWSFDSENRKKLPKNVSLPSSIWEFKSNNY 198

Query: 202 QAI------------------DPMFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAI 239
           Q +                      PI  + A   L++F + +   +    D        
Sbjct: 199 QNVAQTISELYTNNPGYLDLQKSWLPINHKQAKQKLQEFLETRFRLFGNYEDALTNRDNF 258

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKE--EFVDLLIKPKSGAFSWLNELI-WREFYRHLMA 296
              S LSP L+ G+L+P      +    E  + L    +    ++ ++I WRE+ + L  
Sbjct: 259 VFHSVLSPMLNNGLLTPSYVLQEVLNYVEKNNNLEDFYNSIEGFIRQIIGWREWMKLLYE 318

Query: 297 F-YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRM 355
           F Y        F    EK+            K      P+  A + +++ + W H+  R+
Sbjct: 319 FKYDENFRELNFFKAQEKLP-----DYFYDLKDLPENIPLTLA-IEKVSKLSWAHHIERL 372

Query: 356 ITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +  S  +     + +   E+F+SQ +D                G  +   F    P I G
Sbjct: 373 MILSNWMTLNSYNPKECYEWFLSQFVDAYEWVMVPN---VYGMGLFADGGFFATKPYISG 429

Query: 416 KRFDPQGTFIRH 427
                 G +I+ 
Sbjct: 430 ------GAYIKK 435


>gi|152998991|ref|YP_001364672.1| deoxyribodipyrimidine photolyase-like protein [Shewanella baltica
           OS185]
 gi|151363609|gb|ABS06609.1| deoxyribodipyrimidine photolyase-related protein [Shewanella
           baltica OS185]
          Length = 525

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 119/365 (32%), Gaps = 51/365 (13%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYC--LQQRVTKLFYNR-QY-EINE 116
             A++ Q  + L  +G    Y    +  ++ +        +Q +VT++   + +Y   +E
Sbjct: 59  FCAAMAQFAQELRAQGHQVLYLTLDDTFNNTQGYSDLLGLIQHQVTQVGAIKFEYQRPDE 118

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGS--------------------------ILNH 150
            R  + L +   +  +    D    + P                            IL  
Sbjct: 119 YRLLEQLSQLKLNTAVVNCVDTEHFILPFDEIDTQFPVGKHIMMEHFYRRMRKRFNILMQ 178

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPM 207
             +       F  +  Q L   D++ LP P   ++ +T  +      +           +
Sbjct: 179 EGKPLGGQWNFDASNRQKLKTQDIKVLPAPLMFSLDVTEILARLERHQIPTMGRIDGPLL 238

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPRQCW 260
           +PI    +L +L  FC+  +  +   +D    Q         S+LS  L+  ++SP +  
Sbjct: 239 WPINRAQSLELLAYFCQVCLPSFGRFQDAMTAQHHAKWSLYHSRLSFSLNSKLISPLEVI 298

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNK 318
           N   E +        +    ++ + L WRE+ R +  A  P                   
Sbjct: 299 NAAIESYQTNAEIDIAQVEGFVRQILGWREYVRGIYWANMPQYASTNALNAHG------- 351

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
              L   +  G T    +  A+ Q     + H+  R++          ++    +E+++ 
Sbjct: 352 --TLPDYFWHGDTKMNCMRQALFQSLDFAYAHHIQRLMVIGNFCLLTEIEPNQVDEWYLG 409

Query: 379 QLLDG 383
             +D 
Sbjct: 410 VYVDA 414


>gi|320323528|gb|EFW79613.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329428|gb|EFW85420.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 469

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 132/418 (31%), Gaps = 71/418 (16%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFY 108
               ++   I++++    ++L ++G+  QY    +          L  +    +  +L  
Sbjct: 2   PHHPQKIVLIFSAMRHFAEALRERGVRVQYVTLDDPQNTGSVPGELRRWQALLQAKELHV 61

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS---------------------- 146
               +    R ++ ++      +  + + D+  L                          
Sbjct: 62  TECGDW---RLEQSIK---DSGLPIQWYADTRFLCSREEFSSWAQGKKQLRMEFFYREMR 115

Query: 147 -----ILNHALQMYKVYTPFRKALIQNLVQADLRSLPV--PAIRLTGPVTPSNIPRFFDY 199
                +LN           F     + L +      P+   A  +T  V      RF  +
Sbjct: 116 RKSRLLLNGDGTPVGGAWNFDAENRKALPKGVAAPYPMRFSADGITRDVLTLVAERFASH 175

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLS 255
                D  +P+   +A  +   F    +  +   +D  A        +++S  L+IG+L 
Sbjct: 176 YGSLDDFDYPVTHVDAQALWDYFLDFGLAGFGYYQDAMATDEPFLFHARISAALNIGLLD 235

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEK 313
            RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P    G  F      
Sbjct: 236 LRQICSDVESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPEYADGNLFG----- 289

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIG 372
                   L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I 
Sbjct: 290 ----NSRPLPEFYWTGETMMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPNQIC 345

Query: 373 EEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           E Y    +   D     +  G    A      S PY                G +I+ 
Sbjct: 346 EWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 390


>gi|254505155|ref|ZP_05117306.1| Deoxyribodipyrimidine photolyase-related protein [Labrenzia
           alexandrii DFL-11]
 gi|222441226|gb|EEE47905.1| Deoxyribodipyrimidine photolyase-related protein [Labrenzia
           alexandrii DFL-11]
          Length = 517

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 84/267 (31%), Gaps = 21/267 (7%)

Query: 172 ADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYV 231
                L      +T  V      RF  +  Q     F +    A      F  E +  + 
Sbjct: 196 FMPEPLQFEPDAITQDVLNLVEQRFESHIGQLEPFWFAVTRAQAEAAFHHFLDEALENFG 255

Query: 232 EQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LI 286
             +D           + +S YL+ G+LSP+    ++ E +      P + A  ++ + L 
Sbjct: 256 TYQDAMLRGEKFLYHAVISAYLNAGLLSPKNVCEKVVEAYYADNC-PLNAAEGFIRQILG 314

Query: 287 WREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNT 345
           WRE+ R +     P                      L   +  G T    +  A+ Q   
Sbjct: 315 WREYVRGIYWLKMPGYARENALKG---------SRPLPAFYWTGETSMKCVQEAVGQTLE 365

Query: 346 IGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGND 401
             + H+  R++          VD     E++++   D      L +  G  Q+A      
Sbjct: 366 EAYAHHIQRLMVTGNFALLAGVDPVEVHEWYLAVYADAYEWVELPNTLGMSQFADGGLLA 425

Query: 402 SVPYFRIFNPTIQGKRFDPQGTF-IRH 427
           S PY    N   +   +     + +R 
Sbjct: 426 SKPYISSGNYINKMSDYCENCDYNVRK 452


>gi|56707954|ref|YP_169850.1| hypothetical protein FTT_0847 [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670425|ref|YP_666982.1| hypothetical protein FTF0847 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457036|ref|ZP_03665509.1| hypothetical protein FtultM_04711 [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370443|ref|ZP_04986448.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874758|ref|ZP_05247468.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604446|emb|CAG45480.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320758|emb|CAL08863.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568686|gb|EDN34340.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840757|gb|EET19193.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159140|gb|ADA78531.1| hypothetical protein NE061598_04860 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 491

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 70/181 (38%), Gaps = 20/181 (11%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
            + AL  L  F KE++  + + +D      A    S +S Y++ G+L P +C     + +
Sbjct: 214 REQALEALDLFVKERLSDFGDYQDAMLEGQAWMYHSHISMYINSGLLLPMECIKAAVKAY 273

Query: 268 VDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLL 323
            +    P +    ++ + L WREF R +            ++  T K+    W+ ++ + 
Sbjct: 274 YN-GNAPLNAVEGFIRQILGWREFVRGIYWLKMPGYRDMNYLGATRKLPSFYWDANNKMN 332

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             ++            +++     + H+  R++          +D +   E+++    D 
Sbjct: 333 CLYQ-----------CVKETKQNAYAHHIQRLMVLGNFALLAGIDPKYVNEWYLLVYADA 381

Query: 384 D 384
            
Sbjct: 382 Y 382


>gi|126662377|ref|ZP_01733376.1| hypothetical protein FBBAL38_03460 [Flavobacteria bacterium BAL38]
 gi|126625756|gb|EAZ96445.1| hypothetical protein FBBAL38_03460 [Flavobacteria bacterium BAL38]
          Length = 510

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 54/393 (13%), Positives = 132/393 (33%), Gaps = 65/393 (16%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDS--IEWLDSYCLQQRVTKLFYNRQYE-INEV 117
            + S+      L +KG    Y++ S+ ++   +E L    +++  T+ F   +Y+  +E 
Sbjct: 50  FFLSMRNFSDELVKKGHQVIYYKISDANNPQDLEQLILDLVEKNKTEQF---EYQFPDEY 106

Query: 118 RRDKLLEKRLQHR-VICKSFDDSVLLP--------------------------PGSILNH 150
           R D+ L+   +   +  K+ D                                   +L  
Sbjct: 107 RLDEQLKSICKKLSIPTKTVDSEHFYTSRNELADFFKGKKQLLMESFYRMMRKKHDVLMV 166

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVP----AIRLTGPVTPSNIPRFFDYPFQAIDP 206
             Q       F                P+       ++   +   NI  F +   +  + 
Sbjct: 167 GNQPLDGKWNFDHNNRNQYKNEVPIPFPLEFHKNVSKIITEIKSQNITTFGNIDAENFN- 225

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNR 262
            +P     +L ++  FC+  + ++   +D           S+LS  ++  ++SP++  + 
Sbjct: 226 -WPTSRAESLQLIAYFCEHLLAHFGTYQDSLFSGHKFLFHSRLSFAMNSKMISPKEVVDA 284

Query: 263 LKEEFVDLLIK-PKSGAFSWLNELI-WREF----YRHLMAFYPSVCMGKPFIPWTEKIEW 316
           +   +         +    ++ ++I WRE+    Y   M  Y  + + + + P  +   W
Sbjct: 285 VIYYYYQNQETIELAQVEGFVRQIIGWREYVRGIYWKEMPNYAQMNVLENYNPLPDFF-W 343

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
                       G T    +  ++ Q  +  + H+  R++          +     + ++
Sbjct: 344 -----------TGKTKMKCLQHSISQSLSEAYAHHIQRLMVIGNFSLLAQLHPDEVDAWY 392

Query: 377 MSQLLDG----DLASNNGGWQWAASTGNDSVPY 405
           +   +D     ++ +  G  Q+A      + PY
Sbjct: 393 LGVYIDAIEWVEMPNTRGMSQYADGGIVATKPY 425


>gi|126176063|ref|YP_001052212.1| deoxyribodipyrimidine photolyase-like protein [Shewanella baltica
           OS155]
 gi|125999268|gb|ABN63343.1| deoxyribodipyrimidine photolyase-related protein [Shewanella
           baltica OS155]
          Length = 521

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 84/249 (33%), Gaps = 21/249 (8%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQA 203
           IL    +       F  +  Q L   D++ LP P   +  +T  +      +        
Sbjct: 171 ILMQEGKPLGGQWNFDASNRQKLKTQDIKVLPEPLMFSFDVTEILARLERHQIPTMGRID 230

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSP 256
              ++PI    +L +L  FC+  +  +   +D    Q         S+LS  L+  ++SP
Sbjct: 231 APLLWPINRAQSLTLLTYFCQVCLPSFGRFQDAMTAQHPAKWSLYHSRLSFSLNSKLISP 290

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKI 314
            +  N   + +        +    ++ + L WRE+ R +  A  P               
Sbjct: 291 LEVINAAIDSYQTNAEIDIAQIEGFVRQILGWREYVRGIYWANMPQYASTNALNAHG--- 347

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                  L   +  G T    +  A+ Q     + H+  R++          ++    +E
Sbjct: 348 ------TLPDYFWHGDTKMNCMRQALSQSLDFAYAHHIQRLMVIGNFCLLTEIEPNQVDE 401

Query: 375 YFMSQLLDG 383
           +++   +D 
Sbjct: 402 WYLGVYVDA 410


>gi|260778084|ref|ZP_05886977.1| DNA photolyase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606097|gb|EEX32382.1| DNA photolyase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 514

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 80/250 (32%), Gaps = 21/250 (8%)

Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQ 202
           SIL    +       +       L  AD+  LP P +    +T                 
Sbjct: 163 SILMDDGKPKGGKWNYDANNRNKLKAADIDRLPTPLMFGNDVTEIRASLERHNISTIGQL 222

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLS 255
               ++PI    +L +L  FC   +  +   +D              S+LS  L+  +L 
Sbjct: 223 EGPLLWPINRNQSLTLLAHFCSVCLPNFGRFQDAMTQAHESKWSLYHSRLSFALNSKMLH 282

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEK 313
           P +  +     +        S A  ++ + L WRE+ R    A  P       F      
Sbjct: 283 PLEVIDSALSAYESNPDIDISQAEGFIRQILGWREYIRGVYWANMPDYAEHNHFDAKR-- 340

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
                  HL + +  G T    +  A+ Q     + H+  R++          +D    +
Sbjct: 341 -------HLPEYFWSGETKMACMKEAIGQSLDFAYAHHIQRLMVTGNFCLLTEIDPAQVD 393

Query: 374 EYFMSQLLDG 383
           E+++   +D 
Sbjct: 394 EWYLGIYVDA 403


>gi|57340056|gb|AAW50015.1| hypothetical protein FTT0847 [synthetic construct]
          Length = 526

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 70/181 (38%), Gaps = 20/181 (11%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
            + AL  L  F KE++  + + +D      A    S +S Y++ G+L P +C     + +
Sbjct: 240 REQALEALDLFVKERLSDFGDYQDAMLEGQAWMYHSHISMYINSGLLLPMECIKAAVKAY 299

Query: 268 VDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLL 323
            +    P +    ++ + L WREF R +            ++  T K+    W+ ++ + 
Sbjct: 300 YN-GNAPLNAVEGFIRQILGWREFVRGIYWLKMPGYRDMNYLGATRKLPSFYWDANNKMN 358

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             ++            +++     + H+  R++          +D +   E+++    D 
Sbjct: 359 CLYQ-----------CVKETKQNAYAHHIQRLMVLGNFALLAGIDPKYVNEWYLLVYADA 407

Query: 384 D 384
            
Sbjct: 408 Y 408


>gi|262174011|ref|ZP_06041688.1| DNA photolyase [Vibrio mimicus MB-451]
 gi|261891369|gb|EEY37356.1| DNA photolyase [Vibrio mimicus MB-451]
          Length = 516

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 83/258 (32%), Gaps = 28/258 (10%)

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS----NIP 194
           S L+ P        +       F       L   DL +LP P +R   P++         
Sbjct: 163 SYLMEPD------GKPEGGQWNFDADNRNKLKAQDLLNLPAP-LRFDNPISSIKARLERH 215

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSP 247
                       ++PI    AL +L  FC+  +  +   +D    +         S+L+ 
Sbjct: 216 GIESMGRVGDSLLWPINRGQALSLLAHFCQHCLTNFGRFQDAMTAEHPHSWSLYHSRLAF 275

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGK 305
            L+  +LSPR+      E +         +    ++ + L WRE+ R +          +
Sbjct: 276 ALNCKLLSPREVIETAIETYRLAQGGISLAQIEGFVRQILGWREYVRGMYWSNMPSYKTR 335

Query: 306 PFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDL 365
             +     +           +  G T    +  A+ Q    G+ H+  R++         
Sbjct: 336 NHLQALRPLP--------GYFWHGQTHMRCLQQAITQSLDFGYAHHIQRLMVTGNFALLT 387

Query: 366 LVDWRIGEEYFMSQLLDG 383
             +    + +++   +D 
Sbjct: 388 ECNPDQVDAWYLGIYIDA 405


>gi|115314261|ref|YP_762984.1| deoxyribodipyrimidine photo-lyase family protein [Francisella
           tularensis subsp. holarctica OSU18]
 gi|115129160|gb|ABI82347.1| probable deoxyribodipyrimidine photo-lyase family protein
           [Francisella tularensis subsp. holarctica OSU18]
          Length = 509

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 70/179 (39%), Gaps = 20/179 (11%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
            + AL  L  F KE++  + + +D      A    S +S Y++ G+L P +C     + +
Sbjct: 232 REQALEALDLFVKERLSDFGDYQDAMLEGQAWMYHSHISMYINSGLLLPMECIKAAVKAY 291

Query: 268 VDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLL 323
            +    P +    ++ + L WREF R +            ++  T K+    W+ ++ + 
Sbjct: 292 YN-GNAPLNAVEGFIRQILGWREFVRGIYWLKMPGYRDMNYLGATRKLPSFYWDANTKMN 350

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
             ++            +++     + H+  R++          +D +   E+++    D
Sbjct: 351 CLYQ-----------CVKETKQNAYAHHIQRLMVLGNFALLAGIDPKYVNEWYLLVYTD 398


>gi|313200807|ref|YP_004039465.1| deoxyribodipyrimidine photolyase-like protein [Methylovorus sp.
           MP688]
 gi|312440123|gb|ADQ84229.1| deoxyribodipyrimidine photolyase-related protein [Methylovorus sp.
           MP688]
          Length = 528

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 119/363 (32%), Gaps = 52/363 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW---LDSYCLQQRVTKLFYNRQYEINEV 117
           I+A++    + L + G   +Y    +  +  +    L++     + + + Y      +E 
Sbjct: 69  IFAAMRHFSQQLKRAGHRVRYIAIDDASNRQQLTTNLEALIAHYQASTMQYQ---APDEW 125

Query: 118 RRDKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVY---TPFRKALIQNLV--- 170
           R D LL       +V     D          +    +  K +     +R    Q+ V   
Sbjct: 126 RLDHLLAAWAASCQVPVTMVDSEHFYTTRQTVAAQFKGRKQWLMEHFYRTQRRQHGVLMT 185

Query: 171 --------QADLRSLPVPAIRLTGPVTPSNIPRFFDYPF---------------QAIDPM 207
                   Q +       A+  T P+     P+                     QA    
Sbjct: 186 ADDQPEGGQWNFDHDNRKALPATQPLLADMRPQHDHQALWQTIVASGAAHFGDPQAEALR 245

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           +P+  + AL  L  F  + +  + + +D  + +G     S LS  L++ +L+PR+     
Sbjct: 246 WPLSREEALAQLEVFINQGLPLFGDYQDALSTRGWRLFHSLLSFALNVKMLNPREVVAAA 305

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
           +  +    + P S A  ++ + L WRE+ R    A  P               EW     
Sbjct: 306 EAAWRQGKV-PLSAAEGFIRQILGWREYVRGVYWAQMPGYTEANALGHSRPLPEWFW--- 361

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
                  G T    + +A+ Q     + H+  R++          +D +    +++   +
Sbjct: 362 ------TGKTRMACVASAITQSLQHAYAHHIQRLMVIGNFALLAGLDPQALHRWYLGIYI 415

Query: 382 DGD 384
           D  
Sbjct: 416 DAF 418


>gi|22298242|ref|NP_681489.1| hypothetical protein tlr0700 [Thermosynechococcus elongatus BP-1]
 gi|22294421|dbj|BAC08251.1| tlr0700 [Thermosynechococcus elongatus BP-1]
          Length = 147

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 15/149 (10%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYP 299
             S LSPYL++G+L P++  +     + +  + P +    ++ + L WRE+   L  +  
Sbjct: 9   WHSLLSPYLNLGLLHPQEVIDAALGAYSEGQL-PLNSVEGFIRQILGWREYMYGLYHYLG 67

Query: 300 SVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
           +    + F+   + +    W  D   +   +            ++Q+   G+ H+  R++
Sbjct: 68  ADYCQQNFLQHHQPLPAFFWQSDRATMSCLRH----------VLKQIECTGYAHHIQRLM 117

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
             +       +  +  E +F S  +D   
Sbjct: 118 ILANFALITGLAPQEVENWFHSVFIDAYD 146


>gi|56236496|gb|AAV84604.1| cryptochrome-type photoreceptor [Setosphaeria turcica]
          Length = 89

 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAI-------QGTSQLSPYLSIGVLSPRQCWNR 262
            GE  AL  L +    +   Y    + P         Q T+ LSP++  G LS R  + R
Sbjct: 4   GGESVALQALDEIIANE--EYTATFEKPNTAPTAFEPQSTTLLSPHMHFGSLSCRLFYWR 61

Query: 263 LKEEFVDLLIKPKSGAFSWLNELIWRE 289
            ++       K      S   +L++R+
Sbjct: 62  AQDVADKYKGKASKPPTSLTGQLLFRD 88


>gi|118496972|ref|YP_898022.1| deoxyribodipyrimidine photolyase-related protein [Francisella
           tularensis subsp. novicida U112]
 gi|194324201|ref|ZP_03057975.1| deoxyribodipyrimidine photolyase-related protein [Francisella
           tularensis subsp. novicida FTE]
 gi|118422878|gb|ABK89268.1| deoxyribodipyrimidine photolyase-related protein [Francisella
           novicida U112]
 gi|194321648|gb|EDX19132.1| deoxyribodipyrimidine photolyase-related protein [Francisella
           tularensis subsp. novicida FTE]
          Length = 509

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 86/248 (34%), Gaps = 22/248 (8%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI-PRFFDYPFQAID 205
           +L++          +     +          P  +          N+  + F   F  I+
Sbjct: 165 LLDNDGNPEGGQWNYDSQNRKTPSSDMQIPKPYKSTADDITKRVINLVEKTFANNFGDIE 224

Query: 206 PM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCW 260
           P  + +  + AL  L  F  E++  + + +D      A    S +S Y++ G+L P +C 
Sbjct: 225 PFNYAVTREQALEALDLFINERLSSFGDYQDAMLEGQAWMYHSHISMYINSGLLLPMECI 284

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---W 316
              ++ +      P +    ++ + L WREF R +            ++  T K+    W
Sbjct: 285 KAAEKAYYK-GNAPLNAIEGFIRQVLGWREFVRGVYWLKMPDYRDMNYLEATRKLPSFYW 343

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
           +  + +   ++            +++     + H+  R++          +D +   E++
Sbjct: 344 DTKTKMNCLYQ-----------CVKETKQNAYAHHIQRLMVLGNFALLAGIDPKYVNEWY 392

Query: 377 MSQLLDGD 384
           +    D  
Sbjct: 393 LLVYADAY 400


>gi|84385648|ref|ZP_00988679.1| hypothetical protein V12B01_25979 [Vibrio splendidus 12B01]
 gi|84379628|gb|EAP96480.1| hypothetical protein V12B01_25979 [Vibrio splendidus 12B01]
          Length = 519

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 63/399 (15%), Positives = 130/399 (32%), Gaps = 58/399 (14%)

Query: 31  HNSDAKVIAVFIATPEQWRQHGISARQ-SHFIYASLLQVQKSLSQKG---IVFQYHQCSN 86
              D +VI + IA  +Q   +  S  Q     ++++      L Q+G   +       + 
Sbjct: 22  QQVDDEVIYI-IAELKQETDYVASHIQKVAAFFSAMGYFADELKQQGHQVLHLTLDDTTQ 80

Query: 87  FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146
           F++    L  Y  +    K  Y R  E   + +   L+     +  C +  +  L P   
Sbjct: 81  FENLEALLQHYAHEFGAEKFEYLRPDEYRLLEQMNKLKLTNATKGCCDT--EHFLFPFEE 138

Query: 147 I-----LNHALQMYKVYTPFRKAL--------------------IQNLVQADLRSLPVP- 180
           I      +  + M   Y   RK                       + L + D+ SLP P 
Sbjct: 139 IEQQFPKDKHIMMEHFYRRMRKRFDILLEDGKPVGGKWNYDANNRKKLKKQDIESLPQPL 198

Query: 181 --AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             A  ++  +      +           ++P+    +L +L  FC+  +  + + +D   
Sbjct: 199 MFANDISAILERIEHHQVQTIGEVGDQLLWPVNRAQSLSLLAHFCQVCLPLFGQFQDAMT 258

Query: 239 IQGTSQLSPY-------LSIGVLSPRQCWNRLKEEFVDLLIKPK-----SGAFSWLNE-L 285
            +  S+ S Y       L+  +LSP++  +     +             +    ++ + L
Sbjct: 259 TEHDSKWSLYHSRISFSLNSKLLSPQEVIDAALSAYQASSKLNAPTIDIAQVEGFVRQIL 318

Query: 286 IWREFYRH-LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
            WRE+ R    A  P+      +           D  L   +  G T    +  A+ Q  
Sbjct: 319 GWREYIRGVYWANMPAYANKNHYAA---------DRQLPHYFWDGQTKMNCMKNAIDQSL 369

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
              + H+  R++          +     + +++   +D 
Sbjct: 370 EFAYAHHIQRLMITGNFCLITGMAPDQVDSWYLGIYVDA 408


>gi|254372341|ref|ZP_04987832.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570070|gb|EDN35724.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 509

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 84/248 (33%), Gaps = 22/248 (8%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
           +L++          +     +         +     A  +T  V       F D      
Sbjct: 165 LLDNDGNPEGGQWNYDSQNRKTPSSDMQIPKPYKSTADDITKRVIELVEQTFVDNFGNIK 224

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCW 260
              + +  + AL  L  F  E++  + + +D      A    S +S Y++ G+L P +C 
Sbjct: 225 PFNYAVTREQALEALDLFINERLSSFGDYQDAMLEGQAWMYHSHISMYINSGLLLPMECI 284

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---W 316
               + + +    P +    ++ + L WREF R +            ++  T K+    W
Sbjct: 285 KAAVKAYYNGQA-PLNAVEGFIRQILGWREFVRGVYWLKMPDYRDMNYLEATRKLPSFYW 343

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
           + ++ +   ++            +++     + H+  R++          VD +   E++
Sbjct: 344 DANTKMNCLYQ-----------CVKETKQNAYAHHIQRLMVLGNFALLTGVDPKYVNEWY 392

Query: 377 MSQLLDGD 384
           +    D  
Sbjct: 393 LLVYADAY 400


>gi|328675521|gb|AEB28196.1| hypothetical protein FN3523_0339 [Francisella cf. novicida 3523]
          Length = 491

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 87/248 (35%), Gaps = 22/248 (8%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPA-IRLTGPVTPSNIPRFFDYPFQAID 205
           +L++  +       +     +          P  + +          + + F   F  I+
Sbjct: 147 LLDNDGKPEGGQWNYDSQNRKMPSTDTKVPEPYKSTVDDITKRVIELVEKTFGNNFGDIE 206

Query: 206 PM-FPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCW 260
           P  + +  + AL  L  F KE++  + + +D      A    S +S Y++ G+L P +C 
Sbjct: 207 PFNYAVTREEALEALYLFIKERLSSFGDYQDAMLEGQAWMYHSHISMYINSGLLLPLECI 266

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---W 316
              +  + +      +    ++ + L WREF R +            ++  T K+    W
Sbjct: 267 KAAESAYYN-GNAHLNAVEGFIRQILGWREFVRGVYWLKMPDYRDMNYLEATRKLPNFYW 325

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
           + D+ +    +            +++     + H+  R++          +D +   E++
Sbjct: 326 DADTKMNCLHQ-----------CIKETKQNAYAHHIQRLMVLGNFALLAGIDPKYVNEWY 374

Query: 377 MSQLLDGD 384
           +    D  
Sbjct: 375 LLVYADAY 382


>gi|254468054|ref|ZP_05081460.1| deoxyribodipyrimidine photolyase family protein [beta
           proteobacterium KB13]
 gi|207086864|gb|EDZ64147.1| deoxyribodipyrimidine photolyase family protein [beta
           proteobacterium KB13]
          Length = 509

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 67/423 (15%), Positives = 151/423 (35%), Gaps = 55/423 (13%)

Query: 43  ATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQR 102
            TPE         +   F++A +    K L Q+G V +Y +  + D+   +  +      
Sbjct: 33  ITPEMNYAKHHIQKMLAFMHA-MRNFAKELEQEGHVVRYIKLKDPDNQQSFYKNILKLIE 91

Query: 103 VTKLFYNRQYE-INEVRRDKLLEKRLQH-RVICKSF-DDSVLLPPGSILN-----HALQM 154
           +       +Y+  +E R D+ ++K      +  +S+  +  L     + +        +M
Sbjct: 92  INPDINKFEYQVPDEYRLDQEMKKITDQIGLEHQSYSTEHFLTHRQDLRDFFTKKKIWRM 151

Query: 155 YKVYTPFRKAL-----------IQNLVQADLRSLPVPAIRLTGPVT--------PSNIPR 195
            + Y   RK              +     D R    P   +   +            I +
Sbjct: 152 EEFYRHIRKKYSILMVGDKPIGDKWNYDQDNRKKWDPKQSIPDRIKFNHDVGHLKDEIDK 211

Query: 196 FFDYPFQAIDPM---FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPY 248
                  ++D     +P  E+ +L +L  F +  +  + + +D  + +      S +S  
Sbjct: 212 LEIGYIGSVDTKNFNWPSNEEESLQVLNHFIRFSLDKFGDFQDAMSNENPYLFHSLISFA 271

Query: 249 LSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPF 307
           L+  +LSP +    + EE +   +   S    ++ ++I WRE+ R +            F
Sbjct: 272 LNTKMLSPLKIAETV-EENLKKDLSNLSAVEGFIRQIIGWREYIRGVYWAKMPEYGQSNF 330

Query: 308 IPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLV 367
           + +  K+         + +  G T    +  +++Q     + H+  R++     +    V
Sbjct: 331 LKFKNKLP--------EFFWHGKTNMNCLQKSIQQSLQHAYAHHIQRLMILGNFMLLSEV 382

Query: 368 DWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGT 423
           D ++  E+F++  +D     ++ +  G  Q+A      + PY         G   +  G 
Sbjct: 383 DPKLVHEWFLAIYIDAIEWVEMPNVLGMSQYADGGLLATKPY------VSSGSYINKMGN 436

Query: 424 FIR 426
           + +
Sbjct: 437 YCK 439


>gi|302134362|ref|ZP_07260352.1| hypothetical protein PsyrptN_23407 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 299

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 83/230 (36%), Gaps = 33/230 (14%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRL 263
           +P+ + +A  +   F    +  + + +D  A        +++S  L+IG+L  RQ  + +
Sbjct: 14  YPVTQADAQALWEYFLDFGLAGFGDYQDAMATDEPFLFHARISAALNIGLLDLRQICSDV 73

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSH 321
           +  +    +   + A  ++ +LI WRE+ R +     P    G  F              
Sbjct: 74  ESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMPDYASGNLFG---------NSRP 123

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-ASFLVKDLLVDWRIGEEYFMSQL 380
           L + +  G T    +  A+ Q     + H+  R++   +F +   +V  +I E Y    +
Sbjct: 124 LPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTGNFALLAGIVPEQICEWYLAIYM 183

Query: 381 LDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
              D     +  G    A      S PY                G +I+ 
Sbjct: 184 DAFDWVELPNTLGMVMHADGGYLGSKPYC-------------ASGQYIKR 220


>gi|81999775|sp|Q5UP28|YR853_MIMIV RecName: Full=Uncharacterized protein R853
 gi|55417461|gb|AAV51111.1| unknown [Acanthamoeba polyphaga mimivirus]
          Length = 129

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 230 YVEQRDIPAIQ-GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWR 288
           Y +  D        S +SP L+ G+++PR   +++ +++             ++ +L+WR
Sbjct: 2   YEDAIDFDDPYLFHSVISPQLNSGLITPRYVLDKVIDKYNKSNTDLLYEVEGYIRQLVWR 61

Query: 289 EFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           E+ R ++  Y    M K +     +I         + W  G TG   +D A+      G
Sbjct: 62  EYSR-MLYRYIRKDMMKNYFGNKNRIS--------EIWYTGNTGIEPVDLAISSAFQYG 111


>gi|152967026|ref|YP_001362810.1| deoxyribodipyrimidine photolyase-related protein [Kineococcus
           radiotolerans SRS30216]
 gi|151361543|gb|ABS04546.1| deoxyribodipyrimidine photolyase-related protein [Kineococcus
           radiotolerans SRS30216]
          Length = 510

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 55/379 (14%), Positives = 124/379 (32%), Gaps = 31/379 (8%)

Query: 30  CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGI----VFQYHQCS 85
               D  V+ +   + + +R+     R++H I ++L      L ++ +           +
Sbjct: 35  LDAPDQPVLLL--ESTDVFRRGRFHRRKAHLILSALRHRAAELGEQAVFVQAPTYREGLA 92

Query: 86  NFDDSIEWLD-------SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD 138
              +++   D        +  +    ++  +R + ++E +     E+R   R++ + F  
Sbjct: 93  ACGEAVSVCDPTSYPARRFVRRLPGVEVLASRGFVVSERQFRGWAERRGGKRLLMEDFYR 152

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA--DLRSLPVPAIRLTGPVTPSNIPRF 196
            V    G +++ A  +   +    +       Q   DL     P          +++ R+
Sbjct: 153 DVRRFHGLLMDGAEPVGGTWNYDHENRSGPPRQEKLDLAEPRWPVEDDIDAEVRADLDRW 212

Query: 197 F-----DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSP 247
                 ++        F +  + AL +LR+F  E++  +    D           S LS 
Sbjct: 213 ERDDGVEFTGSDGPRRFAVTRREALGVLRRFLDERLEQFGTYEDAMLAGDPWMAHSLLSA 272

Query: 248 YLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPF 307
             ++G+L P +   R +E      ++  S        + WR +  HL          +  
Sbjct: 273 PQNLGLLDPLEIARRAEEHGRAHGVRLASVEGFVRQVVGWRSYTWHLYWHLGEGYKQRNA 332

Query: 308 IPWTEKIE-WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLL 366
           +     I  W  D                +   + Q+   GW H+  R++          
Sbjct: 333 LGSERTIPDWFGDLDADAVEAN------CLRHVLGQVRDEGWTHHIPRLMVLGNWGLQRG 386

Query: 367 VDWRIGEEYFMSQLLDGDL 385
                  ++F    +DG  
Sbjct: 387 YRPAELADWFWRNFVDGYD 405


>gi|257051353|ref|YP_003129186.1| deoxyribodipyrimidine photolyase-related protein [Halorhabdus
           utahensis DSM 12940]
 gi|256690116|gb|ACV10453.1| deoxyribodipyrimidine photolyase-related protein [Halorhabdus
           utahensis DSM 12940]
          Length = 510

 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 61/400 (15%), Positives = 121/400 (30%), Gaps = 49/400 (12%)

Query: 30  CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89
               D  V+   I       +     ++   +++++   +  L   G    YHQ   F D
Sbjct: 18  AERPDEPVLL--IEAHAFAERLPYHPQKLTLVFSAMRHFRDELRDAGRDVHYHQVETFGD 75

Query: 90  SIEW----------------------LDSYCLQQRVT-KLFYNRQYEINEVRRDKLLEKR 126
            ++                       L S   ++  + ++  N  +  +    D     R
Sbjct: 76  GLDAHFDDTPADDLRMMCPAGGDADRLRSLVEERGGSLEIVENSLFCCSRKLFDDWAADR 135

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                  + F   +    G +++    +   +                   P        
Sbjct: 136 TGDNYRHEDFYRHIRRETGYLMDDDEPVGGEWNYDEDNRETPPDDWTPPGPPTFERDEIT 195

Query: 187 PVTPSNIPRFFD-------YPFQAIDP---MFPIGEQNALHILRKFCKEKVYYYVEQRDI 236
               S +   FD       Y     DP    +P+  Q AL  L  FC +++  +   +D 
Sbjct: 196 RDVDSWVADRFDGSYDEAPYGGSWADPEAFRWPVTRQQALSALEDFCTDRLATFGSYQDA 255

Query: 237 PAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFY 291
                     S LS  L++G+L PR+   R  + F +    P +    ++ + L WREF 
Sbjct: 256 MQRDSWAMSHSLLSSSLNLGLLDPREVIERAIDTF-ERGDAPLNSVEGFVRQVLGWREFM 314

Query: 292 RHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
           RH+          +         + N    L   +  G T    +   +  +   G+ H+
Sbjct: 315 RHVY--------RRERDELGAANQLNATEPLPDFFWTGETDMACLADVIEGVRRRGYSHH 366

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGG 391
             R++  S       ++ R    +F +  +D         
Sbjct: 367 IERLMVLSNFGTTFGIEPRALNRWFHAAYVDAFHWVTTPN 406


>gi|126464543|ref|YP_001045656.1| deoxyribodipyrimidine photolyase-related protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126106354|gb|ABN78884.1| deoxyribodipyrimidine photolyase-related protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 508

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 69/404 (17%), Positives = 135/404 (33%), Gaps = 61/404 (15%)

Query: 17  DLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG 76
           DLR     AL AA   +D  V+A  +     +  H    ++   I A++ +  + L ++G
Sbjct: 15  DLR-----ALRAADPAADLVVMA-EVMEEGTYVPHH--PQKIALILAAMRKFARRLQERG 66

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF 136
               Y +  + +           +   T      +  +     D  L + L+   +   F
Sbjct: 67  FRVAYSRLDDPETGPSIGAELLRRAAETG----AREAVATRPGDWRLIEALEALPLPVRF 122

Query: 137 --DDSVLLPPGSILNHALQMYKVYTPFRKALIQN-------------------------- 168
             DD  L P       A    ++   +    ++                           
Sbjct: 123 LPDDRFLCPADEFARWAEGRKQLRMEWFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPA 182

Query: 169 ----LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCK 224
               L    LR  P   +R    +  +  PR F    +     +P     AL  L  F +
Sbjct: 183 APDLLRPRPLRFEPDAEVRAVLDLVEARFPRHF---GRLRPFHWPTDRAEALRALDHFIR 239

Query: 225 EKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFS 280
           E +  + +++D           + LS  +++G+L P +   R + E+ +    P +    
Sbjct: 240 ESLPRFGDEQDAMLADDPFLSHALLSSSMNLGLLGPMEVCRRAETEWREGRA-PLNAVEG 298

Query: 281 WLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAA 339
           ++ + L WRE+ R + A      M    +  +  +        L   K   T    + AA
Sbjct: 299 FIRQILGWREYVRGIWALSGPDYMRSNGLGHSAALP------PLYWGKP--TQMACLSAA 350

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           + Q   + + H+  R++          VD     E+++S  +D 
Sbjct: 351 VAQTRDLAYAHHIQRLMVTGNFALLAGVDPAEVHEWYLSVYIDA 394


>gi|149376006|ref|ZP_01893772.1| photolyase [Marinobacter algicola DG893]
 gi|149359643|gb|EDM48101.1| photolyase [Marinobacter algicola DG893]
          Length = 510

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 54/396 (13%), Positives = 115/396 (29%), Gaps = 47/396 (11%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY--- 81
           AL  A    D  V+A  +     +  H    ++   +++++    + L   G    Y   
Sbjct: 18  ALENADKERDRIVMA-EVHDEASYTNHHK--KKLVLLFSAMRHFARRLEADGWRVHYQTY 74

Query: 82  HQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKS------ 135
           H  +        + +   +    ++      E     +      RL  +V  +       
Sbjct: 75  HPDNESQSLEAVIANQLKETGADRVTTTECGEWRLHEQVSQWHGRLGAQVEIRPDTRFIA 134

Query: 136 -------------------FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
                              F   +    G ++    +       F     +         
Sbjct: 135 SKQGFSDWAEGRKQLRMEFFYREMRRKTGLLMTPDGKPEGGEWNFDADNRRKWTGKPPAP 194

Query: 177 LP--VPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
            P  V    +T  V       F D+     D  F +  ++A   L  F    +  + + +
Sbjct: 195 APFRVEPDEVTREVIDLVEAHFTDHFGTTEDFHFAVTHEDAEQALEYFIDFALPCFGDFQ 254

Query: 235 DIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWRE 289
           D  +        S LSPY++ G+L P        + +      P +    ++ + L WRE
Sbjct: 255 DAMSDDEDWLFHSILSPYINCGLLDPLAVCEAAAQAWYSGRA-PINAVEGFIRQILGWRE 313

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           F R +   +      +  +  T  + W         +  G T    +  A+       + 
Sbjct: 314 FVRGIYWLHMPEYAQENRLGNTRSLPW--------FYWTGDTKMRCMHKAIDATRRNAYA 365

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
           H+  R++          V      +++++   D   
Sbjct: 366 HHIQRLMVTGNFALLAGVKPEEICDWYLAVYADAYD 401


>gi|262164851|ref|ZP_06032589.1| DNA photolyase [Vibrio mimicus VM223]
 gi|262027231|gb|EEY45898.1| DNA photolyase [Vibrio mimicus VM223]
          Length = 516

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 99/330 (30%), Gaps = 48/330 (14%)

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV-TKLFYNRQYEINEVRRDKLLEKR 126
           + + L+   +      C + +  +        Q      +     Y        + + KR
Sbjct: 110 LLEQLANLRLPEVIIGCVDTEHFLLPFSEITEQFPAGKAVLMEHFY--------RRMRKR 161

Query: 127 LQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG 186
                       S L+ P        +       F       L   DL +LP P +R   
Sbjct: 162 F-----------SYLMEPD------GKPEGGQWNFDADNRNKLKAQDLLNLPAP-LRFDN 203

Query: 187 PVTPS----NIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-- 240
           P++                     ++PI    AL +L  FC+  +  +   +D    +  
Sbjct: 204 PISSIKARLERHGIESMGRVGDSLLWPINRAQALSLLAHFCQLCLPNFGRFQDAMTAEHP 263

Query: 241 -----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRH 293
                  S+LS  L+  +LS R+      E +         +    ++ + L WRE+ R 
Sbjct: 264 HSWSLYHSRLSFALNCKLLSSREVIETAIETYRVAQGGISLAQIEGFVRQILGWREYVRG 323

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +          +  +  +  +           +  G T    +  A+ Q    G+ H+  
Sbjct: 324 MYWSNMPSYKTRNHLQASRPLP--------GYFWHGQTHMRCLQRAITQSLDFGYAHHIQ 375

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           R++           +    + +++   +D 
Sbjct: 376 RLMVTGNFALLTECNPDQVDAWYLGIYIDA 405


>gi|89890452|ref|ZP_01201962.1| deoxyribodipyrimidine photolyase-related protein [Flavobacteria
           bacterium BBFL7]
 gi|89517367|gb|EAS20024.1| deoxyribodipyrimidine photolyase-related protein [Flavobacteria
           bacterium BBFL7]
          Length = 513

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 122/371 (32%), Gaps = 54/371 (14%)

Query: 77  IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY-EINEVRRDKLLEKRLQH-RVICK 134
           I +      N  D +E L+    +Q++ K     +Y   +E R D+ L++  +   +  +
Sbjct: 69  IYYHLDDDKNTQDLVENLNQIIKEQKIEKF----EYLAPDEYRLDQQLKEFCKSLNIEWQ 124

Query: 135 SFDDSVLLPPG---SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS 191
            +D                  +   +   +R    ++ +  D    P            +
Sbjct: 125 GYDTEHFFTKRKDVEKFFEGKKRMTMEYFYRDMRKKHQILIDDDLEPEGGKWNYDHSNRN 184

Query: 192 NIPRFFDYPFQA-----------------------IDPM---FPIGEQNALHILRKFCKE 225
                 D P +                        ID     +P   Q+ L +L  FC+ 
Sbjct: 185 QWKGETDIPHERGFRKDVTSIVKLLHKADVKTMGRIDEHNFNWPTTRQDGLDVLNYFCEN 244

Query: 226 KVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK--PKSGAF 279
            +  +   +D           S+LS  ++  +LSPR+  + +   F +        S   
Sbjct: 245 LLIEFGTYQDAMHTDQHYLYHSRLSFAMNCKLLSPREVIDAVLVRFRESGKPTIDISQVE 304

Query: 280 SWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDA 338
            ++ + L WREF R +          K    +  + +    + L + +  G T    +  
Sbjct: 305 GFIRQILGWREFMRGIYW--------KEMPDYQSQNQLANRNQLPEFYWTGKTKMNCLSN 356

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQW 394
           A+       + H+  R++         + +    +E+++   +D     ++ +  G  QW
Sbjct: 357 AINNSLDNAYAHHIQRLMVTGNYALLTMTEPSYVDEWYLGIYIDAIEWVEITNTRGMSQW 416

Query: 395 AASTGNDSVPY 405
           A      + PY
Sbjct: 417 ADGGIVATKPY 427


>gi|225010912|ref|ZP_03701379.1| deoxyribodipyrimidine photolyase-related protein [Flavobacteria
           bacterium MS024-3C]
 gi|225004959|gb|EEG42914.1| deoxyribodipyrimidine photolyase-related protein [Flavobacteria
           bacterium MS024-3C]
          Length = 514

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 98/291 (33%), Gaps = 22/291 (7%)

Query: 128 QHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP 187
           + ++I + F   +      ++     +   +   ++   +   Q  + +    +  L   
Sbjct: 148 KKQLIMEPFYRQMRKEHQILMTPEGPLGGKWNYDQENRKKWKGQIPVPTGFPVSNNLLEI 207

Query: 188 VTPSNIPRFFDYPF-QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GT 242
                           A    +PI +  A  IL  FC+  + Y+ + +D    Q      
Sbjct: 208 YESIQSQSIQTIGSIDASQFNWPINKNQAQQILDYFCENLLPYFGDFQDAMHTQEKFLFH 267

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK--PKSGAFSWLNE-LIWREFYRHLMAF-Y 298
           S+LS  L+  ++SP++  +++ + +          +    ++ + L WRE+ R +     
Sbjct: 268 SRLSFALNSKIISPKEVVDQVLKTYYGQKEDKISLNQVEGFVRQILGWREYMRGIYWREM 327

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P                 +    L   +    T    +  +++Q     + H+  R++  
Sbjct: 328 PGYAKKNAL---------DNHGKLPDFYWTAETKMNCMHQSIKQSLEHSYAHHIQRLMVT 378

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPY 405
                         +++++   +D     ++ +  G  Q+A      + PY
Sbjct: 379 GNYALLTQTHPDEVDKWYLGIYIDAIEWVEMPNTRGMSQFADGGLLATKPY 429


>gi|85703663|ref|ZP_01034767.1| hypothetical protein ROS217_23017 [Roseovarius sp. 217]
 gi|85672591|gb|EAQ27448.1| hypothetical protein ROS217_23017 [Roseovarius sp. 217]
          Length = 509

 Score = 53.5 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 134/439 (30%), Gaps = 52/439 (11%)

Query: 22  DNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81
           D  AL AA    D  V+A  +    ++  H    ++   I +++      L   G    Y
Sbjct: 16  DLSALRAADKVRDVVVMA-EVMDEGRYVPHH--PKKIALILSAMRHFADELQADGWQVAY 72

Query: 82  HQCSNFDDSIEWLDSYCL---QQRVTKLFYNR--QYEINEVRRDK--LLEKRLQHRVIC- 133
            +  + +     +        +    ++   +  ++ +     D    L +    R IC 
Sbjct: 73  TRLDDPEAMPSIVGELIRRAEEYGAGEVIATQPGEWRLIAALSDAPLTLRQLPDDRFICS 132

Query: 134 -KSFDD--------SVLLPPGSILNHALQMYKVYTPFRKAL---IQNLVQADLRSLPVPA 181
            + FD          +      +      M +   P          N  +A    L    
Sbjct: 133 LEEFDRWAEGRKELRMEYFYREMRRKTGLMMEGDQPAGGKWNFDHDNRKRAQADLLREGP 192

Query: 182 IRLTGPVTPSNIPRFFDY----PFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRD- 235
           +R       + +    +      F A+ P +      +A      F    +  + + +D 
Sbjct: 193 LRFEPDKITAEVLNLVESRFAGNFGALHPFWFGVTRADAAQAFDHFALHLLPGFGDTQDA 252

Query: 236 ---IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
                A    S +S Y++IG+LSP     R+ EE+    +   +G       + WRE+ R
Sbjct: 253 MLEGDAFLHHSVISIYMNIGLLSPTDICARVVEEWQAGRVPINAGEGYIRQVIGWREYMR 312

Query: 293 HLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHN 351
            L     P            +         L   +  G T    +  A+       + H+
Sbjct: 313 GLYFREGPDYVTRNALGHRRD---------LPAMFWGGETRMTCVAHAVGTTAKEAYAHH 363

Query: 352 RLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD---LASNNGGW-QWAASTGNDSVPYFR 407
             R++          +D     E++++   D      A N  G  Q+A +    S PY  
Sbjct: 364 IQRLMVTGNFALLAGIDPAQVHEWYLAVYADAFEWVEAPNVIGMSQFADAGIIASKPY-- 421

Query: 408 IFNPTIQGKRFDPQGTFIR 426
                  G   D    + R
Sbjct: 422 ----VSSGNYIDKMSDYCR 436


>gi|329849490|ref|ZP_08264336.1| FAD binding domain of DNA photolyase family protein [Asticcacaulis
           biprosthecum C19]
 gi|328841401|gb|EGF90971.1| FAD binding domain of DNA photolyase family protein [Asticcacaulis
           biprosthecum C19]
          Length = 516

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 114/364 (31%), Gaps = 46/364 (12%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRV---TKLFYNRQYE 113
           +  F+++++    ++L + G   +Y +  + D+S           +     ++      E
Sbjct: 51  KIAFLFSAMRHFAQALREAGFNVRYVRLDDDDNSQSLEGEILRAVKALSPDRVVVTEPGE 110

Query: 114 INEVRRDKLLEKRL-------------------------QHRVICKSFDDSVLLPPGSIL 148
                  + L   L                         +  +  + F   +    G +L
Sbjct: 111 WRLRESFEALRLALPVLFEILPDTRFLCSHSEFNAWAEGRTTLRLEHFYRDMRRRTGLLL 170

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTP--SNIPRFFDYPFQAIDP 206
               +       F     +    ADL   P  + R           +   F   F  ++P
Sbjct: 171 ELDGKPSGGQWNF-DKDNRKPAPADLTIPPRISFRKDAITQEVLDLVRTRFPDGFGRLEP 229

Query: 207 -MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWN 261
             F +  + AL  L  F    + ++ + +D           S LS Y++ G+L P +   
Sbjct: 230 FHFAVTRRQALRELDHFIDYILPHFGDHQDAMVEGEPYLYHSLLSTYINAGLLYPLEVCQ 289

Query: 262 RLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           R +  + D    P +    ++ + L WRE+ R +   +    + +  +     + W    
Sbjct: 290 RAEAAWHD-GKAPINAVEGFIRQILGWREYIRGIYWRFMPDYLDRNALNANRPLPW---- 344

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
                +  G T    +   +       + H+  R++          +D     E++++  
Sbjct: 345 ----FYWSGETRMACVAEVVGHTIDHAYSHHIQRLMVTGNFALLAGLDPVAVHEWYLAVY 400

Query: 381 LDGD 384
            D  
Sbjct: 401 ADAY 404


>gi|322782527|gb|EFZ10476.1| hypothetical protein SINV_15449 [Solenopsis invicta]
          Length = 81

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 4/74 (5%)

Query: 59  HFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVR 118
            F+   L  +  SL +        +        + L     +   T L +    E     
Sbjct: 1   RFLLQCLEDLDCSLRKLNSRLFVIRG----QPADALPKLFKEWGTTNLTFEEDPEPFGRV 56

Query: 119 RDKLLEKRLQHRVI 132
           RD  +    +   I
Sbjct: 57  RDHNISALCEELGI 70


>gi|148254402|ref|YP_001238987.1| hypothetical protein BBta_2956 [Bradyrhizobium sp. BTAi1]
 gi|146406575|gb|ABQ35081.1| hypothetical protein BBta_2956 [Bradyrhizobium sp. BTAi1]
          Length = 508

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 123/412 (29%), Gaps = 64/412 (15%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  + +A++   +  L  +G    Y +  +  ++  +       Q   +       E  E
Sbjct: 53  RIAYFFAAMRHFRAELEARGRTVHYMRLDDPANTGAFDSEIARHQAALQPQATIVLEPGE 112

Query: 117 VRRDKLLEKRLQHRVICK----------SFDDSVLLPP---------------GSILNHA 151
            R  + L + L  RV  +           FD      P               G +L+  
Sbjct: 113 FRVREKLRQ-LPQRVELRADRHFLCTADEFDAFTERHPRPIMETFYRAMRRKTGLLLDEG 171

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGP------VTPSNIPRFFDYPFQAID 205
            +             +N         P+P  R   P      V      RF + P +   
Sbjct: 172 GRPVGGS---WNFDAENRKGFGKSRPPIPLARSYAPDAITRDVLKLVAARFSNSPGRLDR 228

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWN 261
              P+   +AL  L  F   ++  +   +D           S+LS  L++ +L PR+   
Sbjct: 229 FDLPVSRVDALTELSDFVAWRLSLFGTYQDAMLSDEPFLYHSRLSGALNLHMLDPREVVE 288

Query: 262 RLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKD 319
                       P +    ++ ++I WREF R +     P                 + D
Sbjct: 289 AALAN----RNAPLNALEGFVRQIIGWREFVRGVYWQRMPDYAEENAL---------DAD 335

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
             + + +  G T    +  A+       + H+  R++        L V       + MS 
Sbjct: 336 LPMPRFYWTGETDMRCLAQAIGHTIDHAYAHHIERLMVLGLFAMLLGVRPYDVHLWHMSM 395

Query: 380 LLDG----DLASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRFDPQ 421
             D      L +  G  Q        + P      Y    +   +  R+DP+
Sbjct: 396 FHDAVDWVSLPNTLGMSQHGDGGVVGTKPYAASGHYIDRMSDHCRNCRYDPK 447


>gi|331227642|ref|XP_003326489.1| cryptochrome 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309305479|gb|EFP82070.1| cryptochrome 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 251

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 4  TTAMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYA 63
          ++ +S  L W   DL + D+ AL  A      ++  V+   P       +   +  F++ 
Sbjct: 2  SSKLSKLLYWFWTDLHVHDSPALIKALELGRVELYPVWCWDPYYIYNTPVGPNRWQFLFQ 61


>gi|328676446|gb|AEB27316.1| hypothetical protein FNFX1_0368 [Francisella cf. novicida Fx1]
          Length = 509

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 69/181 (38%), Gaps = 20/181 (11%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
            + AL  L  F  E++  + + +D      A    S +S Y++ G+L P +C     + +
Sbjct: 232 REQALEALDLFINERLSSFGDYQDAMLEGQAWMYHSHISMYINNGLLLPMECIKAAVKAY 291

Query: 268 VDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLL 323
            +    P +    ++ + L WREF R +            ++  T K+    W+ ++ + 
Sbjct: 292 YNGQA-PLNAVEGFIRQILGWREFVRGVYWLKMPDYRDMNYLEATRKLPSFYWDANTKMN 350

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             ++            +++     + H+  R++          VD +   E+++    D 
Sbjct: 351 CLYQ-----------CVKETKQNAYAHHIQRLMVLGNFALLTGVDPKYVNEWYLLVYADA 399

Query: 384 D 384
            
Sbjct: 400 Y 400


>gi|260774062|ref|ZP_05882977.1| DNA photolyase [Vibrio metschnikovii CIP 69.14]
 gi|260611023|gb|EEX36227.1| DNA photolyase [Vibrio metschnikovii CIP 69.14]
          Length = 514

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 116/364 (31%), Gaps = 53/364 (14%)

Query: 61  IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            + ++ +  ++  ++G   +     +  NF D  + +  Y  Q       Y R    +E 
Sbjct: 52  FFLAMQEFAQARQEEGHQVLYLTLDETQNFSDLPQLIAHYVQQTGAMSFEYQR---PDEY 108

Query: 118 RRDKLLEK-RLQHRVICKSFDDSVLLPPGSI----LNHALQMYKVYTP------------ 160
           R    L   RL + VI     +  LLP   I         +M + +              
Sbjct: 109 RLLAQLANLRLANTVIGCVDSEHFLLPFEEIEQNFPKGKHKMMEHFYRRMRQRFTVLIED 168

Query: 161 ---------FRKALIQNLVQADLRSLPVPAIRLTGP---VTPSNIPRFFDYPFQAIDPMF 208
                    F  +    L   D+  LP P +    P   +   N            D  +
Sbjct: 169 GKPLAGQWNFDASNRNKLKAQDIAQLPEPLLFKNAPSDVLERLNRHGVQTIGHLKGDLFW 228

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRD-----IPAIQG--TSQLSPYLSIGVLSPRQCWN 261
           PI    +L +L  FC+  +  + + +D      PA      S+LS  L+  +L P++  +
Sbjct: 229 PINRAQSLTLLAHFCQVCLPRFGQFQDAMTHLHPAQWSLYHSRLSFALNSKLLHPKEVID 288

Query: 262 RLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNKD 319
                +        +    ++ + L WRE+ R +  A  P           +        
Sbjct: 289 AAVAAYQRESQIDLAQVEGFVRQILGWREYIRGIYWANMPHYAQLNALQATSR------- 341

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
             L   +    T    +  A+ Q     + H+  R++          ++    + +++  
Sbjct: 342 --LPSYFWTAKTKMHCMQRAIGQSLDFAYAHHIQRLMVTGNFCLLTGINPDEVDAWYLGV 399

Query: 380 LLDG 383
            +D 
Sbjct: 400 YVDA 403


>gi|330469635|ref|YP_004407378.1| deoxyribodipyrimidine photolyase-like protein [Verrucosispora maris
           AB-18-032]
 gi|328812606|gb|AEB46778.1| deoxyribodipyrimidine photolyase-like protein [Verrucosispora maris
           AB-18-032]
          Length = 490

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 80/244 (32%), Gaps = 17/244 (6%)

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDP----M 207
              +   T  R+   + + + D+   P+P           ++ R+     + +       
Sbjct: 149 GGRWSFDTENRQPPPKGVERLDVPPPPMPREDDIDAEVREDLDRWEREGIRFVGRDGPRR 208

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           FP+  + A   LR F K ++ ++    D           S LS   ++G+L P       
Sbjct: 209 FPVTAKEAQARLRHFLKHRLPHFGPYEDAMLAGDPWLAHSMLSSSFNLGLLDPMAAIRGA 268

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSH 321
           ++ +    + P      ++ + L WR+F  +L  ++ P                W +D  
Sbjct: 269 EQAYRKEKV-PLPSVEGFIRQILGWRDFVWNLYWYFEPGYQRSNALGARAAMPGWFRDLD 327

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
                 +       +   +  L   GW+H+  R++                 ++F    +
Sbjct: 328 ADAVQAR------CLSDVLADLRDHGWVHHIPRLMVLGNYALQRGWRTAEVVDFFRRSFV 381

Query: 382 DGDL 385
           DG  
Sbjct: 382 DGYD 385


>gi|308049737|ref|YP_003913303.1| deoxyribodipyrimidine photolyase-related protein [Ferrimonas
           balearica DSM 9799]
 gi|307631927|gb|ADN76229.1| deoxyribodipyrimidine photolyase-related protein [Ferrimonas
           balearica DSM 9799]
          Length = 512

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/393 (16%), Positives = 119/393 (30%), Gaps = 56/393 (14%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYE 113
           +    +A++    ++LSQ G   +Y    +    DD    L     Q    +L Y R   
Sbjct: 47  KVCAFFAAMKAFSETLSQDGHRVRYLTLDDTAGVDDLPALLQQQIDQTGALQLEYQR--- 103

Query: 114 INEVRRDKLLEK---------------RLQHRVICKSFDDSVLLPPGSILNHALQ----M 154
            +E R    L                  L    I + F         +      Q    +
Sbjct: 104 PDEYRLLAQLADMSLSVPSQPCDTEHFLLPFDEIDRHFQRDKAHRMETFYRKMRQRFDLL 163

Query: 155 YKVYTPFRKAL------IQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAID 205
            +   P              L   D  S+P P   A  +   +   +  R       +  
Sbjct: 164 MEGNKPLGGKWNYDPLNRHALKPGDWDSIPQPLLFANPVDEIIDRLSRHRVDTIGTLSGP 223

Query: 206 PMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-------TSQLSPYLSIGVLSPRQ 258
            ++P+  + A  +L  FC   +  +   +D    Q         ++LS  L+  +L P +
Sbjct: 224 LLWPVNREQARQLLAHFCHHCLPGFGRFQDALTGQAPHRWSLFHARLSFALNTKLLHPME 283

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKIEW 316
             +     F        +    ++ + L WRE+ R +  A  P       F        W
Sbjct: 284 VLDAAIRAFKQNDGIDLAQIEGFVRQILGWREYVRGIYWANMPGYETRNHFAAHRALPSW 343

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
                       G T    +  A+ Q     + H+  R++        +  D    + ++
Sbjct: 344 FW---------TGDTKMACLHHAISQSLEYAYAHHIQRLMVTGTFALLIGADPDEVDAWY 394

Query: 377 MSQLLDG----DLASNNGGWQWAASTGNDSVPY 405
           +   +D     +L +  G  Q+A      S PY
Sbjct: 395 LGIYIDAIEWVELPNTRGMSQYADGGLLASKPY 427


>gi|126435518|ref|YP_001071209.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           JLS]
 gi|126235318|gb|ABN98718.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           JLS]
          Length = 496

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 111/373 (29%), Gaps = 40/373 (10%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99
           + I      R+     ++ H + ++L    + L  +  +    +   + D++E      L
Sbjct: 32  LLIEADHALRKRRYHRQKLHIVLSALRHADRDLGDRATLL---RSETYTDALERYGRPVL 88

Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEK-------RLQHRVICKSFDDSVLLPPGSILNHAL 152
               T     R   ++ +++  L+          L  +   +   +              
Sbjct: 89  VHEPTSFAAERF--VHRLKQRGLVADILPTPTFALPRKDFEQWAGNRTRFRMEDFYRDQR 146

Query: 153 QMYKVYT----PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF----DYPFQAI 204
           + + V      P       +             + +  P  P           D     +
Sbjct: 147 RRFDVLMSGADPVGNRWNYDEENRHSPPKKRRTLDVPAPYKPREDDIDEEVRRDLDRMDL 206

Query: 205 DP-------MFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGV 253
           D        +F +    A   L +F + ++  + +  D           S LS  L++GV
Sbjct: 207 DTVGADGPRLFAVTPAEAKRALTRFIEHRLPTFGDYEDAMMGEDWAMSHSLLSVPLNLGV 266

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYP-SVCMGKPFIPWT 311
           L P       ++ + D    P +    ++ + L WRE+  HL   +             T
Sbjct: 267 LHPLDAVYAAEQAYRD-GTAPLAAVEGFIRQILGWREYMWHLYWHFGERYVDSNELDART 325

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
              +W  D        +       +  A+  L   GW H+  R++             R 
Sbjct: 326 PLPDWWADLDADAVTAE------CLRHALMGLRDRGWTHHIQRLMILGSHALQRGYHPRE 379

Query: 372 GEEYFMSQLLDGD 384
             E++ +  +DG 
Sbjct: 380 LTEWYATAYVDGF 392


>gi|119502976|ref|ZP_01625061.1| hypothetical protein MGP2080_06707 [marine gamma proteobacterium
           HTCC2080]
 gi|119461322|gb|EAW42412.1| hypothetical protein MGP2080_06707 [marine gamma proteobacterium
           HTCC2080]
          Length = 506

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/396 (15%), Positives = 120/396 (30%), Gaps = 48/396 (12%)

Query: 23  NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82
           N A+ AA   +D  ++A  +     +  H     +   I++++    +SL ++G    Y 
Sbjct: 18  NPAIAAADPQADGIILA-EVREEASYVPHN--RHKIALIFSAMRHFAQSLRERGFTVYYT 74

Query: 83  QCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVIC-------KS 135
           + S    S+E   +  L++   K          E R    + +      +        + 
Sbjct: 75  EISAGLTSLEDACADALKRHAAK--SIEVCSPGEHRLLAAMREWSPRLGVAVNLLEDTRF 132

Query: 136 FDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLR------------------SL 177
              S      +     L+M   Y   RK     L   D                     +
Sbjct: 133 LASSADFTAWATGRKQLRMEYFYREMRKRYGLLLDDQDPCGGQWNYDADNRKGWRNQVEI 192

Query: 178 PVPAIRLTGPVTPSNIPR----FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
           P         +T   I      F D P         +  + A      FC+  +  +   
Sbjct: 193 PEREDVSPDAITQQVINEVLEYFPDNPGDLSQFRLAVTHEGAQEQFDWFCRYTLADFGNY 252

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           +D    +      S +S YL+ G+L P     R++ E+        +        L WRE
Sbjct: 253 QDALPEESPWVFHSLISMYLNCGLLEPLALCQRVEAEYRAERCSLAAAEGFIRQILGWRE 312

Query: 290 FYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           + R +     P       F              L   +    T    +  A+ Q   +G+
Sbjct: 313 YVRGIYWLLMPEYAERNTFDARR---------PLPDFFWNAQTDMRCLQRALSQSLDLGY 363

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            H+  R++          +D +    ++++  +D  
Sbjct: 364 AHHIQRLMVIGNFALLAGLDVQSVCAWYLAVYVDAY 399


>gi|83816493|ref|YP_446144.1| deoxyribodipyrimidine photolyase-like protein protein [Salinibacter
           ruber DSM 13855]
 gi|294508067|ref|YP_003572125.1| deoxyribodipyrimidine photolyase-related protein [Salinibacter
           ruber M8]
 gi|83757887|gb|ABC46000.1| Deoxyribodipyrimidine photolyase-related protein [Salinibacter
           ruber DSM 13855]
 gi|294344395|emb|CBH25173.1| Deoxyribodipyrimidine photolyase-related protein [Salinibacter
           ruber M8]
          Length = 514

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 110/343 (32%), Gaps = 37/343 (10%)

Query: 68  VQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVT-KLFYNRQ----YEINEVRRDKL 122
           +++ L++                +E ++  C +  V  ++  +      ++  E   D  
Sbjct: 87  LRQQLAEHQPERVAMTEPGRHALLETIEGVCEEMGVPLRVHADDHFLATHDTFEQWADGR 146

Query: 123 LEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI 182
            E  L++    +  +  VL+                  F     ++        +P    
Sbjct: 147 KELTLEYFYRERRREYDVLV------TDDGDPVGGDWNFDDDNQESFGADGPGMVPEGPA 200

Query: 183 ----RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP- 237
                +T  V      +F D P       +P+    A   L  F + ++  +   +D   
Sbjct: 201 FERDAMTEDVLDLVRTQFADAPGALDAFRWPVTPAQARAALADFVEHRLPNFGTYQDAMW 260

Query: 238 ---AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRH 293
              A    S+LS  L++ +L P       +E + D    P +    ++ + L WREF R 
Sbjct: 261 TGRAFLYHSRLSCALNLKLLDPMTAVRAAEEAYHD-DHAPLNAVEGFVRQILGWREFVRG 319

Query: 294 LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRL 353
           +   +           + ++        L + +  G T    +     Q+    + H+  
Sbjct: 320 VYWLHAP--------EYVDRNALEATEDLPEFYWTGDTDMRCLSECTGQVREHAYAHHIP 371

Query: 354 RMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAA 396
           R++          VD +   E+  S  +D         W+W +
Sbjct: 372 RLMVMGLFGLLYGVDPQQMNEWHESMYIDA--------WEWVS 406


>gi|307944722|ref|ZP_07660060.1| photolyase family protein [Roseibium sp. TrichSKD4]
 gi|307771936|gb|EFO31159.1| photolyase family protein [Roseibium sp. TrichSKD4]
          Length = 514

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 93/280 (33%), Gaps = 32/280 (11%)

Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSL----PVPAIRLTGPVTPSNIP----RFF 197
            +      +     P       +             P PA   +  VT   +     RF 
Sbjct: 159 EVRRKTGLLMDGSQPVGGKWNFDADNRKPVPSNLFQPQPARFESDTVTTDVLDLVKERFS 218

Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGV 253
            +        F +    AL    +F +  +  + + +D           S +S YL+ G+
Sbjct: 219 SHFGDLEPFWFAVTRDQALLAFDRFVETTLPQFGDYQDAMLRGEKFLYHSIISAYLNAGL 278

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWT 311
           L P +   R++E F +    P + A  ++ ++I WRE+ R +     P       F    
Sbjct: 279 LYPLELCRRVEEAF-EAGHVPINAAEGFIRQIIGWREYVRGIYWLKMPEYLQQNHFAAKR 337

Query: 312 E--KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                 W+ D+ +L   +           A+ Q     + H+  R++          VD 
Sbjct: 338 ALPDFYWSADTDMLCMKE-----------AITQTREEAYAHHIQRLMVTGNFALLAGVDP 386

Query: 370 RIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
           R   E++M+   D      L +  G  Q+A      S PY
Sbjct: 387 REVHEWYMAVYADAFEWVELPNTLGMSQFADGGLLGSKPY 426


>gi|254373815|ref|ZP_04989298.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151571536|gb|EDN37190.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 509

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 68/181 (37%), Gaps = 20/181 (11%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
            + AL  L  F  E++  + + +D      A    S +S Y++ G+L P +C    ++ +
Sbjct: 232 REQALEALDLFINERLSSFGDYQDAMLEGQAWMYHSHISMYINSGLLLPMECIKAAEKAY 291

Query: 268 VDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLL 323
                 P +    ++ + L WREF R +            ++  T K+    W+  + + 
Sbjct: 292 YK-GNAPLNAIEGFIRQVLGWREFVRGVYWLKMPDYRDMNYLEATRKLPSFYWDTKTKMN 350

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             ++            +++     + H+  R++          VD +   E+++    D 
Sbjct: 351 CLYQ-----------CVKETKQNAYAHHIQRLMVLGNFALLTGVDPKYVNEWYLLVYADA 399

Query: 384 D 384
            
Sbjct: 400 Y 400


>gi|302383032|ref|YP_003818855.1| deoxyribodipyrimidine photolyase-related protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193660|gb|ADL01232.1| deoxyribodipyrimidine photolyase-related protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 519

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 104/367 (28%), Gaps = 43/367 (11%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
           G   ++   I+A++      L  + IV +Y +  + D++                     
Sbjct: 48  GHHKQKIALIFAAMRAFALRLEARDIVVRYVRIDDPDNTHSIAGELERALSDQPFEAVVM 107

Query: 112 YEINEVRRDKLLEKRLQHRVICK--SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNL 169
            E  E R  + L    +   +      DD  +         +    ++   F    ++  
Sbjct: 108 TECGEWRLAEALSAFARSSGVPCDIRHDDRFICSHDRFRRWSSGKSQLRMEFFYREMRKE 167

Query: 170 V---------------------------QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ 202
                                             L  P   +           F D+   
Sbjct: 168 TGILLDDGQPVGGKWNYDAENRKGLTKGVRPPARLRTPPDAVAVEAIADVERLFPDHFGT 227

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAI----QGTSQLSPYLSIGVLSPRQ 258
                +P     A  +L  F  E +  + + +D  A+         +S  L++G+L    
Sbjct: 228 TDAFGWPTTAAQAEAVLADFLSEVLPRFGDWQDAMALGEPWMWHGLISTSLNLGLLDALD 287

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
              R   EF      P +    ++ + L WREF R +          + F+     + W 
Sbjct: 288 VCRRADAEFRAGRA-PLNAVEGFIRQILGWREFVRGIYWLKVPEYRQRNFLDADRDLPW- 345

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
                   +  G T    +   +       + H+  R++    L   L V     +++++
Sbjct: 346 -------FFWSGETDMACVADVVATTRDNAYAHHIQRLMVTGNLAMLLGVHPDPVDDWYL 398

Query: 378 SQLLDGD 384
           S   D  
Sbjct: 399 SVYADAY 405


>gi|241667255|ref|ZP_04754833.1| deoxyribodipyrimidine photolyase-related protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254875806|ref|ZP_05248516.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841827|gb|EET20241.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 509

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 83/248 (33%), Gaps = 22/248 (8%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQAD--LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
           +L++  +       +     +         +S    A  +T  V       F +      
Sbjct: 165 LLDNDGKPEGGQWNYDSQNRKTPSSCMQIPKSYKSKADDITKRVIKLVEKTFGNNFGDIE 224

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCW 260
              + +  + AL  L  F  E++  + + +D      A    S +S Y++ G+L P +C 
Sbjct: 225 PFNYAVTREQALEALDLFINERLSSFGDYQDAMLEGQAWMYHSHISMYINSGLLLPMECI 284

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---W 316
              ++ +      P +    ++ + L WREF R +            ++  T K+    W
Sbjct: 285 KAAEKAYYK-GNAPLNAIEGFIRQVLGWREFVRGVYWLKMPDYRDMNYLEATRKLPSFYW 343

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
           +             T    +   +++     + H+  R++          +D +   E++
Sbjct: 344 DT-----------ETKMNCLHQCVKETKENAYAHHIQRLMVLGNFALLAGIDPKYVNEWY 392

Query: 377 MSQLLDGD 384
           +    D  
Sbjct: 393 LLVYADAY 400


>gi|15824993|gb|AAL09564.1|AF363633_1 cryptochrome 2 [Coturnix japonica]
          Length = 49

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 12 VWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH 59
           W R  LR+ DN AL AA   + A +  ++I  P       +   +  
Sbjct: 3  HWFRRGLRLHDNPALQAALRGA-ASIRCIYILDPWFAASSAVGINRWR 49


>gi|330879648|gb|EGH13797.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 328

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 91/267 (34%), Gaps = 33/267 (12%)

Query: 171 QADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           +     +   A  +T  V      RF  +     D  +P+   +A  +   F    +  +
Sbjct: 6   RRSPYPMRFSADGITRDVLTLVAERFASHYGSLDDFDYPVTHVDAQALWDYFLDFGLAGF 65

Query: 231 VEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI 286
              +D  A        +++S  L+IG+L  RQ  + ++  +    +   + A  ++ +LI
Sbjct: 66  GYYQDAMATDEPFLFHARISAALNIGLLDLRQICSDVESAYWSGRV-ALNAAEGFIRQLI 124

Query: 287 -WREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
            WRE+ R +     P    G  F              L + +  G T    +  A+ Q  
Sbjct: 125 GWREYVRGVYWLKMPEYADGNLFG---------NSRPLPEFYWTGETMMNCMSQAIGQSL 175

Query: 345 TIGWMHNRLRMIT-ASFLVKDLLVDWRIGEEYFMSQLLDGDL---ASNNGGWQWAASTGN 400
              + H+  R++   +F +   +V  +I E Y    +   D     +  G    A     
Sbjct: 176 KHAYAHHIQRLMVTGNFALLAGIVPNQICEWYLAIYMDAFDWVELPNTLGMVMHADGGYL 235

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRH 427
            S PY                G +I+ 
Sbjct: 236 GSKPYC-------------ASGQYIKR 249


>gi|88799010|ref|ZP_01114591.1| hypothetical protein MED297_02387 [Reinekea sp. MED297]
 gi|88778237|gb|EAR09431.1| hypothetical protein MED297_02387 [Reinekea sp. MED297]
          Length = 523

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 66/460 (14%), Positives = 134/460 (29%), Gaps = 82/460 (17%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSL 72
           W R                 SD +V+ V I   ++        ++    + ++     +L
Sbjct: 25  WFRR----------------SDPEVLYVIIELSQELTVVQHHVQKVEAFFLAMQLFADAL 68

Query: 73  SQKGIVFQYHQCSNF---DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH 129
            + G   ++    +    D   + L       +V +  Y +    +E R ++ L    + 
Sbjct: 69  GKAGHQVRHLTLDDTQGDDSLDDCLSKLIRDHQVQRFEYQQ---PDEYRLEQQLRLFCEQ 125

Query: 130 RVICKSFDDS-----------VLLPPGS----------------ILNHALQMYKVYTPFR 162
           + I     DS            L   G+                +L            + 
Sbjct: 126 QSIAHECVDSEHFFLNREALATLFNAGTSHRMEAFYRNMRRQFNVLMEGENPVGGQWNYD 185

Query: 163 KALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
               + L  ADL  LP P   A  ++                     ++P+    A  +L
Sbjct: 186 AENRKKLKAADLVDLPEPLVFANDVSEVRKRLARHHVRTIGESMPHCLWPVTRTQAKSLL 245

Query: 220 RKFCKEKVYYYVEQRDIPAIQ---------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
             FC   + Y+   +D                S+LS  L+  +L P Q        +   
Sbjct: 246 SFFCAHCLPYFGRFQDAMTADAEESKRWSLYHSRLSFALNTKMLHPAQVIREAVNCYEQS 305

Query: 271 LIK-PKSGAFSWLNE-LIWREFYR-HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWK 327
             +   +    ++ + L WREF R    A  P            +         L Q + 
Sbjct: 306 DGQISLAQIEGFVRQILGWREFVRGMYWANMPQYGQLNALQAERD---------LPQQYW 356

Query: 328 QGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLAS 387
            G T    +  A+ Q  +  + H+  R++          ++    +++++   +D     
Sbjct: 357 TGQTRMRCMSLAIGQSLSFAYAHHIQRLMVTGNFALLAGINPDQVDQWYLGIYVDA---- 412

Query: 388 NNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
                +W        +  F      +  K +   G +I+ 
Sbjct: 413 ----IEWVEMPNTRGMSQF-ADGGLVGSKAYAASGQYIQR 447


>gi|117922136|ref|YP_871328.1| deoxyribodipyrimidine photolyase-like protein [Shewanella sp.
           ANA-3]
 gi|117614468|gb|ABK49922.1| deoxyribodipyrimidine photolyase-related protein [Shewanella sp.
           ANA-3]
          Length = 525

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 112/364 (30%), Gaps = 53/364 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW---LDSYCLQQRVTKLFYNRQYEINEV 117
            ++++ Q    L   G   +Y    +  D  +    L  Y  +    K  Y R    +E 
Sbjct: 63  FFSAMAQFASELGAAGHRVRYLTLDDTQDFADLNALLQHYVAETGAIKFEYQR---PDEY 119

Query: 118 RRDKLLEKR-LQHRVICKSFDDSVLLPPGSILNH-------------------------A 151
           R    L +  L + V+     +  L P   I                             
Sbjct: 120 RLLAQLSQLKLANAVVNCVDTEHFLFPFDEIDREFPQGQHRLMEHFYRRMRKRFNILMTD 179

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMF 208
            +       F  +  Q L   D++SLP P +    +   +                  ++
Sbjct: 180 GKPVGGQWNFDASNRQKLKSQDIKSLPTPLMFGHNVQDILERLTRHGINTMGKVDTHLLW 239

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPRQCWN 261
           P     +L +L+ FC+  +  +   +D    Q         S+LS  L+  ++SP +  N
Sbjct: 240 PTNRAQSLELLQYFCEYCLPAFGRFQDAMTQQHPAQWSLYHSRLSFSLNAKLISPLEVIN 299

Query: 262 RLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNKD 319
            + E +        +    ++ + L WRE+ R +  A  P            +       
Sbjct: 300 AVIEHYHANPFIEIAQVEGFVRQILGWREYVRGIYWANMPQYASINALEATRK------- 352

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
             L   +  G T    +  A+       + H+  R++          +     +++++  
Sbjct: 353 --LPDYFWHGKTRMNCLHRALSPSLDYAYAHHIQRLMVIGNFCLLTEIAPDEVDKWYLGV 410

Query: 380 LLDG 383
            +D 
Sbjct: 411 YVDA 414


>gi|315498319|ref|YP_004087123.1| deoxyribodipyrimidine photolyase-related protein [Asticcacaulis
           excentricus CB 48]
 gi|315416331|gb|ADU12972.1| deoxyribodipyrimidine photolyase-related protein [Asticcacaulis
           excentricus CB 48]
          Length = 506

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 112/360 (31%), Gaps = 44/360 (12%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F+++++    ++L Q G   +Y +  + +++          +   KL      E  E
Sbjct: 47  KIAFLFSAMRHYAEALQQAGYRVRYVRFDDPENTHSLKREIDRARTELKLSAVHVTEPGE 106

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQA---- 172
            R   L E       +    D+  L  P      A    ++   +    ++         
Sbjct: 107 WR---LKEVFAAMDDVTLLEDNRFLCSPQWFSRWAEGRKQLRMEYFYREMRRAHDILMDD 163

Query: 173 -----------------------DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
                                    R L      +T  V       F D P Q     F 
Sbjct: 164 GKPCGGEWNYDAENRSPPRDGLVFPRRLSFRKDSITRDVLYLVAKVFPDNPGQLEPFHFA 223

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRD-IPAIQ---GTSQLSPYLSIGVLSPRQCWNRLKE 265
           +    AL  L  F    +  +   +D +   +     S LS Y++ G+L P +     + 
Sbjct: 224 VTRSQALKELDHFVAHILPQFGPWQDAMLGREPYMYHSLLSSYINAGLLYPLEVCLAAER 283

Query: 266 EFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
            + +    P +    ++ + L WRE+ R L   +    +    +   E + W        
Sbjct: 284 AYRE-DGAPLNAVEGFIRQVLGWREYVRGLYWHFMPDYVAMNALDAHEDLPW-------- 334

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            +  G T    +  A+       + H+  R++          VD +   E++++   D  
Sbjct: 335 FYWSGDTQMNCVRTAVAHTLEHAYSHHIQRLMITGNFALLAGVDPKQVHEWYLAVYADAY 394


>gi|108799890|ref|YP_640087.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           MCS]
 gi|119869000|ref|YP_938952.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           KMS]
 gi|108770309|gb|ABG09031.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           MCS]
 gi|119695089|gb|ABL92162.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium sp.
           KMS]
          Length = 525

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 111/373 (29%), Gaps = 40/373 (10%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCL 99
           + I      R+     ++ H + ++L    + L  +  +    +   + D++E      L
Sbjct: 61  LLIEADHALRKRRYHRQKLHIVLSALRHADRDLGDRATLL---RSETYTDALERYGRPVL 117

Query: 100 QQRVTKLFYNRQYEINEVRRDKLLEK-------RLQHRVICKSFDDSVLLPPGSILNHAL 152
               T     R   ++ +++  L+          L  +   +   +              
Sbjct: 118 VHEPTSFAAERF--VHRLKQRGLVADILPTPTFALPRKDFEQWAGNRTRFRMEDFYRDQR 175

Query: 153 QMYKVYT----PFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFF----DYPFQAI 204
           + + V      P       +             + +  P  P           D     +
Sbjct: 176 RRFDVLMSGADPVGNRWNYDEENRHSPPKKRRTLDVPAPYKPREDDIDEEVRRDLDRMDL 235

Query: 205 DP-------MFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGV 253
           D        +F +    A   L +F + ++  + +  D           S LS  L++GV
Sbjct: 236 DTVGADGPRLFAVTPAEAKRALTRFIEHRLPTFGDYEDAMMGEDWAMSHSLLSVPLNLGV 295

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYP-SVCMGKPFIPWT 311
           L P       ++ + D    P +    ++ + L WRE+  HL   +             T
Sbjct: 296 LHPLDAVYAAEQAYRD-GTAPLAAVEGFIRQILGWREYMWHLYWHFGERYVDSNELDART 354

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
              +W  D        +       +  A+  L   GW H+  R++             R 
Sbjct: 355 PLPDWWADLDADAVTAE------CLRHALMGLRDRGWTHHIQRLMILGSHALQRGYHPRE 408

Query: 372 GEEYFMSQLLDGD 384
             E++ +  +DG 
Sbjct: 409 LTEWYATAYVDGF 421


>gi|126665805|ref|ZP_01736786.1| hypothetical protein MELB17_04532 [Marinobacter sp. ELB17]
 gi|126629739|gb|EBA00356.1| hypothetical protein MELB17_04532 [Marinobacter sp. ELB17]
          Length = 510

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 75/249 (30%), Gaps = 18/249 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLP--VPAIRLTGPVTPSNIPRFFDYPFQ 202
           G ++    +       +     +          P  +    +T  V         D+   
Sbjct: 163 GLLMTPEQKPEGGEWNYDAENRRKWTGKPPAPAPFRIEPDAVTQEVINMVEEHLGDHFGI 222

Query: 203 AIDPMFPIGEQNALHILRKFCKE---KVYYYVEQR-DIPAIQGTSQLSPYLSIGVLSPRQ 258
           + D  F +   +A   L  F          Y +   D       S LSPY++ G+L P  
Sbjct: 223 SEDFHFAVTAADAEKALEHFIDYALPCFGDYQDAISDHEDWLFHSILSPYINCGLLDPLT 282

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEKIEW 316
              +  + +      P +    ++ ++I WREF R +     P                 
Sbjct: 283 VCEQAAQAWYAGRA-PINAVEGFIRQIIGWREFVRGIYWLHMPEYARNNQLG-------- 333

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
             D  L   +  G T    +  A+      G+ H+  R++          +      +++
Sbjct: 334 -NDRALPGFYWTGDTRMRCMHKAIDATRRNGYAHHIQRLMVTGNFALLAGITPDDICDWY 392

Query: 377 MSQLLDGDL 385
           ++  +D   
Sbjct: 393 LAVYVDAYD 401


>gi|50120519|ref|YP_049686.1| hypothetical protein ECA1585 [Pectobacterium atrosepticum SCRI1043]
 gi|49611045|emb|CAG74490.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 512

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 77/209 (36%), Gaps = 20/209 (9%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRL 263
           +P+   +A  +   F    +  + + +D  A        +++S  L+IG+L  RQ    +
Sbjct: 227 YPVTHADAQALWDYFLDYGLAGFGDYQDAMACDEPFLFHARISAALNIGLLDVRQLCRDV 286

Query: 264 KEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSH 321
           +  ++   IK  + A  ++ +LI WRE+ R +     P    G  F              
Sbjct: 287 ESAYLSGRIK-LNAAEGFIRQLIGWREYVRGVYWLKMPDYAGGNVFG---------NTRS 336

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           L + +  G T    +  A+ Q     + H+  R++          +      E++++  +
Sbjct: 337 LPEFYWTGKTQMNCMQQAIGQSLEHAYAHHIQRLMVTGNFALLAGIAPAEICEWYLAIYM 396

Query: 382 DGD----LASNNGGWQWAASTGNDSVPYF 406
           D      L +  G    A      S PY 
Sbjct: 397 DAFDWVELPNTLGMVMHADGGYLGSKPYC 425


>gi|332663191|ref|YP_004445979.1| deoxyribodipyrimidine photolyase-like protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332332005|gb|AEE49106.1| deoxyribodipyrimidine photolyase-related protein [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 513

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/410 (14%), Positives = 130/410 (31%), Gaps = 52/410 (12%)

Query: 42  IATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ 101
           I    Q+ QH I      F+  ++      L   G   QY +  +  ++++   + C Q 
Sbjct: 35  ILPETQYVQHHIQKICGFFL--AMRAFAAQLEAMGHHVQYFKLDD-TNNLQGFAANCTQL 91

Query: 102 RVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICKSFDDSVLL----PPGSILNHALQM-Y 155
                  + +Y+  +E R D+ L    Q     K FD             +         
Sbjct: 92  IERHHIQHFEYQLPDEWRVDQQLLAFCQSLGSSKVFDSEHFFSTRTELAELFTGKKTYLM 151

Query: 156 KVYTPFRKALIQNLVQAD-------------------LRSLPVPAIRLTGPVTPSNIPRF 196
           + +    ++  Q L++ D                     +L VP            +   
Sbjct: 152 ESFYRKMRSKHQILMEPDGKTPLTGRWNYDAENRKKMPATLQVPPALQQIKDASHIVTLL 211

Query: 197 FDYPFQAIDPM------FPIGEQNALHILRKFCKEK---VYYYVEQR-DIPAIQGTSQLS 246
                + I  +      +PI    +L +L  F   +      Y +   D   +   S+LS
Sbjct: 212 AKMGVKTIGTIDPQRFNWPITRVESLALLEHFIALRLPAFGDYQDAMTDRDWLLFHSRLS 271

Query: 247 PYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELI-WREFYRHLMAFYPSVCMG 304
             +++ ++SP++      + +       P S    ++ +++ WRE+ R +          
Sbjct: 272 FSMNLKLISPQEVITACIDYWQAHPETVPYSALEGFVRQIVGWREYMRGIYWAEMPRYQK 331

Query: 305 KPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKD 364
             +   T  +           +    T    +  A+ Q     + H+  R++        
Sbjct: 332 LNYFEHTAALP--------SWFWHAETKMNCLSQAIGQSLEYAYAHHIQRLMLTGNFALL 383

Query: 365 LLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFN 410
           L V     + +++   +D     ++ +  G  Q+A      + PY    N
Sbjct: 384 LGVHPDEVDAWYLGIYIDALEWVEITNTRGMSQFADGGIVGTKPYVSSAN 433


>gi|120437053|ref|YP_862739.1| deoxyribodipyrimidine photolyase family protein [Gramella forsetii
           KT0803]
 gi|117579203|emb|CAL67672.1| deoxyribodipyrimidine photolyase family protein [Gramella forsetii
           KT0803]
          Length = 515

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 123/366 (33%), Gaps = 38/366 (10%)

Query: 30  CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89
             N D +VI + I  PE  +                  + K +S+K I    +Q  +   
Sbjct: 65  LRNKDFQVIYLSINDPENLQNLD-------------KNLNKIISEKNIEKFEYQFPDEYR 111

Query: 90  SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICK-SFDDSVLLPPGSIL 148
             E L  +     +    +    E    +RD  LEK  + +      +    +    +IL
Sbjct: 112 LDEQLKKFSKHLHIKSEAF--DSEHFFTKRDD-LEKFYEGKKQLTMEYFYRYMREKNNIL 168

Query: 149 -----NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQA 203
                +     +      RK    +      R       ++   +  + I        + 
Sbjct: 169 MATEKDPEGGKWNFDKSNRKKWTGDPEIPHERGFRKDVSKILKEIEQAEIKTMGSLDEKK 228

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQC 259
            +  +P   +++L +L  FCK  + ++ + +D    +      S+LS  ++  +LSPR+ 
Sbjct: 229 FN--WPTSREDSLSVLNYFCKNLLIHFGDFQDALHTEQEYLFHSRLSFSMNSKMLSPREV 286

Query: 260 WNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
            + + + + +       S    ++ + L WRE+ R +          K    +    + +
Sbjct: 287 VDSVIDFYYEHRDTIDISQVEGFVRQILGWREYMRGIYW--------KEMPGYRRANKLD 338

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
             + L + +    T    +  +++      + H+  R++                + +++
Sbjct: 339 NQNKLPEFYWNAETKMNCLHHSIKNSLENAYAHHIQRLMITGNYALLTQTHPDEVDHWYL 398

Query: 378 SQLLDG 383
              +D 
Sbjct: 399 GIYIDA 404


>gi|86134107|ref|ZP_01052689.1| deoxyribodipyrimidine photolyase-related protein [Polaribacter sp.
           MED152]
 gi|85820970|gb|EAQ42117.1| deoxyribodipyrimidine photolyase-related protein [Polaribacter sp.
           MED152]
          Length = 510

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 77/208 (37%), Gaps = 18/208 (8%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRL 263
           +PI  + AL  L  FC   + ++ + +D           S++S  ++  ++SP++     
Sbjct: 226 YPISRKQALTQLSYFCGHLLVHFGDYQDAMHTDQVFLFHSKISFAMNTKMISPKEIVETT 285

Query: 264 KEEFVDLLIK-PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
              +     +   S    ++ ++I WRE+ R +          + F+        N  + 
Sbjct: 286 LATYRKRKDEIDISQVEGFIRQIIGWREYMRGMYWMLMPDYKKENFL--------NNKNK 337

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           L   +  G T    +  A+      G+ H+  R++          +D    + +++   +
Sbjct: 338 LPDFFWTGKTKMNCLKNAIHNSLDNGYAHHIQRLMITGNFALLTQIDPDEIDAWYLGIYV 397

Query: 382 DG----DLASNNGGWQWAASTGNDSVPY 405
           D      L +  G  Q+A      + PY
Sbjct: 398 DAIEWVQLPNTRGMSQFADGGKIATKPY 425


>gi|169656793|ref|YP_001715625.1| hypothetical protein FTA_2149 [Francisella tularensis subsp.
          holarctica FTNF002-00]
 gi|164551861|gb|ABY60985.1| hypothetical protein FTA_2149 [Francisella tularensis subsp.
          holarctica FTNF002-00]
          Length = 49

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 6  AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIA 43
          +  + + W R DLR+ DN ALY      +   I +FI 
Sbjct: 2  SKKIAIHWFRQDLRLADNPALYQVSQADET--ITIFIL 37


>gi|332185621|ref|ZP_08387369.1| FAD binding domain of DNA photolyase family protein [Sphingomonas
           sp. S17]
 gi|332014599|gb|EGI56656.1| FAD binding domain of DNA photolyase family protein [Sphingomonas
           sp. S17]
          Length = 512

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 12/206 (5%)

Query: 183 RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----A 238
           R+T  V      RF ++P       +      A      F    +  + + +D       
Sbjct: 205 RITREVLELVAARFDNHPGSLEGFAYATTTTEAQQQAEAFMAHALPKFGDYQDAMLTGQH 264

Query: 239 IQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY 298
               S LSPY++ G+L P +     + E+ D      S        + WRE+ R L    
Sbjct: 265 QLWHSVLSPYINSGLLDPLELCRMAEAEYEDGHASLNSVEGYIRQIIGWREYVRGLYWHV 324

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
               +   F+     +           +  G T    +  A+ Q       H+  R++  
Sbjct: 325 GPDYVEHNFLRANRPLP--------GFYWTGETDMHCMAEALGQTLDTAHAHHIQRLMVT 376

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGD 384
                 +  D      +++   +D  
Sbjct: 377 GNFAILIGADPAEVHRWYLEIYVDAY 402


>gi|224014102|ref|XP_002296714.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968569|gb|EED86915.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 458

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 82/255 (32%), Gaps = 44/255 (17%)

Query: 159 TPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGE------ 212
            PF    + +L Q+D          ++   T +        PF      +P  +      
Sbjct: 61  RPFTSKELSDLYQSDDYFALDERATISEQRTKAKGSDAIQTPFHNFALHWPGADPTVPPC 120

Query: 213 -------QNALHILRKFCKEKV-YYYVEQRDIP-AIQGTSQLSPYLSIGVLSPRQCWNRL 263
                   + ++  + + +      Y + R+    + G+S++S YL++G++S  +  +  
Sbjct: 121 TQIIGTTTHGVNRWKTWLQNGGLNKYGKVRNDAKNVNGSSRMSAYLNLGIVSIFRVVSDA 180

Query: 264 KEEFVDLL----------IKPKSGAFSWLNELIWREFYRHLMAF-------------YPS 300
           K                  K KSG   +  E+I    + +  AF             +  
Sbjct: 181 KRIQKQQNEKKGTMSKWDNKNKSGGDKFEEEIIKFREFSYAHAFSRLDYDDVTTLPRWSV 240

Query: 301 VCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF 360
            C+   F            S+ L     G T     +A  + L   G +HN +RM     
Sbjct: 241 QCLNDAFGASYGG------SYNLSELASGKTNDVKWNAMQQYLVRTGELHNNVRMTWGKT 294

Query: 361 LVKDLLVDWRIGEEY 375
           +V+         + Y
Sbjct: 295 VVEWRAERSANNDAY 309


>gi|120600435|ref|YP_965009.1| deoxyribodipyrimidine photolyase-like protein [Shewanella sp.
           W3-18-1]
 gi|120560528|gb|ABM26455.1| deoxyribodipyrimidine photolyase-related protein [Shewanella sp.
           W3-18-1]
          Length = 537

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 86/249 (34%), Gaps = 21/249 (8%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQA 203
           IL    +       F  +  Q L   DL+SLP P +    +   +               
Sbjct: 187 ILIEDGKPVGGQWNFDASNRQKLKSQDLKSLPTPLMFGHNVEDILERLKRHGINTMGKAD 246

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSP 256
           +  ++PI    +L +L+ FC+  +  +   +D    Q         S+LS  L+  +++P
Sbjct: 247 MHLLWPINRAQSLELLKYFCEYCLPAFGRFQDAMTQQHPAQWSLYHSRLSFSLNAKLINP 306

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKI 314
            +  N   E +        +    ++ + L WRE+ R +  A  P            +  
Sbjct: 307 LEVINAAIEYYQANPHIEIAQVEGFVRQILGWREYVRGIYWANMPQYASINALEATRK-- 364

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                  L   +  G T    +  A+ Q     + H+  R++          ++    +E
Sbjct: 365 -------LPDYFWNGKTQMNCLRHALSQSLDFAYAHHIQRLMVIGNFCLLTEIEPNQVDE 417

Query: 375 YFMSQLLDG 383
           +++   +D 
Sbjct: 418 WYLGVYVDA 426


>gi|83649417|ref|YP_437852.1| hypothetical protein HCH_06803 [Hahella chejuensis KCTC 2396]
 gi|83637460|gb|ABC33427.1| uncharacterized protein related to deoxyribodipyrimidine photolyase
           [Hahella chejuensis KCTC 2396]
          Length = 518

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/403 (14%), Positives = 123/403 (30%), Gaps = 56/403 (13%)

Query: 26  LYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKG---IVF 79
           L AA      +D  V+ V    P++        ++    +A++     ++ + G   +  
Sbjct: 16  LNAAHSWFRETDPGVLYVIAELPQEVDYVVHHVQKVCAFFAAMKSFADAIRKAGHEVLHL 75

Query: 80  QYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDS 139
                  F D    L+  C + +V +  Y R  E   +++ + L+  L  R+     D  
Sbjct: 76  TLDDTQEFADLPTLLNHLCGRHQVRRFEYQRPDEYRLLQQMEQLK--LGERIDIAQVDTE 133

Query: 140 VLLPPG--------------------------SILNHALQMYKVYTPFRKALIQNLVQAD 173
             L P                            IL            F       +    
Sbjct: 134 HFLLPFAEISDHFVRGEHLTMENFYRRMRKRFDILMQDGAPLGGKWNFDSENRNKIKAEQ 193

Query: 174 LRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYY 230
           L  +P P      ++  +          +       ++P+  + AL +L+ FC+  +  +
Sbjct: 194 LAEIPDPLCFDNDVSVILERLRRYAVKTFGVAHERLLWPVTRRQALQLLQHFCERCLPQF 253

Query: 231 VEQRD--IPAIQ-----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWL 282
              +D    A++       S+LS  L+  +L P Q      E +              ++
Sbjct: 254 GRFQDAMTDAVEAQWSLYHSRLSFALNTKMLYPMQVIRAALERYEQAEGDISLPQIEGFV 313

Query: 283 NE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAM 340
            + L WRE+ R    A  P                      L   +  G T    +   +
Sbjct: 314 RQILGWREYVRGVYWANMPEYMQSNALDAGRR---------LPHYFWDGDTHMRCVSKVV 364

Query: 341 RQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            Q     + H+  R++          +D    +++++   +D 
Sbjct: 365 GQSLQYAYAHHIQRLMVTGNFCLLTGIDPDQVDQWYLGVYVDA 407


>gi|325920668|ref|ZP_08182578.1| deoxyribodipyrimidine photolyase-related protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325548858|gb|EGD19802.1| deoxyribodipyrimidine photolyase-related protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 521

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 112/378 (29%), Gaps = 56/378 (14%)

Query: 72  LSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQ 128
           L Q G   +Y    N          LD+     R + L Y      +E R D+ L     
Sbjct: 73  LRQVGHRVRYVAIDNSSNRHSIPANLDALMAHYRASHLEYQ---APDEWRLDEALRDWCA 129

Query: 129 HRVICKSFDD--SVLLPPGSI--LNHALQMYKVYTPFRKALIQNLVQADLRSLP------ 178
            +       D    L     +         +++   +RK   ++ +  D    P      
Sbjct: 130 RQSFATRMVDSEHFLTERDEVDACFRPGSQWRMEVFYRKMRRRHRILLDACGEPEGGRWN 189

Query: 179 ----VPAIRLTGPVTPSNIPRFFDY---------------PFQAIDPM-FPIGEQNALHI 218
                 A     P  P +     D+                    D + +P+    AL  
Sbjct: 190 FDHDNRAPWPGDPPAPQDWRVAHDHRALWSCIEAAGVRSFGAPNADALPWPLDHDEALQH 249

Query: 219 LRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKP 274
           +  F    + ++    D  + +      S LS  L++ +L PR+   R +  + D    P
Sbjct: 250 MDAFITHGLPHFGRYEDAMSTRSPRLFHSLLSFALNVKLLHPREVIARAEAAWHD-GHAP 308

Query: 275 KSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTG 332
            +    ++ + L WRE+ R +     P                W  D         G  G
Sbjct: 309 LASVEGFIRQILGWREYVRGVYWSQMPGYAQSNQLAQHAPLPHWFWD---------GQIG 359

Query: 333 FPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASN 388
              +  A+         H+  R++          ++ +    +++   +D      L + 
Sbjct: 360 MRCLADAIGNSLANAHAHHIQRLMVIGNFALLAGLEPQALHRWYLGVYIDAFEWVELPNT 419

Query: 389 NGGWQWAASTGNDSVPYF 406
            G  Q+A      S PY 
Sbjct: 420 IGMSQFADGGLLGSKPYI 437


>gi|145589789|ref|YP_001156386.1| deoxyribodipyrimidine photolyase-related protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048195|gb|ABP34822.1| deoxyribodipyrimidine photolyase-related protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 511

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/418 (13%), Positives = 123/418 (29%), Gaps = 77/418 (18%)

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
            +    ++++    +SL        Y + +     ++ L     Q  + +L      E  
Sbjct: 49  AKIALFFSAMRHFARSLRALKYPITYIENTPL-SIVDALKEKLQQDNIGRLIC---IEPG 104

Query: 116 EVRRDKLLEKRLQHRVICKSF--DDSVLLPPGSILNHALQMYKVYTPFRKALI------- 166
           E R  + +EK      I      DD         ++      ++   +   L+       
Sbjct: 105 EWRLKQQIEKLASELSISLEMCEDDHFFCTHQEFIDWTAGKKELRLEYFYRLMRKRHNIL 164

Query: 167 -----------QNLVQADLRSLP------------VPAIRLTGPVTPSNIPRFFDYPFQA 203
                       N  Q + +  P                 +T  V       +  +P   
Sbjct: 165 VDAEGNPEGGQWNFDQDNRKPYPKKGPGMVDEPVLFEPDEITQEVIAFVKRTYPKHPGSL 224

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPY---------LSIGVL 254
               +P+  + AL  L  F + ++  +   +D          +PY         L++ +L
Sbjct: 225 EAFRWPVNREQALEALNYFVEYRLRNFGVYQDAMWTD-----TPYGWHSILSSSLNLKLL 279

Query: 255 SPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMA-FYPSVCMGKPFIPWTEK 313
           +PR+    +   +    +   +        L WREF R +     P +     +      
Sbjct: 280 NPREVIAAVLTAWKKYALDLSTVEGFIRQILGWREFVRGMYYLDMPGMAQDNYYGHERAL 339

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
            +W  D         G T    +  A+ Q    G+ H+  R++          +      
Sbjct: 340 PKWYWD---------GKTKMACMKDAIGQTLEYGYAHHIQRLMVTGNFALLAEILPSAVC 390

Query: 374 EYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           +++++  +D     +L +  G   +A      S PY                G +I+ 
Sbjct: 391 DWYLAIYVDAIEWVELPNTAGMALFANGGRFTSKPYI-------------ASGAYIKR 435


>gi|90578156|ref|ZP_01233967.1| hypothetical protein VAS14_13934 [Vibrio angustum S14]
 gi|90441242|gb|EAS66422.1| hypothetical protein VAS14_13934 [Vibrio angustum S14]
          Length = 518

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 108/365 (29%), Gaps = 54/365 (14%)

Query: 61  IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            +A++     +L Q G   +         + D  + + S C Q       Y +    +E 
Sbjct: 55  FFAAMENFAIALQQAGHEVLHLSLDDTHTYHDLPDLIVSLCQQYHCQAFEYQQ---PDEY 111

Query: 118 RRDKLLEKRLQHRVICKSFDDSVLL--------------------------PPGSILNHA 151
           R  + L       V  ++ D    L                              +L   
Sbjct: 112 RLSQQLAALKIPDVTVQATDSDHFLLTLAELEQYITPNKHHRMEHFYRAMRKRFDVLMVE 171

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
            +       F  A    L   D+ ++P P   +  ++                     ++
Sbjct: 172 GKPQGGKWNFDGANRNKLKAGDIEAIPQPLMFSNDVSAISKRLEKHNINTIGQSCEQLLW 231

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-------TSQLSPYLSIGVLSPRQCWN 261
           P   + +  +L  FC++ +  +   +D    +         S+LS  L+  +L P Q   
Sbjct: 232 PTNRKQSQALLSYFCRDLLPLFGRFQDAMTTKSESAWSLYHSRLSFALNTKMLHPMQVIQ 291

Query: 262 RLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNK 318
              + +     K   +    ++ + L WREF R +     P                   
Sbjct: 292 AAIDAYSQPDSKIDIAQVEGFVRQILGWREFIRAIYWVNMPHYGKENTL---------EA 342

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           +  L   +  G T    +  A++Q     + H+  R++          +     E++++ 
Sbjct: 343 NGSLPDFFWDGKTNMQCMHHAIKQSLDYSYAHHIQRLMVTGNFCLLTGITPSEVEKWYLG 402

Query: 379 QLLDG 383
             +D 
Sbjct: 403 IYIDA 407


>gi|124267244|ref|YP_001021248.1| putative alpha-deoxyribodipyrimidine photolyase-like protein
           [Methylibium petroleiphilum PM1]
 gi|124260019|gb|ABM95013.1| putative alpha-deoxyribodipyrimidine photolyase-related protein
           [Methylibium petroleiphilum PM1]
          Length = 510

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 105/299 (35%), Gaps = 40/299 (13%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI----PRFFDYPFQ 202
           +L H  +       F     +    A   ++P  A+     +T   I     RF  +P +
Sbjct: 164 VLMHGDEPEGGQWNFDADNREAFGAAGPGAVPPRAVFEPDALTREVIALVEKRFGTHPGR 223

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYL---------SIGV 253
                +P+    AL  L++F  E++  +   +D           P+L         ++ +
Sbjct: 224 LDGFAWPVTRAQALVALQRFITERLPLFGRYQDAMWPG-----EPWLYHAHLAAALNLKL 278

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY-PSVCMGKPFIPWT 311
           L+PR+  +     +      P +G   ++ + L WRE+ R +     P            
Sbjct: 279 LNPREVVDAAVAAYRG-GAAPLAGVEGFVRQILGWREYVRGIYWTRMPGYAELNALDARE 337

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
           +   W            G T    +  A+ Q    G+ H+  R++        L V  + 
Sbjct: 338 DLPAWYW---------TGDTEMACLRDAITQTLQHGYAHHIQRLMVTGLYALMLGVQPQQ 388

Query: 372 GEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRFDP 420
              ++++  +D     +L +  G  Q+A      S P      Y +  +P  QG R+DP
Sbjct: 389 VHAWYLAVYVDAVEWVELPNTLGMSQYADGGLMGSKPYVATGKYIQRMSPHCQGCRYDP 447


>gi|295135591|ref|YP_003586267.1| deoxyribodipyrimidine photolyase family protein [Zunongwangia
           profunda SM-A87]
 gi|294983606|gb|ADF54071.1| deoxyribodipyrimidine photolyase family protein [Zunongwangia
           profunda SM-A87]
          Length = 515

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 83/241 (34%), Gaps = 16/241 (6%)

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
           +     +      RK           R        L   +  + I    +   ++ +  +
Sbjct: 174 DPEGGKWNFDKSNRKKWTGTPEIPHERGFRKDVSHLVKEIEQAGIKTMGNINEKSFN--W 231

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLK 264
           P   +++L +L  FCK  + ++ + +D           S+LS  ++  +LSP++  +   
Sbjct: 232 PSSREDSLSVLNYFCKNLLVHFGDFQDALHTDHAYLFHSRLSFCMNTKMLSPKEVIDSAI 291

Query: 265 EEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
             + +   K   S    ++ + L WRE+ R +        +  P      K+  +  + L
Sbjct: 292 SYYYEHKDKIDISQVEGFVRQILGWREYMRGIY------WLKMPGYRRRNKL--DNQNEL 343

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
              +  G T    +  A+ Q     + H+  R++                + +++   +D
Sbjct: 344 PPFYWDGKTKMNCLHHAITQSLDNAYAHHIQRLMITGNYALLTQCHPDEVDAWYLGIYID 403

Query: 383 G 383
            
Sbjct: 404 A 404


>gi|254420709|ref|ZP_05034433.1| Deoxyribodipyrimidine photolyase-related protein [Brevundimonas sp.
           BAL3]
 gi|196186886|gb|EDX81862.1| Deoxyribodipyrimidine photolyase-related protein [Brevundimonas sp.
           BAL3]
          Length = 512

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 85/248 (34%), Gaps = 15/248 (6%)

Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQ 202
             G +++ A      +    +   +        S        T     +++ R F   F 
Sbjct: 161 ETGLLMDGAQPEGGRWNYDAENRKKLPRGMTPPSRMRIPPNPTAQDAIADVERLFGDHFG 220

Query: 203 AIDPM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPR 257
           +++   +P     A  +L  F +  +  + + +D  A          +S  L++G+L P 
Sbjct: 221 SLEAFGWPTTAAEAEAVLAHFLEAILPSFGDWQDAMAEDQPWMWHGLISTSLNLGLLDPL 280

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316
               R +  +      P +    ++ + L WREF R +          + F+     + W
Sbjct: 281 DVCRRAEAVYRAGRA-PLNAVEGFIRQILGWREFVRGIYWLKAPEYRLRNFLDADRTLPW 339

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
                    +  G T    +  A++  +   + H+  R++    L   L V     ++++
Sbjct: 340 --------FYWSGETDMACVADAVKTTHDNAYAHHIQRLMVTGNLALLLGVHPDAVDDWY 391

Query: 377 MSQLLDGD 384
           M+   D  
Sbjct: 392 MAVYADAY 399


>gi|88704317|ref|ZP_01102031.1| Deoxyribodipyrimidine photolyase-related protein [Congregibacter
           litoralis KT71]
 gi|88701368|gb|EAQ98473.1| Deoxyribodipyrimidine photolyase-related protein [Congregibacter
           litoralis KT71]
          Length = 510

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 61/397 (15%), Positives = 125/397 (31%), Gaps = 49/397 (12%)

Query: 23  NKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYH 82
           N  L  A  + D  ++A  +A    +  H     +   I++++    + L +KG    Y 
Sbjct: 18  NPVLVNADPDRDCVLLA-EVAEEASYVTHN--RHKIVLIFSAMRHFAELLREKGFTVIYR 74

Query: 83  QCSN-FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141
                     E +     + +   L      E   +   +  E  L   V+ +  D   L
Sbjct: 75  SFDEGVSSLQEAVAEGLKKSKAEALLVTAPGEYRLLEVMQGWESALGVSVVLQD-DGRFL 133

Query: 142 LPPGSILNHALQMYKVYTPFRKALIQ---------------------------NLVQADL 174
                    A    ++   +    ++                              Q D+
Sbjct: 134 SSIDDFETWADGRKQLRMEYFYREMRRRYELLMDEDGEPEGGQWNYDADNRKGWRAQIDV 193

Query: 175 RSLPVPAI-RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
              P   + ++T  V       F D P    +    +  ++A      FC+  +  +   
Sbjct: 194 PERPAVTVDKVTREVIDLVEKHFPDNPGDLREFRLAVTREDAQAQFDWFCEHALDNFGTY 253

Query: 234 RDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWR 288
           +D  A +        +S YL+IG+L P     +++  +        SGA  ++ + L WR
Sbjct: 254 QDALAEESPWMFHGLISMYLNIGLLEPLAVCQQVEAAWRRGDCS-LSGAEGFIRQVLGWR 312

Query: 289 EFYRHLMAF-YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           E+ R +     P       F        W            G T    +  A++Q   +G
Sbjct: 313 EYVRGVYWHAMPDYAKRNTFDAKRSLPAWFW---------SGDTDMRCLSQALKQSLDLG 363

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           + H+  R++          +D     +++++  +D  
Sbjct: 364 YAHHIQRLMVIGNFALLAGLDVSEVCDWYLAVYVDAF 400


>gi|311743775|ref|ZP_07717581.1| deoxyribodipyrimidine photolyase [Aeromicrobium marinum DSM 15272]
 gi|311312905|gb|EFQ82816.1| deoxyribodipyrimidine photolyase [Aeromicrobium marinum DSM 15272]
          Length = 486

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 127/418 (30%), Gaps = 47/418 (11%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNF---DDSIEWLD- 95
           + +     WR   I  +++H +  +L +    L ++  +             D IE +  
Sbjct: 21  LLVDATASWRDRPIHRQKAHLLLTALRRRAAELGERAAIVTAADLPRLLTDRDDIEVVAP 80

Query: 96  ------SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN 149
                     +   T +  +R +  +E       + R   R++ + F   V      ++N
Sbjct: 81  TSWAERDLVGEHGAT-VLPSRGFVTDEATFAAWADGRDASRLVMEHFYRDVRTRERILMN 139

Query: 150 HALQMYKVYTPFRKALIQNLVQADLRS-LPVPAIRLTGPVTPSNIPRFFDYPFQAID--- 205
                      +     +   +      LP         V  +          + +    
Sbjct: 140 GPDDPEGGRWNYDHDNREPPPRGQATLGLPASWAPTEDDVDEAVRRDLDAMEAEGVQFLG 199

Query: 206 ----PMFPIGEQNALHILRKFCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPR 257
                 F      AL  L  F + ++  +    D       +   S+LS  L++G+L PR
Sbjct: 200 RDGPRWFAATRDEALAALDDFVRHRLPAFGPHEDAMLAADPVMAHSRLSVPLNLGLLDPR 259

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPS-VCMGKPFIPWTEKIE 315
           +          D    P +G   ++ +++ WR++  HL  +           +   E + 
Sbjct: 260 EVVAA-ALAAFDAGDAPLAGVEGFVRQVVGWRDWVWHLYWYLGRDYATSHDHLGAGEPLP 318

Query: 316 ---WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
              W  D   +++              +R++   GW H+  R++           D    
Sbjct: 319 SAWWALDGDGVESACLS--------HVLRRVGDTGWAHHIERLMVLGNFSLQRGHDPVEL 370

Query: 373 EEYFMSQLLDGD----LASNNGGWQWAASTGNDSVP------YFRIFNPTIQGKRFDP 420
             +F    +DG      A+  G  Q A      + P      Y    +    G  FDP
Sbjct: 371 NRWFTDAFVDGTPWVMPANVIGMSQHADGGLVATKPYAAGGAYVNRMSDHCGGCTFDP 428


>gi|312881359|ref|ZP_07741156.1| DNA photolyase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370999|gb|EFP98454.1| DNA photolyase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 514

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 106/353 (30%), Gaps = 50/353 (14%)

Query: 69  QKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNR--QYEINEV--------R 118
           ++      I        +F D  E +  Y ++    +  Y R  +Y + E          
Sbjct: 63  RREEGHHVIHLTLDDTQSFGDITELIGHYTVECGAEQFEYQRPDEYRLFEKLLTLELGEC 122

Query: 119 RDKLL--EKRLQHRVICKSFDD------SVLLP--------PGSILNHALQMYKVYTPFR 162
           + + +  E  L   +  + F +       V++            +L   ++       + 
Sbjct: 123 QVRAVDSEHFL---LPFEEFHNYFAKDKHVMMEHFYRKMRKRFDVLMEGVKPLGGKWNYD 179

Query: 163 KALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHIL 219
                 L   D+ SLP P      +   +                  ++P+    +L +L
Sbjct: 180 ANNRNKLKATDIESLPTPLMFETSVRSILIRLEKHNIETIGSITDKLLWPVNRNQSLSLL 239

Query: 220 RKFCKEKVYYYVEQRDIPAIQGTSQLSPY-------LSIGVLSPRQCWNRLKEEFVDLLI 272
             FC   +  +   +D    Q +S+ S Y       L+  +L P +  N     +     
Sbjct: 240 AYFCSVCLPNFGRFQDAMTAQHSSKWSLYHSRLSFSLNSKLLHPMEVINAALSAYKSSGE 299

Query: 273 KPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGY 330
              S    ++ + L WRE+ R       P            +         L   +  G 
Sbjct: 300 IDISQVEGFVRQILGWREYIRAVYWVNMPDYAQRNALNAQRD---------LPDFFWTGK 350

Query: 331 TGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           T    +  A+ Q     + H+  R++          +     +E+++   +D 
Sbjct: 351 TKMTCMKQAIGQSLDYAYAHHIQRLMVTGNFCLISEIVPEQVDEWYLGIYVDA 403


>gi|88802283|ref|ZP_01117810.1| deoxyribodipyrimidine photolyase-like protein [Polaribacter
           irgensii 23-P]
 gi|88781141|gb|EAR12319.1| deoxyribodipyrimidine photolyase-like protein [Polaribacter
           irgensii 23-P]
          Length = 510

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/388 (14%), Positives = 125/388 (32%), Gaps = 55/388 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDD---SIEWLDSYCLQQRVTKLFYNRQY-EINE 116
            +A++    ++L   G    Y + ++  +     E LD    +  + K     +Y   +E
Sbjct: 50  YFAAMRNFSQALQDAGHTVVYFKINDAKNTQSLTENLDLLIAENTIEKF----EYLAPDE 105

Query: 117 VRRDKLL---EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQAD 173
            R D  L      L+      S +               +   +   F + + +      
Sbjct: 106 YRLDAQLGSFCAALKIDASVYSTEHFYTEREDLTAFFKGKKQFLMEHFYRNMRKKHQILM 165

Query: 174 LRSLPV----------------PAIRLTGPVTPSNIPRFFDYPFQA-------IDPMF-- 208
           +   P                  A+        +++   F    +A       I+P F  
Sbjct: 166 IDKQPEGGKWNYDASNRKKWKGEALIPPEITFDTDVTALFSEIEKAGIKTIGKINPSFFE 225

Query: 209 -PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRL 263
            PI    A+  L  FC   + ++ + +D           S++S  ++  +++P++  + +
Sbjct: 226 YPISRLQAMEQLAYFCDHLLVHFGDYQDAMHTDKIYLFHSRISFAMNSKIIAPKEVVDAV 285

Query: 264 KEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            E + +       S    ++ + L WRE+ R +          + F+    K+       
Sbjct: 286 LETYREQEDAIDISQVEGFIRQILGWREYMRGMYWMLMPNYKKENFLENKNKLP------ 339

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
               +  G T    +  A+      G+ H+  R++          +     + +++   +
Sbjct: 340 --AFFWTGATKMNCLKNAIHNSLDNGYAHHIQRLMITGNFALLTQIHPDAIDAWYLGIYV 397

Query: 382 DG----DLASNNGGWQWAASTGNDSVPY 405
           D      L +  G  Q+A      + PY
Sbjct: 398 DAIEWVQLPNTRGMSQFADGGKIATKPY 425


>gi|253998729|ref|YP_003050792.1| deoxyribodipyrimidine photolyase-like protein [Methylovorus sp.
           SIP3-4]
 gi|253985408|gb|ACT50265.1| deoxyribodipyrimidine photolyase-related protein [Methylovorus sp.
           SIP3-4]
          Length = 523

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 116/363 (31%), Gaps = 52/363 (14%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW---LDSYCLQQRVTKLFYNRQYEINEV 117
           I+A++    + L + G   +Y    +  +  +    L++     + + + Y      +E 
Sbjct: 64  IFAAMRHFSQQLKRAGHRVRYIAIDDASNRQQLTANLEALIAHYQASTMQYQ---APDEW 120

Query: 118 RRDKLLEKR-LQHRVICKSFDDSVLLPPGSILNHALQMYKVY---TPFRKALIQNLVQAD 173
           R D LL        V     D          ++   +  K +     +R    Q+ V   
Sbjct: 121 RLDHLLAAWGASCPVPVTMVDSEHFYTTRHTVDAQFKGRKQWLMEHFYRSQRRQHRVLMT 180

Query: 174 LRSLP----------VPAIRLTGPVTPSNIPRFFDY----------------PFQAIDPM 207
               P                     P+++    D+                  QA    
Sbjct: 181 ADDQPEGGQWNFDHDNRKALPATQTLPADMRPQHDHQALWQTIVASGAAHFGDPQAEALR 240

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRL 263
           +P+  + AL  L  F  + +  + + +D  + +G     S LS  L++ +L+PR+     
Sbjct: 241 WPLSREEALTQLEVFISQGLPLFGDYQDALSTRGWRLFHSLLSFALNVKMLNPREVVAAA 300

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
           +  +    + P   A  ++ + L WRE+ R    A  P               EW     
Sbjct: 301 EAAWRQGKV-PLPAAEGFIRQILGWREYVRGVYWAQMPGYTEANALGHSRPLPEWFW--- 356

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
                  G T    + +A+ Q     + H+  R++          +D +    +++   +
Sbjct: 357 ------TGKTRMACVASAITQSLQHAYAHHIQRLMVIGNFALLAGLDPQALHRWYLGIYI 410

Query: 382 DGD 384
           D  
Sbjct: 411 DAF 413


>gi|111222316|ref|YP_713110.1| putative deoxyribodipyrimidine photolyase-like protein [Frankia
           alni ACN14a]
 gi|111149848|emb|CAJ61542.1| conserved hypothetical protein; putative deoxyribodipyrimidine
           photolyase-related protein [Frankia alni ACN14a]
          Length = 516

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 73/208 (35%), Gaps = 17/208 (8%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           F      A   L  F + ++  +    D           S LSP L++G+L P +     
Sbjct: 235 FAATRAEAGQALDWFVRHRLADFGPYEDAMLAGDWAMAHSTLSPALNLGLLHPLEVVAAA 294

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYP-SVCMGKPFIPWTEKIEWNKDSH 321
           ++ +      P +    ++ + L WRE+   +  +              T    W  D  
Sbjct: 295 EQAYR-RGEAPIASVEGFVRQVLGWREYVWGIYWWAGEDYADRNALGARTPLPRWFDD-- 351

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
            L A   G      + A +R+    GW+H+  R++           D R   ++F    +
Sbjct: 352 -LDADAVGAACLSDVLAGVRE---RGWVHHIPRLMVLGNWALQRGYDPRALTDFFHESFV 407

Query: 382 DGD---LASNNGGW-QWAASTGNDSVPY 405
           DG    +A N  G  Q+A      + PY
Sbjct: 408 DGYAWVMAPNVVGMSQYADGGLMATKPY 435


>gi|71733126|gb|AAZ40188.1| DNA-photolyase [Synechocystis sp. PCC 6803]
          Length = 60

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 240 QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLI-KPKSGAFSWLNELIWREFYRHLMAFY 298
            GTSQLS  L  GV+SPR  W    E +      + ++   +W  EL WREFY+H +  +
Sbjct: 1   DGTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARASIETWQQELAWREFYQHCLYSF 60


>gi|119945276|ref|YP_942956.1| deoxyribodipyrimidine photolyase-related protein [Psychromonas
           ingrahamii 37]
 gi|119863880|gb|ABM03357.1| deoxyribodipyrimidine photolyase-related protein [Psychromonas
           ingrahamii 37]
          Length = 516

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 115/357 (32%), Gaps = 55/357 (15%)

Query: 70  KSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
           + L  KG    Y    +   + D  + + +   +       + R  E     +   +  +
Sbjct: 61  QDLESKGHRVCYLTLDDSAAYQDLPQLIKALVARYACQSFTFQRPDEYRLRAQLAGMSAQ 120

Query: 127 LQHRVICKSFDDSVLLPPGSILNH-------------------------ALQMYKVYTPF 161
           L   V+     +  LLP   + +H                          L+       F
Sbjct: 121 LALPVVEVD-SEHFLLPFDELPSHFKAATHVRMENFYRLMRKRFSILMTGLKPAGGAWNF 179

Query: 162 RKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHI 218
                Q+  QADL+ +P P +        +             ++ +  +PI  Q +L +
Sbjct: 180 DANNRQSFKQADLKLIPKPLVFDNSADEYLQRIKQHNINTIGHESANVAYPINRQQSLVL 239

Query: 219 LRKFCKEKVYYYVEQRDIPAIQG-------TSQLSPYLSIGVLSPRQCWNRLKEEFVDLL 271
           L  FC+ ++  +   +D   +          S+LS  L+  +LSP +        + D  
Sbjct: 240 LDYFCQHQLANFGNFQDAMTVASPYAWSLYHSRLSFSLNCKMLSPMEVIETALIAYQDSA 299

Query: 272 IK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAW 326
            K   +    ++ + L WRE+ R +          + F+     +    WN D       
Sbjct: 300 GKITLAQIEGFVRQILGWREYVRGMYWVNMPNYAEQNFLGAKRNLPAFFWNAD------- 352

Query: 327 KQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
               T    + +A+ Q     + H+  R++          +     +++++   +D 
Sbjct: 353 ----TKMQCLKSAISQSLEHAYAHHIQRLMITGNFSLLAGIAPSQVDDWYLGIYIDA 405


>gi|224114766|ref|XP_002332277.1| predicted protein [Populus trichocarpa]
 gi|222832439|gb|EEE70916.1| predicted protein [Populus trichocarpa]
          Length = 53

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 6  AMSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFI 42
            S  +VW R D RI DN AL AA    D  V  VFI
Sbjct: 2  GSSKTIVWCRRDFRIEDNPALAAAAR--DGCVFPVFI 36


>gi|270159783|ref|ZP_06188439.1| deoxyribodipyrimidine photolyase-related protein [Legionella
           longbeachae D-4968]
 gi|289165449|ref|YP_003455587.1| Deoxyribodipyrimidine photolyase-related protein [Legionella
           longbeachae NSW150]
 gi|269988122|gb|EEZ94377.1| deoxyribodipyrimidine photolyase-related protein [Legionella
           longbeachae D-4968]
 gi|288858622|emb|CBJ12512.1| Deoxyribodipyrimidine photolyase-related protein [Legionella
           longbeachae NSW150]
          Length = 512

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 89/251 (35%), Gaps = 24/251 (9%)

Query: 167 QNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEK 226
              + +  + L  P   +T  V      +F +   Q I     +   +AL     F +  
Sbjct: 187 AKHIPSFPKRLNYPEDEITVEVLRLVKKKFSNNFGQLIPFELAVTRADALSEAHYFIEHC 246

Query: 227 VYYYVEQRDIPAIQGTS----QLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWL 282
           +  + + +D      TS    +LS YL+ G+L P +   R+ E+       P +    ++
Sbjct: 247 LISFGDYQDAMLTHETSLFHSRLSFYLNAGLLLPIEL-CRIAEQAYLQQKAPLNSVEGFI 305

Query: 283 NE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDA 338
            + L WRE+ R +  ++            T  +    W  D+ +             I  
Sbjct: 306 RQILGWREYIRGIYWYFMPAYKEMNHFQATRALPAFFWGSDTKMF-----------CIKE 354

Query: 339 AMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQW 394
            +RQ +   + H+  R++          ++ +   E++++   D      L +  G   +
Sbjct: 355 VVRQTSVEAYSHHIQRLMITGNFALLAGINPKEVCEWYLAVYADAYEWVELPNTLGMALY 414

Query: 395 AASTGNDSVPY 405
           A      S PY
Sbjct: 415 ADGGLMASKPY 425


>gi|149196502|ref|ZP_01873556.1| hypothetical protein LNTAR_08429 [Lentisphaera araneosa HTCC2155]
 gi|149140182|gb|EDM28581.1| hypothetical protein LNTAR_08429 [Lentisphaera araneosa HTCC2155]
          Length = 515

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 140/417 (33%), Gaps = 56/417 (13%)

Query: 50  QHGISARQSHFIYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKL 106
           QH   +R+  F+++++    K+L QKG   I        N  +  E L     ++ +  L
Sbjct: 42  QHH--SRKMLFLFSAMRHFHKTLLQKGYRSIYITLDAPDNQQNFQENLRIIINEKNINTL 99

Query: 107 FYNRQYEINEVRRDKLLEKRLQHRVI--CKSFDDSVLLPPGSILNHALQ----MYKVYTP 160
                 E  E R +  +    +   I    + DD  L+      N+A      + + +  
Sbjct: 100 IV---CEPGEWRLENEMYHWEEKLEIPVVITEDDRFLMSRQEFKNYAHGRKSLLMEDFYH 156

Query: 161 FRKALIQNLVQADLR---SLPVPAIRLTGPVTPSNIPRFFDYP--------FQAIDPMFP 209
             +     L++ +              +     + IP+  ++P         + I+  FP
Sbjct: 157 MMRKRYSYLMENNKPTGGKWNYDKNNRSKYDYKTEIPKRLEFPPDSITLNIKELIEQWFP 216

Query: 210 ------------IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGT----SQLSPYLSIGV 253
                          ++AL  L+ F +  +  Y + +D           S+LS  ++ G+
Sbjct: 217 NRFGSMEKFTEACTREDALKCLKHFIETSLENYGKYQDAMLDDHHLLFHSRLSHLINSGL 276

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWT 311
           L+P++      E F     +  +   +++ ++I WREF R +     P            
Sbjct: 277 LNPKEVCEYALENFKVNNQEDLNSIEAFIRQIIGWREFIRGIYWLKMPDYLESNALDAH- 335

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
                     L   +  G      +   ++      + H+  R++    L   + ++ + 
Sbjct: 336 --------QSLPNFYWTGDCKMNCVSKVIKDTQKYAYSHHIQRLMITGNLALLMGIEPKE 387

Query: 372 GEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
             E++++   D      L +  G   +A      + PY    N   +   F     +
Sbjct: 388 IHEWYLAVYDDAYEWVELPNTYGMGIYADGGILATKPYAASGNYINKMSNFCKNCQY 444


>gi|89094240|ref|ZP_01167182.1| hypothetical protein MED92_13658 [Oceanospirillum sp. MED92]
 gi|89081495|gb|EAR60725.1| hypothetical protein MED92_13658 [Oceanospirillum sp. MED92]
          Length = 513

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 124/387 (32%), Gaps = 60/387 (15%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSI-EWLDSYC 98
           + I T ++  Q   + +++    +++    + L +KG    Y    +  +S+ E +D   
Sbjct: 34  LMIETVDESNQPPSNKQRTVLFISAMRHFSQELREKGFKVNYFTLRDRINSLNEGIDCVL 93

Query: 99  LQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF--DDSVLLPPGSILNHALQMYK 156
             + V+++   +     E R    L  +++ R +      D+  +  PG   +      +
Sbjct: 94  ATKTVSQI---KMVLPGEKRVLDTLSLQIKGRQLSLQVLPDNHFMTEPGEFQHWLKDKKQ 150

Query: 157 VYTPFRKALIQNLV---------------------QADLRSLPVPAIRLTGPVTPSNI-- 193
               +    ++                        +        P       +TP N+  
Sbjct: 151 PRMEYWYRYLRKKHNILINDFGKPEGEKWNFDASNRRPFGKKGPPTPGNHPDITPDNMTL 210

Query: 194 -------PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLS 246
                      D P       +P+  + AL +L  F  +++  + + +D    Q      
Sbjct: 211 EVIDEINTLIPDLPGSLNSFEWPVCRKQALSLLDSFISDRLPLFGDFQDAMWQQ-----E 265

Query: 247 PYLSI---------GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA 296
           P+L+           +L P +      + + +    P +    ++ + L WRE+ R L  
Sbjct: 266 PFLNHSWLSSSLNLKLLHPWEVIEAAIQAYKN-GNAPLNAVEGFIRQILGWREYVRGLYW 324

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMI 356
            Y         +     +           +  G T    +  ++ Q+   G+ H+  R++
Sbjct: 325 TYSQKWEQMNALEHHRDLP--------AFYWNGDTKMNCLRESISQVLEKGYGHHIQRLM 376

Query: 357 TASFLVKDLLVDWRIGEEYFMSQLLDG 383
                      D +    +++   +D 
Sbjct: 377 VTGLFALLYGADPQQVHRWYLGMYVDA 403


>gi|159043152|ref|YP_001531946.1| deoxyribodipyrimidine photolyase-like protein [Dinoroseobacter
           shibae DFL 12]
 gi|157910912|gb|ABV92345.1| deoxyribodipyrimidine photolyase-related protein [Dinoroseobacter
           shibae DFL 12]
          Length = 508

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 54/394 (13%), Positives = 116/394 (29%), Gaps = 48/394 (12%)

Query: 24  KALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQ 83
            AL  A    D  V+A  +A   ++  H    ++  FI+A++ +     +  G    Y +
Sbjct: 17  AALQEADKARDVIVMA-EVAHEARYVPHH--PKKIAFIFAAMRKFAAKRAADGWRVAYTR 73

Query: 84  CSNFDD---SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLE------------KRLQ 128
             + ++       L         T++      E  E R    LE            + L 
Sbjct: 74  LDDPENSGSIPGELLRRAAAHDATEVIA---TEPGEWRLISALEDCPIPVLQMPDTRFLA 130

Query: 129 HRVICKSFDD-----SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIR 183
                +++ +      +      +      +     P       +          +    
Sbjct: 131 SHERFETWAEGRKQLRMEYFYREMRRETGYLMDGDKPAGGKWNFDHDNRKPAPEDISFEG 190

Query: 184 LTGPVTPSNIPRFFDY-------PFQAIDPMFPIGE-QNALHILRKFCKEKVYYYVEQRD 235
                    +    D         F  + P +   +   A   +  F    +  + + +D
Sbjct: 191 PLKFTPDEVVEEVLDLVERRFGNNFGTLRPFWFATDPHQAREAMTHFIDHALPRFGDYQD 250

Query: 236 IPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREF 290
                      S LS Y++ G+L  R+      E        P +    ++ ++I WRE+
Sbjct: 251 AMLADNRFLYHSILSVYINAGLLDWREV-CDAAEAAWRAGHAPLNAVEGFIRQIIGWREY 309

Query: 291 YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
            R +          +    +T +     D+ L   +  G T    +  A+ Q     + H
Sbjct: 310 MRGIYF--------REGPDYTARNALGHDADLPDFFWTGETDMRCVAKAVGQTRDEAYAH 361

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           +  R++          V      E++++   D  
Sbjct: 362 HIQRLMVTGNFALLAGVAPAQVHEWYLAVYADAY 395


>gi|332368588|gb|AEE61369.1| cryptochrome 3 [Oncorhynchus kisutch]
          Length = 50

 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 375 YFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFI 425
            F   LLD D + N G W W  S       +F  + P   G+R DP G +I
Sbjct: 1   VFEELLLDADWSVNAGSWMW-LSCSAFFQQFFHCYCPVGFGRRTDPSGDYI 50


>gi|148272473|ref|YP_001222034.1| hypothetical protein CMM_1293 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830403|emb|CAN01338.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 487

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 52/410 (12%), Positives = 117/410 (28%), Gaps = 37/410 (9%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQK---GIVFQYHQCSNFDDSIEWLD- 95
           + I +     +      ++H I + +    ++L  +     V  Y +     D +E +D 
Sbjct: 23  LLIESRGLLARRPYHRAKAHLILSGIRHRARALGDRVEFHQVDHYREVVEGRDDLEVIDP 82

Query: 96  ------SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN 149
                     +     +  +R +  +E    + +  R  +R++ + F        G +++
Sbjct: 83  TSRGLRRLVAEIGAE-VLPSRGFVTSEQEFAEWMAGRTSNRLVMEDFYRWSRARTGILMD 141

Query: 150 HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI----- 204
               +   +        +    A    LP P       +         ++  + I     
Sbjct: 142 GDDPVGGRWNYDHDNRERPPKGATSLGLPEPWWPEEDDIDAEVRADLDEWERKGIVRFVG 201

Query: 205 ---DPMFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLSPR 257
                 F +  +     L  F   ++  +    D           S LS  +++GVL P 
Sbjct: 202 EDGPRRFAVTPEEGRLALDDFVASRLNDFGPFEDASLQGDWTMAHSLLSATMNMGVLDPA 261

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
               R+  E        +S        + WR++  HL   +      +  +     +   
Sbjct: 262 DVIERITAEHAAGRAPIQSVEGIVRQIMGWRDYVWHLYWAFEDDYTSQNRLDAHRGVPTA 321

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
                    +        +   + ++ T GW H+  R++    L      D     ++F+
Sbjct: 322 LQELDASGIEAA-----CLSHVVDKVRTHGWAHHIERLMILGNLALQRGYDPAAMNDWFI 376

Query: 378 SQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
              +DG                  +        P   G      G +I  
Sbjct: 377 DSFVDGTP---WVMPANVVGMALHADGGRMATKPYAGG------GAYIDR 417


>gi|88859579|ref|ZP_01134219.1| hypothetical protein PTD2_21387 [Pseudoalteromonas tunicata D2]
 gi|88818596|gb|EAR28411.1| hypothetical protein PTD2_21387 [Pseudoalteromonas tunicata D2]
          Length = 517

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 65/459 (14%), Positives = 133/459 (28%), Gaps = 83/459 (18%)

Query: 13  WLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSH---FIYASLLQVQ 69
           W + D    DN                +++   E  ++   +          +A++ Q  
Sbjct: 22  WFKQD---KDN---------------ILYVIA-ELRQETDYAPHHIQKVCGFFAAMGQFA 62

Query: 70  KSLSQKGIVFQYHQCSNFDD---SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR 126
            +L Q G    +    + +        +   CLQ +   + Y +    +E R  + L + 
Sbjct: 63  NALKQAGFNVLHLTLDDTEHDANLPHLIARLCLQYQCKSIEYQQ---PDEYRLAQQLNEF 119

Query: 127 LQHRVICKSFDDSVLLPPGS--------------------------ILNHALQMYKVYTP 160
               +     D    + P +                          +L H  +       
Sbjct: 120 DFTPITKVCVDSEHFMLPFNEISQYFKKDKHVTMEHFYRKMRKRFNLLMHENEPLGGQWN 179

Query: 161 FRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALH 217
           F       L + DL ++P P    I ++                     ++P+    A  
Sbjct: 180 FDADNRVKLKKTDLAAIPAPLLFEIDVSDIKARLVRHHVKTIGQLTEPFIWPVNRTQAKE 239

Query: 218 ILRKFCKEKVYYYVEQRDIPAIQG-------TSQLSPYLSIGVLSPRQCWNRLKEEFVDL 270
           +L  FC+  +  +   +D              S+LS  ++  +L P Q        +   
Sbjct: 240 LLAFFCQHLLPNFGRFQDAMTANSEHSWSLYHSRLSFAINCKMLHPLQVIQAAVSAYEQS 299

Query: 271 -LIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
             +   +    ++ + L WRE+ R +           P       ++  +D  L   +  
Sbjct: 300 DGLINLAQVEGFVRQILGWREYVRGVY------WTNMPDYKTYNTLDAKRD--LPGYFWH 351

Query: 329 GYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASN 388
           G T    +  A+ Q  T  + H+  R++          +D          Q+ D  L   
Sbjct: 352 GKTKMRCLHHAISQSLTTAYAHHIQRLMVTGNFCLLTGIDP--------DQVDDWYLGIY 403

Query: 389 NGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
               +W        +  F   N  +  K +   G +I  
Sbjct: 404 IDAIEWVELPNTRGMTQF-ADNGIVATKPYAASGNYINK 441


>gi|330829795|ref|YP_004392747.1| Cryptochrome/photolyase [Aeromonas veronii B565]
 gi|328804931|gb|AEB50130.1| Cryptochrome/photolyase [Aeromonas veronii B565]
          Length = 506

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 105/363 (28%), Gaps = 47/363 (12%)

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFD 137
               + + + D    L++     + +   +      +E R    L+       +     +
Sbjct: 70  LTLDESARWPDLPGLLEAQLEAHQASSFAWQ---SPDEWRLASQLKSWAAGLAIPATEVE 126

Query: 138 DSVLLPPGS-----------------------ILNHALQMYKVYTPFRKALIQNLVQADL 174
               L P                         +L+   Q       F       L  +  
Sbjct: 127 SEHFLTPRDGWQRYPHSRMEFFYRALRKQYQVLLDERGQPLGGRWNFDDENRAKLPASQP 186

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDY--PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
              P+        +                A    +PI  + +  +L  F    + ++  
Sbjct: 187 IPEPLTFANEVSEIDAMLTRHGVSTIGEADASKLPWPITRRQSRELLAHFLAHCLPHFGR 246

Query: 233 QRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LI 286
            +D  + +G     S+LS  L+  +L P +     +  +         +    ++ + L 
Sbjct: 247 YQDALSERGWSLFHSRLSFSLNSKMLHPLEVIRAAETHWQANQATITLAQVEGFIRQILG 306

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF R L            F+     +           +  G T    +  A+ Q    
Sbjct: 307 WREFVRALYWEKMPDYKQSNFLEAKRPLP--------GFFWNGETRMACVRHAIGQSLEH 358

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDS 402
           G+ H+  R++          +D    +++++   +D     +L +  G  Q+A      S
Sbjct: 359 GYAHHIQRLMVTGNFALLAGIDPDEVDQWYLGIYVDAIEWVELPNTRGMSQFADGGLMGS 418

Query: 403 VPY 405
            PY
Sbjct: 419 KPY 421


>gi|117617580|ref|YP_856493.1| cryptochrome/photolyase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117558987|gb|ABK35935.1| cryptochrome/photolyase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 506

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 104/363 (28%), Gaps = 47/363 (12%)

Query: 79  FQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQH-RVICKSFD 137
               + + + D    L +     +   + +      +E R    L+       +     D
Sbjct: 70  LTLDESARWPDLPSLLAAQLEAHQADSVAWQ---SPDEWRLASQLKSWAAGLAIPATEVD 126

Query: 138 DSVLLPPGS-----------------------ILNHALQMYKVYTPFRKALIQNLVQADL 174
               L P                         +L+   Q       F       L  + L
Sbjct: 127 SEHFLTPHDGWQRYPHSRMEFFYRALRKQYRVLLDERGQPLGGRWNFDDENRAKLPASQL 186

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQA--IDPMFPIGEQNALHILRKFCKEKVYYYVE 232
              P+        +             +A      +PI  + +  +L  F    + ++  
Sbjct: 187 IPAPLTFANEVSDIDAMLTRHGVSTIGEADVSSLPWPISRRQSRELLAHFLAHCLPHFGR 246

Query: 233 QRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LI 286
            +D  + +G     S+LS  L+  +L P +     +  +         +    ++ + L 
Sbjct: 247 YQDALSERGWGLFHSRLSFSLNSKMLHPLEVIRAAEAHWQANQGSITLAQVEGFIRQILG 306

Query: 287 WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           WREF R L            ++     +           +  G T    +  A+ Q    
Sbjct: 307 WREFVRALYWEKMPDYQQANYLGAKRSLP--------GFFWSGKTNMACVRHAIGQSLDH 358

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDS 402
            + H+  R++          +D    + +++   +D     +L +  G  Q+A      S
Sbjct: 359 AYAHHIQRLMVTGNFALLAGIDPDEVDAWYLGIYVDAIEWVELPNTRGMSQFADGGLMGS 418

Query: 403 VPY 405
            PY
Sbjct: 419 KPY 421


>gi|76157554|gb|AAX28442.2| SJCHGC08270 protein [Schistosoma japonicum]
          Length = 165

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 1   MKATTAMSVHLVWLRNDLRITDNKALYAACHNS---DAKVIAVFIATPEQWRQHGISARQ 57
           + +   M V L W+  D R+ DN A   A   +      +   F   P+   +     R 
Sbjct: 76  LTSDIKMGV-LYWMIRDQRVQDNWAFLFAQRLALKFKVPLHVCFCFVPKYQAETL---RH 131

Query: 58  SHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89
             F+   L +V+K   +  I F     S+  D
Sbjct: 132 YTFMIEGLKEVEKECRELCIPFHITSASSIPD 163


>gi|167626680|ref|YP_001677180.1| deoxyribodipyrimidine photolyase-like protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167596681|gb|ABZ86679.1| deoxyribodipyrimidine photolyase-related protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 509

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 20/181 (11%)

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
            + AL  L  F  E++  + + +D      A    S +S Y++ G+L P +C    ++  
Sbjct: 232 REQALEALDLFINERLSSFGDYQDAMLEGQAWMHHSHISMYINSGLLLPMECIKAAEKAH 291

Query: 268 VDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLL 323
            +    P +    ++ + L WREF R +             +  T K+    W+ D+ + 
Sbjct: 292 YN-GNAPLNAVEGFIRQILGWREFVRGVYWLRMPDYHDMNHLEATLKLPSFYWDADTKMN 350

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
              +            +++     + H+  R++          +D +   E+++    D 
Sbjct: 351 CLHQ-----------CVKETKQNAYAHHIQRLMVLGNFALLAGIDPKYVNEWYLLVYADA 399

Query: 384 D 384
            
Sbjct: 400 Y 400


>gi|77465091|ref|YP_354594.1| hypothetical protein RSP_3077 [Rhodobacter sphaeroides 2.4.1]
 gi|77389509|gb|ABA80693.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 508

 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 130/400 (32%), Gaps = 56/400 (14%)

Query: 21  TDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQ 80
            D  AL AA   +D  V+A  +     +  H    ++   I A++ +  + L ++G    
Sbjct: 14  DDLPALRAADPAADLVVMA-EVMEEGTYVPHH--PQKIALILAAMRKFARRLQERGFRVA 70

Query: 81  YHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF--DD 138
           Y +  + D           +   T      +  +     D  L + L+   +   F  DD
Sbjct: 71  YSRLDDPDTGPSIGAELLRRAAETG----AREAVATRPGDWRLIEALEAMPLPVRFLPDD 126

Query: 139 SVLLPPGSILNHALQMYKVYTPFRKALIQN------------------------------ 168
             L P            ++   +    ++                               
Sbjct: 127 RFLCPADEFARWTEGRKQLRMEWFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDL 186

Query: 169 LVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVY 228
           L    LR  P   +R    +  +  PR F    +     +      AL  L  F +E + 
Sbjct: 187 LRPRPLRFEPDAEVRAVLDLVEARFPRHF---GRLRPFHWATDRAEALRALDHFIRESLP 243

Query: 229 YYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE 284
            + +++D           + LS  +++G+L P +   R + E+ +    P +    ++ +
Sbjct: 244 RFGDEQDAMLADDPFLSHALLSSSMNLGLLGPMEVCRRAETEWREGRA-PLNAVEGFIRQ 302

Query: 285 -LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
            L WRE+ R +        +    +  +  +        L   K   T    + AA+ Q 
Sbjct: 303 ILGWREYVRGIWTLSGPDYIRSNGLGHSAALP------PLYWGKP--TRMACLSAAVAQT 354

Query: 344 NTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             + + H+  R++          VD     E+++S  +D 
Sbjct: 355 RDLAYAHHIQRLMVTGNFALLAGVDPAEVHEWYLSVYIDA 394


>gi|217968966|ref|YP_002354200.1| deoxyribodipyrimidine photolyase-related protein [Thauera sp. MZ1T]
 gi|217506293|gb|ACK53304.1| deoxyribodipyrimidine photolyase-related protein [Thauera sp. MZ1T]
          Length = 511

 Score = 50.0 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 82/276 (29%), Gaps = 17/276 (6%)

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMY--KVYTPFRKALIQNLVQADL 174
           +     L +R   +V    F    L     IL  A  +    V+    +   +       
Sbjct: 132 LAERAELAQRFAAKVPRMEFFYRDLRRRHRILVDADDVPVGGVWNFDAQNREKWPGDPPA 191

Query: 175 RSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM-FPIGEQNALHILRKFCKEKVYYYVEQ 233
            + P     L                    D + +PI  + A   L  F +  + ++   
Sbjct: 192 PAWPWRGHDLCALWDEIVAAGVRTIGAPHADQLRWPITRREARAGLAHFIEHALPWFGPY 251

Query: 234 RDIPAIQGT----SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWRE 289
           +D  + + T    S LS  L++ +L PR+  +     +    ++  S        L WRE
Sbjct: 252 QDAMSTRSTTLFHSGLSFALNVKLLHPREVIDAALAAWQAGKVELASCEGFVRQILGWRE 311

Query: 290 FYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGW 348
           F R +     P               EW            G T    +  A+ Q     +
Sbjct: 312 FVRGVYWARMPGYAQANALDARRPLPEWYW---------SGDTKMACLRHAIAQSLDTAY 362

Query: 349 MHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            H+  R++           D    + +++   +D  
Sbjct: 363 AHHIQRLMITGNFALLAGCDPDAVDAWYLGIYIDAF 398


>gi|120404245|ref|YP_954074.1| deoxyribodipyrimidine photolyase--like protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957063|gb|ABM14068.1| deoxyribodipyrimidine photolyase-related protein [Mycobacterium
           vanbaalenii PYR-1]
          Length = 494

 Score = 50.0 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 67/217 (30%), Gaps = 15/217 (6%)

Query: 176 SLPVPAIRLTGPVTPSNIPRFFDYPFQAID--PMFPIGEQNALHILRKFCKEKVYYYVEQ 233
             P                   D     +D   +F +    A   L +F + ++  +   
Sbjct: 181 PAPYQPREDDIDEQVRRDLDAMDLDTVGVDGPRLFAVTPAEAKRALARFIEHRLPSFGRY 240

Query: 234 RD----IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWR 288
            D           S LS  L++GVL P    +  +  + D    P +    ++ + L WR
Sbjct: 241 EDAVMAEDWAMAHSLLSVPLNLGVLHPLDAVDEAERAYCDQQA-PLAAVEGFIRQILGWR 299

Query: 289 EFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIG 347
           E+  HL   + P           T    W  D        Q       +  A++ +   G
Sbjct: 300 EYMWHLYWHFGPEYAAKNELAAHTPPPTWWTDLDADAVTAQ------CLHHALKGVRDRG 353

Query: 348 WMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           W H+  R++                 E+F +  +DG 
Sbjct: 354 WTHHIQRLMILGSHALQRGYRPDELTEWFATAYVDGF 390


>gi|330825548|ref|YP_004388851.1| deoxyribodipyrimidine photolyase-like protein [Alicycliphilus
           denitrificans K601]
 gi|329310920|gb|AEB85335.1| deoxyribodipyrimidine photolyase-related protein [Alicycliphilus
           denitrificans K601]
          Length = 512

 Score = 50.0 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 71/246 (28%), Gaps = 18/246 (7%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY--PFQAI 204
           +L+           F     +                    +               QA 
Sbjct: 167 LLDADGAPEGGKWNFDHDNRKRWPGTPPEPADWRPRHDHSDLWRMVQRAGVQSFGDPQAA 226

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCW 260
              +P+    AL  L  F    + ++ +  D  A Q      S LS  L++ +L P +  
Sbjct: 227 ALRWPLNRSEALACLDAFIDTALPHFGDYEDALAAQAPRLFHSLLSFALNVKMLQPLEVV 286

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNK 318
            R +  +      P +    ++ +++ WRE+ R +  A  P           T    W  
Sbjct: 287 QRAEAAWR-AGQAPLAAVEGFVRQIVGWREYVRGIYWAHMPGYASHNALAQHTSLPRWFW 345

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
                     G T    +  A+ Q       H+  R++          ++ +    +++ 
Sbjct: 346 ---------SGDTHMRCLHLAITQSLQTAHAHHIQRLMVIGNFALLAGLEPQALHRWYLG 396

Query: 379 QLLDGD 384
             +D  
Sbjct: 397 IYIDAF 402


>gi|254489714|ref|ZP_05102910.1| Deoxyribodipyrimidine photolyase-related protein [Methylophaga
           thiooxidans DMS010]
 gi|224465123|gb|EEF81376.1| Deoxyribodipyrimidine photolyase-related protein [Methylophaga
           thiooxydans DMS010]
          Length = 517

 Score = 50.0 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 56/401 (13%), Positives = 125/401 (31%), Gaps = 58/401 (14%)

Query: 50  QHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE-WLDSYCLQQRVTKLF- 107
           Q   S +++    +++    + +  KG    Y   ++   S E  L++      V+++  
Sbjct: 41  QTPSSKQRTTLFLSAMRHFAEDIKSKGYRLSYTTLADEQASFESALEATLKNNNVSRVRC 100

Query: 108 ------------------YNRQYEINEVR----RDKLLEKRLQHRVICK-SFDDSVLLPP 144
                             YN   E    +    R    ++ L  R   +       L   
Sbjct: 101 VLAGDMTVVSRLESFFSQYNLSIEWLADQHFITRQGEFQQWLDERKQPRMEHWYRHLRKD 160

Query: 145 GSILNHA-----LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199
             IL           +      R++  +   Q    +       +T  V         + 
Sbjct: 161 RQILMDDNQAPIGGQWNFDKDNRRSFDKKGPQLPSSNSRFKHDAITKHVIQDVETFCAEL 220

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGV------ 253
           P    D  +P+  + AL  L  F K ++  + + +D    +      P+L          
Sbjct: 221 PGSLADFNWPVTRKQALQQLDAFIKYRLPSFGDYQDAMWTEQ-----PFLFHACLSSSLN 275

Query: 254 ---LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIP 309
              L+P +  N+ ++ + +    P +    ++ + L WRE+ R L   Y    +    + 
Sbjct: 276 LKLLNPLEVINKAEQAYYE-NNAPLNAVEGFIRQVLGWREYIRGLYWSYREHWLDYNALD 334

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
               +           +    T    +  ++ Q+   G+ H+  R++          +  
Sbjct: 335 HQRALP--------SFYWHADTDMKCMHHSISQVLEHGYGHHIQRLMVTGLFSLLWGIKP 386

Query: 370 RIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYF 406
                +++   +D     ++ +  G  Q+A      S PY 
Sbjct: 387 DAIHRWYLGMYVDAVAWVEIPNTLGMSQYADGGIVGSKPYI 427


>gi|297727355|ref|NP_001176041.1| Os10g0167600 [Oryza sativa Japonica Group]
 gi|255679238|dbj|BAH94769.1| Os10g0167600 [Oryza sativa Japonica Group]
          Length = 154

 Score = 50.0 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR--IGEEYF-MSQLL 381
             +   T  P+ +A+  ++   G MH  +RM  A  +++             Y      +
Sbjct: 15  QLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWAKKILEWTSGPEEALSTAIYLNDKYEI 74

Query: 382 DGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQGKRFDPQG--TFIRH 427
           DG   S   G  W+    +D            R  N     ++FD     ++++ 
Sbjct: 75  DGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKR 129


>gi|91217385|ref|ZP_01254345.1| deoxyribodipyrimidine photolyase-like protein [Psychroflexus
           torquis ATCC 700755]
 gi|91184493|gb|EAS70876.1| deoxyribodipyrimidine photolyase-like protein [Psychroflexus
           torquis ATCC 700755]
          Length = 523

 Score = 50.0 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 80/229 (34%), Gaps = 24/229 (10%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRL 263
           +P   +  L +L  FC   + ++ +  D           S+LS  ++  +LSPR+     
Sbjct: 239 WPTSRKECLEVLDYFCTHLLVHFGDYEDALHTDEKFLFHSRLSFSMNSKMLSPREVIETT 298

Query: 264 KEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSH 321
            + + D   +   S    ++ + L WREF R +          K         E    + 
Sbjct: 299 LDYYYDHKEEIDISQIEGFIRQILGWREFMRGVYWQEMPEYKSKN--------ELQNTNK 350

Query: 322 LLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLL 381
           L   +  G T    +  ++ Q     + H+  R++         + D    + +++   +
Sbjct: 351 LPDFYWTGDTKMNCLKHSVNQSLDDAYAHHIQRLMILGNFALLTMTDPDEVDAWYLGVYI 410

Query: 382 DG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIR 426
           D     +L +  G  Q+A      + PY         G   +  G + +
Sbjct: 411 DAIEWVELTNTRGMSQFADGGIVATKPY------VSSGSYINKMGNYCK 453


>gi|260429435|ref|ZP_05783412.1| photolyase [Citreicella sp. SE45]
 gi|260420058|gb|EEX13311.1| photolyase [Citreicella sp. SE45]
          Length = 509

 Score = 50.0 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 14/182 (7%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRL 263
           + +    AL  LR F K+ +  + + +D             +SPYL+IG+L+  +   + 
Sbjct: 227 WAVTRDEALRALRHFIKDCLPTFGDYQDAMKAGEDFLFHGVISPYLNIGLLTAAEVCEKA 286

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHL 322
           ++ + D  + P + A  ++ + L WREF R +            F+     +        
Sbjct: 287 QQAWQDGDV-PLNAAEGFIRQILGWREFVRGIYWTEMPGYEDSNFLNAKRDLP------- 338

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
              W  G T    ++  +       + H+  R++          V  R  E++++    D
Sbjct: 339 EMYWGAG-TRMRCMEECIGTTRRNAYAHHIQRLMVTGNFALLAGVAPRQIEKWYLEVYAD 397

Query: 383 GD 384
             
Sbjct: 398 AF 399


>gi|194336953|ref|YP_002018747.1| DNA photolyase, class 2 [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309430|gb|ACF44130.1| DNA photolyase, class 2 [Pelodictyon phaeoclathratiforme BU-1]
          Length = 104

 Score = 50.0 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 11 LVWLRNDLRITDNKALYAACHNSD---AKVIAVFIATPEQWRQHGISARQSHFIYASLLQ 67
          + W+  D R+  N AL  A   ++     ++ +F   P          R   F+   L +
Sbjct: 21 IYWMSRDQRVRHNWALLFARRKAELLQQPLVVLFTLAPTFLGAPL---RHYDFMLKGLRE 77

Query: 68 VQKSLSQKGIVFQYHQCSN 86
          V+  L    I F   Q   
Sbjct: 78 VEADLKTLNIPFLLLQSQP 96


>gi|238592825|ref|XP_002393022.1| hypothetical protein MPER_07324 [Moniliophthora perniciosa FA553]
 gi|215459875|gb|EEB93952.1| hypothetical protein MPER_07324 [Moniliophthora perniciosa FA553]
          Length = 74

 Score = 50.0 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 11 LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQS 58
          L W R DLR+  + AL+AA       +  ++   PE    H +   +S
Sbjct: 7  LYWFRTDLRLHSSPALHAALSLQPEALYPIWTWDPEYVYAHRVGVNRS 54


>gi|148260724|ref|YP_001234851.1| deoxyribodipyrimidine photolyase-related protein [Acidiphilium
           cryptum JF-5]
 gi|146402405|gb|ABQ30932.1| deoxyribodipyrimidine photolyase-related protein [Acidiphilium
           cryptum JF-5]
          Length = 513

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 111/371 (29%), Gaps = 51/371 (13%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFY 108
               ++   + A++    ++L  +G+  +Y    +          +   C   +   +  
Sbjct: 43  PHHPQKIALVLAAMRHFARALRARGVAVRYVALDDPANTGTLAGEVARACAALKPDAIIA 102

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSV-------LLPPGSILNHALQMYKVYTPF 161
               E  E R  + +    +   I     D              +     L+M   Y   
Sbjct: 103 ---TEPGEYRVLEAMRGWAEQTGIPCEIRDDTRFLCSRADFAAWAGSKKQLRMEFFYREM 159

Query: 162 RKALI------------QNLVQADLRSLP----------VPAIRLTGPVTPSNIPRFFDY 199
           R+                N    + +SLP           P    T  V      RF D+
Sbjct: 160 RRRHRILMEGDDPVGGKWNYDPENRKSLPAGLAPPEAKRFPPTAETREVLALVAARFADH 219

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLS 255
                   +P+  ++A      F   ++  + + +D  A        S +S  L++G+L 
Sbjct: 220 YGSLDAFDWPVTARDAEAGFADFLARRLPGFGDWQDAMAADRDFMFHSLVSVPLNLGLLD 279

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEK 313
           P     R + E+ +    P +    ++ + L WREF R +     P              
Sbjct: 280 PLDLCRRAEAEY-EAGRAPLNAVEGFIRQILGWREFIRGIYWRHMPGYATLNALGA---- 334

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
                D  L   +  G T    +  A+ Q     + H+  R++          +     +
Sbjct: 335 -----DLPLPDFYWTGATDMRCMAQAIGQTLRRAYAHHIQRLMVTGNFALLAGIAPDAVD 389

Query: 374 EYFMSQLLDGD 384
            ++++   D  
Sbjct: 390 RWYLAVYADAY 400


>gi|126727586|ref|ZP_01743419.1| hypothetical protein RB2150_09784 [Rhodobacterales bacterium
           HTCC2150]
 gi|126703176|gb|EBA02276.1| hypothetical protein RB2150_09784 [Rhodobacterales bacterium
           HTCC2150]
          Length = 511

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 112/365 (30%), Gaps = 49/365 (13%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  FI++++      L+++G+  +Y +  + D++              ++        +E
Sbjct: 46  KIAFIFSAMRHFAAELAEQGLNLRYVRYDDPDNAGSLSGEVARAVGKHEIDEVIVTTPSE 105

Query: 117 VRRDKLLEKRLQHRVICKSF--DDSVL-----LPPGSILNHALQMYKVYTPFRKALI--- 166
            R    + +  Q   +  S   DD  L         +     L+M   Y   R+      
Sbjct: 106 YRLSDDMSRWAQALNVHVSIRSDDRFLSSASDFAAWADGRKQLRMEFFYREMRRRYSILM 165

Query: 167 --------QNLVQADLRSLPVPAIR-----------LTGPVTPSNIPRFFDYPFQAIDPM 207
                   Q    A+ R  P   +            +T  V       F D+        
Sbjct: 166 DQDGPIGGQWNYDAENRKPPSNGLDVPTTYRAYPDAITQEVMDLVGTHFADHFGDLTPFH 225

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRL 263
           F +    A+    +F   ++  + + +D           S +  YL+ G+L P +C  R 
Sbjct: 226 FAVTRDQAIVAFEEFIARRLKMFGDYQDAMIQGEPWMFHSHIGLYLNCGLLEPLECIQRA 285

Query: 264 KEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKD 319
           +  + +    P +    ++ + L WRE+ R +            F      +    W  D
Sbjct: 286 EAAYHN-GTAPLNAVEGFIRQILGWREYVRGIYWLKMPDYKTVNFFDAQRSLPEFYWTAD 344

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
           + +    +            + +     + H+  R++          +D      ++M  
Sbjct: 345 TQMNCMRQ-----------CITETKQNAYAHHIQRLMVLGNFALIAGLDPDEVNNWYMLV 393

Query: 380 LLDGD 384
             D  
Sbjct: 394 YADAY 398


>gi|255019879|ref|ZP_05291954.1| deoxyribodipyrimidine photolyase-like protein [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970659|gb|EET28146.1| deoxyribodipyrimidine photolyase-like protein [Acidithiobacillus
           caldus ATCC 51756]
          Length = 515

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 111/385 (28%), Gaps = 52/385 (13%)

Query: 38  IAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS--NFDDSIEWLD 95
           + + +    + ++      +     +++    ++L Q+G+  +Y   +   +DD +  + 
Sbjct: 32  LCLLVEARAEAQRVWSHKARIALFLSAMRHGAEALRQRGLRVEYWALAEHPYDDLVTAVA 91

Query: 96  SYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFD--DSVLLPPGSILNHALQ 153
           +   +    +L  +   E       + L                   L       + A  
Sbjct: 92  AALRRFAPQRLALH---EPGTWALAEGLRDLANAAGTEFELWPASQFLFTREEFQSWAGA 148

Query: 154 MYKVYTPFRKALIQNLV-------------------------QADLRSLPVPAIRLTGPV 188
             +    F     +                            +A    LP P       +
Sbjct: 149 QRQHRMEFWYRHARRRTGILMEGDQPLGGRWNYDSENRHSFGKAGPGWLPEPLAFAPDAI 208

Query: 189 TPSNI----PRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDI--PAIQ-- 240
           T   +      F D+P       +P+    A   L  F  +++  +   +D   P     
Sbjct: 209 TREVLTVVEREFPDHPGSLAHFDWPVTMIEAEAALEDFIAQRLPSFGSFQDASWPGAVWL 268

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFY-P 299
             S+LS  +++G+L P++                 +        L WREF R +   Y P
Sbjct: 269 YHSRLSAAMNLGLLHPQRVIEAALGAHARAEASLAATEGFVRQILGWREFVRGIYWRYMP 328

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPII-DAAMRQLNTIGWMHNRLRMITA 358
                                 L Q +    T    + D   R L   G+ H+  R++  
Sbjct: 329 DYLEENALGAE---------QPLPQFYWSAQTDMACLRDVLQRTL-DYGYAHHIERLMIT 378

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDG 383
                 L V  +    ++++  +D 
Sbjct: 379 GLFALLLGVAPKAIHAWYLAIYVDA 403


>gi|170782456|ref|YP_001710789.1| hypothetical protein CMS_2102 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157025|emb|CAQ02198.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 487

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/412 (12%), Positives = 111/412 (26%), Gaps = 41/412 (9%)

Query: 40  VFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW------ 93
           + I +     +      ++H I + +    ++L  +    ++HQ  ++ + +E       
Sbjct: 23  LLIESRGLLARRPYHRAKAHLILSGIRHRARALGDR---VEFHQVDHYREVVEGRNDLEV 79

Query: 94  -------LDSYCLQQRVTKL----FYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLL 142
                  L     +     L    F   + E  E    +   + +       S   + +L
Sbjct: 80  IDPTSRGLRRLVAEIGAHVLPSRGFVTSEQEFAEWMAGRTSNRLVMEDFYRWSRARTGIL 139

Query: 143 PPGSIL---NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDY 199
             G +               P + A    L +            +   +          +
Sbjct: 140 MDGDVPVGGRWNYDHDNREPPPKGATSLGLPEPWWPEEDEIDQEVRADLDEWERKGLVRF 199

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLS 255
             +     F +  +     L  F   ++  +    D           S LS  +++GVL 
Sbjct: 200 VGEDGPRRFAVTPEEGRLALDDFVASRLNDFGPFEDASLAGDWTMAHSLLSATMNMGVLD 259

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIE 315
           P     R+  E        +S        + WR++  HL   +      +  +     + 
Sbjct: 260 PADVIERIVAEHAAGHAPIQSVEGIVRQIMGWRDYVWHLYWAFEDDYTSQNRLDAHRGVP 319

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
                      +        +   + ++ T GW H+  R++    L      D     ++
Sbjct: 320 TALQELDASGIEAA-----CLSHVVDKVRTHGWAHHIERLMILGNLALQRGYDPAAMNDW 374

Query: 376 FMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           F+   +DG                  +        P   G      G +I  
Sbjct: 375 FIDSFVDGTP---WVMPANVVGMALHADGGRMATKPYAGG------GAYIDR 417


>gi|77359940|ref|YP_339515.1| hypothetical protein PSHAa0994 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874851|emb|CAI86072.1| conserved protein of unknown function [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 517

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/404 (13%), Positives = 123/404 (30%), Gaps = 58/404 (14%)

Query: 64  SLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKL-------------- 106
           ++     +L+Q G   +    ++  N +D    L     Q +   +              
Sbjct: 56  AMENFATALNQAGFNVLHLTLNETCNDEDLPALLTRIAAQHQCNTIEYQYPDEYRLKTQL 115

Query: 107 --FYNR--------QYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK 156
             F N           E   +  +++  + ++ + I        +    +IL  + + + 
Sbjct: 116 AHFANTSPLTVSGVDSEHFLLPFEEIKHRFIKDKHITMEHFYRAMRKQFNILMDSNKPHG 175

Query: 157 VYTPFRKALIQNLVQADLRSLPVPAI---RLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQ 213
               F          ADL  +P P +    ++  +   N      +   A    +P   +
Sbjct: 176 GKWNFDSNNRNKFSAADLAQIPPPKLFNNDVSAIIARLNKHNVSYFGKAAEQLPWPTTRK 235

Query: 214 NALHILRKFCKEKVYYYVEQRDIPAIQG-------TSQLSPYLSIGVLSPRQCWNRLKEE 266
            A+  L  FC   + ++ + +D    Q         S+LS  L+  ++ P     R+  +
Sbjct: 236 QAISCLDYFCLYLLPHFGQFQDAMTEQSKHNSSLYHSRLSFALNAKLIHPLFVIKRVIAQ 295

Query: 267 FVDLLIK-PKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLL 323
           +         +    ++ + L WRE+ R +     P                      L 
Sbjct: 296 YEQRPNDISIAQVEGFVRQILGWREYVRAIYWINMPDYATKNQLKAKN---------TLP 346

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             +    T    +  A+ +  T  + H+  R++          ++    + +++   +D 
Sbjct: 347 PYFWHAKTKMNCMHHALCESLTTAYAHHIQRLMVIGNFCLLTAINPDDVDAWYLGVYIDA 406

Query: 384 DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
                    +W        +  F   +  I  K +   G +I  
Sbjct: 407 --------IEWVEMPNTRGMSQF-ADDGIIATKPYAASGNYINK 441


>gi|326403921|ref|YP_004284003.1| hypothetical protein ACMV_17740 [Acidiphilium multivorum AIU301]
 gi|325050783|dbj|BAJ81121.1| hypothetical protein ACMV_17740 [Acidiphilium multivorum AIU301]
          Length = 513

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 112/371 (30%), Gaps = 51/371 (13%)

Query: 52  GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFY 108
               ++   + A++    ++L  +G+  +Y    +          +   C   +   +  
Sbjct: 43  PHHPQKIALVLAAMRHFARALRARGVAVRYVALDDPANTGTLAGEVARACAALKPDAIIA 102

Query: 109 NRQYEINEVRRDKLLEKRLQHRVICKSFDDSV-------LLPPGSILNHALQMYKVYTPF 161
               E  E R  + +    +   I     D              +     L+M   Y   
Sbjct: 103 ---TEPGEYRVLEAMRGWAEQTGIPCEIRDDTRFLCSRADFAAWAGSKKQLRMEFFYREM 159

Query: 162 RKALI------------QNLVQADLRSLP----------VPAIRLTGPVTPSNIPRFFDY 199
           R+                N    + +SLP           P +  T  V      RF D+
Sbjct: 160 RRRHRILMEGDDPVGGKWNYDPENRKSLPAGLAPPEAKRFPPMAETREVLALVAARFADH 219

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLS 255
                   +P+  ++A      F   ++  + + +D  A        S +S  L++G+L 
Sbjct: 220 YGSLDAFDWPVTARDAESGFADFLARRLPGFGDWQDAMAADRDFMFHSLVSVPLNLGLLD 279

Query: 256 PRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEK 313
           P     R + E+ +    P +    ++ + L WREF R +     P              
Sbjct: 280 PLDLCRRAEAEY-EAGRAPLNAVEGFIRQILGWREFIRGIYWRHMPGYATLNALGA---- 334

Query: 314 IEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGE 373
                D  L   +  G T    +  A+ Q     + H+  R++          +     +
Sbjct: 335 -----DLPLPDFYWTGATDMRCMAQAIGQTLRRAYAHHIQRLMVTGNFALLAGIAPDAVD 389

Query: 374 EYFMSQLLDGD 384
            ++++   D  
Sbjct: 390 RWYLAVYADAY 400


>gi|320008018|gb|ADW02868.1| deoxyribodipyrimidine photolyase-related protein [Streptomyces
           flavogriseus ATCC 33331]
          Length = 503

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 11/189 (5%)

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVL----SPR 257
           +     FP   + AL  LR+F + ++  +    D      T+     LS  +      P 
Sbjct: 219 EDAPRRFPATRREALAGLRRFVEHRLATFGAYEDAMLAGDTTMSHSLLSSSLNLGLLDPA 278

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEW 316
           +C  R +  +    + P + A  ++ ++  WREF  H+  ++ +       +   E +  
Sbjct: 279 ECVERAEARWRSGDV-PLNSAEGFVRQIAGWREFVWHVYWYFGTRYRESNALRHHEPLP- 336

Query: 317 NKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYF 376
                         T    +   + Q+ T GW H+  R++    L      D R   ++F
Sbjct: 337 ----AWFTELSSDATDANCLSHVLDQVRTTGWTHHIPRLMVLGSLSLQRGWDPRAVTDWF 392

Query: 377 MSQLLDGDL 385
               +DG  
Sbjct: 393 HRSFVDGYD 401


>gi|146339616|ref|YP_001204664.1| hypothetical protein BRADO2608 [Bradyrhizobium sp. ORS278]
 gi|146192422|emb|CAL76427.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 508

 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/409 (16%), Positives = 125/409 (30%), Gaps = 58/409 (14%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
           +  F +A++      L  +G   +Y +  +  ++          Q   +       E  +
Sbjct: 53  RIAFFFAAMRHFHADLESRGRTVRYVRLDDPANTGALDSEIARHQAALQPQATIVLEPGD 112

Query: 117 VRRDKLLEK-------RLQHRVICKS-----FDDSVLLPPGSILNHALQMY--------- 155
            R  + L K       RL    +C +     F D    P       A++           
Sbjct: 113 FRVRESLRKLPQRPEIRLDRHFLCTADEFDAFTDRHPRPIMETFYRAMRRKTGLLLDESG 172

Query: 156 KVYTPFRKALIQNLVQADLRSLPVPAIRLTGP------VTPSNIPRFFDYPFQAIDPMFP 209
           +          +N         P+P  R   P      V      RF + P +      P
Sbjct: 173 RPIGGSWNFDAENRKGFGKSRPPIPVPRSYAPDAITQDVLKLVAARFSNSPGKLERFDLP 232

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKE 265
           +   +AL  L  F   ++  +   +D           S+LS  L++ +L+PR+      E
Sbjct: 233 VSRVDALTELSDFVSWRLSLFGTYQDAMLTGEPFLYHSRLSGALNLHMLNPREVVAAALE 292

Query: 266 EFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLL 323
                   P +    ++ ++I WREF R +     P                 + +  + 
Sbjct: 293 ----SRNAPLNALEGFVRQIIGWREFVRGIYWQRMPHYADENAL---------DANLPMP 339

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           + +  G T    +  A+       + H+  R++        L V       + MS   D 
Sbjct: 340 RFYWTGETDMRCLSQAIGHTIDHAYAHHIERLMVLGLFAMLLGVKPHDVHLWHMSMFHDA 399

Query: 384 ----DLASNNGGWQWAASTGNDSVPY-------FRIFNPTIQGKRFDPQ 421
                L +  G  Q        + PY        R+ +      R+DP+
Sbjct: 400 IDWVSLPNTLGMSQHGDGGVVGTKPYAASGHYIDRMSDHCRHC-RYDPK 447


>gi|188992416|ref|YP_001904426.1| hypothetical protein xccb100_3021 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734176|emb|CAP52384.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris]
          Length = 531

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 94/328 (28%), Gaps = 25/328 (7%)

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRLQHRVICK--SFDDSVLLPPGSILNH 150
           LD    Q    + F +R         ++  +      R   +   F   +      +L+H
Sbjct: 128 LDELLEQWCAAQPFASRMVGSEHFLTEREDVAGCFDARAAWRMEVFYRHMRRRHRILLDH 187

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS-NIPRFFDYPFQAIDPM-F 208
           A         F                          +  +        +     D + +
Sbjct: 188 AGAPEGGRWNFDHDNRAPWPGDPPAPADWRMTHDHAALWQTIEAAGVRSFGAPQADALPW 247

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLK 264
           P+    AL  L  F    + ++    D  + +      S LS  L++ +L P +   R +
Sbjct: 248 PLHRDEALQQLDDFITHALPHFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPAEVIARAE 307

Query: 265 EEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHL 322
             + D    P +    ++ + L WRE+ R +     P                W  D   
Sbjct: 308 AAWRD-GHAPLASVEGFIRQILGWREYVRGVYWSQMPGYAQSNQLGQHAPLPHWFWD--- 363

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
                 G  G   +  A+         H+  R++          +D +    +++   +D
Sbjct: 364 ------GQIGMRCLADAIGNSLNNAHAHHIQRLMVIGNFALLAGLDPQALHRWYLGVYID 417

Query: 383 GD----LASNNGGWQWAASTGNDSVPYF 406
                 L +  G  Q+A      S PY 
Sbjct: 418 AFEWVELPNTVGMSQFADGGFLGSKPYI 445


>gi|21230739|ref|NP_636656.1| hypothetical protein XCC1282 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769265|ref|YP_244027.1| hypothetical protein XC_2959 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21112333|gb|AAM40580.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574597|gb|AAY50007.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 529

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 94/328 (28%), Gaps = 25/328 (7%)

Query: 94  LDSYCLQQRVTKLFYNRQYEINEVRRDKL-LEKRLQHRVICK--SFDDSVLLPPGSILNH 150
           LD    Q    + F +R         ++  +      R   +   F   +      +L+H
Sbjct: 128 LDELLEQWCAAQPFASRMVGSEHFLTEREDVAGCFDARAAWRMEVFYRHMRRRHRILLDH 187

Query: 151 ALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS-NIPRFFDYPFQAIDPM-F 208
           A         F                          +  +        +     D + +
Sbjct: 188 AGAPEGGRWNFDHDNRAPWPGDPPAPADWRMTHDHAALWQTIEAAGVRSFGAPQADALPW 247

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLK 264
           P+    AL  L  F    + ++    D  + +      S LS  L++ +L P +   R +
Sbjct: 248 PLHRDEALQQLDDFITHALPHFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPAEVIARAE 307

Query: 265 EEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHL 322
             + D    P +    ++ + L WRE+ R +     P                W  D   
Sbjct: 308 AAWRD-GHAPLASVEGFIRQILGWREYVRGVYWSQMPGYAQSNQLGQHAPLPHWFWD--- 363

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLD 382
                 G  G   +  A+         H+  R++          +D +    +++   +D
Sbjct: 364 ------GQIGMRCLADAIGNSLNNAHAHHIQRLMVIGNFALLAGLDPQALHRWYLGVYID 417

Query: 383 GD----LASNNGGWQWAASTGNDSVPYF 406
                 L +  G  Q+A      S PY 
Sbjct: 418 AFEWVELPNTVGMSQFADGGFLGSKPYI 445


>gi|59712078|ref|YP_204854.1| hypothetical protein VF_1471 [Vibrio fischeri ES114]
 gi|59480179|gb|AAW85966.1| hypothetical protein VF_1471 [Vibrio fischeri ES114]
          Length = 523

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 70/461 (15%), Positives = 144/461 (31%), Gaps = 60/461 (13%)

Query: 31  HNSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDD 89
            ++D + I V IA  +Q   +     ++    +A++ Q   +L   G    +    +   
Sbjct: 24  QHTDPQTIYV-IAEMQQETAYVKHHVQKVCAFFAAMTQFATALESAGHRVMHLTLDDTK- 81

Query: 90  SIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDKLLEK-----------------RLQHRV 131
             E +D             + +Y+  +E R    LE+                  L    
Sbjct: 82  PFERIDDLLNHLIAEHHITHFEYQLPDEYRLRSTLERYCLSLSISSQVYESEHFFLSETQ 141

Query: 132 ICKSFDDSVLLPPG----------SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP- 180
           I K F  +                +IL    +       F  A    L  ++  S+P P 
Sbjct: 142 IEKEFKPNHHHRMEPFYRKMRKRFNILMEEGEPVAGKWNFDSANQNKLKPSEFDSVPTPL 201

Query: 181 --AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             A  +T  +                  ++P+  Q A  +L  FC+  +  + + +D   
Sbjct: 202 LFANDVTDILKRLERHNVSMIGQANNQLLWPVNRQQANELLVFFCRYCLPLFGKFQDAMT 261

Query: 239 IQ------------GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE- 284
            +              S+LS  L+  +LSP +  +    EF         +    ++ + 
Sbjct: 262 CKLDDMLTQKEWSLFHSRLSFALNAKILSPMKVIDAAITEFNQRQDAIDIAQIEGFVRQI 321

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WREF R +             +  +  +           +  G T    +  A++Q  
Sbjct: 322 LGWREFVRGIYWRNMPDYQNLNKLEASRSLP--------SWFWTGKTKMNCMHHAIQQSL 373

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGN 400
              + H+  R++T         +     +E+++   +D     ++ +  G  Q+A     
Sbjct: 374 DFAYAHHIQRLMTTGNFCLLTGIKPDEVDEWYLGIYIDAIEWVEMPNTRGMSQFADGGIV 433

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYIH 441
            S  Y    N   +   +     +    + E    P   ++
Sbjct: 434 ASKAYAASGNYVNKMSDYCSDCHYNVKQITEPKACPLNALY 474


>gi|293602572|ref|ZP_06685017.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
 gi|292819048|gb|EFF78084.1| deoxyribodipyrimidine photolyase [Achromobacter piechaudii ATCC
           43553]
          Length = 516

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 56/385 (14%), Positives = 118/385 (30%), Gaps = 50/385 (12%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYEI--- 114
           I+A++    + L + G   +Y    +     D  + L +        +L Y +  E    
Sbjct: 57  IFAAMRDFAQHLREAGHRVRYVAIDDPSNRQDITQNLAALMAHYGARELSYQQPDEWRVS 116

Query: 115 ---------------------NEVRRDKLLEKRLQHRVIC-KSFDDSVLLPPGSILNHAL 152
                                    RD++ E     R    ++F   +    G +++ + 
Sbjct: 117 ENLRTWGASQTFPVREEGSEHFYTSRDEVAEFFGPRRQWLMEAFYRHMRQRHGVLMDTSG 176

Query: 153 QMYKVYTPFRKALIQNLVQADLRSL---PVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
                   F     +             PV   R           + F  P QA +  +P
Sbjct: 177 APMGGRWNFDHDNREPWPGTPPLPPDARPVHDHRALWETVRQAGVQSFGNP-QAGEFHWP 235

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCWNRLKE 265
           +    AL  L  F +  +  +    D  +        SQLS  L+  +L P +   + + 
Sbjct: 236 LNRAQALAWLDHFIQCALPNFGAYEDAMSAGNPRLFHSQLSFALNTKMLHPDEVVRQAQA 295

Query: 266 EFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
            + +    P +    ++ + L WRE+ R +   +      +  +     +          
Sbjct: 296 AY-EAGHAPLAAVEGFIRQILGWREYVRGVYWAHMPGYETRNALGHARPLP--------A 346

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            +  G T    +  A+       + H+  R++          +D     ++++   +D  
Sbjct: 347 WFWTGQTTMRCMRDAIGNSLENAYAHHIQRLMVIGNFALLAGLDPGAVHQWYLGVYIDAF 406

Query: 385 ----LASNNGGWQWAASTGNDSVPY 405
               L +  G  Q+A      + PY
Sbjct: 407 EWVELPNTVGMSQFADGGLLGTKPY 431


>gi|110637464|ref|YP_677671.1| hypothetical protein CHU_1054 [Cytophaga hutchinsonii ATCC 33406]
 gi|110280145|gb|ABG58331.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 521

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 73/189 (38%), Gaps = 16/189 (8%)

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPR 257
            A + ++P+  + +L +L  F KE +  +   +D    +      S+LS  ++  +LSP 
Sbjct: 231 DARNFVWPVSRRQSLALLDFFVKECLPLFGTYQDAMVPEEWSLYHSRLSFSMNCKLLSPL 290

Query: 258 QCWNRLKEEFVDLLIK-PKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEKI 314
           +  NR  EE+     K   +    ++ ++I WRE+ R +     P            +  
Sbjct: 291 EVVNRAIEEWSMRKNKIAYNQLEGFVRQIIGWREYMRGMYWLKMPDFATLNYLENKNKLP 350

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
           +W            G T    +  A+ Q     + H+  R++          VD    ++
Sbjct: 351 DWYW---------TGKTKMNCLRNAINQSLHYAYAHHIQRLMITGNFALLAGVDPAEVDQ 401

Query: 375 YFMSQLLDG 383
           +++   +D 
Sbjct: 402 WYLGIYIDA 410


>gi|320102682|ref|YP_004178273.1| deoxyribodipyrimidine photolyase-like protein [Isosphaera pallida
           ATCC 43644]
 gi|319749964|gb|ADV61724.1| deoxyribodipyrimidine photolyase-related protein [Isosphaera
           pallida ATCC 43644]
          Length = 517

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/400 (13%), Positives = 122/400 (30%), Gaps = 69/400 (17%)

Query: 31  HNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDS 90
             +  +++ + + +    R+      +   I ++     ++   +GI  +      F+  
Sbjct: 8   RRAQGRLVVLLVESQAWLRRLPFHRWRQVLILSAGRHAVQAWKAEGIDARIVAADTFE-- 65

Query: 91  IEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSF---DDSVLLPPGS- 146
            + L +     + + +   R  E        L+++RL+ R  C      D   L+   + 
Sbjct: 66  -QGLTTAIRTIQPSLVLTARAAEYA----VGLVQQRLRQRGDCPVEIVPDTRFLVERFNP 120

Query: 147 ILNHALQMYKVYTPFRKALIQ----------------------NLVQADLRSLPVPAIRL 184
           I         V  PF +A+ +                      N  +   +  P    R 
Sbjct: 121 IPRPVAGKRYVMEPFYRAMRKAFGLLIESDGQPTGGAWNYDSHNRKRLPPQIKPPHPRRF 180

Query: 185 TGPVTPSNIPRFFDYPFQAIDPMFPIGE------QNALHILRKFCKEKVYYYVEQRDIPA 238
                   + R               G       Q A    + F  E++  +    D  +
Sbjct: 181 EPDRLTREVMREVAEGQHGQGVGRVDGFDLAVTPQQAQDAFQIFLDERLPNFGPFEDAMS 240

Query: 239 IQG----TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREF-YR 292
            +      S LS  +++G+L P +     ++ + +    P S    ++ ++I WRE+   
Sbjct: 241 QRHDTLFHSVLSAQMNLGLLDPLEMARAAEQRYREGRA-PLSSVEGFIRQIIGWREYILW 299

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI------ 346
                 P +     +        W  D                 DA M  L  +      
Sbjct: 300 QYRFQMPDLRQVNYWGGTGALPRWLWDG----------------DAPMNCLRQVTRRVID 343

Query: 347 -GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
            G+ H+  R++          +D  +  ++F++  +D   
Sbjct: 344 RGFSHHIERLMLVCNFCLLAGIDPGVVADWFLTFYVDSHD 383


>gi|325002489|ref|ZP_08123601.1| deoxyribodipyrimidine photolyase-related protein [Pseudonocardia
           sp. P1]
          Length = 496

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 64/206 (31%), Gaps = 13/206 (6%)

Query: 208 FPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLSPRQCWNRL 263
           F +    A+  LR F   ++  +    D           S LS  L++G L P +     
Sbjct: 217 FAVTHDEAVRALRHFVDHRLDTFGPYEDAVLARDWAMAHSLLSVPLNLGALHPLEAVRAA 276

Query: 264 KEEFVDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLL 323
           ++ + D   + +S        L WREF   L   +         +     +         
Sbjct: 277 EQAYHDGTARLESVEGFVRQVLGWREFVWQLYWRFGRGYTRSNHLRARTPLP-----DWW 331

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
                G      + +A+  +   GW H+  R++                 ++F +  +DG
Sbjct: 332 AGLDAGAVTASCLSSALSDVRDRGWTHHIPRLMILGNHAMQRGYRPDEVNDWFATAFVDG 391

Query: 384 D----LASNNGGWQWAASTGNDSVPY 405
                  +  G  Q A      + PY
Sbjct: 392 FAWVMPPNVIGMSQHADGGRMTTKPY 417


>gi|209695281|ref|YP_002263210.1| hypothetical protein VSAL_I1806 [Aliivibrio salmonicida LFI1238]
 gi|208009233|emb|CAQ79491.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 523

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 103/317 (32%), Gaps = 31/317 (9%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQA 203
           IL    +       F  A    L + +  S+P P   A  ++  +   +           
Sbjct: 167 ILMEEGEPVAGKWNFDNANQNKLKRTEFDSVPTPLLFANDVSDIIERLDRHNIETIGQAD 226

Query: 204 IDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ------------GTSQLSPYLSI 251
              ++P+  Q A  +L  FC+  +  + + +D    +              S+LS  L+ 
Sbjct: 227 KQLLWPVNRQKASELLVFFCRYCLPLFGQFQDAMTCKLDDMLTQKQWSLFHSRLSFALNA 286

Query: 252 GVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFI 308
            +LSP+Q  +    EF         +    ++ + L WREF R +     P+        
Sbjct: 287 KILSPKQVIDAAIMEFNQRPDDINIAQIEGFVRQILGWREFVRGIYWRNMPTYQSLNKLN 346

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                  W            G T    +  A++Q     + H+  R++          + 
Sbjct: 347 ASLSLPSWFW---------TGNTKMNCMHHAIKQSLDFAYAHHIQRLMITGNFCLLTGIK 397

Query: 369 WRIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
               +E+++   +D     ++ +  G  Q+A      S  Y    N   +   + P   +
Sbjct: 398 PDEVDEWYLGIYIDAIEWVEMPNTRGMSQFADGGIVASKAYAASGNYVNKMSDYCPDCHY 457

Query: 425 IRHWLPELNNVPTQYIH 441
               + E    P   ++
Sbjct: 458 NVKQVSEETACPLNALY 474


>gi|326387003|ref|ZP_08208613.1| deoxyribodipyrimidine photolyase-related protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208184|gb|EGD58991.1| deoxyribodipyrimidine photolyase-related protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 540

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 70/196 (35%), Gaps = 16/196 (8%)

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLS 250
           RF D+        +P+  Q+A  +L  F +  + ++   +D           S L+P ++
Sbjct: 223 RFGDHFGSLDAFGWPVTRQDAETLLDHFIERCLPHFGHWQDAMMAGHDTMFHSLLAPAIN 282

Query: 251 IGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFI 308
           +G+L P     R +  +      P +    ++ ++I WRE+ R +     P +       
Sbjct: 283 LGLLDPLAVCRRAEAAYRSGQA-PIAAVEGFIRQIIGWREYVRGMYWLDMPGLAGANALD 341

Query: 309 PWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVD 368
                        L + W  G T    +   +R      + H+  R++          + 
Sbjct: 342 AQR---------PLPEFWWTGQTPMRCLAETVRSTRENAYAHHIQRLMVMGNFALLAGLR 392

Query: 369 WRIGEEYFMSQLLDGD 384
            +   ++F++   D  
Sbjct: 393 PQEVADWFLAVYADAF 408


>gi|149201959|ref|ZP_01878933.1| deoxyribodipyrimidine photolyase-related protein [Roseovarius sp.
           TM1035]
 gi|149145007|gb|EDM33036.1| deoxyribodipyrimidine photolyase-related protein [Roseovarius sp.
           TM1035]
          Length = 509

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 66/438 (15%), Positives = 136/438 (31%), Gaps = 50/438 (11%)

Query: 22  DNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQY 81
           D  AL A     D  V+A  +     +  H    ++   I +++    ++L+ +G    Y
Sbjct: 16  DLSALRAGDKARDVVVMA-EVRDEGSYVPHH--PKKIALILSAMRHFAEALTAEGWQVAY 72

Query: 82  HQCSNFDDSIEWLDSYCL---QQRVTKLFYNR--QYEINEVRRDK--LLEKRLQHRVIC- 133
            +  +   +   +        +   +++   +  ++ + E   D    + +    R +C 
Sbjct: 73  TRLDDPAATPSIVGELMRRAEEFGASEVIATQPGEWRLIEALSDAPLTVRQLPDDRFVCS 132

Query: 134 -KSFDD--------SVLLPPGSILNHALQMYKVYTPFRKAL---IQNLVQADLRSLPVPA 181
            + FD          +      +      M +   P          N  +A    L    
Sbjct: 133 LEEFDRWAEGRKELRMEYFYREMRRKTGLMMEGDQPAGGKWNFDHDNRKRAQADLLREGP 192

Query: 182 IRLTGPVTPSNIPRF----FDYPFQAIDPMFPI-GEQNALHILRKFCKEKVYYYVEQRD- 235
           +R         +       F   F A+ P +       A      F +  +  + + +D 
Sbjct: 193 LRFEPDAITQEVLDLVEARFGTHFGALRPFWFGVTRDAAAQAFDHFARHLLPGFGDTQDA 252

Query: 236 ---IPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELIWREFYR 292
                A    S +S Y++IG+L P     R+ EE+ +  +   +        + WRE+ R
Sbjct: 253 MLEGDAFLHHSVISMYMNIGLLDPVDICARVVEEWKEGRVPINAAEGYIRQVIGWREYMR 312

Query: 293 HLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNR 352
            L        + +  +    K+           +    T    +  A+       + H+ 
Sbjct: 313 GLYFREGPDYVTRNALGHKRKLP--------AMFWGAKTRMNCVAHAVETTAKEAYAHHI 364

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGD---LASNNGGW-QWAASTGNDSVPYFRI 408
            R++          +D     E++++   D      A N  G  Q+A      S PY   
Sbjct: 365 QRLMVTGNFALLAGIDPGQVHEWYLAVYADAFEWVEAPNVIGMSQFADGGIIASKPY--- 421

Query: 409 FNPTIQGKRFDPQGTFIR 426
                 G   D    + R
Sbjct: 422 ---VSSGNYIDKMSDYCR 436


>gi|89075136|ref|ZP_01161572.1| hypothetical protein SKA34_09948 [Photobacterium sp. SKA34]
 gi|89049090|gb|EAR54656.1| hypothetical protein SKA34_09948 [Photobacterium sp. SKA34]
          Length = 518

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 108/365 (29%), Gaps = 54/365 (14%)

Query: 61  IYASLLQVQKSLSQKG---IVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEV 117
            +A++     +L Q G   +         + D  + + S C Q       Y +    +E 
Sbjct: 55  FFAAMENFAIALQQSGHEVLHLTLDDTHTYHDLPDLIVSLCQQYHCQAFEYQQ---PDEY 111

Query: 118 RRDKLLEKRLQHRVICKSFD-----------DSVLLP---------------PGSILNHA 151
           R  + L       V  ++ D           D  + P                  +L   
Sbjct: 112 RLSQQLAALKIPDVAVQASDSDHFLLTLAELDQYITPNKHHRMEHFYRAMRKRFDVLMVE 171

Query: 152 LQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
                    +  A    L   D+  +P P   +  ++                     ++
Sbjct: 172 GNPQGGKWNYDGANRNKLKAIDIEKIPQPLMFSNDVSAISKRLEKHNINTIGQSCEQLLW 231

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-------TSQLSPYLSIGVLSPRQCWN 261
           P   + +  +L  FC++ +  +   +D    +         S+LS  L+  +L P Q   
Sbjct: 232 PTNRKQSQALLSYFCRDLLPLFGRFQDAMTTKSESAWSLYHSRLSFALNAKMLHPMQVIQ 291

Query: 262 RLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHL-MAFYPSVCMGKPFIPWTEKIEWNK 318
              + +     K   +    ++ + L WREF R +     P                   
Sbjct: 292 AAIDAYSQPDSKIDIAQVEGFVRQILGWREFIRAIYWVNMPHYGKENTL---------EA 342

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           +S L   +    T    +  A++Q     + H+  R++          +     E++++ 
Sbjct: 343 NSSLPDFFWDAKTNMQCMHHAIKQSLDYSYAHHIQRLMVTGNFCLLTGIAPSEVEQWYLG 402

Query: 379 QLLDG 383
             +D 
Sbjct: 403 IYIDA 407


>gi|221134511|ref|ZP_03560816.1| deoxyribodipyrimidine photolyase-related protein [Glaciecola sp.
           HTCC2999]
          Length = 524

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 71/202 (35%), Gaps = 21/202 (10%)

Query: 195 RFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLS 250
            F D+     D  + +  + A  +L +F  E++  + + +D  A        S +S YL+
Sbjct: 219 EFNDHFGDFADFHYGVTREQAFIVLDEFIAERLVNFGQFQDAMAQDEPWLFHSHISFYLN 278

Query: 251 IGVLSPRQCWNRLKEEFVDLLIK------PKSGAFSWLNELI-WREFYRHL-MAFYPSVC 302
            G+L+  +   R+++ +   L        P +    ++ ++I WRE+ R L     P   
Sbjct: 279 SGLLTAHEIVARIEDVYYTHLHDDTLPAIPLNSVEGFIRQVIGWREYVRGLYWYKMPEYV 338

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
                              L   +  G T    +   ++      + H+  R++      
Sbjct: 339 EHNHLNAQR---------ALPDFFWTGKTKMNCLSQCIKDTKENAYAHHIQRLMVLGNFA 389

Query: 363 KDLLVDWRIGEEYFMSQLLDGD 384
               +  +   E+++    D  
Sbjct: 390 LIAGLSPKAVNEWYLIVYGDAY 411


>gi|209963926|ref|YP_002296841.1| deoxyribodipyrimidine photolyase-like protein [Rhodospirillum
           centenum SW]
 gi|209957392|gb|ACI98028.1| deoxyribodipyrimidine photolyase-like protein [Rhodospirillum
           centenum SW]
          Length = 539

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 83/251 (33%), Gaps = 18/251 (7%)

Query: 143 PPGSILNHALQMYKVYTPFRKALIQNLVQ--ADLRSLPVPAIRLTGPVTPSNIPRFFDYP 200
             G +L    +       +     + L +         V    LT  V      RF +  
Sbjct: 162 ETGLLLTPDGEPEGGAWNYDTDNRKPLPRGLEPPPRFDVRPDALTAEVLALVRARFAERF 221

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQL----SPYLSIGVLSP 256
            +     F +    A      F +  + ++ + +D  A    +      SPYL+IG+L P
Sbjct: 222 GELEPFRFAVTAAGAEAAFEHFVRHALRHFGDYQDAMAAGQDTLFHAVISPYLNIGLLDP 281

Query: 257 RQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY-PSVCMGKPFIPWTEKI 314
           R    R++ E+    + P + A  ++ + L WRE+ R L     P            +  
Sbjct: 282 RAVCRRVEAEYRAGRV-PLNAAEGFIRQILGWREYVRGLYWLRMPDYAETNALGAVRD-- 338

Query: 315 EWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEE 374
                  L   +  G T    +   + Q     + H+  R++          +  R  EE
Sbjct: 339 -------LPPFFWTGETPMTCLREVIGQTRREAYAHHIQRLMVTGNFALLAGLAPRQVEE 391

Query: 375 YFMSQLLDGDL 385
           ++++   D   
Sbjct: 392 WYLAVYADAFD 402


>gi|56461089|ref|YP_156370.1| protein related to deoxyribodipyrimidine photolyase [Idiomarina
           loihiensis L2TR]
 gi|56180099|gb|AAV82821.1| Protein related to deoxyribodipyrimidine photolyase [Idiomarina
           loihiensis L2TR]
          Length = 518

 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 57/404 (14%), Positives = 124/404 (30%), Gaps = 59/404 (14%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQ 111
            ++    +A++     +L+  G    Y +  +        + L     +  VT L     
Sbjct: 46  RQKVLAFFAAMRAFGNALNTSGHQVNYIKLDDDTNEQSLTQNLQQLMKKYEVTTL---EC 102

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPG-------------------------- 145
            + +E R D  L+       I  S+ D+     G                          
Sbjct: 103 QQPDEYRLDHQLKSWAGANNIHLSWFDTEHFLTGRNSLKEYFPNSENYLMETFYRRVRKQ 162

Query: 146 -SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAI 204
             IL    +       + K   + +  +    LP+        +             QA 
Sbjct: 163 YDILMDGGRPTGGRWNYDKENQKKVPASHDVELPLIFSNDVSDIDELLRSSEIKTMGQAN 222

Query: 205 DP--MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----------GTSQLSPYLSIG 252
               ++P+  + +  +L  FC+  +  +   +D  A +            S+LS  L+  
Sbjct: 223 AAQLIWPVNRKQSKQLLEHFCQFGLPDFGRYQDTMATENNVGKAHWSLYHSRLSFSLNTK 282

Query: 253 VLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPW 310
           +L P +  N   + +         +    +  ++I WREF R +   +         +  
Sbjct: 283 MLHPLEVVNAAIDAWSKNKDTISLAQIEGFCRQIIGWREFVRGIYWAHMPDYKNLNALNH 342

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
           T  +         + +    T    +  A++Q     + H+  R++          V   
Sbjct: 343 TRPLP--------EFYWTANTKMACLHYAVKQSLDYAYAHHIQRLMVTGNFALLASVSPD 394

Query: 371 IGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFN 410
             +++++   +D     +L +  G  Q+A      + PY    N
Sbjct: 395 ALDDWYLGIYIDAIEWVELPNTCGMSQYADGGLIATKPYIASAN 438


>gi|291448405|ref|ZP_06587795.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351352|gb|EFE78256.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 540

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 13/171 (7%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP 299
             S LS  L++G+L+P +C +R +E +      P +    ++ ++  WRE+   L   + 
Sbjct: 296 SHSLLSVPLNLGLLAPAECVDRAEEAWR-AGEAPLNSVEGFVRQIAGWREYVWQLYWHFG 354

Query: 300 SVCMGKPFIPWTEKIE-WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                +  +  T  +  W  D                +   + Q+   GW H+  R++  
Sbjct: 355 EEYRDRNALRHTALLPGWFLDLDADAVTAH------CLSTVLAQVRDTGWTHHIPRLMVL 408

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
                    D     ++F    +DG     L +  G  Q+A      + PY
Sbjct: 409 GSRALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 459


>gi|294888807|ref|XP_002772597.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239876941|gb|EER04413.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 198

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 52/182 (28%), Gaps = 14/182 (7%)

Query: 5   TAMSVHLVWLRNDLRITDNKALYAA---CHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           T+    + W+  ++R  DN AL  A      S   ++ V+          G   RQ  F 
Sbjct: 22  TSPGPVIYWMSREIRSRDNWALIHAQNVALRSKRPLLVVYNLAVGYL---GGGLRQHAFK 78

Query: 62  YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDK 121
              L  V  +LSQ  I F       F      L     +     +     +    + ++ 
Sbjct: 79  VGGLKVVAANLSQLNIPFAIEASPKFPAF---LADITERVGCKYVVT--DFTPLRLNKEW 133

Query: 122 LL---EKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           +    +   +  +  +  D   ++P     +   +      P              R   
Sbjct: 134 VAAFTKHAKRLDIRFELVDAHNVVPCWVTSDKMERAAVTIRPKLWHHFDEFCTKYPRLKR 193

Query: 179 VP 180
            P
Sbjct: 194 HP 195


>gi|114797588|ref|YP_760139.1| deoxyribodipyrimidine photolyase-like protein [Hyphomonas neptunium
           ATCC 15444]
 gi|114737762|gb|ABI75887.1| deoxyribodipyrimidine photolyase homolog [Hyphomonas neptunium ATCC
           15444]
          Length = 512

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 127/425 (29%), Gaps = 63/425 (14%)

Query: 26  LYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCS 85
           L  A    D  +IA  +     +  H    ++  F++A++    + L   G   +Y    
Sbjct: 19  LRDASKKDDVILIA-EVMEEATYVPHHK--KKIAFLFAAMRHFAQELKSAGYTVRYAALD 75

Query: 86  NFDDS----IEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVL 141
           +  +      E   +      +T++   +  E   ++  +L    L   V  +  D   +
Sbjct: 76  DPLNQGSLRAETARALEDHPSLTQVIATKPGEWRLLQDMELWADILPVPVDLRE-DTRFI 134

Query: 142 LPP-------------------GSILNHALQMYKVYTPFRKAL---------IQNLVQAD 173
           +P                      +      +     P              +   +   
Sbjct: 135 VPLKAFNAWAEGRKQLRMEYFYRDVRRQTGLLMDGDQPEGGQWNYDSENRKRLPKSMTTP 194

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
            R LP P   LT  V      RF D        +F      A      F  E +  + + 
Sbjct: 195 QRFLPKPDA-LTQDVIALVAERFPDNFGDLDPWVFATTRAGAEEARDHFLSEILPGFGDW 253

Query: 234 RDIPAI----QGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WR 288
           +D  A        S LS Y++ G+L P     R + E+      P +    ++ ++I WR
Sbjct: 254 QDAMARGEPWMWHSLLSVYINCGLLDPLDVCRRAEAEW-KAGRAPLNAVEGFIRQIIGWR 312

Query: 289 EF----YRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           E+    Y   M  Y  +       P  +   W            G T    +  A+ Q  
Sbjct: 313 EYVRGIYWLKMPAYAELNTLNAHRPLPDFY-W-----------TGETDMRCMAEAIGQTR 360

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGN 400
              + H+  R++          +      E+++    D      L + +G    A     
Sbjct: 361 RHAYAHHIQRLMITGNFALLAGLSPAQVNEWYLLVYADAYEWVELPNTHGMALHADGGLM 420

Query: 401 DSVPY 405
            S PY
Sbjct: 421 ASKPY 425


>gi|170728256|ref|YP_001762282.1| deoxyribodipyrimidine photolyase-like protein [Shewanella woodyi
           ATCC 51908]
 gi|169813603|gb|ACA88187.1| deoxyribodipyrimidine photolyase-related protein [Shewanella woodyi
           ATCC 51908]
          Length = 531

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 90/309 (29%), Gaps = 40/309 (12%)

Query: 141 LLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---AIRLTGPVTPSNIPRFF 197
           L    ++L            F     Q +   D   +P P   A  ++  +         
Sbjct: 165 LRARFNLLMEQGSPLGGKWNFDADNRQKIKVTDFYDVPTPLLFANDVSTILQRVERHNVA 224

Query: 198 DYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----------------G 241
                  + ++PI    A  +L  FC+  +  + + +D    +                 
Sbjct: 225 TIGVVQANLLWPITRHQANKLLEHFCRYCLVRFGQFQDAMTAKLDLKLGALSEDRQWTLY 284

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRH-LMAFY 298
            S+LS  L+  +LSP+   +     +     +   +    ++ + L WREF R    A  
Sbjct: 285 HSRLSFALNAKLLSPKHVIDTAITAYQAAKGEITLAQIEGFVRQILGWREFVRGVYWANM 344

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P                W            G T    +  A++Q     + H+  R++  
Sbjct: 345 PEYAELNRLSATRALPTWFW---------SGDTKMNCLHHAIKQSLEYSYAHHIQRLMVT 395

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRF 418
                   V     +++++   +D          +W        +  F      +  K +
Sbjct: 396 GNFCLISGVAPDQVDDWYLGVYIDA--------IEWVEMPNTRGMSQF-ADGGIVGSKAY 446

Query: 419 DPQGTFIRH 427
              G +I  
Sbjct: 447 AASGNYINK 455


>gi|21242086|ref|NP_641668.1| hypothetical protein XAC1333 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21107493|gb|AAM36204.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 525

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 118/395 (29%), Gaps = 56/395 (14%)

Query: 55  ARQSHFIYASLLQVQKSLSQKGIVFQYHQ---CSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
           A++   I+A++      L + G   +Y      SN       L++     R   L Y   
Sbjct: 60  AQKVLAIFAAMRAFAAGLRRAGHRVRYVTIDNASNRQSIPHNLEALMAHYRAGDLEYQ-- 117

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDD--SVLLPPGSI--LNHALQMYKVYTPFRKALIQ 167
              +E R D+ L+     +       D    L     +         +++   +R+   Q
Sbjct: 118 -APDEWRLDEALQHWSAAQPFATRMVDSEHFLTARNEVAACFPTGSPWRMEVFYRRMRRQ 176

Query: 168 NLVQADLRSLP----------VPAIRLTGPVTPSNIPRFFDYPF---------------- 201
           + +  D    P            A     P  P +     D+                  
Sbjct: 177 HRILLDAAGEPEGGRWNFDHDNRAPWPGDPPAPQDWRTTHDHSAVWHTIEAAGVRSFGAP 236

Query: 202 QAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPR 257
            A    +P+    AL  L  F    +  +    D  + +      S LS  L++ +L PR
Sbjct: 237 NAQALPWPLDRDEALQHLEAFIAHALPDFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPR 296

Query: 258 QCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIE 315
           +   R +  +      P +    ++ + L WRE+ R +     P                
Sbjct: 297 EAIARAEAAWRQ-GHAPLAAVEGFIRQILGWREYVRGVYWSQMPGYAESNHLDQHAPLPH 355

Query: 316 WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEY 375
           W  D         G  G   +  A+         H+  R++          +D +    +
Sbjct: 356 WFWD---------GQIGMRCLADAVGNSLANAHAHHIQRLMVIGNFALLAGLDPQALHRW 406

Query: 376 FMSQLLDGD----LASNNGGWQWAASTGNDSVPYF 406
           ++   +D      L +  G  Q+A      S PY 
Sbjct: 407 YLGVYIDAFEWVELPNTVGMSQFADGGLLGSKPYI 441


>gi|239944944|ref|ZP_04696881.1| hypothetical protein SrosN15_28410 [Streptomyces roseosporus NRRL
           15998]
 gi|239991408|ref|ZP_04712072.1| hypothetical protein SrosN1_29162 [Streptomyces roseosporus NRRL
           11379]
          Length = 508

 Score = 47.7 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 13/171 (7%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP 299
             S LS  L++G+L+P +C +R +E +      P +    ++ ++  WRE+   L   + 
Sbjct: 264 SHSLLSVPLNLGLLAPAECVDRAEEAWR-AGEAPLNSVEGFVRQIAGWREYVWQLYWHFG 322

Query: 300 SVCMGKPFIPWTEKIE-WNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
                +  +  T  +  W  D                +   + Q+   GW H+  R++  
Sbjct: 323 EEYRDRNALRHTALLPGWFLDLDADAVTAH------CLSTVLAQVRDTGWTHHIPRLMVL 376

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
                    D     ++F    +DG     L +  G  Q+A      + PY
Sbjct: 377 GSRALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 427


>gi|295837931|ref|ZP_06824864.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
 gi|295826748|gb|EDY46118.2| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
          Length = 504

 Score = 47.7 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 11/170 (6%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYP 299
             S LS  L++G+L P +C    +  + +    P +    ++ ++  WRE+   L   + 
Sbjct: 260 SHSLLSAPLNLGLLDPAECAELAERAYRE-GEAPLNSVEGFVRQIAGWREYVWQLYWHFG 318

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
                   +  T  +          +   G      +   + Q+   GW H+  R++   
Sbjct: 319 EDYRSLNALRHTAPLP-----EWFLSLDAGAVTANCLSTVLAQVRDTGWTHHIPRLMILG 373

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
                   D     ++F    +DG     L +  G  Q+A      + PY
Sbjct: 374 SRALQDGWDPAAVTDWFHRCFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 423


>gi|332532407|ref|ZP_08408285.1| deoxyribodipyrimidine photolyase-like protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038050|gb|EGI74497.1| deoxyribodipyrimidine photolyase-like protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 518

 Score = 47.7 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 93/295 (31%), Gaps = 32/295 (10%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTG-PVTPSNIPRFFDYPFQAID 205
           IL    +       F         + DL ++P P +  T      S + +     F  ID
Sbjct: 166 ILVDDTKPTGGKWNFDSNNRNKFSKNDLANIPEPKLFNTDVSSIISRLNKHKVAYFGQID 225

Query: 206 PM---FPIGEQNALHILRKFCKE---KVYYYVEQRDIPAIQGTS----QLSPYLSIGVLS 255
                +P   + A+  L  FC+       ++ +     +   TS    +LS  L+  +L 
Sbjct: 226 EHSLEWPTTRKQAIESLEYFCEHLLSCFGHFQDAMTDQSKNNTSLYHSRLSFALNAKILH 285

Query: 256 PRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTE 312
           P     R+  E+     +   S    +  + L WRE+ R +     P   +         
Sbjct: 286 PLYVIKRVIREYEQRPSEISLSQVEGFTRQILGWREYVRAIYWINMPDYAVKNQLQAKNT 345

Query: 313 KIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIG 372
              +  +S          T    +  +++Q     + H+  R++          ++    
Sbjct: 346 LPSYFWNSS---------TKMNCLSHSLKQSLETAYAHHIQRLMVIGNFCMLTGINPDDV 396

Query: 373 EEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
           + +++   +D          +W        +  F   +  I  K +   G +I  
Sbjct: 397 DNWYLGVYIDA--------IEWVEMPNTRGMSQF-ADDGIIATKPYAASGNYINK 442


>gi|297521221|ref|ZP_06939607.1| deoxyribodipyrimidine photolyase [Escherichia coli OP50]
          Length = 28

 Score = 47.7 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 18/27 (66%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNS 33
          M  HLVW R DLR+ DN AL  AC +S
Sbjct: 1  MITHLVWFRQDLRLHDNLALAGACRHS 27


>gi|16124899|ref|NP_419463.1| hypothetical protein CC_0646 [Caulobacter crescentus CB15]
 gi|221233620|ref|YP_002516056.1| hypothetical protein CCNA_00683 [Caulobacter crescentus NA1000]
 gi|13421859|gb|AAK22631.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220962792|gb|ACL94148.1| hypothetical protein CCNA_00683 [Caulobacter crescentus NA1000]
          Length = 509

 Score = 47.3 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 16/218 (7%)

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
               L +P    T  V       F D+  +     +P     A  IL  F  + +  + +
Sbjct: 191 PPERLRIPPNPTTQTVLEQVSRGFDDHFGEVEGFGWPTNPDEATAILDHFIADMLPSFGD 250

Query: 233 QRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-W 287
            +D  + +      S +SP L+IG+L P     R +  + +    P +    ++ ++I W
Sbjct: 251 WQDAMSWRRPFLWHSLISPALNIGLLDPLDICRRAEAAWREGRA-PLNAVEGFIRQIIGW 309

Query: 288 REFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           REF R +     P            +         L   +  G T    +   +R  +  
Sbjct: 310 REFVRGIYWLKMPEYAQRNALDAQGK---------LPGFYWTGQTDMACVADTVRAAHDH 360

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            + H+  R++    L   L V     ++++M    D  
Sbjct: 361 AYAHHIQRLMVTGNLAMLLGVHPDAVDDWYMVVFADAY 398


>gi|150026081|ref|YP_001296907.1| hypothetical protein FP2042 [Flavobacterium psychrophilum JIP02/86]
 gi|149772622|emb|CAL44105.1| Protein of unknown function related to deoxyribodipyrimidine
           photolyase [Flavobacterium psychrophilum JIP02/86]
          Length = 520

 Score = 47.3 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 55/404 (13%), Positives = 131/404 (32%), Gaps = 61/404 (15%)

Query: 42  IATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ 101
           I +   +  H I  ++    ++++      L +K     Y   ++  ++++  D    Q 
Sbjct: 43  IRSETDYATHHI--QKIAGFFSAMRNFASELKEKKHNSIYFHLND-TNNLQAFDKNLQQL 99

Query: 102 RVTKLFYNRQYE-INEVRRDKLLEKRLQHRVICKSFDD---------------------- 138
              + + + +Y+  +E R D+LL+   Q   I  S  D                      
Sbjct: 100 INKEHYTHFEYQLPDEYRLDELLKNFCQTLSISTSVADSEHFMSTREELGNFFDGKKTFL 159

Query: 139 -----SVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP----VPAIRLTGPVT 189
                 ++    ++L    +       +     + L +    + P         +   + 
Sbjct: 160 MESFYHMMRKKHNVLMQGNKPLTGKWNYDGENRKKLPKNHKPTSPLGFNNDVSEIVAEIH 219

Query: 190 PSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQL 245
            SNI    +   +    ++P     +  +L  F  E +  +   +D           S++
Sbjct: 220 KSNIKTIGNIDAKNF--VWPTTRTQSSKLLDFFVTECLTLFGSYQDAMTPNQWSLYHSRI 277

Query: 246 SPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELI-WREFYRHLMAF-YPSVC 302
           S  +++ ++SP +  NR  +E+     +   +    ++ ++I WRE+ R +     P   
Sbjct: 278 SFSMNVKLISPLEVINRAIQEWESRPDQIAYNQLEGFVRQIIGWREYMRGIYWNKMPQYA 337

Query: 303 MGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLV 362
               F    +  +W            G T    +   + Q     + H+  R++      
Sbjct: 338 TMNYFENQNKLPQWFW---------TGKTKMNCLKDTINQSLNFAYAHHIQRLMITGNFA 388

Query: 363 KDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYF 406
               V+    + +++   +D          QW   T    +  F
Sbjct: 389 LLAGVNPDEVDAWYLGIYIDA--------IQWVEITNTRGMSQF 424


>gi|325915837|ref|ZP_08178136.1| deoxyribodipyrimidine photolyase-related protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325537958|gb|EGD09655.1| deoxyribodipyrimidine photolyase-related protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 525

 Score = 47.3 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 79/272 (29%), Gaps = 22/272 (8%)

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPS-NIPRFFDYPFQAID 205
           +L+ + Q       F                   A    G +  S        +      
Sbjct: 180 LLDASGQPEGGRWNFDHDNRAPWPGDPPAPQEWRAAHDHGALWRSIEDAGVRSFGMPNAQ 239

Query: 206 PM-FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG----TSQLSPYLSIGVLSPRQCW 260
            + +P+    AL  L  F    +  +    D  + +      S LS  L++ +L P +  
Sbjct: 240 ALPWPLDRDEALQHLDAFIATALPDFGRYEDAMSTRSPRLFHSLLSFALNVKMLHPAEVI 299

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNK 318
            R +  +      P +    ++ + L WRE+ R +     P                W  
Sbjct: 300 TRAEAAWRQ-GHAPLASVEGFIRQILGWREYVRGVYWSQMPGYAQSNRLDQHAPLPHWFW 358

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D         G  G   +  A+         H+  R++          +D +    +++ 
Sbjct: 359 D---------GQIGMRCLADAVGNSLANAHAHHIQRLMVIGNFALLAGLDPQALHRWYLG 409

Query: 379 QLLDGD----LASNNGGWQWAASTGNDSVPYF 406
             +D      L +  G  Q+A      S PY 
Sbjct: 410 VYIDAFEWVELPNTVGMSQFADGGLLGSKPYI 441


>gi|253761750|ref|XP_002489250.1| hypothetical protein SORBIDRAFT_0012s014620 [Sorghum bicolor]
 gi|241947110|gb|EES20255.1| hypothetical protein SORBIDRAFT_0012s014620 [Sorghum bicolor]
          Length = 1445

 Score = 47.3 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 76/255 (29%), Gaps = 33/255 (12%)

Query: 8   SVHLVWLRNDLRITDNK-----ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
              + W+  D R+ DN      A  AA     A +   F   P  +   G   RQ  F+ 
Sbjct: 26  GPVVYWMLRDQRLADNWALLHAAELAAASAPAAPLAIAFTLFPRPF-LLGAHLRQLGFLL 84

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDK 121
             L ++      +G+ F   +    +     + +   +   + L  +           D 
Sbjct: 85  RGLRRLAADAHARGLPFFLLEGGPAE-----VPALVRRLGASALVTDFSPLRPVREAFDA 139

Query: 122 LLEKRLQHRV--ICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPV 179
           ++ + L+          D   ++P   +    L+       FR  + + + +  +    +
Sbjct: 140 VVHELLRDAADMAVHQVDAHNVVPVW-VATGKLEYSA--KTFRSKVSKVMDEYLVEYPEL 196

Query: 180 PAIRLTGPVTPSN------IPRFFDYPFQAIDPMF-PIGEQNALHILRKFCKE------- 225
           P         P +      I   F       +  +   GE  A+  +  F +E       
Sbjct: 197 PGWTPWCMEQPKDVDWDALINSIFSEAENVPEIDWCEPGEAAAMESVDAFLEELIIRREL 256

Query: 226 --KVYYYVEQRDIPA 238
                YY    D  A
Sbjct: 257 ADNFCYYQPNYDSLA 271


>gi|323498938|ref|ZP_08103921.1| deoxyribodipyrimidine photolyase-related protein [Vibrio
           sinaloensis DSM 21326]
 gi|323316050|gb|EGA69078.1| deoxyribodipyrimidine photolyase-related protein [Vibrio
           sinaloensis DSM 21326]
          Length = 515

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 124/394 (31%), Gaps = 54/394 (13%)

Query: 32  NSDAKVIAVFIATPEQWRQH-GISARQSHFIYASLLQVQKSLSQKGIV---FQYHQCSNF 87
           + + +V+ V IA   Q   +    A++    +A++      L   G         + S+F
Sbjct: 23  HCNDEVLYV-IAELHQEALYVKHHAQKQCAFFAAMESFANELRTNGHQVEYLDLDKTSDF 81

Query: 88  DDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDD-SVLLPPGS 146
                 + +   Q  +T   Y R    +E R  + L++    RV     D    L P   
Sbjct: 82  ASLDTLICALVEQHSITTFEYQR---PDEYRLAQQLQQLDLDRVQITQIDSEHFLFPFDE 138

Query: 147 ILNHALQMYKV-YTPFRKALIQNL------------------------VQADLRSLPVP- 180
           I +   Q   +    F + + +                           + DL  +P P 
Sbjct: 139 IEDAFPQGKHILMEHFYRRMRKRFNILMEGDKPVGGKWNLDANNRNAFKEQDLADIPNPL 198

Query: 181 --AIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA 238
             A  ++            +        ++P+    AL++L  FC+  +  +   +D   
Sbjct: 199 LFANEVSAIQARLKRHNINNMGHSTNPLIWPLNRSQALNLLAHFCQHCLPKFGFFQDAMT 258

Query: 239 IQGT-------SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNELI-WRE 289
              T       S++S  L+  +LSP++        F              ++ ++I WRE
Sbjct: 259 ANHTANWSLYHSRISFALNCKLLSPKEVIESALASFEHSQGGISLDQIEGFVRQIIGWRE 318

Query: 290 FYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWM 349
           + R +                T  +           +  G T    I  A+ Q     + 
Sbjct: 319 YIRAVYWANMPNYQTLNHFSATRALP--------GYFWNGNTKMNCIKHAVNQSLDYAYA 370

Query: 350 HNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
           H+  R++        +  +    + +++   +D 
Sbjct: 371 HHIQRLMVTGNFALLIGANPDEVDAWYLGIYIDA 404


>gi|307105009|gb|EFN53260.1| hypothetical protein CHLNCDRAFT_137186 [Chlorella variabilis]
          Length = 204

 Score = 46.9 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 13/106 (12%)

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCWNRLKEEFV 268
             GE  AL  L++F                   +S ++P+L+ G LSPR+     +    
Sbjct: 88  QGGEGEALRQLQRFVAAASALGAAY----GSNFSSNIAPWLATGCLSPRRMLEDARRALA 143

Query: 269 DLLIKP---------KSGAFSWLNELIWREFYRHLMAFYPSVCMGK 305
                          ++       EL WR+F+R L   Y S+   +
Sbjct: 144 APTAAGATPAASRQLQAPLDWVRCELYWRDFFRLLSRKYSSISRAR 189


>gi|126733699|ref|ZP_01749446.1| hypothetical protein RCCS2_06069 [Roseobacter sp. CCS2]
 gi|126716565|gb|EBA13429.1| hypothetical protein RCCS2_06069 [Roseobacter sp. CCS2]
          Length = 507

 Score = 46.9 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 55/394 (13%), Positives = 119/394 (30%), Gaps = 50/394 (12%)

Query: 25  ALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQC 84
           AL  A  + D  V+A  +A    +  H    ++  F +A++ +  + L   G    Y + 
Sbjct: 17  ALLKADKDKDVVVMA-EVADEASYVPHH--PKKIAFTFAAMRKFAQVLRADGWTVAYTKL 73

Query: 85  SNFDD---SIEWLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR------LQHRVICKS 135
            + ++       L     +     + Y    E  E R  + L         L       +
Sbjct: 74  DDPENSGSITGELIRRAAEFDAAGVVY---TEPGEWRLIEALGDMPLKTHSLPDTRFIAT 130

Query: 136 FDDSVLLPPG-----------SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVP---A 181
             D      G            +      +     P       +          V     
Sbjct: 131 HQDFDDWAEGRKQLRMEYFYRDMRRKTGLLMDGDKPEGGKWNYDHDNRKPAPDQVDFGGP 190

Query: 182 IRLTGPVTPSNIPRF----FDYPFQAIDPMFPIGEQN-ALHILRKFCKEKVYYYVEQRDI 236
           ++ T   T S +       F   F  ++P +   +   A   L  + K  +  + + +D 
Sbjct: 191 MQFTPDETVSEVLTLVGDRFADNFGDLEPFWFATDTGQARQHLAHWLKGGLPKFGDFQDA 250

Query: 237 PAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFY 291
                     + +  Y++ G+L P +   + ++ + +    P +    ++ ++I WRE+ 
Sbjct: 251 MLNDNRFLYHAIVGLYINAGLLDPLEVCQKAEDAYRE-GHAPLNAVEGFIRQIIGWREYV 309

Query: 292 RHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMH 350
           R +     P                   D  L   +  G T    I  ++ Q     + H
Sbjct: 310 RGIYFREGPDYVTRNALG---------HDRKLPAMYWGGETKMNCIAKSVGQTKQEAYAH 360

Query: 351 NRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
           +  R++          +      E++++   D  
Sbjct: 361 HIQRLMVTGNFALLAGIAPAEVHEWYLAVYADAY 394


>gi|86131287|ref|ZP_01049886.1| deoxyribodipyrimidine photolyase-related protein [Dokdonia
           donghaensis MED134]
 gi|85818698|gb|EAQ39858.1| deoxyribodipyrimidine photolyase-related protein [Dokdonia
           donghaensis MED134]
          Length = 511

 Score = 46.9 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 55/389 (14%), Positives = 129/389 (33%), Gaps = 62/389 (15%)

Query: 64  SLLQVQKSLSQKGIVFQYHQCSNFDD---SIEWLDSYCLQQRVTKLFYNRQYE-INEVRR 119
           ++ +    L ++G    Y+Q  +  +     E L+   +Q  + +     +Y+  +E R 
Sbjct: 53  AMREFASWLQERGHTVVYYQLDDARNTQSLTENLEQLIVQYDIEQF----EYQLPDEYRL 108

Query: 120 DKLLEKRLQH-RVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLP 178
           D+LL +  +   +  +S D    +   S      + +K    F       +++     + 
Sbjct: 109 DELLVRFRESVNIPVQSCDTEHFM---SSRTDLQEFFKGKKQFTMEYFYRMMRKRYDIMM 165

Query: 179 VPAIRLTGPVTPSNIPRFFDYPFQAIDPM------------------------------- 207
           +      G     +      +  + + P                                
Sbjct: 166 INDKDPEGGKWNFDHSNRNKWKGETLIPHERGFRKDAREIVELLEKEGVKTIGRITEKHF 225

Query: 208 -FPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNR 262
            +P    + L +LR FC+  + ++ + +D           S+LS  ++  +L P++    
Sbjct: 226 NWPTSRADGLSVLRYFCENLLVHFGDYQDAMDPDQAYLYHSRLSFAMNSKLLDPQEVIET 285

Query: 263 LKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDS 320
           + + + +       S    ++ + L WRE+ R +        M  P       +E   D 
Sbjct: 286 VIDYWRNHSDDISISQVEGFVRQILGWREYMRGMY------WMQMPEFGTVNTLENTNDL 339

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
                   G T    +  ++       + H+  R++         + D    +E+++   
Sbjct: 340 PDFYWT--GKTKMNCLSCSINNSLDNAYAHHIQRLMVTGNYALLTMCDPLQVDEWYLGIY 397

Query: 381 LDG----DLASNNGGWQWAASTGNDSVPY 405
           +D     ++ +  G  QWA      + PY
Sbjct: 398 IDAIEWVEITNTRGMSQWADGGKIATKPY 426


>gi|70939369|ref|XP_740236.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56517812|emb|CAH84909.1| hypothetical protein PC301304.00.0 [Plasmodium chabaudi chabaudi]
          Length = 204

 Score = 46.9 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 54/155 (34%), Gaps = 14/155 (9%)

Query: 11  LVWLRNDLRITDNKALYAA---CHNSDAKVIAV-FIATPEQWRQHGISARQSHFIYASLL 66
           L+ L  D RI DN ++  A      +   ++A  +I   EQ+ +     R  +     L 
Sbjct: 34  LLLLTRDFRIADNWSIIYAHDLAKKNKCNLLACTYINRKEQFTE-----RHINIKLKVLK 88

Query: 67  QVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYN-RQYEINEVRRDKLLEK 125
            +++   +  I F        D+ +E+L      Q +  +  +    E  +   + L+  
Sbjct: 89  NLEEEFKKLNIPFYVIPIFMIDEFMEFLRI----QEIKTVVCDFHPLEYQKQFVENLVHM 144

Query: 126 RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTP 160
             + ++     D   ++P            +   P
Sbjct: 145 SNKKKIKVLQVDSHNIIPLWMTSKMEESSTRTIKP 179


>gi|255017124|ref|ZP_05289250.1| hypothetical protein LmonF_03773 [Listeria monocytogenes FSL
           F2-515]
          Length = 53

 Score = 46.9 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 439 YIHAPHSWLDKND------LSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           +IH P    +         L  +YP P++DHK+     + +Y  +K+ 
Sbjct: 1   FIHQPEKMSEIEQKEYGLLLGKDYPFPLIDHKERRKLAIARYEFSKEH 48


>gi|86140427|ref|ZP_01058986.1| Protein related to deoxyribodipyrimidine photolyase
           [Leeuwenhoekiella blandensis MED217]
 gi|85832369|gb|EAQ50818.1| Protein related to deoxyribodipyrimidine photolyase
           [Leeuwenhoekiella blandensis MED217]
          Length = 512

 Score = 46.5 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 114/359 (31%), Gaps = 44/359 (12%)

Query: 61  IYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEINEVRRD 120
            ++++    + L ++G    Y+Q  + D+  +   +     +   +        +E R D
Sbjct: 51  FFSAMRNFSQWLQERGHSVIYYQLDHPDNEQDLTQNLEKLFKAHHIERFEYQLPDEYRLD 110

Query: 121 KLLEKRLQ------HRVICKSFDDSV----------------LLPPGSILNHALQMYKVY 158
           + L++           V  + F  S                          + + M    
Sbjct: 111 QQLKEFSDSLELDSDAVDTEHFLTSRTDLETFFKGKKTYTMEYFYRDMRKKYDIMMANAK 170

Query: 159 TPFRKAL--IQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPM------FPI 210
            P        Q+  +    +  +P  R       +      +   + +  +      +P 
Sbjct: 171 DPEGGKWNFDQSNRKKWKGAPEIPHERGFRKDVSALCKMIEEAGVKTMGSIDEQQFNWPT 230

Query: 211 GEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEE 266
             ++ L +L  FC   + ++ + +D           S+LS  ++  +L P +   ++ + 
Sbjct: 231 SREDGLSVLNYFCSNLLKHFGDYQDAMDPDQIYLFHSRLSFAMNSKLLHPLEVIEKVIDH 290

Query: 267 FVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
           +         S    ++ + L WRE+ R +        M  P    + K+  +  + L  
Sbjct: 291 WRANKDDIDISQVEGFVRQILGWREYMRGIY------WMKMPGYRRSNKL--DNQNELPD 342

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            +    T    +  A++Q     + H+  R++                + +++   +D 
Sbjct: 343 FYWTAETKMNCMHHAIKQSLDHAYAHHIQRLMITGNYALLTQTHPDEVDAWYLGIYIDA 401


>gi|83858269|ref|ZP_00951791.1| hypothetical protein OA2633_02181 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853092|gb|EAP90944.1| hypothetical protein OA2633_02181 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 509

 Score = 46.5 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 77/232 (33%), Gaps = 23/232 (9%)

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                 +    LT  V      RF D         + + +++A   L  F +  +  + +
Sbjct: 191 PPERAFIEPDALTREVLALVEARFPDQFGDLEAFGYAVTQEDAAAQLDWFIENGLPCFGD 250

Query: 233 QRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIW 287
            +D    +      S LS YL+ G+L P +   R +  +      P +    ++ + L W
Sbjct: 251 YQDALKQEEAFLFHSVLSLYLNCGLLDPLEVCRRAEAAYKQGQA-PLNAVEGFIRQILGW 309

Query: 288 REFYRHLMAFYPSVCMGKPFIPWTEKIE---WNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           RE+ R +   +    + +  +     +    W+ D           T    +   +    
Sbjct: 310 REYVRGVYWRFMPDYLERNALEAKRNLPDFYWSAD-----------TDMACVRDVIITTR 358

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD---LASNNGGWQ 393
              + H+  R++          VD +   E++++   D      A N  G  
Sbjct: 359 KHAYAHHIQRLMVTGNFALLAGVDPKAVNEWYLAVYADAYEWVEAPNTHGMA 410


>gi|331239782|ref|XP_003332543.1| cryptochrome 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309311533|gb|EFP88124.1| cryptochrome 2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 68

 Score = 46.5 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 7  MSVHLVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIY 62
          M++   W   DLR+ ++ AL  A      ++  V+   P       +   +  F+ 
Sbjct: 1  MTLSRFW--TDLRVHESPALIKALELGPVELYPVWCWDPYYIYNTPVGPNRWQFLL 54


>gi|294055447|ref|YP_003549105.1| deoxyribodipyrimidine photolyase-related protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614780|gb|ADE54935.1| deoxyribodipyrimidine photolyase-related protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 512

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 54/383 (14%), Positives = 110/383 (28%), Gaps = 47/383 (12%)

Query: 38  IAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWL 94
           + +F    E  R      ++  F+++++      L   G    Y +  +       +  L
Sbjct: 28  VCLFEIRDEACRVRHH-KKKIAFLFSAMRHFAAELRLDGFTLHYTKLDDPSNTHSFVGEL 86

Query: 95  DSYCLQQRVTKLFYNRQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQM 154
                Q +  KL +    E       +   + L   V  +  D   L       N A   
Sbjct: 87  TRLIRQHQPEKLIFTAPSEYALEVDAQGWSETLNIPVEIRE-DSRFLCSRNEFRNWAEGR 145

Query: 155 YKVYTPFRKALIQNLVQADLRSLPVP---------AIRLTGPVTPSNIPRFFDYPFQAID 205
            ++   F    ++      +     P           R   PV       +   P     
Sbjct: 146 KQLRMEFFYRHMRERYSILMDGPKQPIGGQWNYDAENRKRAPVDLHIPKTYHTEPDATTS 205

Query: 206 PMFPIGEQN-------------------ALHILRKFCKEKVYYYVEQRDIPAIQGT---- 242
            +  + EQ                    A+  L  F +E++  + + +D      +    
Sbjct: 206 SVLELVEQAYPDHFGALENFHYAVTRADAVQALELFIRERLSSFGDYQDAMLHDESWLFH 265

Query: 243 SQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYPSV 301
           S +S Y++ G+L P +C  + +  +      P +    ++ + L WREF R +       
Sbjct: 266 SHISHYINCGLLDPLECIEQAETAYHS-GHAPLNAVEGFIRQILGWREFVRGIYWLKMPD 324

Query: 302 CMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFL 361
                F+  T  +        L       T    +   +       + H+  R++     
Sbjct: 325 YERANFLNSTRGLP------ALYWGAP--TKMNCLARCVENTRLNAYAHHIQRLMVLGNF 376

Query: 362 VKDLLVDWRIGEEYFMSQLLDGD 384
                +      E+F     D  
Sbjct: 377 ALIAGISPAEVNEWFWIVYADAY 399


>gi|163754254|ref|ZP_02161377.1| deoxyribodipyrimidine photolyase-like protein [Kordia algicida
           OT-1]
 gi|161326468|gb|EDP97794.1| deoxyribodipyrimidine photolyase-like protein [Kordia algicida
           OT-1]
          Length = 511

 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 46/359 (12%), Positives = 113/359 (31%), Gaps = 51/359 (14%)

Query: 63  ASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYE-INEVRRDK 121
            S     ++     + +      N  D ++ L     +Q++ K     +Y+  +E R D+
Sbjct: 55  RSFADWLQNEKHAIVYYSLDDEKNQQDLVQNLKQLMDEQKIEKF----EYQLPDEYRLDE 110

Query: 122 LLEKRLQHR-VICKSFDDSVLLPPGSILN--HALQMYKVYTPFRKALIQNLVQADLRSLP 178
            L+       +  ++FD    L   +        +   V   F + + +      +    
Sbjct: 111 QLKNFCDELSIETEAFDTEHFLTSRTDFTTFFEGKKQMVMEYFYRDMRKKYDIMMVNDKN 170

Query: 179 VPAIRLTGPVTPSNIPR-FFDYPFQA--------------------------IDPMFPIG 211
               +     +     +   + P +                            +  +P  
Sbjct: 171 PEGGKWNFDQSNRKKWKGSPEIPQEKQLKNSVEDIYEMIQNAEIETIGNIDVANFHWPTN 230

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEF 267
             ++L +L  FC+E + ++ + +D           S+LS  ++  +L P++    +   +
Sbjct: 231 RADSLKLLDYFCEELLVHFGDYQDAMHTDEHFLFHSRLSFAMNSKMLHPKEVIETVISYW 290

Query: 268 VDLLIK-PKSGAFSWLNE-LIWREFYRHLMAF-YPSVCMGKPFIPWTEKIEWNKDSHLLQ 324
            D       S    ++ + L WRE+ R +     P+                N  + L  
Sbjct: 291 RDHKDAIDISQVEGFVRQILGWREYMRGMYWKEMPNYSTLNTL---------NNTNSLPD 341

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
            +  G T    +  A+ Q     + H+  R++          +     + +++   +D 
Sbjct: 342 FFWTGNTKMNCLKHAISQSLEKAYAHHIQRLMITGNFALLTQMHPDEVDAWYLGIYIDA 400


>gi|118773275|gb|ABL14181.1| cryptochrome 1 [Meleagris gallopavo]
          Length = 126

 Score = 45.8 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 447 LDKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
             K  + +NYP P+V+H +A    + +     +Q
Sbjct: 6   AAKCVIGVNYPKPMVNHAEASRLNIERMKQIYQQ 39


>gi|310831138|ref|YP_003969781.1| putative photolyase [Cafeteria roenbergensis virus BV-PW1]
 gi|309386322|gb|ADO67182.1| putative photolyase [Cafeteria roenbergensis virus BV-PW1]
          Length = 480

 Score = 45.8 bits (107), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 72/199 (36%), Gaps = 18/199 (9%)

Query: 222 FCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIK-PKS 276
           F +E++  Y   +D   I       + +SP +++G+L+  +      E +       P +
Sbjct: 222 FLQERLKNYGPYQDAVDINKPFGFHAVISPMMNVGMLTDTEVIKISYEYYQTNKNNIPIN 281

Query: 277 GAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPI 335
               ++ ++I WR +   +            F+  T K+           W +G TG   
Sbjct: 282 SFEGFIRQVIGWRNYVYLIYLEEGDKIKQMNFLNHTNKLS--------NKWWEGNTGILP 333

Query: 336 IDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL----ASNNGG 391
           +D  ++++    + H+  R++     +    VD       FM   +D        +  G 
Sbjct: 334 LDDIIKKIVNYAYAHHIERLMYLGNFLLISQVDPNEVYRIFMEWTIDSYDWVMVPNVYGM 393

Query: 392 WQWAASTGNDSVPYFRIFN 410
            Q++      S  YF   N
Sbjct: 394 SQFSDGGLMMSRTYFSSSN 412


>gi|322435348|ref|YP_004217560.1| deoxyribodipyrimidine photolyase-related protein [Acidobacterium
           sp. MP5ACTX9]
 gi|321163075|gb|ADW68780.1| deoxyribodipyrimidine photolyase-related protein [Acidobacterium
           sp. MP5ACTX9]
          Length = 565

 Score = 45.4 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 33/213 (15%)

Query: 205 DPMFPIGEQNALHILRKFCKEKVYYY----VEQRDIPAIQGTSQLSPYLSIGVLSPRQCW 260
           D   P  + ++    + F   ++ ++       RD       S+ S  L++G L      
Sbjct: 240 DFDLPCTQSDSDAFWQFFLTHQLPHFGRFEDAMRDDHLQLFHSKTSVLLNLGRLLAMDLI 299

Query: 261 NRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPW-TEKIEWNK 318
             +     +    P +    ++ +L+ WREF RHL        +    +P    K+    
Sbjct: 300 RDVAARAAE-GTAPMASCEGFIRQLLGWREFMRHLHEQTDGYRLLAGHVPQEPRKVPHEF 358

Query: 319 DSHLL-------QAWKQGYT-------------------GFPIIDAAMRQLNTIGWMHNR 352
                       + W QG T                   G   +D  ++Q+   GW H+ 
Sbjct: 359 SPDAPGAPRLDSETWVQGATPSALGASLTLPAAYWGIESGLHCLDTVVKQVIHEGWSHHI 418

Query: 353 LRMITASFLVKDLLVDWRIGEEYFMSQLLDGDL 385
            R++  S L        R   ++F    +D   
Sbjct: 419 TRLMVLSNLANLCGFSPRELTDWFWFAYVDAYD 451


>gi|54780882|gb|AAV40607.1| cryptochrome 2 [Erithacus rubecula]
          Length = 128

 Score = 45.4 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 442 APHSWL--DKNDLSLNYPLPIVDHKKACHHTLNQYYAAKKQ 480
           AP S     K  + ++YP P+V+H +     + +     +Q
Sbjct: 5   APESVQKEAKCIIGVDYPKPMVNHAETSRLNIERMKQIYQQ 45


>gi|319795065|ref|YP_004156705.1| deoxyribodipyrimidine photolyase-related protein [Variovorax
           paradoxus EPS]
 gi|315597528|gb|ADU38594.1| deoxyribodipyrimidine photolyase-related protein [Variovorax
           paradoxus EPS]
          Length = 513

 Score = 45.4 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 57/420 (13%), Positives = 120/420 (28%), Gaps = 80/420 (19%)

Query: 57  QSHFIYASLLQVQKSLSQKGIVFQYHQ--CSNFDDSIEWLDSYCLQQRVTKLFYNRQYEI 114
           ++    +++    ++++ +G+   Y +    +F      L       R   +      E 
Sbjct: 49  RTALFLSAMRHFAEAITARGMPIDYLKLGAHDFASIEAALTHALSHHRPRAVVM---IEA 105

Query: 115 NEVRRDKLLEKRLQHRVICKSFDDSVLL----------------------------PPGS 146
            E R ++ + +  Q   +  +  D +                                  
Sbjct: 106 GEWRLEQTIARVCQAAQVRFAVRDDLHFMASRAEFSEHAHGKRRLVMEDFYRRMRLKHEV 165

Query: 147 ILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNI----PRFFDYPFQ 202
           +L+   Q       F         +     LP P       +T   +      F  +   
Sbjct: 166 LLDARGQPEGGQWNFDHDNRNAFGRNGPGMLPPPPSFAPDAITREVLADVETHFAGHYGS 225

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIG---------V 253
           A    +P+  + AL  +  F   ++  +   +D           P L  G         +
Sbjct: 226 AAQFDWPVTREQALVAMNDFMAHRLQDFGRFQDAMWTD-----EPVLYHGLLSSSLNLKL 280

Query: 254 LSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY-PSVCMGKPFIPWT 311
           L PR+  +    ++    + P      ++ + L WREF R +  +  P +          
Sbjct: 281 LDPREVIDAAVAQWRS-GVAPLESVEGFVRQILGWREFMRGVYWWRMPKLAAANAL---- 335

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
                N    L   +  G  G   +  A+ Q    G  H+  R++          V    
Sbjct: 336 -----NHHEDLPGWYWTGDVGMNCMKQAIGQTLQRGHAHHIQRLMVTGNFALTFGVAPAQ 390

Query: 372 GEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
              +++S  +D     +L +  G   +A      + P             +   G +IR 
Sbjct: 391 VHAWYLSVYVDAVEWVELPNTVGMSLYADGARFVTKP-------------YAAGGAYIRR 437


>gi|296536187|ref|ZP_06898310.1| deoxyribodipyrimidine photolyase [Roseomonas cervicalis ATCC 49957]
 gi|296263485|gb|EFH09987.1| deoxyribodipyrimidine photolyase [Roseomonas cervicalis ATCC 49957]
          Length = 514

 Score = 45.4 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 89/279 (31%), Gaps = 30/279 (10%)

Query: 140 VLLPPGSILNHALQMYKVYTPFR---KALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
           +LL P          Y      R         + +    ++    + L     P      
Sbjct: 164 LLLEPDGTPTGGQWNYDAENRKRLPPGESPPPVPRFAPDAITREVLELVARRFPRRYGGL 223

Query: 197 FDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIG 252
             +        +P+  ++A   LR F   ++  + + +D  A    +   S +SP L+ G
Sbjct: 224 ESFG-------WPVTARDAGVALRDFLAHRLPRFGDYQDAMAAGEPVLYHSLVSPALNGG 276

Query: 253 VLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFY-PSVCMGKPFIPW 310
           +L P +     + E+      P +    ++ + L WRE+ R L     P    G      
Sbjct: 277 LLDPLEVCQAAEAEYRAGRA-PLNAVEGFIRQILGWREYVRGLYWLRMPGYAEGNALEAK 335

Query: 311 TEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWR 370
                      L + +    T    +   + Q       H+  R++ A        +D  
Sbjct: 336 R---------PLPEFYWSAETDMACLRHTLAQTRDHAHAHHIQRLMVAGNFALLAGIDPA 386

Query: 371 IGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPY 405
               ++++  LD      L + +G   +A      S PY
Sbjct: 387 AVNAWYLAVYLDAYEWVQLPNTHGMALFADGGVMASKPY 425


>gi|46203633|ref|ZP_00051230.2| COG0415: Deoxyribodipyrimidine photolyase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 105

 Score = 45.0 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 340 MRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM---SQLLDGDLASNNGGWQWAA 396
           MR++   G+MHN+LRM     +++                    LDG  A++     W  
Sbjct: 1   MREMRETGYMHNQLRMYWGKKILEWSPSPEEAFARTLRLNNRYFLDGRDANSFTNVAWIF 60

Query: 397 STGNDSVPYFRIFNPTIQG-----KRFDPQG 422
              +      +IF           ++FD + 
Sbjct: 61  GLHDRPWQTRKIFGSVRYQSENSLRKFDAKA 91


>gi|120556011|ref|YP_960362.1| deoxyribodipyrimidine photolyase-related protein [Marinobacter
           aquaeolei VT8]
 gi|120325860|gb|ABM20175.1| deoxyribodipyrimidine photolyase-related protein [Marinobacter
           aquaeolei VT8]
          Length = 510

 Score = 45.0 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 83/272 (30%), Gaps = 20/272 (7%)

Query: 145 GSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPR--FFDYPFQ 202
           G ++    Q       F     +          P              +    F +Y   
Sbjct: 163 GLLMTSEGQPEGGKWNFDTDNRKKWAGKPPAPAPFREEPDAITTEVIELVNEYFSEYFGT 222

Query: 203 AIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQ 258
                + +  + AL  L  F    +  + + +D  +        S LSPYL+ G+L P +
Sbjct: 223 TEGFHYAVTAEQALVALAHFIDFALPCFGDYQDAMSDNEDWLFHSILSPYLNTGLLDPME 282

Query: 259 CWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
                   +      P +    ++ ++I WREF R +          +  +  + ++ W 
Sbjct: 283 VCEEAVRAWHAGRA-PLNAVEGFVRQIIGWREFVRGIYWLLMPGYARENRLGNSRELPW- 340

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
                   +  G T    +  A+       + H+  R++          V      ++++
Sbjct: 341 -------FYWTGDTKMRCMHKAIDATARNAYAHHIQRLMVTGNFALLAGVKPEAICDWYL 393

Query: 378 SQLLDGD----LASNNGGWQWAASTGNDSVPY 405
           +  +D      L +  G    A      S PY
Sbjct: 394 AVYIDAFDWVELPNTLGMVMHADGGYLGSKPY 425


>gi|257485067|ref|ZP_05639108.1| deoxyribodipyrimidine photolyase-related protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 261

 Score = 45.0 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 29/192 (15%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYP 299
            +++S  L+IG+L  RQ  + ++  +    +   + A  ++ +LI WRE+ R +     P
Sbjct: 14  HARISAALNIGLLDLRQICSDVESAYWSGRV-ALNAAEGFIRQLIGWREYVRGVYWLKMP 72

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMIT-A 358
               G  F              L + +  G T    +  A+ Q     + H+  R++   
Sbjct: 73  EYADGNLFG---------NSRPLPEFYWTGETKMNCMSQAIGQSLKHAYAHHIQRLMVTG 123

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGDL---ASNNGGWQWAASTGNDSVPYFRIFNPTIQG 415
           +F +   +V  +I E Y    +   D     +  G    A      S PY          
Sbjct: 124 NFALLAGIVPSQICEWYLAIYMDAFDWVELPNTLGMVMHADGGYLGSKPYC--------- 174

Query: 416 KRFDPQGTFIRH 427
                 G +I+ 
Sbjct: 175 ----ASGQYIKR 182


>gi|239981847|ref|ZP_04704371.1| hypothetical protein SalbJ_20596 [Streptomyces albus J1074]
 gi|291453703|ref|ZP_06593093.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291356652|gb|EFE83554.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 510

 Score = 45.0 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 75/209 (35%), Gaps = 17/209 (8%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDI----PAIQGTSQLSPYLSIGVLSPRQCWNR 262
            FP   + AL+ LR+F  +++  +    D       +   S LS  L++G+L P +C  R
Sbjct: 228 HFPATRREALNALRRFVSDRLATFGPYEDAMLTADPVMSHSLLSSSLNLGLLDPAECVER 287

Query: 263 LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIE-WNKDS 320
            +  +      P +    ++ ++  WRE+  HL   +         +     +  W  D 
Sbjct: 288 AEAAWR-AGEAPLNSVEGFVRQIAGWREYVWHLYWHFGEEYRTTNALGHHAPLPDWWSDL 346

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
                          +   + QL   GW H+  R++           D     ++F    
Sbjct: 347 DADAVTAH------CLSTVLAQLRDTGWTHHIPRLMVLGNYALQRGWDPAALTDWFHRCF 400

Query: 381 LDGD----LASNNGGWQWAASTGNDSVPY 405
           +DG     L +  G  Q+A      + PY
Sbjct: 401 VDGYDWVMLPNVLGMSQYADGGRMTTKPY 429


>gi|238059205|ref|ZP_04603914.1| hypothetical protein MCAG_00171 [Micromonospora sp. ATCC 39149]
 gi|237881016|gb|EEP69844.1| hypothetical protein MCAG_00171 [Micromonospora sp. ATCC 39149]
          Length = 523

 Score = 44.6 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 62/427 (14%), Positives = 127/427 (29%), Gaps = 54/427 (12%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105
           E +RQ  +  +++H + ++L      L  + ++ +          ++     C       
Sbjct: 70  ELFRQRPMHRQKAHLVLSALRHRAAELGDRALLVRAGTFREALARVDGPVEVCHPPSRAG 129

Query: 106 LFYNRQY---------EINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYK 156
           L + R                R D         R   +  D        +   H +    
Sbjct: 130 LAFARSVPGLTILPPRGFLTRREDFAAWADAPRRGALRVAD----FYRWARREHGVFDGP 185

Query: 157 VYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPF-----QAIDPMFPIG 211
                R+    +     + S P P +         +    ++        +     +P  
Sbjct: 186 PGRVPRRPRRADGAAGLVASPPPPIVEDAIDAEVRDELDRWERDGVRFLGRDGPRRYPAT 245

Query: 212 EQNALHILRKFCKEKVYYYVEQRDIPA----IQGTSQLSPYLSIGVLSPRQCWNRLKEEF 267
              A   LR F   ++  Y   +++ +    +   S LS   ++G+L P +     +  +
Sbjct: 246 HAEADARLRHFVAHRLPDYGRYQEVMSAGDPLLTHSVLSSSFNLGLLDPAEAIRAAEGAW 305

Query: 268 VDLLIKPKSGAFSWLNELIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNK---DSHLLQ 324
                   +        L WREF   L  +      G  ++   E +       D+  ++
Sbjct: 306 RKGAASLSAVEPFVQGLLGWREFLWQLYWYLEPGHRGANWLAANEPLPDWFAGLDADAVE 365

Query: 325 AWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG- 383
           A          + A +R      W+H+  R++                  +F    +DG 
Sbjct: 366 ARCLAD-----VLAGVRD---RAWVHHAQRLLVLGNYALQRGWRPAELAGWFRDCFVDGT 417

Query: 384 DLASNN---GGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRHWLPELNNVPTQYI 440
           D A N    G  Q+A     D+ P             +   G     ++ EL++  T   
Sbjct: 418 DWAMNATVIGMSQYADLGRVDTRP-------------YAVDG----RYVDELSDYCTGCR 460

Query: 441 HAPHSWL 447
           + P + L
Sbjct: 461 YQPETTL 467


>gi|119470818|ref|ZP_01613429.1| hypothetical protein ATW7_05746 [Alteromonadales bacterium TW-7]
 gi|119446045|gb|EAW27324.1| hypothetical protein ATW7_05746 [Alteromonadales bacterium TW-7]
          Length = 518

 Score = 44.6 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 99/299 (33%), Gaps = 31/299 (10%)

Query: 146 SILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAI------RLTGPVTPSNIPRFFDY 199
            +L    +       +         + DL+S+P P +       +   +   NI  F + 
Sbjct: 165 DLLMEDDKPAGGKWNYDSNNRNKFSKQDLKSIPEPKLFKNDVSHILARLKKHNIAYFGEI 224

Query: 200 PFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQG-------TSQLSPYLSIG 252
               ++  +    + A   L  FCK  +  + + +D    Q         S++S  L+  
Sbjct: 225 KEGKLE--WSTSRKQAKESLEYFCKHLLVNFGKFQDAMTDQSKDNTSLYHSRISFALNTK 282

Query: 253 VLSPRQCWNRLKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIP 309
           +L P     R+  EF     +   S    +  + L WRE+ R       P          
Sbjct: 283 LLHPLYVIKRVISEFEQRPDEISLSQVEGFTRQILGWREYVRAVYWVNMPDYATKNQLKA 342

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                    +++L Q +  G T    +  +++Q     + H+  R++          ++ 
Sbjct: 343 ---------NNNLPQYFWDGTTKMNCLSHSLQQSLDTAYAHHIQRLMIIGNFCLLSGINP 393

Query: 370 RIGEEYFMSQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
              + +++   +D     ++ +  G  Q+A      + PY    N   +   +     +
Sbjct: 394 DEVDNWYLGVYIDAIEWVEMPNTRGMSQFADDGIIATKPYAASGNYVNKMSDYCKNCQY 452


>gi|332292003|ref|YP_004430612.1| deoxyribodipyrimidine photolyase-related protein [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170089|gb|AEE19344.1| deoxyribodipyrimidine photolyase-related protein [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 511

 Score = 44.6 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 77/211 (36%), Gaps = 20/211 (9%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNR 262
            +P   + +L +L  FC+  + ++ + +D           S+LS  ++  +L P++    
Sbjct: 226 AWPTNRKESLEVLDYFCEHLLVHFGDYQDAMDPDQAYLYHSRLSFAMNSKILDPQEVIET 285

Query: 263 LKEEFVDLLIK-PKSGAFSWLNE-LIWREFYRHLMAF-YPSVCMGKPFIPWTEKIEWNKD 319
           +   +     +   S    ++ + L WRE+ R +     P+                   
Sbjct: 286 VINYWRAHKEEINISQIEGFVRQILGWREYMRGMYWKEMPTFATTNHL---------ENK 336

Query: 320 SHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQ 379
           + L + +  G T    +  ++       + H+  R++         + D    +E+++  
Sbjct: 337 NPLPEFYWTGKTKMNCLKCSINNSLDNAYAHHIQRLMITGNYALLTMCDPAQVDEWYLGI 396

Query: 380 LLDG----DLASNNGGWQWAASTGNDSVPYF 406
            +D     ++ +  G  QWA      + PY 
Sbjct: 397 YIDAIEWVEITNTRGMSQWADGGKIATKPYI 427


>gi|118590454|ref|ZP_01547856.1| hypothetical protein SIAM614_02726 [Stappia aggregata IAM 12614]
 gi|118436917|gb|EAV43556.1| hypothetical protein SIAM614_02726 [Stappia aggregata IAM 12614]
          Length = 518

 Score = 44.6 bits (104), Expect = 0.038,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 72/228 (31%), Gaps = 26/228 (11%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSIGVLSPRQCWNR 262
            F +  ++A      F +E +  +   +D           S LS YL+ G+L   +   R
Sbjct: 232 WFAVTRKDAEKACDHFLREALADFGTYQDAMLSGRKFLFHSVLSTYLNAGLLDA-KALCR 290

Query: 263 LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIPWTEKIEWNKDS 320
             EE       P +    ++ +++ WRE+ R +     P                   D 
Sbjct: 291 KVEEAWQADKVPLNAVEGFIRQIVGWREYVRGIYWLKMPDYVDSNALGA---------DR 341

Query: 321 HLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQL 380
            L   +  G T    +  A+ Q     + H+  R++          V  +   E+++   
Sbjct: 342 PLPDFYWTGKTRMRCLAEAIGQTLEEAYAHHIQRLMLTGNFALLAGVRPKDVHEWYLMVY 401

Query: 381 LDGD----LASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTF 424
            D        +  G  Q+A      S PY         G   D    +
Sbjct: 402 ADAYEWVEAPNTIGMSQFADGGLLGSKPY------VSSGNYIDKMSDY 443


>gi|24586404|ref|NP_724615.1| CG18853 [Drosophila melanogaster]
 gi|21627731|gb|AAG22302.2| CG18853 [Drosophila melanogaster]
 gi|162944954|gb|ABY20546.1| TA01342p [Drosophila melanogaster]
          Length = 330

 Score = 44.2 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 11/116 (9%)

Query: 323 LQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASF---LVKDLLVDWRIGEEYFMSQ 379
           L+  ++  T   + ++A  QL   G MH  LRM  A                        
Sbjct: 208 LEELEKSLTYDDLWNSAQLQLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKY 267

Query: 380 LLDGDLASNNGGWQWAASTGNDS-------VPYFRIFNPTIQGKRFDPQGTFIRHW 428
            LDG   +   G  W+    +D            R  N     ++FD    F+  +
Sbjct: 268 SLDGRDPNGYVGCMWSIGGVHDMGWKERAIFGKVRYMNYQGCRRKFDVNA-FVMRY 322


>gi|119775629|ref|YP_928369.1| hypothetical protein Sama_2497 [Shewanella amazonensis SB2B]
 gi|119768129|gb|ABM00700.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 569

 Score = 44.2 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 66/192 (34%), Gaps = 24/192 (12%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ-------GTSQLSPYLSIGVLSPRQC 259
           ++PI  + +L +L  FC+  +  +   +D              S+LS  ++  +L P + 
Sbjct: 276 LWPINREQSLALLAHFCRHCLPLFGRFQDAMTANHASAWSLYHSRLSFSINSKLLHPGEV 335

Query: 260 WNRLKEEFVDLLIKPKSG------AFSWLNE-LIWREFYRH-LMAFYPSVCMGKPFIPWT 311
                  +    I   +G         ++ + L WRE+ R    A  P   M        
Sbjct: 336 IKAAISAYEASCIDGANGDVDMAQVEGFVRQILGWREYVRGVYWANMPDYGMLNALGAEN 395

Query: 312 EKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRI 371
                     L   +  G T    +  A+ Q     + H+  R++          +D + 
Sbjct: 396 R---------LPHYFWSGDTRMNCMRHAIGQSLDYAYAHHIQRLMITGNFCLLTDIDPKQ 446

Query: 372 GEEYFMSQLLDG 383
            +++++   +D 
Sbjct: 447 VDDWYLGIYVDA 458


>gi|87200407|ref|YP_497664.1| deoxyribodipyrimidine photolyase-related protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136088|gb|ABD26830.1| deoxyribodipyrimidine photolyase-related protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 522

 Score = 43.9 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 70/218 (32%), Gaps = 16/218 (7%)

Query: 173 DLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVE 232
                      +TG V      RF  +     +  +P+    A      F  +++  + +
Sbjct: 199 PPAPPRFTPDSITGEVLDLVSTRFARHFGSLENFGWPVTRTEAEAARDAFLADRLPRFGK 258

Query: 233 QRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-W 287
            +D           + LSP ++IG+L P     R + E+ +    P      +  ++I W
Sbjct: 259 YQDAMVAGQDFLFHAVLSPAINIGLLDPLDLCRRAETEWREGRA-PLEAVEGFTRQIIGW 317

Query: 288 REFYRHLMAF-YPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTI 346
           RE+ R +     P++                    L   +  G T    +   +R     
Sbjct: 318 REYVRGMYWLEMPALADANGLDAHR---------PLPDFYWTGDTPMRCLADCVRTTRDN 368

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGD 384
            + H+  R++          +  +   ++++    D  
Sbjct: 369 AYAHHIQRLMVLGNFALLAGLRPQDVADWYLVVYADAF 406


>gi|149186083|ref|ZP_01864397.1| hypothetical protein ED21_30139 [Erythrobacter sp. SD-21]
 gi|148830114|gb|EDL48551.1| hypothetical protein ED21_30139 [Erythrobacter sp. SD-21]
          Length = 526

 Score = 43.9 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 12/145 (8%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFY-P 299
            S LS  +++G+L P +   R ++ + D    P +    ++ ++I WRE+ R       P
Sbjct: 275 HSMLSTSINLGLLGPLELCQRAEKAYKD-GKAPLNSVEGFIRQIIGWREYVRGFYWHQMP 333

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +                    L + +  G T    +   +R        H+  R++   
Sbjct: 334 HLQRANALNAQR---------GLPEFYWTGETDMACLADCIRSTRENAHAHHIQRLMVLG 384

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGD 384
                  V+ R  +++++    D  
Sbjct: 385 NFALLAGVNPREVQDWYLVVYADAY 409


>gi|149179584|ref|ZP_01858112.1| hypothetical protein PM8797T_18711 [Planctomyces maris DSM 8797]
 gi|148841577|gb|EDL56012.1| hypothetical protein PM8797T_18711 [Planctomyces maris DSM 8797]
          Length = 458

 Score = 43.9 bits (102), Expect = 0.064,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 12/145 (8%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFY-P 299
            S LS  +++G+L P +   R ++ + D    P +    ++ ++I WRE+ R       P
Sbjct: 253 HSMLSTSINLGLLGPLELCQRAEKAYKD-GKAPLNSVEGFIRQIIGWREYVRGFYWHQMP 311

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +                    L + +  G T    +   +R        H+  R++   
Sbjct: 312 HLQRANALNAQR---------GLPEFYWTGETDMACLADCIRSTRENAHAHHIQRLMVLG 362

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGD 384
                  V+ R  +++++    D  
Sbjct: 363 NFALLAGVNPREVQDWYLVVYADAY 387


>gi|85712864|ref|ZP_01043906.1| Protein related to deoxyribodipyrimidine photolyase [Idiomarina
           baltica OS145]
 gi|85693328|gb|EAQ31284.1| Protein related to deoxyribodipyrimidine photolyase [Idiomarina
           baltica OS145]
          Length = 518

 Score = 43.9 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 92/277 (33%), Gaps = 25/277 (9%)

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMF 208
                 +      R  L ++               +   VT  +I  F D   Q    ++
Sbjct: 172 KPEGGQWNYDHDNRNKLPKSSSVIAPSCPANDVTDIHQMVTQQDINYFGDIDPQHF--IW 229

Query: 209 PIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ---------GTSQLSPYLSIGVLSPRQC 259
           P   + A  IL  FC+ ++ ++   +D                S+LS  ++  +L P + 
Sbjct: 230 PTTRKQARDILSFFCQHQLAHFGTYQDAITDTEVHDHAWSLYHSRLSFAMNSKMLHPMEV 289

Query: 260 WNRLKEEFVDLLIK-PKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIEWN 317
            N +   + +       +    ++ ++I WREF R +   +         +     +   
Sbjct: 290 VNAVLTHWRENEGTISINQVEGFIRQIIGWREFIRAIYWHHMPEYKNLNALGHQRDLP-- 347

Query: 318 KDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFM 377
                 + +  G T    +  A++Q     + H+  R++           D    + +++
Sbjct: 348 ------KFFWDGETHMRCLSQAIKQSLKYAYAHHIQRLMLTGNFALLAGCDPDQVDGWYL 401

Query: 378 SQLLDG----DLASNNGGWQWAASTGNDSVPYFRIFN 410
              +D     +L +  G  Q+A +    + PY    N
Sbjct: 402 GIYIDALEWVELPNTRGMSQYADNGVLATKPYISSAN 438


>gi|146281338|ref|YP_001171491.1| hypothetical protein PST_0952 [Pseudomonas stutzeri A1501]
 gi|145569543|gb|ABP78649.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 511

 Score = 43.5 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 53/418 (12%), Positives = 121/418 (28%), Gaps = 59/418 (14%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105
           E+        ++  FI++++    ++L  +G+   Y +  +  +S           R   
Sbjct: 38  EEAGHVPHHPQKIAFIFSAMRHFAEALRLRGVAVDYVRLDDPANSGSLAGEL---LRFAT 94

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRV--ICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
           L   R   + E   D  +E+ L      I    D   +         A    ++   F  
Sbjct: 95  LHRPRSIHVTEAG-DWRVEQALNGCGLPITWHADRRFICSRSEFARWAQGKAQLRMEFFY 153

Query: 164 ALIQNLVQ----------------------------ADLRSLPVPAIRLTGPVTPSNIPR 195
             ++                                     L   A  +T  V      R
Sbjct: 154 REMRRRTGLLLNPDGSPEGGVWNLDADNRKALPRGLHGPIRLSFTADDITREVLTLVSSR 213

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSI 251
           F  +        +P+    A  +   F    +  + + +D  A        +++   L++
Sbjct: 214 FAHHYGGLDGFDYPVTHAEAERLWLNFLDFGLAAFGDYQDAMASGEPFLFHARIGAALNV 273

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIP 309
           G+L  R+    ++  +    +   + A  ++ +LI WRE+ R +     P       F  
Sbjct: 274 GLLDLRRLCADVEAAYRRGHV-ALNAAEGFIRQLIGWREYVRGIYWLQMPDYARRNAFG- 331

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                    D  L + +  G T    I   + Q   + + H+  R++          +  
Sbjct: 332 --------NDRPLPEFYWTGRTRMNCIRQVIGQTLELAYAHHIQRLMVTGNFALLAGIAP 383

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
               +++++  +D                 +      + +            G +I+ 
Sbjct: 384 PALCDWYLAVYMDAFEWVELPNVLGMVLHADGGYLGSKPYCA---------SGQYIKR 432


>gi|85709176|ref|ZP_01040242.1| hypothetical protein NAP1_08035 [Erythrobacter sp. NAP1]
 gi|85690710|gb|EAQ30713.1| hypothetical protein NAP1_08035 [Erythrobacter sp. NAP1]
          Length = 522

 Score = 43.1 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 69/190 (36%), Gaps = 16/190 (8%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FY 298
             S LS  +++G+L P +   R ++ + D    P +    ++ ++I WRE+ R       
Sbjct: 269 YHSMLSTSINLGLLDPVELCKRAEQAYED-GKAPINSVEGFIRQIIGWREYIRGFYWLHM 327

Query: 299 PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITA 358
           P +                    L + +  G T    +   +R  +     H+  R++  
Sbjct: 328 PGLESDNKLNAQR---------ALPEFFWTGETDMRCLADCIRSTHDNAHAHHIQRLMVL 378

Query: 359 SFLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPYFRIFNPTIQ 414
                   ++ R  ++++++   D      L + +G   +A      + PY    N   +
Sbjct: 379 GNFCLLAGINPRDVQDWYLAVYADAYEWVELPNVSGMILYADGGNLATKPYAASGNYINK 438

Query: 415 GKRFDPQGTF 424
              +  + ++
Sbjct: 439 MSDYCKECSY 448


>gi|85690824|gb|ABC73713.1| polyprotein [Papaya ringspot virus]
          Length = 3344

 Score = 42.7 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 76/237 (32%), Gaps = 18/237 (7%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
            +  +F       +  +   S    H++ + L      K L +        +  +  F++S
Sbjct: 2553 ICPLFRSYLECNEEAKTFFSPLMGHYMKSVLSKEAYVKDLLKYSSDIIVGEVDHDVFEES 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VAQVVELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYKGKKRKYFEGSTVEHRHTLV 2671

Query: 149  NHA------LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD--YP 200
              +       +M       +  L         ++    A  L   +        F+  + 
Sbjct: 2672 RKSCERLYEGRMGVWNGSLKAELRPAEKFWPKKTRSFTAAPLDTLLGAKVCVDDFNNWFY 2731

Query: 201  FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             + ++  + +G         +F ++    +V   D    Q  S L+PYL   VLS R
Sbjct: 2732 SKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|84683384|ref|ZP_01011287.1| hypothetical protein 1099457000264_RB2654_18463 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668127|gb|EAQ14594.1| hypothetical protein RB2654_18463 [Rhodobacterales bacterium
           HTCC2654]
          Length = 509

 Score = 42.7 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 63/185 (34%), Gaps = 15/185 (8%)

Query: 241 GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWREFYRHLMAFYP 299
             S LSP L+IG+L P     R +  + D  + P + A  ++ + L WRE+ R +     
Sbjct: 261 YHSILSPALNIGLLDPLDLCRRAEAAYRDGKV-PLNSAEGFIRQILGWREYVRGIYMMDG 319

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
               G+  +     + W         +  G T    +   +       + H+  R++   
Sbjct: 320 PGYTGRNALRHERDLPW--------VFWSGDTDMACLSEVVTLTRENAYAHHIQRLMITG 371

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGD----LASNNGGWQWAASTGNDSVPYFRIFN-PTIQ 414
                +  D     ++++S   D        +  G  Q+A      S PY    N     
Sbjct: 372 NFALLIGADPAQVHDWYLSVYADAFEWVEAPNTIGMSQFADGGMIASKPYVSSGNYIDKM 431

Query: 415 GKRFD 419
               D
Sbjct: 432 SNYCD 436


>gi|302856924|ref|XP_002959745.1| hypothetical protein VOLCADRAFT_101264 [Volvox carteri f.
           nagariensis]
 gi|300254460|gb|EFJ39190.1| hypothetical protein VOLCADRAFT_101264 [Volvox carteri f.
           nagariensis]
          Length = 280

 Score = 42.7 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 50/215 (23%), Gaps = 70/215 (32%)

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHR-----------------VICKSFDDSVLLPPGSIL 148
           +    +    E R D  + + L+ +                      F    +     + 
Sbjct: 44  VLTAEEVTSEETRTDVAVARALKQQRRPQADAAAAAGGGSGSAKLLRFWGHTMYHIDDLT 103

Query: 149 ------------NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRF 196
                            M  V+TPFR+ + +          P        P         
Sbjct: 104 QPPEGGGKAAFAPGMKDMPDVFTPFREKVEKRCPVRKDLPPPQKGDLPQPPTEALPAAAA 163

Query: 197 FD-----------------------------YPFQAIDP---------MFPIGEQNALHI 218
                                            F+AI               GE  AL  
Sbjct: 164 AALAAAPPTWEQLPYPPAARPPPPTKQPKAVLDFKAIATPCLHLGTVRYLKGGETAALAR 223

Query: 219 LRKFCKEKV--YYYVEQRD-IPAIQGTSQLSPYLS 250
           LR +  +      Y + R+ +     +++ +P+L+
Sbjct: 224 LRYYLWDSDLIASYFDTRNGMLGGDYSTKFAPWLA 258


>gi|330683894|gb|EGG95665.1| hypothetical protein SEVCU121_0018 [Staphylococcus epidermidis
           VCU121]
          Length = 49

 Score = 42.7 bits (99), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 435 VPTQYIHAPHSWLDK------NDLSLNYPLPIVDHKKACHHTLNQYYA 476
           +  +YIH P  + DK       ++  +YP  IV+HK +  + ++++  
Sbjct: 1   MSRKYIHDPTKYKDKLQEIYHIEIGQDYPKTIVNHKNSRDYVMDKFKQ 48


>gi|327479517|gb|AEA82827.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 503

 Score = 42.3 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 52/418 (12%), Positives = 121/418 (28%), Gaps = 59/418 (14%)

Query: 46  EQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTK 105
           E+        ++  FI++++    ++L  +G+   Y +  +  +S           R   
Sbjct: 30  EEAGHVPHHPQKIAFIFSAMRHFAEALRLRGVAVDYVRLDDPANSGSLAGEL---LRFAT 86

Query: 106 LFYNRQYEINEVRRDKLLEKRLQHRV--ICKSFDDSVLLPPGSILNHALQMYKVYTPFRK 163
           L   R   + E   D  +E+ L      I    D   +         A    ++   F  
Sbjct: 87  LHRPRSIHVTEAG-DWRVEQTLNGCGLPITWHADRRFICSRSEFARWAQGKSQLRMEFFY 145

Query: 164 ALIQNLVQ----------------------------ADLRSLPVPAIRLTGPVTPSNIPR 195
             ++                                     L   A  +T  V      R
Sbjct: 146 REMRRRTGLLLNPDGSPEGGVWNLDADNRKALPRGLHGPIRLSFTADAITREVLTLVSSR 205

Query: 196 FFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQ----GTSQLSPYLSI 251
           F  +        +P+    A  +   F    +  + + +D  A        +++   L++
Sbjct: 206 FAHHYGGLDGFDYPVTHAEAERLWLNFLDFGLAAFGDYQDTMASGEPFLFHARIGAALNV 265

Query: 252 GVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYPSVCMGKPFIP 309
           G+L  R+    ++  +    +   + A  ++ +LI WRE+ R +     P       F  
Sbjct: 266 GLLDLRRLCADVEAAYRKGHV-ALNAAEGFIRQLIGWREYVRGIYWLQMPDYARRNAFG- 323

Query: 310 WTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDW 369
                    D  L + +  G T    +   + Q   + + H+  R++          +  
Sbjct: 324 --------NDRPLPEFYWTGRTRMNCMRQVIGQTLELAYAHHIQRLMVTGNFALLAGIAP 375

Query: 370 RIGEEYFMSQLLDGDLASNNGGWQWAASTGNDSVPYFRIFNPTIQGKRFDPQGTFIRH 427
               +++++  +D                 +      + +            G +I+ 
Sbjct: 376 PALCDWYLAVYMDAFEWVELPNVLGMVLHADGGYLGSKPYCA---------SGQYIKR 424


>gi|327342152|gb|AEA50863.1| cry2-1 [Populus tremula]
          Length = 73

 Score = 42.3 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 25/69 (36%)

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRS 176
           VR   + EK ++  +  +S++  +L  P  I +     +  +  +R       ++     
Sbjct: 5   VRDHNIKEKLVELGIFVQSYNGDLLYEPWEIYDERGYAFTTFEAYRDKCSHMQMEPVSHL 64

Query: 177 LPVPAIRLT 185
            P   +   
Sbjct: 65  PPWRLVPAA 73


>gi|87130664|gb|ABD23970.1| Polyprotein [Papaya ringspot virus]
          Length = 3344

 Score = 41.9 bits (97), Expect = 0.25,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 18/237 (7%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
            +  +F      ++  +   S    H++ + L      K L +        +  +  F+DS
Sbjct: 2553 ICPLFRNYLECDEEAKVFFSPLMGHYMKSILSKEAYTKDLLKYSSDIVIGEVDHDVFEDS 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VAQVIELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 2671

Query: 149  NHA------LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD--YP 200
              +       +M       +  L         ++ P  A  L   +        F+  + 
Sbjct: 2672 RKSCERLYEGRMGIWNGSLKAELRPAEKVLAKKTRPFTAAPLDTLLGAKACVDDFNNWFY 2731

Query: 201  FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             + ++  + +G         +F K+    +V   D    Q  S L+PYL   VLS R
Sbjct: 2732 SKNMECPWTVGMTKFYKGWDEFLKKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|294676260|ref|YP_003576875.1| deoxyribodipyrimidine photolyase-related protein [Rhodobacter
           capsulatus SB 1003]
 gi|294475080|gb|ADE84468.1| deoxyribodipyrimidine photolyase-related protein [Rhodobacter
           capsulatus SB 1003]
          Length = 519

 Score = 41.9 bits (97), Expect = 0.26,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 114/361 (31%), Gaps = 47/361 (13%)

Query: 60  FIYASLLQVQKSLSQKGIVFQYHQCSN---FDDSIEWLDSYCLQQRVTKLFYNRQYEINE 116
            + +++    + L  +GI   Y +  +     D    L     + R   +      E   
Sbjct: 49  LVLSAMRHFAEELRAEGIRVDYVRLDDPGNLQDFTGELARAVARHRPEAVVVTHPGEWRV 108

Query: 117 VRRDKLLEKRLQHRVICKSFDDSVLLPPGS--ILNHALQMYKVYTPFRKALI-------- 166
           +   +    R+   V  +  DD  L  P    +L  A +  ++   +R+           
Sbjct: 109 LELMRGWPGRIGVPVEIRE-DDRFLCAPAEFALLTAAGKTGRMEYFYREMRRRTGLLMEG 167

Query: 167 -------QNLVQADLRSLPVPAIR----------LTGPVTPSNIPRFFDYPFQAIDPMFP 209
                   N    + ++LP               +T  V      RF D+  +     +P
Sbjct: 168 AKPLGGKWNFDAENRKALPRGHRAPRRRRFAPDAVTAEVMTLVEARFGDHFGRLDRFGWP 227

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIP----AIQGTSQLSPYLSIGVLSPRQCWNRLKE 265
           +    AL  L  F +  +  + + +D           + ++P L+IG+L+  +     + 
Sbjct: 228 VTRAEALQALEDFLRVGLPSFGDWQDAMQAGEDFLYHALIAPALNIGLLTALEVAAAAER 287

Query: 266 EFVDLLIKPKSGAFSWLNELI-WREFYRHLMAF-YPSVCMGKPFIPWTEKIEWNKDSHLL 323
           E+      P +    ++ ++I WREF R +     P                      L 
Sbjct: 288 EYHAGRA-PLNAVEGFIRQVIGWREFVRGIYWTEMPGYAATNALNATR---------PLP 337

Query: 324 QAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG 383
             +  G T    +   +R      + H+  R++          +     EE++++   D 
Sbjct: 338 AFYWTGATRMRCLAEVIRGTRDNAYAHHIQRLMVTGNFALLAGIAPAEIEEWYLAVYADA 397

Query: 384 D 384
            
Sbjct: 398 F 398


>gi|213983211|ref|NP_001135721.1| CPD photolyase-like [Xenopus (Silurana) tropicalis]
 gi|197246287|gb|AAI69177.1| Unknown (protein for MGC:189672) [Xenopus (Silurana) tropicalis]
          Length = 157

 Score = 41.5 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQK 70
           + W+  D R+ DN A   A   +  + + + +      +    + R   F+   L +V +
Sbjct: 94  VYWMSRDQRVQDNWAFLYAQRLALKQKLPLHVTFCLVPKFLDATIRHYGFMVKGLQEVAE 153

Query: 71  SL 72
            L
Sbjct: 154 VL 155


>gi|116753557|ref|YP_842675.1| deoxyribodipyrimidine photolyase-like [Methanosaeta thermophila
          PT]
 gi|116665008|gb|ABK14035.1| Deoxyribodipyrimidine photolyase-like protein [Methanosaeta
          thermophila PT]
          Length = 114

 Score = 41.5 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 34 DAKVIAVFIATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEW 93
          +A +  VF   P+     G   R   F+   L ++++ LS  GI F +      +   E 
Sbjct: 6  NASLAVVFCLAPQF---PGAGDRSYRFMLDGLRELEQRLSSLGIAFIFTHGDPGNVIPEI 62

Query: 94 LDS 96
          +D 
Sbjct: 63 IDD 65


>gi|85690826|gb|ABC73714.1| polyprotein [Papaya ringspot virus]
          Length = 3344

 Score = 41.2 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 80/240 (33%), Gaps = 24/240 (10%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
            +  +F       +  +   S    H++ + L      K L +        +  +  F++S
Sbjct: 2553 ICPLFRSYLECNEEAKTFFSPLMGHYMKSVLSKEAYVKDLLKYSSDIIVGEVDHDVFEES 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VAQVVELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYKGKKRKYFEGSTVEHRHTLV 2671

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
              + +   V    R  +    ++A+LR       + T   T + +               
Sbjct: 2672 RKSCERLYVG---RMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNN 2728

Query: 199  -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             +  + ++  + +G         +F ++    +V   D    Q  S L+PYL   VLS R
Sbjct: 2729 WFYSKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|121615482|gb|ABM63368.1| polyprotein [Papaya ringspot virus P]
          Length = 3343

 Score = 40.8 bits (94), Expect = 0.53,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 81/240 (33%), Gaps = 24/240 (10%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
            +  +F      ++  +   +    H++ + L      K L +        +  +  F++S
Sbjct: 2553 ICPLFRNYLECDEEAKTFFNPLMGHYMRSVLSKEAYVKDLLKYSSEIIVGEVDHEVFEES 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +E +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VEQVVELLNDHECPELEYVTDSEVIVQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 2671

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
              + +        R  +    ++A+LR       + T   T + +               
Sbjct: 2672 RKSCERL---YEGRMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNN 2728

Query: 199  -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             +  + ++  + +G         +F ++    ++   D    Q  S L+PYL   VLS R
Sbjct: 2729 WFYSKNMECPWTVGMTKFYKGWDEFLRKFPDGWIYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|321453625|gb|EFX64843.1| hypothetical protein DAPPUDRAFT_333781 [Daphnia pulex]
          Length = 179

 Score = 40.8 bits (94), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLF 107
           +   +  F+  SL  +  +L + G      + S      E    Y  +  + KL 
Sbjct: 13  VGPNRWRFLIQSLQDLNDNLKKIGSCLFLLKESP----TEMFKKYFKEWNIKKLT 63


>gi|296282421|ref|ZP_06860419.1| hypothetical protein CbatJ_02305 [Citromicrobium bathyomarinum
           JL354]
          Length = 524

 Score = 40.4 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 12/145 (8%)

Query: 242 TSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMA-FYP 299
            S LS  +++G+L P     R +  + +    P +    ++ +LI WRE+ R       P
Sbjct: 272 HSMLSTSINLGLLDPLDLCRRAETAYKE-GKAPLNSVEGFIRQLIGWREYIRGFYWLHMP 330

Query: 300 SVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITAS 359
            +                    L + +  G T    +   +R        H+  R++   
Sbjct: 331 HLQKANALNAQR---------ALPEFFWTGETEMRCLADCIRSTRDNAHAHHIQRLMVLG 381

Query: 360 FLVKDLLVDWRIGEEYFMSQLLDGD 384
                  +  R  +++++    D  
Sbjct: 382 NFCLIAGISPREVQDWYLVVYADAY 406


>gi|289774147|ref|ZP_06533525.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289704346|gb|EFD71775.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 503

 Score = 40.4 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 80/211 (37%), Gaps = 21/211 (9%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLSPRQCWNR 262
           +FP      L  LR+F + ++  +    D       +   S LS  L++G+L P +C  R
Sbjct: 221 LFPATRTEGLRALRRFVEHRLATFGPYEDAMLAADPVMSHSLLSSSLNLGLLDPVECVER 280

Query: 263 LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIE--WNK- 318
            +  + +    P +    ++ ++  WRE+   L  ++         +  T  +   WN+ 
Sbjct: 281 AERAWREGRA-PLNSVEGFVRQIAGWREYVWQLYWYFGEGYRRSNALGHTAPLPDWWNRL 339

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D+  ++A     T          Q+   GW H+  R++           D     ++F  
Sbjct: 340 DADAVRANCL-RTVLA-------QVRDTGWTHHIPRLMVLGSHALQRGWDPAAVTDWFHR 391

Query: 379 QLLDGD----LASNNGGWQWAASTGNDSVPY 405
             +DG     L +  G  Q+A      + PY
Sbjct: 392 CFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 422


>gi|256790272|ref|ZP_05528703.1| hypothetical protein SlivT_37818 [Streptomyces lividans TK24]
          Length = 498

 Score = 40.4 bits (93), Expect = 0.67,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 80/211 (37%), Gaps = 21/211 (9%)

Query: 207 MFPIGEQNALHILRKFCKEKVYYYVEQRD----IPAIQGTSQLSPYLSIGVLSPRQCWNR 262
           +FP      L  LR+F + ++  +    D       +   S LS  L++G+L P +C  R
Sbjct: 216 LFPATRTEGLRALRRFVEHRLATFGPYEDAMLAADPVMSHSLLSSSLNLGLLDPVECVER 275

Query: 263 LKEEFVDLLIKPKSGAFSWLNELI-WREFYRHLMAFYPSVCMGKPFIPWTEKIE--WNK- 318
            +  + +    P +    ++ ++  WRE+   L  ++         +  T  +   WN+ 
Sbjct: 276 AERAWREGRA-PLNSVEGFVRQIAGWREYVWQLYWYFGEGYRRSNALGHTAPLPDWWNRL 334

Query: 319 DSHLLQAWKQGYTGFPIIDAAMRQLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMS 378
           D+  ++A     T          Q+   GW H+  R++           D     ++F  
Sbjct: 335 DADAVRANCL-RTVLA-------QVRDTGWTHHIPRLMVLGSHALQRGWDPAAVTDWFHR 386

Query: 379 QLLDGD----LASNNGGWQWAASTGNDSVPY 405
             +DG     L +  G  Q+A      + PY
Sbjct: 387 CFVDGYDWVMLPNVVGMSQYADGGRMTTKPY 417


>gi|284431214|gb|ADB84374.1| DNA photolyase 1 [Apocheima cinerarium nucleopolyhedrovirus]
          Length = 123

 Score = 40.4 bits (93), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 11  LVWLRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGISARQSHFI 61
           + W+  D R+ DN A+  A   ++A+ + +++      R    S RQ HF+
Sbjct: 72  VYWMSRDSRVQDNWAMIYAQELANAQNLPLYVVFCLTKRFLNASLRQFHFL 122


>gi|23680942|gb|AAK17011.2| polyprotein [Papaya ringspot virus W]
          Length = 3346

 Score = 40.0 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 24/240 (10%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
            +  +F       +  +   S    H++ + L      K L +        +  +  F++S
Sbjct: 2553 ICPLFRNYLECNEEAKTFFSPLMGHYMKSVLSKEAYVKDLLKYSSDIIVGEVDHDVFEES 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VAQVVELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYKGKKRKYFEGSTVEHRHTLV 2671

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
              + +        R  +    ++A+LR       + T   T + +               
Sbjct: 2672 RKSCERL---YEGRMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNN 2728

Query: 199  -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             +  + ++  + +G         +F ++    +V   D    Q  S L+PYL   VLS R
Sbjct: 2729 WFYSKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|161168459|dbj|BAF93927.1| polyprotein [Papaya ringspot virus]
          Length = 3344

 Score = 40.0 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 76/237 (32%), Gaps = 18/237 (7%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
            +  +F       +  +   S    H++ + L      K L +        +  +  F++S
Sbjct: 2553 ICPLFRSYLECNEEAKTFFSPLMGHYMKSVLSKEAYVKDLLKYSSDIIVGEVDHDVFEES 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VAQVVELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYKGKKRKYFEGSTVEHRHTLV 2671

Query: 149  NHA------LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD--YP 200
              +       +M       +  L         ++    A  L   +        F+  + 
Sbjct: 2672 QKSCERLYEGRMGVWNGSLKAELRPAEKVLPKKTRSFTAAPLDTLLGAKVCVDDFNNWFY 2731

Query: 201  FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             + ++  + +G         +F ++    +V   D    Q  S L+PYL   VLS R
Sbjct: 2732 SKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|85690828|gb|ABC73715.1| polyprotein [Papaya ringspot virus]
          Length = 3344

 Score = 40.0 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 76/237 (32%), Gaps = 18/237 (7%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
            +  +F       +  +   S    H++ + L      K L +        +  +  F++S
Sbjct: 2553 ICPLFRSYLECNEEAKTFFSPLMGHYMKSVLSKEAYVKDLLKYSSDIIVGEVDHDVFEES 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VAQVVELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYKGKKRKYFEGSTVEHRHTLV 2671

Query: 149  NHA------LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD--YP 200
              +       +M       +  L         ++    A  L   +        F+  + 
Sbjct: 2672 QKSCERLYEGRMGVWNGSLKAELRPAEKVLPKKTRSFTAAPLDTLLGAKVCVDDFNNWFY 2731

Query: 201  FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             + ++  + +G         +F ++    +V   D    Q  S L+PYL   VLS R
Sbjct: 2732 SKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|257387724|ref|YP_003177497.1| Bacterio-opsin activator HTH domain protein [Halomicrobium
           mukohataei DSM 12286]
 gi|257170031|gb|ACV47790.1| Bacterio-opsin activator HTH domain protein [Halomicrobium
           mukohataei DSM 12286]
          Length = 209

 Score = 40.0 bits (92), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 6/95 (6%)

Query: 54  SARQSHFI--YASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQ 111
              +         L  + + L + GI F   + S   ++ + L    L+     +    +
Sbjct: 108 GEARWEITAPQERLSALGQQLEEFGIPFHVERVSQHVETEQLLTGSQLELIQAAV----E 163

Query: 112 YEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGS 146
               +  RD  L +      I KS     L     
Sbjct: 164 NGYYDTPRDCSLTELASEVGIAKSTCSETLHRAEE 198


>gi|9629245|ref|NP_056758.1| polyprotein [Papaya ringspot virus]
 gi|1709706|sp|Q01901|POLG_PRSVH RecName: Full=Genome polyprotein; Contains: RecName: Full=P1
            proteinase; AltName: Full=N-terminal protein; Contains:
            RecName: Full=Helper component proteinase; Short=HC-pro;
            Contains: RecName: Full=Protein P3; Contains: RecName:
            Full=6 kDa protein 1; Short=6K1; Contains: RecName:
            Full=Cytoplasmic inclusion protein; Short=CI; Contains:
            RecName: Full=6 kDa protein 2; Short=6K2; Contains:
            RecName: Full=Viral genome-linked protein; AltName:
            Full=VPg; Contains: RecName: Full=Nuclear inclusion
            protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa
            proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro;
            Contains: RecName: Full=Nuclear inclusion protein B;
            Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA
            polymerase; Contains: RecName: Full=Capsid protein;
            Short=CP; AltName: Full=Coat protein
 gi|61351|emb|CAA47905.1| polyprotein [Papaya ringspot virus]
 gi|258107|gb|AAB23789.1| polyprotein [Papaya ringspot virus]
          Length = 3344

 Score = 39.2 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 79/240 (32%), Gaps = 24/240 (10%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQC--SNFDDS 90
            +  +F      ++  +   S    H++ + L      K L +        +     F+DS
Sbjct: 2553 ICPLFRNYLECDEEAKAFFSPLMGHYMKSVLSKEAYIKDLLKYSSDIVVGEVNHDVFEDS 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VAQVIELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 2671

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
              + +        R  +    ++A+LR       + T   T + +               
Sbjct: 2672 RKSCERL---YEGRMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNN 2728

Query: 199  -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             +  + ++  + +G         +F K+    +V   D    Q  S L+PYL   VLS R
Sbjct: 2729 WFYSKNMECPWTVGMTKFYKGWDEFLKKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|168997616|gb|ACA42550.1| polyprotein [Papaya ringspot virus W]
          Length = 3347

 Score = 39.2 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 79/240 (32%), Gaps = 24/240 (10%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
            +  +F      ++  +   S    H++ + L      K L +        +  +  F+DS
Sbjct: 2556 ICPLFRNYLESDEEAKAFFSPLMGHYMKSVLSKEAYIKDLMKYSSDIIVGEVDHDVFEDS 2615

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2616 VAQVVELLNDHECPELEYITDSEVITQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 2674

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
              + +        R  +    ++A+LR       + T   T + +               
Sbjct: 2675 RKSCERL---YEGRMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNN 2731

Query: 199  -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             +  + ++  + +G         +F +     +V   D    Q  S L+PYL   VLS R
Sbjct: 2732 WFYSKNMECPWTVGMTKFYKGWDEFLRRFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2790


>gi|116109589|gb|ABJ74175.1| polyprotein [Papaya ringspot virus P]
          Length = 3341

 Score = 39.2 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 79/240 (32%), Gaps = 24/240 (10%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
            +  +F      ++  +   S    H++ + L      K L +        +  +  F+DS
Sbjct: 2552 ICPLFRNYLESDEEAKAFFSPLMGHYMKSVLSKEAYIKDLMKYSSDIIVGEVDHDVFEDS 2611

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2612 VAQVVELLNDHECPELEYITDSEVITQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 2670

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
              + +        R  +    ++A+LR       + T   T + +               
Sbjct: 2671 RKSCERL---YEGRMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNN 2727

Query: 199  -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             +  + ++  + +G         +F +     +V   D    Q  S L+PYL   VLS R
Sbjct: 2728 WFYSKNMECPWTVGMTKFYKGWDEFLRRFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2786


>gi|83312185|ref|YP_422449.1| nitrous oxide reductase [Magnetospirillum magneticum AMB-1]
 gi|82947026|dbj|BAE51890.1| Nitrous oxide reductase [Magnetospirillum magneticum AMB-1]
          Length = 768

 Score = 38.8 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 63/214 (29%), Gaps = 33/214 (15%)

Query: 42  IATPEQWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQ 101
           + TPE W+ +G           S   +++     G   Q  Q    D     L     + 
Sbjct: 87  VFTPEPWQGYGYDD-------ESKAVLKQ-----GSEVQGRQVLWGDTHHPALSETNGES 134

Query: 102 RVTKLFYN------------RQYEINEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN 149
               LF N            R +E  ++ ++ +L+   +H     S +   L+ P     
Sbjct: 135 DGQWLFINDKNTPRIAVVDLRDFETKQIVQNPILQS--EHGGAFVSPNTDYLMEPAQYPA 192

Query: 150 HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFP 209
                +     F +     +             R  G + P N       P+      F 
Sbjct: 193 PLGGEFAPLEQFNEKYRGAVTYWKF-------NRAEGRIEPENSFSVELPPYSQDLSDFG 245

Query: 210 IGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTS 243
            G  +    +  FC E+    +E+   P   G S
Sbjct: 246 KGPSDGWSFINSFCTERYVGGIERGRPPFEAGCS 279


>gi|157399686|gb|ABV53466.1| polyprotein [Papaya ringspot virus]
          Length = 3342

 Score = 38.8 bits (89), Expect = 2.0,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 79/240 (32%), Gaps = 24/240 (10%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQC--SNFDDS 90
            +  +F      ++  +   S    H++ + L      K L +        +     F+DS
Sbjct: 2553 ICPLFRNYLECDEEAKAFFSPLMGHYMKSVLSKEAYIKDLLKYSSDIVVGEVNHDVFEDS 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VAQVIELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 2671

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
              + +        R  +    ++A+LR       + T   T + +               
Sbjct: 2672 RKSCERL---YEGRMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNN 2728

Query: 199  -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             +  + ++  + +G         +F ++    +V   D    Q  S L+PYL   VLS R
Sbjct: 2729 WFYSKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|299067789|emb|CBJ38999.1| conserved protein of unknown function [Ralstonia solanacearum
          CMR15]
          Length = 92

 Score = 38.8 bits (89), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 14 LRNDLRITDNKALYAACHNSDAKVIAVFIATPEQWRQHGI 53
           R DLR  D+ AL+ A  +   +V   F+   E+     +
Sbjct: 26 FRRDLRHIDHAALHYALRHC-REVRCAFLFERERLDPLPV 64


>gi|170743549|ref|YP_001772204.1| deoxyribodipyrimidine photolyase-related protein [Methylobacterium
           sp. 4-46]
 gi|168197823|gb|ACA19770.1| deoxyribodipyrimidine photolyase-related protein [Methylobacterium
           sp. 4-46]
          Length = 533

 Score = 38.8 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 23/176 (13%)

Query: 174 LRSLPVPAIRLTGPVTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQ 233
              L  P   +T  V      RF  +        +P+  + AL  LR F  E +  + + 
Sbjct: 193 PARLRFPPDAVTREVIALVARRFPGHFGDLDGFGWPVTREQALAALRHFLDECLPAFGDY 252

Query: 234 RDIPAIQ----GTSQLSPYLSIGVLSPRQCWNRLKEEFVDLLIKPKSGAFSWLNE-LIWR 288
           +D           + L+P L++G+L   +   R  E        P +    ++ + L WR
Sbjct: 253 QDAMRAGAPFLYHALLAPALNLGLLDAEEV-CRAAERAHAEGRAPLNAVEGFIRQILGWR 311

Query: 289 EFYRHLMAFY-PSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQL 343
           E+ R L     P            + + W         +  G T       AMR L
Sbjct: 312 EYVRGLYWARMPDYAATNALGAARD-LPW--------FYWSGET-------AMRCL 351


>gi|195975851|gb|ACG63498.1| polyprotein [Papaya ringspot virus]
          Length = 3342

 Score = 38.5 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 87/263 (33%), Gaps = 30/263 (11%)

Query: 20   ITDN-KALYAAC-----HNSDAKVIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQ 69
            + DN K + +A       +    +  +F       +  +   +    H++ + L      
Sbjct: 2530 LHDNLKGVSSASSNLVTKHVVKGICPLFRSYLECNEEAKTFFNPLMGHYMKSVLSKEAYV 2589

Query: 70   KSLSQKGIVFQYHQCSN--FDDSIEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEK 125
            K L +        +  +  F++S+  +          +L Y    E+    +  D  +  
Sbjct: 2590 KDLLKYSSDIIVGEVDHDVFEESVTQVVELLNDHECPELEYITDSEVIIQALNMDAAVG- 2648

Query: 126  RLQHRVICKSFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLT 185
             L      K F+ S +    +++  + +        R  +    ++A+LR       + T
Sbjct: 2649 ALYTGKKRKYFEGSTVEHRHALVRKSCERL---YEGRMGVWNGSLKAELRPTEKVLAKKT 2705

Query: 186  GPVTPSNIPRFFD-----------YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQR 234
               T + +                +  + ++  + +G         +F ++    +V   
Sbjct: 2706 RSFTAAPLDTLLGAKVCVDDFNNWFYSKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC- 2764

Query: 235  DIPAIQGTSQLSPYLSIGVLSPR 257
            D    Q  S L+PYL   VLS R
Sbjct: 2765 DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|329763106|gb|AEC04846.1| polyprotein [Papaya ringspot virus P]
          Length = 3346

 Score = 38.5 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 80/240 (33%), Gaps = 24/240 (10%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
            +  +F      ++  +   +    H++ + L      K L +        +  +  F++S
Sbjct: 2553 ICPLFRNYLECDEEAKTFFNPLMGHYMKSVLSKEAYVKDLLKYSSDIIVGEVDHDVFEES 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VAQVVELLNDHECPELEYVTDSEVIVQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 2671

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
              + +        R  +    ++A+LR       + T   T + +               
Sbjct: 2672 RKSCERL---YEGRMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNN 2728

Query: 199  -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             +  + ++  + +G         +F ++    ++   D    Q  S L+PYL   VLS R
Sbjct: 2729 WFYSKNMECPWTVGMTKFYKGWDEFLRKFPDGWIYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|1771471|emb|CAA65886.1| PRSV YK polyprotein [Papaya ringspot virus]
          Length = 3344

 Score = 38.5 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 76/237 (32%), Gaps = 18/237 (7%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
            +  +F       +  +   +    H++ + L      K L +        +  +  F++S
Sbjct: 2553 ICPLFRSYLECNEEAKTFFNPLMGHYMKSVLSKEAYVKDLMKYSSDIIVGEVDHDVFEES 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VAQVVELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 2671

Query: 149  NHA------LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD--YP 200
              +       QM       +  L         ++    A  L   +        F+  + 
Sbjct: 2672 RKSCERLYGGQMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNNWFY 2731

Query: 201  FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             + ++  + +G         +F ++    +V   D    Q  S L+PYL   VLS R
Sbjct: 2732 SKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|308051122|ref|YP_003914688.1| hypothetical protein Fbal_3416 [Ferrimonas balearica DSM 9799]
 gi|307633312|gb|ADN77614.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799]
          Length = 1656

 Score = 38.5 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 3/128 (2%)

Query: 135 SFDDSVLLPPGSILNHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIP 194
              D   + PG  L          TP     +Q+              R+  P     + 
Sbjct: 554 EVADDTYVIPGIHLTAEQYYGDWNTPGLLPWLQSGTGLTGTISASQVDRVVNPEDADWLA 613

Query: 195 RFFDY-PFQAIDPMFPIGEQN-ALHILRKFCKEKVYY-YVEQRDIPAIQGTSQLSPYLSI 251
            F    P   ++ +F  G     + I   + +   +  Y + R   AI GTS  SP+++ 
Sbjct: 614 SFSSRGPSSTVEELFSPGIAAPGVDIFAAWTETNPFDPYGDTRAFNAISGTSMASPHVAG 673

Query: 252 GVLSPRQC 259
            +   RQ 
Sbjct: 674 MMTLIRQA 681


>gi|29469900|gb|AAO74620.1| polyprotein [Papaya ringspot virus]
          Length = 3342

 Score = 38.5 bits (88), Expect = 2.8,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 79/240 (32%), Gaps = 24/240 (10%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQC--SNFDDS 90
            +  +F      ++  +   S    H++ + L      K L +        +     F+DS
Sbjct: 2553 ICPLFRNYLECDKEAKAFFSPLMGHYMKSVLSKEAYIKDLFKYSSDIVVGEVNHDIFEDS 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VAQVVELLNDHECFELEYITDSEVIIQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 2671

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
              + +        R  +    ++A+LR       + T   T + +               
Sbjct: 2672 RKSCERL---YEGRMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNN 2728

Query: 199  -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             +  + ++  + +G         +F K+    +V   D    Q  S L+PYL   VLS R
Sbjct: 2729 WFYSKNMECPWTVGMTKFYKGWDEFLKKFPEGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|218511536|gb|ACK77782.1| replicase [synthetic construct]
          Length = 533

 Score = 38.1 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 79/240 (32%), Gaps = 24/240 (10%)

Query: 37  VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
           +  +F       +  +   S    H++ + L      K L +        +  +  F++S
Sbjct: 27  ICPLFRSYLECNEEAKTFFSPLMGHYMKSVLSKEAYVKDLLKYSSDIIVGEVDHDVFEES 86

Query: 91  IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
           +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 87  VAQVVELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYKGKKRKYFEGSTVEHRHTLV 145

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
             + +        R  +    ++A+LR       + T   T + +               
Sbjct: 146 RKSCERL---YEGRMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNN 202

Query: 199 -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
            +  + ++  + +G         +F ++    +V   D    Q  S L+PYL   VLS R
Sbjct: 203 WFYSKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 261


>gi|87130666|gb|ABD23971.1| Polyprotein [Papaya ringspot virus]
          Length = 3346

 Score = 38.1 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 78/240 (32%), Gaps = 24/240 (10%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQC--SNFDDS 90
            +  +F      ++  +   S    H++ + L      K L +        +     F+DS
Sbjct: 2553 ICPLFRNYLECDEEAKVFFSPLMGHYMKSVLSKEAYTKDLLKYSSDIVIGEVNHEIFEDS 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            I  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 IAQVIELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 2671

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
              + +        R  +    ++A+LR       +     T + +               
Sbjct: 2672 RKSCERL---YEGRMGVWNGSLKAELRPAEKVLAKKARSFTAAPLDTLLGAKVCVDDFNN 2728

Query: 199  -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             +  + ++  + +G         +F K+    +V   D    Q  S L+PYL   VLS R
Sbjct: 2729 WFYSKNMECPWTVGMTKFYKGWDEFLKKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|145299288|ref|YP_001142129.1| hypothetical protein ASA_2332 [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852060|gb|ABO90381.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 395

 Score = 37.7 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 18/146 (12%)

Query: 285 LIWREFYRHLMAFYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQGYTGFPIIDAAMRQLN 344
           L WREF R L            F+  +  +           +  G T    +  A+RQ  
Sbjct: 194 LGWREFVRALYWERMPELGHTNFLAASRPLP--------AYFWNGETRMACVGHAIRQSL 245

Query: 345 TIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDG----DLASNNGGWQWAASTGN 400
             G+ H+  R++          ++    +E+++   +D     +L +  G  Q+A     
Sbjct: 246 EHGYAHHIQRLMVTGNFALLAGINPDEVDEWYLGIYVDAIEWVELPNTRGMSQFADGGLM 305

Query: 401 DSVPYFRIFNPTIQGKRFDPQGTFIR 426
            S PY         G   D  G + +
Sbjct: 306 GSKPY------ASSGAYLDRMGHYCK 325


>gi|15341511|gb|AAK95653.1| polyprotein [Papaya ringspot virus]
          Length = 532

 Score = 37.7 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 79/253 (31%), Gaps = 18/253 (7%)

Query: 37  VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
           +  +F      ++  +   S    H++ + L      K L +        +  +  F+DS
Sbjct: 28  ICPLFRNYLECDEEAKAFFSPLMGHYMKSVLSKEAYVKDLLKYSSDIIVGEVDHNVFEDS 87

Query: 91  IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
           +  +          +L Y    E+    +  D  +   L      K F+ S +     ++
Sbjct: 88  VAQVVELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQDLV 146

Query: 149 NHA------LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD--YP 200
             +       +M       +  L         ++    A  L   +        F+  + 
Sbjct: 147 RKSCERLYEGRMGIWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNNWFY 206

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPRQCW 260
            + ++  + +G         +F ++    ++   D    Q  S L+PYL   VLS R   
Sbjct: 207 SKNMECPWTVGMTKFYKGWDEFLRKFPDGWIYC-DADGSQFDSSLTPYLLNAVLSIRLWA 265

Query: 261 NRLKEEFVDLLIK 273
               E    +L  
Sbjct: 266 MEEWEIGAQMLKN 278


>gi|14581405|gb|AAG47346.1| polyprotein [Papaya ringspot virus W]
          Length = 3343

 Score = 37.7 bits (86), Expect = 4.4,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 79/240 (32%), Gaps = 24/240 (10%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
            V  +F      ++  +   S    H++ + L      K L +        +  +  F+DS
Sbjct: 2553 VCPLFRSYLECDEEAKAFFSPLMGHYMKSVLSKEAYVKDLLKYSSDIIVGEVDHDVFEDS 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VAQVIELLNDHECPELEYVTDSEVIIQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 2671

Query: 149  NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
              + +        R  +    ++A+LR       + T   T + +               
Sbjct: 2672 RKSCERL---YEGRMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNN 2728

Query: 199  -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             +  + ++  + +G         +F ++    +V        Q  S L+PYL   VLS R
Sbjct: 2729 WFYSKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC-GADGSQFDSSLTPYLLNAVLSIR 2787


>gi|27542792|gb|AAO16605.1| polyprotein [Papaya ringspot virus]
          Length = 3343

 Score = 37.7 bits (86), Expect = 4.7,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 77/237 (32%), Gaps = 18/237 (7%)

Query: 37   VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
            +  +F      ++  +   S    H++ + L      K L +        +  +  F++S
Sbjct: 2553 ICPLFRNYLECDEEAKAFFSPLMGHYMKSVLSKEAYVKDLLKYSSDIIVGEVDHDVFEES 2612

Query: 91   IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
            +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 2613 VAQVVELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYTGKKRKYFEGSTVDHRQALV 2671

Query: 149  NHA------LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD--YP 200
              +       +M       +  L         ++    A  L   +        F+  + 
Sbjct: 2672 RKSCERLYEGRMGIWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNNWFY 2731

Query: 201  FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
             + ++  + +G         +F ++    +V   D    Q  S L+PYL   VLS R
Sbjct: 2732 SKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 2787


>gi|18766571|gb|AAL79022.1|AF469604_1 replicase [Papaya ringspot virus]
          Length = 533

 Score = 37.7 bits (86), Expect = 4.8,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 76/237 (32%), Gaps = 18/237 (7%)

Query: 37  VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
           +  +F       +  +   S    H++ + L      K L +        +  +  F++S
Sbjct: 27  ICPLFRSYLECNEEAKTFFSPLMGHYMKSVLSKEAYVKDLLKYSSDIIVGEVDHDVFEES 86

Query: 91  IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
           +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 87  VAQVVELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYKGTKRKYFEGSTVEHRQALV 145

Query: 149 NHA------LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD--YP 200
             +       QM       +  L         ++    A  L   +        F+  + 
Sbjct: 146 RKSCERLYGGQMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLETFLGAKVCVDDFNNWFY 205

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
            + ++  + +G         +F ++    +V   D    Q  S L+PYL   VLS R
Sbjct: 206 SKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 261


>gi|25013557|ref|NP_734241.1| NIb protein [Papaya ringspot virus]
          Length = 537

 Score = 37.3 bits (85), Expect = 6.1,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 79/240 (32%), Gaps = 24/240 (10%)

Query: 37  VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQC--SNFDDS 90
           +  +F      ++  +   S    H++ + L      K L +        +     F+DS
Sbjct: 33  ICPLFRNYLECDEEAKAFFSPLMGHYMKSVLSKEAYIKDLLKYSSDIVVGEVNHDVFEDS 92

Query: 91  IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
           +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 93  VAQVIELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 151

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
             + +        R  +    ++A+LR       + T   T + +               
Sbjct: 152 RKSCERL---YEGRMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNN 208

Query: 199 -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
            +  + ++  + +G         +F K+    +V   D    Q  S L+PYL   VLS R
Sbjct: 209 WFYSKNMECPWTVGMTKFYKGWDEFLKKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 267


>gi|113195612|ref|NP_001037805.1| putative helicase mov-10-B.2 [Danio rerio]
 gi|123889019|sp|Q1LXK5|M10B2_DANRE RecName: Full=Putative helicase mov-10-B.2
 gi|94732398|emb|CAK11381.1| novel protein similar to vertebrate Mov10, Moloney leukemia virus
           10, homolog (mouse) (MOV10) [Danio rerio]
          Length = 1015

 Score = 36.9 bits (84), Expect = 7.0,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 106/332 (31%), Gaps = 51/332 (15%)

Query: 37  VIAV--FIATPE--QWRQHGISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIE 92
           V+ +  +I  P+     +       S      L  +Q  L        +   +   D + 
Sbjct: 322 VLPLGKYIPPPDTTILAELLKEDCSSRIFRGKLKDLQSLLQ---SPLTFDNYAERFDLLL 378

Query: 93  WLDSYCLQQRVTKLFYNRQYEINEVRRDKLLEKR----LQHRVICKSFDDSVLLPPGSIL 148
           +L+   +   + +  YN+        RDK L       +          D +LL     +
Sbjct: 379 YLEECQMHVDIKR--YNKDSVTLHRDRDKRLMGLNLPGVSENRPSVLRGDHLLLTKSEEV 436

Query: 149 N-----------HALQMYKVYTPFRKALIQNLVQADLR----------SLPVPAIRLTGP 187
                       H +++ +V     K  ++++    ++           + +    +   
Sbjct: 437 TFSNVTKYKGYVHRVELDQVKLGLSKRFLKDVYIDKMKFRVEFTVNRIPVRLQHRAVHMA 496

Query: 188 VTPSNIPRFFDYPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSP 247
           V  +     F    ++++P+ P     AL +  +  +     Y    +I A  GTS+ +P
Sbjct: 497 VQHNLKDVLFPMASRSLNPVSPP----ALRLFDRKLEYNFQQYSAVCNIVA--GTSKPAP 550

Query: 248 YLSIG------VLSPRQCWNRLKEEFVDLL----IKPKSGAFSWLNELIWREFY-RHLMA 296
           YL  G       ++  +   ++++   D          S A     +LI  E    H + 
Sbjct: 551 YLVFGPPGTGKTVTIVEAIKQVEKNIPDAYILACAPSNSAADQLCEKLITSEHVDAHKIY 610

Query: 297 FYPSVCMGKPFIPWTEKIEWNKDSHLLQAWKQ 328
              +    +  IP   K   N D  ++    +
Sbjct: 611 RLYASSRNQKDIPKILKDNCNVDEEMIDFPCK 642


>gi|297825393|ref|XP_002880579.1| hypothetical protein ARALYDRAFT_900967 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326418|gb|EFH56838.1| hypothetical protein ARALYDRAFT_900967 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1158

 Score = 36.9 bits (84), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 33/72 (45%)

Query: 53  ISARQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQY 112
           +S R +   Y  +  ++K+     I +   +     +++  L     + R+  +F++ +Y
Sbjct: 24  LSFRGADLRYGFIDHLKKAFMANNIRYYIDEIEPRGENLGILFQRIRESRIALVFFSNRY 83

Query: 113 EINEVRRDKLLE 124
             +E   D+L+E
Sbjct: 84  PESEWCLDELVE 95


>gi|47834997|gb|AAT39133.1| type II CPD DNA photolyase [Marchantia polymorpha]
          Length = 118

 Score = 36.9 bits (84), Expect = 7.1,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 9/111 (8%)

Query: 293 HLMAFYPSVCMGKPFIPWTEKI--EWNKDSHLLQAWKQ----GYTGFPIIDAAMRQLNTI 346
           +   + P+    +   PW  +   +   D       K+    G T   + +A+  ++   
Sbjct: 8   NYCYYQPNYDNLQGAFPWARESLQKHAADPREYVYTKEQLEKGQTYDELWNASQHEMVHH 67

Query: 347 GWMHNRLRMITASFLVKDLLVDWRIGE---EYFMSQLLDGDLASNNGGWQW 394
           G MH  +RM  A  +++             E      +DG   +   G  W
Sbjct: 68  GKMHGFMRMYWAKKILEWTPSPEEALAIAIELNDKYEIDGRDPNGFVGCMW 118


>gi|575957|emb|CAA55300.1| coat protein [Papaya ringspot virus]
 gi|1584319|prf||2122373A nuclear inclusion protein b
          Length = 917

 Score = 36.9 bits (84), Expect = 7.2,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 76/237 (32%), Gaps = 18/237 (7%)

Query: 37  VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDS 90
           +  +F       +  +   +    H++ + L      K L +        +  +  F++S
Sbjct: 126 ICPLFRSYLECNEEAKTFFNPLMGHYMKSVLSKEAYVKDLMKYSSDIIVGEVDHDVFEES 185

Query: 91  IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
           +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 186 VAQVVELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 244

Query: 149 NHA------LQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD--YP 200
             +       QM       +  L         ++    A  L   +        F+  + 
Sbjct: 245 RKSCERLYGGQMGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNNWFY 304

Query: 201 FQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
            + ++  + +G         +F ++    +V   D    Q  S L+PYL   VLS R
Sbjct: 305 SKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 360


>gi|1235580|emb|CAA65383.1| NIb and coat proteins [Papaya ringspot virus]
          Length = 823

 Score = 36.9 bits (84), Expect = 7.3,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 79/239 (33%), Gaps = 24/239 (10%)

Query: 38  IAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQCSN--FDDSI 91
             +F      ++  +   S    H++ + L      K L +        +  +  F++S+
Sbjct: 34  CPLFRNYLECDEEAKTFFSPLMGHYMKSVLSKEAYVKDLMKYSSDIIVGEVDHDVFEESV 93

Query: 92  EWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSILN 149
             +          +L Y    E+    +  D  +   L      K F+ S +    +++ 
Sbjct: 94  TQVVELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALVR 152

Query: 150 HALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD----------- 198
            + +        R  +    ++A+LR       + T   T + +                
Sbjct: 153 KSCERL---YEGRMGVWNGSLKAELRPTEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNNW 209

Query: 199 YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
           +  + +D  + +G         +F ++    +V   D    Q  S L+PYL   VLS R
Sbjct: 210 FYSKNMDCPWTVGMTKFYKGWDEFLRKFPDGWVYC-DADGSQFDSSLTPYLLDAVLSIR 267


>gi|116332723|ref|YP_794250.1| IS30 family transposase [Lactobacillus brevis ATCC 367]
 gi|116333212|ref|YP_794739.1| IS30 family transposase [Lactobacillus brevis ATCC 367]
 gi|116333363|ref|YP_794890.1| IS30 family transposase [Lactobacillus brevis ATCC 367]
 gi|116333927|ref|YP_795454.1| IS30 family transposase [Lactobacillus brevis ATCC 367]
 gi|116334728|ref|YP_796255.1| IS30 family transposase [Lactobacillus brevis ATCC 367]
 gi|116098070|gb|ABJ63219.1| Transposase, IS30 family [Lactobacillus brevis ATCC 367]
 gi|116098559|gb|ABJ63708.1| Transposase, IS30 family [Lactobacillus brevis ATCC 367]
 gi|116098710|gb|ABJ63859.1| Transposase, IS30 family [Lactobacillus brevis ATCC 367]
 gi|116099274|gb|ABJ64423.1| Transposase, IS30 family [Lactobacillus brevis ATCC 367]
 gi|116100075|gb|ABJ65224.1| Transposase, IS30 family [Lactobacillus brevis ATCC 367]
          Length = 307

 Score = 36.9 bits (84), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 56  RQSHFIYASLLQVQKSLSQKGIVFQYHQCSNFDDSIEWLDSYCLQQRVTKLFYNRQYEIN 115
           R S F+  ++L++   L  K           F +          Q   T++++   Y  +
Sbjct: 193 RDSQFMTQAVLELASQLQDKLKTLTVDHGKEFANY-----QTIEQLTGTQVYFAHAYSPH 247

Query: 116 EV----RRDKLLEKRLQHRVICKSFDD-SVLLPPGSILNHALQMYKVYTP 160
           E      R+++L + +      +   D  ++     + +  L+    +TP
Sbjct: 248 ERGSNENRNRVLRRFIPKGQAIEELSDYQLVQINWYLNSRPLKCLNWHTP 297


>gi|21429812|gb|AAM50584.1| GH02014p [Drosophila melanogaster]
          Length = 570

 Score = 36.5 bits (83), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 9/88 (10%)

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L    W H + R I A  L       W     +     +  + A N             
Sbjct: 75  ELQDTNWTHAQKREIVAKGLDSGGCTVWDWNYGHLAK--MSYEAALNY------TGHLTQ 126

Query: 402 SVPYFRIFNPTIQGKRF-DPQGTFIRHW 428
             P   +         F  P+ TF+  W
Sbjct: 127 ISPPAEVSCRVKGQHEFAHPETTFVADW 154


>gi|24649622|ref|NP_651240.1| CG6356 [Drosophila melanogaster]
 gi|10726746|gb|AAF56273.2| CG6356 [Drosophila melanogaster]
 gi|201065789|gb|ACH92304.1| FI05810p [Drosophila melanogaster]
          Length = 570

 Score = 36.5 bits (83), Expect = 8.9,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 9/88 (10%)

Query: 342 QLNTIGWMHNRLRMITASFLVKDLLVDWRIGEEYFMSQLLDGDLASNNGGWQWAASTGND 401
           +L    W H + R I A  L       W     +     +  + A N             
Sbjct: 75  ELQDTNWTHAQKREIVAKGLDSGGCTVWDWNYGHLAK--MSYEAALNY------TGHLTQ 126

Query: 402 SVPYFRIFNPTIQGKRF-DPQGTFIRHW 428
             P   +         F  P+ TF+  W
Sbjct: 127 ISPPAEVSCRVKGQHEFAHPETTFVADW 154


>gi|109391203|gb|ABG33855.1| polyprotein [Papaya ringspot virus]
          Length = 405

 Score = 36.5 bits (83), Expect = 9.3,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 79/240 (32%), Gaps = 24/240 (10%)

Query: 37  VIAVF--IATPEQWRQHGISARQSHFIYASL--LQVQKSLSQKGIVFQYHQC--SNFDDS 90
           +  +F      ++  +   S    H++ + L      K L +        +     F+DS
Sbjct: 130 ICPLFRNYLECDEEAKAFFSPLMGHYMKSVLSKEAYIKDLLKYSSDIVVGEVNHDVFEDS 189

Query: 91  IEWLDSYCLQQRVTKLFYNRQYEI--NEVRRDKLLEKRLQHRVICKSFDDSVLLPPGSIL 148
           +  +          +L Y    E+    +  D  +   L      K F+ S +    +++
Sbjct: 190 VAQVIELLNDHECPELEYITDSEVIIQALNMDAAVG-ALYTGKKRKYFEGSTVEHRQALV 248

Query: 149 NHALQMYKVYTPFRKALIQNLVQADLRSLPVPAIRLTGPVTPSNIPRFFD---------- 198
             + +        R  +    ++A+LR       + T   T + +               
Sbjct: 249 RKSCERL---YEGRVGVWNGSLKAELRPAEKVLAKKTRSFTAAPLDTLLGAKVCVDDFNN 305

Query: 199 -YPFQAIDPMFPIGEQNALHILRKFCKEKVYYYVEQRDIPAIQGTSQLSPYLSIGVLSPR 257
            +  + ++  + +G         +F ++    +V   D    Q  S L+PYL   VLS R
Sbjct: 306 WFYSKNMECPWTVGMTKFYKGWDEFLRKFPDGWVYC-DADGSQFDSSLTPYLLNAVLSIR 364


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.315    0.138    0.421 

Lambda     K      H
   0.267   0.0423    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,485,197,626
Number of Sequences: 14124377
Number of extensions: 412093652
Number of successful extensions: 1372454
Number of sequences better than 10.0: 3337
Number of HSP's better than 10.0 without gapping: 5237
Number of HSP's successfully gapped in prelim test: 658
Number of HSP's that attempted gapping in prelim test: 1343375
Number of HSP's gapped (non-prelim): 7188
length of query: 483
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 340
effective length of database: 2,823,007,719
effective search space: 959822624460
effective search space used: 959822624460
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 83 (36.5 bits)